Query 000593
Match_columns 1402
No_of_seqs 429 out of 2707
Neff 4.4
Searched_HMMs 46136
Date Mon Apr 1 20:17:25 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000593.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000593hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1977 DNA mismatch repair pr 100.0 3E-128 6E-133 1120.1 37.7 1117 3-1399 1-1140(1142)
2 COG0323 MutL DNA mismatch repa 100.0 1.4E-95 3E-100 886.9 57.9 334 1-356 1-336 (638)
3 PRK00095 mutL DNA mismatch rep 100.0 5.6E-89 1.2E-93 829.6 61.2 324 3-351 2-326 (617)
4 KOG1978 DNA mismatch repair pr 100.0 1.2E-76 2.6E-81 701.3 39.5 311 4-351 1-318 (672)
5 KOG1979 DNA mismatch repair pr 100.0 8.8E-62 1.9E-66 562.4 23.7 339 1-362 5-348 (694)
6 TIGR00585 mutl DNA mismatch re 100.0 1.4E-56 3E-61 506.4 30.4 305 2-331 1-312 (312)
7 PF08676 MutL_C: MutL C termin 99.9 1E-27 2.2E-32 242.6 14.5 143 1165-1328 2-144 (144)
8 PRK14867 DNA topoisomerase VI 99.9 2.3E-24 5E-29 262.2 22.5 246 23-317 36-307 (659)
9 PF01119 DNA_mis_repair: DNA m 99.9 5.2E-23 1.1E-27 203.8 12.2 119 216-351 1-119 (119)
10 cd03485 MutL_Trans_hPMS_1_like 99.9 2.9E-22 6.3E-27 202.1 14.3 125 212-350 2-131 (132)
11 cd03482 MutL_Trans_MutL MutL_T 99.9 2E-22 4.4E-27 201.4 12.8 122 213-351 2-123 (123)
12 cd03483 MutL_Trans_MLH1 MutL_T 99.9 2.5E-22 5.4E-27 201.7 12.8 122 212-351 2-127 (127)
13 cd03486 MutL_Trans_MLH3 MutL_T 99.9 3.2E-22 6.9E-27 204.1 13.6 135 212-351 2-141 (141)
14 cd00782 MutL_Trans MutL_Trans: 99.9 9.8E-22 2.1E-26 194.2 12.5 121 213-350 2-122 (122)
15 smart00853 MutL_C MutL C termi 99.9 4.9E-21 1.1E-25 191.6 17.0 134 1166-1317 2-136 (136)
16 PRK14868 DNA topoisomerase VI 99.9 9.7E-22 2.1E-26 239.9 13.8 202 23-250 46-272 (795)
17 cd03484 MutL_Trans_hPMS_2_like 99.8 7.3E-21 1.6E-25 194.6 13.6 122 212-351 2-142 (142)
18 smart00433 TOP2c Topoisomerase 99.8 4.4E-20 9.5E-25 225.8 21.9 300 24-353 2-329 (594)
19 TIGR01055 parE_Gneg DNA topois 99.8 1.8E-19 3.8E-24 221.3 25.4 319 4-352 9-359 (625)
20 TIGR01059 gyrB DNA gyrase, B s 99.8 1.6E-18 3.5E-23 214.3 28.6 321 3-353 5-360 (654)
21 PRK05559 DNA topoisomerase IV 99.8 2E-18 4.3E-23 212.5 25.8 318 4-353 13-365 (631)
22 PRK05644 gyrB DNA gyrase subun 99.8 2.3E-18 5E-23 212.0 26.2 243 4-268 13-280 (638)
23 PRK14939 gyrB DNA gyrase subun 99.8 3.3E-18 7.1E-23 212.4 18.9 242 4-268 12-278 (756)
24 PRK05218 heat shock protein 90 99.8 1.1E-17 2.3E-22 205.6 21.8 235 11-269 15-298 (613)
25 TIGR01052 top6b DNA topoisomer 99.8 2.7E-18 5.9E-23 204.6 15.3 159 21-198 26-205 (488)
26 PRK04184 DNA topoisomerase VI 99.6 2.7E-15 6E-20 180.8 17.4 154 24-197 37-213 (535)
27 cd00329 TopoII_MutL_Trans MutL 99.5 1.2E-13 2.6E-18 131.2 10.1 105 213-331 2-107 (107)
28 PF13589 HATPase_c_3: Histidin 99.4 2.9E-13 6.3E-18 137.4 3.5 100 23-129 2-106 (137)
29 COG1389 DNA topoisomerase VI, 99.3 5.6E-12 1.2E-16 146.9 13.5 165 20-198 33-214 (538)
30 TIGR01058 parE_Gpos DNA topois 99.3 1.1E-10 2.3E-15 144.8 21.2 244 3-268 9-275 (637)
31 PRK14083 HSP90 family protein; 99.2 7.7E-11 1.7E-15 145.1 15.3 239 11-268 12-277 (601)
32 COG0187 GyrB Type IIA topoisom 99.1 7.9E-10 1.7E-14 134.1 15.9 318 4-353 11-365 (635)
33 COG0326 HtpG Molecular chapero 98.9 1.9E-08 4.2E-13 122.8 17.1 236 18-268 22-305 (623)
34 PTZ00109 DNA gyrase subunit b; 98.9 8.8E-09 1.9E-13 129.9 13.9 228 22-267 128-434 (903)
35 PTZ00108 DNA topoisomerase 2-l 98.8 9.2E-08 2E-12 125.9 20.8 166 19-196 53-240 (1388)
36 PTZ00130 heat shock protein 90 98.8 9E-09 1.9E-13 129.3 9.9 159 17-186 82-263 (814)
37 PTZ00272 heat shock protein 83 98.8 8.1E-09 1.8E-13 129.1 9.1 159 17-186 19-198 (701)
38 PHA02569 39 DNA topoisomerase 98.8 1.5E-08 3.2E-13 125.5 8.6 160 21-197 43-223 (602)
39 PLN03128 DNA topoisomerase 2; 98.7 1.5E-07 3.2E-12 122.8 16.9 166 19-196 48-233 (1135)
40 PLN03237 DNA topoisomerase 2; 98.6 2.5E-07 5.4E-12 121.7 12.3 166 20-197 74-259 (1465)
41 PF02518 HATPase_c: Histidine 98.4 1.2E-06 2.5E-11 84.6 8.0 78 22-109 4-85 (111)
42 KOG0019 Molecular chaperone (H 97.8 4.4E-05 9.6E-10 93.0 9.2 164 4-185 43-226 (656)
43 TIGR02938 nifL_nitrog nitrogen 97.8 4.3E-05 9.2E-10 89.2 8.4 73 24-108 388-468 (494)
44 COG3290 CitA Signal transducti 97.8 3.9E-05 8.5E-10 93.1 6.9 81 14-108 418-505 (537)
45 PRK11006 phoR phosphate regulo 97.7 0.00012 2.6E-09 86.5 9.9 77 23-108 317-397 (430)
46 PRK10604 sensor protein RstB; 97.7 0.0001 2.2E-09 87.7 9.1 56 24-79 320-377 (433)
47 PRK15053 dpiB sensor histidine 97.6 0.00013 2.8E-09 88.4 9.0 74 23-108 432-513 (545)
48 PRK10364 sensor protein ZraS; 97.6 0.00017 3.6E-09 85.9 9.4 71 23-108 348-422 (457)
49 PRK09303 adaptive-response sen 97.6 0.00015 3.2E-09 85.2 8.6 57 24-80 273-334 (380)
50 PRK10549 signal transduction h 97.6 0.00021 4.6E-09 84.3 9.2 77 24-109 353-433 (466)
51 COG4191 Signal transduction hi 97.6 0.0001 2.3E-09 90.2 6.6 59 22-80 496-560 (603)
52 PRK11100 sensory histidine kin 97.4 0.00048 1E-08 80.8 9.8 75 24-108 369-447 (475)
53 PRK11086 sensory histidine kin 97.4 0.00034 7.4E-09 83.9 8.6 57 23-79 433-495 (542)
54 TIGR01386 cztS_silS_copS heavy 97.4 0.0006 1.3E-08 79.8 10.4 76 24-108 354-433 (457)
55 cd00075 HATPase_c Histidine ki 97.4 0.00095 2.1E-08 60.4 8.9 51 25-75 2-57 (103)
56 KOG0020 Endoplasmic reticulum 97.3 0.00068 1.5E-08 80.9 9.5 147 25-185 97-272 (785)
57 PRK09470 cpxA two-component se 97.3 0.00076 1.6E-08 79.3 10.1 56 24-79 354-411 (461)
58 COG0642 BaeS Signal transducti 97.3 0.00045 9.7E-09 74.9 7.5 59 23-81 228-289 (336)
59 PRK09467 envZ osmolarity senso 97.2 0.00096 2.1E-08 78.3 9.5 55 24-78 332-388 (435)
60 PRK10815 sensor protein PhoQ; 97.2 0.0011 2.3E-08 80.9 9.4 55 24-78 379-435 (485)
61 TIGR02916 PEP_his_kin putative 97.2 0.001 2.2E-08 84.0 9.0 70 24-108 580-654 (679)
62 PRK15347 two component system 97.1 0.0016 3.4E-08 84.0 10.5 56 24-79 514-572 (921)
63 PRK10337 sensor protein QseC; 97.1 0.0013 2.9E-08 77.6 8.9 54 24-79 353-408 (449)
64 PRK10755 sensor protein BasS/P 97.1 0.0021 4.5E-08 73.9 10.0 55 24-78 248-306 (356)
65 TIGR02966 phoR_proteo phosphat 97.1 0.0021 4.7E-08 71.2 9.6 56 24-79 230-289 (333)
66 smart00387 HATPase_c Histidine 97.0 0.0066 1.4E-07 55.8 10.9 57 23-79 5-65 (111)
67 PRK11091 aerobic respiration c 97.0 0.0026 5.6E-08 81.2 10.5 87 23-117 398-493 (779)
68 PRK11360 sensory histidine kin 97.0 0.0017 3.6E-08 77.8 8.3 56 24-79 501-561 (607)
69 TIGR01925 spIIAB anti-sigma F 97.0 0.0039 8.3E-08 62.8 9.4 57 21-79 37-100 (137)
70 PRK10618 phosphotransfer inter 96.7 0.0064 1.4E-07 79.7 10.8 58 23-80 565-628 (894)
71 PRK11073 glnL nitrogen regulat 96.7 0.0074 1.6E-07 68.8 9.8 56 24-79 238-308 (348)
72 PRK13557 histidine kinase; Pro 96.7 0.0055 1.2E-07 73.3 9.1 56 24-79 278-352 (540)
73 PRK10490 sensor protein KdpD; 96.6 0.0053 1.1E-07 80.4 9.5 57 24-80 779-839 (895)
74 PRK11466 hybrid sensory histid 96.6 0.0049 1.1E-07 79.8 8.8 55 24-78 562-619 (914)
75 TIGR03785 marine_sort_HK prote 96.6 0.0076 1.6E-07 77.0 10.3 76 24-108 598-677 (703)
76 TIGR02956 TMAO_torS TMAO reduc 96.6 0.0064 1.4E-07 79.0 9.4 56 24-79 580-639 (968)
77 PRK13837 two-component VirA-li 96.5 0.01 2.2E-07 77.0 10.6 56 24-79 561-635 (828)
78 PRK09835 sensor kinase CusS; P 96.5 0.016 3.4E-07 69.0 11.1 57 24-80 376-436 (482)
79 PRK11107 hybrid sensory histid 96.4 0.01 2.2E-07 76.5 9.5 85 24-117 409-506 (919)
80 PRK09959 hybrid sensory histid 96.2 0.012 2.7E-07 78.5 9.4 58 23-80 828-893 (1197)
81 PRK04069 serine-protein kinase 96.1 0.016 3.4E-07 61.1 7.4 59 20-78 39-104 (161)
82 PRK10841 hybrid sensory kinase 96.0 0.044 9.6E-07 72.3 12.8 85 24-117 563-655 (924)
83 COG0643 CheA Chemotaxis protei 95.6 0.031 6.7E-07 71.7 8.6 49 21-69 430-494 (716)
84 PRK10547 chemotaxis protein Ch 95.3 0.063 1.4E-06 68.6 10.0 44 26-69 388-447 (670)
85 TIGR01924 rsbW_low_gc serine-p 95.2 0.076 1.6E-06 56.1 8.5 85 19-114 38-130 (159)
86 PRK03660 anti-sigma F factor; 95.2 0.13 2.7E-06 52.5 9.8 56 20-77 36-98 (146)
87 COG5000 NtrY Signal transducti 95.1 0.031 6.7E-07 69.4 5.9 58 24-81 601-669 (712)
88 COG3851 UhpB Signal transducti 95.0 0.076 1.6E-06 62.7 8.4 45 22-66 409-456 (497)
89 COG2205 KdpD Osmosensitive K+ 94.7 0.059 1.3E-06 69.0 7.1 55 24-78 776-834 (890)
90 COG3852 NtrB Signal transducti 94.2 0.076 1.6E-06 61.8 6.1 58 24-81 242-317 (363)
91 COG5002 VicK Signal transducti 94.1 0.075 1.6E-06 62.7 5.9 74 24-106 343-420 (459)
92 PRK11644 sensory histidine kin 93.7 0.071 1.5E-06 65.6 5.1 43 24-66 411-456 (495)
93 PF13581 HATPase_c_2: Histidin 93.7 0.17 3.6E-06 50.2 6.7 78 20-113 28-113 (125)
94 COG4192 Signal transduction hi 93.3 0.12 2.7E-06 62.5 5.8 60 22-81 563-628 (673)
95 PRK10600 nitrate/nitrite senso 93.2 0.1 2.3E-06 64.6 5.3 43 24-66 470-515 (569)
96 COG3850 NarQ Signal transducti 92.8 0.12 2.6E-06 63.7 4.9 43 24-66 482-527 (574)
97 COG4585 Signal transduction hi 92.6 0.15 3.2E-06 59.9 5.2 45 22-66 278-325 (365)
98 COG2972 Predicted signal trans 92.3 0.33 7.2E-06 59.3 7.8 51 21-71 348-406 (456)
99 KOG0355 DNA topoisomerase type 91.4 0.37 8E-06 62.0 7.0 63 19-81 49-124 (842)
100 PRK13560 hypothetical protein; 90.8 0.25 5.5E-06 62.4 4.9 43 24-66 712-762 (807)
101 KOG0787 Dehydrogenase kinase [ 88.1 1.3 2.8E-05 53.1 7.5 54 22-75 259-324 (414)
102 PRK10935 nitrate/nitrite senso 87.3 0.69 1.5E-05 56.7 5.0 42 24-65 472-517 (565)
103 COG2172 RsbW Anti-sigma regula 86.7 2.6 5.7E-05 44.6 8.2 55 19-75 36-98 (146)
104 PRK13559 hypothetical protein; 85.0 1 2.2E-05 52.1 4.6 44 23-66 267-319 (361)
105 COG4251 Bacteriophytochrome (l 81.7 5.4 0.00012 50.9 9.0 50 24-73 637-691 (750)
106 COG3275 LytS Putative regulato 81.3 1.5 3.2E-05 54.0 4.1 43 24-66 457-507 (557)
107 COG3920 Signal transduction hi 80.8 1.7 3.6E-05 48.8 4.1 45 22-66 121-174 (221)
108 COG4564 Signal transduction hi 72.1 4.3 9.3E-05 48.3 4.3 47 21-67 357-406 (459)
109 KOG1979 DNA mismatch repair pr 60.5 61 0.0013 41.5 11.0 50 1158-1207 465-514 (694)
110 PF02742 Fe_dep_repr_C: Iron d 50.7 9.8 0.00021 35.4 1.8 38 1316-1356 32-69 (71)
111 COG1321 TroR Mn-dependent tran 35.0 31 0.00068 37.1 2.9 38 1315-1355 95-132 (154)
112 PF14501 HATPase_c_5: GHKL dom 22.9 1.3E+02 0.0027 29.3 4.5 37 23-59 5-48 (100)
No 1
>KOG1977 consensus DNA mismatch repair protein - MLH3 family [Replication, recombination and repair]
Probab=100.00 E-value=2.7e-128 Score=1120.06 Aligned_cols=1117 Identities=22% Similarity=0.211 Sum_probs=912.2
Q ss_pred CcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCC
Q 000593 3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGH 82 (1402)
Q Consensus 3 ~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s 82 (1402)
+|++||.+|..+++||..|.++++||+|||.|||||+||.|.|.|+...+.+.|.|||.||..+||.+++.||+|||++.
T Consensus 1 ~Ik~L~~~V~~~lrSg~~~~sla~~VeElv~NSiDA~At~V~v~V~~~t~sv~ViDdG~G~~rdDl~~lg~ry~TSK~h~ 80 (1142)
T KOG1977|consen 1 MIKCLSVEVQAKLRSGLAISSLAQCVEELVLNSIDAEATCVAVRVNMETFSVQVIDDGFGMGRDDLEKLGNRYFTSKCHS 80 (1142)
T ss_pred CccccchhHHHHHhccchHHHHHHHHHHHHhhccccCceEEEEEecCceeEEEEEecCCCccHHHHHHHHhhhhhhhcee
Confidence 49999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred cccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEE--EEEeCceeeeeccccCCCCCceEEEEcccccChhH
Q 000593 83 LADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYR--KVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPV 160 (1402)
Q Consensus 83 ~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~--i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlPV 160 (1402)
.+|+.+. .||||||||||||+.+|.+.++|+..+.+.+|. +...|.++...+++..+...||||+|+||||++||
T Consensus 81 ~ndl~~~---~tyGfRGeALasIsd~s~l~v~skkk~r~~~~~~kk~~~gs~~~~l~iD~~R~~sGTtVtV~dlfY~lPV 157 (1142)
T KOG1977|consen 81 VNDLENP---RTYGFRGEALASISDMSSLVVISKKKNRTMKTFVKKFQSGSALKALEIDVTRASSGTTVTVYDLFYQLPV 157 (1142)
T ss_pred ccccccc---cccccchhhhhhhhhhhhhhhhhhhcCCchhHHHHHHhccccceecccccccccCCcEEEeHHhhhcchh
Confidence 8898763 799999999999999999999999999998887 56677777777888888999999999999999999
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCCcEEE
Q 000593 161 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEI 240 (1402)
Q Consensus 161 RRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~~~kI 240 (1402)
|||+....++++++.|++.+.++||+||.|+|+|.++.++..++++.++....+.+..--|.+..++
T Consensus 158 RRr~k~~~P~k~fe~Ik~~i~~i~lmHp~iSfsv~~~~s~~~~lq~n~s~~~~eilfr~k~~e~~~s------------- 224 (1142)
T KOG1977|consen 158 RRRLKCMDPRKEFEKIKQRIEAISLMHPSISFSVRNDVSGSMVLQLNKSQKLREILFRYKEFELSSS------------- 224 (1142)
T ss_pred hhhhhcCCHHHHHHHHHHHHHHHHhhccceeEEEEeccCcceeeecCccchhhhhhhhhcccccccc-------------
Confidence 9998888899999999999999999999999999999888999999887776666554433332211
Q ss_pred EEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCCCccc
Q 000593 241 SGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYD 320 (1402)
Q Consensus 241 eGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VD 320 (1402)
. ..-++..+|+|||||.+.....++.+..+.+ + .+..-.|-|||+|.||..+||
T Consensus 225 ------~--~~~N~t~g~l~v~~~~~~~~~kh~~~~q~lR--~----------------~~~~~~P~yvi~v~cp~~ly~ 278 (1142)
T KOG1977|consen 225 ------E--AHYNKTMGFLFVNKRLVLRTKKHKLIDQLLR--K----------------ESIICKPKYVINVQCPFCLYD 278 (1142)
T ss_pred ------h--hccccccceeeecchhhhccchhhHHHHHHH--h----------------hheeccCcceeecccchhhhh
Confidence 1 1123567999999999998888888876532 1 112346889999999999999
Q ss_pred ccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchhhhccccCCCccccccccCCCccccccccchhhhhcccc
Q 000593 321 LTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVDMLEDAELPLESSRFQSHQSSTHLHSSPLKNLAKQRDHM 400 (1402)
Q Consensus 321 VNVhPaKtEV~F~dE~~Il~lI~kaIksfL~~~~a~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~ 400 (1402)
|..+|+|+.|.|++|+.|+.+|.+.+..||++......++.+ .+.+..+.+|. .++|.+.
T Consensus 279 vs~epakt~ieF~~w~~~l~~I~~~~~~~~kkd~~f~~~~G~-----~~~lad~~~Q~-----~vds~~r---------- 338 (1142)
T KOG1977|consen 279 VSMEPAKTLIEFQNWDTLLFCIQEGVKMFLKKDKLFVELSGE-----GFSLADATLQK-----RVDSDER---------- 338 (1142)
T ss_pred hhcCcccchhhhhcchhhHhHHHHhhhhhhhcceeEEEecCc-----ccccchhhhhh-----hcchhhh----------
Confidence 999999999999999999999999999999999888877764 12223333332 1111111
Q ss_pred ccccccccccccccCCchhhhhhccccccccCCCCCCccccCcccccCCCCCCCcccceeeccccccccCCCCccccCch
Q 000593 401 FHKECERITFQEFQKDPVELAEENTEMEFFSQPKHSSSLLDGSFAECLPIVPPKIDHRVWTIESSWFQDHQPSRHLFSPP 480 (1402)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (1402)
..|||.-..-+.+ -+| |. ..+.+.
T Consensus 339 -------~~~~~~~~~i~~~----~~~---------------------------------------~~------~~~~~~ 362 (1142)
T KOG1977|consen 339 -------SNFQEACNNILDS----YEM---------------------------------------FN------LQSKAV 362 (1142)
T ss_pred -------hhhhhhhhhhhhh----hhh---------------------------------------hh------hhhhhh
Confidence 2222221111111 000 00 344667
Q ss_pred hhcccccCCccccccccccccccccCCchhhhhccccccccCCCCCccCcCCCCccccccCCcccccccccccccccccc
Q 000593 481 LENLKKEGDHLFRKECERITFGDAEKDPAELQEENTEMEYVPQPKYSFGLSDGSFAKCLPIVPWKIDRHAWTIESSRFQY 560 (1402)
Q Consensus 481 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 560 (1402)
..+++++++|.. .-..++..||..|+++|...+..| -|.-+.....++.+.+.|.-. |--
T Consensus 363 krk~~~~n~~~~--ss~lf~a~df~~~g~~l~~~ksvg--~p~~~~~~~~~~~kd~~~~~~----------------~~~ 422 (1142)
T KOG1977|consen 363 KRKTTAENVNTQ--SSRLFEATDFNTNGAFLYIYKSVG--PPHSKMTEPSLQNKDSSCSES----------------KML 422 (1142)
T ss_pred hhhhcccccCCc--hhccchhhccCCCCceEEeecccC--CCcccccccccCcccccccch----------------hhh
Confidence 789999999988 557888999999999999888777 111111111123333333211 111
Q ss_pred ccCCCCccCCccccccccCCcccchhhhhhcccccccCCchhhcccchh-hhccccccCCCcCCCCcccccccccccccc
Q 000593 561 HQSSPHLYSSPLENLSKEGDHLFREECERITFGEFEKHTPELKEENSKR-ELVSQPKYSSKLLDCPFAECLSPVLRKIDL 639 (1402)
Q Consensus 561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 639 (1402)
. .+.+ ....+.++.+..+||+ ++++.. ..++
T Consensus 423 ~--~eti-~~S~~~e~e~~~~~~~-------------------~~~~le~~~~~-------------------------- 454 (1142)
T KOG1977|consen 423 E--QETI-VASEAGENEKHKKSFL-------------------EHSSLENLSPF-------------------------- 454 (1142)
T ss_pred c--hhhh-hhcccccccccccccc-------------------ccccccccccc--------------------------
Confidence 1 1222 3444555566666654 233332 1222
Q ss_pred cCCccCCccccccccccchhhccCCCCCCcccccccccccCC-ccccccCCccCCCCCCCCCCCccccCcccccccccCc
Q 000593 640 HGWTSGNRFSLKGSYFLETCFLADGRSSIPVEGDLLNSQRGY-EYLQIEPGVSNGASGTASPLDKDEFSNEFEVSKDIKK 718 (1402)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 718 (1402)
...+..+++..|. ....+++.+|+++..+=. ++ .+|+++.||++.++|
T Consensus 455 --------dt~C~~e~~~~~q---~tt~~~~~~d~lkd~~i~nq~--------------------k~~kd~~evt~~~gk 503 (1142)
T KOG1977|consen 455 --------DTPCHFELEIWKQ---STTVNGMAADILKDNRIQNQP--------------------KRFKDATEVTTLWGK 503 (1142)
T ss_pred --------cCchhhhhhcccc---ccccccchhhhhcChhhhccc--------------------ccccchhhhhhhHHH
Confidence 2344556788888 889999999999987722 44 899999999999999
Q ss_pred ccccccccCCCCCCCCCCccCCcccccccccccccccccccccccccchhhhhcccCCccCCCCCCCCCcc----ccccc
Q 000593 719 PLRLSCFSQGSPPLGGPLFSGGEERCESSTGCFKYKRKRKRVCYDKRMDILEADFSNQSFDSFSRTPLQDE----ASCSQ 794 (1402)
Q Consensus 719 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~ 794 (1402)
++++.|+++.+..+++|.+++ ..++|...++|++.++...+..+-+-- .--.+..--|--++.+|||+ +.|++
T Consensus 504 h~~~~c~~r~~~s~~~p~isH-V~~~e~~ep~i~n~~~~~~R~~eTf~g--~t~~s~~TPD~s~~as~~d~~~~~~nCst 580 (1142)
T KOG1977|consen 504 HSAQTCGRRNVFSYSTPFISH-VVQNEETEPSIKNYVRGPTRAQETFGG--RTRHSVETPDISDLASTLDQLPNKKNCST 580 (1142)
T ss_pred HHhhhccccceeeccCCccee-eeccccccccccccccCCchhhhhccC--cccccccCCCccccccccccCcccccccc
Confidence 999999999999999999999 999999999999877765544331100 00011233344558999998 78984
Q ss_pred cCcccccccccccccccccccccccCCCCCCCccccccCCCCCcccccCccccccccccccccccCCCCCCCCCcCCCcc
Q 000593 795 HLPRLSTAGDITAGFDLMSRASLNLFPSHAEPFTKETNFLSDSIEPVGNSVSDYKALNSVWCSKISDPFPQGASWNDGHF 874 (1402)
Q Consensus 795 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 874 (1402)
.. --+.+.+++...+...+. +.+|++..+..+++ +..++|+|..+..+|.++|.|+|+.| .+|.|.+++.
T Consensus 581 ~~----~~~~~~e~tat~p~~~v~-~dsrd~~igskk~i---~r~n~~sS~~Gs~~ls~q~~P~~~~~--~~t~~~sd~~ 650 (1142)
T KOG1977|consen 581 NI----SYGLENEPTATYPMFHVS-NDSRDKLIGSKKPI---VRKNLLSSQLGSLELSLQVEPDILLK--DTTMEHSDSD 650 (1142)
T ss_pred cc----cccccCCccccccchhcc-ccchhhhhccccce---eeeecchhhhcceeecccccccccCc--cccccccccc
Confidence 43 234677888887766554 45889999999996 67778999999999999999999998 7999999999
Q ss_pred ccccccccccccCCCCccCccccccc-ccccccccccccCccccccccccCCccccccCchhhhhhhcccCCCCCccCcC
Q 000593 875 IYNNALEGHSILGEGTSCGQLADTEE-NYKFDYDSKLRRSNQEKCTTARSGLRFEYYDNSSEDFCKYLQEHDPCNKFSRE 953 (1402)
Q Consensus 875 ~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 953 (1402)
.+|..++.++.+|+ +|...++.+.. |++|||+. .|.+.+|.| +..+|++..+|+..
T Consensus 651 ~gCri~~~~l~~ek-~p~~~~~~s~~nni~~D~e~---~~e~~~~~~--g~~Sr~~~klcs~~----------------- 707 (1142)
T KOG1977|consen 651 SGCRIASHILDSEK-FPFSKKELSLFNNIPLDLEK---SSEFNELPN--GDSSRKDSKLCSAT----------------- 707 (1142)
T ss_pred cccchhhhhccccc-CCCchhhhhhhcCccccccc---ccccccCcC--Cchhhhhhhhcccc-----------------
Confidence 99999999999999 99999999998 89999999 788999999 99999999999887
Q ss_pred CCCCCCCCccccccccc----ccccCCchhhhcccccCCCCCCCcccccccccCCCCCccccccccccccccccccCCC-
Q 000593 954 HSDVPFDKTDWLCSVLS----SIEYDNPETQRYKFRNHNCEPNPIHKELSRRSHSAPPFHRHKRRYISLNCCSVEAGKS- 1028 (1402)
Q Consensus 954 ~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 1028 (1402)
.|-.|.+++ ++..|+..|++.+|.|+...|++++|+|+.|+++||||||+++|||++.|.+..+.+.
T Consensus 708 --------~D~~f~~s~~h~~~~~td~~~ir~~~~~y~~~nq~~~gk~~~~~~ra~~~~~~~~k~fi~~~c~d~T~~qN~ 779 (1142)
T KOG1977|consen 708 --------QDNSFNKSKTHSNSNTTDNCVIRETPLVYPYNNQKVTGKDSDVLIRASEQSLDSPKGFIMNPCEDATGDQNG 779 (1142)
T ss_pred --------ccccccccccccCCeeecceeeeccceeeecccccccccccchhhhcCccccccccceEEeehhhccCCcCC
Confidence 455565555 6678899999999999999999999999999999999999999999999999999883
Q ss_pred -CCccccccCCCCcccccccccccccccccccCCC-CccCCCCchhhhhhccch------hhHhhhhhcccccccCcccc
Q 000593 1029 -NAHTLHCAKNSPEAGAFKHLQQSSGVCNANVKPS-SEEEDFRPDFKIESSTIL------DLEETHKAENFKLSLCPHAH 1100 (1402)
Q Consensus 1029 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~ 1100 (1402)
.+.+..| ...++.... |+.++. .+|+.| +.|........ ..|.|..++.-.+..+.|.+
T Consensus 780 ~cp~~~e~---~~~aC~et~---------~~~~c~~l~dv~y-~~m~ev~k~tf~A~dlk~~a~C~tV~vd~~~ed~~q~ 846 (1142)
T KOG1977|consen 780 ICPQSEES---KARACSETE---------ESNTCCRLFDVAY-GRMVEVNKMTFIAPDLKIQAACTTVAVDVVLEDRCQP 846 (1142)
T ss_pred CCcchhHh---hcccchhhh---------hhccchhHHHHHH-HHHHHhhhcceecccchhhccceEEEeeeehhhhhcc
Confidence 5566666 555555555 677777 555544 66665544221 55679999998888899999
Q ss_pred cccccccccccccccccCCCCCcccCCcccccccCCCcccccccccccccc-cccccccCcccccCceEeeeecCEEEEE
Q 000593 1101 LGAQAEGTSIISGTKWRNGHPQTTNNNISCDIHNQDNILDISSGLLHLTGE-FFIPDSINKSCLEDAKVLQQVDKKFIPV 1179 (1402)
Q Consensus 1101 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~dis~g~~~l~~~-~~v~~~Isk~~f~~~rVIGQvdkkFIL~ 1179 (1402)
+.|+..-.-|...++||..+.+-+++..+++.+.++-..+++.+..+++-+ +++|++|+|.++.+|+|+.|++++||.|
T Consensus 847 f~Se~~l~~lk~~~~wr~~~~~~~V~~ES~e~~~~e~~~~v~a~llev~~d~sl~p~~~nk~~i~~~qvlqqvDkkyi~~ 926 (1142)
T KOG1977|consen 847 FRSELVLPFLKRARAWRTVMVDDTVSSESLESLFSEWDNPVFARLLEVAVDVSLYPYRFNKGMIHSMQVLQQVDKKYIAC 926 (1142)
T ss_pred cchhhccccchhhhhhccccccccccHHhhhhhccccccchhhcchhhccchhhchhhhcccchhhHHHHHhhchhheee
Confidence 999977667788999999999999999999999999999999999997554 8999999999999999999999999999
Q ss_pred EeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcCcEEEEeccCcccccc
Q 000593 1180 VAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWGWICNIHTQGSRSFNK 1259 (1402)
Q Consensus 1180 e~~dgLyIIDQHAAHERIlyErL~k~~~~~~~~sq~lL~p~Q~LllP~~e~~LL~e~~e~LeklGFeiei~~~G~~sFG~ 1259 (1402)
..-+..-++|||||+||++.|.+..++... .+|+++.++.+-+.++++|..|.++++.|||++.+...+...|..
