BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000592
(1402 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O94387|YGSA_SCHPO Uncharacterized ATP-dependent helicase C29A10.10c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC29A10.10c PE=3 SV=1
Length = 1944
Score = 115 bits (288), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 147/593 (24%), Positives = 257/593 (43%), Gaps = 147/593 (24%)
Query: 825 PKLDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEF 884
P + ++YK IL + A AS+ V + + + + +F+P++ E
Sbjct: 1057 PDVQEFYKVILGWNPLADSFSASN------VEMQCVQAKFTYNDSNAYEKVFKPMLFHEC 1110
Query: 885 KAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHLVRFVHDDNDSVTSKIFSENDLVL 942
AQ+ S+ E+ Y + ++ R VD+F + F V+ S+ D+ L
Sbjct: 1111 WAQVKSAV------EEKQYPPIDLILNTRSTVDNFVDIYFTSCSPTEVS--FLSDTDICL 1162
Query: 943 LTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1002
L++ ++ + + + S L +R ++ S+ L + N+ ++
Sbjct: 1163 LSKSQSSGDTNNPKSFQLCKIQSISRKKESLELCLRMNIE--SIDLQEYAPNI----RFT 1216
Query: 1003 ATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR---GYNESRELDLGKLSQLQQIL 1059
A + + T LREF AL SL+ +PL IL+ NV+R + + ++ Q+I+
Sbjct: 1217 AQKLFNATTSLREFAALKSLRHLPLSQRILD-ANVTRLPSNFTDDKK---------QKIM 1266
Query: 1060 KT-SFNESQLQAI---SVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTS 1115
K+ NE Q AI SV G + LIQGPPGTGKT+TI+ ++ A+L TS
Sbjct: 1267 KSYGVNEPQAYAIYASSVNDGFT----------LIQGPPGTGKTKTILGMIGAVL---TS 1313
Query: 1116 PKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLIC 1175
L+ N GQ+ +K+S++ ++LIC
Sbjct: 1314 SSQGLQFNVP---------GQT-----------------------RKTSKN----KILIC 1337
Query: 1176 AQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEE 1235
A SNAA+DE++ RI K G+Y +G + P ++RVG F D++ H
Sbjct: 1338 APSNAAIDEILLRI-KAGVYDHEGIKFFPKVIRVG------------FGDSISVH----- 1379
Query: 1236 RMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDV 1295
+ TL E+++ ++ K+ + +SD + D + K D +
Sbjct: 1380 ------------AKEFTLE---EQMIKQMELTNLKKDQEANNSSDTRKKYDSIIKKRDSL 1424
Query: 1296 KLSDVE-----------LEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKS 1344
+ D+E LEA+LR++ +QK + + L + +++ + LK +++
Sbjct: 1425 R-EDLEKFRSTGKNSSILEAQLREITKQKNMLEQSLDDMRERQRSTNRNLDVLKKQIQNQ 1483
Query: 1345 ILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1397
+L+EA+IV TLS G +L + F V+IDEAAQ V
Sbjct: 1484 LLQEADIVCATLSASGHELL--------------LNAGLTFRTVIIDEAAQAV 1522
>sp|Q00416|SEN1_YEAST Helicase SEN1 OS=Saccharomyces cerevisiae (strain ATCC 204508 /
S288c) GN=SEN1 PE=1 SV=2
Length = 2231
Score = 105 bits (262), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 151/594 (25%), Positives = 246/594 (41%), Gaps = 137/594 (23%)
Query: 827 LDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKA 886
++ Y+ IL+ DY +S ++ +V F SP + + +PL+L E
Sbjct: 1113 MNPLYEIILQWDY-----TRNSEYPDDEPIGNYSDVKDFFNSPADYQKVMKPLLLLESWQ 1167
Query: 887 QLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLT-- 944
L SS ED S+ V + V DF+ V + + SE+DL+++
Sbjct: 1168 GLCSS----RDREDYKPFSIIVGNRTAVSDFYDV-YASVAKQVIQDCGISESDLIVMAYL 1222
Query: 945 -------RVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLE 997
R+S H R ++ + + +R + R + + L
Sbjct: 1223 PDFRPDKRLSSDDFKKAQHTCLAKVRTLKNTKGGNVDVTLRIH------RNHSFSKFLTL 1276
Query: 998 RSKWHATLIMSITPQLREFHALSSLKSIPLLPIILN-----PVNVSRGYNESRELDLGKL 1052
RS+ + +M +T RE+ L L+ L+ IL PVNV D ++
Sbjct: 1277 RSEIYCVKVMQMTTIEREYSTLEGLEYYDLVGQILQAKPSPPVNV----------DAAEI 1326
Query: 1053 SQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLAT 1112
+++ K N SQ +AI ++ SLIQGPPGTGKT+TI+ I+ L+T
Sbjct: 1327 ETVKKSYK--LNTSQAEAIVNSVSKEG-------FSLIQGPPGTGKTKTILGIIGYFLST 1377
