Query 000589
Match_columns 1403
No_of_seqs 892 out of 4818
Neff 7.2
Searched_HMMs 46136
Date Mon Apr 1 20:15:25 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000589.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000589hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1839 Uncharacterized protei 100.0 4E-155 8E-160 1446.1 60.0 1071 68-1217 17-1150(1236)
2 PF13236 CLU: Clustered mitoch 100.0 1.4E-60 3.1E-65 522.6 18.1 203 387-641 1-221 (221)
3 PF12807 eIF3_p135: Translatio 100.0 4.1E-37 8.8E-42 326.6 11.5 165 781-971 1-169 (169)
4 KOG1840 Kinesin light chain [C 99.9 4.3E-24 9.2E-29 258.1 36.8 286 997-1290 198-493 (508)
5 KOG1840 Kinesin light chain [C 99.9 1.3E-22 2.8E-27 245.3 36.1 298 1016-1335 175-482 (508)
6 KOG4626 O-linked N-acetylgluco 99.9 3.3E-24 7.2E-29 248.9 15.4 237 990-1277 210-450 (966)
7 PF15044 CLU_N: Mitochondrial 99.9 4.7E-24 1E-28 194.0 7.7 76 100-181 1-76 (76)
8 KOG4626 O-linked N-acetylgluco 99.9 6.2E-22 1.3E-26 230.3 19.4 239 988-1277 242-484 (966)
9 KOG1839 Uncharacterized protei 99.8 1.3E-19 2.8E-24 229.9 28.1 776 263-1293 81-1061(1236)
10 TIGR00990 3a0801s09 mitochondr 99.8 1.9E-17 4.1E-22 212.3 32.3 295 998-1335 160-574 (615)
11 TIGR00990 3a0801s09 mitochondr 99.8 1.4E-16 3.1E-21 204.2 30.8 274 997-1334 126-498 (615)
12 PRK15174 Vi polysaccharide exp 99.7 3.6E-14 7.8E-19 182.4 32.3 266 999-1335 111-384 (656)
13 PRK11788 tetratricopeptide rep 99.6 7.3E-14 1.6E-18 169.0 31.4 236 1000-1277 37-277 (389)
14 PF05303 DUF727: Protein of un 99.6 3.2E-16 6.9E-21 152.1 7.5 88 244-337 15-105 (108)
15 KOG1130 Predicted G-alpha GTPa 99.6 4.7E-14 1E-18 158.9 20.9 301 1000-1335 19-347 (639)
16 KOG1130 Predicted G-alpha GTPa 99.6 5E-14 1.1E-18 158.7 20.7 263 997-1277 54-343 (639)
17 PRK11788 tetratricopeptide rep 99.6 9.2E-13 2E-17 159.4 33.0 279 997-1332 68-347 (389)
18 PRK11447 cellulose synthase su 99.6 1.4E-13 3.1E-18 188.1 28.9 173 997-1195 302-524 (1157)
19 PRK11447 cellulose synthase su 99.6 2E-13 4.3E-18 186.7 28.7 280 997-1331 384-739 (1157)
20 TIGR02917 PEP_TPR_lipo putativ 99.6 6.3E-13 1.4E-17 176.3 31.4 240 998-1277 22-289 (899)
21 TIGR02917 PEP_TPR_lipo putativ 99.6 3.6E-13 7.9E-18 178.6 27.8 282 998-1334 567-868 (899)
22 PRK15174 Vi polysaccharide exp 99.6 8.1E-13 1.7E-17 170.0 29.3 269 991-1332 71-347 (656)
23 KOG1126 DNA-binding cell divis 99.6 1.2E-13 2.6E-18 165.8 19.8 242 998-1282 353-624 (638)
24 TIGR02521 type_IV_pilW type IV 99.5 1.5E-12 3.2E-17 143.6 23.9 201 994-1238 27-227 (234)
25 KOG1126 DNA-binding cell divis 99.5 2.9E-13 6.3E-18 162.5 18.7 277 999-1335 318-623 (638)
26 PRK09782 bacteriophage N4 rece 99.5 1.5E-12 3.3E-17 171.4 27.2 227 997-1278 476-706 (987)
27 KOG2002 TPR-containing nuclear 99.5 3.4E-12 7.4E-17 157.9 27.7 287 990-1334 299-595 (1018)
28 KOG0547 Translocase of outer m 99.5 9.6E-12 2.1E-16 143.9 28.3 209 1001-1250 363-571 (606)
29 KOG2003 TPR repeat-containing 99.5 1.1E-11 2.4E-16 140.8 28.1 227 1000-1277 456-688 (840)
30 PRK12370 invasion protein regu 99.5 4.3E-12 9.3E-17 160.6 26.0 247 992-1288 252-512 (553)
31 KOG1155 Anaphase-promoting com 99.5 1.6E-11 3.5E-16 141.4 27.3 196 1004-1238 336-531 (559)
32 KOG0547 Translocase of outer m 99.5 1.3E-12 2.9E-17 150.9 18.6 236 997-1278 325-566 (606)
33 COG3063 PilF Tfp pilus assembl 99.4 5.5E-12 1.2E-16 134.9 20.4 200 995-1238 32-231 (250)
34 TIGR02521 type_IV_pilW type IV 99.4 1.2E-11 2.6E-16 136.4 24.1 203 1036-1276 27-230 (234)
35 PRK09782 bacteriophage N4 rece 99.4 1.1E-11 2.3E-16 163.5 24.4 225 1000-1277 511-739 (987)
36 KOG2003 TPR repeat-containing 99.4 2E-11 4.3E-16 138.8 22.8 277 986-1332 407-689 (840)
37 PRK10049 pgaA outer membrane p 99.4 6.6E-11 1.4E-15 155.3 29.9 129 995-1148 46-174 (765)
38 PRK04841 transcriptional regul 99.4 3.4E-10 7.3E-15 152.3 35.1 320 997-1348 451-776 (903)
39 KOG1155 Anaphase-promoting com 99.4 1.2E-10 2.5E-15 134.5 24.6 197 1041-1277 331-535 (559)
40 COG3063 PilF Tfp pilus assembl 99.3 6.4E-11 1.4E-15 126.9 19.8 201 1036-1274 31-232 (250)
41 PRK12370 invasion protein regu 99.3 1E-10 2.2E-15 148.1 25.0 230 998-1277 295-534 (553)
42 KOG1173 Anaphase-promoting com 99.3 2.4E-11 5.2E-16 143.4 16.8 213 995-1248 309-521 (611)
43 PRK10049 pgaA outer membrane p 99.3 5.6E-10 1.2E-14 146.6 31.8 276 1000-1333 17-340 (765)
44 PRK11189 lipoprotein NlpI; Pro 99.3 1.7E-10 3.8E-15 134.6 23.9 206 995-1246 61-266 (296)
45 KOG1129 TPR repeat-containing 99.3 1.6E-11 3.4E-16 135.7 13.9 227 1002-1277 227-457 (478)
46 KOG2002 TPR-containing nuclear 99.3 7.8E-10 1.7E-14 137.5 29.8 278 998-1335 270-562 (1018)
47 PRK11189 lipoprotein NlpI; Pro 99.3 1.5E-10 3.2E-15 135.2 22.7 218 1012-1278 40-265 (296)
48 KOG1129 TPR repeat-containing 99.3 1.7E-11 3.7E-16 135.4 12.4 216 997-1260 255-470 (478)
49 PF13429 TPR_15: Tetratricopep 99.3 2.1E-11 4.5E-16 141.2 13.1 267 1002-1334 12-279 (280)
50 KOG1173 Anaphase-promoting com 99.3 1.8E-10 4E-15 136.0 19.9 209 1036-1277 308-517 (611)
51 TIGR03302 OM_YfiO outer membra 99.3 4.6E-10 1E-14 126.3 22.6 179 995-1193 30-230 (235)
52 KOG0624 dsRNA-activated protei 99.2 2.6E-09 5.6E-14 119.1 26.9 297 992-1334 32-372 (504)
53 TIGR03302 OM_YfiO outer membra 99.2 1E-09 2.2E-14 123.6 21.0 177 1036-1238 29-227 (235)
54 PRK04841 transcriptional regul 99.2 1.5E-08 3.3E-13 136.4 35.0 305 1001-1337 412-725 (903)
55 KOG0550 Molecular chaperone (D 99.2 4.6E-10 9.9E-15 128.3 16.7 299 985-1334 36-352 (486)
56 cd05804 StaR_like StaR_like; a 99.2 6.7E-09 1.5E-13 124.2 27.8 304 984-1335 29-339 (355)
57 TIGR00540 hemY_coli hemY prote 99.1 1.8E-08 4E-13 123.1 29.1 284 998-1337 84-404 (409)
58 KOG1125 TPR repeat-containing 99.1 1.1E-09 2.3E-14 130.4 17.4 206 1002-1247 289-529 (579)
59 PF13429 TPR_15: Tetratricopep 99.1 3.6E-10 7.8E-15 130.9 13.4 233 997-1277 43-276 (280)
60 PRK10747 putative protoheme IX 99.1 1.5E-08 3.2E-13 123.4 27.7 273 996-1335 82-393 (398)
61 COG2956 Predicted N-acetylgluc 99.1 8.3E-08 1.8E-12 107.3 30.2 252 994-1290 65-317 (389)
62 KOG2076 RNA polymerase III tra 99.1 2.4E-08 5.1E-13 124.0 28.5 311 979-1335 153-558 (895)
63 COG2956 Predicted N-acetylgluc 99.1 6.5E-08 1.4E-12 108.1 27.2 232 1004-1277 41-277 (389)
64 cd05804 StaR_like StaR_like; a 99.1 7.9E-08 1.7E-12 115.0 30.3 249 1005-1285 83-344 (355)
65 KOG1941 Acetylcholine receptor 99.1 4.5E-08 9.7E-13 110.2 25.2 282 986-1285 31-328 (518)
66 PF14938 SNAP: Soluble NSF att 99.0 1.5E-08 3.3E-13 117.5 22.5 209 1016-1238 2-220 (282)
67 PF14938 SNAP: Soluble NSF att 99.0 1.7E-08 3.6E-13 117.2 22.2 190 998-1195 35-225 (282)
68 KOG0624 dsRNA-activated protei 99.0 2.8E-07 6.1E-12 103.2 29.5 299 994-1332 68-421 (504)
69 KOG1174 Anaphase-promoting com 99.0 3.8E-08 8.2E-13 112.5 23.1 266 998-1334 232-502 (564)
70 KOG1125 TPR repeat-containing 99.0 4.8E-09 1E-13 125.0 15.3 184 993-1200 314-532 (579)
71 KOG0548 Molecular co-chaperone 99.0 1.3E-07 2.8E-12 112.3 25.5 290 999-1333 3-388 (539)
72 PF13424 TPR_12: Tetratricopep 99.0 4.4E-09 9.5E-14 97.2 10.5 78 1120-1198 1-78 (78)
73 PF13424 TPR_12: Tetratricopep 98.9 4.8E-09 1E-13 96.9 10.0 78 1078-1156 1-78 (78)
74 PRK14574 hmsH outer membrane p 98.9 1.8E-07 3.8E-12 121.9 27.2 166 997-1195 33-198 (822)
75 PRK15359 type III secretion sy 98.9 1.3E-08 2.8E-13 106.0 13.1 125 1018-1177 13-137 (144)
76 KOG1941 Acetylcholine receptor 98.9 3.9E-07 8.5E-12 102.8 24.5 266 998-1284 6-282 (518)
77 PRK10747 putative protoheme IX 98.9 1.7E-07 3.6E-12 114.3 23.3 234 998-1277 118-389 (398)
78 PRK15179 Vi polysaccharide bio 98.9 1E-07 2.3E-12 121.9 21.9 162 1006-1196 57-218 (694)
79 KOG0548 Molecular co-chaperone 98.8 2.7E-07 5.9E-12 109.5 22.7 217 997-1247 223-457 (539)
80 TIGR00540 hemY_coli hemY prote 98.8 3.1E-07 6.6E-12 112.5 24.1 244 998-1277 118-398 (409)
81 KOG0550 Molecular chaperone (D 98.8 3.8E-07 8.2E-12 104.9 22.0 172 1000-1196 171-351 (486)
82 PLN03218 maturation of RBCL 1; 98.8 6.7E-07 1.5E-11 119.5 27.8 236 997-1277 506-747 (1060)
83 KOG1174 Anaphase-promoting com 98.8 1E-06 2.2E-11 101.1 24.1 301 921-1277 196-499 (564)
84 PRK14574 hmsH outer membrane p 98.8 2.7E-06 5.8E-11 111.0 31.4 103 992-1111 96-198 (822)
85 PLN02789 farnesyltranstransfer 98.8 8.3E-07 1.8E-11 104.3 23.9 210 1004-1260 43-262 (320)
86 CHL00033 ycf3 photosystem I as 98.8 1.2E-07 2.6E-12 101.3 14.8 131 1079-1215 32-162 (168)
87 PRK15179 Vi polysaccharide bio 98.8 1.3E-07 2.9E-12 121.0 17.6 154 997-1178 85-238 (694)
88 KOG2376 Signal recognition par 98.7 2E-05 4.4E-10 94.6 33.6 142 1001-1153 82-253 (652)
89 KOG2076 RNA polymerase III tra 98.7 3.8E-06 8.3E-11 105.0 27.5 222 982-1238 193-507 (895)
90 PRK15359 type III secretion sy 98.7 1.1E-07 2.5E-12 98.9 12.0 112 1001-1136 27-138 (144)
91 PLN03218 maturation of RBCL 1; 98.7 2.3E-06 4.9E-11 114.6 26.8 237 997-1277 541-782 (1060)
92 KOG0495 HAT repeat protein [RN 98.7 1.8E-06 3.9E-11 103.7 22.7 286 1001-1338 553-852 (913)
93 PRK14720 transcript cleavage f 98.7 1.1E-06 2.4E-11 113.2 22.8 246 993-1280 26-285 (906)
94 PRK10370 formate-dependent nit 98.7 1.1E-06 2.3E-11 96.6 19.4 119 1053-1195 52-173 (198)
95 CHL00033 ycf3 photosystem I as 98.7 6.1E-07 1.3E-11 95.8 16.7 119 992-1123 29-154 (168)
96 PLN03081 pentatricopeptide (PP 98.7 1E-06 2.2E-11 115.4 21.8 233 997-1277 188-454 (697)
97 KOG4162 Predicted calmodulin-b 98.6 7.1E-06 1.5E-10 101.1 27.0 245 994-1280 474-785 (799)
98 PRK10370 formate-dependent nit 98.6 5.1E-07 1.1E-11 99.1 15.9 120 1011-1154 52-174 (198)
99 KOG4162 Predicted calmodulin-b 98.6 3.8E-05 8.3E-10 94.8 32.4 294 995-1335 390-786 (799)
100 PLN03081 pentatricopeptide (PP 98.6 3.2E-06 7E-11 110.7 25.2 265 997-1332 289-557 (697)
101 KOG0553 TPR repeat-containing 98.6 2.8E-07 6E-12 103.2 12.7 124 994-1141 77-200 (304)
102 PF13525 YfiO: Outer membrane 98.6 4.8E-06 1E-10 92.0 21.3 170 997-1186 4-198 (203)
103 TIGR02552 LcrH_SycD type III s 98.6 9.4E-07 2E-11 90.3 14.2 111 1020-1154 5-115 (135)
104 PRK15363 pathogenicity island 98.6 1.4E-06 3E-11 90.3 15.2 102 1037-1154 32-133 (157)
105 PF12569 NARP1: NMDA receptor- 98.6 1E-05 2.2E-10 100.5 25.7 296 998-1335 4-337 (517)
106 PRK02603 photosystem I assembl 98.6 3E-06 6.5E-11 90.9 18.5 127 1077-1216 30-163 (172)
107 PRK10866 outer membrane biogen 98.5 1.4E-05 3.1E-10 90.5 24.1 175 996-1190 30-236 (243)
108 KOG1156 N-terminal acetyltrans 98.5 1.4E-05 3.1E-10 96.8 24.7 236 999-1277 8-247 (700)
109 PRK15363 pathogenicity island 98.5 2.7E-06 5.9E-11 88.2 15.6 101 996-1112 33-133 (157)
110 COG5010 TadD Flp pilus assembl 98.5 2.7E-06 5.8E-11 93.8 16.2 164 1036-1238 63-226 (257)
111 COG5010 TadD Flp pilus assembl 98.5 2.3E-06 5E-11 94.4 15.1 157 1002-1190 70-226 (257)
112 TIGR02552 LcrH_SycD type III s 98.5 1.8E-06 4E-11 88.2 13.6 102 1078-1195 13-114 (135)
113 PLN02789 farnesyltranstransfer 98.5 7.5E-06 1.6E-10 96.3 20.1 183 997-1219 70-266 (320)
114 PRK02603 photosystem I assembl 98.5 4.6E-06 9.9E-11 89.5 16.9 114 991-1117 28-148 (172)
115 KOG0495 HAT repeat protein [RN 98.5 4.5E-05 9.7E-10 92.1 26.3 273 998-1339 516-789 (913)
116 KOG1127 TPR repeat-containing 98.5 1E-05 2.2E-10 101.4 21.4 220 1012-1277 472-699 (1238)
117 COG3071 HemY Uncharacterized e 98.4 0.00013 2.9E-09 84.6 28.8 277 996-1335 82-393 (400)
118 KOG1156 N-terminal acetyltrans 98.4 3.5E-05 7.5E-10 93.6 24.9 234 981-1260 27-260 (700)
119 PF09976 TPR_21: Tetratricopep 98.4 1.4E-05 3E-10 83.4 19.1 136 997-1151 10-145 (145)
120 KOG1128 Uncharacterized conser 98.4 2.1E-05 4.6E-10 96.5 21.9 167 1005-1202 457-623 (777)
121 PLN03088 SGT1, suppressor of 98.4 2.5E-06 5.4E-11 102.3 13.8 97 999-1111 3-99 (356)
122 KOG0553 TPR repeat-containing 98.4 2.2E-06 4.9E-11 96.0 12.2 101 1038-1154 79-179 (304)
123 TIGR02795 tol_pal_ybgF tol-pal 98.4 4.5E-06 9.7E-11 82.7 13.0 104 998-1111 2-105 (119)
124 PF13525 YfiO: Outer membrane 98.4 4.4E-05 9.5E-10 84.3 21.8 169 1039-1233 4-197 (203)
125 TIGR02795 tol_pal_ybgF tol-pal 98.4 5.4E-06 1.2E-10 82.1 13.1 104 1041-1154 3-106 (119)
126 PLN03077 Protein ECB2; Provisi 98.3 4.6E-05 1E-09 102.3 26.0 230 998-1277 323-617 (857)
127 PF09976 TPR_21: Tetratricopep 98.3 3E-05 6.5E-10 80.8 18.7 123 1052-1193 23-145 (145)
128 PLN03077 Protein ECB2; Provisi 98.3 0.0001 2.2E-09 99.0 28.6 244 1040-1332 424-720 (857)
129 KOG2376 Signal recognition par 98.3 5.1E-05 1.1E-09 91.3 22.4 204 1000-1238 14-248 (652)
130 KOG1585 Protein required for f 98.3 0.00015 3.3E-09 78.9 23.7 223 996-1238 29-251 (308)
131 KOG3617 WD40 and TPR repeat-co 98.3 0.00015 3.2E-09 89.1 25.8 149 1004-1192 832-993 (1416)
132 PRK10866 outer membrane biogen 98.3 8.3E-05 1.8E-09 84.4 22.8 173 1040-1238 32-236 (243)
133 PLN03088 SGT1, suppressor of 98.3 5.7E-06 1.2E-10 99.2 13.5 96 1043-1154 5-100 (356)
134 PF12688 TPR_5: Tetratrico pep 98.2 2.2E-05 4.8E-10 78.7 14.4 102 1041-1152 2-103 (120)
135 PRK14720 transcript cleavage f 98.2 4E-05 8.6E-10 99.3 20.4 213 1033-1277 24-251 (906)
136 KOG1127 TPR repeat-containing 98.2 4.9E-05 1.1E-09 95.6 19.9 225 984-1247 478-702 (1238)
137 KOG1585 Protein required for f 98.2 0.0007 1.5E-08 73.9 25.7 222 1033-1271 24-249 (308)
138 KOG1128 Uncharacterized conser 98.2 8.5E-05 1.8E-09 91.4 21.1 213 1037-1280 395-618 (777)
139 KOG2047 mRNA splicing factor [ 98.2 0.00084 1.8E-08 81.5 28.4 246 1004-1277 353-614 (835)
140 COG4783 Putative Zn-dependent 98.2 0.00016 3.4E-09 86.0 22.2 132 1038-1193 304-435 (484)
141 PF12569 NARP1: NMDA receptor- 98.2 0.00074 1.6E-08 84.2 29.3 244 998-1277 38-333 (517)
142 PRK10153 DNA-binding transcrip 98.2 4.7E-05 1E-09 95.2 18.2 142 990-1154 331-483 (517)
143 KOG2047 mRNA splicing factor [ 98.1 0.00088 1.9E-08 81.4 26.5 232 997-1238 247-501 (835)
144 PF12688 TPR_5: Tetratrico pep 98.1 7.3E-05 1.6E-09 75.1 14.5 102 999-1110 2-103 (120)
145 KOG0543 FKBP-type peptidyl-pro 98.1 3.7E-05 8.1E-10 89.7 13.9 138 1040-1193 208-353 (397)
146 cd00189 TPR Tetratricopeptide 98.0 2.4E-05 5.2E-10 72.0 9.4 96 1042-1153 2-97 (100)
147 cd00189 TPR Tetratricopeptide 98.0 2.8E-05 6.1E-10 71.5 9.4 96 1000-1111 2-97 (100)
148 KOG0543 FKBP-type peptidyl-pro 98.0 7.6E-05 1.6E-09 87.2 14.6 139 998-1152 208-354 (397)
149 PRK10803 tol-pal system protei 98.0 0.0001 2.2E-09 84.3 15.5 104 1041-1154 143-247 (263)
150 COG4783 Putative Zn-dependent 98.0 0.00032 6.9E-09 83.5 19.7 162 998-1212 306-467 (484)
151 PF12895 Apc3: Anaphase-promot 98.0 5.2E-05 1.1E-09 71.2 10.6 84 1094-1192 1-84 (84)
152 PRK10803 tol-pal system protei 98.0 0.00013 2.7E-09 83.6 15.7 106 997-1112 141-247 (263)
153 KOG3785 Uncharacterized conser 98.0 0.00066 1.4E-08 77.0 20.7 136 1000-1152 59-213 (557)
154 PF12895 Apc3: Anaphase-promot 98.0 3.3E-05 7.2E-10 72.5 9.1 84 1010-1108 1-84 (84)
155 KOG2300 Uncharacterized conser 98.0 0.0017 3.7E-08 76.8 24.5 225 1008-1255 285-524 (629)
156 PF13414 TPR_11: TPR repeat; P 98.0 3.3E-05 7.2E-10 69.3 8.6 64 1040-1111 3-67 (69)
157 KOG3060 Uncharacterized conser 98.0 0.0028 6E-08 69.9 24.6 162 1003-1196 57-221 (289)
158 PF13414 TPR_11: TPR repeat; P 97.9 3.4E-05 7.4E-10 69.3 8.3 65 997-1069 2-67 (69)
159 KOG4340 Uncharacterized conser 97.9 0.00023 4.9E-09 79.2 15.2 182 1009-1238 21-202 (459)
160 KOG3785 Uncharacterized conser 97.9 0.00075 1.6E-08 76.6 19.4 86 1008-1108 32-117 (557)
161 PRK11906 transcriptional regul 97.9 0.0002 4.4E-09 85.7 15.8 167 997-1191 252-432 (458)
162 KOG3060 Uncharacterized conser 97.9 0.0036 7.9E-08 69.0 24.0 196 1013-1247 27-222 (289)
163 COG2909 MalT ATP-dependent tra 97.9 0.0077 1.7E-07 76.6 29.5 261 1001-1277 418-687 (894)
164 KOG4340 Uncharacterized conser 97.9 0.00085 1.8E-08 74.7 18.6 170 990-1195 38-207 (459)
165 COG3071 HemY Uncharacterized e 97.8 0.0024 5.1E-08 74.5 21.8 264 1040-1335 84-360 (400)
166 KOG4555 TPR repeat-containing 97.8 0.00096 2.1E-08 66.2 15.6 101 1042-1154 45-145 (175)
167 PRK10153 DNA-binding transcrip 97.8 0.00033 7.2E-09 87.7 15.9 124 1055-1206 357-488 (517)
168 PF10345 Cohesin_load: Cohesin 97.8 0.053 1.2E-06 70.1 36.1 335 977-1333 37-434 (608)
169 KOG4555 TPR repeat-containing 97.7 0.00093 2E-08 66.3 14.8 102 998-1111 43-144 (175)
170 KOG2300 Uncharacterized conser 97.7 0.0048 1E-07 73.1 22.9 202 1000-1218 325-535 (629)
171 KOG1915 Cell cycle control pro 97.7 0.03 6.5E-07 66.4 29.2 300 988-1334 197-538 (677)
172 COG4105 ComL DNA uptake lipopr 97.7 0.0061 1.3E-07 68.1 21.8 172 997-1188 33-226 (254)
173 KOG3617 WD40 and TPR repeat-co 97.7 0.068 1.5E-06 66.8 32.2 194 998-1193 912-1172(1416)
174 KOG3616 Selective LIM binding 97.6 0.024 5.1E-07 69.6 27.3 202 986-1192 649-908 (1636)
175 PF13432 TPR_16: Tetratricopep 97.6 0.00017 3.7E-09 64.0 7.1 60 1002-1069 1-60 (65)
176 PF09295 ChAPs: ChAPs (Chs5p-A 97.5 0.001 2.2E-08 80.1 14.7 118 1005-1149 176-293 (395)
177 COG1729 Uncharacterized protei 97.5 0.00043 9.3E-09 77.7 10.6 102 1043-1154 144-245 (262)
178 COG0457 NrfG FOG: TPR repeat [ 97.5 0.017 3.8E-07 61.3 22.3 202 997-1238 58-260 (291)
179 PF13432 TPR_16: Tetratricopep 97.5 0.0005 1.1E-08 60.9 8.4 61 1086-1154 1-61 (65)
180 KOG1070 rRNA processing protei 97.5 0.0048 1E-07 80.7 20.1 172 1078-1277 1454-1628(1710)
181 COG2909 MalT ATP-dependent tra 97.5 0.034 7.4E-07 70.9 27.1 225 996-1238 456-683 (894)
182 COG1729 Uncharacterized protei 97.5 0.00082 1.8E-08 75.5 11.5 106 997-1112 140-245 (262)
183 KOG1586 Protein required for f 97.4 0.0076 1.6E-07 65.7 17.5 153 1012-1194 28-182 (288)
184 KOG3616 Selective LIM binding 97.4 0.13 2.9E-06 63.3 29.6 107 1083-1192 662-791 (1636)
185 KOG1586 Protein required for f 97.4 0.021 4.5E-07 62.4 20.7 185 998-1192 34-221 (288)
186 KOG1070 rRNA processing protei 97.4 0.011 2.3E-07 77.7 21.7 205 1036-1277 1454-1662(1710)
187 PF09295 ChAPs: ChAPs (Chs5p-A 97.4 0.0022 4.8E-08 77.3 14.8 120 1046-1192 175-294 (395)
188 PLN03098 LPA1 LOW PSII ACCUMUL 97.4 0.0006 1.3E-08 81.6 9.7 72 1077-1153 70-141 (453)
189 PF04733 Coatomer_E: Coatomer 97.4 0.0019 4.2E-08 75.2 13.8 166 1042-1252 104-272 (290)
190 PF04733 Coatomer_E: Coatomer 97.4 0.00094 2E-08 77.8 11.1 168 1000-1209 104-274 (290)
191 PF10345 Cohesin_load: Cohesin 97.4 1 2.2E-05 58.4 39.9 289 1035-1335 54-393 (608)
192 PRK11906 transcriptional regul 97.4 0.0037 7.9E-08 75.2 16.0 132 1043-1195 258-401 (458)
193 COG4105 ComL DNA uptake lipopr 97.3 0.027 6E-07 63.0 21.5 173 1040-1238 34-228 (254)
194 PLN03098 LPA1 LOW PSII ACCUMUL 97.3 0.00076 1.7E-08 80.7 9.3 72 1035-1111 70-141 (453)
195 COG4785 NlpI Lipoprotein NlpI, 97.3 0.0089 1.9E-07 64.4 16.0 99 995-1109 62-160 (297)
196 PF13512 TPR_18: Tetratricopep 97.3 0.0034 7.3E-08 64.5 12.5 106 997-1112 9-129 (142)
197 KOG4234 TPR repeat-containing 97.3 0.0035 7.6E-08 66.6 12.8 104 997-1111 94-197 (271)
198 PRK15331 chaperone protein Sic 97.3 0.0014 3E-08 68.7 9.9 101 1036-1152 33-133 (165)
199 COG0457 NrfG FOG: TPR repeat [ 97.3 0.11 2.4E-06 55.0 25.3 228 1011-1278 36-265 (291)
200 PRK15331 chaperone protein Sic 97.3 0.0014 3.1E-08 68.5 9.9 101 994-1110 33-133 (165)
201 PF13374 TPR_10: Tetratricopep 97.3 0.00045 9.7E-09 55.2 4.9 42 1039-1080 1-42 (42)
202 PF13374 TPR_10: Tetratricopep 97.2 0.00051 1.1E-08 54.9 5.1 42 1081-1122 1-42 (42)
203 KOG3965 Uncharacterized conser 97.2 0.00077 1.7E-08 67.7 6.2 80 245-330 47-129 (160)
204 COG4235 Cytochrome c biogenesi 97.2 0.0047 1E-07 70.4 13.3 123 988-1130 146-271 (287)
205 PF08631 SPO22: Meiosis protei 97.1 0.17 3.7E-06 58.8 26.0 142 1008-1154 3-151 (278)
206 PF13512 TPR_18: Tetratricopep 97.0 0.0067 1.5E-07 62.3 12.1 105 1040-1154 10-129 (142)
207 KOG4648 Uncharacterized conser 97.0 0.0031 6.7E-08 71.6 9.9 95 1001-1111 100-194 (536)
208 COG4235 Cytochrome c biogenesi 97.0 0.014 2.9E-07 66.7 15.2 119 1036-1174 152-273 (287)
209 KOG4234 TPR repeat-containing 97.0 0.0053 1.2E-07 65.3 10.9 98 1087-1195 100-197 (271)
210 KOG3081 Vesicle coat complex C 97.0 0.099 2.2E-06 58.5 20.8 120 1044-1194 112-235 (299)
211 COG4700 Uncharacterized protei 96.9 0.029 6.2E-07 59.3 15.7 162 1005-1197 63-224 (251)
212 PF10300 DUF3808: Protein of u 96.9 0.032 7E-07 69.5 19.2 185 1010-1214 200-395 (468)
213 KOG1915 Cell cycle control pro 96.9 1.3 2.8E-05 53.2 30.3 188 1078-1277 204-432 (677)
214 KOG4642 Chaperone-dependent E3 96.9 0.0039 8.4E-08 68.2 9.3 105 995-1115 7-111 (284)
215 PF04184 ST7: ST7 protein; In 96.9 0.051 1.1E-06 65.6 19.0 129 1006-1150 176-321 (539)
216 PF12968 DUF3856: Domain of Un 96.9 0.057 1.2E-06 53.1 15.7 121 1038-1159 5-135 (144)
217 COG5159 RPN6 26S proteasome re 96.8 0.15 3.3E-06 57.2 20.8 205 1002-1211 7-249 (421)
218 PF13371 TPR_9: Tetratricopept 96.8 0.0065 1.4E-07 55.0 8.4 58 1046-1111 1-58 (73)
219 PF04184 ST7: ST7 protein; In 96.7 0.089 1.9E-06 63.6 19.6 128 1049-1192 177-321 (539)
220 COG4785 NlpI Lipoprotein NlpI, 96.7 0.045 9.8E-07 59.2 15.5 198 1036-1278 61-266 (297)
221 PF13371 TPR_9: Tetratricopept 96.7 0.0056 1.2E-07 55.4 7.6 57 1005-1069 2-58 (73)
222 PF14559 TPR_19: Tetratricopep 96.7 0.0034 7.5E-08 55.9 5.8 54 1008-1069 1-54 (68)
223 cd01807 GDX_N ubiquitin-like d 96.6 0.0044 9.6E-08 56.8 6.4 73 84-164 1-73 (74)
224 PF12968 DUF3856: Domain of Un 96.6 0.13 2.8E-06 50.7 16.4 120 998-1118 7-136 (144)
225 KOG2471 TPR repeat-containing 96.6 0.15 3.3E-06 60.9 20.1 114 998-1112 240-365 (696)
226 PF14559 TPR_19: Tetratricopep 96.6 0.0037 8.1E-08 55.7 5.7 55 1092-1154 1-55 (68)
227 KOG2610 Uncharacterized conser 96.6 0.24 5.3E-06 56.8 20.7 161 1046-1238 109-271 (491)
228 KOG1463 26S proteasome regulat 96.5 0.34 7.5E-06 55.8 21.5 260 999-1277 49-315 (411)
229 COG4700 Uncharacterized protei 96.5 0.076 1.7E-06 56.3 15.1 152 1050-1238 66-217 (251)
230 KOG2796 Uncharacterized conser 96.5 0.041 8.9E-07 61.0 13.6 158 998-1177 177-334 (366)
231 PF09986 DUF2225: Uncharacteri 96.5 0.03 6.6E-07 62.3 12.7 101 1094-1195 89-194 (214)
232 PF09986 DUF2225: Uncharacteri 96.4 0.035 7.6E-07 61.8 12.8 101 1010-1111 89-194 (214)
233 COG3898 Uncharacterized membra 96.4 1.6 3.4E-05 51.5 25.9 268 1000-1336 122-396 (531)
234 PF10300 DUF3808: Protein of u 96.4 0.085 1.8E-06 65.8 17.6 140 1011-1169 246-392 (468)
235 PF02259 FAT: FAT domain; Int 96.4 1.1 2.4E-05 53.3 26.8 179 1000-1194 31-212 (352)
236 KOG4648 Uncharacterized conser 96.4 0.011 2.4E-07 67.2 8.6 96 1043-1154 100-195 (536)
237 PF08631 SPO22: Meiosis protei 96.3 1.5 3.3E-05 50.9 26.7 141 1050-1195 3-150 (278)
238 KOG2796 Uncharacterized conser 96.3 0.15 3.3E-06 56.7 16.7 157 1040-1218 177-333 (366)
239 cd01794 DC_UbP_C dendritic cel 96.3 0.0092 2E-07 54.2 5.9 68 86-161 1-68 (70)
240 KOG4642 Chaperone-dependent E3 96.2 0.02 4.2E-07 62.9 9.3 101 1041-1157 11-111 (284)
241 PF13281 DUF4071: Domain of un 96.2 0.72 1.6E-05 55.3 23.1 162 1011-1192 112-285 (374)
242 cd01798 parkin_N amino-termina 96.2 0.0095 2E-07 54.0 5.9 69 86-162 1-69 (70)
243 PF03704 BTAD: Bacterial trans 96.2 0.11 2.3E-06 54.0 14.7 112 1084-1203 8-133 (146)
244 KOG2610 Uncharacterized conser 96.1 0.76 1.6E-05 52.9 20.9 165 1004-1192 109-273 (491)
245 cd01810 ISG15_repeat2 ISG15 ub 96.0 0.015 3.2E-07 53.4 6.2 70 86-163 1-70 (74)
246 PTZ00044 ubiquitin; Provisiona 96.0 0.016 3.5E-07 53.3 6.4 71 85-163 2-72 (76)
247 PF03704 BTAD: Bacterial trans 96.0 0.13 2.8E-06 53.4 14.0 113 999-1119 7-133 (146)
248 cd01804 midnolin_N Ubiquitin-l 96.0 0.017 3.8E-07 53.5 6.5 72 84-164 2-73 (78)
249 KOG1464 COP9 signalosome, subu 95.9 0.4 8.7E-06 53.5 17.6 211 1011-1238 40-255 (440)
250 KOG3081 Vesicle coat complex C 95.9 0.64 1.4E-05 52.3 19.0 166 1000-1208 110-279 (299)
251 cd01806 Nedd8 Nebb8-like ubiq 95.9 0.022 4.7E-07 52.2 6.6 72 84-163 1-72 (76)
252 PF00240 ubiquitin: Ubiquitin 95.8 0.018 4E-07 51.8 5.7 68 89-164 1-68 (69)
253 PF10602 RPN7: 26S proteasome 95.8 0.19 4.2E-06 54.3 14.6 111 1079-1196 33-143 (177)
254 cd01802 AN1_N ubiquitin-like d 95.8 0.023 5E-07 55.6 6.7 73 83-163 27-99 (103)
255 KOG2041 WD40 repeat protein [G 95.8 1.7 3.8E-05 54.1 23.4 128 1034-1192 790-936 (1189)
256 KOG1464 COP9 signalosome, subu 95.7 0.61 1.3E-05 52.1 17.6 209 1053-1277 40-259 (440)
257 cd01808 hPLIC_N Ubiquitin-like 95.6 0.027 5.9E-07 51.1 6.2 70 84-162 1-70 (71)
258 KOG0545 Aryl-hydrocarbon recep 95.6 0.16 3.5E-06 56.0 12.8 106 998-1111 178-293 (329)
259 KOG0551 Hsp90 co-chaperone CNS 95.6 0.084 1.8E-06 60.6 11.1 108 993-1112 76-183 (390)
260 cd01792 ISG15_repeat1 ISG15 ub 95.6 0.029 6.3E-07 52.3 6.3 74 84-165 3-78 (80)
261 KOG2471 TPR repeat-containing 95.6 0.034 7.3E-07 66.1 8.0 130 1039-1177 239-380 (696)
262 PF10602 RPN7: 26S proteasome 95.5 0.26 5.6E-06 53.3 14.4 127 1019-1154 17-143 (177)
263 COG3898 Uncharacterized membra 95.4 7.8 0.00017 45.9 25.9 242 998-1287 84-330 (531)
264 cd01797 NIRF_N amino-terminal 95.3 0.046 9.9E-07 50.7 6.4 73 84-164 1-75 (78)
265 cd01809 Scythe_N Ubiquitin-lik 95.3 0.044 9.5E-07 49.6 6.2 71 84-162 1-71 (72)
266 COG2976 Uncharacterized protei 95.2 0.66 1.4E-05 50.1 15.5 98 1084-1195 91-188 (207)
267 KOG0985 Vesicle coat protein c 95.1 1.9 4E-05 56.0 21.4 193 1041-1272 1105-1335(1666)
268 cd01790 Herp_N Homocysteine-re 95.1 0.055 1.2E-06 50.1 6.2 73 84-162 2-78 (79)
269 KOG0545 Aryl-hydrocarbon recep 95.0 0.19 4.2E-06 55.4 11.2 107 1040-1154 178-294 (329)
270 KOG2041 WD40 repeat protein [G 95.0 4 8.6E-05 51.1 23.1 59 577-642 370-433 (1189)
271 cd01803 Ubiquitin Ubiquitin. U 95.0 0.058 1.2E-06 49.4 6.3 72 84-163 1-72 (76)
272 cd01796 DDI1_N DNA damage indu 94.8 0.056 1.2E-06 49.2 5.5 67 86-160 1-69 (71)
273 cd01793 Fubi Fubi ubiquitin-li 94.8 0.076 1.7E-06 48.7 6.4 70 84-163 1-70 (74)
274 COG5159 RPN6 26S proteasome re 94.7 5.8 0.00013 45.1 21.5 224 1045-1285 8-242 (421)
275 cd01805 RAD23_N Ubiquitin-like 94.6 0.09 2E-06 48.4 6.7 71 84-161 1-72 (77)
276 PF12862 Apc5: Anaphase-promot 94.6 0.39 8.4E-06 46.2 11.1 82 1008-1091 8-90 (94)
277 PF13176 TPR_7: Tetratricopept 94.6 0.076 1.6E-06 41.4 5.0 31 1126-1156 1-31 (36)
278 cd01763 Sumo Small ubiquitin-r 94.5 0.17 3.7E-06 48.0 8.3 78 77-162 5-82 (87)
279 PF12862 Apc5: Anaphase-promot 94.5 0.48 1E-05 45.6 11.5 82 1050-1133 8-90 (94)
280 KOG2053 Mitochondrial inherita 94.4 4.3 9.3E-05 52.6 22.4 192 1010-1238 21-214 (932)
281 KOG0551 Hsp90 co-chaperone CNS 94.4 0.5 1.1E-05 54.5 13.0 105 1038-1154 79-183 (390)
282 PF13176 TPR_7: Tetratricopept 94.3 0.087 1.9E-06 41.1 4.9 31 1042-1072 1-31 (36)
283 PF02259 FAT: FAT domain; Int 94.3 4.3 9.3E-05 48.3 21.8 149 977-1137 124-305 (352)
284 PF11817 Foie-gras_1: Foie gra 94.2 10 0.00022 43.4 23.5 185 1002-1190 14-242 (247)
285 KOG1550 Extracellular protein 94.2 2.9 6.4E-05 53.5 21.2 150 1013-1195 227-393 (552)
286 cd01791 Ubl5 UBL5 ubiquitin-li 94.1 0.14 3E-06 46.9 6.5 70 84-161 2-71 (73)
287 PF00515 TPR_1: Tetratricopept 94.1 0.1 2.3E-06 39.7 4.9 31 1124-1154 1-31 (34)
288 KOG3783 Uncharacterized conser 94.1 21 0.00045 44.4 27.1 233 983-1246 254-521 (546)
289 COG3118 Thioredoxin domain-con 94.1 1.5 3.3E-05 50.3 15.9 195 953-1182 87-288 (304)
290 COG2976 Uncharacterized protei 94.1 2.3 5E-05 46.1 16.3 100 1041-1154 90-189 (207)
291 KOG2053 Mitochondrial inherita 94.1 3.5 7.6E-05 53.3 20.6 108 1052-1184 21-128 (932)
292 cd01812 BAG1_N Ubiquitin-like 94.1 0.12 2.6E-06 46.7 6.0 70 84-162 1-70 (71)
293 PF00515 TPR_1: Tetratricopept 93.9 0.11 2.4E-06 39.6 4.7 30 1040-1069 1-30 (34)
294 COG0790 FOG: TPR repeat, SEL1 93.9 2.8 6.2E-05 48.8 18.9 144 999-1180 74-236 (292)
295 KOG4322 Anaphase-promoting com 93.8 12 0.00025 45.2 22.7 187 1033-1232 266-457 (482)
296 PF06552 TOM20_plant: Plant sp 93.6 0.34 7.4E-06 51.7 9.2 91 1014-1113 7-104 (186)
297 KOG1463 26S proteasome regulat 93.6 7.2 0.00016 45.5 20.0 223 1012-1259 102-327 (411)
298 PF00789 UBX: UBX domain; Int 93.5 0.2 4.3E-06 46.8 6.6 74 82-160 5-80 (82)
299 PF07719 TPR_2: Tetratricopept 93.4 0.16 3.4E-06 38.4 4.7 30 1040-1069 1-30 (34)
300 PF13281 DUF4071: Domain of un 93.3 3.2 6.9E-05 49.9 17.7 130 1055-1195 114-255 (374)
301 PF05843 Suf: Suppressor of fo 93.3 0.6 1.3E-05 54.4 11.6 133 1043-1196 4-137 (280)
302 PF13428 TPR_14: Tetratricopep 93.2 0.16 3.5E-06 41.4 4.8 42 1041-1090 2-43 (44)
303 PF07719 TPR_2: Tetratricopept 93.2 0.18 4E-06 38.1 4.9 31 1124-1154 1-31 (34)
304 PF06552 TOM20_plant: Plant sp 93.1 0.79 1.7E-05 49.0 10.9 79 1120-1199 21-106 (186)
305 COG0790 FOG: TPR repeat, SEL1 93.1 11 0.00023 44.0 21.7 163 1009-1218 52-233 (292)
306 KOG1550 Extracellular protein 93.0 1.9 4.2E-05 55.1 16.6 149 1055-1238 227-388 (552)
307 KOG0376 Serine-threonine phosp 92.9 0.13 2.8E-06 62.1 5.3 98 998-1111 4-101 (476)
308 PF13431 TPR_17: Tetratricopep 92.7 0.093 2E-06 40.5 2.5 34 1062-1103 1-34 (34)
309 PF04910 Tcf25: Transcriptiona 92.7 5.7 0.00012 48.0 19.0 151 1036-1196 36-223 (360)
310 PF13428 TPR_14: Tetratricopep 92.7 0.2 4.4E-06 40.8 4.7 42 999-1048 2-43 (44)
311 PF13431 TPR_17: Tetratricopep 92.5 0.086 1.9E-06 40.6 2.2 33 1020-1060 1-33 (34)
312 PF13181 TPR_8: Tetratricopept 92.3 0.3 6.6E-06 37.0 5.0 30 1125-1154 2-31 (34)
313 PF13181 TPR_8: Tetratricopept 92.0 0.3 6.4E-06 37.1 4.6 31 1040-1070 1-31 (34)
314 PF04910 Tcf25: Transcriptiona 92.0 6.7 0.00014 47.4 18.4 160 983-1154 28-223 (360)
315 PF05843 Suf: Suppressor of fo 91.9 1 2.2E-05 52.4 11.1 133 1001-1154 4-137 (280)
316 KOG4014 Uncharacterized conser 91.8 3.7 8E-05 43.8 13.6 164 954-1158 35-238 (248)
317 TIGR00601 rad23 UV excision re 91.8 0.31 6.8E-06 58.6 6.8 75 84-164 1-77 (378)
318 KOG2581 26S proteasome regulat 91.3 37 0.0008 40.8 22.3 145 1004-1154 132-277 (493)
319 PF11207 DUF2989: Protein of u 90.8 4.2 9.2E-05 44.5 13.4 141 1017-1188 60-200 (203)
320 KOG1308 Hsp70-interacting prot 90.7 0.18 4E-06 58.3 3.2 95 1001-1111 117-211 (377)
321 PF11976 Rad60-SLD: Ubiquitin- 90.7 0.3 6.5E-06 44.3 4.0 71 84-161 1-71 (72)
322 smart00166 UBX Domain present 90.6 0.88 1.9E-05 42.4 7.1 71 84-160 5-78 (80)
323 KOG0985 Vesicle coat protein c 90.2 36 0.00078 45.1 22.3 173 994-1197 1100-1310(1666)
324 KOG0376 Serine-threonine phosp 90.1 0.38 8.2E-06 58.2 5.2 95 1044-1154 8-102 (476)
325 KOG4563 Cell cycle-regulated h 90.0 4.3 9.4E-05 47.7 13.2 202 995-1196 38-326 (400)
326 cd01767 UBX UBX (ubiquitin reg 89.4 1.6 3.4E-05 40.3 7.8 45 84-130 3-47 (77)
327 COG3118 Thioredoxin domain-con 89.3 11 0.00025 43.4 15.8 136 1045-1207 139-274 (304)
328 cd01770 p47_UBX p47-like ubiqu 89.2 1.5 3.2E-05 40.9 7.3 48 83-130 4-51 (79)
329 cd01800 SF3a120_C Ubiquitin-li 89.0 0.76 1.7E-05 42.3 5.3 64 93-164 7-70 (76)
330 KOG4322 Anaphase-promoting com 88.8 33 0.00071 41.6 19.4 222 1048-1277 239-470 (482)
331 KOG0010 Ubiquitin-like protein 88.4 0.71 1.5E-05 56.0 5.8 75 82-165 14-88 (493)
332 KOG1258 mRNA processing protei 88.3 59 0.0013 41.1 22.1 193 1035-1260 292-485 (577)
333 PF00244 14-3-3: 14-3-3 protei 88.3 22 0.00049 40.3 17.6 175 1043-1238 4-193 (236)
334 KOG3783 Uncharacterized conser 88.2 27 0.00059 43.4 18.9 184 997-1195 302-520 (546)
335 PF00244 14-3-3: 14-3-3 protei 88.2 52 0.0011 37.4 24.5 183 1000-1201 3-204 (236)
336 KOG1538 Uncharacterized conser 87.7 40 0.00086 42.5 19.7 125 1044-1191 636-772 (1081)
337 COG5187 RPN7 26S proteasome re 87.5 17 0.00038 41.5 15.4 134 1055-1197 90-223 (412)
338 PF12739 TRAPPC-Trs85: ER-Golg 87.4 24 0.00052 43.6 18.6 179 999-1197 209-401 (414)
339 COG5187 RPN7 26S proteasome re 86.7 17 0.00036 41.6 14.7 144 1003-1155 80-223 (412)
340 KOG4507 Uncharacterized conser 86.6 1.2 2.6E-05 54.7 6.2 110 1085-1214 610-719 (886)
341 PF11817 Foie-gras_1: Foie gra 86.4 66 0.0014 36.7 23.4 183 1044-1236 14-240 (247)
342 smart00213 UBQ Ubiquitin homol 86.4 1 2.2E-05 39.3 4.4 62 84-153 1-62 (64)
343 PF10579 Rapsyn_N: Rapsyn N-te 86.2 7.2 0.00015 36.2 9.5 72 997-1073 5-76 (80)
344 KOG1538 Uncharacterized conser 86.0 87 0.0019 39.7 21.2 178 1004-1238 638-828 (1081)
345 PF10579 Rapsyn_N: Rapsyn N-te 85.9 7.4 0.00016 36.1 9.5 69 1084-1157 8-76 (80)
346 KOG4014 Uncharacterized conser 85.8 9.5 0.00021 40.8 11.6 156 1012-1199 41-237 (248)
347 cd01813 UBP_N UBP ubiquitin pr 85.7 2 4.3E-05 39.5 6.0 68 85-161 2-72 (74)
348 PF08424 NRDE-2: NRDE-2, neces 85.7 34 0.00074 40.7 18.0 128 1014-1154 47-184 (321)
349 PF08424 NRDE-2: NRDE-2, neces 85.5 54 0.0012 39.1 19.6 126 1057-1195 48-183 (321)
350 KOG4814 Uncharacterized conser 85.4 39 0.00085 42.7 18.1 69 1125-1195 355-423 (872)
351 PF12739 TRAPPC-Trs85: ER-Golg 85.0 45 0.00097 41.2 19.2 130 1041-1176 209-351 (414)
352 smart00101 14_3_3 14-3-3 homol 85.0 78 0.0017 36.2 22.5 186 1001-1199 4-204 (244)
353 KOG0890 Protein kinase of the 84.8 1.2E+02 0.0026 44.3 24.3 176 992-1178 1664-1858(2382)
354 KOG2561 Adaptor protein NUB1, 84.8 62 0.0013 39.2 18.7 118 998-1115 163-300 (568)
355 KOG1308 Hsp70-interacting prot 84.1 0.52 1.1E-05 54.7 1.7 89 1049-1153 123-211 (377)
356 KOG1914 mRNA cleavage and poly 84.1 49 0.0011 41.2 17.9 163 1087-1278 291-464 (656)
357 PF10516 SHNi-TPR: SHNi-TPR; 83.5 2.4 5.1E-05 33.7 4.6 35 1041-1075 2-36 (38)
358 cd01769 UBL Ubiquitin-like dom 83.4 3 6.5E-05 36.9 6.0 67 88-162 2-68 (69)
359 PF10516 SHNi-TPR: SHNi-TPR; 83.3 2.5 5.4E-05 33.6 4.7 36 1125-1160 2-37 (38)
360 PF13174 TPR_6: Tetratricopept 82.6 1.8 3.9E-05 32.2 3.7 29 1126-1154 2-30 (33)
361 PF13174 TPR_6: Tetratricopept 82.6 1.8 3.9E-05 32.2 3.6 29 1041-1069 1-29 (33)
362 KOG1914 mRNA cleavage and poly 82.6 1E+02 0.0022 38.6 19.7 171 1003-1195 291-464 (656)
363 KOG0686 COP9 signalosome, subu 82.4 14 0.00031 44.1 12.4 104 1081-1192 149-255 (466)
364 PF10952 DUF2753: Protein of u 82.2 15 0.00033 36.8 10.6 73 1043-1115 4-83 (140)
365 KOG2561 Adaptor protein NUB1, 82.0 1.3E+02 0.0029 36.6 20.8 115 1084-1199 165-300 (568)
366 KOG4814 Uncharacterized conser 81.8 1.6E+02 0.0035 37.6 23.7 107 1082-1198 354-460 (872)
367 cd01772 SAKS1_UBX SAKS1-like U 81.8 6.5 0.00014 36.6 7.7 46 84-131 5-50 (79)
368 cd09239 BRO1_HD-PTP_like Prote 81.7 98 0.0021 37.5 19.8 124 922-1047 21-181 (361)
369 KOG4507 Uncharacterized conser 81.6 17 0.00037 45.2 12.9 99 1041-1153 213-312 (886)
370 PF09670 Cas_Cas02710: CRISPR- 81.3 48 0.001 40.4 17.2 146 993-1156 126-273 (379)
371 PF08626 TRAPPC9-Trs120: Trans 81.3 29 0.00063 48.7 17.2 156 1039-1198 241-477 (1185)
372 PF08626 TRAPPC9-Trs120: Trans 81.2 1.7E+02 0.0037 41.3 24.6 155 997-1155 241-476 (1185)
373 KOG1920 IkappaB kinase complex 81.2 2.1E+02 0.0046 39.2 23.3 59 1135-1193 919-979 (1265)
374 cd09242 BRO1_ScBro1_like Prote 81.2 67 0.0015 38.7 18.2 74 974-1047 83-173 (348)
375 PF09613 HrpB1_HrpK: Bacterial 81.0 12 0.00026 39.7 10.1 89 995-1099 7-95 (160)
376 PF10255 Paf67: RNA polymerase 80.1 22 0.00048 43.3 13.5 121 947-1073 77-197 (404)
377 smart00028 TPR Tetratricopepti 79.2 2.2 4.8E-05 30.1 3.1 29 1125-1153 2-30 (34)
378 KOG4521 Nuclear pore complex, 79.2 1.5E+02 0.0033 40.2 20.7 145 996-1184 918-1072(1480)
379 KOG0687 26S proteasome regulat 79.2 50 0.0011 38.7 14.9 132 1015-1155 81-212 (393)
380 KOG0508 Ankyrin repeat protein 79.0 1.8 4E-05 51.9 3.8 136 1082-1220 245-391 (615)
381 PF15015 NYD-SP12_N: Spermatog 78.9 34 0.00074 41.2 13.8 106 1002-1115 180-295 (569)
382 KOG0687 26S proteasome regulat 78.8 42 0.00091 39.3 14.1 131 1057-1196 81-211 (393)
383 smart00101 14_3_3 14-3-3 homol 78.8 1.3E+02 0.0028 34.5 21.4 178 1043-1238 4-195 (244)
384 cd01774 Faf1_like2_UBX Faf1 ik 78.6 4.9 0.00011 38.0 5.8 46 83-130 4-49 (85)
385 KOG0508 Ankyrin repeat protein 78.0 2.8 6E-05 50.4 4.8 136 997-1135 244-390 (615)
386 PF09670 Cas_Cas02710: CRISPR- 77.9 95 0.0021 37.9 18.2 138 1084-1247 133-272 (379)
387 KOG0686 COP9 signalosome, subu 77.6 30 0.00064 41.6 12.9 109 1038-1151 148-256 (466)
388 PF11207 DUF2989: Protein of u 77.5 9.4 0.0002 41.9 8.3 100 1028-1146 101-200 (203)
389 PF09613 HrpB1_HrpK: Bacterial 77.3 19 0.00042 38.1 10.3 89 1079-1183 7-95 (160)
390 smart00028 TPR Tetratricopepti 77.2 2.7 5.8E-05 29.7 3.0 29 1041-1069 2-30 (34)
391 PF15015 NYD-SP12_N: Spermatog 77.2 32 0.00069 41.4 12.9 101 1047-1155 183-293 (569)
392 COG4649 Uncharacterized protei 76.9 68 0.0015 34.5 13.9 148 1005-1194 46-195 (221)
393 PF04781 DUF627: Protein of un 76.4 30 0.00065 34.4 10.7 102 1004-1111 2-107 (111)
394 PF07079 DUF1347: Protein of u 76.3 1.7E+02 0.0038 36.0 18.8 135 996-1149 377-520 (549)
395 cd01815 BMSC_UbP_N Ubiquitin-l 76.1 3.9 8.4E-05 37.7 4.2 55 101-162 18-74 (75)
396 KOG2581 26S proteasome regulat 76.1 1.9E+02 0.0042 35.1 22.0 140 1050-1196 136-277 (493)
397 COG4649 Uncharacterized protei 74.2 1.2E+02 0.0026 32.8 14.8 131 1003-1152 63-195 (221)
398 PF04781 DUF627: Protein of un 74.0 45 0.00097 33.2 11.2 101 1088-1194 2-106 (111)
399 cd09246 BRO1_Alix_like_1 Prote 73.8 2.1E+02 0.0046 34.6 19.6 110 922-1031 14-153 (353)
400 COG3629 DnrI DNA-binding trans 73.7 87 0.0019 36.5 15.3 77 1123-1207 152-228 (280)
401 PF10952 DUF2753: Protein of u 73.2 44 0.00096 33.7 10.8 74 1127-1200 4-84 (140)
402 KOG1497 COP9 signalosome, subu 72.8 2E+02 0.0044 33.8 20.9 74 1121-1195 100-173 (399)
403 KOG2422 Uncharacterized conser 72.1 1.8E+02 0.004 36.7 18.0 172 1014-1196 254-449 (665)
404 KOG2114 Vacuolar assembly/sort 72.1 71 0.0015 41.8 15.0 56 1007-1070 343-398 (933)
405 PF14853 Fis1_TPR_C: Fis1 C-te 71.6 14 0.0003 31.8 6.2 29 1041-1069 2-30 (53)
406 PF04053 Coatomer_WDAD: Coatom 71.2 1.2E+02 0.0026 37.8 16.9 26 1126-1151 349-374 (443)
407 KOG1920 IkappaB kinase complex 70.5 1.4E+02 0.0031 40.7 17.7 28 941-968 869-896 (1265)
408 cd09241 BRO1_ScRim20-like Prot 70.3 2.5E+02 0.0055 33.9 20.1 54 995-1048 103-175 (355)
409 PRK10941 hypothetical protein; 69.8 31 0.00068 39.9 10.7 82 1038-1132 179-260 (269)
410 COG3947 Response regulator con 68.5 30 0.00065 39.9 9.7 79 998-1084 279-357 (361)
411 KOG3807 Predicted membrane pro 67.3 2.6E+02 0.0056 32.9 19.1 115 1003-1152 189-303 (556)
412 PF10255 Paf67: RNA polymerase 67.0 41 0.00088 41.2 11.3 74 1084-1157 124-197 (404)
413 KOG0890 Protein kinase of the 67.0 3.6E+02 0.0079 39.8 21.2 110 1036-1155 1666-1786(2382)
414 cd01771 Faf1_UBX Faf1 UBX doma 66.3 27 0.00059 32.7 7.6 46 83-130 4-49 (80)
415 PRK10941 hypothetical protein; 66.2 40 0.00087 39.1 10.6 78 1082-1172 181-258 (269)
416 PF04190 DUF410: Protein of un 66.0 2.5E+02 0.0055 32.3 23.9 149 998-1153 10-170 (260)
417 KOG0011 Nucleotide excision re 65.9 12 0.00026 43.5 6.2 76 84-165 1-77 (340)
418 cd01773 Faf1_like1_UBX Faf1 ik 65.8 13 0.00027 35.0 5.2 45 84-130 6-50 (82)
419 KOG1497 COP9 signalosome, subu 65.7 2.8E+02 0.0061 32.7 18.8 109 1037-1151 100-211 (399)
420 PF07721 TPR_4: Tetratricopept 65.6 6.7 0.00015 28.1 2.7 25 1041-1065 2-26 (26)
421 PF14853 Fis1_TPR_C: Fis1 C-te 65.6 35 0.00075 29.3 7.4 30 1125-1154 2-31 (53)
422 KOG2908 26S proteasome regulat 65.3 3E+02 0.0064 32.8 17.5 92 1092-1186 85-177 (380)
423 TIGR02561 HrpB1_HrpK type III 64.9 39 0.00084 35.5 9.0 88 996-1099 8-95 (153)
424 cd01799 Hoil1_N Ubiquitin-like 64.8 15 0.00032 34.0 5.5 64 89-160 8-72 (75)
425 TIGR02710 CRISPR-associated pr 64.2 1.3E+02 0.0029 36.6 14.7 70 992-1064 124-195 (380)
426 PF14561 TPR_20: Tetratricopep 64.0 33 0.00071 32.8 7.9 33 1078-1110 18-50 (90)
427 KOG2422 Uncharacterized conser 63.8 2.4E+02 0.0051 35.9 16.7 170 1095-1277 251-447 (665)
428 KOG2114 Vacuolar assembly/sort 63.7 57 0.0012 42.6 11.9 46 1107-1153 352-397 (933)
429 PF14561 TPR_20: Tetratricopep 63.4 32 0.00069 32.9 7.7 34 1036-1069 18-51 (90)
430 PF03097 BRO1: BRO1-like domai 63.4 1.7E+02 0.0037 35.5 16.1 126 922-1048 15-174 (377)
431 PF07721 TPR_4: Tetratricopept 63.3 8.3 0.00018 27.7 2.8 25 1125-1149 2-26 (26)
432 PF10858 DUF2659: Protein of u 63.2 2.1E+02 0.0046 30.5 14.2 102 1046-1153 99-200 (220)
433 PLN02560 enoyl-CoA reductase 62.7 19 0.00042 42.5 7.3 77 84-162 1-82 (308)
434 TIGR02561 HrpB1_HrpK type III 62.0 49 0.0011 34.7 9.1 89 1079-1183 7-95 (153)
435 cd01814 NTGP5 Ubiquitin-like N 62.0 17 0.00036 36.1 5.5 78 83-165 4-92 (113)
436 COG3629 DnrI DNA-binding trans 61.8 95 0.0021 36.1 12.5 90 1056-1163 137-226 (280)
437 PF04190 DUF410: Protein of un 61.7 3E+02 0.0065 31.7 24.3 159 1010-1196 2-171 (260)
438 COG3014 Uncharacterized protei 60.6 3.5E+02 0.0077 32.2 17.3 29 1002-1030 62-90 (449)
439 KOG3824 Huntingtin interacting 60.5 16 0.00034 42.1 5.7 67 995-1069 113-179 (472)
440 PF11470 TUG-UBL1: GLUT4 regul 60.4 19 0.00041 32.4 5.1 65 88-160 1-65 (65)
441 KOG3364 Membrane protein invol 59.7 37 0.0008 35.0 7.6 69 995-1069 29-100 (149)
442 PRK13184 pknD serine/threonine 59.3 43 0.00094 45.3 10.5 97 1051-1154 486-582 (932)
443 PF10373 EST1_DNA_bind: Est1 D 59.0 58 0.0013 37.3 10.6 62 1059-1136 1-62 (278)
444 KOG4563 Cell cycle-regulated h 58.8 26 0.00056 41.5 7.2 64 1124-1187 41-104 (400)
445 KOG0276 Vesicle coat complex C 58.6 77 0.0017 40.0 11.4 49 1050-1111 647-695 (794)
446 cd00196 UBQ Ubiquitin-like pro 58.1 25 0.00053 29.1 5.6 67 88-162 2-68 (69)
447 cd09240 BRO1_Alix Protein-inte 57.4 3.3E+02 0.0071 32.9 16.7 34 1165-1198 254-287 (346)
448 PF04097 Nic96: Nup93/Nic96; 56.8 5.7E+02 0.012 33.4 22.3 34 1120-1153 410-443 (613)
449 KOG1310 WD40 repeat protein [G 56.5 38 0.00083 41.8 8.3 96 998-1109 374-472 (758)
450 PF05053 Menin: Menin; InterP 56.1 1.4E+02 0.0029 37.8 12.9 72 1081-1155 276-349 (618)
451 PF04053 Coatomer_WDAD: Coatom 55.3 1.2E+02 0.0027 37.7 13.0 52 1127-1194 324-375 (443)
452 cd01789 Alp11_N Ubiquitin-like 55.3 48 0.001 31.2 7.3 76 84-162 2-80 (84)
453 COG3947 Response regulator con 55.0 78 0.0017 36.7 9.9 73 1126-1206 281-353 (361)
454 PF10373 EST1_DNA_bind: Est1 D 54.4 76 0.0016 36.3 10.5 62 1017-1094 1-62 (278)
455 PF07079 DUF1347: Protein of u 53.8 5.3E+02 0.011 32.1 23.1 139 1117-1274 372-520 (549)
456 cd09240 BRO1_Alix Protein-inte 53.5 4.8E+02 0.01 31.5 20.7 110 922-1031 16-161 (346)
457 TIGR03504 FimV_Cterm FimV C-te 51.9 35 0.00076 28.1 5.0 25 1170-1194 3-27 (44)
458 KOG1258 mRNA processing protei 51.5 6.4E+02 0.014 32.3 31.7 140 1124-1290 297-440 (577)
459 KOG0994 Extracellular matrix g 51.4 8.4E+02 0.018 33.7 29.5 24 1132-1155 1533-1556(1758)
460 PF12309 KBP_C: KIF-1 binding 50.9 4.8E+02 0.01 31.9 16.7 101 1054-1154 189-332 (371)
461 cd09239 BRO1_HD-PTP_like Prote 50.6 3E+02 0.0066 33.4 15.0 35 1037-1071 111-154 (361)
462 PF02196 RBD: Raf-like Ras-bin 49.7 38 0.00083 30.9 5.5 62 85-150 2-63 (71)
463 KOG3364 Membrane protein invol 49.7 1.3E+02 0.0028 31.2 9.6 70 1080-1153 30-100 (149)
464 PF05053 Menin: Menin; InterP 48.9 1.6E+02 0.0035 37.1 12.1 71 1125-1198 278-350 (618)
465 PRK14707 hypothetical protein; 47.9 8.8E+02 0.019 36.0 19.5 193 1003-1199 962-1158(2710)
466 COG3914 Spy Predicted O-linked 47.4 3.1E+02 0.0068 34.9 14.2 113 1032-1155 60-173 (620)
467 PRK13184 pknD serine/threonine 46.9 9.5E+02 0.021 33.0 29.6 71 998-1070 512-582 (932)
468 KOG1310 WD40 repeat protein [G 46.5 69 0.0015 39.8 8.3 82 1054-1151 388-472 (758)
469 TIGR02710 CRISPR-associated pr 46.5 4E+02 0.0086 32.6 14.8 59 1045-1106 135-195 (380)
470 KOG2460 Signal recognition par 46.3 4.9E+02 0.011 32.8 15.3 161 1035-1201 275-457 (593)
471 COG4976 Predicted methyltransf 46.3 22 0.00047 39.7 3.9 57 1131-1195 2-58 (287)
472 KOG2086 Protein tyrosine phosp 46.3 30 0.00065 41.3 5.3 58 82-142 304-361 (380)
473 KOG2034 Vacuolar sorting prote 46.2 8.2E+02 0.018 32.9 18.1 57 1045-1112 363-419 (911)
474 cd09034 BRO1_Alix_like Protein 46.1 5.9E+02 0.013 30.4 17.4 151 1038-1199 109-284 (345)
475 TIGR03504 FimV_Cterm FimV C-te 44.7 47 0.001 27.4 4.7 25 1002-1026 3-27 (44)
476 cd02682 MIT_AAA_Arch MIT: doma 44.4 2.3E+02 0.0049 26.4 9.5 36 1165-1200 5-40 (75)
477 PF14858 DUF4486: Domain of un 44.3 7.9E+02 0.017 31.4 17.5 72 1127-1198 154-229 (542)
478 cd09244 BRO1_Rhophilin Protein 43.9 6.6E+02 0.014 30.4 23.2 123 923-1047 15-172 (350)
479 cd01795 USP48_C USP ubiquitin- 43.9 78 0.0017 30.8 6.6 69 95-174 16-89 (107)
480 cd01760 RBD Ubiquitin-like dom 43.3 50 0.0011 30.3 5.2 63 85-149 1-63 (72)
481 PF10858 DUF2659: Protein of u 42.2 3.3E+02 0.0072 29.1 11.3 103 1002-1110 97-199 (220)
482 KOG3024 Uncharacterized conser 42.2 3.1E+02 0.0067 31.9 12.1 134 1011-1150 19-153 (312)
483 cd02681 MIT_calpain7_1 MIT: do 42.2 2.4E+02 0.0052 26.2 9.4 32 1168-1199 8-39 (76)
484 KOG3024 Uncharacterized conser 42.0 3.2E+02 0.0069 31.8 12.1 63 1128-1191 89-152 (312)
485 KOG2908 26S proteasome regulat 41.8 6.9E+02 0.015 30.0 17.9 96 1009-1110 86-182 (380)
486 PF14560 Ubiquitin_2: Ubiquiti 41.6 67 0.0015 30.3 6.0 77 84-163 2-83 (87)
487 cd09248 BRO1_Rhophilin_1 Prote 41.4 7.5E+02 0.016 30.3 23.0 107 923-1031 15-148 (384)
488 cd02683 MIT_1 MIT: domain cont 41.3 1.6E+02 0.0034 27.4 8.2 38 995-1032 3-40 (77)
489 PF09379 FERM_N: FERM N-termin 41.2 67 0.0014 29.5 5.9 76 88-163 1-77 (80)
490 cd06409 PB1_MUG70 The MUG70 pr 41.1 45 0.00097 31.7 4.6 57 84-140 1-59 (86)
491 cd02681 MIT_calpain7_1 MIT: do 40.3 1.7E+02 0.0036 27.2 8.1 34 997-1030 5-38 (76)
492 PF13881 Rad60-SLD_2: Ubiquiti 40.2 1.2E+02 0.0026 30.3 7.7 76 84-164 3-89 (111)
493 smart00455 RBD Raf-like Ras-bi 40.2 66 0.0014 29.3 5.4 61 86-150 2-62 (70)
494 COG4976 Predicted methyltransf 39.4 34 0.00074 38.2 4.0 56 1048-1111 3-58 (287)
495 cd09243 BRO1_Brox_like Protein 39.3 7.6E+02 0.017 29.9 15.8 35 1164-1198 246-280 (353)
496 KOG3824 Huntingtin interacting 39.1 60 0.0013 37.6 6.0 58 1046-1111 122-179 (472)
497 KOG2063 Vacuolar assembly/sort 38.9 3.9E+02 0.0085 36.1 14.1 187 1041-1238 505-708 (877)
498 cd09246 BRO1_Alix_like_1 Prote 38.9 7.5E+02 0.016 29.9 15.9 31 1165-1195 246-276 (353)
499 COG3914 Spy Predicted O-linked 38.6 3.6E+02 0.0078 34.4 12.9 119 1116-1253 60-179 (620)
500 cd09249 BRO1_Rhophilin_2 Prote 38.2 8.4E+02 0.018 29.9 21.9 122 923-1046 15-171 (385)
No 1
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=100.00 E-value=3.5e-155 Score=1446.05 Aligned_cols=1071 Identities=36% Similarity=0.521 Sum_probs=911.3
Q ss_pred cccCCCCCCCCCccccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccccccccccc
Q 000589 68 DTANSADEPKQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISE 147 (1403)
Q Consensus 68 ~~~~~~~~~~~~~~~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~ 147 (1403)
.+.....++..+.....+++|+.|.+..+.++++++++||||||+|++.+.||++|||+|.+.. ..|+.|.++..
T Consensus 17 ~~~~~~~~~~~~~~~~~~~~i~p~~~~~~~~~l~~~~~v~~~~q~l~~~~~t~~~tc~~L~~~~-----~~~d~~~~~~~ 91 (1236)
T KOG1839|consen 17 KTVGDDSEPSAEGDAKSDINIQPSTGGLLSFELSSFSKVQDVRQVLLDRPLTCYITCLSLLLDE-----SKLDYFHIKKK 91 (1236)
T ss_pred cccCCcccccccccccccccccCCCCCceEEEecCcchhhhHHHHHhcccccCceeEEEEEecc-----cccccccceee
Confidence 3334444555566677899999999999999999999999999999999999999999999998 88999999999
Q ss_pred ccccCCCccEEEEEecCCCHHHHHHHHHHHHHhhcCCCccccc----chhhhhhhhhhhcccCCCCcccCCCCCCCCCCC
Q 000589 148 VADITTGGCTLEMVAALYDDRSIRAHVHRTRDLLSLSTLHASL----STSLALQYEMAQSKVSSSGDAAKTEVPELDGLG 223 (1403)
Q Consensus 148 ~~~~~~~~~~l~~v~~~Y~~~~a~~Hv~r~rd~~~~~~~~~s~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 223 (1403)
|.+.+. +|+|.+|.+|||+|+||.||++|||||.......+. .+.+....-..... +++.++.+.+.+...
T Consensus 92 i~~~~~-~~~l~~v~~pY~~re~~~Hv~~vrdlL~~~~~~sa~~~~~~a~~~~~~~~~i~~----~~~~~t~~~p~d~~~ 166 (1236)
T KOG1839|consen 92 ISSGKP-GCVLASVLGPYTPREARLHVHSVRDLLSSSDFASAYSPLMKAFFDHNKLGNIPL----GDRKNTWVDPEDCKP 166 (1236)
T ss_pred ecCCCc-ceEEEEecccCChHHHHHHHHHHHHHHhcCChhhhhcchhhhhhhhccccCCCc----cccccCCCCccccCC
Confidence 999888 999999999999999999999999999764443211 11111111111111 111111222223333
Q ss_pred Cccccc----ccccccCCC--CCccccccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCC
Q 000589 224 FMEDVS----GSLGKLLSS--STQEIKCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGN 297 (1403)
Q Consensus 224 ~~~~~~----~~l~~~~~~--~~~~~~~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~ 297 (1403)
++.+++ ..++++.+. ..+.++|+|+|+||+|||||++|+++||||||+|+|+||++||||||++|||||+|+++
T Consensus 167 ~~~~lp~~~e~~~~~~~~~~~~~~~~~~~~~La~sp~nppp~~~~~~g~l~yL~v~t~e~~~~~it~~~~gfyvNns~~~ 246 (1236)
T KOG1839|consen 167 PFPDLPGEDERWGGDGGEGRSGPKWAKCFRVLAFSPCNPPPERRVLDGDLFYLHVVTLEGSVFHITAIIKGFYVNNSQSS 246 (1236)
T ss_pred CCCCCCccccccCCCCCcCCCCcccchHHHHHhcCCCCCCCcceeecccEEEEEEEEeeccEEEEEEeeeeEEEeccccC
Confidence 333333 333344442 24678999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCCCCCcccHHHHHHHhcHHHHHHHHHHHHhhhcCCCCCcCCCCCCCCCcccCCCCCCCCCChhhhhHhhhhcc
Q 000589 298 VLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFENVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSY 377 (1403)
Q Consensus 298 ~fdp~p~~~~~~~hsL~~Ll~~~S~~F~~~~~~l~~~~~~~~~~~~~~~~~~~~~wl~~~~~~~~~~d~~r~e~~~~~~~ 377 (1403)
+|||+|......+|||++||+++||+|+++|..++++++++|+||+++..+|..+|++++ ..|.+|++|+|++++ ++
T Consensus 247 ~fdP~p~~~~~ls~sl~~ll~~~S~kfkk~~~~~~~~~s~~~~~er~~~~~~~~sw~~~~--~~~~~d~~r~~~A~~-~~ 323 (1236)
T KOG1839|consen 247 KFDPSPSGSGDLSHSLIRLLASLSPKFKKAFQTILKKLSSEELAERVLLKTPDESWIVHP--LPHLADAARAEEALT-GY 323 (1236)
T ss_pred CCCCCCCCCccchhhHHHHHHhhChHHHHHHHHHHHHHhhhhHHHhccccCCCccccccC--CCchHHHHhhHHHhc-cc
Confidence 999999999999999999999999999999999999999999999999999999999987 778999999999997 68
Q ss_pred CCCCCCCCCccHHHhhhhhcCc----hHHH--------------HHHHhhhHHhhcccCCCCCCCCCCCcceeEEcCeeE
Q 000589 378 GSELIGMQRDWNEELQSCREFP----QELL--------------RRAINGAIGVISRCIPPINPTDPECFHMYVHNNIFF 439 (1403)
Q Consensus 378 g~~~~~~~rdWNee~Q~~~elp----~erl--------------~aA~~ga~~vi~~~i~p~np~~~~~~~~~~~nnIff 439 (1403)
+.+.+|+.||||||||++|||| +||+ ++|++|||+||+|||++|||+++...||||||||||
T Consensus 324 ~~~~~G~~rdwNee~Qt~re~~~~~l~dr~~rer~~~Kv~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i~~nIf~ 403 (1236)
T KOG1839|consen 324 YLEHIGYTRDWNEELQTTREMPHKDLPDRGARERNLNKVRGDFVKAATRGALAVISGNIVAINPEEPTILQMFIWNNIFF 403 (1236)
T ss_pred eeccCccccchhhhhhhhhhcCccccchhhhhhhccccchhhhcccccccccccccCccccCCCchHHHHHHHHHhhhhe
Confidence 9999999999999999999999 7772 999999999999999999999999999999999999
Q ss_pred EeecccccccccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhhhhccchhhcchhhHHHHHhhhhhhhh
Q 000589 440 SFAVDSDLNHLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKG 519 (1403)
Q Consensus 440 s~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~d~aa~~aa~~dlkg 519 (1403)
|+++|++ ++|. ..|| |.||++|+++||+|
T Consensus 404 s~~~dv~------~~y~--------------------------~~g~-------------------dvaa~~a~s~dl~g 432 (1236)
T KOG1839|consen 404 SEGFDVR------GHYK--------------------------LGGG-------------------DVAAYAAPSTDLNG 432 (1236)
T ss_pred eeecccc------cccc--------------------------ccch-------------------hHHhhhhccccccc
Confidence 9999999 9998 6788 99999999999999
Q ss_pred hhhhhhcCCCCccccceEEEeecceEEEEEEcC-CccccCCCCCCeeeeccCCCcccccChhhHHHHHHHHhhcCcCCce
Q 000589 520 TKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVL-PGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHT 598 (1403)
Q Consensus 520 ~~~~~~~~~~~l~~l~~~ivdy~G~Rvvaqs~~-Pgi~~~~~~~~v~YGs~d~g~~i~~~~~~~~~~~~~a~~l~lk~H~ 598 (1403)
+++|+.+|++||++|||++||||||||+||+|+ |||+.++++++++||++++||++.+++.|+.++...++.+++++|.
T Consensus 433 ~r~~n~~d~~~l~~Lgt~~vDy~g~rv~Aq~i~~p~~l~~d~~~~~~~g~~~~~K~~~~~e~~~~l~~~~s~~l~i~~h~ 512 (1236)
T KOG1839|consen 433 KRLYNTVDVPGLKTLGTTVVDYRGYRVVAQVIINPGILEGDQSQSVIYGPVDEGKELLSEEAYQRLLERASKLLLISPHP 512 (1236)
T ss_pred cccccccchhhhcchhheeeeccCceEEEEeecCCcchhcccccceeeccccccccccccHHHHHhhcccccccccCCcc
Confidence 999999999999999999999999999999999 9999999999999999999999999999999999999999999999
Q ss_pred ecCCC-CCeeeeecccccccccccCchhHHHhhhhcCCCCCCCCC----------CCCccccccHHHHHHHHHHHHHHHh
Q 000589 599 VLDGS-GNVFKLAAPVECKGIVGSDDRHYLLDLMRVTPRDANYTG----------LGSRFCIMRPELITAFCQVEAAEKS 667 (1403)
Q Consensus 599 v~~~~-~~~~~l~~s~e~kgi~G~DgR~YilDl~R~~P~d~~~~~----------~~h~~~~LRpElv~~~~~~~~~~~~ 667 (1403)
|++.. +...+|+.|+|||||+|.|||+||+||+|+||+|++|.+ .||++|+||||||.+||+++.....
T Consensus 513 ~i~~~d~~~~eL~~s~eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i 592 (1236)
T KOG1839|consen 513 VINAKDTVLPELGISFESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFI 592 (1236)
T ss_pred ccchhhccccccccccccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHH
Confidence 99874 478899999999999999999999999999999999987 2899999999999999999664322
Q ss_pred hC-CCCCC-CccCCCCCCCccc-ccccccccccccccccccccccccccchhhhhhhhhccccCCCCCCccccCCCcccc
Q 000589 668 KG-QSKPE-GEAIVNPDSSEAS-GIKESANHEVNVTATSDVSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTE 744 (1403)
Q Consensus 668 ~~-~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npd~fs~ 744 (1403)
.. .+..+ .+.+......+.. ..........+ ..+...+......-...++..+++..++...++++.||||+|..
T Consensus 593 ~~~e~~~~~~~~ds~~~~~~~d~~~~~~v~~l~~--~is~d~~eS~~~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s 670 (1236)
T KOG1839|consen 593 VAVENAAEDYGFDSSNPFKKSDAIGLVPVHKLVN--CISADGRESSKLSLDDAVKYATKALVKLVAVCGPYGFNPAGFYS 670 (1236)
T ss_pred HHHhcchhhccCCccccccccchhhHHHHHHHHH--hhccccccccccchHHHHHHHHHHHHHHHhhhcccccCcccccc
Confidence 11 11111 0000000000000 00000000000 00000000000001123344566777888899999999999998
Q ss_pred --cccCCCh--hhHHHhHHHHHHHHHHHhhhhhHHHHHHhhhcCCccCCcchhHHHHHhcCCccchhHHHHhhhC-----
Q 000589 745 --FKLAGSQ--DEIAADEENVRKVSLYLADVVLPKFIQDLCTLEVSPMDGQTLTEALHAHGINIRYIGKVADGTK----- 815 (1403)
Q Consensus 745 --~~~~~~~--~~~~~d~~~v~~as~~L~~~~IP~~v~d~~~~~~~p~Dg~~Lt~~lH~~GINmRYLG~v~~~~~----- 815 (1403)
+....++ .+...+++.|.++++|+....||.||+++.++.+.|+||++|+++||.+||||||||+++..+.
T Consensus 671 ~~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a 750 (1236)
T KOG1839|consen 671 LAVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVFPYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAA 750 (1236)
T ss_pred CceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhccccceeeecccHHHHHHHHhhHHHHHhhccccccCccccc
Confidence 3333333 3567789999999999999999999999999999999999999999999999999999999873
Q ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHhhcCCCCCCCCcccccchhhhhhccccCCCCCCCc
Q 000589 816 --HLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSK 893 (1403)
Q Consensus 816 --~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~~ishfLN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k 893 (1403)
.+.++.++++-|+++|++||||+.++|.++...++.++||||||+||...++.++.++.....+.. + ....+
T Consensus 751 ~~~~v~l~~l~~~ei~~RslKhvlK~~~r~l~~~~i~ta~SH~ln~~ls~~~~av~~~~t~~~~~ka~--~----~~~~~ 824 (1236)
T KOG1839|consen 751 TYINVALMELGVGEIALRSLKHVLKDNLRLLGADHIQTAASHALNCLLSVMEAAVQKEQTTLEILKAK--D----LRTQD 824 (1236)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHhhcccccCCCccchHHHHhhh--h----hhhhh
Confidence 267899999999999999999999999999999999999999999999888776665543321110 0 00001
Q ss_pred cccccccchhhhhhccccccccccChHHHHHHHHHHHHHHccccCCccHHH------hHHHHHHHHHHHHHHHHHHHHHh
Q 000589 894 SSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELPEDARL------WVKKVSVMRNLCQKVGISVTARK 967 (1403)
Q Consensus 894 ~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~~rf~y~l~~~~~~------~~~~~~lLr~i~~k~Giql~~~~ 967 (1403)
..+ +.. ..+-+-.+|.-|+.+.||..|....+.+|.+........ ...++...+..|.+.|++...+.
T Consensus 825 ~~~----g~~--k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~r~ 898 (1236)
T KOG1839|consen 825 AAA----GTP--KPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLKNGKSKIAVEKLEKKKRELQKPARN 898 (1236)
T ss_pred hcc----CCC--CcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhhcccchhHHHHHHHHhhhcchhhhh
Confidence 111 000 011134689999999999999999999999988766654 34578899999999999999999
Q ss_pred hhcccC---CCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHH
Q 000589 968 YDFNAA---TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCR 1044 (1403)
Q Consensus 968 Y~f~~~---~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~ 1044 (1403)
|.+... ..|...||.++.|++|++.|...++...++.|.....+|.+.+|.+ +.+++.++.++++..|++++.+|.
T Consensus 899 ~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~-~~~slnl~~~v~~~~h~~~~~~~~ 977 (1236)
T KOG1839|consen 899 YDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE-LPESLNLLNNVMGVLHPEVASKYR 977 (1236)
T ss_pred ccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-hhhhhhHHHHhhhhcchhHHHHHH
Confidence 999884 7899999999999999999999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA 1124 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a 1124 (1403)
.|+.++..+|++++|+.+.++|+.+.++.+|.|++.+...|.+|+.+++..+....|+..+.++++++...+|++||..+
T Consensus 978 ~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a 1057 (1236)
T KOG1839|consen 978 SLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTA 1057 (1236)
T ss_pred HHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.+..+++.++...++++.|+++++.|+.+...++|+.+..++.++..+++++..++++..|+.+.+.++.++...+|++|
T Consensus 1058 ~~~~nle~l~~~v~e~d~al~~le~A~a~~~~v~g~~~l~~~~~~~~~a~l~~s~~dfr~al~~ek~t~~iy~~qlg~~h 1137 (1236)
T KOG1839|consen 1058 LSFINLELLLLGVEEADTALRYLESALAKNKKVLGPKELETALSYHALARLFESMKDFRNALEHEKVTYGIYKEQLGPDH 1137 (1236)
T ss_pred hhhhHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcCccchhhhhHHHHHHHHHhhhHHHHHHHHHHhhHHHHHHHhhCCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHH
Q 000589 1205 SRTKDSQNWMKTF 1217 (1403)
Q Consensus 1205 ~~t~~a~~~La~l 1217 (1403)
..+.++..|+...
T Consensus 1138 srt~~S~~~~~~~ 1150 (1236)
T KOG1839|consen 1138 SRTKESSEWLNLS 1150 (1236)
T ss_pred ccchhhHHHHHHh
Confidence 9999999988743
No 2
>PF13236 CLU: Clustered mitochondria
Probab=100.00 E-value=1.4e-60 Score=522.59 Aligned_cols=203 Identities=48% Similarity=0.767 Sum_probs=196.7
Q ss_pred ccHHHhhhhhcCc----hHHH--------------HHHHhhhHHhhcccCCCCCCCCCCCcceeEEcCeeEEeecccccc
Q 000589 387 DWNEELQSCREFP----QELL--------------RRAINGAIGVISRCIPPINPTDPECFHMYVHNNIFFSFAVDSDLN 448 (1403)
Q Consensus 387 dWNee~Q~~~elp----~erl--------------~aA~~ga~~vi~~~i~p~np~~~~~~~~~~~nnIffs~~~d~~~~ 448 (1403)
|||||||+++||| +||+ +||++||++||+|+++|+||.++..+|||+||||||||+.|..
T Consensus 1 DWNeefQ~~~elp~~t~~er~~r~r~l~~l~~dFv~aA~~~a~~Ii~~~~~p~n~~~~~~~~~y~~nnIff~~~~d~~-- 78 (221)
T PF13236_consen 1 DWNEEFQSLRELPRETLEERIERDRKLSKLHSDFVEAATRGAMAIIDENILPINPKEIKPGQKYLYNNIFFSFADDSR-- 78 (221)
T ss_pred ChHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCccCCCCCCCCCCcCEEEECCEEEEEecCcc--
Confidence 8999999999999 6652 9999999999999999999999999999999999999999988
Q ss_pred cccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhhhhccchhhcchhhHHHHHhhhhhhhhhhhhhhcCC
Q 000589 449 HLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVELAQVSSESQLAESEQATYASANNDLKGTKAYQEADV 528 (1403)
Q Consensus 449 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~d~aa~~aa~~dlkg~~~~~~~~~ 528 (1403)
|+|. ..|| |+||++||+|||+|+++|+++++
T Consensus 79 ----~~~~--------------------------~~gg-------------------deaA~~aa~~dLkg~~~~~~~~~ 109 (221)
T PF13236_consen 79 ----GIYE--------------------------NLGG-------------------DEAARKAAGHDLKGVNALNQADI 109 (221)
T ss_pred ----cccc--------------------------cccc-------------------cHHHHHHhhccHHHHHHHHhCCC
Confidence 9998 7899 99999999999999999999999
Q ss_pred CCccccceEEEeecceEEEEEEcCCccccCCCCCCeeeeccCCCcccccChhhHHHHHHHHhhcCcCCceecCCCCCeee
Q 000589 529 PGLHNLAMAIIDYRGHRVVAQSVLPGILQGDKSDSLLYGSVDNGKKISWNEDFHSKVLEAAKRLHLKEHTVLDGSGNVFK 608 (1403)
Q Consensus 529 ~~l~~l~~~ivdy~G~Rvvaqs~~Pgi~~~~~~~~v~YGs~d~g~~i~~~~~~~~~~~~~a~~l~lk~H~v~~~~~~~~~ 608 (1403)
+|||+|+|||||||||||+|||+||||++++++++|+|||+|+|++|++|++|+++|+++|+.||||+|.|.+.++ .++
T Consensus 110 ~~l~~~lt~iVDY~G~Rv~AqsilPg~~~~~~~~~vvYGs~d~g~~i~~~~~~~~~l~~~a~~l~Lk~H~v~~~~~-~~~ 188 (221)
T PF13236_consen 110 PGLHTPLTAIVDYRGYRVLAQSILPGILNREQESTVVYGSSDGGKTIHSDEEFHELLKKIAKALNLKPHKVGDSEG-SVE 188 (221)
T ss_pred CCCcccCEEEEEeCCEEEEEEecCCcCCCCCCCceEEECCcCCCCeecCCHHHHHHHHHHHHHhCcCcceecCCCC-cEE
Confidence 9999999999999999999999999999998889999999999999999999999999999999999999998877 899
Q ss_pred eecccccccccccCchhHHHhhhhcCCCCCCCC
Q 000589 609 LAAPVECKGIVGSDDRHYLLDLMRVTPRDANYT 641 (1403)
Q Consensus 609 l~~s~e~kgi~G~DgR~YilDl~R~~P~d~~~~ 641 (1403)
||+|+|+|||+|+|||+|||||+|+||||+||.
T Consensus 189 l~~s~d~kg~~G~D~R~YilDl~R~~P~d~~f~ 221 (221)
T PF13236_consen 189 LYGSADIKGIIGSDGRYYILDLARTFPPDVNFL 221 (221)
T ss_pred EEeeeeeEEEEcCCCCEEEEeccccCCCCcCcC
Confidence 999999999999999999999999999999984
No 3
>PF12807 eIF3_p135: Translation initiation factor eIF3 subunit 135
Probab=100.00 E-value=4.1e-37 Score=326.59 Aligned_cols=165 Identities=42% Similarity=0.787 Sum_probs=147.0
Q ss_pred hhcCCccCCcchhHHHHHhcCCccchhHHHHhhh-CCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHHHHHHHHHh
Q 000589 781 CTLEVSPMDGQTLTEALHAHGINIRYIGKVADGT-KHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGPAIAHLFNC 859 (1403)
Q Consensus 781 ~~~~~~p~Dg~~Lt~~lH~~GINmRYLG~v~~~~-~~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~~ishfLN~ 859 (1403)
+++++.|+||.+|++.||++||||||||+|++.+ +.+++|+.||++|||||++|||||.+||.++...++.+|+|||||
T Consensus 1 ~~~~~~p~Dg~~L~~~lH~~GIN~RyLG~v~~~~~~~~~~l~~l~~~EmiaR~~K~i~r~~l~~~~~~~~~~~v~~~lN~ 80 (169)
T PF12807_consen 1 CSLSVSPIDGQSLTEILHRRGINMRYLGKVAKLIKSSLPHLRRLCLQEMIARAAKHILREYLRSVPQSELSSAVSHFLNC 80 (169)
T ss_pred CCccccCcccHHHHHHHHHcCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHH
Confidence 4678899999999999999999999999999997 458999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCCCcccccchhhhhhccccCCCCCCCccccccccchhhhhhccccccccccChHHHHHHHHHHHHHHccccCC
Q 000589 860 FFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAKLKYQFELP 939 (1403)
Q Consensus 860 llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~~rf~y~l~ 939 (1403)
|||+..++.|+....+. .+...+.++.+|.++|+..+|+.|.+++..+|+|+++
T Consensus 81 llg~~~~~~~~~~~~~~--------------------------~~~~~~~~~~~~~~lt~~~l~~~I~~ev~~rf~y~l~ 134 (169)
T PF12807_consen 81 LLGSSSNSKPKKEKKEK--------------------------NSNSKSKSDSSWSKLTPSSLWSEIEKEVKSRFRYELP 134 (169)
T ss_pred hhCCCccccccccccch--------------------------hccccccccchhhhcCcHHHHHHHHHHHHHhcCCcCc
Confidence 99998887443221110 0112445678999999999999999999999999999
Q ss_pred ccHHH---hHHHHHHHHHHHHHHHHHHHHHhhhcc
Q 000589 940 EDARL---WVKKVSVMRNLCQKVGISVTARKYDFN 971 (1403)
Q Consensus 940 ~~~~~---~~~~~~lLr~i~~k~Giql~~~~Y~f~ 971 (1403)
.+|.. .++++++||++|+++|||+..++|.|+
T Consensus 135 ~~~~~~~~~~~~~~LLR~ic~k~GiQl~~r~Y~f~ 169 (169)
T PF12807_consen 135 EDWFDEKYGLQKIQLLREICQKTGIQLLARDYDFT 169 (169)
T ss_pred hHHhhhhccccHHHHHHHHHHHhCeEeeeecCCCC
Confidence 99999 899999999999999999999999884
No 4
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.94 E-value=4.3e-24 Score=258.07 Aligned_cols=286 Identities=28% Similarity=0.358 Sum_probs=269.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....+..+|..|..+|+|+.|+.++.+|+++.....|..|+.++..+..+|.+|..+++|.+|+.+|++|+.+.+.++|.
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 35555569999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+||.++.++.|||.+|...|++++|..++++|++|.+..+|..++.+...+.+++.++..++++++|+.+|++++++...
T Consensus 278 ~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~ 357 (508)
T KOG1840|consen 278 DHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLD 357 (508)
T ss_pred CCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.+|++++.++..+.+||.+|..+|+|++|.+++++|+.+.++..|..+..+...+..|+..| ...+++.+|...
T Consensus 358 ~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~------~~~k~~~~a~~l 431 (508)
T KOG1840|consen 358 APGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAY------EELKKYEEAEQL 431 (508)
T ss_pred hccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHH------HHhcccchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999988 888999999999
Q ss_pred HHHHHHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHHHHHHH--HhhcCCCCccccc
Q 000589 1237 ASTQKAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASANNSLN--AALLGETLPRGRG 1290 (1403)
Q Consensus 1237 l~~qkALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~ 1290 (1403)
+. ++..|.+ .||++...+.+|+ .+|+++.|.++.+++++ ....|..++....
T Consensus 432 ~~--~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
T KOG1840|consen 432 FE--EAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVED 493 (508)
T ss_pred HH--HHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhH
Confidence 98 8877775 6999999999999 89999999999999998 5555666665444
No 5
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.92 E-value=1.3e-22 Score=245.29 Aligned_cols=298 Identities=23% Similarity=0.222 Sum_probs=275.3
Q ss_pred HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC
Q 000589 1016 EAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL 1095 (1403)
Q Consensus 1016 eA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~ 1095 (1403)
.....+...+.+..+..+..+|....+..+||..|..+|+|+.|+..+++|+++.++..|.+|+.......++|.+|..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~ 254 (508)
T KOG1840|consen 175 SSIEGTLKGLDIQAKGLGDEDPERLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSL 254 (508)
T ss_pred ccchhhHHHHHHHHHhcccCCchHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHh
Confidence 56666666677777777888999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Q 000589 1096 NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIA 1175 (1403)
Q Consensus 1096 G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~ 1175 (1403)
++|.+|+.+|++|+.+.+..+|.+||.++.++.|||..|...|+|++|..++++|++|.++..|..++..+..+.+++.+
T Consensus 255 ~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~ 334 (508)
T KOG1840|consen 255 GKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAI 334 (508)
T ss_pred ccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----hCh
Q 000589 1176 FNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-----AHP 1250 (1403)
Q Consensus 1176 y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-----~~p 1250 (1403)
+..++++++|+.++++++.|+...+|++|+.+...+.+||.+| ..+|++.+|.+++. +|+.+.+ .++
T Consensus 335 ~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~------~~~gk~~ea~~~~k--~ai~~~~~~~~~~~~ 406 (508)
T KOG1840|consen 335 LQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELY------LKMGKYKEAEELYK--KAIQILRELLGKKDY 406 (508)
T ss_pred HHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH------HHhcchhHHHHHHH--HHHHHHHhcccCcCh
Confidence 9999999999999999999999999999999999999999999 99999999999999 9999885 477
Q ss_pred HHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHH
Q 000589 1251 DLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPP 1325 (1403)
Q Consensus 1251 ~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~ 1325 (1403)
.....+.+|| +.+++.+|..+|.++.. ...+|+.||.+...+ ...+-+|..+|+++.|+++
T Consensus 407 ~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~--------------~nL~~~Y~~~g~~e~a~~~ 472 (508)
T KOG1840|consen 407 GVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTY--------------LNLAALYRAQGNYEAAEEL 472 (508)
T ss_pred hhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHH--------------HHHHHHHHHcccHHHHHHH
Confidence 8888889998 78899999999999999 777899999988844 3333478999999999999
Q ss_pred HHHHHHHHhc
Q 000589 1326 LTQLLNIINS 1335 (1403)
Q Consensus 1326 l~qaL~i~~s 1335 (1403)
...+++.-..
T Consensus 473 ~~~~~~~~~~ 482 (508)
T KOG1840|consen 473 EEKVLNAREQ 482 (508)
T ss_pred HHHHHHHHHH
Confidence 9998866553
No 6
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.91 E-value=3.3e-24 Score=248.94 Aligned_cols=237 Identities=19% Similarity=0.203 Sum_probs=154.8
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.+......|.+|.++|-++..+|+...|+..|.+|+.+ +|..+.+|.+||.+|..++.|++|+..|.+|+.+
T Consensus 210 Ai~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--------dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l 281 (966)
T KOG4626|consen 210 AIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--------DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL 281 (966)
T ss_pred HHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--------CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc
Confidence 33333444556666666666677777777777776666 5666666777777777777777777777776665
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.|..+.++.|||.+|+.+|..+.|+..|++|+++ .|....+|+|||..+-..|+..+|..+|.+
T Consensus 282 --------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 282 --------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred --------CCcchhhccceEEEEeccccHHHHHHHHHHHHhc--------CCCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 3556666667777777777777777777776654 355556667777777777777777777777
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ 1229 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~ 1229 (1403)
||.++ +..+.++++||.+|..+|.+++|..+|++|+++ .|..+.+.++|+.+| .++|+
T Consensus 346 aL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--------~p~~aaa~nNLa~i~------kqqgn 403 (966)
T KOG4626|consen 346 ALRLC--------PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--------FPEFAAAHNNLASIY------KQQGN 403 (966)
T ss_pred HHHhC--------CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--------ChhhhhhhhhHHHHH------Hhccc
Confidence 76665 344556666777777777777777777766665 345566666676666 66677
Q ss_pred HHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1230 KGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1230 ~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+++|+.+|. +.++-.|..+.++.++| .+|+...|+.+|.+|+.
T Consensus 404 l~~Ai~~Yk-----ealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~ 450 (966)
T KOG4626|consen 404 LDDAIMCYK-----EALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQ 450 (966)
T ss_pred HHHHHHHHH-----HHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHh
Confidence 777776666 33344466666666666 56666677777776665
No 7
>PF15044 CLU_N: Mitochondrial function, CLU-N-term
Probab=99.90 E-value=4.7e-24 Score=193.98 Aligned_cols=76 Identities=43% Similarity=0.851 Sum_probs=74.2
Q ss_pred cCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecCCCHHHHHHHHHHHHH
Q 000589 100 LNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAALYDDRSIRAHVHRTRD 179 (1403)
Q Consensus 100 ~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~Y~~~~a~~Hv~r~rd 179 (1403)
|+++|+|+||||+|++.|+||+||||+|.++| ++||+|.||++++|+++ +|+|+||++|||+|+||.||+||||
T Consensus 1 v~~~d~v~dvrq~L~~~~~t~~~Tn~~L~~~g-----~~L~~~~el~~i~~~~~-~~~L~lve~pYt~r~a~~Hv~r~rd 74 (76)
T PF15044_consen 1 VSPTDTVQDVRQVLAESPETCYLTNFSLEHNG-----QRLDDFVELSEIEGIKD-GCVLELVEEPYTEREAREHVRRVRD 74 (76)
T ss_pred CChhhHHHHHHHHHHhCccccceeEEEEEECC-----CccCCchhhhhhhCCCC-CcEEEEEecCCCHHHHHHHHHHHHh
Confidence 68999999999999999999999999999999 88999999999999999 9999999999999999999999999
Q ss_pred hh
Q 000589 180 LL 181 (1403)
Q Consensus 180 ~~ 181 (1403)
+|
T Consensus 75 li 76 (76)
T PF15044_consen 75 LI 76 (76)
T ss_pred hC
Confidence 86
No 8
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.88 E-value=6.2e-22 Score=230.27 Aligned_cols=239 Identities=19% Similarity=0.218 Sum_probs=218.6
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
.+.+.-++....+|+++|.+|...+.|++|+.+|.+|+.+ .|..+.++.+||.+|+.+|..+-|+..|++|+
T Consensus 242 ~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--------rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral 313 (966)
T KOG4626|consen 242 EEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--------RPNHAVAHGNLACIYYEQGLLDLAIDTYKRAL 313 (966)
T ss_pred HHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--------CCcchhhccceEEEEeccccHHHHHHHHHHHH
Confidence 3444445556788999999999999999999999999998 67889999999999999999999999999999
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000589 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYL 1147 (1403)
Q Consensus 1068 ~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~l 1147 (1403)
.+ .|....+|+|||..+-..|+..+|..+|.+|+.+. |..+.+++|||.+|.++|.+++|..+|
T Consensus 314 ~~--------~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~--------p~hadam~NLgni~~E~~~~e~A~~ly 377 (966)
T KOG4626|consen 314 EL--------QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLC--------PNHADAMNNLGNIYREQGKIEEATRLY 377 (966)
T ss_pred hc--------CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhC--------CccHHHHHHHHHHHHHhccchHHHHHH
Confidence 97 57888999999999999999999999999999874 555677999999999999999999999
Q ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHh
Q 000589 1148 QEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQ 1227 (1403)
Q Consensus 1148 ekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~q 1227 (1403)
++|++.. |..+.++.+||.+|.++|++++|+.+|++|+.| .|..++++.++|..| ..+
T Consensus 378 ~~al~v~--------p~~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--------~P~fAda~~NmGnt~------ke~ 435 (966)
T KOG4626|consen 378 LKALEVF--------PEFAAAHNNLASIYKQQGNLDDAIMCYKEALRI--------KPTFADALSNMGNTY------KEM 435 (966)
T ss_pred HHHHhhC--------hhhhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--------CchHHHHHHhcchHH------HHh
Confidence 9999976 778899999999999999999999999999998 689999999999998 899
Q ss_pred hcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1228 KQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1228 g~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
|+...|++++. ....-+|..+.++.+|| ..|+..+|+..|+.||+
T Consensus 436 g~v~~A~q~y~-----rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk 484 (966)
T KOG4626|consen 436 GDVSAAIQCYT-----RAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK 484 (966)
T ss_pred hhHHHHHHHHH-----HHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc
Confidence 99999999999 44556799999999999 78999999999999998
No 9
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=99.85 E-value=1.3e-19 Score=229.86 Aligned_cols=776 Identities=22% Similarity=0.264 Sum_probs=455.0
Q ss_pred cCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCCCCcccHHHHHHHhcHHHHHHHHHHHHhhhcCCCCC
Q 000589 263 LVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKANSEATTLIGLLQKISSKFKKAFREILDRKASAHPFE 342 (1403)
Q Consensus 263 ~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~~~~hsL~~Ll~~~S~~F~~~~~~l~~~~~~~~~~~ 342 (1403)
-.+|.+-+-+..+.|+..|+-+.+.|||- +++...++|+++||| .|..|..+|+.+++.+.+++|+.
T Consensus 81 ~~~d~~~~~~~i~~~~~~~~l~~v~~pY~-----------~re~~~Hv~~vrdlL--~~~~~~sa~~~~~~a~~~~~~~~ 147 (1236)
T KOG1839|consen 81 SKLDYFHIKKKISSGKPGCVLASVLGPYT-----------PREARLHVHSVRDLL--SSSDFASAYSPLMKAFFDHNKLG 147 (1236)
T ss_pred cccccccceeeecCCCcceEEEEecccCC-----------hHHHHHHHHHHHHHH--hcCChhhhhcchhhhhhhhcccc
Confidence 56889999999999999999999999998 788888999999999 88899999999999999999999
Q ss_pred cCCCCCCCCCcccCCCCCCCCCChhhhhHhhhhccCCCCCCCC--CccHHHhhhhhcCchHHHHHHHhhhHHhhcccCCC
Q 000589 343 NVQSLLPPNSWLGLYPVPDHKRDAARAEDALTLSYGSELIGMQ--RDWNEELQSCREFPQELLRRAINGAIGVISRCIPP 420 (1403)
Q Consensus 343 ~~~~~~~~~~wl~~~~~~~~~~d~~r~e~~~~~~~g~~~~~~~--rdWNee~Q~~~elp~erl~aA~~ga~~vi~~~i~p 420 (1403)
++++....++|.+|.. .......++.+++. ||.++..+. --|+.+|-.+.-+ |
T Consensus 148 ~i~~~~~~~t~~~p~d-~~~~~~~lp~~~e~---~~~~~~~~~~~~~~~~~~~~La~s---------------------p 202 (1236)
T KOG1839|consen 148 NIPLGDRKNTWVDPED-CKPPFPDLPGEDER---WGGDGGEGRSGPKWAKCFRVLAFS---------------------P 202 (1236)
T ss_pred CCCccccccCCCCccc-cCCCCCCCCccccc---cCCCCCcCCCCcccchHHHHHhcC---------------------C
Confidence 9999999999999863 44455667778876 445544222 2477777777644 3
Q ss_pred CCCCCCC---Ccc-eeEEcCeeEEeecccc---cccccccccccccccccCCCCCcCcccCCCCccccCCCCCCcchhhh
Q 000589 421 INPTDPE---CFH-MYVHNNIFFSFAVDSD---LNHLSRKRASDIISINSSGKASHNFTSADGGISYGENAGESNGVVEL 493 (1403)
Q Consensus 421 ~np~~~~---~~~-~~~~nnIffs~~~d~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gg~~~~~~~ 493 (1403)
-||-.+. +++ ||++ +..+|+. |.-.++|-|.|- + .+..-|..- .+. |+-+=. +-+
T Consensus 203 ~nppp~~~~~~g~l~yL~-----v~t~e~~~~~it~~~~gfyvNn--s--~~~~fdP~p-~~~----~~ls~s---l~~- 264 (1236)
T KOG1839|consen 203 CNPPPERRVLDGDLFYLH-----VVTLEGSVFHITAIIKGFYVNN--S--QSSKFDPSP-SGS----GDLSHS---LIR- 264 (1236)
T ss_pred CCCCCcceeecccEEEEE-----EEEeeccEEEEEEeeeeEEEec--c--ccCCCCCCC-CCC----ccchhh---HHH-
Confidence 4443332 222 2322 2222221 111233555521 0 000000000 000 000000 000
Q ss_pred hhccchhhcchhhHHHHHhhhhhhhhhhhhhhcCCCCccccceEEEeecceEEEEEEcCCccccCC----CCCCeeeecc
Q 000589 494 AQVSSESQLAESEQATYASANNDLKGTKAYQEADVPGLHNLAMAIIDYRGHRVVAQSVLPGILQGD----KSDSLLYGSV 569 (1403)
Q Consensus 494 ~~~~~~~~~~~~d~aa~~aa~~dlkg~~~~~~~~~~~l~~l~~~ivdy~G~Rvvaqs~~Pgi~~~~----~~~~v~YGs~ 569 (1403)
. -.++.+.=..++..--+++..--+.+++-.+ |--+-|++-.+.| ..| ++--.-|+.-
T Consensus 265 l----l~~~S~kfkk~~~~~~~~~s~~~~~er~~~~-----------~~~~sw~~~~~~~---~~d~~r~~~A~~~~~~~ 326 (1236)
T KOG1839|consen 265 L----LASLSPKFKKAFQTILKKLSSEELAERVLLK-----------TPDESWIVHPLPH---LADAARAEEALTGYYLE 326 (1236)
T ss_pred H----HHhhChHHHHHHHHHHHHHhhhhHHHhcccc-----------CCCccccccCCCc---hHHHHhhHHHhccceec
Confidence 0 0111111222333333333333334433322 5666777776666 111 1112257777
Q ss_pred CCCcccccChhhHHH--------HHHHHhhcCcCCceecCCCCCeeeeecccccccccc---------cCchhHHHh---
Q 000589 570 DNGKKISWNEDFHSK--------VLEAAKRLHLKEHTVLDGSGNVFKLAAPVECKGIVG---------SDDRHYLLD--- 629 (1403)
Q Consensus 570 d~g~~i~~~~~~~~~--------~~~~a~~l~lk~H~v~~~~~~~~~l~~s~e~kgi~G---------~DgR~YilD--- 629 (1403)
+-|-+-.||+++... -+.++...++..= +.-+.-....|-++ +++--+++-
T Consensus 327 ~~G~~rdwNee~Qt~re~~~~~l~dr~~rer~~~Kv---------~~df~~~a~~Ga~~vi~~ni~ainp~e~~~~qm~i 397 (1236)
T KOG1839|consen 327 HIGYTRDWNEELQTTREMPHKDLPDRGARERNLNKV---------RGDFVKAATRGALAVISGNIVAINPEEPTILQMFI 397 (1236)
T ss_pred cCccccchhhhhhhhhhcCccccchhhhhhhccccc---------hhhhcccccccccccccCccccCCCchHHHHHHHH
Confidence 778888888776432 2345555555420 00111111222111 122222111
Q ss_pred -----hhhcCCCCCCCCCCCCccccccHHHHHHHHHHHHHHHhhCCCCCCCccCCCCCCCcccccccccccccccccccc
Q 000589 630 -----LMRVTPRDANYTGLGSRFCIMRPELITAFCQVEAAEKSKGQSKPEGEAIVNPDSSEASGIKESANHEVNVTATSD 704 (1403)
Q Consensus 630 -----l~R~~P~d~~~~~~~h~~~~LRpElv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 704 (1403)
+.+-|+.. .|. |+..+|..+.++....-+-+. .....+.......++...... +-..
T Consensus 398 ~~nIf~s~~~dv~------~~y------~~~g~dvaa~~a~s~dl~g~r---~~n~~d~~~l~~Lgt~~vDy~---g~rv 459 (1236)
T KOG1839|consen 398 WNNIFFSEGFDVR------GHY------KLGGGDVAAYAAPSTDLNGKR---LYNTVDVPGLKTLGTTVVDYR---GYRV 459 (1236)
T ss_pred Hhhhheeeecccc------ccc------cccchhHHhhhhccccccccc---cccccchhhhcchhheeeecc---CceE
Confidence 01111111 121 777788887652111000000 000001111111111110000 0000
Q ss_pred cccccccccchhhhhhhhhccccCCCCCCccccCCCcccccccCCChhhHHHhHHHHHHHHHHHh----------hhhhH
Q 000589 705 VSQDATKEGKVETVQECRSASEESSDSCDGILFNPNAFTEFKLAGSQDEIAADEENVRKVSLYLA----------DVVLP 774 (1403)
Q Consensus 705 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Npd~fs~~~~~~~~~~~~~d~~~v~~as~~L~----------~~~IP 774 (1403)
..|...........+++. ...........+.. -.+|. .++..++.++. +.+.|
T Consensus 460 ~Aq~i~~p~~l~~d~~~~-~~~g~~~~~K~~~~-~e~~~---------------~l~~~~s~~l~i~~h~~i~~~d~~~~ 522 (1236)
T KOG1839|consen 460 VAQVIINPGILEGDQSQS-VIYGPVDEGKELLS-EEAYQ---------------RLLERASKLLLISPHPVINAKDTVLP 522 (1236)
T ss_pred EEEeecCCcchhcccccc-eeeccccccccccc-cHHHH---------------HhhcccccccccCCccccchhhcccc
Confidence 000000000000000000 00000000001111 11222 23333333332 11556
Q ss_pred HHHHHhhhcCCccCCcc-hhHHHHHhcCCccchhH--HHHhhhCCChHHHHHHHHHHHHHHHHHHHHHHhhhcCCCChHH
Q 000589 775 KFIQDLCTLEVSPMDGQ-TLTEALHAHGINIRYIG--KVADGTKHLPHLWDLCSNEIVVRSAKHILKDVLRETEDHDLGP 851 (1403)
Q Consensus 775 ~~v~d~~~~~~~p~Dg~-~Lt~~lH~~GINmRYLG--~v~~~~~~l~~l~~l~~~EmiaRs~Khilr~~lr~~~~~~~~~ 851 (1403)
++...+.+..+.|.||+ .|+++||.++..||||| ++.++..+.||...+|..|||.|.++|.+..++..+.
