BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000593
(1402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1BKN|A Chain A, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
pdb|1BKN|B Chain B, Crystal Structure Of An N-Terminal 40kd Fragment Of E.
Coli Dna Mismatch Repair Protein Mutl
Length = 352
Score = 129 bits (324), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 106/358 (29%), Positives = 175/358 (48%), Gaps = 33/358 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 6 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 65
Query: 63 ISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPN 122
I +D L L RHATSK +A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 66 IKKDELALALARHATSK---IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 122
Query: 123 GYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLR 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + + R
Sbjct: 123 AWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIRR 180
Query: 183 IALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGAL 238
IAL V+ I++ +++ G I +FL++ A G L
Sbjct: 181 IALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDL 237
Query: 239 EISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 297
+ G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 238 TLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ---- 288
Query: 298 KRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 354
PA++L L PH + D+ P K V F V FI + + S +++
Sbjct: 289 --------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL 337
>pdb|1B63|A Chain A, Mutl Complexed With Adpnp
pdb|1NHH|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl Protein (Ln40)
Complex With Adpnp And One Rubidium
pdb|1NHI|A Chain A, Crystal Structure Of N-Terminal 40kd Mutl (Ln40) Complex
With Adpnp And One Potassium
Length = 333
Score = 126 bits (317), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 106/352 (30%), Positives = 172/352 (48%), Gaps = 33/352 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 63 ISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPN 122
I +D L L RHATSK +A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 65 IKKDELALALARHATSK---IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 121
Query: 123 GYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLR 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + + R
Sbjct: 122 AWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIRR 179
Query: 183 IALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGAL 238
IAL V+ I++ +++ G I +FL++ A G L
Sbjct: 180 IALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDL 236
Query: 239 EISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 297
+ G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 237 TLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ---- 287
Query: 298 KRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRS 348
PA++L L PH + D+ P K V F V FI + + S
Sbjct: 288 --------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLS 330
>pdb|1NHJ|A Chain A, Crystal Structure Of N-Terminal 40kd MutlA100P MUTANT
PROTEIN COMPLEX With Adpnp And One Sodium
Length = 333
Score = 124 bits (311), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 105/352 (29%), Positives = 171/352 (48%), Gaps = 33/352 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 5 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 64
Query: 63 ISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPN 122
I +D L L RHATSK +A +DD I + GFRGEAL SIS VS L + ++ +
Sbjct: 65 IKKDELALALARHATSK---IASLDDLEAIISLGFRGEALPSISSVSRLTLTSRTAEQQE 121
Query: 123 GYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLR 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + + R
Sbjct: 122 AWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIRR 179
Query: 183 IALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGAL 238
IAL V+ I++ +++ G I +FL++ A G L
Sbjct: 180 IALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDL 236
Query: 239 EISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 297
+ G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 237 TLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ---- 287
Query: 298 KRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRS 348
PA++L L PH + D+ P K V F V FI + + S
Sbjct: 288 --------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLS 330
>pdb|1B62|A Chain A, Mutl Complexed With Adp
Length = 355
Score = 124 bits (310), Expect = 5e-28, Method: Composition-based stats.