Query: 1113 RTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRA-R 1171
+ + S++ I E++ ++E ++ +
Sbjct: 1378 KNASSSNV--------------------------------IKVPLEKNSSNTEQLLKKQK 1405
Query: 1172 VLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHR 1231
+LICA SNAAVDE+ R+ K G+Y G +KP LVRVG V+ ++ LVD R
Sbjct: 1406 ILICAPSNAAVDEICLRL-KSGVYDKQGHQFKPQLVRVGRSDVVNVAIKDLTLEELVDKR 1464
Query: 1232 LAEERMHL-TDPK-----NEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNML 1285
+ E + TDP+ N T+ LR L+ ++ GN P++ +
Sbjct: 1465 IGERNYEIRTDPELERKFNNAVTKRRELRGKLD---------------SESGN--PESPM 1507
Query: 1286 DDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELG--VAQVQEKKS--YEETKALKHKL 1341
E D+ +L+ K+R+L +I ELG +++EK S Y +
Sbjct: 1508 STE-----DIS----KLQLKIREL----SKIINELGRDRDEMREKNSVNYRNRDLDRRNA 1554
Query: 1342 RKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQ 1395
+ IL ++I+ +TLSG D+ G K FD V+IDEA Q
Sbjct: 1555 QAHILAVSDIICSTLSGSAHDVLATM-----GIK---------FDTVIIDEACQ 1594
>sp|Q92355|SEN1_SCHPO Helicase sen1 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=sen1 PE=1 SV=1
Length = 1687
Score = 103 bits (256), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 147/599 (24%), Positives = 256/599 (42%), Gaps = 115/599 (19%)
Query: 805 PFENRCGLHRMETGVKRFGPPKLDDWYKPILEIDYFATVGLASSREDENRV---HCKLKE 861
P + R +R VK P + D+YK IL + + + N V H +
Sbjct: 895 PSQIRMMTNRNVANVKARLFPSMTDFYKEILSWE--------PANQSPNPVLKFHKLDGK 946
Query: 862 VPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVER--VDDFHL 919
+ F++ E ++ + +P++ E +Q+ S+ L D+ + + + VER V++F
Sbjct: 947 IIDSFKTVEHYMEVLQPMIFMECWSQIQSTKL------DLKFSPVEGIMVERTAVNNFVD 1000
Query: 920 VRFVHDDNDSVTSKIFSENDLVLLTRVSPQKTPHDVHMVGKVERRERDNNRRSSILLIRF 979
+ D ++ + L + + KVER R N +L++
Sbjct: 1001 IGVSVAPKDLYGYPLYDTEVVSLAFNKEDASSMKGLCCFAKVERIVRQTN---GVLVVLR 1057
Query: 980 YLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSR 1039
L + + LN+ + N + W L ++ R++ + L L I+ S+
Sbjct: 1058 TLPSMEI-LNKLQGNC---ALWFLKL-TNLATFTRQYAGIRGLPYFHLADDIIRARPCSQ 1112
Query: 1040 GYNESRELDLGKLSQLQQILK-TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGK 1098
S S+++ +K NE Q +AI A+ + +LIQGPPGTGK
Sbjct: 1113 PVKHSS-------SEIKAAMKRYQVNEPQAKAIMCALD-------NNGFTLIQGPPGTGK 1158
Query: 1099 TRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAALARQINEDSE 1158
T+TI+ I+SALL + + H+ +RP N+ S
Sbjct: 1159 TKTIIGIISALLVDLS--RYHI---------TRP---------------------NQQS- 1185
Query: 1159 RDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPN 1218
KS+ES + ++L+CA SNAAVDE++ R+ K G +G+ Y P +VR+GN +T++ +
Sbjct: 1186 ---KSTES--KQQILLCAPSNAAVDEVLLRL-KRGFLLENGEKYIPRVVRIGNPETINVS 1239
Query: 1219 SLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGN 1278
++ + +L E D + + R + +I E + +D
Sbjct: 1240 VRDLSLEYQTEKQLLEVNQGAIDLGS--LQELTRWRDTFYDCIQKIEELEKQIDVARDVA 1297
Query: 1279 SDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALK 1338
D K++ + +K ++ L++ ++E EL Q Q +E L+
Sbjct: 1298 EDTKSLGKELQNKINEKNLAEQKVE---------------EL---QSQSFTKNKEVDLLR 1339
Query: 1339 HKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1397
K +K+ILK+A++V TLSG G DL V S++ F V+IDEAAQ V
Sbjct: 1340 KKAQKAILKQADVVCATLSGSGHDL--VAHSSLN------------FSTVIIDEAAQAV 1384
>sp|B6SFA4|MAA3_ARATH Probable helicase MAGATAMA 3 OS=Arabidopsis thaliana GN=MAA3 PE=2
SV=1
Length = 818
Score = 102 bits (254), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 123/466 (26%), Positives = 206/466 (44%), Gaps = 84/466 (18%)
Query: 830 WYKPILEIDYFATVGLASSREDENRVHCK--LKEVPVCFQSPEQFVSIFRPLVLEEFKAQ 887
+Y IL DY L E +NR K L V ++ + + F PL+ EE KAQ
Sbjct: 19 FYNIILGWDYKQ---LTKENERKNRKDSKEKLNVVKNTYKDVDDYFETFEPLLFEEVKAQ 75
