Query 000591
Match_columns 1402
No_of_seqs 385 out of 664
Neff 5.0
Searched_HMMs 46136
Date Mon Apr 1 20:13:30 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000591.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000591hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5602 SIN3 Histone deacetyla 100.0 1E-147 3E-152 1305.9 53.6 926 68-1400 118-1118(1163)
2 smart00761 HDAC_interact Histo 100.0 2.3E-43 4.9E-48 339.0 7.0 100 494-593 1-101 (102)
3 PF08295 Sin3_corepress: Sin3 100.0 1.7E-41 3.7E-46 327.9 7.7 100 494-593 1-100 (101)
4 KOG4204 Histone deacetylase co 100.0 4.8E-39 1E-43 352.5 17.8 159 74-232 15-197 (231)
5 KOG4204 Histone deacetylase co 99.8 4.2E-19 9.2E-24 195.7 17.2 178 157-430 14-193 (231)
6 COG5602 SIN3 Histone deacetyla 99.8 4.6E-18 9.9E-23 205.5 18.1 211 157-430 123-335 (1163)
7 PF02671 PAH: Paired amphipath 99.3 1.6E-12 3.6E-17 110.2 5.0 47 96-142 1-47 (47)
8 PF02671 PAH: Paired amphipath 99.2 1.4E-11 3.1E-16 104.5 6.0 47 180-226 1-47 (47)
9 PTZ00146 fibrillarin; Provisio 95.1 0.031 6.8E-07 65.0 6.1 8 485-492 265-272 (293)
10 KOG3915 Transcription regulato 93.7 0.055 1.2E-06 64.8 3.7 11 180-190 201-211 (641)
11 KOG3973 Uncharacterized conser 93.4 0.081 1.8E-06 61.6 4.5 8 17-24 309-316 (465)
12 PLN03138 Protein TOC75; Provis 92.4 0.13 2.9E-06 66.7 4.7 29 382-412 282-310 (796)
13 KOG3973 Uncharacterized conser 91.8 0.21 4.6E-06 58.4 5.0 6 19-24 300-305 (465)
14 PLN03138 Protein TOC75; Provis 91.1 0.2 4.3E-06 65.0 4.4 15 197-211 181-195 (796)
15 PHA00370 III attachment protei 90.2 1 2.2E-05 51.1 8.3 13 81-93 148-160 (297)
16 KOG3915 Transcription regulato 89.0 0.33 7.2E-06 58.5 3.6 11 382-392 201-211 (641)
17 PHA00370 III attachment protei 87.7 0.6 1.3E-05 52.9 4.3 16 161-176 257-272 (297)
18 PF02084 Bindin: Bindin; Inte 83.7 11 0.00024 42.6 11.5 8 128-135 138-145 (238)
19 COG4371 Predicted membrane pro 82.1 1.7 3.6E-05 49.4 4.5 14 202-215 181-194 (334)
20 PRK06958 single-stranded DNA-b 80.8 2.4 5.2E-05 46.7 5.1 6 23-28 110-115 (182)
21 KOG3074 Transcriptional regula 79.2 0.55 1.2E-05 52.7 -0.3 15 72-86 26-40 (263)
22 PF04285 DUF444: Protein of un 77.6 3.8 8.2E-05 50.4 6.0 40 159-212 160-199 (421)
23 PF13865 FoP_duplication: C-te 76.1 7.5 0.00016 36.9 6.3 27 73-99 37-67 (74)
24 COG4371 Predicted membrane pro 75.9 3.2 6.9E-05 47.3 4.3 14 119-132 182-195 (334)
25 KOG1596 Fibrillarin and relate 73.8 5.7 0.00012 45.5 5.6 14 484-497 288-301 (317)
26 cd07354 HN_L-delphilin-R1_like 71.3 14 0.0003 35.8 6.7 68 163-231 3-72 (80)
27 KOG1308 Hsp70-interacting prot 69.0 13 0.00029 44.5 7.4 35 95-130 336-376 (377)
28 COG4174 ABC-type uncharacteriz 64.9 15 0.00033 42.6 6.7 29 83-111 83-111 (364)
29 cd07354 HN_L-delphilin-R1_like 63.0 25 0.00054 34.1 6.6 68 79-147 3-72 (80)
30 PF05642 Sporozoite_P67: Sporo 62.1 11 0.00024 47.3 5.3 11 403-413 371-381 (727)
31 KOG3074 Transcriptional regula 60.8 5.4 0.00012 45.1 2.2 9 185-193 72-80 (263)
32 smart00157 PRP Major prion pro 60.6 22 0.00047 39.4 6.5 18 95-112 120-137 (217)
33 PTZ00009 heat shock 70 kDa pro 57.4 9 0.0002 49.7 3.7 7 58-64 631-637 (653)
34 PF05642 Sporozoite_P67: Sporo 56.9 16 0.00034 46.1 5.3 6 375-380 364-369 (727)
35 PF04285 DUF444: Protein of un 54.7 19 0.0004 44.6 5.5 8 12-19 50-57 (421)
36 PRK10930 FtsH protease regulat 54.0 13 0.00029 45.9 4.1 16 382-397 302-317 (419)
37 PF11867 DUF3387: Domain of un 52.9 1.2E+02 0.0026 36.4 11.8 99 114-212 117-229 (335)
38 PF05387 Chorion_3: Chorion fa 52.6 15 0.00033 41.8 4.0 16 79-94 71-86 (277)
39 PF07466 DUF1517: Protein of u 52.4 24 0.00052 41.7 5.8 18 200-217 139-156 (289)
40 KOG1924 RhoA GTPase effector D 51.1 33 0.00071 44.9 6.8 18 680-697 969-986 (1102)
41 PRK05325 hypothetical protein; 51.0 16 0.00034 45.0 4.0 18 160-177 145-162 (401)
42 PRK04537 ATP-dependent RNA hel 50.2 27 0.00059 44.8 6.2 10 371-380 556-565 (572)
43 PF07655 Secretin_N_2: Secreti 48.9 20 0.00043 35.7 3.8 30 64-93 51-80 (98)
44 KOG3570 MAPK-activating protei 47.2 17 0.00038 47.5 3.7 37 640-676 903-940 (1588)
45 KOG3262 H/ACA small nucleolar 42.6 42 0.0009 37.2 5.2 17 214-230 128-144 (215)
46 TIGR02877 spore_yhbH sporulati 39.3 31 0.00067 42.0 4.0 31 387-427 317-347 (371)
47 PF04094 DUF390: Protein of un 39.1 48 0.001 43.2 5.7 9 129-137 196-204 (828)
48 PRK05325 hypothetical protein; 38.6 29 0.00063 42.8 3.7 10 387-396 338-347 (401)
49 PF12174 RST: RCD1-SRO-TAF4 (R 38.1 78 0.0017 30.0 5.7 45 371-415 13-57 (70)
50 KOG1456 Heterogeneous nuclear 37.3 27 0.00059 42.1 3.1 18 132-149 47-64 (494)
51 KOG4462 WASP-interacting prote 36.2 41 0.00089 40.4 4.3 13 7-19 37-49 (437)
52 KOG1924 RhoA GTPase effector D 35.5 63 0.0014 42.5 5.9 17 371-390 806-822 (1102)
53 PF04228 Zn_peptidase: Putativ 35.2 45 0.00098 39.5 4.5 14 166-179 152-165 (292)
54 KOG1456 Heterogeneous nuclear 34.1 36 0.00077 41.2 3.4 28 400-429 359-386 (494)
55 KOG0775 Transcription factor S 33.1 1.6E+02 0.0035 34.8 8.1 31 77-107 58-90 (304)
56 PF04094 DUF390: Protein of un 31.2 52 0.0011 42.9 4.3 6 142-147 165-170 (828)
57 KOG3875 Peroxisomal biogenesis 29.6 70 0.0015 38.1 4.7 10 203-212 180-189 (362)
58 KOG3304 Surfeit family protein 29.5 78 0.0017 33.4 4.5 33 79-111 15-48 (148)
59 TIGR02877 spore_yhbH sporulati 29.4 54 0.0012 40.1 3.9 16 161-176 158-173 (371)
60 PF08349 DUF1722: Protein of u 26.6 1.3E+02 0.0029 30.7 5.6 49 370-418 56-104 (117)
61 cd07347 harmonin_N_like N-term 25.6 2E+02 0.0044 28.0 6.2 60 370-430 6-67 (78)
62 PF08963 DUF1878: Protein of u 24.6 91 0.002 32.2 3.9 64 365-428 42-110 (113)
63 PF12083 DUF3560: Domain of un 24.6 1.7E+02 0.0037 30.8 6.0 65 591-655 41-118 (126)
64 KOG0037 Ca2+-binding protein, 24.5 75 0.0016 36.2 3.7 27 95-122 56-82 (221)
65 KOG0339 ATP-dependent RNA heli 24.1 94 0.002 39.4 4.6 10 84-93 659-668 (731)
66 PRK09807 hypothetical protein; 21.9 75 0.0016 32.5 2.7 49 89-137 3-63 (161)
67 KOG0037 Ca2+-binding protein, 21.9 93 0.002 35.5 3.7 19 102-120 56-74 (221)
68 PF07462 MSP1_C: Merozoite sur 21.5 1.7E+02 0.0037 37.4 6.1 6 186-191 417-422 (574)
69 PF12301 CD99L2: CD99 antigen 21.4 2.5E+02 0.0053 31.1 6.7 17 81-97 125-141 (169)
70 KOG0775 Transcription factor S 20.8 86 0.0019 36.8 3.2 15 129-143 77-91 (304)
71 COG5324 Uncharacterized conser 20.3 1.2E+02 0.0027 38.2 4.5 126 558-690 523-680 (758)
No 1
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=1.3e-147 Score=1305.92 Aligned_cols=926 Identities=29% Similarity=0.433 Sum_probs=675.9
Q ss_pred CCCCCCCCccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHhccChhhhhhhhccCCccccc
Q 000591 68 AGMGTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEI 147 (1402)
Q Consensus 68 ~g~~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkgHpdLI~GFN~FLP~gy~I 147 (1402)
+.....++|+|+||++||++||.+|..+|++|+.||+||+|||+|.|||+|||+||+.||+|+|+||+|||+|||+||+|
T Consensus 118 p~~~~~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYki 197 (1163)
T COG5602 118 PPRIPYRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKI 197 (1163)
T ss_pred CCCCCCCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEE
Confidence 45667789999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCC--------------------------------------------CC-------------CCCcccHHHHHHHHH
Q 000591 148 TLDEDE--------------------------------------------AP-------------PKKTVEFEEAITFVN 170 (1402)
Q Consensus 148 ~l~~de--------------------------------------------~P-------------p~~~vef~~Ai~FVn 170 (1402)
+++.+. || ++..+.|++||.|||
T Consensus 198 e~S~~~~~~s~l~vtTP~gp~s~~pv~ss~y~a~~n~~qrts~p~lps~~Q~e~s~~~~~~sd~~~~~~~d~nqAI~~vn 277 (1163)
T COG5602 198 EGSLPQPNGSRLHVTTPQGPLSSPPVQSSYYVAPCNHDQRTSHPTLPSDSQPEPSAPSHMPSDARGKHQVDFNQAIIFVN 277 (1163)
T ss_pred EEecCCCCCCeeeecCCCCCCCCCCcccccccccccccccccCCCCccccCCCCCCcccCCcccccccceehhHHHHHHH
Confidence 875210 00 023467999999999
Q ss_pred HHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCc--CCCCccccCCcccCC
Q 000591 171 KIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSL--SHNIPFVRNSTQRGN 248 (1402)
Q Consensus 171 KVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~~hpDLL~eF~~FLP~~~~~~~--~~~~~~~~~~~~~~~ 248 (1402)
+||.||+++|+.|..||++|+.||..+++|++||++|+.||+++|||+++|..|||+...... +.+++.+
T Consensus 278 kVK~r~~~~pe~y~~fl~~Lrtyq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~~~~a~q~~a~aq~p-------- 349 (1163)
T COG5602 278 KVKVRFQNNPEMYYDFLDSLRTYQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDSSVSAEQSTANAQKP-------- 349 (1163)
T ss_pred HHHHhcCCCchhHHHHHHHHHHHHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccccccccccccccCCC--------
Confidence 999999999999999999999999999999999999999999999999999999999865432 1111110
Q ss_pred CCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCCCccccccccCcc
Q 000591 249 ERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQDDREIEHDNNRD 328 (1402)
Q Consensus 249 ~r~~~~P~~~q~~~~K~~~~~r~~~s~~~~~~sv~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~~~~~~~~~~~~~ 328 (1402)
+..+|+...+...+.- +.++.+++.. ..|.. . .+..+-| . +-..+
T Consensus 350 --~~~lPPiG~Fs~p~~a-~~~~~ps~~~-----~~p~~-----~-----------~~~~~~r-~----------d~~~S 394 (1163)
T COG5602 350 --SKRLPPIGSFSLPTAA-PEQNRPSLLW-----ESPRS-----I-----------SNISRYR-A----------DLLTS 394 (1163)
T ss_pred --cccCCCCCCCCCCCcc-cccCChHHhh-----cCcch-----h-----------ccccccc-c----------chhhh
Confidence 1223333222111100 0000000000 00000 0 0000000 0 00000
Q ss_pred cccccCCCCccccccccCCCCCCCCCcccchhhhhhhhhhhhhHHHHHHhhcC-hHHHHHHHHHHHhhhcCCCCHHHHHH
Q 000591 329 FNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC-SDDYQAFLKCLHIYSNGIIKRNDLQN 407 (1402)
Q Consensus 329 ~~~~~~~~k~~~~~~~~~~~~~P~~s~~d~~~a~k~~~~eEl~FFdKVKk~L~-~~~Y~eFLKcLnLYsQeIIsr~ELv~ 407 (1402)
+..+-.|.+. . .|... ..++.-.||++||.+|. ...|++||||||||+|+||++++||+
T Consensus 395 ~s~~~~P~~~---------~-~P~s~----------~~~~se~ffe~ikq~L~~~~~y~eFLKlLnLY~Q~iiDk~~Lve 454 (1163)
T COG5602 395 FSRNFVPIRI---------H-MPISH----------LSNESEDFFERIKQYLKDKNLYHEFLKLLNLYSQKIIDKNDLVE 454 (1163)
T ss_pred hhhhcCCccc---------c-CCccc----------cCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhccHHHHHH
Confidence 1111011100 0 11110 01122279999999999 99999999999999999999999999
Q ss_pred HHHHHhccChHHHHHHhhhhccccccccccccccccccccCCCCcccccccccchhhhhhhhhHhHhhhhhhhhhhhccc
Q 000591 408 LVTDLLGKYMDLMDEFNHFFERCENIDGFLAGVMSKKSLCNDGHVSRSVKIEDKDREHKREMEVTKEKDRYKEKYYAKSI 487 (1402)
Q Consensus 408 lV~~fLG~~pDLm~~Fk~FLg~~e~~d~~~~g~~s~~~l~~~g~~~~~~~~e~~~r~~~~~~d~~~eR~~~~~k~~~kp~ 487 (1402)
++-.|||.+.+||.|||+|++|.+... .|+ +.