T Consensus 523 eL~~s~eskgi~g~DgR~yllDL~~t~Pld~~~L~~~~~~~~~~k~pHkl~~lr~Eli~~f~~~~l~~~i~~~e------ 596 (1236)
T KOG1839|consen 523 ELGISFESKGISGVDGRHYLLDLMHTRPLDLNFLGVEAVEELAEKYPHKLSLLRPELILKFYEHRLLAFIVAVE------ 596 (1236)
T ss_pred ccccccccccccCCCcchhHHHHHhccCCcccccchhhhhhccccCchhhhhcCHHHHHHHHHHHHHHHHHHHh------
Confidence 66666777888999998 99999999999999999 9999998999999999999999999999888775432
Q ss_pred HHHHHHHhhcCCCCCCCCcccccchhhhhhccccCCCCCCCccccccccchhhhhhccccccccccChHHHHHHHHHHHH
Q 000589 852 AIAHLFNCFFGSCQAVRGKVTASNVQSRNQMKEHAGHPSSSKSSRSQARWKDRVAARKHHSSYMNVNSDTLWSDLKEFAK 931 (1403)
Q Consensus 852 ~ishfLN~llg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~k~~~~~~~~~~~~~~~~~~~~lt~~~lw~~I~~~~~ 931 (1403)
||.=
T Consensus 597 ------~~~~---------------------------------------------------------------------- 600 (1236)
T KOG1839|consen 597 ------NAAE---------------------------------------------------------------------- 600 (1236)
T ss_pred ------cchh----------------------------------------------------------------------
Confidence 1110
Q ss_pred HHccccCCccHHHhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHc
Q 000589 932 LKYQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAE 1011 (1403)
Q Consensus 932 ~rf~y~l~~~~~~~~~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~ 1011 (1403)
+|.++...+|...|+..+.++.+....-..+.+ -...
T Consensus 601 -----------------------------------~~~~ds~~~~~~~d~~~~~~v~~l~~~is~d~~--------eS~~ 637 (1236)
T KOG1839|consen 601 -----------------------------------DYGFDSSNPFKKSDAIGLVPVHKLVNCISADGR--------ESSK 637 (1236)
T ss_pred -----------------------------------hccCCccccccccchhhHHHHHHHHHhhccccc--------cccc
Confidence 333444444444444444444433322222221 0011
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
-..++|.+++..++...-...++.+....-++.. +.+.+..+++.+|..+.++++++.++.+|.++|+++..|..++.+
T Consensus 638 ~~~~dav~~~~~al~k~~~~~~~~~fnp~~f~s~-~v~~~~t~~~~~a~~~~qk~~d~~Erll~~~iPd~~Ks~~d~sv~ 716 (1236)
T KOG1839|consen 638 LSLDDAVKYATKALVKLVAVCGPYGFNPAGFYSL-AVVLYHTEDFNQAAIQQQKVLDINERLLGLDIPDTMKSYGDLSVF 716 (1236)
T ss_pred cchHHHHHHHHHHHHHHHhhhcccccCccccccC-ceEecCccccchhhhhhHhHHHHHHHHhccccchhHHhcccccee
Confidence 1233677777777766666666655544444444 889999999999999999999999999999999999999999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH---
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC--- 1168 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~--- 1168 (1403)
++....+.+|+.+-.+++.+.-..++.-+|..+..|.+.+.+-...+ +-++++++.+++.+.+..+.++...+.+
T Consensus 717 p~dgq~l~~aL~~~g~n~ryLg~~~~~~~~~~~a~~~~v~l~~l~~~--ei~~RslKhvlK~~~r~l~~~~i~ta~SH~l 794 (1236)
T KOG1839|consen 717 PYDGQHLELALHYVGRNLRYLGKTCGLSHPNTAATYINVALMELGVG--EIALRSLKHVLKDNLRLLGADHIQTAASHAL 794 (1236)
T ss_pred eecccHHHHHHHHhhHHHHHhhccccccCccccchhhhHHHHHHHHH--HHHHHHHHHHHHHHHhhcchhHHHHHHHHHH
Confidence 99999999999999999999999999889988877777766655555 6677777776666555544444333322
Q ss_pred --------------------------------------------------------------------------------
Q 000589 1169 -------------------------------------------------------------------------------- 1168 (1403)
Q Consensus 1169 -------------------------------------------------------------------------------- 1168 (1403)
T Consensus 795 n~~ls~~~~av~~~~t~~~~~ka~~~~~~~~~~g~~k~~~S~~s~~~l~~s~L~~~I~~d~~~~~~~~~~~~~~~~i~~~ 874 (1236)
T KOG1839|consen 795 NCLLSVMEAAVQKEQTTLEILKAKDLRTQDAAAGTPKPDASISSKGHLSVSDLLKYITADSKNKFTAAHDVKSRETILLK 874 (1236)
T ss_pred HHHhhcccccCCCccchHHHHhhhhhhhhhhccCCCCcccccccccccchhHHHHhccccccccccchhhhhHHHHHhhh
Confidence
Q ss_pred ------------------------------------------------------------HHHHHHHHHHcCCHHHHHHH
Q 000589 1169 ------------------------------------------------------------YHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1169 ------------------------------------------------------------~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
...-+......|.+.+|.+
T Consensus 875 ~~~~~~~~~~~~~~~~~i~~~~r~~~~e~~~~ks~f~~~Di~~~~p~ik~s~P~~~~a~~~~e~gq~~~~e~~~~~~~~- 953 (1236)
T KOG1839|consen 875 NGKSKIAVEKLEKKKRELQKPARNYDFESSEPKSEFNDSDILNLRPVIKHSSPTVSEAKDSPEQGQEALLEDGFSEAYE- 953 (1236)
T ss_pred cccchhHHHHHHHHhhhcchhhhhccccccCCCCCCCcccccccccccccCCCccchhhhhhhhhhhhhcccchhhhhh-
Confidence 1111222233445555555
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-----hChHHHHHHHHHH---
Q 000589 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-----AHPDLIHAFQAVA--- 1260 (1403)
Q Consensus 1189 lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-----~~p~~~~a~~~La--- 1260 (1403)
.-+++..+...+|.-|+.+...+..|+.++ ...+++++|+.... +|.-+.+ ++|.....+.+++
T Consensus 954 ~~~slnl~~~v~~~~h~~~~~~~~~La~l~------~~~~d~~~Ai~~~~--ka~ii~eR~~g~ds~~t~~~y~nlal~~ 1025 (1236)
T KOG1839|consen 954 LPESLNLLNNVMGVLHPEVASKYRSLAKLS------NRLGDNQEAIAQQR--KACIISERVLGKDSPNTKLAYGNLALYE 1025 (1236)
T ss_pred hhhhhhHHHHhhhhcchhHHHHHHHHHHHH------hhhcchHHHHHhcc--cceeeechhccCCCHHHHHHhhHHHHHH
Confidence 556666777777888888888888888888 88899999998776 5544433 6899999999998
Q ss_pred -HhCChHHHHHHHHHHHH--HhhcCCCCccccchHH
Q 000589 1261 -AAGGSGNSGASANNSLN--AALLGETLPRGRGFDE 1293 (1403)
Q Consensus 1261 -~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~~~e 1293 (1403)
..++...|...+.+++. .-..|+.||.+..+..
T Consensus 1026 f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~ 1061 (1236)
T KOG1839|consen 1026 FAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFI 1061 (1236)
T ss_pred HhccCccchhhhHHHHHHhhccccCCCCCchhhhhh
Confidence 66788889999999888 5567889998877543
No 10
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.80 E-value=1.9e-17 Score=212.31 Aligned_cols=295 Identities=14% Similarity=0.088 Sum_probs=218.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH----------
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL---------- 1067 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL---------- 1067 (1403)
...+.++|.+|...|++++|+..+.+++++ .|....++..+|.+|..+|++++|+..+..++
T Consensus 160 ~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--------~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~ 231 (615)
T TIGR00990 160 PVYYSNRAACHNALGDWEKVVEDTTAALEL--------DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQS 231 (615)
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHH
Confidence 346788888888889999999888888887 45667788888888888888888876543322
Q ss_pred --------------------------------------------------------------------------------
Q 000589 1068 -------------------------------------------------------------------------------- 1067 (1403)
Q Consensus 1068 -------------------------------------------------------------------------------- 1067 (1403)
T Consensus 232 ~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~ 311 (615)
T TIGR00990 232 AQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYE 311 (615)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHH
Confidence
Q ss_pred ---HHHHHhcC--CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1068 ---IINERCLG--LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDT 1142 (1403)
Q Consensus 1068 ---~i~er~lg--~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~de 1142 (1403)
..+++.+. ...+....++.++|.++..+|++++|+.+|++++.+ +|....++.++|.++..+|++++
T Consensus 312 ~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--------~P~~~~~~~~la~~~~~~g~~~e 383 (615)
T TIGR00990 312 EAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--------DPRVTQSYIKRASMNLELGDPDK 383 (615)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHCCCHHH
Confidence 12222221 124666778889999999999999999999999975 46667789999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 000589 1143 ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMREL 1222 (1403)
Q Consensus 1143 Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~ 1222 (1403)
|+.+|++++++. +....+++.+|.+|...|++++|+.+|++++.+ +|....++..++.++
T Consensus 384 A~~~~~~al~~~--------p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--------~P~~~~~~~~la~~~---- 443 (615)
T TIGR00990 384 AEEDFDKALKLN--------SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--------DPDFIFSHIQLGVTQ---- 443 (615)
T ss_pred HHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CccCHHHHHHHHHHH----
Confidence 999999998863 344568899999999999999999999999886 344456677888887
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhh-cCCCCccc---------
Q 000589 1223 QMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAAL-LGETLPRG--------- 1288 (1403)
Q Consensus 1223 ~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~-~G~~~p~~--------- 1288 (1403)
..+|++++|+..+. +++...+.++. ++..+| .+|++++|+.+|++|+.... ....+...
T Consensus 444 --~~~g~~~eA~~~~~--~al~~~P~~~~---~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 444 --YKEGSIASSMATFR--RCKKNFPEAPD---VYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred --HHCCCHHHHHHHHH--HHHHhCCCChH---HHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88999999999999 66665544444 444444 88999999999999998322 11111111
Q ss_pred ----cchHHHHHHHHHHHH-------HHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1289 ----RGFDERAARAAAEVR-------KKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1289 ----~~~~era~~a~~e~r-------~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
...++.+......+. ......|.++..+|++++|+..|++++++.++
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~ 574 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELART 574 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence 111222222222221 11223377889999999999999999998765
No 11
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.76 E-value=1.4e-16 Score=204.23 Aligned_cols=274 Identities=18% Similarity=0.161 Sum_probs=182.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+..+|..++..|+|++|+.+|.+++.+. |+ ...|.++|.+|..+|++++|+..+.+|+.+
T Consensus 126 ~a~~~k~~G~~~~~~~~~~~Ai~~y~~al~~~--------p~-~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l------- 189 (615)
T TIGR00990 126 YAAKLKEKGNKAYRNKDFNKAIKLYSKAIECK--------PD-PVYYSNRAACHNALGDWEKVVEDTTAALEL------- 189 (615)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--------Cc-hHHHHHHHHHHHHhCCHHHHHHHHHHHHHc-------
Confidence 36778899999999999999999999999872 22 347999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------------------------------------
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL--------------------------------------------- 1111 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l--------------------------------------------- 1111 (1403)
.|....++.++|.+|..+|++++|+..|..+..+
T Consensus 190 -~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~ 268 (615)
T TIGR00990 190 -DPDYSKALNRRANAYDGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYL 268 (615)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHH
Confidence 4677889999999999999999998766443211
Q ss_pred ------------------------------------------------HHhhc--CCCCHHHHHHHHHHHHHHHHcCCHH
Q 000589 1112 ------------------------------------------------LSLSS--GPDHPDVAATFINVAMMYQDIGKMD 1141 (1403)
Q Consensus 1112 ------------------------------------------------~~~~~--g~d~p~~a~~~~nLA~iy~~~g~~d 1141 (1403)
+...+ +..+|..+.++.++|.++..+|+++
T Consensus 269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~ 348 (615)
T TIGR00990 269 QSFRPKPRPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHL 348 (615)
T ss_pred HHccCCcchhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHH
Confidence 00000 0112444455566666666666666
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Q 000589 1142 TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRE 1221 (1403)
Q Consensus 1142 eAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~ 1221 (1403)
+|+.+|++++.+. |....++..+|.++...|++++|+.++++++++ .+++ ..++..++.++
T Consensus 349 eA~~~~~kal~l~--------P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~-----~p~~---~~~~~~lg~~~--- 409 (615)
T TIGR00990 349 EALADLSKSIELD--------PRVTQSYIKRASMNLELGDPDKAEEDFDKALKL-----NSED---PDIYYHRAQLH--- 409 (615)
T ss_pred HHHHHHHHHHHcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHH---
Confidence 6666666666542 334445566666666666666666666666553 1222 33445555555
Q ss_pred HHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHH
Q 000589 1222 LQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAAR 1297 (1403)
Q Consensus 1222 ~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~ 1297 (1403)
...|++++|+..++ +++++ .|+...++.++| .+|++++|+..|+++++.. |...
T Consensus 410 ---~~~g~~~~A~~~~~--kal~l---~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~------P~~~-------- 467 (615)
T TIGR00990 410 ---FIKGEFAQAGKDYQ--KSIDL---DPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNF------PEAP-------- 467 (615)
T ss_pred ---HHcCCHHHHHHHHH--HHHHc---CccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCh--------
Confidence 55666666666666 33333 333334444444 5566666666666666421 1111
Q ss_pred HHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1298 AAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1298 a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
......|.++...|++++|+..|++++.+..
T Consensus 468 ------~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p 498 (615)
T TIGR00990 468 ------DVYNYYGELLLDQNKFDEAIEKFDTAIELEK 498 (615)
T ss_pred ------HHHHHHHHHHHHccCHHHHHHHHHHHHhcCC
Confidence 1333457788889999999999999998854
No 12
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.66 E-value=3.6e-14 Score=182.43 Aligned_cols=266 Identities=11% Similarity=0.028 Sum_probs=165.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+..+|.++...|++++|+..|.+++.+ .|....++..++.++..+|++++|+..+++++...
T Consensus 111 ~a~~~la~~l~~~g~~~~Ai~~l~~Al~l--------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-------- 174 (656)
T PRK15174 111 EDVLLVASVLLKSKQYATVADLAEQAWLA--------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-------- 174 (656)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC--------
Confidence 34555566666666666666666666555 33344455556666666666666666666554431
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
|.....+..++ .+...|++++|+..+++++... + +........++.++...|++++|+..|++++.+.
T Consensus 175 P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~-----~--~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~---- 242 (656)
T PRK15174 175 PPRGDMIATCL-SFLNKSRLPEDHDLARALLPFF-----A--LERQESAGLAVDTLCAVGKYQEAIQTGESALARG---- 242 (656)
T ss_pred CCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcC-----C--CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC----
Confidence 11222333332 2555666666666666554321 0 1111233456777788888888888888887642
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKL----SHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~e----Ai~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
+....++.+||.+|...|++++ |+.++++++.+ +|....++..++.++ ..+|++++|+
T Consensus 243 ----p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l------~~~g~~~eA~ 304 (656)
T PRK15174 243 ----LDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQF--------NSDNVRIVTLYADAL------IRTGQNEKAI 304 (656)
T ss_pred ----CCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHH------HHCCCHHHHH
Confidence 3446677888888888888885 77888887764 334456677777777 7888999998
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhh
Q 000589 1235 NAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKG 1310 (1403)
Q Consensus 1235 ~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G 1310 (1403)
..++ +++++.+.++ .++..++ ..|++++|+..|++++... |.... .....|
T Consensus 305 ~~l~--~al~l~P~~~---~a~~~La~~l~~~G~~~eA~~~l~~al~~~------P~~~~--------------~~~~~a 359 (656)
T PRK15174 305 PLLQ--QSLATHPDLP---YVRAMYARALRQVGQYTAASDEFVQLAREK------GVTSK--------------WNRYAA 359 (656)
T ss_pred HHHH--HHHHhCCCCH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------ccchH--------------HHHHHH
Confidence 8888 6655544444 3444444 7788999998888887632 22111 111224
Q ss_pred HHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1311 LLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1311 ~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.++...|++++|+..|++++++...
T Consensus 360 ~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 360 AALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhChh
Confidence 4667789999999999999888554
No 13
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.64 E-value=7.3e-14 Score=168.95 Aligned_cols=236 Identities=14% Similarity=0.099 Sum_probs=122.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+..|..+...|++++|+.+|.+++.. +|....++..+|.+|...|++++|+.++++++... .....
T Consensus 37 ~~y~~g~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~ 104 (389)
T PRK11788 37 RDYFKGLNFLLNEQPDKAIDLFIEMLKV--------DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTRE 104 (389)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHH
Confidence 3444555666666666666666666654 23444556666666666666666666666554420 00111
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..||.+|...|++++|+.+|.+++.. +|....++..++.++...|++++|+..+++++.....
T Consensus 105 ~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~--- 173 (389)
T PRK11788 105 QRLLALQELGQDYLKAGLLDRAEELFLQLVDE--------GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGD--- 173 (389)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC--------CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCC---
Confidence 22345566666666666666666666665532 2333445556666666666666666666665543210
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
.........+..+|.++...|++++|+.++++++++ .+....++..++.++ ...|++++|+..+.
T Consensus 174 ~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--------~p~~~~~~~~la~~~------~~~g~~~~A~~~~~- 238 (389)
T PRK11788 174 SLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--------DPQCVRASILLGDLA------LAQGDYAAAIEALE- 238 (389)
T ss_pred cchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--------CcCCHHHHHHHHHHH------HHCCCHHHHHHHHH-
Confidence 011122334455666666666666666666666553 122233444455554 55666666666665
Q ss_pred HHHHHHHhhChHH-HHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKAHPDL-IHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~~p~~-~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
++++. .|.. ..++..++ ..|++++|...+++++.
T Consensus 239 -~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~ 277 (389)
T PRK11788 239 -RVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALE 277 (389)
T ss_pred -HHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 33322 2221 12222222 55666666666666554
No 14
>PF05303 DUF727: Protein of unknown function (DUF727); InterPro: IPR007967 This family consists of several uncharacterised eukaryotic proteins of unknown function.; PDB: 1SGO_A.
Probab=99.64 E-value=3.2e-16 Score=152.08 Aligned_cols=88 Identities=48% Similarity=0.627 Sum_probs=64.7
Q ss_pred cccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCC---CCcccHHHHHHHh
Q 000589 244 KCVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKAN---SEATTLIGLLQKI 320 (1403)
Q Consensus 244 ~~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~---~~~hsL~~Ll~~~ 320 (1403)
..|+.|.+|.-=| -.|||+||+|+|+||++||||+|.+|||||+|+.+.|||.|.+.. ..+|||++||++|
T Consensus 15 ~~V~~i~vs~~Lp------~~~~l~Ylnv~TlEg~~~cIelt~~Gf~V~s~~~D~~~~~~~~~~~~~~~~eTl~~LL~~i 88 (108)
T PF05303_consen 15 FAVKEISVSEKLP------RTGDLIYLNVTTLEGRTYCIELTTKGFRVVSSTFDCMDPDPSQSSLHTKYFETLYALLDSI 88 (108)
T ss_dssp GGSSEEEE--SS-------EETTEEEEEEE-TT--EEEEEEETTEEEEEESSTT---TT---------EESSSHHHHHHH
T ss_pred HHhhEEEecccCC------CCCCEEEEEEEEecCCEEEEEEECCeEEEeeecCCCcCcccccccccchHHhhHHHHHHHH
Confidence 3678888876544 469999999999999999999999999999999999999876433 3589999999999
Q ss_pred cHHHHHHHHHHHHhhhc
Q 000589 321 SSKFKKAFREILDRKAS 337 (1403)
Q Consensus 321 S~~F~~~~~~l~~~~~~ 337 (1403)
||.|++.|.+.|.++++
T Consensus 89 SP~fr~~F~~~L~~kL~ 105 (108)
T PF05303_consen 89 SPLFRKRFGEKLSQKLE 105 (108)
T ss_dssp -HHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHH
Confidence 99999999998877654
No 15
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.60 E-value=4.7e-14 Score=158.90 Aligned_cols=301 Identities=15% Similarity=0.132 Sum_probs=230.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+-.-|.-++..|++...+.+|+.|++.-. .+-.....+|..||.+|+.+++|++|++|...-+.+.+ .+|. ..
T Consensus 19 eLalEGERLck~gdcraGv~ff~aA~qvGT----eDl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar-~lgd-kl 92 (639)
T KOG1130|consen 19 ELALEGERLCKMGDCRAGVDFFKAALQVGT----EDLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLAR-LLGD-KL 92 (639)
T ss_pred HHHHHHHHHHhccchhhhHHHHHHHHHhcc----hHHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHH-Hhcc-hh
Confidence 344457888999999999999999998732 23445677899999999999999999999988877654 3343 34
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC--------------------
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK-------------------- 1139 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~-------------------- 1139 (1403)
.-+.+-.|||..+-.+|.|++|+.+..+-+.+.+.. .+......+++|||.+|...|+
T Consensus 93 GEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--gDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~a 170 (639)
T KOG1130|consen 93 GEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--GDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSA 170 (639)
T ss_pred ccccccccccchhhhhcccchHHHHHHHHhHHHHHH--hHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHH
Confidence 456778899999999999999999999999988876 3456678999999999998764
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
++.|.++|++-|++.+++. +......++-+||+.|+.+|+|+.|+.+.+.-+.|.++. |+ ......++.+|+..+
T Consensus 171 l~~Av~fy~eNL~l~~~lg--Dr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~ef-GD-rAaeRRA~sNlgN~h- 245 (639)
T KOG1130|consen 171 LENAVKFYMENLELSEKLG--DRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEF-GD-RAAERRAHSNLGNCH- 245 (639)
T ss_pred HHHHHHHHHHHHHHHHHhh--hHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHh-hh-HHHHHHhhcccchhh-
Confidence 4567777777777776652 334567789999999999999999999999999987754 43 345567888999988
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCCCccccch
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGETLPRGRGF 1291 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~~p~~~~~ 1291 (1403)
.-.|+++.|+++|. +++.+.. +....++..+.|| -..++++|+.|+++-|. ...++..--..
T Consensus 246 -----iflg~fe~A~ehYK--~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~--- 315 (639)
T KOG1130|consen 246 -----IFLGNFELAIEHYK--LTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL--- 315 (639)
T ss_pred -----hhhcccHhHHHHHH--HHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH---
Confidence 88999999999998 5544432 3444555566666 45789999999999887 22222211111
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1292 DERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1292 ~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
......|+.+...|...+|+...++++.+...
T Consensus 316 ------------RacwSLgna~~alg~h~kAl~fae~hl~~s~e 347 (639)
T KOG1130|consen 316 ------------RACWSLGNAFNALGEHRKALYFAELHLRSSLE 347 (639)
T ss_pred ------------HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHH
Confidence 12334467778889999999999988887665
No 16
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=99.59 E-value=5e-14 Score=158.70 Aligned_cols=263 Identities=16% Similarity=0.154 Sum_probs=212.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....|..+|..|+..++|++|+++..--+.+.+-+. +....+.+..+||.++-.+|.|++|+.++.+-+.+.++. .
T Consensus 54 LSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lg--dklGEAKssgNLGNtlKv~G~fdeA~~cc~rhLd~areL--g 129 (639)
T KOG1130|consen 54 LSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLG--DKLGEAKSSGNLGNTLKVKGAFDEALTCCFRHLDFAREL--G 129 (639)
T ss_pred HHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhc--chhccccccccccchhhhhcccchHHHHHHHHhHHHHHH--h
Confidence 355677899999999999999999888777755442 334567788899999999999999999999999998776 3
Q ss_pred CChhHHHHHHHHHHHHHHCCC--------------------HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQ--------------------TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~--------------------~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
|......+|+|||.+|...|+ ++.|.++|..-+++.+.. .+......+|-+||..|+-
T Consensus 130 Drv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eNL~l~~~l--gDr~aqGRa~GnLGNTyYl 207 (639)
T KOG1130|consen 130 DRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMENLELSEKL--GDRLAQGRAYGNLGNTYYL 207 (639)
T ss_pred HHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHHHHHHHHh--hhHHhhcchhcccCceeee
Confidence 445667899999999998774 456677777777776654 3445667899999999999
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000589 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKT 1216 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~ 1216 (1403)
+|+|+.|+.+.+.-|++.++. |. ....-.++.+||+++.-.|+|+.|+++|+.++.+..+. |. ...-+++.+.|+.
T Consensus 208 LGdf~~ai~~H~~RL~ia~ef-GD-rAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAiel-g~-r~vEAQscYSLgN 283 (639)
T KOG1130|consen 208 LGDFDQAIHFHKLRLEIAQEF-GD-RAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIEL-GN-RTVEAQSCYSLGN 283 (639)
T ss_pred eccHHHHHHHHHHHHHHHHHh-hh-HHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHh-cc-hhHHHHHHHHhhh
Confidence 999999999999999998775 32 24455789999999999999999999999999987764 33 2344556667777
Q ss_pred HHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1217 FKMRELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1217 l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
.| .-.+++++||.+.. +-|.|.. +......+++.|| ..|..++|+.+.++.++
T Consensus 284 ty------tll~e~~kAI~Yh~--rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 284 TY------TLLKEVQKAITYHQ--RHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HH------HHHHHHHHHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 77 77889999999998 7777765 4455667777777 77999999999999888
No 17
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.59 E-value=9.2e-13 Score=159.36 Aligned_cols=279 Identities=14% Similarity=0.085 Sum_probs=205.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++.+|.++...|++++|+.++++++..- .........++..||.+|...|++++|+.+|.+++..
T Consensus 68 ~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~----~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~------- 136 (389)
T PRK11788 68 TVELHLALGNLFRRRGEVDRAIRIHQNLLSRP----DLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDE------- 136 (389)
T ss_pred cHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC----CCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcC-------
Confidence 36678889999999999999999999887631 1112234568899999999999999999999999864
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.+....++..++.++...|++++|+..+++++.... ..........+..+|.++...|++++|+.+|+++++..
T Consensus 137 -~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-- 210 (389)
T PRK11788 137 -GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGG---DSLRVEIAHFYCELAQQALARGDLDAARALLKKALAAD-- 210 (389)
T ss_pred -CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcC---CcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHC--
Confidence 345567889999999999999999999999886421 11122345667899999999999999999999999863
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+....++..+|.+|...|++++|+.++++++... + .....++..++.+| ...|++++|+..
T Consensus 211 ------p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-----p--~~~~~~~~~l~~~~------~~~g~~~~A~~~ 271 (389)
T PRK11788 211 ------PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-----P--EYLSEVLPKLMECY------QALGDEAEGLEF 271 (389)
T ss_pred ------cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----h--hhHHHHHHHHHHHH------HHcCCHHHHHHH
Confidence 3345678899999999999999999999998741 1 12244566677777 889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhh
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRP 1315 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~ 1315 (1403)
++ ++++..++.+ ....+..+. ..|++++|...++++++. +|...... .+ .........
T Consensus 272 l~--~~~~~~p~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~------~P~~~~~~-----------~l-~~~~~~~~~ 330 (389)
T PRK11788 272 LR--RALEEYPGAD-LLLALAQLLEEQEGPEAAQALLREQLRR------HPSLRGFH-----------RL-LDYHLAEAE 330 (389)
T ss_pred HH--HHHHhCCCch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh------CcCHHHHH-----------HH-HHHhhhccC
Confidence 88 5555433322 112222222 789999999999999874 22222200 01 111111222
Q ss_pred CCCchhhhHHHHHHHHH
Q 000589 1316 HGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1316 ~g~~~eA~~~l~qaL~i 1332 (1403)
.|+..+|+..+++.+..
T Consensus 331 ~g~~~~a~~~~~~~~~~ 347 (389)
T PRK11788 331 EGRAKESLLLLRDLVGE 347 (389)
T ss_pred CccchhHHHHHHHHHHH
Confidence 57889999999998864
No 18
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.59 E-value=1.4e-13 Score=188.13 Aligned_cols=173 Identities=13% Similarity=0.071 Sum_probs=139.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-----------HHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHRE-----------VANCCRYLAMVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~-----------~a~a~~~LA~iy~~~G~~~eAi~~~~k 1065 (1403)
.+..++.+|.++..+|++++|+.+|++++++. ++++. ....+..+|.++...|++++|+.+|++
T Consensus 302 ~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~-----p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~ 376 (1157)
T PRK11447 302 DSEALGALGQAYSQQGDRARAVAQFEKALALD-----PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQ 376 (1157)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 36778899999999999999999999999873 22221 122344568899999999999999999
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH----------------------
Q 000589 1066 ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV---------------------- 1123 (1403)
Q Consensus 1066 AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~---------------------- 1123 (1403)
++.+ +|....++..||.++..+|++++|+.+|++++.+. ++++..
T Consensus 377 Al~~--------~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 377 ARQV--------DNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred HHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 9987 35556788999999999999999999999999752 111110
Q ss_pred -----------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1124 -----------------AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1124 -----------------a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
...+..+|.++...|++++|+.+|++++++. |....+++.+|.+|...|++++|+
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~--------P~~~~~~~~LA~~~~~~G~~~~A~ 515 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD--------PGSVWLTYRLAQDLRQAGQRSQAD 515 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 1234457788888999999999999999864 445567899999999999999999
Q ss_pred HHHHHHHHH
Q 000589 1187 QHEKKTYDI 1195 (1403)
Q Consensus 1187 ~~lkkAl~i 1195 (1403)
..+++++..
T Consensus 516 ~~l~~al~~ 524 (1157)
T PRK11447 516 ALMRRLAQQ 524 (1157)
T ss_pred HHHHHHHHc
Confidence 999998764
No 19
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.58 E-value=2e-13 Score=186.67 Aligned_cols=280 Identities=16% Similarity=0.133 Sum_probs=198.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH-------------------------------------
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREV------------------------------------- 1039 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~------------------------------------- 1039 (1403)
.+..++.+|.++..+|++++|+.+|++++.+. +.+...
T Consensus 384 ~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~-----p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~ 458 (1157)
T PRK11447 384 DSYAVLGLGDVAMARKDYAAAERYYQQALRMD-----PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERS 458 (1157)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 35678889999999999999999999998762 111110
Q ss_pred --HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1040 --ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1040 --a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
...+..+|.++...|++++|+.+|++++.+ .|+...++..+|.+|...|++++|+..|++++.+
T Consensus 459 l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--------~P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~------ 524 (1157)
T PRK11447 459 LQNDRLAQQAEALENQGKWAQAAELQRQRLAL--------DPGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQ------ 524 (1157)
T ss_pred hhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------
Confidence 123445677788899999999999999987 3556678899999999999999999999999864
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH---------HH------------------------HHhCCCcHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK---------NE------------------------RLLGEEHIQ 1164 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l---------~~------------------------~~~G~~~~~ 1164 (1403)
+|.....++.+|..+...+++++|+.+++++... .. ..+. .+|.
T Consensus 525 --~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~-~~p~ 601 (1157)
T PRK11447 525 --KPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLR-QQPP 601 (1157)
T ss_pred --CCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHH-hCCC
Confidence 2333445667777777888888888777653210 00 0000 1223
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAID 1244 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALe 1244 (1403)
....+..||.+|...|++++|+.+|++++.+ +|....++..++.++ ..+|++++|+..+. +++.
T Consensus 602 ~~~~~~~La~~~~~~g~~~~A~~~y~~al~~--------~P~~~~a~~~la~~~------~~~g~~~eA~~~l~--~ll~ 665 (1157)
T PRK11447 602 STRIDLTLADWAQQRGDYAAARAAYQRVLTR--------EPGNADARLGLIEVD------IAQGDLAAARAQLA--KLPA 665 (1157)
T ss_pred CchHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH--HHhc
Confidence 3456778999999999999999999999875 233455677888877 88899999999888 4443
Q ss_pred HHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCch
Q 000589 1245 ILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPA 1320 (1403)
Q Consensus 1245 i~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~ 1320 (1403)
..|+...++..+| ..|++++|..+|++++... +..+.... .+ ......+.++..+|+++
T Consensus 666 ---~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~---~~~~~~~~---~a--------~~~~~~a~~~~~~G~~~ 728 (1157)
T PRK11447 666 ---TANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA---KSQPPSME---SA--------LVLRDAARFEAQTGQPQ 728 (1157)
T ss_pred ---cCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC---ccCCcchh---hH--------HHHHHHHHHHHHcCCHH
Confidence 3444344444444 7899999999999988632 11121111 00 12222355778889999
Q ss_pred hhhHHHHHHHH
Q 000589 1321 QALPPLTQLLN 1331 (1403)
Q Consensus 1321 eA~~~l~qaL~ 1331 (1403)
+|+..|++++.
T Consensus 729 ~A~~~y~~Al~ 739 (1157)
T PRK11447 729 QALETYKDAMV 739 (1157)
T ss_pred HHHHHHHHHHh
Confidence 99999999986
No 20
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.57 E-value=6.3e-13 Score=176.34 Aligned_cols=240 Identities=18% Similarity=0.134 Sum_probs=153.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--------
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII-------- 1069 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i-------- 1069 (1403)
+..++..|..++.+|++++|+..+.+++.. +|....+++.+|.+|..+|++++|+..+++++..
T Consensus 22 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 93 (899)
T TIGR02917 22 PESLIEAAKSYLQKNKYKAAIIQLKNALQK--------DPNDAEARFLLGKIYLALGDYAAAEKELRKALSLGYPKNQVL 93 (899)
T ss_pred HHHHHHHHHHHHHcCChHhHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCChhhhH
Confidence 344555566666666666666666665554 3334455555666666666666666665555432
Q ss_pred -------------------HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1070 -------------------NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1070 -------------------~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+......+.+.....+..+|.++...|++++|+..|++++.. +|....++..+
T Consensus 94 ~~~a~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--------~~~~~~~~~~l 165 (899)
T TIGR02917 94 PLLARAYLLQGKFQQVLDELPGKTLLDDEGAAELLALRGLAYLGLGQLELAQKSYEQALAI--------DPRSLYAKLGL 165 (899)
T ss_pred HHHHHHHHHCCCHHHHHHhhcccccCCchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCChhhHHHH
Confidence 111111234566677788888888888888888888888764 23345567888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS 1210 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a 1210 (1403)
|.++...|++++|+.++++++... +....++..+|.++...|++++|+..+++++.+ .+.+ ..+
T Consensus 166 a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~-----~p~~---~~~ 229 (899)
T TIGR02917 166 AQLALAENRFDEARALIDEVLTAD--------PGNVDALLLKGDLLLSLGNIELALAAYRKAIAL-----RPNN---PAV 229 (899)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-----CCCC---HHH
Confidence 888888888888888888887642 334456777888888888888888888888764 2333 334
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1211 QNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1211 ~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+..++.++ ...|++++|...+. ++++..+.++........+. ..|++++|+..|+++++
T Consensus 230 ~~~~~~~~------~~~g~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~ 289 (899)
T TIGR02917 230 LLALATIL------IEAGEFEEAEKHAD--ALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALK 289 (899)
T ss_pred HHHHHHHH------HHcCCHHHHHHHHH--HHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 45555555 66788888887777 54444444333222222222 66788888888887776
No 21
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=99.56 E-value=3.6e-13 Score=178.64 Aligned_cols=282 Identities=19% Similarity=0.180 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...++.++..+...|++++|+.++++++.. .|....++..+|.+|...|++++|+.+|++++..
T Consensus 567 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------- 630 (899)
T TIGR02917 567 IEPALALAQYYLGKGQLKKALAILNEAADA--------APDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLAL-------- 630 (899)
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------
Confidence 344556677777777777777777766554 2223445667777777777777777777777654
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
.|....++..+|.++...|++++|+.+|++++.+ +|....++..++.++...|++++|+.+++.+....
T Consensus 631 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--- 699 (899)
T TIGR02917 631 QPDSALALLLLADAYAVMKNYAKAITSLKRALEL--------KPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH--- 699 (899)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 2333455666777777777777777777776653 23333445556666666666666666655544321
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+.....+..+|.++...|++++|+.+|++++... ++. .....++.++ ...|++++|+..+
T Consensus 700 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-----~~~----~~~~~l~~~~------~~~g~~~~A~~~~ 759 (899)
T TIGR02917 700 -----PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA-----PSS----QNAIKLHRAL------LASGNTAEAVKTL 759 (899)
T ss_pred -----cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCc----hHHHHHHHHH------HHCCCHHHHHHHH
Confidence 2233345556666666666666666666655431 111 2233344444 4555555555555
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccch-------------HHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGF-------------DERAARAAA 1300 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~-------------~era~~a~~ 1300 (1403)
. + .+..+|....++..++ ..|++++|..+|+++++.. +.++..... .+...++..
T Consensus 760 ~--~---~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~---p~~~~~~~~l~~~~~~~~~~~A~~~~~~~~~ 831 (899)
T TIGR02917 760 E--A---WLKTHPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA---PDNAVVLNNLAWLYLELKDPRALEYAEKALK 831 (899)
T ss_pred H--H---HHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHh
Confidence 5 2 2222333333333333 4455555555555555411 111110000 000000000
Q ss_pred ---HHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1301 ---EVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1301 ---e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
.........|.++...|++++|+..|+++++...
T Consensus 832 ~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 868 (899)
T TIGR02917 832 LAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAP 868 (899)
T ss_pred hCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 0011222346677888999999999999998643
No 22
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.55 E-value=8.1e-13 Score=170.02 Aligned_cols=269 Identities=10% Similarity=0.028 Sum_probs=207.4
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 991 SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 991 ~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
..|.+ ...++.+|..++..|++++|+..|++++.+ +|....++..+|.++..+|++++|+..|++++.+
T Consensus 71 ~~p~~--~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~--------~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l- 139 (656)
T PRK15174 71 TAKNG--RDLLRRWVISPLASSQPDAVLQVVNKLLAV--------NVCQPEDVLLVASVLLKSKQYATVADLAEQAWLA- 139 (656)
T ss_pred hCCCc--hhHHHHHhhhHhhcCCHHHHHHHHHHHHHh--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34444 556777889999999999999999999988 5666778999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.|....++..+|.++...|++++|+..+++++... ++++ ..+..++ .+...|++++|+..++++
T Consensus 140 -------~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~-----P~~~---~a~~~~~-~l~~~g~~~eA~~~~~~~ 203 (656)
T PRK15174 140 -------FSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV-----PPRG---DMIATCL-SFLNKSRLPEDHDLARAL 203 (656)
T ss_pred -------CCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-----CCCH---HHHHHHH-HHHHcCCHHHHHHHHHHH
Confidence 36667788999999999999999999999877542 3333 3344443 478899999999999988
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQK 1230 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~ 1230 (1403)
+.... .........++.++...|++++|+..+++++.+ +|....++..++.++ ..+|++
T Consensus 204 l~~~~-------~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--------~p~~~~~~~~Lg~~l------~~~G~~ 262 (656)
T PRK15174 204 LPFFA-------LERQESAGLAVDTLCAVGKYQEAIQTGESALAR--------GLDGAALRRSLGLAY------YQSGRS 262 (656)
T ss_pred HhcCC-------CcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHH------HHcCCc
Confidence 76421 111223456788999999999999999999875 234456677888887 788998
Q ss_pred HH----HHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH
Q 000589 1231 GQ----AFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV 1302 (1403)
Q Consensus 1231 ~e----Ai~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~ 1302 (1403)
++ |+..++ +++++ .|+...++..+| .+|++++|+.++++++... +.++.
T Consensus 263 ~eA~~~A~~~~~--~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~---P~~~~--------------- 319 (656)
T PRK15174 263 REAKLQAAEHWR--HALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATH---PDLPY--------------- 319 (656)
T ss_pred hhhHHHHHHHHH--HHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC---CCCHH---------------
Confidence 86 777777 55554 455556666666 8899999999999999742 22222
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
.....|.++...|++++|+..|++++..
T Consensus 320 --a~~~La~~l~~~G~~~eA~~~l~~al~~ 347 (656)
T PRK15174 320 --VRAMYARALRQVGQYTAASDEFVQLARE 347 (656)
T ss_pred --HHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 1223455778889999999999998875
No 23
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.55 E-value=1.2e-13 Score=165.78 Aligned_cols=242 Identities=14% Similarity=0.089 Sum_probs=198.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--------------------------HHhcCCCCHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSIL--------------------------QQVTGPMHREVANCCRYLAMVLY 1051 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~--------------------------~~i~g~~~p~~a~a~~~LA~iy~ 1051 (1403)
...+..+|+.|+.+++|++|..+|+.+-.+. -+.+-..+|....++..+|.+|.
T Consensus 353 ~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfS 432 (638)
T KOG1126|consen 353 GWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFS 432 (638)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhh
Confidence 3788889999999999999999998764431 01111223445567888999999
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
.+++++.|+..+++|+.+ +|..+.+|..+|.=+....+++.|..+|+.|+.+ +|....+|+-||
T Consensus 433 LQkdh~~Aik~f~RAiQl--------dp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~--------~~rhYnAwYGlG 496 (638)
T KOG1126|consen 433 LQKDHDTAIKCFKRAIQL--------DPRFAYAYTLLGHESIATEEFDKAMKSFRKALGV--------DPRHYNAWYGLG 496 (638)
T ss_pred hhhHHHHHHHHHHHhhcc--------CCccchhhhhcCChhhhhHHHHhHHHHHHhhhcC--------CchhhHHHHhhh
Confidence 999999999999999998 5778889999999999999999999999999965 467788999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQ 1211 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~ 1211 (1403)
.+|.++++++.|+-+|++|+++. |....+...+|.+|.++|+.++|+.+|++|+.+ ++...-..
T Consensus 497 ~vy~Kqek~e~Ae~~fqkA~~IN--------P~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~l--------d~kn~l~~ 560 (638)
T KOG1126|consen 497 TVYLKQEKLEFAEFHFQKAVEIN--------PSNSVILCHIGRIQHQLKRKDKALQLYEKAIHL--------DPKNPLCK 560 (638)
T ss_pred hheeccchhhHHHHHHHhhhcCC--------ccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhc--------CCCCchhH
Confidence 99999999999999999999976 666778889999999999999999999999875 22223334
Q ss_pred HHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcC
Q 000589 1212 NWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLG 1282 (1403)
Q Consensus 1212 ~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G 1282 (1403)
+..+.++ ...+++.+|+..++ ++-.--|+...++..+| +.|+...|+..|-=|++...-|
T Consensus 561 ~~~~~il------~~~~~~~eal~~LE-----eLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg 624 (638)
T KOG1126|consen 561 YHRASIL------FSLGRYVEALQELE-----ELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKG 624 (638)
T ss_pred HHHHHHH------HhhcchHHHHHHHH-----HHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCcc
Confidence 4555555 88999999998888 55556688888888888 7899999999998888754433
No 24
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.52 E-value=1.5e-12 Score=143.61 Aligned_cols=201 Identities=18% Similarity=0.164 Sum_probs=164.9
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....+..++.+|..+...|++++|+..+.+++.. +|....++..+|.+|..+|++++|+.++++++...
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3455788999999999999999999999999876 45567889999999999999999999999999862
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
|.....+.++|.++...|++++|+.++++++.. ..++.....+.++|.++...|++++|+.+|.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIED------PLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhc------cccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 344568899999999999999999999999863 223445667889999999999999999999999986
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +.....+..+|.++...|++++|+.++++++.+ .+.++.. +..++.++ ...|+.++|
T Consensus 165 ~--------~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~---~~~~~~~~------~~~~~~~~a 222 (234)
T TIGR02521 165 D--------PQRPESLLELAELYYLRGQYKDARAYLERYQQT-----YNQTAES---LWLGIRIA------RALGDVAAA 222 (234)
T ss_pred C--------cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCCHHH---HHHHHHHH------HHHhhHHHH
Confidence 4 233457889999999999999999999999876 2333333 33444454 678888888
Q ss_pred HHHHH
Q 000589 1234 FNAAS 1238 (1403)
Q Consensus 1234 i~~l~ 1238 (1403)
..+.+
T Consensus 223 ~~~~~ 227 (234)
T TIGR02521 223 QRYGA 227 (234)
T ss_pred HHHHH
Confidence 87665
No 25
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.51 E-value=2.9e-13 Score=162.49 Aligned_cols=277 Identities=15% Similarity=0.129 Sum_probs=211.2
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-----
Q 000589 999 KNLVEMGKVQLA--EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE----- 1071 (1403)
Q Consensus 999 ~~l~~lG~~~~~--~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e----- 1071 (1403)
..+..+|..|.. +-+..+|+..|.+ + ...++.+.+++..+|..|+.+++|++|..+|+.+-++..
T Consensus 318 ~llr~~~~~~~~~s~y~~~~A~~~~~k-l-------p~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~ 389 (638)
T KOG1126|consen 318 ELLRGLGEGYRSLSQYNCREALNLFEK-L-------PSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKG 389 (638)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-h-------HHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccc
Confidence 334444544433 3345566666666 2 233677789999999999999999999999998655320
Q ss_pred ---------------------HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1072 ---------------------RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1072 ---------------------r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+.+-...+....+|..+|.||.-+++++.|+++|+||+.+ +|..+.+|..+
T Consensus 390 meiyST~LWHLq~~v~Ls~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--------dp~faYayTLl 461 (638)
T KOG1126|consen 390 MEIYSTTLWHLQDEVALSYLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--------DPRFAYAYTLL 461 (638)
T ss_pred hhHHHHHHHHHHhhHHHHHHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--------CCccchhhhhc
Confidence 1111223445567889999999999999999999999976 57789999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS 1210 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a 1210 (1403)
|.=+....+||.|..+|+.||.+. +..-.+|+.||.+|.++++++.|+-+|++|++| +|.....
T Consensus 462 GhE~~~~ee~d~a~~~fr~Al~~~--------~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~I--------NP~nsvi 525 (638)
T KOG1126|consen 462 GHESIATEEFDKAMKSFRKALGVD--------PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEI--------NPSNSVI 525 (638)
T ss_pred CChhhhhHHHHhHHHHHHhhhcCC--------chhhHHHHhhhhheeccchhhHHHHHHHhhhcC--------CccchhH
Confidence 999999999999999999999865 455678999999999999999999999999987 6777777
Q ss_pred HHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCcccc
Q 000589 1211 QNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGR 1289 (1403)
Q Consensus 1211 ~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~ 1289 (1403)
+..++.++ .+.|+.++|+.+++ +|+.+...+|....-...+- ..++|.+|+..+++.-+.. |.-.
T Consensus 526 ~~~~g~~~------~~~k~~d~AL~~~~--~A~~ld~kn~l~~~~~~~il~~~~~~~eal~~LEeLk~~v------P~es 591 (638)
T KOG1126|consen 526 LCHIGRIQ------HQLKRKDKALQLYE--KAIHLDPKNPLCKYHRASILFSLGRYVEALQELEELKELV------PQES 591 (638)
T ss_pred HhhhhHHH------HHhhhhhHHHHHHH--HHHhcCCCCchhHHHHHHHHHhhcchHHHHHHHHHHHHhC------cchH
Confidence 78888887 89999999999999 77666655543322222222 6799999999888865522 1111
Q ss_pred chHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1290 GFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1290 ~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
......|..|.+.|+...|+..|.=|+++-..
T Consensus 592 --------------~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 592 --------------SVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred --------------HHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 13344577888889999999999988887554
No 26
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.51 E-value=1.5e-12 Score=171.41 Aligned_cols=227 Identities=14% Similarity=0.009 Sum_probs=183.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++.+|.++.. +++.+|+..|.+++... |.. .....+|.++...|++++|+..|++++.. .
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--------Pd~-~~~L~lA~al~~~Gr~eeAi~~~rka~~~------~ 539 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--------PDA-WQHRAVAYQAYQVEDYATALAAWQKISLH------D 539 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--------Cch-HHHHHHHHHHHHCCCHHHHHHHHHHHhcc------C
Confidence 68889999999987 89999999999998772 322 23666788888999999999999997543 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+. ...+.++|.++...|++++|+.+|++++.+ +|.....+..++..+...|++++|+.+|++++++.
T Consensus 540 --p~-~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~-- 606 (987)
T PRK09782 540 --MS-NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GLGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA-- 606 (987)
T ss_pred --CC-cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--
Confidence 11 234678899999999999999999999864 23344555667777778899999999999999864
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|. ...+.++|.++...|++++|+.++++++.+ +|....++.+++.++ ...|++++|+..
T Consensus 607 ------P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l--------~Pd~~~a~~nLG~aL------~~~G~~eeAi~~ 665 (987)
T PRK09782 607 ------PS-ANAYVARATIYRQRHNVPAAVSDLRAALEL--------EPNNSNYQAALGYAL------WDSGDIAQSREM 665 (987)
T ss_pred ------CC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHH
Confidence 33 568899999999999999999999999986 344456788898887 889999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
+. +++++ +|+...++.++| ..|++++|+.+|++++..
T Consensus 666 l~--~AL~l---~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l 706 (987)
T PRK09782 666 LE--RAHKG---LPDDPALIRQLAYVNQRLDDMAATQHYARLVIDD 706 (987)
T ss_pred HH--HHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99 66555 455556667776 889999999999999983
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.50 E-value=3.4e-12 Score=157.90 Aligned_cols=287 Identities=15% Similarity=0.149 Sum_probs=221.8
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.....+..++.+|.+|+.|..+|+|++|..+|.+++... +++ ..-.+..||++|...|+++.|+.+|++.+..
T Consensus 299 ~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d~--~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~ 371 (1018)
T KOG2002|consen 299 NTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----NDN--FVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ 371 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CCC--ccccccchhHHHHHhchHHHHHHHHHHHHHh
Confidence 334556778999999999999999999999999998872 222 3567889999999999999999999999887
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCC----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLN----QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G----~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
. |....++..||.+|...+ ..+.|..++.+++.. .|....+|..+|.+|....-+. ++.
T Consensus 372 ~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~--------~~~d~~a~l~laql~e~~d~~~-sL~ 434 (1018)
T KOG2002|consen 372 L--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ--------TPVDSEAWLELAQLLEQTDPWA-SLD 434 (1018)
T ss_pred C--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc--------ccccHHHHHHHHHHHHhcChHH-HHH
Confidence 4 555666777888887775 557777777777754 3677889999999886655554 499
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHH
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS--RTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~--~t~~a~~~La~l~~r~~~ 1223 (1403)
+|..|+.+.....+. .-...++++|..++.+|++.+|..++..|+..+......+.. ......++|+.++
T Consensus 435 ~~~~A~d~L~~~~~~---ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~----- 506 (1018)
T KOG2002|consen 435 AYGNALDILESKGKQ---IPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLL----- 506 (1018)
T ss_pred HHHHHHHHHHHcCCC---CCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHH-----
Confidence 999999988776544 335678999999999999999999999999986544333221 2234567777777
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAA 1299 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~ 1299 (1403)
...+++..|..+|. .|+..||..+.++..|+ ..++..+|..+++.+++.. ..+|..+.
T Consensus 507 -E~l~~~~~A~e~Yk-----~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d---~~np~ars--------- 568 (1018)
T KOG2002|consen 507 -EELHDTEVAEEMYK-----SILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID---SSNPNARS--------- 568 (1018)
T ss_pred -HhhhhhhHHHHHHH-----HHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc---cCCcHHHH---------
Confidence 88999999999999 99999999999999997 5689999999999999732 34454444
Q ss_pred HHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1300 AEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1300 ~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
-.|.++.....+..|...|+.++.-..
T Consensus 569 --------l~G~~~l~k~~~~~a~k~f~~i~~~~~ 595 (1018)
T KOG2002|consen 569 --------LLGNLHLKKSEWKPAKKKFETILKKTS 595 (1018)
T ss_pred --------HHHHHHHhhhhhcccccHHHHHHhhhc
Confidence 225455555566666666666655444
No 28
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.49 E-value=9.6e-12 Score=143.92 Aligned_cols=209 Identities=12% Similarity=0.155 Sum_probs=173.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
|..+|.+|..+.+-++....|.+|..+ +|+....|+..|++++-+++|++|+.-|++|+.+ .|+
T Consensus 363 yI~~a~~y~d~~~~~~~~~~F~~A~~l--------dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe 426 (606)
T KOG0547|consen 363 YIKRAAAYADENQSEKMWKDFNKAEDL--------DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPE 426 (606)
T ss_pred HHHHHHHHhhhhccHHHHHHHHHHHhc--------CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------Chh
Confidence 788999999999999999999999998 6667778999999999999999999999999998 588
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.+.+|..++.+.++++++++++..|+.+..-+ |.....|+..|.++..+++|+.|++.|..|+++-....+-
T Consensus 427 ~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF--------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~ 498 (606)
T KOG0547|consen 427 NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF--------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI 498 (606)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence 99999999999999999999999999998653 6677789999999999999999999999999986542211
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
.--....+.-.+..+ .-.+++..|++++++|+++ +|..-.++..|+++. .++++.++|+++++
T Consensus 499 ~v~~~plV~Ka~l~~-qwk~d~~~a~~Ll~KA~e~--------Dpkce~A~~tlaq~~------lQ~~~i~eAielFE-- 561 (606)
T KOG0547|consen 499 IVNAAPLVHKALLVL-QWKEDINQAENLLRKAIEL--------DPKCEQAYETLAQFE------LQRGKIDEAIELFE-- 561 (606)
T ss_pred cccchhhhhhhHhhh-chhhhHHHHHHHHHHHHcc--------CchHHHHHHHHHHHH------HHHhhHHHHHHHHH--
Confidence 100111112222222 2348999999999999986 788888999999887 89999999999999
Q ss_pred HHHHHHhhCh
Q 000589 1241 KAIDILKAHP 1250 (1403)
Q Consensus 1241 kALei~~~~p 1250 (1403)
+++.+.+.-.
T Consensus 562 ksa~lArt~~ 571 (606)
T KOG0547|consen 562 KSAQLARTES 571 (606)
T ss_pred HHHHHHHhHH
Confidence 7776665433
No 29
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.49 E-value=1.1e-11 Score=140.81 Aligned_cols=227 Identities=16% Similarity=0.156 Sum_probs=180.3
Q ss_pred HHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1000 NLVEMGKVQLAEG--LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G--~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..++..+++.+| ++.+|..|...|+.+ +...+.++.+-|.+.+..|++++|.++|++|+.-
T Consensus 456 aa~nl~~l~flqggk~~~~aqqyad~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~n-------- 519 (840)
T KOG2003|consen 456 AANNLCALRFLQGGKDFADAQQYADIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALNN-------- 519 (840)
T ss_pred HhhhhHHHHHHhcccchhHHHHHHHHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHcC--------
Confidence 3345555555544 688999999999887 3445678889999999999999999999999864
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
......+++|+|..+..+|++++|+.+|.+...++. ..+..++.+|.+|..+.+..+|+++|.++..+.
T Consensus 520 dasc~ealfniglt~e~~~~ldeald~f~klh~il~--------nn~evl~qianiye~led~aqaie~~~q~~sli--- 588 (840)
T KOG2003|consen 520 DASCTEALFNIGLTAEALGNLDEALDCFLKLHAILL--------NNAEVLVQIANIYELLEDPAQAIELLMQANSLI--- 588 (840)
T ss_pred chHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHH--------hhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccC---
Confidence 345678999999999999999999999999887763 357789999999999999999999999988765
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
|....++..||.+|-+.|+-..|.+++-..+..| |-..+...||+.+| ....-+++|+.++
T Consensus 589 -----p~dp~ilskl~dlydqegdksqafq~~ydsyryf--------p~nie~iewl~ayy------idtqf~ekai~y~ 649 (840)
T KOG2003|consen 589 -----PNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYF--------PCNIETIEWLAAYY------IDTQFSEKAINYF 649 (840)
T ss_pred -----CCCHHHHHHHHHHhhcccchhhhhhhhhhccccc--------CcchHHHHHHHHHH------HhhHHHHHHHHHH
Confidence 4445678899999999999999999988777653 44566778999888 6677788899998
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+ +|.-+ .|....-...++ +.|+|++|...|+...+
T Consensus 650 e--kaali---qp~~~kwqlmiasc~rrsgnyqka~d~yk~~hr 688 (840)
T KOG2003|consen 650 E--KAALI---QPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHR 688 (840)
T ss_pred H--HHHhc---CccHHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 8 54333 333332222223 88999999999988765
No 30
>PRK12370 invasion protein regulator; Provisional
Probab=99.47 E-value=4.3e-12 Score=160.64 Aligned_cols=247 Identities=13% Similarity=0.021 Sum_probs=186.2
Q ss_pred CCchhHHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---------CCHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAE---GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---------GDMAGA 1059 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~---G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---------G~~~eA 1059 (1403)
.+...++..++..|..++.. +.+++|+.+|++|+++ +|..+.++..||.+|..+ +++++|
T Consensus 252 ~~~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--------dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A 323 (553)
T PRK12370 252 ELNSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--------SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKA 323 (553)
T ss_pred CCCChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--------CCccHHHHHHHHHHHHHHHHcCCcccchHHHHH
Confidence 34455666777778766544 3478999999999987 567778888899887643 348999
Q ss_pred HHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC
Q 000589 1060 IMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK 1139 (1403)
Q Consensus 1060 i~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~ 1139 (1403)
+..+++|+.+ .|....++..+|.++...|++++|+.+|++|+.+ .|..+.+++++|.++...|+
T Consensus 324 ~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~G~ 387 (553)
T PRK12370 324 KEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLL--------SPISADIKYYYGWNLFMAGQ 387 (553)
T ss_pred HHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCC
Confidence 9999999987 4666778999999999999999999999999986 35566779999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
+++|+.+|++++++. +. ....+..++.++...|++++|+.++++++... .+....++.+++.++
T Consensus 388 ~~eAi~~~~~Al~l~-----P~---~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-------~p~~~~~~~~la~~l- 451 (553)
T PRK12370 388 LEEALQTINECLKLD-----PT---RAAAGITKLWITYYHTGIDDAIRLGDELRSQH-------LQDNPILLSMQVMFL- 451 (553)
T ss_pred HHHHHHHHHHHHhcC-----CC---ChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-------cccCHHHHHHHHHHH-
Confidence 999999999999875 22 22334456667778999999999999887531 233445667788887
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHHHHHHHHHhhcCCCCccc
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGASANNSLNAALLGETLPRG 1288 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~~ekAL~~~~~G~~~p~~ 1288 (1403)
..+|++++|...+. ++....|....+...++ ..+.-++|...+++.++....+..++..
T Consensus 452 -----~~~G~~~eA~~~~~-----~~~~~~~~~~~~~~~l~~~~~~~g~~a~~~l~~ll~~~~~~~~~~~~ 512 (553)
T PRK12370 452 -----SLKGKHELARKLTK-----EISTQEITGLIAVNLLYAEYCQNSERALPTIREFLESEQRIDNNPGL 512 (553)
T ss_pred -----HhCCCHHHHHHHHH-----HhhhccchhHHHHHHHHHHHhccHHHHHHHHHHHHHHhhHhhcCchH
Confidence 78999999999887 55666666555555555 2222358888888877744444444433
No 31
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1.6e-11 Score=141.42 Aligned_cols=196 Identities=14% Similarity=0.198 Sum_probs=176.0
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
+|..|...++.+.|+.+|++|+.+ +|....++..+|.-|..+.+...|++.|++|+++ .|..-.
T Consensus 336 IaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~p~DyR 399 (559)
T KOG1155|consen 336 IANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------NPRDYR 399 (559)
T ss_pred ehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------CchhHH
Confidence 588999999999999999999998 7889999999999999999999999999999998 467778
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+++.||..|..++-+.=|+-||++|+.+ .|.....|..||.||..+++.++|+.+|.+|+....
T Consensus 400 AWYGLGQaYeim~Mh~YaLyYfqkA~~~--------kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d-------- 463 (559)
T KOG1155|consen 400 AWYGLGQAYEIMKMHFYALYYFQKALEL--------KPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGD-------- 463 (559)
T ss_pred HHhhhhHHHHHhcchHHHHHHHHHHHhc--------CCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccc--------
Confidence 9999999999999999999999999976 355667799999999999999999999999998641
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....++..||.+|..+++..+|..+|++.++.. ..-|...+.+..+..+|+..+ ...+++++|..+..
T Consensus 464 te~~~l~~LakLye~l~d~~eAa~~yek~v~~~-~~eg~~~~~t~ka~~fLA~~f------~k~~~~~~As~Ya~ 531 (559)
T KOG1155|consen 464 TEGSALVRLAKLYEELKDLNEAAQYYEKYVEVS-ELEGEIDDETIKARLFLAEYF------KKMKDFDEASYYAT 531 (559)
T ss_pred cchHHHHHHHHHHHHHHhHHHHHHHHHHHHHHH-HhhcccchHHHHHHHHHHHHH------HhhcchHHHHHHHH
Confidence 245689999999999999999999999999876 455777888999999999888 88899999887665
No 32
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.46 E-value=1.3e-12 Score=150.86 Aligned_cols=236 Identities=17% Similarity=0.160 Sum_probs=197.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.|.++...|..++..|++-.|...|..++.+ +|.....|..+|.+|....+.++-..+|.+|..+
T Consensus 325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l--------~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~l------- 389 (606)
T KOG0547|consen 325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKL--------DPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDL------- 389 (606)
T ss_pred HHHHHHHhhhhhhhcCCchhhhhhHHHHHhc--------CcccchHHHHHHHHHhhhhccHHHHHHHHHHHhc-------
Confidence 4788889999999999999999999999998 4444555999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+|+....|+..|.+++-+++|++|+.-|++++.+ +|..+..+..++..++++++++++...|+++.+.+
T Consensus 390 -dp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L--------~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-- 458 (606)
T KOG0547|consen 390 -DPENPDVYYHRGQMRFLLQQYEEAIADFQKAISL--------DPENAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-- 458 (606)
T ss_pred -CCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--
Confidence 4677778999999999999999999999999976 58889999999999999999999999999999866
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK--DSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~--~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
|....+|...|.++..+++|+.|+++|.+|+.+-... |.-.. ..+..-+.+. .+..+++.+|+
T Consensus 459 ------P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~----~~~~v~~~plV~Ka~l~-----~qwk~d~~~a~ 523 (606)
T KOG0547|consen 459 ------PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPRE----HLIIVNAAPLVHKALLV-----LQWKEDINQAE 523 (606)
T ss_pred ------CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhcccc----ccccccchhhhhhhHhh-----hchhhhHHHHH
Confidence 6677889999999999999999999999999875431 11111 1111112211 13558999999
Q ss_pred HHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1235 NAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1235 ~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
.+++ +|+++ .|..-.++..|| ++|+.++|+++|++++.+
T Consensus 524 ~Ll~--KA~e~---Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~l 566 (606)
T KOG0547|consen 524 NLLR--KAIEL---DPKCEQAYETLAQFELQRGKIDEAIELFEKSAQL 566 (606)
T ss_pred HHHH--HHHcc---CchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence 9999 55554 566667777777 899999999999999883
No 33
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.45 E-value=5.5e-12 Score=134.92 Aligned_cols=200 Identities=18% Similarity=0.133 Sum_probs=166.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+.....+|.-|+.+|++..|...+++||+. +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 32 ~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl----- 98 (250)
T COG3063 32 NEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL----- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc-----
Confidence 345778899999999999999999999999998 7888999999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|....+++|.|.+++.+|+|++|..+|++|+.. +..+..+.++-|+|.|..+.|+++.|..+|+++|++.
T Consensus 99 ---~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d 169 (250)
T COG3063 99 ---APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD 169 (250)
T ss_pred ---CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC
Confidence 5788899999999999999999999999999963 6667788899999999999999999999999999975
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
++.......++...+..|+|..|..+++.-..- .+ .+++++.....+- ...|+-+.|-
T Consensus 170 --------p~~~~~~l~~a~~~~~~~~y~~Ar~~~~~~~~~----~~----~~A~sL~L~iria------k~~gd~~~a~ 227 (250)
T COG3063 170 --------PQFPPALLELARLHYKAGDYAPARLYLERYQQR----GG----AQAESLLLGIRIA------KRLGDRAAAQ 227 (250)
T ss_pred --------cCCChHHHHHHHHHHhcccchHHHHHHHHHHhc----cc----ccHHHHHHHHHHH------HHhccHHHHH
Confidence 445566778999999999999999988765432 11 2333332222232 5667766665
Q ss_pred HHHH
Q 000589 1235 NAAS 1238 (1403)
Q Consensus 1235 ~~l~ 1238 (1403)
.+-.
T Consensus 228 ~Y~~ 231 (250)
T COG3063 228 RYQA 231 (250)
T ss_pred HHHH
Confidence 5444
No 34
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.45 E-value=1.2e-11 Score=136.36 Aligned_cols=203 Identities=19% Similarity=0.173 Sum_probs=162.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
....+..+..+|.+|...|++++|+..+++++.. +|....++..+|.++...|++++|+.++++++.+.
T Consensus 27 ~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--- 95 (234)
T TIGR02521 27 RNKAAKIRVQLALGYLEQGDLEVAKENLDKALEH--------DPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN--- 95 (234)
T ss_pred CCcHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---
Confidence 3456788999999999999999999999999876 35567788999999999999999999999999752
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
|.....+.++|.++...|++++|+.+|++++... ..+.....+..+|.+|...|++++|..++.+++..
T Consensus 96 -----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 164 (234)
T TIGR02521 96 -----PNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDP------LYPQPARSLENAGLCALKAGDFDKAEKYLTRALQI 164 (234)
T ss_pred -----CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc------ccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 3334578999999999999999999999998742 22344567888999999999999999999999875
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
. +++ ..++..++.++ ...|++++|...++ +++......+........+. ..|+.++|..+.+.
T Consensus 165 ~-----~~~---~~~~~~la~~~------~~~~~~~~A~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 228 (234)
T TIGR02521 165 D-----PQR---PESLLELAELY------YLRGQYKDARAYLE--RYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQ 228 (234)
T ss_pred C-----cCC---hHHHHHHHHHH------HHcCCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 2 223 34566777777 88999999999998 77776444444444333333 77889998887766
Q ss_pred HH
Q 000589 1275 SL 1276 (1403)
Q Consensus 1275 AL 1276 (1403)
+.
T Consensus 229 ~~ 230 (234)
T TIGR02521 229 LQ 230 (234)
T ss_pred HH
Confidence 54
No 35
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.41 E-value=1.1e-11 Score=163.53 Aligned_cols=225 Identities=13% Similarity=-0.003 Sum_probs=181.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+.+|..+...|++++|+..|++++.. .+. ...+..+|.++...|++++|+.+|++++.. +|
T Consensus 511 ~~L~lA~al~~~Gr~eeAi~~~rka~~~-----~p~----~~a~~~la~all~~Gd~~eA~~~l~qAL~l--------~P 573 (987)
T PRK09782 511 QHRAVAYQAYQVEDYATALAAWQKISLH-----DMS----NEDLLAAANTAQAAGNGAARDRWLQQAEQR--------GL 573 (987)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcc-----CCC----cHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CC
Confidence 3666788888999999999999987543 111 124678899999999999999999999875 24
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
.....+..++..+...|++++|+.+|++++.+ .|. ...+.++|.++..+|++++|+.+|++++.+.
T Consensus 574 ~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--------~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~----- 639 (987)
T PRK09782 574 GDNALYWWLHAQRYIPGQPELALNDLTRSLNI--------APS-ANAYVARATIYRQRHNVPAAVSDLRAALELE----- 639 (987)
T ss_pred ccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--------CCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 44555666777777889999999999999976 244 6779999999999999999999999999874
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
|....++.++|.++...|++++|+.++++++++ +|....++.+++.++ ..+|++++|+..++
T Consensus 640 ---Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l--------~P~~~~a~~nLA~al------~~lGd~~eA~~~l~- 701 (987)
T PRK09782 640 ---PNNSNYQAALGYALWDSGDIAQSREMLERAHKG--------LPDDPALIRQLAYVN------QRLDDMAATQHYAR- 701 (987)
T ss_pred ---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH-
Confidence 556678999999999999999999999999986 344456788999888 89999999999999
Q ss_pred HHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+++++. |+.+......+ ...+++.|.+.|.++..
T Consensus 702 -~Al~l~---P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 702 -LVIDDI---DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred -HHHhcC---CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 665555 44444444443 56667777777777776
No 36
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.41 E-value=2e-11 Score=138.77 Aligned_cols=277 Identities=14% Similarity=0.112 Sum_probs=205.8
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC--CHHHHHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG--DMAGAIMQQ 1063 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G--~~~eAi~~~ 1063 (1403)
..+|.+..-......-.+.+-.++.+|+++.|++.+.- ++. .++.....+-++|..+++.+| ++..|..|.
T Consensus 407 e~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv----~~~---kdnk~~saaa~nl~~l~flqggk~~~~aqqya 479 (840)
T KOG2003|consen 407 ESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKV----FEK---KDNKTASAAANNLCALRFLQGGKDFADAQQYA 479 (840)
T ss_pred HHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHH----HHh---ccchhhHHHhhhhHHHHHHhcccchhHHHHHH
Confidence 34444443333333345567788999999999987643 222 334455566788888888854 788999999
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
..|+.+ ....+.++.|-|.+.+..|++++|.+.|++|+. ++.....+++|+|..+..+|++++|
T Consensus 480 d~aln~--------dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~--------ndasc~ealfniglt~e~~~~ldea 543 (840)
T KOG2003|consen 480 DIALNI--------DRYNAAALTNKGNIAFANGDLDKAAEFYKEALN--------NDASCTEALFNIGLTAEALGNLDEA 543 (840)
T ss_pred HHHhcc--------cccCHHHhhcCCceeeecCcHHHHHHHHHHHHc--------CchHHHHHHHHhcccHHHhcCHHHH
Confidence 998876 234567888999999999999999999999984 3566788999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
+.+|.+.-.+. ...+.++..+|.+|..+.+...|++++-++..+ -+++|.+ +..|+.+|
T Consensus 544 ld~f~klh~il--------~nn~evl~qianiye~led~aqaie~~~q~~sl-----ip~dp~i---lskl~dly----- 602 (840)
T KOG2003|consen 544 LDCFLKLHAIL--------LNNAEVLVQIANIYELLEDPAQAIELLMQANSL-----IPNDPAI---LSKLADLY----- 602 (840)
T ss_pred HHHHHHHHHHH--------HhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-----CCCCHHH---HHHHHHHh-----
Confidence 99999887776 456788999999999999999999999988764 3566654 56788888
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAA 1299 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~ 1299 (1403)
...|+..+|.+++. +.++..|....+...|+ ...-.++|+.+|++|--.. |...
T Consensus 603 -dqegdksqafq~~y-----dsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliq------p~~~---------- 660 (840)
T KOG2003|consen 603 -DQEGDKSQAFQCHY-----DSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQ------PNQS---------- 660 (840)
T ss_pred -hcccchhhhhhhhh-----hcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcC------ccHH----------
Confidence 88999999999888 66666676666666666 5566788999999875311 1111
Q ss_pred HHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1300 AEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1300 ~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
+.++..+.++++.|.|+.|...|++.-.-
T Consensus 661 ----kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 661 ----KWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred ----HHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 23333344666667777776666655433
No 37
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.39 E-value=6.6e-11 Score=155.34 Aligned_cols=129 Identities=19% Similarity=0.175 Sum_probs=104.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..+..+|.++...|++++|+.+|++++++ .|....++..+|.++...|++++|+.++++++..
T Consensus 46 ~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~----- 112 (765)
T PRK10049 46 QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSG----- 112 (765)
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 444677888999999999999999999999987 3444556778999999999999999999999887
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
.|.... +..+|.++...|++++|+..+++++.+ +|....++..+|.++...+..++|+..++
T Consensus 113 ---~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~--------~P~~~~~~~~la~~l~~~~~~e~Al~~l~ 174 (765)
T PRK10049 113 ---APDKAN-LLALAYVYKRAGRHWDELRAMTQALPR--------APQTQQYPTEYVQALRNNRLSAPALGAID 174 (765)
T ss_pred ---CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCChHHHHHHHH
Confidence 355555 888999999999999999999999976 34445556678888888888887776555
No 38
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.37 E-value=3.4e-10 Score=152.30 Aligned_cols=320 Identities=15% Similarity=0.066 Sum_probs=227.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+.....+|.++...|++++|..++.+++.... .........++..+|.++...|++++|..++++++...+.. |.
T Consensus 451 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~ 526 (903)
T PRK04841 451 QAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DV 526 (903)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cc
Confidence 445555688999999999999999999987521 12222345677889999999999999999999999987754 32
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
......++.++|.+++..|++++|..++++++.+.....+...+....++..+|.++...|++++|..++.+++.+...
T Consensus 527 -~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~ 605 (903)
T PRK04841 527 -YHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSN 605 (903)
T ss_pred -hHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhc
Confidence 2344567889999999999999999999999999877654444555666778999999999999999999999998764
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.. ......++..+|.++...|++++|..++.++..+.... + .+.........+.. ......|+.+.|...
T Consensus 606 ~~---~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~-~-~~~~~~~~~~~~~~-----~~~~~~g~~~~A~~~ 675 (903)
T PRK04841 606 YQ---PQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNG-R-YHSDWIANADKVRL-----IYWQMTGDKEAAANW 675 (903)
T ss_pred cC---chHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcc-c-ccHhHhhHHHHHHH-----HHHHHCCCHHHHHHH
Confidence 32 22345677889999999999999999999998876542 1 11111111111111 112457888888777
Q ss_pred HHHHHHHHHHhhChH-HHHHHHHHH----HhCChHHHHHHHHHHHHHh-hcCCCCccccchHHHHHHHHHHHHHHHHHhh
Q 000589 1237 ASTQKAIDILKAHPD-LIHAFQAVA----AAGGSGNSGASANNSLNAA-LLGETLPRGRGFDERAARAAAEVRKKAVAKG 1310 (1403)
Q Consensus 1237 l~~qkALei~~~~p~-~~~a~~~La----~~G~~~eA~~~~ekAL~~~-~~G~~~p~~~~~~era~~a~~e~r~l~~a~G 1310 (1403)
+. +........+. ....+..++ .+|++++|..++++++... ..|... . . -......|
T Consensus 676 l~--~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~----~---~--------a~~~~~la 738 (903)
T PRK04841 676 LR--QAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMS----D---L--------NRNLILLN 738 (903)
T ss_pred HH--hcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchH----H---H--------HHHHHHHH
Confidence 65 22111111111 111122333 7899999999999999832 222110 0 0 01233456
Q ss_pred HHHhhCCCchhhhHHHHHHHHHHhcCCCCCCCCCCCCC
Q 000589 1311 LLIRPHGLPAQALPPLTQLLNIINSSGATPDASVSGAT 1348 (1403)
Q Consensus 1311 ~~~~~~g~~~eA~~~l~qaL~i~~s~g~~~~~~~~~~a 1348 (1403)
..+..+|+.++|...+++++++....|...++.+.++.
T Consensus 739 ~a~~~~G~~~~A~~~L~~Al~la~~~g~~r~f~~~g~~ 776 (903)
T PRK04841 739 QLYWQQGRKSEAQRVLLEALKLANRTGFISHFVIEGEA 776 (903)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhCccchhhhHHhccHH
Confidence 78899999999999999999999988887777655554
No 39
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=1.2e-10 Score=134.52 Aligned_cols=197 Identities=16% Similarity=0.162 Sum_probs=169.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+..-+|+.|...++.++|+.||++|+.+ +|....++..+|.=|..+.+...|+..|++|+++ .
T Consensus 331 ETCCiIaNYYSlr~eHEKAv~YFkRALkL--------Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi--------~ 394 (559)
T KOG1155|consen 331 ETCCIIANYYSLRSEHEKAVMYFKRALKL--------NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDI--------N 394 (559)
T ss_pred cceeeehhHHHHHHhHHHHHHHHHHHHhc--------CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhc--------C
Confidence 34455677888889999999999999998 5788899999999999999999999999999987 4
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
|..-.+|+.||.+|.-++-.-=|+-+|++|+.+. |.....+..||.+|...++.++|+.+|+.|+..-
T Consensus 395 p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k--------PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~---- 462 (559)
T KOG1155|consen 395 PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELK--------PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLG---- 462 (559)
T ss_pred chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC--------CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcc----
Confidence 7778899999999999999999999999999865 5667789999999999999999999999998752
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHH
Q 000589 1201 GEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASA 1272 (1403)
Q Consensus 1201 g~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ 1272 (1403)
+ .-..++..||.+| ...++..+|..++. +.++... ..+.+..+..-|+ ..+++++|..+.
T Consensus 463 -d---te~~~l~~LakLy------e~l~d~~eAa~~ye--k~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya 530 (559)
T KOG1155|consen 463 -D---TEGSALVRLAKLY------EELKDLNEAAQYYE--KYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYA 530 (559)
T ss_pred -c---cchHHHHHHHHHH------HHHHhHHHHHHHHH--HHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 1 1356788999999 88999999999998 7776542 4666777777788 789999999888
Q ss_pred HHHHH
Q 000589 1273 NNSLN 1277 (1403)
Q Consensus 1273 ekAL~ 1277 (1403)
.+++.
T Consensus 531 ~~~~~ 535 (559)
T KOG1155|consen 531 TLVLK 535 (559)
T ss_pred HHHhc
Confidence 88765
No 40
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.34 E-value=6.4e-11 Score=126.90 Aligned_cols=201 Identities=17% Similarity=0.135 Sum_probs=158.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+...+.++..||.-|+..|++..|...+++||++ +|....++..+|.+|...|+.+.|.+.|++|+.+
T Consensus 31 ~~~aa~arlqLal~YL~~gd~~~A~~nlekAL~~--------DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl---- 98 (250)
T COG3063 31 RNEAAKARLQLALGYLQQGDYAQAKKNLEKALEH--------DPSYYLAHLVRAHYYQKLGENDLADESYRKALSL---- 98 (250)
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc----
Confidence 4466788999999999999999999999999998 5788889999999999999999999999999976
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+|....+++|.|..++.+|++++|..+|++|+.. +..+..+.++.|+|.|..++|+++.|..++++++++
T Consensus 99 ----~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~------P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~ 168 (250)
T COG3063 99 ----APNNGDVLNNYGAFLCAQGRPEEAMQQFERALAD------PAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALEL 168 (250)
T ss_pred ----CCCccchhhhhhHHHHhCCChHHHHHHHHHHHhC------CCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHh
Confidence 5778889999999999999999999999999873 444566778999999999999999999999999986
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
+|....+...++... ...|++..|..++. +...-..........-..++ ..|+-..|..+-.+
T Consensus 169 --------dp~~~~~~l~~a~~~------~~~~~y~~Ar~~~~--~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~q 232 (250)
T COG3063 169 --------DPQFPPALLELARLH------YKAGDYAPARLYLE--RYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQ 232 (250)
T ss_pred --------CcCCChHHHHHHHHH------HhcccchHHHHHHH--HHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 233333445555555 77899999988777 21111122223333344444 56776665554433
No 41
>PRK12370 invasion protein regulator; Provisional
Probab=99.33 E-value=1e-10 Score=148.14 Aligned_cols=230 Identities=13% Similarity=0.042 Sum_probs=164.0
Q ss_pred HHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAE---------GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELI 1068 (1403)
Q Consensus 998 A~~l~~lG~~~~~~---------G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~ 1068 (1403)
+..+..+|.++... +++++|+..+++|+++ +|....++..+|.++...|++++|+.+|++|+.
T Consensus 295 a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l--------dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~ 366 (553)
T PRK12370 295 IAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL--------DHNNPQALGLLGLINTIHSEYIVGSLLFKQANL 366 (553)
T ss_pred HHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 45566666665533 4589999999999988 566678899999999999999999999999999
Q ss_pred HHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1069 INERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1069 i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
+ .|....+++++|.++..+|++++|+.++++++.+. +.++ ..++.++.++...|++++|+.+++
T Consensus 367 l--------~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~-----P~~~---~~~~~~~~~~~~~g~~eeA~~~~~ 430 (553)
T PRK12370 367 L--------SPISADIKYYYGWNLFMAGQLEEALQTINECLKLD-----PTRA---AAGITKLWITYYHTGIDDAIRLGD 430 (553)
T ss_pred h--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----CCCh---hhHHHHHHHHHhccCHHHHHHHHH
Confidence 8 46667789999999999999999999999999862 3333 334556667788999999999999
Q ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhh
Q 000589 1149 EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQK 1228 (1403)
Q Consensus 1149 kAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg 1228 (1403)
+++... .+.....+..+|.+|...|++++|..++++.... .+....+...|+..| ...|
T Consensus 431 ~~l~~~-------~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~--------~~~~~~~~~~l~~~~------~~~g 489 (553)
T PRK12370 431 ELRSQH-------LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ--------EITGLIAVNLLYAEY------CQNS 489 (553)
T ss_pred HHHHhc-------cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc--------cchhHHHHHHHHHHH------hccH
Confidence 988642 2344557889999999999999999998875432 344445556666665 4444
Q ss_pred cHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1229 QKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1229 ~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+.|...++ +.++.....+........+. -.|+-+.|..+ +++.+
T Consensus 490 --~~a~~~l~--~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 490 --ERALPTIR--EFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred --HHHHHHHH--HHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhc
Confidence 36666565 33333332222111122221 45666666655 55444
No 42
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.32 E-value=2.4e-11 Score=143.40 Aligned_cols=213 Identities=17% Similarity=0.181 Sum_probs=180.6
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
+..+..|+.+|..|+..|++.+|..+|.+|-.+ ++..+.++...|..|...|+.++|+..|..|-+++.
T Consensus 309 P~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~--- 377 (611)
T KOG1173|consen 309 PSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMP--- 377 (611)
T ss_pred CCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhcc---
Confidence 344778999999999999999999999999887 678889999999999999999999999999988863
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
|- -..+.-+|.-|...+++..|.++|.+|+.+. |...-.+..+|.+....+.|.+|..+|+.++...
T Consensus 378 G~-----hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~i 444 (611)
T KOG1173|consen 378 GC-----HLPSLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVI 444 (611)
T ss_pred CC-----cchHHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHh
Confidence 22 2235568999999999999999999999874 3344458999999999999999999999999766
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
+... ++.+.....+.+||.+|..++.+++|+.++++++.+ .+....++..+|.+| ..+|+++.|+
T Consensus 445 k~~~-~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l--------~~k~~~~~asig~iy------~llgnld~Ai 509 (611)
T KOG1173|consen 445 KSVL-NEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL--------SPKDASTHASIGYIY------HLLGNLDKAI 509 (611)
T ss_pred hhcc-ccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc--------CCCchhHHHHHHHHH------HHhcChHHHH
Confidence 5543 344456677899999999999999999999999986 345567778888888 8899999999
Q ss_pred HHHHHHHHHHHHhh
Q 000589 1235 NAASTQKAIDILKA 1248 (1403)
Q Consensus 1235 ~~l~~qkALei~~~ 1248 (1403)
+.+. +||-+-+.
T Consensus 510 d~fh--KaL~l~p~ 521 (611)
T KOG1173|consen 510 DHFH--KALALKPD 521 (611)
T ss_pred HHHH--HHHhcCCc
Confidence 9999 76665443
No 43
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.32 E-value=5.6e-10 Score=146.65 Aligned_cols=276 Identities=12% Similarity=0.057 Sum_probs=192.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.......+....|++++|+..+.++... .+..+.++..+|.++...|++++|+.++++++.+ .|
T Consensus 17 ~~~d~~~ia~~~g~~~~A~~~~~~~~~~--------~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--------~P 80 (765)
T PRK10049 17 QIADWLQIALWAGQDAEVITVYNRYRVH--------MQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--------EP 80 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CC
Confidence 3444567788899999999999888764 3556778999999999999999999999999987 24
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..+|.++...|++++|+.++++++.. +|.... +..+|.++...|++++|+..|++++++.
T Consensus 81 ~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~--------~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~----- 146 (765)
T PRK10049 81 QNDDYQRGLILTLADAGQYDEALVKAKQLVSG--------APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA----- 146 (765)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC-----
Confidence 55667789999999999999999999999975 344455 8899999999999999999999999965
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH---------------------------------------HHHHHHh
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY---------------------------------------DILVKQL 1200 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl---------------------------------------~i~~~~l 1200 (1403)
|....++..+|.++...+..++|+..++++. ..++..+
T Consensus 147 ---P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll 223 (765)
T PRK10049 147 ---PQTQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALE 223 (765)
T ss_pred ---CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHH
Confidence 4455666778889988888888887666322 1111111
Q ss_pred C--CCC----HHHHHHHHH-HHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHH
Q 000589 1201 G--EED----SRTKDSQNW-MKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGAS 1271 (1403)
Q Consensus 1201 g--~~~----~~t~~a~~~-La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~ 1271 (1403)
. +.+ +....+... ++. ...++++++|+..++ +++......|.....+...+ .+|++++|+.+
T Consensus 224 ~~~~~~p~~~~~~~~a~~d~l~~-------Ll~~g~~~eA~~~~~--~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~ 294 (765)
T PRK10049 224 ALWHDNPDATADYQRARIDRLGA-------LLARDRYKDVISEYQ--RLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSI 294 (765)
T ss_pred hhcccCCccchHHHHHHHHHHHH-------HHHhhhHHHHHHHHH--HhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHH
Confidence 0 011 111111111 111 246688999999988 44333222355444333222 78999999999
Q ss_pred HHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHH
Q 000589 1272 ANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1272 ~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
|++++... +..+.... ......+..+..+|++++|+..+++++...
T Consensus 295 l~~~l~~~---p~~~~~~~-------------~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~ 340 (765)
T PRK10049 295 LTELFYHP---ETIADLSD-------------EELADLFYSLLESENYPGALTVTAHTINNS 340 (765)
T ss_pred HHHHhhcC---CCCCCCCh-------------HHHHHHHHHHHhcccHHHHHHHHHHHhhcC
Confidence 99988621 11111111 011122224477799999999999888764
No 44
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.7e-10 Score=134.62 Aligned_cols=206 Identities=17% Similarity=0.122 Sum_probs=149.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..++.+|.+|...|++++|+..|.+++++ +|....+++.+|.+|..+|++++|+..|++++.+
T Consensus 61 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l----- 127 (296)
T PRK11189 61 EERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLEL----- 127 (296)
T ss_pred HhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----
Confidence 345788999999999999999999999999987 4566789999999999999999999999999987
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|....++.++|.+++..|++++|+..+++++.+ .++++.. ..+ ..++...+++++|+..|.+++...
T Consensus 128 ---~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~-----~P~~~~~-~~~---~~l~~~~~~~~~A~~~l~~~~~~~ 195 (296)
T PRK11189 128 ---DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD-----DPNDPYR-ALW---LYLAESKLDPKQAKENLKQRYEKL 195 (296)
T ss_pred ---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCHHH-HHH---HHHHHccCCHHHHHHHHHHHHhhC
Confidence 4666778999999999999999999999999975 2444521 111 223456788999999998766422
Q ss_pred HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1155 ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1155 ~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
.+.. + ..+.++...|++..+ ..++.+.+.+.... ...+...+++.+||.++ ..+|++++|+
T Consensus 196 -------~~~~---~-~~~~~~~~lg~~~~~-~~~~~~~~~~~~~~-~l~~~~~ea~~~Lg~~~------~~~g~~~~A~ 256 (296)
T PRK11189 196 -------DKEQ---W-GWNIVEFYLGKISEE-TLMERLKAGATDNT-ELAERLCETYFYLAKYY------LSLGDLDEAA 256 (296)
T ss_pred -------Cccc---c-HHHHHHHHccCCCHH-HHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHH------HHCCCHHHHH
Confidence 1111 1 134555566776544 23333332211000 01234567888888888 8999999999
Q ss_pred HHHHHHHHHHHH
Q 000589 1235 NAASTQKAIDIL 1246 (1403)
Q Consensus 1235 ~~l~~qkALei~ 1246 (1403)
.+++ ++++.-
T Consensus 257 ~~~~--~Al~~~ 266 (296)
T PRK11189 257 ALFK--LALANN 266 (296)
T ss_pred HHHH--HHHHhC
Confidence 9998 665544
No 45
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.31 E-value=1.6e-11 Score=135.72 Aligned_cols=227 Identities=16% Similarity=0.107 Sum_probs=189.5
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
..+|++|+..|.+.+|...++.++.-. .....+..|+.+|....+...|+..+.+.++.+ |..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~---------~~~dTfllLskvY~ridQP~~AL~~~~~gld~f--------P~~ 289 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQF---------PHPDTFLLLSKVYQRIDQPERALLVIGEGLDSF--------PFD 289 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcC---------CchhHHHHHHHHHHHhccHHHHHHHHhhhhhcC--------Cch
Confidence 358999999999999999999998863 234568889999999999999999999988764 777
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+..+|.++..++++++|+++|++++.+ ||....+..-+|.-|+.-++.+-|+.+|++.|.+- .
T Consensus 290 VT~l~g~ARi~eam~~~~~a~~lYk~vlk~--------~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG-----~- 355 (478)
T KOG1129|consen 290 VTYLLGQARIHEAMEQQEDALQLYKLVLKL--------HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMG-----A- 355 (478)
T ss_pred hhhhhhhHHHHHHHHhHHHHHHHHHHHHhc--------CCccceeeeeeeeccccCCChHHHHHHHHHHHHhc-----C-
Confidence 788889999999999999999999999865 56666667778888999999999999999998763 3
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
.....+.|+|.+++..++++-++..+++|+.... +.....+.+++|+.+. ...|++.-|..+++
T Consensus 356 --~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat-----~~~~aaDvWYNlg~va------V~iGD~nlA~rcfr--- 419 (478)
T KOG1129|consen 356 --QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTAT-----QPGQAADVWYNLGFVA------VTIGDFNLAKRCFR--- 419 (478)
T ss_pred --CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhcc-----CcchhhhhhhccceeE------EeccchHHHHHHHH---
Confidence 3345788999999999999999999999988653 3446677888888776 77899999988887
Q ss_pred HHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1242 AIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1242 ALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
-.+..+++...++.+|| +.|+..+|..+++.|-.
T Consensus 420 --laL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s 457 (478)
T KOG1129|consen 420 --LALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKS 457 (478)
T ss_pred --HHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence 44556778888888888 78999999999988765
No 46
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.31 E-value=7.8e-10 Score=137.48 Aligned_cols=278 Identities=16% Similarity=0.076 Sum_probs=216.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..+..++..++..|+|..+..+..-|+.... ..+..+..++.+|.+|..+|+|++|..||.+++... .+
T Consensus 270 P~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~-----~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~-----~d 339 (1018)
T KOG2002|consen 270 PVALNHLANHFYFKKDYERVWHLAEHAIKNTE-----NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD-----ND 339 (1018)
T ss_pred cHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh-----hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC-----CC
Confidence 34566689999999999999999999988742 356788999999999999999999999999998762 22
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG----KMDTALRYLQEALKK 1153 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g----~~deAl~~lekAL~l 1153 (1403)
.....+..||..|...|+++.|..+|++++... |+...++.-||.+|...+ ..+.|..++.++++.
T Consensus 340 --~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~--------p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~ 409 (1018)
T KOG2002|consen 340 --NFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL--------PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQ 409 (1018)
T ss_pred --CccccccchhHHHHHhchHHHHHHHHHHHHHhC--------cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhc
Confidence 246678899999999999999999999998753 566677888999998886 567777777777765
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +....+|..||.+|... +...++.+|..|+.++...... --.+.++++|.++ ...|++..|
T Consensus 410 ~--------~~d~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~---ip~E~LNNvaslh------f~~g~~~~A 471 (1018)
T KOG2002|consen 410 T--------PVDSEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQ---IPPEVLNNVASLH------FRLGNIEKA 471 (1018)
T ss_pred c--------cccHHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCC---CCHHHHHhHHHHH------HHhcChHHH
Confidence 4 56778899999998765 4555599999999998876544 3356789999998 889999999
Q ss_pred HHHHHHHHHHHHHh--hChH-----HHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH
Q 000589 1234 FNAASTQKAIDILK--AHPD-----LIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV 1302 (1403)
Q Consensus 1234 i~~l~~qkALei~~--~~p~-----~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~ 1302 (1403)
...+. +|+..+. .+++ .....+++| ..+++..|...|...+. .||....
T Consensus 472 ~~~f~--~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilk------ehp~YId------------ 531 (1018)
T KOG2002|consen 472 LEHFK--SALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILK------EHPGYID------------ 531 (1018)
T ss_pred HHHHH--HHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHH------HCchhHH------------
Confidence 99998 7777743 2222 245677887 67899999999999987 2343332
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
-.+-.|+..+..+...+|...+.+++++.++
T Consensus 532 --~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~ 562 (1018)
T KOG2002|consen 532 --AYLRLGCMARDKNNLYEASLLLKDALNIDSS 562 (1018)
T ss_pred --HHHHhhHHHHhccCcHHHHHHHHHHHhcccC
Confidence 1111233455668888999999999988776
No 47
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.31 E-value=1.5e-10 Score=135.17 Aligned_cols=218 Identities=13% Similarity=0.082 Sum_probs=157.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+..+.++..+.+++... ..+.+..+..++.+|.+|...|++++|+..|++++.+ .|....+|+++|.+
T Consensus 40 ~~~e~~i~~~~~~l~~~----~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~ 107 (296)
T PRK11189 40 LQQEVILARLNQILASR----DLTDEERAQLHYERGVLYDSLGLRALARNDFSQALAL--------RPDMADAYNYLGIY 107 (296)
T ss_pred hHHHHHHHHHHHHHccc----cCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHH
Confidence 35677778887777542 1234566889999999999999999999999999987 46667899999999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
+...|++++|+..|++++++ .|....++.++|.++...|++++|+..|++++++. ++++.. ..+
T Consensus 108 ~~~~g~~~~A~~~~~~Al~l--------~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~-----P~~~~~-~~~-- 171 (296)
T PRK11189 108 LTQAGNFDAAYEAFDSVLEL--------DPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDD-----PNDPYR-ALW-- 171 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCCHHH-HHH--
Confidence 99999999999999999986 35566789999999999999999999999999864 333321 111
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----
Q 000589 1172 LAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---- 1247 (1403)
Q Consensus 1172 LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---- 1247 (1403)
..++...+++++|+..+++++... .++... .+..+ ...|+...+. .+. .+.+.+.
T Consensus 172 -~~l~~~~~~~~~A~~~l~~~~~~~----~~~~~~-------~~~~~------~~lg~~~~~~-~~~--~~~~~~~~~~~ 230 (296)
T PRK11189 172 -LYLAESKLDPKQAKENLKQRYEKL----DKEQWG-------WNIVE------FYLGKISEET-LME--RLKAGATDNTE 230 (296)
T ss_pred -HHHHHccCCHHHHHHHHHHHHhhC----CccccH-------HHHHH------HHccCCCHHH-HHH--HHHhcCCCcHH
Confidence 223456789999999998765321 111111 11111 2344443331 222 2222222
Q ss_pred hChHHHHHHHHHH----HhCChHHHHHHHHHHHHH
Q 000589 1248 AHPDLIHAFQAVA----AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1248 ~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~ 1278 (1403)
..|....++.++| ..|++++|+.+|++|+..
T Consensus 231 l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~ 265 (296)
T PRK11189 231 LAERLCETYFYLAKYYLSLGDLDEAAALFKLALAN 265 (296)
T ss_pred HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 2345667888888 889999999999999973
No 48
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.29 E-value=1.7e-11 Score=135.43 Aligned_cols=216 Identities=18% Similarity=0.172 Sum_probs=182.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
....+..++++|....+...|+..|.+.++. .|.....+..+|.++..++++++|.++|+.+++.
T Consensus 255 ~~dTfllLskvY~ridQP~~AL~~~~~gld~--------fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~------- 319 (478)
T KOG1129|consen 255 HPDTFLLLSKVYQRIDQPERALLVIGEGLDS--------FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKL------- 319 (478)
T ss_pred chhHHHHHHHHHHHhccHHHHHHHHhhhhhc--------CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhc-------
Confidence 3567788999999999999999999999887 4566677888999999999999999999999886
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
|+..+.+...+|.-|+..++++-|+.||++.+.+ |-..|. .++|+|.|+...++++-++..|++|+....
T Consensus 320 -~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqm-----G~~spe---Lf~NigLCC~yaqQ~D~~L~sf~RAlstat- 389 (478)
T KOG1129|consen 320 -HPINVEAIACIAVGYFYDNNPEMALRYYRRILQM-----GAQSPE---LFCNIGLCCLYAQQIDLVLPSFQRALSTAT- 389 (478)
T ss_pred -CCccceeeeeeeeccccCCChHHHHHHHHHHHHh-----cCCChH---HHhhHHHHHHhhcchhhhHHHHHHHHhhcc-
Confidence 5666777778899999999999999999999976 555555 489999999999999999999999998763
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+....+.+|+|||.+....||+..|...|+-|+. .+++..+++++|+.+. ...|+.++|..+
T Consensus 390 ----~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--------~d~~h~ealnNLavL~------~r~G~i~~Arsl 451 (478)
T KOG1129|consen 390 ----QPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--------SDAQHGEALNNLAVLA------ARSGDILGARSL 451 (478)
T ss_pred ----CcchhhhhhhccceeEEeccchHHHHHHHHHHhc--------cCcchHHHHHhHHHHH------hhcCchHHHHHH
Confidence 2346788999999999999999999999998875 4677789999999987 788999999998
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+. ..-...|+......+++
T Consensus 452 l~-----~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 452 LN-----AAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred HH-----HhhhhCcccccccccee
Confidence 88 33334566665555554
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.27 E-value=2.1e-11 Score=141.22 Aligned_cols=267 Identities=18% Similarity=0.194 Sum_probs=94.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
+.+|.+++..|++++|++.+.+.+.... .+.....+..+|.+...++++++|+..|++.+... +..
T Consensus 12 l~~A~~~~~~~~~~~Al~~L~~~~~~~~------~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~--------~~~ 77 (280)
T PF13429_consen 12 LRLARLLYQRGDYEKALEVLKKAAQKIA------PPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD--------KAN 77 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccc------ccccccccccccccccccccccccccccccccccc--------ccc
Confidence 3569999999999999999977655421 23444677789999999999999999999998762 334
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+.+++.+ ...+++++|+.+++++.+.. .++ ..+..+..++...++++++...++++.... .
T Consensus 78 ~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~------~ 141 (280)
T PF13429_consen 78 PQDYERLIQL-LQDGDPEEALKLAEKAYERD------GDP---RYLLSALQLYYRLGDYDEAEELLEKLEELP------A 141 (280)
T ss_dssp --------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T-------
T ss_pred cccccccccc-cccccccccccccccccccc------ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhcc------C
Confidence 5567777777 78999999999998876531 122 335556778899999999999999977422 2
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
.+.....+..+|.++...|++++|+..+++++++ .|+++... ..++.++ ...|+++++...+. .
T Consensus 142 ~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~-----~P~~~~~~---~~l~~~l------i~~~~~~~~~~~l~--~ 205 (280)
T PF13429_consen 142 APDSARFWLALAEIYEQLGDPDKALRDYRKALEL-----DPDDPDAR---NALAWLL------IDMGDYDEAREALK--R 205 (280)
T ss_dssp --T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH------TT-HHHH---HHHHHHH------CTTCHHHHHHHHHH--H
T ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCHHHH---HHHHHHH------HHCCChHHHHHHHH--H
Confidence 2456678899999999999999999999999986 24555544 4455555 67888888777776 4
Q ss_pred HHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCch
Q 000589 1242 AIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPA 1320 (1403)
Q Consensus 1242 ALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~ 1320 (1403)
.....+.+|.....+.... ..|++++|+.+|++++... +.+|. .....+.++...|+.+
T Consensus 206 ~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~---p~d~~-----------------~~~~~a~~l~~~g~~~ 265 (280)
T PF13429_consen 206 LLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN---PDDPL-----------------WLLAYADALEQAGRKD 265 (280)
T ss_dssp HHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS---TT-HH-----------------HHHHHHHHHT------
T ss_pred HHHHCcCHHHHHHHHHHHhcccccccccccccccccccc---ccccc-----------------cccccccccccccccc
Confidence 4344455565544444333 7799999999999998732 23332 3334566778889999
Q ss_pred hhhHHHHHHHHHHh
Q 000589 1321 QALPPLTQLLNIIN 1334 (1403)
Q Consensus 1321 eA~~~l~qaL~i~~ 1334 (1403)
+|..++++++..+.
T Consensus 266 ~A~~~~~~~~~~l~ 279 (280)
T PF13429_consen 266 EALRLRRQALRLLR 279 (280)
T ss_dssp --------------
T ss_pred cccccccccccccC
Confidence 99999999987653
No 50
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.8e-10 Score=136.02 Aligned_cols=209 Identities=12% Similarity=0.094 Sum_probs=175.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+|..+..++.+|..|+..|++.+|..|+-||..+ ++....+|..+|..+...|..++|+..|..|-.+...
T Consensus 308 yP~~a~sW~aVg~YYl~i~k~seARry~SKat~l--------D~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G- 378 (611)
T KOG1173|consen 308 YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTL--------DPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG- 378 (611)
T ss_pred CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhc--------CccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-
Confidence 6777788999999999999999999999999887 4677889999999999999999999999999887633
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
-.-| +..+|.-|...+++.-|.++|.+|+.++ |.....++.+|.+.+..+.|.+|..+|+.++..
T Consensus 379 --~hlP-----~LYlgmey~~t~n~kLAe~Ff~~A~ai~--------P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ 443 (611)
T KOG1173|consen 379 --CHLP-----SLYLGMEYMRTNNLKLAEKFFKQALAIA--------PSDPLVLHELGVVAYTYEEYPEALKYFQKALEV 443 (611)
T ss_pred --Ccch-----HHHHHHHHHHhccHHHHHHHHHHHHhcC--------CCcchhhhhhhheeehHhhhHHHHHHHHHHHHH
Confidence 2233 5678999999999999999999999987 556678999999999999999999999999966
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANN 1274 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ek 1274 (1403)
.+..+ ...+...-...+||.++ ..++.+++|+..++ ++|..-+..+....+...+- .+|+++.|+.+|.+
T Consensus 444 ik~~~-~e~~~w~p~~~NLGH~~------Rkl~~~~eAI~~~q--~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhK 514 (611)
T KOG1173|consen 444 IKSVL-NEKIFWEPTLNNLGHAY------RKLNKYEEAIDYYQ--KALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHK 514 (611)
T ss_pred hhhcc-ccccchhHHHHhHHHHH------HHHhhHHHHHHHHH--HHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHH
Confidence 55543 34444556778999988 89999999999999 77777666655554444443 78999999999999
Q ss_pred HHH
Q 000589 1275 SLN 1277 (1403)
Q Consensus 1275 AL~ 1277 (1403)
||.
T Consensus 515 aL~ 517 (611)
T KOG1173|consen 515 ALA 517 (611)
T ss_pred HHh
Confidence 997
No 51
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.26 E-value=4.6e-10 Score=126.34 Aligned_cols=179 Identities=20% Similarity=0.190 Sum_probs=149.9
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...+..++.+|..++..|++++|+..|++++.. .+.++....++..+|.+|..+|++++|+..|++++...
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~-----~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~---- 100 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESR-----YPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH---- 100 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-----CCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC----
Confidence 445788999999999999999999999999887 35566677889999999999999999999999999874
Q ss_pred CCCChhHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHHHHhhcCCCCHHHHH--------------HHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGL--------NQTELALRHMSRALLLLSLSSGPDHPDVAA--------------TFINVAM 1132 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~--------G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~--------------~~~nLA~ 1132 (1403)
++++....+++.+|.++... |++++|+..|++++... ++++.... ....+|.
T Consensus 101 -p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a~ 174 (235)
T TIGR03302 101 -PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVAR 174 (235)
T ss_pred -cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45666667889999999876 88999999999998753 33332222 2247889
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1133 MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
+|...|++.+|+..|+++++.. ++++....+++.+|.+|...|++++|..+++...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~ 230 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAYLKLGLKDLAQDAAAVLG 230 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 9999999999999999999865 4456778899999999999999999999887654
No 52
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.25 E-value=2.6e-09 Score=119.11 Aligned_cols=297 Identities=13% Similarity=0.096 Sum_probs=209.0
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
.....++...+++|..++..|++..|+..|..|++. +|....+++..|.+|..+|+-.-|+.-+.+++.+
T Consensus 32 ~~~~advekhlElGk~lla~~Q~sDALt~yHaAve~--------dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel-- 101 (504)
T KOG0624|consen 32 TASPADVEKHLELGKELLARGQLSDALTHYHAAVEG--------DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL-- 101 (504)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHcC--------CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--
Confidence 344567788899999999999999999999999987 7888999999999999999999999999999987
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH------------HHHHHHHHHHcCC
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT------------FINVAMMYQDIGK 1139 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~------------~~nLA~iy~~~g~ 1139 (1403)
.|+...+....|.++..+|++++|+.-|..++..- +.......+ +.....-+...|+
T Consensus 102 ------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~-----~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD 170 (504)
T KOG0624|consen 102 ------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHE-----PSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGD 170 (504)
T ss_pred ------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcC-----CCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCc
Confidence 58888999999999999999999999999998642 111112222 2233334556789
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
+..|+++..+.|++. +..+..+...|.+|...|+...|+.-++.+-.+.. +.-+..+.++.++
T Consensus 171 ~~~ai~~i~~llEi~--------~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~--------DnTe~~ykis~L~- 233 (504)
T KOG0624|consen 171 CQNAIEMITHLLEIQ--------PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ--------DNTEGHYKISQLL- 233 (504)
T ss_pred hhhHHHHHHHHHhcC--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc--------cchHHHHHHHHHH-
Confidence 999999999999876 67788899999999999999999999998876532 2334556666666
Q ss_pred HHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-------------HhCChHHHHHHHHHHHHHhhc-----
Q 000589 1220 RELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-------------AAGGSGNSGASANNSLNAALL----- 1281 (1403)
Q Consensus 1220 r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-------------~~G~~~eA~~~~ekAL~~~~~----- 1281 (1403)
...|+.+.++...+ +.|.+-++|......|..|- ..+++.++++..++.++...-
T Consensus 234 -----Y~vgd~~~sL~~iR--ECLKldpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir 306 (504)
T KOG0624|consen 234 -----YTVGDAENSLKEIR--ECLKLDPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIR 306 (504)
T ss_pred -----HhhhhHHHHHHHHH--HHHccCcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCccccee
Confidence 67777777777776 55554444433333332221 557777788888877771110
Q ss_pred ----CCCCccccchHHHHHHHHHHHH----------HHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1282 ----GETLPRGRGFDERAARAAAEVR----------KKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1282 ----G~~~p~~~~~~era~~a~~e~r----------~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
.....+.+. ++....|+++.. +..-.|+..|.....|+.|+..|+.|++.-.
T Consensus 307 ~~~~r~~c~C~~~-d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~ 372 (504)
T KOG0624|consen 307 YNGFRVLCTCYRE-DEQFGEAIQQCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNE 372 (504)
T ss_pred eeeeheeeecccc-cCCHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCc
Confidence 000001111 111222222221 1122234455666788888988888887644
No 53
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=99.19 E-value=1e-09 Score=123.57 Aligned_cols=177 Identities=15% Similarity=0.047 Sum_probs=147.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.+..+..++.+|..++..|++++|+..+++++... ++++....++..+|.++...|++++|+..|++++...
T Consensus 29 ~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~--- 100 (235)
T TIGR03302 29 EEWPAEELYEEAKEALDSGDYTEAIKYFEALESRY-----PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH--- 100 (235)
T ss_pred ccCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-----CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC---
Confidence 45567889999999999999999999999998863 4556667789999999999999999999999999763
Q ss_pred cCCCCHHHHHHHHHHHHHHHHc--------CCHHHHHHHHHHHHHHHHHHhCCCcHHHH--------------HHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDI--------GKMDTALRYLQEALKKNERLLGEEHIQTA--------------VCYHALA 1173 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~--------g~~deAl~~lekAL~l~~~~~G~~~~~~a--------------~~~~~LA 1173 (1403)
++++....+++.+|.++... |++++|+..|++++... +++.... .....+|
T Consensus 101 --p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----p~~~~~~~a~~~~~~~~~~~~~~~~~~a 173 (235)
T TIGR03302 101 --PNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRY-----PNSEYAPDAKKRMDYLRNRLAGKELYVA 173 (235)
T ss_pred --cCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHC-----CCChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666677899999999876 88999999999998764 2222211 1234789
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+|..+|++.+|+..++++++.+ ++++....++..++.++ ...|++++|..++.
T Consensus 174 ~~~~~~g~~~~A~~~~~~al~~~-----p~~~~~~~a~~~l~~~~------~~lg~~~~A~~~~~ 227 (235)
T TIGR03302 174 RFYLKRGAYVAAINRFETVVENY-----PDTPATEEALARLVEAY------LKLGLKDLAQDAAA 227 (235)
T ss_pred HHHHHcCChHHHHHHHHHHHHHC-----CCCcchHHHHHHHHHHH------HHcCCHHHHHHHHH
Confidence 99999999999999999998863 44677788899999988 89999999999877
No 54
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.18 E-value=1.5e-08 Score=136.40 Aligned_cols=305 Identities=12% Similarity=-0.043 Sum_probs=214.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH-REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~-p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
....+.+++..|++++|..++.++...........+ .....+...+|.++...|++++|..++++++.... ..+..
T Consensus 412 ~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~---~~~~~ 488 (903)
T PRK04841 412 VLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELP---LTWYY 488 (903)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC---CccHH
Confidence 355677888999999999999998776433211111 22455667789999999999999999999987521 11222
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....++..+|.++...|++++|+.++++++...... |.. .....++.++|.++...|++++|..++++++.+.....+
T Consensus 489 ~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~-g~~-~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~ 566 (903)
T PRK04841 489 SRIVATSVLGEVHHCKGELARALAMMQQTEQMARQH-DVY-HYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHL 566 (903)
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhh-cch-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhcc
Confidence 345677889999999999999999999999987753 332 334567899999999999999999999999999877654
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
...+....++..+|.++...|++++|..++++++.+.... + ......++..++.++ ...|++++|...+.
T Consensus 567 ~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~-~--~~~~~~~~~~la~~~------~~~G~~~~A~~~l~- 636 (903)
T PRK04841 567 EQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNY-Q--PQQQLQCLAMLAKIS------LARGDLDNARRYLN- 636 (903)
T ss_pred ccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhcc-C--chHHHHHHHHHHHHH------HHcCCHHHHHHHHH-
Confidence 4445455667789999999999999999999999986632 2 223344555666666 88999999999888
Q ss_pred HHHHHHHhhCh---HHHHHH-----HHHHHhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhH
Q 000589 1240 QKAIDILKAHP---DLIHAF-----QAVAAAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGL 1311 (1403)
Q Consensus 1240 qkALei~~~~p---~~~~a~-----~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~ 1311 (1403)
+++.+..... ...... ..+...|+.+.|..++....... ...+... .......+.