Query: 888 LHSSFLEMSSWEDMYYGSLS-VLSVERVDDFH--LVRFVHDDNDSVTSKIFSENDLVLLT 944
+ L+ E+ + V+ + FH LV + H++++ ++NDL+LL+
Sbjct: 76 I----LQNKDGEEASVCKMRLVMECNEGEGFHFLLVTYEHEEDE-----YLAQNDLLLLS 126
Query: 945 R--VSPQKTPHDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWH 1002
+ V P + VE +R++++L +R YL V++ + ++ +S
Sbjct: 127 KEEVKGNSFPSS-YGFAVVE------HRQNNLLRLRMYLAEDIVQITKNTKSSRTKSFIQ 179
Query: 1003 A-----TLIMS----------------ITPQLREFHALSSLKSIPLLPIILNPVNVSRGY 1041
A +LI S ++ +RE+ AL S+ S+P +I S G+
Sbjct: 180 ALSNMRSLITSSASPIDKRVFSLKLCGLSTIIREYIALRSVSSLPFKDLIFTAAEKSCGF 239
Query: 1042 NESRELDLGKLSQ-LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTR 1100
+ + K+S L + + N+SQ +AI V + S LIQGPPGTGKT+
Sbjct: 240 GD----EAWKISGPLNEFFNENLNKSQKEAIDVGLSRKS-------FVLIQGPPGTGKTQ 288
Query: 1101 TIVAIVSALL-ATRTSPKSH-------------LKQNYSSCINSRPKI----GQSAAIAR 1142
TI++I+ A++ AT +S +++ Y+ + P I + A +
Sbjct: 289 TILSILGAIMHATPARVQSKGTDHEVKRGIQMTIQEKYNHWGRASPWILGVNPRDAIMPE 348
Query: 1143 AWQDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTY 1202
D NE +S R RVL+CA SN+A+DE+V R+ GL + +TY
Sbjct: 349 DGDDGFFPTSGNELKPEVVNASRK-YRLRVLVCAPSNSALDEIVLRLLSSGLRDENAQTY 407
Query: 1203 KPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCT 1248
P +VR+G +K H +DH +A++R D + T
Sbjct: 408 TPKIVRIG-LKAHHS-----VASVSLDHLVAQKRGSAIDKPKQGTT 447
>sp|A2AKX3|SETX_MOUSE Probable helicase senataxin OS=Mus musculus GN=Setx PE=2 SV=1
Length = 2646
Score = 95.5 bits (236), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 140/563 (24%), Positives = 227/563 (40%), Gaps = 126/563 (22%)
Query: 860 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 919
+ VPV FQ ++ ++F PL++ + +L + E+ Y L + +
Sbjct: 1712 RPVPVRFQDCAEYFNVFLPLIILNAFETVAQEWLSSPNKENFYQLQLRKFPADYKKYWEF 1771
Query: 920 VRFVHDDNDSVTSKIF--SENDLVLLTRVSPQKTPHDVH--------MVGKVERRERDNN 969
+ ++ N+S +K ENDLV L +P+K+ D H G V + R +
Sbjct: 1772 LIYL---NESELAKQLHPKENDLVFL---APEKSYMDRHGMQDCSHYYCGYVHKFRRTSV 1825
Query: 970 RRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLP 1029
RS +Q L + +NL +I S+ R+ A+S L S L
Sbjct: 1826 MRSGKAECSLCIQTQDT-LPASVKNLT-----RCIVISSLVTTQRKLKAMSLLSSRNQLA 1879
Query: 1030 -IILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELS 1088
+LNP + +++L ++ LK FNE Q +AI A + ++
Sbjct: 1880 RAVLNPNPMDFC---TKDLLTTTSERIVAYLK-DFNEDQKKAIETAYAMVKHSPSVAKIC 1935
Query: 1089 LIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQDAA 1148
LI GPPGTGK++TIV ++ LL T K H +N+++ KI Q+
Sbjct: 1936 LIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDENFNA------KIKQN----------- 1977
Query: 1149 LARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLYGSDG 1199
RVL+CA SNAAVDEL+ +I K+ G+ G
Sbjct: 1978 ----------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPLGNCG 2015
Query: 1200 KTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRSNLEK 1259
LVR+G K+++ L F +D+ V+HR+ ++ L E R L + L++
Sbjct: 2016 DI---NLVRLGPEKSINTEVLKFSLDSQVNHRMKKD---LPSHIQEMLRRKEILDAQLDE 2069
Query: 1260 LVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQIYRE 1319
L +RA + G + LD+ + V EL +K++
Sbjct: 2070 L-------SRQRALCRGGREMQRQELDEHIAI---VSKERQELASKIK------------ 2107
Query: 1320 LGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFKFGNP 1379
E + + + +I+ E+ ++ TLS GG L ES + G P
Sbjct: 2108 -------------EVQGRPQRAQNTIILESHVICCTLSTSGGLLL----ESAFRGQGGVP 2150
Query: 1380 SENTLFDAVVIDEAAQVVLVHEL 1402
F V++DEA Q V L
Sbjct: 2151 -----FSCVIVDEAGQSCEVETL 2168
>sp|Q86AS0|Y4399_DICDI Probable helicase DDB_G0274399 OS=Dictyostelium discoideum
GN=DDB_G0274399 PE=3 SV=1
Length = 967
Score = 94.4 bits (233), Expect = 7e-18, Method: Compositional matrix adjust.