Identities = 106/358 (29%), Positives = 175/358 (48%), Gaps = 33/358 (9%)
Query: 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSG 62
I LP + N + +G V+ VV+ELV NS+DAGAT++ + + +++ D+G G
Sbjct: 9 IQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCG 68
Query: 63 ISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPN 122
I +D L L RHATSK +A +DD I + GFRGEALASIS VS L + ++ +
Sbjct: 69 IKKDELALALARHATSK---IASLDDLEAIISLGFRGEALASISSVSRLTLTSRTAEQQE 125
Query: 123 GYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLR 182
++ +G + + + + VGTT+ DLFYN P RRK++++ + H + + + R
Sbjct: 126 AWQAYAEG-RDMNVTVKPAAHPVGTTLEVLDLFYNTPARRKFLRTEKTEFNH-IDEIIRR 183
Query: 183 IALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFG-IEDFSFLDEVNA---NDGAL 238
IAL V+ I++ +++ G I +FL++ A G L
Sbjct: 184 IALARFDVT---INLSHNGKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHGDL 240
Query: 239 EISGYISSP-YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKG 297
+ G+++ P + + ++ QY Y+N R + +L+NH A C D A+
Sbjct: 241 TLRGWVADPNHTTPALAEIQYCYVNGRMMRD----RLINH-AIRQACEDKLGADQQ---- 291
Query: 298 KRSKSQACPAYLLNLRC-PHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 354
PA++L L PH + D+ P K V F V FI + + S +++
Sbjct: 292 --------PAFVLYLEIDPHQV-DVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQQQL 340
>pdb|3NA3|A Chain A, Mutl Protein Homolog 1 Isoform 1 From Homo Sapiens
Length = 348
Score = 95.5 bits (236), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 95/353 (26%), Positives = 153/353 (43%), Gaps = 26/353 (7%)
Query: 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDG 60
G I RL E V N + +G V+ ++E++ N +DA +T + V V +++ D+G
Sbjct: 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNG 66
Query: 61 SGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGR 120
+GI ++ L ++ ER TSKL +D I T+GFRGEALASIS V+ + I TK
Sbjct: 67 TGIRKEDLDIVCERFTTSKL---QSFEDLASISTYGFRGEALASISHVAHVTITTKTADG 123
Query: 121 PNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCV 180
YR K L + GT + DLFYN RRK ++ +P + + + V
Sbjct: 124 KCAYRASYSDGK-LKAPPKPCAGNQGTQITVEDLFYNIATRRKALK-NPSEEYGKILEVV 181
Query: 181 LRIALVHPKVSFKFIDMESEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNANDG--AL 238
R ++ + +SF + T FG L E+ D A
Sbjct: 182 GRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 241
Query: 239 EISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGK 298
+++GYIS+ S+ K ++IN R V + K + + A++ ++
Sbjct: 242 KMNGYISNANYSVK-KCIFLLFINHRLVESTSLRKAIETVYAAYLPKNTH---------- 290
Query: 299 RSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351
P L+L D+ P K V F E +L +++ I S +
Sbjct: 291 -------PFLYLSLEISPQNVDVNVHPTKHEVHFLHEESILERVQQHIESKLL 336
>pdb|3H4L|A Chain A, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
pdb|3H4L|B Chain B, Crystal Structure Of N Terminal Domain Of A Dna Repair
Prote
Length = 367
Score = 87.0 bits (214), Expect = 6e-17, Method: Compositional matrix adjust.
Identities = 91/382 (23%), Positives = 155/382 (40%), Gaps = 52/382 (13%)
Query: 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKV-FVYVGVCNCYVKVVDD 59
M I+++ + + + SG V+ DLT V+ELV NS+DA A ++ ++ ++ D+
Sbjct: 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDN 62
Query: 60 GSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHG 119
G GI L +H TSK +A D + T GFRGEAL+S+ ++ L +IT
Sbjct: 63 GDGIDPSNYEFLALKHYTSK---IAKFQDVAKVQTLGFRGEALSSLCGIAKLSVITTTS- 118
Query: 120 RPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKC 179
P K+ ++ GTTV+ LF+N PVR+K + K+
Sbjct: 119 -PPKADKLEYDMVGHITSKTTTSRNKGTTVLVSQLFHNLPVRQKEFSKTFKRQFTKCLTV 177
Query: 180 VLRIALVHPKVSFKFIDME---SEDELLCTCXXXXXXXXXXXXFGIEDFSFLDEVNAN-- 234
+ A+++ + F ++ ++ +L T FG L+EV+