T Consensus 637 -~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~---~~~~~~~-------------~~~~~~~a~ 699 (903)
T PRK04841 637 -RLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPE---FANNHFL-------------QGQWRNIAR 699 (903)
T ss_pred -HHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCC---CccchhH-------------HHHHHHHHH
Confidence 7766654321 111111 11125678888877765543210 0000000 012233455
Q ss_pred HHhhCCCchhhhHHHHHHHHHHhcCC
Q 000589 1312 LIRPHGLPAQALPPLTQLLNIINSSG 1337 (1403)
Q Consensus 1312 ~~~~~g~~~eA~~~l~qaL~i~~s~g 1337 (1403)
++...|++++|...|++++......+
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g 725 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLR 725 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhC
Confidence 67788999999999999988765533
No 55
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=4.6e-10 Score=128.31 Aligned_cols=299 Identities=12% Similarity=0.071 Sum_probs=225.2
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
.|-+........+|......|..++.+.+|.+|+..|..|++++ |+.+..|.+.+.+|+..|+|++|...++
T Consensus 36 ~~~~s~~~~~~~~Ae~~k~~gn~~yk~k~Y~nal~~yt~Ai~~~--------pd~a~yy~nRAa~~m~~~~~~~a~~dar 107 (486)
T KOG0550|consen 36 SPEYSFSQEAAQQAEEAKEEGNAFYKQKTYGNALKNYTFAIDMC--------PDNASYYSNRAATLMMLGRFEEALGDAR 107 (486)
T ss_pred CccccccchHHHHHHHHHhhcchHHHHhhHHHHHHHHHHHHHhC--------ccchhhhchhHHHHHHHHhHhhcccchh
Confidence 34444455556678899999999999999999999999999983 5558899999999999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH--------HHHHhhcCC--CCHHHHHHHHHHHHHH
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL--------LLLSLSSGP--DHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL--------~l~~~~~g~--d~p~~a~~~~nLA~iy 1134 (1403)
+.+++ .+.....+...+.++...++..+|...++..- .....+... ..|....+...-+.++
T Consensus 108 ~~~r~--------kd~~~k~~~r~~~c~~a~~~~i~A~~~~~~~~~~~~anal~~~~~~~~s~s~~pac~~a~~lka~cl 179 (486)
T KOG0550|consen 108 QSVRL--------KDGFSKGQLREGQCHLALSDLIEAEEKLKSKQAYKAANALPTLEKLAPSHSREPACFKAKLLKAECL 179 (486)
T ss_pred hheec--------CCCccccccchhhhhhhhHHHHHHHHHhhhhhhhHHhhhhhhhhcccccccCCchhhHHHHhhhhhh
Confidence 99887 24445577778888888888888876665221 111111111 2255566666778999
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
...|++++|...--..+++. ...+.+++.-|.++...++.+.|+.+|++++. ++++|.....++...
T Consensus 180 ~~~~~~~~a~~ea~~ilkld--------~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~-----ldpdh~~sk~~~~~~ 246 (486)
T KOG0550|consen 180 AFLGDYDEAQSEAIDILKLD--------ATNAEALYVRGLCLYYNDNADKAINHFQQALR-----LDPDHQKSKSASMMP 246 (486)
T ss_pred hhcccchhHHHHHHHHHhcc--------cchhHHHHhcccccccccchHHHHHHHhhhhc-----cChhhhhHHhHhhhH
Confidence 99999999998776666653 45567788889999999999999999999998 478888888777766
Q ss_pred HHHH---HHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCc
Q 000589 1215 KTFK---MRELQMNVQKQKGQAFNAASTQKAIDILKAHP-DLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLP 1286 (1403)
Q Consensus 1215 a~l~---~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p-~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p 1286 (1403)
-.+. .+++.....|++..|.+.|. .+|.+.+.+. ..+..|.+.+ ..|+..+|+.-.+.|+....
T Consensus 247 k~le~~k~~gN~~fk~G~y~~A~E~Yt--eal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~------ 318 (486)
T KOG0550|consen 247 KKLEVKKERGNDAFKNGNYRKAYECYT--EALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDS------ 318 (486)
T ss_pred HHHHHHHhhhhhHhhccchhHHHHHHH--HhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCH------
Confidence 5544 34888999999999999999 8888777544 3456777777 78999999999999887221
Q ss_pred cccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1287 RGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1287 ~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
...+..+.++.++...+++++|++.|+++++.-.
T Consensus 319 --------------syikall~ra~c~l~le~~e~AV~d~~~a~q~~~ 352 (486)
T KOG0550|consen 319 --------------SYIKALLRRANCHLALEKWEEAVEDYEKAMQLEK 352 (486)
T ss_pred --------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 0112233345566666777777777777766543
No 56
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.17 E-value=6.7e-09 Score=124.17 Aligned_cols=304 Identities=15% Similarity=0.107 Sum_probs=188.8
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000589 984 LQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063 (1403)
Q Consensus 984 l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~ 1063 (1403)
.....+............+..+..+...|++++|..++++++.. +|....++.. +..+...|++..+....
T Consensus 29 ~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~-~~~~~~~~~~~~~~~~~ 99 (355)
T cd05804 29 AAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--------YPRDLLALKL-HLGAFGLGDFSGMRDHV 99 (355)
T ss_pred HHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHH-hHHHHHhcccccCchhH
Confidence 33334444445555566677788888889999999888888876 2333344443 66666666666666655
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
.+++.. ....+|.....+..+|.++..+|++++|+..+++++.+ .|.....+..+|.+|...|++++|
T Consensus 100 ~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~~~~la~i~~~~g~~~eA 167 (355)
T cd05804 100 ARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWAVHAVAHVLEMQGRFKEG 167 (355)
T ss_pred HHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHHHHHHHHHHHHcCCHHHH
Confidence 555543 34567777888888999999999999999999999875 244466788899999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
+.++++++..... ........+..+|.++...|++++|+.++++++.. .+..............++ .
T Consensus 168 ~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~~~~l~----~ 234 (355)
T cd05804 168 IAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAP-----SAESDPALDLLDAASLLW----R 234 (355)
T ss_pred HHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc-----ccCCChHHHHhhHHHHHH----H
Confidence 9999998876521 12233456778999999999999999999888432 111112222111111111 1
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHhhC-hH----HHHHHHHHH--HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHH
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILKAH-PD----LIHAFQAVA--AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAA 1296 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~~~-p~----~~~a~~~La--~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~ 1296 (1403)
....|....+... . ......... +. .......++ ..|+..+|...++.............. .
T Consensus 235 ~~~~g~~~~~~~w-~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~----~---- 303 (355)
T cd05804 235 LELAGHVDVGDRW-E--DLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQ----P---- 303 (355)
T ss_pred HHhcCCCChHHHH-H--HHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhh----h----
Confidence 1333433322222 1 111111111 11 111122222 678888888888877663322100000 0
Q ss_pred HHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1297 RAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1297 ~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
...-.+...++..+..+|++++|+..+.+++.+...
T Consensus 304 ---~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~ 339 (355)
T cd05804 304 ---ARDVGLPLAEALYAFAEGNYATALELLGPVRDDLAR 339 (355)
T ss_pred ---HHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 011124455567888999999999999999998865
No 57
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.12 E-value=1.8e-08 Score=123.13 Aligned_cols=284 Identities=13% Similarity=0.009 Sum_probs=170.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+......|.+.+..|+++.|.+.+.++.+. .|.-...+...|.++..+|++++|..++.++.+.. ++
T Consensus 84 ~~~~~~~glla~~~g~~~~A~~~l~~~~~~--------~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~ 150 (409)
T TIGR00540 84 AQKQTEEALLKLAEGDYAKAEKLIAKNADH--------AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GN 150 (409)
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----Cc
Confidence 445555666777777777777777665554 12223344556667777777777777777765431 11
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH----
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK---- 1153 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l---- 1153 (1403)
+. ..+....+.++...|+++.|+..+++.+.. .++++ .++..++.+|...|++++|++.+.+.++.
T Consensus 151 ~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-----~P~~~---~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~ 220 (409)
T TIGR00540 151 DN--ILVEIARTRILLAQNELHAARHGVDKLLEM-----APRHK---EVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFD 220 (409)
T ss_pred Cc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----CCCCH---HHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCC
Confidence 11 112333466667777777777776666653 13333 44666677777777777776666555532
Q ss_pred ---H------------------------HHH---hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1154 ---N------------------------ERL---LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1154 ---~------------------------~~~---~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
. ... .....+.....+..+|..+...|++++|+..++++++.. ++
T Consensus 221 ~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd 295 (409)
T TIGR00540 221 DEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GD 295 (409)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CC
Confidence 0 000 000111245678889999999999999999999998852 22
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh--HHHHHHHHHH-HhCChHHHHHHHHHHHHHhh
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHP--DLIHAFQAVA-AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p--~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
+.... +..+..+. ....++...++..++ ++++..+++| ....++..+. +.|++++|..+|+++.....
T Consensus 296 ~~~~~--~~~l~~~~-----~l~~~~~~~~~~~~e--~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~ 366 (409)
T TIGR00540 296 DRAIS--LPLCLPIP-----RLKPEDNEKLEKLIE--KQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKE 366 (409)
T ss_pred cccch--hHHHHHhh-----hcCCCChHHHHHHHH--HHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhc
Confidence 22111 00111110 123466677777777 6666655666 4444555555 88999999999995433111
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhcCC
Q 000589 1281 LGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINSSG 1337 (1403)
Q Consensus 1281 ~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s~g 1337 (1403)
+|... .....|.++...|+.++|..+|++++..+.+-+
T Consensus 367 ----~p~~~---------------~~~~La~ll~~~g~~~~A~~~~~~~l~~~~~~~ 404 (409)
T TIGR00540 367 ----QLDAN---------------DLAMAADAFDQAGDKAEAAAMRQDSLGLMLAIQ 404 (409)
T ss_pred ----CCCHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccc
Confidence 12111 122446678889999999999999999988743
No 58
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.12 E-value=1.1e-09 Score=130.38 Aligned_cols=206 Identities=14% Similarity=0.108 Sum_probs=165.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
+..|..++..|++.+|.-+|+.|+.- +|..+.++..||.+....++-..|+..+++|+++ .|..
T Consensus 289 f~eG~~lm~nG~L~~A~LafEAAVkq--------dP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~N 352 (579)
T KOG1125|consen 289 FKEGCNLMKNGDLSEAALAFEAAVKQ--------DPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTN 352 (579)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHhh--------ChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCcc
Confidence 56799999999999999999999886 7999999999999999999999999999999998 5888
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----Hhh------cCC----C------------------CH--HHHHH
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLL-----SLS------SGP----D------------------HP--DVAAT 1126 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~-----~~~------~g~----d------------------~p--~~a~~ 1126 (1403)
..++..||..|...|.-.+|+.++.+-+..- ... .+. . +| ....+
T Consensus 353 leaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~Dpdv 432 (579)
T KOG1125|consen 353 LEALMALAVSYTNEGLQNQALKMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDV 432 (579)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhH
Confidence 8999999999999999999999988876431 000 000 0 11 22345
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR 1206 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~ 1206 (1403)
+.-||.+|...|+|+.|+.+|+.||... |....+|+.||-.+..-.+..+|+..|++|+++ .|.
T Consensus 433 Q~~LGVLy~ls~efdraiDcf~~AL~v~--------Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--------qP~ 496 (579)
T KOG1125|consen 433 QSGLGVLYNLSGEFDRAVDCFEAALQVK--------PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--------QPG 496 (579)
T ss_pred HhhhHHHHhcchHHHHHHHHHHHHHhcC--------CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--------CCC
Confidence 6678888888888888888888888743 667778888888888888888888888888876 466
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1207 TKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1207 t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
...+.++||..+ ..+|.|.+|..++- .||.+.+
T Consensus 497 yVR~RyNlgIS~------mNlG~ykEA~~hlL--~AL~mq~ 529 (579)
T KOG1125|consen 497 YVRVRYNLGISC------MNLGAYKEAVKHLL--EALSMQR 529 (579)
T ss_pred eeeeehhhhhhh------hhhhhHHHHHHHHH--HHHHhhh
Confidence 777788888877 77788888888777 6666654
No 59
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.12 E-value=3.6e-10 Score=130.92 Aligned_cols=233 Identities=18% Similarity=0.206 Sum_probs=98.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...+..+|.+....+++++|+..|.+.+.. .+.....+..++.+ ...+++++|+.+++++.+..
T Consensus 43 ~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~--------~~~~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~------ 107 (280)
T PF13429_consen 43 DPEYWRLLADLAWSLGDYDEAIEAYEKLLAS--------DKANPQDYERLIQL-LQDGDPEEALKLAEKAYERD------ 107 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccc--------cccccccccccccc-cccccccccccccccccccc------
Confidence 3456667899999999999999999999876 23344556677777 78999999999998876542
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.++ ..+..+..++...++++++...+.++... ...+.....+..+|.++...|++++|+.+|++|+++.
T Consensus 108 ~~~---~~l~~~l~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-- 176 (280)
T PF13429_consen 108 GDP---RYLLSALQLYYRLGDYDEAEELLEKLEEL------PAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELD-- 176 (280)
T ss_dssp -------------H-HHHTT-HHHHHHHHHHHHH-------T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH---
T ss_pred ccc---chhhHHHHHHHHHhHHHHHHHHHHHHHhc------cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--
Confidence 122 33455667789999999999999997742 2234567779999999999999999999999999976
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|....+...++.++...|+++++.+.++...... +.++.. +..++..+ ...|++++|+..
T Consensus 177 ------P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-----~~~~~~---~~~la~~~------~~lg~~~~Al~~ 236 (280)
T PF13429_consen 177 ------PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-----PDDPDL---WDALAAAY------LQLGRYEEALEY 236 (280)
T ss_dssp ------TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH------HTSCCH---CHHHHHHH------HHHT-HHHHHHH
T ss_pred ------CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-----cCHHHH---HHHHHHHh------cccccccccccc
Confidence 5556677889999999999999887777665542 223333 34566666 788999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
++ +++...+.+|.....+...- ..|+.++|..++++++.
T Consensus 237 ~~--~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 237 LE--KALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HH--HHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred cc--cccccccccccccccccccccccccccccccccccccc
Confidence 99 55444444444443333333 88999999999999876
No 60
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.12 E-value=1.5e-08 Score=123.40 Aligned_cols=273 Identities=14% Similarity=0.038 Sum_probs=181.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+...+..|...+..|+|+.|+..+.++-.. .++|.. .+...+.+...+|+++.|..++.++.+..
T Consensus 82 ~~~~~~~~~gl~a~~eGd~~~A~k~l~~~~~~------~~~p~l--~~llaA~aA~~~g~~~~A~~~l~~A~~~~----- 148 (398)
T PRK10747 82 RRARKQTEQALLKLAEGDYQQVEKLMTRNADH------AEQPVV--NYLLAAEAAQQRGDEARANQHLERAAELA----- 148 (398)
T ss_pred HHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc------ccchHH--HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----
Confidence 34666777888888888998888666654332 122322 23444566688899999999988887642
Q ss_pred CCChhH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDT-AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1076 ~d~p~~-~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
|+. .......+.++...|++++|+..++++++. .|....++..++.+|...|++++|+..+.+..+..
T Consensus 149 ---~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~--------~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~ 217 (398)
T PRK10747 149 ---DNDQLPVEITRVRIQLARNENHAARHGVDKLLEV--------APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAH 217 (398)
T ss_pred ---CcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcC
Confidence 221 122234478888889999999888888764 23334557778888888899988886666554210
Q ss_pred -------------------HHH---------------hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1155 -------------------ERL---------------LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1155 -------------------~~~---------------~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
... .....+....+...+|..+...|+.++|...++++++.
T Consensus 218 ~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~----- 292 (398)
T PRK10747 218 VGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR----- 292 (398)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-----
Confidence 000 00112334556778899999999999999999988762
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHH---HHHH-HhCChHHHHHHHHHHH
Q 000589 1201 GEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAF---QAVA-AAGGSGNSGASANNSL 1276 (1403)
Q Consensus 1201 g~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~---~~La-~~G~~~eA~~~~ekAL 1276 (1403)
+.++.....+.. ...++.++++...+ ...+.+|+....+ ..++ ..+++++|..+|++++
T Consensus 293 -~~~~~l~~l~~~-----------l~~~~~~~al~~~e-----~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al 355 (398)
T PRK10747 293 -QYDERLVLLIPR-----------LKTNNPEQLEKVLR-----QQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAAL 355 (398)
T ss_pred -CCCHHHHHHHhh-----------ccCCChHHHHHHHH-----HHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 234433222211 23488888888887 4455555555444 4444 8899999999999999
Q ss_pred HHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1277 NAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1277 ~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
... |.... ....+.++..+|+.++|..+|++++.+...
T Consensus 356 ~~~------P~~~~---------------~~~La~~~~~~g~~~~A~~~~~~~l~~~~~ 393 (398)
T PRK10747 356 KQR------PDAYD---------------YAWLADALDRLHKPEEAAAMRRDGLMLTLQ 393 (398)
T ss_pred hcC------CCHHH---------------HHHHHHHHHHcCCHHHHHHHHHHHHhhhcc
Confidence 732 22111 122344678889999999999999988754
No 61
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.11 E-value=8.3e-08 Score=107.29 Aligned_cols=252 Identities=12% Similarity=0.073 Sum_probs=190.7
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
++...+..+.+|.+|...|..+.|+.+.+-.+.. .+-.......++..||.-|+..|-++.|+..|...++.-
T Consensus 65 d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s----pdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~--- 137 (389)
T COG2956 65 DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES----PDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEG--- 137 (389)
T ss_pred CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC----CCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcch---
Confidence 4455677888999999999999999988766553 111233456788999999999999999999998876642
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.....++..|-.+|....+|++|++..++...+-.. +....++..|+.||..+....+.+.|+.++.+|+..
T Consensus 138 -----efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa 209 (389)
T COG2956 138 -----EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRVEIAQFYCELAQQALASSDVDRARELLKKALQA 209 (389)
T ss_pred -----hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh
Confidence 223457788999999999999999998887765322 245678899999999999999999999999999985
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
. +....+-..+|.++...|+|..|++.++.+++- ++..+.++...|...| ..+|+.++.
T Consensus 210 ~--------~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-------n~~yl~evl~~L~~~Y------~~lg~~~~~ 268 (389)
T COG2956 210 D--------KKCVRASIILGRVELAKGDYQKAVEALERVLEQ-------NPEYLSEVLEMLYECY------AQLGKPAEG 268 (389)
T ss_pred C--------ccceehhhhhhHHHHhccchHHHHHHHHHHHHh-------ChHHHHHHHHHHHHHH------HHhCCHHHH
Confidence 4 556667778999999999999999999887763 4556667788888888 899999999
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccc
Q 000589 1234 FNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRG 1290 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~ 1290 (1403)
+..+. ++++.... ++...++..+- ...-.+.|..++.+-++ .||.++.
T Consensus 269 ~~fL~--~~~~~~~g-~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~------r~Pt~~g 317 (389)
T COG2956 269 LNFLR--RAMETNTG-ADAELMLADLIELQEGIDAAQAYLTRQLR------RKPTMRG 317 (389)
T ss_pred HHHHH--HHHHccCC-ccHHHHHHHHHHHhhChHHHHHHHHHHHh------hCCcHHH
Confidence 98888 55555433 33333444443 45556667666666554 4565555
No 62
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.10 E-value=2.4e-08 Score=124.04 Aligned_cols=311 Identities=13% Similarity=0.098 Sum_probs=181.4
Q ss_pred HHHHhhhhhhhhcCCchhH-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH
Q 000589 979 SDILNLQPVVKHSVPICSE-AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA 1057 (1403)
Q Consensus 979 ~dI~~l~pvvK~~~~~~~~-A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~ 1057 (1403)
.++....++...+-...+. ...|+.+|.+|-++|+.+++......|-.+ +|.....+..++....++|++.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--------~p~d~e~W~~ladls~~~~~i~ 224 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--------NPKDYELWKRLADLSEQLGNIN 224 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--------CCCChHHHHHHHHHHHhcccHH
Confidence 3444444444444444443 345566666666666666666665555444 1222245556666666667777
Q ss_pred HHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHH
Q 000589 1058 GAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD-VAATFINVAMMYQD 1136 (1403)
Q Consensus 1058 eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~-~a~~~~nLA~iy~~ 1136 (1403)
+|.-+|.+||.. .|.....++..+.+|.++|++..|+..|.+++.+.. +.+-. .-..-...+..+..
T Consensus 225 qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~ 292 (895)
T KOG2076|consen 225 QARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDP----PVDIERIEDLIRRVAHYFIT 292 (895)
T ss_pred HHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCC----chhHHHHHHHHHHHHHHHHH
Confidence 777777777765 355566677777777777777777777777776531 11111 11222233444555
Q ss_pred cCCHHHHHHHHHHHHHHHHHH-----------------------------hC----------------------------
Q 000589 1137 IGKMDTALRYLQEALKKNERL-----------------------------LG---------------------------- 1159 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~-----------------------------~G---------------------------- 1159 (1403)
.++-+.|++.++.++...... .+
T Consensus 293 ~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~ 372 (895)
T KOG2076|consen 293 HNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGK 372 (895)
T ss_pred hhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCC
Confidence 555555555555444310000 00
Q ss_pred -----------------------------------CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1160 -----------------------------------EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1160 -----------------------------------~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.........+..++.+|...|++.+|+.++..+... ..
T Consensus 373 ~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~-------~~ 445 (895)
T KOG2076|consen 373 ELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR-------EG 445 (895)
T ss_pred CCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC-------cc
Confidence 001123456788999999999999999998876552 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCC
Q 000589 1205 SRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGE 1283 (1403)
Q Consensus 1205 ~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~ 1283 (1403)
......+..+|.+| ..++.+++|+..|. +++...+.+-+....+..|- ++|+.++|.+.+++..
T Consensus 446 ~~~~~vw~~~a~c~------~~l~e~e~A~e~y~--kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~------- 510 (895)
T KOG2076|consen 446 YQNAFVWYKLARCY------MELGEYEEAIEFYE--KVLILAPDNLDARITLASLYQQLGNHEKALETLEQII------- 510 (895)
T ss_pred ccchhhhHHHHHHH------HHHhhHHHHHHHHH--HHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc-------
Confidence 12245566677777 89999999999999 55555544444443333333 7899998887776654
Q ss_pred CCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1284 TLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1284 ~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.|+.+... + .+....+.+...+...+...|+.++=+....+++..+-.
T Consensus 511 -~~D~~~~e--~-~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~~Lv~~~~~ 558 (895)
T KOG2076|consen 511 -NPDGRNAE--A-CAWEPERRILAHRCDILFQVGKREEFINTASTLVDDFLK 558 (895)
T ss_pred -CCCccchh--h-ccccHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHH
Confidence 22222211 0 011122345556667788889988877766666666554
No 63
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.07 E-value=6.5e-08 Score=108.12 Aligned_cols=232 Identities=13% Similarity=0.119 Sum_probs=185.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
.|.-++...+.++|+++|.+.++. ++....+...||.+|...|+.+.|+...+..+... +........
T Consensus 41 ~GlNfLLs~Q~dKAvdlF~e~l~~--------d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp----dlT~~qr~l 108 (389)
T COG2956 41 KGLNFLLSNQPDKAVDLFLEMLQE--------DPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP----DLTFEQRLL 108 (389)
T ss_pred hHHHHHhhcCcchHHHHHHHHHhc--------CchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC----CCchHHHHH
Confidence 566677778899999999998875 67889999999999999999999999887765431 111234567
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
++..||.-|...|-++.|+..|....+. ......++..|-.+|+...+|++|++..++...+..+ +...
T Consensus 109 Al~qL~~Dym~aGl~DRAE~~f~~L~de--------~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q---~~~~ 177 (389)
T COG2956 109 ALQQLGRDYMAAGLLDRAEDIFNQLVDE--------GEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQ---TYRV 177 (389)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcc--------hhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCc---cchh
Confidence 8889999999999999999999887642 1223467889999999999999999988877665422 2356
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAI 1243 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkAL 1243 (1403)
..+..|..||..+....+++.|..++++|++. ++....+...+|.+. ...|+|.+|+..++
T Consensus 178 eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa--------~~~cvRAsi~lG~v~------~~~g~y~~AV~~~e----- 238 (389)
T COG2956 178 EIAQFYCELAQQALASSDVDRARELLKKALQA--------DKKCVRASIILGRVE------LAKGDYQKAVEALE----- 238 (389)
T ss_pred HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhh--------CccceehhhhhhHHH------HhccchHHHHHHHH-----
Confidence 78899999999999999999999999999985 566677777888887 89999999999998
Q ss_pred HHHhhChHHH-HHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1244 DILKAHPDLI-HAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1244 ei~~~~p~~~-~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
.+...+|+.. .+...|. ..|+.++....+.++.+
T Consensus 239 ~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~ 277 (389)
T COG2956 239 RVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAME 277 (389)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 6666666544 2222222 77999999999998887
No 64
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=99.06 E-value=7.9e-08 Score=114.95 Aligned_cols=249 Identities=12% Similarity=0.044 Sum_probs=159.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
+..++..|++..+...+.+++.. ..+.+|....++..+|.++..+|++++|+..+++++.+ .|....+
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~--------~p~~~~~ 150 (355)
T cd05804 83 HLGAFGLGDFSGMRDHVARVLPL----WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALEL--------NPDDAWA 150 (355)
T ss_pred hHHHHHhcccccCchhHHHHHhc----cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCcHH
Confidence 55666667666666666666554 34567888889999999999999999999999999997 3555778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
+..+|.+++..|++++|+.++.+++..... +.......+..+|.++...|++++|+.+|++++... +....
T Consensus 151 ~~~la~i~~~~g~~~eA~~~l~~~l~~~~~----~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~-----~~~~~ 221 (355)
T cd05804 151 VHAVAHVLEMQGRFKEGIAFMESWRDTWDC----SSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPS-----AESDP 221 (355)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHhhhhccCC----CcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccc-----cCCCh
Confidence 899999999999999999999999976422 122335667899999999999999999999986432 11111
Q ss_pred HHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 000589 1165 TAVC--YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKA 1242 (1403)
Q Consensus 1165 ~a~~--~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkA 1242 (1403)
.... ...+...+...|....+..+ +.+....... .+.+. ........+.+ ....|+.++|...+. ..
T Consensus 222 ~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~-~~~~~-~~~~~~~~a~~------~~~~~~~~~a~~~L~--~l 290 (355)
T cd05804 222 ALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWH-FPDHG-LAFNDLHAALA------LAGAGDKDALDKLLA--AL 290 (355)
T ss_pred HHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhh-cCccc-chHHHHHHHHH------HhcCCCHHHHHHHHH--HH
Confidence 1111 11333444445554444443 2222221111 01111 11111122222 367888888888886 32
Q ss_pred HHHHhh---C---hHHH--HHHHHHH--HhCChHHHHHHHHHHHH-HhhcCCCC
Q 000589 1243 IDILKA---H---PDLI--HAFQAVA--AAGGSGNSGASANNSLN-AALLGETL 1285 (1403)
Q Consensus 1243 Lei~~~---~---p~~~--~a~~~La--~~G~~~eA~~~~ekAL~-~~~~G~~~ 1285 (1403)
...... . .... .....++ .+|++.+|...+..++. ...+|..|
T Consensus 291 ~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a~~~ggs~ 344 (355)
T cd05804 291 KGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDLARIGGSH 344 (355)
T ss_pred HHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcH
Confidence 222222 1 1112 2223333 88999999999999999 44555544
No 65
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=99.05 E-value=4.5e-08 Score=110.16 Aligned_cols=282 Identities=12% Similarity=0.063 Sum_probs=204.8
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~k 1065 (1403)
.++.+++........|-.+..+...+|.|++++.+---.++.+... .+......++.+|+..+....++.+++.|..-
T Consensus 31 ~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~ 108 (518)
T KOG1941|consen 31 KVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--EDSDFLLEAYLNLARSNEKLCEFHKTISYCKT 108 (518)
T ss_pred HHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 3444444444455556667778888999999888777666665543 22345678999999999999999999988877
Q ss_pred HHHHHHHhcCCCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1066 ELIINERCLGLDH-PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTAL 1144 (1403)
Q Consensus 1066 AL~i~er~lg~d~-p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl 1144 (1403)
.+.+- |.+. ..-.+....||..+..++.+++++++|+.|+.+.... .|...-..++..||..+..+.++++|+
T Consensus 109 ~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~--~D~~LElqvcv~Lgslf~~l~D~~Kal 182 (518)
T KOG1941|consen 109 CLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNN--DDAMLELQVCVSLGSLFAQLKDYEKAL 182 (518)
T ss_pred HhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhcc--CCceeeeehhhhHHHHHHHHHhhhHHh
Confidence 66542 2221 1223566679999999999999999999999987664 333445677899999999999999999
Q ss_pred HHHHHHHHHHHHHh-CCC-cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHH
Q 000589 1145 RYLQEALKKNERLL-GEE-HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMREL 1222 (1403)
Q Consensus 1145 ~~lekAL~l~~~~~-G~~-~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~ 1222 (1403)
-+..+|+++...+. +.. .-....+++.++..|..+|..-.|.++.++|.++.-.. .+.+....++..++.+|
T Consensus 183 ~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~--Gdra~~arc~~~~aDIy---- 256 (518)
T KOG1941|consen 183 FFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQH--GDRALQARCLLCFADIY---- 256 (518)
T ss_pred hhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHh--CChHHHHHHHHHHHHHH----
Confidence 99999999987764 222 23456778999999999999999999999999987653 34566677788888888
Q ss_pred HHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH---------HhCChHHHHHHHHHHHH-HhhcCCCC
Q 000589 1223 QMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA---------AAGGSGNSGASANNSLN-AALLGETL 1285 (1403)
Q Consensus 1223 ~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La---------~~G~~~eA~~~~ekAL~-~~~~G~~~ 1285 (1403)
...|+.+.|..-|+ +|+.+.. +.-....++...| ..+..=+|++.-.+.++ ....|-.|
T Consensus 257 --R~~gd~e~af~rYe--~Am~~m~~~gdrmgqv~al~g~Akc~~~~r~~~k~~~Crale~n~r~levA~~IG~K~ 328 (518)
T KOG1941|consen 257 --RSRGDLERAFRRYE--QAMGTMASLGDRMGQVEALDGAAKCLETLRLQNKICNCRALEFNTRLLEVASSIGAKL 328 (518)
T ss_pred --HhcccHhHHHHHHH--HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHhhhhH
Confidence 88999999888777 7777665 2333334444444 12223457777777777 44444443
No 66
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.04 E-value=1.5e-08 Score=117.50 Aligned_cols=209 Identities=18% Similarity=0.121 Sum_probs=152.0
Q ss_pred HHHHHHHHHHHHHHHh------cCC---CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000589 1016 EAYTLFSEAFSILQQV------TGP---MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYG 1086 (1403)
Q Consensus 1016 eA~~~l~eAL~l~~~i------~g~---~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~ 1086 (1403)
+|.+++.+|-..++.. ++. +....+..|...|.+|...+++++|...|.+|..+.++. .+....+.+|.
T Consensus 2 ~a~~l~~~Aek~lk~~~~~~~~f~~~~~~~e~Aa~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~ 79 (282)
T PF14938_consen 2 EAEELIKEAEKKLKKSSGFFSFFGSKKPDYEEAADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYE 79 (282)
T ss_dssp HHHHHHHHHHHHCS---TCCCHH--SCHHHHHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHH
T ss_pred CHHHHHHHHHHHhccccchhhhcCCCCCCHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHH
Confidence 4556666665554432 222 233456778888899999999999999999999998873 34456788888
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI-GKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1087 nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~-g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
+.+.+|... ++++|+.+|++|+.++... ......+.++.++|.+|... |++++|+++|++|+++++... .....
T Consensus 80 ~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~--~~~~a 154 (282)
T PF14938_consen 80 EAANCYKKG-DPDEAIECYEKAIEIYREA--GRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEG--SPHSA 154 (282)
T ss_dssp HHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT---HHHH
T ss_pred HHHHHHHhh-CHHHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC--ChhhH
Confidence 888888777 9999999999999998764 33456789999999999999 999999999999999987642 34556
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..++..+|.++...|+|++|++.|++........ ..........+.....++ ...|+.-.|...+.
T Consensus 155 ~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~-~l~~~~~~~~~l~a~l~~------L~~~D~v~A~~~~~ 220 (282)
T PF14938_consen 155 AECLLKAADLYARLGRYEEAIEIYEEVAKKCLEN-NLLKYSAKEYFLKAILCH------LAMGDYVAARKALE 220 (282)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCH-CTTGHHHHHHHHHHHHHH------HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcc-cccchhHHHHHHHHHHHH------HHcCCHHHHHHHHH
Confidence 7788999999999999999999999887643211 011223444444455555 77889888887777
No 67
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=99.03 E-value=1.7e-08 Score=117.18 Aligned_cols=190 Identities=15% Similarity=0.111 Sum_probs=147.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..|...|..|...+++++|.+.|.+|..++.+. .+....+.+|...+.+|... ++++|+.+|++|+.++... .+
T Consensus 35 a~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~--~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~--G~ 109 (282)
T PF14938_consen 35 ADLYEKAANCFKLAKDWEKAAEAYEKAADCYEKL--GDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREA--GR 109 (282)
T ss_dssp HHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHC--T-
T ss_pred HHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhc--Cc
Confidence 5666678999999999999999999999998873 33456788888888888766 9999999999999999764 33
Q ss_pred ChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGL-NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~-G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
....+.++.++|.+|... |++++|+++|++|++++... ........++.++|.++..+|+|++|+..|++.......
T Consensus 110 ~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e--~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~ 187 (282)
T PF14938_consen 110 FSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQE--GSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLE 187 (282)
T ss_dssp HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHT--T-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC--CChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhc
Confidence 456688999999999999 99999999999999998875 233456788899999999999999999999998875321
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.. -........+...+.++...||+-.|...+++...+
T Consensus 188 ~~-l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 188 NN-LLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HC-TTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred cc-ccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 10 012234455678888999999999998888776543
No 68
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.02 E-value=2.8e-07 Score=103.23 Aligned_cols=299 Identities=16% Similarity=0.115 Sum_probs=207.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
++..-.+++..|.+|+..|+-.-|+.-+.+++++ .|+...+....|.++..+|++++|+.-|.+.+...-..
T Consensus 68 dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--------KpDF~~ARiQRg~vllK~Gele~A~~DF~~vl~~~~s~ 139 (504)
T KOG0624|consen 68 DPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--------KPDFMAARIQRGVVLLKQGELEQAEADFDQVLQHEPSN 139 (504)
T ss_pred CchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--------CccHHHHHHHhchhhhhcccHHHHHHHHHHHHhcCCCc
Confidence 3444667889999999999999999999999998 68889999999999999999999999999988742100
Q ss_pred cCC--------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1074 LGL--------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1074 lg~--------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
+. ...+..+.+.....-++..|++..|+.+..+.+++ .|..+..+..-+.+|...|+...|+.
T Consensus 140 -~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi--------~~Wda~l~~~Rakc~i~~~e~k~AI~ 210 (504)
T KOG0624|consen 140 -GLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEI--------QPWDASLRQARAKCYIAEGEPKKAIH 210 (504)
T ss_pred -chhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhc--------CcchhHHHHHHHHHHHhcCcHHHHHH
Confidence 00 00011123334455567789999999999999976 37778888899999999999999999
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH---HH
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR---EL 1222 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r---~~ 1222 (1403)
-++.+-++. .+....++.++.+++..|+.+.++.-.++++.+ .++|......|..|..+-.. ..
T Consensus 211 Dlk~askLs--------~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl-----dpdHK~Cf~~YKklkKv~K~les~e 277 (504)
T KOG0624|consen 211 DLKQASKLS--------QDNTEGHYKISQLLYTVGDAENSLKEIRECLKL-----DPDHKLCFPFYKKLKKVVKSLESAE 277 (504)
T ss_pred HHHHHHhcc--------ccchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc-----CcchhhHHHHHHHHHHHHHHHHHHH
Confidence 999888765 344567889999999999999999999888874 45554443333333222110 11
Q ss_pred HH--------------------------------------HHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----
Q 000589 1223 QM--------------------------------------NVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA---- 1260 (1403)
Q Consensus 1223 ~~--------------------------------------~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La---- 1260 (1403)
.. ..-+++.+|++... +++...|+.+.++...|
T Consensus 278 ~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~-----evL~~d~~dv~~l~dRAeA~l 352 (504)
T KOG0624|consen 278 QAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK-----EVLDIDPDDVQVLCDRAEAYL 352 (504)
T ss_pred HHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHH-----HHHhcCchHHHHHHHHHHHHh
Confidence 11 23344555555444 55555666666666666
Q ss_pred HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH--HHHHHHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1261 AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV--RKKAVAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1261 ~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~--r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
....|+.|+.-|++|++ ..+.|..++.-.++|.++..+. |....+.|. .+...-.+-...|+.+..-
T Consensus 353 ~dE~YD~AI~dye~A~e---~n~sn~~~reGle~Akrlkkqs~kRDYYKILGV--kRnAsKqEI~KAYRKlAqk 421 (504)
T KOG0624|consen 353 GDEMYDDAIHDYEKALE---LNESNTRAREGLERAKRLKKQSGKRDYYKILGV--KRNASKQEITKAYRKLAQK 421 (504)
T ss_pred hhHHHHHHHHHHHHHHh---cCcccHHHHHHHHHHHHHHHHhccchHHHHhhh--cccccHHHHHHHHHHHHHh
Confidence 44679999999999987 3345666666667777754333 444444433 3333444445556655443
No 69
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.01 E-value=3.8e-08 Score=112.45 Aligned_cols=266 Identities=15% Similarity=0.103 Sum_probs=204.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+..+|.+++..|++.+|+..|+++..+ +|.....+-..|.++...|+++.-..+-...+.+.
T Consensus 232 vhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--------dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~------- 296 (564)
T KOG1174|consen 232 EHLMMALGKCLYYNGDYFQAEDIFSSTLCA--------NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV------- 296 (564)
T ss_pred HHHHHHHhhhhhhhcCchHHHHHHHHHhhC--------ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-------
Confidence 556778899999999999999999998877 78888999999999999999988777666665552
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
..+..-+.--+..++...++..|+.+-++++.. .+.....+..-|..+..+++.++|+-.|+.|..+.
T Consensus 297 -~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--- 364 (564)
T KOG1174|consen 297 -KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA--- 364 (564)
T ss_pred -hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------CcccchHHHhccHHHHhccchHHHHHHHHHHHhcc---
Confidence 123334555677788889999999999999975 34455678889999999999999999999999876
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHHHHHHHHHHhhcHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK-TFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La-~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|....+|..|-.+|...|.+.+|....+.+++.+. ..+.++..+| .+.. ..-.-.++|..+
T Consensus 365 -----p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~~--------~sA~~LtL~g~~V~~-----~dp~~rEKAKkf 426 (564)
T KOG1174|consen 365 -----PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLFQ--------NSARSLTLFGTLVLF-----PDPRMREKAKKF 426 (564)
T ss_pred -----hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHhh--------cchhhhhhhcceeec-----cCchhHHHHHHH
Confidence 66788999999999999999999999999988764 2344444453 2220 222234567777
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ ++ ++..|+...+...+| ..|.++.++.+++++|.... + -.+....|..
T Consensus 427 ~e--k~---L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~--D-------------------~~LH~~Lgd~ 480 (564)
T KOG1174|consen 427 AE--KS---LKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFP--D-------------------VNLHNHLGDI 480 (564)
T ss_pred HH--hh---hccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhcc--c-------------------cHHHHHHHHH
Confidence 77 44 445566666666555 77999999999999987211 0 1255556778
Q ss_pred HhhCCCchhhhHHHHHHHHHHh
Q 000589 1313 IRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
...+..+++|+..|..||.+-.
T Consensus 481 ~~A~Ne~Q~am~~y~~ALr~dP 502 (564)
T KOG1174|consen 481 MRAQNEPQKAMEYYYKALRQDP 502 (564)
T ss_pred HHHhhhHHHHHHHHHHHHhcCc
Confidence 8888999999999999988744
No 70
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.99 E-value=4.8e-09 Score=125.01 Aligned_cols=184 Identities=14% Similarity=0.109 Sum_probs=157.1
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE- 1071 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e- 1071 (1403)
.++..++++..||.+....++=..|+..+++|+++ +|....++..||..|...|.-.+|+.++.+=|...-
T Consensus 314 qdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~L--------dP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~p~ 385 (579)
T KOG1125|consen 314 QDPQHAEAWQKLGITQAENENEQNAISALRRCLEL--------DPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNKPK 385 (579)
T ss_pred hChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhc--------CCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcc
Confidence 34566888999999999999999999999999998 788889999999999999999999999988655320
Q ss_pred ----Hh------cC----CCC------------------h--hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1072 ----RC------LG----LDH------------------P--DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1072 ----r~------lg----~d~------------------p--~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
.. .+ ..+ + ....++..||.+|+..|+|++|+.+|+.||..
T Consensus 386 y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v------ 459 (579)
T KOG1125|consen 386 YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQV------ 459 (579)
T ss_pred chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhc------
Confidence 00 00 001 1 12346778999999999999999999999964
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
.|.....|+.||-.+..-.+..+|+..|++|+++. |.+.++.++||..|+.+|.|++|..||-.|+.+.+
T Consensus 460 --~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq--------P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~ 529 (579)
T KOG1125|consen 460 --KPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ--------PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQR 529 (579)
T ss_pred --CCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC--------CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhh
Confidence 58888999999999999999999999999999986 77889999999999999999999999999999987
Q ss_pred HHh
Q 000589 1198 KQL 1200 (1403)
Q Consensus 1198 ~~l 1200 (1403)
+..
T Consensus 530 ks~ 532 (579)
T KOG1125|consen 530 KSR 532 (579)
T ss_pred ccc
Confidence 643
No 71
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.96 E-value=1.3e-07 Score=112.28 Aligned_cols=290 Identities=17% Similarity=0.115 Sum_probs=194.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+-..|...+..|+|+.|+.+|.+|+.+ +|.....|.+...+|..+|+|++|+.--.+++++ .
T Consensus 3 ~e~k~kgnaa~s~~d~~~ai~~~t~ai~l--------~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--------~ 66 (539)
T KOG0548|consen 3 VELKEKGNAAFSSGDFETAIRLFTEAIML--------SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--------N 66 (539)
T ss_pred hHHHHHHHhhcccccHHHHHHHHHHHHcc--------CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--------C
Confidence 44566789999999999999999999998 4445678899999999999999999999999887 5
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC--------------------
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG-------------------- 1138 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g-------------------- 1138 (1403)
|.+...|..+|..++.+|+|++|+..|.+.|+. .|.....+..|+.++....
T Consensus 67 p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~GL~~--------d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~ 138 (539)
T KOG0548|consen 67 PDWAKGYSRKGAALFGLGDYEEAILAYSEGLEK--------DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPL 138 (539)
T ss_pred CchhhHHHHhHHHHHhcccHHHHHHHHHHHhhc--------CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChh
Confidence 899999999999999999999999999999975 3444445555555542210
Q ss_pred -CHHHHHHHHHHHHHHHHH----------------H----hC-------------------C------------CcH---
Q 000589 1139 -KMDTALRYLQEALKKNER----------------L----LG-------------------E------------EHI--- 1163 (1403)
Q Consensus 1139 -~~deAl~~lekAL~l~~~----------------~----~G-------------------~------------~~~--- 1163 (1403)
++-.....|...++...+ . .+ + +..
T Consensus 139 t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~ 218 (539)
T KOG0548|consen 139 TNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEER 218 (539)
T ss_pred hhhhhccHHHHHHHHHhhcCcHhhhcccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHH
Confidence 011111112222211110 0 00 0 000
Q ss_pred ---HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1164 ---QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1164 ---~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
..+.-...||.......+|..|+++|..++++. . ...-+.+.+.+| ...+.+.+.+....
T Consensus 219 ~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~-~--------~it~~~n~aA~~------~e~~~~~~c~~~c~-- 281 (539)
T KOG0548|consen 219 RVKEKAHKEKELGNAAYKKKDFETAIQHYAKALELA-T--------DITYLNNIAAVY------LERGKYAECIELCE-- 281 (539)
T ss_pred HHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh-h--------hhHHHHHHHHHH------HhccHHHHhhcchH--
Confidence 134456789999999999999999999999974 2 223344555555 56666666655555
Q ss_pred HHHHHHh----hChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHH----------
Q 000589 1241 KAIDILK----AHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEV---------- 1302 (1403)
Q Consensus 1241 kALei~~----~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~---------- 1302 (1403)
++++... ..-.+..++..+| ..++++.|+.+|++++..... |........++.+..+.
T Consensus 282 ~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt----~~~ls~lk~~Ek~~k~~e~~a~~~pe~ 357 (539)
T KOG0548|consen 282 KAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRT----PDLLSKLKEAEKALKEAERKAYINPEK 357 (539)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcC----HHHHHHHHHHHHHHHHHHHHHhhChhH
Confidence 4444433 1222444555555 668999999999999872221 33332222222222221
Q ss_pred HHHHHHhhHHHhhCCCchhhhHHHHHHHHHH
Q 000589 1303 RKKAVAKGLLIRPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1303 r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
-.-.+..|..+...|+|..|+..|.+|+..-
T Consensus 358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~ 388 (539)
T KOG0548|consen 358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRD 388 (539)
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcC
Confidence 1222333888899999999999999988765
No 72
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.95 E-value=4.4e-09 Score=97.20 Aligned_cols=78 Identities=33% Similarity=0.585 Sum_probs=72.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
||.++.++.++|.+|..+|+|++|+.+|++|+++ .+..|++++.++.++.++|.+|..+|++++|+++++++++++++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 7899999999999999999999999999999999 77778888899999999999999999999999999999998763
No 73
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=98.93 E-value=4.8e-09 Score=96.95 Aligned_cols=78 Identities=40% Similarity=0.598 Sum_probs=71.9
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
||.++.+|.++|.+|..+|+|++|+.+|++++.+ ...+|++++.++.++.++|.++..+|++++|+.++++|+++.++
T Consensus 1 H~~~a~~~~~la~~~~~~~~~~~A~~~~~~al~~-~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 1 HPDTANAYNNLARVYRELGRYDEALDYYEKALDI-EEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp -HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-HHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 6889999999999999999999999999999999 66678888999999999999999999999999999999998753
No 74
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.92 E-value=1.8e-07 Score=121.89 Aligned_cols=166 Identities=12% Similarity=0.027 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...+..+.+...+|+++.|++.|++++.. .|........++.++...|++++|+.++++++.-
T Consensus 33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~--------~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p------- 97 (822)
T PRK14574 33 MADTQYDSLIIRARAGDTAPVLDYLQEESKA--------GPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS------- 97 (822)
T ss_pred chhHHHHHHHHHHhCCCHHHHHHHHHHHHhh--------CccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-------
Confidence 3557788999999999999999999999987 3333222228888888999999999999999821
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.+.....+..+|.+|..+|+|++|+++|++++.. +|....++..|+.+|...++.++|+..+++++...
T Consensus 98 -~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-- 166 (822)
T PRK14574 98 -MNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD-- 166 (822)
T ss_pred -CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--
Confidence 2333445556688999999999999999999975 24445556788999999999999999999988754
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+. ...+..++.++..+++..+|++.++++++.
T Consensus 167 ------p~-~~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 167 ------PT-VQNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred ------cc-hHHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 22 222344566666677887799999999875
No 75
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.90 E-value=1.3e-08 Score=105.96 Aligned_cols=125 Identities=15% Similarity=0.130 Sum_probs=105.1
Q ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCC
Q 000589 1018 YTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQ 1097 (1403)
Q Consensus 1018 ~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~ 1097 (1403)
..+|++++++ +|.. +..+|.++...|++++|+.+|++++.+ .|....++.++|.++...|+
T Consensus 13 ~~~~~~al~~--------~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~ 73 (144)
T PRK15359 13 EDILKQLLSV--------DPET---VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKE 73 (144)
T ss_pred HHHHHHHHHc--------CHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhh
Confidence 5678888887 4553 557899999999999999999999887 47778899999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000589 1098 TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1098 ~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
+++|+..|.+++.+ .|....+++++|.++..+|++++|+..|++|+++. |.....+.+++.+..
T Consensus 74 ~~~A~~~y~~Al~l--------~p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~ 137 (144)
T PRK15359 74 YTTAINFYGHALML--------DASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQI 137 (144)
T ss_pred HHHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHH
Confidence 99999999999975 46667789999999999999999999999999875 344445556665544
No 76
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=98.88 E-value=3.9e-07 Score=102.75 Aligned_cols=266 Identities=12% Similarity=0.081 Sum_probs=198.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+......|.-++...++++|+....+.+...... ......|..+..+...+|.|.+++.+.--.+..+... .|
T Consensus 6 ~k~q~~~g~~Ly~s~~~~~al~~w~~~L~~l~~~-----~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~--~d 78 (518)
T KOG1941|consen 6 TKKQIEKGLQLYQSNQTEKALQVWTKVLEKLSDL-----MGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTAREL--ED 78 (518)
T ss_pred hHHHHHHHHhHhcCchHHHHHHHHHHHHHHHHHH-----HHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHH--HH
Confidence 3345566778888999999999999988876543 3456678888999999999999998887777766554 34
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH-PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~-p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
......+|.||+..+...-++.+++.|-+..+.+- |.+. ..-......+|..+..++.+++++++|+.|+++...
T Consensus 79 s~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lp----gt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~ 154 (518)
T KOG1941|consen 79 SDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLP----GTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHN 154 (518)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCC----CCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhc
Confidence 45667899999999999999999999888777542 2111 112244556899999999999999999999998755
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh-CCCCHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL-GEEDSRT-KDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l-g~~~~~t-~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
. .+......++..||.+|....|+++|+-+..+|+++....- ++.+... ..+++.++..+ ..+|....|.
T Consensus 155 ~--~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaVal------R~~G~LgdA~ 226 (518)
T KOG1941|consen 155 N--DDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVAL------RLLGRLGDAM 226 (518)
T ss_pred c--CCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHH------HHhcccccHH
Confidence 3 23344567889999999999999999999999999876542 3323222 23344444444 8899999999
Q ss_pred HHHHHHHHHHHHh---hChHHHHHHHHHH----HhCChHHHHHHHHHHHH-HhhcCCC
Q 000589 1235 NAASTQKAIDILK---AHPDLIHAFQAVA----AAGGSGNSGASANNSLN-AALLGET 1284 (1403)
Q Consensus 1235 ~~l~~qkALei~~---~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~-~~~~G~~ 1284 (1403)
++.+ +|.++.- +.+..+..+..+| ..|+.+.|..-|++|.. .+.+|..
T Consensus 227 e~C~--Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am~~m~~~gdr 282 (518)
T KOG1941|consen 227 ECCE--EAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAMGTMASLGDR 282 (518)
T ss_pred HHHH--HHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHHHHHhhhhhh
Confidence 9988 7766654 4455555555566 67999999999999998 4444444
No 77
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=98.87 E-value=1.7e-07 Score=114.30 Aligned_cols=234 Identities=11% Similarity=0.006 Sum_probs=165.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+...+.....+|+++.|..+|.++.+.. ++. .. ......+.++...|++++|+..+++++..
T Consensus 118 ~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~-----~~~-~~-~~~l~~a~l~l~~g~~~~Al~~l~~~~~~-------- 182 (398)
T PRK10747 118 VVNYLLAAEAAQQRGDEARANQHLERAAELA-----DND-QL-PVEITRVRIQLARNENHAARHGVDKLLEV-------- 182 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-----Ccc-hH-HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--------
Confidence 3345556777799999999999999997751 111 11 22234489999999999999999998776
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------Hh---------------hcCCCCHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL-------------------SL---------------SSGPDHPDV 1123 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~-------------------~~---------------~~g~d~p~~ 1123 (1403)
.|....++..++.+|...|+|++|+..+.+..... .. .+....+..
T Consensus 183 ~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~ 262 (398)
T PRK10747 183 APRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQ 262 (398)
T ss_pred CCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCC
Confidence 35555678888999999999999997666555210 00 001122334
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
..+...+|..+...|+.++|...++++++. +.++..... ++. ...+++++++..+++.++.
T Consensus 263 ~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~------~~~~~l~~l---~~~--l~~~~~~~al~~~e~~lk~-------- 323 (398)
T PRK10747 263 VALQVAMAEHLIECDDHDTAQQIILDGLKR------QYDERLVLL---IPR--LKTNNPEQLEKVLRQQIKQ-------- 323 (398)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhc------CCCHHHHHH---Hhh--ccCCChHHHHHHHHHHHhh--------
Confidence 556778899999999999999999999872 223322222 222 2348999999988887653
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
+|+....+..+|.++ ..++++++|...++ ++++. .|+... +..|+ .+|+.++|..+|++++.
T Consensus 324 ~P~~~~l~l~lgrl~------~~~~~~~~A~~~le--~al~~---~P~~~~-~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 324 HGDTPLLWSTLGQLL------MKHGEWQEASLAFR--AALKQ---RPDAYD-YAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCCCHHHHHHHHHHH------HHCCCHHHHHHHHH--HHHhc---CCCHHH-HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 455556667777777 88999999999999 55544 444332 12233 88999999999999987
No 78
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.86 E-value=1e-07 Score=121.90 Aligned_cols=162 Identities=12% Similarity=0.058 Sum_probs=140.5
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1006 KVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1006 ~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
.+.-..+....+.+.+-+++.+... .+....++.+||.+...+|.+++|+.+++.++++ .|+...+.
T Consensus 57 ~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~ 123 (694)
T PRK15179 57 QVLERHAAVHKPAAALPELLDYVRR-----YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAF 123 (694)
T ss_pred HHHHHhhhhcchHhhHHHHHHHHHh-----ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHH
Confidence 4445556666666667777766544 4566889999999999999999999999999998 48888999
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
.+++.++.+.+++++|+..+++++.. .|+.+..++.+|.++.++|+|++|+.+|++++. .++..
T Consensus 124 ~~~a~~L~~~~~~eeA~~~~~~~l~~--------~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~ 187 (694)
T PRK15179 124 ILMLRGVKRQQGIEAGRAEIELYFSG--------GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEF 187 (694)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc--------CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCc
Confidence 99999999999999999999999965 477788899999999999999999999999997 23566
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
..++..+|.++..+|+.++|...|++|++.+
T Consensus 188 ~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~ 218 (694)
T PRK15179 188 ENGYVGWAQSLTRRGALWRARDVLQAGLDAI 218 (694)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 7889999999999999999999999999864
No 79
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.84 E-value=2.7e-07 Score=109.53 Aligned_cols=217 Identities=17% Similarity=0.148 Sum_probs=172.3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...-++|...+...++..|+..|..++.+. .....+.+.|.+|+.+|.+.+.+..+.++++...... .
T Consensus 223 ~a~~ek~lgnaaykkk~f~~a~q~y~~a~el~---------~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~r-a 292 (539)
T KOG0548|consen 223 KAHKEKELGNAAYKKKDFETAIQHYAKALELA---------TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELR-A 292 (539)
T ss_pred hhhHHHHHHHHHHHhhhHHHHHHHHHHHHhHh---------hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHH-H
Confidence 46677789999999999999999999999983 3456678899999999999999999999887643321 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--h----------------cCCCCHHHHHHHHHHHHHHHHcC
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL--S----------------SGPDHPDVAATFINVAMMYQDIG 1138 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~--~----------------~g~d~p~~a~~~~nLA~iy~~~g 1138 (1403)
+...++.++..+|..|..+++++.|+.+|.+++.-.+. . .---.|..+.-...-|..++..|
T Consensus 293 d~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~g 372 (539)
T KOG0548|consen 293 DYKLIAKALARLGNAYTKREDYEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKG 372 (539)
T ss_pred HHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhcc
Confidence 22335667777888999999999999999998864332 0 00123444555566688999999
Q ss_pred CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1139 KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1139 ~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
+|..|+.+|.+|+... |..+..|.|.|.+|..+|++..|+.-.+.++++ +|....++..-+.++
T Consensus 373 dy~~Av~~YteAIkr~--------P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL--------~p~~~kgy~RKg~al 436 (539)
T KOG0548|consen 373 DYPEAVKHYTEAIKRD--------PEDARLYSNRAACYLKLGEYPEALKDAKKCIEL--------DPNFIKAYLRKGAAL 436 (539)
T ss_pred CHHHHHHHHHHHHhcC--------CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CchHHHHHHHHHHHH
Confidence 9999999999988753 778899999999999999999999999999886 667776776666666
Q ss_pred HHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1219 MRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1219 ~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
...++|+.|++.|. ++++...
T Consensus 437 ------~~mk~ydkAleay~--eale~dp 457 (539)
T KOG0548|consen 437 ------RAMKEYDKALEAYQ--EALELDP 457 (539)
T ss_pred ------HHHHHHHHHHHHHH--HHHhcCc
Confidence 88999999999998 5555443
No 80
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=98.83 E-value=3.1e-07 Score=112.45 Aligned_cols=244 Identities=14% Similarity=0.006 Sum_probs=165.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+...|.++..+|+++.|..++.++.+.. +++. ..+....+.++...|++++|...+++.+..
T Consensus 118 ~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~-----p~~~--l~~~~~~a~l~l~~~~~~~Al~~l~~l~~~-------- 182 (409)
T TIGR00540 118 VLNLIKAAEAAQQRGDEARANQHLEEAAELA-----GNDN--ILVEIARTRILLAQNELHAARHGVDKLLEM-------- 182 (409)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CcCc--hHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------
Confidence 4556667899999999999999999987652 1111 123444588899999999999998888776
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---------------HHhhc---------------CCCCH----HH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL---------------LSLSS---------------GPDHP----DV 1123 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l---------------~~~~~---------------g~d~p----~~ 1123 (1403)
.|....++..++.+|...|++++|++++.+.++. +...+ -...| ..
T Consensus 183 ~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~ 262 (409)
T TIGR00540 183 APRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHN 262 (409)
T ss_pred CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCC
Confidence 3444567888999999999999888877766632 00000 00122 24
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
...+..+|..+...|++++|+..++++++.. +++..... ...........++...++..++++++. .++
T Consensus 263 ~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~-----pd~~~~~~-~~l~~~~~l~~~~~~~~~~~~e~~lk~-----~p~ 331 (409)
T TIGR00540 263 IALKIALAEHLIDCDDHDSAQEIIFDGLKKL-----GDDRAISL-PLCLPIPRLKPEDNEKLEKLIEKQAKN-----VDD 331 (409)
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHhhC-----CCcccchh-HHHHHhhhcCCCChHHHHHHHHHHHHh-----CCC
Confidence 5677888999999999999999999999864 22221110 112222334457888888888887763 345
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHH--HHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIH--AFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~--a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
++. ......+|.++ ..+|++++|..+++ ++. .+..+|+... .+..+. ..|+.++|..+|++++.
T Consensus 332 ~~~-~~ll~sLg~l~------~~~~~~~~A~~~le--~a~-a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 332 KPK-CCINRALGQLL------MKHGEFIEAADAFK--NVA-ACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred Chh-HHHHHHHHHHH------HHcccHHHHHHHHH--HhH-HhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 553 25556677776 88999999999887 321 2222343322 333333 88999999999999988
No 81
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=3.8e-07 Score=104.93 Aligned_cols=172 Identities=15% Similarity=0.076 Sum_probs=144.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.-+.-+.++...|++++|...-...+.+ ++..+.++...|.+++..++.+.|+.+|+++|.+ +++|.
T Consensus 171 a~~lka~cl~~~~~~~~a~~ea~~ilkl--------d~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l-----dpdh~ 237 (486)
T KOG0550|consen 171 AKLLKAECLAFLGDYDEAQSEAIDILKL--------DATNAEALYVRGLCLYYNDNADKAINHFQQALRL-----DPDHQ 237 (486)
T ss_pred HHHhhhhhhhhcccchhHHHHHHHHHhc--------ccchhHHHHhcccccccccchHHHHHHHhhhhcc-----Chhhh
Confidence 3344688899999999999877666665 5677888999999999999999999999999987 45554
Q ss_pred hH---------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1080 DT---------AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1080 ~~---------~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.. ...+..-|.-.+..|+|..|.++|.+||.+-.. +....+..|.|.|.+...+|+..+|+.-.+.|
T Consensus 238 ~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~----n~~~naklY~nra~v~~rLgrl~eaisdc~~A 313 (486)
T KOG0550|consen 238 KSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPS----NKKTNAKLYGNRALVNIRLGRLREAISDCNEA 313 (486)
T ss_pred hHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCcc----ccchhHHHHHHhHhhhcccCCchhhhhhhhhh
Confidence 43 344556678889999999999999999986321 23346788999999999999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
+.+. +.+..++...|.++...++|++|++.|++|++.-
T Consensus 314 l~iD--------~syikall~ra~c~l~le~~e~AV~d~~~a~q~~ 351 (486)
T KOG0550|consen 314 LKID--------SSYIKALLRRANCHLALEKWEEAVEDYEKAMQLE 351 (486)
T ss_pred hhcC--------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 9975 5678899999999999999999999999999863
No 82
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.81 E-value=6.7e-07 Score=119.53 Aligned_cols=236 Identities=13% Similarity=0.056 Sum_probs=157.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|+.+|.+.... ...|+ ..+|+.|...|.+.|++++|..++.+..... .|.
T Consensus 506 dvvTynaLI~gy~k~G~~eeAl~lf~~M~~~------Gv~PD-~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~---~gi 575 (1060)
T PLN03218 506 NVHTFGALIDGCARAGQVAKAFGAYGIMRSK------NVKPD-RVVFNALISACGQSGAVDRAFDVLAEMKAET---HPI 575 (1060)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHc------CCCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhc---CCC
Confidence 4567777888888889999998888876553 11233 4578888888888899988888888765421 111
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|+ ..+|+.|...|.+.|++++|+++|+++... | .+....+|+.+...|.+.|++++|+.+|++..+.
T Consensus 576 -~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g--i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~--- 643 (1060)
T PLN03218 576 -DPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N--IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK--- 643 (1060)
T ss_pred -CCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C--CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc---
Confidence 233 356777788888888888888888877642 1 1223456778888888888888888888876542
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|- .|+ ..+|..|...|...|++++|.++++++.+. | ......++..|...| ...|++++|..+
T Consensus 644 --Gv-~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~-----G--~~pd~~tynsLI~ay------~k~G~~eeA~~l 706 (1060)
T PLN03218 644 --GV-KPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ-----G--IKLGTVSYSSLMGAC------SNAKNWKKALEL 706 (1060)
T ss_pred --CC-CCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHH------HhCCCHHHHHHH
Confidence 11 122 346777888888888888888888776542 1 111233556666666 778888888887
Q ss_pred HHHHHHHHHHh--hChHHHHHHHHH----HHhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILK--AHPDLIHAFQAV----AAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~--~~p~~~~a~~~L----a~~G~~~eA~~~~ekAL~ 1277 (1403)
+. ++.. ..|+.. +|..| ++.|++++|..+|++...
T Consensus 707 f~-----eM~~~g~~Pdvv-tyN~LI~gy~k~G~~eeAlelf~eM~~ 747 (1060)
T PLN03218 707 YE-----DIKSIKLRPTVS-TMNALITALCEGNQLPKALEVLSEMKR 747 (1060)
T ss_pred HH-----HHHHcCCCCCHH-HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77 3322 233332 22222 277888888888887654
No 83
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=1e-06 Score=101.11 Aligned_cols=301 Identities=13% Similarity=0.065 Sum_probs=199.3
Q ss_pred HHHHHHHHHHHHH-ccccCCccHHHhHHHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHH
Q 000589 921 TLWSDLKEFAKLK-YQFELPEDARLWVKKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAK 999 (1403)
Q Consensus 921 ~lw~~I~~~~~~r-f~y~l~~~~~~~~~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~ 999 (1403)
.+|.+|.-.+... +........+..++..+.+|.=...+|- .++.|...... +...++ +.-+.-++|.. ..
T Consensus 196 wls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~--lak~~~~~Gdn-~~a~~~---Fe~~~~~dpy~--i~ 267 (564)
T KOG1174|consen 196 WLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMA--LGKCLYYNGDY-FQAEDI---FSSTLCANPDN--VE 267 (564)
T ss_pred HHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHH--HhhhhhhhcCc-hHHHHH---HHHHhhCChhh--hh
Confidence 4666776655533 3333333333455555556553333321 12233222221 111111 12222333333 33
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+-..|.++...|+++.-..+....+.+.. ..+.-+.--+.+.+...++..|+.+-+|+|+. .+
T Consensus 268 ~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~--------~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--------~~ 331 (564)
T KOG1174|consen 268 AMDLYAVLLGQEGGCEQDSALMDYLFAKVK--------YTASHWFVHAQLLYDEKKFERALNFVEKCIDS--------EP 331 (564)
T ss_pred hHHHHHHHHHhccCHhhHHHHHHHHHhhhh--------cchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--------Cc
Confidence 334457788888999887777777666632 23444555677788889999999999999887 34
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
....+|..-|.++..+++.++|+-.|+.|..+. |....+|..|-.+|...|++.+|....+.+++..
T Consensus 332 r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La--------p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~~----- 398 (564)
T KOG1174|consen 332 RNHEALILKGRLLIALERHTQAVIAFRTAQMLA--------PYRLEIYRGLFHSYLAQKRFKEANALANWTIRLF----- 398 (564)
T ss_pred ccchHHHhccHHHHhccchHHHHHHHHHHHhcc--------hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHHh-----
Confidence 556788889999999999999999999998763 7778889999999999999999999999988876
Q ss_pred CCcHHHHHHHHHHH-HHHH-HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALA-IAFN-CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA-~~y~-~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+..+.++..+| .++. .---.++|..++++++.+ .|...-+...++.+. ...|.++.++.++
T Consensus 399 ---~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--------~P~Y~~AV~~~AEL~------~~Eg~~~D~i~LL 461 (564)
T KOG1174|consen 399 ---QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--------NPIYTPAVNLIAELC------QVEGPTKDIIKLL 461 (564)
T ss_pred ---hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--------CCccHHHHHHHHHHH------HhhCccchHHHHH
Confidence 44566666665 3333 233457889999998875 566666777788877 7889999999999
Q ss_pred HHHHHHHHHhhChHHHHHHHHHHHhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
+ ++|..+.+..-....-.-++.+..+++|+.+|..||+
T Consensus 462 e--~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr 499 (564)
T KOG1174|consen 462 E--KHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALR 499 (564)
T ss_pred H--HHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 8 5555554322211111222277889999999999987
No 84
>PRK14574 hmsH outer membrane protein; Provisional
Probab=98.78 E-value=2.7e-06 Score=111.03 Aligned_cols=103 Identities=15% Similarity=0.151 Sum_probs=81.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
.+.......+..+|.++..+|++++|+++|+++++. .|....++..|+.+|...++.++|+..+++++...
T Consensus 96 ~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~--------dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d- 166 (822)
T PRK14574 96 SSMNISSRGLASAARAYRNEKRWDQALALWQSSLKK--------DPTNPDLISGMIMTQADAGRGGVVLKQATELAERD- 166 (822)
T ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--------CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-
Confidence 444555677777899999999999999999999988 34445666788999999999999999999987762
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|.. ..+..++.++...+++.+|+..+++++..
T Consensus 167 -------p~~-~~~l~layL~~~~~~~~~AL~~~ekll~~ 198 (822)
T PRK14574 167 -------PTV-QNYMTLSYLNRATDRNYDALQASSEAVRL 198 (822)
T ss_pred -------cch-HHHHHHHHHHHhcchHHHHHHHHHHHHHh
Confidence 332 23355666776788887899999999875
No 85
>PLN02789 farnesyltranstransferase
Probab=98.77 E-value=8.3e-07 Score=104.28 Aligned_cols=210 Identities=9% Similarity=0.143 Sum_probs=158.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
+-.++...+++++|+.++.+++.+ +|....++...+.++..+| ++++|+.++.+++.. +|...
T Consensus 43 ~ra~l~~~e~serAL~lt~~aI~l--------nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npkny 106 (320)
T PLN02789 43 FRAVYASDERSPRALDLTADVIRL--------NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNY 106 (320)
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHH--------CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcch
Confidence 344566788999999999999998 7888889999999999998 689999999999986 46777
Q ss_pred HHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1083 HSYGNMALFYHGLNQT--ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~--~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
+++++.+.++..+|+. ++++.++.+++.+ +|....++.+.+.++...|++++|++++.+++++.
T Consensus 107 qaW~~R~~~l~~l~~~~~~~el~~~~kal~~--------dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d------ 172 (320)
T PLN02789 107 QIWHHRRWLAEKLGPDAANKELEFTRKILSL--------DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEED------ 172 (320)
T ss_pred HHhHHHHHHHHHcCchhhHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC------
Confidence 7899999999888874 7788999898865 57778899999999999999999999999999864
Q ss_pred CcHHHHHHHHHHHHHHHHc---CCH----HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCM---GAF----KLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~---Gd~----~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
+....+++..+.++... |.+ ++++.+..+++.+ .|....++..++.++... -...++..+|
T Consensus 173 --~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~--------~P~N~SaW~Yl~~ll~~~--~~~l~~~~~~ 240 (320)
T PLN02789 173 --VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILA--------NPRNESPWRYLRGLFKDD--KEALVSDPEV 240 (320)
T ss_pred --CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHh--------CCCCcCHHHHHHHHHhcC--CcccccchhH
Confidence 44566788888887765 333 4678888888775 445556667777766210 0012445567
Q ss_pred HHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1234 FNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+..+. ++....|....++.-|+
T Consensus 241 ~~~~~-----~~~~~~~~s~~al~~l~ 262 (320)
T PLN02789 241 SSVCL-----EVLSKDSNHVFALSDLL 262 (320)
T ss_pred HHHHH-----HhhcccCCcHHHHHHHH
Confidence 76666 33334454444555554
No 86
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.76 E-value=1.2e-07 Score=101.34 Aligned_cols=131 Identities=19% Similarity=0.196 Sum_probs=105.2
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
...+.++.++|.++..+|++++|+.+|++++.+. ++++..+.++.++|.+|...|++++|+.+|++|+.+....
T Consensus 32 ~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~- 105 (168)
T CHL00033 32 EKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFL- 105 (168)
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCc-
Confidence 3457788999999999999999999999999873 3455667799999999999999999999999999874221
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMK 1215 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La 1215 (1403)
+..+...+.++.++|..+..+|+++.|+.++++++.++++.++.++..+..+..+++
T Consensus 106 ~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~~~~~~~~~ 162 (168)
T CHL00033 106 PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNYIEAQNWLK 162 (168)
T ss_pred HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 111234445555666666699999999999999999999999988876666666554
No 87
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.75 E-value=1.3e-07 Score=120.96 Aligned_cols=154 Identities=12% Similarity=0.049 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
++..++.+|.+....|++++|+.++..++++ .|+...+..++|.++.+++++++|+..+++++..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~--------~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~------- 149 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQR--------FPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG------- 149 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh--------CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-------
Confidence 3788899999999999999999999999998 6788899999999999999999999999999987
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|+.+.+++.+|.++..+|+|++|+.+|++++. .+|+...++.++|.++...|+.++|...|++|++..
T Consensus 150 -~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~--------~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~-- 218 (694)
T PRK15179 150 -GSSSAREILLEAKSWDEIGQSEQADACFERLSR--------QHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI-- 218 (694)
T ss_pred -CCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHh--------cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh--
Confidence 478888999999999999999999999999995 256777889999999999999999999999999875
Q ss_pred HhCCCcHHHHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNC 1178 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~ 1178 (1403)
++........+..|...|..
T Consensus 219 --~~~~~~~~~~~~~~~~~~~~ 238 (694)
T PRK15179 219 --GDGARKLTRRLVDLNADLAA 238 (694)
T ss_pred --CcchHHHHHHHHHHHHHHHH
Confidence 23333334444455544433
No 88
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.74 E-value=2e-05 Score=94.65 Aligned_cols=142 Identities=15% Similarity=0.083 Sum_probs=108.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH----------
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN---------- 1070 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~---------- 1070 (1403)
.|+.+.+.++.+..++|+..+.-+ ++..-.++...|+++|++|+|++|...|+..+.-.
T Consensus 82 ~fEKAYc~Yrlnk~Dealk~~~~~-----------~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~ 150 (652)
T KOG2376|consen 82 FFEKAYCEYRLNKLDEALKTLKGL-----------DRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRA 150 (652)
T ss_pred hHHHHHHHHHcccHHHHHHHHhcc-----------cccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHH
Confidence 378999999999999999888711 11223466778999999999999999999864321
Q ss_pred -------------HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC-------HHHHHHHHHH
Q 000589 1071 -------------ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH-------PDVAATFINV 1130 (1403)
Q Consensus 1071 -------------er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~-------p~~a~~~~nL 1130 (1403)
.+.......++-..++|.|.++...|+|.+|++.+++|+.+++..+..++ .++..+...|
T Consensus 151 nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQl 230 (652)
T KOG2376|consen 151 NLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQL 230 (652)
T ss_pred HHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHH
Confidence 01111122235677899999999999999999999999998887654422 2356678899
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l 1153 (1403)
+.+++.+|+..+|...|...+..
T Consensus 231 ayVlQ~~Gqt~ea~~iy~~~i~~ 253 (652)
T KOG2376|consen 231 AYVLQLQGQTAEASSIYVDIIKR 253 (652)
T ss_pred HHHHHHhcchHHHHHHHHHHHHh
Confidence 99999999999999999877764
No 89
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=98.71 E-value=3.8e-06 Score=104.95 Aligned_cols=222 Identities=16% Similarity=0.147 Sum_probs=159.3
Q ss_pred HhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH
Q 000589 982 LNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIM 1061 (1403)
Q Consensus 982 ~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~ 1061 (1403)
.+..-+..|+.|... ..|..++.....+|++++|.-+|.+|++. .|.....+...+.+|.++|++..|.+
T Consensus 193 l~~~llAAHL~p~d~--e~W~~ladls~~~~~i~qA~~cy~rAI~~--------~p~n~~~~~ers~L~~~~G~~~~Am~ 262 (895)
T KOG2076|consen 193 LNFWLLAAHLNPKDY--ELWKRLADLSEQLGNINQARYCYSRAIQA--------NPSNWELIYERSSLYQKTGDLKRAME 262 (895)
T ss_pred HHHHHHHHhcCCCCh--HHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CCcchHHHHHHHHHHHHhChHHHHHH
Confidence 344555667777665 77888899999999999999999999998 55667788889999999999999999
Q ss_pred HHHHHHHHHHHhcCCCChhH-------------------------------------HHHHHHHHHHHHHCCCHHHHHHH
Q 000589 1062 QQHKELIINERCLGLDHPDT-------------------------------------AHSYGNMALFYHGLNQTELALRH 1104 (1403)
Q Consensus 1062 ~~~kAL~i~er~lg~d~p~~-------------------------------------~~a~~nLA~~~~~~G~~~eAl~~ 1104 (1403)
.|.+++...- +.+.+. ...++-++.++.....++.|+.+
T Consensus 263 ~f~~l~~~~p----~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~ 338 (895)
T KOG2076|consen 263 TFLQLLQLDP----PVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMK 338 (895)
T ss_pred HHHHHHhhCC----chhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHH
Confidence 9988877631 001111 11233445555555555555554
Q ss_pred HHHHHH----------------------HHH-------------hh-----c----------------CCCCHHHHHHHH
Q 000589 1105 MSRALL----------------------LLS-------------LS-----S----------------GPDHPDVAATFI 1128 (1403)
Q Consensus 1105 l~rAL~----------------------l~~-------------~~-----~----------------g~d~p~~a~~~~ 1128 (1403)
...... ++. .. + .....+....+.
T Consensus 339 i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~ 418 (895)
T KOG2076|consen 339 IVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYL 418 (895)
T ss_pred HHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHH
Confidence 433322 000 00 0 000123456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~ 1208 (1403)
.++..|...|+|.+|+.+|-.+...- ....+..|..+|.+|..+|.+++|+++|.+++.. .|...
T Consensus 419 d~a~al~~~~~~~~Al~~l~~i~~~~-------~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~--------~p~~~ 483 (895)
T KOG2076|consen 419 DLADALTNIGKYKEALRLLSPITNRE-------GYQNAFVWYKLARCYMELGEYEEAIEFYEKVLIL--------APDNL 483 (895)
T ss_pred HHHHHHHhcccHHHHHHHHHHHhcCc-------cccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCCch
Confidence 99999999999999999998776532 2234778999999999999999999999999985 45566
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
++...|+.++ ..+|+.++|.+.+.
T Consensus 484 D~Ri~Lasl~------~~~g~~EkalEtL~ 507 (895)
T KOG2076|consen 484 DARITLASLY------QQLGNHEKALETLE 507 (895)
T ss_pred hhhhhHHHHH------HhcCCHHHHHHHHh
Confidence 7778888888 89999999998877
No 90
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.69 E-value=1.1e-07 Score=98.88 Aligned_cols=112 Identities=14% Similarity=-0.033 Sum_probs=96.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
++.+|..+...|++++|+.+|++++.+ .|....++..+|.++..+|++++|+..|++++.+ .|.
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l--------~p~ 90 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMA--------QPWSWRAHIALAGTWMMLKEYTTAINFYGHALML--------DAS 90 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc--------CCC
Confidence 566899999999999999999999887 5777889999999999999999999999999987 467
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
...+++++|.++..+|++++|+..|++++.+. |.....+.++|.+...
T Consensus 91 ~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~--------p~~~~~~~~~~~~~~~ 138 (144)
T PRK15359 91 HPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS--------YADASWSEIRQNAQIM 138 (144)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------CCChHHHHHHHHHHHH
Confidence 77899999999999999999999999999863 4444456666665543
No 91
>PLN03218 maturation of RBCL 1; Provisional
Probab=98.68 E-value=2.3e-06 Score=114.60 Aligned_cols=237 Identities=16% Similarity=0.103 Sum_probs=172.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|.++|.+...... ...|+ ..+|+.|...|.+.|++++|..+|++.... |
T Consensus 541 D~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~----gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~-----g- 609 (1060)
T PLN03218 541 DRVVFNALISACGQSGAVDRAFDVLAEMKAETH----PIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEY-----N- 609 (1060)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcC----CCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-----C-
Confidence 356788888999999999999999998765311 11233 357888888999999999999999887653 1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
-+.....|+.+...|...|++++|+.+|.+.... | -.|+ ..+|..|...|...|++++|++++++..+.
T Consensus 610 -i~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~-----G-v~PD-~~TynsLI~a~~k~G~~eeA~~l~~eM~k~--- 678 (1060)
T PLN03218 610 -IKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK-----G-VKPD-EVFFSALVDVAGHAGDLDKAFEILQDARKQ--- 678 (1060)
T ss_pred -CCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhCCCHHHHHHHHHHHHHc---
Confidence 1223467888999999999999999999987653 1 1233 456888889999999999999999987653
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|. .....+|..|...|...|++++|++.|++.... | -.|. ..+++.|...| ...|++++|+.+
T Consensus 679 --G~--~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-----g-~~Pd-vvtyN~LI~gy------~k~G~~eeAlel 741 (1060)
T PLN03218 679 --GI--KLGTVSYSSLMGACSNAKNWKKALELYEDIKSI-----K-LRPT-VSTMNALITAL------CEGNQLPKALEV 741 (1060)
T ss_pred --CC--CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHH------HHCCCHHHHHHH
Confidence 11 223457888999999999999999998876432 1 1222 34466666666 788999999998
Q ss_pred HHHHHHHHHHh--hChHHHH---HHHHHHHhCChHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILK--AHPDLIH---AFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1237 l~~qkALei~~--~~p~~~~---a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
+. ++.. -.|+... .+..++..|++++|..++.+.++
T Consensus 742 f~-----eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k 782 (1060)
T PLN03218 742 LS-----EMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKE 782 (1060)
T ss_pred HH-----HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 88 3332 2344322 22222378899999998888876
No 92
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.68 E-value=1.8e-06 Score=103.68 Aligned_cols=286 Identities=13% Similarity=0.079 Sum_probs=201.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
+...+.+-...|..++-..++++|+..+ |..-..+...+..+...|+...|...+.+|++. +|.
T Consensus 553 Wlra~~~ek~hgt~Esl~Allqkav~~~--------pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pn 616 (913)
T KOG0495|consen 553 WLRAAMFEKSHGTRESLEALLQKAVEQC--------PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPN 616 (913)
T ss_pred HHHHHHHHHhcCcHHHHHHHHHHHHHhC--------CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCC
Confidence 4444555556788888888888888874 223334556677888889999999999999876 344
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.-..+..--.+.+...+++.|..+|.+|... ..+...|+.-+.+...+++.++|+++++++|+.+
T Consensus 617 seeiwlaavKle~en~e~eraR~llakar~~---------sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f------ 681 (913)
T KOG0495|consen 617 SEEIWLAAVKLEFENDELERARDLLAKARSI---------SGTERVWMKSANLERYLDNVEEALRLLEEALKSF------ 681 (913)
T ss_pred cHHHHHHHHHHhhccccHHHHHHHHHHHhcc---------CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC------
Confidence 4455555556778889999999999998863 2245667888888899999999999999999876
Q ss_pred CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHH
Q 000589 1161 EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQ 1240 (1403)
Q Consensus 1161 ~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~q 1240 (1403)
|.....|..+|+++.++++.+.|...|...+..+ |..+ -....|+.+- ...|+.-.|...+.
T Consensus 682 --p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~c-----P~~i---pLWllLakle------Ek~~~~~rAR~ild-- 743 (913)
T KOG0495|consen 682 --PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKC-----PNSI---PLWLLLAKLE------EKDGQLVRARSILD-- 743 (913)
T ss_pred --CchHHHHHHHhHHHHHHHHHHHHHHHHHhccccC-----CCCc---hHHHHHHHHH------HHhcchhhHHHHHH--
Confidence 6677789999999999999999998887766542 2222 2233344443 66778888888887
Q ss_pred HHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHH----------HhhcCCCCccccchHHHHHHHHHHHHHHH
Q 000589 1241 KAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLN----------AALLGETLPRGRGFDERAARAAAEVRKKA 1306 (1403)
Q Consensus 1241 kALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~----------~~~~G~~~p~~~~~~era~~a~~e~r~l~ 1306 (1403)
...-.+|.....+...- +.|+.++|..++.+||+ .+..-+.+|..+.-..-|.+-.+.-.+..
T Consensus 744 ---rarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkce~dphVl 820 (913)
T KOG0495|consen 744 ---RARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVL 820 (913)
T ss_pred ---HHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhccCCchhH
Confidence 33445555444333332 78999999999999998 33444455544432211222222223455
Q ss_pred HHhhHHHhhCCCchhhhHHHHHHHHHHhcCCC
Q 000589 1307 VAKGLLIRPHGLPAQALPPLTQLLNIINSSGA 1338 (1403)
Q Consensus 1307 ~a~G~~~~~~g~~~eA~~~l~qaL~i~~s~g~ 1338 (1403)
.+-+.++-...+++.|.+.|.+++.+....|.
T Consensus 821 laia~lfw~e~k~~kar~Wf~Ravk~d~d~GD 852 (913)
T KOG0495|consen 821 LAIAKLFWSEKKIEKAREWFERAVKKDPDNGD 852 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCccch
Confidence 55577788889999999999999988765443
No 93
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.68 E-value=1.1e-06 Score=113.22 Aligned_cols=246 Identities=12% Similarity=0.062 Sum_probs=159.0
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
..+....++..+...+...+++++|+.++..+++. +|.....|+.+|.+|++.+++.+|... .++.+...
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~ 95 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQ 95 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhccc
Confidence 34455777888999999999999999999988887 788889999999999999998888776 55554321
Q ss_pred h------------cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1073 C------------LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1073 ~------------lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
. .+ +.+..-.+++.||.||-.+|++++|...|++++.+ +|..+.+++++|..|... ++
T Consensus 96 ~~~~~~ve~~~~~i~-~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~--------D~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 96 NLKWAIVEHICDKIL-LYGENKLALRTLAEAYAKLNENKKLKGVWERLVKA--------DRDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred ccchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhc--------CcccHHHHHHHHHHHHHh-hH
Confidence 1 11 23344468899999999999999999999999975 366778899999999999 99
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR 1220 (1403)
Q Consensus 1141 deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r 1220 (1403)
++|+.++.+|+..+-.. .........|..+ +....-+++.=....++... ..| .......+.-|-..|
T Consensus 166 ~KA~~m~~KAV~~~i~~--kq~~~~~e~W~k~--~~~~~~d~d~f~~i~~ki~~----~~~--~~~~~~~~~~l~~~y-- 233 (906)
T PRK14720 166 EKAITYLKKAIYRFIKK--KQYVGIEEIWSKL--VHYNSDDFDFFLRIERKVLG----HRE--FTRLVGLLEDLYEPY-- 233 (906)
T ss_pred HHHHHHHHHHHHHHHhh--hcchHHHHHHHHH--HhcCcccchHHHHHHHHHHh----hhc--cchhHHHHHHHHHHH--
Confidence 99999999999864321 0111111112111 11122222222222222211 111 223333334444444
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH--HhCChHHHHHHHHHHHHHhh
Q 000589 1221 ELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA--AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1221 ~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La--~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
...+++++++.++. .++...|....+...|+ -.+.|.. ...+++.++...
T Consensus 234 ----~~~~~~~~~i~iLK-----~iL~~~~~n~~a~~~l~~~y~~kY~~-~~~~ee~l~~s~ 285 (906)
T PRK14720 234 ----KALEDWDEVIYILK-----KILEHDNKNNKAREELIRFYKEKYKD-HSLLEDYLKMSD 285 (906)
T ss_pred ----hhhhhhhHHHHHHH-----HHHhcCCcchhhHHHHHHHHHHHccC-cchHHHHHHHhc
Confidence 88899999999998 44444444444555555 2233433 455555555333
No 94
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.67 E-value=1.1e-06 Score=96.61 Aligned_cols=119 Identities=14% Similarity=0.179 Sum_probs=103.1
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1053 AGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1053 ~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
.++.++++..+++++.. +|+....+..||.+|...|++++|+..|++|+.+ .|....++.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 67778999999999887 4777889999999999999999999999999986 3556677899998
Q ss_pred HH-HHcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1133 MY-QDIGK--MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1133 iy-~~~g~--~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
++ ...|+ +++|+.++++++++. |....++++||.++...|++++|+.++++++++
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~d--------P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALALD--------ANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 75 67787 599999999999864 556678999999999999999999999999886
No 95
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=98.66 E-value=6.1e-07 Score=95.84 Aligned_cols=119 Identities=18% Similarity=0.127 Sum_probs=97.8
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
......+..++.+|.++...|++++|+.+|.+++.+. ++++..+.++.++|.+|..+|++++|+.++++|+.+.
T Consensus 29 ~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~-----~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~- 102 (168)
T CHL00033 29 TSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLE-----IDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN- 102 (168)
T ss_pred CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcc-----ccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3344568889999999999999999999999999883 3345567899999999999999999999999999872
Q ss_pred HhcCCCChhHHHHHHHHHHHHH-------HCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYH-------GLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~-------~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
|.....+.++|.++. .+|+++.|+.++.+++..++..++.+++..
T Consensus 103 -------~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 103 -------PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred -------cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 333444555555555 999999999999999999998888776544
No 96
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.65 E-value=1e-06 Score=115.43 Aligned_cols=233 Identities=14% Similarity=0.035 Sum_probs=153.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC-------------------------------HHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMH-------------------------------REVANCCRY 1045 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~-------------------------------p~~a~a~~~ 1045 (1403)
+...|..+...|...|++++|+.+|.+.+..- ..++. .....+++.
T Consensus 188 ~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~ 264 (697)
T PLN03081 188 NLASWGTIIGGLVDAGNYREAFALFREMWEDG---SDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264 (697)
T ss_pred CeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhC---CCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHH
Confidence 34567778888889999999999998876421 00000 001234567
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
|...|.+.|++++|...|++.. .....+|+.|...|...|++++|+.+|++.... | -.|+ ..
T Consensus 265 Li~~y~k~g~~~~A~~vf~~m~-----------~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~ 326 (697)
T PLN03081 265 LIDMYSKCGDIEDARCVFDGMP-----------EKTTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QF 326 (697)
T ss_pred HHHHHHHCCCHHHHHHHHHhCC-----------CCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HH
Confidence 7788888999999988887541 123457888999999999999999999887542 1 1232 34
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~ 1205 (1403)
+|..+...|...|++++|.+.+..+++.. ......++..|...|.+.|++++|...|++..+ +
T Consensus 327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g-------~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~-------~--- 389 (697)
T PLN03081 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTG-------FPLDIVANTALVDLYSKWGRMEDARNVFDRMPR-------K--- 389 (697)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhC-------CCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC-------C---
Confidence 67888888888999999988888776532 112334667788888888888888887776432 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHH---HHhCChHHHHHHHHHHHH
Q 000589 1206 RTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAV---AAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1206 ~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~L---a~~G~~~eA~~~~ekAL~ 1277 (1403)
...+++.|...| ...|+.++|+.+++ +..+ ..-.|+.......+ +..|..++|..+|+...+
T Consensus 390 -d~~t~n~lI~~y------~~~G~~~~A~~lf~--~M~~-~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~ 454 (697)
T PLN03081 390 -NLISWNALIAGY------GNHGRGTKAVEMFE--RMIA-EGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSE 454 (697)
T ss_pred -CeeeHHHHHHHH------HHcCCHHHHHHHHH--HHHH-hCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 123455555555 67788888888877 2221 12344433322222 267788888888877765
No 97
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.65 E-value=7.1e-06 Score=101.05 Aligned_cols=245 Identities=17% Similarity=0.096 Sum_probs=177.6
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
+..+...++.++..|-.+++.+.|.++.++++++- ..+.+.++..||.++...+++.+|+.....++.-...-
T Consensus 474 d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~-------~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N 546 (799)
T KOG4162|consen 474 DPTDPLVIFYLALQYAEQRQLTSALDYAREALALN-------RGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDN 546 (799)
T ss_pred CCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhc-------CCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhh
Confidence 34445778889999999999999999999999982 22456789999999999999999999999988765321
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--------------------------------------
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS-------------------------------------- 1115 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~-------------------------------------- 1115 (1403)
+ ..+..-..+....++.++|+..+...+.+|+..
T Consensus 547 ~--------~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 547 H--------VLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred h--------hhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 1 111111222223455555555555555544411
Q ss_pred ---------------------cCCCCHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1116 ---------------------SGPDHPD--VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1116 ---------------------~g~d~p~--~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
.+++++. ....|...|..+...+..++|..++.+|-.+. +..+..|+..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 1122222 22345567788888899999999999998876 6778899999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH--HHHHHHHHHHHhhCh
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN--AASTQKAIDILKAHP 1250 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~--~l~~qkALei~~~~p 1250 (1403)
|.++...|++.+|.+.|..|+.+ .|+|.. +...+|.++ ...|+..-|.. ++. +.++..|
T Consensus 691 G~~~~~~~~~~EA~~af~~Al~l-----dP~hv~---s~~Ala~~l------le~G~~~la~~~~~L~-----dalr~dp 751 (799)
T KOG4162|consen 691 GLLLEVKGQLEEAKEAFLVALAL-----DPDHVP---SMTALAELL------LELGSPRLAEKRSLLS-----DALRLDP 751 (799)
T ss_pred hHHHHHHHhhHHHHHHHHHHHhc-----CCCCcH---HHHHHHHHH------HHhCCcchHHHHHHHH-----HHHhhCC
Confidence 99999999999999999999875 455554 455667776 56666665555 676 5555667
Q ss_pred HHHHHHHHHH----HhCChHHHHHHHHHHHHHhh
Q 000589 1251 DLIHAFQAVA----AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1251 ~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
....+++.|| .+|+.++|.++|+-|++...
T Consensus 752 ~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~ 785 (799)
T KOG4162|consen 752 LNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEE 785 (799)
T ss_pred CCHHHHHHHHHHHHHccchHHHHHHHHHHHhhcc
Confidence 7777888888 88999999999999998543
No 98
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.64 E-value=5.1e-07 Score=99.14 Aligned_cols=120 Identities=14% Similarity=0.147 Sum_probs=105.4
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.++.++++..+++++.. +|.....+..||.+|..+|++++|+..|++|+.+ .|+....+.++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~--------~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l--------~P~~~~~~~~lA~ 115 (198)
T PRK10370 52 QQTPEAQLQALQDKIRA--------NPQNSEQWALLGEYYLWRNDYDNALLAYRQALQL--------RGENAELYAALAT 115 (198)
T ss_pred chhHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHH
Confidence 56678888889888887 5677889999999999999999999999999998 3667788999999
Q ss_pred HH-HHCCC--HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1091 FY-HGLNQ--TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1091 ~~-~~~G~--~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
++ ...|+ +++|..++++++.+ +|....+++++|.++...|+|++|+.+|++++++.
T Consensus 116 aL~~~~g~~~~~~A~~~l~~al~~--------dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 116 VLYYQAGQHMTPQTREMIDKALAL--------DANEVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHhcCCCCcHHHHHHHHHHHHh--------CCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 74 67787 59999999999975 46667789999999999999999999999999875
No 99
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.63 E-value=3.8e-05 Score=94.84 Aligned_cols=294 Identities=17% Similarity=0.065 Sum_probs=185.3
Q ss_pred hhHHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHH
Q 000589 995 CSEAKNLVEMGKVQ-LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA----GDMAGAIMQQHKELII 1069 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~-~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~----G~~~eAi~~~~kAL~i 1069 (1403)
.++...++..++++ ...+.++++++|.++++..+... .......+|..+|.+|..+ ....+=..+.++++..
T Consensus 390 ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~---~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqa 466 (799)
T KOG4162|consen 390 PSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQ---RSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQA 466 (799)
T ss_pred CCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhh---hhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHH
Confidence 44445555555555 45688999999999999976433 2334567788888777543 4556666777777777
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.++....++.+ ..+.+++|.-|..+++.+.|+.+.++++.+. + .+.+.+|..||.++...+++.+|+.....
T Consensus 467 le~av~~d~~d-p~~if~lalq~A~~R~l~sAl~~~~eaL~l~----~---~~~~~~whLLALvlSa~kr~~~Al~vvd~ 538 (799)
T KOG4162|consen 467 LEEAVQFDPTD-PLVIFYLALQYAEQRQLTSALDYAREALALN----R---GDSAKAWHLLALVLSAQKRLKEALDVVDA 538 (799)
T ss_pred HHHHHhcCCCC-chHHHHHHHHHHHHHhHHHHHHHHHHHHHhc----C---CccHHHHHHHHHHHhhhhhhHHHHHHHHH
Confidence 77765444332 2677889999999999999999999999862 1 23456788899999999999999988877
Q ss_pred HHHHHHHHhC----------------------------------------------------------------------
Q 000589 1150 ALKKNERLLG---------------------------------------------------------------------- 1159 (1403)
Q Consensus 1150 AL~l~~~~~G---------------------------------------------------------------------- 1159 (1403)
+++-....++
T Consensus 539 al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~ 618 (799)
T KOG4162|consen 539 ALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSS 618 (799)
T ss_pred HHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHH
Confidence 7765433100
Q ss_pred -----------------------CCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1160 -----------------------EEHIQ--TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1160 -----------------------~~~~~--~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
++++. ....+...|..+...++.++|..++.+|..++ +.....++..
T Consensus 619 l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~--------~l~~~~~~~~ 690 (799)
T KOG4162|consen 619 LVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID--------PLSASVYYLR 690 (799)
T ss_pred HHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc--------hhhHHHHHHh
Confidence 00000 01122234444555555555555555555442 2333333434
Q ss_pred HHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHH--HHHHHHHHhhcCCCCccccch
Q 000589 1215 KTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGA--SANNSLNAALLGETLPRGRGF 1291 (1403)
Q Consensus 1215 a~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~--~~ekAL~~~~~G~~~p~~~~~ 1291 (1403)
|.++ ..+|++.+|.+.|. .|+.+.++|+....++..+- ..|+..-|.. ++..|++.. +.++
T Consensus 691 G~~~------~~~~~~~EA~~af~--~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d---p~n~----- 754 (799)
T KOG4162|consen 691 GLLL------EVKGQLEEAKEAFL--VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD---PLNH----- 754 (799)
T ss_pred hHHH------HHHHhhHHHHHHHH--HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC---CCCH-----
Confidence 4433 66777777777666 55555555555444444433 4454433333 555555421 1111
Q ss_pred HHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1292 DERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1292 ~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
+.....|..+..+|+..+|..+|+-++++-.+
T Consensus 755 ------------eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S 786 (799)
T KOG4162|consen 755 ------------EAWYYLGEVFKKLGDSKQAAECFQAALQLEES 786 (799)
T ss_pred ------------HHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence 23344588899999999999999999999776
No 100
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=98.62 E-value=3.2e-06 Score=110.70 Aligned_cols=265 Identities=13% Similarity=0.057 Sum_probs=177.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
+...|..+...|...|++++|+.+|.+.... | ..|+ ..+|..+...|...|++++|...+..+++. |.
T Consensus 289 ~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~-----g-~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-----g~ 356 (697)
T PLN03081 289 TTVAWNSMLAGYALHGYSEEALCLYYEMRDS-----G-VSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT-----GF 356 (697)
T ss_pred ChhHHHHHHHHHHhCCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh-----CC
Confidence 4566777888888889999998888876543 1 1222 346788888888889999888888877654 21
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+....+++.|...|.+.|++++|...|++... + ...+|+.|...|...|+.++|+++|++..+.
T Consensus 357 --~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----------~-d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~--- 420 (697)
T PLN03081 357 --PLDIVANTALVDLYSKWGRMEDARNVFDRMPR----------K-NLISWNALIAGYGNHGRGTKAVEMFERMIAE--- 420 (697)
T ss_pred --CCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHcCCHHHHHHHHHHHHHh---
Confidence 22345677888888889999999888877532 2 2346888888899999999999999886643
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
|- .|+ ..++..+..++...|+.++|.++|+...+.. |- .| ....+..+..++ ...|++++|.+.
T Consensus 421 --g~-~Pd-~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~----g~-~p-~~~~y~~li~~l------~r~G~~~eA~~~ 484 (697)
T PLN03081 421 --GV-APN-HVTFLAVLSACRYSGLSEQGWEIFQSMSENH----RI-KP-RAMHYACMIELL------GREGLLDEAYAM 484 (697)
T ss_pred --CC-CCC-HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhc----CC-CC-CccchHhHHHHH------HhcCCHHHHHHH
Confidence 11 122 3457777788888899999988888765421 11 11 123456666666 778888888877
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ +. ...|+.. ++..|. ..|+.+.|...+++.++. .+.+..+. ......
T Consensus 485 ~~-----~~-~~~p~~~-~~~~Ll~a~~~~g~~~~a~~~~~~l~~~---~p~~~~~y-----------------~~L~~~ 537 (697)
T PLN03081 485 IR-----RA-PFKPTVN-MWAALLTACRIHKNLELGRLAAEKLYGM---GPEKLNNY-----------------VVLLNL 537 (697)
T ss_pred HH-----HC-CCCCCHH-HHHHHHHHHHHcCCcHHHHHHHHHHhCC---CCCCCcch-----------------HHHHHH
Confidence 65 22 2233322 233332 778888888888776542 22221111 122336
Q ss_pred HhhCCCchhhhHHHHHHHHH
Q 000589 1313 IRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i 1332 (1403)
|...|++++|.+.+++..+.
T Consensus 538 y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 538 YNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHhCCCHHHHHHHHHHHHHc
Confidence 77889999998888876543
No 101
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.61 E-value=2.8e-07 Score=103.16 Aligned_cols=124 Identities=23% Similarity=0.264 Sum_probs=106.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....|+.+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.+.|.+|.++|.|+.|+.-++.||.+
T Consensus 77 ~~~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i---- 144 (304)
T KOG0553|consen 77 DKALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI---- 144 (304)
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc----
Confidence 4456888999999999999999999999999998 6777889999999999999999999999999998
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMD 1141 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~d 1141 (1403)
+|....+|..||.+|+.+|++.+|++.|++||++ +|+......+|..+-..+++..
T Consensus 145 ----Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLel--------dP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 145 ----DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALEL--------DPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred ----ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhcc--------CCCcHHHHHHHHHHHHHhcCCC
Confidence 6889999999999999999999999999999986 3444445555555544444433
No 102
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.58 E-value=4.8e-06 Score=91.97 Aligned_cols=170 Identities=19% Similarity=0.218 Sum_probs=132.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..++..|..++..|+|.+|+..|.+.+..+ +.++....+...+|.+++..|++++|+..+++.+..+ +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 47789999999999999999999999998874 5577888999999999999999999999999999875 6
Q ss_pred CChhHHHHHHHHHHHHHHCC-----------CHHHHHHHHHHHHHHHHhhcCCCCHHH--------------HHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLN-----------QTELALRHMSRALLLLSLSSGPDHPDV--------------AATFINVA 1131 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G-----------~~~eAl~~l~rAL~l~~~~~g~d~p~~--------------a~~~~nLA 1131 (1403)
+|+....+++.+|.+++.+. ...+|+..|+..+..+ ++++.. +.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77888899999999876543 2346777777777654 222322 22335678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
..|...|.|..|+..++.+++.. ++.+....++..|+.+|..+|..+.|.
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 89999999999999999999876 566778889999999999999988554
No 103
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.56 E-value=9.4e-07 Score=90.33 Aligned_cols=111 Identities=20% Similarity=0.223 Sum_probs=96.3
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHH
Q 000589 1020 LFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTE 1099 (1403)
Q Consensus 1020 ~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~ 1099 (1403)
.|++++.. +|.....+..+|..+...|++++|+..+++++.+ .|....++.++|.++..+|+++
T Consensus 5 ~~~~~l~~--------~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~ 68 (135)
T TIGR02552 5 TLKDLLGL--------DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYE 68 (135)
T ss_pred hHHHHHcC--------ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHH
Confidence 45566654 5667788999999999999999999999999886 3556788999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1100 LALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1100 eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|+.++++++.+ +|.....++++|.+|...|++++|+.+|++++++.
T Consensus 69 ~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 69 EAIDAYALAAAL--------DPDDPRPYFHAAECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHHHHHHhc--------CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 999999999875 35566778999999999999999999999999875
No 104
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.56 E-value=1.4e-06 Score=90.29 Aligned_cols=102 Identities=16% Similarity=0.068 Sum_probs=93.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~ 1116 (1403)
++.....+.+|..++..|++++|...|+-.+.+ .|.....+++||.++..+|+|.+|+..|.+|+.+
T Consensus 32 ~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L----- 98 (157)
T PRK15363 32 TQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI----- 98 (157)
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc-----
Confidence 678888999999999999999999999998887 5788899999999999999999999999999976
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1117 g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|+....+.++|.++...|+.+.|+..|+.|+.++
T Consensus 99 ---~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 ---KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred ---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 24555679999999999999999999999999988
No 105
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.56 E-value=1e-05 Score=100.49 Aligned_cols=296 Identities=14% Similarity=0.036 Sum_probs=180.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
.+.++....++...|++++|++++.+.... -.+....+-..|.++..+|++++|...|+..|..
T Consensus 4 SE~lLY~~~il~e~g~~~~AL~~L~~~~~~--------I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r-------- 67 (517)
T PF12569_consen 4 SELLLYKNSILEEAGDYEEALEHLEKNEKQ--------ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDR-------- 67 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHhhhhh--------CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------
Confidence 345666788899999999999999775544 3456778889999999999999999999999887
Q ss_pred ChhHHHHHHHHHHHHHHCC-----CHHHHHHHHHHHHHHHHhh-------c----CCC-------------CHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLN-----QTELALRHMSRALLLLSLS-------S----GPD-------------HPDVAATFI 1128 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G-----~~~eAl~~l~rAL~l~~~~-------~----g~d-------------~p~~a~~~~ 1128 (1403)
+|+....|..|..+..... +.+.-..+|.+....+... + |.. ...+..++.
T Consensus 68 NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~ 147 (517)
T PF12569_consen 68 NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFS 147 (517)
T ss_pred CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3566666666666663322 3444445554433221110 0 000 001122344
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHH--hC------CCcH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKKNERL--LG------EEHI-QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l~~~~--~G------~~~~-~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
+|-.+|....+..--..++...+...... +. .+.| ....+++.||..|...|++++|+++.++|++.
T Consensus 148 ~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h---- 223 (517)
T PF12569_consen 148 NLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH---- 223 (517)
T ss_pred HHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc----
Confidence 44444443222222222222211111100 00 1122 23567899999999999999999999999985
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHhCChHHHHHHHHHHHHHh
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVAAAGGSGNSGASANNSLNAA 1279 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La~~G~~~eA~~~~ekAL~~~ 1279 (1403)
.|...+.+..-|.++ ...|++.+|...++..+.++.....-....+.+.| +.|+.++|...+..-.+..
T Consensus 224 ----tPt~~ely~~Karil------Kh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~L-Ra~~~e~A~~~~~~Ftr~~ 292 (517)
T PF12569_consen 224 ----TPTLVELYMTKARIL------KHAGDLKEAAEAMDEARELDLADRYINSKCAKYLL-RAGRIEEAEKTASLFTRED 292 (517)
T ss_pred ----CCCcHHHHHHHHHHH------HHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHH-HCCCHHHHHHHHHhhcCCC
Confidence 466677778888777 99999999999888333333333322322222222 7799999988776654421
Q ss_pred hcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1280 LLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1280 ~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
. .|. .....+.. -=.....|..+.++|++..|+..|..+...+..
T Consensus 293 ~----~~~--~~L~~mQc-----~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~f~~ 337 (517)
T PF12569_consen 293 V----DPL--SNLNDMQC-----MWFETECAEAYLRQGDYGLALKRFHAVLKHFDD 337 (517)
T ss_pred C----Ccc--cCHHHHHH-----HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 1 111 10000111 113334477888889999999988888888764
No 106
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.56 E-value=3e-06 Score=90.94 Aligned_cols=127 Identities=21% Similarity=0.284 Sum_probs=101.5
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
..+..+.+++++|.++...|++++|+.+|++++.+. ++++....++.++|.++...|++++|+.+|++++.+.
T Consensus 30 ~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-- 102 (172)
T PRK02603 30 KKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-- 102 (172)
T ss_pred cHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence 456778889999999999999999999999999863 3344456789999999999999999999999999864
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHc-------CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCM-------GAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKT 1216 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~-------Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~ 1216 (1403)
+.....+..+|.+|... ++++.|+.++++|++++.+.+..++..+.++..|+..
T Consensus 103 ------p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~ 163 (172)
T PRK02603 103 ------PKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLKT 163 (172)
T ss_pred ------cccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHHh
Confidence 33445566677777665 5578888888889888888877666666666666653
No 107
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.54 E-value=1.4e-05 Score=90.54 Aligned_cols=175 Identities=15% Similarity=0.158 Sum_probs=141.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+..++..|..++..|+|++|+..|++.+..+ +..+....+...||.+|+..+++++|+.++++.+...
T Consensus 30 ~~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~----- 99 (243)
T PRK10866 30 NPPSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN----- 99 (243)
T ss_pred CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----
Confidence 357778899999999999999999999998863 5567778889999999999999999999999999985
Q ss_pred CCChhHHHHHHHHHHHHHHCC---------------C---HHHHHHHHHHHHHHHHhhcCCCCHH--------------H
Q 000589 1076 LDHPDTAHSYGNMALFYHGLN---------------Q---TELALRHMSRALLLLSLSSGPDHPD--------------V 1123 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G---------------~---~~eAl~~l~rAL~l~~~~~g~d~p~--------------~ 1123 (1403)
++||....+++.+|.++...+ + ..+|+..|++.+..+ |+.+. .
T Consensus 100 P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~l 174 (243)
T PRK10866 100 PTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRL 174 (243)
T ss_pred cCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHH
Confidence 778999999999998865544 2 245667777766543 22222 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
+.--..+|..|.+.|.|..|+.-++.+++-+ ++.+....+++.++.+|..+|..++|..+.+
T Consensus 175 a~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 175 AKYELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 2233467888999999999999999998865 5667888899999999999999999987654
No 108
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.53 E-value=1.4e-05 Score=96.79 Aligned_cols=236 Identities=10% Similarity=0.053 Sum_probs=166.9
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..++..+.-.+..++|..++...+..+.. +|+....+...|..+..+|+-++|..+.+.++.. +
T Consensus 8 ~~lF~~~lk~yE~kQYkkgLK~~~~iL~k--------~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~--------d 71 (700)
T KOG1156|consen 8 NALFRRALKCYETKQYKKGLKLIKQILKK--------FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRN--------D 71 (700)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHh--------CCccchhHHhccchhhcccchHHHHHHHHHHhcc--------C
Confidence 45666677777888999999999888874 4555667888999999999999999999999874 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
+....+|.-+|.++....+|++|+++|+.|+.+ .++...++..|+....++++|+.....-.+-+++.
T Consensus 72 ~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~---- 139 (700)
T KOG1156|consen 72 LKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR---- 139 (700)
T ss_pred cccchhHHHHHHHHhhhhhHHHHHHHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence 444567888999999999999999999999975 35567789999999999999998888877777765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+..-..|..+|..+...|++..|...+++-...... ++...... .....+ .+.......|.+++|.+.+.
T Consensus 140 ----~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~--~~s~~~~e---~se~~L-y~n~i~~E~g~~q~ale~L~ 209 (700)
T KOG1156|consen 140 ----PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT--SPSKEDYE---HSELLL-YQNQILIEAGSLQKALEHLL 209 (700)
T ss_pred ----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc--CCCHHHHH---HHHHHH-HHHHHHHHcccHHHHHHHHH
Confidence 445567888999999999999999888776554331 11111111 111111 12233356666666666554
Q ss_pred HHHHHHHHh---hChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1239 TQKAIDILK---AHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1239 ~qkALei~~---~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
..-+ +.-........+. ..+++++|...|...+.
T Consensus 210 -----~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 210 -----DNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred -----hhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 1111 1111112222232 66888888888877765
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.51 E-value=2.7e-06 Score=88.17 Aligned_cols=101 Identities=12% Similarity=0.013 Sum_probs=92.1
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..-..++.+|..++..|++++|..+|+-...+ +|.....+++||.++..+|+|++|+..|.+|+.+
T Consensus 33 ~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~--------Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L------ 98 (157)
T PRK15363 33 QPLNTLYRYAMQLMEVKEFAGAARLFQLLTIY--------DAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI------ 98 (157)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc------
Confidence 34667888999999999999999999998877 7888999999999999999999999999999987
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.|+....+.++|.|++..|+.+.|.+.|+.|+..+
T Consensus 99 --~~ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 99 --KIDAPQAPWAAAECYLACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 35566789999999999999999999999999886
No 110
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=2.7e-06 Score=93.84 Aligned_cols=164 Identities=17% Similarity=0.129 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.|+...+ .+++..++..|+-+.+..+..++... ++.....+.-+|...+..|+|.+|+..++++..+
T Consensus 63 ~p~d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l---- 129 (257)
T COG5010 63 NPEDLSI-AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL---- 129 (257)
T ss_pred CcchHHH-HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc----
Confidence 4555566 88999999999999999988886654 3333444455899999999999999999999865
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.|..+.+++.+|.+|.+.|++++|..-|.+|+++. +....++.|||..|...|+++.|..++..++..
T Consensus 130 ----~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 130 ----APTDWEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ----CCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 46678889999999999999999999999999986 344567899999999999999999999988752
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+..+. .+..+|+.+. ..+|++++|..+..
T Consensus 198 -----~~ad~---~v~~NLAl~~------~~~g~~~~A~~i~~ 226 (257)
T COG5010 198 -----PAADS---RVRQNLALVV------GLQGDFREAEDIAV 226 (257)
T ss_pred -----CCCch---HHHHHHHHHH------hhcCChHHHHhhcc
Confidence 23333 3456777776 88999999987655
No 111
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.48 E-value=2.3e-06 Score=94.37 Aligned_cols=157 Identities=14% Similarity=0.128 Sum_probs=124.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
..++..+...|+-+.+..+..++... ++.....+..+|......|+|.+|+..++++..+ .|..
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~--------~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l--------~p~d 133 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA--------YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARL--------APTD 133 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc--------CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhcc--------CCCC
Confidence 66778888888888888777775543 3333344445888899999999999999999887 4667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
..+|+.+|.+|-+.|++++|...|.+++++. +....+++|||+.|.-.|+++.|..++..+...-
T Consensus 134 ~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~--------~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~------- 198 (257)
T COG5010 134 WEAWNLLGAALDQLGRFDEARRAYRQALELA--------PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP------- 198 (257)
T ss_pred hhhhhHHHHHHHHccChhHHHHHHHHHHHhc--------cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-------
Confidence 7889999999999999999999999999874 3344568899999999999999999998886532
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
.....+..+|+.+...+|++++|.....
T Consensus 199 -~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 199 -AADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred -CCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 3345678899999999999998876544
No 112
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.48 E-value=1.8e-06 Score=88.19 Aligned_cols=102 Identities=12% Similarity=0.068 Sum_probs=90.0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
+|.....+..+|.++...|++++|+.++++++.+ +|.....+.++|.++..+|++++|+.+|++++.+.