Identities = 82/303 (27%), Positives = 142/303 (46%), Gaps = 61/303 (20%)
Query: 946 VSPQKTP-----HDVHMVGKVERRERDNNRRSSILLIRFYLQNGSVRLNQARR-NLLERS 999
+ P KTP +H++G VE + + ++FY++ ++ ++AR+ +LL R
Sbjct: 223 IPPSKTPITEQNRTLHLIGTVEHLDNGG------IKVKFYVK--GIKGDRARQVSLLLRY 274
Query: 1000 K--WHATLIMSITPQLREFHALSSLKSIPLLPIILNPVNVSRGYNESRELDLGKLSQLQQ 1057
+ W T + +++ REF AL + ++ R + + + L
Sbjct: 275 EIDWWTTKLCNLSTLQREFAALYQCSQSNFMKTLM-----MRDDDGEDGIVMKIPPLLHD 329
Query: 1058 ILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1117
+++N+SQL A++ A+ + ++LIQGPPGTGKT I+ ++S LL + PK
Sbjct: 330 QFSSTYNDSQLNALTSAL-------EGNAITLIQGPPGTGKTHVILGLISVLLHSTIVPK 382
Query: 1118 ---------SHLKQNYSSCINSRPKIGQSAAIARAWQDAALAR------QINED-SERDK 1161
HL ++ + + + I++ W + I+ D ERD+
Sbjct: 383 VKSGGNNLGDHLLKDRELSMAEKRDLWN---ISQPWFNKEFPHIRDNYELIDYDFEERDQ 439
Query: 1162 KSSE--------------SSVRARVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLV 1207
K S + R+L+CA SN AVDE+VSR+ ++GL +DG+ Y P LV
Sbjct: 440 KRKRDLWRKLRDTGSVKGGSTKRRILLCAPSNGAVDEIVSRLIRDGLLNADGRKYNPNLV 499
Query: 1208 RVG 1210
RVG
Sbjct: 500 RVG 502
Score = 46.6 bits (109), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 63/123 (51%), Gaps = 14/123 (11%)
Query: 827 LDDWYKPILEIDYFATVGLASSREDENRVHCKLKEVPVCFQSPEQFVSIFRPLVLEEFKA 886
+D +YK IL D S +E E LK V V F + E +++ + PL+ EE +A
Sbjct: 41 IDRFYKHILTWD----ASDLSPKEKE------LKPVKVSFNNEEDYITTYEPLLFEECRA 90
Query: 887 QLHSSFLEMSSWEDMYYGSLS-VLSVERVDDFHLVRFVHDDNDSVTSKIFSENDLVLLTR 945
QL S +E +D +LS V + V+DF +V V +N ++ F +NDL++++
Sbjct: 91 QLERS-IEEGEKDDTSEPTLSRVRYISEVNDFLVVGLVMAENVNIFQ--FHDNDLIMISL 147
Query: 946 VSP 948
P
Sbjct: 148 HHP 150
>sp|Q7Z333|SETX_HUMAN Probable helicase senataxin OS=Homo sapiens GN=SETX PE=1 SV=4
Length = 2677
Score = 84.3 bits (207), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 134/567 (23%), Positives = 221/567 (38%), Gaps = 129/567 (22%)
Query: 860 KEVPVCFQSPEQFVSIFRPLVLEEFKAQLHSSFLEMSSWEDMYYGSLSVLSVERVDDFHL 919
+ VPV F + + ++F PL++ + +L + E+ Y + + + +
Sbjct: 1731 RPVPVRFHNYGDYFNVFFPLMVLNTFETVAQEWLNSPNRENFYQLQVRKFPADYIKYWEF 1790
Query: 920 VRFVHDDNDSVTSKIF-SENDLVLLT--RVSPQKTP---------HDVH--MVGKVERRE 965
++ + + +++ ENDLV L R++ +K H+ H V K R
Sbjct: 1791 AVYLEEC--ELAKQLYPKENDLVFLAPERINEEKKDTERNDIQDLHEYHSGYVHKFRRTS 1848
Query: 966 RDNNRRSSILLIRFYLQNGSVRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSI 1025
N ++ L +N LN+ + +I S+ R+ A+S L S
Sbjct: 1849 VMRNGKTECYLSIQTQENFPANLNEL---------VNCIVISSLVTTQRKLKAMSLLGSR 1899
Query: 1026 -PLLPIILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKD 1084
L +LNP + +++L ++ L+ FNE Q +AI A +
Sbjct: 1900 NQLARAVLNPNPMDFC---TKDLLTTTSERIIAYLR-DFNEDQKKAIETAYAMVKHSPSV 1955
Query: 1085 CELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAW 1144
++ LI GPPGTGK++TIV ++ LL T K H +N S KI Q+
Sbjct: 1956 AKICLIHGPPGTGKSKTIVGLLYRLL-TENQRKGHSDEN------SNAKIKQN------- 2001
Query: 1145 QDAALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRI---------SKEGLY 1195
RVL+CA SNAAVDEL+ +I K+
Sbjct: 2002 --------------------------RVLVCAPSNAAVDELMKKIILEFKEKCKDKKNPL 2035
Query: 1196 GSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDHRLAEERMHLTDPKNEFCTRSSTLRS 1255
G+ G LVR+G K+++ L F +D+ V+HR+ K E + +
Sbjct: 2036 GNCGDI---NLVRLGPEKSINSEVLKFSLDSQVNHRM----------KKELPSHVQAMHK 2082
Query: 1256 NLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVHKGDDVKLSDVELEAKLRKLYEQKKQ 1315
E L ++ +RA + G + LD+ + K V EL +K++
Sbjct: 2083 RKEFLDYQLDELSRQRALCRGGREIQRQELDENISK---VSKERQELASKIK-------- 2131
Query: 1316 IYRELGVAQVQEKKSYEETKALKHKLRKSILKEAEIVVTTLSGCGGDLYGVCSESVSGFK 1375
E + K + I+ E+ I+ TLS GG L ES +
Sbjct: 2132 -----------------EVQGRPQKTQSIIILESHIICCTLSTSGGLLL----ESAFRGQ 2170
Query: 1376 FGNPSENTLFDAVVIDEAAQVVLVHEL 1402
G P F V++DEA Q + L
Sbjct: 2171 GGVP-----FSCVIVDEAGQSCEIETL 2192
>sp|Q8R151|ZNFX1_MOUSE NFX1-type zinc finger-containing protein 1 OS=Mus musculus GN=Znfx1
PE=2 SV=3
Length = 1909
Score = 46.2 bits (108), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 59/250 (23%), Positives = 105/250 (42%), Gaps = 55/250 (22%)
Query: 884 FKAQLHSSFLEMSSWED---MYYGSLSVLSVERVDDFHLVRFVHDDNDSVTSKI----FS 936
+K Q + L++ W++ + YGSL +S + + F + +++ + I F+