Sbjct: 178 IQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVLD 237
Query: 235 ---------------------DGALEISGYISSPYDSI--SVKAFQYVYINSRYVCKGPI 271
D + + GYIS + K Q++Y+N R V +
Sbjct: 238 LNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTL 297
Query: 272 HKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVV 331
K N + +F+ N F PA LNL P SL D+ P K ++
Sbjct: 298 LKCCNEVYKTFN-------NVQF-----------PAVFLNLELPMSLIDVNVTPDKRVIL 339
Query: 332 FKDWEPVLAFIERAIRSAWMKK 353
+ V+ + + + ++
Sbjct: 340 LHNERAVIDIFKTTLSDYYNRQ 361
>pdb|1EA6|A Chain A, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
pdb|1EA6|B Chain B, N-Terminal 40kda Fragment Of Nhpms2 Complexed With Adp
Length = 364
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVD--LIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKC 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T H ++M
Sbjct: 86 KHHTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTIST-CHASAKVGTRLMFDHNG 141
Query: 134 LYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 171
+ + GTTV + LF PVR K Q + KK
Sbjct: 142 KIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|1H7U|A Chain A, Hpms2-atpgs
pdb|1H7U|B Chain B, Hpms2-atpgs
Length = 365
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 57/158 (36%), Positives = 83/158 (52%), Gaps = 9/158 (5%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVD--LIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKC 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T H ++M
Sbjct: 86 KHHTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTIST-CHASAKVGTRLMFDHNG 141
Query: 134 LYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 171
+ + GTTV + LF PVR K Q + KK
Sbjct: 142 KIIQKTPYPRPRGTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|1H7S|A Chain A, N-Terminal 40kda Fragment Of Human Pms2
pdb|1H7S|B Chain B, N-Terminal 40kda Fragment Of Human Pms2
Length = 365
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 58/158 (36%), Positives = 82/158 (51%), Gaps = 9/158 (5%)
Query: 17 SGTVLFDLTRVVEELVFNSVDAGATKVFVYV---GVCNCYVKVVDDGSGISRDGLVLLGE 73
SG V+ L+ V+ELV NS+DAGAT + + + GV ++V D+G G+ + L
Sbjct: 28 SGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVD--LIEVSDNGCGVEEENFEGLTL 85
Query: 74 RHATSKLGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKC 133
+H TSK+ AD+ T + TFGFRGEAL+S+ +S + I T G R +
Sbjct: 86 KHHTSKIQEFADL---TQVETFGFRGEALSSLCALSDVTISTCHASAKVGTRLXFDHNGK 142
Query: 134 LYLGIDDERKDVGTTVVSRDLFYNQPVRRKYMQSSPKK 171
+ R GTTV + LF PVR K Q + KK
Sbjct: 143 IIQKTPYPRPR-GTTVSVQQLFSTLPVRHKEFQRNIKK 179
>pdb|3NCV|A Chain A, Ngol
pdb|3NCV|B Chain B, Ngol
Length = 220
Score = 52.0 bits (123), Expect = 2e-06, Method: Composition-based stats.
Identities = 53/187 (28%), Positives = 83/187 (44%), Gaps = 22/187 (11%)
Query: 1176 FIPVVAGGTLAVIDQHAADERIRLEEL-RHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQ 1234
+I A +L +ID HAA ER+ E++ R + +G +S Q L++P
Sbjct: 40 YILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQS-------QHLLIP-------V 85
Query: 1235 NFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLL--EF 1292
FA ++ + + H + F L L + + A P + G SDV L +
Sbjct: 86 TFAASHEECAALAD-HAETLAGFG--LELSDMGGNTLAVRAAPVMLGK--SDVVSLARDV 140
Query: 1293 LQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHG 1352
L +LA S T R+L + +C G+I G L E ++ +++ T QC HG
Sbjct: 141 LGELAQVGSSQTIASHENRILATMSCHGSIRAGRRLTLPEMNALLRDMENTPRSNQCNHG 200
Query: 1353 RPTTVPL 1359
RPT V L
Sbjct: 201 RPTWVKL 207
>pdb|4E4W|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer
Length = 239
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 1132 IHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGT----LAV 1187
I N+D + D G +LT +++K+ + +V+ Q + FI V L +