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--------~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--- 81 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY--------DPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD--- 81 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---
Confidence 4666788999999999999999999999998875 35556779999999999999999999999998853
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+.....++.+|.+|...|++++|+.++++++++
T Consensus 82 -----p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 82 -----PDDPRPYFHAAECLLALGEPESALKALDLAIEI 114 (135)
T ss_pred -----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 445677899999999999999999999999885
No 113
>PLN02789 farnesyltranstransferase
Probab=98.47 E-value=7.5e-06 Score=96.28 Aligned_cols=183 Identities=11% Similarity=-0.004 Sum_probs=144.1
Q ss_pred HHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH--HHHHHHHHHHHHHHHHh
Q 000589 997 EAKNLVEMGKVQLAEG-LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM--AGAIMQQHKELIINERC 1073 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G-~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~--~eAi~~~~kAL~i~er~ 1073 (1403)
...++...|.++...| ++++++.++.+++.. +|....++++.+.++..+|+. ++++.++.+++.+
T Consensus 70 ~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--------npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~---- 137 (320)
T PLN02789 70 NYTVWHFRRLCLEALDADLEEELDFAEDVAED--------NPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSL---- 137 (320)
T ss_pred hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--------CCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHh----
Confidence 3556777888888888 689999999999987 566777899999999888874 7788999898876
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc---CCH----HHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI---GKM----DTALRY 1146 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~---g~~----deAl~~ 1146 (1403)
+|....++.+.+.++...|+|++|+.++.+++++ ++....+|++.+.++... |.+ ++++.+
T Consensus 138 ----dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--------d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y 205 (320)
T PLN02789 138 ----DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--------DVRNNSAWNQRYFVITRSPLLGGLEAMRDSELKY 205 (320)
T ss_pred ----CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--------CCCchhHHHHHHHHHHhccccccccccHHHHHHH
Confidence 5778889999999999999999999999999976 355567888888888766 333 468888
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Q 000589 1147 LQEALKKNERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKM 1219 (1403)
Q Consensus 1147 lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~----~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~ 1219 (1403)
..+++.+. |....+++.++.++.. .++..+|+..+.+++. ..+....++..|+.+|.
T Consensus 206 ~~~aI~~~--------P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~--------~~~~s~~al~~l~d~~~ 266 (320)
T PLN02789 206 TIDAILAN--------PRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLS--------KDSNHVFALSDLLDLLC 266 (320)
T ss_pred HHHHHHhC--------CCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhc--------ccCCcHHHHHHHHHHHH
Confidence 88888764 5566788888988887 3455667777766554 24455667788888873
No 114
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=98.46 E-value=4.6e-06 Score=89.54 Aligned_cols=114 Identities=18% Similarity=0.193 Sum_probs=89.6
Q ss_pred cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 991 SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 991 ~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
..+....+..++.+|..+...|++++|+.+|++++.+. ++.+..+.++..+|.++..+|++++|+.++++++.+
T Consensus 28 ~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-----~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~- 101 (172)
T PRK02603 28 INKKAKEAFVYYRDGMSAQADGEYAEALENYEEALKLE-----EDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL- 101 (172)
T ss_pred cccHhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh-----hccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-
Confidence 34456678899999999999999999999999999873 233445778999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhcC
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQ-------TELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~-------~~eAl~~l~rAL~l~~~~~g 1117 (1403)
+|.....+.++|.++...|+ ++.|+.++.+|+..+.....
T Consensus 102 -------~p~~~~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 102 -------NPKQPSALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred -------CcccHHHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 35556778888888887665 55555555566555554443
No 115
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=98.46 E-value=4.5e-05 Score=92.13 Aligned_cols=273 Identities=10% Similarity=0.001 Sum_probs=204.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
-..++.-+..+...+.++-|...|..+|+.+ |.--..+...+..--..|..++-..++++|+...
T Consensus 516 ~~tw~~da~~~~k~~~~~carAVya~alqvf--------p~k~slWlra~~~ek~hgt~Esl~Allqkav~~~------- 580 (913)
T KOG0495|consen 516 KSTWLDDAQSCEKRPAIECARAVYAHALQVF--------PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQC------- 580 (913)
T ss_pred HhHHhhhHHHHHhcchHHHHHHHHHHHHhhc--------cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-------
Confidence 5677788889999999999999999998874 3334456666677777899999999999999874
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|..-..+...+.-++..|+...|...+.+|++. +|..-.++..--.+.....+++.|..+|.+|....
T Consensus 581 -pkae~lwlM~ake~w~agdv~~ar~il~~af~~--------~pnseeiwlaavKle~en~e~eraR~llakar~~s--- 648 (913)
T KOG0495|consen 581 -PKAEILWLMYAKEKWKAGDVPAARVILDQAFEA--------NPNSEEIWLAAVKLEFENDELERARDLLAKARSIS--- 648 (913)
T ss_pred -CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHh--------CCCcHHHHHHHHHHhhccccHHHHHHHHHHHhccC---
Confidence 333345566778888999999999999999875 35555566666677788999999999999987642
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
.+..+|+.-+.+...+++.++|+.+++++++.| |..-..+..+|+++ ..+++.+.|...|
T Consensus 649 ------gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f--------p~f~Kl~lmlGQi~------e~~~~ie~aR~aY 708 (913)
T KOG0495|consen 649 ------GTERVWMKSANLERYLDNVEEALRLLEEALKSF--------PDFHKLWLMLGQIE------EQMENIEMAREAY 708 (913)
T ss_pred ------CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC--------CchHHHHHHHhHHH------HHHHHHHHHHHHH
Confidence 456778888899999999999999999999875 34445566777777 8899999999888
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhC
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPH 1316 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~ 1316 (1403)
. ..+...+..+-+.-.+..|- ..|+.-.|...+.++.- .+|.....+ +...+ ...+.
T Consensus 709 ~--~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarl------kNPk~~~lw------------le~Ir--~ElR~ 766 (913)
T KOG0495|consen 709 L--QGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARL------KNPKNALLW------------LESIR--MELRA 766 (913)
T ss_pred H--hccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHh------cCCCcchhH------------HHHHH--HHHHc
Confidence 7 44444444444434444443 67889999999988864 344444422 22233 45677
Q ss_pred CCchhhhHHHHHHHHHHhcCCCC
Q 000589 1317 GLPAQALPPLTQLLNIINSSGAT 1339 (1403)
Q Consensus 1317 g~~~eA~~~l~qaL~i~~s~g~~ 1339 (1403)
|..++|.....+||+-+.+.|..
T Consensus 767 gn~~~a~~lmakALQecp~sg~L 789 (913)
T KOG0495|consen 767 GNKEQAELLMAKALQECPSSGLL 789 (913)
T ss_pred CCHHHHHHHHHHHHHhCCccchh
Confidence 99999999999999998876543
No 116
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.45 E-value=1e-05 Score=101.38 Aligned_cols=220 Identities=15% Similarity=0.078 Sum_probs=171.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
.+...|+..|-+++.+ ++..+.++..||.+|....+...|..+|++|.++ ++..+.+.-.++..
T Consensus 472 K~~~~al~ali~alrl--------d~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adt 535 (1238)
T KOG1127|consen 472 KNSALALHALIRALRL--------DVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADT 535 (1238)
T ss_pred hhHHHHHHHHHHHHhc--------ccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHH
Confidence 4478899999999887 6788999999999999999999999999999887 35566777789999
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
|....+++.|.....++-+.... ......|..+|..|.+.+++..|+..|+.|++.. |....++..
T Consensus 536 yae~~~we~a~~I~l~~~qka~a------~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d--------PkD~n~W~g 601 (1238)
T KOG1127|consen 536 YAEESTWEEAFEICLRAAQKAPA------FACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD--------PKDYNLWLG 601 (1238)
T ss_pred hhccccHHHHHHHHHHHhhhchH------HHHHhhhhhccccccCccchhhHHHHHHHHhcCC--------chhHHHHHH
Confidence 99999999999885554433211 1223445668999999999999999999999854 778889999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh----
Q 000589 1172 LAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---- 1247 (1403)
Q Consensus 1172 LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---- 1247 (1403)
||.+|...|++..|++.|.+|..+ +|...-+.+..+.+. ...|.|.+|+..+. ..+....
T Consensus 602 LGeAY~~sGry~~AlKvF~kAs~L--------rP~s~y~~fk~A~~e------cd~GkYkeald~l~--~ii~~~s~e~~ 665 (1238)
T KOG1127|consen 602 LGEAYPESGRYSHALKVFTKASLL--------RPLSKYGRFKEAVME------CDNGKYKEALDALG--LIIYAFSLERT 665 (1238)
T ss_pred HHHHHHhcCceehHHHhhhhhHhc--------CcHhHHHHHHHHHHH------HHhhhHHHHHHHHH--HHHHHHHHHHH
Confidence 999999999999999999999775 455555666666665 88999999999888 3333222
Q ss_pred hChHHHHHHHHHH----HhCChHHHHHHHHHHHH
Q 000589 1248 AHPDLIHAFQAVA----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1248 ~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~ 1277 (1403)
...+.+.++.+++ .+|=+.+|..+++++++
T Consensus 666 ~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie 699 (1238)
T KOG1127|consen 666 GQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIE 699 (1238)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHH
Confidence 2334555555555 56777778888888777
No 117
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=98.45 E-value=0.00013 Score=84.63 Aligned_cols=277 Identities=16% Similarity=0.095 Sum_probs=190.4
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+....+-|..-+..|+|.+|+.+..++-+. ++.-.-+|..-|..-.++|+++.|-.|+.++-+..
T Consensus 82 rra~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~----- 148 (400)
T COG3071 82 RRARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA----- 148 (400)
T ss_pred HHHHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC-----
Confidence 34666777888889999999999999986554 33445567777888899999999999999987652
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK-- 1153 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l-- 1153 (1403)
..++...+..++.++...|++..|..-..++++. ++.||.. +.-...+|...|+|.+...++.+.-+.
T Consensus 149 --~~~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~-----~pr~~~v---lrLa~r~y~~~g~~~~ll~~l~~L~ka~~ 218 (400)
T COG3071 149 --GDDTLAVELTRARLLLNRRDYPAARENVDQLLEM-----TPRHPEV---LRLALRAYIRLGAWQALLAILPKLRKAGL 218 (400)
T ss_pred --CCchHHHHHHHHHHHHhCCCchhHHHHHHHHHHh-----CcCChHH---HHHHHHHHHHhccHHHHHHHHHHHHHccC
Confidence 1235567788999999999999999999998875 3445544 556678899999999888877543221
Q ss_pred -----------------HHHHhCCC-cH--------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1154 -----------------NERLLGEE-HI--------------QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1154 -----------------~~~~~G~~-~~--------------~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
..+...++ .. ....+...++.-+...|+.++|.+..+++++-.
T Consensus 219 l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~----- 293 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQ----- 293 (400)
T ss_pred CChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhc-----
Confidence 00000000 00 112344567778889999999999999887631
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHHhh
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNAAL 1280 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~~~ 1280 (1403)
.++. |..++.+ ..-++...-+...+ +.+.-.++.|....++..|+ ..+.+.+|..+++.|+....
T Consensus 294 -~D~~-------L~~~~~~----l~~~d~~~l~k~~e--~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~ 359 (400)
T COG3071 294 -WDPR-------LCRLIPR----LRPGDPEPLIKAAE--KWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRP 359 (400)
T ss_pred -cChh-------HHHHHhh----cCCCCchHHHHHHH--HHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCC
Confidence 2222 2222211 23345555454444 55555556676666666666 88999999999999987332
Q ss_pred cCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1281 LGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1281 ~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.. .-....+..+..+|+..+|.+.++.+|.+..+
T Consensus 360 s~---------------------~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 360 SA---------------------SDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred Ch---------------------hhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 10 11222344678889999999999999977665
No 118
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=98.44 E-value=3.5e-05 Score=93.56 Aligned_cols=234 Identities=17% Similarity=0.177 Sum_probs=173.5
Q ss_pred HHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 000589 981 ILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060 (1403)
Q Consensus 981 I~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi 1060 (1403)
+..+.++++. .+.+ ++.+-..|..+...|+.++|..+...++.. ++...-|+.-+|.++....+|++|+
T Consensus 27 LK~~~~iL~k-~~eH--geslAmkGL~L~~lg~~~ea~~~vr~glr~--------d~~S~vCwHv~gl~~R~dK~Y~eai 95 (700)
T KOG1156|consen 27 LKLIKQILKK-FPEH--GESLAMKGLTLNCLGKKEEAYELVRLGLRN--------DLKSHVCWHVLGLLQRSDKKYDEAI 95 (700)
T ss_pred HHHHHHHHHh-CCcc--chhHHhccchhhcccchHHHHHHHHHHhcc--------CcccchhHHHHHHHHhhhhhHHHHH
Confidence 3344455552 2333 555666899999999999999999998874 3445568999999999999999999
Q ss_pred HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1061 MQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1061 ~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
.+|+.|+.+ .++..+.+..|+.+...+++++.....-.+.+++ .|..-..|..+|..+...|++
T Consensus 96 Kcy~nAl~~--------~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--------~~~~ra~w~~~Avs~~L~g~y 159 (700)
T KOG1156|consen 96 KCYRNALKI--------EKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--------RPSQRASWIGFAVAQHLLGEY 159 (700)
T ss_pred HHHHHHHhc--------CCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--------hhhhHHHHHHHHHHHHHHHHH
Confidence 999999998 4677889999999999999999988887777765 356666788999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR 1220 (1403)
Q Consensus 1141 deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r 1220 (1403)
..|...++.-.................+......+....|.+++|++++..--. .....++....+
T Consensus 160 ~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~--------------~i~Dkla~~e~k 225 (700)
T KOG1156|consen 160 KMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEK--------------QIVDKLAFEETK 225 (700)
T ss_pred HHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhh--------------HHHHHHHHhhhH
Confidence 999999888776654211112223344455556677778887777776654321 122344444455
Q ss_pred HHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1221 ELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1221 ~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
+..+..++++++|...+. .++..+|+....+..+-
T Consensus 226 a~l~~kl~~lEeA~~~y~-----~Ll~rnPdn~~Yy~~l~ 260 (700)
T KOG1156|consen 226 ADLLMKLGQLEEAVKVYR-----RLLERNPDNLDYYEGLE 260 (700)
T ss_pred HHHHHHHhhHHhHHHHHH-----HHHhhCchhHHHHHHHH
Confidence 566689999999999998 77777787776665554
No 119
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.43 E-value=1.4e-05 Score=83.38 Aligned_cols=136 Identities=23% Similarity=0.121 Sum_probs=109.6
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+...+.........++...+...+.+.+.- .+..+....+...+|.+++..|++++|+..|++++... .
T Consensus 10 ~a~~~y~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~ 79 (145)
T PF09976_consen 10 QASALYEQALQALQAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----P 79 (145)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----C
Confidence 4556666666677889999888877776665 34556677889999999999999999999999998852 3
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
+......+...||.++...|+|++|+..++.. .+.+.....+..+|.+|...|++++|+..|++||
T Consensus 80 d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 80 DPELKPLARLRLARILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 44445667889999999999999999998662 2334556678889999999999999999999885
No 120
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.40 E-value=2.1e-05 Score=96.52 Aligned_cols=167 Identities=21% Similarity=0.259 Sum_probs=141.9
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
.+.|...||.-.=-.+|++|.++...+ .+.+.+.+|...+..++|.+|..+++.++++ .|.....
T Consensus 457 ~~lyc~LGDv~~d~s~yEkawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~--------nplq~~~ 521 (777)
T KOG1128|consen 457 PRLYCLLGDVLHDPSLYEKAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEI--------NPLQLGT 521 (777)
T ss_pred chhHHHhhhhccChHHHHHHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhc--------CccchhH
Confidence 567777888888888888888886543 4557778888888899999999999999998 4778889
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
|+++|.+..+.++++.|.++|.+++.+ .|+.+.+|+|++..|...++-.+|...+++|++... .
T Consensus 522 wf~~G~~ALqlek~q~av~aF~rcvtL--------~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~--------~ 585 (777)
T KOG1128|consen 522 WFGLGCAALQLEKEQAAVKAFHRCVTL--------EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY--------Q 585 (777)
T ss_pred HHhccHHHHHHhhhHHHHHHHHHHhhc--------CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC--------C
Confidence 999999999999999999999999965 477788999999999999999999999999998651 2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGE 1202 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~ 1202 (1403)
....+.|.-.+..+.|.+++|+..|.+.+.+.+....+
T Consensus 586 ~w~iWENymlvsvdvge~eda~~A~~rll~~~~~~~d~ 623 (777)
T KOG1128|consen 586 HWQIWENYMLVSVDVGEFEDAIKAYHRLLDLRKKYKDD 623 (777)
T ss_pred CCeeeechhhhhhhcccHHHHHHHHHHHHHhhhhcccc
Confidence 23456777788899999999999999999887665433
No 121
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.38 E-value=2.5e-06 Score=102.25 Aligned_cols=97 Identities=18% Similarity=0.223 Sum_probs=88.1
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+...|..++..|+|++|+.+|.+|+.+ .|....++.++|.+|..+|++++|+..+++|+.+ .
T Consensus 3 ~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~ 66 (356)
T PLN03088 3 KDLEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------D 66 (356)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------C
Confidence 34677899999999999999999999997 4556788999999999999999999999999998 3
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|....+|+++|.+|+.+|+|++|+.+|++++.+
T Consensus 67 P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l 99 (356)
T PLN03088 67 PSLAKAYLRKGTACMKLEEYQTAKAALEKGASL 99 (356)
T ss_pred cCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 666788999999999999999999999999986
No 122
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.38 E-value=2.2e-06 Score=96.03 Aligned_cols=101 Identities=22% Similarity=0.324 Sum_probs=92.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
..+..+-.-|.-++..++|.+|+..|.+||.+ .|..+..|.|.|.+|.++|.|+.|++-++.|+.+
T Consensus 79 ~~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l--------~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~i------ 144 (304)
T KOG0553|consen 79 ALAESLKNEGNKLMKNKDYQEAVDKYTEAIEL--------DPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSI------ 144 (304)
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhc--------CCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhc------
Confidence 45566677788889999999999999999998 4777889999999999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+|....+|..||.+|..+|++.+|++.|++||++.
T Consensus 145 --Dp~yskay~RLG~A~~~~gk~~~A~~aykKaLeld 179 (304)
T KOG0553|consen 145 --DPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELD 179 (304)
T ss_pred --ChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccC
Confidence 68999999999999999999999999999999975
No 123
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.37 E-value=4.5e-06 Score=82.72 Aligned_cols=104 Identities=14% Similarity=0.152 Sum_probs=90.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..++.+|..+..+|++++|+..|.+++.. .++++....+++.+|.+++..|++++|+.++++++... ++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~ 71 (119)
T TIGR02795 2 EEAYYDAALLVLKAGDYADAIQAFQAFLKK-----YPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PK 71 (119)
T ss_pred cHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-----CCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CC
Confidence 457889999999999999999999999876 24455567889999999999999999999999998763 44
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
++....++..+|.++..+|++++|+.++.+++..
T Consensus 72 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 72 SPKAPDALLKLGMSLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred CCcccHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence 5556778999999999999999999999999976
No 124
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=98.36 E-value=4.4e-05 Score=84.35 Aligned_cols=169 Identities=15% Similarity=0.105 Sum_probs=127.8
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCC
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~ 1118 (1403)
....++..|..++..|+|.+|+..|++.+..+ +.++....+...+|.+++..|++++|+..+++.+... +
T Consensus 4 ~~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~-----P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-----P 73 (203)
T PF13525_consen 4 TAEALYQKALEALQQGDYEEAIKLFEKLIDRY-----PNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-----P 73 (203)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH------T
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----C
Confidence 45678899999999999999999999998875 5677888999999999999999999999999999865 6
Q ss_pred CCHHHHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHH
Q 000589 1119 DHPDVAATFINVAMMYQDIG-----------KMDTALRYLQEALKKNERLLGEEHI--------------QTAVCYHALA 1173 (1403)
Q Consensus 1119 d~p~~a~~~~nLA~iy~~~g-----------~~deAl~~lekAL~l~~~~~G~~~~--------------~~a~~~~~LA 1173 (1403)
+|+....+++.+|.++..+. ...+|+..|+..++.. |+++ ..+.--..+|
T Consensus 74 ~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~y-----P~S~y~~~A~~~l~~l~~~la~~e~~ia 148 (203)
T PF13525_consen 74 NSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRY-----PNSEYAEEAKKRLAELRNRLAEHELYIA 148 (203)
T ss_dssp T-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH------TTSTTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHC-----cCchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 78888999999999876543 3346777777766554 2222 1233345678
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
..|...|.+..|+..++.+++-+ ++.+...+++..|...| ...|....|
T Consensus 149 ~~Y~~~~~y~aA~~r~~~v~~~y-----p~t~~~~~al~~l~~~y------~~l~~~~~a 197 (203)
T PF13525_consen 149 RFYYKRGKYKAAIIRFQYVIENY-----PDTPAAEEALARLAEAY------YKLGLKQAA 197 (203)
T ss_dssp HHHHCTT-HHHHHHHHHHHHHHS-----TTSHHHHHHHHHHHHHH------HHTT-HHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH------HHhCChHHH
Confidence 99999999999999999988864 45667777888888777 667776643
No 125
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.35 E-value=5.4e-06 Score=82.11 Aligned_cols=104 Identities=18% Similarity=0.205 Sum_probs=90.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
..++.+|..+...|++++|+.+|.+++... ++++....+++.+|.++...|++++|+.+|++++... +++
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----p~~ 72 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKY-----PKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-----PKS 72 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-----CCC
Confidence 568899999999999999999999998752 4445557789999999999999999999999999753 455
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+....++..+|.++...|++++|+.+++++++..
T Consensus 73 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 73 PKAPDALLKLGMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred CcccHHHHHHHHHHHHhCChHHHHHHHHHHHHHC
Confidence 5567789999999999999999999999999864
No 126
>PLN03077 Protein ECB2; Provisional
Probab=98.35 E-value=4.6e-05 Score=102.33 Aligned_cols=230 Identities=13% Similarity=0.036 Sum_probs=119.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+..+...|...|++++|..+|.+... + ...+|+.+...|.+.|++++|+.+|++....- ..++
T Consensus 323 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~-------~----d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g---~~Pd 388 (857)
T PLN03077 323 VSVCNSLIQMYLSLGSWGEAEKVFSRMET-------K----DAVSWTAMISGYEKNGLPDKALETYALMEQDN---VSPD 388 (857)
T ss_pred hHHHHHHHHHHHhcCCHHHHHHHHhhCCC-------C----CeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhC---CCCC
Confidence 44555566666666666666666655311 1 12345566666666666666666666543210 0011
Q ss_pred -------------------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 000589 1078 -------------------------------HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT 1126 (1403)
Q Consensus 1078 -------------------------------~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~ 1126 (1403)
......+++.|...|.+.|++++|.+.|++... ++ ..+
T Consensus 389 ~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~d-~vs 457 (857)
T PLN03077 389 EITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----------KD-VIS 457 (857)
T ss_pred ceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------CC-eee
Confidence 011233455566666666666666666655321 11 234
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHH-------------------------------HHHHHHHHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA-------------------------------VCYHALAIA 1175 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a-------------------------------~~~~~LA~~ 1175 (1403)
|+.+...|...|++++|+.+|++.+.. ..++..... ..+..|-..
T Consensus 458 ~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~ 533 (857)
T PLN03077 458 WTSIIAGLRLNNRCFEALIFFRQMLLT----LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDL 533 (857)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHH
Confidence 666666777777777777777766431 111111000 011233355
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHH-
Q 000589 1176 FNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIH- 1254 (1403)
Q Consensus 1176 y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~- 1254 (1403)
|.+.|++++|...|+.. . ....+++.+...| ...|+.++|+.+++ +..+ ....|+...
T Consensus 534 y~k~G~~~~A~~~f~~~---------~---~d~~s~n~lI~~~------~~~G~~~~A~~lf~--~M~~-~g~~Pd~~T~ 592 (857)
T PLN03077 534 YVRCGRMNYAWNQFNSH---------E---KDVVSWNILLTGY------VAHGKGSMAVELFN--RMVE-SGVNPDEVTF 592 (857)
T ss_pred HHHcCCHHHHHHHHHhc---------C---CChhhHHHHHHHH------HHcCCHHHHHHHHH--HHHH-cCCCCCcccH
Confidence 55666666665555432 0 1123444454455 67788888888887 3221 112343332
Q ss_pred --HHHHHHHhCChHHHHHHHHHHHH
Q 000589 1255 --AFQAVAAAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1255 --a~~~La~~G~~~eA~~~~ekAL~ 1277 (1403)
.+...+..|..++|..+|+...+
T Consensus 593 ~~ll~a~~~~g~v~ea~~~f~~M~~ 617 (857)
T PLN03077 593 ISLLCACSRSGMVTQGLEYFHSMEE 617 (857)
T ss_pred HHHHHHHhhcChHHHHHHHHHHHHH
Confidence 22222377888888888887764
No 127
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.33 E-value=3e-05 Score=80.82 Aligned_cols=123 Identities=20% Similarity=0.122 Sum_probs=99.8
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
..++...+...+++.+.- .++++....+...+|.+++..|++++|...|++++... ++......+...||
T Consensus 23 ~~~~~~~~~~~~~~l~~~-----~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~-----~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 23 QAGDPAKAEAAAEQLAKD-----YPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANA-----PDPELKPLARLRLA 92 (145)
T ss_pred HCCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC-----CCHHHHHHHHHHHH
Confidence 578888887777766654 24455667888999999999999999999999998742 34455567788999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.++...|++++|+..++.. .........+..+|.+|...|++++|+..|++|+
T Consensus 93 ~~~~~~~~~d~Al~~L~~~---------~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQI---------PDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHcCCHHHHHHHHHhc---------cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 9999999999999999652 1234556678899999999999999999999874
No 128
>PLN03077 Protein ECB2; Provisional
Probab=98.33 E-value=0.0001 Score=98.98 Aligned_cols=244 Identities=12% Similarity=0.023 Sum_probs=148.6
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
..+++.|...|.+.|++++|...|++... + ...+|+.+...|...|++++|+.+|++.+.- ..++
T Consensus 424 ~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----------~-d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~----~~pd 488 (857)
T PLN03077 424 VVVANALIEMYSKCKCIDKALEVFHNIPE----------K-DVISWTSIIAGLRLNNRCFEALIFFRQMLLT----LKPN 488 (857)
T ss_pred hHHHHHHHHHHHHcCCHHHHHHHHHhCCC----------C-CeeeHHHHHHHHHHCCCHHHHHHHHHHHHhC----CCCC
Confidence 34567777888888888888888775321 1 2346888889999999999999999998631 1122
Q ss_pred CHHHH-------------------------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q 000589 1120 HPDVA-------------------------------ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC 1168 (1403)
Q Consensus 1120 ~p~~a-------------------------------~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~ 1168 (1403)
..... ..++.|-.+|.+.|++++|...|++. .....+
T Consensus 489 ~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~------------~~d~~s 556 (857)
T PLN03077 489 SVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH------------EKDVVS 556 (857)
T ss_pred HhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc------------CCChhh
Confidence 11111 01123346677777777777777653 113457
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA 1248 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~ 1248 (1403)
|..|...|...|+.++|+++|++..+. -+.++... +..+-..+ ...|..++|..++. +..+....
T Consensus 557 ~n~lI~~~~~~G~~~~A~~lf~~M~~~---g~~Pd~~T----~~~ll~a~------~~~g~v~ea~~~f~--~M~~~~gi 621 (857)
T PLN03077 557 WNILLTGYVAHGKGSMAVELFNRMVES---GVNPDEVT----FISLLCAC------SRSGMVTQGLEYFH--SMEEKYSI 621 (857)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCccc----HHHHHHHH------hhcChHHHHHHHHH--HHHHHhCC
Confidence 888999999999999999999987642 22233222 22232334 67799999999998 33333333
Q ss_pred ChHH--HHH-HHHHHHhCChHHHHHHHHHHHHHhhcCCCCccc------------cchHHHHHHHHHHHHHH-------H
Q 000589 1249 HPDL--IHA-FQAVAAAGGSGNSGASANNSLNAALLGETLPRG------------RGFDERAARAAAEVRKK-------A 1306 (1403)
Q Consensus 1249 ~p~~--~~a-~~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~~------------~~~~era~~a~~e~r~l-------~ 1306 (1403)
.|+. ... ...+++.|++++|...+++.- ..|.. ....+.++.+.....++ .
T Consensus 622 ~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~-------~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y 694 (857)
T PLN03077 622 TPNLKHYACVVDLLGRAGKLTEAYNFINKMP-------ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYY 694 (857)
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHCC-------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchH
Confidence 4442 222 233338899999999988741 11111 11112222221111111 1
Q ss_pred HHhhHHHhhCCCchhhhHHHHHHHHH
Q 000589 1307 VAKGLLIRPHGLPAQALPPLTQLLNI 1332 (1403)
Q Consensus 1307 ~a~G~~~~~~g~~~eA~~~l~qaL~i 1332 (1403)
...+.+|...|++++|....+...+.
T Consensus 695 ~ll~n~ya~~g~~~~a~~vr~~M~~~ 720 (857)
T PLN03077 695 ILLCNLYADAGKWDEVARVRKTMREN 720 (857)
T ss_pred HHHHHHHHHCCChHHHHHHHHHHHHc
Confidence 12256788899999998777665543
No 129
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.33 E-value=5.1e-05 Score=91.29 Aligned_cols=204 Identities=18% Similarity=0.100 Sum_probs=128.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.++.--..+...|+|++|+....+.+.+ +++.+ .+.+.--.++.+.+.|++|+...++-...
T Consensus 14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~-----~pdd~---~a~~cKvValIq~~ky~~ALk~ikk~~~~---------- 75 (652)
T KOG2376|consen 14 ALLTDLNRHGKNGEYEEAVKTANKILSI-----VPDDE---DAIRCKVVALIQLDKYEDALKLIKKNGAL---------- 75 (652)
T ss_pred HHHHHHHHhccchHHHHHHHHHHHHHhc-----CCCcH---hhHhhhHhhhhhhhHHHHHHHHHHhcchh----------
Confidence 3444444556677788877777776665 23333 33333445566777777777443332111
Q ss_pred hHHHHH-HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH----
Q 000589 1080 DTAHSY-GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN---- 1154 (1403)
Q Consensus 1080 ~~~~a~-~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~---- 1154 (1403)
.....+ +.-|.|++++++.++|+..+. .+ ..+ ...++..-|.+++++|+|++|+..|+..++-.
T Consensus 76 ~~~~~~~fEKAYc~Yrlnk~Dealk~~~-~~-------~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~ 144 (652)
T KOG2376|consen 76 LVINSFFFEKAYCEYRLNKLDEALKTLK-GL-------DRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQ 144 (652)
T ss_pred hhcchhhHHHHHHHHHcccHHHHHHHHh-cc-------ccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchH
Confidence 111122 566778888888888887776 11 111 22345556777888888888888877653210
Q ss_pred -------------------HHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH-------HH
Q 000589 1155 -------------------ERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR-------TK 1208 (1403)
Q Consensus 1155 -------------------~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~-------t~ 1208 (1403)
.+........+-..++|.|.++...|+|.+|++.+++|+++.++.+..++.. ..
T Consensus 145 d~~~r~nl~a~~a~l~~~~~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~ 224 (652)
T KOG2376|consen 145 DEERRANLLAVAAALQVQLLQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELN 224 (652)
T ss_pred HHHHHHHHHHHHHhhhHHHHHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHH
Confidence 0011111223556789999999999999999999999999999887654332 22
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+...|+.++ ..+|+..+|..+|.
T Consensus 225 ~IrvQlayVl------Q~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 225 PIRVQLAYVL------QLQGQTAEASSIYV 248 (652)
T ss_pred HHHHHHHHHH------HHhcchHHHHHHHH
Confidence 3344455555 88999999999887
No 130
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.32 E-value=0.00015 Score=78.86 Aligned_cols=223 Identities=12% Similarity=-0.000 Sum_probs=161.8
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..+..|...+..|....+|++|-..+.+|...++..-. -...+.+|-..|.+...+..+.|+..+|++|..++.+..
T Consensus 29 gaas~yekAAvafRnAk~feKakdcLlkA~~~yEnnrs--lfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~G- 105 (308)
T KOG1585|consen 29 GAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRS--LFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECG- 105 (308)
T ss_pred hhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccc--HHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC-
Confidence 34566677788888999999999999999988876432 234578899999999999999999999999999998763
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
+|+++..-..-|--....-++++|+.+|++++.+.+.- .........+...+.+|....+|++|-..+.+-..+..
T Consensus 106 --spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~--dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~ 181 (308)
T KOG1585|consen 106 --SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEED--DRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAAD 181 (308)
T ss_pred --CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhcc--chHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHH
Confidence 45555444455555667889999999999999987652 22334456778889999999999999998887666654
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN 1235 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~ 1235 (1403)
..-. .+.....+..+-.+|....+|..|...++...++ .+-..++-..++.+|-..| .+|+.++...
T Consensus 182 ~~~~--y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qi----p~f~~sed~r~lenLL~ay-------d~gD~E~~~k 248 (308)
T KOG1585|consen 182 KCDA--YNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQI----PAFLKSEDSRSLENLLTAY-------DEGDIEEIKK 248 (308)
T ss_pred HHhh--cccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcC----ccccChHHHHHHHHHHHHh-------ccCCHHHHHH
Confidence 4321 1223334555556677778999999999987765 2223444455555655554 5677776655
Q ss_pred HHH
Q 000589 1236 AAS 1238 (1403)
Q Consensus 1236 ~l~ 1238 (1403)
.+.
T Consensus 249 vl~ 251 (308)
T KOG1585|consen 249 VLS 251 (308)
T ss_pred HHc
Confidence 544
No 131
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.30 E-value=0.00015 Score=89.13 Aligned_cols=149 Identities=18% Similarity=0.150 Sum_probs=85.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH---hcCCCChh
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER---CLGLDHPD 1080 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er---~lg~d~p~ 1080 (1403)
+-.+|..+|.+++|.++.+. .+....-..|++.|..+...++.+.|++||+++-...-. .+.. .|.
T Consensus 832 lNKlyQs~g~w~eA~eiAE~----------~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e-~p~ 900 (1416)
T KOG3617|consen 832 LNKLYQSQGMWSEAFEIAET----------KDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKE-YPK 900 (1416)
T ss_pred HHHHHHhcccHHHHHHHHhh----------ccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHh-ChH
Confidence 44556666666666554432 122234568999999999999999999999986322111 1111 111
Q ss_pred HH----------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1081 TA----------HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1081 ~~----------~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.+ ..|..-|.++...|+.+.|+.+|..|-.. +.+-.+..-+|+.++|-+..++.
T Consensus 901 ~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----------------fs~VrI~C~qGk~~kAa~iA~es 964 (1416)
T KOG3617|consen 901 QIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----------------FSMVRIKCIQGKTDKAARIAEES 964 (1416)
T ss_pred HHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh----------------hhheeeEeeccCchHHHHHHHhc
Confidence 11 23445577777788888888887777543 22333334444444444433322
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
- ...+.+.||+.|...|++.+|+.+|.+|
T Consensus 965 g-------------d~AAcYhlaR~YEn~g~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 965 G-------------DKAACYHLARMYENDGDVVKAVKFFTRA 993 (1416)
T ss_pred c-------------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 1 1123455666666666666666666554
No 132
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=98.30 E-value=8.3e-05 Score=84.37 Aligned_cols=173 Identities=15% Similarity=0.088 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...++..|..++..|+|++|+..|++++... +.++....+..+||.+|+..+++++|+.++++.+... ++
T Consensus 32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~y-----P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-----P~ 101 (243)
T PRK10866 32 PSEIYATAQQKLQDGNWKQAITQLEALDNRY-----PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-----PT 101 (243)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-----CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-----cC
Confidence 4557788889999999999999999998864 4567777888999999999999999999999999874 78
Q ss_pred CHHHHHHHHHHHHHHHHcC---------------C---HHHHHHHHHHHHHHHHHHhCCCcH--------------HHHH
Q 000589 1120 HPDVAATFINVAMMYQDIG---------------K---MDTALRYLQEALKKNERLLGEEHI--------------QTAV 1167 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g---------------~---~deAl~~lekAL~l~~~~~G~~~~--------------~~a~ 1167 (1403)
||....+++.+|.++..++ + ..+|+..|++.++.. |++. ..+.
T Consensus 102 ~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y-----P~S~ya~~A~~rl~~l~~~la~ 176 (243)
T PRK10866 102 HPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY-----PNSQYTTDATKRLVFLKDRLAK 176 (243)
T ss_pred CCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC-----cCChhHHHHHHHHHHHHHHHHH
Confidence 8999999999998875554 2 245666666666543 2222 1223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1168 CYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1168 ~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
--..+|..|...|.|..|+.-++.+++-+ ++.+...+++..+...| ...|..++|.....
T Consensus 177 ~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Y-----p~t~~~~eal~~l~~ay------~~lg~~~~a~~~~~ 236 (243)
T PRK10866 177 YELSVAEYYTKRGAYVAVVNRVEQMLRDY-----PDTQATRDALPLMENAY------RQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHHHHHHHcCchHHHHHHHHHHHHHC-----CCCchHHHHHHHHHHHH------HHcCChHHHHHHHH
Confidence 34567889999999999999999988754 45677888888888887 78888888876554
No 133
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.28 E-value=5.7e-06 Score=99.19 Aligned_cols=96 Identities=18% Similarity=0.189 Sum_probs=86.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+...|..++..|+|++|+.+|++|+.+ .|....+|.++|.+|..+|++++|+.++++|+.+ .|.
T Consensus 5 l~~~a~~a~~~~~~~~Ai~~~~~Al~~--------~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l--------~P~ 68 (356)
T PLN03088 5 LEDKAKEAFVDDDFALAVDLYTQAIDL--------DPNNAELYADRAQANIKLGNFTEAVADANKAIEL--------DPS 68 (356)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--------CcC
Confidence 456788899999999999999999987 3566778999999999999999999999999986 355
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+++++|.+|..+|+|++|+.+|++++++.
T Consensus 69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~ 100 (356)
T PLN03088 69 LAKAYLRKGTACMKLEEYQTAKAALEKGASLA 100 (356)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 66789999999999999999999999999875
No 134
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.24 E-value=2.2e-05 Score=78.74 Aligned_cols=102 Identities=26% Similarity=0.256 Sum_probs=83.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+.+.+|.++-.+|+.++|+.+|++++.. |.+.+....++..+|..+..+|++++|+..+++++.-. ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46788999999999999999999999874 56667777899999999999999999999999887532 333
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
+........++.++...|++++|+.++..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33556667788999999999999999887775
No 135
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.24 E-value=4e-05 Score=99.32 Aligned_cols=213 Identities=9% Similarity=-0.058 Sum_probs=148.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+...|....++..|...|...+++++|+..++.++.. +|..+..|+.+|.+++..+++.+|... +++.+.
T Consensus 24 ~~~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--------~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~ 93 (906)
T PRK14720 24 NNYSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKE--------HKKSISALYISGILSLSRRPLNDSNLL--NLIDSF 93 (906)
T ss_pred ccCCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCcceehHHHHHHHHHhhcchhhhhhh--hhhhhc
Confidence 4557788899999999999999999999999988876 588889999999999999999888776 555443
Q ss_pred Hhhc-----------CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCC
Q 000589 1113 SLSS-----------GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGA 1181 (1403)
Q Consensus 1113 ~~~~-----------g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd 1181 (1403)
.... -.+++..-.+++.||.||..+|++++|...|++++++. +..+.++.++|..|... +
T Consensus 94 ~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--------~~n~~aLNn~AY~~ae~-d 164 (906)
T PRK14720 94 SQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--------RDNPEIVKKLATSYEEE-D 164 (906)
T ss_pred ccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--------cccHHHHHHHHHHHHHh-h
Confidence 2210 01233444688999999999999999999999999864 66788999999999999 9
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-
Q 000589 1182 FKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA- 1260 (1403)
Q Consensus 1182 ~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La- 1260 (1403)
+++|++++.+|+..+-..- ......-.|...+. ....+++.-..+.+ +.+.... .-.....+.-|-
T Consensus 165 L~KA~~m~~KAV~~~i~~k----q~~~~~e~W~k~~~------~~~~d~d~f~~i~~--ki~~~~~-~~~~~~~~~~l~~ 231 (906)
T PRK14720 165 KEKAITYLKKAIYRFIKKK----QYVGIEEIWSKLVH------YNSDDFDFFLRIER--KVLGHRE-FTRLVGLLEDLYE 231 (906)
T ss_pred HHHHHHHHHHHHHHHHhhh----cchHHHHHHHHHHh------cCcccchHHHHHHH--HHHhhhc-cchhHHHHHHHHH
Confidence 9999999999998754321 11111112333222 23333333232222 1111111 111112222221
Q ss_pred ---HhCChHHHHHHHHHHHH
Q 000589 1261 ---AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1261 ---~~G~~~eA~~~~ekAL~ 1277 (1403)
...++++++..++.+|+
T Consensus 232 ~y~~~~~~~~~i~iLK~iL~ 251 (906)
T PRK14720 232 PYKALEDWDEVIYILKKILE 251 (906)
T ss_pred HHhhhhhhhHHHHHHHHHHh
Confidence 66889999999999998
No 136
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.23 E-value=4.9e-05 Score=95.60 Aligned_cols=225 Identities=12% Similarity=0.053 Sum_probs=170.5
Q ss_pred hhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHH
Q 000589 984 LQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQ 1063 (1403)
Q Consensus 984 l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~ 1063 (1403)
+...++.+.-+...|..+-.+|.+|...-+...|..+|.+|.++ ++..+.+.-.++..|....+++.|....
T Consensus 478 l~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--------Datdaeaaaa~adtyae~~~we~a~~I~ 549 (1238)
T KOG1127|consen 478 LHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--------DATDAEAAAASADTYAEESTWEEAFEIC 549 (1238)
T ss_pred HHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--------CchhhhhHHHHHHHhhccccHHHHHHHH
Confidence 33445666666777888888999999988999999999999988 6677888888999999999999999884
Q ss_pred HHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Q 000589 1064 HKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA 1143 (1403)
Q Consensus 1064 ~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA 1143 (1403)
-.+-+... -......+..+|.+|...+++..|+..|+.|+.. +|....+|..||.+|...|+|..|
T Consensus 550 l~~~qka~------a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~--------dPkD~n~W~gLGeAY~~sGry~~A 615 (1238)
T KOG1127|consen 550 LRAAQKAP------AFACKENWVQRGPYYLEAHNLHGAVCEFQSALRT--------DPKDYNLWLGLGEAYPESGRYSHA 615 (1238)
T ss_pred HHHhhhch------HHHHHhhhhhccccccCccchhhHHHHHHHHhcC--------CchhHHHHHHHHHHHHhcCceehH
Confidence 43332211 0122344556999999999999999999999964 688889999999999999999999
Q ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Q 000589 1144 LRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQ 1223 (1403)
Q Consensus 1144 l~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~ 1223 (1403)
++.|.+|..+. |......+..|.....+|+|.+|+..+...+..+..... .....++++..++..+
T Consensus 616 lKvF~kAs~Lr--------P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~-~q~gLaE~~ir~akd~----- 681 (1238)
T KOG1127|consen 616 LKVFTKASLLR--------PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERT-GQNGLAESVIRDAKDS----- 681 (1238)
T ss_pred HHhhhhhHhcC--------cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHH-----
Confidence 99999998765 566677888999999999999999999988876543211 1112333333333333
Q ss_pred HHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1224 MNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1224 ~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
..+|-+.+|..+++ ++++.+.
T Consensus 682 -~~~gf~~kavd~~e--ksie~f~ 702 (1238)
T KOG1127|consen 682 -AITGFQKKAVDFFE--KSIESFI 702 (1238)
T ss_pred -HHHHHhhhhhHHHH--HHHHHHH
Confidence 55566666666666 6655543
No 137
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.21 E-value=0.0007 Score=73.86 Aligned_cols=222 Identities=15% Similarity=0.007 Sum_probs=155.1
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.++-...+..|..-+..|....+|++|...+.+|+..++.- ..-...+.+|-..|.+...+..+.++..+|++|..++
T Consensus 24 kad~dgaas~yekAAvafRnAk~feKakdcLlkA~~~yEnn--rslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 24 KADWDGAASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENN--RSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELY 101 (308)
T ss_pred CCCchhhHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 34555567778888888999999999999999999887753 2223457788899999999999999999999999998
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
... | .|+.+..-..-|--..+.-+.++|+++|++++.+.+. +.........+...+++|.....|++|-..+.+-
T Consensus 102 ~E~-G--spdtAAmaleKAak~lenv~Pd~AlqlYqralavve~--~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe 176 (308)
T KOG1585|consen 102 VEC-G--SPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEE--DDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKE 176 (308)
T ss_pred HHh-C--CcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc--cchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHh
Confidence 775 3 3454444444455556788999999999999999865 2223344566788899999999999999888887
Q ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh-hChHHHHHHHHHH---HhCChHHH
Q 000589 1193 YDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK-AHPDLIHAFQAVA---AAGGSGNS 1268 (1403)
Q Consensus 1193 l~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~-~~p~~~~a~~~La---~~G~~~eA 1268 (1403)
..+..+.-.-..+. ..+..+-.+| ....+|.+|..+++ ..-.+-. ..++...++.+|- ..|+.++.
T Consensus 177 ~~~~~~~~~y~~~~--k~~va~ilv~------L~~~Dyv~aekc~r--~~~qip~f~~sed~r~lenLL~ayd~gD~E~~ 246 (308)
T KOG1585|consen 177 GVAADKCDAYNSQC--KAYVAAILVY------LYAHDYVQAEKCYR--DCSQIPAFLKSEDSRSLENLLTAYDEGDIEEI 246 (308)
T ss_pred hhHHHHHhhcccHH--HHHHHHHHHH------hhHHHHHHHHHHhc--chhcCccccChHHHHHHHHHHHHhccCCHHHH
Confidence 76665542222221 1122222233 45678888888877 3222222 3455566666664 67777765
Q ss_pred HHH
Q 000589 1269 GAS 1271 (1403)
Q Consensus 1269 ~~~ 1271 (1403)
...
T Consensus 247 ~kv 249 (308)
T KOG1585|consen 247 KKV 249 (308)
T ss_pred HHH
Confidence 443
No 138
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.21 E-value=8.5e-05 Score=91.43 Aligned_cols=213 Identities=15% Similarity=0.073 Sum_probs=150.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-----hcCCCChhHHHHHH-----HHHHHHHHCCCHHHHHHHHH
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER-----CLGLDHPDTAHSYG-----NMALFYHGLNQTELALRHMS 1106 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er-----~lg~d~p~~~~a~~-----nLA~~~~~~G~~~eAl~~l~ 1106 (1403)
|.....-..+|.++...|-..+|+..|++.-..... ..|..+......+. +.+..|..+||...=-.+|+
T Consensus 395 pp~Wq~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~lek~~d~~lyc~LGDv~~d~s~yE 474 (777)
T KOG1128|consen 395 PPIWQLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELEKDPDPRLYCLLGDVLHDPSLYE 474 (777)
T ss_pred CCcchHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhcCCCcchhHHHhhhhccChHHHH
Confidence 344555667888888888888888877764322110 11211100000000 12344555555555556666
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHH
Q 000589 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSH 1186 (1403)
Q Consensus 1107 rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi 1186 (1403)
+|.++.+.. .+.+...+|......++|.+|.++++.++++. +....+|+.+|.++.+.+++..|.
T Consensus 475 kawElsn~~-------sarA~r~~~~~~~~~~~fs~~~~hle~sl~~n--------plq~~~wf~~G~~ALqlek~q~av 539 (777)
T KOG1128|consen 475 KAWELSNYI-------SARAQRSLALLILSNKDFSEADKHLERSLEIN--------PLQLGTWFGLGCAALQLEKEQAAV 539 (777)
T ss_pred HHHHHhhhh-------hHHHHHhhccccccchhHHHHHHHHHHHhhcC--------ccchhHHHhccHHHHHHhhhHHHH
Confidence 666654332 34455666666677899999999999999876 566788999999999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH-HhCCh
Q 000589 1187 QHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA-AAGGS 1265 (1403)
Q Consensus 1187 ~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La-~~G~~ 1265 (1403)
++|..+..+ .|+..++.++++..| ...++..+|...+. +|+..-..|+....-|..++ ..|.+
T Consensus 540 ~aF~rcvtL--------~Pd~~eaWnNls~ay------i~~~~k~ra~~~l~--EAlKcn~~~w~iWENymlvsvdvge~ 603 (777)
T KOG1128|consen 540 KAFHRCVTL--------EPDNAEAWNNLSTAY------IRLKKKKRAFRKLK--EALKCNYQHWQIWENYMLVSVDVGEF 603 (777)
T ss_pred HHHHHHhhc--------CCCchhhhhhhhHHH------HHHhhhHHHHHHHH--HHhhcCCCCCeeeechhhhhhhcccH
Confidence 999998875 566678899999998 77888889988888 66666656777777777777 88999
Q ss_pred HHHHHHHHHHHHHhh
Q 000589 1266 GNSGASANNSLNAAL 1280 (1403)
Q Consensus 1266 ~eA~~~~ekAL~~~~ 1280 (1403)
++|+..|.+.+....
T Consensus 604 eda~~A~~rll~~~~ 618 (777)
T KOG1128|consen 604 EDAIKAYHRLLDLRK 618 (777)
T ss_pred HHHHHHHHHHHHhhh
Confidence 999999999998443
No 139
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.19 E-value=0.00084 Score=81.53 Aligned_cols=246 Identities=15% Similarity=0.099 Sum_probs=163.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
+-++-+..|+..+-+..|.+|+....-..... ....++..+|..|...|+.+.|...+++|+...= ..-.+.+.
T Consensus 353 ~kRV~l~e~~~~~~i~tyteAv~~vdP~ka~G--s~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y----~~v~dLa~ 426 (835)
T KOG2047|consen 353 HKRVKLYEGNAAEQINTYTEAVKTVDPKKAVG--SPGTLWVEFAKLYENNGDLDDARVIFEKATKVPY----KTVEDLAE 426 (835)
T ss_pred HhhhhhhcCChHHHHHHHHHHHHccCcccCCC--ChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCc----cchHHHHH
Confidence 34566678889999999999987642211111 2345778899999999999999999999987621 11235678
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh----hcCCCCHHH------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSL----SSGPDHPDV------AATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~----~~g~d~p~~------a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.|.+-|.......+++.|++++++|...-.. .+...+|.. ..+|..++......|-++.....|.+.+++
T Consensus 427 vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidL 506 (835)
T KOG2047|consen 427 VWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDL 506 (835)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 8899999999999999999999999854221 122233332 345666777777888888888888888887
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH-HHHHHHHHHHHHHHhhcHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN-WMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~-~La~l~~r~~~~~~qg~~~e 1232 (1403)
. ..+..+..|.|..+....-|++|.+.|++.+.+|+ -|...+..+ .|..+.. .......+.
T Consensus 507 r--------iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk------~p~v~diW~tYLtkfi~----rygg~klEr 568 (835)
T KOG2047|consen 507 R--------IATPQIIINYAMFLEEHKYFEESFKAYERGISLFK------WPNVYDIWNTYLTKFIK----RYGGTKLER 568 (835)
T ss_pred h--------cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCC------CccHHHHHHHHHHHHHH----HhcCCCHHH
Confidence 6 34556677889999988899999999998888764 222222221 1121211 123344667
Q ss_pred HHHHHHHHHHHHHHhhChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1233 AFNAASTQKAIDILKAHPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1233 Ai~~l~~qkALei~~~~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
|..+++ +||+..+ |..+..++.+. .-|--..|+..|++|-.
T Consensus 569 aRdLFE--qaL~~Cp--p~~aKtiyLlYA~lEEe~GLar~amsiyerat~ 614 (835)
T KOG2047|consen 569 ARDLFE--QALDGCP--PEHAKTIYLLYAKLEEEHGLARHAMSIYERATS 614 (835)
T ss_pred HHHHHH--HHHhcCC--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 777777 7766433 44444433332 33555556666655443
No 140
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.19 E-value=0.00016 Score=86.04 Aligned_cols=132 Identities=20% Similarity=0.180 Sum_probs=108.6
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
....+.+..|..++..|++++|+..++..+.. .|+....+...+.++...|+..+|++.+++++.+
T Consensus 304 ~~~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l------ 369 (484)
T COG4783 304 GGLAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALAL------ 369 (484)
T ss_pred cchHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc------
Confidence 45567888899999999999999999985543 4666677778899999999999999999999976
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.|.......++|.+|...|++.+|+..++..+. +.+.....|..||.+|..+|+..+|...+.+.+
T Consensus 370 --~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 370 --DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred --CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 355566788999999999999999999988775 336667789999999999999888876655543
No 141
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=98.18 E-value=0.00074 Score=84.17 Aligned_cols=244 Identities=15% Similarity=0.141 Sum_probs=149.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-----CHHHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-----DMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-----~~~eAi~~~~kAL~i~er 1072 (1403)
...+-..|.+++..|++++|...|...+.. +|+....|..|..+..... +.+.-..+|.+....+.+
T Consensus 38 ~~~~E~rA~ll~kLg~~~eA~~~y~~Li~r--------NPdn~~Yy~~L~~~~g~~~~~~~~~~~~~~~~y~~l~~~yp~ 109 (517)
T PF12569_consen 38 LAVLEKRAELLLKLGRKEEAEKIYRELIDR--------NPDNYDYYRGLEEALGLQLQLSDEDVEKLLELYDELAEKYPR 109 (517)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHhhhcccccccHHHHHHHHHHHHHhCcc
Confidence 344556899999999999999999999887 4556666666666653322 345555555554332211
Q ss_pred h-------cCCCC-h----------------hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh--cC------CCC
Q 000589 1073 C-------LGLDH-P----------------DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS--SG------PDH 1120 (1403)
Q Consensus 1073 ~-------lg~d~-p----------------~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~--~g------~d~ 1120 (1403)
. +..-. . .+.....+|-.+|....+..-...++...+...... +. ...
T Consensus 110 s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~ 189 (517)
T PF12569_consen 110 SDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEP 189 (517)
T ss_pred ccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCC
Confidence 1 00000 0 001122333333332222222222222222211111 00 112
Q ss_pred H-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 P-DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1121 p-~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
| ...++++.||..|...|++++|+.++++|++.. |.....|...|.+|...|++.+|..+++.|-.+-
T Consensus 190 p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--------Pt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD--- 258 (517)
T PF12569_consen 190 PSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--------PTLVELYMTKARILKHAGDLKEAAEAMDEARELD--- 258 (517)
T ss_pred chHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--------CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC---
Confidence 3 346889999999999999999999999999853 6678899999999999999999999999987641
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh-C--h-----HHHHHHHHHH------HhCCh
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA-H--P-----DLIHAFQAVA------AAGGS 1265 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~-~--p-----~~~~a~~~La------~~G~~ 1265 (1403)
..-.-.-...+..+ ...|+.++|..... ++.. . | ++...++.+. ++|++
T Consensus 259 -----~~DRyiNsK~aKy~------LRa~~~e~A~~~~~------~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~ 321 (517)
T PF12569_consen 259 -----LADRYINSKCAKYL------LRAGRIEEAEKTAS------LFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDY 321 (517)
T ss_pred -----hhhHHHHHHHHHHH------HHCCCHHHHHHHHH------hhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhH
Confidence 11111222222232 67789999987664 3331 1 1 2223333332 78999
Q ss_pred HHHHHHHHHHHH
Q 000589 1266 GNSGASANNSLN 1277 (1403)
Q Consensus 1266 ~eA~~~~ekAL~ 1277 (1403)
..|+..|..+.+
T Consensus 322 ~~ALk~~~~v~k 333 (517)
T PF12569_consen 322 GLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHH
Confidence 999999999988
No 142
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=98.15 E-value=4.7e-05 Score=95.18 Aligned_cols=142 Identities=14% Similarity=0.085 Sum_probs=109.9
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH--------H
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGL---LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA--------G 1058 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~---~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~--------e 1058 (1403)
...+....|..++..|..++..++ +..|+.+|++|+++ +|+.+.++..|+.+|.....+. .
T Consensus 331 ~~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~ 402 (517)
T PRK10153 331 QGLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAA 402 (517)
T ss_pred ccCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHH
Confidence 445677789999999999887765 78999999999998 7888888888888876653332 2
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC
Q 000589 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG 1138 (1403)
Q Consensus 1059 Ai~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g 1138 (1403)
+....++++.+ ...+....+|.-+|..+...|++++|..++++|+.+. |. +.+|..+|.++...|
T Consensus 403 a~~~~~~a~al------~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--------ps-~~a~~~lG~~~~~~G 467 (517)
T PRK10153 403 LSTELDNIVAL------PELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--------MS-WLNYVLLGKVYELKG 467 (517)
T ss_pred HHHHHHHhhhc------ccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--------CC-HHHHHHHHHHHHHcC
Confidence 33333332222 1123334678888999999999999999999999862 43 578999999999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 000589 1139 KMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1139 ~~deAl~~lekAL~l~ 1154 (1403)
++++|++.|++|+++.
T Consensus 468 ~~~eA~~~~~~A~~L~ 483 (517)
T PRK10153 468 DNRLAADAYSTAFNLR 483 (517)
T ss_pred CHHHHHHHHHHHHhcC
Confidence 9999999999999875
No 143
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=98.11 E-value=0.00088 Score=81.37 Aligned_cols=232 Identities=10% Similarity=0.072 Sum_probs=139.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHH--HHHHHhcC-------------CHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYL--AMVLYHAG-------------DMAGAIM 1061 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~L--A~iy~~~G-------------~~~eAi~ 1061 (1403)
.+..+..+|..|+..|.++.|.+.|.+++...-.+ .+...+..+|... ..+...++ +++-...
T Consensus 247 ~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~tv--rDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a 324 (835)
T KOG2047|consen 247 LGFLWCSLADYYIRSGLFEKARDVYEEAIQTVMTV--RDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMA 324 (835)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhheeh--hhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHH
Confidence 46677889999999999999999999998763221 1111121222111 11111111 1122222
Q ss_pred HHHHHHHHHH----HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc
Q 000589 1062 QQHKELIINE----RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1062 ~~~kAL~i~e----r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~ 1137 (1403)
.++..+.... .++-..+|.....+.. .+-+..|+..+-+..|.+|+....-... +......+..+|..|...
T Consensus 325 ~~e~lm~rr~~~lNsVlLRQn~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~vdP~ka--~Gs~~~Lw~~faklYe~~ 400 (835)
T KOG2047|consen 325 RFESLMNRRPLLLNSVLLRQNPHNVEEWHK--RVKLYEGNAAEQINTYTEAVKTVDPKKA--VGSPGTLWVEFAKLYENN 400 (835)
T ss_pred HHHHHHhccchHHHHHHHhcCCccHHHHHh--hhhhhcCChHHHHHHHHHHHHccCcccC--CCChhhHHHHHHHHHHhc
Confidence 2333222110 0000112222333322 3334567888889999999875432211 223456788999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH----HHhCCCCHHHHHHHHH
Q 000589 1138 GKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV----KQLGEEDSRTKDSQNW 1213 (1403)
Q Consensus 1138 g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~----~~lg~~~~~t~~a~~~ 1213 (1403)
|+.+.|...|++|....-. .-.+.+.+|.+-|..-....+++.|+.+++.|...=. ..+...+|-....+..
T Consensus 401 ~~l~~aRvifeka~~V~y~----~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrS 476 (835)
T KOG2047|consen 401 GDLDDARVIFEKATKVPYK----TVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRS 476 (835)
T ss_pred CcHHHHHHHHHHhhcCCcc----chHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHh
Confidence 9999999999999875421 1245688899999999999999999999998875421 2233445555555555
Q ss_pred HHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1214 MKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1214 La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
|-.+.++.......|-++.....|.
T Consensus 477 lkiWs~y~DleEs~gtfestk~vYd 501 (835)
T KOG2047|consen 477 LKIWSMYADLEESLGTFESTKAVYD 501 (835)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHH
Confidence 5555555555566666666555555
No 144
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=98.09 E-value=7.3e-05 Score=75.06 Aligned_cols=102 Identities=23% Similarity=0.147 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+|++|.++-..|+.++|+.+|++++.. |...+....++..+|..|..+|++++|+..+++++.-+ ++.
T Consensus 2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~-----gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-----p~~ 71 (120)
T PF12688_consen 2 RALYELAWAHDSLGREEEAIPLYRRALAA-----GLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-----PDD 71 (120)
T ss_pred chHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CCc
Confidence 46789999999999999999999999885 55667778899999999999999999999999997642 222
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
+........++.++...|++++|+..+..++.
T Consensus 72 ~~~~~l~~f~Al~L~~~gr~~eAl~~~l~~la 103 (120)
T PF12688_consen 72 ELNAALRVFLALALYNLGRPKEALEWLLEALA 103 (120)
T ss_pred cccHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 23455667789999999999999999888774
No 145
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.07 E-value=3.7e-05 Score=89.73 Aligned_cols=138 Identities=17% Similarity=0.165 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD-------TAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~-------~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+.....-|..|++.|+|..|...|++|+.......+.+..+ ...++.|||.||..+++|.+|+.+..++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 44456678899999999999999999999987655544322 3467899999999999999999999999975
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLS-HQHEKK 1191 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eA-i~~lkk 1191 (1403)
.|....+++.-|.+|..+|+|+.|+..|++|+++. |....+...|..+.....++.+. .++|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46667889999999999999999999999999975 33334455555554444333322 344444
Q ss_pred HH
Q 000589 1192 TY 1193 (1403)
Q Consensus 1192 Al 1193 (1403)
++
T Consensus 352 mF 353 (397)
T KOG0543|consen 352 MF 353 (397)
T ss_pred Hh
Confidence 33
No 146
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.04 E-value=2.4e-05 Score=71.99 Aligned_cols=96 Identities=33% Similarity=0.470 Sum_probs=81.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
++..+|.++...|++++|+.++++++... |....++..+|.++...+++++|+.++++++.+. |
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 57889999999999999999999998863 3334678899999999999999999999998752 2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
....++..+|.++...|++++|..++.++++.
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 22367899999999999999999999988764
No 147
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.01 E-value=2.8e-05 Score=71.50 Aligned_cols=96 Identities=29% Similarity=0.417 Sum_probs=81.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.++.+|..+...|++++|+.++.+++... |....++..+|.++...+++++|+.++++++.+. +
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~--------~ 65 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD--------PDNADAYYNLAAAYYKLGKYEEALEDYEKALELD--------P 65 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC--------CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--------C
Confidence 46789999999999999999999998872 2233678899999999999999999999998863 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
....++..+|.++...|++++|..++.+++..
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 66 DNAKAYYNLGLAYYKLGKYEEALEAYEKALEL 97 (100)
T ss_pred cchhHHHHHHHHHHHHHhHHHHHHHHHHHHcc
Confidence 33367889999999999999999999998754
No 148
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.00 E-value=7.6e-05 Score=87.23 Aligned_cols=139 Identities=20% Similarity=0.195 Sum_probs=106.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCH-------HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHR-------EVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p-------~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
|...-+.|..|+..|+|..|...|.+|+..+....+.+.. ....++.|||.+|..+++|.+|+.++.++|.+
T Consensus 208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~- 286 (397)
T KOG0543|consen 208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLEL- 286 (397)
T ss_pred HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhc-
Confidence 4555667999999999999999999999987654433222 23468999999999999999999999999987
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHH-HHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTA-LRYLQE 1149 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deA-l~~lek 1149 (1403)
.+....+++.-|.+|..+|+|+.|+..|++|+.+. |..-.+...|..+.....++.+. .++|..
T Consensus 287 -------~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~--------P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 287 -------DPNNVKALYRRGQALLALGEYDLARDDFQKALKLE--------PSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred -------CCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC--------CCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46678899999999999999999999999999873 33344455565555444433332 444444
Q ss_pred HHH
Q 000589 1150 ALK 1152 (1403)
Q Consensus 1150 AL~ 1152 (1403)
.+.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 443
No 149
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=98.00 E-value=0.0001 Score=84.32 Aligned_cols=104 Identities=17% Similarity=0.139 Sum_probs=89.8
Q ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1041 NCCRYLAMVL-YHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1041 ~a~~~LA~iy-~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...+..|..+ +..|+|++|+..|++.+..+ ++++....+++.||.+|+..|++++|+.+|++++..+ ++
T Consensus 143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-----P~ 212 (263)
T PRK10803 143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-----PK 212 (263)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----CC
Confidence 3445555554 56799999999999999875 5556667899999999999999999999999999764 67
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
++....+++.+|.++..+|++++|+.+|+++++.+
T Consensus 213 s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 213 SPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 88899999999999999999999999999998865
No 150
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=97.99 E-value=0.00032 Score=83.51 Aligned_cols=162 Identities=15% Similarity=0.137 Sum_probs=129.0
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....|..+..++..|++++|+..+...+.. +|+........+.++...++..+|++.+++++...
T Consensus 306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--------~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~------- 370 (484)
T COG4783 306 LAAQYGRALQTYLAGQYDEALKLLQPLIAA--------QPDNPYYLELAGDILLEANKAKEAIERLKKALALD------- 370 (484)
T ss_pred hHHHHHHHHHHHHhcccchHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-------
Confidence 445677888889999999999999996554 56667778889999999999999999999999873
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|.......++|..|...|++.+|+.++.+.+. ..|+....|..||..|..+|+..+|...
T Consensus 371 -P~~~~l~~~~a~all~~g~~~eai~~L~~~~~--------~~p~dp~~w~~LAqay~~~g~~~~a~~A----------- 430 (484)
T COG4783 371 -PNSPLLQLNLAQALLKGGKPQEAIRILNRYLF--------NDPEDPNGWDLLAQAYAELGNRAEALLA----------- 430 (484)
T ss_pred -CCccHHHHHHHHHHHhcCChHHHHHHHHHHhh--------cCCCCchHHHHHHHHHHHhCchHHHHHH-----------
Confidence 55567788999999999999999999998874 3566777899999999999988776654
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQN 1212 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~ 1212 (1403)
.|..|...|+++.|+..+..+.+. .+.+.+....+-.
T Consensus 431 --------------~AE~~~~~G~~~~A~~~l~~A~~~----~~~~~~~~aR~da 467 (484)
T COG4783 431 --------------RAEGYALAGRLEQAIIFLMRASQQ----VKLGFPDWARADA 467 (484)
T ss_pred --------------HHHHHHhCCCHHHHHHHHHHHHHh----ccCCcHHHHHHHH
Confidence 344566789999999998887664 3344444444333
No 151
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.98 E-value=5.2e-05 Score=71.17 Aligned_cols=84 Identities=24% Similarity=0.249 Sum_probs=66.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA 1173 (1403)
.+|+|++|+.++++++..... .+ ....++.+|.+|...|+|++|+.++++ +... +....+.+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~~-----~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDPT-----NP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHCG-----TH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCCC-----Ch-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 368999999999999987522 23 455677899999999999999999998 4433 23456667789
Q ss_pred HHHHHcCCHHHHHHHHHHH
Q 000589 1174 IAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1174 ~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.++..+|++++|+.+++++
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 152
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.98 E-value=0.00013 Score=83.63 Aligned_cols=106 Identities=12% Similarity=0.074 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 997 EAKNLVEMGKVQ-LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 997 ~A~~l~~lG~~~-~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
.....|..+..+ +..|+|++|+..|+..+..+ |+++....+++.||.+|+..|++++|+.+|++++..+
T Consensus 141 ~e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y-----P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y----- 210 (263)
T PRK10803 141 DANTDYNAAIALVQDKSRQDDAIVAFQNFVKKY-----PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY----- 210 (263)
T ss_pred CHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-----cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-----
Confidence 456777777766 66799999999999999884 4566667899999999999999999999999999875
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
++++....++..+|.++..+|++++|..+|++++..+
T Consensus 211 P~s~~~~dAl~klg~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 211 PKSPKAADAMFKVGVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred CCCcchhHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 6788899999999999999999999999999998753
No 153
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.00066 Score=77.05 Aligned_cols=136 Identities=18% Similarity=0.111 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH----------
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII---------- 1069 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i---------- 1069 (1403)
.-..+|.+++..|+|++|+..|.-+.+. .+ --+....+||-+++.+|.|.+|.....+|-..
T Consensus 59 ~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~--~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhl 130 (557)
T KOG3785|consen 59 LQLWIAHCYFHLGDYEEALNVYTFLMNK------DD--APAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHL 130 (557)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHhcc------CC--CCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHH
Confidence 3445899999999999999988776542 11 12456778999999999999999887765221
Q ss_pred HHHhcCC---------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH
Q 000589 1070 NERCLGL---------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM 1140 (1403)
Q Consensus 1070 ~er~lg~---------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~ 1140 (1403)
..+ ++. .-.++..-...||.+++..-.|++|++.|.+++. ++|+....-.++|.||.++.-|
T Consensus 131 ahk-lndEk~~~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~--------dn~ey~alNVy~ALCyyKlDYy 201 (557)
T KOG3785|consen 131 AHK-LNDEKRILTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQ--------DNPEYIALNVYMALCYYKLDYY 201 (557)
T ss_pred HHH-hCcHHHHHHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHh--------cChhhhhhHHHHHHHHHhcchh
Confidence 111 111 0012223344567777777788888888888773 5788888888999999999999
Q ss_pred HHHHHHHHHHHH
Q 000589 1141 DTALRYLQEALK 1152 (1403)
Q Consensus 1141 deAl~~lekAL~ 1152 (1403)
+-+.+.+.--|+
T Consensus 202 dvsqevl~vYL~ 213 (557)
T KOG3785|consen 202 DVSQEVLKVYLR 213 (557)
T ss_pred hhHHHHHHHHHH
Confidence 988877665444
No 154
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.97 E-value=3.3e-05 Score=72.48 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=67.0
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMA 1089 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA 1089 (1403)
.+|+|+.|+.+++++++... ..+ ....+..+|.+|+.+|+|++|+.++++ +... +......+.+|
T Consensus 1 ~~~~y~~Ai~~~~k~~~~~~-----~~~-~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~--------~~~~~~~~l~a 65 (84)
T PF12895_consen 1 DQGNYENAIKYYEKLLELDP-----TNP-NSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD--------PSNPDIHYLLA 65 (84)
T ss_dssp HTT-HHHHHHHHHHHHHHHC-----GTH-HHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH--------HCHHHHHHHHH
T ss_pred CCccHHHHHHHHHHHHHHCC-----CCh-hHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC--------CCCHHHHHHHH
Confidence 36899999999999999842 123 455677799999999999999999998 4332 34466777889
Q ss_pred HHHHHCCCHHHHHHHHHHH
Q 000589 1090 LFYHGLNQTELALRHMSRA 1108 (1403)
Q Consensus 1090 ~~~~~~G~~~eAl~~l~rA 1108 (1403)
.+++.+|+|++|+.+|++|
T Consensus 66 ~~~~~l~~y~eAi~~l~~~ 84 (84)
T PF12895_consen 66 RCLLKLGKYEEAIKALEKA 84 (84)
T ss_dssp HHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHhcC
Confidence 9999999999999999875
No 155
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.97 E-value=0.0017 Score=76.77 Aligned_cols=225 Identities=16% Similarity=0.071 Sum_probs=162.6
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC--CHH----HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC--CCh
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPM--HRE----VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL--DHP 1079 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~--~p~----~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~--d~p 1079 (1403)
-+..|-|++|..+-.+++...++....+ .+- ....+-++..+-.-.|++.+|++-...+...+.+.-++ -..
T Consensus 285 sm~~gy~~~~~K~tDe~i~q~eklkq~d~~srilsm~km~~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~ 364 (629)
T KOG2300|consen 285 SMPAGYFKKAQKYTDEAIKQTEKLKQADLMSRILSMFKMILLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRA 364 (629)
T ss_pred hhhhHHHHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHH
Confidence 3456778888888888888766653222 111 12344566777788999999999999999998886542 223
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
..++..+.+|.+...-+.|+.|+..|..|..+.... ...+.+-.|+|.+|...++-+.-- ++++.. |
T Consensus 365 ~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~-----dl~a~~nlnlAi~YL~~~~~ed~y----~~ld~i----~ 431 (629)
T KOG2300|consen 365 HEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI-----DLQAFCNLNLAISYLRIGDAEDLY----KALDLI----G 431 (629)
T ss_pred hHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH-----HHHHHHHHhHHHHHHHhccHHHHH----HHHHhc----C
Confidence 456778889999999999999999999999876443 335667789999999988765433 344332 2
Q ss_pred CC-------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1160 EE-------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1160 ~~-------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
+. +...+.+++..|...+.++++.+|...+++.+++... .+....+...+..|+.+. ...|+..+
T Consensus 432 p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~Lkmana--ed~~rL~a~~LvLLs~v~------lslgn~~e 503 (629)
T KOG2300|consen 432 PLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRETLKMANA--EDLNRLTACSLVLLSHVF------LSLGNTVE 503 (629)
T ss_pred CCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhcch--hhHHHHHHHHHHHHHHHH------HHhcchHH
Confidence 22 1234667788888899999999999999999998632 123445566666677666 88899999
Q ss_pred HHHHHHHHHHHHHHhhChHHHHH
Q 000589 1233 AFNAASTQKAIDILKAHPDLIHA 1255 (1403)
Q Consensus 1233 Ai~~l~~qkALei~~~~p~~~~a 1255 (1403)
+.+..+ -+++..+.-||....
T Consensus 504 s~nmvr--pamqlAkKi~Di~vq 524 (629)
T KOG2300|consen 504 SRNMVR--PAMQLAKKIPDIPVQ 524 (629)
T ss_pred HHhccc--hHHHHHhcCCCchHH
Confidence 998888 777777765654433
No 156
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.97 E-value=3.3e-05 Score=69.33 Aligned_cols=64 Identities=30% Similarity=0.443 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN-QTELALRHMSRALLL 1111 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G-~~~eAl~~l~rAL~l 1111 (1403)
+..+..+|.+++..|++++|+.+|.+++.+ +|....++.++|.+|..+| ++.+|+.++++++.+
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 578999999999999999999999999998 4778889999999999999 799999999999976
No 157
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.96 E-value=0.0028 Score=69.94 Aligned_cols=162 Identities=15% Similarity=0.123 Sum_probs=124.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
....+.+..|+.+.|..++.+....+ |...+....-|+.+-..|++++|+++|...+. . +|...
T Consensus 57 qV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~-------d-dpt~~ 120 (289)
T KOG3060|consen 57 QVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLLEATGNYKEAIEYYESLLE-------D-DPTDT 120 (289)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHHHHhhchhhHHHHHHHHhc-------c-Ccchh
Confidence 34556677888999999888765542 33344556678888889999999999887664 2 35444
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCc
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~ 1162 (1403)
.++-.--.+...+|+.-+|++.+..-++.+ +....+|..|+.+|...|+|.+|.-+|++.+-+.
T Consensus 121 v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~-------- 184 (289)
T KOG3060|consen 121 VIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQ-------- 184 (289)
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcC--------
Confidence 555555556678899899999888877764 4456779999999999999999999999998754
Q ss_pred HHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHH
Q 000589 1163 IQTAVCYHALAIAFNCMG---AFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1163 ~~~a~~~~~LA~~y~~~G---d~~eAi~~lkkAl~i~ 1196 (1403)
|....++..||.+++-+| ++..|..||.+|+++.
T Consensus 185 P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~ 221 (289)
T KOG3060|consen 185 PFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN 221 (289)
T ss_pred CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence 555667778888888776 6778999999999874
No 158
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.94 E-value=3.4e-05 Score=69.26 Aligned_cols=65 Identities=23% Similarity=0.351 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELII 1069 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i 1069 (1403)
.|..++.+|..++..|++++|+.+|.+++.+ +|....++.++|.+|..+| ++++|+.++++|+.+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~--------~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIEL--------DPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH--------STTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--------CCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 3678999999999999999999999999998 6778889999999999999 799999999999986
No 159
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00023 Score=79.18 Aligned_cols=182 Identities=12% Similarity=0.010 Sum_probs=118.6
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000589 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM 1088 (1403)
Q Consensus 1009 ~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nL 1088 (1403)
+...+|.+|++++.--.+. .|.....+..||.||+...+|..|.++|.+...+ +|...+.....
T Consensus 21 I~d~ry~DaI~~l~s~~Er--------~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~ 84 (459)
T KOG4340|consen 21 IRDARYADAIQLLGSELER--------SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQ 84 (459)
T ss_pred HHHhhHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHH
Confidence 5667788888877654433 5656678899999999999999999999987665 68877777778
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH
Q 000589 1089 ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC 1168 (1403)
Q Consensus 1089 A~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~ 1168 (1403)
|..++..+.+..|+........ +......++..-+.+....+++..+..+.++. -| ...+..
T Consensus 85 AQSLY~A~i~ADALrV~~~~~D--------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---en~Ad~ 146 (459)
T KOG4340|consen 85 AQSLYKACIYADALRVAFLLLD--------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---ENEADG 146 (459)
T ss_pred HHHHHHhcccHHHHHHHHHhcC--------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---CCccch
Confidence 8889999999999877654331 11112233333344455555555555444321 11 134555
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..+.|.+.++.|+++.|++-|+.|++. +...|..+ ++++..+ ...+++..|+.+..
T Consensus 147 ~in~gCllykegqyEaAvqkFqaAlqv-----sGyqpllA---YniALaH------y~~~qyasALk~iS 202 (459)
T KOG4340|consen 147 QINLGCLLYKEGQYEAAVQKFQAALQV-----SGYQPLLA---YNLALAH------YSSRQYASALKHIS 202 (459)
T ss_pred hccchheeeccccHHHHHHHHHHHHhh-----cCCCchhH---HHHHHHH------HhhhhHHHHHHHHH
Confidence 667777777777777777777777663 22333322 4455555 56677777776666
No 160
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.90 E-value=0.00075 Score=76.63 Aligned_cols=86 Identities=21% Similarity=0.104 Sum_probs=64.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGN 1087 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~n 1087 (1403)
++...+|..|+.+++-.+.+- ..+....-..+|.+|+++|+|++|+..|.-+..- .+.+ +....+
T Consensus 32 fls~rDytGAislLefk~~~~-------~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~------~~~~--~el~vn 96 (557)
T KOG3785|consen 32 FLSNRDYTGAISLLEFKLNLD-------REEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK------DDAP--AELGVN 96 (557)
T ss_pred HHhcccchhHHHHHHHhhccc-------hhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc------CCCC--cccchh
Confidence 345668999999888776542 2233456678999999999999999999876542 2222 456779
Q ss_pred HHHHHHHCCCHHHHHHHHHHH
Q 000589 1088 MALFYHGLNQTELALRHMSRA 1108 (1403)
Q Consensus 1088 LA~~~~~~G~~~eAl~~l~rA 1108 (1403)
||.+++.+|.|.+|.....+|
T Consensus 97 LAcc~FyLg~Y~eA~~~~~ka 117 (557)
T KOG3785|consen 97 LACCKFYLGQYIEAKSIAEKA 117 (557)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999998877665
No 161
>PRK11906 transcriptional regulator; Provisional
Probab=97.89 E-value=0.0002 Score=85.68 Aligned_cols=167 Identities=14% Similarity=0.073 Sum_probs=125.9
Q ss_pred HHH--HHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---------CCHHHHHHH
Q 000589 997 EAK--NLVEMGKVQLAEGL---LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---------GDMAGAIMQ 1062 (1403)
Q Consensus 997 ~A~--~l~~lG~~~~~~G~---~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---------G~~~eAi~~ 1062 (1403)
++. .++..|...+.++. .+.|+.+|.+|+... +.+|+.+.+|..+|.+++.. .+..+|.++
T Consensus 252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~ 326 (458)
T PRK11906 252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALEL 326 (458)
T ss_pred cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHH
Confidence 555 66778887776664 567888888888431 33789999999999998765 234566677
Q ss_pred HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1063 QHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDT 1142 (1403)
Q Consensus 1063 ~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~de 1142 (1403)
.++|+++ .+..+.++..+|.++...++++.|+..|++|+.+ .|+.+.+++..|.++...|+.++
T Consensus 327 A~rAvel--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--------~Pn~A~~~~~~~~~~~~~G~~~~ 390 (458)
T PRK11906 327 LDYVSDI--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIH--------STDIASLYYYRALVHFHNEKIEE 390 (458)
T ss_pred HHHHHhc--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--------CCccHHHHHHHHHHHHHcCCHHH
Confidence 7777665 3566788999999999999999999999999976 58889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1143 ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1143 Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
|++.+++|+++... ..+.....+..-.+.....+.|+.+|-+
T Consensus 391 a~~~i~~alrLsP~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 432 (458)
T PRK11906 391 ARICIDKSLQLEPR-------RRKAVVIKECVDMYVPNPLKNNIKLYYK 432 (458)
T ss_pred HHHHHHHHhccCch-------hhHHHHHHHHHHHHcCCchhhhHHHHhh
Confidence 99999999997521 2222333444423345567777776643
No 162
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.89 E-value=0.0036 Score=69.04 Aligned_cols=196 Identities=14% Similarity=0.039 Sum_probs=134.0
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 000589 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFY 1092 (1403)
Q Consensus 1013 ~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~ 1092 (1403)
+.++-+++..+.+.....- ...++....|-.+..+....|+.+-|..++.+....+ |........-|..+
T Consensus 27 nseevv~l~~~~~~~~k~~--~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--------p~S~RV~~lkam~l 96 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSG--ALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--------PGSKRVGKLKAMLL 96 (289)
T ss_pred CHHHHHHHHHHHHHHhhhc--ccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--------CCChhHHHHHHHHH
Confidence 4555666666655554332 2234556667777778888899999988887755442 33344556678899
Q ss_pred HHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1093 HGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1093 ~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
...|+|++|+++|...++ ++|....++-.--.+...+|+.-+|++-+.+-++.+ +....+|+.|
T Consensus 97 Ea~~~~~~A~e~y~~lL~--------ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F--------~~D~EAW~eL 160 (289)
T KOG3060|consen 97 EATGNYKEAIEYYESLLE--------DDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKF--------MNDQEAWHEL 160 (289)
T ss_pred HHhhchhhHHHHHHHHhc--------cCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHh--------cCcHHHHHHH
Confidence 999999999999999874 445555555555556778898889999998888876 4567889999
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK 1247 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~ 1247 (1403)
+.+|...|+|++|.-++++.+-+ .|..+ .....++.++.. .....++.-|..+|. +++++-.
T Consensus 161 aeiY~~~~~f~kA~fClEE~ll~-----~P~n~---l~f~rlae~~Yt---~gg~eN~~~arkyy~--~alkl~~ 222 (289)
T KOG3060|consen 161 AEIYLSEGDFEKAAFCLEELLLI-----QPFNP---LYFQRLAEVLYT---QGGAENLELARKYYE--RALKLNP 222 (289)
T ss_pred HHHHHhHhHHHHHHHHHHHHHHc-----CCCcH---HHHHHHHHHHHH---HhhHHHHHHHHHHHH--HHHHhCh
Confidence 99999999999999999998764 23333 233344443310 011334556777777 5555543
No 163
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.87 E-value=0.0077 Score=76.57 Aligned_cols=261 Identities=13% Similarity=0.018 Sum_probs=165.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT-GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~-g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
....++....+.++.+|..++.++........ +......+......|.+....|++++|+++.+.++...-. ....
T Consensus 418 vll~aW~~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~ 494 (894)
T COG2909 418 VLLQAWLLASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYR 494 (894)
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccch
Confidence 34457777888999999999999877654310 1122334566667788899999999999999999886421 1223
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
..+.++..+|.+..-.|++++|+.+..++.++.+.. ........+.+..+.++..+|+ -+..-..++.........
T Consensus 495 ~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~--~~~~l~~~~~~~~s~il~~qGq--~~~a~~~~~~~~~~~q~l 570 (894)
T COG2909 495 SRIVALSVLGEAAHIRGELTQALALMQQAEQMARQH--DVYHLALWSLLQQSEILEAQGQ--VARAEQEKAFNLIREQHL 570 (894)
T ss_pred hhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHHHHHhhH--HHHHHHHHHHHHHHHHHh
Confidence 456788899999999999999999999999987764 2224455667778999999993 333333333333333222
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAST 1239 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~ 1239 (1403)
...+.........+.++...-+++.+..-....+.+..... +......-++..|+.++ ..+|++++|...+.
T Consensus 571 ~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~-~~~~~~~~~~~~LA~l~------~~~Gdl~~A~~~l~- 642 (894)
T COG2909 571 EQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYT-PQPLLSRLALSMLAELE------FLRGDLDKALAQLD- 642 (894)
T ss_pred hhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcc-cchhHHHHHHHHHHHHH------HhcCCHHHHHHHHH-
Confidence 23233222222333333333337777777777776543321 22222222334666666 89999999998887
Q ss_pred HHHHHHHhh---ChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1240 QKAIDILKA---HPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1240 qkALei~~~---~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
+....+.. |++...+..... .+|++.+|.....+...
T Consensus 643 -~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~s~~ 687 (894)
T COG2909 643 -ELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLKSGD 687 (894)
T ss_pred -HHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHhccC
Confidence 44444432 333222222111 78999999988888555
No 164
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.85 E-value=0.00085 Score=74.74 Aligned_cols=170 Identities=16% Similarity=0.118 Sum_probs=124.1
Q ss_pred hcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 990 HSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 990 ~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
...|++.-+ +..+|.+|+...+|..|.++|.+.-.+ +|........-|+.+++.+.+..|+........
T Consensus 38 Er~p~~rAg--LSlLgyCYY~~Q~f~~AA~CYeQL~ql--------~P~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D- 106 (459)
T KOG4340|consen 38 ERSPRSRAG--LSLLGYCYYRLQEFALAAECYEQLGQL--------HPELEQYRLYQAQSLYKACIYADALRVAFLLLD- 106 (459)
T ss_pred hcCccchHH--HHHHHHHHHHHHHHHHHHHHHHHHHhh--------ChHHHHHHHHHHHHHHHhcccHHHHHHHHHhcC-
Confidence 334444333 455899999999999999999987665 788888888899999999999999876654322
Q ss_pred HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1070 NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1070 ~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.....-.++-.-+.+.+..+++..+..+.++. .| ...+...++.|.++.+.|+|++|++-|+.
T Consensus 107 -------~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQl-------p~---en~Ad~~in~gCllykegqyEaAvqkFqa 169 (459)
T KOG4340|consen 107 -------NPALHSRVLQLQAAIKYSEGDLPGSRSLVEQL-------PS---ENEADGQINLGCLLYKEGQYEAAVQKFQA 169 (459)
T ss_pred -------CHHHHHHHHHHHHHHhcccccCcchHHHHHhc-------cC---CCccchhccchheeeccccHHHHHHHHHH
Confidence 11222344444566667777777766655442 12 23566788999999999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
|++.. |-+ ...-+++|.+.+..|+++.|+.+..+.++-
T Consensus 170 Alqvs----Gyq----pllAYniALaHy~~~qyasALk~iSEIieR 207 (459)
T KOG4340|consen 170 ALQVS----GYQ----PLLAYNLALAHYSSRQYASALKHISEIIER 207 (459)
T ss_pred HHhhc----CCC----chhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 98754 222 234578899999999999999998887764
No 165
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=97.79 E-value=0.0024 Score=74.54 Aligned_cols=264 Identities=15% Similarity=0.103 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+....+-|..-+..|+|.+|+....++-+. ++.-..+|..-+..-..+|+++.|=.|+.++-+.. .
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~--------~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~------~ 149 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEH--------GEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELA------G 149 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhc--------CcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccC------C
Confidence 344455566667789999999999886554 33445567777888899999999999999988642 1
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
+ .....+...+.++...|+++.|..-..++++.. +. ....+.....+|...|++.+...+..+.-+- ..
T Consensus 150 ~-~~l~v~ltrarlll~~~d~~aA~~~v~~ll~~~-----pr---~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka--~~ 218 (400)
T COG3071 150 D-DTLAVELTRARLLLNRRDYPAARENVDQLLEMT-----PR---HPEVLRLALRAYIRLGAWQALLAILPKLRKA--GL 218 (400)
T ss_pred C-chHHHHHHHHHHHHhCCCchhHHHHHHHHHHhC-----cC---ChHHHHHHHHHHHHhccHHHHHHHHHHHHHc--cC
Confidence 2 234457778999999999999999999988854 33 3455667788999999999988887765331 12
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS-TQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~-~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
+++......+-..+.+.+. ..++-..+..... .++--+..+.+|....++..-. ..|++++|.+..+++++
T Consensus 219 l~~~e~~~le~~a~~glL~-------q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk 291 (400)
T COG3071 219 LSDEEAARLEQQAWEGLLQ-------QARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALK 291 (400)
T ss_pred CChHHHHHHHHHHHHHHHH-------HHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 2222222222223333222 2222222222111 1122233446677666555544 89999999999999998
Q ss_pred -------HhhcCCCCccccchH-HHHHHHHH---HHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1278 -------AALLGETLPRGRGFD-ERAARAAA---EVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1278 -------~~~~G~~~p~~~~~~-era~~a~~---e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
....+.-.|.-.... ..++.... +...+....|.++...+.+.+|...|+.++..-.+
T Consensus 292 ~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s 360 (400)
T COG3071 292 RQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKLWGKASEALEAALKLRPS 360 (400)
T ss_pred hccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC
Confidence 111121111111111 11222111 22456677799999999999999999988877554
No 166
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.78 E-value=0.00096 Score=66.17 Aligned_cols=101 Identities=26% Similarity=0.355 Sum_probs=88.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
.+-.-|......|+.+.|++.|.+++.+. |..+.+|+|.+..+.-+|+.++|+.-+.+|+++. |+...
T Consensus 45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~--------P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~tr 112 (175)
T KOG4555|consen 45 ELELKAIALAEAGDLDGALELFGQALCLA--------PERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQTR 112 (175)
T ss_pred HHHHHHHHHHhccchHHHHHHHHHHHHhc--------ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Cccch
Confidence 34455677788999999999999999985 7788999999999999999999999999999884 55556
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
....++..-|.+|..+|+-+.|..-|+.|-++-
T Consensus 113 tacqa~vQRg~lyRl~g~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 113 TACQAFVQRGLLYRLLGNDDAARADFEAAAQLG 145 (175)
T ss_pred HHHHHHHHHHHHHHHhCchHHHHHhHHHHHHhC
Confidence 677889999999999999999999999998763
No 167
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.78 E-value=0.00033 Score=87.70 Aligned_cols=124 Identities=15% Similarity=0.157 Sum_probs=93.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH--------HHHHHHHHHHHHHHHhhcCCCCHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT--------ELALRHMSRALLLLSLSSGPDHPDVAAT 1126 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~--------~eAl~~l~rAL~l~~~~~g~d~p~~a~~ 1126 (1403)
++..|+.+|++|+++ +|+.+.+|..++.+|.....+ ..+.....+++.+ +..+....+
T Consensus 357 ~~~~A~~lle~Ai~l--------dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al------~~~~~~~~~ 422 (517)
T PRK10153 357 SLNKASDLLEEILKS--------EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVAL------PELNVLPRI 422 (517)
T ss_pred HHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhc------ccCcCChHH
Confidence 467999999999998 588888888888877554322 2333333333322 112333467
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSR 1206 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~ 1206 (1403)
+.-+|.++...|++++|...|++|+++. + .+.+|..+|.+|...|++++|+++|++|+.+ .+.+|.
T Consensus 423 ~~ala~~~~~~g~~~~A~~~l~rAl~L~--------p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L-----~P~~pt 488 (517)
T PRK10153 423 YEILAVQALVKGKTDEAYQAINKAIDLE--------M-SWLNYVLLGKVYELKGDNRLAADAYSTAFNL-----RPGENT 488 (517)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcC--------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCCCch
Confidence 8888999999999999999999999975 3 3578999999999999999999999999875 455553
No 168
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.75 E-value=0.053 Score=70.08 Aligned_cols=335 Identities=16% Similarity=0.077 Sum_probs=202.6
Q ss_pred cHHHHHhhhhhhhhcC-CchhHHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC
Q 000589 977 ETSDILNLQPVVKHSV-PICSEAKNLVEMGKVQL-AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG 1054 (1403)
Q Consensus 977 ~~~dI~~l~pvvK~~~-~~~~~A~~l~~lG~~~~-~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G 1054 (1403)
....|.++..+.+... +...++...+.+|.+++ ...++++|+.++.+++.+.++ .........+...++.+|.+.+
T Consensus 37 I~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~--~~~~d~k~~~~~ll~~i~~~~~ 114 (608)
T PF10345_consen 37 IATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER--HRLTDLKFRCQFLLARIYFKTN 114 (608)
T ss_pred HHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc--cchHHHHHHHHHHHHHHHHhcC
Confidence 3444556666664333 34456999999999998 678899999999999999866 2223334667778899999998
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM-ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMM 1133 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nL-A~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~i 1133 (1403)
... |..++++++..++.. .+.....++..+ ..++...+++..|+..++....+.... .+......+....+.+
T Consensus 115 ~~~-a~~~l~~~I~~~~~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~--~d~~~~v~~~l~~~~l 188 (608)
T PF10345_consen 115 PKA-ALKNLDKAIEDSETY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR--GDPAVFVLASLSEALL 188 (608)
T ss_pred HHH-HHHHHHHHHHHHhcc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc--CCHHHHHHHHHHHHHH
Confidence 888 999999999988652 222333333333 333334489999999999999877543 2233344455556777
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHH--HHHHcCCHHHHHHHHHHHHHHHHHHhCCC-----C
Q 000589 1134 YQDIGKMDTALRYLQEALKKNERL--LGEEHIQTAVCYHALAI--AFNCMGAFKLSHQHEKKTYDILVKQLGEE-----D 1204 (1403)
Q Consensus 1134 y~~~g~~deAl~~lekAL~l~~~~--~G~~~~~~a~~~~~LA~--~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~-----~ 1204 (1403)
....+..+++++.++++....... .+..++....++..+-. ++...|+++.+...+++.-+.+...-... +
T Consensus 189 ~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~ 268 (608)
T PF10345_consen 189 HLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWD 268 (608)
T ss_pred HhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcC
Confidence 788888999999999998776654 22223344444444443 45567888788877776655544432110 0
Q ss_pred HH--H--------------HHHHHH------HHHHHHH-HHHHHHhhcHHHHHHHHHHHHHHHHHhhCh-----------
Q 000589 1205 SR--T--------------KDSQNW------MKTFKMR-ELQMNVQKQKGQAFNAASTQKAIDILKAHP----------- 1250 (1403)
Q Consensus 1205 ~~--t--------------~~a~~~------La~l~~r-~~~~~~qg~~~eAi~~l~~qkALei~~~~p----------- 1250 (1403)
.+ . .....| ...+|.. +......+..++|..++. ++++.....-
T Consensus 269 ~d~~i~l~~~~~~~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~--k~l~~i~~~~~~~~~~~~~sl 346 (608)
T PF10345_consen 269 EDGSIPLNIGEGSSNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLE--KALKQIEKLKIKSPSAPSESL 346 (608)
T ss_pred CCeeEEeecccccccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHH--HHHHHHHHhhccCCCCCCcCH
Confidence 00 0 001111 1111111 223344555557777776 6666554211
Q ss_pred --------H--HHH--HHHHHH----HhCChHHHHHHHHHHHHH-hhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHH
Q 000589 1251 --------D--LIH--AFQAVA----AAGGSGNSGASANNSLNA-ALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLI 1313 (1403)
Q Consensus 1251 --------~--~~~--a~~~La----~~G~~~eA~~~~ekAL~~-~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~ 1313 (1403)
. ... .+..++ ..+++..|....+.+... ...+..-..... ..+....|..+
T Consensus 347 ~~~~~~~~~~~~l~~~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~------------~~~~yL~gl~~ 414 (608)
T PF10345_consen 347 SEASERIQWLRYLQCYLLFYQIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLY------------PLLHYLLGLYY 414 (608)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhh------------HHHHHHHHHHH
Confidence 0 000 011111 568888888888877762 222221111111 23455557888
Q ss_pred hhCCCchhhhHHHHHHHHHH
Q 000589 1314 RPHGLPAQALPPLTQLLNII 1333 (1403)
Q Consensus 1314 ~~~g~~~eA~~~l~qaL~i~ 1333 (1403)
+..|+.+.|+..|.+.+..+
T Consensus 415 q~~g~l~~A~~~y~~~~~~~ 434 (608)
T PF10345_consen 415 QSTGDLEAALYQYQKPRFLL 434 (608)
T ss_pred HHcCCHHHHHHHHhhhHHhh
Confidence 88899999999998655444
No 169
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=97.74 E-value=0.00093 Score=66.26 Aligned_cols=102 Identities=23% Similarity=0.245 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+-..|..+...|+++.|++.|.+++.+ -|..+.+|++.|+.|..+|+.++|++-+.+|+++. |..
T Consensus 43 S~~LEl~~valaE~g~Ld~AlE~F~qal~l--------~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLa----g~~ 110 (175)
T KOG4555|consen 43 SRELELKAIALAEAGDLDGALELFGQALCL--------APERASAYNNRAQALRLQGDDEEALDDLNKALELA----GDQ 110 (175)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHh--------cccchHhhccHHHHHHHcCChHHHHHHHHHHHHhc----Ccc
Confidence 344555678888999999999999999998 46788999999999999999999999999999985 455
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.....++|...|.+|..+|+-+.|..-|+.|-++
T Consensus 111 trtacqa~vQRg~lyRl~g~dd~AR~DFe~AA~L 144 (175)
T KOG4555|consen 111 TRTACQAFVQRGLLYRLLGNDDAARADFEAAAQL 144 (175)
T ss_pred chHHHHHHHHHHHHHHHhCchHHHHHhHHHHHHh
Confidence 5566789999999999999999999999999875
No 170
>KOG2300 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.72 E-value=0.0048 Score=73.10 Aligned_cols=202 Identities=17% Similarity=0.124 Sum_probs=151.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP--MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~--~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
.+-.+..+-.-.|++.+|++-...+.+.+.+..++ .....+.....+|.....-+.|+.|...|..|.+..+..
T Consensus 325 ~LE~iv~c~lv~~~~~~al~~i~dm~~w~~r~p~~~Llr~~~~~ih~LlGlys~sv~~~enAe~hf~~a~k~t~~~---- 400 (629)
T KOG2300|consen 325 LLEHIVMCRLVRGDYVEALEEIVDMKNWCTRFPTPLLLRAHEAQIHMLLGLYSHSVNCYENAEFHFIEATKLTESI---- 400 (629)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhCCchHHHHHhHHHHHHHHhhHhhhcchHHHHHHHHHHHHHhhhHH----
Confidence 44456677778999999999999999998876442 122346677888888888999999999999999886442
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC-------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD-------HPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d-------~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.-.+.+-.|+|..|.+.++-+.- .++++.. ++. +...+.+++--|...+.++++.||..++.+.
T Consensus 401 -dl~a~~nlnlAi~YL~~~~~ed~----y~~ld~i----~p~nt~s~ssq~l~a~~~~v~glfaf~qn~lnEaK~~l~e~ 471 (629)
T KOG2300|consen 401 -DLQAFCNLNLAISYLRIGDAEDL----YKALDLI----GPLNTNSLSSQRLEASILYVYGLFAFKQNDLNEAKRFLRET 471 (629)
T ss_pred -HHHHHHHHhHHHHHHHhccHHHH----HHHHHhc----CCCCCCcchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 23455667899999998775433 3344332 332 2235667788888899999999999999999
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
|++... ......++..+..|+.+....|+..++.+..+-++++.++. ++++-...+...+..++
T Consensus 472 Lkmana--ed~~rL~a~~LvLLs~v~lslgn~~es~nmvrpamqlAkKi--~Di~vqLws~si~~~L~ 535 (629)
T KOG2300|consen 472 LKMANA--EDLNRLTACSLVLLSHVFLSLGNTVESRNMVRPAMQLAKKI--PDIPVQLWSSSILTDLY 535 (629)
T ss_pred Hhhcch--hhHHHHHHHHHHHHHHHHHHhcchHHHHhccchHHHHHhcC--CCchHHHHHHHHHHHHH
Confidence 998732 11234567778899999999999999999999999998876 45666665555555555
No 171
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=97.72 E-value=0.03 Score=66.37 Aligned_cols=300 Identities=12% Similarity=0.036 Sum_probs=192.4
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
+......++....+..-++.-...|+..-|...|.+|++.+.. .......+...|..-..+..++.|...|+-||
T Consensus 197 YerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~-----d~~~e~lfvaFA~fEe~qkE~ERar~iykyAl 271 (677)
T KOG1915|consen 197 YERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD-----DEEAEILFVAFAEFEERQKEYERARFIYKYAL 271 (677)
T ss_pred HHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333334455667777777777888888888888888877532 23334444555555555666666666666555
Q ss_pred HH---------------HHHhcCC---------------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1068 II---------------NERCLGL---------------------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1068 ~i---------------~er~lg~---------------------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.. +++.+|. ++|..-.++...-.+....|+.+.-.+.|++|+.-
T Consensus 272 d~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan 351 (677)
T KOG1915|consen 272 DHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN 351 (677)
T ss_pred HhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Confidence 43 2222332 22333345556666667789999999999999863
Q ss_pred HHhhcCC-CCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHH
Q 000589 1112 LSLSSGP-DHPDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHE 1189 (1403)
Q Consensus 1112 ~~~~~g~-d~p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~l 1189 (1403)
....... .-...+..+.|.+. .-....+.+.+.+.|+.+|++. ...+...+.++...|.....+.+...|.+.+
T Consensus 352 vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI----PHkkFtFaKiWlmyA~feIRq~~l~~ARkiL 427 (677)
T KOG1915|consen 352 VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI----PHKKFTFAKIWLMYAQFEIRQLNLTGARKIL 427 (677)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc----CcccchHHHHHHHHHHHHHHHcccHHHHHHH
Confidence 2110000 00112334444443 2346789999999999999975 2345667888889999999999999999988
Q ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCCh
Q 000589 1190 KKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGS 1265 (1403)
Q Consensus 1190 kkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~ 1265 (1403)
-.|+-.+.+ ..+...|.-|. .+.++++....+|+ ..+.-.|....++...| ..|+.
T Consensus 428 G~AIG~cPK------~KlFk~YIelE---------lqL~efDRcRkLYE-----kfle~~Pe~c~~W~kyaElE~~Lgdt 487 (677)
T KOG1915|consen 428 GNAIGKCPK------DKLFKGYIELE---------LQLREFDRCRKLYE-----KFLEFSPENCYAWSKYAELETSLGDT 487 (677)
T ss_pred HHHhccCCc------hhHHHHHHHHH---------HHHhhHHHHHHHHH-----HHHhcChHhhHHHHHHHHHHHHhhhH
Confidence 888764321 12233333332 66788888888888 66666788777777777 78999
Q ss_pred HHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHHHhhCCCchhhhHHHHHHHHHHh
Q 000589 1266 GNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLLIRPHGLPAQALPPLTQLLNIIN 1334 (1403)
Q Consensus 1266 ~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~ 1334 (1403)
+.|...|+-|+.... .+-|. . +..++-.-....|.++.|..+|++.|+.-.
T Consensus 488 dRaRaifelAi~qp~--ldmpe------l----------lwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 488 DRARAIFELAISQPA--LDMPE------L----------LWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHHHHHHHHHhcCcc--cccHH------H----------HHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 999999999987211 01111 1 222332234456888999999999988754
No 172
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.67 E-value=0.0061 Score=68.08 Aligned_cols=172 Identities=19% Similarity=0.210 Sum_probs=131.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
-+..|++.|...++.|+|++|...|+..... .+..|..-.+...++.++++.+++++|+.+..+-+.++ +
T Consensus 33 p~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~-----~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P 102 (254)
T COG4105 33 PASELYNEGLTELQKGNYEEAIKYFEALDSR-----HPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----P 102 (254)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----C
Confidence 4788999999999999999999999887654 24456667889999999999999999999999998875 6
Q ss_pred CChhHHHHHHHHHHHHHHC-----CCHH---HHHHHHHHHHHHHHhhcCCCCHH--------------HHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGL-----NQTE---LALRHMSRALLLLSLSSGPDHPD--------------VAATFINVAMMY 1134 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~-----G~~~---eAl~~l~rAL~l~~~~~g~d~p~--------------~a~~~~nLA~iy 1134 (1403)
.||+...+++..|..++.. .|.. +|..-|+..+.-+ ++.+. .+.--..+|..|
T Consensus 103 ~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY 177 (254)
T COG4105 103 THPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYY 177 (254)
T ss_pred CCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 7888888888888887642 2333 3444444444322 22221 122234678899
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
.+.|.+-.|+..+++.++-. ++....-.++..|..+|..+|-.++|...
T Consensus 178 ~kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY~~lgl~~~a~~~ 226 (254)
T COG4105 178 LKRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAYYALGLTDEAKKT 226 (254)
T ss_pred HHhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHHHHhCChHHHHHH
Confidence 99999999999999998865 33456677888999999999999988764
No 173
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=97.66 E-value=0.068 Score=66.83 Aligned_cols=194 Identities=15% Similarity=0.145 Sum_probs=115.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc-----CCCCH--------HHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT-----GPMHR--------EVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~-----g~~~p--------~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
-..|..-|.++-..|+.+.|+.+|..|-..+-.+. |.... ....+.+.||..|-..|++.+|+.+|.
T Consensus 912 ~~L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfT 991 (1416)
T KOG3617|consen 912 ESLYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFT 991 (1416)
T ss_pred hHHHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 34556678888899999999999998877654431 21111 112456789999999999999999998
Q ss_pred HHHHHHHHh--cCCCC-hhHHHH---------HHHHHHHHHHCC-CHHHHHHHHHH------------------HHHHHH
Q 000589 1065 KELIINERC--LGLDH-PDTAHS---------YGNMALFYHGLN-QTELALRHMSR------------------ALLLLS 1113 (1403)
Q Consensus 1065 kAL~i~er~--lg~d~-p~~~~a---------~~nLA~~~~~~G-~~~eAl~~l~r------------------AL~l~~ 1113 (1403)
+|-.....+ ...+. .+.... +..-|.+|...| ....|..+|.+ |+++..
T Consensus 992 rAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa 1071 (1416)
T KOG3617|consen 992 RAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIA 1071 (1416)
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHH
Confidence 875443211 11110 010000 111233333343 44444444433 233332
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHH-----------hC------CCcHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE------ALKKNERL-----------LG------EEHIQTAVCYH 1170 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek------AL~l~~~~-----------~G------~~~~~~a~~~~ 1170 (1403)
+-+.++ .....+..-+..+....+|++|..++-. |+.++... .. ++......++.
T Consensus 1072 ~DLd~~--sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLe 1149 (1416)
T KOG3617|consen 1072 KDLDAG--SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLE 1149 (1416)
T ss_pred HhcCCC--CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHH
Confidence 222221 1234466778888899999999877654 44444321 00 01123456788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1171 ALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1171 ~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.+|.++.++|.|..|-+-|.+|=
T Consensus 1150 qvae~c~qQG~Yh~AtKKfTQAG 1172 (1416)
T KOG3617|consen 1150 QVAELCLQQGAYHAATKKFTQAG 1172 (1416)
T ss_pred HHHHHHHhccchHHHHHHHhhhh
Confidence 99999999999999998888764
No 174
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.63 E-value=0.024 Score=69.56 Aligned_cols=202 Identities=17% Similarity=0.200 Sum_probs=116.6
Q ss_pred hhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHH
Q 000589 986 PVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSE------AFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGA 1059 (1403)
Q Consensus 986 pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~e------AL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eA 1059 (1403)
.+++++...-.....|-..|.+|-...++++|+++|.+ |+++.+-.+ ...+...--.-|.-+.+.|+++.|
T Consensus 649 ~il~~ia~alik~elydkagdlfeki~d~dkale~fkkgdaf~kaielarfaf---p~evv~lee~wg~hl~~~~q~daa 725 (1636)
T KOG3616|consen 649 EILEHIAAALIKGELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAF---PEEVVKLEEAWGDHLEQIGQLDAA 725 (1636)
T ss_pred HHHHHHHHHHHhhHHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhC---cHHHhhHHHHHhHHHHHHHhHHHH
Confidence 34444444444456666678888888899999998875 444433222 223444444556677788888888
Q ss_pred HHHHHHHHHHHH---HhcCC--------------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH------H-------
Q 000589 1060 IMQQHKELIINE---RCLGL--------------DHPDTAHSYGNMALFYHGLNQTELALRHMSRA------L------- 1109 (1403)
Q Consensus 1060 i~~~~kAL~i~e---r~lg~--------------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rA------L------- 1109 (1403)
+.+|-+|-.+.. ..+|. |.......|..+|.-|...|+|+.|.++|.++ +
T Consensus 726 inhfiea~~~~kaieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~~~~dai~my~k~~ 805 (1636)
T KOG3616|consen 726 INHFIEANCLIKAIEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEADLFKDAIDMYGKAG 805 (1636)
T ss_pred HHHHHHhhhHHHHHHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcchhHHHHHHHhccc
Confidence 887765433221 11111 11111234556777788888888888776443 2
Q ss_pred ------HHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHH------HHHHHHHHHH---------hCCCcH-HHHH
Q 000589 1110 ------LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYL------QEALKKNERL---------LGEEHI-QTAV 1167 (1403)
Q Consensus 1110 ------~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~l------ekAL~l~~~~---------~G~~~~-~~a~ 1167 (1403)
.+.....|+ ..+...|..-|.-+-..|+|.+|.++| .+|+.++.+. .+..|+ ....
T Consensus 806 kw~da~kla~e~~~~--e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~d 883 (1636)
T KOG3616|consen 806 KWEDAFKLAEECHGP--EATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHD 883 (1636)
T ss_pred cHHHHHHHHHHhcCc--hhHHHHHHHhHHhHHhhcchhhhhheeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhH
Confidence 233333333 345566667777777788887777665 2444444332 111122 1234
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1168 CYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1168 ~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....+|.-|...|+...|..+|-+|
T Consensus 884 t~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 884 THKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred HHHHHHHHHHhccChhHHHHHHHhh
Confidence 5567787788888777777666544
No 175
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.60 E-value=0.00017 Score=63.97 Aligned_cols=60 Identities=18% Similarity=0.308 Sum_probs=55.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+|..++..|++++|+..|++++.. +|....++..+|.++..+|++++|+.+|++++.+
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~~--------~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALKQ--------DPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHCC--------STTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 46799999999999999999999886 6888999999999999999999999999999987
No 176
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.54 E-value=0.001 Score=80.06 Aligned_cols=118 Identities=24% Similarity=0.213 Sum_probs=98.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
-.++...++++.|+.++++..+. +|+ +...||.++...++-.+|+..+++++.. .|.....
T Consensus 176 l~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~L 236 (395)
T PF09295_consen 176 LKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSEL 236 (395)
T ss_pred HHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHHH
Confidence 34455667899999888886554 344 4456899999999999999999999954 3555778
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
+...|.++...++++.|+.+.++|+.+ .|....+|+.||.+|..+|+++.|+..++.
T Consensus 237 L~~Qa~fLl~k~~~~lAL~iAk~av~l--------sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs 293 (395)
T PF09295_consen 237 LNLQAEFLLSKKKYELALEIAKKAVEL--------SPSEFETWYQLAECYIQLGDFENALLALNS 293 (395)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHh--------CchhHHHHHHHHHHHHhcCCHHHHHHHHhc
Confidence 888999999999999999999999987 478889999999999999999999987764
No 177
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.53 E-value=0.00043 Score=77.72 Aligned_cols=102 Identities=20% Similarity=0.200 Sum_probs=92.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+++.|.-++..|+|.+|..-|+.-+.-+ ++++.+..+++.||.+++.+|+|+.|...|..++.-+ +++|.
T Consensus 144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P~s~K 213 (262)
T COG1729 144 LYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----PKSPK 213 (262)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----CCCCC
Confidence 6778888889999999999999998874 6678889999999999999999999999999998754 66788
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+++.||.+..++|+.++|...|+++++.+
T Consensus 214 ApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 214 APDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 88999999999999999999999999998865
No 178
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.49 E-value=0.017 Score=61.30 Aligned_cols=202 Identities=21% Similarity=0.252 Sum_probs=147.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
........+..+...+++..+...+..++.. ...+.....+..++..+...+++..|+..+.+++....