Sbjct: 421 YKVQFDTKPLKLVRWQNSKRLLYGSLVCMSKDNFETFLFATVSNREHEDLCQGIVQLCFN 480
Query: 937 ENDLVLLTRVSPQKTPHDVH-----------MVGKVERRERDNNRRSSILLIRFYLQNGS 985
E LL V P + V + G E +E D + +I+ Y++N
Sbjct: 481 EQSQQLLADVQPSDSFLMVETTAYFEAYRHVLEGLQEVQEEDVPFQRNIVQCDSYVRNP- 539
Query: 986 VRLNQARRNLLERSKWHATLIMSITPQLREFHALSSLKSIPLLPIILNP-VNVSRGYNES 1044
R LL ++ T +M +R KS+ + +P +NV
Sbjct: 540 -------RYLLMGGRYDFTPLMENPSAMR--------KSLRGAEALRHPRINV------- 577
Query: 1045 RELDLGKLSQLQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVA 1104
D G+ + + ++SQ++A+ A+ EL++IQGPPGTGKT +
Sbjct: 578 --FDFGQWPSKEAL---KLDDSQMEALQFALTK--------ELAIIQGPPGTGKTYVGLK 624
Query: 1105 IVSALLATRT 1114
IV ALL ++
Sbjct: 625 IVQALLTNKS 634
>sp|O94247|HCS1_SCHPO DNA polymerase alpha-associated DNA helicase A OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=hcs1 PE=3 SV=1
Length = 660
Score = 43.5 bits (101), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 29/48 (60%), Gaps = 7/48 (14%)
Query: 1063 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1110
N SQ +A+ +I + ELSLI GPPGTGKT T+V I+ L+
Sbjct: 210 LNASQKKAVKFSIAVK-------ELSLIHGPPGTGKTHTLVEIIQQLV 250
Score = 35.0 bits (79), Expect = 4.2, Method: Compositional matrix adjust.
Identities = 51/227 (22%), Positives = 90/227 (39%), Gaps = 86/227 (37%)
Query: 1171 RVLICAQSNAAVDELVSRISKEGLYGSDGKTYKPYLVRVGNVKTVHPNSLPFFIDTLVDH 1230
R+L+C SN AVD +V R+S G+ P +VR+G HP L + +++DH
Sbjct: 255 RILVCGASNLAVDNIVDRLSSSGI---------P-MVRLG-----HPARL---LPSILDH 296
Query: 1231 RLAEERMHLTDPKNEFCTRSSTLRSNLEKLVDRIRFFEAKRANTKDGNSDPKNMLDDEVH 1290
L + +R+ + + + I +K TK+G
Sbjct: 297 SL------------DVLSRTGDNGDVIRGISEDIDVCLSKITKTKNGR------------ 332
Query: 1291 KGDDVKLSDVELEAKLRKLYEQKKQIYRELGVAQVQEKKSYEETKALKHKLRKSILKEAE 1350
++++IY+ + + +K Y + +A K +I+ ++
Sbjct: 333 ---------------------ERREIYKNIR----ELRKDYRKYEA---KTVANIVSASK 364
Query: 1351 IVVTTLSGCGGDLYGVCSESVSGFKFGNPSENTLFDAVVIDEAAQVV 1397
+V TL G G S + G + FDAV+IDEA+Q +
Sbjct: 365 VVFCTLHGAG-------SRQLKGQR---------FDAVIIDEASQAL 395
>sp|P34243|HCS1_YEAST DNA polymerase alpha-associated DNA helicase A OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=HCS1 PE=1 SV=1
Length = 683
Score = 42.4 bits (98), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 34/56 (60%), Gaps = 8/56 (14%)
Query: 1055 LQQILKTSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1110
++ L + N+SQ AI+ AI + +L++I GPPGTGKT T++ ++ LL
Sbjct: 200 IKSFLNPNLNDSQKTAINFAI--------NNDLTIIHGPPGTGKTFTLIELIQQLL 247
>sp|Q09820|RENT1_SCHPO ATP-dependent helicase upf1 OS=Schizosaccharomyces pombe (strain 972
/ ATCC 24843) GN=upf1 PE=3 SV=2
Length = 925
Score = 40.8 bits (94), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 32/108 (29%), Positives = 42/108 (38%), Gaps = 49/108 (45%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1146
LSLIQGPPGTGKT T ++V L ++
Sbjct: 409 LSLIQGPPGTGKTVTSASVVYHLATMQS-------------------------------- 436
Query: 1147 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1194
R +KS + VL+CA SN AVD+L +I + GL
Sbjct: 437 ------------RKRKS-----HSPVLVCAPSNVAVDQLAEKIHRTGL 467
>sp|Q9P2E3|ZNFX1_HUMAN NFX1-type zinc finger-containing protein 1 OS=Homo sapiens GN=ZNFX1
PE=1 SV=2
Length = 1918
Score = 40.8 bits (94), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 21/52 (40%), Positives = 31/52 (59%), Gaps = 8/52 (15%)
Query: 1063 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRT 1114
++SQ++A+ A+ EL++IQGPPGTGKT + IV ALL +
Sbjct: 598 LDDSQMEALQFALTR--------ELAIIQGPPGTGKTYVGLKIVQALLTNES 641
>sp|P40694|SMBP2_MOUSE DNA-binding protein SMUBP-2 OS=Mus musculus GN=Ighmbp2 PE=1 SV=1
Length = 993
Score = 40.4 bits (93), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 38/119 (31%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 1061 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK--- 1117
T+ + SQ +A+S A+ EL++I GPPGTGKT T+V I+ L A + K
Sbjct: 189 TTLDLSQKEAVSFALAQK-------ELAIIHGPPGTGKTTTVVEII--LQAVKQGLKVLC 239
Query: 1118 --------SHLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1160
+L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 240 CAPSNIAVDNLVERLALCKKRILRLGHPARLLESVQHHSLDAVLARSDNAQIVADIRRD 298
