Query 000591
Match_columns 1402
No_of_seqs 369 out of 664
Neff 5.0
Searched_HMMs 13730
Date Tue Mar 26 18:09:10 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000591.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_361-365//hhsearch_scop/000591hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.8 1.1E-20 8E-25 155.1 6.1 74 73-146 2-85 (85)
2 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.8 8.3E-20 6.1E-24 149.1 7.3 73 71-143 3-88 (89)
3 d1s5qb_ a.59.1.1 (B:) Sin3A {M 99.7 7.9E-18 5.8E-22 135.7 8.0 72 157-228 5-89 (89)
4 d2f05a1 a.59.1.1 (A:1-85) Sin3 99.7 1.3E-17 9.2E-22 134.3 8.3 73 157-229 2-84 (85)
5 d1wlma1 a.39.1.11 (A:8-145) Pr 15.7 19 0.0014 10.9 2.4 43 371-413 57-103 (138)
6 d1seda_ a.219.1.1 (A:) Hypothe 10.2 28 0.002 9.7 0.8 60 369-428 45-109 (112)
7 d3er7a1 d.17.4.24 (A:5-122) Un 5.1 69 0.0051 7.0 0.7 13 752-764 42-54 (118)
8 d1nula_ c.61.1.1 (A:) Xanthine 3.7 1E+02 0.0075 5.9 1.0 18 519-536 122-139 (150)
9 d2g0ua1 a.2.20.1 (A:1-84) BsaL 3.5 1.1E+02 0.0079 5.7 4.6 32 618-651 37-68 (84)
10 d1jb0j_ f.23.18.1 (J:) Subunit 3.4 1.1E+02 0.0082 5.6 1.5 12 217-228 25-36 (41)
No 1
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.81 E-value=1.1e-20 Score=155.07 Aligned_cols=74 Identities=30% Similarity=0.640 Sum_probs=68.5
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCHH----------HHHHHHHHHHCCCHHHHHHHHCCCC
Q ss_conf 877650056557999998711796889999999999883069936----------7999999985049125633100588
Q 000591 73 SQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQRTDTA----------GVIARVKDLFKGHNNLIFGFNTFLP 142 (1402)
Q Consensus 73 ~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~~idt~----------gVi~rV~~LFkgHpdLI~GFN~FLP 142 (1402)
.+.+.++||++||++||.+|+++|++|++||+||++|+.++|+++ +|+.||+.||+||||||.|||+|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCCC
Q ss_conf 5444
Q 000591 143 KGYE 146 (1402)
Q Consensus 143 ~gy~ 146 (1402)
.||+
T Consensus 82 ~~~~ 85 (85)
T d2f05a1 82 EAKR 85 (85)
T ss_dssp GGGC
T ss_pred CCCC
T ss_conf 6559
No 2
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.79 E-value=8.3e-20 Score=149.10 Aligned_cols=73 Identities=30% Similarity=0.599 Sum_probs=66.9
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHC-------------CCCHHHHHHHHHHHHCCCHHHHHHH
Q ss_conf 888776500565579999987117968899999999998830-------------6993679999999850491256331
Q 000591 71 GTSQKLTTSDALTYLKEVKDMFQDQREKYDMFLEVMKDFKAQ-------------RTDTAGVIARVKDLFKGHNNLIFGF 137 (1402)
Q Consensus 71 ~~~~~l~~~dAl~YL~~VK~~F~d~p~vY~eFLeIMkdfk~~-------------~idt~gVi~rV~~LFkgHpdLI~GF 137 (1402)
.+.+++++++|++||++||.+|+++|++|++||+||++|+.+ ++++++|++||++||+||||||.||
T Consensus 3 ~~~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~F 82 (89)
T d1s5qb_ 3 QNNQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEF 82 (89)
T ss_dssp SCCCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHH
T ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHH
T ss_conf 44699759999999999999981585999999999999997300111001212234669999999999985487999989
Q ss_pred HCCCCC
Q ss_conf 005885
Q 000591 138 NTFLPK 143 (1402)
Q Consensus 138 N~FLP~ 143 (1402)
|+|||.
T Consensus 83 n~FLPe 88 (89)
T d1s5qb_ 83 GQFLPD 88 (89)
T ss_dssp HHHSCC
T ss_pred HHHCCC
T ss_conf 966879
No 3
>d1s5qb_ a.59.1.1 (B:) Sin3A {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.72 E-value=7.9e-18 Score=135.67 Aligned_cols=72 Identities=53% Similarity=0.949 Sum_probs=67.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCC-------------CHHHHHHHHHHHHCCCHHHHHHHHH
Q ss_conf 875117999999999997707896899999999998762167-------------5888999999952029369999802
Q 000591 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEHK-------------DINEVYSEVASLFEDHADLLEEFTR 223 (1402)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~~-------------si~eV~~~Va~LF~ghpDLL~eF~~ 223 (1402)
.+|++|++|++||++||.||+++|++|.+||+||++|+++.+ +..+|+++|+.||+||||||.+|+.