T Consensus 455 r~~~~L~sNe~L~~wFk~fi~y~~~~~-------------------~~~-----------------------------~~ 486 (1163)
T COG5602 455 RLFAFLGSNEELIRWFKAFINYSEPEK-------------------EPL-----------------------------RE 486 (1163)
T ss_pred HHHHHhcCcHHHHHHHHHHhccCCCCC-------------------CCc-----------------------------cc
Confidence 999999999999999999999975210 000 00
Q ss_pred cccccCCCcccCcccccCCCCCCCCCCCCccccccccccCeeeec-ccCCCCcccchhccchhhHHHhhccccchhHHHH
Q 000591 488 QELDLSNCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSV-TSGSEDYSFKHMRRNQYEESLFRCEDDRFELDML 566 (1402)
Q Consensus 488 ~elDls~c~r~gpSYR~LPk~~~~~~cSgR~eLc~~VLND~WVS~-t~~SED~~F~~~rKNqyEE~LfrcEDERfElDm~ 566 (1402)
...||+.|+.||||||+||+++...+|||||+|||+||||.|||| ||+|||++|++||||||||+|||+||||||||.+
T Consensus 487 ~~~~le~~~~~GpSYR~LP~~e~~i~CSGRDDl~w~VLND~wVs~Pt~aSEdSgfI~hrkNqyEEaL~kiEeERyEyDr~ 566 (1163)
T COG5602 487 TRKDLEKFEKCGPSYRLLPKSEEEIKCSGRDDLAWEVLNDDWVSHPTWASEDSGFIAHRKNQYEEALFKIEEERYEYDRH 566 (1163)
T ss_pred cccCHhHhhhhCcchhcCCchhhhCCccCcchhhHhhhccccccCCCcccccccceeecccHHHHHHHHHHHHHHHHHHH
Confidence 246889999999999999999999999999999999999999999 6999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcccccCCCccccccc----hhHHHHHHHHhhC-CCHHHHHHHHHhCcCcchhHHHHHHHH
Q 000591 567 LESVSSTAKRAEELLNSINENKITLETPFHLKDHF----SALNLRCIERLYG-DHGLDVMDILRKNPAIALPVMLTRLKQ 641 (1402)
Q Consensus 567 IE~~~~tI~~Le~l~~ki~~~~~~~~~~~~l~~~L----~~i~~R~I~rIYG-d~g~evie~L~knP~~AlPVVL~RLKQ 641 (1402)
||++.+||+.|+.++++|..|...++..+.|.++| .+||+++|++||| +||.+||++|+++|++|+||||+|||+
T Consensus 567 Iea~~~~Ik~Le~i~d~~~~~~e~Eka~~~Lp~glg~~S~sIyKkvik~VY~KEhA~eile~L~k~P~vt~PiVlkRLk~ 646 (1163)
T COG5602 567 IEATQRTIKALEQIIDKIKDMEESEKANKTLPGGLGLPSKSIYKKVIKKVYDKEHAPEILEALLKKPHVTIPIVLKRLKM 646 (1163)
T ss_pred HHHHHHHHHHHHHHHHHhhcchhhHHHHhcCCCcCCCccHHHHHHHHHHHhchhhHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 99999999999999999999998888888888766 5899999999999 799999999999999999999999999
Q ss_pred HHHHHHHHHHHhhHHHHHHHHHhhhhhccccccchhhhhhcccchhHHHHHHHHHHHhhhccchhHHHHhhCCCCCCCCC
Q 000591 642 KQEEWTKCRSDFNKVWAEIYAKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKQFKENKQTEDDVLFVIAAGHRQPVIPH 721 (1402)
Q Consensus 642 K~eEWr~aq~e~nKvWrev~~KNy~KSLDHq~~~FKq~DkK~lssK~Lv~EIe~i~eeq~~edd~l~~~~~g~~~~~~P~ 721 (1402)
|++|||+|||+|||+||+|.+|||+|||||||++||+.|||.|++|.||.||+.++.++-.- . + +....-+
T Consensus 647 Kd~EWR~~kRew~kiWReIEeKN~~ksLD~~g~sfK~rDKk~lstk~il~eidd~~q~kih~--~-~------~~k~~fq 717 (1163)
T COG5602 647 KDEEWRSCKREWNKIWREIEEKNYHKSLDHQGVSFKSRDKKILSTKNILEEIDDRSQAKIHV--S-I------DDKKVFQ 717 (1163)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhHHhhhhhcccceeccccccchHHHHHHHhhHhhhcceee--e-c------Cccccce
Confidence 99999999999999999999999999999999999999999999999999999766543211 0 0 1112348
Q ss_pred ceeecCChhHHHHHHHHHHHhhhccc-CCHHHHHHHHHHHHHhhhccCCCCCCCCCCcchhhhcccccCCCCCCCCcccc
Q 000591 722 LEYGYSDSNIHEDLYKLVQYSCEEMC-STKDQLNKAMKLWTTFLEPMLSVPSRPSDVEGAEDAGKARHSGKNNSASSMVE 800 (1402)
Q Consensus 722 l~f~y~D~~I~~D~~~Li~~~~~~~~-~s~e~~~ki~~~~~~Fl~~fF~i~~r~~~~~~~ed~~~~~~~~~~~~~~~~~~ 800 (1402)
+.|.|+|.-|+.|++.|..-..-.++ -+..+++++..+++.||..||++-.-- .+..+-.... . |..
T Consensus 718 f~fvlcd~~If~nil~l~dt~itn~ssyl~~dkerlka~lk~~~slff~~~~~~-----i~~~~y~~~~-----n--v~~ 785 (1163)
T COG5602 718 FVFVLCDTYIFVNILDLKDTLITNMSSYLESDKERLKANLKTIVSLFFLLCIFR-----IIIIVYERLL-----N--VKG 785 (1163)
T ss_pred eeeecccceeEeeeccccceeeecchhhhhhhHHHHHHHHHHHHHHHhhhhhhh-----hhhhhhhhhc-----c--ccc
Confidence 89999999999999998764433332 245789999999999999999854210 1111100000 0 000
Q ss_pred cCCCCCCCCCccCCCCCCCCCCCCCCcccccccccccccCCCccccccccccccccccccchhhhhhhhhhccccccccc
Q 000591 801 SDGSPGPDGTVNSRQPISSGNGDENTSTELNNLCRTALSNGDTITKENVLDSDRVYRDDLSCSALQLEKEQKNVDISDKR 880 (1402)
Q Consensus 801 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 880 (1402)
. |.+.. . .+|..++.. .+|.
T Consensus 786 ~-------------------ni~g~-----------------k--------~~r~srs~~---~~q~------------- 805 (1163)
T COG5602 786 L-------------------NIDGL-----------------K--------ADRSSRSDE---SAQR------------- 805 (1163)
T ss_pred c-------------------ccCCc-----------------c--------cccccccch---hhhh-------------
Confidence 0 00000 0 000000000 0000
Q ss_pred cchhhhhhccccccCCCCCCccccccCCCCCCcccccCCCCCCCccccccccccCCCCCCCCcccccCCCCCcccccccc
Q 000591 881 SGIIIQVAVGERVANSDASPAIGAENSHGRTGSEMMSASLRPCDAAKDDLKHEANVNPVPPSEVTQGCDLAKPTLLENGA 960 (1402)
Q Consensus 881 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~ 960 (1402)
. ..++ + .+++. +
T Consensus 806 -------~---s~vk---------------------------------------s--gn~~q--v--------------- 817 (1163)
T COG5602 806 -------Y---SKVK---------------------------------------S--GNLEQ--V--------------- 817 (1163)
T ss_pred -------H---HHhh---------------------------------------c--ccchh--c---------------
Confidence 0 0000 0 00000 0
Q ss_pred cccCcccccccccCCCCCcccccccccCCCCCcccccccccccccccccccccCCccchhccccccccccccccCCCCCC
Q 000591 961 LRDGAKGINYHEKSVGPTKIEKEEGELSPNGDFEEDNFGVYGDAAVKTLPKAKHGVESRQYQSKNEKGLQHQVVGGENDA 1040 (1402)
Q Consensus 961 ~~~~~~~~~~~~~~~~~~k~e~eegelsp~~d~e~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~e~~~ 1040 (1402)
+ +- +++++ +|
T Consensus 818 -----s------------~q--~de~a-----ie---------------------------------------------- 827 (1163)
T COG5602 818 -----S------------KQ--IDEYA-----IE---------------------------------------------- 827 (1163)
T ss_pred -----c------------cC--CchhH-----HH----------------------------------------------
Confidence 0 00 00000 00
Q ss_pred CCCccccCCccccCCCCCCCCCCCCccchhhhhhhhcccccccCCcccccCcccCCccccccCCCCCCCCcchhhhcccC
Q 000591 1041 DADDEDSGNASVAGDDASGSESAGDEYSREEHEEEEDVERDDVDGKAESEGEADGMADQHFVGGDCMSLPMSERFLLSVK 1120 (1402)
Q Consensus 1041 ~~d~e~s~~~s~~g~~~s~ses~~~~~~~~~~~~e~~~~~~~~d~k~es~gea~g~~~~~~~~~~~~~~~~s~~~~~~~k 1120 (1402)
|| .. +.+. | .|..+.+.-.|.+..
T Consensus 828 ---de-------~k---~p~h-----p--------------------------d~l~eh~~skgi~en------------ 851 (1163)
T COG5602 828 ---DE-------IK---EPTH-----P--------------------------DGLKEHNISKGISEN------------ 851 (1163)
T ss_pred ---HH-------hc---CCCC-----C--------------------------chHHHhhhhhccchh------------
Confidence 00 00 0000 0 000000000010000
Q ss_pred cccccCCCcccccccccceeeecChhHhHHHHHHHHHHHHHHHHHhCchhhhhccccccCCChhHHHHHHHHHHhhccCC
Q 000591 1121 PLAKFVPATSVEERKDCRVFYGNDDFYVLFRLHQTLYERIQWAKMNTTGAEMKRRTSKEASCSDLYARFMTALYNLLDGS 1200 (1402)
Q Consensus 1121 pla~~~~~~~~~~~~~~~lFygN~~~Yvf~RLhqiLyERL~~aK~~~~~~~~k~k~~~d~~~~d~Y~~fL~~l~~LldG~ 1200 (1402)
.++ ...+ .||||.+.||||||.-.+||||..+|..-.+..+ ......-|...+.++++|+.|.