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 126 (291)
T COG0457 58 LAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDP----- 126 (291)
T ss_pred chHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCC-----
Confidence 3556677888999999999999999988874 12456678888999999999999999999998887521
Q ss_pred CChhHHHHHHHHHH-HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMAL-FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~-~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.. .......+. ++...|+++.|..++.+++... +........+..++..+...++++.|+..+.+++....
T Consensus 127 -~~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~ 198 (291)
T COG0457 127 -DP--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEALLALGALLEALGRYEEALELLEKALKLNP 198 (291)
T ss_pred -Cc--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCc
Confidence 11 222333344 8999999999999999996521 10124555667777778999999999999999998763
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFN 1235 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~ 1235 (1403)
.. ....+..++..+...+++..|+..+..++..... .......++..+ ...+.+.++..
T Consensus 199 ~~-------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~~~~~~~~~------~~~~~~~~~~~ 257 (291)
T COG0457 199 DD-------DAEALLNLGLLYLKLGKYEEALEYYEKALELDPD--------NAEALYNLALLL------LELGRYEEALE 257 (291)
T ss_pred cc-------chHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc--------cHHHHhhHHHHH------HHcCCHHHHHH
Confidence 21 4567889999999999999999999999886432 222233333333 34556777776
Q ss_pred HHH
Q 000589 1236 AAS 1238 (1403)
Q Consensus 1236 ~l~ 1238 (1403)
.+.
T Consensus 258 ~~~ 260 (291)
T COG0457 258 ALE 260 (291)
T ss_pred HHH
Confidence 666
No 179
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.48 E-value=0.0005 Score=60.94 Aligned_cols=61 Identities=21% Similarity=0.286 Sum_probs=54.7
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|..++..|++++|+.+|++++. .+|....+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 ~~~a~~~~~~g~~~~A~~~~~~~l~--------~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 1 YALARALYQQGDYDEAIAAFEQALK--------QDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHHHCTHHHHHHHHHHHHHC--------CSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred ChHHHHHHHcCCHHHHHHHHHHHHH--------HCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 3589999999999999999999984 468899999999999999999999999999999864
No 180
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.48 E-value=0.0048 Score=80.74 Aligned_cols=172 Identities=14% Similarity=0.154 Sum_probs=123.0
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
+|..+..|.+.-.++...++.++|.+..++||....-.-+...-+++.+|.||-.+| |.-+.-.+.|++|.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 566667777777788899999999999999997642111122344566666666655 455666678888887763
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
....|..|..+|..-+.+++|.++|+..++-|. +....+...+.+. ..+.+-+.|...+
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fL------l~~ne~~aa~~lL 1587 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFL------LRQNEAEAARELL 1587 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHH------hcccHHHHHHHHH
Confidence 235788899999999999999999998887654 2233333444443 5666667777777
Q ss_pred HHHHHHHHHhh--ChHHHHHHHHHH-HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKA--HPDLIHAFQAVA-AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~--~p~~~~a~~~La-~~G~~~eA~~~~ekAL~ 1277 (1403)
. +||..++. |-+...-...|- +.|+.+.+..+|+..+.
T Consensus 1588 ~--rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ 1628 (1710)
T KOG1070|consen 1588 K--RALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLS 1628 (1710)
T ss_pred H--HHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHh
Confidence 7 88888874 777776666666 88999999888888776
No 181
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.47 E-value=0.034 Score=70.94 Aligned_cols=225 Identities=13% Similarity=-0.005 Sum_probs=145.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
..|...--.|.+...+|+++.|+++.+.++...-. ......+.++..+|.+..-.|++++|..+.+++.++.++.-
T Consensus 456 l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~---~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~- 531 (894)
T COG2909 456 LLAEFQALRAQVALNRGDPEEAEDLARLALVQLPE---AAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHD- 531 (894)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhccc---ccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcc-
Confidence 34555555788999999999999999999987432 22334567899999999999999999999999999877642
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD---VAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~---~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
..+....+....+.++..+|+. |......+............+. ...++..+..++.+ ++.+..-....++
T Consensus 532 -~~~l~~~~~~~~s~il~~qGq~--~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r---~~~~~~ear~~~~ 605 (894)
T COG2909 532 -VYHLALWSLLQQSEILEAQGQV--ARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLR---LDLAEAEARLGIE 605 (894)
T ss_pred -cHHHHHHHHHHHHHHHHHhhHH--HHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHH---HhhhhHHhhhcch
Confidence 1234456667788999999933 3333333333332222222222 33333333333333 7777777777776
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1153 KNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1153 l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
+..... +........+..||.++...|++++|...+.+....+...- .|.............| ...+|+...
T Consensus 606 ~~~~~~-~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~--~~~~~~a~~~~v~~~l-----wl~qg~~~~ 677 (894)
T COG2909 606 VGSVYT-PQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQ--YHVDYLAAAYKVKLIL-----WLAQGDKEL 677 (894)
T ss_pred hhhhcc-cchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCC--CCchHHHHHHHhhHHH-----hcccCCHHH
Confidence 654322 22223333346999999999999999999999888765421 3444333333333332 378888888
Q ss_pred HHHHHH
Q 000589 1233 AFNAAS 1238 (1403)
Q Consensus 1233 Ai~~l~ 1238 (1403)
|...+.
T Consensus 678 a~~~l~ 683 (894)
T COG2909 678 AAEWLL 683 (894)
T ss_pred HHHHHH
Confidence 776555
No 182
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.46 E-value=0.00082 Score=75.54 Aligned_cols=106 Identities=17% Similarity=0.154 Sum_probs=95.7
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+|+.|.-++..|+|.+|...|..-+..+ |..+....++++||.+++.+|+|+.|...|..++.-+ +
T Consensus 140 ~~~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~Y-----P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-----P 209 (262)
T COG1729 140 PATKLYNAALDLYKSGDYAEAEQAFQAFIKKY-----PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-----P 209 (262)
T ss_pred chhHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-----C
Confidence 45569999999999999999999999988874 6678889999999999999999999999999998864 6
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
+++....++..||.+...+|+.++|-..|++++.-+
T Consensus 210 ~s~KApdallKlg~~~~~l~~~d~A~atl~qv~k~Y 245 (262)
T COG1729 210 KSPKAPDALLKLGVSLGRLGNTDEACATLQQVIKRY 245 (262)
T ss_pred CCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHHC
Confidence 778888999999999999999999999999998754
No 183
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.41 E-value=0.0076 Score=65.72 Aligned_cols=153 Identities=17% Similarity=0.160 Sum_probs=105.1
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+++++|.++|.+|-.+ |....++..|=..|.+|-.+..+.. +..+.+.+|...+.+
T Consensus 28 ~k~eeAadl~~~Aan~----------------------yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~c 83 (288)
T KOG1586|consen 28 NKYEEAAELYERAANM----------------------YKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANC 83 (288)
T ss_pred cchHHHHHHHHHHHHH----------------------HHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHH
Confidence 3566777666666554 3444455566666666666554432 334566777777777
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHHhCCCc-HHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI-GKMDTALRYLQEALKKNERLLGEEH-IQTAVCY 1169 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~-g~~deAl~~lekAL~l~~~~~G~~~-~~~a~~~ 1169 (1403)
|.. .++.+|..+++++++++... | .-...+..+..||.+|..- .++++|+.+|++|-+.+.. ++. ...-.++
T Consensus 84 ykk-~~~~eAv~cL~~aieIyt~~-G-rf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~---ees~ssANKC~ 157 (288)
T KOG1586|consen 84 YKK-VDPEEAVNCLEKAIEIYTDM-G-RFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKG---EESVSSANKCL 157 (288)
T ss_pred hhc-cChHHHHHHHHHHHHHHHhh-h-HHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcc---hhhhhhHHHHH
Confidence 655 49999999999999998664 2 2233456677889998865 9999999999999998743 222 2233466
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1170 HALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
...|..-...++|.+|+..|++...
T Consensus 158 lKvA~yaa~leqY~~Ai~iyeqva~ 182 (288)
T KOG1586|consen 158 LKVAQYAAQLEQYSKAIDIYEQVAR 182 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777778888889988888887654
No 184
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=97.41 E-value=0.13 Score=63.31 Aligned_cols=107 Identities=17% Similarity=0.243 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHH------HHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSR------ALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~r------AL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
..|-.-|.+|....++++|+++|++ |+++.+-.+. ..+...--..|.-+...|+++.|+..|-+|-.+.+.
T Consensus 662 elydkagdlfeki~d~dkale~fkkgdaf~kaielarfafp---~evv~lee~wg~hl~~~~q~daainhfiea~~~~ka 738 (1636)
T KOG3616|consen 662 ELYDKAGDLFEKIHDFDKALECFKKGDAFGKAIELARFAFP---EEVVKLEEAWGDHLEQIGQLDAAINHFIEANCLIKA 738 (1636)
T ss_pred HHHHhhhhHHHHhhCHHHHHHHHHcccHHHHHHHHHHhhCc---HHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhhHHHH
Confidence 3455667778888889999998765 5555554432 234444455677888899999999887655433221
Q ss_pred H---hCCC-------------cHHH-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1157 L---LGEE-------------HIQT-AVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1157 ~---~G~~-------------~~~~-a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
+ .|.. ...+ ...|-.+|.-|...|+|+.|.++|.++
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~ 791 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA 791 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc
Confidence 1 1111 0111 123456788899999999998888765
No 185
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.40 E-value=0.021 Score=62.43 Aligned_cols=185 Identities=12% Similarity=0.056 Sum_probs=127.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..+...|..|....+|..|=..|.+|-.+..+.. ...+.+.+|...+.+|... +..+|+..++++++|+.+...
T Consensus 34 adl~~~Aan~yklaK~w~~AG~aflkaA~~h~k~~--skhDaat~YveA~~cykk~-~~~eAv~cL~~aieIyt~~Gr-- 108 (288)
T KOG1586|consen 34 AELYERAANMYKLAKNWSAAGDAFLKAADLHLKAG--SKHDAATTYVEAANCYKKV-DPEEAVNCLEKAIEIYTDMGR-- 108 (288)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcC--CchhHHHHHHHHHHHhhcc-ChHHHHHHHHHHHHHHHhhhH--
Confidence 44555667888888889999999999998877653 3346778888888777655 999999999999999876421
Q ss_pred ChhHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGL-NQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~-G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
-...+.-+..+|.+|..- .++++|+.+|++|-+.+..- ......-.++...|..-..+++|.+|+..|++..+....
T Consensus 109 f~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~e--es~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~ 186 (288)
T KOG1586|consen 109 FTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGE--ESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLD 186 (288)
T ss_pred HHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcch--hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 122345566889988765 89999999999999876431 112223456667788888899999999999987764321
Q ss_pred HhCCCcHH--HHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1157 LLGEEHIQ--TAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1157 ~~G~~~~~--~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
..-.. .-..++.-|.++....+.-.+...+++-
T Consensus 187 ---n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky 221 (288)
T KOG1586|consen 187 ---NNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKY 221 (288)
T ss_pred ---chHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHH
Confidence 11111 1122345566676666665554444443
No 186
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=97.39 E-value=0.011 Score=77.69 Aligned_cols=205 Identities=14% Similarity=0.056 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+|+-+..+...-..+.+.++.++|....++||....-.-+...-..+.+|.||=..| |.-+.-.+.|+||.+++.
T Consensus 1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~y---G~eesl~kVFeRAcqycd-- 1528 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAY---GTEESLKKVFERACQYCD-- 1528 (1710)
T ss_pred CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhh---CcHHHHHHHHHHHHHhcc--
Confidence 455555555555567788999999999999997641000111223455566655554 455667788999887642
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
....|..|.-+|..-+++++|.++|+..++-+. +...+|..+|..++.+.+-+.|...+++|+..
T Consensus 1529 -------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~--------q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~ 1593 (1710)
T KOG1070|consen 1529 -------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG--------QTRKVWIMYADFLLRQNEAEAARELLKRALKS 1593 (1710)
T ss_pred -------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc--------chhhHHHHHHHHHhcccHHHHHHHHHHHHHhh
Confidence 245688899999999999999999998887652 45667889999999999999999999999987
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhCh---HHHHHHHHHH-HhCChHHHHHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHP---DLIHAFQAVA-AAGGSGNSGAS 1271 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p---~~~~a~~~La-~~G~~~eA~~~ 1271 (1403)
..+ .+|-... ...+.+. ...|+.+.+..+++ ..+..+| ++..+|..+- ..|+...+..+
T Consensus 1594 lPk---~eHv~~I---skfAqLE------Fk~GDaeRGRtlfE-----gll~ayPKRtDlW~VYid~eik~~~~~~vR~l 1656 (1710)
T KOG1070|consen 1594 LPK---QEHVEFI---SKFAQLE------FKYGDAERGRTLFE-----GLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDL 1656 (1710)
T ss_pred cch---hhhHHHH---HHHHHHH------hhcCCchhhHHHHH-----HHHhhCccchhHHHHHHHHHHccCCHHHHHHH
Confidence 544 2344443 3334433 78899999999998 5555555 5555555555 77899999999
Q ss_pred HHHHHH
Q 000589 1272 ANNSLN 1277 (1403)
Q Consensus 1272 ~ekAL~ 1277 (1403)
|++++.
T Consensus 1657 feRvi~ 1662 (1710)
T KOG1070|consen 1657 FERVIE 1662 (1710)
T ss_pred HHHHHh
Confidence 999998
No 187
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=97.38 E-value=0.0022 Score=77.28 Aligned_cols=120 Identities=19% Similarity=0.109 Sum_probs=99.0
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
|-.++...+++++|+.++++.... .|+ +...|+.++...++..+|+.++.+++.. .|..+.
T Consensus 175 Ll~~l~~t~~~~~ai~lle~L~~~--------~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~--------~p~d~~ 235 (395)
T PF09295_consen 175 LLKYLSLTQRYDEAIELLEKLRER--------DPE---VAVLLARVYLLMNEEVEAIRLLNEALKE--------NPQDSE 235 (395)
T ss_pred HHHHHhhcccHHHHHHHHHHHHhc--------CCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHh--------CCCCHH
Confidence 344556678899999888885543 344 3456899999999999999999999943 355577
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.+...|..+...++++.|+.+.++|..+. |....+|+.||.+|..+|+++.|+..+..+
T Consensus 236 LL~~Qa~fLl~k~~~~lAL~iAk~av~ls--------P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 236 LLNLQAEFLLSKKKYELALEIAKKAVELS--------PSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHhC--------chhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 88899999999999999999999999876 777889999999999999999999776643
No 188
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.37 E-value=0.0006 Score=81.63 Aligned_cols=72 Identities=24% Similarity=0.221 Sum_probs=64.1
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
..|....+++|+|..|+.+|+|++|+..|++|+++ .++++....+|+|+|.+|..+|++++|+.+|++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL-----~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALEL-----NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-----CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 35678899999999999999999999999999987 3455544567999999999999999999999999997
No 189
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.37 E-value=0.0019 Score=75.17 Aligned_cols=166 Identities=17% Similarity=0.166 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
.....|.++...|++++|+.++.+. ....+......+|..+++++.|.+.++.+..+ .+|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 4455667888889999888877653 12234445667888999999999888776432 222
Q ss_pred HHHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIG--KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g--~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
..-+....|++....| .+.+|..+|++.... .+.+..++..+|.++..+|+|++|...+++|+..
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~--------~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~---- 230 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK--------FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEK---- 230 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC--------S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc--------cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh----
Confidence 2222233344444444 688888888885432 2345667888999999999999999998888652
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcH-HHHHHHHHHHHHHHHHhhChHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQK-GQAFNAASTQKAIDILKAHPDL 1252 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~-~eAi~~l~~qkALei~~~~p~~ 1252 (1403)
++....++.++..+. ...|+. +.+.+++. +.....+.||..
T Consensus 231 ----~~~~~d~LaNliv~~------~~~gk~~~~~~~~l~--qL~~~~p~h~~~ 272 (290)
T PF04733_consen 231 ----DPNDPDTLANLIVCS------LHLGKPTEAAERYLS--QLKQSNPNHPLV 272 (290)
T ss_dssp -----CCHHHHHHHHHHHH------HHTT-TCHHHHHHHH--HCHHHTTTSHHH
T ss_pred ----ccCCHHHHHHHHHHH------HHhCCChhHHHHHHH--HHHHhCCCChHH
Confidence 233345666777666 666776 33444444 222333445543
No 190
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=97.36 E-value=0.00094 Score=77.78 Aligned_cols=168 Identities=14% Similarity=0.058 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.....|.++...|++++|++++.+. ....+......+|..+++++.|...++++-++ ..|
T Consensus 104 ~~~~~A~i~~~~~~~~~AL~~l~~~-------------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~-----~eD-- 163 (290)
T PF04733_consen 104 VQLLAATILFHEGDYEEALKLLHKG-------------GSLELLALAVQILLKMNRPDLAEKELKNMQQI-----DED-- 163 (290)
T ss_dssp HHHHHHHHHCCCCHHHHHHCCCTTT-------------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-----SCC--
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHcc-------------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc-----CCc--
Confidence 4455678888899999999888653 12355666788999999999999888775433 222
Q ss_pred hHHHHHHHHHHHHHHCC--CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLN--QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G--~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
..-+....|++.+..| .+.+|..+|++... ..+....+++.+|.++..+|+|++|...+++|+...
T Consensus 164 -~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--------~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~--- 231 (290)
T PF04733_consen 164 -SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--------KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKD--- 231 (290)
T ss_dssp -HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--------CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC----
T ss_pred -HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--------ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhc---
Confidence 2223333444544444 68999999988532 223456778999999999999999999999987532
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAF-KLSHQHEKKTYDILVKQLGEEDSRTKD 1209 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~-~eAi~~lkkAl~i~~~~lg~~~~~t~~ 1209 (1403)
+....++.|++.+....|+. +.+.+++.+... ..++|+.+..
T Consensus 232 -----~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~-----~~p~h~~~~~ 274 (290)
T PF04733_consen 232 -----PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQ-----SNPNHPLVKD 274 (290)
T ss_dssp -----CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH-----HTTTSHHHHH
T ss_pred -----cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHH-----hCCCChHHHH
Confidence 44566888999999999998 455556555433 2467776654
No 191
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=97.36 E-value=1 Score=58.40 Aligned_cols=289 Identities=14% Similarity=0.021 Sum_probs=175.0
Q ss_pred CCHHHHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000589 1035 MHREVANCCRYLAMVLY-HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~-~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~ 1113 (1403)
.....+.++..||.+++ ...++++|..++.|++.+.++ .+- ......+...++.++...+... |+.++++++...+
T Consensus 54 ~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~-~~~-~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~ 130 (608)
T PF10345_consen 54 SPRQEARVRLRLASILLEETENLDLAETYLEKAILLCER-HRL-TDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSE 130 (608)
T ss_pred CHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccc-cch-HHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHh
Confidence 34456889999999987 789999999999999999766 111 1123455667899999888877 9999999998876
Q ss_pred hhcCCCCHHHHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINV-AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nL-A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
.. .+......+..+ ...+...+++..|++.++....+.... | +......+....+.+....+..+++++..+++
T Consensus 131 ~~---~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~-~-d~~~~v~~~l~~~~l~l~~~~~~d~~~~l~~~ 205 (608)
T PF10345_consen 131 TY---GHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQR-G-DPAVFVLASLSEALLHLRRGSPDDVLELLQRA 205 (608)
T ss_pred cc---CchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhc-C-CHHHHHHHHHHHHHHHhcCCCchhHHHHHHHH
Confidence 52 223333333334 333333389999999999998877532 2 22233444555567777788889999999999
Q ss_pred HHHHHHH--hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH-HHHHHHHHhhCh-------------------
Q 000589 1193 YDILVKQ--LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS-TQKAIDILKAHP------------------- 1250 (1403)
Q Consensus 1193 l~i~~~~--lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~-~qkALei~~~~p------------------- 1250 (1403)
....... -+..++....++..+-.+. .....|++..+...+. +++.++.....+
T Consensus 206 ~~~~~~~q~~~~~~~~qL~~~~lll~l~----~~l~~~~~~~~~~~L~~lq~~~~~~~~~~~w~~~~~d~~i~l~~~~~~ 281 (608)
T PF10345_consen 206 IAQARSLQLDPSVHIPQLKALFLLLDLC----CSLQQGDVKNSKQKLKQLQQFLDEIKKSPSWPSWDEDGSIPLNIGEGS 281 (608)
T ss_pred HHHHhhcccCCCCCcHHHHHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHHHHHhhcCccCCCcCCCeeEEeeccccc
Confidence 7766643 1222333344444433332 1255667666666554 333333333221
Q ss_pred ---------------HHHHHHH----HHH--HhCChHHHHHHHHHHHH--HhhcCCCCccccchHHHHHHHHHHHH----
Q 000589 1251 ---------------DLIHAFQ----AVA--AAGGSGNSGASANNSLN--AALLGETLPRGRGFDERAARAAAEVR---- 1303 (1403)
Q Consensus 1251 ---------------~~~~a~~----~La--~~G~~~eA~~~~ekAL~--~~~~G~~~p~~~~~~era~~a~~e~r---- 1303 (1403)
....++. .+. ..+..++|..+++++++ .............+...+.......+
T Consensus 282 ~~~~~~~~~f~wl~~~~l~~L~y~lS~l~~~~~~~~~ks~k~~~k~l~~i~~~~~~~~~~~~~sl~~~~~~~~~~~~l~~ 361 (608)
T PF10345_consen 282 SNSGGTPLVFSWLPKEELYALVYFLSGLHNLYKGSMDKSEKFLEKALKQIEKLKIKSPSAPSESLSEASERIQWLRYLQC 361 (608)
T ss_pred ccCCCceeEEeecCHHHHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHhhccCCCCCCcCHHHHHHhHHHHHHHHH
Confidence 0001111 111 45666699999999999 22221222222222222222112211
Q ss_pred HHHHHhhHHHhhCCCchhhhHHHHHHHHHHhc
Q 000589 1304 KKAVAKGLLIRPHGLPAQALPPLTQLLNIINS 1335 (1403)
Q Consensus 1304 ~l~~a~G~~~~~~g~~~eA~~~l~qaL~i~~s 1335 (1403)
.+....+......+++..|...+.++......
T Consensus 362 ~~~~y~~~~~~~~~~~~~a~~~l~~~~~~~~~ 393 (608)
T PF10345_consen 362 YLLFYQIWCNFIRGDWSKATQELEFMRQLCQR 393 (608)
T ss_pred HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHhc
Confidence 22233367777789998998888888877664
No 192
>PRK11906 transcriptional regulator; Provisional
Probab=97.35 E-value=0.0037 Score=75.19 Aligned_cols=132 Identities=9% Similarity=-0.062 Sum_probs=103.6
Q ss_pred HHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---------CCHHHHHHHHHHHHH
Q 000589 1043 CRYLAMVLYHAG---DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---------NQTELALRHMSRALL 1110 (1403)
Q Consensus 1043 ~~~LA~iy~~~G---~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---------G~~~eAl~~l~rAL~ 1110 (1403)
++..|...+..+ ..+.|+.++.+|+... .-.|+.+.+|..+|.|++.. .+..+|.++.++|++
T Consensus 258 ~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~-----~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve 332 (458)
T PRK11906 258 EMLAGKKELYDFTPESIYRAMTIFDRLQNKS-----DIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD 332 (458)
T ss_pred HHHHHHHHhhccCHHHHHHHHHHHHHHhhcc-----cCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh
Confidence 344555554443 3457777888887332 22688899999999998753 234566777777776
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1111 LLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1111 l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
+ ++..+.++..+|.++...++++.|+.+|++|+.+. |+.+.+++..|.+....|+.++|+++++
T Consensus 333 l--------d~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~--------Pn~A~~~~~~~~~~~~~G~~~~a~~~i~ 396 (458)
T PRK11906 333 I--------TTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHS--------TDIASLYYYRALVHFHNEKIEEARICID 396 (458)
T ss_pred c--------CCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcC--------CccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 5 35556778999999999999999999999999876 7889999999999999999999999999
Q ss_pred HHHHH
Q 000589 1191 KTYDI 1195 (1403)
Q Consensus 1191 kAl~i 1195 (1403)
+|+++
T Consensus 397 ~alrL 401 (458)
T PRK11906 397 KSLQL 401 (458)
T ss_pred HHhcc
Confidence 99985
No 193
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=97.34 E-value=0.027 Score=63.00 Aligned_cols=173 Identities=15% Similarity=0.108 Sum_probs=128.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+..+++-|....+.|+|++|+.+|+...... +-.|..-++...++..++..++|++|+.+..+-+.+. +.
T Consensus 34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~-----p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~ly-----P~ 103 (254)
T COG4105 34 ASELYNEGLTELQKGNYEEAIKYFEALDSRH-----PFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLY-----PT 103 (254)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-----CCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC-----CC
Confidence 4567777888889999999999999876431 3345567889999999999999999999999998874 67
Q ss_pred CHHHHHHHHHHHHHHHHc-----CCHH---HHHHHHHHHHHHHHHHhCCCcH--------------HHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDI-----GKMD---TALRYLQEALKKNERLLGEEHI--------------QTAVCYHALAIAFN 1177 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~-----g~~d---eAl~~lekAL~l~~~~~G~~~~--------------~~a~~~~~LA~~y~ 1177 (1403)
||+...+++..|.++... .+.. +|+.-|++.+..+ |++. ..+.--..+|..|.
T Consensus 104 ~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ry-----PnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~ 178 (254)
T COG4105 104 HPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRY-----PNSRYAPDAKARIVKLNDALAGHEMAIARYYL 178 (254)
T ss_pred CCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHC-----CCCcchhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999887653 2333 4444444444332 2221 12223356789999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1178 CMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1178 ~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
..|.+-.|+..+++.++-+ ++.+.+.+++..|...| ...|-.++|.....
T Consensus 179 kr~~~~AA~nR~~~v~e~y-----~~t~~~~eaL~~l~eaY------~~lgl~~~a~~~~~ 228 (254)
T COG4105 179 KRGAYVAAINRFEEVLENY-----PDTSAVREALARLEEAY------YALGLTDEAKKTAK 228 (254)
T ss_pred HhcChHHHHHHHHHHHhcc-----ccccchHHHHHHHHHHH------HHhCChHHHHHHHH
Confidence 9999999999999988754 34567778888888887 77888888875443
No 194
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.29 E-value=0.00076 Score=80.75 Aligned_cols=72 Identities=19% Similarity=0.154 Sum_probs=63.9
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1035 MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
..|..+.+++++|.+|+.+|+|++|+..|++|+.+. +++.+...+|+|+|.+|..+|++++|+.++++|+++
T Consensus 70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~-----Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELN-----PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-----CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467788999999999999999999999999999983 444444467999999999999999999999999986
No 195
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=97.28 E-value=0.0089 Score=64.43 Aligned_cols=99 Identities=22% Similarity=0.193 Sum_probs=87.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
...|..+++.|..|-..|-+.-|.--|.+++.+ .|..+.+++.||..+...|+|+.|.+.|...+++
T Consensus 62 eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL----- 128 (297)
T COG4785 62 EERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL----- 128 (297)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc-----
Confidence 456889999999999999999999999999998 6788899999999999999999999999988887
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL 1109 (1403)
+|..--+..|.|..++.-|+|.-|.+-+.+-.
T Consensus 129 ---Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fY 160 (297)
T COG4785 129 ---DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFY 160 (297)
T ss_pred ---CCcchHHHhccceeeeecCchHhhHHHHHHHH
Confidence 46666778889999999999999988776544
No 196
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.28 E-value=0.0034 Score=64.46 Aligned_cols=106 Identities=19% Similarity=0.228 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
-+..++..|...+..|+|++|++.|+.....+ +..+....+...|+.+|+..+++++|+..+++-+++ .+
T Consensus 9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP 78 (142)
T PF13512_consen 9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HP 78 (142)
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CC
Confidence 36778899999999999999999998876653 445566788999999999999999999999999988 47
Q ss_pred CChhHHHHHHHHHHHHHHCCC---------------HHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQ---------------TELALRHMSRALLLL 1112 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~---------------~~eAl~~l~rAL~l~ 1112 (1403)
.||....+++..|.+++.+.. ..+|...|++.+..+
T Consensus 79 ~hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 79 THPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 889999999999999998876 777888887777653
No 197
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.27 E-value=0.0035 Score=66.64 Aligned_cols=104 Identities=20% Similarity=0.197 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~ 1076 (1403)
.+..+-.-|.-++..|+|++|..-|.+||.++.... ......+|.+.|.+...++.++.|+.-+.+||.+
T Consensus 94 kad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel------- 163 (271)
T KOG4234|consen 94 KADSLKKEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIEL------- 163 (271)
T ss_pred HHHHHHHHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhc-------
Confidence 356667789999999999999999999999975432 3556788999999999999999999999999998
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.|....++...|.+|..+.+|++|+.-|++.+++
T Consensus 164 -~pty~kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 164 -NPTYEKALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred -CchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 4778888999999999999999999999999875
No 198
>PRK15331 chaperone protein SicA; Provisional
Probab=97.27 E-value=0.0014 Score=68.66 Aligned_cols=101 Identities=13% Similarity=-0.016 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
..+.....+..|.-++..|++++|..+|+-.+.+ .+.....+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~--------d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY--------DFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--------CcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 5677888899999999999999999999876664 23334567899999999999999999999998753
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
.++|. ..+..|.||..+|+...|+.+|+.++.
T Consensus 102 --~~dp~---p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDYR---PVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCCC---ccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 23333 378899999999999999999999987
No 199
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=97.27 E-value=0.11 Score=55.01 Aligned_cols=228 Identities=20% Similarity=0.234 Sum_probs=155.3
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.+.+..+...+..++..... ......+..++..+...+++..+...+..++.. ...+.....+..++.
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 103 (291)
T COG0457 36 LGELAEALELLEEALELLPN------SDLAGLLLLLALALLKLGRLEEALELLEKALEL------ELLPNLAEALLNLGL 103 (291)
T ss_pred HhhHHHHHHHHHHHHhcCcc------ccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh------hhccchHHHHHHHHH
Confidence 34556666666665554211 024567788899999999999999999998874 123566778889999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~ 1169 (1403)
++...+++..|+..+..++..... . .......+. ++...|+++.|..+|.+++... +........+
T Consensus 104 ~~~~~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~ 170 (291)
T COG0457 104 LLEALGKYEEALELLEKALALDPD------P--DLAEALLALGALYELGDYEEALELYEKALELD-----PELNELAEAL 170 (291)
T ss_pred HHHHHhhHHHHHHHHHHHHcCCCC------c--chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-----CCccchHHHH
Confidence 999999999999999998864211 1 222333344 8999999999999999996522 1012345566
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhC
Q 000589 1170 HALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAH 1249 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~ 1249 (1403)
..++..+...+++..|+..+.+++...... .......++..+ ...+++.+|+..+. +++...+..
T Consensus 171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~~~a~~~~~--~~~~~~~~~ 235 (291)
T COG0457 171 LALGALLEALGRYEEALELLEKALKLNPDD-------DAEALLNLGLLY------LKLGKYEEALEYYE--KALELDPDN 235 (291)
T ss_pred HHhhhHHHHhcCHHHHHHHHHHHHhhCccc-------chHHHHHhhHHH------HHcccHHHHHHHHH--HHHhhCccc
Confidence 667777889999999999999998864321 344455666665 67778889988888 555544431
Q ss_pred hHHHHHHH-HHHHhCChHHHHHHHHHHHHH
Q 000589 1250 PDLIHAFQ-AVAAAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1250 p~~~~a~~-~La~~G~~~eA~~~~ekAL~~ 1278 (1403)
........ .+...+.+.+|...+.+++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 236 AEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 11111111 111556788888888888873
No 200
>PRK15331 chaperone protein SicA; Provisional
Probab=97.26 E-value=0.0014 Score=68.55 Aligned_cols=101 Identities=12% Similarity=-0.109 Sum_probs=83.0
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
....-..++..|.-++.+|++++|..+|+-..-. ++ ...+.+..||.++..+++|++|+..|-.|..+.
T Consensus 33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~-----d~---~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~--- 101 (165)
T PRK15331 33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIY-----DF---YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL--- 101 (165)
T ss_pred CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh-----Cc---CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---
Confidence 3445677888999999999999999999865543 33 334567899999999999999999999998873
Q ss_pred cCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1074 lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
.++| ...+..|.||+.+|+...|+.+|..++.
T Consensus 102 --~~dp---~p~f~agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 102 --KNDY---RPVFFTGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred --cCCC---CccchHHHHHHHhCCHHHHHHHHHHHHh
Confidence 2333 3477899999999999999999999986
No 201
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.26 E-value=0.00045 Score=55.22 Aligned_cols=42 Identities=36% Similarity=0.424 Sum_probs=29.0
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
++.++.+||.+|..+|++++|+.++++++.+.++.+|.+||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 367899999999999999999999999999999999999985
No 202
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=97.24 E-value=0.00051 Score=54.89 Aligned_cols=42 Identities=38% Similarity=0.489 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
++.++.+||.+|..+|++++|+.++++++.+.+.++|++||+
T Consensus 1 ta~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~G~~Hpd 42 (42)
T PF13374_consen 1 TASALNNLANAYRAQGRYEEALELLEEALEIRERLLGPDHPD 42 (42)
T ss_dssp -HHHHHHHHHHHHHCT-HHHHHHHHHHHHHHH----------
T ss_pred CHHHHHHHHHHHHhhhhcchhhHHHHHHHHHHHHHhcccccC
Confidence 357899999999999999999999999999999999999985
No 203
>KOG3965 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.16 E-value=0.00077 Score=67.70 Aligned_cols=80 Identities=29% Similarity=0.427 Sum_probs=65.9
Q ss_pred ccceecccccCCCCcccccCCcEEEEEEEEeCCcEEEEEEecCceEeecCCCCccCCCCCCCC---CCcccHHHHHHHhc
Q 000589 245 CVESIVFSSFNPSPSHRRLVGDLIYLDVVTLEGHKYCITGTTKMFYVNSSTGNVLDPRPSKAN---SEATTLIGLLQKIS 321 (1403)
Q Consensus 245 ~~~~~~~S~~nPpp~~~~~~Gdl~yl~v~t~eg~~~~ita~~~GFyvn~s~~~~fdp~p~~~~---~~~hsL~~Ll~~~S 321 (1403)
.|..|.+|..=|- -.||+||.|+|+|+..|||--+.+||=|-+|-..-||---..-. ..+-|++.||..||
T Consensus 47 ~V~~i~VSe~Lp~------~~dliyiNV~T~E~~~yCleLT~kG~rIvS~~~d~~ngd~~~~~l~t~yyes~y~LLd~IS 120 (160)
T KOG3965|consen 47 AVQHISVSEMLPR------TSDLIYINVRTLEQVPYCLELTRKGWRIVSSRYDCMNGDFTEDDLHTKYYESAYQLLDDIS 120 (160)
T ss_pred HHHHHHHHHhcCC------CCCeEEEEeEeecCCceeeeecccceeeeccccchhcccchhhhhhhHHHhhHHHHHhhcC
Confidence 5667888887554 48999999999999999999999999999887777776433222 24789999999999
Q ss_pred HHHHHHHHH
Q 000589 322 SKFKKAFRE 330 (1403)
Q Consensus 322 ~~F~~~~~~ 330 (1403)
|.|+..|-.
T Consensus 121 P~y~E~Fg~ 129 (160)
T KOG3965|consen 121 PLYRERFGN 129 (160)
T ss_pred hHHHHHHHH
Confidence 999999975
No 204
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.15 E-value=0.0047 Score=70.38 Aligned_cols=123 Identities=19% Similarity=0.133 Sum_probs=96.1
Q ss_pred hhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHH
Q 000589 988 VKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---GDMAGAIMQQH 1064 (1403)
Q Consensus 988 vK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---G~~~eAi~~~~ 1064 (1403)
-.++..++.+++.+..+|.+|+.+|++..|...|.+|+.+ .++....+..+|.+++.+ ....+|...++
T Consensus 146 e~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL--------~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~ 217 (287)
T COG4235 146 ETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRL--------AGDNPEILLGLAEALYYQAGQQMTAKARALLR 217 (287)
T ss_pred HHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 3455566677999999999999999999999999999998 334455667777776654 34578999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+++.. +|..+.+++.||..++..|+|.+|...++..+... .++.|....+-..+
T Consensus 218 ~al~~--------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~i 271 (287)
T COG4235 218 QALAL--------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSI 271 (287)
T ss_pred HHHhc--------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHH
Confidence 99886 46778899999999999999999999999988753 34555544433333
No 205
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=97.09 E-value=0.17 Score=58.84 Aligned_cols=142 Identities=18% Similarity=0.179 Sum_probs=100.0
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHH-h-cCCCCh----h
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG-DMAGAIMQQHKELIINER-C-LGLDHP----D 1080 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G-~~~eAi~~~~kAL~i~er-~-lg~d~p----~ 1080 (1403)
...+|+++.|..++.++-.+............+..+++.|...+..+ ++++|..++++|+++.+. . ....++ -
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999999999887653322334457889999999999999 999999999999999765 1 112233 3
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...++..|+.+|...+.++...+ ..+++......+| ++|..... .+-.+ ...++.+++.+.+.+.+.-.
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~-~~~~~~~L--~l~il-~~~~~~~~~~~~L~~mi~~~ 151 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYG-NKPEVFLL--KLEIL-LKSFDEEEYEEILMRMIRSV 151 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCC-CCcHHHHH--HHHHH-hccCChhHHHHHHHHHHHhc
Confidence 46778889999999998865555 4455555555443 34544322 22222 22788898888888887643
No 206
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=97.05 E-value=0.0067 Score=62.28 Aligned_cols=105 Identities=17% Similarity=0.147 Sum_probs=87.8
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
...++.-|.-.+..|+|.+|+..++.....+ +-.+...++...|+.+|+..++|++|+..+++-+.+ .+.
T Consensus 10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ry-----P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirL-----hP~ 79 (142)
T PF13512_consen 10 PQELYQEAQEALQKGNYEEAIKQLEALDTRY-----PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRL-----HPT 79 (142)
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC-----CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Confidence 4567788889999999999999998876543 334556788999999999999999999999999986 488
Q ss_pred CHHHHHHHHHHHHHHHHcCC---------------HHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGK---------------MDTALRYLQEALKKN 1154 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~---------------~deAl~~lekAL~l~ 1154 (1403)
||.+..+++..|.++..+.. ..+|...|++.++..
T Consensus 80 hp~vdYa~Y~~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~y 129 (142)
T PF13512_consen 80 HPNVDYAYYMRGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRY 129 (142)
T ss_pred CCCccHHHHHHHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHC
Confidence 99999999999999998876 677777777776654
No 207
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=97.00 E-value=0.0031 Score=71.57 Aligned_cols=95 Identities=16% Similarity=0.138 Sum_probs=85.0
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
+-+.|..|+.+|.|++|+++|.+++.+ .|...-.+.+.|.+|+.+..|..|..-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~--------~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAV--------YPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhcc--------CCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 667899999999999999999999988 34445578899999999999999999999999984 45
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
...+|...+..-..+|...+|.+-++.+|++
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~L 194 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLAL 194 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhh
Confidence 6889999999999999999999999999986
No 208
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=97.00 E-value=0.014 Score=66.71 Aligned_cols=119 Identities=16% Similarity=0.079 Sum_probs=92.1
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHH
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---NQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---G~~~eAl~~l~rAL~l~ 1112 (1403)
+|+.++-+..||.+|+.+|++..|..-|++|+++. ++....+..+|.+++.+ ....++...+++++.+
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~--------g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~- 222 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA--------GDNPEILLGLAEALYYQAGQQMTAKARALLRQALAL- 222 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhc-
Confidence 67778889999999999999999999999999983 34444566667666543 3467888999999864
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAI 1174 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~ 1174 (1403)
+|....+++.||..++..|+|.+|+..++..++.. .++.+....+-..++.
T Consensus 223 -------D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~l----p~~~~rr~~ie~~ia~ 273 (287)
T COG4235 223 -------DPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLL----PADDPRRSLIERSIAR 273 (287)
T ss_pred -------CCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC----CCCCchHHHHHHHHHH
Confidence 46678889999999999999999999999988864 3344444433333333
No 209
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.99 E-value=0.0053 Score=65.29 Aligned_cols=98 Identities=16% Similarity=0.078 Sum_probs=85.2
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHH
Q 000589 1087 NMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTA 1166 (1403)
Q Consensus 1087 nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a 1166 (1403)
.=|.-++..|+|.+|..-|.+||+++.... ......+|.|-|.++..++.++.|+.-..+|+++. |.+.
T Consensus 100 ~EGN~~F~ngdyeeA~skY~~Ale~cp~~~---~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~--------pty~ 168 (271)
T KOG4234|consen 100 KEGNELFKNGDYEEANSKYQEALESCPSTS---TEERSILYSNRAAALIKLRKWESAIEDCSKAIELN--------PTYE 168 (271)
T ss_pred HHHHHhhhcccHHHHHHHHHHHHHhCcccc---HHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC--------chhH
Confidence 457778999999999999999999875542 24567789999999999999999999999999986 5666
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1167 ~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.++...|.+|..+..|++|++-|++.+++
T Consensus 169 kAl~RRAeayek~ek~eealeDyKki~E~ 197 (271)
T KOG4234|consen 169 KALERRAEAYEKMEKYEEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence 77888999999999999999999998875
No 210
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.96 E-value=0.099 Score=58.51 Aligned_cols=120 Identities=16% Similarity=0.187 Sum_probs=64.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
..-|.+|.+-|++++|+...++...+ .+...--.++.++.+++-|...++++..+-..
T Consensus 112 l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided--------- 169 (299)
T KOG3081|consen 112 LLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED--------- 169 (299)
T ss_pred HHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH---------
Confidence 33456667777777777666552221 22222334555666667777766666654211
Q ss_pred HHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQD----IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1124 a~~~~nLA~iy~~----~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
.++..||..+.. -+++.+|.-+|++.-+. .+.+..++..+|.+...+|+|++|...++.|+.
T Consensus 170 -~tLtQLA~awv~la~ggek~qdAfyifeE~s~k--------~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~ 235 (299)
T KOG3081|consen 170 -ATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK--------TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALD 235 (299)
T ss_pred -HHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc--------cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHh
Confidence 123333333332 23345555555433221 133455666777777777777777777777765
No 211
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.95 E-value=0.029 Score=59.35 Aligned_cols=162 Identities=12% Similarity=-0.026 Sum_probs=114.6
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
+....+.=+.+.++.-..+.+++ .|. ..-...||.....+|++.||..+|++++.-. + ......
T Consensus 63 ~~a~~q~ldP~R~~Rea~~~~~~--------ApT-vqnr~rLa~al~elGr~~EA~~hy~qalsG~---f----A~d~a~ 126 (251)
T COG4700 63 LMALQQKLDPERHLREATEELAI--------APT-VQNRYRLANALAELGRYHEAVPHYQQALSGI---F----AHDAAM 126 (251)
T ss_pred HHHHHHhcChhHHHHHHHHHHhh--------chh-HHHHHHHHHHHHHhhhhhhhHHHHHHHhccc---c----CCCHHH
Confidence 34444444555555544454444 232 3345679999999999999999999998642 1 223456
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
+..++...+..+++..|...+++..+.-.. .........+|.+|..+|++.+|...|+.++..+.
T Consensus 127 lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp--------- 191 (251)
T COG4700 127 LLGLAQAQFAIQEFAAAQQTLEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP--------- 191 (251)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC---------
Confidence 778999999999999999999988764211 11233456789999999999999999999998751
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
........+..+..+|+.++|...+....+-..
T Consensus 192 g~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~ 224 (251)
T COG4700 192 GPQARIYYAEMLAKQGRLREANAQYVAVVDTAK 224 (251)
T ss_pred CHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHH
Confidence 123444567888999999999887776655443
No 212
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.92 E-value=0.032 Score=69.51 Aligned_cols=185 Identities=15% Similarity=0.009 Sum_probs=124.6
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH----AGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~----~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
-.|+-+.++.++.++.+ ...+.++.-....-.|+.....+.. ....+.|...+...... .|+....+
T Consensus 200 F~gdR~~GL~~L~~~~~-~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--------yP~s~lfl 270 (468)
T PF10300_consen 200 FSGDRELGLRLLWEASK-SENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--------YPNSALFL 270 (468)
T ss_pred cCCcHHHHHHHHHHHhc-cCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--------CCCcHHHH
Confidence 46899999999998865 2222111111111222222222222 34556666666666555 36777788
Q ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHH
Q 000589 1086 GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQT 1165 (1403)
Q Consensus 1086 ~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~ 1165 (1403)
...|.++...|+.++|++.|++++...... ......+++.+|.++..+.+|++|..++.+.++.. ....
T Consensus 271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-------~WSk 339 (468)
T PF10300_consen 271 FFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-------KWSK 339 (468)
T ss_pred HHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-------ccHH
Confidence 899999999999999999999988532221 12335668999999999999999999999888743 2345
Q ss_pred HHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1166 AVCYHALAIAFNCMGAF-------KLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1166 a~~~~~LA~~y~~~Gd~-------~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
+...+..|.+|...|+. ++|..+++++-....+..|..-|.-.-+...+
T Consensus 340 a~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~ 395 (468)
T PF10300_consen 340 AFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKA 395 (468)
T ss_pred HHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHH
Confidence 66778889999999999 78888888887777766664444333333333
No 213
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=96.91 E-value=1.3 Score=53.22 Aligned_cols=188 Identities=12% Similarity=0.116 Sum_probs=113.6
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN--- 1154 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~--- 1154 (1403)
||. ...+...|.+....|+...|...|.+|++.. |. +......+...|..-..++.++.|.-.|+-||+..
T Consensus 204 HP~-v~~wikyarFE~k~g~~~~aR~VyerAie~~----~~-d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~ 277 (677)
T KOG1915|consen 204 HPK-VSNWIKYARFEEKHGNVALARSVYERAIEFL----GD-DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKG 277 (677)
T ss_pred ccc-HHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh----hh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc
Confidence 554 4567888999999999999999999999875 33 34455666777777778888898888888777642
Q ss_pred ------------HHHhCCC---------------------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1155 ------------ERLLGEE---------------------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1155 ------------~~~~G~~---------------------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
++.+|.. +|..-.+++.+-.+....|+.+.-.+.|++|+.-..-. .
T Consensus 278 raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~-~ 356 (677)
T KOG1915|consen 278 RAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPA-S 356 (677)
T ss_pred cHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCch-h
Confidence 2223321 12223456666677777899998889999887631100 0
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh-ChHHHHHHHHHH----HhCChHHHHHHHHHHH
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA-HPDLIHAFQAVA----AAGGSGNSGASANNSL 1276 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~-~p~~~~a~~~La----~~G~~~eA~~~~ekAL 1276 (1403)
.......-.|.|+.... -......+.+.+.+.++ .+|++.+. +-..+..+...| ++.+...|...+-.|+
T Consensus 357 ekr~W~RYIYLWinYal---yeEle~ed~ertr~vyq--~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI 431 (677)
T KOG1915|consen 357 EKRYWRRYIYLWINYAL---YEELEAEDVERTRQVYQ--ACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI 431 (677)
T ss_pred HHHHHHHHHHHHHHHHH---HHHHHhhhHHHHHHHHH--HHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh
Confidence 00111122333333321 01245567777777777 77776652 223333333333 5556666655555554
Q ss_pred H
Q 000589 1277 N 1277 (1403)
Q Consensus 1277 ~ 1277 (1403)
.
T Consensus 432 G 432 (677)
T KOG1915|consen 432 G 432 (677)
T ss_pred c
Confidence 3
No 214
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.91 E-value=0.0039 Score=68.17 Aligned_cols=105 Identities=17% Similarity=0.165 Sum_probs=96.1
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
+..+..+-+-|..++...+|..|+..|.+|+.+ +|..+..|.+.|.+|+++.+++.+..-.++|+++
T Consensus 7 s~~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql----- 73 (284)
T KOG4642|consen 7 SESAEQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL----- 73 (284)
T ss_pred chHHHHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc-----
Confidence 445777888899999999999999999999988 7888899999999999999999999999999998
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
.|..+..++.||.+......|++|+..+.+|..+.+..
T Consensus 74 ---~~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 74 ---DPNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred ---ChHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 48889999999999999999999999999999887654
No 215
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.87 E-value=0.051 Score=65.56 Aligned_cols=129 Identities=15% Similarity=0.059 Sum_probs=101.9
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh-----
Q 000589 1006 KVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD----- 1080 (1403)
Q Consensus 1006 ~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~----- 1080 (1403)
.......+...-+++..+||++ .|+.+.+|..||.-. ..-..+|+.+|++|++..+..+|.+...
T Consensus 176 q~AWRERnp~aRIkaA~eALei--------~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~ 245 (539)
T PF04184_consen 176 QKAWRERNPQARIKAAKEALEI--------NPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGH 245 (539)
T ss_pred HHHHhcCCHHHHHHHHHHHHHh--------hhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccc
Confidence 3445677899999999999999 578888988887532 3446899999999999998887763211
Q ss_pred ------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1081 ------------TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ 1148 (1403)
Q Consensus 1081 ------------~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le 1148 (1403)
...+...||.|..++|+.++|++.++..+.... ..+...+..||-.++..++.|.++..++.
T Consensus 246 ~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~ 319 (539)
T PF04184_consen 246 FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLA 319 (539)
T ss_pred hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 134556899999999999999999999886421 12456789999999999999999998887
Q ss_pred HH
Q 000589 1149 EA 1150 (1403)
Q Consensus 1149 kA 1150 (1403)
+-
T Consensus 320 kY 321 (539)
T PF04184_consen 320 KY 321 (539)
T ss_pred Hh
Confidence 63
No 216
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.85 E-value=0.057 Score=53.12 Aligned_cols=121 Identities=21% Similarity=0.208 Sum_probs=88.4
Q ss_pred HHHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHHHHHhcCC---CCh-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1038 EVANCCRYLAMVL--YHAGDMAGAIMQQHKELIINERCLGL---DHP-DTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy--~~~G~~~eAi~~~~kAL~i~er~lg~---d~p-~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
+++.+|..|+..- ..-|-|++|...|++|..+.+.+... ||. -.+.++..|+..+..+|+|++++....+++..
T Consensus 5 eVa~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~Y 84 (144)
T PF12968_consen 5 EVAMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRY 84 (144)
T ss_dssp HHHHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence 4667777776554 45699999999999999998665322 222 23567888999999999999999999999988
Q ss_pred HHhhcCCCCHH----HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1112 LSLSSGPDHPD----VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1112 ~~~~~g~d~p~----~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
+.+. |+-|.+ .+.+.++-|..+..+|+.++|+..|+.+-++....-|
T Consensus 85 FNRR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKG 135 (144)
T PF12968_consen 85 FNRR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKG 135 (144)
T ss_dssp HHHH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S
T ss_pred Hhhc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcC
Confidence 7764 443333 4556678899999999999999999999988765544
No 217
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.15 Score=57.16 Aligned_cols=205 Identities=11% Similarity=-0.019 Sum_probs=129.4
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH----------
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE---------- 1071 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e---------- 1071 (1403)
+++++-....+++++|+..|.+.+..--..-...-.+.-.+...|+.+|...|++..--+.....-..++
T Consensus 7 le~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Ki 86 (421)
T COG5159 7 LELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKI 86 (421)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHH
Confidence 5677788888999999999988876510000001123345678899999999888543333322222111
Q ss_pred ------HhcC-CCC-hhHH--------------------HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1072 ------RCLG-LDH-PDTA--------------------HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1072 ------r~lg-~d~-p~~~--------------------~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
...+ .|+ ++.+ ..-..+..+++..|.|.+|+....-.+.-+++. .|.+..
T Consensus 87 irtLiekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~--DDK~~L 164 (421)
T COG5159 87 IRTLIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY--DDKINL 164 (421)
T ss_pred HHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh--cCccce
Confidence 1111 111 1111 112346778888999999999888887666664 456777
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
...+..-..+|....+..++...+..|.......+-|. ...+..-..-|...+...+|.-|..||-+|++-|.. +..
T Consensus 165 i~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPp-qlqa~lDL~sGIlhcdd~dyktA~SYF~Ea~Egft~--l~~ 241 (421)
T COG5159 165 ITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPP-QLQAQLDLLSGILHCDDRDYKTASSYFIEALEGFTL--LKM 241 (421)
T ss_pred eehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCH-HHHHHHHHhccceeeccccchhHHHHHHHHHhcccc--ccc
Confidence 77777778888888888888888888777665554331 122333344466677788999999999999987652 344
Q ss_pred CHHHHHHH
Q 000589 1204 DSRTKDSQ 1211 (1403)
Q Consensus 1204 ~~~t~~a~ 1211 (1403)
|.....++
T Consensus 242 d~kAc~sL 249 (421)
T COG5159 242 DVKACVSL 249 (421)
T ss_pred hHHHHHHH
Confidence 44444333
No 218
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.76 E-value=0.0065 Score=54.95 Aligned_cols=58 Identities=26% Similarity=0.303 Sum_probs=53.4
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
|..+|...++|++|+.++++++.+ +|.....+..+|.++..+|++.+|+..+++++..
T Consensus 1 l~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 1 LKQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred CHHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 467899999999999999999998 4778889999999999999999999999999976
No 219
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=96.74 E-value=0.089 Score=63.59 Aligned_cols=128 Identities=18% Similarity=0.142 Sum_probs=100.1
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH-------
Q 000589 1049 VLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP------- 1121 (1403)
Q Consensus 1049 iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p------- 1121 (1403)
-..+..+.+.-+.+.++|+++. |+-+.+|..||.- ...-..+|+.+|++|++..+..++.+..
T Consensus 177 ~AWRERnp~aRIkaA~eALei~--------pdCAdAYILLAEE--eA~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~ 246 (539)
T PF04184_consen 177 KAWRERNPQARIKAAKEALEIN--------PDCADAYILLAEE--EASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHF 246 (539)
T ss_pred HHHhcCCHHHHHHHHHHHHHhh--------hhhhHHHhhcccc--cccCHHHHHHHHHHHHHHHHHhhchhhhhhcccch
Confidence 3456678889999999999984 6777888877752 2345789999999999988777665311
Q ss_pred ----------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1122 ----------DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1122 ----------~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
-...+...||++..++|+.++|++.+++.++... ..+...+..+|..++..++.|.++...+.+
T Consensus 247 ~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p------~~~~l~IrenLie~LLelq~Yad~q~lL~k 320 (539)
T PF04184_consen 247 WEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFP------NLDNLNIRENLIEALLELQAYADVQALLAK 320 (539)
T ss_pred hhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCC------ccchhhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 1245667899999999999999999999887541 224566899999999999999999988876
Q ss_pred H
Q 000589 1192 T 1192 (1403)
Q Consensus 1192 A 1192 (1403)
-
T Consensus 321 Y 321 (539)
T PF04184_consen 321 Y 321 (539)
T ss_pred h
Confidence 3
No 220
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.73 E-value=0.045 Score=59.18 Aligned_cols=198 Identities=12% Similarity=0.057 Sum_probs=128.7
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+.+.+..++..|..|-..|-+.-|.--+.+++.+ .|....+++.||..+...|+|+.|.+.|...+++
T Consensus 61 ~eeRA~l~fERGvlYDSlGL~~LAR~DftQaLai--------~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~EL---- 128 (297)
T COG4785 61 DEERAQLLFERGVLYDSLGLRALARNDFSQALAI--------RPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL---- 128 (297)
T ss_pred hHHHHHHHHHhcchhhhhhHHHHHhhhhhhhhhc--------CCCcHHHHHHHHHHHHhcccchHHHHHhhhHhcc----
Confidence 4567888889999999999999999999999998 4788889999999999999999999999999876
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+|..-.+..|-|..+..-|+|.-|.+-+.+-..- .+++|.....+ .| -...-+..+|...+.+-.+-
T Consensus 129 ----Dp~y~Ya~lNRgi~~YY~gR~~LAq~d~~~fYQ~-----D~~DPfR~LWL-Yl---~E~k~dP~~A~tnL~qR~~~ 195 (297)
T COG4785 129 ----DPTYNYAHLNRGIALYYGGRYKLAQDDLLAFYQD-----DPNDPFRSLWL-YL---NEQKLDPKQAKTNLKQRAEK 195 (297)
T ss_pred ----CCcchHHHhccceeeeecCchHhhHHHHHHHHhc-----CCCChHHHHHH-HH---HHhhCCHHHHHHHHHHHHHh
Confidence 5666677889999999999999998877654432 23344332211 11 12233566666554433221
Q ss_pred HHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhC----hHHHHHHHHHH----HhCChHH
Q 000589 1196 LVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAH----PDLIHAFQAVA----AAGGSGN 1267 (1403)
Q Consensus 1196 ~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~----p~~~~a~~~La----~~G~~~e 1267 (1403)
+..+...+.-....|+.+... + .+. ++..-.+++ .....++..|| ..|+..+
T Consensus 196 ----~d~e~WG~~iV~~yLgkiS~e------------~--l~~--~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~ 255 (297)
T COG4785 196 ----SDKEQWGWNIVEFYLGKISEE------------T--LME--RLKADATDNTSLAEHLTETYFYLGKYYLSLGDLDE 255 (297)
T ss_pred ----ccHhhhhHHHHHHHHhhccHH------------H--HHH--HHHhhccchHHHHHHHHHHHHHHHHHHhccccHHH
Confidence 111112222222333333210 0 011 111111111 12335677777 6799999
Q ss_pred HHHHHHHHHHH
Q 000589 1268 SGASANNSLNA 1278 (1403)
Q Consensus 1268 A~~~~ekAL~~ 1278 (1403)
|..+|+-|+..
T Consensus 256 A~~LfKLaian 266 (297)
T COG4785 256 ATALFKLAVAN 266 (297)
T ss_pred HHHHHHHHHHH
Confidence 99999999873
No 221
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=96.71 E-value=0.0056 Score=55.38 Aligned_cols=57 Identities=16% Similarity=0.219 Sum_probs=53.2
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
..+|+.+++|++|+.++++++.+ +|.....+..+|.+|+.+|++.+|+..+++++..
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~ 58 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALEL--------DPDDPELWLQRARCLFQLGRYEEALEDLERALEL 58 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--------CcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 56889999999999999999998 6778889999999999999999999999999987
No 222
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.66 E-value=0.0034 Score=55.93 Aligned_cols=54 Identities=20% Similarity=0.166 Sum_probs=47.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
++..|++++|+.+|++++.. +|....++..+|.+|...|++++|...+++++..
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 35789999999999999988 5667788999999999999999999999998875
No 223
>cd01807 GDX_N ubiquitin-like domain of GDX. GDX contains an N-terminal ubiquitin-like domain as well as an uncharacterized c-terminal domain. The function of GDX is unknown.
Probab=96.64 E-value=0.0044 Score=56.81 Aligned_cols=73 Identities=19% Similarity=0.231 Sum_probs=64.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
+.|+|++++|..+.+.+.++++|.+|++.|..... +.-....|.++| +.|+|...|+++ ||++ +++|.|+..
T Consensus 1 m~i~vk~~~G~~~~l~v~~~~tV~~lK~~i~~~~g-i~~~~q~L~~~G-----~~L~d~~~L~~~-~i~~-~~~l~l~~~ 72 (74)
T cd01807 1 MFLTVKLLQGRECSLQVSEKESVSTLKKLVSEHLN-VPEEQQRLLFKG-----KALADDKRLSDY-SIGP-NAKLNLVVR 72 (74)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEECC-----EECCCCCCHHHC-CCCC-CCEEEEEEc
Confidence 36899999999999999999999999999988764 556778999999 889999888887 7888 899999876
Q ss_pred C
Q 000589 164 L 164 (1403)
Q Consensus 164 ~ 164 (1403)
|
T Consensus 73 ~ 73 (74)
T cd01807 73 P 73 (74)
T ss_pred C
Confidence 5
No 224
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=96.63 E-value=0.13 Score=50.67 Aligned_cols=120 Identities=21% Similarity=0.187 Sum_probs=88.7
Q ss_pred HHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC---CH-HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEM--GKVQLAEGLLSEAYTLFSEAFSILQQVTGPM---HR-EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 998 A~~l~~l--G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~---~p-~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
+..|+.+ |.-.+..|-|++|..-+.+|+++...+.... |. --+-|+..|+..+..+|+|++++....++|..+.
T Consensus 7 a~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFN 86 (144)
T PF12968_consen 7 AMAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFN 86 (144)
T ss_dssp HHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHh
Confidence 4444444 5566778999999999999999976654332 22 2367899999999999999999999999999987
Q ss_pred HhcCCCCh----hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCC
Q 000589 1072 RCLGLDHP----DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGP 1118 (1403)
Q Consensus 1072 r~lg~d~p----~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~ 1118 (1403)
+- |.-|. .++.+.++.|..+...|+.++|+..|+.+-++....-|.
T Consensus 87 RR-GEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEMiaERKGE 136 (144)
T PF12968_consen 87 RR-GELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEMIAERKGE 136 (144)
T ss_dssp HH---TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH--S-
T ss_pred hc-cccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHcCC
Confidence 75 33232 356677889999999999999999999999987765554
No 225
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=96.63 E-value=0.15 Score=60.86 Aligned_cols=114 Identities=18% Similarity=0.273 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHH-HHHHhc
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC--CRYLAMVLYHAGDMAGAIMQQHKELI-INERCL 1074 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a--~~~LA~iy~~~G~~~eAi~~~~kAL~-i~er~l 1074 (1403)
+..++..++.++..|+|..|..++... .+.+...+...|+...+ +++||-+++++|.|.-+..+|.+|++ ...+.-
T Consensus 240 ~~~l~LKsq~eY~~gn~~kA~KlL~~s-ni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~ 318 (696)
T KOG2471|consen 240 SMALLLKSQLEYAHGNHPKAMKLLLVS-NIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLR 318 (696)
T ss_pred cHHHHHHHHHHHHhcchHHHHHHHHhc-ccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHh
Confidence 455666889999999999999888653 33333233334555444 47899999999999999999999996 332221
Q ss_pred -CC--------CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1075 -GL--------DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1075 -g~--------d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
|. ........++|.|..|...|++-.|.++|.++...+
T Consensus 319 ~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vf 365 (696)
T KOG2471|consen 319 NGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVF 365 (696)
T ss_pred ccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHH
Confidence 21 111235678999999999999999999999988754
No 226
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=96.62 E-value=0.0037 Score=55.70 Aligned_cols=55 Identities=24% Similarity=0.310 Sum_probs=47.3
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+...|+|++|+.+|++++.. +|....++..+|.+|...|++++|..++++++...
T Consensus 1 ll~~~~~~~A~~~~~~~l~~--------~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 1 LLKQGDYDEAIELLEKALQR--------NPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHHTTHHHHHHHHHHHHHHH--------TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred ChhccCHHHHHHHHHHHHHH--------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 35789999999999999976 46667778999999999999999999999988754
No 227
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.59 E-value=0.24 Score=56.77 Aligned_cols=161 Identities=17% Similarity=0.028 Sum_probs=108.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
-+.+.+..|++.+|.....+.+.- +|....+...--..++.+|+...-...+++.+..+ .++-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345566778888877777776653 46555566656667777888888888877777554 245566666
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~ 1205 (1403)
..-.++..+.+.|-|++|.+...+|+++. +....+.+.++.++...|++.++.+++.+.-...+. .
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqiN--------~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~------s 242 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQIN--------RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ------S 242 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccCC--------CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh------h
Confidence 66677778888888888888888888765 345667778888888888888888888776554431 1
Q ss_pred HHHHHH--HHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1206 RTKDSQ--NWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1206 ~t~~a~--~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....+. -..+.++ ...+.|+.|+++|.
T Consensus 243 ~mlasHNyWH~Al~~------iE~aeye~aleIyD 271 (491)
T KOG2610|consen 243 WMLASHNYWHTALFH------IEGAEYEKALEIYD 271 (491)
T ss_pred hHHHhhhhHHHHHhh------hcccchhHHHHHHH
Confidence 111111 1223333 55577777777776
No 228
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=96.53 E-value=0.34 Score=55.83 Aligned_cols=260 Identities=15% Similarity=0.091 Sum_probs=163.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVL-YHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy-~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....++|..|...|++++-..+....-..+..+. .+..+.....|-... ..-+....-+.++..+++...+-..
T Consensus 49 ~~Ilel~~ll~~~~~~~~lr~li~~~Rpf~~~v~---KakaaKlvR~Lvd~~~~~~~~~~~~i~l~~~cIeWA~~ekR-- 123 (411)
T KOG1463|consen 49 QSILELGDLLAKEGDAEELRDLITSLRPFLSSVS---KAKAAKLVRSLVDMFLKIDDGTGDQIELCTECIEWAKREKR-- 123 (411)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHhh---hHHHHHHHHHHHHHHccCCCCcchHHHHHHHHHHHHHHHhH--
Confidence 4567899999999999887777776666554432 234445555544433 3345566777888888776544210
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
.......-..|..+|+..++|.+|+.+....+.-.++. .|.+.....+..-..+|..+.+..+|...+..|.......
T Consensus 124 tFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~y~~l~Nl~KakasLTsART~Anai 201 (411)
T KOG1463|consen 124 TFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKAYHALRNLPKAKASLTSARTTANAI 201 (411)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHHHHHHhcchhHHHHHHHHHHhhccc
Confidence 01112234568899999999999999998888777665 4556666667777888889999999999988887776655
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAA 1237 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l 1237 (1403)
+-+. ...+..-..=|.++....||.-|..||=+|++-|... .++.....++..+-... ...+..++-..++
T Consensus 202 YcpP-qlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~--~~~v~A~~sLKYMlLcK------IMln~~ddv~~ll 272 (411)
T KOG1463|consen 202 YCPP-QLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSL--DDDVKALTSLKYMLLCK------IMLNLPDDVAALL 272 (411)
T ss_pred ccCH-HHHHHHHHhccceeecccccchHHHHHHHHHcccccc--CCcHHHHHHHHHHHHHH------HHhcCHHHHHHHH
Confidence 5332 2234444555777888899999999999998876542 33444444444443333 3344555544444
Q ss_pred HHHHHHHHHhhChHHHHHHHHHH------HhCChHHHHHHHHHHHH
Q 000589 1238 STQKAIDILKAHPDLIHAFQAVA------AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1238 ~~qkALei~~~~p~~~~a~~~La------~~G~~~eA~~~~ekAL~ 1277 (1403)
.-+.+++ .......++..++ ...+|+.|+..|..-+.
T Consensus 273 s~K~~l~---y~g~~i~AmkavAeA~~nRSLkdF~~AL~~yk~eL~ 315 (411)
T KOG1463|consen 273 SAKLALK---YAGRDIDAMKAVAEAFGNRSLKDFEKALADYKKELA 315 (411)
T ss_pred hhHHHHh---ccCcchHHHHHHHHHhcCCcHHHHHHHHHHhHHHHh
Confidence 4223333 1122233344444 33456666666665554
No 229
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=96.52 E-value=0.076 Score=56.28 Aligned_cols=152 Identities=16% Similarity=0.120 Sum_probs=104.4
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFIN 1129 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~n 1129 (1403)
..++=+.+.+..-..+.+.+ ..+.+-.+.||..+...|++.+|..+|++++. |. .......+..
T Consensus 66 ~~q~ldP~R~~Rea~~~~~~---------ApTvqnr~rLa~al~elGr~~EA~~hy~qals------G~-fA~d~a~lLg 129 (251)
T COG4700 66 LQQKLDPERHLREATEELAI---------APTVQNRYRLANALAELGRYHEAVPHYQQALS------GI-FAHDAAMLLG 129 (251)
T ss_pred HHHhcChhHHHHHHHHHHhh---------chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhc------cc-cCCCHHHHHH
Confidence 33344445554444444444 24556678899999999999999999999985 22 1122345778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Q 000589 1130 VAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKD 1209 (1403)
Q Consensus 1130 LA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~ 1209 (1403)
++......+++..|...+++..+.... .........+|.+|...|++..|...++.++..+. .+.
T Consensus 130 lA~Aqfa~~~~A~a~~tLe~l~e~~pa------~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~yp------g~~--- 194 (251)
T COG4700 130 LAQAQFAIQEFAAAQQTLEDLMEYNPA------FRSPDGHLLFARTLAAQGKYADAESAFEVAISYYP------GPQ--- 194 (251)
T ss_pred HHHHHHhhccHHHHHHHHHHHhhcCCc------cCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCC------CHH---
Confidence 999999999999999999988775422 12233456789999999999999999999987532 111
Q ss_pred HHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1210 SQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1210 a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
+....+.+. ..+|+..+|..-+.
T Consensus 195 ar~~Y~e~L------a~qgr~~ea~aq~~ 217 (251)
T COG4700 195 ARIYYAEML------AKQGRLREANAQYV 217 (251)
T ss_pred HHHHHHHHH------HHhcchhHHHHHHH
Confidence 122223333 67887777766554
No 230
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.50 E-value=0.041 Score=61.00 Aligned_cols=158 Identities=16% Similarity=0.178 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
....+.+..++.-.+.|.-..+++.+.++.. .+.-......||.+.++.|+.+.|..+++..-.......+.
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~-------~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~- 248 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYY-------PEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGL- 248 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhC-------CcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhcc-
Confidence 5566777888888899999999999888742 23444567789999999999999999999776554443222
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
........+.+.+|...++|.+|...|.+.+.. ++..+.+.++-|.|+...|+..+|++.++.++.+.
T Consensus 249 -q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~--------D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 249 -QGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRM--------DPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred -chhHHHHhhhhhheecccchHHHHHHHhhcccc--------CCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 234567889999999999999999999888753 45567778999999999999999999999988765
Q ss_pred hCCCcHHHHHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
+.+...-...++|..+|.
T Consensus 317 --P~~~l~es~~~nL~tmyE 334 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMYE 334 (366)
T ss_pred --CccchhhhHHHHHHHHHH
Confidence 233333345556665543
No 231
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.45 E-value=0.03 Score=62.27 Aligned_cols=101 Identities=19% Similarity=0.259 Sum_probs=83.6
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-----cHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE-----HIQTAVC 1168 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~-----~~~~a~~ 1168 (1403)
....+++|++.|.-|+..... .+.++...+.++..+|++|..+|+-+....++++|++.+.+.+... ......+
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345788899988888866543 3556678899999999999999999999999999999888775433 3455778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
++.+|.++...|++++|..++.+.+..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 999999999999999999999988763
No 232
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=96.40 E-value=0.035 Score=61.77 Aligned_cols=101 Identities=22% Similarity=0.125 Sum_probs=83.9
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC-----ChhHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD-----HPDTAHS 1084 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d-----~p~~~~a 1084 (1403)
....+++|++.|.-|+-..+- .+..+...+.++..+|++|..+|+.+....++++|+..+++.+-.. ..+....
T Consensus 89 ~~Rt~~~ai~~YkLAll~~~~-~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l 167 (214)
T PF09986_consen 89 GERTLEEAIESYKLALLCAQI-KKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL 167 (214)
T ss_pred CCCCHHHHHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence 345688999999988877543 4556668899999999999999999999999999999988876332 2245678
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
++.+|.++.+.|++++|..+|.+++..
T Consensus 168 ~YLigeL~rrlg~~~eA~~~fs~vi~~ 194 (214)
T PF09986_consen 168 LYLIGELNRRLGNYDEAKRWFSRVIGS 194 (214)
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHcC
Confidence 889999999999999999999999864
No 233
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=96.39 E-value=1.6 Score=51.47 Aligned_cols=268 Identities=15% Similarity=0.033 Sum_probs=160.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVA-NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a-~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+.-++..+..|+|+.|..-|+-.+. +|++- --+..|-.--..+|..+.|+.|.+.|....
T Consensus 122 IhlLeAQaal~eG~~~~Ar~kfeAMl~---------dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-------- 184 (531)
T COG3898 122 IHLLEAQAALLEGDYEDARKKFEAMLD---------DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-------- 184 (531)
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHhc---------ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------
Confidence 334457778889999999998887654 34431 112222223356899999999999987763
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHH--HHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAAT--FINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~--~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
|...++...+-...+..|+|+.|+++........ +.+.+-.+...+ +.--+.-+ -.-+...|...-.+++++.
T Consensus 185 p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~--vie~~~aeR~rAvLLtAkA~s~-ldadp~~Ar~~A~~a~KL~-- 259 (531)
T COG3898 185 PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK--VIEKDVAERSRAVLLTAKAMSL-LDADPASARDDALEANKLA-- 259 (531)
T ss_pred cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--hhchhhHHHHHHHHHHHHHHHH-hcCChHHHHHHHHHHhhcC--
Confidence 4445555555555678999999999998876542 223332222222 22222222 2345778888888888765
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
++..-.-..-+..|+..|+..++-..++.+.+. .-||.....|... ..|+ .++.-
T Consensus 260 ------pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~------ePHP~ia~lY~~a-----------r~gd--ta~dR 314 (531)
T COG3898 260 ------PDLVPAAVVAARALFRDGNLRKGSKILETAWKA------EPHPDIALLYVRA-----------RSGD--TALDR 314 (531)
T ss_pred ------CccchHHHHHHHHHHhccchhhhhhHHHHHHhc------CCChHHHHHHHHh-----------cCCC--cHHHH
Confidence 444455566788999999999999999888764 4588876554332 2232 23333
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH----HhCChHHHHHHHHHHHHHhhcCCCCccccchHHHHHHHHHHHHHHHHHhhHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA----AAGGSGNSGASANNSLNAALLGETLPRGRGFDERAARAAAEVRKKAVAKGLL 1312 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La----~~G~~~eA~~~~ekAL~~~~~G~~~p~~~~~~era~~a~~e~r~l~~a~G~~ 1312 (1403)
++ ++-.+....|+...+....+ ..|++..|..-.+.+.+.. |+... .+.++. .-
T Consensus 315 lk--Ra~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~------pres~-------------~lLlAd-Ie 372 (531)
T COG3898 315 LK--RAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAREA------PRESA-------------YLLLAD-IE 372 (531)
T ss_pred HH--HHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhhC------chhhH-------------HHHHHH-HH
Confidence 33 33233333344444444443 6678887777666665522 11111 112222 12
Q ss_pred HhhCCCchhhhHHHHHHHHHHhcC
Q 000589 1313 IRPHGLPAQALPPLTQLLNIINSS 1336 (1403)
Q Consensus 1313 ~~~~g~~~eA~~~l~qaL~i~~s~ 1336 (1403)
....|+..+....+-|++.--+-+
T Consensus 373 eAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 373 EAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred hhccCchHHHHHHHHHHhcCCCCC
Confidence 234488888888888888776644
No 234
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=96.39 E-value=0.085 Score=65.83 Aligned_cols=140 Identities=15% Similarity=0.017 Sum_probs=105.8
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
....+.|.+++...... .|+-+-.+...|.++...|+.++|++.+++++...... ..-...+++.+|+
T Consensus 246 ~~~~~~a~~lL~~~~~~--------yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~----~Ql~~l~~~El~w 313 (468)
T PF10300_consen 246 DVPLEEAEELLEEMLKR--------YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEW----KQLHHLCYFELAW 313 (468)
T ss_pred CCCHHHHHHHHHHHHHh--------CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhH----HhHHHHHHHHHHH
Confidence 34566777777776665 45667778899999999999999999999998533221 1223457899999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH-------HHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM-------DTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~-------deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
++..+.+|++|..++.+..+. ..-..+...+..|.++...++. ++|..+|.++-.+..+..|...|
T Consensus 314 ~~~~~~~w~~A~~~f~~L~~~-------s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp 386 (468)
T PF10300_consen 314 CHMFQHDWEEAAEYFLRLLKE-------SKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLP 386 (468)
T ss_pred HHHHHchHHHHHHHHHHHHhc-------cccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCC
Confidence 999999999999999998863 1234566677889999999999 88888888888887776665555
Q ss_pred HHHHHH
Q 000589 1164 QTAVCY 1169 (1403)
Q Consensus 1164 ~~a~~~ 1169 (1403)
....+.
T Consensus 387 ~E~Fv~ 392 (468)
T PF10300_consen 387 LEKFVI 392 (468)
T ss_pred hHHHHH
Confidence 443333
No 235
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=96.38 E-value=1.1 Score=53.33 Aligned_cols=179 Identities=15% Similarity=0.102 Sum_probs=102.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH-HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHRE-VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH 1078 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~-~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~ 1078 (1403)
..+..+...+..++++++..++.++.............. ...+|..|..+ ..+.+.+++..+.......
T Consensus 31 ~~~~~al~~l~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~l-q~L~Elee~~~~~~~~~~~--------- 100 (352)
T PF02259_consen 31 YSFYRALLALRQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKL-QQLVELEEIIELKSNLSQN--------- 100 (352)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH-hHHHHHHHHHHHHHhhccc---------
Confidence 334455556688999999999999988765443332222 23333333322 2334445555544222110
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG--PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g--~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
+...... +-..-.+......-....+..+.+...++. ......+.++..++.+....|+++.|..++.++......
T Consensus 101 ~~~~~~l--~~~W~~Rl~~~~~~~~~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~ 178 (352)
T PF02259_consen 101 PQDLKSL--LKRWRSRLPNMQDDFSVWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS 178 (352)
T ss_pred HHHHHHH--HHHHHHHHHHhccchHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc
Confidence 0000000 001111111112223333444443333332 123567888999999999999999999999987764311
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
.......+.+..+.++...|+..+|+..++..+.
T Consensus 179 ----~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 179 ----SESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred ----ccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1112455677889999999999999999998887
No 236
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=96.38 E-value=0.011 Score=67.23 Aligned_cols=96 Identities=15% Similarity=0.069 Sum_probs=84.5
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
+-..|.-|+.+|.|++|+++|.+++.+. |.....+.|.|..|+.+.+|..|+.-+..|+.+- ..
T Consensus 100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~--------P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd--------~~ 163 (536)
T KOG4648|consen 100 IKERGNTYFKQGKYEEAIDCYSTAIAVY--------PHNPVYHINRALAYLKQKSFAQAEEDCEAAIALD--------KL 163 (536)
T ss_pred HHHhhhhhhhccchhHHHHHhhhhhccC--------CCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhh--------HH
Confidence 3456889999999999999999999873 5556678899999999999999999999999873 45
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+|...|..-..+|...+|.+-++.+|++-
T Consensus 164 Y~KAYSRR~~AR~~Lg~~~EAKkD~E~vL~LE 195 (536)
T KOG4648|consen 164 YVKAYSRRMQARESLGNNMEAKKDCETVLALE 195 (536)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHhhC
Confidence 67889999999999999999999999999874
No 237
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=96.35 E-value=1.5 Score=50.91 Aligned_cols=141 Identities=13% Similarity=-0.009 Sum_probs=94.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHhh--cCCCCH----H
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN-QTELALRHMSRALLLLSLS--SGPDHP----D 1122 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G-~~~eAl~~l~rAL~l~~~~--~g~d~p----~ 1122 (1403)
...+|+++.|..++.|+-.+........-...+..++++|.-....+ +++.|..++++|.+++... ....++ .
T Consensus 3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 35789999999999999877542111112346788999999999999 9999999999999997551 112222 3
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
...++..|+.+|...+.++...+ ..++++..+.-+|. ++.... ..+ .++...++.+++.+.+.+++.-
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~k-a~~~l~~l~~e~~~-~~~~~~--L~l-~il~~~~~~~~~~~~L~~mi~~ 150 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEK-ALNALRLLESEYGN-KPEVFL--LKL-EILLKSFDEEEYEEILMRMIRS 150 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHH-HHHHHHHHHHhCCC-CcHHHH--HHH-HHHhccCChhHHHHHHHHHHHh
Confidence 56788899999999998865544 34455555444443 333221 122 2222278888888888777653
No 238
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.15 Score=56.74 Aligned_cols=157 Identities=11% Similarity=0.071 Sum_probs=120.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
....+.++.++.-+++|.-.+..+.+.+.. +.+........||.+..+.|+.+.|..+++++-.......+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~-------~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~-- 247 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKY-------YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDG-- 247 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHh-------CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhc--
Confidence 456777888999999999999999998874 23444555677899999999999999999987655444322
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
-........+.+.+|...++|.+|...|.+++..- +..+.+.++-|.|+...|+...|++.++.+..+.
T Consensus 248 ~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D--------~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~--- 316 (366)
T KOG2796|consen 248 LQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMD--------PRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD--- 316 (366)
T ss_pred cchhHHHHhhhhhheecccchHHHHHHHhhccccC--------CCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC---
Confidence 23345567889999999999999999999887642 4566778889999999999999999999887753
Q ss_pred hCCCCHHHHHHHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~ 1218 (1403)
|.+..+-....+|..+|
T Consensus 317 --P~~~l~es~~~nL~tmy 333 (366)
T KOG2796|consen 317 --PRHYLHESVLFNLTTMY 333 (366)
T ss_pred --CccchhhhHHHHHHHHH
Confidence 33444445556666655
No 239
>cd01794 DC_UbP_C dendritic cell derived ubiquitin-like protein. DC_UbP (dendritic cell derived ubiquitin-like protein) is a ubiquitin-like protein from human dendritic cells that is expressed in the mitochondrion. The ubiquitin-like domain of this protein is found at the C-terminus and lacks the canonical gly-gly motif of ubiquitin required for ubiquitinization. DC_UbP is expressed in tumor cells but not in normal human adult tissue suggesting a role for DC_UbP in tumorogenesis.
Probab=96.25 E-value=0.0092 Score=54.16 Aligned_cols=68 Identities=16% Similarity=0.298 Sum_probs=59.8
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|++++|..+.+.+.++++|.||++.+.... .+.-....|.+.| ..|+|...|.+ -||+. +++|.|+
T Consensus 1 ~~vk~~~G~~~~l~v~~~~TV~~lK~~I~~~~-gi~~~~q~Li~~G-----~~L~D~~~l~~-~~i~~-~~tv~~~ 68 (70)
T cd01794 1 LKVRLSTGKDVKLSVSSKDTVGQLKKQLQAAE-GVDPCCQRWFFSG-----KLLTDKTRLQE-TKIQK-DYVVQVI 68 (70)
T ss_pred CeEEcCCCCEEEEEECCcChHHHHHHHHHHHh-CCCHHHeEEEECC-----eECCCCCCHHH-cCCCC-CCEEEEE
Confidence 36899999999999999999999999998775 4677888999999 88999999988 57886 9999886
No 240
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.02 Score=62.87 Aligned_cols=101 Identities=21% Similarity=0.170 Sum_probs=89.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.-+..-|..|+.-.+|..|+..|-+||.+ +|..+..|.|-|.+|+...+++.+..-.++|+++ .
T Consensus 11 ~qlkE~gnk~f~~k~y~~ai~~y~raI~~--------nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--------~ 74 (284)
T KOG4642|consen 11 EQLKEQGNKCFIPKRYDDAIDCYSRAICI--------NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--------D 74 (284)
T ss_pred HHHHhccccccchhhhchHHHHHHHHHhc--------CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--------C
Confidence 33455567788888999999999999987 5888889999999999999999999999999987 5
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
|+.+...+.||..+.....|++|+..+++|..+....
T Consensus 75 ~N~vk~h~flg~~~l~s~~~~eaI~~Lqra~sl~r~~ 111 (284)
T KOG4642|consen 75 PNLVKAHYFLGQWLLQSKGYDEAIKVLQRAYSLLREQ 111 (284)
T ss_pred hHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcC
Confidence 8889999999999999999999999999998887553
No 241
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.22 E-value=0.72 Score=55.27 Aligned_cols=162 Identities=13% Similarity=0.047 Sum_probs=98.9
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
...+..|...+.+++...++..+...-.......+|=..|....+|+.-+.+.+..-.+ ...+-+........+|.
T Consensus 112 re~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~----p~~~~~~~~~i~~~yaf 187 (374)
T PF13281_consen 112 RERYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEAL----PTCDVANQHNIKFQYAF 187 (374)
T ss_pred HHHHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhcc----CccchhcchHHHHHHHH
Confidence 44555566666677776666555322333455667777788889998888877654433 11122334455667888
Q ss_pred HHHH---CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHHHHHHh
Q 000589 1091 FYHG---LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI---------GKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1091 ~~~~---~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~---------g~~deAl~~lekAL~l~~~~~ 1158 (1403)
++.+ .|+.++|+..+..++.- .......++..+|.+|-.+ ..+++|+.+|.++.++..
T Consensus 188 ALnRrn~~gdre~Al~il~~~l~~-------~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~--- 257 (374)
T PF13281_consen 188 ALNRRNKPGDREKALQILLPVLES-------DENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEP--- 257 (374)
T ss_pred HHhhcccCCCHHHHHHHHHHHHhc-------cCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCc---
Confidence 8888 99999999999887643 2233445677788877643 235666666666665431
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....-.|++.++...|...+...-+++.
T Consensus 258 ------~~Y~GIN~AtLL~~~g~~~~~~~el~~i 285 (374)
T PF13281_consen 258 ------DYYSGINAATLLMLAGHDFETSEELRKI 285 (374)
T ss_pred ------cccchHHHHHHHHHcCCcccchHHHHHH
Confidence 1223346777777777644444333333
No 242
>cd01798 parkin_N amino-terminal ubiquitin-like of parkin protein. parkin_N parkin protein is a RING-type E3 ubiquitin ligase with an amino-terminal ubiquitin-like (Ubl) domain and an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain. Naturally occurring mutations in parkin are thought to cause the disease AR_JP (autosomal-recessive juvenile parkinsonism). Parkin binds the Rpn10 subunit of 26S proteasomes through its Ubl domain.
Probab=96.22 E-value=0.0095 Score=53.97 Aligned_cols=69 Identities=14% Similarity=0.293 Sum_probs=61.7
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
|.|+++.|..+.+.+.+.++|.+|++.|..... +.-+...|.++| ..|+|...|++ -|+++ +++|.||.
T Consensus 1 i~vk~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-i~~~~q~Li~~G-----~~L~d~~~l~~-~~i~~-~stl~l~~ 69 (70)
T cd01798 1 VYVRTNTGHTFPVEVDPDTDIKQLKEVVAKRQG-VPPDQLRVIFAG-----KELRNTTTIQE-CDLGQ-QSILHAVR 69 (70)
T ss_pred CEEEcCCCCEEEEEECCCChHHHHHHHHHHHHC-CCHHHeEEEECC-----eECCCCCcHHH-cCCCC-CCEEEEEe
Confidence 578999999999999999999999999988764 677889999999 88999999988 48988 99999884
No 243
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.22 E-value=0.11 Score=53.99 Aligned_cols=112 Identities=22% Similarity=0.159 Sum_probs=83.2
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC--C------------HHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD--H------------PDVAATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d--~------------p~~a~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.+...|......++...++..+++++.++.--+-++ . .....++..++..+...|++++|+.++++
T Consensus 8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 87 (146)
T PF03704_consen 8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR 87 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 344456666778889999999999998876433221 1 12345667788889999999999999999
Q ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1150 ALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1150 AL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
++.+. |..-.++..+-.+|...|+..+|+.+|++....+.+.+|..
T Consensus 88 ~l~~d--------P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 88 ALALD--------PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHS--------TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHhcC--------CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99864 66677899999999999999999999999999999888864
No 244
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.06 E-value=0.76 Score=52.91 Aligned_cols=165 Identities=11% Similarity=0.018 Sum_probs=126.2
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAH 1083 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~ 1083 (1403)
-+-+.+..|++.+|.....+.++- +|.-.-+..---.+++.+|+...-...+++.+-.. ..|-|-...
T Consensus 109 ~aai~~~~g~~h~a~~~wdklL~d--------~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~w----n~dlp~~sY 176 (491)
T KOG2610|consen 109 KAAILWGRGKHHEAAIEWDKLLDD--------YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKW----NADLPCYSY 176 (491)
T ss_pred hHHHhhccccccHHHHHHHHHHHh--------CchhhhhhhhhhhHHHhccchhhhhhHHHHhcccc----CCCCcHHHH
Confidence 345666788888888888887765 45444555555567888899888888887776542 356676677
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
....++..+...|-|++|++..++|+++ ++....+...++.++...|++.++.++..+.-..... ...
T Consensus 177 v~GmyaFgL~E~g~y~dAEk~A~ralqi--------N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~----s~m 244 (491)
T KOG2610|consen 177 VHGMYAFGLEECGIYDDAEKQADRALQI--------NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQ----SWM 244 (491)
T ss_pred HHHHHHhhHHHhccchhHHHHHHhhccC--------CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhh----hhH
Confidence 7778899999999999999999999976 4566788889999999999999999998887665432 123
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
....-|..-|.++..-+.|+.|++.|..-
T Consensus 245 lasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 245 LASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 33445666788888889999999998764
No 245
>cd01810 ISG15_repeat2 ISG15 ubiquitin-like protein, second repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains and becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=96.03 E-value=0.015 Score=53.39 Aligned_cols=70 Identities=16% Similarity=0.240 Sum_probs=61.8
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
|.|+++.+..+.|.+.++++|.+|++.|..... +.-..+.|.++| ..|+|...|++. |+++ +.+|.|+..
T Consensus 1 i~vk~~~g~~~~l~v~~~~tV~~lK~~I~~~~g-i~~~~q~L~~~G-----~~L~D~~tL~~~-~i~~-~~tl~l~~~ 70 (74)
T cd01810 1 ILVRNDKGRSSIYEVQLTQTVATLKQQVSQRER-VQADQFWLSFEG-----RPMEDEHPLGEY-GLKP-GCTVFMNLR 70 (74)
T ss_pred CEEECCCCCEEEEEECCcChHHHHHHHHHHHhC-CCHHHeEEEECC-----EECCCCCCHHHc-CCCC-CCEEEEEEE
Confidence 579999999999999999999999999987764 677889999999 889999999885 8988 888988754
No 246
>PTZ00044 ubiquitin; Provisional
Probab=96.01 E-value=0.016 Score=53.28 Aligned_cols=71 Identities=18% Similarity=0.334 Sum_probs=62.3
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
.|.|++++|..+.+.+.+.++|.+|++.|..... +.-.+..|.++| ..|+|...|++. ++.+ +++|.|+..
T Consensus 2 ~i~vk~~~G~~~~l~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~L~d~~~l~~~-~i~~-~~~i~l~~~ 72 (76)
T PTZ00044 2 QILIKTLTGKKQSFNFEPDNTVQQVKMALQEKEG-IDVKQIRLIYSG-----KQMSDDLKLSDY-KVVP-GSTIHMVLQ 72 (76)
T ss_pred EEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-CCHHHeEEEECC-----EEccCCCcHHHc-CCCC-CCEEEEEEE
Confidence 6899999999999999999999999999999875 567889999998 789999888877 6777 889988754
No 247
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.99 E-value=0.13 Score=53.42 Aligned_cols=113 Identities=22% Similarity=0.211 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC--------------CHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM--------------HREVANCCRYLAMVLYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~--------------~p~~a~a~~~LA~iy~~~G~~~eAi~~~~ 1064 (1403)
..+...|......++...++..+.+++.++..-+-++ ......++..++..+...|++++|+.+++
T Consensus 7 ~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 86 (146)
T PF03704_consen 7 EALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQ 86 (146)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHH
Confidence 3444556677778899999999999998875432211 12234567778888999999999999999
Q ss_pred HHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1065 KELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1065 kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+++.+ +|..-.++..+-.+|...|++..|+..|++....+..-+|..
T Consensus 87 ~~l~~--------dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~ 133 (146)
T PF03704_consen 87 RALAL--------DPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIE 133 (146)
T ss_dssp HHHHH--------STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS--
T ss_pred HHHhc--------CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcC
Confidence 99998 577778899999999999999999999999998888766653
No 248
>cd01804 midnolin_N Ubiquitin-like domain of midnolin. midnolin_N Midnolin (midbrain nucleolar protein) is expressed in the nucleolus and is thought to regulate genes involved in neurogenesis. Midnolin contains an amino-terminal ubiquitin-like domain.
Probab=95.99 E-value=0.017 Score=53.54 Aligned_cols=72 Identities=11% Similarity=0.291 Sum_probs=62.0
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+...|.++++.+.++++|.||++.+.... .+.-....|.+.| ..|+|. .|++. |+++ +++|.|+..
T Consensus 2 m~I~Vk~~~G~~~~l~v~~~~TV~~LK~~I~~~~-~~~~~~qrL~~~G-----k~L~d~-~L~~~-gi~~-~~~i~l~~~ 72 (78)
T cd01804 2 MNLNIHSTTGTRFDLSVPPDETVEGLKKRISQRL-KVPKERLALLHRE-----TRLSSG-KLQDL-GLGD-GSKLTLVPT 72 (78)
T ss_pred eEEEEEECCCCEEEEEECCcCHHHHHHHHHHHHh-CCChHHEEEEECC-----cCCCCC-cHHHc-CCCC-CCEEEEEee
Confidence 5799999999999999999999999999998876 4677778888888 779887 78876 8998 899999865
Q ss_pred C
Q 000589 164 L 164 (1403)
Q Consensus 164 ~ 164 (1403)
.
T Consensus 73 ~ 73 (78)
T cd01804 73 V 73 (78)
T ss_pred c
Confidence 3
No 249
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.95 E-value=0.4 Score=53.49 Aligned_cols=211 Identities=11% Similarity=0.047 Sum_probs=139.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
..+.++|+.-|++++++- |.....-..++-.+-.+++.+++|++-++.|.+.+.........+..+ .+.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySE--KsIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSE--KSINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccH--HHHHHHHH
Confidence 347899999999999873 333333456788888999999999999999999998876554333322 22233333
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH----HHH
Q 000589 1091 FYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI----QTA 1166 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~----~~a 1166 (1403)
+-....+.+--..+|+..+...+.. .+......+-..||.+|+..++|..-...+++.-.-++.-.|.+.. +..
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdA--KNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDA--KNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhh--hcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 3334445555556666666555443 2233445566789999999999998888888877777665565532 344
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1167 VCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDS-QNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1167 ~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a-~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+|..--..|..+++-..-...|++++.+-... .||...-. ..+-|.++ ...|++++|..-+-
T Consensus 192 EiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAI---PHPlImGvIRECGGKMH------lreg~fe~AhTDFF 255 (440)
T KOG1464|consen 192 EIYALEIQMYTEQKNNKKLKALYEQALHIKSAI---PHPLIMGVIRECGGKMH------LREGEFEKAHTDFF 255 (440)
T ss_pred hhHhhHhhhhhhhcccHHHHHHHHHHHHhhccC---CchHHHhHHHHcCCccc------cccchHHHHHhHHH
Confidence 555555677888888888888999999875543 36655432 33334444 55667776665554
No 250
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.88 E-value=0.64 Score=52.31 Aligned_cols=166 Identities=15% Similarity=0.127 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+...|.+|+..|++++|+........+ .+...--.++.++.+++-|....++...+.+.
T Consensus 110 ~~l~aa~i~~~~~~~deAl~~~~~~~~l-------------E~~Al~VqI~lk~~r~d~A~~~lk~mq~ided------- 169 (299)
T KOG3081|consen 110 DLLLAAIIYMHDGDFDEALKALHLGENL-------------EAAALNVQILLKMHRFDLAEKELKKMQQIDED------- 169 (299)
T ss_pred HHHHhhHHhhcCCChHHHHHHHhccchH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHccchH-------
Confidence 3445688999999999999988774333 23334456777888889999888888877432
Q ss_pred hHHHHHHHHHHHHH----HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYH----GLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~----~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.++..||..+. ..+.+..|.-+|+..- +. .+.+..+++.+|.++..+++|++|...++.||...
T Consensus 170 ---~tLtQLA~awv~la~ggek~qdAfyifeE~s-------~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd- 237 (299)
T KOG3081|consen 170 ---ATLTQLAQAWVKLATGGEKIQDAFYIFEELS-------EK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKD- 237 (299)
T ss_pred ---HHHHHHHHHHHHHhccchhhhhHHHHHHHHh-------cc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhcc-
Confidence 12333444333 2334555555555433 22 23456678999999999999999999999999743
Q ss_pred HHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH
Q 000589 1156 RLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK 1208 (1403)
Q Consensus 1156 ~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~ 1208 (1403)
+.....+.|+-.+-...|.-.++..-+-.-+. ...+.|+.+.
T Consensus 238 -------~~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk----~~~p~h~~vk 279 (299)
T KOG3081|consen 238 -------AKDPETLANLIVLALHLGKDAEVTERNLSQLK----LSHPEHPFVK 279 (299)
T ss_pred -------CCCHHHHHHHHHHHHHhCCChHHHHHHHHHHH----hcCCcchHHH
Confidence 34466788888888888888777654433222 2345565544
No 251
>cd01806 Nedd8 Nebb8-like ubiquitin protein. Nedd8 (also known as Rub1) has a single conserved ubiquitin-like domain that is part of a protein modification pathway similar to that of ubiquitin. Nedd8 modifies a family of molecular scaffold proteins called cullins that are responsible for assembling the ROC1/Rbx1 RING-based E3 ubiquitin ligases, of which several play a direct role in tumorigenesis.
Probab=95.85 E-value=0.022 Score=52.25 Aligned_cols=72 Identities=19% Similarity=0.311 Sum_probs=62.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+.++|..+++.+.+.++|.+|++.|.... .+.-....|.++| ..|+|...|+++ ++++ +++|.|+..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tv~~lK~~i~~~~-g~~~~~qrL~~~g-----~~L~d~~tl~~~-~i~~-g~~i~l~~~ 72 (76)
T cd01806 1 MLIKVKTLTGKEIEIDIEPTDKVERIKERVEEKE-GIPPQQQRLIYSG-----KQMNDDKTAADY-KLEG-GSVLHLVLA 72 (76)
T ss_pred CEEEEEeCCCCEEEEEECCCCCHHHHHHHHhHhh-CCChhhEEEEECC-----eEccCCCCHHHc-CCCC-CCEEEEEEE
Confidence 4789999999999999999999999999998876 4667778899888 788888888876 6888 899988764
No 252
>PF00240 ubiquitin: Ubiquitin family; InterPro: IPR000626 Ubiquitinylation is an ATP-dependent process that involves the action of at least three enzymes: a ubiquitin-activating enzyme (E1, IPR000011 from INTERPRO), a ubiquitin-conjugating enzyme (E2, IPR000608 from INTERPRO), and a ubiquitin ligase (E3, IPR000569 from INTERPRO, IPR003613 from INTERPRO), which work sequentially in a cascade. There are many different E3 ligases, which are responsible for the type of ubiquitin chain formed, the specificity of the target protein, and the regulation of the ubiquitinylation process []. Ubiquitinylation is an important regulatory tool that controls the concentration of key signalling proteins, such as those involved in cell cycle control, as well as removing misfolded, damaged or mutant proteins that could be harmful to the cell. Several ubiquitin-like molecules have been discovered, such as Ufm1 (IPR005375 from INTERPRO), SUMO1 (IPR003653 from INTERPRO), NEDD8, Rad23 (IPR004806 from INTERPRO), Elongin B and Parkin (IPR003977 from INTERPRO), the latter being involved in Parkinson's disease []. Ubiquitin is a protein of 76 amino acid residues, found in all eukaryotic cells and whose sequence is extremely well conserved from protozoan to vertebrates. Ubiquitin acts through its post-translational attachment (ubiquitinylation) to other proteins, where these modifications alter the function, location or trafficking of the protein, or targets it for destruction by the 26S proteasome []. The terminal glycine in the C-terminal 4-residue tail of ubiquitin can form an isopeptide bond with a lysine residue in the target protein, or with a lysine in another ubiquitin molecule to form a ubiquitin chain that attaches itself to a target protein. Ubiquitin has seven lysine residues, any one of which can be used to link ubiquitin molecules together, resulting in different structures that alter the target protein in different ways. It appears that Lys(11)-, Lys(29) and Lys(48)-linked poly-ubiquitin chains target the protein to the proteasome for degradation, while mono-ubiquitinylated and Lys(6)- or Lys(63)-linked poly-ubiquitin chains signal reversible modifications in protein activity, location or trafficking []. For example, Lys(63)-linked poly-ubiquitinylation is known to be involved in DNA damage tolerance, inflammatory response, protein trafficking and signal transduction through kinase activation []. In addition, the length of the ubiquitin chain alters the fate of the target protein. Regulatory proteins such as transcription factors and histones are frequent targets of ubquitinylation [].; GO: 0005515 protein binding; PDB: 2DZI_A 2XEW_E 3NOB_E 2KWU_B 2Y5B_F 3PHD_G 2KWV_B 2KOX_A 2XK5_B 3NHE_B ....
Probab=95.79 E-value=0.018 Score=51.77 Aligned_cols=68 Identities=25% Similarity=0.391 Sum_probs=60.0
Q ss_pred eCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecC
Q 000589 89 KTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAAL 164 (1403)
Q Consensus 89 ~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~ 164 (1403)
++++|..+++.+.++++|.+|++.|..... .......|.|+| ..|+|...|+++ |+++ +++|.|+-.|
T Consensus 1 k~~~g~~~~~~v~~~~tV~~lK~~i~~~~~-~~~~~~~L~~~G-----~~L~d~~tL~~~-~i~~-~~~I~l~~k~ 68 (69)
T PF00240_consen 1 KTLSGKTFTLEVDPDDTVADLKQKIAEETG-IPPEQQRLIYNG-----KELDDDKTLSDY-GIKD-GSTIHLVIKP 68 (69)
T ss_dssp EETTSEEEEEEEETTSBHHHHHHHHHHHHT-STGGGEEEEETT-----EEESTTSBTGGG-TTST-TEEEEEEESS
T ss_pred CCCCCcEEEEEECCCCCHHHhhhhcccccc-cccccceeeeee-----ecccCcCcHHHc-CCCC-CCEEEEEEec
Confidence 457788999999999999999999999876 667888999999 889999999999 8998 8899998765
No 253
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.79 E-value=0.19 Score=54.29 Aligned_cols=111 Identities=16% Similarity=0.101 Sum_probs=86.7
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
.+...++..+|..|...|++++|++.|.++.... .........+.++-.+....+++.....++.+|-.+...
T Consensus 33 esir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~-- 105 (177)
T PF10602_consen 33 ESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEK-- 105 (177)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhc--
Confidence 4667889999999999999999999999988753 223557788889999999999999999999999988765
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
|.+..........-|..+...++|..|.+.|-.+...+
T Consensus 106 ~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 106 GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 22222333344455667777899999999888776543
No 254
>cd01802 AN1_N ubiquitin-like domain of AN1. AN1 (also known as ANUBL1 and RSD-7) is ubiquitin-like protein with a testis-specific expression in rats that has an N-terminal ubiquitin-like domain and a C-terminal zinc-binding domain. Unlike ubiquitin polyproteins and most ubiquitin fusion proteins, the N-terminal ubiquitin-like domain of An1 does not undergo proteolytic processing. The function of AN1 is unknown.
Probab=95.77 E-value=0.023 Score=55.63 Aligned_cols=73 Identities=22% Similarity=0.366 Sum_probs=64.2
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
.++|.|++.+|..+.|.+.+.++|.+|++.|..... ..-....|.+.| ..|+|-..|+++ +|++ +++|.|+.
T Consensus 27 ~M~I~Vk~l~G~~~~leV~~~~TV~~lK~kI~~~~g-ip~~~QrLi~~G-----k~L~D~~tL~dy-~I~~-~stL~l~~ 98 (103)
T cd01802 27 TMELFIETLTGTCFELRVSPFETVISVKAKIQRLEG-IPVAQQHLIWNN-----MELEDEYCLNDY-NISE-GCTLKLVL 98 (103)
T ss_pred CEEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHHhC-CChHHEEEEECC-----EECCCCCcHHHc-CCCC-CCEEEEEE
Confidence 589999999999999999999999999999998764 567789999999 889999999887 6888 88999875
Q ss_pred c
Q 000589 163 A 163 (1403)
Q Consensus 163 ~ 163 (1403)
.
T Consensus 99 ~ 99 (103)
T cd01802 99 A 99 (103)
T ss_pred e
Confidence 3
No 255
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.76 E-value=1.7 Score=54.07 Aligned_cols=128 Identities=13% Similarity=-0.005 Sum_probs=72.8
Q ss_pred CCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000589 1034 PMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1034 ~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~ 1113 (1403)
.++...-.+.+++|..+..+-.+++|.+||.+.-.. -++..+|+...+|++-+.+.+.
T Consensus 790 ~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------------e~~~ecly~le~f~~LE~la~~------ 847 (1189)
T KOG2041|consen 790 DDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------------ENQIECLYRLELFGELEVLART------ 847 (1189)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------------HhHHHHHHHHHhhhhHHHHHHh------
Confidence 345566778888888888888888888888764221 2345555555555543333221
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHH-------------------HHHHHHHHHhCCCcHHHHHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQ-------------------EALKKNERLLGEEHIQTAVCYHALAI 1174 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~le-------------------kAL~l~~~~~G~~~~~~a~~~~~LA~ 1174 (1403)
+.++++ .+-.+|.++...|-.++|.+.|. +|+++.++. .-++........+.
T Consensus 848 --Lpe~s~----llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~avelaq~~---~l~qv~tliak~aa 918 (1189)
T KOG2041|consen 848 --LPEDSE----LLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGEAVELAQRF---QLPQVQTLIAKQAA 918 (1189)
T ss_pred --cCcccc----hHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHhc---cchhHHHHHHHHHH
Confidence 223333 23345555555555555555442 333333322 22344444445555
Q ss_pred HHHHcCCHHHHHHHHHHH
Q 000589 1175 AFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1175 ~y~~~Gd~~eAi~~lkkA 1192 (1403)
-+...++.-+|++.+++|
T Consensus 919 qll~~~~~~eaIe~~Rka 936 (1189)
T KOG2041|consen 919 QLLADANHMEAIEKDRKA 936 (1189)
T ss_pred HHHhhcchHHHHHHhhhc
Confidence 666778888888888877
No 256
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=95.67 E-value=0.61 Score=52.11 Aligned_cols=209 Identities=11% Similarity=0.074 Sum_probs=134.7
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1053 AGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1053 ~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
..+.++|+.-|++++++- |.....-..++-.+-.+++++++|++-+..|.+.+...+.....++... +.+++-.
T Consensus 40 e~~p~~Al~sF~kVlelE----gEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEK--sIN~IlD 113 (440)
T KOG1464|consen 40 EDEPKEALSSFQKVLELE----GEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEK--SINSILD 113 (440)
T ss_pred ccCHHHHHHHHHHHHhcc----cccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHH--HHHHHHH
Confidence 357899999999999873 3333445677888899999999999999999999977766544433321 1222222
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH----
Q 000589 1133 MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK---- 1208 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~---- 1208 (1403)
.-....+.+--..+|+..|+..+..- +.......-..||.+|...++|.+-...+++...-++..-|.++....
T Consensus 114 yiStS~~m~LLQ~FYeTTL~ALkdAK--NeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLL 191 (440)
T KOG1464|consen 114 YISTSKNMDLLQEFYETTLDALKDAK--NERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLL 191 (440)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHhhh--cceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhh
Confidence 22233444444556666665544321 112223344579999999999999888888877777766666654322
Q ss_pred HHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh--hChHHHHHHHHHH-----HhCChHHHHHHHHHHHH
Q 000589 1209 DSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK--AHPDLIHAFQAVA-----AAGGSGNSGASANNSLN 1277 (1403)
Q Consensus 1209 ~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~--~~p~~~~a~~~La-----~~G~~~eA~~~~ekAL~ 1277 (1403)
+.|..--++| ..+++...-..+|+ +++.+-. .||....+...-| +.|.+++|..-|=+|.+
T Consensus 192 EiYAlEIQmY------T~qKnNKkLK~lYe--qalhiKSAIPHPlImGvIRECGGKMHlreg~fe~AhTDFFEAFK 259 (440)
T KOG1464|consen 192 EIYALEIQMY------TEQKNNKKLKALYE--QALHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFK 259 (440)
T ss_pred hhHhhHhhhh------hhhcccHHHHHHHH--HHHHhhccCCchHHHhHHHHcCCccccccchHHHHHhHHHHHHh
Confidence 2222222233 56666655555666 7776655 5777776666665 66888888888777776
No 257
>cd01808 hPLIC_N Ubiquitin-like domain of hPLIC-1 and hPLIC2. hPLIC-1 and hPLIC-2 (human homologs of the yeast ubiquitin-like Dsk2 protein) are type2 UBL's (ubiquitin-like) proteins that are thought to serve as adaptors that link the ubiquitination machinery to the proteasome. The hPLIC's have an N-terminal UBL domain that binds the S5a subunit of the proteasome and a C-terminal UBA (ubiquitin-associated) domain that binds a ubiquitylated protein.
Probab=95.64 E-value=0.027 Score=51.14 Aligned_cols=70 Identities=23% Similarity=0.306 Sum_probs=60.4
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|+|+.+.+. .++.+.++++|.+|++.+..... +....+.|.+.| ..|+|...|++. |+++ +++|.||.
T Consensus 1 ~~i~vk~~~g~-~~l~v~~~~TV~~lK~~I~~~~~-i~~~~~~Li~~G-----k~L~d~~tL~~~-~i~~-~stl~l~~ 70 (71)
T cd01808 1 IKVTVKTPKDK-EEIEIAEDASVKDFKEAVSKKFK-ANQEQLVLIFAG-----KILKDTDTLTQH-NIKD-GLTVHLVI 70 (71)
T ss_pred CEEEEEcCCCC-EEEEECCCChHHHHHHHHHHHhC-CCHHHEEEEECC-----eEcCCCCcHHHc-CCCC-CCEEEEEE
Confidence 46899999885 58999999999999999998874 678889999988 789998888887 7888 99999885
No 258
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.62 E-value=0.16 Score=56.03 Aligned_cols=106 Identities=18% Similarity=0.144 Sum_probs=89.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcC---CCCHH-------HHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTG---PMHRE-------VANCCRYLAMVLYHAGDMAGAIMQQHKEL 1067 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g---~~~p~-------~a~a~~~LA~iy~~~G~~~eAi~~~~kAL 1067 (1403)
...+..-|.-++.+|+|.+|...|++|+...++..- |..|+ ....+.++++|+...|+|-++++.+...+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 345677899999999999999999999988776532 22333 23468899999999999999999999988
Q ss_pred HHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1068 IINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1068 ~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.. +|....+|+..|..+...=+.++|..-|.+++++
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~l 293 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLEL 293 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhc
Confidence 76 6888999999999999999999999999999975
No 259
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=95.60 E-value=0.084 Score=60.61 Aligned_cols=108 Identities=17% Similarity=0.085 Sum_probs=93.6
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
..+..|..+-+-|.-|+...+|..|+..|.+.|..- -++....+.+|.+.|.+.+..|+|..|+.-+.+|+.+
T Consensus 76 ep~E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~--- 148 (390)
T KOG0551|consen 76 EPHEQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL--- 148 (390)
T ss_pred ChHHHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 344579999999999999999999999999998862 2333456789999999999999999999999999987
Q ss_pred hcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1073 CLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1073 ~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.|....+|+.-|.|++.+.++.+|...++..+.+.
T Consensus 149 -----~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 -----KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred -----CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57888999999999999999999999988887653
No 260
>cd01792 ISG15_repeat1 ISG15 ubiquitin-like protein, first repeat of 2. ISG15 is a ubiquitin-like protein containing two ubiquitin homology domains that becomes conjugated to a variety of proteins when cells are treated with type I interferon or lipopolysaccharide. Although ISG15 has properties similar to those of other ubiquitin-like molecules, it is a unique member of the ubiquitin-like superfamily, whose expression and conjugation to target proteins are tightly regulated by specific signaling pathways, indicating it may have specialized functions in the immune system.
Probab=95.56 E-value=0.029 Score=52.29 Aligned_cols=74 Identities=15% Similarity=0.133 Sum_probs=61.8
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEe--eeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDL--VLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l--~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
++|+|+.+.|..+.+.+.++++|.||++.+.... .+....+.| .+.| ..|+|-..|+++ |+++ +++|.|+
T Consensus 3 ~~i~Vk~~~G~~~~~~v~~~~TV~~lK~~I~~~~-~i~~~~qrL~~~~~G-----~~L~D~~tL~~~-gi~~-gs~l~l~ 74 (80)
T cd01792 3 WDLKVKMLGGNEFLVSLRDSMTVSELKQQIAQKI-GVPAFQQRLAHLDSR-----EVLQDGVPLVSQ-GLGP-GSTVLLV 74 (80)
T ss_pred eEEEEEeCCCCEEEEEcCCCCcHHHHHHHHHHHh-CCCHHHEEEEeccCC-----CCCCCCCCHHHc-CCCC-CCEEEEE
Confidence 6899999999999999999999999999998776 356667777 5556 789998888876 8888 8999888
Q ss_pred ecCC
Q 000589 162 AALY 165 (1403)
Q Consensus 162 ~~~Y 165 (1403)
....