T Consensus 927 v~~~~~~~~~qha~dek~~~q~~~~k~l~~-----s~li~~l~~kvlpm~~~ll~~Y~~~~~d~gw~~~~~~~~~s~~~~ 1001 (1142)
T KOG1977|consen 927 VMSTKTEENGQHASDEKQQAQGSGRKKLLS-----STLIPPLEIKVLPMQRRLLWCYHKNLEDLGWEFVFPDTSDSLVLV 1001 (1142)
T ss_pred eeeccccccccchhHHHHHhhhhccccccc-----cccccceeEEechhhHHHHHHHHHHhhhhceEEecccccccceec
Confidence 999999999999999999999998876532 367777888777789999999999999999999988788778888
Q ss_pred ccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhccccccCCCCCHHHHHHHHHH
Q 000593 1260 NLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMFGDSLLPSECALIVEE 1339 (1402)
Q Consensus 1260 n~~i~~~~~~tI~IrsVP~iL~~~~~~~dl~ElL~eL~e~~g~~~~p~~i~elLAS~ACRsAIK~GD~LS~eEm~~LI~q 1339 (1402)
++.++.+.+..+...++|+++......+++.+++.+|+++.|++++|..+.++|+++|||+||||||.|++.||..||+.
T Consensus 1002 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~e~i~~~~el~~t~gsstlP~tv~kVLnSkACrgAImFgD~L~~qEc~~lI~~ 1081 (1142)
T KOG1977|consen 1002 GKVPLCFVEREANELRRGRSTVTKSIVEEFIREQLELLQTTGSSTLPLTVQKVLNSKACRGAIMFGDGLSLQECCRLIEA 1081 (1142)
T ss_pred cccceecccccchhhccccccccchhHHHHHHHHHHHhccCCCCccCHHHHHHHhhhhhhhceeeCCccCHHHHHHHHHH
Confidence 88888888888889999999998888888889999999999999999999999999999999999999999999999999
Q ss_pred HhcCCCCCCCCCCCcEEEECCChHHHHHHHHHhhhchHhhhhcccccchHHHHHHHhhhc
Q 000593 1340 LKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQLNNSSELWHGLHRGEISLKRASRRLLTG 1399 (1402)
Q Consensus 1340 L~~c~~Pf~CPHGRPTiv~L~sl~eL~K~F~rl~~~~~~w~~~~~~~~~~~~~~~~~~~~ 1399 (1402)
|..|.+||+|+||||+|+||+++.+|+||++.+ -.+..||++++.+..++||..|++.+
T Consensus 1082 Ls~c~lpFqCAHGRPsmvPladlk~l~kqi~~~-~~k~~~~~~~~r~~~~~~~~tr~~~~ 1140 (1142)
T KOG1977|consen 1082 LSSCQLPFQCAHGRPSMVPLADLKHLEKQIKPN-LTKLRKMAQAWRLFGKAECDTRQSLQ 1140 (1142)
T ss_pred HHhcCCchhhccCCCCccchhhHHHHHHHhhhh-hHHHHHHHHHHHHhhHhhhhhhhhhc
Confidence 999999999999999999999999999999998 56667999999999999999998754
No 2
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.4e-95 Score=886.93 Aligned_cols=334 Identities=33% Similarity=0.442 Sum_probs=303.9
Q ss_pred CCCcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEecCee-EEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCNC-YVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 1 M~~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~g~~-~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
|..|+.||+++++||+|||||++|++|||||||||||||||.|+|.|+.|+. .|+|.|||+||+++|++.++.||+|||
T Consensus 1 M~~Ir~L~~~l~nqIAAGEVIerPaSVVKELVENSlDAGAt~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la~~rHaTSK 80 (638)
T COG0323 1 MPKIRQLPPDLVNQIAAGEVIERPASVVKELVENSLDAGATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLALLRHATSK 80 (638)
T ss_pred CCcceeCCHHHHHHhcccceeecHHHHHHHHHhcccccCCCEEEEEEccCCccEEEEEECCCCCCHHHHHHHHhhhcccc
Confidence 7779999999999999999999999999999999999999999999987774 699999999999999999999999999
Q ss_pred CCCcccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEEEEEeCceeeeeccccCCCCCceEEEEcccccChh
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 159 (1402)
Q Consensus 80 i~s~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlP 159 (1402)
+.+++||.+ |.|||||||||+||++||+|+|+||+.+...||++.+.||.... .+.+...+.||||+|+|||||+|
T Consensus 81 I~~~~DL~~---I~TlGFRGEAL~SIasVsrlti~Srt~~~~~~~~~~~~g~~~~~-~~~p~a~~~GTtVeV~dLF~NtP 156 (638)
T COG0323 81 IASLEDLFR---IRTLGFRGEALASIASVSRLTITSRTAEASEGTQIYAEGGGMEV-TVKPAAHPVGTTVEVRDLFYNTP 156 (638)
T ss_pred CCchhHHHH---hhccCccHHHHHHHHhhheeEEEeecCCcCceEEEEecCCcccc-cccCCCCCCCCEEEehHhhccCh
Confidence 999999986 57999999999999999999999999998999999999886531 44566778899999999999999
Q ss_pred HHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCC-ceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCCcE
Q 000593 160 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGAL 238 (1402)
Q Consensus 160 VRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~-k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~~~ 238 (1402)
+|||+++ +.+.++.+|..+|++|||+||+|+|+|+++++. ..+..+.+.+....++..+||..+.+++.+++....++
T Consensus 157 aRrKflk-s~~~E~~~i~~vv~r~ALahp~I~F~l~~~gk~~~~~~~~~~~~~~~~ri~~i~G~~~~~~~l~i~~~~~~~ 235 (638)
T COG0323 157 ARRKFLK-SEKTEFGHITELINRYALAHPDISFSLSHNGKLRIELLKLPGTGDLEERIAAVYGTEFLKNALPIENEHEDL 235 (638)
T ss_pred HHHHhhc-ccHHHHHHHHHHHHHHHhcCCCeEEEEEECCceeeEEEecCCCCcHHHHHHHHhCHHHHHhhcccccCCCce
Confidence 9999886 478999999999999999999999999986431 15666777777777899999999999999999998999
Q ss_pred EEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCCCc
Q 000593 239 EISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSL 318 (1402)
Q Consensus 239 kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~ 318 (1402)
+|.||++.|...+.++++||+|||||+|.++.|.++|.+.| +..++ .++||+|||+|+|+|..
T Consensus 236 ~l~G~v~~P~~~r~~~~~q~~fVNgR~V~~~~l~~Ai~~aY---~~~L~--------------~~r~P~~vL~l~l~p~~ 298 (638)
T COG0323 236 RLSGYVSLPEFTRASRDYQYLFVNGRPVRDKLLNHALREAY---ADYLP--------------RGRYPVFVLFLELDPEL 298 (638)
T ss_pred EEEEEecccccccCCccceEEEECCCEeccHHHHHHHHHHH---Hhhcc--------------CCCCcEEEEEEeeChhh
Confidence 99999999988899999999999999999999988887754 44333 47899999999999999
Q ss_pred ccccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCC
Q 000593 319 YDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAH 356 (1402)
Q Consensus 319 VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~~~~a~ 356 (1402)
|||||||+|.+|+|+++..|.++|+++|..+|......
T Consensus 299 vDVNVHP~K~EVrf~~~~~i~~~I~~~I~~~L~~~~~~ 336 (638)
T COG0323 299 VDVNVHPAKKEVRFSDERLVHDLIYEAIKEALAQQGLI 336 (638)
T ss_pred cccccCCCcceEEecCHHHHHHHHHHHHHHHHHhcccC
Confidence 99999999999999999999999999999999887543
No 3
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Probab=100.00 E-value=5.6e-89 Score=829.60 Aligned_cols=324 Identities=34% Similarity=0.511 Sum_probs=295.6
Q ss_pred CcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEec-CeeEEEEEeCCCCCCHHHHHHhhccccCCCCC
Q 000593 3 TINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGV-CNCYVKVVDDGSGISRDGLVLLGERHATSKLG 81 (1402)
Q Consensus 3 ~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~-g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~ 81 (1402)
+|++||++|+++|+||+||++|++||+|||+||||||||.|.|.|.. |...|+|.|||+||+++++..++.+|+|||+.
T Consensus 2 ~I~~L~~~v~~~IaAgevI~~~~svvkElveNsiDAgat~I~v~i~~~g~~~i~V~DnG~Gi~~~~~~~~~~~~~tsKi~ 81 (617)
T PRK00095 2 PIQLLPPQLANQIAAGEVVERPASVVKELVENALDAGATRIDIEIEEGGLKLIRVRDNGCGISKEDLALALARHATSKIA 81 (617)
T ss_pred CceECCHHHHHHhcCcCcccCHHHHHHHHHHHHHhCCCCEEEEEEEeCCeEEEEEEEcCCCCCHHHHHHHhhccCCCCCC
Confidence 59999999999999999999999999999999999999999999954 44789999999999999999999999999999
Q ss_pred CcccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEEEEEeCceeeeeccccCCCCCceEEEEcccccChhHH
Q 000593 82 HLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPVR 161 (1402)
Q Consensus 82 s~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlPVR 161 (1402)
+++|+.. +.|+|||||||+||++||+|+|+||+.+...+|++.+.+|+.. ...+...++||+|+|+|||||+|||
T Consensus 82 ~~~dl~~---~~t~GfrGeAL~sI~~vs~l~i~s~~~~~~~~~~~~~~~G~~~--~~~~~~~~~GT~V~v~~LF~n~P~R 156 (617)
T PRK00095 82 SLDDLEA---IRTLGFRGEALPSIASVSRLTLTSRTADAAEGWQIVYEGGEIV--EVKPAAHPVGTTIEVRDLFFNTPAR 156 (617)
T ss_pred ChhHhhc---cccCCcchhHHHhhhhceEEEEEEecCCCCceEEEEecCCcCc--ceecccCCCCCEEEechhhccCcHH
Confidence 9999986 4799999999999999999999999988888999999988754 2334456899999999999999999
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCCcEEEE
Q 000593 162 RKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGALEIS 241 (1402)
Q Consensus 162 RK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~~~kIe 241 (1402)
||++++ .+.++..|++++++||++||+|+|+|.+. ++.++.+.+..++.+++..+||......+..++.+.++++|+
T Consensus 157 rkflk~-~~~e~~~i~~~v~~~Al~~p~i~f~l~~~--~~~~~~~~~~~~~~~~i~~i~g~~~~~~l~~~~~~~~~~~i~ 233 (617)
T PRK00095 157 RKFLKS-EKTELGHIDDVVNRLALAHPDVAFTLTHN--GKLVLQTRGAGQLLQRLAAILGREFAENALPIDAEHGDLRLS 233 (617)
T ss_pred HHhccC-cHHHHHHHHHHHHHHhhcCCCcEEEEEEC--CEEEEEeCCCCCHHHHHHHHhCHHhHhheEEEeccCCCEEEE
Confidence 999864 67899999999999999999999999984 356677777788999999999999888899999888899999
Q ss_pred EEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCCCcccc
Q 000593 242 GYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDL 321 (1402)
Q Consensus 242 GfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDV 321 (1402)
|||+.|...+.++..||+|||||+|.++.+.++|+.+|..+ .+ .++||+|+|+|+|||..|||
T Consensus 234 g~is~p~~~~~~~~~~~~fvN~R~v~~~~l~~ai~~~y~~~---~~--------------~~~~P~~~l~i~~~~~~~Dv 296 (617)
T PRK00095 234 GYVGLPTLSRANRDYQYLFVNGRYVRDKLLNHAIRQAYHDL---LP--------------RGRYPAFVLFLELDPHQVDV 296 (617)
T ss_pred EEEeCcccccCCCcceEEEECCcEecCHHHHHHHHHHHHHh---cc--------------CCCCcEEEEEEEeChHhccc
Confidence 99999977788899999999999999999999998866543 22 35899999999999999999
Q ss_pred cccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 322 TFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 322 NVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
||||+|++|+|.+|+.|..+|+++|+++|.
T Consensus 297 NvhP~K~ev~f~~e~~i~~~i~~~i~~~l~ 326 (617)
T PRK00095 297 NVHPAKHEVRFRDERLVHDLIVQAIQEALA 326 (617)
T ss_pred ccCCCcCEEEeCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999994
No 4
>KOG1978 consensus DNA mismatch repair protein - MLH2/PMS1/Pms2 family [Replication, recombination and repair]
Probab=100.00 E-value=1.2e-76 Score=701.26 Aligned_cols=311 Identities=29% Similarity=0.364 Sum_probs=279.4
Q ss_pred cccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEE-ecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCC
Q 000593 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYV-GVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGH 82 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~I-d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s 82 (1402)
|++||++++.+|+||+||.++++|||||||||||||||.|+|.+ |+|-.+|+|.|||+||+..|++-++..|+|||+.+
T Consensus 1 Ik~i~~~tvhrI~S~qvI~sl~sAVKELvENSiDAGAT~I~I~~kdyG~d~IEV~DNG~GI~~~n~~~l~lkh~TSKi~~ 80 (672)
T KOG1978|consen 1 IKQIPKDTVHRICSSQVITSLVSAVKELVENSIDAGATAIDIKVKDYGSDSIEVSDNGSGISATDFEGLALKHTTSKIVS 80 (672)
T ss_pred CCCCChhhhhccccCCeeccHHHHHHHHHhcCcccCCceeeEecCCCCcceEEEecCCCCCCccchhhhhhhhhhhcccc
Confidence 78999999999999999999999999999999999999999999 56778999999999999999999999999999999
Q ss_pred cccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEEEEEeC-ceeeeeccccCCCCCceEEEEcccccChhHH
Q 000593 83 LADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKG-SKCLYLGIDDERKDVGTTVVSRDLFYNQPVR 161 (1402)
Q Consensus 83 ~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~i~~~~-gk~~~~~~~~~~~~~GTTVtV~dLF~NlPVR 161 (1402)
|.|+..+ .|||||||||.|||+++.|+|+|++.+.+.|.++.++. |... ...+.+++.||||.|++||.|+|||
T Consensus 81 f~Dl~~l---~T~GFRGEALSsLCa~~dv~I~Trt~~~~vgt~l~~Dh~G~I~--~k~~~ar~~GTTV~v~~LF~tLPVR 155 (672)
T KOG1978|consen 81 FADLAVL---FTLGFRGEALSSLCALGDVMISTRSHSAKVGTRLVYDHDGHII--QKKPVARGRGTTVMVRQLFSTLPVR 155 (672)
T ss_pred hhhhhhh---hhhhhHHHHHHhhhhccceEEEEeeccCccceeEEEccCCcee--eeccccCCCCCEEEHhhhcccCCCc
Confidence 9999864 79999999999999999999999999889999999875 3332 4456778999999999999999999
Q ss_pred HHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcC---CCceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCCcE
Q 000593 162 RKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME---SEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDGAL 238 (1402)
Q Consensus 162 RK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~---~~k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~~~ 238 (1402)
+|.+.++.++++.++..+++.||+++++|+|.+.+.. +...++.+.+..+....+..+||...+..+.++..
T Consensus 156 ~kef~r~~Kref~k~i~li~~y~li~~~ir~~~~n~t~~~~k~iil~t~~~~~~k~~i~svfg~~~~~~l~p~~~----- 230 (672)
T KOG1978|consen 156 RKEFQRNIKRKFVKLISLIQAYALISTAIKFLVSNSTLAGKKNIILKTGGYGSDKINISSNFGSVEEENLEPLIF----- 230 (672)
T ss_pred hHHhhcchhhhhhhHHhhHHHHHhhcccceeeeeeccccCCceeEEecCCcchHHHHHHhhhhhhhhhccccccc-----
Confidence 9999999999999999999999999999999998753 23356777778888999999999998888877651
Q ss_pred EEEEEEeCC--CCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCC
Q 000593 239 EISGYISSP--YDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPH 316 (1402)
Q Consensus 239 kIeGfIS~P--~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPp 316 (1402)
|+.. ..++.+.++||+|||+|||....+.+++|++|..|.. ..| |+|.+|.
T Consensus 231 -----is~~~~g~~r~s~drqf~fIn~Rpv~~~~i~~~inevy~~~~~------------------~q~----l~i~V~~ 283 (672)
T KOG1978|consen 231 -----ISSCHHGCGRSSEDRQFIFINRRPVFPSDICRVINEVYKLYNE------------------RQY----LFLDVPE 283 (672)
T ss_pred -----cccccccccccCccceeeeecCccCCHHHHHHHHHHHhhhhcc------------------ccc----eeeeccc
Confidence 3332 2467889999999999999999999999998866532 133 9999999
Q ss_pred CcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 317 SLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 317 s~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
+.+||||.|+|+.|.|.++..|+..|++.+..+|.
T Consensus 284 ~~iDvNvtPDK~~vll~~e~~vl~~l~~~l~~~~~ 318 (672)
T KOG1978|consen 284 GCIDVNVTPDKRQVLLSNERSVLFSLRNSLVDFYN 318 (672)
T ss_pred cceeeeeCCCcceeeccchHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999996
No 5
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=100.00 E-value=8.8e-62 Score=562.44 Aligned_cols=339 Identities=29% Similarity=0.376 Sum_probs=303.5
Q ss_pred CCCcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEecC-eeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVC-NCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 1 M~~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~g-~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
|+.|++||++|+++|||||||.+|+.||||||||||||+||.|.|.+..| ...++|.|||.||..+||+.+|+||+|||
T Consensus 5 ~~~IrrLde~VVNRIAAGEVI~RP~NAlKEliENSLDA~ST~I~V~vk~GGLKLlQisDnG~GI~reDl~ilCeRftTSK 84 (694)
T KOG1979|consen 5 PRKIRRLDEDVVNRIAAGEVIQRPVNALKELIENSLDANSTSIDVLVKDGGLKLLQISDNGSGIRREDLPILCERFTTSK 84 (694)
T ss_pred chhhhcCcHHHHhHhhccchhhchHHHHHHHHhccccCCCceEEEEEecCCeEEEEEecCCCccchhhhHHHHHHhhhhh
Confidence 56799999999999999999999999999999999999999999999655 47899999999999999999999999999
Q ss_pred CCCcccccccCCCcccCccchhHHHHhhcccEEEEEEecCCCceEEEEEeCceeeeeccccCCCCCceEEEEcccccChh
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 159 (1402)
Q Consensus 80 i~s~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlP 159 (1402)
+..|+||.+ +.||||||||||||+.|++|+|+|+++++.+||+..+.+|+.. ..+++++..+||+|+|+|||||+|
T Consensus 85 L~kFEDL~~---lsTyGFRGEALASiShVA~VtV~TK~~~~~cayrasY~DGkm~-~~pKpcAgk~GT~I~vedLFYN~~ 160 (694)
T KOG1979|consen 85 LTKFEDLFS---LSTYGFRGEALASISHVAHVTVTTKTAEGKCAYRASYRDGKMI-ATPKPCAGKQGTIITVEDLFYNMP 160 (694)
T ss_pred cchhHHHHh---hhhcCccHHHHhhhhheeEEEEEEeecCceeeeEEEeeccccc-cCCCCccCCCceEEEehHhhccCH
Confidence 999999987 4799999999999999999999999999999999999999864 356678889999999999999999
Q ss_pred HHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhCcccccCcE-EEe-ecCC-
Q 000593 160 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLD-EVN-ANDG- 236 (1402)
Q Consensus 160 VRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG~e~as~Li-eIe-~e~~- 236 (1402)
+||+.|+ +...++.+|..+|.+||+.+|+|+|+++..+....-+.+.+..+..+.++.+||..++.+|. ++. +++.
T Consensus 161 ~Rrkal~-~~~EE~~ki~dlv~ryAIHn~~VsFs~rk~Gd~~~dl~t~~~~s~~D~ir~i~g~~Va~~ll~els~~~~~~ 239 (694)
T KOG1979|consen 161 TRRKALR-NHAEEYRKIMDLVGRYAIHNPRVSFSLRKQGDTVADLRTSVSCSREDNIRNIYGVSVAKNLLNELSKCDSKL 239 (694)
T ss_pred HHHHHhc-CcHHHHHHHHHHHHHHheeCCCcceEEeeccccccccccCCccccccchhhhhhhHHHHHHHHHhhhccCce
Confidence 9999997 47899999999999999999999999997654444577777778889999999999998877 555 4433
Q ss_pred -cEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcC
Q 000593 237 -ALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCP 315 (1402)
Q Consensus 237 -~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cP 315 (1402)
.+..+|||+.+. ....|....+|||||+|.+..+.++|+.+|++| +| .+.+||++|.|.+|
T Consensus 240 l~f~~~g~Isn~n-~~akk~i~vlFIN~RLVes~~Lr~ale~VYa~y---Lp--------------k~~~pFvYLsL~i~ 301 (694)
T KOG1979|consen 240 LKFSAEGYISNAN-YSAKKSILVLFINGRLVESDELRHALEEVYAAY---LP--------------KGHHPFVYLSLNID 301 (694)
T ss_pred eEEeccceEechh-hhhhhheEEEEEcCcEeehHHHHHHHHHHHHHh---cC--------------CCCCceEEEEEecC
Confidence 467899999874 344556678999999999999999999998876 33 45789999999999
Q ss_pred CCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHhhhcCCCCCchh
Q 000593 316 HSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDVD 362 (1402)
Q Consensus 316 ps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~~~~a~~~~s~~ 362 (1402)
|..|||||||+|++|.|.+++.|++.|++.|..-|....+...+-.+
T Consensus 302 p~~vDVNVHPTK~eV~FL~qEeIie~I~~~ie~~L~~~d~er~~~~q 348 (694)
T KOG1979|consen 302 PENVDVNVHPTKREVHFLNQEEIIERICQQIEERLSALDTERTFLKQ 348 (694)
T ss_pred HHHcccccCCCcceeEeecHHHHHHHHHHHHHHHHhccCcccchhhh
Confidence 99999999999999999999999999999999999888777766654
No 6
>TIGR00585 mutl DNA mismatch repair protein MutL. All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.4e-56 Score=506.41 Aligned_cols=305 Identities=38% Similarity=0.523 Sum_probs=265.3
Q ss_pred CCcccCChHHHHHHhccccccCHHHHHHHHHHccccCCCCeEEEEEecCe-eEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 2 ~~IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAgAT~I~V~Id~g~-~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
++|++||++|+++|+||+||.+|.+||+|||+||+||||+.|.|.+..++ ..|+|.|||.||++++++.++.+|+|||+
T Consensus 1 ~~I~~l~~~~~~~i~s~~~i~~~~~~l~eLi~Na~dA~a~~I~i~~~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsk~ 80 (312)
T TIGR00585 1 MTIKPLPPELVNKIAAGEVIERPASVVKELVENSLDAGATRIDVEIEEGGLKLIEVSDNGSGIDKEDLPLACERHATSKI 80 (312)
T ss_pred CcCeECCHHHHHHHhCcCchhhHHHHHHHHHHHHHHCCCCEEEEEEEeCCEEEEEEEecCCCCCHHHHHHHhhCCCcCCC
Confidence 26999999999999999999999999999999999999999999996554 46999999999999999999999999999
Q ss_pred CCcccccccCCCcccCccchhHHHHhhcccEEEEEEe-cCCCceEEEEEeCceeeeeccccCCCCCceEEEEcccccChh
Q 000593 81 GHLADMDDATGIGTFGFRGEALASISDVSLLEIITKA-HGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 159 (1402)
Q Consensus 81 ~s~eDL~~l~gI~T~GFRGEALaSIsaVS~LeI~SRt-~~~~~g~~i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlP 159 (1402)
.+.+|+.. +.++|||||||+||+++|+|+|+||+ ++...+|.+..+++.. ....+...++||||+|++||+|+|
T Consensus 81 ~~~~~~~~---~~~~G~rG~al~si~~~s~~~i~S~~~~~~~~~~~~~~~g~~~--~~~~~~~~~~GTtV~v~~lf~n~p 155 (312)
T TIGR00585 81 QSFEDLER---IETLGFRGEALASISSVSRLTITTKTSAADGLAWQALLEGGMI--EEIKPAPRPVGTTVEVRDLFYNLP 155 (312)
T ss_pred CChhHhhc---ccccCccchHHHHHHhhCcEEEEEeecCCCcceEEEEECCCcC--cccccccCCCccEEEEchhhccCc
Confidence 98888765 47999999999999999999999999 7778888887554422 122345568999999999999999
Q ss_pred HHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeC--CCCCHHH-HHHhhhCcccccCcEEEe-ecC
Q 000593 160 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTC--SSSSPLA-LLISSFGIEDFSFLDEVN-AND 235 (1402)
Q Consensus 160 VRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~--~sss~le-~L~sIFG~e~as~LieIe-~e~ 235 (1402)
||++++ ++.++++..|+.++++||+.||+|+|.|.+.+ +..+.+. +..++++ ++.++||....++|.++. .+.
T Consensus 156 ~r~~~~-~~~~~~~~~i~~~l~~~al~~p~i~f~l~~~~--~~~~~~~~~~~~~~~~~~i~~v~G~~~~~~l~~~~~~~~ 232 (312)
T TIGR00585 156 VRRKFL-KSPKKEFRKILDLLNRYALIHPDVSFSLTHDG--KKVLQLSTKPNQSLKERRIRSVFGTAVLSKLFPLLEWED 232 (312)
T ss_pred hhhhhc-cCcHHHHHHHHHHHHHHhhcCCCeEEEEEECC--EEEEEEcCCCCCCHHHHHHHHHhChHhHhhceeeecccC
Confidence 999976 45789999999999999999999999999853 3344443 3567889 599999999998998887 567
Q ss_pred CcEEEEEEEeCCCCCCCCcce-EEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEc
Q 000593 236 GALEISGYISSPYDSISVKAF-QYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRC 314 (1402)
Q Consensus 236 ~~~kIeGfIS~P~~srsSKd~-QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~c 314 (1402)
.+++|+|||+.|...+..+.. ||+|||||||..+.+.++|+.+|+.|. + ..+||+|+|+|+|
T Consensus 233 ~~~~v~G~is~p~~~~~~~~~~q~ifvNgR~v~~~~l~k~I~~~y~~~~---~--------------~~~~P~~vL~i~~ 295 (312)
T TIGR00585 233 GDLQLEGFISEPNVTRSRRSGWQFLFINGRPVELKLLLKAIREVYHEYL---P--------------KGQYPVFVLNLEI 295 (312)
T ss_pred CCEEEEEEEcCcccccCCCCcceEEEECCcEecchHHHHHHHHHHHHhc---c--------------CCCCcEEEEEEEE
Confidence 889999999999776666666 999999999999999999998776543 1 3579999999999
Q ss_pred CCCcccccccCCCCeEE
Q 000593 315 PHSLYDLTFDPLKTHVV 331 (1402)
Q Consensus 315 Pps~VDVNVhPaKtEV~ 331 (1402)
||+.|||||||+|++|+
T Consensus 296 p~~~iDvNv~P~K~eV~ 312 (312)
T TIGR00585 296 DPELVDVNVHPDKKEVR 312 (312)
T ss_pred ChHHcccCCCCCchhhC
Confidence 99999999999999985
No 7
>PF08676 MutL_C: MutL C terminal dimerisation domain; InterPro: IPR014790 MutL and MutS are key components of the DNA repair machinery that corrects replication errors []. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signalling complex for repair. The N-terminal region of MutL contains the ATPase domain and the C-terminal is involved in dimerisation []. ; GO: 0005524 ATP binding, 0006298 mismatch repair; PDB: 3NCV_B 1X9Z_B 3GAB_C 3KDK_A 3KDG_A.
Probab=99.95 E-value=1e-27 Score=242.61 Aligned_cols=143 Identities=35% Similarity=0.464 Sum_probs=113.2
Q ss_pred CceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCCccccccCcceeeecCHHHHHHHHHHHHHHHHcC
Q 000593 1165 DAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 1244 (1402)
Q Consensus 1165 ~~rVIGQvdkkFIL~e~~dgLyIIDQHAAHERIlyErL~k~~~~~~~~sq~lL~p~Q~LllP~~e~~LL~e~~e~LeklG 1244 (1402)
-+++|||++++|||++.+++||+||||||||||+||+|++++..+. .+|.+| .|+.+.+++.+.++++++.+.|++||
T Consensus 2 ~~~vlgq~~~~yil~~~~~~L~liDqHAAhERi~~E~l~~~~~~~~-~~q~Ll-~P~~~~ls~~e~~~l~~~~~~L~~~G 79 (144)
T PF08676_consen 2 LLKVLGQLDNKYILAESEDGLYLIDQHAAHERILYEKLLKQLEEGE-QSQPLL-FPIELELSPQEAELLEENKEELEKLG 79 (144)
T ss_dssp T-EEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHCCHCS--EEEEE-EEEEEE--HHHHHHHHHHHHHHHHTT
T ss_pred ceeeHhHhCCEEEEEEeCCCEEEEEHHHHHHHHHHHHHHHhhccCC-CceecC-CCccCCCCHHHHHHHHHHHHHHHhCC
Confidence 5799999999999999999999999999999999999999987654 444444 45788999999999999999999999
Q ss_pred cEEEEeccCccccccccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHhhcccccc
Q 000593 1245 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRGAIMF 1324 (1402)
Q Consensus 1245 Feiei~~~G~~sFG~n~~i~~~~~~tI~IrsVP~iL~~~~~~~dl~ElL~eL~e~~g~~~~p~~i~elLAS~ACRsAIK~ 1324 (1402)
|+++. ||. +++.|++||.++........+.++|..+.+.. .. +..+.++++++|||+|||+
T Consensus 80 f~~~~-------~~~---------~~~~v~~vP~~l~~~~~~~~l~~ll~~l~~~~--~~-~~~~~~~~~~~AC~~Aik~ 140 (144)
T PF08676_consen 80 FEIEE-------FGE---------NSIIVRSVPAILREQDLEELLRELLEELQEKE--ES-PEIIEELLASMACRSAIKA 140 (144)
T ss_dssp -EEEE-------EST---------TEEEEEEEECCCTTSSHHHHHHHHHHHHCTCS--S--CCCHHHHHHHHHTTSSSSS
T ss_pred eEEEE-------ecC---------CEEEEEEeCcccccccHHHHHHHHHHHHHhCC--Cc-HHHHHHHHHHHHHHHhhcC
Confidence 99883 443 38999999999986644556677777776543 12 5667889999999999999
Q ss_pred CCCC
Q 000593 1325 GDSL 1328 (1402)
Q Consensus 1325 GD~L 1328 (1402)
||+|
T Consensus 141 g~~L 144 (144)
T PF08676_consen 141 GDKL 144 (144)
T ss_dssp S---
T ss_pred CCCC
Confidence 9987
No 8
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Probab=99.92 E-value=2.3e-24 Score=262.22 Aligned_cols=246 Identities=20% Similarity=0.169 Sum_probs=189.8
Q ss_pred CHHHHHHHHHHccccCCCC-----eEEEEEecC---eeEEEEEeCCCCCCHHHHHHhhcc-ccCCCCCCcccccccCCCc
Q 000593 23 DLTRVVEELVFNSVDAGAT-----KVFVYVGVC---NCYVKVVDDGSGISRDGLVLLGER-HATSKLGHLADMDDATGIG 93 (1402)
Q Consensus 23 sp~svVKELVENSLDAgAT-----~I~V~Id~g---~~~I~V~DNG~GIs~eDL~~~~~r-haTSKi~s~eDL~~l~gI~ 93 (1402)
.+.++|+|||+|||||+++ .|.|.+..+ ...|.|.|||.||++++++.+|.+ |+|||+.+. +.