T Consensus 852 --ek~--------~i~~-~~fgns~myvffrl~~~~yerLyeik~~~e~vti------~~~~~g~Yen~l~~s~rli~g~ 914 (1163)
T COG5602 852 --EKQ--------VIAL-TEFGNSLMYVFFRLRFDSYERLYEIKKIKEAVTI------GMMEPGHYENELWDSYRLIFGA 914 (1163)
T ss_pred --hHH--------HHHH-hhcccceeeeehhhhHhHHHHHHHHHHHHHHhhh------hhcccchhhhHHHHHHHHHhcc
Confidence 011 1123 3999999999999999999999999854433321 1223458999999999999999
Q ss_pred CCchhhHHHHHhhhCCCceeEeeHHHHHHHHHHHHHHHhhchhhHHHHHHHHHHhhcCCCC-cchHHHHHHHHHhc-CCC
Q 000591 1201 IDNAKFEDECRAIIGNQSYVLFTLDKLLYRLCKQLQTVAADEMDNKLIQLYEYEESRKPGK-QIDSVYYENARVLL-HEE 1278 (1402)
Q Consensus 1201 ~d~~~fED~~R~mfg~~aY~lFTiDKLI~~ivKQlq~ivsDe~~~~ll~Ly~~E~~R~~~~-~~d~~Y~~~A~~ll-~dE 1278 (1402)
+++.+||+.+|..+++++|++||||||.+.|+||+|++++|-+.-.++.||.....-.+.+ ..+++||..+|.|| +||
T Consensus 915 l~~~efekylr~fynntcykiytidrl~qsl~kq~h~i~~d~Ky~~~~~lfe~nsaaS~k~~~dq~~yrl~ves~l~p~e 994 (1163)
T COG5602 915 LTPCEFEKYLRPFYNNTCYKIYTIDRLRQSLKKQLHPITYDIKYIAKSELFEMNSAASSKRKQDQTKYRLEVESLLNPDE 994 (1163)
T ss_pred ccHHHHHHHHHHhccCcccccccHHHHHHHHHHHhcccccchHHHHHHHHHHhccccCcCccchhhHHHHHHHHhcCchh
Confidence 9999999999999999999999999999999999999999999999999995443322222 46788999999999 899
Q ss_pred CeEEEEecCCCCeeEEEEecCCCCCcccccccCChHHHHhhhhhhcccccCCCCC----CccccccccccccCchhHHH-
Q 000591 1279 NIYRIQLSSSPSRLSIQLMDNVIEKPEAFAVTMDPNFAAYLLNDFLSAFLGKKEP----HAVVLRRNKRRFEGLDELSA- 1353 (1402)
Q Consensus 1279 n~yrie~~~~~~~ltIqL~d~~~e~~e~~~~s~~~~~~~Yv~~~fl~~~~~~~~~----~~VFL~Rn~rk~~~~~~~~~- 1353 (1402)
+||||.|.+.-.++.||.|-..+=-.+.+.. ....|.+||+ .|--.+++++.. +.+||.||+.+-+.......
T Consensus 995 ~~Fr~~w~~~~k~~~Iq~~~~adLt~~~~~~-~~~~wkyYV~-sYai~h~TEgi~~~~~k~PFL~R~ie~~~~v~~l~s~ 1072 (1163)
T COG5602 995 ILFRFCWINKFKSFGIQIMKRADLTVDQSLD-TQRVWKYYVQ-SYAIQHLTEGISYKNYKCPFLCRNIEKERTVEQLVSR 1072 (1163)
T ss_pred heeeeeecchhheeeeeEeeccccccccccC-hHHHHHHHHH-hhccccccccCchhhccchHHHHHHHhhhhHHHHHhh
Confidence 9999999988899999999553211222222 2348999999 999988888643 68899999987652221100
Q ss_pred -HHhhccCceeecCceEEEeeCcceeehhhhhhhhhhhccccchhhhh
Q 000591 1354 -ACMAMEGVQLVNGLECRIACNSYKVYLYSLAICFKLYLASATLWLIQ 1400 (1402)
Q Consensus 1354 -~~~~~~~v~v~ngLEcki~~~s~Kv~y~~~~~~~~~~~~~~~~~~~~ 1400 (1402)
.....-.-+...||...+|..|+|+.| |.-.+--|..+.-||+.+
T Consensus 1073 ~q~~l~~~h~~~s~lq~f~~~dt~k~~~--~pnte~~yi~~s~l~~~~ 1118 (1163)
T COG5602 1073 LQTKLLRSHELVSGLQAFLCLDTFKLLY--LPNTEDSYIDASYLRLRD 1118 (1163)
T ss_pred hhHHHHHHHHHhccceeeeeeccceeee--ccCCccchhhhhhhhhhh
Confidence 001111124458999999999999999 999999999999999865
No 2
>smart00761 HDAC_interact Histone deacetylase (HDAC) interacting. This domain is found on transcriptional regulators. It forms interactions with histone deacetylases.
Probab=100.00 E-value=2.3e-43 Score=339.00 Aligned_cols=100 Identities=56% Similarity=0.862 Sum_probs=96.5
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccC-CCCcccchhccchhhHHHhhccccchhHHHHHHHHHH
Q 000591 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSG-SEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSS 572 (1402)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eLc~~VLND~WVS~t~~-SED~~F~~~rKNqyEE~LfrcEDERfElDm~IE~~~~ 572 (1402)
+|++||||||+|||+|+.++||||++||++||||+|||||+| |||++|++||||||||+|||||||||||||+||++.+
T Consensus 1 ~c~~~gpSYr~Lpk~~~~~~cSgR~~l~~~VLND~wvsvps~~SED~~F~~~rKNqyEE~Lfr~EDeR~E~D~~ie~~~~ 80 (102)
T smart00761 1 NCERCGPSYRLLPKSEKQPKCSGRDELCKEVLNDTWVSHPTWASEDSGFVAHRKNQYEEALFRCEDERFELDMVIESNSS 80 (102)
T ss_pred CCcccCcchhhCCcccCCCCCCCccHHHHHHhCCceEeecCCcccccchhhhhccHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 599999999999999999999999999999999999999876 9999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcccccCC
Q 000591 573 TAKRAEELLNSINENKITLET 593 (1402)
Q Consensus 573 tI~~Le~l~~ki~~~~~~~~~ 593 (1402)
||++||+|+++|+.|+++++.
T Consensus 81 ti~~le~l~~~~~~~~~~e~~ 101 (102)
T smart00761 81 TIKLLEEILNKIEDMSDEERA 101 (102)
T ss_pred HHHHHHHHHHHHhcCChhhcc
Confidence 999999999999999887653
No 3
>PF08295 Sin3_corepress: Sin3 family co-repressor; InterPro: IPR013194 This domain is found on transcriptional regulators. It forms interactions with histone deacetylases [].
Probab=100.00 E-value=1.7e-41 Score=327.93 Aligned_cols=100 Identities=60% Similarity=0.914 Sum_probs=97.2
Q ss_pred CCcccCcccccCCCCCCCCCCCCccccccccccCeeeecccCCCCcccchhccchhhHHHhhccccchhHHHHHHHHHHH
Q 000591 494 NCQRCTPSYRLLPDDYPIPSASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSST 573 (1402)
Q Consensus 494 ~c~r~gpSYR~LPk~~~~~~cSgR~eLc~~VLND~WVS~t~~SED~~F~~~rKNqyEE~LfrcEDERfElDm~IE~~~~t 573 (1402)
+|++||||||+||++|+.++||||++||++||||+|||||+||||++|++||||||||+|||||||||||||+||+|++|
T Consensus 1 ~c~~~gpSYr~LP~~~~~~~cSgR~~l~~~VLND~wvs~p~~sEd~~f~~~kKnqyEE~lf~~EDeR~E~D~~ie~~~~t 80 (101)
T PF08295_consen 1 NCERCGPSYRLLPKSYQNPPCSGRDELCWSVLNDTWVSVPSWSEDSSFKAMKKNQYEEALFRCEDERFELDMLIESNRST 80 (101)
T ss_pred CCCcCccchhhCCcccCCCCCCCCchhhhhhcCCEEEEeCCccccccccchhhhHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhcccccCC
Q 000591 574 AKRAEELLNSINENKITLET 593 (1402)
Q Consensus 574 I~~Le~l~~ki~~~~~~~~~ 593 (1402)
|+.|++|+++|..|+++++.
T Consensus 81 I~~Le~l~~~i~~~~~ee~~ 100 (101)
T PF08295_consen 81 IKLLEELQEKIQDMSPEERA 100 (101)
T ss_pred HHHHHHHHHHHhcCCHhHhc
Confidence 99999999999999887654
No 4
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=100.00 E-value=4.8e-39 Score=352.48 Aligned_cols=159 Identities=63% Similarity=1.042 Sum_probs=148.0
Q ss_pred CCccchhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHhccChhhhhhhhccCCccccccCCCCC
Q 000591 74 QKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLPKGYEITLDEDE 153 (1402)
Q Consensus 74 ~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkgHpdLI~GFN~FLP~gy~I~l~~de 153 (1402)
++++++||++||++||.+|+++|++|++||+||+|||+++||+++||+||++||+|||+||+|||+|||+||+|+++.+.
T Consensus 15 ~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~~ 94 (231)
T KOG4204|consen 15 PALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSEA 94 (231)
T ss_pred CCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCccc
Confidence 34999999999999999999999999999999999999999999999999999999999999999999999999987431
Q ss_pred -------------CCCCCc-----------ccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHH
Q 000591 154 -------------APPKKT-----------VEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVAS 209 (1402)
Q Consensus 154 -------------~Pp~~~-----------vef~~Ai~FVnKVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~ 209 (1402)
.+++.. +++.+|++|+||||+||++++++|++||+||+||+++++++.+||++|..
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~y~~~~ks~~e~~~eV~~ 174 (231)
T KOG4204|consen 95 KDEFTIYGATSYLPSPKVAFHEEILKLLEDVEFDRAISFVNKLKTRFQGDDHVYKSFLEILRMYQEGNKSVSEVYQEVEA 174 (231)
T ss_pred ccccccccccccCCCccccccchhhhhcccchHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence 123333 88999999999999999999999999999999999999999999999999
Q ss_pred hhccChhHHHHHhhhCCCCCCCC
Q 000591 210 LFEDHADLLEEFTRFLPDTSATS 232 (1402)
Q Consensus 210 LF~~hpDLL~eF~~FLP~~~~~~ 232 (1402)
||++|+||+.+|.+|||......
T Consensus 175 L~~~~~DL~~ef~~~lp~~~~~~ 197 (231)
T KOG4204|consen 175 LLQGHEDLLEEFSHFLPTDPATG 197 (231)
T ss_pred HHccCHHHHHHHHhhccCCcccc
Confidence 99999999999999999975544
No 5
>KOG4204 consensus Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.81 E-value=4.2e-19 Score=195.70 Aligned_cols=178 Identities=24% Similarity=0.436 Sum_probs=136.4
Q ss_pred CCcccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000591 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1402)
Q Consensus 157 ~~~vef~~Ai~FVnKVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1402)
.+.+++++|++||++||.+|+++|++|.+||+||++|+.+.++..+|+++|+.||+||||||.+|+.|||..........
T Consensus 14 ~~~~t~~DAlsYl~~VK~~f~d~p~kY~~FL~im~d~ka~~iD~~~vi~rv~eLfK~h~~Ll~gfN~fLP~~~~i~~~~~ 93 (231)
T KOG4204|consen 14 SPALTLDDALAYLKAVKEAFQDEPEKYDEFLEIMKDFKAQRIDTPGVIARVKELLKGHPDLLLGFNTFLPPGYKITLSSE 93 (231)
T ss_pred CCCCChHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHccCHHHHHHHHhhCcccceeccCcc
Confidence 34579999999999999999999999999999999999999999999999999999999999999999999877654111
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000591 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1402)
Q Consensus 237 ~~~~~~~~~~~~~r~~~~P~~~q~~~~K~~~~~r~~~s~~~~~~sv~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1402)
+... ..++... ...|... . .
T Consensus 94 ~~~~-----------~~~~~~~-----------------------~~~~~~~------------------~-----~--- 113 (231)
T KOG4204|consen 94 AKDE-----------FTIYGAT-----------------------SYLPSPK------------------V-----A--- 113 (231)
T ss_pred cccc-----------ccccccc-----------------------ccCCCcc------------------c-----c---
Confidence 1000 0000000 0000000 0 0
Q ss_pred CccccccccCcccccccCCCCccccccccCCCCCCCCCcccchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000591 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1402)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~P~~s~~d~~~a~k~~~~eEl~FFdKVKk~L~--~~~Y~eFLKcLnL 394 (1402)
++ .... ..++. ..+.++..|..|||+++. .++|+.||.+|++
T Consensus 114 -----------------~~--~~~~---~~~~~--------------~~~~~a~~fv~klk~rf~~~~~v~~s~l~il~~ 157 (231)
T KOG4204|consen 114 -----------------FH--EEIL---KLLED--------------VEFDRAISFVNKLKTRFQGDDHVYKSFLEILRM 157 (231)
T ss_pred -----------------cc--chhh---hhccc--------------chHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 00 0000 00000 135678899999999998 6799999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000591 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1402)
Q Consensus 395 YsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FLg~~ 430 (1402)
|.++-.+..|+.+.|..+++.|+||+.+|..||.-.