>sp|Q9EQN5|SMBP2_RAT DNA-binding protein SMUBP-2 OS=Rattus norvegicus GN=Ighmbp2 PE=1 SV=1
Length = 988
Score = 40.0 bits (92), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 37/119 (31%), Positives = 55/119 (46%), Gaps = 28/119 (23%)
Query: 1061 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK--- 1117
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+ L A + K
Sbjct: 189 TTLDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEII--LQAVKQGLKVLC 239
Query: 1118 --------SHLKQNYSSCINSRPKIGQSAAIARAWQ----DAALAR----QINEDSERD 1160
+L + + C ++G A + + Q DA LAR QI D RD
Sbjct: 240 CAPSNIAVDNLVERLALCKKQILRLGHPARLLESVQQHSLDAVLARSDNAQIVADIRRD 298
>sp|Q57568|Y104_METJA Uncharacterized ATP-dependent helicase MJ0104 OS=Methanocaldococcus
jannaschii (strain ATCC 43067 / DSM 2661 / JAL-1 / JCM
10045 / NBRC 100440) GN=MJ0104 PE=3 SV=1
Length = 663
Score = 40.0 bits (92), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/45 (48%), Positives = 28/45 (62%), Gaps = 7/45 (15%)
Query: 1062 SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1106
+ NESQ A+ A+ LS +L LI GPPGTGKTRTI ++
Sbjct: 184 NLNESQKLAVKKAV-LSR------DLYLIHGPPGTGKTRTITEVI 221
>sp|Q60560|SMBP2_MESAU DNA-binding protein SMUBP-2 OS=Mesocricetus auratus GN=IGHMBP2 PE=1
SV=1
Length = 989
Score = 39.7 bits (91), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1061 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1106
T+ + SQ +A+S A+ E+++I GPPGTGKT T+V I+
Sbjct: 189 TALDPSQKEAVSFALAQK-------EVAIIHGPPGTGKTTTVVEII 227
>sp|Q9FJR0|RENT1_ARATH Regulator of nonsense transcripts 1 homolog OS=Arabidopsis thaliana
GN=UPF1 PE=1 SV=2
Length = 1254
Score = 39.3 bits (90), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 39/108 (36%), Gaps = 55/108 (50%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1146
+SLIQGPPGTGKT T AIV + K GQ
Sbjct: 505 ISLIQGPPGTGKTVTSAAIVYHMA----------------------KQGQG--------- 533
Query: 1147 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1194
+VL+CA SN AVD+L +IS GL
Sbjct: 534 ------------------------QVLVCAPSNVAVDQLAEKISATGL 557
>sp|Q98TR3|RENT1_TAKRU Putative regulator of nonsense transcripts 1 OS=Takifugu rubripes
GN=rent1 PE=3 SV=1
Length = 1097
Score = 39.3 bits (90), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1146
LSLIQGPPGTGKT T IV
Sbjct: 469 LSLIQGPPGTGKTVTSATIVY--------------------------------------- 489
Query: 1147 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1194
L+RQ N VL+CA SN AVD+L +I K GL
Sbjct: 490 -HLSRQGN---------------GPVLVCAPSNIAVDQLTEKIDKTGL 521
>sp|Q9EPU0|RENT1_MOUSE Regulator of nonsense transcripts 1 OS=Mus musculus GN=Upf1 PE=1 SV=2
Length = 1124
Score = 38.9 bits (89), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1146
LSLIQGPPGTGKT T IV
Sbjct: 493 LSLIQGPPGTGKTVTSATIV---------------------------------------- 512
Query: 1147 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1194
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 513 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 545
>sp|Q92900|RENT1_HUMAN Regulator of nonsense transcripts 1 OS=Homo sapiens GN=UPF1 PE=1 SV=2
Length = 1129
Score = 38.9 bits (89), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 38/108 (35%), Gaps = 55/108 (50%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSCINSRPKIGQSAAIARAWQD 1146
LSLIQGPPGTGKT T IV
Sbjct: 498 LSLIQGPPGTGKTVTSATIV---------------------------------------- 517
Query: 1147 AALARQINEDSERDKKSSESSVRARVLICAQSNAAVDELVSRISKEGL 1194
LARQ N VL+CA SN AVD+L +I + GL
Sbjct: 518 YHLARQGN---------------GPVLVCAPSNIAVDQLTEKIHQTGL 550
>sp|Q8GYD9|SDE3_ARATH Probable RNA helicase SDE3 OS=Arabidopsis thaliana GN=SDE3 PE=1 SV=1
Length = 1002
Score = 38.1 bits (87), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 31/118 (26%), Positives = 52/118 (44%), Gaps = 20/118 (16%)
Query: 1015 EFHALSSLKSIPLLPIILNPVNVSRGY---NESRELD----LGKLSQLQQILKT------ 1061
EFH + S+ + N +N R Y + + LD L ++++KT
Sbjct: 334 EFHQRHTAGSVYNVRFTYNRINTRRLYQAVDAAEMLDPNFLFPSLHSGKRMIKTKPFVPI 393
Query: 1062 --SFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPK 1117
+ N Q+ +I + +G K +I GPPGTGKT T+V + L T+ + +
Sbjct: 394 SPALNAEQICSIEMVLGC-----KGAPPYVIHGPPGTGKTMTLVEAIVQLYTTQRNAR 446