T Consensus 36 ~L~~VVkELVeNAIDA~~~~g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF~atSK~~~~--------~q 107 (659)
T PRK14867 36 SMTTIIHELVTNSLDACEEAEILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKMLAGSKMHRL--------IQ 107 (659)
T ss_pred HHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccccccCcccce--------ec
Confidence 4569999999999999986 688888542 246999999999999999999999 899999643 25
Q ss_pred ccCccchhHHHHhhcccE------EEEEEecCCC---ceEEEEE--eCceeeeeccccCCCCCceEEE--EcccccChhH
Q 000593 94 TFGFRGEALASISDVSLL------EIITKAHGRP---NGYRKVM--KGSKCLYLGIDDERKDVGTTVV--SRDLFYNQPV 160 (1402)
Q Consensus 94 T~GFRGEALaSIsaVS~L------eI~SRt~~~~---~g~~i~~--~~gk~~~~~~~~~~~~~GTTVt--V~dLF~NlPV 160 (1402)
+.|++|+||+++..++++ +|.|++.++. .++.+.+ ++|+.... ..+...++||+|+ |++||||
T Consensus 108 S~G~rG~GLa~a~~vsql~~G~pI~I~S~~g~G~~f~i~L~i~i~~n~G~I~~~-~~~~~~~~GT~Ie~~V~dLFyn--- 183 (659)
T PRK14867 108 SRGQQGIGAAGVLLFSQITTGKPLKITTSTGDGKIHEMEIKMSVEKNEGDIVSH-KVREGFWRGTRVEGEFKEVTYN--- 183 (659)
T ss_pred cCCCCcccHHHHHHHHHHhcCCcEEEEEEcCCCEEEEEEEEEEecccCCeeccc-ccCCCCCCCcEEEEEEeeceec---
Confidence 889999999999877765 6888875543 2333445 56765422 1234568999999 9999999
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCC----CceEEEeCCCCCHHHHHHhhhCcccccCcEEEeecCC
Q 000593 161 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMES----EDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDG 236 (1402)
Q Consensus 161 RRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~----~k~ll~t~~sss~le~L~sIFG~e~as~LieIe~e~~ 236 (1402)
|+ +.. |.++|+++||+||+++|+|.+.+. .+....+++ .+.+++..++|.+ ...|+.+..+.+
T Consensus 184 R~---------E~~-i~e~l~r~ALanP~i~f~l~~~~~~~~~~r~~~~lp~--~~~e~~ph~~G~~-~~~Li~i~~~~~ 250 (659)
T PRK14867 184 RR---------EQG-PFEYLRRISLSTPHAKITLKDPEETVVFDRTVDEIPE--KPEEMKPHPYGLT-TDELLYIARKTD 250 (659)
T ss_pred hh---------hHH-HHHHHHHHHHhCCCcEEEEEeCCccccCCcceeecCc--CHHHHhhccCccc-hhhceehhccCC
Confidence 33 223 788999999999999999998632 122233332 6778999999999 778999988888
Q ss_pred cEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCC
Q 000593 237 ALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPH 316 (1402)
Q Consensus 237 ~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPp 316 (1402)
.++|+||+ .|...+.++..|+ +|.++.+.++|.. +|+..++ .++||+++|+|++||
T Consensus 251 ~~~v~gfl-~p~~sR~~~~~~~------~V~~~~l~~ai~~---ay~~~l~--------------~~~~P~~~L~l~i~~ 306 (659)
T PRK14867 251 SSKVSSML-NSELSRVTTKRIK------ELEEYVLRDLLLE---NYRDSVF--------------WDTVVSCYLNFDFTK 306 (659)
T ss_pred ceEEEEEe-cchhccCCCCcEE------EEccHHHHHHHHH---HHhhccc--------------CCCcceEEEEEEeCc
Confidence 89999998 7888888888888 5555555666543 5665544 468999999999998
Q ss_pred C
Q 000593 317 S 317 (1402)
Q Consensus 317 s 317 (1402)
-
T Consensus 307 ~ 307 (659)
T PRK14867 307 Y 307 (659)
T ss_pred c
Confidence 4
No 9
>PF01119 DNA_mis_repair: DNA mismatch repair protein, C-terminal domain; InterPro: IPR013507 This entry represents the C-terminal domain of DNA mismatch repair proteins, such as MutL. This domain functions in promoting dimerisation []. The dimeric MutL protein has a key function in communicating mismatch recognition by MutS to downstream repair processes. Mismatch repair contributes to the overall fidelity of DNA replication by targeting mispaired bases that arise through replication errors during homologous recombination and as a result of DNA damage. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex [].; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1B62_A 1NHJ_A 1BKN_B 1NHH_A 1B63_A 1NHI_A 3NA3_A 1EA6_A 1H7U_A 1H7S_B ....
Probab=99.89 E-value=5.2e-23 Score=203.84 Aligned_cols=119 Identities=32% Similarity=0.440 Sum_probs=102.4
Q ss_pred HHhhhCcccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCccccccCcc
Q 000593 216 LISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFL 295 (1402)
Q Consensus 216 L~sIFG~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~~~~ 295 (1402)
+.++||.+.+++|.+++.+.+.++|+|||++|...+++++.||+|||||||..+.+.++|+++|. ...+
T Consensus 1 I~~i~G~~~~~~l~~i~~~~~~~~i~G~is~p~~~~~~~~~q~ifVN~R~V~~~~l~~~I~~~y~---~~~~-------- 69 (119)
T PF01119_consen 1 IAQIFGKEFASNLIEIDSEDEDFSIEGYISKPDVSRSSRDRQFIFVNGRPVENKALSKAINEAYR---ERLP-------- 69 (119)
T ss_dssp HHHHHHHHHHCCEEEEEEEECCEEEEEEEE-SSCSBSSCTCEEEEETTEEE--HHHHHHHHHHHH---CTTC--------
T ss_pred CeEeECHHHHhccEEEeccCCCEEEEEEEECchhccCCCCcEEEEeCCCeEeChHHHHHHHHHHh---hccc--------
Confidence 56899999999999999999999999999999888888999999999999999999999987654 2222
Q ss_pred cCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 296 KGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 296 ~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
.++||+|+|+|+|||+.|||||||+|++|+|.+|+.|+.+|+++|+++|+
T Consensus 70 ------~~~~P~~vL~i~~p~~~vDVNvhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 119 (119)
T PF01119_consen 70 ------KGRYPIFVLFIEIPPSEVDVNVHPAKREVRFRDEDEILNLIEEAIREALS 119 (119)
T ss_dssp ------TTSB-EEEEEEE-SGGGEEETSSTTTT-EEETTHHHHHHHHHHHHHHHH-
T ss_pred ------CCCCceEEEEEEcchHHccccccccceEEEecCHHHHHHHHHHHHHHHhC
Confidence 46899999999999999999999999999999999999999999999984
No 10
>cd03485 MutL_Trans_hPMS_1_like MutL_Trans_hPMS1_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM1 (hPSM1) and yeast MLH2. hPSM1 and yMLH2 are members of the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. PMS1 forms a heterodimer with MLH1. The MLH1-PMS1 complex functions in meiosis. Loss of yMLH2 results in a small but significant decrease in spore viability and a significant increase in gene conversion frequencies. A role for hMLH1-hPMS1 in DNA mismatch repair has not been established. Mutation in hMLH1 accounts for a large fraction of Lynch syndrome (HNPCC) families, however there is no convincing evidence to support hPMS1 having a role in HNPCC predisposition.
Probab=99.88 E-value=2.9e-22 Score=202.10 Aligned_cols=125 Identities=26% Similarity=0.393 Sum_probs=111.8
Q ss_pred HHHHHHhhhCcccccCcEEEeecC--CcEEEEEEEeCC--CCCCCCcceEEEEEcCccccc-chHHHHHHHHHHhhccCC
Q 000593 212 PLALLISSFGIEDFSFLDEVNAND--GALEISGYISSP--YDSISVKAFQYVYINSRYVCK-GPIHKLLNHLAASFDCSD 286 (1402)
Q Consensus 212 ~le~L~sIFG~e~as~LieIe~e~--~~~kIeGfIS~P--~~srsSKd~QFIFVNGRpV~s-~~I~KlIneL~~sF~sl~ 286 (1402)
+.+++.++||...+.+|++++.+. +.++|+|+|+.| ...+.+++.||+|||||||.. +.+.++|+++|+.+..
T Consensus 2 l~~~i~~v~G~~~~~~li~i~~~~~~~~~~i~G~is~p~~~~~~~~~~~q~~fVN~R~v~~~~~l~k~i~~~y~~~~~-- 79 (132)
T cd03485 2 HKEALARVLGTAVAANMVPVQSTDEDPQISLEGFLPKPGSDVSKTKSDGKFISVNSRPVSLGKDIGKLLRQYYSSAYR-- 79 (132)
T ss_pred HHHHHHHHhCHHHHhccEEEeccCCCCcEEEEEEECCCCcCCCcccCCcEEEEECCeecccchHHHHHHHHHHHHHhc--
Confidence 568999999999999999999887 789999999999 446778999999999999999 9999999887765431
Q ss_pred ccccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHH
Q 000593 287 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAW 350 (1402)
Q Consensus 287 p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL 350 (1402)
+++..+||+++|+|+|||+.|||||||+|++|+|.+|+.|+++|+++|+.+|
T Consensus 80 ------------~~~~~~~P~~~L~i~~~~~~vDVNVhP~K~eV~f~~e~~v~~~i~~~v~~~~ 131 (132)
T cd03485 80 ------------KSSLRRYPVFFLNILCPPGLVDVNIEPDKDDVLLQNKEAVLQAVENLLESLY 131 (132)
T ss_pred ------------cccccCCCEEEEEEEcCCCceeeccCCccCEEEEcChHHHHHHHHHHHHHHc
Confidence 0135689999999999999999999999999999999999999999999987
No 11
>cd03482 MutL_Trans_MutL MutL_Trans_MutL: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to Escherichia coli MutL. EcMutL belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from the ATP-binding site to the DNA breakage/reunion regions of the enzymes. It has been suggested that during initiation of DNA mismatch repair in E. coli, the mismatch recognition protein MutS recruits MutL in the presence of ATP. The MutS(ATP)-MutL ternary complex formed, then recruits the latent endonuclease MutH. Prokaryotic MutS and MutL are homodimers.
Probab=99.88 E-value=2e-22 Score=201.35 Aligned_cols=122 Identities=27% Similarity=0.357 Sum_probs=111.3
Q ss_pred HHHHHhhhCcccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCcccccc
Q 000593 213 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANN 292 (1402)
Q Consensus 213 le~L~sIFG~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~ 292 (1402)
++++..+||...++.|++++.+.+.++|+|||+.|...+++++.||+|||||||.++.+.++|+++|..+ .+
T Consensus 2 ~~ri~~v~G~~~~~~li~i~~~~~~~~i~G~is~p~~~r~~~~~q~ifVN~R~V~~~~l~~ai~~~y~~~---~~----- 73 (123)
T cd03482 2 LQRLADILGEDFAEQALAIDEEAGGLRLSGWIALPTFARSQADIQYFYVNGRMVRDKLISHAVRQAYSDV---LH----- 73 (123)
T ss_pred HhHHHHHhCHHHHhccceEeccCCCEEEEEEEeCchhccCCCCcEEEEEcCcEECChHHHHHHHHHHHHh---cc-----
Confidence 4789999999999999999988888999999999988888999999999999999999999998866543 22
Q ss_pred CcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 293 GFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 293 ~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
.++||+++|+|+|||+.|||||||+|++|+|.+|+.|+++|.++|+++|+
T Consensus 74 ---------~~~~P~~vL~l~ipp~~vDvNVhP~K~eV~f~~e~~i~~~i~~~i~~~L~ 123 (123)
T cd03482 74 ---------GGRHPAYVLYLELDPAQVDVNVHPAKHEVRFRDSRLVHDFIYHAVKKALA 123 (123)
T ss_pred ---------CCCCcEEEEEEEcChHheeeccCCCccEEEECCHHHHHHHHHHHHHHHhC
Confidence 36899999999999999999999999999999999999999999999874
No 12
>cd03483 MutL_Trans_MLH1 MutL_Trans_MLH1: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH1 (MutL homologue 1). This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking hMLH1 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot syndrome (HNPCC variant). Mutation in hMLH1 accounts for a large fraction of HNPCC families.
Probab=99.88 E-value=2.5e-22 Score=201.73 Aligned_cols=122 Identities=23% Similarity=0.299 Sum_probs=110.2
Q ss_pred HHHHHHhhhCcccccCcEEEeecC----CcEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCc
Q 000593 212 PLALLISSFGIEDFSFLDEVNAND----GALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDS 287 (1402)
Q Consensus 212 ~le~L~sIFG~e~as~LieIe~e~----~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p 287 (1402)
+.+++..+||...+..|++++.+. +.++|+||+++|... ..++.||+|||||||..+.+.++|+++|+.| ++
T Consensus 2 ~~~~i~~v~G~~~~~~li~i~~~~~~~~~~~~i~G~is~p~~~-~~~~~q~~fVNgR~V~~~~l~~aI~~~Y~~~---l~ 77 (127)
T cd03483 2 TKDNIRSVYGAAVANELIEVEISDDDDDLGFKVKGLISNANYS-KKKIIFILFINNRLVECSALRRAIENVYANY---LP 77 (127)
T ss_pred HHHHHHHHhCHHHHhcceEEecccCCcCCcEEEEEEEcCchhc-CCCceEEEEEcCCEecCHHHHHHHHHHHHHh---Cc
Confidence 578999999999999999999776 579999999999877 7799999999999999999999998876544 22
Q ss_pred cccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 288 WKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 288 ~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
.++||+++|+|++||+.|||||||+|++|+|.+++.|+++|+++|+++|.
T Consensus 78 --------------~~~~P~~~L~i~i~p~~vDVNVHP~K~eV~f~~e~~i~~~i~~~v~~~L~ 127 (127)
T cd03483 78 --------------KGAHPFVYLSLEIPPENVDVNVHPTKREVHFLNEEEIIERIQKLVEDKLS 127 (127)
T ss_pred --------------CCCccEEEEEEEeChHHeeeccCCCccEEEecCHHHHHHHHHHHHHHHhC
Confidence 35899999999999999999999999999999999999999999999873
No 13
>cd03486 MutL_Trans_MLH3 MutL_Trans_MLH3: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to yeast and human MLH3 (MutL homologue 3). MLH3 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. MLH1 forms heterodimers with MLH3. The MLH1-MLH3 complex plays a role in meiosis. A role for hMLH1-hMLH3 in DNA mismatch repair (MMR) has not been established. It has been suggested that hMLH3 may be a low risk gene for colorectal cancer; however there is little evidence to support it having a role in classical HNPCC.
Probab=99.88 E-value=3.2e-22 Score=204.13 Aligned_cols=135 Identities=33% Similarity=0.551 Sum_probs=113.8
Q ss_pred HHHHHHhhhCcccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhcc-----CC
Q 000593 212 PLALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDC-----SD 286 (1402)
Q Consensus 212 ~le~L~sIFG~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~s-----l~ 286 (1402)
+.+++..+||...+..|++++.+.++++|+|||+.|. +.+++.||+|||||+|..+.+.++|+++|..+.. ..
T Consensus 2 ~~~~i~~i~G~~~~~~l~~v~~~~~~~~v~G~is~p~--~~sk~~q~ifVN~R~v~~~~l~~aI~~~y~~~~~~~~~~~~ 79 (141)
T cd03486 2 ILSVFKQIYGLVLAQKLKEVSAKFQEYEVSGYISSEG--HYSKSFQFIYVNGRLYLKTRFHKLINKLFRKTSAVAKNKSS 79 (141)
T ss_pred HHHHHHHHhChhhhccEEEeecccCcEEEEEEEcCCC--CCCCceEEEEECCEEechHHHHHHHHHHHhhcccccccccc
Confidence 4678999999999999999999989999999999985 6789999999999999999999999998765211 11
Q ss_pred ccccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 287 SWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 287 p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
.+. .+. ...+.+.++||+|+|+|+|||+.|||||||+|++|+|.+|+.|+.+|+++|+++|+
T Consensus 80 ~~~-~~~--~~~~~~~~~~P~~vL~i~~p~~~vDvNvhP~K~eV~f~~~~~i~~~i~~~i~~~L~ 141 (141)
T cd03486 80 PQS-KSS--RRGKRSQESYPVFVLNITCPASEYDLSQEPSKTIIEFKDWKTLLPLILEVVKSFLK 141 (141)
T ss_pred ccc-ccc--ccccCCccCCCEEEEEEecCchHheeeeCCceeEEEecChHHHHHHHHHHHHHHhC
Confidence 000 000 11223567999999999999999999999999999999999999999999999984
No 14
>cd00782 MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to human MLH1, hPMS2, hPMS1, hMLH3 and E. coli MutL, MLH1 forms heterodimers with PMS2, PMS1 and MLH3. These three complexes have distinct functions in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Roles for hMLH1-hPMS1 or hMLH1-hMLH3 in MMR have not been established. Cells lacking either hMLH1 or hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hMLH1 causes predisposition to HNPCC, Muir-Torre syndrome and Turcot synd
Probab=99.86 E-value=9.8e-22 Score=194.17 Aligned_cols=121 Identities=35% Similarity=0.454 Sum_probs=110.7
Q ss_pred HHHHHhhhCcccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccchHHHHHHHHHHhhccCCcccccc
Q 000593 213 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANN 292 (1402)
Q Consensus 213 le~L~sIFG~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~~I~KlIneL~~sF~sl~p~~~~~ 292 (1402)
.+++..+||....+.+++++.+.+.++|+|+|+.|...+.+++.||+|||||||..+.+.++|+.+|..|..
T Consensus 2 ~~~i~~v~G~~~~~~l~~i~~~~~~~~i~G~is~~~~~~~~~~~q~~fVN~R~v~~~~l~~ai~~~y~~~~~-------- 73 (122)
T cd00782 2 KDRIAQVYGKEVAKNLIEVELESGDFRISGYISKPDFGRSSKDRQFLFVNGRPVRDKLLSKAINEAYRSYLP-------- 73 (122)
T ss_pred HHHHHHHcCHHHHhcceEEeccCCCEEEEEEEECchhhcCCCccEEEEECCeEecCHHHHHHHHHHHHHhCc--------
Confidence 468999999999999999999988999999999997778899999999999999999999999887665421
Q ss_pred CcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHH
Q 000593 293 GFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAW 350 (1402)
Q Consensus 293 ~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL 350 (1402)
..+||+|+|+|+||++.|||||||+|++|+|++|+.|+++|+++|+++|
T Consensus 74 ---------~~~~P~~~L~i~~~~~~~DvNvhP~K~eV~f~~~~~i~~~i~~~v~~~l 122 (122)
T cd00782 74 ---------KGRYPVFVLNLELPPELVDVNVHPTKREVRFSDEEEVLELIREALRSAL 122 (122)
T ss_pred ---------CCCCcEEEEEEEeChhheeeeeCCCCCEEEecCHHHHHHHHHHHHHHhC
Confidence 3589999999999999999999999999999999999999999999875
No 15
>smart00853 MutL_C MutL C terminal dimerisation domain. MutL and MutS are key components of the DNA repair machinery that corrects replication errors. MutS recognises mispaired or unpaired bases in a DNA duplex and in the presence of ATP, recruits MutL to form a DNA signaling complex for repair. The N terminal region of MutL contains the ATPase domain and the C terminal is involved in dimerisation.
Probab=99.86 E-value=4.9e-21 Score=191.58 Aligned_cols=134 Identities=33% Similarity=0.391 Sum_probs=106.2
Q ss_pred ceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHhcCCC-ccccccCcceeeecCHHHHHHHHHHHHHHHHcC
Q 000593 1166 AKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEG-KSVAYLDAEQELVLPEIGYQLLQNFAEQIKDWG 1244 (1402)
Q Consensus 1166 ~rVIGQvdkkFIL~e~~dgLyIIDQHAAHERIlyErL~k~~~~~~~-~sq~lL~p~Q~LllP~~e~~LL~e~~e~LeklG 1244 (1402)
+++|||++++||+++.+++|||||||||||||+||+|++.+..+.. .+|.+| .|..+.+++.+.+++.++.+.|++||
T Consensus 2 ~~~l~qv~~~yil~~~~~~l~liDqhaA~ERi~~e~l~~~~~~~~~~~~Q~Ll-~P~~i~l~~~e~~~l~~~~~~l~~~G 80 (136)
T smart00853 2 GRVLGQVHGTYILAESEDGLVLIDQHAAHERILYEQLKAKLQAGLLEKSQPLL-IPVILELSPEEAALLEEHQELLARLG 80 (136)
T ss_pred ccEEEEEcCEEEEEEcCCCEEEEEhHHHHHHHHHHHHHHHHhcCCCccccccC-CCEEEEcCHHHHHHHHHHHHHHHHcC
Confidence 6899999999999999999999999999999999999998754333 244444 45789999999999999999999999
Q ss_pred cEEEEeccCccccccccccccccceEEEEEeeeccccCCCChhhHHHHHHHHHhcCCCCCChHHHHHHHHHHh
Q 000593 1245 WICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKA 1317 (1402)
Q Consensus 1245 Feiei~~~G~~sFG~n~~i~~~~~~tI~IrsVP~iL~~~~~~~dl~ElL~eL~e~~g~~~~p~~i~elLAS~A 1317 (1402)
|+++. ||. +++.|+++|.++........+.+++..+.+. +....+..+.++++++|
T Consensus 81 f~~~~-------~~~---------~~~~i~~vP~~l~~~~~~~~l~~ll~~l~~~-~~~~~~~~~~~~la~~A 136 (136)
T smart00853 81 FELEI-------FGG---------QSVILRSVPALLRQQNLQELIPELLDLLAEG-GSTSLPQLVEALLASLA 136 (136)
T ss_pred eEEEc-------cCC---------CEEEEEeECccccCcCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHhhC
Confidence 99883 443 3799999999887654455667777776653 22344555666788776
No 16
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Probab=99.86 E-value=9.7e-22 Score=239.91 Aligned_cols=202 Identities=17% Similarity=0.224 Sum_probs=161.6
Q ss_pred CHHHHHHHHHHccccCCCC-----eEEEEEecCe--eEEEEEeCCCCCCHHHHHHhhcccc-CCCCCCcccccccCCCcc
Q 000593 23 DLTRVVEELVFNSVDAGAT-----KVFVYVGVCN--CYVKVVDDGSGISRDGLVLLGERHA-TSKLGHLADMDDATGIGT 94 (1402)
Q Consensus 23 sp~svVKELVENSLDAgAT-----~I~V~Id~g~--~~I~V~DNG~GIs~eDL~~~~~rha-TSKi~s~eDL~~l~gI~T 94 (1402)
.+.++|+|||+|||||+++ .|.|.+..++ ..|.|.|||.||++++++.+|.+|+ |||+...+ .+
T Consensus 46 ~L~tVLkNLIeNALDAs~~~gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~~tSKf~~~~--------~s 117 (795)
T PRK14868 46 GLVTAVKEAVDNALDATEEAGILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLLYGSRFHARE--------QS 117 (795)
T ss_pred HHHHHHHHHHHHHHHhCcccCCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhcccccccccc--------cC
Confidence 4779999999999999876 5888885433 5899999999999999999999976 88986431 47
Q ss_pred cCccchhHHHHhhccc------EEEEEEecCCCce--EEEEEeCce---ee-eeccccCCCCCceEEEEcccccChhHHH
Q 000593 95 FGFRGEALASISDVSL------LEIITKAHGRPNG--YRKVMKGSK---CL-YLGIDDERKDVGTTVVSRDLFYNQPVRR 162 (1402)
Q Consensus 95 ~GFRGEALaSIsaVS~------LeI~SRt~~~~~g--~~i~~~~gk---~~-~~~~~~~~~~~GTTVtV~dLF~NlPVRR 162 (1402)
+|++|+||+++..++. ++|+|++.+...+ +.+.++.++ .+ .....+...++||+|+|+ ||+|+|+|+
T Consensus 118 rG~rG~GLglai~~sqlt~GgpI~I~S~~~~~~~g~~~~L~Id~gkNep~I~~~~~~~~~~~~GT~IeV~-Lf~N~pAR~ 196 (795)
T PRK14868 118 RGQQGIGISAAVLYSQLTSGKPAKITSRTQGSEEAQYFELIIDTDTNEPEISVEETTTWDRPHGTRIELE-MEANMRARQ 196 (795)
T ss_pred CCCCceehHHHHHHHHHcCCCcEEEEeCCCCCCceeEEEEEEecCCCccceecceecccCCCCceEEEEE-EEccCchhh
Confidence 8999999999998886 6899998776666 477777764 21 112234457899999999 999999987
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEe-CCCCCHHHHHHhh----hCcccccCcEEEeecCCc
Q 000593 163 KYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCT-CSSSSPLALLISS----FGIEDFSFLDEVNANDGA 237 (1402)
Q Consensus 163 K~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t-~~sss~le~L~sI----FG~e~as~LieIe~e~~~ 237 (1402)
| |.++|+++||+||+++|+|.+. +..+.+ +....+......+ +|.++ ..|..+....+.
T Consensus 197 k------------I~eyl~r~Al~nP~a~f~l~~~---~~~~~~~r~t~~lp~~p~eIkPHP~Gve~-~~L~~m~~~t~~ 260 (795)
T PRK14868 197 Q------------LHDYIKHTAVVNPHARIELREP---DESLKFERATDQLPAETEEIRPHPHGVEL-GTLLKMLEATDS 260 (795)
T ss_pred h------------HHHHHHHHHhhCCCeEEEEEEC---CEEEEecccccccccCchhccCCCCCcCH-HHHHHHHhccCC
Confidence 6 6789999999999999999985 444555 4555666788888 89887 667777777788
Q ss_pred EEEEEEEeCCCCC
Q 000593 238 LEISGYISSPYDS 250 (1402)
Q Consensus 238 ~kIeGfIS~P~~s 250 (1402)
++|.||+ .|...
T Consensus 261 ~~l~gFL-~~efs 272 (795)
T PRK14868 261 YSVSGFL-QEEFT 272 (795)
T ss_pred cEeHHhh-hhhhc
Confidence 9999999 56543
No 17
>cd03484 MutL_Trans_hPMS_2_like MutL_Trans_hPMS2_like: transducer domain, having a ribosomal S5 domain 2-like fold, found in proteins similar to human PSM2 (hPSM2). hPSM2 belongs to the DNA mismatch repair (MutL/MLH1/PMS2) family. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. Included in this group are proteins similar to yeast PMS1. The yeast MLH1-PMS1 and the human MLH1-PMS2 heterodimers play a role in meiosis. hMLH1-hPMS2 also participates in the repair of all DNA mismatch repair (MMR) substrates. Cells lacking hPMS2 have a strong mutator phenotype and display microsatellite instability (MSI). Mutation in hPMS2 causes predisposition to HPNCC and Turcot syndrome.
Probab=99.85 E-value=7.3e-21 Score=194.58 Aligned_cols=122 Identities=30% Similarity=0.436 Sum_probs=110.1
Q ss_pred HHHHHHhhhCcccccCcEEEeecC-----------------CcEEEEEEEeCC--CCCCCCcceEEEEEcCcccccchHH
Q 000593 212 PLALLISSFGIEDFSFLDEVNAND-----------------GALEISGYISSP--YDSISVKAFQYVYINSRYVCKGPIH 272 (1402)
Q Consensus 212 ~le~L~sIFG~e~as~LieIe~e~-----------------~~~kIeGfIS~P--~~srsSKd~QFIFVNGRpV~s~~I~ 272 (1402)
+.+++..+||...++.|+.++.+. ..++|+|+|+.| ...+.+++.||+|||||||..+.+.
T Consensus 2 ~~~~i~~v~G~~~~~~li~v~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVN~R~V~~~~l~ 81 (142)
T cd03484 2 IKDNIINVFGGKVIKGLIPINLELDVNPTKEELDSDEDLADSEVKITGYISKPSHGCGRSSSDRQFFYINGRPVDLKKVA 81 (142)
T ss_pred HHHHHHHHhCHHHHhcccceeccccccccccccccccccCCCcEEEEEEECCCcccCCCCCCCcEEEEECCeecCCHHHH
Confidence 568999999999998999988766 679999999999 6677889999999999999999999
Q ss_pred HHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCchHHHHHHHHHHHHHHh
Q 000593 273 KLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 273 KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE~~Il~lI~kaIksfL~ 351 (1402)
++|+.+|..|. ..+||+++|+|+|||+.|||||||+|++|+|.+++.|+++|+++|+++|.
T Consensus 82 ~aI~~~y~~~~------------------~~~~P~~vL~i~vp~~~vDvNVhP~K~eV~f~~e~~i~~~i~~~v~~~~~ 142 (142)
T cd03484 82 KLINEVYKSFN------------------SRQYPFFILNISLPTSLYDVNVTPDKRTVLLHDEDRLIDTLKTSLSELFE 142 (142)
T ss_pred HHHHHHHHHhc------------------CcCCcEEEEEEEeCCcceeeeeCCccCEEEEcChHHHHHHHHHHHHHHhC
Confidence 99988765442 25899999999999999999999999999999999999999999999873
No 18
>smart00433 TOP2c TopoisomeraseII. Eukaryotic DNA topoisomerase II, GyrB, ParE
Probab=99.84 E-value=4.4e-20 Score=225.84 Aligned_cols=300 Identities=15% Similarity=0.159 Sum_probs=193.9
Q ss_pred HHHHHHHHHHccccCC----CCeEEEEEecCeeEEEEEeCCCCCCHHHH--------HHhhc-cccCCCCCCcccccccC
Q 000593 24 LTRVVEELVFNSVDAG----ATKVFVYVGVCNCYVKVVDDGSGISRDGL--------VLLGE-RHATSKLGHLADMDDAT 90 (1402)
Q Consensus 24 p~svVKELVENSLDAg----AT~I~V~Id~g~~~I~V~DNG~GIs~eDL--------~~~~~-rhaTSKi~s~eDL~~l~ 90 (1402)
+.++|+|||+||+||+ |+.|.|.|+.++ .|+|.|||+|||.+.. +.++. .|+++|+. |...
T Consensus 2 L~~~v~ElvdNAiD~~~~g~at~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~~~~~~e~v~~~lhag~kfd---~~~~-- 75 (594)
T smart00433 2 LHHLVDEIVDNAADEALAGYMDTIKVTIDKDN-SISVEDNGRGIPVEIHPKEKKYAPEVIFTVLHAGGKFD---DDAY-- 75 (594)
T ss_pred ceEEEeeehhcccchhccCCCCEEEEEEeCCC-eEEEEEeCCceeCCccCcCCCCcHHHhhhhhcccCCCC---CCCc--
Confidence 3468999999999998 999999998765 8999999999996532 23333 36667753 2221
Q ss_pred CCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeC-ceeee-eccccCCCCCceEEEEcccccChhHHHHHhhc
Q 000593 91 GIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKG-SKCLY-LGIDDERKDVGTTVVSRDLFYNQPVRRKYMQS 167 (1402)
Q Consensus 91 gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~-gk~~~-~~~~~~~~~~GTTVtV~dLF~NlPVRRK~L~s 167 (1402)
..|.||||+||++++++| .++|+|+..+. .|...+.. |+... .........+||+|++ +|+|++|...
T Consensus 76 -k~s~G~~G~Gls~vnalS~~l~v~~~~~g~--~~~~~~~~~G~~~~~~~~~~~~~~~GT~V~F------~Pd~~~F~~~ 146 (594)
T smart00433 76 -KVSGGLHGVGASVVNALSTEFEVEVARDGK--EYKQSFSNNGKPLSEPKIIGDTKKDGTKVTF------KPDLEIFGMT 146 (594)
T ss_pred -cccCCcccchHHHHHHhcCceEEEEEeCCc--EEEEEEeCCCeECccceecCCCCCCCcEEEE------EECHHHhCCc
Confidence 158999999999999996 69999998753 48888854 66432 1122344579999994 7999999753
Q ss_pred CchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhCcccc--cCcEEEeecCCcEEEEEEEe
Q 000593 168 SPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDF--SFLDEVNANDGALEISGYIS 245 (1402)
Q Consensus 168 ~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG~e~a--s~LieIe~e~~~~kIeGfIS 245 (1402)
...++..|.+.++.+|+.+|+|+|++.+...... .......++.+.+..+.+.... ...+.+..+..++.++..+.