T Consensus 158 y~~~~ks~~e~~~eV~~L~~~~~DL~~ef~~~lp~~ 193 (231)
T KOG4204|consen 158 YQEGNKSVSEVYQEVEALLQGHEDLLEEFSHFLPTD 193 (231)
T ss_pred HhhccchHHHHHHHHHHHHccCHHHHHHHHhhccCC
Confidence 999999999999999999999999999999999654
No 6
>COG5602 SIN3 Histone deacetylase complex, SIN3 component [Chromatin structure and dynamics]
Probab=99.77 E-value=4.6e-18 Score=205.53 Aligned_cols=211 Identities=24% Similarity=0.406 Sum_probs=142.7
Q ss_pred CCcccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCCCCCCCCcCCC
Q 000591 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLPDTSATSLSHN 236 (1402)
Q Consensus 157 ~~~vef~~Ai~FVnKVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~~hpDLL~eF~~FLP~~~~~~~~~~ 236 (1402)
-++++..+|++||++||.+|..+|++|..||+||++|+.+-++..+|+++|+.||+|.|+|+++|+.|||.......+..
T Consensus 123 ~r~Ldv~DAlsyLe~vK~~f~~rp~iYn~FLdiMkdFKsqaiDtpgVI~RVS~LFrgYP~LIegFNtFLPsgYkie~S~~ 202 (1163)
T COG5602 123 YRPLDVSDALSYLEKVKEQFSNRPEIYNNFLDIMKDFKSQAIDTPGVIERVSVLFRGYPHLIEGFNTFLPSGYKIEGSLP 202 (1163)
T ss_pred CCCCChHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHcCChHHHHHHhhhCCCccEEEEecC
Confidence 46788999999999999999999999999999999999999999999999999999999999999999999977654211
Q ss_pred CccccCCcccCCCCCCCCCCccccchhhhhccccccccCCCCCCCCCCCCcchHHHHHHHHHHHHHHHhhhhhcccCCCC
Q 000591 237 IPFVRNSTQRGNERSAGIPPLRQMQMDKHRRRDRIATSHADRDLSVDRPEMDDEKLMIKMQKEQRRRAEKENRDRRNRDQ 316 (1402)
Q Consensus 237 ~~~~~~~~~~~~~r~~~~P~~~q~~~~K~~~~~r~~~s~~~~~~sv~rP~~~~~~~~~~~~keqr~~~~k~~~~r~~~~~ 316 (1402)
.+ .+ .+...+.+..|.+.+. +.. ..+.+...++....+|.++.
T Consensus 203 ~~--~~--s~l~vtTP~gp~s~~p-v~s-----s~y~a~~n~~qrts~p~lps--------------------------- 245 (1163)
T COG5602 203 QP--NG--SRLHVTTPQGPLSSPP-VQS-----SYYVAPCNHDQRTSHPTLPS--------------------------- 245 (1163)
T ss_pred CC--CC--CeeeecCCCCCCCCCC-ccc-----ccccccccccccccCCCCcc---------------------------
Confidence 10 00 1111111111111110 000 00000000000011111000
Q ss_pred CccccccccCcccccccCCCCccccccccCCCCCCCCCcccchhhhhhhhhhhhhHHHHHHhhcC--hHHHHHHHHHHHh
Q 000591 317 DDREIEHDNNRDFNLQRFPDKKKSIKKVEGFGANSSLASYDDKDALKSIYNQGFIFCDKVKEKLC--SDDYQAFLKCLHI 394 (1402)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~~~~P~~s~~d~~~a~k~~~~eEl~FFdKVKk~L~--~~~Y~eFLKcLnL 394 (1402)
+ .|+-+ .+....|+ +...-....+.+.++|..|||.++. ++.|.+||.+|.-
T Consensus 246 -----------~--~Q~e~---------s~~~~~~s----d~~~~~~~d~nqAI~~vnkVK~r~~~~pe~y~~fl~~Lrt 299 (1163)
T COG5602 246 -----------D--SQPEP---------SAPSHMPS----DARGKHQVDFNQAIIFVNKVKVRFQNNPEMYYDFLDSLRT 299 (1163)
T ss_pred -----------c--cCCCC---------CCcccCCc----ccccccceehhHHHHHHHHHHHhcCCCchhHHHHHHHHHH
Confidence 0 00000 00000011 1001111247889999999999998 9999999999999
Q ss_pred hhcCCCCHHHHHHHHHHHhccChHHHHHHhhhhccc
Q 000591 395 YSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFFERC 430 (1402)
Q Consensus 395 YsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FLg~~ 430 (1402)
|..+.-+..|++..|+.++..+|||+++|+.||...
T Consensus 300 yq~~qr~i~ev~~~Vt~lfa~~PdLleeFk~FLPd~ 335 (1163)
T COG5602 300 YQMKQRSIQEVYARVTKLFAEAPDLLEEFKEFLPDS 335 (1163)
T ss_pred HHhhhccHHHHHHHHHHHHhhChHHHHHHHHhCccc
Confidence 999999999999999999999999999999999753
No 7
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.32 E-value=1.6e-12 Score=110.18 Aligned_cols=47 Identities=40% Similarity=0.795 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHHhccCChhHHHHHHHHHhccChhhhhhhhccCC
Q 000591 96 REKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKGHNNLIFGFNTFLP 142 (1402)
Q Consensus 96 p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkgHpdLI~GFN~FLP 142 (1402)
|++|++||+||++|+.++++..+|+++|+.||+||||||.+||.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 89999999999999999999999999999999999999999999998
No 8
>PF02671 PAH: Paired amphipathic helix repeat; InterPro: IPR003822 This family contains the paired amphipathic helix (PAH) repeat. The family contains the eukaryotic Sin3 proteins, which have at least three PAH domains (PAH1, PAH2, and PAH3). Sin3 proteins are components of a co-repressor complex that silences transcription, playing important roles in the transition between proliferation and differentiation. Sin3 proteins are recruited to the DNA by various DNA-binding transcription factors such as the Mad family of repressors, Mnt/Rox, PLZF, MeCP2, p53, REST/NRSF, MNFbeta, Sp1, TGIF and Ume6 []. Sin3 acts as a scaffold protein that in turn recruits histone-binding proteins RbAp46/RbAp48 and histone deacetylases HDAC1/HDAC2, which deacetylate the core histones resulting in a repressed state of the chromatin []. The PAH domains are protein-protein interaction domains through which Sin3 fulfils its role as a scaffold. The PAH2 domain of Sin3 can interact with a wide range of unrelated and structurally diverse transcription factors that bind using different interaction motifs. For example, the Sin3 PAH2 domain can interact with the unrelated Mad and HBP1 factors using alternative interaction motifs that involve binding in opposite helical orientations [].; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus; PDB: 1S5Q_B 2L9S_B 1G1E_B 1S5R_B 2CR7_A 2CZY_A 2LD7_B 2RMR_A 2RMS_A 1PD7_A ....
Probab=99.23 E-value=1.4e-11 Score=104.51 Aligned_cols=47 Identities=53% Similarity=0.863 Sum_probs=45.4
Q ss_pred hHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhccChhHHHHHhhhCC
Q 000591 180 EHVYKSFLEILNMYRKEHKDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1402)
Q Consensus 180 PevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~~hpDLL~eF~~FLP 226 (1402)
|++|++||+||++|+++.++..+|+++|+.||++||||+++|+.|||
T Consensus 1 p~~Y~~FL~il~~y~~~~~~~~~v~~~v~~Ll~~hpdLl~~F~~FlP 47 (47)
T PF02671_consen 1 PEVYNEFLKILNDYKKGRISRSEVIEEVSELLRGHPDLLEEFNRFLP 47 (47)
T ss_dssp HHHHHHHHHHHHHHHCTCSCHHHHHHHHHHHTTT-HHHHHHHHHHSS
T ss_pred ChHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHccCHHHHHHHHhhCc
Confidence 79999999999999999999999999999999999999999999998
No 9
>PTZ00146 fibrillarin; Provisional
Probab=95.15 E-value=0.031 Score=65.03 Aligned_cols=8 Identities=38% Similarity=0.538 Sum_probs=3.3
Q ss_pred cccccccc
Q 000591 485 KSIQELDL 492 (1402)
Q Consensus 485 kp~~elDl 492 (1402)
+++..++|
T Consensus 265 ~~~e~v~L 272 (293)
T PTZ00146 265 KPKEQLTL 272 (293)
T ss_pred ceEEEEec
Confidence 33444444
No 10
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=93.68 E-value=0.055 Score=64.81 Aligned_cols=11 Identities=27% Similarity=0.555 Sum_probs=8.8
Q ss_pred hHHHHHHHHHH
Q 000591 180 EHVYKSFLEIL 190 (1402)
Q Consensus 180 PevYk~FLeIL 190 (1402)
|++|.=||+-|
T Consensus 201 PQafdlFLKhl 211 (641)
T KOG3915|consen 201 PQAFDLFLKHL 211 (641)
T ss_pred HHHHHHHHHHH
Confidence 88888888864
No 11
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=93.44 E-value=0.081 Score=61.65 Aligned_cols=8 Identities=25% Similarity=0.451 Sum_probs=2.9
Q ss_pred CcccCCCC
Q 000591 17 PLTTAPPR 24 (1402)
Q Consensus 17 ~~~~~~~~ 24 (1402)
|+--+||.
T Consensus 309 ~nE~~ppp 316 (465)
T KOG3973|consen 309 TNEMVPPP 316 (465)
T ss_pred cccCCCCC
Confidence 33333333
No 12
>PLN03138 Protein TOC75; Provisional
Probab=92.36 E-value=0.13 Score=66.65 Aligned_cols=29 Identities=17% Similarity=0.181 Sum_probs=21.1
Q ss_pred hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHH
Q 000591 382 SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDL 412 (1402)
Q Consensus 382 ~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~f 412 (1402)
+++.+||+..+ +.++.+++++|..-+..|
T Consensus 282 ~~v~~e~f~~~--~~~gklN~e~Lq~die~I 310 (796)
T PLN03138 282 KSVRREVLGML--RDQGKVSARLLQRIRDRV 310 (796)
T ss_pred hHHHHHHHhhh--ccCCcCCHHHHHHHHHHH
Confidence 67788888777 566678988887765543
No 13
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=91.81 E-value=0.21 Score=58.36 Aligned_cols=6 Identities=33% Similarity=0.578 Sum_probs=2.4
Q ss_pred ccCCCC
Q 000591 19 TTAPPR 24 (1402)
Q Consensus 19 ~~~~~~ 24 (1402)
.-||-|
T Consensus 300 grvPDR 305 (465)
T KOG3973|consen 300 GRVPDR 305 (465)
T ss_pred ccCCCC
Confidence 333444
No 14
>PLN03138 Protein TOC75; Provisional
Probab=91.08 E-value=0.2 Score=65.05 Aligned_cols=15 Identities=13% Similarity=0.091 Sum_probs=8.4
Q ss_pred cCcHHHHHHHHHHhh
Q 000591 197 HKDINEVYSEVASLF 211 (1402)
Q Consensus 197 ~~si~eVy~qVa~LF 211 (1402)
-.+..+|.+.+..|+
T Consensus 181 v~trsqLq~dv~~I~ 195 (796)
T PLN03138 181 VYTKAQLQKELETLA 195 (796)
T ss_pred ccCHHHHHHHHHHHH
Confidence 344555666666655
No 15
>PHA00370 III attachment protein
Probab=90.22 E-value=1 Score=51.08 Aligned_cols=13 Identities=15% Similarity=0.054 Sum_probs=7.5
Q ss_pred hhhHHHHHHHHhc
Q 000591 81 ALTYLKEVKDMFQ 93 (1402)
Q Consensus 81 Al~YL~~VK~~F~ 93 (1402)
+..--+++|+.+-
T Consensus 148 ~~kma~a~kdalt 160 (297)
T PHA00370 148 YPKMANANKDALT 160 (297)
T ss_pred cHHHhhhhhhhhc
Confidence 4444566676664
No 16
>KOG3915 consensus Transcription regulator dachshund, contains SKI/SNO domain [Transcription]
Probab=89.03 E-value=0.33 Score=58.47 Aligned_cols=11 Identities=36% Similarity=0.688 Sum_probs=6.3
Q ss_pred hHHHHHHHHHH
Q 000591 382 SDDYQAFLKCL 392 (1402)
Q Consensus 382 ~~~Y~eFLKcL 392 (1402)
+++|+-|||.|
T Consensus 201 PQafdlFLKhl 211 (641)
T KOG3915|consen 201 PQAFDLFLKHL 211 (641)
T ss_pred HHHHHHHHHHH
Confidence 55566666554
No 17
>PHA00370 III attachment protein
Probab=87.69 E-value=0.6 Score=52.89 Aligned_cols=16 Identities=31% Similarity=0.351 Sum_probs=7.6
Q ss_pred cHHHHHHHHHHHHHHc
Q 000591 161 EFEEAITFVNKIKKRF 176 (1402)
Q Consensus 161 ef~~Ai~FVnKVK~RF 176 (1402)
+|...-..|+.||--|
T Consensus 257 e~~I~CdKId~~k~v~ 272 (297)
T PHA00370 257 EFIIGCDKINDFKGVF 272 (297)
T ss_pred hhhhcchhHHHHHHHH
Confidence 3333445555555443
No 18
>PF02084 Bindin: Bindin; InterPro: IPR000775 Bindin, the major protein component of the acrosome granule of sea urchin sperm, mediates species-specific adhesion of sperm to the egg surface during fertilisation [, ]. The protein coats the acrosomal process after externalisation by the acrosome reaction; it binds to sulphated, fucose-containing polysaccharides on the vitelline-layer receptor proteoglycans that cover the egg plasma membrane. Bindins from different genera show high levels of sequence similarity in both the mature bindin domain and in the probindin precursor region. The most highly conserved region is a 42-residue segment in the central portion of the mature bindin protein. This domain may be responsible for conserved functions of bindin, while the more highly divergent flanking regions may be responsible for its species-specific properties [].; GO: 0007342 fusion of sperm to egg plasma membrane
Probab=83.74 E-value=11 Score=42.59 Aligned_cols=8 Identities=38% Similarity=0.688 Sum_probs=3.8
Q ss_pred ccChhhhh
Q 000591 128 KGHNNLIF 135 (1402)
Q Consensus 128 kgHpdLI~ 135 (1402)
+.|-+|+.