>sp|P38935|SMBP2_HUMAN DNA-binding protein SMUBP-2 OS=Homo sapiens GN=IGHMBP2 PE=1 SV=3
Length = 993
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 29/46 (63%), Gaps = 7/46 (15%)
Query: 1061 TSFNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIV 1106
T + SQ +A+ A+ S K EL++I GPPGTGKT T+V I+
Sbjct: 190 TCLDTSQKEAVLFAL----SQK---ELAIIHGPPGTGKTTTVVEII 228
>sp|Q10GP0|Y3198_ORYSJ Putative B3 domain-containing protein Os03g0619850 OS=Oryza sativa
subsp. japonica GN=Os03g0619850 PE=3 SV=1
Length = 253
Score = 36.6 bits (83), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 25/86 (29%), Positives = 42/86 (48%), Gaps = 1/86 (1%)
Query: 654 ISDKRASQTESLK-NRVSILDSSKDLLDGSGPASPKQVLDESVGKSLNSLDSKVVDGKKK 712
I D S+ SLK NR + D S++ D GPA P +L L+SL K++ K +
Sbjct: 115 ILDSDGSENVSLKSNRNGVSDESQESEDSEGPAGPPYILSWKSKSRLSSLQKKIIKEKVR 174
Query: 713 ESNSKFNASDSLSFQNRVGLRNKPVE 738
S+ ++ ++ +GL + P +
Sbjct: 175 SIQSEVPIYVAIMNKSNIGLTSSPCQ 200
>sp|Q9VYS3|RENT1_DROME Regulator of nonsense transcripts 1 homolog OS=Drosophila
melanogaster GN=Upf1 PE=1 SV=2
Length = 1180
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 26/48 (54%), Gaps = 8/48 (16%)
Query: 1063 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1110
N SQ+ A+ A+ LSLIQGPPGTGKT T IV L+
Sbjct: 452 LNRSQVYAVKHAL--------QRPLSLIQGPPGTGKTVTSATIVYQLV 491
>sp|A2ARV4|LRP2_MOUSE Low-density lipoprotein receptor-related protein 2 OS=Mus musculus
GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 25/82 (30%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 708 DGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELV-C 766
DGK NS N L F NR +RN ++ +S+ + Q NVVA +++ + L
Sbjct: 3189 DGKSCRQNS--NIEPYLVFSNRYYIRNLTIDGTSYSLILQGLGNVVALDFDRVEERLYWI 3246
Query: 767 DVENDPLESSFKSGKHQQTYLT 788
D E +E F + +Q+T ++
Sbjct: 3247 DAEKQIIERMFLNKTNQETIIS 3268
>sp|O76512|RENT1_CAEEL Regulator of nonsense transcripts 1 OS=Caenorhabditis elegans
GN=smg-2 PE=1 SV=1
Length = 1069
Score = 36.2 bits (82), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 21/48 (43%), Positives = 25/48 (52%), Gaps = 8/48 (16%)
Query: 1063 FNESQLQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1110
N SQ+QA+ + LSLIQGPPGTGKT IV L+
Sbjct: 446 LNSSQMQAVKQVLTRP--------LSLIQGPPGTGKTVVSATIVYHLV 485
>sp|Q04YY5|RUVB_LEPBL Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain L550) GN=ruvB
PE=3 SV=1
Length = 341
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1068 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1127
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1128 INSRPKIGQSAAIAR 1142
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|Q04UI9|RUVB_LEPBJ Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
borgpetersenii serovar Hardjo-bovis (strain JB197)
GN=ruvB PE=3 SV=1
Length = 341
Score = 36.2 bits (82), Expect = 1.8, Method: Composition-based stats.
Identities = 26/75 (34%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1068 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1127
L ++V + + + K+ + LI GPPG GKT T+ IVS L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIVSNELGTRLT------------ 80
Query: 1128 INSRPKIGQSAAIAR 1142
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|P30771|NAM7_YEAST ATP-dependent helicase NAM7 OS=Saccharomyces cerevisiae (strain ATCC
204508 / S288c) GN=NAM7 PE=1 SV=1
Length = 971
Score = 35.8 bits (81), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 17/23 (73%), Positives = 17/23 (73%)
Query: 1087 LSLIQGPPGTGKTRTIVAIVSAL 1109
LSLIQGPPGTGKT T IV L
Sbjct: 425 LSLIQGPPGTGKTVTSATIVYHL 447
>sp|Q8F7Y2|RUVB_LEPIN Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar Lai
(strain 56601) GN=ruvB PE=3 SV=1
Length = 341
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1068 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1127
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1128 INSRPKIGQSAAIAR 1142
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|P61534|RUVB_LEPIC Holliday junction ATP-dependent DNA helicase RuvB OS=Leptospira
interrogans serogroup Icterohaemorrhagiae serovar
copenhageni (strain Fiocruz L1-130) GN=ruvB PE=3 SV=1
Length = 341
Score = 35.8 bits (81), Expect = 2.7, Method: Composition-based stats.