T Consensus 75 ~~~~ 78 (80)
T cd01792 75 VQNC 78 (80)
T ss_pred EEcc
Confidence 6543
No 261
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=95.55 E-value=0.034 Score=66.14 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH-HHHhh
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD--TAHSYGNMALFYHGLNQTELALRHMSRALL-LLSLS 1115 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~--~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~-l~~~~ 1115 (1403)
.+.++...++.+|..|+|..|...+...=. .+...|...|+ ....++|||.+++++|.|.-+..+|.+|+. .+...
T Consensus 239 s~~~l~LKsq~eY~~gn~~kA~KlL~~sni-~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL 317 (696)
T KOG2471|consen 239 SSMALLLKSQLEYAHGNHPKAMKLLLVSNI-HKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQL 317 (696)
T ss_pred CcHHHHHHHHHHHHhcchHHHHHHHHhccc-ccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHH
Confidence 455677888999999999999887764322 11111222233 334568999999999999999999999995 33222
Q ss_pred c-C--C------CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Q 000589 1116 S-G--P------DHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFN 1177 (1403)
Q Consensus 1116 ~-g--~------d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~ 1177 (1403)
. | + ..-....+++|.|..|...|+.-.|.++|.++...+.+ ...+|..||.++.
T Consensus 318 ~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~--------nPrlWLRlAEcCi 380 (696)
T KOG2471|consen 318 RNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHR--------NPRLWLRLAECCI 380 (696)
T ss_pred hccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhc--------CcHHHHHHHHHHH
Confidence 1 1 0 01124567899999999999999999999999988732 3456777877764
No 262
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=95.55 E-value=0.26 Score=53.31 Aligned_cols=127 Identities=9% Similarity=-0.016 Sum_probs=94.6
Q ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH
Q 000589 1019 TLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT 1098 (1403)
Q Consensus 1019 ~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~ 1098 (1403)
+-++.-+.-++... ....+..++..+|..|...|++++|+..|.++.... ......+..+.++-.+....+++
T Consensus 17 ~~Le~elk~~~~n~--~kesir~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~-----~~~~~~id~~l~~irv~i~~~d~ 89 (177)
T PF10602_consen 17 EKLEAELKDAKSNL--GKESIRMALEDLADHYCKIGDLEEALKAYSRARDYC-----TSPGHKIDMCLNVIRVAIFFGDW 89 (177)
T ss_pred HHHHHHHHHHHhcc--chHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhc-----CCHHHHHHHHHHHHHHHHHhCCH
Confidence 33444444444322 245778899999999999999999999999977652 22345677888889999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1099 ELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1099 ~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.....++.+|-.+... |.+..........-|..+...++|.+|-..|-.+..-.
T Consensus 90 ~~v~~~i~ka~~~~~~--~~d~~~~nrlk~~~gL~~l~~r~f~~AA~~fl~~~~t~ 143 (177)
T PF10602_consen 90 SHVEKYIEKAESLIEK--GGDWERRNRLKVYEGLANLAQRDFKEAAELFLDSLSTF 143 (177)
T ss_pred HHHHHHHHHHHHHHhc--cchHHHHHHHHHHHHHHHHHhchHHHHHHHHHccCcCC
Confidence 9999999999988766 23333334455566777888999999999998876543
No 263
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=95.39 E-value=7.8 Score=45.94 Aligned_cols=242 Identities=14% Similarity=0.074 Sum_probs=148.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
+..-+..|.+..-.|+-..|..+-.++-.+.. .+.+-. ++..-++.-...|+|+.|..-|+-.+.
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~lls----sDqepL--IhlLeAQaal~eG~~~~Ar~kfeAMl~--------- 148 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKLLS----SDQEPL--IHLLEAQAALLEGDYEDARKKFEAMLD--------- 148 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhhhh----ccchHH--HHHHHHHHHHhcCchHHHHHHHHHHhc---------
Confidence 33344456777778899999999888876642 233322 344456777788999999988876544
Q ss_pred ChhHH-HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1078 HPDTA-HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1078 ~p~~~-~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
.|++- .-+..|-.--...|+.+.|..|.+++.... |...++...+-......|+|+.|+++........
T Consensus 149 dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A--------p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~-- 218 (531)
T COG3898 149 DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA--------PQLPWAARATLEARCAAGDWDGALKLVDAQRAAK-- 218 (531)
T ss_pred ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc--------cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHH--
Confidence 34432 222233333467899999999999998753 4445555555566778999999999998876543
Q ss_pred HhCCCcHHH--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHH
Q 000589 1157 LLGEEHIQT--AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAF 1234 (1403)
Q Consensus 1157 ~~G~~~~~~--a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi 1234 (1403)
..+++-... +..+..-+.... .-+...|.....++.++. ++..-+...-+..+ ...|+..++-
T Consensus 219 vie~~~aeR~rAvLLtAkA~s~l-dadp~~Ar~~A~~a~KL~--------pdlvPaav~AAral------f~d~~~rKg~ 283 (531)
T COG3898 219 VIEKDVAERSRAVLLTAKAMSLL-DADPASARDDALEANKLA--------PDLVPAAVVAARAL------FRDGNLRKGS 283 (531)
T ss_pred hhchhhHHHHHHHHHHHHHHHHh-cCChHHHHHHHHHHhhcC--------CccchHHHHHHHHH------Hhccchhhhh
Confidence 222222222 222222222222 235677777777777652 23333333333444 7788988888
Q ss_pred HHHHHHHHHHHHh--hChHHHHHHHHHHHhCChHHHHHHHHHHHHHhhcCCCCcc
Q 000589 1235 NAASTQKAIDILK--AHPDLIHAFQAVAAAGGSGNSGASANNSLNAALLGETLPR 1287 (1403)
Q Consensus 1235 ~~l~~qkALei~~--~~p~~~~a~~~La~~G~~~eA~~~~ekAL~~~~~G~~~p~ 1287 (1403)
.+++ ...+ -||+....|... +.|+. ++.-++++-.+..+.++|..
T Consensus 284 ~ilE-----~aWK~ePHP~ia~lY~~a-r~gdt--a~dRlkRa~~L~slk~nnae 330 (531)
T COG3898 284 KILE-----TAWKAEPHPDIALLYVRA-RSGDT--ALDRLKRAKKLESLKPNNAE 330 (531)
T ss_pred hHHH-----HHHhcCCChHHHHHHHHh-cCCCc--HHHHHHHHHHHHhcCccchH
Confidence 8887 5555 588888777665 34443 44446666555555555443
No 264
>cd01797 NIRF_N amino-terminal ubiquitin-like domain of Np95 and NIRF. NIRF_N This CD represents the amino-terminal ubiquitin-like domain of a family of nuclear proteins that includes Np95 and NIRF (Np95/ICBP90-like RING finger) protein. Both Np95 and NIRF have a domain architecture consisting of a ubiquitin-like domain, a PHD finger, a YDG/SRA domain, Rb-binding motifs and a RING finger domain. Both Np95 and NIRF are ubiquitin ligases that ubiquitinate PCNP (PEST-containing nuclear proteins). While Np95 is capable of binding histones, NIRF is involved in cell cycle regulation.
Probab=95.26 E-value=0.046 Score=50.74 Aligned_cols=73 Identities=12% Similarity=0.192 Sum_probs=62.5
Q ss_pred ccEEEeCCCCce-eEEe-cCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEK-LELQ-LNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~-~~l~-~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+++.|.. +.+. +.+.++|.+|++.|.+.. .+.-....|.|.| ..|+|...|+++ ||++ +++|.|+
T Consensus 1 M~I~vk~~~G~~~~~l~~v~~~~TV~~lK~~i~~~~-gi~~~~QrLi~~G-----k~L~D~~tL~~y-~i~~-~~~i~l~ 72 (78)
T cd01797 1 MWIQVRTMDGKETRTVDSLSRLTKVEELREKIQELF-NVEPECQRLFYRG-----KQMEDGHTLFDY-NVGL-NDIIQLL 72 (78)
T ss_pred CEEEEEcCCCCEEEEeeccCCcCcHHHHHHHHHHHh-CCCHHHeEEEeCC-----EECCCCCCHHHc-CCCC-CCEEEEE
Confidence 368999999987 6894 899999999999999875 4777889999999 889999999887 8888 8888887
Q ss_pred ecC
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
..+
T Consensus 73 ~~~ 75 (78)
T cd01797 73 VRQ 75 (78)
T ss_pred Eec
Confidence 654
No 265
>cd01809 Scythe_N Ubiquitin-like domain of Scythe protein. Scythe protein (also known as Bat3) is an apoptotic regulator that is highly conserved in eukaryotes and contains a ubiquitin-like domain near its N-terminus. Scythe binds reaper, a potent apoptotic inducer, and Scythe/Reaper are thought to signal apoptosis, in part through regulating the folding and activity of apoptotic signaling molecules.
Probab=95.25 E-value=0.044 Score=49.64 Aligned_cols=71 Identities=18% Similarity=0.279 Sum_probs=59.2
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.|.|+.+++..+++.+.++++|.+|++.|..... +.-....|.++| ..|+|...|+++ |+++ +++|.|+.
T Consensus 1 i~i~vk~~~g~~~~~~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~L~d~~~L~~~-~i~~-~~~l~l~~ 71 (72)
T cd01809 1 IEIKVKTLDSQTHTFTVEEEITVLDLKEKIAEEVG-IPVEQQRLIYSG-----RVLKDDETLSEY-KVED-GHTIHLVK 71 (72)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHHHC-cCHHHeEEEECC-----EECCCcCcHHHC-CCCC-CCEEEEEe
Confidence 46899999999999999999999999999988754 344456788887 789998888776 7888 88998874
No 266
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.19 E-value=0.66 Score=50.06 Aligned_cols=98 Identities=16% Similarity=0.050 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+...+|..+...|++++|+..++.++... .|.....-+-.+||.+...+|.+++|+..+...-. +.
T Consensus 91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~---------~~ 156 (207)
T COG2976 91 AALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIKE---------ES 156 (207)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccc---------cc
Confidence 44567888899999999999999998542 23344566778999999999999999988875432 23
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..+......|.++...|+-.+|...|+++++.
T Consensus 157 w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~ 188 (207)
T COG2976 157 WAAIVAELRGDILLAKGDKQEARAAYEKALES 188 (207)
T ss_pred HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHc
Confidence 45556678899999999999999999999986
No 267
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.14 E-value=1.9 Score=55.99 Aligned_cols=193 Identities=11% Similarity=0.037 Sum_probs=110.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
..+..||.+..+.|...+|++.|-+| |+| ..|...-......|.|++-++|+..|....+..+- .
T Consensus 1105 ~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d 1169 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--D 1169 (1666)
T ss_pred HHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--h
Confidence 46888999999999999999988775 223 35677777888899999999998888765433210 0
Q ss_pred HHHHHHH---------------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc
Q 000589 1121 PDVAATF---------------------INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM 1179 (1403)
Q Consensus 1121 p~~a~~~---------------------~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~ 1179 (1403)
.....+| ...|.-+...+.|+.|.-+|.. ..-+..||..+..+
T Consensus 1170 ~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~TLV~L 1233 (1666)
T KOG0985|consen 1170 SELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLASTLVYL 1233 (1666)
T ss_pred HHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHHHHHHH
Confidence 1111111 1223333334444433333321 22355788888999
Q ss_pred CCHHHHHHHHHHHHHHH--HHH---------------hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHH
Q 000589 1180 GAFKLSHQHEKKTYDIL--VKQ---------------LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKA 1242 (1403)
Q Consensus 1180 Gd~~eAi~~lkkAl~i~--~~~---------------lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkA 1242 (1403)
|+|..|....++|-.+. +.. .|-+-.-.++-+..|.. ++...|-+++-+.+++ .+
T Consensus 1234 geyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~------~Yq~rGyFeElIsl~E--a~ 1305 (1666)
T KOG0985|consen 1234 GEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIE------YYQDRGYFEELISLLE--AG 1305 (1666)
T ss_pred HHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHH------HHHhcCcHHHHHHHHH--hh
Confidence 99999999988875431 111 11110000111122223 3488888888888887 55
Q ss_pred HHHHhhChHHHHHHHHHHHhCChHHHHHHH
Q 000589 1243 IDILKAHPDLIHAFQAVAAAGGSGNSGASA 1272 (1403)
Q Consensus 1243 Lei~~~~p~~~~a~~~La~~G~~~eA~~~~ 1272 (1403)
+-+-+.|-....-+.-|....++++-.+++
T Consensus 1306 LGLERAHMgmfTELaiLYskykp~km~EHl 1335 (1666)
T KOG0985|consen 1306 LGLERAHMGMFTELAILYSKYKPEKMMEHL 1335 (1666)
T ss_pred hchhHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence 544445554444333333444444444443
No 268
>cd01790 Herp_N Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein. Herp (Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain protein) , is an integral membrane protein that is induced by the endoplasmic reticulum (ER) stress response pathway and is involved in improving the balance of folding capacity and protein loads in the ER. Herp has an N-terminal ubiquitin-like domain that is involved in Herp degradation, but is not necessary for its enhancement of amyloid beta-protein generation.
Probab=95.07 E-value=0.055 Score=50.13 Aligned_cols=73 Identities=11% Similarity=0.058 Sum_probs=59.7
Q ss_pred ccEEEeCCCCce--eEEecCCCChHHHHHHHhhhcC-cceeeeeeEeeeCCCCCCcccccccccccccc-ccCCCccEEE
Q 000589 84 YPVTVKTQSNEK--LELQLNPGDSVMDIRQFLLDAP-ETCFFTCYDLVLHTKDGSTHHLEDYNEISEVA-DITTGGCTLE 159 (1403)
Q Consensus 84 ~~v~v~~p~~~~--~~l~~~~~~~v~dv~~~l~~~~-~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~-~~~~~~~~l~ 159 (1403)
++|+|+.|++.+ +++.+.++++|.|+++-|.... ..+.-..-.|.|.| ..|.|-..|+++- .+.+ +-++.
T Consensus 2 i~l~IK~~~~~~~~~~ve~~~~~TV~~lK~~i~~~~~~~~~~~~QrLIy~G-----KiLkD~~tL~~~~~~~~~-~~tiH 75 (79)
T cd01790 2 VTLLIKSPNQKYEDQTVSCFLNWTVGELKTHLSRVYPSKPLEQDQRLIYSG-----KLLPDHLKLRDVLRKQDE-YHMVH 75 (79)
T ss_pred eEEEEECCCCCeEEEEEecCCcChHHHHHHHHHHhcCCCCChhHeEEEEcC-----eeccchhhHHHHhhcccC-CceEE
Confidence 689999999977 6666689999999999999874 34445777899999 8899999999883 4555 88999
Q ss_pred EEe
Q 000589 160 MVA 162 (1403)
Q Consensus 160 ~v~ 162 (1403)
||.
T Consensus 76 LV~ 78 (79)
T cd01790 76 LVC 78 (79)
T ss_pred EEe
Confidence 884
No 269
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.05 E-value=0.19 Score=55.43 Aligned_cols=107 Identities=16% Similarity=0.074 Sum_probs=89.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---CChhH-------HHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL---DHPDT-------AHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~---d~p~~-------~~a~~nLA~~~~~~G~~~eAl~~l~rAL 1109 (1403)
..++..-|+-++.+|+|.+|...|+.|+...+...-. ..|+. ...+.|++.|+...|+|-+++++....+
T Consensus 178 v~~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL 257 (329)
T KOG0545|consen 178 VPVLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEIL 257 (329)
T ss_pred hHHHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHH
Confidence 3456778889999999999999999999987665322 23333 3457899999999999999999998888
Q ss_pred HHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1110 LLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1110 ~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.. +|....+|+.-|.+....=+.++|..-|.++|++-
T Consensus 258 ~~--------~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ld 294 (329)
T KOG0545|consen 258 RH--------HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELD 294 (329)
T ss_pred hc--------CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcC
Confidence 54 68889999999999999999999999999999864
No 270
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=95.00 E-value=4 Score=51.12 Aligned_cols=59 Identities=29% Similarity=0.320 Sum_probs=31.8
Q ss_pred cChhhHHHHHHHHhhcCcCCceecCC---CCCeeeeecccccccccccCchhHHHhhhhc--CCCCCCCCC
Q 000589 577 WNEDFHSKVLEAAKRLHLKEHTVLDG---SGNVFKLAAPVECKGIVGSDDRHYLLDLMRV--TPRDANYTG 642 (1403)
Q Consensus 577 ~~~~~~~~~~~~a~~l~lk~H~v~~~---~~~~~~l~~s~e~kgi~G~DgR~YilDl~R~--~P~d~~~~~ 642 (1403)
+|++|.+-+..+-..---.+|.|+-. +|. .+-+...| +-+|-|.|-|-.. +|.|.+|.+
T Consensus 370 ~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~-i~e~s~le------~~~~~~~l~LCNSIGT~lD~kytd 433 (1189)
T KOG2041|consen 370 TNEKTVKTVTHFENMAFYREHCVLINRQDDGV-IPEYSTLE------NRSRVYFLQLCNSIGTSLDYKYTD 433 (1189)
T ss_pred cChhhhhhhcceeehheecccEEEEeccccCC-Ccchhhhh------cccceEEEeeecccCCcCCCCcce
Confidence 35555554443322223347888622 222 22333444 4458888877665 788888753
No 271
>cd01803 Ubiquitin Ubiquitin. Ubiquitin (includes Ubq/RPL40e and Ubq/RPS27a fusions as well as homopolymeric multiubiquitin protein chains)
Probab=95.00 E-value=0.058 Score=49.42 Aligned_cols=72 Identities=22% Similarity=0.345 Sum_probs=60.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|+|+.++|..+.+.+.+.++|.+|++.|..... +.-.+..|.+.| ..|+|...|++. |+++ +.+|.++..
T Consensus 1 m~i~v~~~~g~~~~~~v~~~~tV~~lK~~i~~~~g-~~~~~q~L~~~g-----~~L~d~~~L~~~-~i~~-~~~i~l~~~ 72 (76)
T cd01803 1 MQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEG-IPPDQQRLIFAG-----KQLEDGRTLSDY-NIQK-ESTLHLVLR 72 (76)
T ss_pred CEEEEEcCCCCEEEEEECCcCcHHHHHHHHHHHhC-CCHHHeEEEECC-----EECCCCCcHHHc-CCCC-CCEEEEEEE
Confidence 36899999999999999999999999999998764 455678888888 779998888875 7887 788888753
No 272
>cd01796 DDI1_N DNA damage inducible protein 1 ubiquitin-like domain. DDI1_N DDI1 (DNA damage inducible protein 1) has an amino-terminal ubiquitin-like domain, an retroviral protease-like (RVP-like) domain, and a UBA (ubiquitin-associated) domain. This CD represents the amino-terminal ubiquitin-like domain of DDI1.
Probab=94.80 E-value=0.056 Score=49.19 Aligned_cols=67 Identities=15% Similarity=0.220 Sum_probs=55.0
Q ss_pred EEEeCC-CCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccc-cccccccCCCccEEEE
Q 000589 86 VTVKTQ-SNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNE-ISEVADITTGGCTLEM 160 (1403)
Q Consensus 86 v~v~~p-~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e-~~~~~~~~~~~~~l~~ 160 (1403)
|+|+++ +++.+.|.+.++++|.+|++.+..... +.-....|.++| ..|+|-.. |++. |+++ ++.|.|
T Consensus 1 l~v~~~~~g~~~~l~v~~~~TV~~lK~~I~~~~g-ip~~~q~Li~~G-----k~L~D~~~~L~~~-gi~~-~~~l~l 69 (71)
T cd01796 1 ITVYTARSETTFSLDVDPDLELENFKALCEAESG-IPASQQQLIYNG-----RELVDNKRLLALY-GVKD-GDLVVL 69 (71)
T ss_pred CEEEECCCCCEEEEEECCcCCHHHHHHHHHHHhC-CCHHHeEEEECC-----eEccCCcccHHHc-CCCC-CCEEEE
Confidence 589999 889999999999999999999988764 566778999999 78888644 4444 7888 777765
No 273
>cd01793 Fubi Fubi ubiquitin-like protein. Fubi is a ubiquitin-like protein encoded by the fau gene which has an N-terminal ubiquitin-like domain (also referred to as FUBI) fused to the ribosomal protein S30. Fubi is thought to be a tumor suppressor protein and the FUBI domain may act as a substitute or an inhibitor of ubiquitin or one of ubiquitin's close relatives UCRP, FAT10, and Nedd8.
Probab=94.76 E-value=0.076 Score=48.66 Aligned_cols=70 Identities=21% Similarity=0.267 Sum_probs=59.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
++|.|+.. +.+.+.+.++++|.||++.+..... +.-....|.+.| ..|+|...|++. |+++ +++|.|+..
T Consensus 1 mqi~vk~~--~~~~l~v~~~~tV~~lK~~i~~~~g-ip~~~q~Li~~G-----k~L~D~~tL~~~-~i~~-~~tl~l~~~ 70 (74)
T cd01793 1 MQLFVRAQ--NTHTLEVTGQETVSDIKAHVAGLEG-IDVEDQVLLLAG-----VPLEDDATLGQC-GVEE-LCTLEVAGR 70 (74)
T ss_pred CEEEEECC--CEEEEEECCcCcHHHHHHHHHhhhC-CCHHHEEEEECC-----eECCCCCCHHHc-CCCC-CCEEEEEEe
Confidence 36788884 6789999999999999999988764 667888999999 889999999885 7888 899999854
No 274
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=94.66 E-value=5.8 Score=45.06 Aligned_cols=224 Identities=8% Similarity=0.000 Sum_probs=132.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHH----HHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELII----NERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i----~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+|.-.....++++|+..|.+.+.- -++. -.+.-.+..+|+.+|...|++..--+......+.+.... .
T Consensus 8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~----~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ft---k 80 (421)
T COG5159 8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKT----LNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFT---K 80 (421)
T ss_pred HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh----hhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhc---c
Confidence 4566666778888888888877654 1111 123345678999999999999887777777776665542 2
Q ss_pred HHHHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAM-MYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1121 p~~a~~~~nLA~-iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
|....+...|-. .-.....++.-+..+...++...+- .........-..+..+++..|.|.+|+....-.+.-+++.
T Consensus 81 ~k~~KiirtLiekf~~~~dsl~dqi~v~~~~iewA~rE--kr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~ 158 (421)
T COG5159 81 PKITKIIRTLIEKFPYSSDSLEDQIKVLTALIEWADRE--KRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKY 158 (421)
T ss_pred hhHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhh
Confidence 444444333332 2233456777788877777765431 0111222334567888999999999999999888877765
Q ss_pred hCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH------HhCChHHHHHHHH
Q 000589 1200 LGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA------AAGGSGNSGASAN 1273 (1403)
Q Consensus 1200 lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La------~~G~~~eA~~~~e 1273 (1403)
- +.+.....+..-..+| ....+..++...+...+.+...-.-|....+...|- .-.+|.-|..+|-
T Consensus 159 D--DK~~Li~vhllESKvy------h~irnv~KskaSLTaArt~Ans~YCPpqlqa~lDL~sGIlhcdd~dyktA~SYF~ 230 (421)
T COG5159 159 D--DKINLITVHLLESKVY------HEIRNVSKSKASLTAARTLANSAYCPPQLQAQLDLLSGILHCDDRDYKTASSYFI 230 (421)
T ss_pred c--CccceeehhhhhHHHH------HHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHHHhccceeeccccchhHHHHHH
Confidence 2 2233222222222333 444555555544442222222223444444444443 5567888999998
Q ss_pred HHHHHhhcCCCC
Q 000589 1274 NSLNAALLGETL 1285 (1403)
Q Consensus 1274 kAL~~~~~G~~~ 1285 (1403)
+|++--..+..|
T Consensus 231 Ea~Egft~l~~d 242 (421)
T COG5159 231 EALEGFTLLKMD 242 (421)
T ss_pred HHHhccccccch
Confidence 888843344444
No 275
>cd01805 RAD23_N Ubiquitin-like domain of RAD23. RAD23 belongs to a family of adaptor molecules having affinity for both the proteasome and ubiquitinylated proteins and thought to shuttle these ubiquitinylated proteins to the proteasome for destruction. RAD23 interacts with ubiquitin through its C-terminal ubiquitin-associated domains (UBA) and with the proteasome through its N-terminal ubiquitin-like domain (UBL).
Probab=94.65 E-value=0.09 Score=48.40 Aligned_cols=71 Identities=15% Similarity=0.246 Sum_probs=57.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcc-eeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPET-CFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t-~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+.+++..+.+.+.++++|.++++.|...... ..-....|.++| ..|+|...|++. |+++ +.+|.|+
T Consensus 1 m~i~vk~~~g~~~~l~v~~~~TV~~lK~~i~~~~~i~~~~~~q~L~~~G-----~~L~d~~~L~~~-~i~~-~~~i~~~ 72 (77)
T cd01805 1 MKITFKTLKQQTFPIEVDPDDTVAELKEKIEEEKGCDYPPEQQKLIYSG-----KILKDDTTLEEY-KIDE-KDFVVVM 72 (77)
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCCChhHeEEEECC-----EEccCCCCHHHc-CCCC-CCEEEEE
Confidence 468999999999999999999999999999987642 145667788888 889998888875 7888 5555544
No 276
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.59 E-value=0.39 Score=46.21 Aligned_cols=82 Identities=18% Similarity=0.126 Sum_probs=62.7
Q ss_pred HHHcCCHHHHHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHH
Q 000589 1008 QLAEGLLSEAYTLFSEAFSILQQVTGPM-HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYG 1086 (1403)
Q Consensus 1008 ~~~~G~~eeA~~~l~eAL~l~~~i~g~~-~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~ 1086 (1403)
.+..|+|.+|++.+.+..+......... ......++.++|.++...|++++|+..+++|+.+.++. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876643322 12456778899999999999999999999999998875 34444555555
Q ss_pred HHHHH
Q 000589 1087 NMALF 1091 (1403)
Q Consensus 1087 nLA~~ 1091 (1403)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55444
No 277
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.57 E-value=0.076 Score=41.40 Aligned_cols=31 Identities=23% Similarity=0.487 Sum_probs=26.9
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~ 1156 (1403)
++.+||.+|..+|+|++|+.+|+++|.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 4789999999999999999999999977654
No 278
>cd01763 Sumo Small ubiquitin-related modifier (SUMO). Small ubiquitin-related modifier (SUMO) proteins are conjugated to numerous intracellular targets and serve to modulate protein interaction, localization, activity or stability. SUMO (also known as "Smt3" and "sentrin" in other organisms) is linked to several different pathways, including nucleocytoplasmic transport. Attachment of SUMO to targets proteins is stimulated by PIAS (Protein inhibitor of activated STATs) proteins which serve as E3-like ligases.
Probab=94.52 E-value=0.17 Score=47.99 Aligned_cols=78 Identities=9% Similarity=0.164 Sum_probs=67.1
Q ss_pred CCCccccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCcc
Q 000589 77 KQGELHLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGC 156 (1403)
Q Consensus 77 ~~~~~~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~ 156 (1403)
+..+...++|.|+.+.+..+.+.+.++++|..|.+.+.+... .....+.|.++| .+|++...+.++ |+.+ +.
T Consensus 5 ~~~~~~~i~I~v~~~~g~~~~~~v~~~~~l~~l~~~y~~~~g-i~~~~~rf~f~G-----~~L~~~~T~~~l-~m~d-~d 76 (87)
T cd01763 5 KGEISEHINLKVKGQDGNEVFFKIKRSTPLKKLMEAYCQRQG-LSMNSVRFLFDG-----QRIRDNQTPDDL-GMED-GD 76 (87)
T ss_pred CCCCCCeEEEEEECCCCCEEEEEEcCCCHHHHHHHHHHHHhC-CCccceEEEECC-----eECCCCCCHHHc-CCCC-CC
Confidence 334446789999999999999999999999999999999865 457899999999 899999888888 7888 78
Q ss_pred EEEEEe
Q 000589 157 TLEMVA 162 (1403)
Q Consensus 157 ~l~~v~ 162 (1403)
+|.++.
T Consensus 77 ~I~v~l 82 (87)
T cd01763 77 EIEVML 82 (87)
T ss_pred EEEEEE
Confidence 888774
No 279
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=94.50 E-value=0.48 Score=45.59 Aligned_cols=82 Identities=18% Similarity=0.154 Sum_probs=62.7
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC-ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLD-HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d-~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~ 1128 (1403)
....|+|.+|++.+.+............ ......++.++|.++...|++++|+..+++|+.+.+.. .|......++.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Are~--~D~~~l~~al~ 85 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAREN--GDRRCLAYALS 85 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH--CCHHHHHHHHH
Confidence 4578999999999999999876653322 12456678899999999999999999999999999886 44455555555
Q ss_pred HHHHH
Q 000589 1129 NVAMM 1133 (1403)
Q Consensus 1129 nLA~i 1133 (1403)
.+..+
T Consensus 86 ~~~~l 90 (94)
T PF12862_consen 86 WLANL 90 (94)
T ss_pred HHHHH
Confidence 55443
No 280
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.44 E-value=4.3 Score=52.60 Aligned_cols=192 Identities=12% Similarity=0.092 Sum_probs=110.1
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMA 1089 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA 1089 (1403)
..+++..|+....+.+.. ||....+...-|.++.++|+.++|..+++ ++.. .+.++ -..+.-+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le-~~~~----~~~~D---~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLE-ALYG----LKGTD---DLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHh-hhcc----CCCCc---hHHHHHHH
Confidence 456788888877777665 67777777778889999999999995443 3332 12232 33455688
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHH
Q 000589 1090 LFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCY 1169 (1403)
Q Consensus 1090 ~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~ 1169 (1403)
.+|..++++++|..+|++++.. .|. -..++.+=++|.+.+.|.+-.+ .|+++++. +|.+ +.+ .|
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~--------~P~-eell~~lFmayvR~~~yk~qQk---aa~~LyK~-~pk~-~yy--fW 148 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQK--------YPS-EELLYHLFMAYVREKSYKKQQK---AALQLYKN-FPKR-AYY--FW 148 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhh--------CCc-HHHHHHHHHHHHHHHHHHHHHH---HHHHHHHh-CCcc-cch--HH
Confidence 8999999999999999999864 243 4445566667777776654332 34444432 2322 222 23
Q ss_pred HHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1170 HALAIAFNCMGAFKLSHQ--HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~--~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.-+..++...-..+.+.. +.--|-..+++.+.... ... ..+.+..+-.....++++++|...+.
T Consensus 149 sV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~g--k~~---s~aE~~Lyl~iL~~~~k~~eal~~l~ 214 (932)
T KOG2053|consen 149 SVISLILQSIFSENELLDPILLALAEKMVQKLLEKKG--KIE---SEAEIILYLLILELQGKYQEALEFLA 214 (932)
T ss_pred HHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCC--ccc---hHHHHHHHHHHHHhcccHHHHHHHHH
Confidence 334444444444444443 11111122222222220 111 11111112223477888999998885
No 281
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=94.42 E-value=0.5 Score=54.55 Aligned_cols=105 Identities=21% Similarity=0.168 Sum_probs=91.1
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
+.|.-|-.-|.-|+...+|..|+..|.+.|..- ..|..-.+..|.|.|.+.+..|+|..|+.-..+|+.+
T Consensus 79 E~Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~k----c~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~------ 148 (390)
T KOG0551|consen 79 EQAENYKEEGNEYFKEKRYKDAVESYTEGLKKK----CADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKL------ 148 (390)
T ss_pred HHHHHHHHHhHHHHHhhhHHHHHHHHHHHHhhc----CCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhc------
Confidence 477788888999999999999999999998752 2344456778999999999999999999999999965
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.|....+++.=|.++..+.++.+|..+.++.+.+.
T Consensus 149 --~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d 183 (390)
T KOG0551|consen 149 --KPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQID 183 (390)
T ss_pred --CcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhh
Confidence 57778899999999999999999999999887765
No 282
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.34 E-value=0.087 Score=41.07 Aligned_cols=31 Identities=19% Similarity=0.235 Sum_probs=26.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINER 1072 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er 1072 (1403)
+|.+||.+|..+|+|++|+.+|++++.+...
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~~~ 31 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALALARD 31 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHHhccc
Confidence 5789999999999999999999999977543
No 283
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.26 E-value=4.3 Score=48.32 Aligned_cols=149 Identities=15% Similarity=0.159 Sum_probs=106.3
Q ss_pred cHHHHHhhhhhhhh-cCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCC
Q 000589 977 ETSDILNLQPVVKH-SVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGD 1055 (1403)
Q Consensus 977 ~~~dI~~l~pvvK~-~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~ 1055 (1403)
..++|..+..++-. .......+..+...+.+....|+++.|..++.++...... .......+....+.++...|+
T Consensus 124 ~~~~il~~R~~~l~~~~~~~~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~----~~~~~~~v~~e~akllw~~g~ 199 (352)
T PF02259_consen 124 VWEPILSLRRLVLSLILLPEELAETWLKFAKLARKAGNFQLALSALNRLFQLNPS----SESLLPRVFLEYAKLLWAQGE 199 (352)
T ss_pred HHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCc----ccCCCcchHHHHHHHHHHcCC
Confidence 45555555433322 3335667889999999999999999999999987765211 111144567778899999999
Q ss_pred HHHHHHHHHHHHH-HHHHhc-------------------------CCCChhHHHHHHHHHHHHHHC------CCHHHHHH
Q 000589 1056 MAGAIMQQHKELI-INERCL-------------------------GLDHPDTAHSYGNMALFYHGL------NQTELALR 1103 (1403)
Q Consensus 1056 ~~eAi~~~~kAL~-i~er~l-------------------------g~d~p~~~~a~~nLA~~~~~~------G~~~eAl~ 1103 (1403)
..+|+..++..+. ...... .......+.++..+|...... +..++++.
T Consensus 200 ~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~ 279 (352)
T PF02259_consen 200 QEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILK 279 (352)
T ss_pred HHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHH
Confidence 9999999998887 332210 112234567788888888888 89999999
Q ss_pred HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc
Q 000589 1104 HMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1104 ~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~ 1137 (1403)
.|.+|+.+ +|....+++.+|..+...
T Consensus 280 ~~~~a~~~--------~~~~~k~~~~~a~~~~~~ 305 (352)
T PF02259_consen 280 YYKEATKL--------DPSWEKAWHSWALFNDKL 305 (352)
T ss_pred HHHHHHHh--------ChhHHHHHHHHHHHHHHH
Confidence 99999976 355666788888776554
No 284
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=94.23 E-value=10 Score=43.38 Aligned_cols=185 Identities=15% Similarity=0.098 Sum_probs=113.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCC------C----HHHHHHHHHHHHHHHhcC--------------CHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPM------H----REVANCCRYLAMVLYHAG--------------DMA 1057 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~------~----p~~a~a~~~LA~iy~~~G--------------~~~ 1057 (1403)
+.+-++++..|+..+|+.-++.=+..+....++. . .-.+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567889999999999999999999888876651 1 112333444555543322 122
Q ss_pred HHHHHHHHHHHHHHHhcC-CC-------------------ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1058 GAIMQQHKELIINERCLG-LD-------------------HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1058 eAi~~~~kAL~i~er~lg-~d-------------------~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
.|..+...--...+.... ++ .+.....+..+.............+.++.+|+..+...
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~-- 171 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKY-- 171 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHh--
Confidence 333332222222222210 00 01111111111111122334556788899999887764
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEK 1190 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lk 1190 (1403)
........+...||..|...|+|++|+.+|+.+...+.+ .........++..|..|+...|+.+..+.+.-
T Consensus 172 ~~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~--egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~l 242 (247)
T PF11817_consen 172 GQNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRR--EGWWSLLTEVLWRLLECAKRLGDVEDYLTTSL 242 (247)
T ss_pred ccchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 224556677789999999999999999999999776643 12345566788889999999999887776543
No 285
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=94.22 E-value=2.9 Score=53.49 Aligned_cols=150 Identities=17% Similarity=0.156 Sum_probs=106.5
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 000589 1013 LLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA-----GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGN 1087 (1403)
Q Consensus 1013 ~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~-----G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~n 1087 (1403)
...+|..+++.+... ....+...+|.+|..- .+.+.|+.+++.+..-+.+.. +.....+++.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456788888877665 3455667777777654 789999999999987322110 0112336788
Q ss_pred HHHHHHHCC-----CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhC
Q 000589 1088 MALFYHGLN-----QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG---KMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1088 LA~~~~~~G-----~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g---~~deAl~~lekAL~l~~~~~G 1159 (1403)
||.+|.... ++..|+.+|.++-.+ .+ ..+.+.||.++..-. ++..|..+|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-------g~---~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL-------GN---PDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc-------CC---chHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998743 778899999998764 22 345788898887665 578899999888763
Q ss_pred CCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCM----GAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~----Gd~~eAi~~lkkAl~i 1195 (1403)
....+++.+|.+|..- -+...|..+++++.+.
T Consensus 358 ----G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~ 393 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELGLGVERNLELAFAYYKKAAEK 393 (552)
T ss_pred ----CChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHc
Confidence 2345677888887653 4788999999998764
No 286
>cd01791 Ubl5 UBL5 ubiquitin-like modifier. UBL5 (also known as HUB1) is a ubiquitin-like modifier that is both widely expressed and highly phylogenetically conserved. At the C-terminal end of the ubiquitin-like fold of UBL5 is a di-tyrosine motif followed by a single variable residue instead of the characteristic di-glycine found in all other ubiquitin-like modifiers. ULB5 interacts with a cyclin-like kinase called CLK4 but not with other cyclin-like kinase family members.
Probab=94.13 E-value=0.14 Score=46.92 Aligned_cols=70 Identities=17% Similarity=0.254 Sum_probs=58.0
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+|+...|.++.+.+.++++|.||++.|.... .+.--.-.|.+.| ..|+|...|.+. ||++ ++++.|-
T Consensus 2 ~~i~vkt~~Gk~~~~~v~~~~TV~~LK~~I~~~~-~~~~~~qrLi~~G-----k~L~D~~tL~~y-gi~~-~stv~l~ 71 (73)
T cd01791 2 IEVVCNDRLGKKVRVKCNPDDTIGDLKKLIAAQT-GTRPEKIVLKKWY-----TIFKDHISLGDY-EIHD-GMNLELY 71 (73)
T ss_pred EEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHHh-CCChHHEEEEeCC-----cCCCCCCCHHHc-CCCC-CCEEEEE
Confidence 5789999999999999999999999999998776 3555555677777 789998888876 7888 8888874
No 287
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=94.10 E-value=0.1 Score=39.68 Aligned_cols=31 Identities=32% Similarity=0.586 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|+++|.+|..+|++++|+.+|++|+++.
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 3579999999999999999999999999874
No 288
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.09 E-value=21 Score=44.42 Aligned_cols=233 Identities=12% Similarity=-0.012 Sum_probs=139.2
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQ 1062 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~ 1062 (1403)
....-+++..|+. |.-++..++.+...|+.+.|+.+++.+++...+ .-..-+++.+|+++..+.+|..|..+
T Consensus 254 ~~Ll~~~~~~p~g--a~wll~~ar~l~~~g~~eaa~~~~~~~v~~~~k------Q~~~l~~fE~aw~~v~~~~~~~aad~ 325 (546)
T KOG3783|consen 254 KALKKYRKRYPKG--ALWLLMEARILSIKGNSEAAIDMESLSIPIRMK------QVKSLMVFERAWLSVGQHQYSRAADS 325 (546)
T ss_pred HHhHHHHHhCCCC--ccHHHHHHHHHHHcccHHHHHHHHHhcccHHHH------HHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence 3344444444443 445566677788888899999999988883221 23466889999999999999999999
Q ss_pred HHHHHHHHHHhcCCCChhHHHH-HHHHH-HHHH--------HCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH--------
Q 000589 1063 QHKELIINERCLGLDHPDTAHS-YGNMA-LFYH--------GLNQTELALRHMSRALLLLSLSSGPDHPDVA-------- 1124 (1403)
Q Consensus 1063 ~~kAL~i~er~lg~d~p~~~~a-~~nLA-~~~~--------~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a-------- 1124 (1403)
+....... +..++ |..++ .|+. ..|+-+.|..+++.+..+.... |.+-|...
T Consensus 326 ~~~L~des---------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~~~l~~~a-~K~~P~E~f~~RKver 395 (546)
T KOG3783|consen 326 FDLLRDES---------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVGEELLANA-GKNLPLEKFIVRKVER 395 (546)
T ss_pred HHHHHhhh---------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHHHHHHHhc-cccCchhHHHHHHHHH
Confidence 88877653 22222 22333 3332 2446667766666666554431 12212110
Q ss_pred --------------HHHHHHHHHHHHcCC--HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1125 --------------ATFINVAMMYQDIGK--MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQH 1188 (1403)
Q Consensus 1125 --------------~~~~nLA~iy~~~g~--~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~ 1188 (1403)
.-++.++.++..... .++.+ +...-.+...-.+..+...-+..+|.++..+|+...|..+
T Consensus 396 f~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd~~lk~lL~g~~lR~Lg~~~~a~~~ 471 (546)
T KOG3783|consen 396 FVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDDEGLKYLLKGVILRNLGDSEVAPKC 471 (546)
T ss_pred HhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 012333333332221 12222 2221111111123445556678899999999999999999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhc-HHHHHHHHHHHHHHHHH
Q 000589 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQ-KGQAFNAASTQKAIDIL 1246 (1403)
Q Consensus 1189 lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~-~~eAi~~l~~qkALei~ 1246 (1403)
++.+.+- ......++.....+++.||.++ ..++. ..++..++. +|-+-.
T Consensus 472 f~i~~~~-e~~~~~d~w~~PfA~YElA~l~------~~~~g~~~e~~~~L~--kAr~~~ 521 (546)
T KOG3783|consen 472 FKIQVEK-ESKRTEDLWAVPFALYELALLY------WDLGGGLKEARALLL--KAREYA 521 (546)
T ss_pred HHHHHHH-HHhhccccccccHHHHHHHHHH------HhcccChHHHHHHHH--HHHhhc
Confidence 9988764 2223345556677888899888 55655 888888877 554444
No 289
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.09 E-value=1.5 Score=50.30 Aligned_cols=195 Identities=19% Similarity=0.234 Sum_probs=115.1
Q ss_pred HHHHHHHHHHHHHHhhhcccCCCc-------cHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 953 RNLCQKVGISVTARKYDFNAATPF-------ETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAF 1025 (1403)
Q Consensus 953 r~i~~k~Giql~~~~Y~f~~~~~f-------~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL 1025 (1403)
..++..+||+-...-|.|....|. .++.|..+ +.+..+. .....+..+.-....|++.+|...|..++
T Consensus 87 p~vAaqfgiqsIPtV~af~dGqpVdgF~G~qPesqlr~~---ld~~~~~--~~e~~~~~~~~~~~~e~~~~a~~~~~~al 161 (304)
T COG3118 87 PMVAAQFGVQSIPTVYAFKDGQPVDGFQGAQPESQLRQF---LDKVLPA--EEEEALAEAKELIEAEDFGEAAPLLKQAL 161 (304)
T ss_pred hhHHHHhCcCcCCeEEEeeCCcCccccCCCCcHHHHHHH---HHHhcCh--HHHHHHHHhhhhhhccchhhHHHHHHHHH
Confidence 345677888766667777654332 22233332 3333333 34445567788899999999999999999
Q ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHH
Q 000589 1026 SILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHM 1105 (1403)
Q Consensus 1026 ~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l 1105 (1403)
.. .++...+...|+.+|...|+.+.|...+...=.- ........+..--.++.......+...+-
T Consensus 162 ~~--------~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-------~~~~~~~~l~a~i~ll~qaa~~~~~~~l~ 226 (304)
T COG3118 162 QA--------APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-------AQDKAAHGLQAQIELLEQAAATPEIQDLQ 226 (304)
T ss_pred Hh--------CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-------chhhHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 98 3455778899999999999999998877652111 00111111111011222222222222222
Q ss_pred HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCH
Q 000589 1106 SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAF 1182 (1403)
Q Consensus 1106 ~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~ 1182 (1403)
+++- .+|+...+-+.||..|...|++++|++.+-..++... |.+ .......|-.++...|.-
T Consensus 227 ~~~a---------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~---~~~---d~~~Rk~lle~f~~~g~~ 288 (304)
T COG3118 227 RRLA---------ADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR---GFE---DGEARKTLLELFEAFGPA 288 (304)
T ss_pred HHHH---------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc---ccc---CcHHHHHHHHHHHhcCCC
Confidence 2211 2466667788999999999999999999877766532 111 122334455555556633
No 290
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.09 E-value=2.3 Score=46.09 Aligned_cols=100 Identities=16% Similarity=0.041 Sum_probs=78.9
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDH 1120 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~ 1120 (1403)
.+...+|..+...+++++|+..++.++... .|......+-.+||.+...+|.+++|+..+.... ++
T Consensus 90 laaL~lAk~~ve~~~~d~A~aqL~~~l~~t-----~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~---------~~ 155 (207)
T COG2976 90 LAALELAKAEVEANNLDKAEAQLKQALAQT-----KDENLKALAALRLARVQLQQKKADAALKTLDTIK---------EE 155 (207)
T ss_pred HHHHHHHHHHHhhccHHHHHHHHHHHHccc-----hhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccc---------cc
Confidence 345678889999999999999999998653 2334445566789999999999999998876543 23
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+...-..|.++...|+-++|+..|++|+...
T Consensus 156 ~w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 156 SWAAIVAELRGDILLAKGDKQEARAAYEKALESD 189 (207)
T ss_pred cHHHHHHHHhhhHHHHcCchHHHHHHHHHHHHcc
Confidence 3344556667999999999999999999999863
No 291
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=94.07 E-value=3.5 Score=53.34 Aligned_cols=108 Identities=21% Similarity=0.201 Sum_probs=76.9
Q ss_pred hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHH
Q 000589 1052 HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVA 1131 (1403)
Q Consensus 1052 ~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA 1131 (1403)
..+++.+|+....+.++- ||....+...-|..+.++|++++|..+++. ++. .+.+ .-.++..+-
T Consensus 21 d~~qfkkal~~~~kllkk--------~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~-~~~----~~~~---D~~tLq~l~ 84 (932)
T KOG2053|consen 21 DSSQFKKALAKLGKLLKK--------HPNALYAKVLKALSLFRLGKGDEALKLLEA-LYG----LKGT---DDLTLQFLQ 84 (932)
T ss_pred hhHHHHHHHHHHHHHHHH--------CCCcHHHHHHHHHHHHHhcCchhHHHHHhh-hcc----CCCC---chHHHHHHH
Confidence 346777887777776654 677777888889999999999999965543 332 1222 344577788
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKL 1184 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~e 1184 (1403)
.+|.+++++++|..+|++++..+ |. -..+..+=.+|.+.++|.+
T Consensus 85 ~~y~d~~~~d~~~~~Ye~~~~~~--------P~-eell~~lFmayvR~~~yk~ 128 (932)
T KOG2053|consen 85 NVYRDLGKLDEAVHLYERANQKY--------PS-EELLYHLFMAYVREKSYKK 128 (932)
T ss_pred HHHHHHhhhhHHHHHHHHHHhhC--------Cc-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999998754 22 3334445556666666643
No 292
>cd01812 BAG1_N Ubiquitin-like domain of BAG1. BAG1_N N-terminal ubiquitin-like (Ubl) domain of the BAG1 protein. This domain occurs together with the BAG domain and is closely related to the Ubl domain of a family of deubiquitinases that includes Rpn11, UBP6 (USP14), USP7 (HAUSP).
Probab=94.06 E-value=0.12 Score=46.74 Aligned_cols=70 Identities=14% Similarity=0.228 Sum_probs=57.7
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
++|+|+.. +...++.+.++++|.++++.|..... +.-.+..|.++| ..|+|-..|+++ |+++ +++|.|+.
T Consensus 1 i~i~vk~~-g~~~~i~v~~~~tv~~lK~~i~~~~g-i~~~~q~L~~~g-----~~l~d~~~L~~~-~i~~-g~~l~v~~ 70 (71)
T cd01812 1 IRVRVKHG-GESHDLSISSQATFGDLKKMLAPVTG-VEPRDQKLIFKG-----KERDDAETLDMS-GVKD-GSKVMLLE 70 (71)
T ss_pred CEEEEEEC-CEEEEEEECCCCcHHHHHHHHHHhhC-CChHHeEEeeCC-----cccCccCcHHHc-CCCC-CCEEEEec
Confidence 46889997 77789999999999999999988763 556678888888 678887777776 6888 88998875
No 293
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=93.95 E-value=0.11 Score=39.57 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+++++|.+|..+|++++|+.+|++|+++
T Consensus 1 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 1 AEAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 468999999999999999999999999987
No 294
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.92 E-value=2.8 Score=48.75 Aligned_cols=144 Identities=17% Similarity=0.153 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAE----GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH----AGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 999 ~~l~~lG~~~~~~----G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~----~G~~~eAi~~~~kAL~i~ 1070 (1403)
...+.++..|... .+..+|..+|..+.+. ....+.+.||.+|.. ..++.+|..+|++|...
T Consensus 74 ~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~- 142 (292)
T COG0790 74 AALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKL- 142 (292)
T ss_pred HHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-
Confidence 5666677777643 3577888888854432 345677889999987 45999999999999875
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCC-------CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----cCC
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLN-------QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD----IGK 1139 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G-------~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~----~g~ 1139 (1403)
| ++.-..+..+||.+|..-. +...|+.+|.++-... ...+..+||.+|.. ..+
T Consensus 143 ----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~----------~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 143 ----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG----------NPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred ----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc----------CHHHHHHHHHHHHcCCCCCcC
Confidence 1 2222445778888887642 2336777777776542 34568889988865 358
Q ss_pred HHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC
Q 000589 1140 MDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG 1180 (1403)
Q Consensus 1140 ~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G 1180 (1403)
+.+|..+|.+|.+.- + ....+.++ ++...|
T Consensus 207 ~~~A~~wy~~Aa~~g-------~---~~a~~~~~-~~~~~g 236 (292)
T COG0790 207 LKKAFRWYKKAAEQG-------D---GAACYNLG-LMYLNG 236 (292)
T ss_pred HHHHHHHHHHHHHCC-------C---HHHHHHHH-HHHhcC
Confidence 999999999998742 1 55677788 666555
No 295
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=93.77 E-value=12 Score=45.19 Aligned_cols=187 Identities=14% Similarity=0.000 Sum_probs=129.7
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1033 GPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1033 g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
|.+-..-.+.....|.++....++..|..+++++.-.... +......+.++..++.++.+.+..-.++.+.-+++...
T Consensus 266 g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVLL~~ae~~~~g~~a~l~lplaL~~~~~~ 343 (482)
T KOG4322|consen 266 GGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVLLTIAEARESGDTACLNLPLALMFEFKR 343 (482)
T ss_pred cchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHHHHhcCCCchhhHHHHHHHHHHH
Confidence 3344445566667899999999999999999887654322 22334456677788888888888888888888888776
Q ss_pred HhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH-----HHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1113 SLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ-----TAVCYHALAIAFNCMGAFKLSHQ 1187 (1403)
Q Consensus 1113 ~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~-----~a~~~~~LA~~y~~~Gd~~eAi~ 1187 (1403)
... ..+...+..-.++|..+..+|-.+.|+..+..|+....-..|-+... .+.++..-+..+ ...+++.+..
T Consensus 344 sey--~ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~drara~fvfanC~lA~a~s~-~~e~ld~~~~ 420 (482)
T KOG4322|consen 344 SEY--SLDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDRARAIFVFANCTLAFALSC-ANESLDGFPR 420 (482)
T ss_pred HHh--ccchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhcceeEEEEEeeeecchhhh-hhhhHHhhHH
Confidence 553 22334456667889999999999999999999998764332221110 111221222222 4567888999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHH
Q 000589 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQ 1232 (1403)
Q Consensus 1188 ~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~e 1232 (1403)
++++|-+++.+. ..|....++.+.++..| ...|+.++
T Consensus 421 ~L~~A~~~f~kL--~~he~ildv~yf~A~~y------n~lGd~~e 457 (482)
T KOG4322|consen 421 YLDLAQSIFYKL--GCHEKILDVTYFSAYQY------NHLGDSPE 457 (482)
T ss_pred HHHHHHHHHHHc--cchHHHHHHHHHHHHHH------HhhcCchH
Confidence 999999998876 45778888888888877 77777654
No 296
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.64 E-value=0.34 Score=51.67 Aligned_cols=91 Identities=13% Similarity=0.085 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1014 LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM---AGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~---~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
|+.|.+.++..+.. +|..+..+++-|.++..+.++ .++..+++.|+.-++..+.. +|....+++++|.
T Consensus 7 FE~ark~aea~y~~--------nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGn 77 (186)
T PF06552_consen 7 FEHARKKAEAAYAK--------NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGN 77 (186)
T ss_dssp HHHHHHHHHHHHHH---------TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHHh--------CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHH
Confidence 44555555554444 455566777777766665444 44666666666655554433 4778889999999
Q ss_pred HHHHCC----CHHHHHHHHHHHHHHHH
Q 000589 1091 FYHGLN----QTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1091 ~~~~~G----~~~eAl~~l~rAL~l~~ 1113 (1403)
+|..++ +..+|..+|++|...++
T Consensus 78 A~ts~A~l~~d~~~A~~~F~kA~~~Fq 104 (186)
T PF06552_consen 78 AYTSLAFLTPDTAEAEEYFEKATEYFQ 104 (186)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcCChHHHHHHHHHHHHHHH
Confidence 987654 44566666666665544
No 297
>KOG1463 consensus 26S proteasome regulatory complex, subunit RPN6/PSMD11 [Posttranslational modification, protein turnover, chaperones]
Probab=93.60 E-value=7.2 Score=45.51 Aligned_cols=223 Identities=14% Similarity=0.046 Sum_probs=135.8
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 000589 1012 GLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALF 1091 (1403)
Q Consensus 1012 G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~ 1091 (1403)
+....-+.++.++++...+-. ..-..-..-..|..+|+..++|.+|+.+....+.-..+. .|.+.....+..=+..
T Consensus 102 ~~~~~~i~l~~~cIeWA~~ek--RtFLRq~Learli~Ly~d~~~YteAlaL~~~L~rElKKl--DDK~lLvev~llESK~ 177 (411)
T KOG1463|consen 102 DGTGDQIELCTECIEWAKREK--RTFLRQSLEARLIRLYNDTKRYTEALALINDLLRELKKL--DDKILLVEVHLLESKA 177 (411)
T ss_pred CCcchHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhc--ccccceeeehhhhhHH
Confidence 345566777777777654310 001112233568889999999999999999988877765 4555666666667788
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHH--
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPD-VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVC-- 1168 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~-~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~-- 1168 (1403)
|+...+..+|...+.-|.-....++-+ |. .+..-..=|..+..-.+|..|-.||-+|.+-+.... ++.....+
T Consensus 178 y~~l~Nl~KakasLTsART~AnaiYcp--PqlQa~lDLqSGIlha~ekDykTafSYFyEAfEgf~s~~--~~v~A~~sLK 253 (411)
T KOG1463|consen 178 YHALRNLPKAKASLTSARTTANAIYCP--PQLQATLDLQSGILHAAEKDYKTAFSYFYEAFEGFDSLD--DDVKALTSLK 253 (411)
T ss_pred HHHHhcchhHHHHHHHHHHhhcccccC--HHHHHHHHHhccceeecccccchHHHHHHHHHccccccC--CcHHHHHHHH
Confidence 888999999999888888777666554 33 334444456777777999999999999998765432 22233333
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhh
Q 000589 1169 YHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKA 1248 (1403)
Q Consensus 1169 ~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~ 1248 (1403)
|..|..+....-+--.++-.-+.+++ .-| ....++..++..+.. ....+|..|+.-|. .-+..
T Consensus 254 YMlLcKIMln~~ddv~~lls~K~~l~----y~g----~~i~AmkavAeA~~n----RSLkdF~~AL~~yk-----~eL~~ 316 (411)
T KOG1463|consen 254 YMLLCKIMLNLPDDVAALLSAKLALK----YAG----RDIDAMKAVAEAFGN----RSLKDFEKALADYK-----KELAE 316 (411)
T ss_pred HHHHHHHHhcCHHHHHHHHhhHHHHh----ccC----cchHHHHHHHHHhcC----CcHHHHHHHHHHhH-----HHHhc
Confidence 44455554433332233333333333 112 223445555554422 45667777877776 33444
Q ss_pred ChHHHHHHHHH
Q 000589 1249 HPDLIHAFQAV 1259 (1403)
Q Consensus 1249 ~p~~~~a~~~L 1259 (1403)
.|-...-+..|
T Consensus 317 D~ivr~Hl~~L 327 (411)
T KOG1463|consen 317 DPIVRSHLQSL 327 (411)
T ss_pred ChHHHHHHHHH
Confidence 45444433333
No 298
>PF00789 UBX: UBX domain; InterPro: IPR001012 The UBX domain is found in ubiquitin-regulatory proteins, which are members of the ubiquitination pathway, as well as a number of other proteins including FAF-1 (FAS-associated factor 1), the human Rep-8 reproduction protein and several hypothetical proteins from yeast. The function of the UBX domain is not known although the fragment of avian FAF-1 containing the UBX domain causes apoptosis of transfected cells.; GO: 0005515 protein binding; PDB: 3QX1_A 1H8C_A 3QCA_B 3QQ8_B 3QC8_B 3R3M_A 3QWZ_B 1S3S_H 1JRU_A 1I42_A ....
Probab=93.47 E-value=0.2 Score=46.79 Aligned_cols=74 Identities=15% Similarity=0.244 Sum_probs=52.8
Q ss_pred ccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccccccc--ccccccccCCCccEEE
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYN--EISEVADITTGGCTLE 159 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~--e~~~~~~~~~~~~~l~ 159 (1403)
....|.|++|+|..+...+.++++|++|++++........-.+|.|...-+ + ..|.+.. .|.++ |+.. .++|.
T Consensus 5 ~~~~I~vRlpdG~~l~~~F~~~~tl~~l~~~v~~~~~~~~~~~f~L~~~~P--r-~~l~~~~~~tl~e~-~l~p-~~~l~ 79 (82)
T PF00789_consen 5 DVVRIQVRLPDGSRLQRRFPKSDTLQDLYDFVESQLFSPEESDFELITAFP--R-RELTDEDSKTLEEA-GLLP-SATLI 79 (82)
T ss_dssp SEEEEEEEETTSTEEEEEEETTSBHHHHHHHHHHHHHCTTTSSEEEEESSS--T-EECCSTTTSBTCCC-TTSS-CEEEE
T ss_pred CEEEEEEECCCCCEEEEEECCcchHHHHHHHHHHhcCCCCCccEEEEeCCC--C-cCCCccccccHHHh-cCCC-CeEEE
Confidence 456899999999999999999999999999997665444333588864432 1 4555544 66666 5655 55555
Q ss_pred E
Q 000589 160 M 160 (1403)
Q Consensus 160 ~ 160 (1403)
|
T Consensus 80 v 80 (82)
T PF00789_consen 80 V 80 (82)
T ss_dssp E
T ss_pred E
Confidence 4
No 299
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.35 E-value=0.16 Score=38.42 Aligned_cols=30 Identities=30% Similarity=0.399 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+.+++.+|.+|+.+|++++|+.++++++.+
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l 30 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 467899999999999999999999999987
No 300
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=93.31 E-value=3.2 Score=49.88 Aligned_cols=130 Identities=15% Similarity=0.131 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy 1134 (1403)
.+..|.....+++...++.++...-.......+|=..|....+|+.-+.+.+..-.+- ..+-+....+....|.++
T Consensus 114 ~~~g~~~~l~~~L~~i~~rLd~~~~ls~div~~lllSyRdiqdydamI~Lve~l~~~p----~~~~~~~~~i~~~yafAL 189 (374)
T PF13281_consen 114 RYSGARKELAKELRRIRQRLDDPELLSPDIVINLLLSYRDIQDYDAMIKLVETLEALP----TCDVANQHNIKFQYAFAL 189 (374)
T ss_pred HHhhHHHHHHHHHHHHHHhhCCHhhcChhHHHHHHHHhhhhhhHHHHHHHHHHhhccC----ccchhcchHHHHHHHHHH
Confidence 3344455555555555554443222334556677778999999998888877654431 111233444567778888
Q ss_pred HH---cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHH
Q 000589 1135 QD---IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM---------GAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1135 ~~---~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~---------Gd~~eAi~~lkkAl~i 1195 (1403)
.+ .|+.++|+..+..++.-. ......++..+|.+|..+ ...++|+.+|+++.++
T Consensus 190 nRrn~~gdre~Al~il~~~l~~~-------~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~ 255 (374)
T PF13281_consen 190 NRRNKPGDREKALQILLPVLESD-------ENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI 255 (374)
T ss_pred hhcccCCCHHHHHHHHHHHHhcc-------CCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC
Confidence 88 899999999999876532 223345677777777543 2356777777777665
No 301
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=93.30 E-value=0.6 Score=54.38 Aligned_cols=133 Identities=14% Similarity=0.138 Sum_probs=89.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG-LNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~-~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
|..+.....+.+..+.|...|.+|+. +.......|...|.+.+. .++.+.|...|++++..+ +.++
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~--------~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f-----~~~~ 70 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARK--------DKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF-----PSDP 70 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHC--------CCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH-----TT-H
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHc--------CCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC-----CCCH
Confidence 33444555555568888888888853 123455678888999777 567777999999999875 2233
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
..+......+...++.+.|..+|++++... ........+|......-...|+.+.....++++.+.+
T Consensus 71 ---~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 71 ---DFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp ---HHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred ---HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 345555577889999999999999998753 1111134566677777777888888888887777654
No 302
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=93.21 E-value=0.16 Score=41.38 Aligned_cols=42 Identities=19% Similarity=0.210 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.++..+|.+|..+|++++|+..|++++.. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 46788999999999999999999999997 3555667776664
No 303
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.20 E-value=0.18 Score=38.06 Aligned_cols=31 Identities=23% Similarity=0.546 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+++.+|.++..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578999999999999999999999999875
No 304
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=93.13 E-value=0.79 Score=49.01 Aligned_cols=79 Identities=14% Similarity=0.155 Sum_probs=51.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCH---HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC----CHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKM---DTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG----AFKLSHQHEKKT 1192 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~---deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G----d~~eAi~~lkkA 1192 (1403)
+|..+..+++-|.++..+.++ .++..++++|+.-++..+.- .|....++.++|.+|..++ +..+|..+|++|
T Consensus 21 nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I-~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA 99 (186)
T PF06552_consen 21 NPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKI-NPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKA 99 (186)
T ss_dssp -TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHH
T ss_pred CcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhc-CCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHH
Confidence 466788888999888877554 44656666655554443211 2666778999999998765 456778888888
Q ss_pred HHHHHHH
Q 000589 1193 YDILVKQ 1199 (1403)
Q Consensus 1193 l~i~~~~ 1199 (1403)
...|++.
T Consensus 100 ~~~FqkA 106 (186)
T PF06552_consen 100 TEYFQKA 106 (186)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 7777654
No 305
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=93.05 E-value=11 Score=43.97 Aligned_cols=163 Identities=15% Similarity=0.058 Sum_probs=109.7
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA----GDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1009 ~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~----G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
...+++..|...+..+-.. ........++.+|..- .+..+|..+|+.+... ....+
T Consensus 52 ~~~~~~~~a~~~~~~a~~~----------~~~~a~~~l~~~y~~g~gv~~~~~~A~~~~~~~a~~----------g~~~a 111 (292)
T COG0790 52 AYPPDYAKALKSYEKAAEL----------GDAAALALLGQMYGAGKGVSRDKTKAADWYRCAAAD----------GLAEA 111 (292)
T ss_pred cccccHHHHHHHHHHhhhc----------CChHHHHHHHHHHHhccCccccHHHHHHHHHHHhhc----------ccHHH
Confidence 3556777777777776552 1115667777777653 4678899988855432 33457
Q ss_pred HHHHHHHHHH----CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcC-------CHHHHHHHHHHHHHH
Q 000589 1085 YGNMALFYHG----LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIG-------KMDTALRYLQEALKK 1153 (1403)
Q Consensus 1085 ~~nLA~~~~~----~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g-------~~deAl~~lekAL~l 1153 (1403)
.++||.+|.. ..++.+|..+|++|... | ++.-..+.+++|.+|..-. +...|+.+|.+|...
T Consensus 112 ~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~-----g--~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~ 184 (292)
T COG0790 112 LFNLGLMYANGRGVPLDLVKALKYYEKAAKL-----G--NVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAEL 184 (292)
T ss_pred HHhHHHHHhcCCCcccCHHHHHHHHHHHHHc-----C--ChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHh
Confidence 7889999887 45999999999999864 2 2222455778888877642 223677777777654
Q ss_pred HHHHhCCCcHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Q 000589 1154 NERLLGEEHIQTAVCYHALAIAFNC----MGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFK 1218 (1403)
Q Consensus 1154 ~~~~~G~~~~~~a~~~~~LA~~y~~----~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~ 1218 (1403)
. ...+...||.+|.. ..++.+|..+|++|-+. .+ ..+..+++.++
T Consensus 185 ~----------~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~-------g~---~~a~~~~~~~~ 233 (292)
T COG0790 185 G----------NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQ-------GD---GAACYNLGLMY 233 (292)
T ss_pred c----------CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC-------CC---HHHHHHHHHHH
Confidence 2 44567888888765 34889999999998763 22 55566676443
No 306
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=93.05 E-value=1.9 Score=55.10 Aligned_cols=149 Identities=9% Similarity=0.050 Sum_probs=104.9
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL-----NQTELALRHMSRALLLLSLSSGPDHPDVAATFIN 1129 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~-----G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~n 1129 (1403)
+...|..+++.+... ..+.+...+|.+|..- .+.+.|+.+|+.+..-++... +.....+.+.
T Consensus 227 ~~~~a~~~~~~~a~~----------g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a---~~~~~~a~~~ 293 (552)
T KOG1550|consen 227 ELSEAFKYYREAAKL----------GHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAA---TKGLPPAQYG 293 (552)
T ss_pred hhhHHHHHHHHHHhh----------cchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHH---hhcCCccccH
Confidence 456788888887664 3456677888888754 689999999999987311110 0112335788
Q ss_pred HHHHHHHcC-----CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHHHHHHhC
Q 000589 1130 VAMMYQDIG-----KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMG---AFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1130 LA~iy~~~g-----~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~G---d~~eAi~~lkkAl~i~~~~lg 1201 (1403)
+|.+|.... ++..|+.+|.+|-+. ....+.+.||.+|.... ++..|.++|..|...
T Consensus 294 lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~----------g~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~------ 357 (552)
T KOG1550|consen 294 LGRLYLQGLGVEKIDYEKALKLYTKAAEL----------GNPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKA------ 357 (552)
T ss_pred HHHHHhcCCCCccccHHHHHHHHHHHHhc----------CCchHHHHHHHHHHcCCccccHHHHHHHHHHHHHc------
Confidence 999998843 678899999988763 23456778898888765 678999999988753
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1202 EEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1202 ~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
....+..+++.+|..| .....+...|..++.
T Consensus 358 ----G~~~A~~~la~~y~~G--~gv~r~~~~A~~~~k 388 (552)
T KOG1550|consen 358 ----GHILAIYRLALCYELG--LGVERNLELAFAYYK 388 (552)
T ss_pred ----CChHHHHHHHHHHHhC--CCcCCCHHHHHHHHH
Confidence 2346778888887554 345567777888777
No 307
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=92.93 E-value=0.13 Score=62.07 Aligned_cols=98 Identities=18% Similarity=0.229 Sum_probs=87.7
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
|..+-..+..++..+.|+.|+.+|.+|+++ +|..+..+.+.+..+...++|..|+.-+.+|+++
T Consensus 4 a~e~k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~-------- 67 (476)
T KOG0376|consen 4 AEELKNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL-------- 67 (476)
T ss_pred hhhhhhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------
Confidence 444555677788889999999999999998 7888889999999999999999999999999987
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.|..+.+|..-|.++...+++.+|+..|+....+
T Consensus 68 dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l 101 (476)
T KOG0376|consen 68 DPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKL 101 (476)
T ss_pred CchhhheeeeccHHHHhHHHHHHHHHHHHHhhhc
Confidence 4889999999999999999999999999888765
No 308
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.72 E-value=0.093 Score=40.46 Aligned_cols=34 Identities=26% Similarity=0.430 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHH
Q 000589 1062 QQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALR 1103 (1403)
Q Consensus 1062 ~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~ 1103 (1403)
+|++||++ +|....+|++||.+|...|++++|++
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 36788887 58889999999999999999999963
No 309
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=92.71 E-value=5.7 Score=47.98 Aligned_cols=151 Identities=15% Similarity=0.032 Sum_probs=107.5
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---------------------CChhHHHHHHHHHHHHHH
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL---------------------DHPDTAHSYGNMALFYHG 1094 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~---------------------d~p~~~~a~~nLA~~~~~ 1094 (1403)
+|....++..++.++..+|+++.|.++.++|+-.+++.+.. .+.....++......+.+
T Consensus 36 ~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i~~L~~ 115 (360)
T PF04910_consen 36 NPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYIQSLGR 115 (360)
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHHHHHHh
Confidence 67778899999999999999999999999999998865321 222344566667777889
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Q 000589 1095 LNQTELALRHMSRALLLLSLSSGPD-HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALA 1173 (1403)
Q Consensus 1095 ~G~~~eAl~~l~rAL~l~~~~~g~d-~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA 1173 (1403)
.|-+..|+++.+-.+.+ .+. +|. .++..|-....+.++|+-=+++++.......+. .........+.+|
T Consensus 116 RG~~rTAlE~~KlLlsL-----dp~~DP~--g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~---~~~~lPn~a~S~a 185 (360)
T PF04910_consen 116 RGCWRTALEWCKLLLSL-----DPDEDPL--GVLLFIDYYALRSRQYQWLIDFSESPLAKCYRN---WLSLLPNFAFSIA 185 (360)
T ss_pred cCcHHHHHHHHHHHHhc-----CCCCCcc--hhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhh---hhhhCccHHHHHH
Confidence 99999999998877654 232 443 345556666677788877777776655421110 0011234567778
Q ss_pred HHHHHcCCH---------------HHHHHHHHHHHHHH
Q 000589 1174 IAFNCMGAF---------------KLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1174 ~~y~~~Gd~---------------~eAi~~lkkAl~i~ 1196 (1403)
.++...++- +.|...+++|+..+
T Consensus 186 LA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 186 LAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred HHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 888888887 89999999998764
No 310
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=92.65 E-value=0.2 Score=40.78 Aligned_cols=42 Identities=19% Similarity=0.223 Sum_probs=34.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAM 1048 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~ 1048 (1403)
..++.+|..|...|++++|+.+|+++++. +|+...++..||.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~--------~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALAL--------DPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--------CcCCHHHHHHhhh
Confidence 45788999999999999999999999998 4555566666664
No 311
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=92.54 E-value=0.086 Score=40.63 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHH
Q 000589 1020 LFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAI 1060 (1403)
Q Consensus 1020 ~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi 1060 (1403)
+|++|+++ +|....+|++||.+|...|++++|+
T Consensus 1 ~y~kAie~--------~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIEL--------NPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHH--------CCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 36788887 7888899999999999999999996
No 312
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.28 E-value=0.3 Score=36.98 Aligned_cols=30 Identities=30% Similarity=0.708 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.+++.+|.+|..+|++++|+.+|++++++.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 578999999999999999999999999976
No 313
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=92.05 E-value=0.3 Score=37.05 Aligned_cols=31 Identities=26% Similarity=0.263 Sum_probs=28.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 1040 ANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 1040 a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
+.++..+|.+|..+|++++|+.+|++++++.
T Consensus 1 a~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 1 AEAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp -HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4678999999999999999999999999985
No 314
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=91.99 E-value=6.7 Score=47.41 Aligned_cols=160 Identities=16% Similarity=0.095 Sum_probs=110.4
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---------------------CCHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP---------------------MHREVAN 1041 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~---------------------~~p~~a~ 1041 (1403)
.+..++ +..|.+ ..+|+.++.++..+|++..|.+++++||-.++....+ .+.....
T Consensus 28 ~l~~ll-~~~PyH--idtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~ffl 104 (360)
T PF04910_consen 28 ALINLL-QKNPYH--IDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFL 104 (360)
T ss_pred HHHHHH-HHCCCc--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHH
Confidence 344444 233444 6789999999999999999999999999887754211 2334456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1042 CCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1042 a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
++......+.+.|-+..|.++++-.+.+- ++ .+-..++..+=.+..+.++|+=-+.+++........ ....
T Consensus 105 al~r~i~~L~~RG~~rTAlE~~KlLlsLd-----p~-~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~---~~~~ 175 (360)
T PF04910_consen 105 ALFRYIQSLGRRGCWRTALEWCKLLLSLD-----PD-EDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYR---NWLS 175 (360)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhcC-----CC-CCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhh---hhhh
Confidence 66777788889999999999998877762 22 123445556666677888888777777765442100 0000
Q ss_pred HHHHHHHHHHHHHHHcCCH---------------HHHHHHHHHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKM---------------DTALRYLQEALKKN 1154 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~---------------deAl~~lekAL~l~ 1154 (1403)
......+.+|.++...++- +.|...+++|+...
T Consensus 176 ~lPn~a~S~aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~f 223 (360)
T PF04910_consen 176 LLPNFAFSIALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRF 223 (360)
T ss_pred hCccHHHHHHHHHHHhcCccccccccccccccchhHHHHHHHHHHHHh
Confidence 1224567788888888888 89999999999866
No 315
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=91.88 E-value=1 Score=52.40 Aligned_cols=133 Identities=15% Similarity=0.089 Sum_probs=89.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH-AGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~-~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
|....+.....+..+.|..+|.+|+.. ......+|...|.+.+. .++.+.|...|+.++..+ +
T Consensus 4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~--------~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f--------~ 67 (280)
T PF05843_consen 4 WIQYMRFMRRTEGIEAARKVFKRARKD--------KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKF--------P 67 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCC--------CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHH--------T
T ss_pred HHHHHHHHHHhCChHHHHHHHHHHHcC--------CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC--------C
Confidence 444556666666689999999998632 12234567788888666 566666999999999876 2
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
.....+.....++...++.+.|..+|++++... ......-.+|......-...|+++....+.+++.++.
T Consensus 68 ~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l-----~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~ 137 (280)
T PF05843_consen 68 SDPDFWLEYLDFLIKLNDINNARALFERAISSL-----PKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELF 137 (280)
T ss_dssp T-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTS-----SCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-----CchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 333444555577889999999999999998642 1112134456666666677788888888888777754
No 316
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=91.84 E-value=3.7 Score=43.82 Aligned_cols=164 Identities=23% Similarity=0.271 Sum_probs=105.9
Q ss_pred HHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHHH
Q 000589 954 NLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLA-----EGLLSEAYTLFSEAFSIL 1028 (1403)
Q Consensus 954 ~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~-----~G~~eeA~~~l~eAL~l~ 1028 (1403)
+-|+.+|.++..-.-+| .....|+|..-.....+...+..|..++. .+++..|++.+..+...
T Consensus 35 e~C~lLgdYlEgi~knF-----------~~A~kv~K~nCden~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~- 102 (248)
T KOG4014|consen 35 ESCQLLGDYLEGIQKNF-----------QAAVKVFKKNCDENSYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA- 102 (248)
T ss_pred hHHHHHHHHHHHHHHHH-----------HHHHHHHHhcccccCCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc-
Confidence 34666776665554444 34456677766666677778888877663 45788888888887663
Q ss_pred HHhcCCCCHHHHHHHHHHHHHHHhc-----CC--HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-------
Q 000589 1029 QQVTGPMHREVANCCRYLAMVLYHA-----GD--MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG------- 1094 (1403)
Q Consensus 1029 ~~i~g~~~p~~a~a~~~LA~iy~~~-----G~--~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~------- 1094 (1403)
....+..++|.++..- ++ ..+|++|+.+|..+ ....+.++|+..|..
T Consensus 103 ---------n~~~aC~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t 163 (248)
T KOG4014|consen 103 ---------NIPQACRYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKT 163 (248)
T ss_pred ---------CCHHHHhhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcc
Confidence 2345667777776543 23 67888888888765 122344445444433
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHH
Q 000589 1095 -----------------LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD----IGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1095 -----------------~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~----~g~~deAl~~lekAL~l 1153 (1403)
..+.+.|..+..+|-++ ++ .++..|+..+|.. -.+-++|..+-.+|.++
T Consensus 164 ~ap~~g~p~~~~~~~~~~kDMdka~qfa~kACel-------~~---~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~ 233 (248)
T KOG4014|consen 164 NAPGEGKPLDRAELGSLSKDMDKALQFAIKACEL-------DI---PQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEI 233 (248)
T ss_pred cCCCCCCCcchhhhhhhhHhHHHHHHHHHHHHhc-------CC---hHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHH
Confidence 24556666666666543 23 4456778887754 24688999999999998
Q ss_pred HHHHh
Q 000589 1154 NERLL 1158 (1403)
Q Consensus 1154 ~~~~~ 1158 (1403)
.+.+.
T Consensus 234 ~~e~~ 238 (248)
T KOG4014|consen 234 MEELR 238 (248)
T ss_pred HHHHH
Confidence 87653
No 317
>TIGR00601 rad23 UV excision repair protein Rad23. All proteins in this family for which functions are known are components of a multiprotein complex used for targeting nucleotide excision repair to specific parts of the genome. In humans, Rad23 complexes with the XPC protein. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.79 E-value=0.31 Score=58.61 Aligned_cols=75 Identities=17% Similarity=0.279 Sum_probs=62.1
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCc--ceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPE--TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~--t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+.|+||+..+..++|.|.++++|.||++.|..... .|.-....|.|.| +.|+|-..|+++ +|++++.++-||
T Consensus 1 MkItVKtl~g~~~~IeV~~~~TV~dLK~kI~~~~g~~~ip~~~QkLIy~G-----kiL~Dd~tL~dy-~I~e~~~Ivvmv 74 (378)
T TIGR00601 1 MTLTFKTLQQQKFKIDMEPDETVKELKEKIEAEQGKDAYPVAQQKLIYSG-----KILSDDKTVREY-KIKEKDFVVVMV 74 (378)
T ss_pred CEEEEEeCCCCEEEEEeCCcChHHHHHHHHHHhhCCCCCChhHeEEEECC-----EECCCCCcHHHc-CCCCCCEEEEEe
Confidence 46999999999999999999999999999988764 3777889999999 889999888886 788755555555
Q ss_pred ecC
Q 000589 162 AAL 164 (1403)
Q Consensus 162 ~~~ 164 (1403)
-.+
T Consensus 75 ~k~ 77 (378)
T TIGR00601 75 SKP 77 (378)
T ss_pred ccC
Confidence 443
No 318
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=91.34 E-value=37 Score=40.81 Aligned_cols=145 Identities=15% Similarity=0.069 Sum_probs=103.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHh-cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQV-TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i-~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
....++.+.++++|..+-...+.-..-. .-..+--.+.+|+.+..+|-..|+...-..++..-+.. ..++.|....+
T Consensus 132 v~Lfl~d~K~~kea~~~~~~~l~~i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrt--AtLrhd~e~qa 209 (493)
T KOG2581|consen 132 VLLFLIDQKEYKEADKISDALLASISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRT--ATLRHDEEGQA 209 (493)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHH--hhhcCcchhHH
Confidence 3444556788999888777665432110 00112345778899999999999977776666665554 34566666667
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
...+.|=..|...+.|+.|..+..++..-- ...+...+..++.+|.+..-+++|..|.+++-+|++..
T Consensus 210 vLiN~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 210 VLINLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 777778888999999999988877654210 01234778889999999999999999999999999865
No 319
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=90.83 E-value=4.2 Score=44.47 Aligned_cols=141 Identities=13% Similarity=0.138 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCC
Q 000589 1017 AYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLN 1096 (1403)
Q Consensus 1017 A~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G 1096 (1403)
+++-|.+++++..++-...+++.-.- ++..-+..++..-++.+.+.+..+|. +..+++...
T Consensus 60 ~le~Y~kCielAa~Iq~i~~~e~k~~------------R~~a~~~s~~~l~~L~~~tk~S~dP~-------llYy~Wsr~ 120 (203)
T PF11207_consen 60 ALEKYSKCIELAAQIQHIKQKERKTD------------RFRALLHSYQELERLQEETKNSQDPY-------LLYYHWSRF 120 (203)
T ss_pred HHHHHHHHHHHHhcCeeechHhHHHH------------HHHHHHHHHHHHHHHHHHHccCCCcc-------HHHHHhhcc
Confidence 55566777777665544444332111 11222222333334444555566674 344455554
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHH
Q 000589 1097 QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAF 1176 (1403)
Q Consensus 1097 ~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y 1176 (1403)
.-++|+.-|.++- |....+.+...+.||..|. ..+.++|+.+|.++|++... +......++..||.+|
T Consensus 121 ~d~~A~~~fL~~E-------~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~----~~~~n~eil~sLas~~ 188 (203)
T PF11207_consen 121 GDQEALRRFLQLE-------GTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNP----DDNFNPEILKSLASIY 188 (203)
T ss_pred CcHHHHHHHHHHc-------CCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCC----CCCCCHHHHHHHHHHH
Confidence 4466776665543 3333455677888888776 67889999999999998743 3234467788999999
Q ss_pred HHcCCHHHHHHH
Q 000589 1177 NCMGAFKLSHQH 1188 (1403)
Q Consensus 1177 ~~~Gd~~eAi~~ 1188 (1403)
..+|+++.|.-+
T Consensus 189 ~~~~~~e~AYiw 200 (203)
T PF11207_consen 189 QKLKNYEQAYIW 200 (203)
T ss_pred HHhcchhhhhhh
Confidence 999999988643
No 320
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=90.75 E-value=0.18 Score=58.30 Aligned_cols=95 Identities=22% Similarity=0.170 Sum_probs=83.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
....+.-.+..|.++.|++.|..|+.+ +|..+..|...+.++..++....|+.-|..|+.+ +++
T Consensus 117 ~k~~A~eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~D 180 (377)
T KOG1308|consen 117 KKVQASEALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPD 180 (377)
T ss_pred HHHHHHHHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccc
Confidence 333456667889999999999999988 7888999999999999999999999999999988 578
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.+..|-..+.....+|+|.+|..++..|..+
T Consensus 181 sa~~ykfrg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 181 SAKGYKFRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred cccccchhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888889999999999999999999998865
No 321
>PF11976 Rad60-SLD: Ubiquitin-2 like Rad60 SUMO-like; InterPro: IPR022617 This entry includes small ubiquitin-related modifier (SUMO) proteins. SUMOs are small proteins that are covalently attached to lysines as post-translational modifications and are used to control multiple cellular process including signal transduction, nuclear transport and DNA replication and repair []. Unlike ubiquitin, they are not involved in protein degradation. This entry also contains the C-terminal Rad60 DNA repair protein SUMO-like domain.; PDB: 3RD2_A 2JXX_A 3RCZ_A 3GOE_A 3A4S_D 3A4R_B 2IO1_D 1U4A_A 2K1F_A 1WZ0_A ....
Probab=90.69 E-value=0.3 Score=44.33 Aligned_cols=71 Identities=13% Similarity=0.288 Sum_probs=57.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
++|+|+.+++..+.+++.++++|..|.+..........-+.+.|.+.| .+|++...+.++ |+.+ +-.|.|+
T Consensus 1 I~i~v~~~~~~~~~~~v~~~~~~~~l~~~~~~~~~i~~~~~~~l~fdG-----~~L~~~~T~~~~-~ied-~d~Idv~ 71 (72)
T PF11976_consen 1 ITIKVRSQDGKEIKFKVKPTTTVSKLIEKYCEKKGIPPEESIRLIFDG-----KRLDPNDTPEDL-GIED-GDTIDVI 71 (72)
T ss_dssp EEEEEEETTSEEEEEEEETTSCCHHHHHHHHHHHTTTT-TTEEEEETT-----EEE-TTSCHHHH-T-ST-TEEEEEE
T ss_pred CEEEEEeCCCCEEEEEECCCCcHHHHHHHHHHhhCCCccceEEEEECC-----EEcCCCCCHHHC-CCCC-CCEEEEE
Confidence 368899999999999999999999999999887654433899999999 889999888887 6777 6667664
No 322
>smart00166 UBX Domain present in ubiquitin-regulatory proteins. Present in FAF1 and Shp1p.
Probab=90.58 E-value=0.88 Score=42.36 Aligned_cols=71 Identities=11% Similarity=0.141 Sum_probs=48.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccc---cccccccccCCCccEEEE
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDY---NEISEVADITTGGCTLEM 160 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~---~e~~~~~~~~~~~~~l~~ 160 (1403)
..|.|++|+|+.++-.+.++++|.||++++..... .-...|.|...-+ + +.+++. ..|.++ |+.. .++|-|
T Consensus 5 ~~I~iRlPdG~ri~~~F~~~~tl~~v~~~v~~~~~-~~~~~f~L~t~~P--r-k~l~~~d~~~tL~e~-gL~p-~~~l~v 78 (80)
T smart00166 5 CRLQIRLPDGSRLVRRFPSSDTLRTVYEFVSAALT-DGNDPFTLNSPFP--R-RTFTKDDYSKTLLEL-ALLP-SSTLVL 78 (80)
T ss_pred EEEEEEcCCCCEEEEEeCCCCcHHHHHHHHHHccc-CCCCCEEEEeCCC--C-cCCccccccCCHHHC-CCCC-ceEEEE
Confidence 57899999999999999999999999999944332 2235687865432 1 455543 346665 5544 555544
No 323
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.23 E-value=36 Score=45.06 Aligned_cols=173 Identities=15% Similarity=0.077 Sum_probs=106.7
Q ss_pred chhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 994 ICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 994 ~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
+......|..+|...++.|...+|++.|-+| ++| ..|...-.+..+.|.|++-+.|+.-|-.-.+..
T Consensus 1100 ~~n~p~vWsqlakAQL~~~~v~dAieSyika----------dDp---s~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~ 1166 (1666)
T KOG0985|consen 1100 RCNEPAVWSQLAKAQLQGGLVKDAIESYIKA----------DDP---SNYLEVIDVASRTGKYEDLVKYLLMARKKVREP 1166 (1666)
T ss_pred hhCChHHHHHHHHHHHhcCchHHHHHHHHhc----------CCc---HHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCc
Confidence 3444567788999999999999999988775 222 346666677778888888888887765543221
Q ss_pred cCCCChhHHHHH---------------------HHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Q 000589 1074 LGLDHPDTAHSY---------------------GNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAM 1132 (1403)
Q Consensus 1074 lg~d~p~~~~a~---------------------~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~ 1132 (1403)
. -..+.+.+| ...|.-++..+.|+.|.-+|.. ..-+..||.
T Consensus 1167 ~--id~eLi~AyAkt~rl~elE~fi~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~----------------vSN~a~La~ 1228 (1666)
T KOG0985|consen 1167 Y--IDSELIFAYAKTNRLTELEEFIAGPNVANIQQVGDRCFEEKMYEAAKLLYSN----------------VSNFAKLAS 1228 (1666)
T ss_pred c--chHHHHHHHHHhchHHHHHHHhcCCCchhHHHHhHHHhhhhhhHHHHHHHHH----------------hhhHHHHHH
Confidence 0 001111111 1234444445555444333322 233677889
Q ss_pred HHHHcCCHHHHHHHHHHHHHH--HHH---------------HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1133 MYQDIGKMDTALRYLQEALKK--NER---------------LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1133 iy~~~g~~deAl~~lekAL~l--~~~---------------~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.+..+|+|+.|....++|-.. ++. ..|-+-.-.+.-+-.|...|...|-|++-+.+++.++-+
T Consensus 1229 TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGL 1308 (1666)
T KOG0985|consen 1229 TLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGL 1308 (1666)
T ss_pred HHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhch
Confidence 999999999999988877432 111 112111112334556778888889888888888877765
Q ss_pred HH
Q 000589 1196 LV 1197 (1403)
Q Consensus 1196 ~~ 1197 (1403)
-+
T Consensus 1309 ER 1310 (1666)
T KOG0985|consen 1309 ER 1310 (1666)
T ss_pred hH
Confidence 44
No 324
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=90.06 E-value=0.38 Score=58.20 Aligned_cols=95 Identities=19% Similarity=0.171 Sum_probs=83.4
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDV 1123 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~ 1123 (1403)
-+-|.-++.-+.|+.|+.+|.+||++ +|..+..+.+.+..+...++|..|+.-+.+|+++ .|..
T Consensus 8 k~ean~~l~~~~fd~avdlysKaI~l--------dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~--------dP~~ 71 (476)
T KOG0376|consen 8 KNEANEALKDKVFDVAVDLYSKAIEL--------DPNCAIYFANRALAHLKVESFGGALHDALKAIEL--------DPTY 71 (476)
T ss_pred hhHHhhhcccchHHHHHHHHHHHHhc--------CCcceeeechhhhhheeechhhhHHHHHHhhhhc--------Cchh
Confidence 34456677788999999999999998 5777888889999999999999999999999975 5889
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+.+|+.-|.++...+++.+|+..|+....+.
T Consensus 72 ~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~ 102 (476)
T KOG0376|consen 72 IKAYVRRGTAVMALGEFKKALLDLEKVKKLA 102 (476)
T ss_pred hheeeeccHHHHhHHHHHHHHHHHHHhhhcC
Confidence 9999999999999999999999998877654
No 325
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.95 E-value=4.3 Score=47.68 Aligned_cols=202 Identities=13% Similarity=0.068 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH-----------------
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA----------------- 1057 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~----------------- 1057 (1403)
...+..+...|+-.+.+++++.|...|.+|..++..+||..|.+...+++..|..++..+++.
T Consensus 38 ~~~~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL~nale~~~~eE~e 117 (400)
T KOG4563|consen 38 EKTLEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVLGNALETESAEEEE 117 (400)
T ss_pred HHHHHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchh
Confidence 344677888999999999999999999999999999999999999999999999988766554
Q ss_pred ---------------HHHHHHHHHHHHHHHhc------CC---CCh--h-------------------------------
Q 000589 1058 ---------------GAIMQQHKELIINERCL------GL---DHP--D------------------------------- 1080 (1403)
Q Consensus 1058 ---------------eAi~~~~kAL~i~er~l------g~---d~p--~------------------------------- 1080 (1403)
++..+|+.-+...+... +. ..+ +
T Consensus 118 ~~~s~e~s~e~nn~~e~vee~r~~~a~~~kekeEae~~ed~~~~e~e~dt~k~~wE~Le~sr~~~~~~~~s~~~~qe~k~ 197 (400)
T KOG4563|consen 118 VEKSGELSDEENNNKETVEEYRYGLALLEKEKEEAEKTEDKPAAEDEVDTMKLAWEELETSRVIADKKSESLEAEQEGKG 197 (400)
T ss_pred hccccccchhhhccHHHHHHHHhhhhhhhhhhhhcccccCCccccchhhhhhhhhhhhhhhccccchhhhcccccccccc
Confidence 33344444333322110 00 000 0
Q ss_pred -HHHHHH-HHHHHH-------HHCCCHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHH--
Q 000589 1081 -TAHSYG-NMALFY-------HGLNQTELALRHMSRALLLLSLSSGPDHP-DVAATFINVAMMYQDIGKMDTALRYLQ-- 1148 (1403)
Q Consensus 1081 -~~~a~~-nLA~~~-------~~~G~~~eAl~~l~rAL~l~~~~~g~d~p-~~a~~~~nLA~iy~~~g~~deAl~~le-- 1148 (1403)
.+..|. .++..+ ...|+|+.|+....+++.+.+..+..... .++..+.+++......-.+++...+|.
T Consensus 198 ~l~~~wdle~~~~l~~~~a~gias~k~eqal~d~ee~~sIs~~~l~~esrk~~a~~~~il~~~~~~s~~~Ee~~~~~~~~ 277 (400)
T KOG4563|consen 198 DLILGWDLELADVLKLLGAHGIASGKYEQALEDAEEALSISRVDLPEESRKEIAQTVDILCSAAESSLEREEIESSFSDT 277 (400)
T ss_pred chhhhhccccchhhhccCCccccccchhhhhHHHHHHhhhhhccccHHHHHHHhhhhhhccccccchhHHHHHHHHHHHh
Confidence 000110 111111 24678999999999999988766544333 344455555554444444444444433
Q ss_pred -HHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1149 -EALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1149 -kAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
.+|-..+...-++.......-+....+.....+.++++.++++++-..
T Consensus 278 KnvLi~~e~Ev~~~~~k~~d~~~~es~~~~~~~elee~ip~leq~i~d~ 326 (400)
T KOG4563|consen 278 KNVLIEREREVKDDLEKGVDDNFRESECLSELKELEEMIPELEQAILDA 326 (400)
T ss_pred hhHHHHHHHhhcccccccccccccchhHHHhhhhHHhHHHHHHHHHHHh
Confidence 333333322222222222222345566666677788888887776543
No 326
>cd01767 UBX UBX (ubiquitin regulatory X) domain. The UBX (ubiquitin regulatory X) domain has a beta-grasp fold that is structurally quite similar to ubiquitin although UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins. Most UBX-containing proteins including p47, FAF1, and SAKS1 (Y33K) also contain a UBA (ubiquitin-associated) domain and are thought to serve as adaptor molecules that shuttle proteins to the proteasome for degradation.
Probab=89.43 E-value=1.6 Score=40.31 Aligned_cols=45 Identities=16% Similarity=0.331 Sum_probs=37.3
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
..|.|++|+|+.++-.+.++++|+||++++...... -..|.|...
T Consensus 3 t~i~iRlpdG~~~~~~F~~~~tl~~l~~fv~~~~~~--~~~f~L~t~ 47 (77)
T cd01767 3 TKIQIRLPDGKRLEQRFNSTHKLSDVRDFVESNGPP--AEPFTLMTS 47 (77)
T ss_pred EEEEEEcCCCCEEEEEeCCCCCHHHHHHHHHHcCCC--CCCEEEEeC
Confidence 368999999999999999999999999999765422 566777754
No 327
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=89.34 E-value=11 Score=43.44 Aligned_cols=136 Identities=16% Similarity=0.077 Sum_probs=82.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA 1124 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a 1124 (1403)
.-+.-....|++.+|...+..++... ++...+...|+.+|...|+.+.|...+...=.-.. .+.....
T Consensus 139 ~~~~~~~~~e~~~~a~~~~~~al~~~--------~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~----~~~~~~l 206 (304)
T COG3118 139 AEAKELIEAEDFGEAAPLLKQALQAA--------PENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQ----DKAAHGL 206 (304)
T ss_pred HHhhhhhhccchhhHHHHHHHHHHhC--------cccchHHHHHHHHHHHcCChHHHHHHHHhCcccch----hhHHHHH
Confidence 34555678899999999999999873 45567788899999999999999887765211000 0000001
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEED 1204 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~ 1204 (1403)
.+...+..-....++..+.. +.+. ..|+...+.+.||..|...|+++.|.+++-. ++++..|.++
T Consensus 207 ~a~i~ll~qaa~~~~~~~l~----~~~a--------adPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~---~l~~d~~~~d 271 (304)
T COG3118 207 QAQIELLEQAAATPEIQDLQ----RRLA--------ADPDDVEAALALADQLHLVGRNEAALEHLLA---LLRRDRGFED 271 (304)
T ss_pred HHHHHHHHHHhcCCCHHHHH----HHHH--------hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH---HHHhcccccC
Confidence 11111111111222222111 1111 2355667888999999999999999988754 3444444444
Q ss_pred HHH
Q 000589 1205 SRT 1207 (1403)
Q Consensus 1205 ~~t 1207 (1403)
...
T Consensus 272 ~~~ 274 (304)
T COG3118 272 GEA 274 (304)
T ss_pred cHH
Confidence 333
No 328
>cd01770 p47_UBX p47-like ubiquitin domain. p47_UBX p47 is an adaptor molecule of the cytosolic AAA ATPase p97. The principal role of the p97-p47 complex is to regulate membrane fusion events. Mono-ubiquitin recognition by p47 is crucial for p97-p47-mediated Golgi membrane fusion events. p47 has carboxy-terminal SEP and UBX domains. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=89.18 E-value=1.5 Score=40.89 Aligned_cols=48 Identities=17% Similarity=0.336 Sum_probs=40.2
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
.-.|.|.+|+|+.++..++.+++|.||++++.......-...|.|...
T Consensus 4 ~t~iqiRlpdG~r~~~rF~~~~tv~~l~~~v~~~~~~~~~~~f~L~t~ 51 (79)
T cd01770 4 TTSIQIRLADGKRLVQKFNSSHRVSDVRDFIVNARPEFAARPFTLMTA 51 (79)
T ss_pred eeEEEEECCCCCEEEEEeCCCCcHHHHHHHHHHhCCCCCCCCEEEecC
Confidence 347899999999999999999999999999997654334578888754
No 329
>cd01800 SF3a120_C Ubiquitin-like domain of Mammalian splicing factor SF3a_120. SF3a120_C Mammalian splicing factor SF3a consists of three subunits of 60, 66, and 120 kDa and functions early during pre-mRNA splicing by converting the U2 snRNP to its active form. The 120kDa subunit (SF3a120) has a carboxy-terminal ubiquitin-like domain and two SWAP (suppressor-of-white-apricot) domains, referred to collectively as the SURP module, at its amino-terminus.
Probab=88.95 E-value=0.76 Score=42.34 Aligned_cols=64 Identities=13% Similarity=0.149 Sum_probs=54.3
Q ss_pred CceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEecC
Q 000589 93 NEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVAAL 164 (1403)
Q Consensus 93 ~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~~ 164 (1403)
+..++|.+.++++|.+|++.|..... +.-....|.|.| ..|+|-..|+++ ++.+ +++|.|+..+
T Consensus 7 g~~~~l~v~~~~TV~~lK~~i~~~~g-ip~~~q~L~~~G-----~~L~d~~tL~~~-~i~~-g~~l~v~~~~ 70 (76)
T cd01800 7 GQMLNFTLQLSDPVSVLKVKIHEETG-MPAGKQKLQYEG-----IFIKDSNSLAYY-NLAN-GTIIHLQLKE 70 (76)
T ss_pred CeEEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEECC-----EEcCCCCcHHHc-CCCC-CCEEEEEEec
Confidence 46788999999999999999988764 777889999998 789998888877 6888 8899888653
No 330
>KOG4322 consensus Anaphase-promoting complex (APC), subunit 5 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=88.77 E-value=33 Score=41.56 Aligned_cols=222 Identities=11% Similarity=0.012 Sum_probs=131.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 000589 1048 MVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATF 1127 (1403)
Q Consensus 1048 ~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~ 1127 (1403)
+.....+...+|-.+..+--.......|.|-..........|.++....++..|..++.+++-.+.. +........++
T Consensus 239 wml~d~~~v~~~~~~~~~~h~al~~~~g~d~~~svE~l~R~A~il~A~~q~s~A~~ll~kL~vqc~k--~~~~em~~sVL 316 (482)
T KOG4322|consen 239 WMLHDLLEVEENNLNTSYYHKALNSWFGGDYQQSVENLCRFAHILHADEQVSYAYALLNKLMVQCDK--GCNEEMLHSVL 316 (482)
T ss_pred HHHHHhHHHHHhhhhhhHHHHHHHHhhcchHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc--chhHHHHHHHH
Confidence 3334444444444333332223333456666667778888999999999999999999988755433 22334567778
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHH
Q 000589 1128 INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRT 1207 (1403)
Q Consensus 1128 ~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t 1207 (1403)
..++.++..-+.--.+..+.-.++..+.+.. .....+..-..||......|-.+.|+..+..|+....-.-|-++.
T Consensus 317 L~~ae~~~~g~~a~l~lplaL~~~~~~sey~--ldyl~a~~~L~LAl~~L~LG~pk~Al~lLh~a~h~Il~~GgL~dr-- 392 (482)
T KOG4322|consen 317 LTIAEARESGDTACLNLPLALMFEFKRSEYS--LDYLEANENLDLALEHLALGSPKAALPLLHTAVHLILVQGGLDDR-- 392 (482)
T ss_pred HHHHHHHhcCCCchhhHHHHHHHHHHHHHhc--cchhhhhchHHHHHHHHHcCChHHHHHHHHhhhhHHHhccchhhc--
Confidence 8888888888888888888888887776542 123344556678888999999999999999998765543332211
Q ss_pred HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHh---hChHHHHHHHHHH----HhCC---hHHHHHHHHHHHH
Q 000589 1208 KDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILK---AHPDLIHAFQAVA----AAGG---SGNSGASANNSLN 1277 (1403)
Q Consensus 1208 ~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~---~~p~~~~a~~~La----~~G~---~~eA~~~~ekAL~ 1277 (1403)
+.++...+.++.-...-....+++.+...++ +|-.++. -|.....+.+-++ ..|+ -+++...|++++.
T Consensus 393 ara~fvfanC~lA~a~s~~~e~ld~~~~~L~--~A~~~f~kL~~he~ildv~yf~A~~yn~lGd~~eRn~~AslFrk~~~ 470 (482)
T KOG4322|consen 393 ARAIFVFANCTLAFALSCANESLDGFPRYLD--LAQSIFYKLGCHEKILDVTYFSAYQYNHLGDSPERNLLASLFRKAWR 470 (482)
T ss_pred ceeEEEEEeeeecchhhhhhhhHHhhHHHHH--HHHHHHHHccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHH
Confidence 1111111111111111123344555555555 4444443 3444444444444 2233 4456666777665
No 331
>KOG0010 consensus Ubiquitin-like protein [Posttranslational modification, protein turnover, chaperones; General function prediction only]
Probab=88.38 E-value=0.71 Score=55.96 Aligned_cols=75 Identities=23% Similarity=0.294 Sum_probs=67.7
Q ss_pred ccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEE
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
..+.|+||+|.. +.+++|..+.+|.+++..++... .|+--...|.|.| .+|.|-.+|... ||++ |++++||
T Consensus 14 ~~irV~Vkt~~d-k~~~~V~~~ssV~qlKE~I~~~f-~a~~dqlvLIfaG-----rILKD~dTL~~~-gI~D-g~TvHLV 84 (493)
T KOG0010|consen 14 SLIRVTVKTPKD-KYEVNVASDSSVLQLKELIAQRF-GAPPDQLVLIYAG-----RILKDDDTLKQY-GIQD-GHTVHLV 84 (493)
T ss_pred ceeEEEEecCCc-ceeEecccchHHHHHHHHHHHhc-CCChhHeeeeecC-----ccccChhhHHHc-CCCC-CcEEEEE
Confidence 568899999988 99999999999999999999998 6888899999999 899999998876 8999 9999999
Q ss_pred ecCC
Q 000589 162 AALY 165 (1403)
Q Consensus 162 ~~~Y 165 (1403)
-+-.
T Consensus 85 ik~~ 88 (493)
T KOG0010|consen 85 IKSQ 88 (493)
T ss_pred eccC
Confidence 7644
No 332
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.31 E-value=59 Score=41.05 Aligned_cols=193 Identities=14% Similarity=0.067 Sum_probs=125.8
Q ss_pred CCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHh
Q 000589 1035 MHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSL 1114 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~ 1114 (1403)
..+.....+......-...|+++...-+|++++.-+ ...-..+.+.+......|+.+-|-..+.++..+.
T Consensus 292 l~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~-- 361 (577)
T KOG1258|consen 292 LDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACKIH-- 361 (577)
T ss_pred ccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhc--
Confidence 344445556666666778899999999999888764 2344567788888888899999998888888764
Q ss_pred hcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1115 SSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1115 ~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
++....+...-|.+....|++..|...|++...-+ |....+-..-+......|+.+.+.. +.+.+.
T Consensus 362 -----~k~~~~i~L~~a~f~e~~~n~~~A~~~lq~i~~e~--------pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s 427 (577)
T KOG1258|consen 362 -----VKKTPIIHLLEARFEESNGNFDDAKVILQRIESEY--------PGLVEVVLRKINWERRKGNLEDANY-KNELYS 427 (577)
T ss_pred -----CCCCcHHHHHHHHHHHhhccHHHHHHHHHHHHhhC--------CchhhhHHHHHhHHHHhcchhhhhH-HHHHHH
Confidence 23344445566777888999999999999877643 3444444455566677888887775 222222
Q ss_pred HHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH
Q 000589 1195 ILVKQLGEEDSRT-KDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA 1260 (1403)
Q Consensus 1195 i~~~~lg~~~~~t-~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La 1260 (1403)
... -|..+... ...+...+.+. ..-.++.+.|..++. ++++++...-.....+..+.
T Consensus 428 ~~~--~~~~~~~i~~~l~~~~~r~~-----~~i~~d~~~a~~~l~--~~~~~~~~~k~~~~~~~~~~ 485 (577)
T KOG1258|consen 428 SIY--EGKENNGILEKLYVKFARLR-----YKIREDADLARIILL--EANDILPDCKVLYLELIRFE 485 (577)
T ss_pred Hhc--ccccCcchhHHHHHHHHHHH-----HHHhcCHHHHHHHHH--HhhhcCCccHHHHHHHHHHH
Confidence 211 12233322 22233333332 256677788888887 77777766666666666665
No 333
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.30 E-value=22 Score=40.31 Aligned_cols=175 Identities=13% Similarity=0.098 Sum_probs=94.2
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG-LNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~-~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
+..+|.++.+.++|++++.+.++++... ..-+..-.+.|+.+|-. .|....+.+.+.....-.. +..++
T Consensus 4 li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~---~~~~~ 73 (236)
T PF00244_consen 4 LIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEE---NKGNE 73 (236)
T ss_dssp HHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---TTTTH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhc---ccchh
Confidence 4678999999999999999999998862 12233344455555522 2333333333322222111 11111
Q ss_pred HHHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHHHHHHhCCC--c-HHHHHHHHHHHHHHHHc-----C-----CHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKM-DTALRYLQEALKKNERLLGEE--H-IQTAVCYHALAIAFNCM-----G-----AFKLSHQ 1187 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~-deAl~~lekAL~l~~~~~G~~--~-~~~a~~~~~LA~~y~~~-----G-----d~~eAi~ 1187 (1403)
...... . ....+. ++=......++.+....+-+. . ......+...|..|... | -.+.|..
T Consensus 74 ~~~~~i----~--~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~ 147 (236)
T PF00244_consen 74 KQVKLI----K--DYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALE 147 (236)
T ss_dssp HHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHH
T ss_pred HHHHHH----H--HHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHH
Confidence 111111 0 001111 122233444444443322111 1 11222223334443321 1 2378999
Q ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1188 HEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1188 ~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.|++|+.+....+++.||.......+.+.+| +...++.++|+.+..
T Consensus 148 aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~-----yei~~~~~~A~~ia~ 193 (236)
T PF00244_consen 148 AYEEALEIAKKELPPTHPLRLGLALNYSVFY-----YEILNDPEKAIEIAK 193 (236)
T ss_dssp HHHHHHHHHHHHSCTTSHHHHHHHHHHHHHH-----HHTSS-HHHHHHHHH
T ss_pred hhhhHHHHHhcccCCCCcHHHHHHHHHHHHH-----HHHcCChHHHHHHHH
Confidence 9999999999999999999888888888776 366788888888777
No 334
>KOG3783 consensus Uncharacterized conserved protein [Function unknown]
Probab=88.19 E-value=27 Score=43.44 Aligned_cols=184 Identities=16% Similarity=0.171 Sum_probs=111.0
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH-HHHHH-HHHH--------hcCCHHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC-CRYLA-MVLY--------HAGDMAGAIMQQHKE 1066 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a-~~~LA-~iy~--------~~G~~~eAi~~~~kA 1066 (1403)
....++++|..+..+.+|..|...+....+.. +...+ |..++ -|+. ..|+-+.|..+.+..
T Consensus 302 ~~l~~fE~aw~~v~~~~~~~aad~~~~L~des---------dWS~a~Y~Yfa~cc~l~~~~~~q~~~~ne~~a~~~~k~~ 372 (546)
T KOG3783|consen 302 KSLMVFERAWLSVGQHQYSRAADSFDLLRDES---------DWSHAFYTYFAGCCLLQNWEVNQGAGGNEEKAQLYFKVG 372 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHhhh---------hhhHHHHHHHHHHHHhccHHHHHhcccchhHHHHHHHHH
Confidence 35678999999999999999999988776652 12222 22333 2332 234556666665555
Q ss_pred HHHHHHhcCCCChh--------------------H--HHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHhhcCCCCHH
Q 000589 1067 LIINERCLGLDHPD--------------------T--AHSYGNMALFYHGL--NQTELALRHMSRALLLLSLSSGPDHPD 1122 (1403)
Q Consensus 1067 L~i~er~lg~d~p~--------------------~--~~a~~nLA~~~~~~--G~~~eAl~~l~rAL~l~~~~~g~d~p~ 1122 (1403)
..+.... |...|- . +..|..++.++..- ....+.+ ++..-+...--.+..+
T Consensus 373 ~~l~~~a-~K~~P~E~f~~RKverf~~~~~~~~~~~la~P~~El~Y~Wngf~~~s~~~l~----k~~~~~~~~~~~d~Dd 447 (546)
T KOG3783|consen 373 EELLANA-GKNLPLEKFIVRKVERFVKRGPLNASILLASPYYELAYFWNGFSRMSKNELE----KMRAELENPKIDDSDD 447 (546)
T ss_pred HHHHHhc-cccCchhHHHHHHHHHHhccccccccccccchHHHHHHHHhhcccCChhhHH----HHHHHHhccCCCCchH
Confidence 4443331 111111 0 01233444443221 1222222 2221111111113334
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHH
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGA-FKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd-~~eAi~~lkkAl~i 1195 (1403)
..--+..+|.++..+|+-..|..+|..+++- +.....++-..+.+++.||.+|..+|. ..+|..++.+|-+.
T Consensus 448 ~~lk~lL~g~~lR~Lg~~~~a~~~f~i~~~~-e~~~~~d~w~~PfA~YElA~l~~~~~g~~~e~~~~L~kAr~~ 520 (546)
T KOG3783|consen 448 EGLKYLLKGVILRNLGDSEVAPKCFKIQVEK-ESKRTEDLWAVPFALYELALLYWDLGGGLKEARALLLKAREY 520 (546)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-HHhhccccccccHHHHHHHHHHHhcccChHHHHHHHHHHHhh
Confidence 4555777899999999999999999998876 233334556678899999999999999 99999999998664
No 335
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=88.18 E-value=52 Score=37.37 Aligned_cols=183 Identities=11% Similarity=0.096 Sum_probs=104.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH----hcC
Q 000589 1000 NLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINER----CLG 1075 (1403)
Q Consensus 1000 ~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er----~lg 1075 (1403)
.+..+++++.+.++|++++.++.+++... ......=.+.|+.+|- ..+.-.+.++++... ..+
T Consensus 3 ~li~~Aklaeq~eRy~dmv~~mk~~~~~~-------~eLt~eERnLlsvayK------n~i~~~R~s~R~l~~~e~~~~~ 69 (236)
T PF00244_consen 3 ELIYLAKLAEQAERYDDMVEYMKQLIEMN-------PELTEEERNLLSVAYK------NVIGSRRASWRILSSIEQKEEN 69 (236)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHTS-------S---HHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHccC-------CCCCHHHHHHHHHHHH------hccccchHHHHhhhhHhhhhcc
Confidence 45678999999999999999999998871 1122333444555542 223333333322211 111
Q ss_pred CCChhHHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHHHHhhcCCC--CHHH-HHHHHHHHHHHHHc----------CCHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQT-ELALRHMSRALLLLSLSSGPD--HPDV-AATFINVAMMYQDI----------GKMD 1141 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~-~eAl~~l~rAL~l~~~~~g~d--~p~~-a~~~~nLA~iy~~~----------g~~d 1141 (1403)
..++.... .+-....+. ++=...+..++.+....+-+. .+.. +..+-..|..|... .-.+
T Consensus 70 ~~~~~~~~------~i~~yk~kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~ 143 (236)
T PF00244_consen 70 KGNEKQVK------LIKDYKKKIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAE 143 (236)
T ss_dssp TTTHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHH
T ss_pred cchhHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHH
Confidence 11111111 110001111 222344555555554433221 2222 22222234444322 1247
Q ss_pred HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1142 TALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC-MGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1142 eAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~-~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
.|...|++|+.+....+.+.+|.......+.+..|+. +|+.++|++..++|++-....++
T Consensus 144 ~a~~aY~~A~~~a~~~L~~~~p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~~~l~ 204 (236)
T PF00244_consen 144 KALEAYEEALEIAKKELPPTHPLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAISELD 204 (236)
T ss_dssp HHHHHHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHGGG
T ss_pred HHHHhhhhHHHHHhcccCCCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhhhc
Confidence 8999999999999998899999998888888887755 89999999999999887665543
No 336
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=87.73 E-value=40 Score=42.49 Aligned_cols=125 Identities=14% Similarity=0.020 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH------HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHK------ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~k------AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
..+|.++...|.|.||..+|.+ |++++. -.-++.++.-+...|..++-..+.++--+-...+
T Consensus 636 iLlA~~~Ay~gKF~EAAklFk~~G~enRAlEmyT----------DlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~-- 703 (1081)
T KOG1538|consen 636 LLLADVFAYQGKFHEAAKLFKRSGHENRALEMYT----------DLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI-- 703 (1081)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHcCchhhHHHHHH----------HHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc--
Confidence 3577888889999999988875 333331 1123456666677777666666655544433322
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHH------HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRY------LQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~------lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
..|.. -|.++...|+.++|+.. .+-++++..++- ......+..++..+.....+.-|.+.|++
T Consensus 704 -kePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld----~~ere~l~~~a~ylk~l~~~gLAaeIF~k 772 (1081)
T KOG1538|consen 704 -KEPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLD----KAEREPLLLCATYLKKLDSPGLAAEIFLK 772 (1081)
T ss_pred -CCcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcc----hhhhhHHHHHHHHHhhccccchHHHHHHH
Confidence 22332 36677888888888764 344455444321 12223344445555555555555544443
No 337
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=87.53 E-value=17 Score=41.50 Aligned_cols=134 Identities=13% Similarity=0.102 Sum_probs=85.6
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Q 000589 1055 DMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMY 1134 (1403)
Q Consensus 1055 ~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy 1134 (1403)
.-++-++-+.+.++-.+...| ..+...++.|+|.+|.+.++.+.+.+.+.+.+.-.... .-..++.-+...||.+|
T Consensus 90 kneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~l~kiRlg~~y 165 (412)
T COG5187 90 KNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVFLCKIRLGLIY 165 (412)
T ss_pred hhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhHHHHHHHHHhh
Confidence 345556666666665555433 35678899999999999999999999998887654433 23456666778888888
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
..+.-..+.++.....++ + |.+....-..-...|...+...+|.+|-.++-..+..|.