T Consensus 138 RHHSNLLA 145 (238)
T PF02084_consen 138 RHHSNLLA 145 (238)
T ss_pred HHHHHHHh
Confidence 44555543
No 19
>COG4371 Predicted membrane protein [Function unknown]
Probab=82.07 E-value=1.7 Score=49.39 Aligned_cols=14 Identities=29% Similarity=0.287 Sum_probs=5.5
Q ss_pred HHHHHHHHhhccCh
Q 000591 202 EVYSEVASLFEDHA 215 (1402)
Q Consensus 202 eVy~qVa~LF~~hp 215 (1402)
.|.++.+-.+--||
T Consensus 181 ~vlQEA~LalLRHP 194 (334)
T COG4371 181 RVLQEAALALLRHP 194 (334)
T ss_pred HHHHHHHHHHHcCC
Confidence 34444433333333
No 20
>PRK06958 single-stranded DNA-binding protein; Provisional
Probab=80.79 E-value=2.4 Score=46.70 Aligned_cols=6 Identities=50% Similarity=0.396 Sum_probs=2.3
Q ss_pred CCCCCC
Q 000591 23 PRGESY 28 (1402)
Q Consensus 23 ~~~~~~ 28 (1402)
++....
T Consensus 110 sr~~~~ 115 (182)
T PRK06958 110 GRGGSG 115 (182)
T ss_pred CCccCc
Confidence 344333
No 21
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=79.18 E-value=0.55 Score=52.66 Aligned_cols=15 Identities=27% Similarity=0.412 Sum_probs=9.6
Q ss_pred CCCCccchhhhhHHH
Q 000591 72 TSQKLTTSDALTYLK 86 (1402)
Q Consensus 72 ~~~~l~~~dAl~YL~ 86 (1402)
.+..|.++.-.-||+
T Consensus 26 ask~l~iq~KrfYlD 40 (263)
T KOG3074|consen 26 ASKRLQIQHKRFYLD 40 (263)
T ss_pred hhhhhhhhhheEEEE
Confidence 355666776666765
No 22
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=77.59 E-value=3.8 Score=50.43 Aligned_cols=40 Identities=18% Similarity=0.326 Sum_probs=21.6
Q ss_pred cccHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhc
Q 000591 159 TVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE 212 (1402)
Q Consensus 159 ~vef~~Ai~FVnKVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~ 212 (1402)
+..++-..++.+.|+.|..-. +-....+.++-.+|..|..
T Consensus 160 ~s~l~~~RTlr~al~Rria~~--------------~~~~~~~~~~~~~~~~~~~ 199 (421)
T PF04285_consen 160 PSNLDKKRTLREALKRRIALG--------------RPRRRELRELEEELEELEA 199 (421)
T ss_pred HHHHHHHHHhhHHHHHHHHhc--------------CCccccHHHHHHHHHHHhc
Confidence 335566666666666654321 1123346666677776664
No 23
>PF13865 FoP_duplication: C-terminal duplication domain of Friend of PRMT1
Probab=76.09 E-value=7.5 Score=36.88 Aligned_cols=27 Identities=19% Similarity=0.430 Sum_probs=16.3
Q ss_pred CCCccchh---hh-hHHHHHHHHhcCChHHH
Q 000591 73 SQKLTTSD---AL-TYLKEVKDMFQDQREKY 99 (1402)
Q Consensus 73 ~~~l~~~d---Al-~YL~~VK~~F~d~p~vY 99 (1402)
.+++|.++ -| .|....+..+-.+-+-|
T Consensus 37 ~~~kT~EeLDaELD~Ym~~~~~~LD~~Ld~Y 67 (74)
T PF13865_consen 37 KPPKTAEELDAELDAYMSKTKSKLDAELDSY 67 (74)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666543 33 78877777765554444
No 24
>COG4371 Predicted membrane protein [Function unknown]
Probab=75.89 E-value=3.2 Score=47.30 Aligned_cols=14 Identities=14% Similarity=0.140 Sum_probs=6.5
Q ss_pred HHHHHHHHhccChh
Q 000591 119 VIARVKDLFKGHNN 132 (1402)
Q Consensus 119 Vi~rV~~LFkgHpd 132 (1402)
|+....-.+-.||+
T Consensus 182 vlQEA~LalLRHPE 195 (334)
T COG4371 182 VLQEAALALLRHPE 195 (334)
T ss_pred HHHHHHHHHHcCCc
Confidence 44444444444654
No 25
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=73.78 E-value=5.7 Score=45.53 Aligned_cols=14 Identities=21% Similarity=0.344 Sum_probs=7.6
Q ss_pred hccccccccCCCcc
Q 000591 484 AKSIQELDLSNCQR 497 (1402)
Q Consensus 484 ~kp~~elDls~c~r 497 (1402)
.+|...+-|.-|++
T Consensus 288 lkP~EqvtLEP~er 301 (317)
T KOG1596|consen 288 LKPKEQVTLEPFER 301 (317)
T ss_pred cCchheeccccccC
Confidence 35555566655554
No 26
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=71.27 E-value=14 Score=35.80 Aligned_cols=68 Identities=21% Similarity=0.400 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCcHHHHHHHHHHhhc--cChhHHHHHhhhCCCCCCC
Q 000591 163 EEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHKDINEVYSEVASLFE--DHADLLEEFTRFLPDTSAT 231 (1402)
Q Consensus 163 ~~Ai~FVnKVK~RF~~dPevYk~FLeIL~~y~~~~~si~eVy~qVa~LF~--~hpDLL~eF~~FLP~~~~~ 231 (1402)
+.|..|..||..-+.++|..=....++|++|..+ +.++.+...+..++. .|--|+++-..|+|.....
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~-k~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAAD-KNVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 4699999999999999999999999999999764 456677777777774 5778999999999987543
No 27
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=68.95 E-value=13 Score=44.55 Aligned_cols=35 Identities=17% Similarity=0.385 Sum_probs=22.8
Q ss_pred ChHHHHHHHHHHH------HHHhccCChhHHHHHHHHHhccC
Q 000591 95 QREKYDMFLEVMK------DFKAQRTDTAGVIARVKDLFKGH 130 (1402)
Q Consensus 95 ~p~vY~eFLeIMk------dfk~~~idt~gVi~rV~~LFkgH 130 (1402)
+|++--.|.++|+ .|.+.. -+..||..++.+|-|-
T Consensus 336 dp~v~aal~d~~~np~n~~kyq~n~-kv~~~i~kl~~kf~g~ 376 (377)
T KOG1308|consen 336 DPEVQAALMDVSQNPANMMKYQNNP-KVMDVISKLSQKFPGM 376 (377)
T ss_pred ChHHHhhhhhcccChHHHHHhccCh-HHHHHHHHHHhhcCCC
Confidence 4666666666643 444433 2468999999999874
No 28
>COG4174 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=64.92 E-value=15 Score=42.58 Aligned_cols=29 Identities=7% Similarity=0.310 Sum_probs=23.0
Q ss_pred hHHHHHHHHhcCChHHHHHHHHHHHHHHh
Q 000591 83 TYLKEVKDMFQDQREKYDMFLEVMKDFKA 111 (1402)
Q Consensus 83 ~YL~~VK~~F~d~p~vY~eFLeIMkdfk~ 111 (1402)
..+++++.+|.=+...-+.|+..|.+|-.
T Consensus 83 e~i~~i~~~~GFDKp~~eR~~~Ml~~y~r 111 (364)
T COG4174 83 ELIAEIEKQYGFDKPPLERYFLMLWDYAR 111 (364)
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHHHHHHh
Confidence 57899999999444455789999999974
No 29
>cd07354 HN_L-delphilin-R1_like First harmonin_N_like domain (repeat 1) of L-delphilin, and related domains. This subgroup contains the first of two harmonin_N_like domains of an alternatively spliced longer variant of mouse delphilin (L-delphilin, isoform 1), and related domains. Delphilin is a scaffold protein which binds the glutamate receptor delta-2 (GRID2) subunit and the monocarboxylate transporter 2 at the cerebellar parallel fiber-Purkinje cell synapses. The N-terminus of L-delphilin contains this harmonin_N_like domain preceded by a postsynaptic density-95/discs-large/ZO-1 (PDZ) protein-binding domain, PDZ1. L-delphilin, in common with the shorter C-terminal isoforms (S-delphilin/delphilin alpha and delphilin beta) has a second harmonin_N_like domain (not belonging to this subgroup) and a second PDZ domain, PDZ2. This first harmonin_N_like domain is a putative protein-binding module based on its sequence similarity to the harmonin N-domain.
Probab=62.96 E-value=25 Score=34.09 Aligned_cols=68 Identities=18% Similarity=0.360 Sum_probs=56.3
Q ss_pred hhhhhHHHHHHHHhcCChHHHHHHHHHHHHHHhccCChhHHHHHHHHHhcc--ChhhhhhhhccCCccccc
Q 000591 79 SDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTAGVIARVKDLFKG--HNNLIFGFNTFLPKGYEI 147 (1402)
Q Consensus 79 ~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~gVi~rV~~LFkg--HpdLI~GFN~FLP~gy~I 147 (1402)
+-|..|..+|..-+.++|.+=+...++|+.|-+.+ +++.++.-+.-++.. |-.||...-.|+|.-++.
T Consensus 3 ~kA~eF~~Kvd~iL~~dp~~Ke~l~~aLk~Ya~~k-~vd~l~~aL~~~L~~e~~~~Lld~IR~fIP~KHr~ 72 (80)
T cd07354 3 RKAQEFSRKVDAILGDDPVKKEQVFAALKQYAADK-NVDCLVWALCGLLQTEAHKKLLDEIRIFIPKKHRA 72 (80)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHc-CHHHHHHHHHHHhCcHHHHHHHHHhHhcCCchhHH
Confidence 45889999999999999999999999999998754 566777777666654 567999999999986653
No 30
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=62.14 E-value=11 Score=47.27 Aligned_cols=11 Identities=36% Similarity=0.748 Sum_probs=5.5
Q ss_pred HHHHHHHHHHh
Q 000591 403 NDLQNLVTDLL 413 (1402)
Q Consensus 403 ~ELv~lV~~fL 413 (1402)
+||-.||..||
T Consensus 371 ee~~~lv~tli 381 (727)
T PF05642_consen 371 EELKSLVNTLI 381 (727)
T ss_pred HHHHHHHHHHH
Confidence 34455555555
No 31
>KOG3074 consensus Transcriptional regulator of the PUR family, single-stranded-DNA-binding [Transcription]
Probab=60.82 E-value=5.4 Score=45.13 Aligned_cols=9 Identities=44% Similarity=0.800 Sum_probs=4.7
Q ss_pred HHHHHHHHH
Q 000591 185 SFLEILNMY 193 (1402)
Q Consensus 185 ~FLeIL~~y 193 (1402)
.|+++|+.|
T Consensus 72 ef~d~l~~f 80 (263)
T KOG3074|consen 72 EFRDILNDF 80 (263)
T ss_pred HHHHHHHHH
Confidence 455555544
No 32
>smart00157 PRP Major prion protein. The prion protein is a major component of scrapie-associated fibrils in Creutzfeldt-Jakob disease, kuru, Gerstmann-Straussler syndrome and bovine spongiform encephalopathy.