Identities = 25/75 (33%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 1068 LQAISVAIGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALLATRTSPKSHLKQNYSSC 1127
L ++V + + + K+ + LI GPPG GKT T+ I+S L TR +
Sbjct: 34 LNNLTVYVQAAKNRKRALDHVLISGPPGLGKT-TLAGIISNELGTRLT------------ 80
Query: 1128 INSRPKIGQSAAIAR 1142
I S P I + A +AR
Sbjct: 81 ITSAPVITKGADLAR 95
>sp|P98158|LRP2_RAT Low-density lipoprotein receptor-related protein 2 OS=Rattus
norvegicus GN=Lrp2 PE=1 SV=1
Length = 4660
Score = 35.0 bits (79), Expect = 3.9, Method: Composition-based stats.
Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
Query: 708 DGKKKESNSKFNASDSLSFQNRVGLRNKPVESSSFKNVNQASSNVVAKPTNKLLKELV-C 766
DGK NS N L F NR +RN + SS+ + Q NVVA +++ K L
Sbjct: 3189 DGKSCRQNS--NIEPYLIFSNRYYIRNLTTDGSSYSLILQGLGNVVALDFDRVEKRLYWI 3246
Query: 767 DVENDPLESSFKSGKHQQTYL 787
D E +E F + +++T +
Sbjct: 3247 DAEKQIIERMFLNKTNRETII 3267
>sp|Q54I89|RENT1_DICDI Regulator of nonsense transcripts 1 OS=Dictyostelium discoideum
GN=upf1 PE=3 SV=1
Length = 1331
Score = 35.0 bits (79), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 32/96 (33%), Positives = 41/96 (42%), Gaps = 27/96 (28%)
Query: 1016 FHALSSLKSIPLLPI-ILNPVNVSRGYNESRELDLGKLSQLQQILKTSFNESQLQAISVA 1074
+HAL IP P+ I P N L L +L NESQ+ A++
Sbjct: 507 YHALLGHPDIPPAPLDIQLPTN----------FHLKNLPRL--------NESQISAVNKV 548
Query: 1075 IGLSSSWKKDCELSLIQGPPGTGKTRTIVAIVSALL 1110
+ LSLIQGPPGTGKT I+ L+
Sbjct: 549 L--------TAPLSLIQGPPGTGKTVISSFIIHHLV 576
>sp|Q7MA56|RPOBC_WOLSU Bifunctional DNA-directed RNA polymerase subunit beta-beta'
OS=Wolinella succinogenes (strain ATCC 29543 / DSM 1740 /
LMG 7466 / NCTC 11488 / FDC 602W) GN=rpoBC PE=3 SV=1
Length = 2883
Score = 34.3 bits (77), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 35/75 (46%), Gaps = 4/75 (5%)
Query: 1128 INSRPKIGQSAAIARAWQDAALARQINEDSERDKKSSESSVRARVLICAQSN--AAVDEL 1185
+ SR IGQ + L QINE E K ++RA+++ AQ + VDE
Sbjct: 1133 VPSRMNIGQILEVHLGLVGKKLGAQINEMFENQTKDWMGALRAKIIEIAQVSKMTGVDEF 1192
Query: 1186 VSRISKEGL--YGSD 1198
VS +S E L Y D
Sbjct: 1193 VSSLSDEALLSYARD 1207
>sp|P84634|DCL4_ARATH Dicer-like protein 4 OS=Arabidopsis thaliana GN=DCL4 PE=1 SV=2
Length = 1702
Score = 34.3 bits (77), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 55/121 (45%), Gaps = 7/121 (5%)
Query: 300 KCIL--EQVSNTRGLASGLKFLSSSTSSLSAIFLGLKHALKLVQ---LDSVLLKFQSLHH 354
KCI+ ++ R L+ L L S S +GL LK + ++++L +FQS
Sbjct: 490 KCIIFVNRIVTARTLSCILNNLELLRSWKSDFLVGLSSGLKSMSRRSMETILKRFQSKEL 549
Query: 355 FFFVLRKIFEEG-HLPKCDLLKSSSGHSSITMFSSQGGFLRQPQFE-SFDANTGCSSNID 412
V K+ EEG + C L+ ++T F G R PQ E +F ++G +D
Sbjct: 550 NLLVATKVGEEGLDIQTCCLVIRYDLPETVTSFIQSRGRARMPQSEYAFLVDSGNEKEMD 609
Query: 413 L 413
L
Sbjct: 610 L 610
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.318 0.132 0.384
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 497,423,696
Number of Sequences: 539616
Number of extensions: 20581965
Number of successful extensions: 63734
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 37
Number of HSP's successfully gapped in prelim test: 115
Number of HSP's that attempted gapping in prelim test: 63470
Number of HSP's gapped (non-prelim): 362
length of query: 1402
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1272
effective length of database: 121,419,379
effective search space: 154445450088
effective search space used: 154445450088
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 68 (30.8 bits)