T Consensus 147 -~~~~~~~i~~rl~~~A~l~pgl~i~l~der~~~~-~~f~~~~Gl~~yv~~~~~~~~~~~~~~i~~~~~~~~~~veval~ 224 (594)
T smart00433 147 -TDDDFELLKRRLRELAFLNKGVKITLNDERSDEE-ETFLFEGGIKDYVELLNKNKELLSPEPTYIEGEKDNIRVEVAFQ 224 (594)
T ss_pred -ccchHHHHHHHHHHHHhcCCCcEEEEeccCCCcc-eEEECCCCHHHHHHHHhCCCCcccCCCeEEEEEeCCcEEEEEEE
Confidence 3677889999999999999999999997532221 1123345566666666543321 11223334445677888887
Q ss_pred CCCCCCCCcceEEEEEcCccccc---------chHHHHHHHHHHhhccCCccccccCcccCCCCCCCCCceEEEEEEcCC
Q 000593 246 SPYDSISVKAFQYVYINSRYVCK---------GPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPH 316 (1402)
Q Consensus 246 ~P~~srsSKd~QFIFVNGRpV~s---------~~I~KlIneL~~sF~sl~p~~~~~~~~~~~r~~~~ryP~fVLnI~cPp 316 (1402)
-.. .....++.|||+.+... ..|.+.|+..++..+.. . . ..-.........++||++.+|.
T Consensus 225 ~~~---~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~~~-k--~----~~i~~~diregl~~vIsvki~~ 294 (594)
T smart00433 225 YTD---GYSENIVSFVNNIATTEGGTHENGFKDALTRVINEYAKKKKKL-K--E----KNIKGEDVREGLTAFISVKIPE 294 (594)
T ss_pred ccC---CCCcEEEEEECCccCCCCCcHHHHHHHHHHHHHHHHHHHhCcc-c--c----CCCChhhHhhCeEEEEEEEEch
Confidence 532 23568999999999874 34555555544322111 0 0 0001112457889999999986
Q ss_pred CcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000593 317 SLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 317 s~VDVNVhPaKtEV~F~dE-~~Il~lI~kaIksfL~~~ 353 (1402)
-.+| ..+|...-=..- ..|-.++.+.+..++..+
T Consensus 295 P~Fe---gQTK~kL~n~~~~~~v~~~v~~~l~~~l~~n 329 (594)
T smart00433 295 PQFE---GQTKEKLGTSEVRFGVEKIVSECLLSFLEEN 329 (594)
T ss_pred heec---ccccccccChhHHHHHHHHHHHHHHHHHHHC
Confidence 5554 234443222211 123344555555555443
No 19
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial. This protein is active as an alpha(2)beta(2) heterotetramer.
Probab=99.84 E-value=1.8e-19 Score=221.27 Aligned_cols=319 Identities=17% Similarity=0.125 Sum_probs=196.9
Q ss_pred cccCChHHHHHHhccccc--cCHHHHHHHHHHcccc---C-CCCeEEEEEecCeeEEEEEeCCCCCCHHH--------HH
Q 000593 4 INRLPEAVRNTVRSGTVL--FDLTRVVEELVFNSVD---A-GATKVFVYVGVCNCYVKVVDDGSGISRDG--------LV 69 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI--~sp~svVKELVENSLD---A-gAT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~ 69 (1402)
|+.|..-=.-+.|-|=+| ++|.++|+|||+||+| | +|+.|.|.|+.+ ..|+|.|||+|||.++ ++
T Consensus 9 i~~L~gle~VRkRPgMYigs~~~~~lv~ElvdNsiDE~~ag~a~~I~V~i~~d-~~I~V~DnGrGIp~~~h~~~g~~~~e 87 (625)
T TIGR01055 9 IEVLDGLEPVRKRPGMYTDTTRPNHLVQEVIDNSVDEALAGFASIIMVILHQD-QSIEVFDNGRGMPVDIHPKEGVSAVE 87 (625)
T ss_pred ceeecccHHhhcCCCCeeCCCCcceeehhhhhcccchhhcCCCCEEEEEEeCC-CeEEEEecCCccCcccccccCCcHHH
Confidence 444443333344444444 3578999999999999 9 699999999877 5799999999999998 88
Q ss_pred Hhh-ccccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeee-ec-cccC-CCC
Q 000593 70 LLG-ERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LG-IDDE-RKD 144 (1402)
Q Consensus 70 ~~~-~rhaTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~-~~-~~~~-~~~ 144 (1402)
.++ .+|+|||+.+. +++ .|.||||+||++++++|+ ++|.|+..+.. |...+.+|.... .. +.+. ...
T Consensus 88 ~v~t~lhagsK~~~~--~~~----~SgG~~GvGls~vnalS~~l~v~~~r~g~~--~~~~~~~G~~~~~~~~i~~~~~~~ 159 (625)
T TIGR01055 88 VILTTLHAGGKFSNK--NYH----FSGGLHGVGISVVNALSKRVKIKVYRQGKL--YSIAFENGAKVTDLISAGTCGKRL 159 (625)
T ss_pred HhhhcccccCCCCCC--cce----ecCCCcchhHHHHHHhcCeEEEEEEECCeE--EEEEEECCeEccccccccccCCCC
Confidence 887 88999999753 444 589999999999999998 99999976643 888888886521 11 1122 345
Q ss_pred CceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCc-eEEEeCCCCCHHHHHHhhh-Cc
Q 000593 145 VGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLISSF-GI 222 (1402)
Q Consensus 145 ~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~le~L~sIF-G~ 222 (1402)
+||+|++ +|+| +++. +..-++..|.+.++++|+.||+|+|+|.+..... ..+... ..+.+.+..+. +.
T Consensus 160 ~GT~V~F------~PD~-~~F~-~~~~e~~~i~~~l~~lA~lnpgi~~~l~der~~~~~~f~~~--~Gi~~yv~~l~~~~ 229 (625)
T TIGR01055 160 TGTSVHF------TPDP-EIFD-SLHFSVSRLYHILRAKAVLCRGVEIEFEDEVNNTKALWNYP--DGLKDYLSEAVNGD 229 (625)
T ss_pred CCeEEEE------EECH-HHCC-CCccCHHHHHHHHHHHHhhCCCcEEEEeecCCCceeEEecC--chHHHHHHHHhcCC
Confidence 9999998 8999 6665 4566788899999999999999999999743221 223332 34455554433 22
Q ss_pred cccc-CcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCcccccc
Q 000593 223 EDFS-FLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDSWKANN 292 (1402)
Q Consensus 223 e~as-~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~---------~I~KlIneL~~sF~sl~p~~~~~ 292 (1402)
.... .........+++.++--+.-. .......++-|||+-+-..+ .|.+.|+...+..+ ..+ + .
T Consensus 230 ~~~~~~~~~~~~~~~~~~ve~al~~~--~~~~~~~~~SFvN~I~T~~GGTHv~gf~~alt~~in~~~~~~~-~~k-k--~ 303 (625)
T TIGR01055 230 NTLPPKPFSGNFEGDDEAVEWALLWL--PEGGELFMESYVNLIPTPQGGTHVNGLRQGLLDALREFCEMRN-NLP-R--G 303 (625)
T ss_pred CCCCCCceEEEEeeCCceEEEEEEEe--cCCCCEEEEEeeccccCCCCCCHHHHHHHHHHHHHHHHHHHhC-ccc-c--c
Confidence 1111 111111112334444333321 11123567899999987643 34444444322111 100 0 0
Q ss_pred CcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCC-chHHHHHHHHHHHHHHhh
Q 000593 293 GFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMK 352 (1402)
Q Consensus 293 ~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~d-E~~Il~lI~kaIksfL~~ 352 (1402)
... ........-++|+++.+|--.+| ..+|...--.. ...+-..+.+.+..+|.+
T Consensus 304 ~~i--~~~diregl~~vVsvki~~P~Fe---gQTK~kL~n~~v~~~v~~~v~~~l~~~l~~ 359 (625)
T TIGR01055 304 VKL--TAEDIWDRCSYVLSIKMQDPQFA---GQTKERLSSRQVAKFVSGVIKDAFDLWLNQ 359 (625)
T ss_pred CCC--CHHHHhhccEEEEEEeccCCccc---CcccccccCHHHHHHHHHHHHHHHHHHHHH
Confidence 000 01112345678888888754433 23444432211 123445555556555543
No 20
>TIGR01059 gyrB DNA gyrase, B subunit. This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
Probab=99.82 E-value=1.6e-18 Score=214.29 Aligned_cols=321 Identities=18% Similarity=0.211 Sum_probs=197.1
Q ss_pred CcccCChHHHHHHhccccc-----cCHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHHH------
Q 000593 3 TINRLPEAVRNTVRSGTVL-----FDLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRDG------ 67 (1402)
Q Consensus 3 ~IkkLpeeVi~qIaSGeVI-----~sp~svVKELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~eD------ 67 (1402)
.|+.|..--.-+.+-|-+| ..+.++|+|||+||+| || |+.|.|.|+.++ .|+|.|||+||+.+-
T Consensus 5 ~i~~L~~lE~vr~RP~mYiGs~~~~gl~~vv~Elv~NaiDe~~ag~a~~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~ki 83 (654)
T TIGR01059 5 SIKVLEGLEAVRKRPGMYIGSTGETGLHHLVYEVVDNSIDEAMAGYCDTINVTINDDG-SVTVEDNGRGIPVDIHPEEGI 83 (654)
T ss_pred HCeEecchHHHhcCCCceeCCCCcchHHhhhHHhhhccccccccCCCCEEEEEEeCCC-cEEEEEeCCCcCccccCcCCC
Confidence 4666665555566666666 6678999999999999 99 999999998665 499999999999861
Q ss_pred --HHHh-hccccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeee-eccccCC
Q 000593 68 --LVLL-GERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDER 142 (1402)
Q Consensus 68 --L~~~-~~rhaTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~-~~~~~~~ 142 (1402)
++.+ +..|++||+.. +.+. .|.||||+||++++++|+ ++|+|++.+. .|...+.+|.... .......
T Consensus 84 ~~~e~i~~~l~ag~kf~~--~~~k----~s~G~~G~gl~~inalS~~l~v~~~~~g~--~~~~~~~~G~~~~~l~~~~~~ 155 (654)
T TIGR01059 84 SAVEVVLTVLHAGGKFDK--DSYK----VSGGLHGVGVSVVNALSEWLEVTVFRDGK--IYRQEFERGIPLGPLEVVGET 155 (654)
T ss_pred CchHHheeeecccCccCC--Ccce----ecCCccchhHHHHHHhcCeEEEEEEECCe--EEEEEEeCCCcccCceeccCC
Confidence 1222 23366666542 2222 589999999999999998 9999997654 3888888876432 1123345
Q ss_pred CCCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCC---CceEEEeCCCCCHHHHHHhh
Q 000593 143 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMES---EDELLCTCSSSSPLALLISS 219 (1402)
Q Consensus 143 ~~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~---~k~ll~t~~sss~le~L~sI 219 (1402)
...||+|+ |++.|+ +|. +...+...|.+.|+++|+.+|+|+|++.+... ....+.+.+ .+.+.+..+
T Consensus 156 ~~~GT~V~----F~pdp~--~F~--~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~~--Gl~~yv~~l 225 (654)
T TIGR01059 156 KKTGTTVR----FWPDPE--IFE--TTEFDFDILAKRLRELAFLNSGVKISLEDERDGKGKSVTFHYEG--GIKSFVKYL 225 (654)
T ss_pred CCCCcEEE----EEEChH--HhC--CcccCHHHHHHHHHHhhccCCCeEEEEEeecCCCCceeEEEcCC--cHHHHHHHH
Confidence 67999999 777787 565 35667888999999999999999999997531 123344433 344444333
Q ss_pred hCc-ccc-cCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCcc
Q 000593 220 FGI-EDF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDSW 288 (1402)
Q Consensus 220 FG~-e~a-s~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~---------~I~KlIneL~~sF~sl~p~ 288 (1402)
-.. ... .....++.+.+++.++..+.-. ......++-|||+-+-..+ .|.+.|+...+..+ +..
T Consensus 226 ~~~~~~l~~~~i~~~~~~~~~~veva~~~~---~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~i~~~~~~~~-l~K- 300 (654)
T TIGR01059 226 NRNKEPLHEEIIYIKGEKEGIEVEVALQWN---DGYSENILSFVNNINTREGGTHLEGFRSALTRVINSYAKNNK-LLK- 300 (654)
T ss_pred hcCCCcCCCCCeEEEecccCeEEEEEEEec---CCCceeEEEEECcccCCCCCcHHHHHHHHHHHHHHHHHHHhC-ccc-
Confidence 211 111 1223344433456666666532 1234557899999876532 23344443222111 100
Q ss_pred ccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000593 289 KANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 289 ~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE-~~Il~lI~kaIksfL~~~ 353 (1402)
...... ........-++|+++.++.-.+| ..+|...-=..- ..+-.++.+.+..+|.++
T Consensus 301 -~~~~~i--~~~diregl~~vvsv~i~~P~F~---gQTK~kL~~~~v~~~v~~~v~~~l~~~l~~n 360 (654)
T TIGR01059 301 -ESKPNL--TGEDIREGLTAVISVKVPDPQFE---GQTKTKLGNSEVRSIVESLVYEKLTEFFEEN 360 (654)
T ss_pred -ccCCCC--CHHHHhhccEEEEEEecCCCccc---CcccccccChhHHHHHHHHHHHHHHHHHHhC
Confidence 000000 11112345678888888754443 244544332211 224455566666666543
No 21
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Probab=99.81 E-value=2e-18 Score=212.55 Aligned_cols=318 Identities=18% Similarity=0.169 Sum_probs=204.2
Q ss_pred cccCChHHHHHHhcccc-----ccCHHHHHHHHHHccccC----CCCeEEEEEecCeeEEEEEeCCCCCCHHHHHH----
Q 000593 4 INRLPEAVRNTVRSGTV-----LFDLTRVVEELVFNSVDA----GATKVFVYVGVCNCYVKVVDDGSGISRDGLVL---- 70 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeV-----I~sp~svVKELVENSLDA----gAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~---- 70 (1402)
|+.|..-=.-+.+-|-+ ...|.++|+|||+||+|| +|+.|.|.|+.++ .|+|.|||.|||.+..+.
T Consensus 13 i~~L~~lE~VrkRP~mYiGs~~~~gl~~lv~EivdNaiDe~~ag~a~~I~V~i~~dg-~I~V~DnGrGIP~~~~~~~~~~ 91 (631)
T PRK05559 13 IEVLEGLEPVRKRPGMYIGSTDTRGLHHLVQEVIDNSVDEALAGHGKRIEVTLHADG-SVSVRDNGRGIPVGIHPEEGKS 91 (631)
T ss_pred CeeccchHHHhcCCCceeCCCCCchhhhhhhhhhccccchhhcCCCCEEEEEEeCCC-cEEEEEcCCCCCcccccccCCc
Confidence 55554333334444444 478899999999999999 8999999998765 799999999999998887
Q ss_pred ----hhcc-ccCCCCCCcccccccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeee-ec-cccCC
Q 000593 71 ----LGER-HATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-LG-IDDER 142 (1402)
Q Consensus 71 ----~~~r-haTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~-~~-~~~~~ 142 (1402)
++.+ |+|||+.. +.+. .+.||+|+|+++++++| .++|+|+..+. .|...+.+|.... +. .....
T Consensus 92 ~~E~v~t~lhagsKf~~--~~yk----~SgGl~GvGls~vNalS~~l~V~s~r~g~--~~~~~f~~G~~~~~l~~~~~~~ 163 (631)
T PRK05559 92 GVEVILTKLHAGGKFSN--KAYK----FSGGLHGVGVSVVNALSSRLEVEVKRDGK--VYRQRFEGGDPVGPLEVVGTAG 163 (631)
T ss_pred chheeeeeccccCccCC--cccc----ccCcccccchhhhhhheeeEEEEEEeCCe--EEEEEEECCcCccCcccccccc
Confidence 7777 99999974 3443 58999999999999996 69999997543 3888888775431 11 12222
Q ss_pred -CCCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCceEEEeCCCCCHHHHHHhhhC
Q 000593 143 -KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFG 221 (1402)
Q Consensus 143 -~~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k~ll~t~~sss~le~L~sIFG 221 (1402)
..+||+|++ +|+|++| . +...+...|.+.|+++|+.+|+|+|++.+.. .+..+.+. .++.+.+..++.
T Consensus 164 ~~~~GT~V~f------~PD~~iF-~-~~~~~~~~i~~~l~~~A~lnpgl~i~l~d~~-~~~~f~~~--~gl~~~v~~~~~ 232 (631)
T PRK05559 164 KRKTGTRVRF------WPDPKIF-D-SPKFSPERLKERLRSKAFLLPGLTITLNDER-ERQTFHYE--NGLKDYLAELNE 232 (631)
T ss_pred CCCCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHHhhCCCeEEEEEeCC-ceEEEECC--ccHHHHHHHHhC
Confidence 579999999 7999988 3 4556678899999999999999999999753 23345444 456777777764
Q ss_pred cc-ccc-C-cEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCccc
Q 000593 222 IE-DFS-F-LDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDSWK 289 (1402)
Q Consensus 222 ~e-~as-~-LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~---------~I~KlIneL~~sF~sl~p~~ 289 (1402)
.. ... . .+.++.+.++..++..+.-. ......++-|||+-+-..+ .|.+.|+...+.. .+..
T Consensus 233 ~~~~i~~~~~i~~~~~~~~~~veval~~~---~~~~~~~~SFvN~I~T~~GGTHv~g~~~al~~~in~~~~~~-~l~k-- 306 (631)
T PRK05559 233 GKETLPEEFVGSFEGEAEGEAVEWALQWT---DEGGENIESYVNLIPTPQGGTHENGFREGLLKAVREFAEKR-NLLP-- 306 (631)
T ss_pred CCCccCCCCceEEeeeeccceEEEEEEec---CCCCeEEEEEECcccCCCCCCHHHHHHHHHHHHHHHHHHHh-Cccc--
Confidence 32 111 1 22333333345555555421 1123478999999987642 3444444433221 1111
Q ss_pred cccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCC-chHHHHHHHHHHHHHHhhh
Q 000593 290 ANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 290 ~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~d-E~~Il~lI~kaIksfL~~~ 353 (1402)
..... ........-++||++.+|--.+| ..+|...-=.. ...|-.++.+.+..+|.++
T Consensus 307 -~~~~l--~~~diregl~~vvsvki~~P~Fe---gQTK~kL~n~~v~~~v~~~v~~~l~~~l~~n 365 (631)
T PRK05559 307 -KGKKL--EGEDVREGLAAVLSVKIPEPQFE---GQTKEKLGSREARRFVSGVVKDAFDLWLNQN 365 (631)
T ss_pred -cccCC--ChhhHhhceEEEEEEEcCCCccc---CcccccccCHhHhhhhhhHHHHHHHHHHHHC
Confidence 00000 01112345678888888754443 23444332221 1234456666666666543
No 22
>PRK05644 gyrB DNA gyrase subunit B; Validated
Probab=99.81 E-value=2.3e-18 Score=212.04 Aligned_cols=243 Identities=18% Similarity=0.185 Sum_probs=164.5
Q ss_pred cccCChHHHHHHhcccccc-----CHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHHH-------
Q 000593 4 INRLPEAVRNTVRSGTVLF-----DLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRDG------- 67 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI~-----sp~svVKELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~eD------- 67 (1402)
|+.|..-=.-+.+-|-+|- .+.++|+|||+||+| || |+.|.|.|+.++ .|+|.|||+|||.+.
T Consensus 13 i~~L~~lE~Vr~RPgMYiGs~~~~gl~~~v~ElvdNaiDe~~ag~a~~I~V~i~~~g-~I~V~DnG~GIp~~~h~~~ki~ 91 (638)
T PRK05644 13 IQVLEGLEAVRKRPGMYIGSTGERGLHHLVYEIVDNSIDEALAGYCDHIEVTINEDG-SITVTDNGRGIPVDIHPKTGKP 91 (638)
T ss_pred CeEecchHHHhcCCCceECCCChhhHHhhhHHhhhcccccccCCCCCEEEEEEeCCC-cEEEEEeCccccCCccCCCCCC
Confidence 5555433333445555554 457899999999999 99 999999998765 799999999999862
Q ss_pred -HHHh-hccccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeee-eccccCCC
Q 000593 68 -LVLL-GERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDERK 143 (1402)
Q Consensus 68 -L~~~-~~rhaTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~-~~~~~~~~ 143 (1402)
++.+ +..|++||+.. +.+. .|.||||+||++++++|+ ++|+|+..+. +|...+.+|.... ........
T Consensus 92 ~~e~i~~~lhag~kfd~--~~yk----~s~G~~G~Gls~vnalS~~~~v~t~r~g~--~~~~~~~~G~~~~~~~~~~~~~ 163 (638)
T PRK05644 92 AVEVVLTVLHAGGKFGG--GGYK----VSGGLHGVGVSVVNALSTWLEVEVKRDGK--IYYQEYERGVPVTPLEVIGETD 163 (638)
T ss_pred chHHheeeecccCccCC--Cccc----ccCCccccchhhhhheeceEEEEEEeCCc--EEEEEEECCeEccCccccCCcC
Confidence 2233 33467777643 2222 489999999999999998 9999987653 7899998887541 11111225
Q ss_pred CCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCC---ceEEEeCCCCCHHHHHHhhh
Q 000593 144 DVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE---DELLCTCSSSSPLALLISSF 220 (1402)
Q Consensus 144 ~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~---k~ll~t~~sss~le~L~sIF 220 (1402)
..||+|++ +|+|++| . +...+...|.+.|+.+|+++|+|+|+|.+.... ...+... .++.+.+..+.
T Consensus 164 ~~GT~I~F------~Pd~~~F-~-~~~~e~~~i~~rl~~~A~l~pgl~i~l~~er~~~~~~~~f~~~--~Gl~dyv~~l~ 233 (638)
T PRK05644 164 ETGTTVTF------KPDPEIF-E-TTEFDYDTLATRLRELAFLNKGLKITLTDEREGEEKEETFHYE--GGIKEYVEYLN 233 (638)
T ss_pred CCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHHhhCCCcEEEEEeccCCCcceeEEEcC--CCHHHHHHHHh
Confidence 79999995 8999998 4 456678889999999999999999999975311 2234433 34555554333
Q ss_pred Ccc-cc-cCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCccccc
Q 000593 221 GIE-DF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 268 (1402)
Q Consensus 221 G~e-~a-s~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s 268 (1402)
... .. ...+.++...+++.++..+.-. ......++-|||+-+-..
T Consensus 234 ~~~~~~~~~~i~~~~~~~~~~veval~~~---~~~~~~~~SFvN~I~T~~ 280 (638)
T PRK05644 234 RNKEPLHEEPIYFEGEKDGIEVEVAMQYN---DGYSENILSFANNINTHE 280 (638)
T ss_pred cCCCcCCCCCeEEEeeccCeEEEEEEEec---CCCceEEEEEECcccCCC
Confidence 221 11 1123333333445666555432 122456789999998764
No 23
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Probab=99.78 E-value=3.3e-18 Score=212.43 Aligned_cols=242 Identities=18% Similarity=0.175 Sum_probs=168.1
Q ss_pred cccCChHHHHHHhccccc------cCHHHHHHHHHHcccc---CC-CCeEEEEEecCeeEEEEEeCCCCCCHH-------
Q 000593 4 INRLPEAVRNTVRSGTVL------FDLTRVVEELVFNSVD---AG-ATKVFVYVGVCNCYVKVVDDGSGISRD------- 66 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI------~sp~svVKELVENSLD---Ag-AT~I~V~Id~g~~~I~V~DNG~GIs~e------- 66 (1402)
|+.|..--.-+.|-|-+| ..+.++|+|||+||+| || |+.|.|.|+.++ +|+|.|||+|||.+
T Consensus 12 i~vL~gle~VRkRPgMYIGst~~~~GLhhlv~EivdNaiDE~~AG~a~~I~V~i~~dg-sIsV~DnGrGIPvd~h~~~g~ 90 (756)
T PRK14939 12 IKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVYEVVDNAIDEALAGHCDDITVTIHADG-SVSVSDNGRGIPTDIHPEEGV 90 (756)
T ss_pred CeEecccHHHhcCCCCeeCCCCCCcchhhhhhHhhcccccccccCCCCEEEEEEcCCC-eEEEEEcCCcccCCcccccCC
Confidence 555554333344555554 4578999999999999 99 999999998765 79999999999987
Q ss_pred ---HHHHhhccccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeee-eccccC
Q 000593 67 ---GLVLLGERHATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLY-LGIDDE 141 (1402)
Q Consensus 67 ---DL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~-~~~~~~ 141 (1402)
++.. +..|+|||+.+ |.++ -+.||+|+|+++++++|+ ++|+++..+. .|...+..|.... ......
T Consensus 91 ~~~Elvl-t~lhAggKfd~--~~yk----vSgGlhGvG~svvNAlS~~l~v~v~r~gk--~~~q~f~~G~~~~~l~~~g~ 161 (756)
T PRK14939 91 SAAEVIM-TVLHAGGKFDQ--NSYK----VSGGLHGVGVSVVNALSEWLELTIRRDGK--IHEQEFEHGVPVAPLKVVGE 161 (756)
T ss_pred chhhhee-eeecccCCCCC--Cccc----ccCCccCccceEeehccCeEEEEEEeCCe--EEEEEEecCccccCccccCC
Confidence 4443 37799999975 6665 388999999999999997 9999997654 3888888776432 111112
Q ss_pred CCCCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCc-eEEEeCCCCCHHHHHHhhh
Q 000593 142 RKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLISSF 220 (1402)
Q Consensus 142 ~~~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~le~L~sIF 220 (1402)
....||+|++ +|+|++| . +..-++..|.+.|+.+|+.+|+|+|++.+...+. ..+...+ .+.+.+..+-
T Consensus 162 ~~~~GT~V~F------~PD~~iF-~-~~~~~~~~i~~rl~elA~lnpgl~i~l~der~~~~~~f~~eg--Gi~~fv~~l~ 231 (756)
T PRK14939 162 TDKTGTEVRF------WPSPEIF-E-NTEFDYDILAKRLRELAFLNSGVRIRLKDERDGKEEEFHYEG--GIKAFVEYLN 231 (756)
T ss_pred cCCCCcEEEE------EECHHHc-C-CcccCHHHHHHHHHHHhhcCCCCEEEEeccCCCceeEEEeCC--hHHHHHHHHh
Confidence 2579999999 8999999 3 4566778899999999999999999999753222 2344332 3333333221
Q ss_pred Cc-c-cccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCccccc
Q 000593 221 GI-E-DFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 268 (1402)
Q Consensus 221 G~-e-~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s 268 (1402)
.. . .....+.+..+.+++.++..+.-. ......++-|||+-+-..
T Consensus 232 ~~~~~~~~~~i~~~~~~~~~~veval~~~---~~~~e~~~SFvN~I~T~~ 278 (756)
T PRK14939 232 RNKTPLHPNIFYFSGEKDGIGVEVALQWN---DSYQENVLCFTNNIPQRD 278 (756)
T ss_pred cCCCcCCCCceEEEeeeCCeEEEEEEEEc---CCCceeEEEEECcccCCC
Confidence 11 1 111223344444556666555531 122456789999988654
No 24
>PRK05218 heat shock protein 90; Provisional
Probab=99.77 E-value=1.1e-17 Score=205.59 Aligned_cols=235 Identities=17% Similarity=0.205 Sum_probs=166.9
Q ss_pred HHHHHhccccccCHHHHHHHHHHccccC----------------CCC--eEEEEEecCeeEEEEEeCCCCCCHHHHHHhh
Q 000593 11 VRNTVRSGTVLFDLTRVVEELVFNSVDA----------------GAT--KVFVYVGVCNCYVKVVDDGSGISRDGLVLLG 72 (1402)
Q Consensus 11 Vi~qIaSGeVI~sp~svVKELVENSLDA----------------gAT--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~ 72 (1402)
+...|.. ....++..+++|||+||.|| ++. .|.|.++.++..|+|.|||+||+.+|+...+
T Consensus 15 ll~ll~~-~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~~~~~~~~I~I~~d~~~~~i~I~DnG~GMt~eel~~~l 93 (613)
T PRK05218 15 LLHLMIH-SLYSNKEIFLRELISNASDAIDKLRFEALTDPALYEGDGDLKIRISFDKEARTLTISDNGIGMTREEVIENL 93 (613)
T ss_pred HHHHHhh-hhcCCchHHHHHHHhCHHHHHHHHHHHhccCccccCCCCCcEEEEEEcCCCCeEEEEECCCCCCHHHHHHHH
Confidence 4445554 46688999999999999999 333 5777777777679999999999999999999
Q ss_pred ccccCC-------CCCCcccccccCCCcccCccchhHHHHhhcc-cEEEEEEecC-CCceEEEEEeCceeeeeccccC-C
Q 000593 73 ERHATS-------KLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHG-RPNGYRKVMKGSKCLYLGIDDE-R 142 (1402)
Q Consensus 73 ~rhaTS-------Ki~s~eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~-~~~g~~i~~~~gk~~~~~~~~~-~ 142 (1402)
.++++| |+....+- ....+|..|.|++|+..++ +|+|+||..+ ...++.+..+++..... .+. .
T Consensus 94 ~~ia~Sg~~~f~~k~~~~~~~----~~~~iG~fGiGf~S~f~va~~v~V~Sr~~~~~~~~~~w~~~g~~~~~i--~~~~~ 167 (613)
T PRK05218 94 GTIAKSGTKEFLEKLKGDQKK----DSQLIGQFGVGFYSAFMVADKVTVITRSAGPAAEAVRWESDGEGEYTI--EEIEK 167 (613)
T ss_pred HhhccccchhHHHHhhccccc----ccccccccCcCchhhhhccCEEEEEEcCCCCCCceEEEEEeCCceeEE--eECCC
Confidence 999998 33211100 1146788888888988887 7999999977 66788888887654322 222 2
Q ss_pred CCCceEEEEcccccChhHHHHHhhcCchHH---HHHHHHHHHHHH--hhCCCeEE-----EEEEcCCCceEEEeCCCCCH
Q 000593 143 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKV---LHSVKKCVLRIA--LVHPKVSF-----KFIDMESEDELLCTCSSSSP 212 (1402)
Q Consensus 143 ~~~GTTVtV~dLF~NlPVRRK~L~s~~kke---l~~Ik~~L~~yA--Li~P~IsF-----sL~~~~~~k~ll~t~~sss~ 212 (1402)
..+||+|+|. ++. ...+ ..+|+++|..|| +.+| |.| .+.+ ..+.+|... ....
T Consensus 168 ~~~GT~I~l~------------Lk~-~~~e~~e~~~i~~li~kys~~l~~P-I~~~~~~~~~in--~~~~~w~~~-~~~i 230 (613)
T PRK05218 168 EERGTEITLH------------LKE-DEDEFLDEWRIRSIIKKYSDFIPVP-IKLEKEEEETIN--SASALWTRS-KSEI 230 (613)
T ss_pred CCCCcEEEEE------------ECc-chhhhcCHHHHHHHHHHHHhcCCCC-EEEecccceeec--CCccceecC-Cccc
Confidence 4799999994 221 1222 367999999999 8788 777 2332 334445443 3355
Q ss_pred HHHHHhhhCccc----ccCcEEEeec-CCcEEEEEEEeCCCCC------CCCcceEEEEEcCcccccc
Q 000593 213 LALLISSFGIED----FSFLDEVNAN-DGALEISGYISSPYDS------ISVKAFQYVYINSRYVCKG 269 (1402)
Q Consensus 213 le~L~sIFG~e~----as~LieIe~e-~~~~kIeGfIS~P~~s------rsSKd~QFIFVNGRpV~s~ 269 (1402)
.+.....|+... ...|..+... .+.+.+.|++..|... +..+..+.+|||||+|.+.
T Consensus 231 ~~~~~~~fy~~~~~~~~~pl~~i~~~~e~~~~~~gll~iP~~~~~~~~~~~~~~~~~lyvn~v~I~d~ 298 (613)
T PRK05218 231 TDEEYKEFYKHLAHDFDDPLFWIHNNVEGPFEYTGLLYIPKKAPFDLFNRDRKGGLKLYVKRVFIMDD 298 (613)
T ss_pred cHHHHHHHhhhhcccccCCcEEEEcccCCceEEEEEEEeCCCCccchhhhcccccEEEEECcEEeeCc
Confidence 556666655544 3457788753 4569999999988654 4567889999999999763
No 25
>TIGR01052 top6b DNA topoisomerase VI, B subunit. This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
Probab=99.77 E-value=2.7e-18 Score=204.61 Aligned_cols=159 Identities=25% Similarity=0.296 Sum_probs=127.4
Q ss_pred ccCHHHHHHHHHHccccCCCC-----eEEEEEec-C--eeEEEEEeCCCCCCHHHHHHhhcc-ccCCCCCCcccccccCC
Q 000593 21 LFDLTRVVEELVFNSVDAGAT-----KVFVYVGV-C--NCYVKVVDDGSGISRDGLVLLGER-HATSKLGHLADMDDATG 91 (1402)
Q Consensus 21 I~sp~svVKELVENSLDAgAT-----~I~V~Id~-g--~~~I~V~DNG~GIs~eDL~~~~~r-haTSKi~s~eDL~~l~g 91 (1402)
+..+.++|+|||+||+||+++ .|.|.+.. + ...|+|.|||.||++++++.+|.+ |+|||+.+.