T Consensus 5 ~~p~~~~~A~~yl~kVK~~f~d~p~~Y~~FL~il~~f~~~~~~~~~~~~~~~~~~~~~~v~~rV~~Lf~~hpdLi~~Fn~ 84 (89)
T d1s5qb_ 5 NQPVEFNHAINYVNKIKNRFQGQPDIYKAFLEILHTYQKEQRNAKEAGGNYTPALTEQEVYAQVARLFKNQEDLLSEFGQ 84 (89)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHHHHSCSCCCCSCCHHHHHHHHHHHSCSCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHH
T ss_conf 69975999999999999998158599999999999999730011100121223466999999999998548799998996
Q ss_pred HCCCC
Q ss_conf 08999
Q 000591 224 FLPDT 228 (1402)
Q Consensus 224 FLP~~ 228 (1402)
|||++
T Consensus 85 FLPes 89 (89)
T d1s5qb_ 85 FLPDA 89 (89)
T ss_dssp HSCCC
T ss_pred HCCCC
T ss_conf 68799
No 4
>d2f05a1 a.59.1.1 (A:1-85) Sin3B {Mouse (Mus musculus) [TaxId: 10090]}
Probab=99.71 E-value=1.3e-17 Score=134.29 Aligned_cols=73 Identities=51% Similarity=0.899 Sum_probs=68.2
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCC----------CCHHHHHHHHHHHHCCCHHHHHHHHHHCC
Q ss_conf 87511799999999999770789689999999999876216----------75888999999952029369999802089
Q 000591 157 KKTVEFEEAITFVNKIKKRFHNDEHVYKSFLEILNMYRKEH----------KDINEVYSEVASLFEDHADLLEEFTRFLP 226 (1402)
Q Consensus 157 ~~~vef~~Ai~FVnKIK~RF~~dP~vYk~FLeIL~~yk~~~----------~si~eV~~~Va~LF~ghpDLL~eF~~FLP 226 (1402)
+++++|++|++||++||.||+++|++|++||+||++|+++. .++.+|+.+|+.||++|||||.+|+.|||
T Consensus 2 ~~~~~~~dA~~yl~kVK~rf~~~p~~Y~~FL~il~~f~~~~i~~~~~~~~~~~~~ev~~~V~~Lf~~hpdLl~~F~~FLP 81 (85)
T d2f05a1 2 SDSVEFNNAISYVNKIKTRFLDHPEIYRSFLEILHTYQKEQLHTKGRPFRGMSEEEVFTEVANLFRGQEDLLSEFGQFLP 81 (85)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSSSSSSSSCCCCHHHHHHHHHHHTTTCHHHHHHHHHHSC
T ss_pred CCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHCC
T ss_conf 98643999999999999998358799999999999999861133344545677999999999998448899999997784
Q ss_pred CCC
Q ss_conf 997
Q 000591 227 DTS 229 (1402)
Q Consensus 227 ~~~ 229 (1402)
++.
T Consensus 82 ~~~ 84 (85)
T d2f05a1 82 EAK 84 (85)
T ss_dssp GGG
T ss_pred CCC
T ss_conf 655
No 5
>d1wlma1 a.39.1.11 (A:8-145) Protein cgi-38 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=15.73 E-value=19 Score=10.94 Aligned_cols=43 Identities=23% Similarity=0.313 Sum_probs=30.9
Q ss_pred HHHHHHHHHCC-HHHHHHHHHHHHHHHCC---CCCHHHHHHHHHHHH
Q ss_conf 68999985219-58899999999856238---899989999999984
Q 000591 371 IFCDKVKEKLC-SDDYQAFLKCLHIYSNG---IIKRNDLQNLVTDLL 413 (1402)
Q Consensus 371 ~FFdKVKk~L~-~~~Y~eFLKcLnLYsQe---IIsr~ELv~lV~~fL 413 (1402)
..|-|||..-. .-+|.+|+++|..-.+. -++..|.++.+..++
T Consensus 57 iiF~k~k~k~~r~i~f~~F~~aL~~iA~kk~~~~s~~e~~~~i~~~i 103 (138)
T d1wlma1 57 IVFSKVKAKSARVINYEEFKKALEELATKRFKGKSKEEAFDAICQLI 103 (138)
T ss_dssp HHHHHHSCSSCSEEEHHHHHHHHHHTHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 88987404778626799999999999998547844889999999999
No 6
>d1seda_ a.219.1.1 (A:) Hypothetical protein YhaI {Bacillus subtilis [TaxId: 1423]}
Probab=10.18 E-value=28 Score=9.73 Aligned_cols=60 Identities=23% Similarity=0.514 Sum_probs=33.2
Q ss_pred HHHHHHHHHHHCC---HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH--CCCHHHHHHHHHHHC
Q ss_conf 4368999985219---58899999999856238899989999999984--018578999866302
Q 000591 369 GFIFCDKVKEKLC---SDDYQAFLKCLHIYSNGIIKRNDLQNLVTDLL--GKYMDLMDEFNHFFE 428 (1402)
Q Consensus 369 E~~FFdKVKk~L~---~~~Y~eFLKcLnLYsQeIIsr~ELv~lV~~fL--Gk~PDLl~~Fk~FLg 428 (1402)
=+.+|+++.+-+. .+-|--|=.+|..|..-+.-+=++-.-+..++ |-+++||.+|+..+.