Probab=60.59 E-value=22 Score=39.36 Aligned_cols=18 Identities=17% Similarity=0.163 Sum_probs=8.1
Q ss_pred ChHHHHHHHHHHHHHHhc
Q 000591 95 QREKYDMFLEVMKDFKAQ 112 (1402)
Q Consensus 95 ~p~vY~eFLeIMkdfk~~ 112 (1402)
.|+-..-+-+-|..|-.+
T Consensus 120 np~EeryYne~myrYpnq 137 (217)
T smart00157 120 NDYEDRYYRENMYRYPNQ 137 (217)
T ss_pred ChHHHHHHHHHHHhCCCe
Confidence 344344444555555433
No 33
>PTZ00009 heat shock 70 kDa protein; Provisional
Probab=57.36 E-value=9 Score=49.73 Aligned_cols=7 Identities=57% Similarity=1.279 Sum_probs=2.5
Q ss_pred CCCCCCC
Q 000591 58 GVGGGGG 64 (1402)
Q Consensus 58 ~~~~~g~ 64 (1402)
|+.||||
T Consensus 631 ~~~~~~~ 637 (653)
T PTZ00009 631 GMPGGAG 637 (653)
T ss_pred CCCCCCC
Confidence 3333333
No 34
>PF05642 Sporozoite_P67: Sporozoite P67 surface antigen; InterPro: IPR008845 This family consists of several Theileria P67 surface antigens. A stage specific surface antigen of Theileria parva, p67, is the basis for the development of an anti-sporozoite vaccine for the control of East Coast fever (ECF) in Bos taurus. The antigen has been shown to contain five distinct linear peptide sequences recognised by sporozoite-neutralising murine monoclonal antibodies [].
Probab=56.89 E-value=16 Score=46.07 Aligned_cols=6 Identities=50% Similarity=0.562 Sum_probs=3.2
Q ss_pred HHHhhc
Q 000591 375 KVKEKL 380 (1402)
Q Consensus 375 KVKk~L 380 (1402)
++|++|
T Consensus 364 ~lk~fl 369 (727)
T PF05642_consen 364 KLKKFL 369 (727)
T ss_pred HHHHHH
Confidence 555554
No 35
>PF04285 DUF444: Protein of unknown function (DUF444); InterPro: IPR006698 This entry is represented by Thermus phage phiYS40, Orf56. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches [].
Probab=54.74 E-value=19 Score=44.62 Aligned_cols=8 Identities=13% Similarity=0.405 Sum_probs=3.3
Q ss_pred CcccCCcc
Q 000591 12 SQFKRPLT 19 (1402)
Q Consensus 12 ~~~~~~~~ 19 (1402)
-.++-|..
T Consensus 50 ~~V~IP~r 57 (421)
T PF04285_consen 50 EKVSIPIR 57 (421)
T ss_pred ceEeecCC
Confidence 33444443
No 36
>PRK10930 FtsH protease regulator HflK; Provisional
Probab=54.03 E-value=13 Score=45.93 Aligned_cols=16 Identities=25% Similarity=0.343 Sum_probs=11.0
Q ss_pred hHHHHHHHHHHHhhhc
Q 000591 382 SDDYQAFLKCLHIYSN 397 (1402)
Q Consensus 382 ~~~Y~eFLKcLnLYsQ 397 (1402)
+-.=..|.+++.-|.+
T Consensus 302 eGda~rF~~i~~~Y~k 317 (419)
T PRK10930 302 QGEVARFAKLLPEYKA 317 (419)
T ss_pred hhhHHHHHHHHHHHhh
Confidence 4455678888877765
No 37
>PF11867 DUF3387: Domain of unknown function (DUF3387); InterPro: IPR021810 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is typically between 255 to 340 amino acids in length. This domain is found associated with PF04851 from PFAM, PF04313 from PFAM.
Probab=52.87 E-value=1.2e+02 Score=36.43 Aligned_cols=99 Identities=23% Similarity=0.297 Sum_probs=60.7
Q ss_pred CChhHHHHHHHHHhccChh---hhhhhhccCCccccccCCCCC------CCCCCcccHHHHHHHHH-HHHHHcCCChHHH
Q 000591 114 TDTAGVIARVKDLFKGHNN---LIFGFNTFLPKGYEITLDEDE------APPKKTVEFEEAITFVN-KIKKRFHNDEHVY 183 (1402)
Q Consensus 114 idt~gVi~rV~~LFkgHpd---LI~GFN~FLP~gy~I~l~~de------~Pp~~~vef~~Ai~FVn-KVK~RF~~dPevY 183 (1402)
+|..++-.+|++|+..|=. .+.-|..+=|..-.|.+=.++ .-+.+....+.-..+++ +|+.++..+|..|
T Consensus 117 ~~~~~~~~~i~~Lid~~I~s~~v~~i~~~~~~~~~disild~eFl~~v~~~~~k~~~~e~L~~~l~~~I~~~~~~N~~~~ 196 (335)
T PF11867_consen 117 PDIKEVEEKIRQLIDESIASEGVVDIFEAAGLKKPDISILDDEFLEEVKKMKSKNLKAELLEKLLRDEIKVRMKENPVRY 196 (335)
T ss_pred CCHHHHHHHHHHHHHHHHhcccchhHHhhcCCCCCChhhcCHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence 5778888888888887631 222232221111111110000 01122223333344555 7999999999999
Q ss_pred HHHH----HHHHHHhhccCcHHHHHHHHHHhhc
Q 000591 184 KSFL----EILNMYRKEHKDINEVYSEVASLFE 212 (1402)
Q Consensus 184 k~FL----eIL~~y~~~~~si~eVy~qVa~LF~ 212 (1402)
++|- ++|..|+++.++..++++++..|-+
T Consensus 197 ~~fsErLe~iI~~Y~~~~i~~~e~~~eLi~la~ 229 (335)
T PF11867_consen 197 KKFSERLEEIIEKYNNRSISSEEVIEELIKLAK 229 (335)
T ss_pred HHHHHHHHHHHHHHHcccchHHHHHHHHHHHHH
Confidence 9888 4888999999999999999987744
No 38
>PF05387 Chorion_3: Chorion family 3; InterPro: IPR008449 This family consists Drosophila chorion proteins S36 and S38, which are involved in chorion membrane formation. The proteins consist of a central domain and two flanking 'arms'. The central domain contains tandemly repetitive peptides, which apparently generate a secondary structure of beta-sheet strands alternating with beta-turns, most probably, forming a twisted beta-pleated sheet or beta-barrel [].
Probab=52.60 E-value=15 Score=41.80 Aligned_cols=16 Identities=6% Similarity=0.167 Sum_probs=13.7
Q ss_pred hhhhhHHHHHHHHhcC
Q 000591 79 SDALTYLKEVKDMFQD 94 (1402)
Q Consensus 79 ~dAl~YL~~VK~~F~d 94 (1402)
-|+...|..|..+++.
T Consensus 71 peea~r~~~~Qaqygs 86 (277)
T PF05387_consen 71 PEEAGRAQRVQAQYGS 86 (277)
T ss_pred hhHhhhhccchhhhcc
Confidence 6788999999999884
No 39
>PF07466 DUF1517: Protein of unknown function (DUF1517); InterPro: IPR010903 This family consists of several hypothetical glycine rich plant and bacterial proteins of around 300 residues in length. The function of this family is unknown.
Probab=52.35 E-value=24 Score=41.67 Aligned_cols=18 Identities=17% Similarity=0.285 Sum_probs=11.1
Q ss_pred HHHHHHHHHHhhccChhH
Q 000591 200 INEVYSEVASLFEDHADL 217 (1402)
Q Consensus 200 i~eVy~qVa~LF~~hpDL 217 (1402)
+..|.++++-.|--|||.
T Consensus 139 l~~~L~E~~l~LLR~~~~ 156 (289)
T PF07466_consen 139 LARVLQETTLALLRHPEY 156 (289)
T ss_pred HHHHHHHHHHHHHhCcCc
Confidence 456666666666666654
No 40
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=51.12 E-value=33 Score=44.89 Aligned_cols=18 Identities=33% Similarity=0.661 Sum_probs=12.1
Q ss_pred hhcccchhHHHHHHHHHH
Q 000591 680 DSKNLSTKSLVAEIKQFK 697 (1402)
Q Consensus 680 DkK~lssK~Lv~EIe~i~ 697 (1402)
|-|-.+..-+++.|.+.+
T Consensus 969 d~kkysmEEFFaDi~tFr 986 (1102)
T KOG1924|consen 969 DPKKYSMEEFFADIRTFR 986 (1102)
T ss_pred CcccCcHHHHHHHHHHHH
Confidence 556677777777777653
No 41
>PRK05325 hypothetical protein; Provisional
Probab=50.99 E-value=16 Score=45.00 Aligned_cols=18 Identities=17% Similarity=0.364 Sum_probs=11.4
Q ss_pred ccHHHHHHHHHHHHHHcC
Q 000591 160 VEFEEAITFVNKIKKRFH 177 (1402)
Q Consensus 160 vef~~Ai~FVnKVK~RF~ 177 (1402)
...+--..+.+.+|.|.+
T Consensus 145 ~~l~~~RT~r~al~Rria 162 (401)
T PRK05325 145 SNLDKKRTLREALKRRIA 162 (401)
T ss_pred ccchHHHHHHHHHHHHhh
Confidence 345556667777777664
No 42
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=50.15 E-value=27 Score=44.78 Aligned_cols=10 Identities=10% Similarity=0.355 Sum_probs=4.9
Q ss_pred hHHHHHHhhc
Q 000591 371 IFCDKVKEKL 380 (1402)
Q Consensus 371 ~FFdKVKk~L 380 (1402)
+|.-++++++
T Consensus 556 ~~~~~~~~~~ 565 (572)
T PRK04537 556 SLLGRIGRRL 565 (572)
T ss_pred HHHHHHHHHH
Confidence 3445555544
No 43
>PF07655 Secretin_N_2: Secretin N-terminal domain; InterPro: IPR011514 This is a short domain found in bacterial type II/III secretory system proteins. The architecture of these proteins suggests that this family may be functionally analogous to IPR005644 from INTERPRO.; GO: 0009297 pilus assembly, 0019867 outer membrane
Probab=48.95 E-value=20 Score=35.65 Aligned_cols=30 Identities=13% Similarity=0.325 Sum_probs=21.4
Q ss_pred CCCCCCCCCCCCccchhhhhHHHHHHHHhc
Q 000591 64 GGMTAGMGTSQKLTTSDALTYLKEVKDMFQ 93 (1402)
Q Consensus 64 ~~~~~g~~~~~~l~~~dAl~YL~~VK~~F~ 93 (1402)
++.++......+++......|-+.|+..++
T Consensus 51 ~~~s~~~~s~~~i~t~s~~dfW~~L~~~l~ 80 (98)
T PF07655_consen 51 SGGSGSSSSGTSITTESKSDFWEDLQKTLQ 80 (98)
T ss_pred CCccccccCceEEEEEECCchHHHHHHHHH
Confidence 333445566778888888888888887654
No 44
>KOG3570 consensus MAPK-activating protein DENN [Signal transduction mechanisms]
Probab=47.21 E-value=17 Score=47.48 Aligned_cols=37 Identities=16% Similarity=0.031 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhHHHHHHHHH-hhhhhccccccch
Q 000591 640 KQKQEEWTKCRSDFNKVWAEIYAK-NHYKSLDHRSFYF 676 (1402)
Q Consensus 640 KQK~eEWr~aq~e~nKvWrev~~K-Ny~KSLDHq~~~F 676 (1402)
.+|+|+-++-|+.-|.-=.++.-| -.+..||-||+-+
T Consensus 903 ~~tqe~pt~Qqrs~~~seNQqflKev~~qvL~GqgVGw 940 (1588)
T KOG3570|consen 903 TVKREPPSPQGRSSNSSENQQFLKEVVHSVLDGQGVGW 940 (1588)
T ss_pred cccCCCCCccccccccchhhHHHHHHHHHHhcccccce
Confidence 345566655555433322222222 2345688888764
No 45
>KOG3262 consensus H/ACA small nucleolar RNP component GAR1 [Translation, ribosomal structure and biogenesis]
Probab=42.64 E-value=42 Score=37.22 Aligned_cols=17 Identities=35% Similarity=0.585 Sum_probs=12.1
Q ss_pred ChhHHHHHhhhCCCCCC
Q 000591 214 HADLLEEFTRFLPDTSA 230 (1402)
Q Consensus 214 hpDLL~eF~~FLP~~~~ 230 (1402)
.||-|.-..+|||....