T Consensus 26 ~~~L~~VlkELVeNAIDA~~~~g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~~tsK~~~~-------- 97 (488)
T TIGR01052 26 IRSLTTVIHELVTNSLDACEEAGILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKMLAGSKFHRI-------- 97 (488)
T ss_pred HHHHHHHHHHHHHHHHHHhhccCCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhccccCccccc--------
Confidence 456789999999999999886 68888853 2 247999999999999999999998 899998631
Q ss_pred CcccCccchhHHHHhhccc------EEEEEEecCCCceEEEEEe------CceeeeeccccCCCCCceEEEEcccccChh
Q 000593 92 IGTFGFRGEALASISDVSL------LEIITKAHGRPNGYRKVMK------GSKCLYLGIDDERKDVGTTVVSRDLFYNQP 159 (1402)
Q Consensus 92 I~T~GFRGEALaSIsaVS~------LeI~SRt~~~~~g~~i~~~------~gk~~~~~~~~~~~~~GTTVtV~dLF~NlP 159 (1402)
+.++|++|+||+++..+|+ ++|+|++.+...++.+.+. +|+...........++||+|+|+ |+|+|
T Consensus 98 ~~s~G~~GlGLs~~~~isq~~~G~~i~V~S~~~g~~~~~~~~~~id~~~n~G~i~~~~~~~~~~~~GT~V~v~--f~~~~ 175 (488)
T TIGR01052 98 IQSRGQQGIGISGAVLYSQMTTGKPVKVISSTGGEIYVYKMKLKIDVQKNEGEIVEKGEWNKPGWRGTRIELE--FKGVS 175 (488)
T ss_pred cccCCCccEehhHHHHHHHHcCCceEEEEEecCCceEEEEEEEEecccccCCeecceeecCCCCCCceEEEEE--ECCce
Confidence 2588999999999999986 8999999887777887773 56543211111112479999999 99999
Q ss_pred HHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcC
Q 000593 160 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME 198 (1402)
Q Consensus 160 VRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~ 198 (1402)
+|++. .+|.++|+++|+++|+++|+|.+.+
T Consensus 176 ~r~~k---------~~i~e~l~~~Al~nP~~~i~l~~~~ 205 (488)
T TIGR01052 176 YRRSK---------QGVYEYLRRTAVANPHAKIVLVDPD 205 (488)
T ss_pred eeccH---------HHHHHHHHHHHhhCCCeEEEEEeCC
Confidence 98421 5788999999999999999999743
No 26
>PRK04184 DNA topoisomerase VI subunit B; Validated
Probab=99.64 E-value=2.7e-15 Score=180.80 Aligned_cols=154 Identities=23% Similarity=0.209 Sum_probs=118.7
Q ss_pred HHHHHHHHHHccccCCCC-----eEEEEEec-----CeeEEEEEeCCCCCCHHHHHHhhccc-cCCCCCCcccccccCCC
Q 000593 24 LTRVVEELVFNSVDAGAT-----KVFVYVGV-----CNCYVKVVDDGSGISRDGLVLLGERH-ATSKLGHLADMDDATGI 92 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT-----~I~V~Id~-----g~~~I~V~DNG~GIs~eDL~~~~~rh-aTSKi~s~eDL~~l~gI 92 (1402)
+.++|+|||+||+||+++ .|.|.+.. +...|.|.|||.||++++++.+|.++ +|||+... .
T Consensus 37 L~qVLkNLIeNAIDa~~~~gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f~~~SK~~~~--------~ 108 (535)
T PRK04184 37 LYTTVKELVDNSLDACEEAGILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKLLYGSKFHNL--------R 108 (535)
T ss_pred HHHHHHHHHHHHHHHhhhcCCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhhhcccccccc--------c
Confidence 589999999999999876 57777742 23689999999999999999999984 88887532 1
Q ss_pred cccCccchhHHHHhhccc------EEEEEEecCCCceEEEEEe------CceeeeeccccCCCCCceEEEEcccccChhH
Q 000593 93 GTFGFRGEALASISDVSL------LEIITKAHGRPNGYRKVMK------GSKCLYLGIDDERKDVGTTVVSRDLFYNQPV 160 (1402)
Q Consensus 93 ~T~GFRGEALaSIsaVS~------LeI~SRt~~~~~g~~i~~~------~gk~~~~~~~~~~~~~GTTVtV~dLF~NlPV 160 (1402)
.+.|++|+||+++..+++ ++|.|++.++..++.+.+. .+............++||+|+|. |+.++|.
T Consensus 109 ~s~G~~GLGLsiv~~isq~~~G~~I~V~S~~~~g~~~~~~~l~id~~kn~g~i~~~~~~~~~~~~GT~V~V~-l~~~~~~ 187 (535)
T PRK04184 109 QSRGQQGIGISAAVLYAQMTTGKPVRVISSTGGSKKAYYFELKIDTKKNEPIILEREEVDWDRWHGTRVELE-IEGDWYR 187 (535)
T ss_pred cCCCCCCcchHHHHHHHHHhcCCcEEEEEecCCCceEEEEEEEecccccCCeeccccccCCCCCCCEEEEEE-ECCcChh
Confidence 478999999998877753 7899988776556666653 33322111112356899999998 8888875
Q ss_pred HHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEc
Q 000593 161 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDM 197 (1402)
Q Consensus 161 RRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~ 197 (1402)
| ...|.++|+++|+++|+++|++.+.
T Consensus 188 ~-----------~~~I~e~i~r~Al~nP~~~~~l~~~ 213 (535)
T PRK04184 188 A-----------KQRIYEYLKRTAIVNPHARITFKDP 213 (535)
T ss_pred h-----------HHHHHHHHHHHHHhCCCeEEEEEeC
Confidence 4 3467789999999999999999974
No 27
>cd00329 TopoII_MutL_Trans MutL_Trans: transducer domain, having a ribosomal S5 domain 2-like fold, conserved in the C-terminal domain of type II DNA topoisomerases (Topo II) and DNA mismatch repair (MutL/MLH1/PMS2) proteins. This transducer domain is homologous to the second domain of the DNA gyrase B subunit, which is known to be important in nucleotide hydrolysis and the transduction of structural signals from ATP-binding site to the DNA breakage/reunion regions of the enzymes. The GyrB dimerizes in response to ATP binding, and is homologous to the N-terminal half of eukaryotic Topo II and the ATPase fragment of MutL. Type II DNA topoisomerases catalyze the ATP-dependent transport of one DNA duplex through another, in the process generating transient double strand breaks via covalent attachments to both DNA strands at the 5' positions. Included in this group are proteins similar to human MLH1 and PMS2. MLH1 forms a heterodimer with PMS2 which functions in meiosis and in DNA mismatch
Probab=99.48 E-value=1.2e-13 Score=131.18 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=89.1
Q ss_pred HHHHHhhhCcccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccc-cchHHHHHHHHHHhhccCCccccc
Q 000593 213 LALLISSFGIEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVC-KGPIHKLLNHLAASFDCSDSWKAN 291 (1402)
Q Consensus 213 le~L~sIFG~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~-s~~I~KlIneL~~sF~sl~p~~~~ 291 (1402)
.+++..++|......++.++.+...++|+|+++.|...+..+..||+|||||++. .+.+.++|+.++..+-.
T Consensus 2 ~~~i~~~~g~~~~~~~~~~~~~~~~~~v~g~l~~~~~~~~~~~~~~~fvN~r~v~~~~~~~~~i~~~~~~~~~------- 74 (107)
T cd00329 2 KDRLAEILGDKVADKLIYVEGESDGFRVEGAISYPDSGRSSKDRQFSFVNGRPVREGGTHVKAVREAYTRALN------- 74 (107)
T ss_pred HhHHHHHhCHHhHhhcEEEeccCCCEEEEEEEeCCccCcccCCcEEEEEcCeEEcCCHHHHHHHHHHHHHHhc-------
Confidence 4678899998887788899888888999999999877677889999999999999 88899998876653321
Q ss_pred cCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEE
Q 000593 292 NGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVV 331 (1402)
Q Consensus 292 ~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~ 331 (1402)
+....++|+++|+|.||++.+||||||+|++|+
T Consensus 75 -------~~~~~~~p~~vl~i~~~~~~~d~nv~p~K~~v~ 107 (107)
T cd00329 75 -------GDDVRRYPVAVLSLKIPPSLVDVNVHPTKEEVR 107 (107)
T ss_pred -------ccCCCCCCEEEEEEEeChHHeeeCCCCCccccC
Confidence 112468999999999999999999999999984
No 28
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B ....
Probab=99.36 E-value=2.9e-13 Score=137.39 Aligned_cols=100 Identities=29% Similarity=0.358 Sum_probs=75.6
Q ss_pred CHHHHHHHHHHccccCCCCeEEEEEec---CeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 23 DLTRVVEELVFNSVDAGATKVFVYVGV---CNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 23 sp~svVKELVENSLDAgAT~I~V~Id~---g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
++..||+|||+||+||+|+.|.|.|+. +...|.|.|||.||+.++|..++..+.++|... .+ ..++|.+|
T Consensus 2 ~~~~al~ElI~Ns~DA~a~~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~~~~~g~s~k~~~-~~------~~~~G~~G 74 (137)
T PF13589_consen 2 SPEDALRELIDNSIDAGATNIKISIDEDKKGERYIVIEDNGEGMSREDLESFFRIGRSSKKSE-KD------RQSIGRFG 74 (137)
T ss_dssp SCTHHHHHHHHHHHHHHHHHEEEEEEEETTTTTEEEEEESSS---HHHHHHHTTCHHTHHHHH-HH------GGGGGGGT
T ss_pred cHHHHHHHHHHHHHHccCCEEEEEEEcCCCCCcEEEEEECCcCCCHHHHHHhccccCCCCCch-hh------hhcCCCcc
Confidence 457899999999999999999999964 347899999999999999999877777776421 11 14677787
Q ss_pred hh--HHHHhhcccEEEEEEecCCCceEEEEEe
Q 000593 100 EA--LASISDVSLLEIITKAHGRPNGYRKVMK 129 (1402)
Q Consensus 100 EA--LaSIsaVS~LeI~SRt~~~~~g~~i~~~ 129 (1402)
.+ +|.++....++|+|++.+....+.+.+.
T Consensus 75 ~G~k~A~~~~~~~~~v~S~~~~~~~~~~~~~~ 106 (137)
T PF13589_consen 75 IGLKLAIFSLGDRVEVISKTNGESFTYTIDYD 106 (137)
T ss_dssp SGCGGGGGGTEEEEEEEEESTTSSSEEEEEEE
T ss_pred eEHHHHHHHhcCEEEEEEEECCCCcEEEEEEe
Confidence 77 4455545679999999988877776554
No 29
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Probab=99.35 E-value=5.6e-12 Score=146.92 Aligned_cols=165 Identities=20% Similarity=0.195 Sum_probs=114.3
Q ss_pred cccCHHHHHHHHHHccccCCCC-----eEEEEEec---CeeEEEEEeCCCCCCHHHHHHhhcc-ccCCCCCCcccccccC
Q 000593 20 VLFDLTRVVEELVFNSVDAGAT-----KVFVYVGV---CNCYVKVVDDGSGISRDGLVLLGER-HATSKLGHLADMDDAT 90 (1402)
Q Consensus 20 VI~sp~svVKELVENSLDAgAT-----~I~V~Id~---g~~~I~V~DNG~GIs~eDL~~~~~r-haTSKi~s~eDL~~l~ 90 (1402)
-+-++.++|+|||+|||||.-. .|.|.|+. +-.++.|+|||.||+++.++.+|.+ .++||++...+- .
T Consensus 33 p~RsL~~tv~ElV~NSLDA~eeaGILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~LygSKfh~~~Qs---R 109 (538)
T COG1389 33 PIRSLTTTVHELVTNSLDACEEAGILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYGSKFHRNIQS---R 109 (538)
T ss_pred chhHHHHHHHHHHhcchhhHHhcCCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhccchhhhhhhc---c
Confidence 3567899999999999999633 57777753 3468999999999999999999988 899999532111 1
Q ss_pred CCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEE--EeC----ceeeee-ccccCCCCCceEEEEcccccChhHHH
Q 000593 91 GIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKV--MKG----SKCLYL-GIDDERKDVGTTVVSRDLFYNQPVRR 162 (1402)
Q Consensus 91 gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~--~~~----gk~~~~-~~~~~~~~~GTTVtV~dLF~NlPVRR 162 (1402)
|...+|..|..|+|....++ ++|.|+|.++..++... ++- +.++.- .......++||+|++. |=.++..++
T Consensus 110 GqqGiGis~avLysQmTtGkPv~V~s~T~~s~~~~~~~l~id~~kNEp~Iv~r~~~~~~~~~hGT~Vel~-~~~~~~~~~ 188 (538)
T COG1389 110 GQQGIGISAAVLYSQMTTGKPVRVISSTGDSGTAYEYELKIDVQKNEPEIVERGEVENPGGWHGTRVELE-LKGVWYRAK 188 (538)
T ss_pred ccccccHHHHHHHHHhcCCCceEEEecCCCCcceEEEEEEecCCCCcchhhhcccccCCCCCCceEEEEE-ecccchhhc
Confidence 23455566667777776665 99999998866655443 331 212111 1223345899999996 333333332
Q ss_pred HHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcC
Q 000593 163 KYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDME 198 (1402)
Q Consensus 163 K~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~ 198 (1402)
++ -+.+.|++.|+++|+..|.|.+.+
T Consensus 189 ~q----------gi~eYlkrtaiinPhA~I~l~dPd 214 (538)
T COG1389 189 RQ----------GIYEYLKRTAIINPHARIVLKDPD 214 (538)
T ss_pred cc----------CHHHHHHHHhhcCCceEEEEECCC
Confidence 21 256788999999999999998643
No 30
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive. Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
Probab=99.29 E-value=1.1e-10 Score=144.82 Aligned_cols=244 Identities=20% Similarity=0.179 Sum_probs=156.8
Q ss_pred CcccCChHHHHHHhccccc-----cCHHHHHHHHHHcccc----CCCCeEEEEEecCeeEEEEEeCCCCCCHHH------
Q 000593 3 TINRLPEAVRNTVRSGTVL-----FDLTRVVEELVFNSVD----AGATKVFVYVGVCNCYVKVVDDGSGISRDG------ 67 (1402)
Q Consensus 3 ~IkkLpeeVi~qIaSGeVI-----~sp~svVKELVENSLD----AgAT~I~V~Id~g~~~I~V~DNG~GIs~eD------ 67 (1402)
.|+.|..-=.-+.|-|-+| ..+.++|.|+|+||+| ..|+.|.|.|+.++ .|+|.|||.|||.+-
T Consensus 9 ~i~~L~glE~VRkRPgMYIGst~~~GL~hlv~EIvdNavDE~~ag~~~~I~V~i~~dg-sitV~DnGrGIPv~~h~~~~~ 87 (637)
T TIGR01058 9 AIKILEGLDAVRKRPGMYIGSTDSKGLHHLVWEIVDNSVDEVLAGYADNITVTLHKDN-SITVQDDGRGIPTGIHQDGNI 87 (637)
T ss_pred HCeeecccHHHhcCCCCeECCCCcchhheehhhhhcchhhhhhcCCCcEEEEEEcCCC-eEEEEECCCcccCcccCcCCC
Confidence 3666654444456666665 4467899999999999 46999999998554 799999999999742
Q ss_pred --HHHhhcc-ccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCc-eeee-eccccC
Q 000593 68 --LVLLGER-HATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGS-KCLY-LGIDDE 141 (1402)
Q Consensus 68 --L~~~~~r-haTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~g-k~~~-~~~~~~ 141 (1402)
++.++.. |+.+|+.+ +-++ .+-|++|++++.+.++|. ++|.++..+ ..|...+..| .... ......
T Consensus 88 ~~~E~v~t~LhaGgkfd~--~~yk----vSGGlhGvG~svvNAlS~~~~V~v~r~g--k~~~q~f~~Gg~~~~~l~~~~~ 159 (637)
T TIGR01058 88 STVETVFTVLHAGGKFDQ--GGYK----TAGGLHGVGASVVNALSSWLEVTVKRDG--QIYQQRFENGGKIVQSLKKIGT 159 (637)
T ss_pred ccceeEEEEecccCcCCC--Cccc----ccCCcccccccccceeeceEEEEEEECC--EEEEEEEecCCcCcCCcccccC
Confidence 2233333 77788853 2233 466999999999999996 888887544 3466667653 4321 111122
Q ss_pred CCCCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCCc-eEEEeCCCCCHHHHHHhhh
Q 000593 142 RKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESED-ELLCTCSSSSPLALLISSF 220 (1402)
Q Consensus 142 ~~~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~k-~ll~t~~sss~le~L~sIF 220 (1402)
...+||+|++ +|....|- ...-..+.|++.++.+|..+|++++++.+..... ..+... ..+.+.+..+-
T Consensus 160 ~~~~GT~V~F------~PD~~iF~--~~~f~~d~l~~RlrelA~Ln~GL~I~l~der~~~~~~f~~~--~Gl~~yv~~l~ 229 (637)
T TIGR01058 160 TKKTGTLVHF------HPDPTIFK--TTQFNSNIIKERLKESAFLLKKLKLTFTDKRTNKTTVFFYE--NGLVDFVDYIN 229 (637)
T ss_pred CCCCceEEEE------EeCHHHcC--CCccCHHHHHHHHHHHhccCCCcEEEEEecCCCceEEEEcC--cCHHHHHHHhc
Confidence 3469999999 68877772 2233456799999999999999999999743221 224433 34444444322
Q ss_pred C-cccccCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCccccc
Q 000593 221 G-IEDFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK 268 (1402)
Q Consensus 221 G-~e~as~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s 268 (1402)
. .......+.++...+++.++..+.-. ......++-|||+-+-..
T Consensus 230 ~~k~~l~~~i~~~~~~~~~~vevAl~~~---~~~~e~~~SFvN~I~T~~ 275 (637)
T TIGR01058 230 ETKETLSQVTYFEGEKNGIEVEVAFQFN---DGDSENILSFANSVKTKE 275 (637)
T ss_pred CCCCcCCccEEEEEEECCcEEEEEEEEc---CCCCeEEEEeECCccCCC
Confidence 1 11111222333333456666665531 122346899999988764
No 31
>PRK14083 HSP90 family protein; Provisional
Probab=99.23 E-value=7.7e-11 Score=145.11 Aligned_cols=239 Identities=18% Similarity=0.174 Sum_probs=142.2
Q ss_pred HHHHHhccccccCHHHHHHHHHHccccCCCC----------eEEEEE-ecCeeEEEEEeCCCCCCHHHHHHhhccccCC-
Q 000593 11 VRNTVRSGTVLFDLTRVVEELVFNSVDAGAT----------KVFVYV-GVCNCYVKVVDDGSGISRDGLVLLGERHATS- 78 (1402)
Q Consensus 11 Vi~qIaSGeVI~sp~svVKELVENSLDAgAT----------~I~V~I-d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS- 78 (1402)
++..| +.....++..+|+|||+||.||.++ .|.|.+ +.+...|+|.|||.||+.+++...+..-+.|
T Consensus 12 ll~ll-~~~LYs~~~iflrELiqNA~DA~~~~~~~~~~~~~~I~I~~~d~~~~~l~I~DnGiGmt~eel~~~l~~ig~S~ 90 (601)
T PRK14083 12 VIDLL-SRHLYSSPRVYVRELLQNAVDAITARRALDPTAPGRIRIELTDAGGGTLIVEDNGIGLTEEEVHEFLATIGRSS 90 (601)
T ss_pred HHHHH-HHhhcCCcHHHHHHHHHhHHHHHHhhhccCCCCCceEEEEEccCCCcEEEEEeCCCCCCHHHHHHHHhhhccch
Confidence 44444 3567789999999999999999876 788888 7777789999999999999999765554433
Q ss_pred CCCCcccccccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeeecc-ccCCCCCceEEEEccccc
Q 000593 79 KLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGI-DDERKDVGTTVVSRDLFY 156 (1402)
Q Consensus 79 Ki~s~eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~~~-~~~~~~~GTTVtV~dLF~ 156 (1402)
|.... +.. ......|..|.|++|...++ +|+|+||..+...++.+...++....+.. ......+||+|++.-
T Consensus 91 k~~~~--~~~-~~~~~IG~FGIGf~S~F~vad~v~V~Tr~~~~~~~~~W~~~~~g~y~i~~~~~~~~~~GT~I~L~l--- 164 (601)
T PRK14083 91 KRDEN--LGF-ARNDFLGQFGIGLLSCFLVADEIVVVSRSAKDGPAVEWRGKADGTYSVRKLETERAEPGTTVYLRP--- 164 (601)
T ss_pred hhhhh--hcc-cccccccccccceEEEEEecCEEEEEeccCCCCceEEEEECCCCceEEEeCCCCCCCCCCEEEEEe---
Confidence 43211 100 01146799999999999998 59999998765556666554432211221 123557999999973
Q ss_pred ChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEE----cCCCceEEEeCCCCC-------HHHHHHhhhCcccc
Q 000593 157 NQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFID----MESEDELLCTCSSSS-------PLALLISSFGIEDF 225 (1402)
Q Consensus 157 NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~----~~~~k~ll~t~~sss-------~le~L~sIFG~e~a 225 (1402)
-|.-+.++. -..|+.++..|+-.-| +-+.+.. .+.... +++...+. ..+....+++ ...
T Consensus 165 -~~d~~~~~~------~~~i~~li~~ys~~i~-~pI~l~~~~~~iN~~~~-lW~~~~~eit~~~eey~~Fyk~~~~-~~P 234 (601)
T PRK14083 165 -RPDAEEWLE------RETVEELAKKYGSLLP-VPIRVEGEKGGVNETPP-PWTRDYPDPETRREALLAYGEELLG-FTP 234 (601)
T ss_pred -cCchhhhcc------HHHHHHHHHHHhccCC-CCcccCCceeeecCCCC-CccCCccccCccHHHHHHHHHHhcC-CCc
Confidence 122222322 2467778888854322 2233321 111122 33332222 3344556666 211
Q ss_pred cCcEEEeecCCcEEEEEEEe-CCCC-CCCCcceEEEEEcCccccc
Q 000593 226 SFLDEVNANDGALEISGYIS-SPYD-SISVKAFQYVYINSRYVCK 268 (1402)
Q Consensus 226 s~LieIe~e~~~~kIeGfIS-~P~~-srsSKd~QFIFVNGRpV~s 268 (1402)
-.++.++++.. ...|.+= .|.. +...+...-+|+|+=.|..
T Consensus 235 l~~ih~~~e~~--~~~~~Ly~iP~~~~~~~~~~v~LY~~rVfI~d 277 (601)
T PRK14083 235 LDVIPLDVPSG--GLEGVAYVLPYAVSPAARRKHRVYLKRMLLSE 277 (601)
T ss_pred hheeeecccch--hheEEEEecCCCCCccccCceEEEeeeeEeec
Confidence 12344444442 3355443 3422 2223445678898888765
No 32
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Probab=99.11 E-value=7.9e-10 Score=134.06 Aligned_cols=318 Identities=16% Similarity=0.176 Sum_probs=189.4
Q ss_pred cccCChHHHHHHhccccc------cCHHHHHHHHHHccccCC----CCeEEEEEecCeeEEEEEeCCCCCCHHH------
Q 000593 4 INRLPEAVRNTVRSGTVL------FDLTRVVEELVFNSVDAG----ATKVFVYVGVCNCYVKVVDDGSGISRDG------ 67 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI------~sp~svVKELVENSLDAg----AT~I~V~Id~g~~~I~V~DNG~GIs~eD------ 67 (1402)
|+.|..=-.-+.|-|-+| ..+.+.|.|+|+||+|.. |+.|.|.++.++ +|+|.|||.|||.+-
T Consensus 11 I~vL~GLEaVRkRPGMYIGst~~~~GLhHlv~EVvDNsiDEalaG~~~~I~V~l~~d~-sisV~DnGRGIPvdiH~~~~~ 89 (635)
T COG0187 11 IQVLEGLEAVRKRPGMYIGSTGDGRGLHHLVWEVVDNSIDEALAGYADRIDVTLHEDG-SISVEDNGRGIPVDIHPKEKV 89 (635)
T ss_pred ceeccCcHHhhcCCCceeccCCCCCcceeeEeEeeechHhHHhhCcCcEEEEEEcCCC-eEEEEECCCCCccccCCCCCC
Confidence 555553333345555554 567789999999999973 999999998544 699999999999874
Q ss_pred --HHHhhcc-ccCCCCCCcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceee-eecc-c-c
Q 000593 68 --LVLLGER-HATSKLGHLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCL-YLGI-D-D 140 (1402)
Q Consensus 68 --L~~~~~r-haTSKi~s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~-~~~~-~-~ 140 (1402)
++.++.. |+.+|+.. +-++ .+-|..|.+.+-..++|. ++|+++..+ .-|+..|..|... .+.. . .
T Consensus 90 ~~vEvI~T~LHAGGKFd~--~~Yk----vSGGLHGVG~SVVNALS~~l~v~v~r~g--k~y~q~f~~G~~~~~l~~ig~~ 161 (635)
T COG0187 90 SAVEVIFTVLHAGGKFDN--DSYK----VSGGLHGVGVSVVNALSTWLEVEVKRDG--KIYRQRFERGVPVTPLEVIGST 161 (635)
T ss_pred CceEEEEEeeccCcccCC--CccE----eecCCCccceEEEecccceEEEEEEECC--EEEEEEEeCCCcCCCceecccC
Confidence 4445554 89999874 4444 466899999999999985 777777654 3466667655432 1111 1 1
Q ss_pred CCCCCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCCCeEEEEEEcCCC--ceEEEeCCCCCHHHHHHh
Q 000593 141 ERKDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE--DELLCTCSSSSPLALLIS 218 (1402)
Q Consensus 141 ~~~~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P~IsFsL~~~~~~--k~ll~t~~sss~le~L~s 218 (1402)
....+||+|++ .|.-..|-. ..-.+..|++.|+.+|..+++|++.+.+.... +..|.. ...+.+.+..
T Consensus 162 ~~~~~GT~V~F------~PD~~iF~~--~~f~~~~l~~RlrelA~L~~gl~I~l~d~r~~~~~~~~~y--~~Gl~~yv~~ 231 (635)
T COG0187 162 DTKKTGTKVRF------KPDPEIFGE--TEFDYEILKRRLRELAFLNKGVKITLTDERTGEEKKEFHY--EGGLKDYVEY 231 (635)
T ss_pred CCCCCccEEEE------EcChHhcCC--cccCHHHHHHHHHHHhccCCCCEEEEEeccCCcccceeec--ccHHHHHHHH
Confidence 23578999999 577766622 45567889999999999999999999975332 111322 3334445544
Q ss_pred hhCc-ccc-cCcEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEcCcccccc---------hHHHHHHHHHHhhccCCc
Q 000593 219 SFGI-EDF-SFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDS 287 (1402)
Q Consensus 219 IFG~-e~a-s~LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVNGRpV~s~---------~I~KlIneL~~sF~sl~p 287 (1402)
+-.. ... ........+..++.++-.+.- .-.....++-|+|+-+-..+ .|.++||+.....+. .+
T Consensus 232 l~~~k~~l~~~~~~~~~~~~~~~vEvA~q~---~d~~~e~~~SFvNnI~T~eGGTH~~Gfr~altr~in~y~~~~~~-~k 307 (635)
T COG0187 232 LNKGKTPLHEEIFYFNGEKDGIAVEVALQW---NDGYSENILSFVNNIPTREGGTHEAGFRSALTRAINEYAKKKNL-LK 307 (635)
T ss_pred HhcCCCccccCceecccCccceEEEEEEEE---ecCCceEEEEeecCccCCCCchHHHHHHHHHHHHHHHHHHHhCc-Cc
Confidence 4322 111 112222233334455544442 12235678999999886642 355555554332211 11
Q ss_pred cccccCcccCCCCCCCCCceEEEEEEcCCCcccccccCCCCeEEeCCc-hHHHHHHHHHHHHHHhhh
Q 000593 288 WKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 288 ~~~~~~~~~~~r~~~~ryP~fVLnI~cPps~VDVNVhPaKtEV~F~dE-~~Il~lI~kaIksfL~~~ 353 (1402)
... .. ..-....-++||++.+|--.++ -=+|...--..- ..|-.++.+.+..||.++
T Consensus 308 --~~~--l~--g~Diregl~aviSvki~~PqFe---gQTK~KL~n~e~~~~V~~~v~~~~~~~l~en 365 (635)
T COG0187 308 --EGD--LT--GDDIREGLTAVISVKIPDPQFE---GQTKEKLGNSEVRSIVEKLVSEAFSLFLEEN 365 (635)
T ss_pred --ccC--CC--HHHHhhccEEEEEEECCCCCcC---cccccccccHHHHHHHHHHHHHHHHHHHHHC
Confidence 000 00 0012244689999999843221 112332211111 234455666666666655
No 33
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=98.92 E-value=1.9e-08 Score=122.85 Aligned_cols=236 Identities=16% Similarity=0.137 Sum_probs=137.8
Q ss_pred cccccCHHHHHHHHHHccccCC------------------CCeEEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCC-
Q 000593 18 GTVLFDLTRVVEELVFNSVDAG------------------ATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATS- 78 (1402)
Q Consensus 18 GeVI~sp~svVKELVENSLDAg------------------AT~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS- 78 (1402)
..+-.+..--++|||.||-||- .-.|.|.+|....+++|+|||+||+.+|+.....--+-|
T Consensus 22 hSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~~~~~~~~I~i~~Dk~~kTLtI~DNGIGMT~~Ev~~~LgTIAkSg 101 (623)
T COG0326 22 HSLYSNKEIFLRELISNASDAIDKLRFEALSDPELGEGDSDLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSG 101 (623)
T ss_pred HhccCCcHHHHHHHHhhhHHHHHHHHHHhccCccccCCCCCceEEEEEcccCCEEEEEeCCCCCCHHHHHHHHHHhhhcc
Confidence 4455677889999999999991 235667777777899999999999999986432111111
Q ss_pred ---CCCCc-ccccccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeeeccccCCCC-CceEEEEc
Q 000593 79 ---KLGHL-ADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKD-VGTTVVSR 152 (1402)
Q Consensus 79 ---Ki~s~-eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~~-~GTTVtV~ 152 (1402)
.+... +|-. ...-.|..|.+++|-..|| +|+|+||..+.+.++.+.-+|.....+.. ....+ +||+|+++
T Consensus 102 T~~F~~~l~~~~~---~~~lIGQFGVGFYSaFmVAdkV~V~T~~~~~~~~~~W~S~g~g~ytv~~-~~~~~~~GT~I~L~ 177 (623)
T COG0326 102 TKEFLESLSEDQK---DSDLIGQFGVGFYSAFMVADKVTVITRSAGEDEAYHWESDGEGEYTVED-IDKEPRRGTEITLH 177 (623)
T ss_pred HHHHHHHhccccc---cccccccccchhhheeeeeeeEEEEeccCCCCcceEEEEcCCCceEEee-ccCCCCCCcEEEEE
Confidence 11111 1111 1246798899999999998 69999999998888877766543221111 12234 69999996
Q ss_pred ccccChhHHHHHhhcCchHHHHHHHHHHHHHHhhCC-CeEEEEEEcC-----------CCceEEEeCCCCCH-HHHHHhh
Q 000593 153 DLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHP-KVSFKFIDME-----------SEDELLCTCSSSSP-LALLISS 219 (1402)
Q Consensus 153 dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi~P-~IsFsL~~~~-----------~~k~ll~t~~sss~-le~L~sI 219 (1402)
= .|.-..++. --+|+.+|..|+-.-+ -|.+...... +.+. +++.+.+.+ .+.....