T Consensus 166 ~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 166 GDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred ccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 776655555554444333 2 222222222223345556666778887777776665543
No 338
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=87.35 E-value=24 Score=43.56 Aligned_cols=179 Identities=11% Similarity=-0.010 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCH-------HHHHHHHHHHHHHHH
Q 000589 999 KNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDM-------AGAIMQQHKELIINE 1071 (1403)
Q Consensus 999 ~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~-------~eAi~~~~kAL~i~e 1071 (1403)
..+..+|..++..++|+.|...|..+..-+.. +.--...+.++-..|.+++..+.. ++...+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~--Dkaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKN--DKAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhh--chhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 34566899999999999999999998876542 111223455666666666666643 477888888888887
Q ss_pred HhcC---CCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHH---HHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1072 RCLG---LDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPD---VAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1072 r~lg---~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~---~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
+... ........+....+.++...+.+.+|...+-++..... ..... .+-.+-.+|.+|
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~----------- 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY----------- 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh-----------
Confidence 7321 12235566777788888899999888887777665421 00111 334444455554
Q ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1146 YLQEALKKNERLLG-EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G-~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
..+.......+ ......+.-+..-|.-|...|+...|+.+|.+|+.++.
T Consensus 352 ---~~~~~~~~~~~~~r~RK~af~~vLAg~~~~~~~~~~~a~rcy~~a~~vY~ 401 (414)
T PF12739_consen 352 ---ASLRSNRPSPGLTRFRKYAFHMVLAGHRYSKAGQKKHALRCYKQALQVYE 401 (414)
T ss_pred ---cccccCCCCccchhhHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhC
Confidence 00000000000 00123344444556789999999999999999999876
No 339
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=86.66 E-value=17 Score=41.64 Aligned_cols=144 Identities=13% Similarity=0.031 Sum_probs=93.2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
..+........-++-++-+.+.++-.+...| ..+.+.+..++|..|.+.++.+.+.+++.+.+.-...+ .-..+..
T Consensus 80 D~~~~n~l~kkneeki~Elde~i~~~eedng--E~e~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~st--g~KiDv~ 155 (412)
T COG5187 80 DRGRMNTLLKKNEEKIEELDERIREKEEDNG--ETEGSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMST--GLKIDVF 155 (412)
T ss_pred hhHHHHHHHHhhHHHHHHHHHHHHHHhhccc--chHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhc--ccchhhH
Confidence 3344443344456677777777777665443 34678999999999999999999999999887654322 2234566
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.+-..||.+|..+.-..+.++.....++ + |.|....-......|.......+|.+|-.++-.++..+.
T Consensus 156 l~kiRlg~~y~d~~vV~e~lE~~~~~iE---k--GgDWeRrNRyK~Y~Gi~~m~~RnFkeAa~Ll~d~l~tF~ 223 (412)
T COG5187 156 LCKIRLGLIYGDRKVVEESLEVADDIIE---K--GGDWERRNRYKVYKGIFKMMRRNFKEAAILLSDILPTFE 223 (412)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHHHH---h--CCCHHhhhhHHHHHHHHHHHHHhhHHHHHHHHHHhcccc
Confidence 6777888888665545555544444333 2 333333333344456666777788888888877776543
No 340
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=86.59 E-value=1.2 Score=54.65 Aligned_cols=110 Identities=15% Similarity=0.248 Sum_probs=82.1
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ 1164 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~ 1164 (1403)
++.-|.++...|+...|..++.+|+.... ......+.+||.++..-|-...|-.++.++|.+...
T Consensus 610 ln~aglywr~~gn~~~a~~cl~~a~~~~p-------~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~s-------- 674 (886)
T KOG4507|consen 610 LNEAGLYWRAVGNSTFAIACLQRALNLAP-------LQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSS-------- 674 (886)
T ss_pred eecccceeeecCCcHHHHHHHHHHhccCh-------hhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhccc--------
Confidence 33445555678999999999999986431 122334779999999999999999999999998621
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWM 1214 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~L 1214 (1403)
....++.+|++|..+.+.+.|++++++|++. .++.+.....+..+
T Consensus 675 epl~~~~~g~~~l~l~~i~~a~~~~~~a~~~-----~~~~~~~~~~l~~i 719 (886)
T KOG4507|consen 675 EPLTFLSLGNAYLALKNISGALEAFRQALKL-----TTKCPECENSLKLI 719 (886)
T ss_pred CchHHHhcchhHHHHhhhHHHHHHHHHHHhc-----CCCChhhHHHHHHH
Confidence 2235678999999999999999999999984 34455444444333
No 341
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=86.44 E-value=66 Score=36.73 Aligned_cols=183 Identities=9% Similarity=0.029 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC---C-------hhHHHHHHHHHHHHHHCC--------------CHH
Q 000589 1044 RYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD---H-------PDTAHSYGNMALFYHGLN--------------QTE 1099 (1403)
Q Consensus 1044 ~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d---~-------p~~~~a~~nLA~~~~~~G--------------~~~ 1099 (1403)
+.+..+|+..|+..+|+..+++=+..+....+.. . .-.+.-|..+|.+..... -|.
T Consensus 14 ~ki~rl~l~~~~~~~Av~q~~~H~~~~~~~~~~~g~g~~~~~~~~aW~srq~~~fAeL~~~~~~~~l~~~~~~~pG~yy~ 93 (247)
T PF11817_consen 14 FKICRLYLWLNQPTEAVRQFRAHIDRFKDIVGRRGKGTLAFEHWQAWESRQYQVFAELLEEAPISGLTPPSTQHPGFYYQ 93 (247)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHHHHhhcCCCCCCccchhhHHHHHHHHHHHHHHHHHhcccccCCCCCCCCcchHHH
Confidence 4567889999999999999999988888776551 1 111223445565554432 234
Q ss_pred HHHHHHHHHHHHHHhhcC-CC-------------------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1100 LALRHMSRALLLLSLSSG-PD-------------------HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1100 eAl~~l~rAL~l~~~~~g-~d-------------------~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
.|..+...-......... ++ .+.....+..+.........-...++++.+|+..+....
T Consensus 94 ~AA~~~~~Rr~~a~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~hs~~iI~lL~~A~~~f~~~~- 172 (247)
T PF11817_consen 94 IAAKHAVERRKLAEAIPPDPDSSPASSVVPSFYGYDTYSLPPSPHEEYPLLQSEEKGVDHSKLIIELLEKAYEQFKKYG- 172 (247)
T ss_pred HHHHHHHHHHHHHHhccCCCCCCchhhccchhhcccccccCchhHHHHHhhhccccccchHHHHHHHHHHHHHHHHHhc-
Confidence 454444443444444320 01 000011111111111123345577889999998887642
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
.......+...+|.-|...|++++|+.+++.+...+++. .-..-....+..|..++ ...|+.+..+..
T Consensus 173 -~~R~~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~e--gW~~l~~~~l~~l~~Ca------~~~~~~~~~l~~ 240 (247)
T PF11817_consen 173 -QNRMASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRRE--GWWSLLTEVLWRLLECA------KRLGDVEDYLTT 240 (247)
T ss_pred -cchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHH------HHhCCHHHHHHH
Confidence 245566778899999999999999999999997776642 11222333444444444 566666665543
No 342
>smart00213 UBQ Ubiquitin homologues. Ubiquitin-mediated proteolysis is involved in the regulated turnover of proteins required for controlling cell cycle progression
Probab=86.41 E-value=1 Score=39.34 Aligned_cols=62 Identities=21% Similarity=0.345 Sum_probs=48.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITT 153 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~ 153 (1403)
+.|.|+.++ ..+.+.+.++++|.+|++.|..... +.-.+..|.++| ..|+|-..|+++ |+++
T Consensus 1 ~~i~vk~~~-~~~~~~v~~~~tv~~lk~~i~~~~~-~~~~~~~L~~~g-----~~L~d~~tL~~~-~i~~ 62 (64)
T smart00213 1 IELTVKTLD-GTITLEVKPSDTVSELKEKIAELTG-IPVEQQRLIYKG-----KVLEDDRTLADY-NIQD 62 (64)
T ss_pred CEEEEEECC-ceEEEEECCCCcHHHHHHHHHHHHC-CCHHHEEEEECC-----EECCCCCCHHHc-CCcC
Confidence 468999999 7899999999999999999987754 344567888888 678887666655 3443
No 343
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=86.16 E-value=7.2 Score=36.19 Aligned_cols=72 Identities=17% Similarity=0.160 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
.+....+.|.-++.+.+.++|+..+.++++.. .+.++...++..|..+|...|+|.+++.+..+=+.+.+..
T Consensus 5 ~ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 5 QAKQQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 35666777888889999999999999999874 3356788899999999999999999999998888887654
No 344
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=85.97 E-value=87 Score=39.69 Aligned_cols=178 Identities=13% Similarity=0.048 Sum_probs=88.3
Q ss_pred HHHHHHHcCCHHHHHHHHHH------HHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 1004 MGKVQLAEGLLSEAYTLFSE------AFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~e------AL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
++..+..+|+|.+|..+|.+ |++++.. .-++.+++-|...|.-++-..+.++--.....+ .
T Consensus 638 lA~~~Ay~gKF~EAAklFk~~G~enRAlEmyTD----------lRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~---k 704 (1081)
T KOG1538|consen 638 LADVFAYQGKFHEAAKLFKRSGHENRALEMYTD----------LRMFDYAQEFLGSGDPKEKKMLIRKRADWARNI---K 704 (1081)
T ss_pred HHHHHHhhhhHHHHHHHHHHcCchhhHHHHHHH----------HHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhc---C
Confidence 34455556666666666643 3333221 124556677777777777666666544433222 2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHH------HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHM------SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l------~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
.|.. -|..+...|+.++|+.+. .-++++.+++ +......+-.++..+..+..+.-|-+.|++.=
T Consensus 705 ePka------AAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkl----d~~ere~l~~~a~ylk~l~~~gLAaeIF~k~g 774 (1081)
T KOG1538|consen 705 EPKA------AAEMLISAGEHVKAIEICGDHGWVDMLIDIARKL----DKAEREPLLLCATYLKKLDSPGLAAEIFLKMG 774 (1081)
T ss_pred CcHH------HHHHhhcccchhhhhhhhhcccHHHHHHHHHhhc----chhhhhHHHHHHHHHhhccccchHHHHHHHhc
Confidence 2322 356677788888887653 2333333332 11122334444444445555555554444322
Q ss_pred HHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHHHhhcH
Q 000589 1152 KKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTK-DSQNWMKTFKMRELQMNVQKQK 1230 (1403)
Q Consensus 1152 ~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~-~a~~~La~l~~r~~~~~~qg~~ 1230 (1403)
+. ..+-......+++++|....++ ||... ..+.-.+++ .....++
T Consensus 775 D~----------------ksiVqlHve~~~W~eAFalAe~------------hPe~~~dVy~pyaqw------LAE~DrF 820 (1081)
T KOG1538|consen 775 DL----------------KSLVQLHVETQRWDEAFALAEK------------HPEFKDDVYMPYAQW------LAENDRF 820 (1081)
T ss_pred cH----------------HHHhhheeecccchHhHhhhhh------------CccccccccchHHHH------hhhhhhH
Confidence 11 1233444556677766654432 33322 122223333 3666777
Q ss_pred HHHHHHHH
Q 000589 1231 GQAFNAAS 1238 (1403)
Q Consensus 1231 ~eAi~~l~ 1238 (1403)
++|...+.
T Consensus 821 eEAqkAfh 828 (1081)
T KOG1538|consen 821 EEAQKAFH 828 (1081)
T ss_pred HHHHHHHH
Confidence 77776665
No 345
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=85.91 E-value=7.4 Score=36.11 Aligned_cols=69 Identities=22% Similarity=0.177 Sum_probs=56.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
....-|.-++...+.++|+..+++++... .+.++...++-.|..+|...|+|.+++.+...=+++..+.
T Consensus 8 ~~ie~GlkLY~~~~~~~Al~~W~~aL~k~-----~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~A~el 76 (80)
T PF10579_consen 8 QQIEKGLKLYHQNETQQALQKWRKALEKI-----TDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEIAEEL 76 (80)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHHHhhc-----CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 34455666778899999999999999764 3457788889999999999999999999988888877654
No 346
>KOG4014 consensus Uncharacterized conserved protein (contains TPR repeat) [Function unknown]
Probab=85.84 E-value=9.5 Score=40.85 Aligned_cols=156 Identities=15% Similarity=0.175 Sum_probs=97.3
Q ss_pred CCHHHHH-HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH-----hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHH
Q 000589 1012 GLLSEAY-TLFSEAFSILQQVTGPMHREVANCCRYLAMVLY-----HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSY 1085 (1403)
Q Consensus 1012 G~~eeA~-~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~-----~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~ 1085 (1403)
|+|-+++ .-|+.|..+++.....+ ..+...+.+|..++ ..++...|++++..+... ....+.
T Consensus 41 gdYlEgi~knF~~A~kv~K~nCden--~y~kSCyKyG~y~~~GKgG~~~~l~~a~r~~~~aC~~----------n~~~aC 108 (248)
T KOG4014|consen 41 GDYLEGIQKNFQAAVKVFKKNCDEN--SYPKSCYKYGMYMLAGKGGDDASLSKAIRPMKIACDA----------NIPQAC 108 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccc--CCcHHHHHhhhhhhcccCCCccCHHHHHHHHHHHhcc----------CCHHHH
Confidence 3344443 34666666665544332 34455666666554 346788999999988763 345567
Q ss_pred HHHHHHHHHC-----C--CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH----------------------
Q 000589 1086 GNMALFYHGL-----N--QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD---------------------- 1136 (1403)
Q Consensus 1086 ~nLA~~~~~~-----G--~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~---------------------- 1136 (1403)
.++|.+++.- + +..+|++++.+|-.+ ....+.++|..+|..
T Consensus 109 ~~~gLl~~~g~~~r~~dpd~~Ka~~y~traCdl----------~~~~aCf~LS~m~~~g~~k~~t~ap~~g~p~~~~~~~ 178 (248)
T KOG4014|consen 109 RYLGLLHWNGEKDRKADPDSEKAERYMTRACDL----------EDGEACFLLSTMYMGGKEKFKTNAPGEGKPLDRAELG 178 (248)
T ss_pred hhhhhhhccCcCCccCCCCcHHHHHHHHHhccC----------CCchHHHHHHHHHhccchhhcccCCCCCCCcchhhhh
Confidence 7888888742 2 367889999888753 122334444444443
Q ss_pred --cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHH
Q 000589 1137 --IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCM----GAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1137 --~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~----Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
..+.+.|.++--+|-++ ....+..|+.+.|..- ++-++|..+-..|.+|.+..
T Consensus 179 ~~~kDMdka~qfa~kACel----------~~~~aCAN~SrMyklGDGv~Kde~~Aekyk~rA~e~~~e~ 237 (248)
T KOG4014|consen 179 SLSKDMDKALQFAIKACEL----------DIPQACANVSRMYKLGDGVPKDEDQAEKYKDRAKEIMEEL 237 (248)
T ss_pred hhhHhHHHHHHHHHHHHhc----------CChHHHhhHHHHHHccCCCCccHHHHHHHHHHHHHHHHHH
Confidence 35667777777666654 2344566777776542 36788999999998887654
No 347
>cd01813 UBP_N UBP ubiquitin processing protease. The UBP (ubiquitin processing protease) domain (also referred to as USP which stands for "ubiquitin-specific protease") is present at in a large family of cysteine proteases that specifically cleave ubiquitin conjugates. This family includes Rpn11, UBP6 (USP14), USP7 (HAUSP). This domain is closely related to the amino-terminal ubiquitin-like domain of BAG1 (Bcl2-associated anthanogene1) protein and is found only in eukaryotes.
Probab=85.69 E-value=2 Score=39.49 Aligned_cols=68 Identities=22% Similarity=0.300 Sum_probs=54.5
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeee---CCCCCCccccccccccccccccCCCccEEEEE
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVL---HTKDGSTHHLEDYNEISEVADITTGGCTLEMV 161 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~---~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v 161 (1403)
+|+|+.- +..+++.+.++++|.|+++.|..... +.-..-.|.+ .| ..|+|...|+++ ++++ +..|.|+
T Consensus 2 ~i~vk~~-g~~~~v~v~~~~Tv~~lK~~i~~~tg-vp~~~QKLi~~~~~G-----k~l~D~~~L~~~-~i~~-g~~i~lm 72 (74)
T cd01813 2 PVIVKWG-GQEYSVTTLSEDTVLDLKQFIKTLTG-VLPERQKLLGLKVKG-----KPAEDDVKISAL-KLKP-NTKIMMM 72 (74)
T ss_pred EEEEEEC-CEEEEEEECCCCCHHHHHHHHHHHHC-CCHHHEEEEeecccC-----CcCCCCcCHHHc-CCCC-CCEEEEE
Confidence 5777774 56689999999999999999999864 6666677775 44 678899999988 7887 7777765
No 348
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.66 E-value=34 Score=40.71 Aligned_cols=128 Identities=13% Similarity=0.055 Sum_probs=88.6
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 000589 1014 LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYH 1093 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~ 1093 (1403)
.+.-+.+|++|++. .+++..+...|..++ ....+-++...-.++++... +..+.....|...-...+
T Consensus 47 ~E~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~~-----~~~~~LW~~yL~~~q~~~ 113 (321)
T PF08424_consen 47 AERKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFKN-----PGSPELWREYLDFRQSNF 113 (321)
T ss_pred HHHHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHHC-----CCChHHHHHHHHHHHHHh
Confidence 34556677777776 344455444444444 45556677777777777652 344556666665555555
Q ss_pred HCCCHHHHHHHHHHHHHHHHhhcCCC----------CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1094 GLNQTELALRHMSRALLLLSLSSGPD----------HPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1094 ~~G~~~eAl~~l~rAL~l~~~~~g~d----------~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
..-.+......|.+++.......... ......++.++...+.+.|..+.|+..++..++++
T Consensus 114 ~~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n 184 (321)
T PF08424_consen 114 ASFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFN 184 (321)
T ss_pred ccCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHH
Confidence 66778999999999998776554332 23466778888999999999999999999999876
No 349
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=85.53 E-value=54 Score=39.06 Aligned_cols=126 Identities=9% Similarity=0.037 Sum_probs=82.2
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1057 ~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
+.-+.+|++|+.. .+++......|..++ ....+.++..+-+++++.. .+..+.+...|...-.....
T Consensus 48 E~klsilerAL~~-----np~~~~L~l~~l~~~---~~~~~~~~l~~~we~~l~~-----~~~~~~LW~~yL~~~q~~~~ 114 (321)
T PF08424_consen 48 ERKLSILERALKH-----NPDSERLLLGYLEEG---EKVWDSEKLAKKWEELLFK-----NPGSPELWREYLDFRQSNFA 114 (321)
T ss_pred HHHHHHHHHHHHh-----CCCCHHHHHHHHHHH---HHhCCHHHHHHHHHHHHHH-----CCCChHHHHHHHHHHHHHhc
Confidence 3444555555554 234444444444444 4555777777777777754 13345555555555444455
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCC----------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1137 IGKMDTALRYLQEALKKNERLLGEE----------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~~G~~----------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.-.++.....|.+++.......... ......++..++..+...|-.+.|+..++-.+++
T Consensus 115 ~f~v~~~~~~y~~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~ 183 (321)
T PF08424_consen 115 SFTVSDVRDVYEKCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEF 183 (321)
T ss_pred cCcHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHH
Confidence 6678899999999998876554332 2345667788899999999999999999988876
No 350
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.44 E-value=39 Score=42.65 Aligned_cols=69 Identities=13% Similarity=0.114 Sum_probs=49.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
..+.|-|.-+.+..+|..|+++|...+..... ...+...+....+|+.+|..+.+.+.|.+++++|-+.
T Consensus 355 ~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~ 423 (872)
T KOG4814|consen 355 TLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEV 423 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhh
Confidence 44556677777888888888888888775422 1123445677788888888888888888888888653
No 351
>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []. Trs85 is a multimeric guanine nucleotide-exchange factor for Ypt1, required for membrane expansion during autophagy and the CVT pathway. It directs Ypt1 to the phagophore assembly site [, , , ].
Probab=84.98 E-value=45 Score=41.24 Aligned_cols=130 Identities=14% Similarity=-0.075 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT-------ELALRHMSRALLLLS 1113 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~-------~eAl~~l~rAL~l~~ 1113 (1403)
..+..||.+++.+++|+-|...|+-+..-+... .--...+.++-..|.+++..+.. +....+++.|+..+.
T Consensus 209 ~q~R~LAD~aFml~Dy~~A~s~Y~~~k~Df~~D--kaw~~~A~~~Em~alsl~~~~~~~~~k~~~~~~~~~le~A~~~Y~ 286 (414)
T PF12739_consen 209 AQMRRLADLAFMLRDYELAYSTYRLLKKDFKND--KAWKYLAGAQEMAALSLLMQGQSISAKIRKDEIEPYLENAYYTYL 286 (414)
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHHHhhc--hhHHHHHhHHHHHHHHHHhcCCCCccccccccHHHHHHHHHHHHH
Confidence 356789999999999999999999887765321 00112344555566666666643 477788888888877
Q ss_pred hhcC---CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHH---HHHHHHHHHHHH
Q 000589 1114 LSSG---PDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQ---TAVCYHALAIAF 1176 (1403)
Q Consensus 1114 ~~~g---~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~---~a~~~~~LA~~y 1176 (1403)
.... ........+....+.++...+.+.+|...+-+...... ..... .+.++..+|.+|
T Consensus 287 ~~~~~~~~~~~~a~R~~ll~~ell~~~~~~~~a~~~~~~~~~~~l----~~~l~~~~~alllE~~a~~~ 351 (414)
T PF12739_consen 287 KSALPRCSLPYYALRCALLLAELLKSRGGYWEAADQLIRWTSEIL----ESDLRPFGSALLLEQAAYCY 351 (414)
T ss_pred hhhccccccccchHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHH----hhhhhhHhhHHHHHHHHHhh
Confidence 6321 12235566777788888999999888887766665421 01122 455556666666
No 352
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=84.95 E-value=78 Score=36.18 Aligned_cols=186 Identities=11% Similarity=0.026 Sum_probs=105.3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1001 LVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYH-AGDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1001 l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~-~G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
+..++++.-+.++|++++.+..+++.+.. + ......-.+.|..+|-. .|....+...... ++..+...|. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 45678888899999999999999877521 0 01122334445555532 3444445444433 2221111111 1
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC--CHH-HHHHHHHHHHHHHHc-----C-----CHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD--HPD-VAATFINVAMMYQDI-----G-----KMDTALRY 1146 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d--~p~-~a~~~~nLA~iy~~~-----g-----~~deAl~~ 1146 (1403)
... .+..-|. ..=-++=..++...+.+....+-+. .+. ....+-..|..|+.+ | -.+.|...
T Consensus 76 ~~~----~~~~~yr-~kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DHV----ASIKEYR-GKIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HHH----HHHHHHH-HHHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 110 1111111 0011233455666666665554432 121 222222234443322 2 15689999
Q ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHHHHHH
Q 000589 1147 LQEALKKNERLLGEEHIQTAVCYHALAIAFNC-MGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1147 lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~-~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
|++|+++....+.+.||.......|.+..|+. +++.++|.+..++|++-....
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~yEI~~~~~~A~~lAk~afd~Ai~~ 204 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFYYEILNSPDRACNLAKQAFDEAIAE 204 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 99999998877788899888888888877665 699999999999888765443
No 353
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=84.83 E-value=1.2e+02 Score=44.32 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=107.4
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
+.....++.|++.|++....|+++.|..++-.|.+.. ...++...|..++..|+-..|+.++++.+....
T Consensus 1664 ~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1664 NLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred cccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4566779999999999999999999999999887762 456888999999999999999999999997653
Q ss_pred HhcCC---CCh------hHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH-----HHHHH
Q 000589 1072 RCLGL---DHP------DTAHSYGNMALFYHGLNQT--ELALRHMSRALLLLSLSSGPDHPDVAATFINV-----AMMYQ 1135 (1403)
Q Consensus 1072 r~lg~---d~p------~~~~a~~nLA~~~~~~G~~--~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL-----A~iy~ 1135 (1403)
--+-. +.| ....+...++.+....+++ ..-+++|..|.++...-- ..|-..+..|-.+ +..+.
T Consensus 1734 ~~~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe-~~hy~l~~yy~kll~~~~~~~~E 1812 (2382)
T KOG0890|consen 1734 PDLHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWE-DKHYHLGKYYDKLLEDYKSNKME 1812 (2382)
T ss_pred ccccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHccccc-CceeeHHHHHHHHhhhhhccccc
Confidence 22111 011 1123455555665555653 344678888887754321 1122222111111 11122
Q ss_pred HcCCHHH---HHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH
Q 000589 1136 DIGKMDT---ALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC 1178 (1403)
Q Consensus 1136 ~~g~~de---Al~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~ 1178 (1403)
..|++.. ++-+|.+|+....+..-..-|.....|..+|..+..
T Consensus 1813 ~~g~~~~~l~~~~~~~~sl~yg~~~iyqsmPRllTLWLD~~t~~~~ 1858 (2382)
T KOG0890|consen 1813 KSGRVLSLLKAIYFFGRALYYGNQHLYQSMPRLLTLWLDIGTHISS 1858 (2382)
T ss_pred ccccHHHHHHHHHHHHHHHHhcchhHHHhhhHHHHHHHhhcchhcc
Confidence 3455555 555556666543322222234555566666555544
No 354
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.80 E-value=62 Score=39.24 Aligned_cols=118 Identities=15% Similarity=0.063 Sum_probs=73.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC---CCHHHHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP---MHREVANCCRYLAMVLYHAGDM---AGAIMQQHKELIINE 1071 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~---~~p~~a~a~~~LA~iy~~~G~~---~eAi~~~~kAL~i~e 1071 (1403)
+..+++.|++++....|.+|+.++.+|-+.+-..... .--.++-.-..+-|||+.+.+. ..|..-+..|-+-++
T Consensus 163 glg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~ 242 (568)
T KOG2561|consen 163 GLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFE 242 (568)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhh
Confidence 5667888999999999999999998887765432100 0001222333456677766543 456666666655555
Q ss_pred HhcCC-----------CChhHH---HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1072 RCLGL-----------DHPDTA---HSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1072 r~lg~-----------d~p~~~---~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+.+|. +.|+.+ ..+..-|.+.+.+|+-++|.++++.|...+...
T Consensus 243 ~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 243 RSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 55543 444433 334445777777777777877777777655443
No 355
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=84.09 E-value=0.52 Score=54.68 Aligned_cols=89 Identities=21% Similarity=0.236 Sum_probs=78.0
Q ss_pred HHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Q 000589 1049 VLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFI 1128 (1403)
Q Consensus 1049 iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~ 1128 (1403)
-.+..|.+++|++.|..|+.+ +|..+..|...+.++..++++..|++-|..|+.+ +|+.+.-|-
T Consensus 123 eAln~G~~~~ai~~~t~ai~l--------np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ei--------n~Dsa~~yk 186 (377)
T KOG1308|consen 123 EALNDGEFDTAIELFTSAIEL--------NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEI--------NPDSAKGYK 186 (377)
T ss_pred HHhcCcchhhhhccccccccc--------CCchhhhcccccceeeeccCCchhhhhhhhhhcc--------Ccccccccc
Confidence 345678899999999999987 5788899999999999999999999999999976 567777788
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1129 NVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1129 nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.-+.....+|+|.+|..+|..|+++
T Consensus 187 frg~A~rllg~~e~aa~dl~~a~kl 211 (377)
T KOG1308|consen 187 FRGYAERLLGNWEEAAHDLALACKL 211 (377)
T ss_pred hhhHHHHHhhchHHHHHHHHHHHhc
Confidence 8888899999999999999988764
No 356
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=84.07 E-value=49 Score=41.22 Aligned_cols=163 Identities=13% Similarity=0.094 Sum_probs=91.4
Q ss_pred HHHHHHHHCCC-------HHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Q 000589 1087 NMALFYHGLNQ-------TELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGK---MDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1087 nLA~~~~~~G~-------~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~---~deAl~~lekAL~l~~~ 1156 (1403)
..+.++...|+ .++|..+|++++..... .....++.++..-...-+ ++....++++++.+.
T Consensus 291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~-------~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~-- 361 (656)
T KOG1914|consen 291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLK-------ENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIE-- 361 (656)
T ss_pred HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHH-------HHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhh--
Confidence 34445555554 45666667776654321 223334444433222222 455555566655543
Q ss_pred HhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHH
Q 000589 1157 LLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNA 1236 (1403)
Q Consensus 1157 ~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~ 1236 (1403)
+.+...++.++-+.-.+..-...|...|.+|-+.- .+..|--+..+ .+. +..+++..-|..+
T Consensus 362 -----~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~---r~~hhVfVa~A--~mE--------y~cskD~~~AfrI 423 (656)
T KOG1914|consen 362 -----DIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDK---RTRHHVFVAAA--LME--------YYCSKDKETAFRI 423 (656)
T ss_pred -----ccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhcc---CCcchhhHHHH--HHH--------HHhcCChhHHHHH
Confidence 23333445555555555556677777777765421 11212222111 111 2678999999999
Q ss_pred HHHHHHHHHHhhChHHHHHHHHHH-HhCChHHHHHHHHHHHHH
Q 000589 1237 ASTQKAIDILKAHPDLIHAFQAVA-AAGGSGNSGASANNSLNA 1278 (1403)
Q Consensus 1237 l~~qkALei~~~~p~~~~a~~~La-~~G~~~eA~~~~ekAL~~ 1278 (1403)
++ -.|.-+.+.|.....|...- ..++-..|..+|++++..
T Consensus 424 Fe--LGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 424 FE--LGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HH--HHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 88 66777778887776665554 778888888888888873
No 357
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.48 E-value=2.4 Score=33.75 Aligned_cols=35 Identities=23% Similarity=0.241 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
.+|..||.+....++|++|+.-|++++.+.++.+.
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~ 36 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLP 36 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcC
Confidence 57889999999999999999999999999887654
No 358
>cd01769 UBL Ubiquitin-like domain of UBL. UBLs function by remodeling the surface of their target proteins, changing their target's half-life, enzymatic activity, protein-protein interactions, subcellular localization or other properties. At least 10 different ubiquitin-like modifications exist in mammals, and attachment of different ubls to a target leads to different biological consequences. Ubl-conjugation cascades are initiated by activating enzymes, which also coordinate the ubls with their downstream pathways.
Probab=83.36 E-value=3 Score=36.92 Aligned_cols=67 Identities=25% Similarity=0.370 Sum_probs=52.7
Q ss_pred EeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 88 VKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 88 v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
|+..++..+.+.+.+.++|.++++.|..... ..-.+..|.++| ..|+|...|.+. |+.+ +..|.|+.
T Consensus 2 v~~~~~~~~~~~~~~~~ti~~lK~~i~~~~~-~~~~~~~l~~~g-----~~l~d~~~l~~~-~v~~-~~~i~v~~ 68 (69)
T cd01769 2 VKTLTGKTFELEVSPDDTVAELKAKIAAKEG-VPPEQQRLIYAG-----KILKDDKTLSDY-GIQD-GSTLHLVL 68 (69)
T ss_pred eEccCCCEEEEEECCCChHHHHHHHHHHHHC-cChHHEEEEECC-----cCCCCcCCHHHC-CCCC-CCEEEEEE
Confidence 5666788889999999999999999998865 556678888888 678888777653 6676 67777653
No 359
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=83.29 E-value=2.5 Score=33.61 Aligned_cols=36 Identities=17% Similarity=0.218 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGE 1160 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~ 1160 (1403)
.++..||.+-...++|++|+.-|+++|++.++++.+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~~~l~~~ 37 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALEIQEELLPP 37 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 468889999999999999999999999999877543
No 360
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.65 E-value=1.8 Score=32.19 Aligned_cols=29 Identities=28% Similarity=0.567 Sum_probs=26.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
+++++|.++...|++++|+..|++.++..
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~ 30 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKRY 30 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 67899999999999999999999998753
No 361
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=82.58 E-value=1.8 Score=32.23 Aligned_cols=29 Identities=24% Similarity=0.220 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.+++.+|.+|..+|++++|+.++++.+..
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 36889999999999999999999999876
No 362
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=82.55 E-value=1e+02 Score=38.63 Aligned_cols=171 Identities=19% Similarity=0.089 Sum_probs=87.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcC---CHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAG---DMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G---~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
..+.++...|+..+|-.+-.++.++++.............|+.++..--..- .++.-..++++++.+ .+.
T Consensus 291 ~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~-------~~~ 363 (656)
T KOG1914|consen 291 EISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKI-------EDI 363 (656)
T ss_pred HhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhh-------hcc
Confidence 3455555566655555555555555444221111222223333332211111 133334444444443 233
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLG 1159 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G 1159 (1403)
+...+|.++-.+-.+..=...|...|.+|.+.-. +..|..++.++ .-|...++..-|.+.|+-.|+.. |
T Consensus 364 ~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r---~~hhVfVa~A~----mEy~cskD~~~AfrIFeLGLkkf----~ 432 (656)
T KOG1914|consen 364 DLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKR---TRHHVFVAAAL----MEYYCSKDKETAFRIFELGLKKF----G 432 (656)
T ss_pred CCceehhHHHHHHHHhhhHHHHHHHHHHHhhccC---CcchhhHHHHH----HHHHhcCChhHHHHHHHHHHHhc----C
Confidence 3333445555555555566777777877765321 12222222222 23567788888988888777654 2
Q ss_pred CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1160 EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1160 ~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+.+.... .....+...++-..|..+|++++.-
T Consensus 433 -d~p~yv~---~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 433 -DSPEYVL---KYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred -CChHHHH---HHHHHHHHhCcchhHHHHHHHHHhc
Confidence 3344333 3344566778888888888887753
No 363
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.43 E-value=14 Score=44.13 Aligned_cols=104 Identities=20% Similarity=0.194 Sum_probs=75.2
Q ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH---HHH
Q 000589 1081 TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKN---ERL 1157 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~---~~~ 1157 (1403)
+-.++..+|..|...|+++.|++.|-|+...+.. ...++..+.|+-.+-..+|+|..-..+-.+|.... ...
T Consensus 149 iRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~ 223 (466)
T KOG0686|consen 149 IRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENL 223 (466)
T ss_pred HHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhH
Confidence 4567889999999999999999999998887644 36788889999999999999998888888887652 100
Q ss_pred hCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1158 LGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKT 1192 (1403)
Q Consensus 1158 ~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkA 1192 (1403)
...-+....++..|+ ...+++|..|..++-.+
T Consensus 224 -~q~v~~kl~C~agLa--~L~lkkyk~aa~~fL~~ 255 (466)
T KOG0686|consen 224 -AQEVPAKLKCAAGLA--NLLLKKYKSAAKYFLLA 255 (466)
T ss_pred -HHhcCcchHHHHHHH--HHHHHHHHHHHHHHHhC
Confidence 001112233444444 44555888888877654
No 364
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=82.25 E-value=15 Score=36.84 Aligned_cols=73 Identities=18% Similarity=0.194 Sum_probs=58.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC---hh----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDH---PD----TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~---p~----~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+..+|...++.+++-.|+-.|++|+.+.++...... .+ .+....|||.++..+|+.+-.++|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567889999999999999999999999988732211 11 23456799999999999999999999888765544
No 365
>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=82.02 E-value=1.3e+02 Score=36.63 Aligned_cols=115 Identities=16% Similarity=0.010 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC----CHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD----HPDVAATFINVAMMYQDIGK---MDTALRYLQEALKKNER 1156 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d----~p~~a~~~~nLA~iy~~~g~---~deAl~~lekAL~l~~~ 1156 (1403)
.|..-|........|++|+.++-.|-+.+... ++. -.+.+..-..+-+||+.+.+ ...|..-+..|-+-+..
T Consensus 165 g~hekaRa~m~re~y~eAl~~LleADe~F~~C-d~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf~~ 243 (568)
T KOG2561|consen 165 GLHEKARAAMEREMYSEALLVLLEADESFSLC-DSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGFER 243 (568)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhh-hHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhhhh
Confidence 34455666666777888887777776654332 110 01122223344566666554 45676666666666665
Q ss_pred HhCCC-----------cHHH---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1157 LLGEE-----------HIQT---AVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1157 ~~G~~-----------~~~~---a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
.+|.+ .|.. ...+..-|.+.+.+|+-++|.++++.|...+.+.
T Consensus 244 syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~~l~el 300 (568)
T KOG2561|consen 244 SYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHAKLLEL 300 (568)
T ss_pred hhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHe
Confidence 55544 3333 3445667899999999999999999998776654
No 366
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=81.84 E-value=1.6e+02 Score=37.55 Aligned_cols=107 Identities=14% Similarity=0.073 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...++|-|.-+++..+|..|++.|+..+..... ...+...+....+|+.||..+.+.|.|.+++++|-+.-
T Consensus 354 H~iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~--D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d------- 424 (872)
T KOG4814|consen 354 HTLLWNTAKKLFKMEKYVVSIRFYKLSLKDIIS--DNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVD------- 424 (872)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhccc--hhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhc-------
Confidence 356778888899999999999999998865422 12334568889999999999999999999999997743
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
+........+-.+....|+-++|+........++..
T Consensus 425 -~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 425 -RQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred -cccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 233344555666777788899999888877766543
No 367
>cd01772 SAKS1_UBX SAKS1-like UBX domain. SAKS1 (SAPK-substrate-1), also known as Y33K, is a widely expressed protein containing N-terminal UBA (ubiquitin-associated) and C-terminal UBX (ubiqiutin-like) domains that was identified as a substrate of stress-activated protein kinases (SAPKs). SAKS1 is related evolutionarily to two other UBA/UBX-containing proteins, p47 and Faf1. The UBA and UBX domains of SAKS1 bind ubiquitin tetramers and valosin-containing protein (VCP), respectively suggesting a role for SAKS1 as an adaptor that directs VCP to polyubiquitinated proteins facilitating its destruction by the proteasome. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=81.75 E-value=6.5 Score=36.57 Aligned_cols=46 Identities=9% Similarity=0.106 Sum_probs=37.4
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHT 131 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~ 131 (1403)
..|.|++|+|+.++-.+.++++|.||++++..... .-..|.|...-
T Consensus 5 ~~i~iRlp~G~~~~~~F~~~~tl~~v~~fV~~~~~--~~~~f~L~t~f 50 (79)
T cd01772 5 TRIQIRLLDGTTLKQTFKAREQLAAVRLFVELNTG--NGGPFTLMTPF 50 (79)
T ss_pred EEEEEECCCCCEEEEEeCCCChHHHHHHHHHHcCC--CCCCEEEEeCC
Confidence 46899999999999999999999999999986532 22667887543
No 368
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=81.69 E-value=98 Score=37.53 Aligned_cols=124 Identities=27% Similarity=0.261 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHH-----HHHHHHHHHhhh--------c--c----cCCCccHHHHH
Q 000589 922 LWSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQ-----KVGISVTARKYD--------F--N----AATPFETSDIL 982 (1403)
Q Consensus 922 lw~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~-----k~Giql~~~~Y~--------f--~----~~~~f~~~dI~ 982 (1403)
+-..+.+.+...|. +-++.+...+..+.-||.-+. ..|+....+.|. | . ...+|.+.|..
T Consensus 21 ~~~~L~~~I~~~y~-~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp~~~~~~~~v~F~W~d~~ 99 (361)
T cd09239 21 FQPALKKYILENYG-EDPELYSEELKSLEQLRQEAVNPPRDFEGCSVLKRYYGQLHLLQSRFPMGAGQEAAVPFTWTDIF 99 (361)
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHHhcCCCCccccccceeeeeccc
Confidence 44456666666664 334444445566666665432 234333333331 1 1 12355555554
Q ss_pred hhhhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC---------CCCHHHHHHHH
Q 000589 983 NLQPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG---------PMHREVANCCR 1044 (1403)
Q Consensus 983 ~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g---------~~~p~~a~a~~ 1044 (1403)
. ..-+...+-....+..+|++|-+|.+.| .++.|..+|+.|--.++.+.. ..++++..++.
T Consensus 100 ~-~~~~~~~~l~fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~~l~e~~~~~~~~~Dl~~~~l~~L~ 178 (361)
T cd09239 100 S-GSEVTHEDIKFEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFAYLREHYPQVYGAVDMSSQLLSFNY 178 (361)
T ss_pred C-CCchhhhhHHHHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCcccCCHHHHHHHH
Confidence 3 1222223344456888899998886544 267788888888776554321 33445555555
Q ss_pred HHH
Q 000589 1045 YLA 1047 (1403)
Q Consensus 1045 ~LA 1047 (1403)
.|.
T Consensus 179 ~lm 181 (361)
T cd09239 179 SLM 181 (361)
T ss_pred HHH
Confidence 544
No 369
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=81.62 E-value=17 Score=45.20 Aligned_cols=99 Identities=15% Similarity=0.166 Sum_probs=74.0
Q ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC
Q 000589 1041 NCCRYLAMVLY-HAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD 1119 (1403)
Q Consensus 1041 ~a~~~LA~iy~-~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d 1119 (1403)
+.+.++|..|+ .+|+..+|..++..|+-..- +|.. -.++..||.++.+.|...+|--.+..|+. +
T Consensus 213 w~lH~~as~YWR~~G~~~~A~~Ca~~a~hf~~-----~h~k-di~lLSlaTiL~RaG~sadA~iILhAA~~--------d 278 (886)
T KOG4507|consen 213 WVLHNMASFYWRIKGEPYQAVECAMRALHFSS-----RHNK-DIALLSLATVLHRAGFSADAAVILHAALD--------D 278 (886)
T ss_pred HHHHHHHHHHHHHcCChhhhhHHHHHHhhhCC-----cccc-cchhhhHHHHHHHcccccchhheeehhcc--------C
Confidence 34455555554 57999999999999987742 2222 23577899999999999999888766664 3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.+....-++.+|.+|..+++|.....+|..+.+.
T Consensus 279 A~~~t~n~y~l~~i~aml~~~N~S~~~ydha~k~ 312 (886)
T KOG4507|consen 279 ADFFTSNYYTLGNIYAMLGEYNHSVLCYDHALQA 312 (886)
T ss_pred CccccccceeHHHHHHHHhhhhhhhhhhhhhhcc
Confidence 3445555888999999999999999888877764
No 370
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=81.34 E-value=48 Score=40.45 Aligned_cols=146 Identities=15% Similarity=0.024 Sum_probs=81.3
Q ss_pred CchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHH--HHHHhcCCHHHHHHHHHHHHHHH
Q 000589 993 PICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLA--MVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 993 ~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA--~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
|....+......+..+++.++|..|..++...... +. + ... ...+..|+ ..++..-++.+|.+++++.+...
T Consensus 126 p~~~~~~~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~-~-~~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~ 199 (379)
T PF09670_consen 126 PYEVFGDREWRRAKELFNRYDYGAAARILEELLRR---LP-G-REE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRD 199 (379)
T ss_pred HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CC-c-hhh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence 33444566777888999999999999999998764 21 1 122 44555554 45577889999999999877642
Q ss_pred HHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1071 ERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1071 er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
.. -......+..+..+. ++...+...............+.....+...|.--...|+|+.|+..+-++
T Consensus 200 ~~-----l~~~~~~l~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~ll~dLl~NA~RRa~~gryddAvarlYR~ 267 (379)
T PF09670_consen 200 KA-----LNQEREGLKELVEVL-------KALESILSALEDKKQRQKKLYYALLADLLANAERRAAQGRYDDAVARLYRA 267 (379)
T ss_pred hh-----hHhHHHHHHHHHHHH-------HHHHhhccchhhhhccccccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 11 000111111121111 122222122111111000001223333444444445689999999999999
Q ss_pred HHHHHH
Q 000589 1151 LKKNER 1156 (1403)
Q Consensus 1151 L~l~~~ 1156 (1403)
+++..+
T Consensus 268 lEl~~Q 273 (379)
T PF09670_consen 268 LELLAQ 273 (379)
T ss_pred HHHHHH
Confidence 998643
No 371
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=81.34 E-value=29 Score=48.74 Aligned_cols=156 Identities=17% Similarity=0.095 Sum_probs=106.7
Q ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---C-------------------
Q 000589 1039 VANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---N------------------- 1096 (1403)
Q Consensus 1039 ~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---G------------------- 1096 (1403)
.++..-.+|.+|...|++.+|+..|.+|+.+.+.. .|+-..+.++-.++.+..-. |
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 45666779999999999999999999999988764 45555555555554433210 0
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHhhc---CCCCH--HHHHHHHHHHHHHHHc
Q 000589 1097 ----------------------------------QTELALRHMSRALLLLSLSS---GPDHP--DVAATFINVAMMYQDI 1137 (1403)
Q Consensus 1097 ----------------------------------~~~eAl~~l~rAL~l~~~~~---g~d~p--~~a~~~~nLA~iy~~~ 1137 (1403)
-...=...+++++.++.+.. .+..| -...+...++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 01111234455555554432 11122 2456677777777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1138 G--------------------KMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILV 1197 (1403)
Q Consensus 1138 g--------------------~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~ 1197 (1403)
. .-.++..++.+++.+..... ...+...+|..+|.+|...|-..++.-+++.++..+-
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 7 78888999999988765433 3456678999999999999999999989988887664
Q ss_pred H
Q 000589 1198 K 1198 (1403)
Q Consensus 1198 ~ 1198 (1403)
.
T Consensus 477 ~ 477 (1185)
T PF08626_consen 477 P 477 (1185)
T ss_pred c
Confidence 4
No 372
>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway. To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].
Probab=81.24 E-value=1.7e+02 Score=41.35 Aligned_cols=155 Identities=17% Similarity=0.102 Sum_probs=108.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---C-------------------
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---G------------------- 1054 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---G------------------- 1054 (1403)
.++..-.+|.+++..|++.+|+..|.+|+.+.+.. .|+-..+.++-.++.+.... |
T Consensus 241 ~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~--~D~lW~a~alEg~~~~~~l~~~~~~~~qip~i~~~~~~~~~~~ 318 (1185)
T PF08626_consen 241 KGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSS--NDYLWLASALEGIAVCLLLLSWLGMDFQIPQICSPLCPISSST 318 (1185)
T ss_pred hhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhc--CcHhhhHHHHHHHHHHHHHHhccCCCccccchhcccCCCCCcc
Confidence 46666778999999999999999999999998774 45556666666655433211 1
Q ss_pred ----------------------------------CHHHHHHHHHHHHHHHHHhc---CCCChh--HHHHHHHHHHHHHHC
Q 000589 1055 ----------------------------------DMAGAIMQQHKELIINERCL---GLDHPD--TAHSYGNMALFYHGL 1095 (1403)
Q Consensus 1055 ----------------------------------~~~eAi~~~~kAL~i~er~l---g~d~p~--~~~a~~nLA~~~~~~ 1095 (1403)
-...=.+.+.+++.++.+.. ..-.|. ...+...++.++...
T Consensus 319 ~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~~~~~~~p~lv~~E~~lr~~~~l~~~ 398 (1185)
T PF08626_consen 319 SSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTNDTSEYVPQLVYSEACLRFARFLVAQ 398 (1185)
T ss_pred CccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhccccccCcchHHHHHHHHHHHHHHHh
Confidence 01222345566666665553 111232 345566677777777
Q ss_pred C--------------------CHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1096 N--------------------QTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1096 G--------------------~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
. .-.++..++.+++.+....+ +..+.+.+|..+|.+|..+|-..++--+++.++....
T Consensus 399 ~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l--~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l~~~~~ 476 (1185)
T PF08626_consen 399 HLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDL--SVEDQIRIYSGLASVYGSLGFHRKKAFVLRELAVQLV 476 (1185)
T ss_pred hcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhC--CHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhc
Confidence 6 77888889999988754332 3466789999999999999999999989888887664
No 373
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=81.24 E-value=2.1e+02 Score=39.16 Aligned_cols=59 Identities=15% Similarity=0.241 Sum_probs=30.2
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1135 QDIGKMDTALRYLQEALKKNERLLG--EEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTY 1193 (1403)
Q Consensus 1135 ~~~g~~deAl~~lekAL~l~~~~~G--~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl 1193 (1403)
.+.|.|++|+.+|.--.+..+..+. .+|...-.-+..-|..|...|+.++|+..|+.+.
T Consensus 919 ~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~ 979 (1265)
T KOG1920|consen 919 KKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECG 979 (1265)
T ss_pred HhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhc
Confidence 3556777777766544433322210 0111111123344666777777777777776553
No 374
>cd09242 BRO1_ScBro1_like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Bro1 and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Rim20 (also known as PalA), Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1 participates in endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: Snf7 in the
Probab=81.18 E-value=67 Score=38.74 Aligned_cols=74 Identities=20% Similarity=0.139 Sum_probs=41.6
Q ss_pred CCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhc--------CCCC
Q 000589 974 TPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVT--------GPMH 1036 (1403)
Q Consensus 974 ~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~--------g~~~ 1036 (1403)
.+|.+.|...--..+....-....+..++++|-++.+.+ .+..|..+|++|--+++-+. ...+
T Consensus 83 v~F~W~d~~~~~~~~~~~sl~fEka~VLfNiaal~s~~A~~~~~~~~~~~K~A~~~fq~AAG~f~~l~e~~~~~ps~Dl~ 162 (348)
T cd09242 83 VDFTWYDAFYKSKKVKQHSLAFEKASVLFNIGALLSQLAAEKYREDEDDLKEAITNLQQAAGCFQYINENFLHAPSVDLQ 162 (348)
T ss_pred ceeeeeecCCCCCceeecchHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccCC
Confidence 345555543311122233334456788888888776543 46778888888877765432 1234
Q ss_pred HHHHHHHHHHH
Q 000589 1037 REVANCCRYLA 1047 (1403)
Q Consensus 1037 p~~a~a~~~LA 1047 (1403)
+.+..++..|.
T Consensus 163 ~~~l~~L~~lm 173 (348)
T cd09242 163 QENVKFLVKLM 173 (348)
T ss_pred HHHHHHHHHHH
Confidence 55555555544
No 375
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=81.03 E-value=12 Score=39.67 Aligned_cols=89 Identities=18% Similarity=0.132 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~l 1074 (1403)
......+.++..+-...++.+++..++.- +..+ .|.....-..-|+++...|+|.+|+.+++....
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~A-LrvL-------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDA-LRVL-------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHH-HHHh-------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 34466788888888899999998888754 4432 566677778889999999999999999998643
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTE 1099 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~ 1099 (1403)
+.+....+--.++.|++.+++.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 24555566667889998888854
No 376
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=80.13 E-value=22 Score=43.33 Aligned_cols=121 Identities=15% Similarity=0.078 Sum_probs=76.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCccHHHHHhhhhhhhhcCCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 947 KKVSVMRNLCQKVGISVTARKYDFNAATPFETSDILNLQPVVKHSVPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFS 1026 (1403)
Q Consensus 947 ~~~~lLr~i~~k~Giql~~~~Y~f~~~~~f~~~dI~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~ 1026 (1403)
..+.+|..+..+.+|.-....+.-+. .++...+-..-.++++.++. -++..+.+++...|+|..|+..+.-.--
T Consensus 77 ~VLnvL~sLv~kS~I~e~l~~~~~~~-~~~~~~~~~g~~~l~~~LGY-----FSligLlRvh~LLGDY~~Alk~l~~idl 150 (404)
T PF10255_consen 77 SVLNVLYSLVDKSQINEQLEAEKRGE-DPDEVAGEYGSSPLYKMLGY-----FSLIGLLRVHCLLGDYYQALKVLENIDL 150 (404)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccC-CchhhhcccccccHHHHhhH-----HHHHHHHHHHHhccCHHHHHHHhhccCc
Confidence 44667777777777755444332221 12211111133344444432 3355578899999999999988754311
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Q 000589 1027 ILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERC 1073 (1403)
Q Consensus 1027 l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~ 1073 (1403)
-...++....+-....++.+|.+|+.+++|.+|+..+...+....+.
T Consensus 151 ~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 151 NKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred ccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 11112333344556789999999999999999999999999877664
No 377
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=79.25 E-value=2.2 Score=30.13 Aligned_cols=29 Identities=31% Similarity=0.565 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
.++.++|.++..++++++|+.+|++++++
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 35789999999999999999999999875
No 378
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.19 E-value=1.5e+02 Score=40.24 Aligned_cols=145 Identities=21% Similarity=0.183 Sum_probs=95.5
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHH------HhcCCH----HHHHHHHHH
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVL------YHAGDM----AGAIMQQHK 1065 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy------~~~G~~----~eAi~~~~k 1065 (1403)
...-.-+.+|.+|...|...+|+.+|.+|.+-. |.. .++..+..-. ...|+. ..|..||.+
T Consensus 918 lk~v~rfmlg~~yl~tge~~kAl~cF~~a~Sg~----ge~-----~aL~~lv~~~~p~~~sv~dG~t~s~e~t~lhYYlk 988 (1480)
T KOG4521|consen 918 LKPVIRFMLGIAYLGTGEPVKALNCFQSALSGF----GEG-----NALRKLVYFLLPKRFSVADGKTPSEELTALHYYLK 988 (1480)
T ss_pred hHHHHHHhhheeeecCCchHHHHHHHHHHhhcc----ccH-----HHHHHHHHHhcCCCCchhcCCCCCchHHHHHHHHH
Confidence 334456678999999999999999999998753 211 1333222111 022322 246788888
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1066 ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1066 AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
+++++++. +-.+.+..+..+|++- ++++.|..+.++.++=.-+..+|.+-+|..
T Consensus 989 v~rlle~h----------------------n~~E~vcQlA~~AIe~----l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ 1042 (1480)
T KOG4521|consen 989 VVRLLEEH----------------------NHAEEVCQLAVKAIEN----LPDDNPSVALISTTVFNHHLDLGHWFQAYK 1042 (1480)
T ss_pred HHHHHHHh----------------------ccHHHHHHHHHHHHHh----CCCcchhHHHHHHHHHHhhhchhhHHHHHH
Confidence 88887653 2335555566666653 467788888888888888888998888876
Q ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHH
Q 000589 1146 YLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKL 1184 (1403)
Q Consensus 1146 ~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~e 1184 (1403)
.+-+- ++....-.++..|-.++...|.++.
T Consensus 1043 ai~~n---------pdserrrdcLRqlvivLfecg~l~~ 1072 (1480)
T KOG4521|consen 1043 AILRN---------PDSERRRDCLRQLVIVLFECGELEA 1072 (1480)
T ss_pred HHHcC---------CcHHHHHHHHHHHHHHHHhccchHH
Confidence 55432 2333445677888888888887653
No 379
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=79.17 E-value=50 Score=38.68 Aligned_cols=132 Identities=16% Similarity=0.153 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000589 1015 SEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG 1094 (1403)
Q Consensus 1015 eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~ 1094 (1403)
++-++-+.+.++-.++..|. .+...++.+.|..|.+.|+-+.|.+.+++...-.-.. | ...+..-+...||.+|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~-g-~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL-G-HKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc-c-cchhhHHHHHHHHHhhcc
Confidence 34455556666665554443 4778999999999999999999999998876543221 1 234566777788888865
Q ss_pred CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1095 LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1095 ~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.. ---+..++|-.+.++ |.|....-.....-|.......+|.+|-.+|-.++..+.
T Consensus 157 ~~---lV~~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTFt 212 (393)
T KOG0687|consen 157 HD---LVTESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTFT 212 (393)
T ss_pred HH---HHHHHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHccccc
Confidence 43 333444444444444 333333333344456667777888888888888776543
No 380
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=79.03 E-value=1.8 Score=51.89 Aligned_cols=136 Identities=17% Similarity=0.068 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHhh----cCC--CCHHHHHHHHHH----HHHHHHcCCHHHHHHHHHHH
Q 000589 1082 AHSYGNMALFYHG-LNQTELALRHMSRALLLLSLS----SGP--DHPDVAATFINV----AMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~-~G~~~eAl~~l~rAL~l~~~~----~g~--d~p~~a~~~~nL----A~iy~~~g~~deAl~~lekA 1150 (1403)
..++-.||..|.. ..+.-.|+.+++++++....- ... ..|..+.-+... ...-.-.++.+ .+--++
T Consensus 245 iealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmqa 321 (615)
T KOG0508|consen 245 IEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQA 321 (615)
T ss_pred HHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHHH
Confidence 4444555555432 235677888888888765541 000 122222222111 11111222222 223468
Q ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Q 000589 1151 LKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMR 1220 (1403)
Q Consensus 1151 L~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r 1220 (1403)
|-+.++++|+.|+++.......|-+|..+|+++.-+.+++-|+.+.++.+.|-.|.+..++...+.++..
T Consensus 322 LiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS~ 391 (615)
T KOG0508|consen 322 LIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFSF 391 (615)
T ss_pred HHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHHH
Confidence 8888999999999998888888999999999999999999999999999999999999999988887743
No 381
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=78.91 E-value=34 Score=41.18 Aligned_cols=106 Identities=13% Similarity=0.068 Sum_probs=80.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCC------CCHHH----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGP------MHREV----ANCCRYLAMVLYHAGDMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~------~~p~~----a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~e 1071 (1403)
+.-|..++.+++|..|.--|..||+++...... ...+. ..+...|..||..+++.+.|+....+.|.+
T Consensus 180 L~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l-- 257 (569)
T PF15015_consen 180 LKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL-- 257 (569)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc--
Confidence 334566677788888888888888877653211 11122 234467899999999999999999999887
Q ss_pred HhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1072 RCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1072 r~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
+|....-+...|.++..+.+|.+|.+-+.-|..++...
T Consensus 258 ------nP~~frnHLrqAavfR~LeRy~eAarSamia~ymywl~ 295 (569)
T PF15015_consen 258 ------NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYWLS 295 (569)
T ss_pred ------CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 57777778888999999999999999988888777554
No 382
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=78.81 E-value=42 Score=39.31 Aligned_cols=131 Identities=15% Similarity=0.107 Sum_probs=82.3
Q ss_pred HHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1057 AGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1057 ~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
++-++-+.++++-.++.+|. .+...++.+.|.+|.+.|+-+.|++.+.+..+-.-.. ....++.-+...||..|..
T Consensus 81 eeki~eld~~iedaeenlGE--~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~--g~kiDVvf~~iRlglfy~D 156 (393)
T KOG0687|consen 81 EEKIKELDEKIEDAEENLGE--SEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSL--GHKIDVVFYKIRLGLFYLD 156 (393)
T ss_pred HHHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhc--ccchhhHHHHHHHHHhhcc
Confidence 34445555556555555553 5678899999999999999999999998877644332 2345666777888888866
Q ss_pred cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1137 IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1137 ~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
..-.. +.+++|-.+.++ |.+....-..-..-|...+...+|.+|-.++-.++..|
T Consensus 157 ~~lV~---~~iekak~liE~--GgDWeRrNRlKvY~Gly~msvR~Fk~Aa~Lfld~vsTF 211 (393)
T KOG0687|consen 157 HDLVT---ESIEKAKSLIEE--GGDWERRNRLKVYQGLYCMSVRNFKEAADLFLDSVSTF 211 (393)
T ss_pred HHHHH---HHHHHHHHHHHh--CCChhhhhhHHHHHHHHHHHHHhHHHHHHHHHHHcccc
Confidence 54444 344445455444 22222222222334555566677888877777766544
No 383
>smart00101 14_3_3 14-3-3 homologues. 14-3-3 homologues mediates signal transduction by binding to phosphoserine-containing proteins. They are involved in growth factor signalling and also interact with MEK kinases.
Probab=78.75 E-value=1.3e+02 Score=34.46 Aligned_cols=178 Identities=15% Similarity=0.054 Sum_probs=98.7
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH-HCCCHHHHHHHHHHHHHHHHhhcCCCCH
Q 000589 1043 CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYH-GLNQTELALRHMSRALLLLSLSSGPDHP 1121 (1403)
Q Consensus 1043 ~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~-~~G~~~eAl~~l~rAL~l~~~~~g~d~p 1121 (1403)
+..+|.+.-+.++|++.+.+..+++.+.. . ...+..-.+.|+.+|- ..|....+.+.+.. ++......|. .
T Consensus 4 ~v~~Aklaeq~eRyddm~~~mk~~~~~~~----~-~eLt~EERnLLSvayKn~i~~~R~s~R~i~s-ie~ke~~~~~--~ 75 (244)
T smart00101 4 NVYMAKLAEQAERYEEMVEFMEKVAKTVD----S-EELTVEERNLLSVAYKNVIGARRASWRIISS-IEQKEESRGN--E 75 (244)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhhcC----C-ccCCHHHHHHHHHHHhhhhcccHHHHHHHhH-HHHhhhccCc--h
Confidence 34578888889999999999999877421 0 0122333455565553 34666666666554 2222111121 1
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCc---HHHHHHHHHHHHHHHHc-----CC-----HHHHHHH
Q 000589 1122 DVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH---IQTAVCYHALAIAFNCM-----GA-----FKLSHQH 1188 (1403)
Q Consensus 1122 ~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~---~~~a~~~~~LA~~y~~~-----Gd-----~~eAi~~ 1188 (1403)
.. ..+..-|.. .=-++=..+....+.+....+-+.. ......+-..|..|... |+ .+.|.+.
T Consensus 76 ~~----~~~~~~yr~-kie~EL~~iC~eil~lid~~Lip~~~~~eskVFy~KmKGDYyRYlaE~~~~~e~~~~~~~a~~a 150 (244)
T smart00101 76 DH----VASIKEYRG-KIETELSKICDGILKLLESHLIPSASAAESKVFYLKMKGDYHRYLAEFKTGAERKEAAENTLVA 150 (244)
T ss_pred HH----HHHHHHHHH-HHHHHHHHHHHHHHHHHHHhCccccCcHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH
Confidence 11 011111110 0012333455566666554433321 11222223334333322 22 4588999
Q ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1189 EKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1189 lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
|++|+++....+.+.||-..-...+.+.+| +.-.++.++|+.+..
T Consensus 151 Y~~A~e~a~~~L~pt~PirLgLaLN~SVF~-----yEI~~~~~~A~~lAk 195 (244)
T smart00101 151 YKSAQDIALAELPPTHPIRLGLALNFSVFY-----YEILNSPDRACNLAK 195 (244)
T ss_pred HHHHHHHHHccCCCCCHHHHHHHHHHHHHH-----HHHcCCHHHHHHHHH
Confidence 999999988889999998888777777776 356677777776665
No 384
>cd01774 Faf1_like2_UBX Faf1 ike-2 UBX domain. Faf1_like2 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=78.62 E-value=4.9 Score=38.04 Aligned_cols=46 Identities=17% Similarity=0.211 Sum_probs=38.4
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
...|.|++|+|+.++-.+..+++|++|+.++...+. .-.+|.|..+
T Consensus 4 ~~~I~iRlp~G~Rl~rrF~~~~tl~~l~~fv~~~~~--~~~~f~L~t~ 49 (85)
T cd01774 4 TVKIVFKLPNGTRVERRFLFTQSLRVIHDFLFSLKE--TPEKFQIVTN 49 (85)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhCCC--CCCcEEEecC
Confidence 468999999999999999999999999999976654 2367777754
No 385
>KOG0508 consensus Ankyrin repeat protein [General function prediction only]
Probab=77.99 E-value=2.8 Score=50.44 Aligned_cols=136 Identities=20% Similarity=0.195 Sum_probs=93.3
Q ss_pred HHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHHhc----C--CCCHHHHHHHHHHH----HHHHhcCCHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAE-GLLSEAYTLFSEAFSILQQVT----G--PMHREVANCCRYLA----MVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~-G~~eeA~~~l~eAL~l~~~i~----g--~~~p~~a~a~~~LA----~iy~~~G~~~eAi~~~~k 1065 (1403)
..+++--+|..|... .+.-.|+.++.++++...+-. . +..|..+.-|.... .+-...++.+ +.--+
T Consensus 244 riealEllGat~~dkk~D~~~al~~w~~aMe~r~~~~e~~~e~e~~~p~~ay~~~re~~~~~elE~lv~D~d---~~Rmq 320 (615)
T KOG0508|consen 244 RIEALELLGATYVDKKRDLLGALKYWRRAMEERESDGESILEKEPLEPVLAYGYGREVNNREELEELVEDPD---EMRMQ 320 (615)
T ss_pred HHHHHHHhcccccchhHHHHHHHHHHHHHHHhhhhccccccccCCCCchhhhhhhhhcCCHHHHHHHhcChH---HHHHH
Confidence 345555567666543 357778999999988765511 0 11222222111111 1111112222 22346
Q ss_pred HHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000589 1066 ELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQ 1135 (1403)
Q Consensus 1066 AL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~ 1135 (1403)
++.+.++++|++|+++.......|-+|..+|+++..++++..|+.+.++.+.+-.|.++..+...+.++.
T Consensus 321 aLiirerILgpsh~d~sYyir~rgavyad~g~~~rCi~LWkyAL~mqQk~l~PlspmT~ssllsFaelFS 390 (615)
T KOG0508|consen 321 ALIIRERILGPSHPDVSYYIRYRGAVYADSGEFERCIRLWKYALDMQQKNLEPLSPMTASSLLSFAELFS 390 (615)
T ss_pred HHHHHHHHhCCCCCCceeEEEeeeeeecCCccHHHHHHHHHHHHHHHHhhcCCCCcccHHHHHHHHHHHH
Confidence 8889999999999998877777899999999999999999999999999999989999888888887654
No 386
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=77.94 E-value=95 Score=37.93 Aligned_cols=138 Identities=14% Similarity=0.079 Sum_probs=77.7
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH--HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV--AMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL--A~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
-....+.-+++.++|..|...+...... +.+. .. ...+..| |..++..-++.+|.++++..+......
T Consensus 133 ~~~~~a~~l~n~~~y~aA~~~l~~l~~r---l~~~--~~-~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~~~~~l---- 202 (379)
T PF09670_consen 133 REWRRAKELFNRYDYGAAARILEELLRR---LPGR--EE-YQRYKDLCEGYDAWDRFDHKEALEYLEKLLKRDKAL---- 202 (379)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHh---CCch--hh-HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhhhh----
Confidence 4556777888999999999999997753 2121 22 3445555 455567788999999999887643210
Q ss_pred cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHH
Q 000589 1162 HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQK 1241 (1403)
Q Consensus 1162 ~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qk 1241 (1403)
......+..+..+.. +...+.......... ..++ .+..+..++..+.....+|+|+.|+..+. +
T Consensus 203 -~~~~~~l~~~~~~~~-------~~~~~~~~~~~~~~~--~~~~----~~~ll~dLl~NA~RRa~~gryddAvarlY--R 266 (379)
T PF09670_consen 203 -NQEREGLKELVEVLK-------ALESILSALEDKKQR--QKKL----YYALLADLLANAERRAAQGRYDDAVARLY--R 266 (379)
T ss_pred -HhHHHHHHHHHHHHH-------HHHhhccchhhhhcc--cccc----HHHHHHHHHHHHHHHHhcCCHHHHHHHHH--H
Confidence 011111112221111 111111111111000 0001 44556666655666678999999998777 7
Q ss_pred HHHHHh
Q 000589 1242 AIDILK 1247 (1403)
Q Consensus 1242 ALei~~ 1247 (1403)
+++++.
T Consensus 267 ~lEl~~ 272 (379)
T PF09670_consen 267 ALELLA 272 (379)
T ss_pred HHHHHH
Confidence 777654
No 387
>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=77.58 E-value=30 Score=41.63 Aligned_cols=109 Identities=12% Similarity=0.004 Sum_probs=77.3
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
.+-.++..+|.-|...|+++.|+..|-++-..+.. ...++..+.|+-.+-..+|+|..-..+..+|.........
T Consensus 148 siRra~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs-----~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~ 222 (466)
T KOG0686|consen 148 SIRRALEDLGDHYLDCGQLDNALRCYSRARDYCTS-----AKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANEN 222 (466)
T ss_pred HHHHHHHHHHHHHHHhccHHHHHhhhhhhhhhhcc-----hHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhh
Confidence 45678999999999999999999999998776543 3567888888888888999999998888888764200000
Q ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
......+.+...-|.+...+++|..|..+|-.+.
T Consensus 223 ~~q~v~~kl~C~agLa~L~lkkyk~aa~~fL~~~ 256 (466)
T KOG0686|consen 223 LAQEVPAKLKCAAGLANLLLKKYKSAAKYFLLAE 256 (466)
T ss_pred HHHhcCcchHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 0000112234445555666679999988887654
No 388
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=77.47 E-value=9.4 Score=41.89 Aligned_cols=100 Identities=17% Similarity=0.172 Sum_probs=66.1
Q ss_pred HHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH
Q 000589 1028 LQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSR 1107 (1403)
Q Consensus 1028 ~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~r 1107 (1403)
.++.-+..+|..+. .++.+-.-++|...|-++ -|...-+++.....||.+|. ..+.++|+.++.+
T Consensus 101 ~~~tk~S~dP~llY-------y~Wsr~~d~~A~~~fL~~-------E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~ 165 (203)
T PF11207_consen 101 QEETKNSQDPYLLY-------YHWSRFGDQEALRRFLQL-------EGTPELETAELQYALATYYT-KRDPEKTIQLLLR 165 (203)
T ss_pred HHHHccCCCccHHH-------HHhhccCcHHHHHHHHHH-------cCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHH
Confidence 33444556665422 223332335565544432 34444566778888998887 6789999999999
Q ss_pred HHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1108 ALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRY 1146 (1403)
Q Consensus 1108 AL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~ 1146 (1403)
++++.. +++.....++..||.+|..+|+++.|--+
T Consensus 166 ~L~l~~----~~~~~n~eil~sLas~~~~~~~~e~AYiw 200 (203)
T PF11207_consen 166 ALELSN----PDDNFNPEILKSLASIYQKLKNYEQAYIW 200 (203)
T ss_pred HHHhcC----CCCCCCHHHHHHHHHHHHHhcchhhhhhh
Confidence 999853 33233456688999999999999988543
No 389
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=77.29 E-value=19 Score=38.13 Aligned_cols=89 Identities=16% Similarity=0.098 Sum_probs=68.6
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
......+..+..+-...++.+++..++.-..-+ .|........-|.++...|+|.+|+.+|+.+.+
T Consensus 7 ~~iv~gLie~~~~al~~~~~~D~e~lL~ALrvL--------RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~------ 72 (160)
T PF09613_consen 7 DEIVGGLIEVLSVALRLGDPDDAEALLDALRVL--------RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE------ 72 (160)
T ss_pred HHHHHHHHHHHHHHHccCChHHHHHHHHHHHHh--------CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc------
Confidence 456677788888888899999998888755543 366667778889999999999999999998654
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFK 1183 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~ 1183 (1403)
..+....+--.++.|+..+||.+
T Consensus 73 --~~~~~p~~kALlA~CL~~~~D~~ 95 (160)
T PF09613_consen 73 --RAPGFPYAKALLALCLYALGDPS 95 (160)
T ss_pred --cCCCChHHHHHHHHHHHHcCChH
Confidence 23444555667888888888864
No 390
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=77.24 E-value=2.7 Score=29.69 Aligned_cols=29 Identities=21% Similarity=0.186 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.++..+|.++..++++++|+..+++++.+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~ 30 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALEL 30 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 46789999999999999999999999875
No 391
>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal
Probab=77.21 E-value=32 Score=41.41 Aligned_cols=101 Identities=18% Similarity=0.193 Sum_probs=74.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCC-----hh-----HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhc
Q 000589 1047 AMVLYHAGDMAGAIMQQHKELIINERCLGLDH-----PD-----TAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSS 1116 (1403)
Q Consensus 1047 A~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~-----p~-----~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~ 1116 (1403)
|..++++++|..|..-|+.|++++.+..-... ++ ...+...|..||..+++.+.|+.+..+.+.+
T Consensus 183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~l----- 257 (569)
T PF15015_consen 183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINL----- 257 (569)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhc-----
Confidence 45567778888888888888887765321111 11 1233457899999999999999999998864
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1117 GPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1117 g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
+|....-....|.++..+.+|.+|-+.+.-|.-++-
T Consensus 258 ---nP~~frnHLrqAavfR~LeRy~eAarSamia~ymyw 293 (569)
T PF15015_consen 258 ---NPSYFRNHLRQAAVFRRLERYSEAARSAMIADYMYW 293 (569)
T ss_pred ---CcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 466666677889999999999999988877766553
No 392
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=76.86 E-value=68 Score=34.50 Aligned_cols=148 Identities=16% Similarity=0.116 Sum_probs=99.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHH
Q 000589 1005 GKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHS 1084 (1403)
Q Consensus 1005 G~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a 1084 (1403)
|..|++.+.-..+-+.|..||++... +..++|+.-|... ++..-...| ..+
T Consensus 46 gy~yw~~s~as~sgd~flaAL~lA~~-----------------------~k~d~Alaaf~~l----ektg~g~Yp--vLA 96 (221)
T COG4649 46 GYTYWQTSRASKSGDAFLAALKLAQE-----------------------NKTDDALAAFTDL----EKTGYGSYP--VLA 96 (221)
T ss_pred eeehhcccccccchHHHHHHHHHHHc-----------------------CCchHHHHHHHHH----HhcCCCcch--HHH
Confidence 55667777777777777777776432 3445555544432 222111222 345
Q ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCc
Q 000589 1085 YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVA--ATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH 1162 (1403)
Q Consensus 1085 ~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a--~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~ 1162 (1403)
.+..|.+....|+...|..+|..+-.- ...|... .+...-|.++...|-|++-.. ..+.+-++.+
T Consensus 97 ~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~rd~ARlraa~lLvD~gsy~dV~s-------rvepLa~d~n 163 (221)
T COG4649 97 RMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIGRDLARLRAAYLLVDNGSYDDVSS-------RVEPLAGDGN 163 (221)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchhhHHHHHHHHHHHhccccHHHHHH-------HhhhccCCCC
Confidence 677888899999999999999886532 1223333 233445677778887775443 3344556778
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1163 IQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1163 ~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
+....+...||..-++.|++..|..+|.+...
T Consensus 164 ~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 164 PMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 88888999999999999999999999987655
No 393
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=76.38 E-value=30 Score=34.38 Aligned_cols=102 Identities=18% Similarity=0.145 Sum_probs=63.7
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHhcCCCCh
Q 000589 1004 MGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA----GDMAGAIMQQHKELIINERCLGLDHP 1079 (1403)
Q Consensus 1004 lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~----G~~~eAi~~~~kAL~i~er~lg~d~p 1079 (1403)
.+.-++..|++-+|+++.+..+..... +......+..-|.+++.+ .+.+-=..|+.-+++-+.+.... +|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h~~-----~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~L-sp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRHGE-----DESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVEL-SP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHccC-----CCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhcc-Ch
Confidence 467789999999999999999887432 222224445556665443 34444444555555554443322 46
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
..+..++.||.-+-..-.|+++..-.++++.+
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Lsv 107 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLSV 107 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence 66777888887766666666666666666643
No 394
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=76.30 E-value=1.7e+02 Score=35.97 Aligned_cols=135 Identities=14% Similarity=0.103 Sum_probs=78.8
Q ss_pred hHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHH--HHHHHHHHH--
Q 000589 996 SEAKNLVEMGKVQLAEGL-LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIM--QQHKELIIN-- 1070 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~-~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~--~~~kAL~i~-- 1070 (1403)
..+..+...|.-++..|. -+.|+.+++.++... +.+. .|.+..- .+-...|.+|+. .+-+.+.+.
T Consensus 377 QLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-----~yD~---ec~n~v~--~fvKq~Y~qaLs~~~~~rLlkLe~f 446 (549)
T PF07079_consen 377 QLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-----NYDI---ECENIVF--LFVKQAYKQALSMHAIPRLLKLEDF 446 (549)
T ss_pred HHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----cccH---HHHHHHH--HHHHHHHHHHHhhhhHHHHHHHHHH
Confidence 346677778888888888 778889888888762 1122 2211111 111112223221 122222221
Q ss_pred HHhcCCCCh--hHHHHHHHH--HHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHH
Q 000589 1071 ERCLGLDHP--DTAHSYGNM--ALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRY 1146 (1403)
Q Consensus 1071 er~lg~d~p--~~~~a~~nL--A~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~ 1146 (1403)
-...|.... .....-+.| |.+++.+|+|.++.-+..-...+ .| ...++..+|.++....+|++|..+
T Consensus 447 i~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--------aP-S~~~~RLlGl~l~e~k~Y~eA~~~ 517 (549)
T PF07079_consen 447 ITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--------AP-SPQAYRLLGLCLMENKRYQEAWEY 517 (549)
T ss_pred HHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--------CC-cHHHHHHHHHHHHHHhhHHHHHHH
Confidence 111222111 111222333 56678999999999887766655 24 456789999999999999999999
Q ss_pred HHH
Q 000589 1147 LQE 1149 (1403)
Q Consensus 1147 lek 1149 (1403)
+..
T Consensus 518 l~~ 520 (549)
T PF07079_consen 518 LQK 520 (549)
T ss_pred HHh
Confidence 875
No 395
>cd01815 BMSC_UbP_N Ubiquitin-like domain of BMSC-UbP. BMSC_UbP (bone marrow stromal cell-derived ubiquitin-like protein) has an N-terminal ubiquitin-like (UBQ) domain and a C-terminal ubiquitin-associated (UBA) domain, a domain architecture similar to those of the UBIN, Chap1, and ubiquilin proteins. This CD represents the N-terminal ubiquitin-like domain.
Probab=76.08 E-value=3.9 Score=37.67 Aligned_cols=55 Identities=18% Similarity=0.224 Sum_probs=45.6
Q ss_pred CCCChHHHHHHHhhhcC-c-ceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 101 NPGDSVMDIRQFLLDAP-E-TCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 101 ~~~~~v~dv~~~l~~~~-~-t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
-++++|.+|++.|.... + .+.--.+.|.|.| ..|+|-..|+++ ||++ +++|.||-
T Consensus 18 ~~~~TV~~LK~kI~~~~~egi~~~dqQrLIy~G-----KiL~D~~TL~dy-gI~~-gstlhLv~ 74 (75)
T cd01815 18 PGGYQVSTLKQLIAAQLPDSLPDPELIDLIHCG-----RKLKDDQTLDFY-GIQS-GSTIHILR 74 (75)
T ss_pred CccCcHHHHHHHHHHhhccCCCChHHeEEEeCC-----cCCCCCCcHHHc-CCCC-CCEEEEEe
Confidence 35799999999999885 3 4446678999999 789999999988 5888 89999984
No 396
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=76.06 E-value=1.9e+02 Score=35.10 Aligned_cols=140 Identities=11% Similarity=-0.079 Sum_probs=94.9
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLD--HPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATF 1127 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d--~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~ 1127 (1403)
++.+.++.+|...-...+.-.. ..... +--.+..|+.+...|...|+...-...+..-+... .++.+....+...
T Consensus 136 l~d~K~~kea~~~~~~~l~~i~-~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtA--tLrhd~e~qavLi 212 (493)
T KOG2581|consen 136 LIDQKEYKEADKISDALLASIS-IQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTA--TLRHDEEGQAVLI 212 (493)
T ss_pred HHhhHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHh--hhcCcchhHHHHH
Confidence 3456788888877766554311 00000 12235677788888888888766666555544433 3455666677777
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1128 INVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1128 ~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
+.|=.+|...+.|+.|..+..++.--- ...+...+..++.+|.+..-+++|..|.+++-+|+...
T Consensus 213 N~LLr~yL~n~lydqa~~lvsK~~~pe----~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rka 277 (493)
T KOG2581|consen 213 NLLLRNYLHNKLYDQADKLVSKSVYPE----AASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKA 277 (493)
T ss_pred HHHHHHHhhhHHHHHHHHHhhcccCcc----ccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhC
Confidence 778889999999999988766543110 01233678888999999999999999999999988753
No 397
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.17 E-value=1.2e+02 Score=32.78 Aligned_cols=131 Identities=11% Similarity=0.025 Sum_probs=93.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
..+.-+-+.+..++|+.-|...-.. .....|.. +....|.+..+.|+-..|+.+|.++-.. ...|...
T Consensus 63 laAL~lA~~~k~d~Alaaf~~lekt----g~g~YpvL--A~mr~at~~a~kgdta~AV~aFdeia~d------t~~P~~~ 130 (221)
T COG4649 63 LAALKLAQENKTDDALAAFTDLEKT----GYGSYPVL--ARMRAATLLAQKGDTAAAVAAFDEIAAD------TSIPQIG 130 (221)
T ss_pred HHHHHHHHcCCchHHHHHHHHHHhc----CCCcchHH--HHHHHHHHHhhcccHHHHHHHHHHHhcc------CCCcchh
Confidence 3445555678899999888765433 22223433 5567889999999999999999886543 1223332
Q ss_pred --HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1083 --HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1083 --~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
.+...-|.++...|.|++-....+ .+.++.+|....+.--||..-++.|++..|..+|.+...
T Consensus 131 rd~ARlraa~lLvD~gsy~dV~srve-------pLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 131 RDLARLRAAYLLVDNGSYDDVSSRVE-------PLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred hHHHHHHHHHHHhccccHHHHHHHhh-------hccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334455777888888887654433 334677888889999999999999999999999998765
No 398
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=74.00 E-value=45 Score=33.20 Aligned_cols=101 Identities=16% Similarity=0.136 Sum_probs=60.0
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1088 MALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDI----GKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1088 LA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~----g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
+|.-++..|++-+|+++.+..+... |.+ .........-|.++..+ .+.+-=..++.-+++.+.+..+ -+|
T Consensus 2 ~A~~~~~rGnhiKAL~iied~i~~h----~~~-~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~-Lsp 75 (111)
T PF04781_consen 2 KAKDYFARGNHIKALEIIEDLISRH----GED-ESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVE-LSP 75 (111)
T ss_pred hHHHHHHccCHHHHHHHHHHHHHHc----cCC-CchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhc-cCh
Confidence 4677889999999999999988653 222 22224455556665443 4555555566666665544322 235
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
..+..++.||.-+.....|+++..-.++++.
T Consensus 76 ~~A~~L~~la~~l~s~~~Ykk~v~kak~~Ls 106 (111)
T PF04781_consen 76 DSAHSLFELASQLGSVKYYKKAVKKAKRGLS 106 (111)
T ss_pred hHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc
Confidence 6677777777665544444555544444443
No 399
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=73.84 E-value=2.1e+02 Score=34.56 Aligned_cols=110 Identities=17% Similarity=0.200 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHHH------HHHHHHHHhhh----cc-----------cCCCccHHH
Q 000589 922 LWSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQK------VGISVTARKYD----FN-----------AATPFETSD 980 (1403)
Q Consensus 922 lw~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~k------~Giql~~~~Y~----f~-----------~~~~f~~~d 980 (1403)
+-..+.+.+...|.++-+......+..+.-||.-+.. .|.....+.|. +. ...+|.+.|
T Consensus 14 ~~~~L~~~I~~~y~~~~~~~~~~~l~~l~~LR~~~~~~~~~~~~~~~~l~~Yy~~L~~l~~rfp~~~~~~~~~v~F~W~d 93 (353)
T cd09246 14 LVSPLRAYISETYSEREAQDAEDDLAELQQLRSEVRTLQEKHAASRELLLRYYRALCAVESRFPISEESGHARVSFSWYD 93 (353)
T ss_pred hHhHHHHHHHHHcCCcCHHHHHHHHHHHHHHHHHhhcCCCCChhHHHHHHHHHHHHHHHHccCCCCcccccccceeEeec
Confidence 3445666666666654445555556666666654321 22222222221 11 123444444
Q ss_pred HHhhhhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHh
Q 000589 981 ILNLQPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQV 1031 (1403)
Q Consensus 981 I~~l~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i 1031 (1403)
...-...+....-....+..+|++|-++.+.+ .+.+|..+|++|--+++-+
T Consensus 94 ~~~~~~~~~~~sl~fEka~vlfNiaal~s~~a~~~~~~~~~glK~A~~~fq~AAG~F~~l 153 (353)
T cd09246 94 AFRPHRKATQANVHFEKAAVLFNLGALSSQLGLQQDRTTAEGIKQACHAFQAAAGAFAHL 153 (353)
T ss_pred cCCCCcceeecchHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 32221222333344456888888888776543 3678888888887666543
No 400
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=73.69 E-value=87 Score=36.45 Aligned_cols=77 Identities=14% Similarity=0.182 Sum_probs=63.4
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Q 000589 1123 VAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGE 1202 (1403)
Q Consensus 1123 ~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~ 1202 (1403)
...++..++..+...|+++.++..+++.+.+ +|..-..|..|-..|...|+...|+..|++........+|.
T Consensus 152 ~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi 223 (280)
T COG3629 152 FIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGI 223 (280)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCC
Confidence 4567778888999999999999999887764 35566678899999999999999999999999887777776
Q ss_pred CCHHH
Q 000589 1203 EDSRT 1207 (1403)
Q Consensus 1203 ~~~~t 1207 (1403)
+....
T Consensus 224 ~P~~~ 228 (280)
T COG3629 224 DPAPE 228 (280)
T ss_pred CccHH
Confidence 65443
No 401
>PF10952 DUF2753: Protein of unknown function (DUF2753); InterPro: IPR020206 This entry represents a group of uncharacterised proteins.
Probab=73.24 E-value=44 Score=33.74 Aligned_cols=74 Identities=12% Similarity=0.046 Sum_probs=58.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCc-------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEH-------IQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~-------~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
+..+|......+++-.|+-+|++|+.+.++...... .......++||..+..+|+.+=.+.|++-|-+.....
T Consensus 4 htllAd~a~~~~~~l~si~hYQqAls~se~~~~~~~~el~dll~i~VisCHNLA~FWR~~gd~~yELkYLqlASE~VltL 83 (140)
T PF10952_consen 4 HTLLADQAFKEADPLRSILHYQQALSLSEEIDESNEIELEDLLTISVISCHNLADFWRSQGDSDYELKYLQLASEKVLTL 83 (140)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHhhHHHHHHHcCChHHHHHHHHHHHHHHHHh
Confidence 567888999999999999999999999887732221 1223467899999999999999999999887765544
Q ss_pred h
Q 000589 1200 L 1200 (1403)
Q Consensus 1200 l 1200 (1403)
.
T Consensus 84 i 84 (140)
T PF10952_consen 84 I 84 (140)
T ss_pred c
Confidence 3
No 402
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=72.81 E-value=2e+02 Score=33.85 Aligned_cols=74 Identities=11% Similarity=0.007 Sum_probs=53.0
Q ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1121 PDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1121 p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
...+.+...||.+|...++|..|-..+.- +..-.-....+.......+..+|.+|...++..+|..+..++--+
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil 173 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPLDTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASIL 173 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCcccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 34677888999999999999999887642 222110000122345667889999999999999999999887543
No 403
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=72.10 E-value=1.8e+02 Score=36.74 Aligned_cols=172 Identities=13% Similarity=-0.031 Sum_probs=98.7
Q ss_pred HHHHHHHHHHHHHHHHHh----cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC-------------
Q 000589 1014 LSEAYTLFSEAFSILQQV----TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL------------- 1076 (1403)
Q Consensus 1014 ~eeA~~~l~eAL~l~~~i----~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~------------- 1076 (1403)
|++|...|.-|+..+.-- .-..+|.....+..+|.+...+|+.+-|..+.+++|-.+++.+-+
T Consensus 254 Yeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cRL~y 333 (665)
T KOG2422|consen 254 YEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCRLPY 333 (665)
T ss_pred HHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhccccccccccccCcc
Confidence 456666666555543210 112467778899999999999999999999999999998887532
Q ss_pred CChhH---HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1077 DHPDT---AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPD-HPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1077 d~p~~---~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d-~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
.+++. ..+++..-..+...|-+..|.++++-.+.+ .+. +|.-+ .+-+-.......+|+==+++++..-.
T Consensus 334 ~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~~--l~~ID~~ALrareYqwiI~~~~~~e~ 406 (665)
T KOG2422|consen 334 IYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLGI--LYLIDIYALRAREYQWIIELSNEPEN 406 (665)
T ss_pred cchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchhH--HHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 11221 122222333445688899999988776654 222 44322 22233333344455444444444322
Q ss_pred HHHHHhCCCcHHHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHH
Q 000589 1153 KNERLLGEEHIQTAVCYHALAIAFNCMGA---FKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1153 l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd---~~eAi~~lkkAl~i~ 1196 (1403)
...-. .-|..+ .-..||..|..... ...|...+.+|+..+
T Consensus 407 ~n~l~---~~PN~~-yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~~~ 449 (665)
T KOG2422|consen 407 MNKLS---QLPNFG-YSLALARFFLRKNEEDDRQSALNALLQALKHH 449 (665)
T ss_pred hccHh---hcCCch-HHHHHHHHHHhcCChhhHHHHHHHHHHHHHhC
Confidence 11110 011111 12345666666555 567888888888763
No 404
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=72.07 E-value=71 Score=41.83 Aligned_cols=56 Identities=18% Similarity=0.137 Sum_probs=39.5
Q ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 1007 VQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 1007 ~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
+++....|+-|+. +.+.. +.+...++.++...|..++..|++++|..+|-+++...
T Consensus 343 iL~kK~ly~~Ai~-------LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~l 398 (933)
T KOG2114|consen 343 ILFKKNLYKVAIN-------LAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFL 398 (933)
T ss_pred HHHHhhhHHHHHH-------HHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccC
Confidence 3444444555444 43332 23344678889999999999999999999999988763
No 405
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=71.62 E-value=14 Score=31.79 Aligned_cols=29 Identities=31% Similarity=0.390 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.+++.||..++.+|+|++|..+.+.++++
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~ 30 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEI 30 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 47889999999999999999999999998
No 406
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=71.15 E-value=1.2e+02 Score=37.85 Aligned_cols=26 Identities=15% Similarity=0.112 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
.|..||.....+|+++-|..+|+++-
T Consensus 349 ~W~~Lg~~AL~~g~~~lAe~c~~k~~ 374 (443)
T PF04053_consen 349 KWKQLGDEALRQGNIELAEECYQKAK 374 (443)
T ss_dssp HHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence 45566666666666666666665543
No 407
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=70.45 E-value=1.4e+02 Score=40.69 Aligned_cols=28 Identities=18% Similarity=0.319 Sum_probs=12.8
Q ss_pred cHHHhHHHHHHHHHHHHHHHHHHHHHhh
Q 000589 941 DARLWVKKVSVMRNLCQKVGISVTARKY 968 (1403)
Q Consensus 941 ~~~~~~~~~~lLr~i~~k~Giql~~~~Y 968 (1403)
++...++.++.+....+++-|....+.|
T Consensus 869 EyLP~L~el~~m~~~~rkF~ID~~L~ry 896 (1265)
T KOG1920|consen 869 EYLPFLNELKKMETLLRKFKIDDYLKRY 896 (1265)
T ss_pred HHHHHHHHHhhchhhhhheeHHHHHHHH
Confidence 3333444444444444555554444444
No 408
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=70.26 E-value=2.5e+02 Score=33.93 Aligned_cols=54 Identities=13% Similarity=0.169 Sum_probs=34.4
Q ss_pred hhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC----------CCCHHHHHHHHHHHH
Q 000589 995 CSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG----------PMHREVANCCRYLAM 1048 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g----------~~~p~~a~a~~~LA~ 1048 (1403)
...+..++++|-++.+.+ .+.+|..+|++|-.+++-+.. ..++.+..++..|..
T Consensus 103 fEka~VLfNigal~sq~a~~~~~~~~~glK~A~~~fq~AAG~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmL 175 (355)
T cd09241 103 FERANILYNLGALYSQLALSENRYTDEGLKRACSYFQASAGCFEYILQHLLPTLSPPPDLDENTLKALESLML 175 (355)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHHHHhcccccCCCCCCCHHHHHHHHHHHH
Confidence 445778888888876543 377888889888776544321 234555666555543
No 409
>PRK10941 hypothetical protein; Provisional
Probab=69.84 E-value=31 Score=39.93 Aligned_cols=82 Identities=17% Similarity=0.193 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcC
Q 000589 1038 EVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSG 1117 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g 1117 (1403)
-+.+.+.+|-.+|...++++.|+.+.+..+.+. |+...-+...|.+|.++|.+..|..-++.-++.+
T Consensus 179 il~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~--------P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~----- 245 (269)
T PRK10941 179 VIRKLLDTLKAALMEEKQMELALRASEALLQFD--------PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQC----- 245 (269)
T ss_pred HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----
Confidence 356778899999999999999999999998872 4444556779999999999999999999988764
Q ss_pred CCCHHHHHHHHHHHH
Q 000589 1118 PDHPDVAATFINVAM 1132 (1403)
Q Consensus 1118 ~d~p~~a~~~~nLA~ 1132 (1403)
++.|....+...+..
T Consensus 246 P~dp~a~~ik~ql~~ 260 (269)
T PRK10941 246 PEDPISEMIRAQIHS 260 (269)
T ss_pred CCchhHHHHHHHHHH
Confidence 556765555444443
No 410
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=68.48 E-value=30 Score=39.90 Aligned_cols=79 Identities=24% Similarity=0.228 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLD 1077 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d 1077 (1403)
...+...++.|...|.+.+|+++.++++.+ +|..-..+..|-.++..+|+--.|+..|++--...++-+|.+
T Consensus 279 ~kllgkva~~yle~g~~neAi~l~qr~ltl--------dpL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~ 350 (361)
T COG3947 279 MKLLGKVARAYLEAGKPNEAIQLHQRALTL--------DPLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGID 350 (361)
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHhhc--------ChhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCC
Confidence 345666788999999999999999999988 677778888899999999999999999999998888888876
Q ss_pred ChhHHHH
Q 000589 1078 HPDTAHS 1084 (1403)
Q Consensus 1078 ~p~~~~a 1084 (1403)
-.+.+.-
T Consensus 351 vddsiee 357 (361)
T COG3947 351 VDDSIEE 357 (361)
T ss_pred cchhHHH
Confidence 5554443
No 411
>KOG3807 consensus Predicted membrane protein ST7 (tumor suppressor in humans) [General function prediction only]
Probab=67.33 E-value=2.6e+02 Score=32.94 Aligned_cols=115 Identities=17% Similarity=0.102 Sum_probs=68.5
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHH
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTA 1082 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~ 1082 (1403)
++-+......+..+-+....+|+++ +++.+.+|..||.-- .--..+|..++++|++..+..+.
T Consensus 189 eIMQ~AWRERnp~~RI~~A~~ALeI--------N~eCA~AyvLLAEEE--a~Ti~~AE~l~k~ALka~e~~yr------- 251 (556)
T KOG3807|consen 189 EIMQKAWRERNPPARIKAAYQALEI--------NNECATAYVLLAEEE--ATTIVDAERLFKQALKAGETIYR------- 251 (556)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHhc--------CchhhhHHHhhhhhh--hhhHHHHHHHHHHHHHHHHHHHh-------
Confidence 3444455566677777778888887 688888888887543 23457888888888887543321
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1083 HSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK 1152 (1403)
Q Consensus 1083 ~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~ 1152 (1403)
-.......|...+|.. + .|......+...||+|..++|+..+|++.++...+
T Consensus 252 -----~sqq~qh~~~~~da~~--r-----------RDtnvl~YIKRRLAMCARklGrlrEA~K~~RDL~k 303 (556)
T KOG3807|consen 252 -----QSQQCQHQSPQHEAQL--R-----------RDTNVLVYIKRRLAMCARKLGRLREAVKIMRDLMK 303 (556)
T ss_pred -----hHHHHhhhccchhhhh--h-----------cccchhhHHHHHHHHHHHHhhhHHHHHHHHHHHhh
Confidence 1111122222222211 0 12223345566778888888888888877776544
No 412
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=67.04 E-value=41 Score=41.15 Aligned_cols=74 Identities=16% Similarity=0.027 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1084 SYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERL 1157 (1403)
Q Consensus 1084 a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~ 1157 (1403)
++..|..++.-+|||..|++.++..---...++..-.+-...+++.+|-+|..+++|.+|++.|...|-...+.
T Consensus 124 SligLlRvh~LLGDY~~Alk~l~~idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~ 197 (404)
T PF10255_consen 124 SLIGLLRVHCLLGDYYQALKVLENIDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRT 197 (404)
T ss_pred HHHHHHHHHHhccCHHHHHHHhhccCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34567788889999999999876532111112223345567889999999999999999999999998766543
No 413
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=66.97 E-value=3.6e+02 Score=39.84 Aligned_cols=110 Identities=13% Similarity=0.054 Sum_probs=80.3
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLS 1115 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~ 1115 (1403)
...++++|..+|++....|.++.|..+.-+|.+.. ...++...|..++..|+-..|+.++++.+.....-
T Consensus 1666 ~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r----------~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1666 KSRLGECWLQSARIARLAGHLQRAQNALLNAKESR----------LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred cchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhcc----------cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 56789999999999999999999999998887652 45678899999999999999999999999775432
Q ss_pred cC-C--------CCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHH
Q 000589 1116 SG-P--------DHPDVAATFINVAMMYQDIGKM--DTALRYLQEALKKNE 1155 (1403)
Q Consensus 1116 ~g-~--------d~p~~a~~~~nLA~iy~~~g~~--deAl~~lekAL~l~~ 1155 (1403)
+- + +......+...++......+++ ..-+.+|..|.++..
T Consensus 1736 ~~~~~~~~p~~~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ 1786 (2382)
T KOG0890|consen 1736 LHTPYTDTPQSVNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILP 1786 (2382)
T ss_pred ccCCccccchhhhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcc
Confidence 11 1 1111223445555555555553 345567777777764
No 414
>cd01771 Faf1_UBX Faf1 UBX domain. Faf1 (fas-associated factor1) is a nucleolar protein that was first identified as an interaction partner of the death receptor Fas. Faf1 contains N-terminal UAS (ubiquitin-associated) and C-terminal UBX (ubiquitin-like) domains and is closely related to other UBA/UBX-containing proteins like p47, Rep8 and SAKS1. Faf1 is thought to be involved in 18S rRNA synthesis and/or 40S ribosomal subunit assembly. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=66.32 E-value=27 Score=32.67 Aligned_cols=46 Identities=17% Similarity=0.208 Sum_probs=37.9
Q ss_pred cccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 83 LYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
...|.|++|+|+.++-.+..++++++|+.++... .+...+|.|.-+
T Consensus 4 ~~~i~iRlP~G~r~~rrF~~t~~L~~l~~fv~~~--~~~~~~f~L~t~ 49 (80)
T cd01771 4 ISKLRVRTPSGDFLERRFLGDTPLQVLLNFVASK--GYPIDEYKLLSS 49 (80)
T ss_pred eEEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhc--CCCCCCEEEecC
Confidence 4678999999999999999999999999999754 233457888644
No 415
>PRK10941 hypothetical protein; Provisional
Probab=66.22 E-value=40 Score=39.07 Aligned_cols=78 Identities=18% Similarity=0.207 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE 1161 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~ 1161 (1403)
...+.||=.+|...++++.|+.+.++.+.+ .+++|. -+...|.+|.++|.+..|+.-|+.-++.+ ++
T Consensus 181 ~Rml~nLK~~~~~~~~~~~AL~~~e~ll~l-----~P~dp~---e~RDRGll~~qL~c~~~A~~DL~~fl~~~-----P~ 247 (269)
T PRK10941 181 RKLLDTLKAALMEEKQMELALRASEALLQF-----DPEDPY---EIRDRGLIYAQLDCEHVALSDLSYFVEQC-----PE 247 (269)
T ss_pred HHHHHHHHHHHHHcCcHHHHHHHHHHHHHh-----CCCCHH---HHHHHHHHHHHcCCcHHHHHHHHHHHHhC-----CC
Confidence 456778899999999999999999999976 355554 46678999999999999999999988876 44
Q ss_pred cHHHHHHHHHH
Q 000589 1162 HIQTAVCYHAL 1172 (1403)
Q Consensus 1162 ~~~~a~~~~~L 1172 (1403)
.|....+...+
T Consensus 248 dp~a~~ik~ql 258 (269)
T PRK10941 248 DPISEMIRAQI 258 (269)
T ss_pred chhHHHHHHHH
Confidence 45544443333
No 416
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=65.97 E-value=2.5e+02 Score=32.33 Aligned_cols=149 Identities=12% Similarity=0.018 Sum_probs=92.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHH-HHHHHHHHHHHHHHHhcCC
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMA-GAIMQQHKELIINERCLGL 1076 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~-eAi~~~~kAL~i~er~lg~ 1076 (1403)
...++.-+..++..|++.-|.++..-.++.+.+...+.+. .....|..++.....-+ +-..+..+|+... ..+.
T Consensus 10 idLL~~Ga~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~---~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS--~~~~ 84 (260)
T PF04190_consen 10 IDLLYSGALILLKHGQYGSGADLALLLIEVYEKSEDPVDE---ESIARLIELISLFPPEEPERKKFIKAAIKWS--KFGS 84 (260)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT---SH---HHHHHHHHHHHHS-TT-TTHHHHHHHHHHHH--HTSS
T ss_pred HHHHHHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhCCCCcchHHHHHHHHHHHH--ccCC
Confidence 3455667788889999999999998888888774333322 23456666666664333 5667778888877 3344
Q ss_pred CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------HHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1077 DHPDTAHSYGNMALFYHGLNQTELALRHMSRA-----------LLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALR 1145 (1403)
Q Consensus 1077 d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rA-----------L~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~ 1145 (1403)
........+..+|..|+..+++.+|..+|-.+ +..|... |. ..+........-..|...++...|..
T Consensus 85 ~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~-~~-~~e~dlfi~RaVL~yL~l~n~~~A~~ 162 (260)
T PF04190_consen 85 YKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK-GY-PSEADLFIARAVLQYLCLGNLRDANE 162 (260)
T ss_dssp -TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH-TS-S--HHHHHHHHHHHHHHTTBHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh-cC-CcchhHHHHHHHHHHHHhcCHHHHHH
Confidence 44455677888999999999999999987332 2222222 21 11222223333456778899999998
Q ss_pred HHHHHHHH
Q 000589 1146 YLQEALKK 1153 (1403)
Q Consensus 1146 ~lekAL~l 1153 (1403)
.+..-++.
T Consensus 163 ~~~~f~~~ 170 (260)
T PF04190_consen 163 LFDTFTSK 170 (260)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 88777665
No 417
>KOG0011 consensus Nucleotide excision repair factor NEF2, RAD23 component [Replication, recombination and repair]
Probab=65.93 E-value=12 Score=43.53 Aligned_cols=76 Identities=16% Similarity=0.239 Sum_probs=63.6
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcc-eeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPET-CFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t-~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
+.||||+-.+..++|-+.|.++|.+|+.-|....+- |.-..-.|.|.| +.|.|-..+.+. ++++++.+.-|+-
T Consensus 1 m~lt~KtL~q~~F~iev~Pe~tV~evK~kIet~~g~dyP~~~QkLIy~G-----kiL~D~~tv~Ey-kv~E~~fiVvMls 74 (340)
T KOG0011|consen 1 MKLTVKTLKQQTFTIEVKPEDTVVEVKKKIETEKGPDYPAEQQKLIYSG-----KILKDETTVGEY-KVKEKKFIVVMLS 74 (340)
T ss_pred CeeEeeeccCceeEeecCcchhHHHHHHHHHhccCCCCchhhheeeecc-----eeccCCcchhhh-ccccCceEEEEEe
Confidence 368999999999999999999999999999887642 545556788999 899999999998 4777688888887
Q ss_pred cCC
Q 000589 163 ALY 165 (1403)
Q Consensus 163 ~~Y 165 (1403)
.+=
T Consensus 75 K~k 77 (340)
T KOG0011|consen 75 KDK 77 (340)
T ss_pred cCc
Confidence 664
No 418
>cd01773 Faf1_like1_UBX Faf1 ike-1 UBX domain. Faf1_like1 is a protein of unknown function with a domain architecture that includes the UAS (ubiquitin-associated) and UBX (ubiquitin-like) domains. This protein is related to other UBA/UBX-containing proteins like Faf1, p47, and SAKS1 and may serve as an adaptor molecule that shuttles proteins to the proteasome for degradation. The UBX domain has a beta-grasp fold similar to that of ubiquitin however, UBX lacks the c-terminal double glycine motif and is thus unlikely to be conjugated to other proteins.
Probab=65.83 E-value=13 Score=35.02 Aligned_cols=45 Identities=4% Similarity=0.113 Sum_probs=36.8
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH 130 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~ 130 (1403)
-.|.|++|+|+.++-.+..+++|++|+.++..... --..|.|.-+
T Consensus 6 t~i~vRlP~G~r~~rrF~~~~~L~~v~~fv~~~g~--~~~~f~L~t~ 50 (82)
T cd01773 6 ARLMLRYPDGKREQIALPEQAKLLALVRHVQSKGY--PNERFELLTN 50 (82)
T ss_pred eEEEEECCCCCEEEEEeCCCCcHHHHHHHHHhcCC--CCCCEEEecC
Confidence 47899999999999999999999999999987643 2256666643
No 419
>KOG1497 consensus COP9 signalosome, subunit CSN4 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=65.67 E-value=2.8e+02 Score=32.73 Aligned_cols=109 Identities=17% Similarity=0.009 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCC---CChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Q 000589 1037 REVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGL---DHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLS 1113 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~---d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~ 1113 (1403)
..++.+...||.+|-..++|..|...+.- +.. ..|. +.......+..+|.+|...++..+|..+..|+--+..
T Consensus 100 Eqv~~irl~LAsiYE~Eq~~~~aaq~L~~-I~~---~tg~~~~d~~~kl~l~iriarlyLe~~d~veae~~inRaSil~a 175 (399)
T KOG1497|consen 100 EQVASIRLHLASIYEKEQNWRDAAQVLVG-IPL---DTGQKAYDVEQKLLLCIRIARLYLEDDDKVEAEAYINRASILQA 175 (399)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHHhc-cCc---ccchhhhhhHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhh
Confidence 45678889999999999999888765432 111 1111 2234567788999999999999999999999865443
Q ss_pred hhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 000589 1114 LSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1114 ~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL 1151 (1403)
.. .+.........-.|.++-..++|-+|-..|.+..
T Consensus 176 ~~--~Ne~Lqie~kvc~ARvlD~krkFlEAAqrYyels 211 (399)
T KOG1497|consen 176 ES--SNEQLQIEYKVCYARVLDYKRKFLEAAQRYYELS 211 (399)
T ss_pred cc--cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 22 2212222333334666666777777666665443
No 420
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=65.64 E-value=6.7 Score=28.14 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHK 1065 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~k 1065 (1403)
.++..||.++..+|++++|...+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 4678899999999999999998763
No 421
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=65.62 E-value=35 Score=29.34 Aligned_cols=30 Identities=20% Similarity=0.301 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
..++.||..+..+|+|++|+.+.+.+|++-
T Consensus 2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~e 31 (53)
T PF14853_consen 2 DCLYYLAIGHYKLGEYEKARRYCDALLEIE 31 (53)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence 357889999999999999999999999874
No 422
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=65.27 E-value=3e+02 Score=32.85 Aligned_cols=92 Identities=13% Similarity=0.166 Sum_probs=64.8
Q ss_pred HHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHH
Q 000589 1092 YHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHA 1171 (1403)
Q Consensus 1092 ~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~ 1171 (1403)
..+.++.++|++++++.++-....-. ...+..+...+|.++...|+..++.+.+...-.......+-. +..-..++.
T Consensus 85 ~~~~~D~~~al~~Le~i~~~~~~~~e--~~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~ 161 (380)
T KOG2908|consen 85 SEQISDKDEALEFLEKIIEKLKEYKE--PDAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYS 161 (380)
T ss_pred HHHhccHHHHHHHHHHHHHHHHhhcc--chhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHH
Confidence 34566999999999999887655421 124667778899999999999999999998888776654433 223334555
Q ss_pred HH-HHHHHcCCHHHHH
Q 000589 1172 LA-IAFNCMGAFKLSH 1186 (1403)
Q Consensus 1172 LA-~~y~~~Gd~~eAi 1186 (1403)
++ ..|...|++..+.
T Consensus 162 lssqYyk~~~d~a~yY 177 (380)
T KOG2908|consen 162 LSSQYYKKIGDFASYY 177 (380)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 55 4555667776443
No 423
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=64.93 E-value=39 Score=35.45 Aligned_cols=88 Identities=14% Similarity=0.090 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Q 000589 996 SEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLG 1075 (1403)
Q Consensus 996 ~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg 1075 (1403)
.....+.++...-...++.+++..++.. +... .|.....-..-|+++...|+|.+|+..++....-
T Consensus 8 ~iv~gLi~~~~~aL~~~d~~D~e~lLdA-LrvL-------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~------ 73 (153)
T TIGR02561 8 RLLGGLIEVLMYALRSADPYDAQAMLDA-LRVL-------RPNLKELDMFDGWLLIARGNYDEAARILRELLSS------ 73 (153)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHh-------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhcc------
Confidence 3455566666677778889888877754 4432 4666677777899999999999999999886543
Q ss_pred CCChhHHHHHHHHHHHHHHCCCHH
Q 000589 1076 LDHPDTAHSYGNMALFYHGLNQTE 1099 (1403)
Q Consensus 1076 ~d~p~~~~a~~nLA~~~~~~G~~~ 1099 (1403)
.+....+...++.|++.+|+.+
T Consensus 74 --~~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 74 --AGAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred --CCCchHHHHHHHHHHHhcCChH
Confidence 2233445556788888888753
No 424
>cd01799 Hoil1_N Ubiquitin-like domain of HOIL1. HOIL1_N HOIL-1 (heme-oxidized IRP2 ubiquitin ligase-1) is an E3 ubiquitin-protein ligase that recognizes heme-oxidized IRP2 (iron regulatory protein2) and is thought to affect the turnover of oxidatively damaged proteins. Hoil-1 has an amino-terminal ubiquitin-like domain as well as an RBR signature consisting of two RING finger domains separated by an IBR/DRIL domain.