T Consensus 128 ~p~KllPl~RFLP~p~~ 144 (215)
T KOG3262|consen 128 DPDKLLPLDRFLPQPVG 144 (215)
T ss_pred cccccCcHhhcCCCCCC
Confidence 46666677889998733
No 46
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=39.28 E-value=31 Score=42.03 Aligned_cols=31 Identities=19% Similarity=0.325 Sum_probs=17.1
Q ss_pred HHHHHHHhhhcCCCCHHHHHHHHHHHhccChHHHHHHhhhh
Q 000591 387 AFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMDLMDEFNHFF 427 (1402)
Q Consensus 387 eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~pDLm~~Fk~FL 427 (1402)
+.|.++|+|.=.-|... ..+..||..|+.-|
T Consensus 317 ~llp~~~~f~Y~Ei~~~----------~~~~~l~~~y~~~i 347 (371)
T TIGR02877 317 KLLEVCNLFGYGEIMPY----------GYSNTLKNKFKNEI 347 (371)
T ss_pred HHHHhhheEEEEEecCC----------CCcchHHHHHHhhh
Confidence 46777777755444320 23456776666534
No 47
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=39.07 E-value=48 Score=43.18 Aligned_cols=9 Identities=22% Similarity=0.061 Sum_probs=4.2
Q ss_pred cChhhhhhh
Q 000591 129 GHNNLIFGF 137 (1402)
Q Consensus 129 gHpdLI~GF 137 (1402)
.||-|..=|
T Consensus 196 ~~p~~~~~~ 204 (828)
T PF04094_consen 196 TSPFLFVFF 204 (828)
T ss_pred CCchHhhhc
Confidence 345544444
No 48
>PRK05325 hypothetical protein; Provisional
Probab=38.58 E-value=29 Score=42.75 Aligned_cols=10 Identities=10% Similarity=0.354 Sum_probs=4.7
Q ss_pred HHHHHHHhhh
Q 000591 387 AFLKCLHIYS 396 (1402)
Q Consensus 387 eFLKcLnLYs 396 (1402)
+.|..+|+|.
T Consensus 338 ~llp~~~~f~ 347 (401)
T PRK05325 338 ELLPVCNYFA 347 (401)
T ss_pred HHHHHhhheE
Confidence 3444555543
No 49
>PF12174 RST: RCD1-SRO-TAF4 (RST) plant domain; InterPro: IPR022003 This domain is found in many plant proteins including SROs and RCD1s; it is required for interaction with multiple plant transcription factors.
Probab=38.14 E-value=78 Score=30.03 Aligned_cols=45 Identities=11% Similarity=0.279 Sum_probs=38.8
Q ss_pred hHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhcc
Q 000591 371 IFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGK 415 (1402)
Q Consensus 371 ~FFdKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~ 415 (1402)
..|..+++.|.++..+...+..+-|-...|+|+||+..+..+.|+
T Consensus 13 ~L~~~l~~~l~~~~~~~l~~~Y~~~k~~kIsR~~fvr~lR~IVGD 57 (70)
T PF12174_consen 13 MLFSALSKHLPPSKMDLLQKHYEEFKKKKISREEFVRKLRQIVGD 57 (70)
T ss_pred HHHHHHHHHCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 367888899986667777788888899999999999999999994
No 50
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=37.29 E-value=27 Score=42.10 Aligned_cols=18 Identities=22% Similarity=0.473 Sum_probs=7.5
Q ss_pred hhhhhhhccCCccccccC
Q 000591 132 NLIFGFNTFLPKGYEITL 149 (1402)
Q Consensus 132 dLI~GFN~FLP~gy~I~l 149 (1402)
||+.+...|=|-.|-..+
T Consensus 47 dl~eal~~fG~i~yvt~~ 64 (494)
T KOG1456|consen 47 DLVEALSNFGPIAYVTCM 64 (494)
T ss_pred HHHHHHhcCCceEEEEec
Confidence 344444444444444333
No 51
>KOG4462 consensus WASP-interacting protein VRP1/WIP, contains WH2 domain [Cytoskeleton]
Probab=36.15 E-value=41 Score=40.44 Aligned_cols=13 Identities=31% Similarity=0.580 Sum_probs=8.4
Q ss_pred cccCCCcccCCcc
Q 000591 7 DVYGGSQFKRPLT 19 (1402)
Q Consensus 7 ~~~~~~~~~~~~~ 19 (1402)
|+.-|..||....
T Consensus 37 DI~KG~KLKK~~t 49 (437)
T KOG4462|consen 37 DIQKGKKLKKATT 49 (437)
T ss_pred Hhhhcceecceec
Confidence 4555777777664
No 52
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=35.45 E-value=63 Score=42.49 Aligned_cols=17 Identities=12% Similarity=0.655 Sum_probs=8.6
Q ss_pred hHHHHHHhhcChHHHHHHHH
Q 000591 371 IFCDKVKEKLCSDDYQAFLK 390 (1402)
Q Consensus 371 ~FFdKVKk~L~~~~Y~eFLK 390 (1402)
+-|+-||+. +.|..||+
T Consensus 806 ~ACEE~rkS---esFs~lLe 822 (1102)
T KOG1924|consen 806 AACEELRKS---ESFSKLLE 822 (1102)
T ss_pred HHHHHHHhh---hhHHHHHH
Confidence 345555553 44555553
No 53
>PF04228 Zn_peptidase: Putative neutral zinc metallopeptidase; InterPro: IPR007343 Members of this family of bacterial proteins are described as hypothetical proteins or zinc metallopeptidases. The majority have a HExxH zinc-binding motif characteristic of neutral zinc metallopeptidases, however there is no evidence to support their function as metallopeptidases.
Probab=35.22 E-value=45 Score=39.54 Aligned_cols=14 Identities=21% Similarity=0.740 Sum_probs=10.3
Q ss_pred HHHHHHHHHHcCCC
Q 000591 166 ITFVNKIKKRFHND 179 (1402)
Q Consensus 166 i~FVnKVK~RF~~d 179 (1402)
++|++.++.+|...
T Consensus 152 ~~f~~~L~~~~ga~ 165 (292)
T PF04228_consen 152 LSFFDELQQRFGAS 165 (292)
T ss_pred hHHHHHHHHHhCCc
Confidence 35888888888654
No 54
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=34.10 E-value=36 Score=41.19 Aligned_cols=28 Identities=14% Similarity=0.265 Sum_probs=12.7
Q ss_pred CCHHHHHHHHHHHhccChHHHHHHhhhhcc
Q 000591 400 IKRNDLQNLVTDLLGKYMDLMDEFNHFFER 429 (1402)
Q Consensus 400 Isr~ELv~lV~~fLG~~pDLm~~Fk~FLg~ 429 (1402)
+++++-+.-+.+|| -||=--.||+|-+.
T Consensus 359 ~SkQ~~v~~~~pfl--LpDgSpSfKdys~S 386 (494)
T KOG1456|consen 359 VSKQNFVSPVQPFL--LPDGSPSFKDYSGS 386 (494)
T ss_pred eccccccccCCcee--cCCCCcchhhcccc
Confidence 34555555555554 12223345555543
No 55
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=33.09 E-value=1.6e+02 Score=34.75 Aligned_cols=31 Identities=19% Similarity=0.107 Sum_probs=16.5
Q ss_pred cchhhhhHHHHHHHHhcC--ChHHHHHHHHHHH
Q 000591 77 TTSDALTYLKEVKDMFQD--QREKYDMFLEVMK 107 (1402)
Q Consensus 77 ~~~dAl~YL~~VK~~F~d--~p~vY~eFLeIMk 107 (1402)
++.-...-+..|=+.++. +-+..-.||--|-
T Consensus 58 t~~fS~eQvacvCe~L~q~Gd~erL~rFlwsLp 90 (304)
T KOG0775|consen 58 TFGFSEEQVACVCESLQQGGDIERLGRFLWSLP 90 (304)
T ss_pred CcCCCHHHHHHHHHHHHhccCHHHHHHHHHcCc
Confidence 343333445555566554 5666666765543
No 56
>PF04094 DUF390: Protein of unknown function (DUF390); InterPro: IPR007228 This domain is found in a family of long proteins that are currently found only in rice. They have no known function. However they may be some kind of transposable element. There is a putative gypsy type transposon domain (IPR007321 from INTERPRO) towards the N terminus of the proteins.
Probab=31.17 E-value=52 Score=42.86 Aligned_cols=6 Identities=17% Similarity=0.606 Sum_probs=2.4
Q ss_pred Cccccc
Q 000591 142 PKGYEI 147 (1402)
Q Consensus 142 P~gy~I 147 (1402)
||+..+
T Consensus 165 Ppkwtf 170 (828)
T PF04094_consen 165 PPKWTF 170 (828)
T ss_pred CCCCcc
Confidence 334443
No 57
>KOG3875 consensus Peroxisomal biogenesis protein peroxin [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.55 E-value=70 Score=38.13 Aligned_cols=10 Identities=10% Similarity=0.444 Sum_probs=4.6
Q ss_pred HHHHHHHhhc
Q 000591 203 VYSEVASLFE 212 (1402)
Q Consensus 203 Vy~qVa~LF~ 212 (1402)
+|..+...|+
T Consensus 180 lyR~~l~~L~ 189 (362)
T KOG3875|consen 180 LYRLLLKMLK 189 (362)
T ss_pred HHHHHHHHhC
Confidence 4444444444
No 58
>KOG3304 consensus Surfeit family protein 5 [General function prediction only]
Probab=29.55 E-value=78 Score=33.40 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=22.3
Q ss_pred hhhhhHHHHHHHHhcCC-hHHHHHHHHHHHHHHh
Q 000591 79 SDALTYLKEVKDMFQDQ-REKYDMFLEVMKDFKA 111 (1402)
Q Consensus 79 ~dAl~YL~~VK~~F~d~-p~vY~eFLeIMkdfk~ 111 (1402)
.-+-.-|+..+.|+.|+ ..+-+.|-+|++--|-
T Consensus 15 ask~al~k~~~~Rl~ddIkS~~dNF~~Ii~~Akv 48 (148)
T KOG3304|consen 15 ASKEALLKSYNKRLKDDIKSIMDNFTEIIKTAKV 48 (148)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHhc
Confidence 33445566666666654 5688899999887664
No 59
>TIGR02877 spore_yhbH sporulation protein YhbH. This protein family, typified by YhbH in Bacillus subtilis, is found in nearly every endospore-forming bacterium and in no other genome (but note that the trusted cutoff score is set high to exclude a single high-scoring sequence from Nitrosococcus oceani ATCC 19707, which is classified in the Gammaproteobacteria). The gene in Bacillus subtilis was shown to be in the regulon of the sporulation sigma factor, sigma-E, and its mutation was shown to create a sporulation defect.
Probab=29.43 E-value=54 Score=40.07 Aligned_cols=16 Identities=13% Similarity=0.347 Sum_probs=8.1
Q ss_pred cHHHHHHHHHHHHHHc
Q 000591 161 EFEEAITFVNKIKKRF 176 (1402)
Q Consensus 161 ef~~Ai~FVnKVK~RF 176 (1402)
..+--..+.+.+|.|.
T Consensus 158 ~l~~~RT~r~al~Rri 173 (371)
T TIGR02877 158 NLDKKRTVIEALKRNQ 173 (371)
T ss_pred cchHHHHHHHHHHHHh
Confidence 3444455555555553
No 60
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=26.56 E-value=1.3e+02 Score=30.73 Aligned_cols=49 Identities=29% Similarity=0.353 Sum_probs=42.8
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccChH
Q 000591 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKYMD 418 (1402)
Q Consensus 370 l~FFdKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~pD 418 (1402)
...|.-+|+.+..+.=++|+.+|..|.++.|+...++.+...++.++++
T Consensus 56 ~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g~i~l~~~l~~L~~~~~ry~~ 104 (117)
T PF08349_consen 56 QHIFGYFKKKLSSEEKQHFLDLIEDYREGKIPLSVPLTLLKHLARRYPD 104 (117)
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHHcCCccHHHHHHHHHHHHHHCCC
Confidence 4566778888887777899999999999999999999999999988873
No 61
>cd07347 harmonin_N_like N-terminal protein-binding module of harmonin and similar domains. This domain is found in harmonin, and similar proteins such as delphilin, and whirlin. These are postsynaptic density-95/discs-large/ZO-1 (PDZ) domain-containing scaffold proteins. Harmonin and whirlin are organizers of the Usher protein network of the inner ear and the retina, delphilin is found at the cerebellar parallel fiber-Purkinje cell synapses. This harmonin_N_like domain is found in either one or two copies. Harmonin contains a single copy, which is found at its N-terminus and binds specifically to a short internal peptide fragment of the cadherin 23 cytoplasmic domain; cadherin 23 is a component of the Usher protein network. Whirlin contains two copies of the harmonin_N_like domain; the first of these has been assayed for interaction with the cytoplasmic domain of cadherin 23 and no interaction could be detected.
Probab=25.57 E-value=2e+02 Score=28.01 Aligned_cols=60 Identities=15% Similarity=0.172 Sum_probs=48.6
Q ss_pred hhHHHHHHhhcChHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHhccC--hHHHHHHhhhhccc
Q 000591 370 FIFCDKVKEKLCSDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLLGKY--MDLMDEFNHFFERC 430 (1402)
Q Consensus 370 l~FFdKVKk~L~~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fLG~~--pDLm~~Fk~FLg~~ 430 (1402)
-.|.++|...|....-+.|..+|+.|.++- +-.+||.-+..+|... -.|+.+...++...