T Consensus 178 L----k~~e~efl~------~~rl~~ivkkYSd~i~~PI~~~~~~~~~~~~~~~e~iN~~~a-lW~r~ksei~~eeY~eF 246 (623)
T COG0326 178 L----KEEEDEFLE------EWRLREIVKKYSDHIAYPIYIEGEKEKDEEVIEWETINKAKA-LWTRNKSEITDEEYKEF 246 (623)
T ss_pred E----CCchHHHhh------hhHHHHHHHHHhcccccceEEeeeccccccchhHHHhccccC-cccCChhhCChHHHHHH
Confidence 1 122222332 2468889999975433 3555442210 1112 223222211 1222222
Q ss_pred h---CcccccCcEEEeecC-CcEEEEEEEeCCCC------CCCCcceEEEEEcCccccc
Q 000593 220 F---GIEDFSFLDEVNAND-GALEISGYISSPYD------SISVKAFQYVYINSRYVCK 268 (1402)
Q Consensus 220 F---G~e~as~LieIe~e~-~~~kIeGfIS~P~~------srsSKd~QFIFVNGRpV~s 268 (1402)
| -......|..+..+. +.+...+++=-|.. .+..|..+-+|||+-.|.+
T Consensus 247 Yk~~~~d~~~Pl~~~h~~~EG~~ey~~ll~iP~~aPfdl~~~~~k~glkLYv~rVfI~D 305 (623)
T COG0326 247 YKHLAHDFDDPLLWIHNKVEGRLEYTALLFIPSKAPFDLFRRDRKRGLKLYVNRVFIMD 305 (623)
T ss_pred HHHhhcccCCCeEEEecccccceEEEEEEEccCCCCcccccccccCCcEEEEeeeEEeC
Confidence 2 122223344444433 33666666555421 2344667889999998875
No 34
>PTZ00109 DNA gyrase subunit b; Provisional
Probab=98.90 E-value=8.8e-09 Score=129.86 Aligned_cols=228 Identities=19% Similarity=0.208 Sum_probs=144.9
Q ss_pred cCHHHHHHHHHHccccC---C-CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcc-ccCCCCCCcc----
Q 000593 22 FDLTRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGER-HATSKLGHLA---- 84 (1402)
Q Consensus 22 ~sp~svVKELVENSLDA---g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~~~~r-haTSKi~s~e---- 84 (1402)
..+.++|.|+|+||+|- | |+.|.|.|+.++ +|+|.|||.|||.+- ++.++.. |+++|+..-.
T Consensus 128 ~GLhhLv~EIlDNSVDE~laG~~~~I~V~i~~Dg-sItV~DnGRGIPvd~h~k~g~s~~E~VlT~LhAGGKF~~~~~~~~ 206 (903)
T PTZ00109 128 KGLHQLLFEILDNSVDEYLAGECNKITVVLHKDG-SVEISDNGRGIPCDVSEKTGKSGLETVLTVLHSGGKFQDTFPKNS 206 (903)
T ss_pred CcceEEEEEEeeccchhhccCCCcEEEEEEcCCC-eEEEEeCCccccccccccCCCcceeEEEEEeccCccccCcccccc
Confidence 45678999999999995 3 899999997654 699999999999753 2333333 7888885410
Q ss_pred ---------c-------------------------ccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEe
Q 000593 85 ---------D-------------------------MDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMK 129 (1402)
Q Consensus 85 ---------D-------------------------L~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~ 129 (1402)
| -+. .+-|..|++++...++|. ++|.++..+. -|...|.
T Consensus 207 ~~~~~~~~~d~~~~~k~~~~~~~~~~~~~~~~~~~~Yk----vSGGLHGVG~SVVNALS~~l~VeV~RdGK--~y~q~F~ 280 (903)
T PTZ00109 207 RSDKSEDKNDTKSSKKGKSSHVKGPKEAKEKESSQMYE----YSSGLHGVGLSVVNALSSFLKVDVFKGGK--IYSIELS 280 (903)
T ss_pred cccccccccccccccccccccccccccccccccCCcce----ecCcCCCcceeeeeeccCeEEEEEEECCE--EEEEEeC
Confidence 0 111 356899999999999985 8888877553 5777887
Q ss_pred Cceeeee-ccccCC-CCCceEEEEcccccChhH-HHHHhhcCch-------------HHHHHHHHHHHHHHhhCCCeEEE
Q 000593 130 GSKCLYL-GIDDER-KDVGTTVVSRDLFYNQPV-RRKYMQSSPK-------------KVLHSVKKCVLRIALVHPKVSFK 193 (1402)
Q Consensus 130 ~gk~~~~-~~~~~~-~~~GTTVtV~dLF~NlPV-RRK~L~s~~k-------------kel~~Ik~~L~~yALi~P~IsFs 193 (1402)
.|..... ...... ..+||+|++ +|. .+-| ..... -.++.|++.|+.+|..+|+++|+
T Consensus 281 rG~~v~pLkvig~~~~~tGT~VtF------~PD~~~IF-~~~~~~~~~~~~~~~~~~F~~d~L~~RLrElAfLNpGL~I~ 353 (903)
T PTZ00109 281 KGKVTKPLSVFSCPLKKRGTTIHF------LPDYKHIF-KTHHQHTETEEEEGCKNGFNLDLIKNRIHELSYLNPGLTFY 353 (903)
T ss_pred CCcccCCccccCCcCCCCceEEEE------EeCcchhc-CccccccccccccccccccCHHHHHHHHHHHhccCCCcEEE
Confidence 7764311 111122 469999999 466 4434 21111 24678999999999999999999
Q ss_pred EEEcCCC-------ceEEEeCCCCCHHHHHHhhhCc-ccc-cC--cEEEeecCCcEEEEEEEeCCCCCCCCcceEEEEEc
Q 000593 194 FIDMESE-------DELLCTCSSSSPLALLISSFGI-EDF-SF--LDEVNANDGALEISGYISSPYDSISVKAFQYVYIN 262 (1402)
Q Consensus 194 L~~~~~~-------k~ll~t~~sss~le~L~sIFG~-e~a-s~--LieIe~e~~~~kIeGfIS~P~~srsSKd~QFIFVN 262 (1402)
|.+.... ...+.. ...+.+.+..+-.. ... .. .+.+..+.+++.|+-.+.-.. ......++-|||
T Consensus 354 L~DeR~~~~~~~~~~e~f~~--egGi~dfv~~ln~~k~~l~~~~~~I~~~g~~~~i~VEVAlq~s~--~~y~e~i~SFVN 429 (903)
T PTZ00109 354 LVDERIANENNFYPYETIKH--EGGTREFLEELIKDKTPLYKDINIISIRGVIKNVNVEVSLSWSL--ESYTALIKSFAN 429 (903)
T ss_pred EEecCccccCCcceEEEEEe--cCCHHHHHHHhcCCCCccCCCCceEEEEeeecCeEEEEEEEecC--CCCceEEEEEEC
Confidence 9975321 122333 33455555444321 111 11 233333334556665555311 122456889999
Q ss_pred Ccccc
Q 000593 263 SRYVC 267 (1402)
Q Consensus 263 GRpV~ 267 (1402)
+-+-.
T Consensus 430 nI~T~ 434 (903)
T PTZ00109 430 NVSTT 434 (903)
T ss_pred CccCC
Confidence 98866
No 35
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Probab=98.84 E-value=9.2e-08 Score=125.89 Aligned_cols=166 Identities=18% Similarity=0.108 Sum_probs=118.6
Q ss_pred ccccCHHHHHHHHHHccccC-------C-CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcc-ccCCCCC
Q 000593 19 TVLFDLTRVVEELVFNSVDA-------G-ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGER-HATSKLG 81 (1402)
Q Consensus 19 eVI~sp~svVKELVENSLDA-------g-AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~~~~r-haTSKi~ 81 (1402)
.++..+..++-|+|.||+|- | |+.|.|.|+.+...|+|.|||.|||.+- .+.++.. |++||+.
T Consensus 53 ~~vpGL~ki~dEIldNAvDe~~r~~~~g~~~~I~V~i~~d~g~IsV~dnGrGIPv~~h~~~~~~~pElIft~L~aGgkfd 132 (1388)
T PTZ00108 53 TYVPGLYKIFDEILVNAADNKARDKGGHRMTYIKVTIDEENGEISVYNDGEGIPVQIHKEHKIYVPEMIFGHLLTSSNYD 132 (1388)
T ss_pred cccchhhhhHHHHhhhhhhhhcccCCCCCccEEEEEEeccCCeEEEEecCCcccCCCCCCCCCccceEEEEEeeccccCC
Confidence 45678899999999999994 3 7899999987755799999999999752 2334444 7888885
Q ss_pred CcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCc--eeeeeccccCCC-CCceEEEEcccccC
Q 000593 82 HLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGS--KCLYLGIDDERK-DVGTTVVSRDLFYN 157 (1402)
Q Consensus 82 s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~g--k~~~~~~~~~~~-~~GTTVtV~dLF~N 157 (1402)
+ +-+. .+-|..|.+.....++|. ++|+++.......|...|..| ......+..... ..||+|++
T Consensus 133 d--~~yK----vSGGlhGVGasvvNalS~~f~Vev~r~~~gk~y~q~f~~Gm~~~~~p~i~~~~~~~~GT~VtF------ 200 (1388)
T PTZ00108 133 D--TEKR----VTGGRNGFGAKLTNIFSTKFTVECVDSKSGKKFKMTWTDNMSKKSEPRITSYDGKKDYTKVTF------ 200 (1388)
T ss_pred C--Ccee----eecccccCCccccccccceEEEEEEECCCCCEEEEEecCCCcCCCCCccCCCCCCCCceEEEE------
Confidence 3 2233 467889999888888884 888888764445677777765 221111112222 69999999
Q ss_pred hhHHHHHhhcCc-hHHHHHHHHHHHHHHhhCCCeEEEEEE
Q 000593 158 QPVRRKYMQSSP-KKVLHSVKKCVLRIALVHPKVSFKFID 196 (1402)
Q Consensus 158 lPVRRK~L~s~~-kkel~~Ik~~L~~yALi~P~IsFsL~~ 196 (1402)
+|....|=.... .....-|.+.++.+|..+|+|++.|.+
T Consensus 201 ~PD~~iF~~~~fd~d~~~ll~~Rl~dlA~ln~GLkI~lnd 240 (1388)
T PTZ00108 201 YPDYAKFGMTEFDDDMLRLLKKRVYDLAGCFGKLKVYLNG 240 (1388)
T ss_pred EeCHHHcCCCccChHHHHHHHHHHHHHhcCCCCcEEEEeC
Confidence 588777721111 223344889999999999999999975
No 36
>PTZ00130 heat shock protein 90; Provisional
Probab=98.82 E-value=9e-09 Score=129.26 Aligned_cols=159 Identities=14% Similarity=0.131 Sum_probs=103.3
Q ss_pred ccccccCHHHHHHHHHHccccCCC----------------C--eEEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 17 SGTVLFDLTRVVEELVFNSVDAGA----------------T--KVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 17 SGeVI~sp~svVKELVENSLDAgA----------------T--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
++.+..++.-.|+|||.||.||.+ + .|.|..|.....|+|.|||+||+.+++..-...-+.|
T Consensus 82 i~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~~~~~~~~I~I~~D~~~~tLtI~DnGIGMT~eEl~~nLgTIA~S 161 (814)
T PTZ00130 82 VNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVLGEEKKLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKS 161 (814)
T ss_pred hhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhcCCCCCceEEEEECCCCCEEEEEECCCCCCHHHHHHHhhhhccc
Confidence 356778899999999999999975 2 3555555556789999999999999987544443333
Q ss_pred CCCCc-ccccc-cCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeeecc-c-cCCCCCceEEEEcc
Q 000593 79 KLGHL-ADMDD-ATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGI-D-DERKDVGTTVVSRD 153 (1402)
Q Consensus 79 Ki~s~-eDL~~-l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~~~-~-~~~~~~GTTVtV~d 153 (1402)
--..| +.+.. -....-+|..|.|++|...|| +|+|+||..+ ..+|.+.-+++....+.. . ..+..+||+|+++
T Consensus 162 gt~~F~~~l~~~~~~~~lIGQFGVGFYSaFmVAdkV~V~Trs~~-~~~~~W~s~g~g~y~I~e~~~~~~~~rGT~I~Lh- 239 (814)
T PTZ00130 162 GTSNFLEAISKSGGDMSLIGQFGVGFYSAFLVADKVIVYTKNNN-DEQYIWESTADAKFTIYKDPRGSTLKRGTRISLH- 239 (814)
T ss_pred ccHHHHHHhhccCCCcccccccccchhheeeecCEEEEEEcCCC-CceEEEEECCCCcEEEEECCCCCCCCCCcEEEEE-
Confidence 11111 11110 001246798899999999998 5999999766 456777665543221221 1 1234799999996
Q ss_pred cccChhHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 000593 154 LFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALV 186 (1402)
Q Consensus 154 LF~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi 186 (1402)
| -+.-..++. -.+|+.+|..|+-.
T Consensus 240 L---ked~~efl~------~~~ik~likkYS~f 263 (814)
T PTZ00130 240 L---KEDATNLMN------DKKLVDLISKYSQF 263 (814)
T ss_pred E---CCchhhhcc------HHHHHHHHHHhhcc
Confidence 2 111122322 35688889998754
No 37
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Probab=98.81 E-value=8.1e-09 Score=129.07 Aligned_cols=159 Identities=17% Similarity=0.181 Sum_probs=101.0
Q ss_pred ccccccCHHHHHHHHHHccccCCCC----------------e--EEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 17 SGTVLFDLTRVVEELVFNSVDAGAT----------------K--VFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 17 SGeVI~sp~svVKELVENSLDAgAT----------------~--I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+...-.++...|+|||.||.||..+ . |.|..+.....|+|.|||.||+.+|+...+..-+.|
T Consensus 19 i~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~~~~~~~~I~i~~d~~~~~L~I~DnGiGMt~edl~~~LgtIa~S 98 (701)
T PTZ00272 19 INTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVLGESPRLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARS 98 (701)
T ss_pred HhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhcCCCCceEEEEEEcCCCCEEEEEECCCCCCHHHHHHHhhhhhhc
Confidence 3455577788999999999999422 3 444445556789999999999999987655443332
Q ss_pred CCCCc-ccccccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeeecc-ccCCCCCceEEEEcccc
Q 000593 79 KLGHL-ADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGI-DDERKDVGTTVVSRDLF 155 (1402)
Q Consensus 79 Ki~s~-eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~~~-~~~~~~~GTTVtV~dLF 155 (1402)
=-..| ..+.........|..|.|++|...|+ +|+|+||..+. .+|.+..+++....... ......+||+|++. |
T Consensus 99 Gt~~f~~~~~~~~~~~~iGqFGvGfyS~Fmvad~V~V~Srs~~~-~~~~W~s~~~g~y~i~~~~~~~~~~GT~I~L~-L- 175 (701)
T PTZ00272 99 GTKAFMEALEAGGDMSMIGQFGVGFYSAYLVADRVTVTSKNNSD-ESYVWESSAGGTFTITSTPESDMKRGTRITLH-L- 175 (701)
T ss_pred chHHHHHHhhccCCccccCCCCcceEEEEEeccEEEEEEecCCC-ceEEEEECCCCcEEEEeCCCCCCCCCCEEEEE-E-
Confidence 00001 00100001246788899999999998 59999998653 57888777653222221 12234799999996 1
Q ss_pred cChhHHHHHhhcCchHHHHHHHHHHHHHHhh
Q 000593 156 YNQPVRRKYMQSSPKKVLHSVKKCVLRIALV 186 (1402)
Q Consensus 156 ~NlPVRRK~L~s~~kkel~~Ik~~L~~yALi 186 (1402)
-|.-..|+. -..|+.+|..|+-.
T Consensus 176 --k~d~~ef~~------~~~i~~li~kYs~f 198 (701)
T PTZ00272 176 --KEDQMEYLE------PRRLKELIKKHSEF 198 (701)
T ss_pred --CCchHHhcc------HHHHHHHHHHhccc
Confidence 122222322 24688889998653
No 38
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Probab=98.75 E-value=1.5e-08 Score=125.46 Aligned_cols=160 Identities=24% Similarity=0.236 Sum_probs=113.9
Q ss_pred ccCHHHHHHHHHHccccC------C-CCeEEEEEecCeeEEEEEeCCCCCCHHHH-----------HHhh-ccccCCCCC
Q 000593 21 LFDLTRVVEELVFNSVDA------G-ATKVFVYVGVCNCYVKVVDDGSGISRDGL-----------VLLG-ERHATSKLG 81 (1402)
Q Consensus 21 I~sp~svVKELVENSLDA------g-AT~I~V~Id~g~~~I~V~DNG~GIs~eDL-----------~~~~-~rhaTSKi~ 81 (1402)
+..+.+++.|+|+||+|- | |+.|.|.|+ ..+|+|.|||.|||.+-- +.++ .-|+.+|+.
T Consensus 43 ~~GL~hi~~EIldNavDe~~~~~~g~~~~I~V~i~--dgsisV~dnGrGIPv~~h~~~~g~~~~~~E~i~t~LhaGgkFd 120 (602)
T PHA02569 43 VPGLVKIIDEIIDNSVDEAIRTNFKFANKIDVTIK--NNQVTVSDNGRGIPQAMVTTPEGEEIPGPVAAWTRTKAGSNFD 120 (602)
T ss_pred cccceeeeehhhhhhhhhhhccCCCCCcEEEEEEc--CCEEEEEECCCcccCCcccccccccccceEEEEEeeccccccC
Confidence 466778999999999995 4 899999999 346999999999997522 1223 337888883
Q ss_pred CcccccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeeeeccccCCCCCceEEEEcccccChhH
Q 000593 82 HLADMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPV 160 (1402)
Q Consensus 82 s~eDL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~~~GTTVtV~dLF~NlPV 160 (1402)
|-++ .+-|..|.++....++|. ++|+++. + ...|...+..|.............+||+|++ +|.
T Consensus 121 ---~~yk----vSGGlhGVG~svvNaLS~~~~V~v~~-~-~~~~~q~f~~G~~~~~~~~~~~~~~GT~V~F------~PD 185 (602)
T PHA02569 121 ---DTNR----VTGGMNGVGSSLTNFFSVLFIGETCD-G-KNEVTVNCSNGAENISWSTKPGKGKGTSVTF------IPD 185 (602)
T ss_pred ---Ccce----eeCCcCCccceeeeccchhhheEEEc-C-CEEEEEEecCCcccCCcccCCCCCCccEEEE------EEC
Confidence 3344 467899999999999984 7776643 3 3347777776653211011223469999999 688
Q ss_pred HHHHhhcCc-hHHHHHHHHHHHHHHhhCCCeEEEEEEc
Q 000593 161 RRKYMQSSP-KKVLHSVKKCVLRIALVHPKVSFKFIDM 197 (1402)
Q Consensus 161 RRK~L~s~~-kkel~~Ik~~L~~yALi~P~IsFsL~~~ 197 (1402)
...|-.... ...++.|.+.++.+|..+|++++.|.+.
T Consensus 186 ~~iF~~~~~~~~~~~~l~~Rl~elA~Ln~Gl~I~l~de 223 (602)
T PHA02569 186 FSHFEVNGLDQQYLDIILDRLQTLAVVFPDIKFTFNGK 223 (602)
T ss_pred HHHhCCCccCccHHHHHHHHHHHHhcCCCCCEEEEEec
Confidence 777722111 1236778999999999999999999863
No 39
>PLN03128 DNA topoisomerase 2; Provisional
Probab=98.73 E-value=1.5e-07 Score=122.80 Aligned_cols=166 Identities=19% Similarity=0.200 Sum_probs=115.6
Q ss_pred ccccCHHHHHHHHHHccccCC-----CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcc-ccCCCCCCcc
Q 000593 19 TVLFDLTRVVEELVFNSVDAG-----ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGER-HATSKLGHLA 84 (1402)
Q Consensus 19 eVI~sp~svVKELVENSLDAg-----AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~~~~r-haTSKi~s~e 84 (1402)
.++..+..++-|+|.||+|-. |+.|.|.|+.+..+|+|.|||.|||.+- .+.++.. |++||+.+
T Consensus 48 ~~vpGL~ki~dEIldNAvDe~~~~g~~~~I~V~i~~~dgsIsV~DnGrGIPv~ih~~~g~~~~ElIft~LhaGgkFdd-- 125 (1135)
T PLN03128 48 TYVPGLYKIFDEILVNAADNKQRDPSMDSLKVDIDVEQNTISVYNNGKGIPVEIHKEEGVYVPELIFGHLLTSSNFDD-- 125 (1135)
T ss_pred ccchhHHHHHHHHHHHHHHHhhhcCCCcEEEEEEEcCCCeEEEEecCccccCCCCCCCCCccceEEEEeeccccccCC--
Confidence 456788899999999999954 5899999987555799999999999752 2234444 78888853
Q ss_pred cccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeCceeeee-c-cccC-CCCCceEEEEcccccChhH
Q 000593 85 DMDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKGSKCLYL-G-IDDE-RKDVGTTVVSRDLFYNQPV 160 (1402)
Q Consensus 85 DL~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~gk~~~~-~-~~~~-~~~~GTTVtV~dLF~NlPV 160 (1402)
+-++ .+-|..|.+.....++|. ++|.+........|...+..|..... . +... ...+||+|++ +|.
T Consensus 126 ~~yk----vSGGlhGvGasvvNaLS~~f~Vev~d~r~gk~y~q~f~~G~~~~~~p~i~~~~~~~~GT~ItF------~PD 195 (1135)
T PLN03128 126 NEKK----TTGGRNGYGAKLANIFSTEFTVETADGNRGKKYKQVFTNNMSVKSEPKITSCKASENWTKITF------KPD 195 (1135)
T ss_pred ccce----eeccccCCCCeEEEeecCeEEEEEEECCCCeEEEEEeCCCcccCCCceeccCCCCCCceEEEE------EEC
Confidence 2233 467889999888888884 88888743333467777776642211 0 1111 2359999999 577
Q ss_pred HHHHhhcCc-hHHHHHHHHHHHHHH-hhCCCeEEEEEE
Q 000593 161 RRKYMQSSP-KKVLHSVKKCVLRIA-LVHPKVSFKFID 196 (1402)
Q Consensus 161 RRK~L~s~~-kkel~~Ik~~L~~yA-Li~P~IsFsL~~ 196 (1402)
-..|-.... ...+..+.+.++.+| ..+|+|++.|.+
T Consensus 196 ~~iF~~~~fd~d~~~~l~kRl~elAa~Ln~GlkI~Lnd 233 (1135)
T PLN03128 196 LAKFNMTRLDEDVVALMSKRVYDIAGCLGKKLKVELNG 233 (1135)
T ss_pred HHHcCCCccChHHHHHHHHHHHHHHHhCCCCcEEEEec
Confidence 766621112 233456777788887 778999999986
No 40
>PLN03237 DNA topoisomerase 2; Provisional
Probab=98.57 E-value=2.5e-07 Score=121.65 Aligned_cols=166 Identities=19% Similarity=0.193 Sum_probs=112.3
Q ss_pred cccCHHHHHHHHHHccccCC-----CCeEEEEEecCeeEEEEEeCCCCCCHHH--------HHHhhcc-ccCCCCCCccc
Q 000593 20 VLFDLTRVVEELVFNSVDAG-----ATKVFVYVGVCNCYVKVVDDGSGISRDG--------LVLLGER-HATSKLGHLAD 85 (1402)
Q Consensus 20 VI~sp~svVKELVENSLDAg-----AT~I~V~Id~g~~~I~V~DNG~GIs~eD--------L~~~~~r-haTSKi~s~eD 85 (1402)
++..+..++-|+|.||+|-. ++.|.|.|+.....|+|.|||.|||.+- .+.++.. |++||+.+ +
T Consensus 74 ~vpGL~kifdEIldNAvDe~~r~g~~~~I~V~I~~~~gsIsV~DnGRGIPV~iH~~eg~~~pElIft~LhAGgkFdd--~ 151 (1465)
T PLN03237 74 YVPGLYKIFDEILVNAADNKQRDPKMDSLRVVIDVEQNLISVYNNGDGVPVEIHQEEGVYVPEMIFGHLLTSSNYDD--N 151 (1465)
T ss_pred ccchhhhhHHHHhhhhHhHHhhcCCCCEEEEEEEcCCCEEEEEecCccccCCCCCCCCCccceEEEEeeeccccCCC--C
Confidence 46788899999999999954 6899999986655799999999999752 2234444 78888853 2
Q ss_pred ccccCCCcccCccchhHHHHhhccc-EEEEEEecCCCceEEEEEeC--ceeeeeccccC-CCCCceEEEEcccccChhHH
Q 000593 86 MDDATGIGTFGFRGEALASISDVSL-LEIITKAHGRPNGYRKVMKG--SKCLYLGIDDE-RKDVGTTVVSRDLFYNQPVR 161 (1402)
Q Consensus 86 L~~l~gI~T~GFRGEALaSIsaVS~-LeI~SRt~~~~~g~~i~~~~--gk~~~~~~~~~-~~~~GTTVtV~dLF~NlPVR 161 (1402)
-++ .+-|..|.+.....++|. ++|.++.......|...|.. |......+... ....||+|++ +|.-
T Consensus 152 ~yK----vSGGlhGVGasvvNaLS~~f~Vev~Dg~~gk~y~Q~f~~nmG~~~~p~i~~~~~~~~GT~VtF------~PD~ 221 (1465)
T PLN03237 152 EKK----TTGGRNGYGAKLTNIFSTEFVIETADGKRQKKYKQVFSNNMGKKSEPVITKCKKSENWTKVTF------KPDL 221 (1465)
T ss_pred cce----eeccccccCccccccccCeeEEEEEECCCCeEEEEEEeCCCCccCCceeccCCCCCCceEEEE------EECH
Confidence 233 467899999888888884 88888732223456667764 44321111111 2369999999 5887
Q ss_pred HHHhhcCc-hHHHHHHHHHHHHHH-hhCCCeEEEEEEc
Q 000593 162 RKYMQSSP-KKVLHSVKKCVLRIA-LVHPKVSFKFIDM 197 (1402)
Q Consensus 162 RK~L~s~~-kkel~~Ik~~L~~yA-Li~P~IsFsL~~~ 197 (1402)
..|=.... ...+..+.+.++.+| ..+|+|+|.|.+.
T Consensus 222 eiF~~~~fd~D~l~~~~rRlrdLAa~LnkGlkI~Lnde 259 (1465)
T PLN03237 222 AKFNMTHLEDDVVALMKKRVVDIAGCLGKTVKVELNGK 259 (1465)
T ss_pred HHhCCceEcHHHHHHHHHHHHHHHhccCCCcEEEEEec
Confidence 77721112 223333445666667 7789999999863
No 41
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins. The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
Probab=98.36 E-value=1.2e-06 Score=84.56 Aligned_cols=78 Identities=21% Similarity=0.250 Sum_probs=61.8
Q ss_pred cCHHHHHHHHHHccccCCCC--eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCc
Q 000593 22 FDLTRVVEELVFNSVDAGAT--KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGF 97 (1402)
Q Consensus 22 ~sp~svVKELVENSLDAgAT--~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GF 97 (1402)
..+..++.||++||+++... .|.|.+.. +...|+|.|||.||++++++.++.++.+++.. . ...+-
T Consensus 4 ~~l~~il~~ll~Na~~~~~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~~~~~~~~~----~------~~~~g 73 (111)
T PF02518_consen 4 DRLRQILSELLDNAIKHSPEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFEPFFTSDKS----E------TSISG 73 (111)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCSTTSHSSSS----S------GGSSS
T ss_pred HHHHHHHHHHHHHHHHHhcCCCEEEEEEEEecCeEEEEEEeccccccccccccchhhccccccc----c------cccCC
Confidence 35678999999999999876 88888854 56899999999999999999999998888761 1 12222
Q ss_pred cchhHHHHhhcc
Q 000593 98 RGEALASISDVS 109 (1402)
Q Consensus 98 RGEALaSIsaVS 109 (1402)
.|.+|+....++
T Consensus 74 ~GlGL~~~~~~~ 85 (111)
T PF02518_consen 74 HGLGLYIVKQIA 85 (111)
T ss_dssp SSHHHHHHHHHH
T ss_pred CChHHHHHHHHH
Confidence 677777666664
No 42
>KOG0019 consensus Molecular chaperone (HSP90 family) [Posttranslational modification, protein turnover, chaperones]
Probab=97.84 E-value=4.4e-05 Score=93.01 Aligned_cols=164 Identities=19% Similarity=0.149 Sum_probs=106.0
Q ss_pred cccCChHHHHHHhccccccCHHHHHHHHHHccccCC--------------CCeEEEEE--ecCeeEEEEEeCCCCCCHHH
Q 000593 4 INRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAG--------------ATKVFVYV--GVCNCYVKVVDDGSGISRDG 67 (1402)
Q Consensus 4 IkkLpeeVi~qIaSGeVI~sp~svVKELVENSLDAg--------------AT~I~V~I--d~g~~~I~V~DNG~GIs~eD 67 (1402)
|+.|-+-+++.+-|+ -.--++|||-||-||- .....|+| +.....|+|.|.|.||+.+|
T Consensus 43 ~~qLm~lii~s~YS~-----kEvFlRELISNaSDAldKiRy~~lt~~~~~~~~l~I~i~~nk~~~tlti~DtGIGMTk~d 117 (656)
T KOG0019|consen 43 TNQLMDIVAKSLYSH-----KEVFLRELISNASDALEKLRYLELKGDEKALPELEIRIITNKDKRTITIQDTGIGMTKED 117 (656)
T ss_pred HHhHHHHHHHHhhcc-----hHHHHHhhhccccchHHHHHHHhhcCccccccceeEEeccCCCcceEEEEecCCCcCHHH
Confidence 566777777777776 3446899999999992 22344444 55667899999999999999
Q ss_pred HHHhhcccc--CCCCCCccccc-ccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeeeccccCCC
Q 000593 68 LVLLGERHA--TSKLGHLADMD-DATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERK 143 (1402)
Q Consensus 68 L~~~~~rha--TSKi~s~eDL~-~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~~~~~~~~ 143 (1402)
|..-...-+ +||.- .+.+. ....+.-.|..|.+++|.--|+ +|.|+||..+.. ++.+...++....... ....
T Consensus 118 LvnnLGTIAkSGtK~F-mealkea~ad~~~IGQFGvGFYSaylVAdkV~V~tk~~~~e-~y~Wes~~~gs~~v~~-~~~~ 194 (656)
T KOG0019|consen 118 LVNNLGTIAKSGSKAF-LEALKEAEAESNLIGQFGVGFYSAFMVADRVVVTTRHPADE-GLQWTSNGRGSYEIAE-ASGL 194 (656)
T ss_pred HHhhhhhhhhcccHHH-HHHHHhcccchhhhhhcccchhhhhhhhheeEEeeccCCCc-ceeeecCCCCceEEee-ccCc
Confidence 975443322 22220 11121 1112356799999999999998 699999987755 7777776654322221 2237
Q ss_pred CCceEEEEcccccChhHHHHHhhcCchHHHHHHHHHHHHHHh
Q 000593 144 DVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIAL 185 (1402)
Q Consensus 144 ~~GTTVtV~dLF~NlPVRRK~L~s~~kkel~~Ik~~L~~yAL 185 (1402)
.+||.|++. +|.-.. ---+-.+|++++..|+.