T Consensus 45 ~~~lCeeL~~q~~~QKaeGfv~F~~Ll~~Fag~L~~~L~v~eti~Al~~QgLf~pLM~ef~~~ik 109 (112)
T d1seda_ 45 VMRICDELSEELATQKAQGFVTFDKLLALFAGQLNEKLDVHETIFALYEQGLYQELMEVFIDIMK 109 (112)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHSCTTSCHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_conf 99999999999999987452139999999975356558999999999985672899999999987
No 7
>d3er7a1 d.17.4.24 (A:5-122) Uncharacterized protein Exig0174 {Exiguobacterium sibiricum 255-15 [TaxId: 262543]}
Probab=5.05 E-value=69 Score=7.04 Aligned_cols=13 Identities=0% Similarity=0.023 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 8999999999951
Q 000591 752 QLNKAMKLWTTFL 764 (1402)
Q Consensus 752 ~~~ki~~~~~~Fi 764 (1402)
.+++|..|+++|+
T Consensus 42 G~~ai~sFf~~FF 54 (118)
T d3er7a1 42 GIDAWKQFVRMVF 54 (118)
T ss_dssp SHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
T ss_conf 8289999999998
No 8
>d1nula_ c.61.1.1 (A:) Xanthine-guanine PRTase (XPRTase) {Escherichia coli [TaxId: 562]}
Probab=3.69 E-value=1e+02 Score=5.89 Aligned_cols=18 Identities=11% Similarity=0.331 Sum_probs=13.8
Q ss_pred CCCCCCCCCEEEECCCCC
Q ss_conf 224322357053214688
Q 000591 519 ELGAQVLNDHWVSVTSGS 536 (1402)
Q Consensus 519 eLc~sVLND~WVS~t~~S 536 (1402)
-.|.++.+|.|+-|||--
T Consensus 122 ~~~~~~~~d~WivfPWe~ 139 (150)
T d1nula_ 122 DYVVDIPQDTWIEQPWDM 139 (150)
T ss_dssp EEEEECCTTCEEECGGGC
T ss_pred CEEEECCCCCEEEECCCC
T ss_conf 279671599689938878
No 9
>d2g0ua1 a.2.20.1 (A:1-84) BsaL needle protein {Burkholderia pseudomallei [TaxId: 28450]}
Probab=3.51 E-value=1.1e+02 Score=5.71 Aligned_cols=32 Identities=28% Similarity=0.368 Sum_probs=26.5
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 7999999849675025999989988999999998
Q 000591 618 LDVMDILRKNPAIALPVMLTRLKQKQEEWTKCRS 651 (1402)
Q Consensus 618 ~evie~L~knP~~alPVVL~RLKQK~eEWr~aq~ 651 (1402)
.+.|+.|.++| -=|.+|..+..|.-||.-.|.
T Consensus 37 ~~Al~aL~~~p--sdPa~LA~yQ~~lseysl~rN 68 (84)
T d2g0ua1 37 QDAQANLTKNP--SDPTALANYQMIMSEYNLYRN 68 (84)
T ss_dssp HHHHHHHHHST--TCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCC--CCHHHHHHHHHHHHHHHHHHH
T ss_conf 99999988399--988999999999999999998
No 10
>d1jb0j_ f.23.18.1 (J:) Subunit IX of photosystem I reaction centre, PsaJ {Synechococcus elongatus [TaxId: 32046]}
Probab=3.41 E-value=1.1e+02 Score=5.60 Aligned_cols=12 Identities=58% Similarity=1.052 Sum_probs=0.0
Q ss_pred HHHHHHHHCCCC
Q ss_conf 999980208999
Q 000591 217 LLEEFTRFLPDT 228 (1402)
Q Consensus 217 LL~eF~~FLP~~ 228 (1402)
+|-||++|+||.
T Consensus 25 ~lIEiNRFfPD~ 36 (41)
T d1jb0j_ 25 ILIEFNRFYPDL 36 (41)
T ss_dssp HHHHHHHHSCCC
T ss_pred HHHHHHHHCCHH
T ss_conf 999899628525
Done!