T Consensus 6 r~f~~q~~~LL~~~Er~~~~~~L~~Y~~~~-~Vd~LV~~L~~vLdtPaK~~Ll~~iR~lIp~~ 67 (78)
T cd07347 6 REFSQQVDHLLTDAEREQVTRALERYHQER-NVDDLVRDLYLVLDTPAKLPLLQFLRQVIPPK 67 (78)
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHcCcHhHHHHHHHHHHHcCHH
Confidence 358999999999444778999999999999 9999999999999642 25777777776543
No 62
>PF08963 DUF1878: Protein of unknown function (DUF1878); InterPro: IPR015058 This family consist of hypothetical bacterial proteins. ; PDB: 1SED_B.
Probab=24.65 E-value=91 Score=32.23 Aligned_cols=64 Identities=20% Similarity=0.424 Sum_probs=46.2
Q ss_pred hhhhhhhHHHHHHhhcC---hHHHHHHHHHHHhhhcCCCCHHHHHHHHHHHh--ccChHHHHHHhhhhc
Q 000591 365 IYNQGFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1402)
Q Consensus 365 ~~~eEl~FFdKVKk~L~---~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fL--G~~pDLm~~Fk~FLg 428 (1402)
...+-+..|+++.+.+. .+-|-.|-.+|..|...+..+=++-.-+..++ |-+++||.+|+.++.
T Consensus 42 evee~~~lce~l~ee~~~QKAeG~v~F~pLl~~F~~~L~~~L~~~eti~Al~~Qgl~~~lM~ef~~~i~ 110 (113)
T PF08963_consen 42 EVEEFLRLCEELSEELEEQKAEGFVIFDPLLAQFAGMLHEKLDVHETIEALLRQGLFQPLMTEFKKIIK 110 (113)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTT----HHHHHHHHHHS-TTS-HHHHHHHHHHTT-SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhhHHHHHHHHHhhcCccCCHHHHHHHHHHccCcHHHHHHHHHHHh
Confidence 34456789999999887 56688999999999887777767766677777 569999999999874
No 63
>PF12083 DUF3560: Domain of unknown function (DUF3560); InterPro: IPR021944 This presumed domain is functionally uncharacterised. This domain is found in bacteria. This domain is about 120 amino acids in length. This domain has a conserved GHHSE sequence motif.
Probab=24.58 E-value=1.7e+02 Score=30.83 Aligned_cols=65 Identities=20% Similarity=0.263 Sum_probs=49.5
Q ss_pred cCCCccccccchhHHHHHHHHhhC--CCHHHHHHHHH-----------hCcCcchhHHHHHHHHHHHHHHHHHHHhhH
Q 000591 591 LETPFHLKDHFSALNLRCIERLYG--DHGLDVMDILR-----------KNPAIALPVMLTRLKQKQEEWTKCRSDFNK 655 (1402)
Q Consensus 591 ~~~~~~l~~~L~~i~~R~I~rIYG--d~g~evie~L~-----------knP~~AlPVVL~RLKQK~eEWr~aq~e~nK 655 (1402)
+..||.++-|+..=|+|.|+|+-. +++.+..+.-. .--..-.|.+|.||+.+..+.+..|+.+..
T Consensus 41 ~GQPIlVGHHSE~R~Rr~~eR~~~~m~kav~~~~kA~y~~~rA~aa~~~~i~~~~Pda~~ri~~~la~~r~~q~~mk~ 118 (126)
T PF12083_consen 41 FGQPILVGHHSEKRHRRYRERIHNRMGKAVEAMDKAEYYEQRAAAAGRTAISSDDPDALRRIKKKLAELRASQRRMKA 118 (126)
T ss_pred CCCCeeccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhccChHHHHHHHHHHHHHHHHHHHHHH
Confidence 477898998999999999999988 45555443322 112334688899999999999999998754
No 64
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=24.53 E-value=75 Score=36.24 Aligned_cols=27 Identities=15% Similarity=0.099 Sum_probs=13.6
Q ss_pred ChHHHHHHHHHHHHHHhccCChhHHHHH
Q 000591 95 QREKYDMFLEVMKDFKAQRTDTAGVIAR 122 (1402)
Q Consensus 95 ~p~vY~eFLeIMkdfk~~~idt~gVi~r 122 (1402)
.|.++.-|-.+=+| .+++|...++..-
T Consensus 56 ~~~~~~~f~~vD~d-~sg~i~~~eLq~a 82 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRD-RSGRILAKELQQA 82 (221)
T ss_pred cHHHHHHHHhhCcc-ccccccHHHHHHH
Confidence 45666655544332 2345665555443
No 65
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=24.06 E-value=94 Score=39.43 Aligned_cols=10 Identities=20% Similarity=0.481 Sum_probs=5.4
Q ss_pred HHHHHHHHhc
Q 000591 84 YLKEVKDMFQ 93 (1402)
Q Consensus 84 YL~~VK~~F~ 93 (1402)
-+..+|..|+
T Consensus 659 r~~~~r~af~ 668 (731)
T KOG0339|consen 659 RITAMRTAFQ 668 (731)
T ss_pred hHHHHHHHHH
Confidence 3455666554
No 66
>PRK09807 hypothetical protein; Provisional
Probab=21.91 E-value=75 Score=32.50 Aligned_cols=49 Identities=35% Similarity=0.372 Sum_probs=39.5
Q ss_pred HHHhcCChHHHHHHHHHHHHHHh------------ccCChhHHHHHHHHHhccChhhhhhh
Q 000591 89 KDMFQDQREKYDMFLEVMKDFKA------------QRTDTAGVIARVKDLFKGHNNLIFGF 137 (1402)
Q Consensus 89 K~~F~d~p~vY~eFLeIMkdfk~------------~~idt~gVi~rV~~LFkgHpdLI~GF 137 (1402)
-.-|+.+|-....||.+=.||-+ -.+|+.-.|--|..||.|.|.||..-
T Consensus 3 aalfgcqpylvqrflavdndfaailkgngqhaavdfavdiavaipvvqtlfngqpqlisqa 63 (161)
T PRK09807 3 AALFGCQPYLVQRFLAVDNDFAAILKGNGQHAAVDFAVDIAVAIPVVQTLFNGQPQLISQA 63 (161)
T ss_pred hhhhcCcHHHHHHHHHhcchHHHHHcCCCceeeeeeeeeeeeehHHHHHHhCCChHHHHHh
Confidence 45688899999999999888864 12466677899999999999999863
No 67
>KOG0037 consensus Ca2+-binding protein, EF-Hand protein superfamily [Signal transduction mechanisms]
Probab=21.90 E-value=93 Score=35.52 Aligned_cols=19 Identities=26% Similarity=0.405 Sum_probs=9.0
Q ss_pred HHHHHHHHHhccCChhHHH
Q 000591 102 FLEVMKDFKAQRTDTAGVI 120 (1402)
Q Consensus 102 FLeIMkdfk~~~idt~gVi 120 (1402)
|=.+-..|.+.-.|-.+.|
T Consensus 56 ~~~~~~~f~~vD~d~sg~i 74 (221)
T KOG0037|consen 56 FPQLAGWFQSVDRDRSGRI 74 (221)
T ss_pred cHHHHHHHHhhCccccccc
Confidence 4455555554444444444
No 68
>PF07462 MSP1_C: Merozoite surface protein 1 (MSP1) C-terminus; InterPro: IPR010901 This entry represents the C-terminal region of merozoite surface protein 1 (MSP1), which is found in a number of Plasmodium species. MSP-1 is a 200 kDa protein expressed on the surface of the Plasmodium vivax merozoite. MSP-1 of Plasmodium species is synthesised as a high-molecular-weight precursor and then processed into several fragments. At the time of red cell invasion by the merozoite, only the 19 kDa C-terminal fragment (MSP-119), which contains two epidermal growth factor-like domains, remains on the surface. Antibodies against MSP-119 inhibit merozoite entry into red cells, and immunisation with MSP-119 protects monkeys from challenging infections. Hence, MSP-119 is considered a promising vaccine candidate [].; GO: 0009405 pathogenesis, 0016020 membrane
Probab=21.52 E-value=1.7e+02 Score=37.44 Aligned_cols=6 Identities=67% Similarity=1.364 Sum_probs=3.0
Q ss_pred HHHHHH
Q 000591 186 FLEILN 191 (1402)
Q Consensus 186 FLeIL~ 191 (1402)
||++|+
T Consensus 417 FL~VLn 422 (574)
T PF07462_consen 417 FLDVLN 422 (574)
T ss_pred HHHHHh
Confidence 555553
No 69
>PF12301 CD99L2: CD99 antigen like protein 2; InterPro: IPR022078 This family of proteins is found in eukaryotes. Proteins in this family are typically between 165 and 237 amino acids in length. CD99L2 and CD99 are involved in trans-endothelial migration of neutrophils in vitro and in the recruitment of neutrophils into inflamed peritoneum.
Probab=21.36 E-value=2.5e+02 Score=31.12 Aligned_cols=17 Identities=12% Similarity=0.229 Sum_probs=9.3
Q ss_pred hhhHHHHHHHHhcCChH
Q 000591 81 ALTYLKEVKDMFQDQRE 97 (1402)
Q Consensus 81 Al~YL~~VK~~F~d~p~ 97 (1402)
|++-|-+|-.-|..|.-
T Consensus 125 ~valvGAvsSyiaYqkK 141 (169)
T PF12301_consen 125 VVALVGAVSSYIAYQKK 141 (169)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 34566666666554433
No 70
>KOG0775 consensus Transcription factor SIX and related HOX domain proteins [Transcription]
Probab=20.79 E-value=86 Score=36.83 Aligned_cols=15 Identities=27% Similarity=0.160 Sum_probs=9.1
Q ss_pred cChhhhhhhhccCCc
Q 000591 129 GHNNLIFGFNTFLPK 143 (1402)
Q Consensus 129 gHpdLI~GFN~FLP~ 143 (1402)
|.-+-+.-|---||+
T Consensus 77 Gd~erL~rFlwsLp~ 91 (304)
T KOG0775|consen 77 GDIERLGRFLWSLPV 91 (304)
T ss_pred cCHHHHHHHHHcCch
Confidence 344555666667776
No 71
>COG5324 Uncharacterized conserved protein [Function unknown]
Probab=20.27 E-value=1.2e+02 Score=38.16 Aligned_cols=126 Identities=19% Similarity=0.253 Sum_probs=74.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCccccccchhH------HHHHHHHhhCCCH--------HHHHHH
Q 000591 558 DDRFELDMLLESVSSTAKRAEELLNSINENKITLETPFHLKDHFSAL------NLRCIERLYGDHG--------LDVMDI 623 (1402)
Q Consensus 558 DERfElDm~IE~~~~tI~~Le~l~~ki~~~~~~~~~~~~l~~~L~~i------~~R~I~rIYGd~g--------~evie~ 623 (1402)
|+..|||.+|-+...|-+.|..+-+.|..+-++..+ ++...+- |.-..++++|+.. .|+|++
T Consensus 523 d~~ield~~~~sl~nar~i~n~~~k~~p~lip~~p~----ddd~~~a~~~a~ey~pt~rk~~gn~~kkik~~itae~i~~ 598 (758)
T COG5324 523 DDIIELDPLIGSLENARRIVNYFKKNIPELIPNDPS----DDDYAAALNYAVEYVPTYRKTFGNDSKKIKNKITAEGITG 598 (758)
T ss_pred cceeecccccchhhhHHHHHHHHHhhCccccCCCCC----chHHHHHHhhhhhcCchhhhhhCCchHHhhhheehhhccc
Confidence 678899999999888888777777766655443322 2222222 3334567777432 244444
Q ss_pred HH---hCcCcchhHHHHHHHHHHHHHH--HHHHHhhHHHHHHHHHh-------------hhhhccccccchhhhhhcccc
Q 000591 624 LR---KNPAIALPVMLTRLKQKQEEWT--KCRSDFNKVWAEIYAKN-------------HYKSLDHRSFYFKQQDSKNLS 685 (1402)
Q Consensus 624 L~---knP~~AlPVVL~RLKQK~eEWr--~aq~e~nKvWrev~~KN-------------y~KSLDHq~~~FKq~DkK~ls 685 (1402)
.. +....-.-++|. ||.-|-. ..-...|+.|.+...++ -.|+...|...-|..||-+++
T Consensus 599 ~~~c~~~~~~~f~~ll~---~k~~~~sl~~vlt~a~~~wq~~~~ryt~q~s~~~~~i~~sq~~~n~q~~~~k~t~km~fr 675 (758)
T COG5324 599 SSTCFKKAPRYFGVLLD---RKTVESSLVQVLTIANLQWQEAFSRYTLQDSFHITMIHESQKPVNSQHMHDKNTTKMGFR 675 (758)
T ss_pred hHHHHHHhHHHHHHHhh---hhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhccCCCccccccccccccccee
Confidence 33 333333445555 4554444 34468899999887663 345666666666666666655
Q ss_pred hhHHH
Q 000591 686 TKSLV 690 (1402)
Q Consensus 686 sK~Lv 690 (1402)
--.|+
T Consensus 676 i~~l~ 680 (758)
T COG5324 676 ITHLV 680 (758)
T ss_pred EEEEe
Confidence 54443
Done!