T Consensus 195 ~rGTki~l~---------lKe~~~-ey~ee~rikeiVKK~S~ 226 (656)
T KOG0019|consen 195 RTGTKIVIH---------LKEGDC-EFLEEKRIKEVVKKYSN 226 (656)
T ss_pred cccceEEee---------ehhhhh-hhccHhHHHHHHhhccc
Confidence 899999985 122111 12234668888888754
No 43
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL. NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
Probab=97.81 E-value=4.3e-05 Score=89.22 Aligned_cols=73 Identities=23% Similarity=0.228 Sum_probs=55.9
Q ss_pred HHHHHHHHHHccccCCCC------eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCccc
Q 000593 24 LTRVVEELVFNSVDAGAT------KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTF 95 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT------~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~ 95 (1402)
+.+|+.+||.||+++.+. .|.|.+. .+...|+|.|||.||+++.+..+|.++.|+|... . -
T Consensus 388 l~~vl~Nl~~NAik~~~~~~~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~~~iF~~f~~~~~~~----~-------~ 456 (494)
T TIGR02938 388 LRSLFKALVDNAIEAMNIKGWKRRELSITTALNGDLIVVSILDSGPGIPQDLRYKVFEPFFTTKGGS----R-------K 456 (494)
T ss_pred HHHHHHHHHHHHHHHhhccCCCcceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcCCCcccCCCC----C-------C
Confidence 678999999999998533 3666553 3456899999999999999999999999988542 1 1
Q ss_pred CccchhHHHHhhc
Q 000593 96 GFRGEALASISDV 108 (1402)
Q Consensus 96 GFRGEALaSIsaV 108 (1402)
| .|.+|+-...+
T Consensus 457 G-~GlGL~i~~~i 468 (494)
T TIGR02938 457 H-IGMGLSVAQEI 468 (494)
T ss_pred C-CcccHHHHHHH
Confidence 3 56777766555
No 44
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=97.75 E-value=3.9e-05 Score=93.13 Aligned_cols=81 Identities=21% Similarity=0.239 Sum_probs=66.4
Q ss_pred HHhccccccCHHHHHHHHHHccccCCC-----CeEEEEEe-c-CeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccc
Q 000593 14 TVRSGTVLFDLTRVVEELVFNSVDAGA-----TKVFVYVG-V-CNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADM 86 (1402)
Q Consensus 14 qIaSGeVI~sp~svVKELVENSLDAgA-----T~I~V~Id-~-g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL 86 (1402)
...++.....+.++|--||+||+||-+ +.|.+.+. . +..-|+|.|||+||+++..+.+|.+..++|-.
T Consensus 418 ~~p~~~~~~~litIlGNLidNA~eA~~~~~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~~iFe~G~Stk~~----- 492 (537)
T COG3290 418 QLPSELQPHDLVTILGNLIDNALEALLAPEENKEIELSLSDRGDELVIEVADTGPGIPPEVRDKIFEKGVSTKNT----- 492 (537)
T ss_pred CCCCccChHHHHHHHHHHHHHHHHHhhccCCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHHHHHhcCccccCC-----
Confidence 344566778889999999999999977 78999984 3 44689999999999999999999999998852
Q ss_pred cccCCCcccCccchhHHHHhhc
Q 000593 87 DDATGIGTFGFRGEALASISDV 108 (1402)
Q Consensus 87 ~~l~gI~T~GFRGEALaSIsaV 108 (1402)
.| ||.+|+-+.+.
T Consensus 493 --------~~-rGiGL~Lvkq~ 505 (537)
T COG3290 493 --------GG-RGIGLYLVKQL 505 (537)
T ss_pred --------CC-CchhHHHHHHH
Confidence 12 77888877655
No 45
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Probab=97.71 E-value=0.00012 Score=86.54 Aligned_cols=77 Identities=26% Similarity=0.315 Sum_probs=56.3
Q ss_pred CHHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCcc
Q 000593 23 DLTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFR 98 (1402)
Q Consensus 23 sp~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFR 98 (1402)
.+.+++..||.||+++.. ..|.|.+. .+...|.|.|||.||++++++.+|.++++.+..... ..-| .
T Consensus 317 ~l~~vl~NLl~NAik~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~~--------~~~G-~ 387 (430)
T PRK11006 317 QLRSAISNLVYNAVNHTPEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHIPRLTERFYRVDKARSR--------QTGG-S 387 (430)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHhccCcccccCCCCC--------CCCC-C
Confidence 367899999999999964 35777653 345789999999999999999999998876542110 1123 5
Q ss_pred chhHHHHhhc
Q 000593 99 GEALASISDV 108 (1402)
Q Consensus 99 GEALaSIsaV 108 (1402)
|.+|+-...+
T Consensus 388 GLGL~ivk~i 397 (430)
T PRK11006 388 GLGLAIVKHA 397 (430)
T ss_pred chHHHHHHHH
Confidence 7777765544
No 46
>PRK10604 sensor protein RstB; Provisional
Probab=97.69 E-value=0.0001 Score=87.70 Aligned_cols=56 Identities=23% Similarity=0.255 Sum_probs=49.4
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..|+..||.||+..+...|.|.+. .+...|.|.|||.||++++++.+|.++++..
T Consensus 320 l~~vl~NLl~NAik~~~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~~if~~f~r~~ 377 (433)
T PRK10604 320 MERVLDNLLNNALRYAHSRVRVSLLLDGNQACLIVEDDGPGIPPEERERVFEPFVRLD 377 (433)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEEECCEEEEEEEEcCCCCCHHHHhhcCCCCccCC
Confidence 6789999999999999888888874 4557899999999999999999999988754
No 47
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Probab=97.64 E-value=0.00013 Score=88.43 Aligned_cols=74 Identities=20% Similarity=0.290 Sum_probs=57.7
Q ss_pred CHHHHHHHHHHccccC------CCCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcc
Q 000593 23 DLTRVVEELVFNSVDA------GATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGT 94 (1402)
Q Consensus 23 sp~svVKELVENSLDA------gAT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T 94 (1402)
.+.+++.+||+||+++ +.+.|.|.+.. +...|.|.|||.||++++++.+|.+++|+|-. .
T Consensus 432 ~l~~vl~nLl~NAi~~~~~~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~~~~tk~~------------~ 499 (545)
T PRK15053 432 EFAAIVGNLLDNAFEASLRSDEGNKIVELFLSDEGDDVVIEVADQGCGVPESLRDKIFEQGVSTRAD------------E 499 (545)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCCceEEEEEEECCCEEEEEEEeCCCCcCHHHHHHHhCCCCCCCCC------------C
Confidence 3567899999999998 35678887743 44689999999999999999999999987642 1
Q ss_pred cCccchhHHHHhhc
Q 000593 95 FGFRGEALASISDV 108 (1402)
Q Consensus 95 ~GFRGEALaSIsaV 108 (1402)
.|-+|.+|+-+..+
T Consensus 500 ~~g~GlGL~ivk~i 513 (545)
T PRK15053 500 PGEHGIGLYLIASY 513 (545)
T ss_pred CCCceeCHHHHHHH
Confidence 23357778776655
No 48
>PRK10364 sensor protein ZraS; Provisional
Probab=97.62 E-value=0.00017 Score=85.89 Aligned_cols=71 Identities=28% Similarity=0.343 Sum_probs=55.5
Q ss_pred CHHHHHHHHHHccccCC--CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCcc
Q 000593 23 DLTRVVEELVFNSVDAG--ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFR 98 (1402)
Q Consensus 23 sp~svVKELVENSLDAg--AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFR 98 (1402)
.+.+++..||+||+++. ...|.|.+. .+...|.|.|||.||++++++.+|.++.++|.. | +
T Consensus 348 ~l~~il~NLl~NA~k~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~k~~--------------g-~ 412 (457)
T PRK10364 348 RLTQVLLNLYLNAIQAIGQHGVISVTASESGAGVKISVTDSGKGIAADQLEAIFTPYFTTKAE--------------G-T 412 (457)
T ss_pred HHHHHHHHHHHHHHHhcCCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHHHHHhCccccCCCC--------------C-C
Confidence 36788999999999984 456888774 345789999999999999999999998877621 2 4
Q ss_pred chhHHHHhhc
Q 000593 99 GEALASISDV 108 (1402)
Q Consensus 99 GEALaSIsaV 108 (1402)
|.+|+-+..+
T Consensus 413 GlGL~iv~~~ 422 (457)
T PRK10364 413 GLGLAVVHNI 422 (457)
T ss_pred cccHHHHHHH
Confidence 6667766555
No 49
>PRK09303 adaptive-response sensory kinase; Validated
Probab=97.60 E-value=0.00015 Score=85.17 Aligned_cols=57 Identities=16% Similarity=0.179 Sum_probs=47.1
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe---cCeeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG---VCNCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id---~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
+.+|+..||.||+.+.. ..|.|.+. .+...|.|.|||.||+++++..+|.++.+.+-
T Consensus 273 l~qvl~NLl~NAik~~~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~~~iF~pf~~~~~ 334 (380)
T PRK09303 273 IRQVLLNLLDNAIKYTPEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQERIFEDRVRLPR 334 (380)
T ss_pred HHHHHHHHHHHHHhcCCCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHHHHHccCceeCCC
Confidence 57899999999999875 46777652 23468999999999999999999999887754
No 50
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Probab=97.56 E-value=0.00021 Score=84.28 Aligned_cols=77 Identities=19% Similarity=0.177 Sum_probs=57.0
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 24 LTRVVEELVFNSVDAGAT--KVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT--~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
+.+++.+||.||+.+... .|.|.+. .+...|.|.|||.||++++++.++.++.+.+...- ...|-.|
T Consensus 353 l~qvl~nll~NAi~~~~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf~~~~~~~~~~~---------~~~~g~G 423 (466)
T PRK10549 353 LMQLFNNLLENSLRYTDSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLFERFYRTEGSRN---------RASGGSG 423 (466)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhccCcccCCCCcC---------CCCCCCc
Confidence 568999999999997543 5777663 45578999999999999999999999887764321 1122257
Q ss_pred hhHHHHhhcc
Q 000593 100 EALASISDVS 109 (1402)
Q Consensus 100 EALaSIsaVS 109 (1402)
.+|+-+..+.
T Consensus 424 lGL~iv~~i~ 433 (466)
T PRK10549 424 LGLAICLNIV 433 (466)
T ss_pred HHHHHHHHHH
Confidence 8887665553
No 51
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Probab=97.56 E-value=0.0001 Score=90.17 Aligned_cols=59 Identities=29% Similarity=0.325 Sum_probs=51.7
Q ss_pred cCHHHHHHHHHHccccCCCC----eEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 22 FDLTRVVEELVFNSVDAGAT----KVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 22 ~sp~svVKELVENSLDAgAT----~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
.++.+|+--||.||+||=+. .|.|.+ +.+...|+|.|||.||+++-+..+|+++.|+|-
T Consensus 496 iRLeQVLvNLl~NALDA~~~~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~~~lFePF~TtK~ 560 (603)
T COG4191 496 IRLEQVLVNLLQNALDAMAGQEDRRLSIRAQREGGQVVLTVRDNGPGIAPEALPHLFEPFFTTKP 560 (603)
T ss_pred hhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEecCCeEEEEEccCCCCCCHHHHHhhcCCccccCc
Confidence 46899999999999999544 688877 345678999999999999999999999999995
No 52
>PRK11100 sensory histidine kinase CreC; Provisional
Probab=97.43 E-value=0.00048 Score=80.77 Aligned_cols=75 Identities=23% Similarity=0.226 Sum_probs=56.7
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
+..++.+||+||+.++. +.|.|.+. .+...|.|.|||.||+++++..++.++.+.+.... ..-| .|
T Consensus 369 l~~vl~nli~Na~~~~~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~~i~~~~~~~~~~~~---------~~~~-~G 438 (475)
T PRK11100 369 LRQALGNLLDNAIDFSPEGGTITLSAEVDGEQVALSVEDQGPGIPDYALPRIFERFYSLPRPAN---------GRKS-TG 438 (475)
T ss_pred HHHHHHHHHHHHHHhCCCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHHHHccCCCCCC---------CCCC-cc
Confidence 67899999999999753 57888774 44578999999999999999999999887754210 1113 57
Q ss_pred hhHHHHhhc
Q 000593 100 EALASISDV 108 (1402)
Q Consensus 100 EALaSIsaV 108 (1402)
.+|+.+..+
T Consensus 439 lGL~i~~~~ 447 (475)
T PRK11100 439 LGLAFVREV 447 (475)
T ss_pred hhHHHHHHH
Confidence 777766555
No 53
>PRK11086 sensory histidine kinase DcuS; Provisional
Probab=97.42 E-value=0.00034 Score=83.90 Aligned_cols=57 Identities=23% Similarity=0.311 Sum_probs=47.8
Q ss_pred CHHHHHHHHHHccccCC----CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 23 DLTRVVEELVFNSVDAG----ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 23 sp~svVKELVENSLDAg----AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
.+.+++.+|++||+++. ...|.|.+. .+...|.|.|||.||++++++.+|.++.++|
T Consensus 433 ~l~~vl~nLl~NAi~~~~~~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~~~iF~~~~~~~ 495 (542)
T PRK11086 433 ELITILGNLIENALEAVGGEEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEIDAIFDKGYSTK 495 (542)
T ss_pred HHHHHHHHHHHHHHHHhhcCCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHHhCCCccC
Confidence 47789999999999984 346777774 3456899999999999999999999988776
No 54
>TIGR01386 cztS_silS_copS heavy metal sensor kinase. Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
Probab=97.42 E-value=0.0006 Score=79.75 Aligned_cols=76 Identities=21% Similarity=0.263 Sum_probs=57.8
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
+..++.+||.||++++. ..|.|.+.. +...|+|.|||.||+++.+..++.++++++..... .+-| .|
T Consensus 354 l~~~~~nll~Nai~~~~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~~~~~~~~~~~~--------~~~g-~G 424 (457)
T TIGR01386 354 FRRAISNLLSNALRHTPDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFDRFYRVDPARSN--------SGEG-TG 424 (457)
T ss_pred HHHHHHHHHHHHHHcCCCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhccccccCCcccCC--------CCCC-cc
Confidence 56789999999999873 468887743 34689999999999999999999999988764311 1223 57
Q ss_pred hhHHHHhhc
Q 000593 100 EALASISDV 108 (1402)
Q Consensus 100 EALaSIsaV 108 (1402)
.+|+-+..+
T Consensus 425 lGL~i~~~~ 433 (457)
T TIGR01386 425 LGLAIVRSI 433 (457)
T ss_pred ccHHHHHHH
Confidence 777766555
No 55
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Probab=97.37 E-value=0.00095 Score=60.35 Aligned_cols=51 Identities=24% Similarity=0.354 Sum_probs=42.7
Q ss_pred HHHHHHHHHccccCCC---CeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccc
Q 000593 25 TRVVEELVFNSVDAGA---TKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERH 75 (1402)
Q Consensus 25 ~svVKELVENSLDAgA---T~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rh 75 (1402)
..++.|||+||+++++ ..|.|.+.. +...|.|.|+|.||++..+...+.++
T Consensus 2 ~~~~~~ll~Na~~~~~~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~~~~ 57 (103)
T cd00075 2 QQVLLNLLSNAIKHTPEGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIFERF 57 (103)
T ss_pred HHHHHHHHHHHHHhCcCCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHhhhh
Confidence 5789999999999987 567777653 35789999999999999998887765
No 56
>KOG0020 consensus Endoplasmic reticulum glucose-regulated protein (GRP94/endoplasmin), HSP90 family [Posttranslational modification, protein turnover, chaperones]
Probab=97.35 E-value=0.00068 Score=80.92 Aligned_cols=147 Identities=17% Similarity=0.151 Sum_probs=91.8
Q ss_pred HHHHHHHHHccccCC---------------CC---eEEEEEecCeeEEEEEeCCCCCCHHHHHHhhc---cccCC----C
Q 000593 25 TRVVEELVFNSVDAG---------------AT---KVFVYVGVCNCYVKVVDDGSGISRDGLVLLGE---RHATS----K 79 (1402)
Q Consensus 25 ~svVKELVENSLDAg---------------AT---~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~---rhaTS----K 79 (1402)
.--++|||.||-||= -+ .|.|..|.....+.|.|.|.||+.+||..-.. +..|| |
T Consensus 97 eIFLRELISNASDAlDKIRllaLtd~~~L~~~~el~ikIK~Dke~klLhi~DtGiGMT~edLi~NLGTIAkSGTs~Fl~K 176 (785)
T KOG0020|consen 97 EIFLRELISNASDALDKIRLLALTDKDVLGETEELEIKIKADKEKKLLHITDTGIGMTREDLIKNLGTIAKSGTSEFLEK 176 (785)
T ss_pred HHHHHHHHhhhhhhhhheeeeeccChhHhCcCcceEEEEeechhhCeeeEecccCCccHHHHHHhhhhhhcccHHHHHHH
Confidence 346899999999992 11 45555677777899999999999999864322 34454 3
Q ss_pred CCCcccccccCCCcccCccchhHHHHhhcc-cEEEEEEecCCCceEEEEEeCceeeee-ccccCCCCCceEEEEcccccC
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLYL-GIDDERKDVGTTVVSRDLFYN 157 (1402)
Q Consensus 80 i~s~eDL~~l~gI~T~GFRGEALaSIsaVS-~LeI~SRt~~~~~g~~i~~~~gk~~~~-~~~~~~~~~GTTVtV~dLF~N 157 (1402)
.....+...+. -.-.|..|++++|..-|+ +|.|+|++.+.. -|.+.-+....... .+....-.+||+|++.
T Consensus 177 m~~~~~~~~~~-~dlIGQFGVGFYsAfLVAD~vvVtsKhNdD~-QyiWESdan~FsvseDprg~tL~RGt~ItL~----- 249 (785)
T KOG0020|consen 177 MQDSGDSEGLM-NDLIGQFGVGFYSAFLVADRVVVTSKHNDDS-QYIWESDANSFSVSEDPRGNTLGRGTEITLY----- 249 (785)
T ss_pred hhccccchhhH-HHHHHhcchhhhhhhhhcceEEEEeccCCcc-ceeeeccCcceeeecCCCCCcccCccEEEEE-----
Confidence 33222222110 135688899999999998 588888876543 34444443332111 1112234799999985
Q ss_pred hhHHHHHhhcC--chHHHHHHHHHHHHHHh
Q 000593 158 QPVRRKYMQSS--PKKVLHSVKKCVLRIAL 185 (1402)
Q Consensus 158 lPVRRK~L~s~--~kkel~~Ik~~L~~yAL 185 (1402)
|+.. .--+...+++++..|+-
T Consensus 250 -------LkeEA~dyLE~dtlkeLvkkYSq 272 (785)
T KOG0020|consen 250 -------LKEEAGDYLEEDTLKELVKKYSQ 272 (785)
T ss_pred -------ehhhhhhhcchhHHHHHHHHHHH
Confidence 1111 12345678899999874
No 57
>PRK09470 cpxA two-component sensor protein; Provisional
Probab=97.34 E-value=0.00076 Score=79.29 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=48.2
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..++.+||+||+..+.+.|.|.+. .+...|+|.|||.||+++++..++.++.+.+
T Consensus 354 l~~~l~nli~NA~~~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~~~~~~ 411 (461)
T PRK09470 354 LASALENIVRNALRYSHTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIFRPFYRVD 411 (461)
T ss_pred HHHHHHHHHHHHHHhCCCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhcCCCccCC
Confidence 4678999999999999998888874 4456899999999999999999999977654
No 58
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=97.33 E-value=0.00045 Score=74.88 Aligned_cols=59 Identities=20% Similarity=0.251 Sum_probs=52.2
Q ss_pred CHHHHHHHHHHccccCC-CCeEEEEEecC--eeEEEEEeCCCCCCHHHHHHhhccccCCCCC
Q 000593 23 DLTRVVEELVFNSVDAG-ATKVFVYVGVC--NCYVKVVDDGSGISRDGLVLLGERHATSKLG 81 (1402)
Q Consensus 23 sp~svVKELVENSLDAg-AT~I~V~Id~g--~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~ 81 (1402)
.+.+++..||.||++|. ...|.|.+... ...|.|.|||.||+++.++.++.++.|+|..
T Consensus 228 ~l~~vl~nLi~NAi~~~~~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~~~if~~~~~~~~~ 289 (336)
T COG0642 228 RLRQVLVNLLSNAIKYTPGGEITISVRQDDEQVTISVEDTGPGIPEEELERIFEPFFRTDKS 289 (336)
T ss_pred HHHHHHHHHHHHHhccCCCCeEEEEEEecCCeEEEEEEcCCCCCCHHHHHHhccCeeccCCC
Confidence 37789999999999999 59999988654 3789999999999999999999999999864
No 59
>PRK09467 envZ osmolarity sensor protein; Provisional
Probab=97.25 E-value=0.00096 Score=78.27 Aligned_cols=55 Identities=27% Similarity=0.364 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+..++..||+||+..+...|.|.+. .+...|+|.|||.||+++++..++.+++..
T Consensus 332 l~~il~NLl~NA~k~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~~~f~~~ 388 (435)
T PRK09467 332 IKRALANLVVNAARYGNGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLFQPFTRG 388 (435)
T ss_pred HHHHHHHHHHHHHHhCCCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhcCCcccC
Confidence 4678999999999999999999874 344689999999999999999999997653
No 60
>PRK10815 sensor protein PhoQ; Provisional
Probab=97.19 E-value=0.0011 Score=80.87 Aligned_cols=55 Identities=20% Similarity=0.173 Sum_probs=47.3
Q ss_pred HHHHHHHHHHccccCCCCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 24 LTRVVEELVFNSVDAGATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+..|+..||+||+++....|.|.+. .+...|.|.|||.||++++++.+|.++.+.
T Consensus 379 l~~vl~NLi~NAik~~~~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~~iF~~f~~~ 435 (485)
T PRK10815 379 FMEVMGNVLDNACKYCLEFVEISARQTDEHLHIVVEDDGPGIPESKRELIFDRGQRA 435 (485)
T ss_pred HHHHHHHHHHHHHHhcCCcEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccC
Confidence 5779999999999998888888774 345689999999999999999999987654
No 61
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase. Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
Probab=97.16 E-value=0.001 Score=84.03 Aligned_cols=70 Identities=26% Similarity=0.277 Sum_probs=54.8
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHH-HHHhhccccCCCCCCcccccccCCCcccCcc
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDG-LVLLGERHATSKLGHLADMDDATGIGTFGFR 98 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eD-L~~~~~rhaTSKi~s~eDL~~l~gI~T~GFR 98 (1402)
+.+++.+||.||+++.. ..|.|.+. .+...|+|.|||.||+++. .+.+|.++.++|-. | .
T Consensus 580 l~~vl~nLl~NAik~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~~~~--------------G-~ 644 (679)
T TIGR02916 580 LERVLGHLVQNALEATPGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTTKGA--------------G-M 644 (679)
T ss_pred HHHHHHHHHHHHHHhCCCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCCCCC--------------C-c
Confidence 56799999999999964 46888775 4557899999999999999 88999998877531 2 4
Q ss_pred chhHHHHhhc
Q 000593 99 GEALASISDV 108 (1402)
Q Consensus 99 GEALaSIsaV 108 (1402)
|.+|+....+
T Consensus 645 GLGL~i~~~i 654 (679)
T TIGR02916 645 GIGVYECRQY 654 (679)
T ss_pred chhHHHHHHH
Confidence 6777766555
No 62
>PRK15347 two component system sensor kinase SsrA; Provisional
Probab=97.13 E-value=0.0016 Score=83.97 Aligned_cols=56 Identities=18% Similarity=0.140 Sum_probs=47.3
Q ss_pred HHHHHHHHHHccccCC-CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAG-ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAg-AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+.+++..||.||+++. ...|.|.+. .+...|+|.|||.||++++++.+|.++.+.+
T Consensus 514 l~~il~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 572 (921)
T PRK15347 514 LRQILVNLLGNAVKFTETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQQQIFTPFYQAD 572 (921)
T ss_pred HHHHHHHHHHHHhhcCCCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhcCcccCC
Confidence 6789999999999975 346888774 4456899999999999999999999988765
No 63
>PRK10337 sensor protein QseC; Provisional
Probab=97.12 E-value=0.0013 Score=77.57 Aligned_cols=54 Identities=26% Similarity=0.375 Sum_probs=43.9
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEecCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGAT--KVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT--~I~V~Id~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..++.+||+||++.+.. .|.|.+.. ..|.|.|||.||++++++.++.++.+.+
T Consensus 353 l~~vl~Nli~NA~k~~~~~~~i~i~~~~--~~i~i~D~G~Gi~~~~~~~if~~f~~~~ 408 (449)
T PRK10337 353 LSLLVRNLLDNAIRYSPQGSVVDVTLNA--RNFTVRDNGPGVTPEALARIGERFYRPP 408 (449)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEe--eEEEEEECCCCCCHHHHHHhcccccCCC
Confidence 456899999999998765 45555543 3699999999999999999999987653
No 64
>PRK10755 sensor protein BasS/PmrB; Provisional
Probab=97.10 E-value=0.0021 Score=73.90 Aligned_cols=55 Identities=18% Similarity=0.219 Sum_probs=45.6
Q ss_pred HHHHHHHHHHccccCC--CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 24 LTRVVEELVFNSVDAG--ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 24 p~svVKELVENSLDAg--AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+..++..||+||+.++ .+.|.|.+. .+...|.|.|||.||++++++.++.++.+.
T Consensus 248 l~~il~nLi~NA~k~~~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 306 (356)
T PRK10755 248 LRLLLRNLVENAHRYSPEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGELSKAFVRM 306 (356)
T ss_pred HHHHHHHHHHHHHhhCCCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHhCCCeEeC
Confidence 3579999999999986 456888773 455789999999999999999999987643
No 65
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR. Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
Probab=97.08 E-value=0.0021 Score=71.16 Aligned_cols=56 Identities=25% Similarity=0.235 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..++.+||.||++++. ..|.|.+. .+...|.|.|||.||+++.+..++.++.+.+
T Consensus 230 l~~vl~nll~Nai~~~~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~~~if~~~~~~~ 289 (333)
T TIGR02966 230 LRSAFSNLVSNAIKYTPEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHLPRLTERFYRVD 289 (333)
T ss_pred HHHHHHHHHHHhheeCCCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHHhhhccCceecC
Confidence 56799999999999864 45777664 3446899999999999999999999987654
No 66
>smart00387 HATPase_c Histidine kinase-like ATPases. Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
Probab=97.03 E-value=0.0066 Score=55.79 Aligned_cols=57 Identities=21% Similarity=0.277 Sum_probs=47.6
Q ss_pred CHHHHHHHHHHccccCCCC--eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 23 DLTRVVEELVFNSVDAGAT--KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 23 sp~svVKELVENSLDAgAT--~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
.+..++.||+.|++++.++ .|.|.+.. +...|.|.|+|.||+.+.+..++.++..++
T Consensus 5 ~l~~~~~~l~~n~~~~~~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~~~~~~~ 65 (111)
T smart00387 5 RLRQVLSNLLDNAIKYTPEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFEPFFRTD 65 (111)
T ss_pred HHHHHHHHHHHHHHhcCCCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhcCeEECC
Confidence 4678999999999999886 78887753 456899999999999999999888766554
No 67
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Probab=97.00 E-value=0.0026 Score=81.18 Aligned_cols=87 Identities=22% Similarity=0.118 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEe---cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCcc
Q 000593 23 DLTRVVEELVFNSVDAGA-TKVFVYVG---VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFR 98 (1402)
Q Consensus 23 sp~svVKELVENSLDAgA-T~I~V~Id---~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFR 98 (1402)
.+.+++..||.||+++.. ..|.|.+. .+...|.|.|||.||++++++.+|.++.+.|-..-. ...|-.
T Consensus 398 ~l~qvl~NLl~NAik~~~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~~~~~--------~~~~Gt 469 (779)
T PRK11091 398 RLRQILWNLISNAVKFTQQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIFAMYYQVKDSHGG--------KPATGT 469 (779)
T ss_pred HHHHHHHHHHHHHHHhCCCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHHHHhhcccCCCCC--------CCCCCc
Confidence 366899999999999863 45777663 334689999999999999999999999988633211 112225
Q ss_pred chhHHHHhhc-----ccEEEEEEe
Q 000593 99 GEALASISDV-----SLLEIITKA 117 (1402)
Q Consensus 99 GEALaSIsaV-----S~LeI~SRt 117 (1402)
|.+|+-...+ +.+++.|..
T Consensus 470 GLGL~i~~~iv~~~gG~i~v~s~~ 493 (779)
T PRK11091 470 GIGLAVSKRLAQAMGGDITVTSEE 493 (779)
T ss_pred chHHHHHHHHHHHcCCEEEEEecC
Confidence 7777754444 356666653
No 68
>PRK11360 sensory histidine kinase AtoS; Provisional
Probab=96.98 E-value=0.0017 Score=77.81 Aligned_cols=56 Identities=25% Similarity=0.293 Sum_probs=46.3
Q ss_pred HHHHHHHHHHccccCCCC--eEEEEEe--cCe-eEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGAT--KVFVYVG--VCN-CYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT--~I~V~Id--~g~-~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..++.+||.||+.+... .|.|.+. .+. ..|.|.|||.||+++.+..+|.++.++|
T Consensus 501 l~~~~~nli~na~~~~~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~~~~f~~~~~~~ 561 (607)
T PRK11360 501 LKQVLLNILINAVQAISARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELLKKIFDPFFTTK 561 (607)
T ss_pred HHHHHHHHHHHHHHHhcCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHHhhhcCCceeCC
Confidence 778999999999998544 5666653 344 7899999999999999999999988765
No 69
>TIGR01925 spIIAB anti-sigma F factor. This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
Probab=96.96 E-value=0.0039 Score=62.83 Aligned_cols=57 Identities=33% Similarity=0.402 Sum_probs=42.3
Q ss_pred ccCHHHHHHHHHHccccCC-----CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 21 LFDLTRVVEELVFNSVDAG-----ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 21 I~sp~svVKELVENSLDAg-----AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+..+..++.||+.||+..+ ...|.|.+. .+...|.|.|||.||+ ++..++.+..+++
T Consensus 37 ~~~l~~~l~eli~Nai~h~~~~~~~~~I~v~~~~~~~~~~i~I~D~G~gi~--~~~~~~~~~~~~~ 100 (137)
T TIGR01925 37 LTDIKTAVSEAVTNAIIHGYEENCEGVVYISATIEDHEVYITVRDEGIGIE--NLEEAREPLYTSK 100 (137)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCCCcEEEEEEEEeCCEEEEEEEEcCCCcC--chhHhhCCCcccC
Confidence 4456789999999999753 356888774 3456899999999998 3556666665554
No 70
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Probab=96.70 E-value=0.0064 Score=79.69 Aligned_cols=58 Identities=19% Similarity=0.213 Sum_probs=47.4
Q ss_pred CHHHHHHHHHHccccCCC-CeEEEEEec-----CeeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 23 DLTRVVEELVFNSVDAGA-TKVFVYVGV-----CNCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 23 sp~svVKELVENSLDAgA-T~I~V~Id~-----g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
.+.+|+..||.||+++.+ ..|.|.+.. +...|.|.|+|.||++++++.+|.++.+.|.
T Consensus 565 ~L~QVL~NLL~NAik~t~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l~~IFePF~t~~~ 628 (894)
T PRK10618 565 ALRKILLLLLNYAITTTAYGKITLEVDQDESSPDRLTIRILDTGAGVSIKELDNLHFPFLNQTQ 628 (894)
T ss_pred HHHHHHHHHHHHHHHhCCCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHHHHhcCccccCCC
Confidence 367899999999999754 357777642 2368999999999999999999999988664
No 71
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Probab=96.66 E-value=0.0074 Score=68.80 Aligned_cols=56 Identities=16% Similarity=0.192 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccccCC---CCeEEEEEecC------------eeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAG---ATKVFVYVGVC------------NCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAg---AT~I~V~Id~g------------~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+.+++..||.||+++. ...|.|.+... ...|.|.|||.||+++.+..+|.++.|+|
T Consensus 238 l~~vl~nLl~NA~~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~iF~~~~~~~ 308 (348)
T PRK11073 238 IEQVLLNIVRNALQALGPEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQDTLFYPMVSGR 308 (348)
T ss_pred HHHHHHHHHHHHHHHhccCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHHhhccCCcccCC
Confidence 6899999999999874 34566654211 13699999999999999999999988776
No 72
>PRK13557 histidine kinase; Provisional
Probab=96.65 E-value=0.0055 Score=73.25 Aligned_cols=56 Identities=21% Similarity=0.223 Sum_probs=44.2
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe----------------c-CeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG----------------V-CNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id----------------~-g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+.+++..||.||+++.. ..|.|.+. . +...|.|.|||.||+++.+..+|.++.+.|
T Consensus 278 l~~vl~nll~NA~~~~~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~~~if~~~~~~~ 352 (540)
T PRK13557 278 AEVALLNVLINARDAMPEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEILARVMDPFFTTK 352 (540)
T ss_pred HHHHHHHHHHHHHHhcccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHHHhccCCCcccC
Confidence 56889999999999853 34555432 1 235799999999999999999999988765
No 73
>PRK10490 sensor protein KdpD; Provisional
Probab=96.65 E-value=0.0053 Score=80.44 Aligned_cols=57 Identities=21% Similarity=0.230 Sum_probs=47.5
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
+.+++..||.||+.+.. +.|.|.+. .+...|.|.|||.||++++++.+|.++.+.+.