Probab=64.79 E-value=15 Score=33.96 Aligned_cols=64 Identities=13% Similarity=0.094 Sum_probs=47.1
Q ss_pred eCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccc-ccccccccccccCCCccEEEE
Q 000589 89 KTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHL-EDYNEISEVADITTGGCTLEM 160 (1403)
Q Consensus 89 ~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l-~~~~e~~~~~~~~~~~~~l~~ 160 (1403)
+.-++..+.|.+.++++|.+|++.|.... ...-.+..| +.| .+| +|...|++. |+...|.+|.|
T Consensus 8 ~~~~~~t~~l~v~~~~TV~~lK~kI~~~~-gip~~~QrL-~~G-----~~L~dD~~tL~~y-gi~~~g~~~~l 72 (75)
T cd01799 8 AQSHTVTIWLTVRPDMTVAQLKDKVFLDY-GFPPAVQRW-VIG-----QRLARDQETLYSH-GIRTNGDSAFL 72 (75)
T ss_pred cccCCCeEEEEECCCCcHHHHHHHHHHHH-CcCHHHEEE-EcC-----CeeCCCcCCHHHc-CCCCCCCEEEE
Confidence 45567889999999999999999998764 345667788 887 556 466777776 67643555554
No 425
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=64.16 E-value=1.3e+02 Score=36.55 Aligned_cols=70 Identities=9% Similarity=-0.047 Sum_probs=48.6
Q ss_pred CCchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 000589 992 VPICSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMV--LYHAGDMAGAIMQQH 1064 (1403)
Q Consensus 992 ~~~~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~i--y~~~G~~~eAi~~~~ 1064 (1403)
+|....+......++.+++.++|..|...|.+++... ..+........|..|+.+ ++..-++++|.++++
T Consensus 124 nP~~v~~~~e~~~~r~l~n~~dy~aA~~~~~~L~~r~---l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 124 DPYNVEGNTEQGYARRAINAFDYLFAHARLETLLRRL---LSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred CHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhcc---cChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3334445555567778999999999999999988652 122233445556666555 467889999999998
No 426
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=64.03 E-value=33 Score=32.85 Aligned_cols=33 Identities=18% Similarity=0.113 Sum_probs=27.2
Q ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1078 HPDTAHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1078 ~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
+|....+.+.+|..+...|++++|++.+..++.
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 577788999999999999999999998877664
No 427
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.83 E-value=2.4e+02 Score=35.85 Aligned_cols=170 Identities=13% Similarity=0.107 Sum_probs=102.2
Q ss_pred CCCHHHHHHHHHHHHHHHHhh----cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC---------
Q 000589 1095 LNQTELALRHMSRALLLLSLS----SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEE--------- 1161 (1403)
Q Consensus 1095 ~G~~~eAl~~l~rAL~l~~~~----~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~--------- 1161 (1403)
...|++|...|.-|....... +-..+|.....+..+|.+...+|+.+-|..+.+++|-.....+.+.
T Consensus 251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR 330 (665)
T KOG2422|consen 251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR 330 (665)
T ss_pred chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence 456778888887777654321 1125788889999999999999999999999999998877664322
Q ss_pred -------cHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhhcHHHH
Q 000589 1162 -------HIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE-DSRTKDSQNWMKTFKMRELQMNVQKQKGQA 1233 (1403)
Q Consensus 1162 -------~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~-~~~t~~a~~~La~l~~r~~~~~~qg~~~eA 1233 (1403)
+.....+++..-.-+...|=+..|.++.+-.+.+ .+. +|.. +...+-.+. ....+|.--
T Consensus 331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsL-----dp~eDPl~--~l~~ID~~A------LrareYqwi 397 (665)
T KOG2422|consen 331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSL-----DPSEDPLG--ILYLIDIYA------LRAREYQWI 397 (665)
T ss_pred CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc-----CCcCCchh--HHHHHHHHH------HHHHhHHHH
Confidence 1223334455556677889999999998877664 232 4432 223333333 333444444
Q ss_pred HHHHHHHHHHHHHhhChH----HHHHHHHHHHhC--ChHHHHHHHHHHHH
Q 000589 1234 FNAASTQKAIDILKAHPD----LIHAFQAVAAAG--GSGNSGASANNSLN 1277 (1403)
Q Consensus 1234 i~~l~~qkALei~~~~p~----~~~a~~~La~~G--~~~eA~~~~ekAL~ 1277 (1403)
++.++.-+...-+...|. ++-++..+..+. .-+.|...+.+|+.
T Consensus 398 I~~~~~~e~~n~l~~~PN~~yS~AlA~f~l~~~~~~~rqsa~~~l~qAl~ 447 (665)
T KOG2422|consen 398 IELSNEPENMNKLSQLPNFGYSLALARFFLRKNEEDDRQSALNALLQALK 447 (665)
T ss_pred HHHHHHHHhhccHhhcCCchHHHHHHHHHHhcCChhhHHHHHHHHHHHHH
Confidence 444442222222223332 233344443222 35667777777776
No 428
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.66 E-value=57 Score=42.61 Aligned_cols=46 Identities=17% Similarity=0.070 Sum_probs=33.7
Q ss_pred HHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1107 RALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1107 rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
-|+.+++.. +.+......++...|..++..|++++|..+|-+++..
T Consensus 352 ~Ai~LAk~~-~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~ 397 (933)
T KOG2114|consen 352 VAINLAKSQ-HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF 397 (933)
T ss_pred HHHHHHHhc-CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc
Confidence 344444332 2334456778888999999999999999999988764
No 429
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=63.42 E-value=32 Score=32.91 Aligned_cols=34 Identities=24% Similarity=0.116 Sum_probs=28.0
Q ss_pred CHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 1036 HREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 1036 ~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
+|.-..+.+.+|..+...|++++|++.+-.++..
T Consensus 18 ~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~ 51 (90)
T PF14561_consen 18 NPDDLDARYALADALLAAGDYEEALDQLLELVRR 51 (90)
T ss_dssp STT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 5667789999999999999999999998877654
No 430
>PF03097 BRO1: BRO1-like domain; InterPro: IPR004328 The BRO1 domain has about 390 residues and occurs in a number of eukaryotic proteins such as yeast BRO1 and human PDCD6IP/Alix that are involved in protein targeting to the vacuole or lysosome. The BRO1 domain of fungal and mammalian proteins binds with multivesicular body components (ESCRT-III proteins) such as yeast Snf7 and mammalian CHMP4b, and can function to target BRO1 domain-containing proteins to endosomes [, , ]. The BRO1 domain has a boomerang shape composed of 14 alpha-helices and 3 beta-sheets. It contains a TPR-like substructure in the central part []. The C terminus is less conserved. This domain is found in a number of signal transduction proteins. The Saccharomyces cerevisiae protein Bro1p is required for sorting endocytic cargo to the lumen of multivesicular bodies (MVBs). Alix appears to be the mammalian orthologue of Bro1p []. Alix is also involved in the ESCRT pathway, which facilitates membrane fission events during enveloped virus budding, multivesicular body formation, and cytokinesis. To promote HIV budding and cytokinesis, the ALIX protein must bind and recruit CHMP4 subunits of the ESCRT-III complex. The Bro1 domain of ALIX binds specifically to C-terminal residues of the human CHMP4 proteins [, ]. Likewise, the Homo sapiens Brox protein has a Bro1 domain. CHMP4 proteins are components of endosomal sorting complex required for transport III, via their Bro1 domains and to play roles in sorting of ubiquitinated cargoes []. Alix also binds to the nucleocapsid (NC) domain of HIV-1 Gag. Alix and the Bro1 domain can be specifically packaged into viral particles via the NC []. Myopic is the Drosophila homologue of the Bro1-domain tyrosine phosphatase HD-PTP, and it promotes the epidermal growth factor receptor (EGFR) signalling []. The Caenorhabditis elegans Bro1-domain protein, ALX-1, interacts with LIN-12/Notch. The EGO-2 protein also contains a Bro1 domain. Notch-type signalling mediates numerous inductive events during development [].; PDB: 2VSV_A 1ZB1_A 3UM3_A 3ULY_A 3R9M_A 3ZXP_A 3UM2_A 3UM0_A 3UM1_D 3RAU_B ....
Probab=63.40 E-value=1.7e+02 Score=35.54 Aligned_cols=126 Identities=22% Similarity=0.235 Sum_probs=68.2
Q ss_pred HHHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHHHH------HHHHHHHhhh----cccC-------CCccHHHHHhh
Q 000589 922 LWSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQKV------GISVTARKYD----FNAA-------TPFETSDILNL 984 (1403)
Q Consensus 922 lw~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~k~------Giql~~~~Y~----f~~~-------~~f~~~dI~~l 984 (1403)
+...+.+.+...| .+.++...+.+..+..+|.-+... ++....+.|. +... ..|.+.|...-
T Consensus 15 ~~~~l~~~i~~~y-~~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~l~~Y~~~L~~l~~~~p~~~~~i~F~W~d~~~~ 93 (377)
T PF03097_consen 15 LKKPLKKYISSHY-GEDPDSFDEDLKELDKLRQDARNPQSPSESGLKLLEEYYPQLESLEKRFPSDQIQISFTWSDSLST 93 (377)
T ss_dssp CHHHHHHHHHHHC-SSCCHCCHHHHHHHHHHHHHHHTSS-SSHHHHHHHHHHHHHHHHHCCCSCSSCCTT-EEEE-TTST
T ss_pred HHHHHHHHHHHHh-CCCHHHHHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHHHHHHhcccccceeeEeeeccccC
Confidence 3445777778888 566666667777777777766443 2222222221 1111 23444333211
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG--------PMHREVANCCRYLA 1047 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g--------~~~p~~a~a~~~LA 1047 (1403)
...+....-....+..++++|-++.+.+ .+.+|..+|++|-.++..+.. ..++....++..+.
T Consensus 94 ~~~~~~~~~~fE~a~vL~N~aa~~s~~a~~~~~~~~~~~k~A~~~fq~AAg~f~~l~~~~~~~~s~Dl~~~~l~~l~~l~ 173 (377)
T PF03097_consen 94 GKPVSQSSLAFEKACVLFNIAALYSQLAASQNRSTDEGLKEACNYFQRAAGIFQYLRENFKDSPSPDLSPEVLSALSNLM 173 (377)
T ss_dssp TSEEEESSHHHHHHHHHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHHHHHHHHHSSS-SSGGGSHHHHHHHHHHH
T ss_pred CCcccchhhHHHHHHHHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCHHHHHHHHHHH
Confidence 1122223333456888889888876543 366788888888777654421 13445555555554
Q ss_pred H
Q 000589 1048 M 1048 (1403)
Q Consensus 1048 ~ 1048 (1403)
.
T Consensus 174 l 174 (377)
T PF03097_consen 174 L 174 (377)
T ss_dssp H
T ss_pred H
Confidence 3
No 431
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=63.32 E-value=8.3 Score=27.67 Aligned_cols=25 Identities=24% Similarity=0.226 Sum_probs=21.8
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQDIGKMDTALRYLQE 1149 (1403)
Q Consensus 1125 ~~~~nLA~iy~~~g~~deAl~~lek 1149 (1403)
.+.+++|.++...|++++|+..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~~ 26 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLRR 26 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHhC
Confidence 3578999999999999999998763
No 432
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=63.16 E-value=2.1e+02 Score=30.48 Aligned_cols=102 Identities=13% Similarity=0.103 Sum_probs=72.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAA 1125 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~ 1125 (1403)
+-.+-...|.|.+|..++.+.++.- .-.+...+|..+++|.....+-..-+.--.+..+.......+..|..+.
T Consensus 99 qva~kis~~~~~eaK~LlnkIi~nk------~YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFWat 172 (220)
T PF10858_consen 99 QVAIKISEKKYSEAKQLLNKIIENK------EYSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFWAT 172 (220)
T ss_pred HHHHHHhhcchhHHHHHHHHHHhhh------hHHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchHHH
Confidence 3344566789999999999998863 2357888999999999876553333333333333333344566777777
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
+-..-|..-...|.-.+|+++++..+.-
T Consensus 173 AtI~kaiwdik~nm~~~aeknL~~l~~S 200 (220)
T PF10858_consen 173 ATIIKAIWDIKNNMKNQAEKNLKNLLAS 200 (220)
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 7777777778899999999999887763
No 433
>PLN02560 enoyl-CoA reductase
Probab=62.67 E-value=19 Score=42.46 Aligned_cols=77 Identities=18% Similarity=0.293 Sum_probs=52.1
Q ss_pred ccEEEeCCCCcee---EEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCC--ccccccccccccccccCCCccEE
Q 000589 84 YPVTVKTQSNEKL---ELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGS--THHLEDYNEISEVADITTGGCTL 158 (1403)
Q Consensus 84 ~~v~v~~p~~~~~---~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~--~~~l~~~~e~~~~~~~~~~~~~l 158 (1403)
+.|+|+...+.++ +|.+.++.+|.||++.+........-..-.|.+..++|. ...|+|-..|++. |+++ +.+|
T Consensus 1 M~I~Vk~~~Gk~i~~~~lev~~~aTV~dLK~~Isk~~~~~~~~RqRL~~~~~~gk~~g~~L~d~ktL~d~-gv~~-gstL 78 (308)
T PLN02560 1 MKVTVVSRSGREIIKGGLEVPDSATVADLKKAIHKRKKKYYPSRQRLTLPLPPGKTRPTVLDDSKSLKDY-GLGD-GGTV 78 (308)
T ss_pred CEEEEEcCCCCeecceeEEcCCCCcHHHHHHHHHHHcCCCChhheEEEEecCCCCcCccccCCCCCHHhc-CCCC-CceE
Confidence 3688998888776 799999999999999999875544333345655422222 1356776667654 6666 6666
Q ss_pred EEEe
Q 000589 159 EMVA 162 (1403)
Q Consensus 159 ~~v~ 162 (1403)
.+..
T Consensus 79 y~kD 82 (308)
T PLN02560 79 VFKD 82 (308)
T ss_pred EEEe
Confidence 6553
No 434
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=61.99 E-value=49 Score=34.74 Aligned_cols=89 Identities=16% Similarity=0.107 Sum_probs=63.8
Q ss_pred hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1079 PDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1079 p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
......+..+...-...++++++..++....-+ .|........-|.++...|+|.+|+..|++..+-.
T Consensus 7 ~~iv~gLi~~~~~aL~~~d~~D~e~lLdALrvL--------rP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~---- 74 (153)
T TIGR02561 7 NRLLGGLIEVLMYALRSADPYDAQAMLDALRVL--------RPNLKELDMFDGWLLIARGNYDEAARILRELLSSA---- 74 (153)
T ss_pred HHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--------CCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC----
Confidence 345556666666667799999998887655443 35666667778999999999999999999876521
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFK 1183 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~ 1183 (1403)
+....+.-.++.|+..+||.+
T Consensus 75 ----~~~p~~kAL~A~CL~al~Dp~ 95 (153)
T TIGR02561 75 ----GAPPYGKALLALCLNAKGDAE 95 (153)
T ss_pred ----CCchHHHHHHHHHHHhcCChH
Confidence 223444556778888888764
No 435
>cd01814 NTGP5 Ubiquitin-like NTGP5 and ATGP4. NTGP5 and ATGP4 are plant-specific isoprenylated GTP-binding proteins with a single fold that resembles ubiquitin. The function of these proteins is unknown.
Probab=61.97 E-value=17 Score=36.13 Aligned_cols=78 Identities=14% Similarity=0.180 Sum_probs=57.4
Q ss_pred cccEEEeCCCCcee-EEecCCCChHHHHHHHhhhc-Ccc-----eeeeeeEeeeCCCCCCcccccccccccccc----cc
Q 000589 83 LYPVTVKTQSNEKL-ELQLNPGDSVMDIRQFLLDA-PET-----CFFTCYDLVLHTKDGSTHHLEDYNEISEVA----DI 151 (1403)
Q Consensus 83 ~~~v~v~~p~~~~~-~l~~~~~~~v~dv~~~l~~~-~~t-----~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~----~~ 151 (1403)
.+.|...+++|..| -+.+.++++|.+|++.|... |.. |--..-.|.|.| ..|+|-..|++.. ++
T Consensus 4 ~~e~kfrl~dg~digp~~~~~sdTV~~lKekI~~~~p~~ke~~P~~~~~qKLIysG-----KiLeD~~TL~d~~~p~g~~ 78 (113)
T cd01814 4 QIEIKFRLYDGSDIGPKRYPAATTVDFLKERVVSQWPKDKEVGPKTVNEVKLISAG-----KILENSKTVGECRSPVGDI 78 (113)
T ss_pred cEEEEEEccCCCccCccccChhhHHHHHHHHHHHhcccccccCCCCHHHeEEEeCC-----eecCCCCcHHHhCCccccc
Confidence 46778888998543 45778999999999999743 323 556678899999 8899988888774 23
Q ss_pred CCCccEEEEEecCC
Q 000589 152 TTGGCTLEMVAALY 165 (1403)
Q Consensus 152 ~~~~~~l~~v~~~Y 165 (1403)
..+..+++||..|=
T Consensus 79 ~~~~~TmHvvlr~~ 92 (113)
T cd01814 79 AGGVITMHVVVQPP 92 (113)
T ss_pred CCCceEEEEEecCC
Confidence 33468888887653
No 436
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=61.83 E-value=95 Score=36.14 Aligned_cols=90 Identities=16% Similarity=0.217 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHH
Q 000589 1056 MAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQ 1135 (1403)
Q Consensus 1056 ~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~ 1135 (1403)
|..-+...++++.- ..+.++..++..+...|+++.++..+++.+.+ +|..-..|..+-..|.
T Consensus 137 f~~WV~~~R~~l~e----------~~~~~l~~lae~~~~~~~~~~~~~~l~~Li~~--------dp~~E~~~~~lm~~y~ 198 (280)
T COG3629 137 FDEWVLEQRRALEE----------LFIKALTKLAEALIACGRADAVIEHLERLIEL--------DPYDEPAYLRLMEAYL 198 (280)
T ss_pred HHHHHHHHHHHHHH----------HHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--------CccchHHHHHHHHHHH
Confidence 55566666665543 45678889999999999999999999998864 6777778889999999
Q ss_pred HcCCHHHHHHHHHHHHHHHHHHhCCCcH
Q 000589 1136 DIGKMDTALRYLQEALKKNERLLGEEHI 1163 (1403)
Q Consensus 1136 ~~g~~deAl~~lekAL~l~~~~~G~~~~ 1163 (1403)
..|+...|+..|++.-.....-.|.+..
T Consensus 199 ~~g~~~~ai~~y~~l~~~~~edlgi~P~ 226 (280)
T COG3629 199 VNGRQSAAIRAYRQLKKTLAEELGIDPA 226 (280)
T ss_pred HcCCchHHHHHHHHHHHHhhhhcCCCcc
Confidence 9999999999999988876555555543
No 437
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=61.70 E-value=3e+02 Score=31.73 Aligned_cols=159 Identities=13% Similarity=0.042 Sum_probs=85.4
Q ss_pred HcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 000589 1010 AEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMA 1089 (1403)
Q Consensus 1010 ~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA 1089 (1403)
.+++|++|++++...... +.+.|++..|.++..-.++.++...... ......+|+
T Consensus 2 ~~kky~eAidLL~~Ga~~----------------------ll~~~Q~~sg~DL~~lliev~~~~~~~~---~~~~~~rl~ 56 (260)
T PF04190_consen 2 KQKKYDEAIDLLYSGALI----------------------LLKHGQYGSGADLALLLIEVYEKSEDPV---DEESIARLI 56 (260)
T ss_dssp HTT-HHHHHHHHHHHHHH----------------------HHHTT-HHHHHHHHHHHHHHHHHTT------SHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHH----------------------HHHCCCcchHHHHHHHHHHHHHHcCCCC---CHHHHHHHH
Confidence 456777777766655443 4455666666666666666655532111 122335666
Q ss_pred HHHHHCCCHH-HHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----H---HH--HHh
Q 000589 1090 LFYHGLNQTE-LALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALK-----K---NE--RLL 1158 (1403)
Q Consensus 1090 ~~~~~~G~~~-eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~-----l---~~--~~~ 1158 (1403)
.++.....-+ +-..+..+|+.-. + .+.........+..+|.+|.+.|++.+|..+|-.+-. . .. ...
T Consensus 57 ~l~~~~~~~~p~r~~fi~~ai~WS-~-~~~~~~Gdp~LH~~~a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~ 134 (260)
T PF04190_consen 57 ELISLFPPEEPERKKFIKAAIKWS-K-FGSYKFGDPELHHLLAEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTK 134 (260)
T ss_dssp HHHHHS-TT-TTHHHHHHHHHHHH-H-TSS-TT--HHHHHHHHHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCcchHHHHHHHHHHHH-c-cCCCCCCCHHHHHHHHHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHh
Confidence 6666555433 3455666676655 2 3333334456688999999999999999998842211 1 11 111
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDIL 1196 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~ 1196 (1403)
|..+ .......+.-.-|...++...|...+..-.+.+
T Consensus 135 ~~~~-e~dlfi~RaVL~yL~l~n~~~A~~~~~~f~~~~ 171 (260)
T PF04190_consen 135 GYPS-EADLFIARAVLQYLCLGNLRDANELFDTFTSKL 171 (260)
T ss_dssp TSS---HHHHHHHHHHHHHHTTBHHHHHHHHHHHHHHH
T ss_pred cCCc-chhHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH
Confidence 2221 112222333445778899999988777666543
No 438
>COG3014 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=60.64 E-value=3.5e+02 Score=32.19 Aligned_cols=29 Identities=14% Similarity=0.108 Sum_probs=22.0
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQ 1030 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~ 1030 (1403)
++.|.+++..++|.+....+.-|-..+++
T Consensus 62 L~~Gl~a~~~~dya~S~~~ldAae~~~Kq 90 (449)
T COG3014 62 LQNGLSALYARDYATSLGVLDAAEQRFKQ 90 (449)
T ss_pred hhhhHHHHHhhhHHHhhhHHHHHHHHHhh
Confidence 45688999999998888887766655544
No 439
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=60.54 E-value=16 Score=42.14 Aligned_cols=67 Identities=19% Similarity=0.131 Sum_probs=56.0
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
..+|......+.-....|+.++|..+|.-|+.+ .|....++..+|...-...+.-+|-.+|-+|+.+
T Consensus 113 ~kEA~~Al~~A~~~~~~Gk~ekA~~lfeHAlal--------aP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 113 VKEAILALKAAGRSRKDGKLEKAMTLFEHALAL--------APTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred hHHHHHHHHHHHHHHhccchHHHHHHHHHHHhc--------CCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 345666677777778899999999999999998 3445567888898888889999999999999987
No 440
>PF11470 TUG-UBL1: GLUT4 regulating protein TUG; InterPro: IPR021569 TUG is a GLUT4 regulating protein and functions to retain membrane vesicles containing GLUT4 intracellularly. TUG releases the GLUT4 containing vesicles to the cellular exocytic machinery in response to insulin stimulation which allows translocation to the plasma membrane []. TUG has an N-terminal ubiquitin-like domain (UBL1) which in similar proteins appears to participate in protein-protein interactions []. The region does have a area of negative electrostatic potential and increased backbone motility which leads to suggestions of a potential protein-protein interaction site []. ; PDB: 2AL3_A.
Probab=60.36 E-value=19 Score=32.36 Aligned_cols=65 Identities=12% Similarity=0.177 Sum_probs=37.4
Q ss_pred EeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEE
Q 000589 88 VKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEM 160 (1403)
Q Consensus 88 v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~ 160 (1403)
|..+++....++++|+.++.||.+--...-. -.-..|.|.|++ +.||-...++ +.||.. ++.|+|
T Consensus 1 vi~~~~rr~~vkvtp~~~l~~VL~eac~k~~-l~~~~~~L~h~~-----k~ldlslp~R-~snL~n-~akLeL 65 (65)
T PF11470_consen 1 VICYNFRRFKVKVTPNTTLNQVLEEACKKFG-LDPSSYDLKHNN-----KPLDLSLPFR-LSNLPN-NAKLEL 65 (65)
T ss_dssp EE-TTS-EEEE---TTSBHHHHHHHHHHHTT---GGG-EEEETT-----EEESSS-BHH-HH---S-S-EEEE
T ss_pred CCccCCcEEEEEECCCCCHHHHHHHHHHHcC-CCccceEEEECC-----EEecccccee-ecCCCC-CCEEeC
Confidence 3467788899999999999998775443321 111279999998 6777666655 457777 888876
No 441
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=59.75 E-value=37 Score=34.97 Aligned_cols=69 Identities=10% Similarity=0.126 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Q 000589 995 CSEAKNLVEMGKVQLAEGL---LSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELII 1069 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~---~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i 1069 (1403)
.......+++++++....+ ..+.+.++...+.. ......-.+++.||.-+++.++|+.|+.|.+..++.
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~------~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKS------AHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhh------cCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4446778888888876654 34455555554431 222345678899999999999999999999888775
No 442
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=59.26 E-value=43 Score=45.30 Aligned_cols=97 Identities=14% Similarity=0.133 Sum_probs=52.5
Q ss_pred HhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1051 YHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1051 ~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
.....|++|+..|++...-+ +...+--.+...+|..+..+-.-..--+.|.+|+.-+....+. +...--|..-
T Consensus 486 ~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~ 558 (932)
T PRK13184 486 LAEKLYDQALIFYRRIRESF-----PGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGK 558 (932)
T ss_pred HhhHHHHHHHHHHHHHhhcC-----CCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhH
Confidence 33344555555555543322 1112223445555555443222222224555555555544332 2223336677
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~ 1154 (1403)
|.+|+++|+|++-+++|.-|++.+
T Consensus 559 ~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 559 ALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhc
Confidence 889999999999999999998876
No 443
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=59.01 E-value=58 Score=37.31 Aligned_cols=62 Identities=16% Similarity=0.180 Sum_probs=49.7
Q ss_pred HHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHH
Q 000589 1059 AIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQD 1136 (1403)
Q Consensus 1059 Ai~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~ 1136 (1403)
|+.+|.+|+.+. |.....|+.||.++...|+.-.|+-+|-|++.. .+|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l~--------P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRLL--------PSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhC--------CCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 789999999984 888899999999999999999999999999842 2454 5667788877766
No 444
>KOG4563 consensus Cell cycle-regulated histone H1-binding protein [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=58.77 E-value=26 Score=41.54 Aligned_cols=64 Identities=14% Similarity=0.138 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHH
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQ 1187 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~ 1187 (1403)
+.-+...|...+.+++++.|...|..|..++...+|..|..+...++..|..++..+++..++-
T Consensus 41 ~e~lv~~G~~~~~~~d~~~Avda~s~A~~l~~ei~Ge~~~e~~eal~~YGkslLela~~e~~VL 104 (400)
T KOG4563|consen 41 LEELVQAGRRALCNNDIDKAVDALSEATELSDEIYGEKHLETFEALFLYGKSLLELAKEESQVL 104 (400)
T ss_pred HHHHHHhhhHHHhcccHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4446778899999999999999999999999999999999999999999999999888776654
No 445
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=58.60 E-value=77 Score=40.01 Aligned_cols=49 Identities=14% Similarity=-0.014 Sum_probs=34.1
Q ss_pred HHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1050 LYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1050 y~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
..+.|+++.|..+..++-. ..-|..||.+....+++..|.+++.+|..+
T Consensus 647 al~lgrl~iA~~la~e~~s-------------~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d~ 695 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEANS-------------EVKWRQLGDAALSAGELPLASECFLRARDL 695 (794)
T ss_pred hhhcCcHHHHHHHHHhhcc-------------hHHHHHHHHHHhhcccchhHHHHHHhhcch
Confidence 3566777877776655422 223567888888888888888888887654
No 446
>cd00196 UBQ Ubiquitin-like proteins. Ubiquitin homologs; Includes ubiquitin and ubiquitin-like proteins. Ubiquitin-mediated proteolysis is part of the regulated turnover of proteins required for controlling cell cycle progression. Other family members are protein modifiers that perform a wide range of functions. Ubiquitination usually results in a covalent bond between the C-terminus of ubiquitin and the epsilon-amino group of a substrate lysine. The three-step mechanism requires an activating enzyme (E1) that forms a thiol ester with the C-terminal carboxy group, a conjugating enzyme (E2) that transiently carries the activated ubiquitin molecule as a thiol ester, and a ligase (E3) that transfers the activated ubiquitin from the E2 to the substrate lysine residue. In poly-ubiquitination, ubiquitin itself is the substrate.
Probab=58.11 E-value=25 Score=29.11 Aligned_cols=67 Identities=22% Similarity=0.242 Sum_probs=44.6
Q ss_pred EeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe
Q 000589 88 VKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA 162 (1403)
Q Consensus 88 v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~ 162 (1403)
|..+++...++.+.+..+|.+|++.|..... -.-.+|.|.+++ ..+++-..+ .-.++.+ +.+|.++.
T Consensus 2 v~~~~~~~~~~~~~~~~tv~~l~~~i~~~~~-~~~~~~~l~~~~-----~~~~~~~~~-~~~~~~~-~~~i~~~~ 68 (69)
T cd00196 2 VKLNDGKTVELLVPSGTTVADLKEKLAKKLG-LPPEQQRLLVNG-----KILPDSLTL-EDYGLQD-GDELVLVP 68 (69)
T ss_pred eEecCCCEEEEEcCCCCcHHHHHHHHHHHHC-cChHHeEEEECC-----eECCCCCcH-HHcCCCC-CCEEEEEe
Confidence 5667888899999999999999999988743 234557777777 344443322 1123344 66776653
No 447
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=57.41 E-value=3.3e+02 Score=32.87 Aligned_cols=34 Identities=6% Similarity=0.058 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
.+.+++..|..+...+++-+|+..++.|...++.
T Consensus 254 ~a~A~y~~a~~~~e~~k~GeaIa~L~~A~~~~~~ 287 (346)
T cd09240 254 HALAEYHQSLVAKAQKKFGEEIARLQHALELIKT 287 (346)
T ss_pred HHHHHHHHHHHhhhhchHHHHHHHHHHHHHHHHH
Confidence 4556677788888888899999999988876543
No 448
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=56.82 E-value=5.7e+02 Score=33.41 Aligned_cols=34 Identities=12% Similarity=0.072 Sum_probs=24.3
Q ss_pred CHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1120 HPDVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1120 ~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
....-.+....|.-....|++++|+.+|.-|-+.
T Consensus 410 ~~~~~~i~~~~A~~~e~~g~~~dAi~Ly~La~~~ 443 (613)
T PF04097_consen 410 EDFLREIIEQAAREAEERGRFEDAILLYHLAEEY 443 (613)
T ss_dssp SHHHHHHHHHHHHHHHHCT-HHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHhhH
Confidence 3455566777888888999999999998766543
No 449
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=56.49 E-value=38 Score=41.83 Aligned_cols=96 Identities=20% Similarity=0.132 Sum_probs=71.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHHHHHhc
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHA---GDMAGAIMQQHKELIINERCL 1074 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~---G~~~eAi~~~~kAL~i~er~l 1074 (1403)
++-+..-|.-.+..+....|+..|.+++.. .|....+|.+.|.+++.. |+.-.|+.-+..|+++
T Consensus 374 ie~~~~egnd~ly~~~~~~~i~~~s~a~q~--------~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl----- 440 (758)
T KOG1310|consen 374 IEKFKTEGNDGLYESIVSGAISHYSRAIQY--------VPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL----- 440 (758)
T ss_pred HHHHHhhccchhhhHHHHHHHHHHHHHhhh--------ccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC-----
Confidence 333444444445556677888888888876 355667788888887764 5666777777777766
Q ss_pred CCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Q 000589 1075 GLDHPDTAHSYGNMALFYHGLNQTELALRHMSRAL 1109 (1403)
Q Consensus 1075 g~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL 1109 (1403)
+|....+++.|+.++..++++.+|+.+...+.
T Consensus 441 ---n~s~~kah~~la~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 441 ---NPSIQKAHFRLARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred ---ChHHHHHHHHHHHHHHHHhhHHHhhhhHHHHh
Confidence 57788999999999999999999999876554
No 450
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=56.11 E-value=1.4e+02 Score=37.81 Aligned_cols=72 Identities=17% Similarity=0.085 Sum_probs=50.7
Q ss_pred HHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1081 TAHSYGNMALFYHG--LNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1081 ~~~a~~nLA~~~~~--~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
...++.+||.+... ...-..++.+|.+|+...+..++..|. .-|..+|-.|.+.++|.+|+.++-+|-....
T Consensus 276 YPmALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~ 349 (618)
T PF05053_consen 276 YPMALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIR 349 (618)
T ss_dssp -HHHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHT
T ss_pred CchhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45566777776542 233467799999999999998876553 3477899999999999999999988866553
No 451
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=55.34 E-value=1.2e+02 Score=37.72 Aligned_cols=52 Identities=21% Similarity=0.289 Sum_probs=37.2
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
.+.|| .+.|+++.|.+..++ ......|..||.....+|+++-|.++|+++-+
T Consensus 324 rFeLA---l~lg~L~~A~~~a~~-------------~~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d 375 (443)
T PF04053_consen 324 RFELA---LQLGNLDIALEIAKE-------------LDDPEKWKQLGDEALRQGNIELAEECYQKAKD 375 (443)
T ss_dssp HHHHH---HHCT-HHHHHHHCCC-------------CSTHHHHHHHHHHHHHTTBHHHHHHHHHHCT-
T ss_pred HhHHH---HhcCCHHHHHHHHHh-------------cCcHHHHHHHHHHHHHcCCHHHHHHHHHhhcC
Confidence 44444 477887777766432 12334789999999999999999999998754
No 452
>cd01789 Alp11_N Ubiquitin-like domain of Alp11 tubulin-folding cofactor B. Alp11, also known as tubulin-folding cofactor B, is one of at least three proteins required for the proper folding of tubulins prior to their incorporation into microtubules. These cofactors are necessary for the biogenesis of microtubules and for cell viability. Alp11 has three domains including an N-terminal ubiquitin-like domain (represented by this CD) which executes the essential function, a central coiled-coil domain necessary for maintenance of cellular alpha-tubulin levels, and a C-terminal CLIP-170 domain is required for efficient binding to alpha-tubulin.
Probab=55.31 E-value=48 Score=31.22 Aligned_cols=76 Identities=14% Similarity=0.262 Sum_probs=51.2
Q ss_pred ccEEEeCCCC-ceeEEecCCCChHHHHHHHhhhcCcceeeeeeEee-eCCCCCCcccc-ccccccccccccCCCccEEEE
Q 000589 84 YPVTVKTQSN-EKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLV-LHTKDGSTHHL-EDYNEISEVADITTGGCTLEM 160 (1403)
Q Consensus 84 ~~v~v~~p~~-~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~-~~~~~~~~~~l-~~~~e~~~~~~~~~~~~~l~~ 160 (1403)
+.|.|..+.. ..++..+.++.+|.+|++-|.....+ .=.+-.|. +.+.++....| +|...|+.+ |+.+ |+.|.|
T Consensus 2 v~v~i~~~~~~~~~ekr~~~~~Tv~~lK~kl~~~~G~-~~~~mrL~l~~~~~~~~~~l~~d~~~L~~y-~~~d-g~~IhV 78 (84)
T cd01789 2 VTVNITSSADSFSFEKKYSRGLTIAELKKKLELVVGT-PASSMRLQLFDGDDKLVSKLDDDDALLGSY-PVDD-GCRIHV 78 (84)
T ss_pred EEEEEEeCCCceeeeEecCCCCcHHHHHHHHHHHHCC-CccceEEEEEcCCCCeEeecCCCccEeeec-cCCC-CCEEEE
Confidence 4566666653 44777899999999999999766543 23345564 34432221234 677778777 6888 899988
Q ss_pred Ee
Q 000589 161 VA 162 (1403)
Q Consensus 161 v~ 162 (1403)
|.
T Consensus 79 vD 80 (84)
T cd01789 79 ID 80 (84)
T ss_pred Ee
Confidence 75
No 453
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=55.00 E-value=78 Score=36.70 Aligned_cols=73 Identities=21% Similarity=0.236 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCH
Q 000589 1126 TFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEEDS 1205 (1403)
Q Consensus 1126 ~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~~~ 1205 (1403)
.+...+..|...|.+.+|+++.++++.+. +..-..+..|-.+|..+||--.|..+|++.-..+.+.+|-+-.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltld--------pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vd 352 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLD--------PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVD 352 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcC--------hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcc
Confidence 34556788999999999999999999864 5666778889999999999999999999988888888886544
Q ss_pred H
Q 000589 1206 R 1206 (1403)
Q Consensus 1206 ~ 1206 (1403)
.
T Consensus 353 d 353 (361)
T COG3947 353 D 353 (361)
T ss_pred h
Confidence 3
No 454
>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]. This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.
Probab=54.43 E-value=76 Score=36.34 Aligned_cols=62 Identities=18% Similarity=0.197 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHH
Q 000589 1017 AYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHG 1094 (1403)
Q Consensus 1017 A~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~ 1094 (1403)
|..+|.+|+.+ .|.....|+.||.++...|+.=.|+-+|-+++.. ..|. ..+..||..++..
T Consensus 1 A~~~Y~~A~~l--------~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~-------~~Pf-~~A~~NL~~lf~~ 62 (278)
T PF10373_consen 1 AERYYRKAIRL--------LPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAV-------RIPF-PSARENLQKLFEK 62 (278)
T ss_dssp HHHHHHHHHHH---------TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSS-------SB---HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHh--------CCCCCCcccchhhhhccccchHHHHHHHHHHHhc-------CCCc-HHHHHHHHHHHHH
Confidence 78899999998 5778899999999999999999999999998854 2343 5677788877776
No 455
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=53.84 E-value=5.3e+02 Score=32.08 Aligned_cols=139 Identities=13% Similarity=0.114 Sum_probs=78.3
Q ss_pred CCCCHHHHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHHHHHHhCCCcHHHHHH-HHHHHHHHHHcCCHHHHHH--HHHHH
Q 000589 1117 GPDHPDVAATFINVAMMYQDIGK-MDTALRYLQEALKKNERLLGEEHIQTAVC-YHALAIAFNCMGAFKLSHQ--HEKKT 1192 (1403)
Q Consensus 1117 g~d~p~~a~~~~nLA~iy~~~g~-~deAl~~lekAL~l~~~~~G~~~~~~a~~-~~~LA~~y~~~Gd~~eAi~--~lkkA 1192 (1403)
..|....+..+..-|.-+++.|. -++|+.+++.++... +.....-.. ..-.-. .|..|+. .+-+.
T Consensus 372 DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~ft-----~yD~ec~n~v~~fvKq------~Y~qaLs~~~~~rL 440 (549)
T PF07079_consen 372 DIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQFT-----NYDIECENIVFLFVKQ------AYKQALSMHAIPRL 440 (549)
T ss_pred cccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhc-----cccHHHHHHHHHHHHH------HHHHHHhhhhHHHH
Confidence 34556677788888999999998 778888888888753 111111111 111111 1222221 11111
Q ss_pred HH--HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHHHH----HhCChH
Q 000589 1193 YD--ILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQAVA----AAGGSG 1266 (1403)
Q Consensus 1193 l~--i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~La----~~G~~~ 1266 (1403)
+. .+-...|-....+.+ ..++.+...+++...+|+|.++..+-. =+.+-.| ...++..+| ...+|+
T Consensus 441 lkLe~fi~e~gl~~i~i~e--~eian~LaDAEyLysqgey~kc~~ys~-----WL~~iaP-S~~~~RLlGl~l~e~k~Y~ 512 (549)
T PF07079_consen 441 LKLEDFITEVGLTPITISE--EEIANFLADAEYLYSQGEYHKCYLYSS-----WLTKIAP-SPQAYRLLGLCLMENKRYQ 512 (549)
T ss_pred HHHHHHHHhcCCCcccccH--HHHHHHHHHHHHHHhcccHHHHHHHHH-----HHHHhCC-cHHHHHHHHHHHHHHhhHH
Confidence 11 122223322222222 225566556677899999999886554 4444445 556666666 677888
Q ss_pred HHHHHHHH
Q 000589 1267 NSGASANN 1274 (1403)
Q Consensus 1267 eA~~~~ek 1274 (1403)
+|..++..
T Consensus 513 eA~~~l~~ 520 (549)
T PF07079_consen 513 EAWEYLQK 520 (549)
T ss_pred HHHHHHHh
Confidence 88888765
No 456
>cd09240 BRO1_Alix Protein-interacting, N-terminal, Bro1-like domain of mammalian Alix and related domains. This family contains the N-terminal, Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), also called apoptosis-linked gene-2 interacting protein 1 (AIP1). It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also f
Probab=53.46 E-value=4.8e+02 Score=31.47 Aligned_cols=110 Identities=22% Similarity=0.234 Sum_probs=56.5
Q ss_pred HHHHHHHHHHHHccc-cCCccHHHhHHHHHHHHHHHH-------HHHHHHHHHhhhc----c---------cCCCccHHH
Q 000589 922 LWSDLKEFAKLKYQF-ELPEDARLWVKKVSVMRNLCQ-------KVGISVTARKYDF----N---------AATPFETSD 980 (1403)
Q Consensus 922 lw~~I~~~~~~rf~y-~l~~~~~~~~~~~~lLr~i~~-------k~Giql~~~~Y~f----~---------~~~~f~~~d 980 (1403)
+...+.+.+...|.- +-++.....+..+.-||.-+. ..|+....+.|.. . ...+|.+.|
T Consensus 16 ~~~~l~~~I~~~y~~~~~~~~~~~~l~~l~~lR~~~~~~~~~~~~~~~~~l~~Yy~qL~~l~~rfp~~~~~~~v~F~W~d 95 (346)
T cd09240 16 LVKPLEKFIKNTYSSGEEQADYKEAIKELNKLRNNAVCRPLDKHESSLELLLRYYDQLCAIEPKFPFSESQIQVTFTWKD 95 (346)
T ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHhhcCCCCcchhHHHHHHHHHHHHHHHHhcCCCCcccccceeeeec
Confidence 334456666666653 334444455666666666421 1344433333321 1 123455544
Q ss_pred HHhhh------hhhhhcCCchhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHh
Q 000589 981 ILNLQ------PVVKHSVPICSEAKNLVEMGKVQLAEGL---------LSEAYTLFSEAFSILQQV 1031 (1403)
Q Consensus 981 I~~l~------pvvK~~~~~~~~A~~l~~lG~~~~~~G~---------~eeA~~~l~eAL~l~~~i 1031 (1403)
...-. +.+...+-....+..++++|-++.+.+- +.+|..+|++|--+++-+
T Consensus 96 ~~~~~~~~~~~~~~~~~~l~fEka~vlfNiaal~s~la~~~~~~~~eglK~A~~~fq~AAG~F~~l 161 (346)
T cd09240 96 AFDKGSLFGGSKKLALSSLGYEKVCVLFNIAALQSQIAAEQNLDTDEGLKLAAKLFQQAAGIFNHL 161 (346)
T ss_pred ccccccccCCCcccccccHHHHHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHHHHHH
Confidence 32211 1122222334557888888887765432 577888998887765443
No 457
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=51.91 E-value=35 Score=28.14 Aligned_cols=25 Identities=20% Similarity=0.215 Sum_probs=22.9
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1170 HALAIAFNCMGAFKLSHQHEKKTYD 1194 (1403)
Q Consensus 1170 ~~LA~~y~~~Gd~~eAi~~lkkAl~ 1194 (1403)
+.||.+|..+|+++.|...+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5799999999999999999998874
No 458
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=51.50 E-value=6.4e+02 Score=32.35 Aligned_cols=140 Identities=11% Similarity=0.060 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCC
Q 000589 1124 AATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQLGEE 1203 (1403)
Q Consensus 1124 a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~lg~~ 1203 (1403)
...|......-...|+++...-.|++++--+ ..+-..|...+......|+.+-|-..+..+.+++.+ .
T Consensus 297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~c--------A~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k----~ 364 (577)
T KOG1258|consen 297 LKNWRYYLDFEITLGDFSRVFILFERCLIPC--------ALYDEFWIKYARWMESSGDVSLANNVLARACKIHVK----K 364 (577)
T ss_pred HHHHHHHhhhhhhcccHHHHHHHHHHHHhHH--------hhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCC----C
Confidence 3344444555556667777777776666544 234455666677677777777777777777666432 2
Q ss_pred CHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHHHHHHH-HH---HhCChHHHHHHHHHHHHHh
Q 000589 1204 DSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLIHAFQA-VA---AAGGSGNSGASANNSLNAA 1279 (1403)
Q Consensus 1204 ~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~~a~~~-La---~~G~~~eA~~~~ekAL~~~ 1279 (1403)
.+.+. ..-+.+ ....|++..|..+++ .+....|....+-.. ++ ++|+.+.+.. +...+...
T Consensus 365 ~~~i~---L~~a~f------~e~~~n~~~A~~~lq-----~i~~e~pg~v~~~l~~~~~e~r~~~~~~~~~-~~~l~s~~ 429 (577)
T KOG1258|consen 365 TPIIH---LLEARF------EESNGNFDDAKVILQ-----RIESEYPGLVEVVLRKINWERRKGNLEDANY-KNELYSSI 429 (577)
T ss_pred CcHHH---HHHHHH------HHhhccHHHHHHHHH-----HHHhhCCchhhhHHHHHhHHHHhcchhhhhH-HHHHHHHh
Confidence 22222 112222 377889999998888 565555665543222 22 6777777764 44444444
Q ss_pred hcCCCCccccc
Q 000589 1280 LLGETLPRGRG 1290 (1403)
Q Consensus 1280 ~~G~~~p~~~~ 1290 (1403)
.-|..++....
T Consensus 430 ~~~~~~~~i~~ 440 (577)
T KOG1258|consen 430 YEGKENNGILE 440 (577)
T ss_pred cccccCcchhH
Confidence 44555555444
No 459
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=51.41 E-value=8.4e+02 Score=33.70 Aligned_cols=24 Identities=17% Similarity=0.230 Sum_probs=15.2
Q ss_pred HHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1132 MMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1132 ~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
.++...++...|..+..+|.+..+
T Consensus 1533 IL~~T~~di~ra~~L~s~A~~a~~ 1556 (1758)
T KOG0994|consen 1533 ILSRTKGDIARAENLQSEAERARS 1556 (1758)
T ss_pred HHHhhhhhHHHHHHHHHHHHHHHh
Confidence 344556777777777777666543
No 460
>PF12309 KBP_C: KIF-1 binding protein C terminal; InterPro: IPR022083 This family of proteins is found in bacteria and eukaryotes. Proteins in this family are typically between 365 and 621 amino acids in length. There is a conserved LLP sequence motif. KBP is a binding partner for KIF1Balpha that is a regulator of its transport function and thus represents a type of kinesin interacting protein.
Probab=50.93 E-value=4.8e+02 Score=31.86 Aligned_cols=101 Identities=15% Similarity=0.164 Sum_probs=56.6
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhH-----HHHHHHHHHHHH-------HCCC--------------------HHHH
Q 000589 1054 GDMAGAIMQQHKELIINERCLGLDHPDT-----AHSYGNMALFYH-------GLNQ--------------------TELA 1101 (1403)
Q Consensus 1054 G~~~eAi~~~~kAL~i~er~lg~d~p~~-----~~a~~nLA~~~~-------~~G~--------------------~~eA 1101 (1403)
.+.+.-+..+++=+.+.+.++..-+|.. -..++.||.+|. ...+ ...|
T Consensus 189 ~~~~r~~kmhkRR~d~Le~~~~~Ln~~~y~~~~rql~fElae~~~~i~dlk~~~~~~~~~~~~~~~~~~~~kin~l~~~a 268 (371)
T PF12309_consen 189 EDPDRQIKMHKRRADLLEPLLKELNPQYYLNLCRQLWFELAEIYSEIMDLKLEKLDEPQNDNEPPDDHALKKINQLCSKA 268 (371)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCChHHHHHHHHHHHHH
Confidence 6777777788877777776655444432 123344444442 2211 3456
Q ss_pred HHHHHHHHHHHHhhc-CC--------CCHHHHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHHH
Q 000589 1102 LRHMSRALLLLSLSS-GP--------DHPDVAATFINVAMMYQDI--GKMDTALRYLQEALKKN 1154 (1403)
Q Consensus 1102 l~~l~rAL~l~~~~~-g~--------d~p~~a~~~~nLA~iy~~~--g~~deAl~~lekAL~l~ 1154 (1403)
+.+|+.-+..+...- +. .......+++.+|.+|.+. ++..+=++.+.++|..+
T Consensus 269 i~~y~~fl~s~~~~~~~~~~~~~~~d~~~~~l~a~f~~arl~~K~~~~~~~~~~~~l~~sl~~y 332 (371)
T PF12309_consen 269 IKYYQKFLDSYKSPDSGKLPEKLDEDELRPYLYAYFHIARLYSKLITSDPKEQLENLEKSLEYY 332 (371)
T ss_pred HHHHHHHHHHHcCCccccCCCCCcHHHHHHHHHHHHHHHHHHccccCCChHHHHHHHHHHHHHH
Confidence 777777777665321 10 1123567889999998876 44444444444444443
No 461
>cd09239 BRO1_HD-PTP_like Protein-interacting, N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase and related domains. This family contains the N-terminal, Bro1-like domain of mammalian His-Domain type N23 protein tyrosine phosphatase (HD-PTP) and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. HD-PTP participates in cell migration and endosomal trafficking. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-l
Probab=50.56 E-value=3e+02 Score=33.37 Aligned_cols=35 Identities=14% Similarity=-0.037 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHHHhcC---------CHHHHHHHHHHHHHHHH
Q 000589 1037 REVANCCRYLAMVLYHAG---------DMAGAIMQQHKELIINE 1071 (1403)
Q Consensus 1037 p~~a~a~~~LA~iy~~~G---------~~~eAi~~~~kAL~i~e 1071 (1403)
-+.+.+++++|.+|.+.| .+.+|..+|++|--.++
T Consensus 111 fEka~vlfNigal~sq~a~~~~r~~~~glK~A~~~fq~AAG~F~ 154 (361)
T cd09239 111 FEEASVLYNIGALHSQLGASDKRDSEEGMKVACTHFQCAAWAFA 154 (361)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHH
Confidence 456788888888887654 25678888888776654
No 462
>PF02196 RBD: Raf-like Ras-binding domain; InterPro: IPR003116 This is the Ras-binding domain found in proteins related to Ras. It is found in association with the PE-bind and pkinase domains.; GO: 0005057 receptor signaling protein activity, 0007165 signal transduction; PDB: 1RFA_A 1C1Y_B 3KUD_B 1GUA_B 3KUC_B 2L05_A 3NY5_D 1RRB_A 1WFY_A 1WXM_A.
Probab=49.72 E-value=38 Score=30.88 Aligned_cols=62 Identities=16% Similarity=0.184 Sum_probs=44.1
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccc
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVAD 150 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~ 150 (1403)
.+.|.||++....+++-||.+|.|+-.-+...-. ..++++.+...|.+ ..|+--..++.++|
T Consensus 2 ~~~v~LP~~q~t~V~vrpg~ti~d~L~~~~~kr~-L~~~~~~V~~~~~~---k~l~~~~d~~~L~~ 63 (71)
T PF02196_consen 2 TCRVHLPNGQRTVVQVRPGMTIRDALSKACKKRG-LNPECCDVRLVGEK---KPLDWDQDSSSLPG 63 (71)
T ss_dssp EEEEEETTTEEEEEEE-TTSBHHHHHHHHHHTTT---CCCEEEEEEEEE---EEE-TTSBGGGGTT
T ss_pred eEEEECCCCCEEEEEEcCCCCHHHHHHHHHHHcC-CCHHHEEEEEcCCC---ccccCCCceeeecC
Confidence 4789999999999999999999999988887754 33344444443322 77888788888865
No 463
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=49.71 E-value=1.3e+02 Score=31.16 Aligned_cols=70 Identities=19% Similarity=0.192 Sum_probs=49.0
Q ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCH-HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1080 DTAHSYGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHP-DVAATFINVAMMYQDIGKMDTALRYLQEALKK 1153 (1403)
Q Consensus 1080 ~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p-~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l 1153 (1403)
-...+.+++|+++....+.+. .++.+.+++.++...|| ..-...+.||.-+.+.++|+.|+.|....++.
T Consensus 30 ~s~~s~f~lAwaLV~S~~~~d----v~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~ 100 (149)
T KOG3364|consen 30 VSKQSQFNLAWALVRSRDTED----VQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLET 100 (149)
T ss_pred chHHHHHHHHHHHHcccchHH----HHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhh
Confidence 356788999999987765433 23333343333322333 34567889999999999999999999888774
No 464
>PF05053 Menin: Menin; InterPro: IPR007747 MEN1, the gene responsible for multiple endocrine neoplasia type 1, is a tumour suppressor gene that encodes a protein called Menin which may be an atypical GTPase stimulated by nm23 [].; GO: 0005634 nucleus; PDB: 3RE2_A 3U84_B 3U86_A 3U88_B 3U85_A.
Probab=48.92 E-value=1.6e+02 Score=37.14 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=48.3
Q ss_pred HHHHHHHHHHHH--cCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1125 ATFINVAMMYQD--IGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1125 ~~~~nLA~iy~~--~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
.++.+||.+-.- ...-..++.+|++|+...+..++..|. .-|..+|..|++.++|.+|+.++-+|-+..+.
T Consensus 278 mALg~LadLeEi~pt~~r~~~~~l~~~AI~sa~~~Y~n~Hv---YPYty~gg~~yR~~~~~eA~~~Wa~aa~Vi~~ 350 (618)
T PF05053_consen 278 MALGNLADLEEIDPTPGRPTPLELFNEAISSARTYYNNHHV---YPYTYLGGYYYRHKRYREALRSWAEAADVIRK 350 (618)
T ss_dssp HHHHHHHHHHHHS--TTS--HHHHHHHHHHHHHHHCTT--S---HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHTT
T ss_pred hhhhhhHhHHhhccCCCCCCHHHHHHHHHHHHHHHhcCCcc---ccceehhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444321 223466789999999999999876553 34677899999999999999999988776543
No 465
>PRK14707 hypothetical protein; Provisional
Probab=47.94 E-value=8.8e+02 Score=35.97 Aligned_cols=193 Identities=10% Similarity=-0.033 Sum_probs=112.6
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH--HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChh
Q 000589 1003 EMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANC--CRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPD 1080 (1403)
Q Consensus 1003 ~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a--~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~ 1080 (1403)
.++.++...++|.+.-.+-.-+..+...+. .++..... -..++.++..+.+|.++-.+-.-+..+..++-+ .+.
T Consensus 962 ~lsNtLNALSKWPd~~~c~~AA~aLA~rL~--~~~~LR~al~aQ~vAN~LNALSKWPd~~~Cr~AA~~LA~rLa~--ep~ 1037 (2710)
T PRK14707 962 NLPQVLNALSKWPDVPAGGEVVDALAERLV--DEPALRNALDPIGMANALNALSKWLQMPVCAATVEALAARLSN--DPG 1037 (2710)
T ss_pred HHHHHHhhhccCCCchHHHHHHHHHHHHHh--ccHHHHhhcchHHHHHHHhhhhcCCCchHHHHHHHHHHHHhcc--CHh
Confidence 356666667777766665555555544431 12222222 234666677777777666666666666666522 233
Q ss_pred HHHH--HHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1081 TAHS--YGNMALFYHGLNQTELALRHMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLL 1158 (1403)
Q Consensus 1081 ~~~a--~~nLA~~~~~~G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~ 1158 (1403)
.... -..++.++..+.+|.+.-.+-.-+..+...+.....-..+..-..++.++..+.+|.+.-.+-+.++.+...+.
T Consensus 1038 L~~amdaQ~lan~LNALSKWPde~~Cr~Aa~aLA~rL~~d~~Lr~Al~aQ~vAN~LNaLSKWP~~~~Cr~Aa~~LA~rL~ 1117 (2710)
T PRK14707 1038 LCKALSSQGLTTVLNALCKWPEMPVCLAAASALAERLSDDLVLRNALDSQGFGNALNALSKWPDSPVCAAAASALAKRLT 1117 (2710)
T ss_pred hhhhcchHHHHHHHHhhccCCCchhHHHHHHHHHHHhhccHHHHHhhchHHHHHHHHHHhcCCCcHHHHHHHHHHHHHhc
Confidence 3222 23577777778888776666665555555442221111223345677888888888888888888888888776
Q ss_pred CCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1159 GEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1159 G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
...++........++.++....++.....+-.-+..+..+.
T Consensus 1118 ~~~~l~~~fd~q~vA~~LNALSKWp~~~~cr~Aa~~LA~RL 1158 (2710)
T PRK14707 1118 DDAGLRHVFDPINVSQALNALSKWPGTQACESAIDVLAATL 1158 (2710)
T ss_pred cccchhccCCHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence 55555555555666777666666654444444444444443
No 466
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=47.42 E-value=3.1e+02 Score=34.93 Aligned_cols=113 Identities=18% Similarity=0.135 Sum_probs=77.1
Q ss_pred cCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHH
Q 000589 1032 TGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSR-ALL 1110 (1403)
Q Consensus 1032 ~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~r-AL~ 1110 (1403)
.++.++...-++. ++..+...++...+.-....++.. ++..+.++.+||......|....++..+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~--------~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSV--------NPENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhc--------CcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 3567788877776 888888899988888877777765 577788899999888777776666655444 433
Q ss_pred HHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH
Q 000589 1111 LLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNE 1155 (1403)
Q Consensus 1111 l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~ 1155 (1403)
..... ..--..... ++.++..+..+++..++...++++.++..
T Consensus 131 ~~~~~-~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~l~~~~d~~p 173 (620)
T COG3914 131 LSPDN-AEFLGHLIR-FYQLGRYLKLLGRTAEAELALERAVDLLP 173 (620)
T ss_pred cCcch-HHHHhhHHH-HHHHHHHHHHhccHHHHHHHHHHHHHhhh
Confidence 21100 000001122 33378888889999999999988888763
No 467
>PRK13184 pknD serine/threonine-protein kinase; Reviewed
Probab=46.89 E-value=9.5e+02 Score=33.04 Aligned_cols=71 Identities=15% Similarity=0.046 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Q 000589 998 AKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIIN 1070 (1403)
Q Consensus 998 A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~ 1070 (1403)
-++.+.+|...+.+-.-..--+.|.+|+..++...+. +...--|...|.+|..+|+|+|-+..|.-|++.+
T Consensus 512 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 582 (932)
T PRK13184 512 YEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLHGG--VGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRY 582 (932)
T ss_pred hHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhcCC--CCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhc
Confidence 3455666666654433222235666666666655432 1222345566677778888888888887777664
No 468
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=46.52 E-value=69 Score=39.78 Aligned_cols=82 Identities=22% Similarity=0.214 Sum_probs=59.5
Q ss_pred CCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Q 000589 1054 GDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGL---NQTELALRHMSRALLLLSLSSGPDHPDVAATFINV 1130 (1403)
Q Consensus 1054 G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~---G~~~eAl~~l~rAL~l~~~~~g~d~p~~a~~~~nL 1130 (1403)
+....|+..|.+++... |.....|.|.|.++... |+.-.|+.-...|+.+ +|....+++.|
T Consensus 388 ~~~~~~i~~~s~a~q~~--------~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrl--------n~s~~kah~~l 451 (758)
T KOG1310|consen 388 SIVSGAISHYSRAIQYV--------PDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRL--------NPSIQKAHFRL 451 (758)
T ss_pred HHHHHHHHHHHHHhhhc--------cchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccC--------ChHHHHHHHHH
Confidence 34567777788777653 55666777777777654 3555555555555543 58888999999
Q ss_pred HHHHHHcCCHHHHHHHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEAL 1151 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL 1151 (1403)
+.++..++++.+|+.+...+.
T Consensus 452 a~aL~el~r~~eal~~~~alq 472 (758)
T KOG1310|consen 452 ARALNELTRYLEALSCHWALQ 472 (758)
T ss_pred HHHHHHHhhHHHhhhhHHHHh
Confidence 999999999999999876544
No 469
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=46.49 E-value=4e+02 Score=32.58 Aligned_cols=59 Identities=15% Similarity=-0.096 Sum_probs=41.4
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH--HHHHCCCHHHHHHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL--FYHGLNQTELALRHMS 1106 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~--~~~~~G~~~eAl~~l~ 1106 (1403)
..+...+..++|..|...+.+++.. .+..+.......|..|+. .++..-++++|.++++
T Consensus 135 ~~~r~l~n~~dy~aA~~~~~~L~~r---~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~ 195 (380)
T TIGR02710 135 GYARRAINAFDYLFAHARLETLLRR---LLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLN 195 (380)
T ss_pred HHHHHHHHhcChHHHHHHHHHHHhc---ccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHh
Confidence 3555788999999999999998754 222222333455555544 4567889999999998
No 470
>KOG2460 consensus Signal recognition particle, subunit Srp68 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.31 E-value=4.9e+02 Score=32.77 Aligned_cols=161 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred CCHHHHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHHHHHh---------------cCCCChhHHHHHHHHHHHHHHCC
Q 000589 1035 MHREVANCCRYLAMVL---YHAGDMAGAIMQQHKELIINERC---------------LGLDHPDTAHSYGNMALFYHGLN 1096 (1403)
Q Consensus 1035 ~~p~~a~a~~~LA~iy---~~~G~~~eAi~~~~kAL~i~er~---------------lg~d~p~~~~a~~nLA~~~~~~G 1096 (1403)
.++.+...+.....+. .+.+.+++=+..+++|+.-.+.. .....-..+.+|...-.+.....
T Consensus 275 ~~~kV~~fL~~~~d~~~~l~q~~t~~~K~~llEkala~~edaI~~v~D~~~~d~~~~~~t~~~q~i~aYL~Y~~l~~tis 354 (593)
T KOG2460|consen 275 IDEKVRQFLLQGLDIEPALAQITTYDQKLSLLEKALARCEDAIQNVRDEIKIDEKQRNSTLNGQIILAYLKYNKLLTTIS 354 (593)
T ss_pred ccHHHHHHHHHHHhhcHHhccCCCHhHHHHHHHHHHHHHHHHHHHHhhhcccchHhhhhhhcchHHHHHHHHHHHHHHHh
Q ss_pred CHHHHHHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1097 QTELALRHMSRALLLLSLSSGPD--HPDVAATFINVAMMYQDIGKMDTALR--YLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1097 ~~~eAl~~l~rAL~l~~~~~g~d--~p~~a~~~~nLA~iy~~~g~~deAl~--~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
+...|...+.....-.....+.. ..+....|-++-..+....+...... -|...++.... ...+.-.+.+
T Consensus 355 R~~~~~~n~~~~~ls~~~~~~~k~rpqdl~RLYd~iiknl~e~~elPG~~~D~~l~sqle~~~~------~fkafRC~~i 428 (593)
T KOG2460|consen 355 RNEDAFTNLWNQWLSQQTSDPKKLRPQDLERLYDSIIKNLSEIMELPGLESDKELQSQLELKKL------YFKAFRCFYI 428 (593)
T ss_pred HHHHHHhhhHHHHHHhCcccccccCHHHHHHHHHHHHHHHHHHHhCCCcccchHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhC
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQLG 1201 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~lg 1201 (1403)
|..|...++|.+|+.+|.+|+....+..+
T Consensus 429 A~sY~a~~K~~EAlALy~Ra~sylqe~~~ 457 (593)
T KOG2460|consen 429 AVSYQAKKKYSEALALYVRAYSYLQEVNS 457 (593)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 471
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=46.28 E-value=22 Score=39.66 Aligned_cols=57 Identities=18% Similarity=0.223 Sum_probs=50.8
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1131 AMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1131 A~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
+.+..+.++.+.|.+.|.+|+++. |..+..|+.+|......|+++.|...|++.+++
T Consensus 2 a~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 2 AYMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred cchhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 345667899999999999999986 677889999999999999999999999999876
No 472
>KOG2086 consensus Protein tyrosine phosphatase SHP1/Cofactor for p97 ATPase-mediated vesicle membrane fusion [Nuclear structure]
Probab=46.27 E-value=30 Score=41.35 Aligned_cols=58 Identities=22% Similarity=0.283 Sum_probs=47.8
Q ss_pred ccccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccc
Q 000589 82 HLYPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDY 142 (1403)
Q Consensus 82 ~~~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~ 142 (1403)
-+-.|.|.|++|+.+.++++...||.|||.||..+--.-..++|-|...=+. +.|.|.
T Consensus 304 PtTsIQIRLanG~RlV~~fN~sHTv~DIR~fI~~aRp~~~~~~F~L~~~FPp---k~l~D~ 361 (380)
T KOG2086|consen 304 PTTSIQIRLANGTRLVLKFNHSHTVSDIREFIDTARPGDSSTYFILMMAFPP---KPLSDD 361 (380)
T ss_pred CcceEEEEecCCceeeeeccCcccHHHHHHHHHhcCCCCcCCceeeeecCCC---cccCCc
Confidence 3558999999999999999999999999999999887888888888754321 555553
No 473
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=46.16 E-value=8.2e+02 Score=32.88 Aligned_cols=57 Identities=11% Similarity=-0.049 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH
Q 000589 1045 YLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLLL 1112 (1403)
Q Consensus 1045 ~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l~ 1112 (1403)
.+-.+|...|+|+.|+++.+..-. ..-.++..-|.+|+..++|..|.++|-+.+.-+
T Consensus 363 ~vWk~yLd~g~y~kAL~~ar~~p~-----------~le~Vl~~qAdf~f~~k~y~~AA~~yA~t~~~F 419 (911)
T KOG2034|consen 363 DVWKTYLDKGEFDKALEIARTRPD-----------ALETVLLKQADFLFQDKEYLRAAEIYAETLSSF 419 (911)
T ss_pred HHHHHHHhcchHHHHHHhccCCHH-----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhhH
Confidence 344578899999999988765422 223467788999999999999999988775443
No 474
>cd09034 BRO1_Alix_like Protein-interacting Bro1-like domain of mammalian Alix and related domains. This superfamily includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, and related domains. Alix, HD-PTP, Brox, Bro1 and Rim20 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix, also known as apoptosis-linked gene-2 interacting protein 1 (AIP1), participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP functions in cell migration and endosomal trafficking, Bro1 in endosomal trafficking, and Rim20 in the response to
Probab=46.07 E-value=5.9e+02 Score=30.41 Aligned_cols=151 Identities=13% Similarity=-0.009 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHHHHHhc------------CCCChhHHHHHHHHHHHHHHC
Q 000589 1038 EVANCCRYLAMVLYHAGD----------MAGAIMQQHKELIINERCL------------GLDHPDTAHSYGNMALFYHGL 1095 (1403)
Q Consensus 1038 ~~a~a~~~LA~iy~~~G~----------~~eAi~~~~kAL~i~er~l------------g~d~p~~~~a~~nLA~~~~~~ 1095 (1403)
+.+.+++++|.+|..++. ...|..++++|.-+++-+. .+-++.++.++..+.......
T Consensus 109 E~~~vLfn~aa~~s~~a~~~~~~~~~~~~k~A~~~fq~AAG~F~~l~~~~~~~~~~~~~~Dl~~~~l~~l~~l~LAqAQe 188 (345)
T cd09034 109 ELLSILFNLAALASQLANEKLITGSEEDLKQAIKSLQKAAGYFEYLKEHVLPLPPDELPVDLTEAVLSALSLIMLAQAQE 188 (345)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCccCCHHHHHHHHHHHHHHHHH
Q ss_pred CCHHHHHHHH-HHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCH--HHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Q 000589 1096 NQTELALRHM-SRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKM--DTALRYLQEALKKNERLLGEEHIQTAVCYHAL 1172 (1403)
Q Consensus 1096 G~~~eAl~~l-~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~--deAl~~lekAL~l~~~~~G~~~~~~a~~~~~L 1172 (1403)
--+.+|+..= .+.--+.+.. -.....|..-...+...... ..-...+..-+..... ...+.+++.+
T Consensus 189 ~~~~ka~~~~~~~~~liakLa-----~~~~~~y~~A~~~l~~~~~~~~~~~~~~w~~~v~~K~~------~~~a~a~~~~ 257 (345)
T cd09034 189 CFLLKAEEDKKAKLSLLARLA-----CEAAKYYEEALKCLSGVDLETIKNIPKKWLLFLKWKKC------IFKALAYYYH 257 (345)
T ss_pred HHHHHHHhcccCcHHHHHHHH-----HHHHHHHHHHHHHHhcCCchhhhhhhHHHHHHHHHHHH------HHHHHHHHHH
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1173 AIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1173 A~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
|..+...+++-+|+.+++.|...++..
T Consensus 258 a~~~~e~~~~G~aia~L~~A~~~~~~~ 284 (345)
T cd09034 258 GLKLDEANKIGEAIARLQAALELLKES 284 (345)
T ss_pred HHHhhccccHHHHHHHHHHHHHHHHHH
No 475
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=44.75 E-value=47 Score=27.41 Aligned_cols=25 Identities=20% Similarity=0.365 Sum_probs=23.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFS 1026 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~ 1026 (1403)
+.+++.|+..|+++.|.+.+++.+.
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~ 27 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIE 27 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHH
Confidence 5789999999999999999999885
No 476
>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.
Probab=44.39 E-value=2.3e+02 Score=26.37 Aligned_cols=36 Identities=19% Similarity=0.134 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVKQL 1200 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~l 1200 (1403)
.+..+...|.-+-..|++.+|+.+|+++++.+.+.+
T Consensus 5 ~A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~L~q~~ 40 (75)
T cd02682 5 MARKYAINAVKAEKEGNAEDAITNYKKAIEVLSQIV 40 (75)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHH
Confidence 344555666777789999999999999999988764
No 477
>PF14858 DUF4486: Domain of unknown function (DUF4486)
Probab=44.34 E-value=7.9e+02 Score=31.36 Aligned_cols=72 Identities=13% Similarity=0.053 Sum_probs=55.6
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhC---C-CcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1127 FINVAMMYQDIGKMDTALRYLQEALKKNERLLG---E-EHIQTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1127 ~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G---~-~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
.++++.-+...|.-.++++++.-+....+.... . --+.....|..+..+|.+.|.+.+|....++++.-..+
T Consensus 154 IY~ICr~Lm~~G~s~~vle~L~wa~~cmEssv~L~t~rYL~WR~~Ly~avc~cY~d~~~~~~A~~farraL~ki~e 229 (542)
T PF14858_consen 154 IYTICRHLMTAGHSAKVLEYLLWASICMESSVPLLTVRYLPWRVTLYTAVCQCYEDCQAGEHAEAFARRALAKIDE 229 (542)
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHHHHhcchhhhcchhhHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Confidence 467888888999999999999877655443211 1 12456778899999999999999999999999865443
No 478
>cd09244 BRO1_Rhophilin Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin and related domains. This family contains the Bro1-like domain of RhoA-binding proteins, Rhophilin-1 and -2, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 and -2 bind both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 and -2, contain an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Their PDZ domains have limited homology. Rhophilin-1 and -2 have different ac
Probab=43.91 E-value=6.6e+02 Score=30.38 Aligned_cols=123 Identities=18% Similarity=0.182 Sum_probs=65.6
Q ss_pred HHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHH-----HHHHHHHHHhhhc----cc---------CCCccHHHHHhh
Q 000589 923 WSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQ-----KVGISVTARKYDF----NA---------ATPFETSDILNL 984 (1403)
Q Consensus 923 w~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~-----k~Giql~~~~Y~f----~~---------~~~f~~~dI~~l 984 (1403)
..-+...+...|. +-++.....+..+.-||.-+. ..|+.+..+.|.. .. ..+|.+-|...-
T Consensus 15 ~~~L~~yI~~~Y~-e~~~~y~~~l~~l~~LR~~~~~~~~~~~g~~~L~~YY~qL~~le~RFp~~~~~~~v~F~W~Ds~~~ 93 (350)
T cd09244 15 MEPFKDFILEHYS-EDPSLYEDEIADFTDLRQAMRTPSRDEAGIELLFEYYNQLYFVERRFFPPDRSLGIYFHWYDSLTG 93 (350)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhhCCCCChhHHHHHHHHHHHHHHHHhcCCCccccccceeeeecccCC
Confidence 3446666666665 334445556666666776543 2455554444422 11 124444443221
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHHH
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG--------PMHREVANCCRYLA 1047 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g--------~~~p~~a~a~~~LA 1047 (1403)
.+ +....-....+..++++|-+|.+.| .+++|..+|++|--+++-+.. ...+.+..++..|.
T Consensus 94 ~~-~~q~sl~fEkasVLFNigAl~Sq~aa~~~r~~~eglK~A~~~Fq~AAG~F~~l~e~~~~~ps~Dls~~~L~~L~~Lm 172 (350)
T cd09244 94 VP-SVQRSVAFEKASVLFNIGALYTQIGAKQDRTTEEGIEAAVDAFQRAAGAFNYLRENFSNAPSMDLSPEMLEALIKLM 172 (350)
T ss_pred Cc-cccccHHHHHHHHHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCCHHHHHHHHHHH
Confidence 11 1222223355888899988886543 267788888888766544421 24455555555543
No 479
>cd01795 USP48_C USP ubiquitin-specific protease. The USP (ubiquitin-specific protease) family is one of at least seven deubiquitylating enzyme (DUB) families capable of deconjugating ubiquitin and ubiquitin-like adducts. While the USP's have a conserved catalytic core domain, they differ in their domain architectures. This subfamily, which includes USP31, and USP48, has a carboxy-terminal ubiquitin-like domain in addition to a DUSP (domain of ubiquitin-specific proteases) domain,
Probab=43.87 E-value=78 Score=30.81 Aligned_cols=69 Identities=13% Similarity=0.214 Sum_probs=44.4
Q ss_pred eeEEecCCCChHHHHHHHhhhc----CcceeeeeeEeeeCCCCCCccccccccccccccccCCCccEEEEEe-cCCCHHH
Q 000589 95 KLELQLNPGDSVMDIRQFLLDA----PETCFFTCYDLVLHTKDGSTHHLEDYNEISEVADITTGGCTLEMVA-ALYDDRS 169 (1403)
Q Consensus 95 ~~~l~~~~~~~v~dv~~~l~~~----~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~-~~Y~~~~ 169 (1403)
+..|.|+++++|-++++.|+.. |+.. +|.++|. .--||...|+++ |+.. +++|.|+- +|--+-.
T Consensus 16 ~~~L~V~~~~TVg~LK~lImQ~f~V~P~dQ-----kL~~dG~----~L~DDsrTLssy-Gv~s-gSvl~LlideP~~d~~ 84 (107)
T cd01795 16 EKALLVSANQTLKELKIQIMHAFSVAPFDQ-----NLSIDGK----ILSDDCATLGTL-GVIP-ESVILLKADEPIADYA 84 (107)
T ss_pred CceEEeCccccHHHHHHHHHHHhcCCcccc-----eeeecCc----eeccCCccHHhc-CCCC-CCEEEEEecCCcccHH
Confidence 3567799999999888877755 4433 3555562 334566777777 6777 77877775 5544444
Q ss_pred HHHHH
Q 000589 170 IRAHV 174 (1403)
Q Consensus 170 a~~Hv 174 (1403)
|...|
T Consensus 85 ~~~~~ 89 (107)
T cd01795 85 AMDDV 89 (107)
T ss_pred HHHHH
Confidence 44333
No 480
>cd01760 RBD Ubiquitin-like domain of RBD-like S/T kinases. The ras-binding domain (RBD) of the serine/threonine kinase raf is structurally quite similar to the beta-grasp fold of ubiquitin. A raf-like RBD is also present in RGS12 and other members of a family of GTPase activating proteins and TIAM1, a guanine nucleotide exchange protein.
Probab=43.32 E-value=50 Score=30.29 Aligned_cols=63 Identities=21% Similarity=0.199 Sum_probs=46.0
Q ss_pred cEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCcccccccccccccc
Q 000589 85 PVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVA 149 (1403)
Q Consensus 85 ~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~ 149 (1403)
.++|.+|++..-.+++.|+.+|.|+-.-+...-.-. ..+|.|.+.+.+. ...++-..+++.+.
T Consensus 1 ~~~V~LPng~~t~V~vrpg~ti~d~L~~~c~kr~l~-~~~~~v~~~~~~~-~~~~~~~~d~~~L~ 63 (72)
T cd01760 1 LCRVYLPNGQRTVVPVRPGMSVRDVLAKACKKRGLN-PECCDVFLLGLDE-KKPLDLDTDSSSLA 63 (72)
T ss_pred CEEEECcCCCeEEEEECCCCCHHHHHHHHHHHcCCC-HHHEEEEEecCCC-cCCcCchhhhhhhc
Confidence 368999999999999999999999998888765433 5666677665322 24566666666663
No 481
>PF10858 DUF2659: Protein of unknown function (DUF2659); InterPro: IPR022588 This bacterial family of proteins has no known function.
Probab=42.24 E-value=3.3e+02 Score=29.11 Aligned_cols=103 Identities=16% Similarity=0.061 Sum_probs=72.1
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhH
Q 000589 1002 VEMGKVQLAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDT 1081 (1403)
Q Consensus 1002 ~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~ 1081 (1403)
.++-..-+..|.|.+|-+++.+.++.-+ ..+...+|..+++|.....+-..-+.--.+.+...--...+..|..
T Consensus 97 leqva~kis~~~~~eaK~LlnkIi~nk~------YSeistsYaRi~wc~~vidD~nl~i~dk~kL~kyL~yfdd~~kPFW 170 (220)
T PF10858_consen 97 LEQVAIKISEKKYSEAKQLLNKIIENKE------YSEISTSYARINWCCMVIDDQNLNIQDKEKLIKYLNYFDDEKKPFW 170 (220)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHhhhh------HHHHHHHHHHHHHHHheecccccChhhHHHHHHHHhhccCCCCchH
Confidence 3344455677899999999999888632 3577888999999888775544444444444443333334456667
Q ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Q 000589 1082 AHSYGNMALFYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1082 ~~a~~nLA~~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
+.+-...|..-...|.-.+|+++++..+.
T Consensus 171 atAtI~kaiwdik~nm~~~aeknL~~l~~ 199 (220)
T PF10858_consen 171 ATATIIKAIWDIKNNMKNQAEKNLKNLLA 199 (220)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh
Confidence 77766777778889999999999988775
No 482
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.17 E-value=3.1e+02 Score=31.92 Aligned_cols=134 Identities=14% Similarity=0.050 Sum_probs=70.2
Q ss_pred cCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 000589 1011 EGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMAL 1090 (1403)
Q Consensus 1011 ~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~ 1090 (1403)
.|++=+|...|+..+..+... ..|.......+.-+.+.+..++..-|..+.-..++..+... -.+.....-|++.
T Consensus 19 ~~d~Yeahqm~RTl~fR~~~~--K~~~~aieL~~~ga~~ffk~~Q~~saaDl~~~~le~~eka~---~ad~~~~~anl~~ 93 (312)
T KOG3024|consen 19 LGDYYEAHQMYRTLVFRYTRQ--KAHEDAIELLYDGALCFFKLKQRGSAADLLVLVLEVLEKAE---VADSLLKVANLAE 93 (312)
T ss_pred cccHHHHHHHHHHHHHHHHHH--hhhhhHHHHHHHHHHHHHHhccCCCchhHHHHHHHHHHHHH---hhHhHHHHHHHHH
Confidence 345555555554444333222 12333344444455555555555555555555555544310 0111112245666
Q ss_pred HHHHCCCHHHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 000589 1091 FYHGLNQTELALR-HMSRALLLLSLSSGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEA 1150 (1403)
Q Consensus 1091 ~~~~~G~~~eAl~-~l~rAL~l~~~~~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekA 1150 (1403)
+....+.-+.... +.+++++ |...+|............||..+...+++.+|..+|-.+
T Consensus 94 ll~e~~~~eper~~~v~raik-WS~~~~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll~ 153 (312)
T KOG3024|consen 94 LLGEADPSEPERKTFVRRAIK-WSKEFGEGKYGHPELHALLADKLWTEDNVEEARRHFLLS 153 (312)
T ss_pred HHhhcCCCccHHHHHHHHHHH-HHhhcCCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhhc
Confidence 6665555555554 4455554 444443322223345778999999999999999998643
No 483
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=42.16 E-value=2.4e+02 Score=26.23 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Q 000589 1168 CYHALAIAFNCMGAFKLSHQHEKKTYDILVKQ 1199 (1403)
Q Consensus 1168 ~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~~ 1199 (1403)
.+...|.-+-..|+|++|+.+|+++++.+...
T Consensus 8 ~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~~ 39 (76)
T cd02681 8 QFARLAVQRDQEGRYSEAVFYYKEAAQLLIYA 39 (76)
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHH
Confidence 34445555667899999999999999998773
No 484
>KOG3024 consensus Uncharacterized conserved protein [Function unknown]
Probab=42.04 E-value=3.2e+02 Score=31.84 Aligned_cols=63 Identities=14% Similarity=0.128 Sum_probs=39.7
Q ss_pred HHHHHHHHHcCCHHHHH-HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 000589 1128 INVAMMYQDIGKMDTAL-RYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK 1191 (1403)
Q Consensus 1128 ~nLA~iy~~~g~~deAl-~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk 1191 (1403)
.|++.+....+.-+..+ .+.+.+++...+. |.........+..||..++..+++.+|..||-.
T Consensus 89 anl~~ll~e~~~~eper~~~v~raikWS~~~-~~~k~G~p~lH~~la~~l~~e~~~~~a~~HFll 152 (312)
T KOG3024|consen 89 ANLAELLGEADPSEPERKTFVRRAIKWSKEF-GEGKYGHPELHALLADKLWTEDNVEEARRHFLL 152 (312)
T ss_pred HHHHHHHhhcCCCccHHHHHHHHHHHHHhhc-CCCCCCCHHHHHHHHHHHHhcccHHHHHhHhhh
Confidence 34455444444333333 4566666665553 222234456788899999999999999998854
No 485
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=41.84 E-value=6.9e+02 Score=29.96 Aligned_cols=96 Identities=14% Similarity=0.128 Sum_probs=66.9
Q ss_pred HHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 000589 1009 LAEGLLSEAYTLFSEAFSILQQVTGPMHREVANCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNM 1088 (1403)
Q Consensus 1009 ~~~G~~eeA~~~l~eAL~l~~~i~g~~~p~~a~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nL 1088 (1403)
.+.++.++|++++++..+.....-.+ ..+..+...+|.++...|+..++...+...-.......+.. +..-..|+.+
T Consensus 86 ~~~~D~~~al~~Le~i~~~~~~~~e~--~av~~~~t~~~r~~L~i~DLk~~kk~ldd~~~~ld~~~~v~-~~Vh~~fY~l 162 (380)
T KOG2908|consen 86 EQISDKDEALEFLEKIIEKLKEYKEP--DAVIYILTEIARLKLEINDLKEIKKLLDDLKSMLDSLDGVT-SNVHSSFYSL 162 (380)
T ss_pred HHhccHHHHHHHHHHHHHHHHhhccc--hhHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcccCCC-hhhhhhHHHH
Confidence 34458999999999998876654222 25677788899999999999999999998888776655543 3344455555
Q ss_pred HH-HHHHCCCHHHHHHHHHHHHH
Q 000589 1089 AL-FYHGLNQTELALRHMSRALL 1110 (1403)
Q Consensus 1089 A~-~~~~~G~~~eAl~~l~rAL~ 1110 (1403)
+. +|...|++.. +|+.++.
T Consensus 163 ssqYyk~~~d~a~---yYr~~L~ 182 (380)
T KOG2908|consen 163 SSQYYKKIGDFAS---YYRHALL 182 (380)
T ss_pred HHHHHHHHHhHHH---HHHHHHH
Confidence 54 4555677664 4444543
No 486
>PF14560 Ubiquitin_2: Ubiquitin-like domain; PDB: 1WJN_A 2KJ6_A 2KJR_A 1V6E_A 1T0Y_A.
Probab=41.56 E-value=67 Score=30.29 Aligned_cols=77 Identities=17% Similarity=0.209 Sum_probs=51.6
Q ss_pred ccEEEeCCCCc--eeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeC-CCCCCc-cc-cccccccccccccCCCccEE
Q 000589 84 YPVTVKTQSNE--KLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLH-TKDGST-HH-LEDYNEISEVADITTGGCTL 158 (1403)
Q Consensus 84 ~~v~v~~p~~~--~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~-~~~~~~-~~-l~~~~e~~~~~~~~~~~~~l 158 (1403)
+.|+|.-+..+ .++..+.++.+|.+|++.|.-...+. -.+..|.+. ..++.. .. .+|...|+.+ |+.+ |+.|
T Consensus 2 v~l~It~~~~~~~~~ekr~~~~~Tv~eLK~kl~~~~Gi~-~~~m~L~l~~~~~~~~~~~~~dd~~~L~~y-~~~d-g~~i 78 (87)
T PF14560_consen 2 VKLFITSSNSKQRSVEKRFPKSITVSELKQKLEKLTGIP-PSDMRLQLKSDKDDSKIEELDDDDATLGSY-GIKD-GMRI 78 (87)
T ss_dssp EEEEEEESSSSSSEEEEEEETTSBHHHHHHHHHHHHTS--TTTEEEEEE-TSSSSEEEESSGSSSBCCHH-T-ST-TEEE
T ss_pred EEEEEEeCCCCCeeEEEEcCCCCCHHHHHHHHHHHhCCC-cccEEEEEEecCCCccccccCCCccEeecC-CCCC-CCEE
Confidence 56778877764 79999999999999999998775433 445556655 223221 22 3456666666 5888 8999
Q ss_pred EEEec
Q 000589 159 EMVAA 163 (1403)
Q Consensus 159 ~~v~~ 163 (1403)
.|+..
T Consensus 79 ~V~D~ 83 (87)
T PF14560_consen 79 HVVDT 83 (87)
T ss_dssp EEEE-
T ss_pred EEEeC
Confidence 98753
No 487
>cd09248 BRO1_Rhophilin_1 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-1. This subfamily contains the Bro1-like domain of the RhoA-binding protein, Rhophilin-1. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-1 binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-1 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. The Drosophila knockout of the Rhophilin-1 is embryonic lethal, suggesting an essential role i
Probab=41.40 E-value=7.5e+02 Score=30.29 Aligned_cols=107 Identities=16% Similarity=0.195 Sum_probs=57.4
Q ss_pred HHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHHH-----HHHHHHHHhhhc----c---------cCCCccHHHHHhh
Q 000589 923 WSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQK-----VGISVTARKYDF----N---------AATPFETSDILNL 984 (1403)
Q Consensus 923 w~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~k-----~Giql~~~~Y~f----~---------~~~~f~~~dI~~l 984 (1403)
-.-+.+.|...|. +-++.+...+..+.-||.-+.. .|+.+..+.|.. . ...+|++-|...-
T Consensus 15 ~~pL~~yI~~~Y~-q~~~~y~~dl~~l~~LR~~~~~~~~~~sgle~L~~YY~qL~~Le~RFp~~~~~~~v~FtW~Daf~~ 93 (384)
T cd09248 15 PTPLKELISEHFG-EDGTSYEAEIRELEDLRQAMRTPSRSEAGLELLMAYYNQLCFLDARFFPPAKSLGLFFHWYDSLTG 93 (384)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHhcCCCCcccccceeeeeccCCC
Confidence 3445555666654 3344444455556666654321 234443333321 1 1234555554322
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcCC---------HHHHHHHHHHHHHHHHHh
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEGL---------LSEAYTLFSEAFSILQQV 1031 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G~---------~eeA~~~l~eAL~l~~~i 1031 (1403)
.+ +....-....+..+|++|-+|.+.|- ++.|..+|+.|--.+..+
T Consensus 94 ~~-~~q~sl~FEKasVLFNigAL~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L 148 (384)
T cd09248 94 VP-AQQRALAFEKGSVLFNIGALHTQIGARQDRSCTEGTRRAIDAFQRAAGAFSLL 148 (384)
T ss_pred Cc-cccccHHHHHHHHHHhHHHHHHHHHhhccCCChHHHHHHHHHHHHHHHHHHHH
Confidence 11 22223344568899999998876553 678889999887765444
No 488
>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.
Probab=41.29 E-value=1.6e+02 Score=27.40 Aligned_cols=38 Identities=26% Similarity=0.280 Sum_probs=31.8
Q ss_pred hhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Q 000589 995 CSEAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQVT 1032 (1403)
Q Consensus 995 ~~~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~i~ 1032 (1403)
...|..+...|.-+-..|+|++|+.+|.++++.+....
T Consensus 3 ~~~a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~l~~~l 40 (77)
T cd02683 3 ELAAKEVLKRAVELDQEGRFQEALVCYQEGIDLLMQVL 40 (77)
T ss_pred hHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH
Confidence 34567777888888899999999999999999987643
No 489
>PF09379 FERM_N: FERM N-terminal domain ; InterPro: IPR018979 This domain is the N-terminal ubiquitin-like structural domain of the FERM domain. The FERM domain (F for 4.1 protein, E for ezrin, R for radixin and M for moesin) is a widespread protein module involved in localising proteins to the plasma membrane []. FERM domains are found in a number of cytoskeletal-associated proteins that associate with various proteins at the interface between the plasma membrane and the cytoskeleton. The FERM domain is located at the N terminus of the majority of FERM-containing proteins [, ], which includes: Band 4.1, which links the spectrin-actin cytoskeleton of erythrocytes to the plasma membrane. Ezrin, a component of the undercoat of the microvilli plasma membrane. Moesin, which is probably involved in binding major cytoskeletal structures to the plasma membrane. Radixin, which is involved in the binding of the barbed end of actin filaments to the plasma membrane in the undercoat of the cell- to-cell adherens junction. Talin, a cytoskeletal protein concentrated in regions of cell-substratum contact and, in lymphocytes, of cell-cell contacts. Filopodin, a slime mold protein that binds actin and which is involved in the control of cell motility and chemotaxis. Merlin (or schwannomin). Protein NBL4. Unconventional myosins X, VIIa and XV, which are mutated in congenital deafness. Focal-adhesion kinases (FAKs), cytoplasmic protein tyrosine kinases involved in signalling through integrins. Janus tyrosine kinases (JAKs), cytoplasmic tyrosine kinases that are non-covalently associated with the cytoplasmic tails of receptors for cytokines or polypeptidic hormones. Non-receptor tyrosine-protein kinase TYK2. Protein-tyrosine phosphatases PTPN3 and PTPN4, enzyme that appear to act at junctions between the membrane and the cytoskeleton. Protein-tyrosine phosphatases PTPN14 and PTP-D1, PTP-RL10 and PTP2E. Caenorhabditis elegans protein phosphatase ptp-1. Ezrin, moesin, and radixin are highly related proteins (ERM protein family), but the other proteins in which the FERM domain is found do not share any region of similarity outside of this domain. ERM proteins are made of three domains, the FERM domain, a central helical domain and a C-terminal tail domain, which binds F-actin. The amino-acid sequence of the FERM domain is highly conserved among ERM proteins and is responsible for membrane association by direct binding to the cytoplasmic domain or tail of integral membrane proteins. ERM proteins are regulated by an intramolecular association of the FERM and C-terminal tail domains that masks their binding sites for other molecules. For cytoskeleton-membrane cross-linking, the dormant molecules becomes activated and the FERM domain attaches to the membrane by binding specific membrane proteins, while the last 34 residues of the tail bind actin filaments. Aside from binding to membranes, the activated FERM domain of ERM proteins can also bind the guanine nucleotide dissociation inhibitor of Rho GTPase (RhoDGI), which suggests that in addition to functioning as a cross-linker, ERM proteins may influence Rho signalling pathways. The crystal structure of the FERM domain reveals that it is composed of three structural modules (F1, F2, and F3) that together form a compact clover-shaped structure []. The FERM domain has also been called the amino-terminal domain, the 30kDa domain, 4.1N30, the membrane-cytoskeletal-linking domain, the ERM-like domain, the ezrin-like domain of the band 4.1 superfamily, the conserved N-terminal region, and the membrane attachment domain [].; PDB: 1EF1_B 1SGH_A 1E5W_A 2KC2_A 2KMA_A 3IVF_A 1H4R_B 3U8Z_A 1ISN_A 3BIN_A ....
Probab=41.16 E-value=67 Score=29.46 Aligned_cols=76 Identities=16% Similarity=0.153 Sum_probs=53.0
Q ss_pred EeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeee-CCCCCCccccccccccccccccCCCccEEEEEec
Q 000589 88 VKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVL-HTKDGSTHHLEDYNEISEVADITTGGCTLEMVAA 163 (1403)
Q Consensus 88 v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~-~~~~~~~~~l~~~~e~~~~~~~~~~~~~l~~v~~ 163 (1403)
|.+|+++..++.+.+..+++|+-+.+...-.--..-=|.|.+ ...+|...-|+.-..|.+.......+++|.+.-.
T Consensus 1 V~llD~~~~~~~v~~~~t~~~l~~~v~~~l~l~e~~~FgL~~~~~~~~~~~wL~~~k~l~~q~~~~~~~~~l~frvk 77 (80)
T PF09379_consen 1 VRLLDGTTKTFEVDPKTTGQDLLEQVCDKLGLKEKEYFGLQYQVDKDGEHHWLDLDKKLKKQLKKNNPPFTLYFRVK 77 (80)
T ss_dssp EEESSEEEEEEEEETTSBHHHHHHHHHHHHTTSSGGGEEEEE-EBTTSSEEEE-SSSBGGGSTBTSSSSEEEEEEES
T ss_pred CCCcCCCcEEEEEcCCCcHHHHHHHHHHHcCCCCccEEEEEEeecCCCcceeccCcccHHHHcCCCCCCEEEEEEEE
Confidence 789999999999999999999999888775544455588888 3344554557777777766433223566665543
No 490
>cd06409 PB1_MUG70 The MUG70 protein is a product of the meiotically up-regulated gene 70 which has a role in meiosis and harbors a PB1 domain. The PB1 domain is a modular domain mediating specific protein-protein interactions which play a role in many critical cell processes such as osteoclastogenesis, angiogenesis, early cardiovascular development, and cell polarity. A canonical PB1-PB1 interaction, which involves heterodimerization of two PB1 domains, is required for the formation of macromolecular signaling complexes ensuring specificity and fidelity during cellular signaling. The interaction between two PB1 domains depends on the type of PB1. There are three types of PB1 domains: type I which contains an OPCA motif, acidic amino acid cluster, type II which contains a basic cluster, and type I/II which contains both an OPCA motif and a basic cluster. Interactions of PB1 domains with other protein domains have been described as noncanonical PB1-interactions. The PB1 domain module is
Probab=41.13 E-value=45 Score=31.71 Aligned_cols=57 Identities=16% Similarity=0.303 Sum_probs=45.8
Q ss_pred ccEEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceee--eeeEeeeCCCCCCccccc
Q 000589 84 YPVTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFF--TCYDLVLHTKDGSTHHLE 140 (1403)
Q Consensus 84 ~~v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~--t~~~l~~~~~~~~~~~l~ 140 (1403)
|+++.+.|.|...-+++.|++.+.++++.++..-..--. +.|.|.|-.-+|-+..|-
T Consensus 1 f~FK~~~~~GrvhRf~~~~s~~~~~L~~~I~~Rl~~d~~~~~~~~L~YlDDEgD~VllT 59 (86)
T cd06409 1 FAFKFKDPKGRVHRFRLRPSESLEELRTLISQRLGDDDFETHLYALSYVDDEGDIVLIT 59 (86)
T ss_pred CcEEeeCCCCCEEEEEecCCCCHHHHHHHHHHHhCCccccCCcccEEEEcCCCCEEEEe
Confidence 678889999999999999999999999999888755544 789999877555544443
No 491
>cd02681 MIT_calpain7_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules. This sub-family of MIT domains is found in the nuclear thiol protease PalBH. The molecular function of the MIT domain is unclear.
Probab=40.28 E-value=1.7e+02 Score=27.24 Aligned_cols=34 Identities=26% Similarity=0.288 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 997 EAKNLVEMGKVQLAEGLLSEAYTLFSEAFSILQQ 1030 (1403)
Q Consensus 997 ~A~~l~~lG~~~~~~G~~eeA~~~l~eAL~l~~~ 1030 (1403)
.|..+...|.-+-..|+|++|+.+|.++++.+..
T Consensus 5 ~Ai~~a~~Ave~D~~g~y~eA~~~Y~~aie~l~~ 38 (76)
T cd02681 5 DAVQFARLAVQRDQEGRYSEAVFYYKEAAQLLIY 38 (76)
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHH
Confidence 4667777888888999999999999999999766
No 492
>PF13881 Rad60-SLD_2: Ubiquitin-2 like Rad60 SUMO-like; PDB: 1SE9_A 1WGH_A 2GOW_A.
Probab=40.19 E-value=1.2e+02 Score=30.35 Aligned_cols=76 Identities=17% Similarity=0.263 Sum_probs=50.1
Q ss_pred ccEEEeCCCCc-eeEEecCCCChHHHHHHHhhhc-Cc-----ceeeeeeEeeeCCCCCCcccccccccccccc---ccC-
Q 000589 84 YPVTVKTQSNE-KLELQLNPGDSVMDIRQFLLDA-PE-----TCFFTCYDLVLHTKDGSTHHLEDYNEISEVA---DIT- 152 (1403)
Q Consensus 84 ~~v~v~~p~~~-~~~l~~~~~~~v~dv~~~l~~~-~~-----t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~---~~~- 152 (1403)
+.|+..+.+|. .-.+.+.+.++|.+|++.|... |+ ---.....|.+.| +.|+|-..|++.. |-.
T Consensus 3 i~lkf~l~~G~d~~~~~~~~~~TV~~lKe~i~~~WP~d~~~~p~s~~~lRLI~~G-----riL~d~~tL~~~~~~~~~~~ 77 (111)
T PF13881_consen 3 IELKFRLADGKDIGPFRFDPSTTVADLKERIWAEWPEDWEERPKSPSDLRLIYAG-----RILEDNKTLSDCRLPSGETP 77 (111)
T ss_dssp EEEEEEETTS-EEEEEEE-TTSBHHHHHHHHHHSSSTTSSSTT-SGGGEEEEETT-----EEE-SSSBTGGGT--TTSET
T ss_pred EEEEEEEeCCCcccccccCccChHHHHHHHHHHHCccccccCCCChhhEEEEeCC-----eecCCcCcHHHhCCCCCCCC
Confidence 46677778886 7888999999999999998743 21 1234567888899 8999999999882 111
Q ss_pred CCccEEEEEecC
Q 000589 153 TGGCTLEMVAAL 164 (1403)
Q Consensus 153 ~~~~~l~~v~~~ 164 (1403)
....+++||-.|
T Consensus 78 ~~~~vmHlvvrp 89 (111)
T PF13881_consen 78 GGPTVMHLVVRP 89 (111)
T ss_dssp T--EEEEEEE-S
T ss_pred CCCEEEEEEecC
Confidence 112566666544
No 493
>smart00455 RBD Raf-like Ras-binding domain.
Probab=40.16 E-value=66 Score=29.32 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=45.8
Q ss_pred EEEeCCCCceeEEecCCCChHHHHHHHhhhcCcceeeeeeEeeeCCCCCCccccccccccccccc
Q 000589 86 VTVKTQSNEKLELQLNPGDSVMDIRQFLLDAPETCFFTCYDLVLHTKDGSTHHLEDYNEISEVAD 150 (1403)
Q Consensus 86 v~v~~p~~~~~~l~~~~~~~v~dv~~~l~~~~~t~~~t~~~l~~~~~~~~~~~l~~~~e~~~~~~ 150 (1403)
+.|.+|++....+++.|+.+|.|+-.-+...-.- ...++.+.+.|.+ ..|+=-..++.++|
T Consensus 2 ~~v~LP~~~~~~V~vrpg~tl~e~L~~~~~kr~l-~~~~~~v~~~g~~---k~ldl~~~~~~l~~ 62 (70)
T smart00455 2 CKVHLPDNQRTVVKVRPGKTVRDALAKALKKRGL-NPECCVVRLRGEK---KPLDLNQPISSLDG 62 (70)
T ss_pred eEEECCCCCEEEEEECCCCCHHHHHHHHHHHcCC-CHHHEEEEEcCCC---cceecCCccccccC
Confidence 5789999999999999999999998888776554 3555556665422 66776667776654
No 494
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=39.37 E-value=34 Score=38.20 Aligned_cols=56 Identities=18% Similarity=0.212 Sum_probs=50.3
Q ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1048 MVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1048 ~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
......++.+.|.+.|.+|+.+. |+....+..+|......|+++.|...|++.+++
T Consensus 3 ~~~~~~~D~~aaaely~qal~la--------p~w~~gwfR~g~~~ekag~~daAa~a~~~~L~l 58 (287)
T COG4976 3 YMLAESGDAEAAAELYNQALELA--------PEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLEL 58 (287)
T ss_pred chhcccCChHHHHHHHHHHhhcC--------chhhhhhhhcchhhhhcccHHHHHHHHHHHHcC
Confidence 44567799999999999999984 788899999999999999999999999999976
No 495
>cd09243 BRO1_Brox_like Protein-interacting Bro1-like domain of human Brox1 and related proteins. This family contains the Bro1-like domain of a single-domain protein, human Brox, and related domains. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind components of the ESCRT-III complex: CHMP4 in the case of Brox. Human Brox can bind to human immunodeficiency virus type 1 (
Probab=39.25 E-value=7.6e+02 Score=29.91 Aligned_cols=35 Identities=9% Similarity=-0.036 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Q 000589 1164 QTAVCYHALAIAFNCMGAFKLSHQHEKKTYDILVK 1198 (1403)
Q Consensus 1164 ~~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i~~~ 1198 (1403)
..+.+++..|..+...+++-+|+..++.|...+++
T Consensus 246 f~A~A~y~~a~~l~e~~k~GeaIa~L~~A~~~~k~ 280 (353)
T cd09243 246 YLAYAYCYHGETLLAKDKCGEAIRSLQESEKLYNK 280 (353)
T ss_pred HHHHHHHHHHHHhHhcchHHHHHHHHHHHHHHHHH
Confidence 34666777788777788888888888888776543
No 496
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=39.06 E-value=60 Score=37.65 Aligned_cols=58 Identities=19% Similarity=0.137 Sum_probs=48.6
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Q 000589 1046 LAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQTELALRHMSRALLL 1111 (1403)
Q Consensus 1046 LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~~eAl~~l~rAL~l 1111 (1403)
.|.-....|+.++|..+|+.|+.+. |...+++..+|.+....++.-+|-.+|-+|+.+
T Consensus 122 ~A~~~~~~Gk~ekA~~lfeHAlala--------P~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALti 179 (472)
T KOG3824|consen 122 AAGRSRKDGKLEKAMTLFEHALALA--------PTNPQILIEMGQFREMHNEIVEADQCYVKALTI 179 (472)
T ss_pred HHHHHHhccchHHHHHHHHHHHhcC--------CCCHHHHHHHhHHHHhhhhhHhhhhhhheeeee
Confidence 3444567899999999999999983 555667888999999999999999999999875
No 497
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=38.92 E-value=3.9e+02 Score=36.12 Aligned_cols=187 Identities=10% Similarity=0.037 Sum_probs=93.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHHCCCH--HHHHHHHHHHHHHHH----h
Q 000589 1041 NCCRYLAMVLYHAGDMAGAIMQQHKELIINERCLGLDHPDTAHSYGNMALFYHGLNQT--ELALRHMSRALLLLS----L 1114 (1403)
Q Consensus 1041 ~a~~~LA~iy~~~G~~~eAi~~~~kAL~i~er~lg~d~p~~~~a~~nLA~~~~~~G~~--~eAl~~l~rAL~l~~----~ 1114 (1403)
.-|..|+.+|...|++++|+.++++...-.. .........+-.+-.++...+.. +-..+|..-.+.-.. +
T Consensus 505 ~~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~----~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~ 580 (877)
T KOG2063|consen 505 KKYRELIELYATKGMHEKALQLLRDLVDEDS----DTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQ 580 (877)
T ss_pred ccHHHHHHHHHhccchHHHHHHHHHHhcccc----ccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhhee
Confidence 3578899999999999999999999876431 01122233333444444444444 444444444332110 1
Q ss_pred hcCCCCHHHHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHH--------cCCHHHH
Q 000589 1115 SSGPDHPDVAATFI-NVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNC--------MGAFKLS 1185 (1403)
Q Consensus 1115 ~~g~d~p~~a~~~~-nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~--------~Gd~~eA 1185 (1403)
++-.+....+.... ..-.-|......+-++.|++.++...... ....+..++..|.. .++-++|
T Consensus 581 Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~-------~~~lht~ll~ly~e~v~~~~~~~~kg~e~ 653 (877)
T KOG2063|consen 581 IFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLT-------STLLHTVLLKLYLEKVLEQASTDGKGEEA 653 (877)
T ss_pred eeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhcccc-------chHHHHHHHHHHHHHHhhccCchhccccc
Confidence 11111221111111 11223456778888999999988765321 11112222222221 2233455
Q ss_pred HHH-HHHHHHHHHHHhCCCCHHHH-HHHHHHHHHHHHHHHHHHhhcHHHHHHHHH
Q 000589 1186 HQH-EKKTYDILVKQLGEEDSRTK-DSQNWMKTFKMRELQMNVQKQKGQAFNAAS 1238 (1403)
Q Consensus 1186 i~~-lkkAl~i~~~~lg~~~~~t~-~a~~~La~l~~r~~~~~~qg~~~eAi~~l~ 1238 (1403)
.+. +++-+..+......-+|... +-....+.+..++......++.++|+..+-
T Consensus 654 ~E~~~rekl~~~l~~s~~Y~p~~~L~~~~~~~l~ee~aill~rl~khe~aL~Iyv 708 (877)
T KOG2063|consen 654 PETTVREKLLDFLESSDLYDPQLLLERLNGDELYEERAILLGRLGKHEEALHIYV 708 (877)
T ss_pred hhhhHHHHHHHHhhhhcccCcchhhhhccchhHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555 33333333333333333332 222223333334555567888888888776
No 498
>cd09246 BRO1_Alix_like_1 Protein-interacting, N-terminal, Bro1-like domain of an Uncharacterized family of the BRO1_Alix_like superfamily. This domain family is comprised of uncharacterized proteins. It belongs to the BRO1_Alix_like superfamily which includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20 and Rim23 interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Alix participates in membrane remodeling processes during the budding of enveloped viruses, vesicle budding inside late endosomal multivesicular bodies (MVBs), and the abscission reactions of mammalian cell division. It also functions in apoptosis. HD-PTP and Bro
Probab=38.89 E-value=7.5e+02 Score=29.91 Aligned_cols=31 Identities=10% Similarity=-0.082 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Q 000589 1165 TAVCYHALAIAFNCMGAFKLSHQHEKKTYDI 1195 (1403)
Q Consensus 1165 ~a~~~~~LA~~y~~~Gd~~eAi~~lkkAl~i 1195 (1403)
.+.+++..|..+...+++-+|+..++.|...
T Consensus 246 ~A~A~~~~a~~~~~~~k~GeaIa~L~~A~~~ 276 (353)
T cd09246 246 RAEALYRAAKDLHEKEDIGEEIARLRAASDA 276 (353)
T ss_pred HHHHHHHHHHHhHHhcchHHHHHHHHHHHHH
Confidence 4556667777777777888888888777653
No 499
>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]
Probab=38.61 E-value=3.6e+02 Score=34.43 Aligned_cols=119 Identities=13% Similarity=0.133 Sum_probs=77.2
Q ss_pred cCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH-HHH
Q 000589 1116 SGPDHPDVAATFINVAMMYQDIGKMDTALRYLQEALKKNERLLGEEHIQTAVCYHALAIAFNCMGAFKLSHQHEKK-TYD 1194 (1403)
Q Consensus 1116 ~g~d~p~~a~~~~nLA~iy~~~g~~deAl~~lekAL~l~~~~~G~~~~~~a~~~~~LA~~y~~~Gd~~eAi~~lkk-Al~ 1194 (1403)
+++.+|...-... +...+...+....+.-.+..++... +..+.++.+||.++...|..-.+...+.+ +..
T Consensus 60 ~~~~~~~llla~~-lsi~~~~~~~~~~~~~~~~~~l~~~--------~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~ 130 (620)
T COG3914 60 INDVNPELLLAAF-LSILLAPLADSTLAFLAKRIPLSVN--------PENCPAVQNLAAALELDGLQFLALADISEIAEW 130 (620)
T ss_pred cCCCCHHHHHHHH-HHhhccccccchhHHHHHhhhHhcC--------cccchHHHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 4667788766666 8888888898888877777776643 55677888999988888777666655544 333
Q ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHHHHHhhChHHH
Q 000589 1195 ILVKQLGEEDSRTKDSQNWMKTFKMRELQMNVQKQKGQAFNAASTQKAIDILKAHPDLI 1253 (1403)
Q Consensus 1195 i~~~~lg~~~~~t~~a~~~La~l~~r~~~~~~qg~~~eAi~~l~~qkALei~~~~p~~~ 1253 (1403)
+ .+...+....+-.+|..+++....++..++...+. ++.++...+|...
T Consensus 131 ~--------~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l~--~~~d~~p~~~~~~ 179 (620)
T COG3914 131 L--------SPDNAEFLGHLIRFYQLGRYLKLLGRTAEAELALE--RAVDLLPKYPRVL 179 (620)
T ss_pred c--------CcchHHHHhhHHHHHHHHHHHHHhccHHHHHHHHH--HHHHhhhhhhhhH
Confidence 2 22333444444344434444577777777777776 6667666555433
No 500
>cd09249 BRO1_Rhophilin_2 Protein-interacting Bro1-like domain of RhoA-binding protein Rhophilin-2. This subfamily contains the Bro1-like domain of RhoA-binding protein, Rhophilin-2. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domain of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding protein Rhophilin-1, Brox, Bro1 and Rim20 (also known as PalA) from Saccharomyces cerevisiae, Ustilago maydis Rim23 (also known as PalC), and related domains. Rhophilin-2, binds both GDP- and GTP-bound RhoA. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. In addition to this Bro1-like domain, Rhophilin-2 contains an N-terminal Rho-binding domain and a C-terminal PDZ (PS.D.-95, Disc-large, ZO-1) domain. Roles for Rhophilin-2 may include limiting stress fiber formation or increasing the turnover of F-
Probab=38.22 E-value=8.4e+02 Score=29.91 Aligned_cols=122 Identities=17% Similarity=0.201 Sum_probs=65.4
Q ss_pred HHHHHHHHHHHccccCCccHHHhHHHHHHHHHHHHH-----HHHHHHHHhhhc----cc---------CCCccHHHHHhh
Q 000589 923 WSDLKEFAKLKYQFELPEDARLWVKKVSVMRNLCQK-----VGISVTARKYDF----NA---------ATPFETSDILNL 984 (1403)
Q Consensus 923 w~~I~~~~~~rf~y~l~~~~~~~~~~~~lLr~i~~k-----~Giql~~~~Y~f----~~---------~~~f~~~dI~~l 984 (1403)
-.-+.+.+...|. +-++.+...+..+.-||.-|.. .|+.+..+.|.. .. ..+|.+-|...
T Consensus 15 ~~pL~~yI~~~Y~-q~~~~y~~dl~~l~~LR~~~~~~~~~~sg~e~L~~YY~qL~~Le~RFp~~~~~~~v~FtW~Dsf~- 92 (385)
T cd09249 15 SVPLKDFILEHYS-EDGSEYEDEIADLMDLRQACRTPSRDEAGVELLMSYFSQLGFLENRFFPPTRQMGILFTWYDSFT- 92 (385)
T ss_pred HHHHHHHHHHHcC-CCHHHHHHHHHHHHHHHHHhcCCCCChhHHHHHHHHHHHHHHHHhhCCCCcccccceeeeeccCC-
Confidence 3446666666665 4344444556666666665522 344443333321 11 12444444432
Q ss_pred hhhhhhcCCchhHHHHHHHHHHHHHHcC---------CHHHHHHHHHHHHHHHHHhcC--------CCCHHHHHHHHHH
Q 000589 985 QPVVKHSVPICSEAKNLVEMGKVQLAEG---------LLSEAYTLFSEAFSILQQVTG--------PMHREVANCCRYL 1046 (1403)
Q Consensus 985 ~pvvK~~~~~~~~A~~l~~lG~~~~~~G---------~~eeA~~~l~eAL~l~~~i~g--------~~~p~~a~a~~~L 1046 (1403)
...+...+-....+..+|++|-+|.+.| -++.|..+|+.|--++.-+.. ...+.+..++..|
T Consensus 93 ~~~~~q~sl~fEkasVLFNigAl~Sqlaa~~~r~t~eGlK~A~~~FQ~AAG~F~~L~e~~~~~ps~Dls~~~L~~L~~L 171 (385)
T cd09249 93 GVPVSQQNLLLEKASILFNIGALYTQIGTRCNRQTQAGLESAVDAFQRAAGVLNYLKETFTHTPSYDMSPAMLSVLVKM 171 (385)
T ss_pred CCccccccHHHHHHHHHHhHHHHHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHH
Confidence 1122233334456888999998887655 267888999988776544321 2445555555544
Done!