Sbjct: 12 IKNKDELEDFEQGEKYLTL------TVSKNDFKKMEVVGQFNLGFIIVTRKVDNKYDLFI 65
Query: 1188 IDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWIC 1247
+DQHA+DE+ E L ++V + Q+L++P+ +L I + +
Sbjct: 66 VDQHASDEKYNFETL---------QAVTVFKS-QKLIIPQ-PVEL-----SVIDELVVLD 109
Query: 1248 NIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDG---SST 1304
N+ F ++ + + + LL++P D E + + + G +
Sbjct: 110 NLPVFEKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNI 169
Query: 1305 TPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNL 1362
+ + +ACR +IM G L +V L + + C HGRPT L+ L
Sbjct: 170 RCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMEL 227
>pdb|4FMN|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Ntg2
pdb|4FMO|B Chain B, Structure Of The C-terminal Domain Of The Saccharomyces
Cerevisiae Mutl Alpha (mlh1/pms1) Heterodimer Bound To A
Fragment Of Exo1
Length = 240
Score = 44.3 bits (103), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/238 (22%), Positives = 98/238 (41%), Gaps = 29/238 (12%)
Query: 1132 IHNQDNILDISSGLLHLTGEFFIPDSINKSCLEDAKVLQQVDKKFIPVVAGGT----LAV 1187
I N+D + D G +LT +++K+ + +V+ Q + FI V L +
Sbjct: 13 IKNKDELEDFEQGEKYLTL------TVSKNDFKKMEVVGQFNLGFIIVTRKVDNKYDLFI 66
Query: 1188 IDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWIC 1247
+DQHA+DE+ E L ++V + Q+L++P+ +L I + +
Sbjct: 67 VDQHASDEKYNFETL---------QAVTVFKS-QKLIIPQ-PVEL-----SVIDELVVLD 110
Query: 1248 NIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDG---SST 1304
N+ F ++ + + + LL++P D E + + + G +
Sbjct: 111 NLPVFEKNGFKLKIDEEEEFGSRVKLLSLPTSKQTLFDLGDFNELIHLIKEDGGLRRDNI 170
Query: 1305 TPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNL 1362
+ + +ACR +IM G L +V L + + C HGRPT L+ L
Sbjct: 171 RCSKIRSMFAMRACRSSIMIGKPLNKKTMTRVVHNLSELDKPWNCPHGRPTMRHLMEL 228
>pdb|3GAB|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|C Chain C, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3GAB|D Chain D, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form I
pdb|3KDG|A Chain A, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form Ii
pdb|3KDG|B Chain B, C-Terminal Domain Of Bacillus Subtilis Mutl Crystal Form Ii
pdb|3KDK|A Chain A, Structure Of The C-Terminal Domain Of Bacillus Subtilis Mutl
Bound To Zn2+
pdb|3KDK|B Chain B, Structure Of The C-Terminal Domain Of Bacillus Subtilis Mutl
Bound To Zn2+
Length = 197
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 49/194 (25%), Positives = 77/194 (39%), Gaps = 28/194 (14%)
Query: 1169 LQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEI 1228
+ Q+ +I L +IDQHAA ERI+ E R KV E + QE+++P +
Sbjct: 12 IGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEV-------QEMIVP-L 63
Query: 1229 GYQLLQNFAEQIKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVD 1288
+ N A I H Q S L ++ P F
Sbjct: 64 TFHYSTNEA-------LIIEQHKQELESVGVFLESFGSNSYIVR--CHPAWFPKGEEAEL 114
Query: 1289 LLEFLQQLADTDGSSTTPPSVLRVLNSKA-----CRGAIMFGDSLLPSECALIVEELKQT 1343
+ E +QQ+ D+ ++ L +A C+G+I L E ++++L+ T
Sbjct: 115 IEEIIQQVLDSKNID------IKKLREEAAIMMSCKGSIKANRHLRNDEIKALLDDLRST 168
Query: 1344 SLCFQCAHGRPTTV 1357
S F C HGRP +
Sbjct: 169 SDPFTCPHGRPIII 182
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 42,000,577
Number of Sequences: 62578
Number of extensions: 1787244
Number of successful extensions: 4005
Number of sequences better than 100.0: 14
Number of HSP's better than 100.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 3960
Number of HSP's gapped (non-prelim): 17
length of query: 1402
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1291
effective length of database: 8,027,179
effective search space: 10363088089
effective search space used: 10363088089
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)