T Consensus 779 L~qVL~NLL~NAik~s~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFepF~~~~~ 839 (895)
T PRK10490 779 FERVLINLLENAVKYAGAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQEQLIFDKFARGNK 839 (895)
T ss_pred HHHHHHHHHHHHHHhCCCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHHHHhcCCCccCCC
Confidence 57899999999999853 35777664 44578999999999999999999999887653
No 74
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Probab=96.60 E-value=0.0049 Score=79.75 Aligned_cols=55 Identities=18% Similarity=0.223 Sum_probs=45.9
Q ss_pred HHHHHHHHHHccccCC-CCeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 24 LTRVVEELVFNSVDAG-ATKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 24 p~svVKELVENSLDAg-AT~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+.+++..||.||+.+. ...|.|.+. .+...|.|.|||.||+++++..+|.++.+.
T Consensus 562 l~qil~NLl~NAik~~~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~ 619 (914)
T PRK11466 562 IRQVITNLLSNALRFTDEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKLAEIFQPFVQV 619 (914)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCHHHHHHHhchhhcC
Confidence 5679999999999975 456888774 344689999999999999999999998754
No 75
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase. This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
Probab=96.60 E-value=0.0076 Score=77.02 Aligned_cols=76 Identities=13% Similarity=0.102 Sum_probs=55.9
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
+..++..||+||+++.. +.|.|.+. .+...|.|.|||.||++++++.+|.++.+.|-.... ..-| .|
T Consensus 598 L~~il~NLI~NAik~s~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~~~IFe~F~t~~~~~~~--------~~~g-~G 668 (703)
T TIGR03785 598 IAQMLDKLVDNAREFSPEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMGEQLFDSMVSVRDQGAQ--------DQPH-LG 668 (703)
T ss_pred HHHHHHHHHHHHHHHCCCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHHHHHhCCCeecCCCCCC--------CCCC-cc
Confidence 57899999999999753 45777764 345689999999999999999999999887643211 1113 46
Q ss_pred hhHHHHhhc
Q 000593 100 EALASISDV 108 (1402)
Q Consensus 100 EALaSIsaV 108 (1402)
.+|+-...+
T Consensus 669 LGL~Ivr~I 677 (703)
T TIGR03785 669 LGLYIVRLI 677 (703)
T ss_pred HHHHHHHHH
Confidence 777765554
No 76
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS. This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
Probab=96.55 E-value=0.0064 Score=78.99 Aligned_cols=56 Identities=21% Similarity=0.255 Sum_probs=47.0
Q ss_pred HHHHHHHHHHccccCCC-CeEEEEE--ecCe-eEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAGA-TKVFVYV--GVCN-CYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAgA-T~I~V~I--d~g~-~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+.+++..||.||+.... ..|.|.+ ..+. ..|.|.|||.||+++++..+|.++.+.+
T Consensus 580 l~~il~nLi~NAik~~~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~ 639 (968)
T TIGR02956 580 IRQVLINLVGNAIKFTDRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQATLFDAFTQAD 639 (968)
T ss_pred HHHHHHHHHHHHHhhCCCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHHHHHHhhhhccC
Confidence 56899999999998853 4577766 3445 7899999999999999999999988876
No 77
>PRK13837 two-component VirA-like sensor kinase; Provisional
Probab=96.50 E-value=0.01 Score=76.98 Aligned_cols=56 Identities=27% Similarity=0.290 Sum_probs=46.6
Q ss_pred HHHHHHHHHHccccCC--CCeEEEEEec-----------------CeeEEEEEeCCCCCCHHHHHHhhccccCCC
Q 000593 24 LTRVVEELVFNSVDAG--ATKVFVYVGV-----------------CNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 24 p~svVKELVENSLDAg--AT~I~V~Id~-----------------g~~~I~V~DNG~GIs~eDL~~~~~rhaTSK 79 (1402)
+.+++..||.||+++. ...|.|.+.. +...|.|.|||.||++++++.+|.++.|+|
T Consensus 561 L~qvl~NLl~NAik~~~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~~~iFe~F~~~~ 635 (828)
T PRK13837 561 LQQVLMNLCSNAAQAMDGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVLPHIFEPFFTTR 635 (828)
T ss_pred HHHHHHHHHHHHHHHcccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHHHHhhCCcccCC
Confidence 6789999999999974 4567777632 235799999999999999999999998775
No 78
>PRK09835 sensor kinase CusS; Provisional
Probab=96.46 E-value=0.016 Score=68.97 Aligned_cols=57 Identities=19% Similarity=0.183 Sum_probs=47.6
Q ss_pred HHHHHHHHHHccccCCC--CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 24 LTRVVEELVFNSVDAGA--TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 24 p~svVKELVENSLDAgA--T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
+..++.+||.||+.+.. ..|.|.+. .+...|.|.|||.||++++++.++.+++++..
T Consensus 376 l~~vl~nll~Na~~~~~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~if~~f~~~~~ 436 (482)
T PRK09835 376 LRRAISNLLSNALRYTPAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRLFDRFYRVDP 436 (482)
T ss_pred HHHHHHHHHHHHHhcCCCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHHhCCcccCCC
Confidence 67899999999999853 35777763 44568999999999999999999999887753
No 79
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Probab=96.37 E-value=0.01 Score=76.50 Aligned_cols=85 Identities=18% Similarity=0.193 Sum_probs=56.5
Q ss_pred HHHHHHHHHHccccCCC-CeEEEEEe--c---C--eeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCccc
Q 000593 24 LTRVVEELVFNSVDAGA-TKVFVYVG--V---C--NCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTF 95 (1402)
Q Consensus 24 p~svVKELVENSLDAgA-T~I~V~Id--~---g--~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~ 95 (1402)
+.+++..||.||+.+.. ..|.|.+. . + ...|.|.|||.||+++++..+|.++....-... ...
T Consensus 409 l~~vl~NLl~NAik~~~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if~~f~~~~~~~~---------~~~ 479 (919)
T PRK11107 409 LQQIITNLVGNAIKFTESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLFQAFRQADASIS---------RRH 479 (919)
T ss_pred HHHHHHHHHHHHhhcCCCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHhhhhccCCCCCC---------CCC
Confidence 56899999999998853 34555542 1 1 257999999999999999999999875532210 122
Q ss_pred CccchhHHHHhhc-----ccEEEEEEe
Q 000593 96 GFRGEALASISDV-----SLLEIITKA 117 (1402)
Q Consensus 96 GFRGEALaSIsaV-----S~LeI~SRt 117 (1402)
|-.|.+|+-...+ +.++|.|..
T Consensus 480 ~g~GLGL~i~~~i~~~~gG~i~v~s~~ 506 (919)
T PRK11107 480 GGTGLGLVITQKLVNEMGGDISFHSQP 506 (919)
T ss_pred CCcchhHHHHHHHHHHhCCEEEEEecC
Confidence 3357777644333 246665543
No 80
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Probab=96.21 E-value=0.012 Score=78.48 Aligned_cols=58 Identities=19% Similarity=0.246 Sum_probs=45.3
Q ss_pred CHHHHHHHHHHccccCCCC-eEEEEE-----ecC--eeEEEEEeCCCCCCHHHHHHhhccccCCCC
Q 000593 23 DLTRVVEELVFNSVDAGAT-KVFVYV-----GVC--NCYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 23 sp~svVKELVENSLDAgAT-~I~V~I-----d~g--~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi 80 (1402)
.+.+|+..||.||+++... .|.|.+ +.+ ...|.|.|||.||+++++..+|.++.+++.
T Consensus 828 ~l~qvl~NLl~NAik~~~~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF~~f~~~~~ 893 (1197)
T PRK09959 828 AFKQVLSNLLSNALKFTTEGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQQQLFKRYSQTSA 893 (1197)
T ss_pred HHHHHHHHHHHHHHHhCCCCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHHHHhhcccccccc
Confidence 3678999999999998643 344443 122 257899999999999999999999988754
No 81
>PRK04069 serine-protein kinase RsbW; Provisional
Probab=96.06 E-value=0.016 Score=61.10 Aligned_cols=59 Identities=17% Similarity=0.079 Sum_probs=44.7
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 20 VLFDLTRVVEELVFNSVDAGA-----TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 20 VI~sp~svVKELVENSLDAgA-----T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
.+..+.-||.|++.||+.-|- ..|.|.+ ..+...|.|.|+|.||+++.+...+.++.+.
T Consensus 39 ~~~~l~lav~Ea~~Nai~Hg~~~~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~~~~p~~~~ 104 (161)
T PRK04069 39 DIEDMKIAVSEACTNAVQHAYKEDEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKSKLGPYDIS 104 (161)
T ss_pred HHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEECCEEEEEEEECCcCCChHHhccccCCCCCC
Confidence 345577899999999997763 3577766 4556899999999999988877666655544
No 82
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Probab=96.01 E-value=0.044 Score=72.30 Aligned_cols=85 Identities=20% Similarity=0.202 Sum_probs=58.7
Q ss_pred HHHHHHHHHHccccCCC-CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccch
Q 000593 24 LTRVVEELVFNSVDAGA-TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRGE 100 (1402)
Q Consensus 24 p~svVKELVENSLDAgA-T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRGE 100 (1402)
+.+++..||.||+.+.. ..|.|.+ +.+...|.|.|||.||+++++..+|.++.+.+-... . ..-| .|.
T Consensus 563 L~qvl~NLl~NAik~t~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~~~lFepF~~~~~~~~----~----~~~G-tGL 633 (924)
T PRK10841 563 LQQVISNLLSNAIKFTDTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEVVRLFDPFFQVGTGVQ----R----NFQG-TGL 633 (924)
T ss_pred HHHHHHHHHHHHHhhCCCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHHHHHhcccccCCCCCC----C----CCCC-eeh
Confidence 56899999999999743 3566665 445578999999999999999999999877543210 0 1113 466
Q ss_pred hHHHHhhc-----ccEEEEEEe
Q 000593 101 ALASISDV-----SLLEIITKA 117 (1402)
Q Consensus 101 ALaSIsaV-----S~LeI~SRt 117 (1402)
+|+-...+ +.++|.|..
T Consensus 634 GL~I~k~lv~~~gG~I~v~S~~ 655 (924)
T PRK10841 634 GLAICEKLINMMDGDISVDSEP 655 (924)
T ss_pred hHHHHHHHHHHCCCEEEEEEcC
Confidence 66644333 357776653
No 83
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Probab=95.59 E-value=0.031 Score=71.71 Aligned_cols=49 Identities=33% Similarity=0.418 Sum_probs=36.7
Q ss_pred ccCHHHHHHHHHHccccCC--------------CCeEEEEEe-cC-eeEEEEEeCCCCCCHHHHH
Q 000593 21 LFDLTRVVEELVFNSVDAG--------------ATKVFVYVG-VC-NCYVKVVDDGSGISRDGLV 69 (1402)
Q Consensus 21 I~sp~svVKELVENSLDAg--------------AT~I~V~Id-~g-~~~I~V~DNG~GIs~eDL~ 69 (1402)
|..+..-+--||.||+|-| ..+|.++-. .| ..-|+|.|||.||+++-+.
T Consensus 430 lE~l~dPL~HLvRNAvDHGIE~pE~R~a~GKp~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 430 LERLGDPLTHLVRNAVDHGIETPEERRAAGKPEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred HHHhcccHHHHHhcchhccCCCHHHHHHcCCCCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHH
Confidence 3444556677999999998 336888773 33 3689999999999998664
No 84
>PRK10547 chemotaxis protein CheA; Provisional
Probab=95.33 E-value=0.063 Score=68.62 Aligned_cols=44 Identities=30% Similarity=0.504 Sum_probs=34.1
Q ss_pred HHHHHHHHccccCCC--------------CeEEEEEe--cCeeEEEEEeCCCCCCHHHHH
Q 000593 26 RVVEELVFNSVDAGA--------------TKVFVYVG--VCNCYVKVVDDGSGISRDGLV 69 (1402)
Q Consensus 26 svVKELVENSLDAgA--------------T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~ 69 (1402)
..+..||.||+|.|- ..|.|... .+...|.|.|||.||+++.+.
T Consensus 388 dpL~hLirNAidHgie~p~~R~~~gkp~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 388 DPLTHLVRNSLDHGIELPEKRLAAGKNSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred HHHHHHHHHHHHhhccchhhHHhcCCCCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 345689999999862 35888774 344689999999999998764
No 85
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW. This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
Probab=95.17 E-value=0.076 Score=56.11 Aligned_cols=85 Identities=19% Similarity=0.075 Sum_probs=56.4
Q ss_pred ccccCHHHHHHHHHHccccCC-----CCeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCC
Q 000593 19 TVLFDLTRVVEELVFNSVDAG-----ATKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATG 91 (1402)
Q Consensus 19 eVI~sp~svVKELVENSLDAg-----AT~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~g 91 (1402)
+.+.++.-||.|++-||+..| ...|.|.+ ..+...|.|.|+|.|++++.+...+.+..+.+.. +++.
T Consensus 38 ~~~~~l~lav~Ea~~Nai~ha~~~~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~~~~~~~~~~~~--~~~~---- 111 (159)
T TIGR01924 38 DDIEDLKIAVSEACTNAVKHAYKEGENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQSLGPYDGSEPI--DDLR---- 111 (159)
T ss_pred HHHHHHHHHHHHHHHHHHHhccCCCCCCeEEEEEEEeCCEEEEEEEEcccccCchhhccccCCCCCCCCc--ccCC----
Confidence 445667889999999999875 24677765 4556789999999999988777655544333221 1111
Q ss_pred CcccCccchhHHHHhhccc-EEEE
Q 000593 92 IGTFGFRGEALASISDVSL-LEII 114 (1402)
Q Consensus 92 I~T~GFRGEALaSIsaVS~-LeI~ 114 (1402)
-.|.+|+-+.+++. +.+.
T Consensus 112 -----~~G~GL~Li~~L~D~v~~~ 130 (159)
T TIGR01924 112 -----EGGLGLFLIETLMDEVEVY 130 (159)
T ss_pred -----CCccCHHHHHHhccEEEEE
Confidence 13566777777763 5444
No 86
>PRK03660 anti-sigma F factor; Provisional
Probab=95.16 E-value=0.13 Score=52.46 Aligned_cols=56 Identities=25% Similarity=0.256 Sum_probs=39.9
Q ss_pred cccCHHHHHHHHHHccccCCC-----CeEEEEEe--cCeeEEEEEeCCCCCCHHHHHHhhccccC
Q 000593 20 VLFDLTRVVEELVFNSVDAGA-----TKVFVYVG--VCNCYVKVVDDGSGISRDGLVLLGERHAT 77 (1402)
Q Consensus 20 VI~sp~svVKELVENSLDAgA-----T~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~~~rhaT 77 (1402)
.+..+..++.|++.||+..+. ..|.|.+. .+...|+|.|+|.||++ +...+.+..+
T Consensus 36 ~~~~l~~~l~eli~Nai~h~~~~~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~--~~~~~~~~~~ 98 (146)
T PRK03660 36 ELTEIKTAVSEAVTNAIIHGYENNPDGVVYIEVEIEEEELEITVRDEGKGIED--IEEAMQPLYT 98 (146)
T ss_pred HHHhHHHHHHHHHHHHHHHhcCCCCCCEEEEEEEECCCEEEEEEEEccCCCCh--HHHhhCCCcc
Confidence 346678999999999996542 35777664 34567999999999985 4445555443
No 87
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Probab=95.06 E-value=0.031 Score=69.43 Aligned_cols=58 Identities=24% Similarity=0.245 Sum_probs=47.7
Q ss_pred HHHHHHHHHHccccCCCC---------eEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccccCCCCC
Q 000593 24 LTRVVEELVFNSVDAGAT---------KVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERHATSKLG 81 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT---------~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~ 81 (1402)
+.+|+--||.||.+|... .|.++.+. |...+.|.|||.|.+.+++..++++|.|.|-+
T Consensus 601 l~Qvf~NliKNA~EAi~~~~~~e~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r~r~~EPYvTtr~K 669 (712)
T COG5000 601 LGQVFGNLLKNAAEAIEAVEAEERRTALIRVSLDDADGRIVVDVIDNGKGFPRENRHRALEPYVTTREK 669 (712)
T ss_pred HHHHHHHHHHhHHHHhhhcccccCCcceEEEEEecCCCeEEEEEecCCCCCChHHhhhhccCceecccc
Confidence 467888999999998432 47777753 44689999999999999999999999999754
No 88
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Probab=94.97 E-value=0.076 Score=62.75 Aligned_cols=45 Identities=29% Similarity=0.398 Sum_probs=38.0
Q ss_pred cCHHHHHHHHHHccc-cCCCCeEEEEEecCe--eEEEEEeCCCCCCHH
Q 000593 22 FDLTRVVEELVFNSV-DAGATKVFVYVGVCN--CYVKVVDDGSGISRD 66 (1402)
Q Consensus 22 ~sp~svVKELVENSL-DAgAT~I~V~Id~g~--~~I~V~DNG~GIs~e 66 (1402)
.+++.++.|++-|=+ -|.|+.|+|.+..+. ..++|+|||.|+++.
T Consensus 409 vTLyRl~QE~LNNI~KHA~AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 409 VTLYRLCQELLNNICKHADASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred EeHHHHHHHHHHHHHhccccceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 678999999999977 578999999886543 578999999999943
No 89
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Probab=94.70 E-value=0.059 Score=69.03 Aligned_cols=55 Identities=18% Similarity=0.277 Sum_probs=44.6
Q ss_pred HHHHHHHHHHccccCCCCe--EEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCC
Q 000593 24 LTRVVEELVFNSVDAGATK--VFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATS 78 (1402)
Q Consensus 24 p~svVKELVENSLDAgAT~--I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTS 78 (1402)
+.+|+--|||||+.-+... |.|.+ +.+...+.|.|||.|||+++++.+|.++++-
T Consensus 776 ieQVLiNLleNA~Kyap~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~r~ 834 (890)
T COG2205 776 IEQVLINLLENALKYAPPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFYRG 834 (890)
T ss_pred HHHHHHHHHHHHHhhCCCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhhcC
Confidence 3689999999999876443 55544 3455689999999999999999999998776
No 90
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Probab=94.24 E-value=0.076 Score=61.85 Aligned_cols=58 Identities=22% Similarity=0.249 Sum_probs=46.0
Q ss_pred HHHHHHHHHHccccCCC------CeEEEE--------EecC----eeEEEEEeCCCCCCHHHHHHhhccccCCCCC
Q 000593 24 LTRVVEELVFNSVDAGA------TKVFVY--------VGVC----NCYVKVVDDGSGISRDGLVLLGERHATSKLG 81 (1402)
Q Consensus 24 p~svVKELVENSLDAgA------T~I~V~--------Id~g----~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~ 81 (1402)
+.+|+--||.||..|.+ ..|.++ |... ...|.|.|||.||+++=.+.+|.+..|+|-.
T Consensus 242 liQv~LNlVrNAaqA~~~~~~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGVP~~L~~~lF~P~Vs~r~~ 317 (363)
T COG3852 242 LIQVFLNLVRNAAQALGGRADEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGVPPDLQDHLFYPMVSGREG 317 (363)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCCChHHhhhccccccccCCC
Confidence 56899999999999988 344443 3111 2479999999999999999999999998853
No 91
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=94.14 E-value=0.075 Score=62.65 Aligned_cols=74 Identities=20% Similarity=0.284 Sum_probs=56.4
Q ss_pred HHHHHHHHHHccccCC--CCeEEEEEec-C-eeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCCcccCccc
Q 000593 24 LTRVVEELVFNSVDAG--ATKVFVYVGV-C-NCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGIGTFGFRG 99 (1402)
Q Consensus 24 p~svVKELVENSLDAg--AT~I~V~Id~-g-~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI~T~GFRG 99 (1402)
..+|+--+|.||+.-+ ...|+|.+.. + ...|.|.|.|.|||.+|++.+|.||+.-... .+ .+.|-.|
T Consensus 343 ~tQVldNii~NA~KYsP~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdrfyRvdkA-----Rs----R~~gGTG 413 (459)
T COG5002 343 MTQVLDNIISNALKYSPDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDRFYRVDKA-----RS----RKMGGTG 413 (459)
T ss_pred HHHHHHHHHHHHhhcCCCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHHHhhhhhh-----hh----hcCCCCc
Confidence 5789999999999875 5578888854 2 3689999999999999999999998754221 11 4666678
Q ss_pred hhHHHHh
Q 000593 100 EALASIS 106 (1402)
Q Consensus 100 EALaSIs 106 (1402)
.+|+-..
T Consensus 414 LGLaIak 420 (459)
T COG5002 414 LGLAIAK 420 (459)
T ss_pred hhHHHHH
Confidence 8877443
No 92
>PRK11644 sensory histidine kinase UhpB; Provisional
Probab=93.74 E-value=0.071 Score=65.63 Aligned_cols=43 Identities=30% Similarity=0.261 Sum_probs=34.7
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000593 24 LTRVVEELVFNSVDA-GATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 24 p~svVKELVENSLDA-gAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1402)
+..++.|+|.||+.. +++.|.|.+. .+...|+|+|||.||+++
T Consensus 411 L~ril~nlL~NAiKha~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~ 456 (495)
T PRK11644 411 LFRVCQEGLNNIVKHADASAVTLQGWQQDERLMLVIEDDGSGLPPG 456 (495)
T ss_pred HHHHHHHHHHHHHHhCCCCEEEEEEEEcCCEEEEEEEECCCCCCcC
Confidence 556899999999985 4677888774 445789999999999854
No 93
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Probab=93.70 E-value=0.17 Score=50.22 Aligned_cols=78 Identities=22% Similarity=0.198 Sum_probs=52.7
Q ss_pred cccCHHHHHHHHHHccccCCCC-----eEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccccCCCCCCcccccccCCC
Q 000593 20 VLFDLTRVVEELVFNSVDAGAT-----KVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGHLADMDDATGI 92 (1402)
Q Consensus 20 VI~sp~svVKELVENSLDAgAT-----~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~s~eDL~~l~gI 92 (1402)
.+..+.-||.|++-||+..|.. .|.|.+ +.+...|.|.|+|.|+++..+......-.
T Consensus 28 ~~~~~~lav~E~~~Nav~H~~~~~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~~~~~~---------------- 91 (125)
T PF13581_consen 28 DRDDLELAVSEALTNAVEHGYPGDPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQPDPWEP---------------- 91 (125)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCCCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCcccccC----------------
Confidence 3456778999999999988754 677775 45668999999999999875443221100
Q ss_pred cccCccchhHHHHhhcc-cEEE
Q 000593 93 GTFGFRGEALASISDVS-LLEI 113 (1402)
Q Consensus 93 ~T~GFRGEALaSIsaVS-~LeI 113 (1402)
....-.|.+|+-|.+++ ++.+
T Consensus 92 ~~~~~~G~Gl~li~~l~D~~~~ 113 (125)
T PF13581_consen 92 DSLREGGRGLFLIRSLMDEVDY 113 (125)
T ss_pred CCCCCCCcCHHHHHHHHcEEEE
Confidence 01222466678788776 4555
No 94
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Probab=93.29 E-value=0.12 Score=62.51 Aligned_cols=60 Identities=20% Similarity=0.206 Sum_probs=50.7
Q ss_pred cCHHHHHHHHHHccccCCC---CeEEEEEec---CeeEEEEEeCCCCCCHHHHHHhhccccCCCCC
Q 000593 22 FDLTRVVEELVFNSVDAGA---TKVFVYVGV---CNCYVKVVDDGSGISRDGLVLLGERHATSKLG 81 (1402)
Q Consensus 22 ~sp~svVKELVENSLDAgA---T~I~V~Id~---g~~~I~V~DNG~GIs~eDL~~~~~rhaTSKi~ 81 (1402)
.++.+|+-.|+-||+||.. -.|.|.... +...|-|.|||-|-+.+-+++++.+++|||--
T Consensus 563 v~ieQVlvNl~~NaldA~~h~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~dkLl~PFttsK~v 628 (673)
T COG4192 563 VSIEQVLVNLIVNALDASTHFAPWIKLIALGTEQEMLRIAIIDNGQGWPHELVDKLLTPFTTSKEV 628 (673)
T ss_pred hhHHHHHHHHHHHHHhhhccCCceEEEEeecCcccceEEEEecCCCCCchhHHHHhcCCccccccc
Confidence 3678999999999999964 457777643 34689999999999999999999999999863
No 95
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Probab=93.16 E-value=0.1 Score=64.62 Aligned_cols=43 Identities=26% Similarity=0.420 Sum_probs=35.6
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000593 24 LTRVVEELVFNSVDA-GATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 24 p~svVKELVENSLDA-gAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1402)
+..+|.|+|.||+.. +|+.|.|.+. .+...|.|.|||.||+++
T Consensus 470 l~~il~ell~NA~kha~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~ 515 (569)
T PRK10600 470 LLQIAREALSNALKHAQASEVVVTVAQNQNQVKLSVQDNGCGVPEN 515 (569)
T ss_pred HHHHHHHHHHHHHHhCCCCeEEEEEEEcCCEEEEEEEECCCCCCcc
Confidence 568999999999985 5778888874 345789999999999975
No 96
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Probab=92.80 E-value=0.12 Score=63.69 Aligned_cols=43 Identities=30% Similarity=0.416 Sum_probs=37.0
Q ss_pred HHHHHHHHHHccc-cCCCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000593 24 LTRVVEELVFNSV-DAGATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 24 p~svVKELVENSL-DAgAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1402)
+-++|+|-+-|++ -|.|+.|.|.+. .|...+.|+|||+||+..
T Consensus 482 lLqIvREAlsNa~KHa~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 482 LLQIVREALSNAIKHAQASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHHHHHHHHhcccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 4579999999999 478999999983 356899999999999965
No 97
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=92.58 E-value=0.15 Score=59.94 Aligned_cols=45 Identities=33% Similarity=0.415 Sum_probs=38.4
Q ss_pred cCHHHHHHHHHHccc-cCCCCeEEEEEe--cCeeEEEEEeCCCCCCHH
Q 000593 22 FDLTRVVEELVFNSV-DAGATKVFVYVG--VCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 22 ~sp~svVKELVENSL-DAgAT~I~V~Id--~g~~~I~V~DNG~GIs~e 66 (1402)
..+..+|+|.|-|++ -|+|+.|.|.+. .+...++|+|||.|.+.+
T Consensus 278 ~~l~rivQEaltN~~rHa~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~ 325 (365)
T COG4585 278 DALFRIVQEALTNAIRHAQATEVRVTLERTDDELRLEVIDNGVGFDPD 325 (365)
T ss_pred HHHHHHHHHHHHHHHhccCCceEEEEEEEcCCEEEEEEEECCcCCCcc
Confidence 456789999999999 568999999984 455789999999999966
No 98
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Probab=92.30 E-value=0.33 Score=59.26 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=39.4
Q ss_pred ccCHHHHHHHHHHccccCCCC------eEEEEEe--cCeeEEEEEeCCCCCCHHHHHHh
Q 000593 21 LFDLTRVVEELVFNSVDAGAT------KVFVYVG--VCNCYVKVVDDGSGISRDGLVLL 71 (1402)
Q Consensus 21 I~sp~svVKELVENSLDAgAT------~I~V~Id--~g~~~I~V~DNG~GIs~eDL~~~ 71 (1402)
+..|.-++.=|||||+-+|-. .|.|.+. .+...|+|.|||.||+++....+
T Consensus 348 l~~p~l~lqpLvENAi~hgi~~~~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~ 406 (456)
T COG2972 348 LIDPKLVLQPLVENAIEHGIEPKRPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGL 406 (456)
T ss_pred ccCchHHHhHHHHHHHHHhcccCCCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHH
Confidence 467888999999999999843 5666663 34468999999999998765544
No 99
>KOG0355 consensus DNA topoisomerase type II [Chromatin structure and dynamics]
Probab=91.41 E-value=0.37 Score=61.97 Aligned_cols=63 Identities=19% Similarity=0.241 Sum_probs=50.3
Q ss_pred ccccCHHHHHHHHHHcccc----CCCCeEEEEEecCeeEEEEEeCCCCCCHHHHH--------Hhhcc-ccCCCCC
Q 000593 19 TVLFDLTRVVEELVFNSVD----AGATKVFVYVGVCNCYVKVVDDGSGISRDGLV--------LLGER-HATSKLG 81 (1402)
Q Consensus 19 eVI~sp~svVKELVENSLD----AgAT~I~V~Id~g~~~I~V~DNG~GIs~eDL~--------~~~~r-haTSKi~ 81 (1402)
..+..+..+..|.+.||.| ++-..|.|.|+.+...|.|.+||.||+-+..+ .++.. ++.|++.
T Consensus 49 t~~pGl~ki~dEilvNaadk~rd~~m~~i~v~i~~e~~~isv~nnGkGIPv~~H~~ek~yvpelifg~Lltssny~ 124 (842)
T KOG0355|consen 49 TYVPGLYKIFDEILVNAADKQRDPKMNTIKVTIDKEKNEISVYNNGKGIPVTIHKVEKVYVPELIFGNLLTSSNYD 124 (842)
T ss_pred ecCCcHHHHHHHHhhcccccccCCCcceeEEEEccCCCEEEEEeCCCcceeeecccccccchHHHHhhhhhccccC
Confidence 6788899999999999998 45668999999988899999999999977443 34444 4555654
No 100
>PRK13560 hypothetical protein; Provisional
Probab=90.79 E-value=0.25 Score=62.41 Aligned_cols=43 Identities=23% Similarity=0.299 Sum_probs=33.2
Q ss_pred HHHHHHHHHHccccCC-----CCeEEEEEec---CeeEEEEEeCCCCCCHH
Q 000593 24 LTRVVEELVFNSVDAG-----ATKVFVYVGV---CNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 24 p~svVKELVENSLDAg-----AT~I~V~Id~---g~~~I~V~DNG~GIs~e 66 (1402)
...++.+||.||+++. +..|.|.+.. +...|.|.|||.||+++
T Consensus 712 ~~~il~NLl~NAik~~~~~~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~ 762 (807)
T PRK13560 712 CGLIISELLSNALKHAFPDGAAGNIKVEIREQGDGMVNLCVADDGIGLPAG 762 (807)
T ss_pred hHHHHHHHHHHHHHhhccCCCCceEEEEEEEcCCCEEEEEEEeCCCcCCcc
Confidence 3458899999999963 3467777742 34689999999999975
No 101
>KOG0787 consensus Dehydrogenase kinase [Signal transduction mechanisms]
Probab=88.09 E-value=1.3 Score=53.15 Aligned_cols=54 Identities=22% Similarity=0.204 Sum_probs=42.9
Q ss_pred cCHHHHHHHHHHccccCC----------CCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhccc
Q 000593 22 FDLTRVVEELVFNSVDAG----------ATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGERH 75 (1402)
Q Consensus 22 ~sp~svVKELVENSLDAg----------AT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~rh 75 (1402)
.-+..++-||+.||..|- -.-|.|.|-. ....|.|.|-|-||+.++++.++.=.
T Consensus 259 shL~ymlfElfKNamrATve~h~~~~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~drlf~Y~ 324 (414)
T KOG0787|consen 259 SHLYYMLFELFKNAMRATVEHHGDDGDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDIDRLFSYM 324 (414)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhccCCCCCCCeEEEEecCCcceEEEEecCCCCcChhHHHHHHhhh
Confidence 346789999999999982 2347887743 34689999999999999999998653
No 102
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Probab=87.32 E-value=0.69 Score=56.70 Aligned_cols=42 Identities=26% Similarity=0.401 Sum_probs=33.7
Q ss_pred HHHHHHHHHHccccC-CCCeEEEEEe---cCeeEEEEEeCCCCCCH
Q 000593 24 LTRVVEELVFNSVDA-GATKVFVYVG---VCNCYVKVVDDGSGISR 65 (1402)
Q Consensus 24 p~svVKELVENSLDA-gAT~I~V~Id---~g~~~I~V~DNG~GIs~ 65 (1402)
+.+++.+||.||+.. .+..|.|.+. .+...|.|.|||.||++
T Consensus 472 l~qv~~nll~NA~k~~~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~ 517 (565)
T PRK10935 472 LLQIIREATLNAIKHANASEIAVSCVTNPDGEHTVSIRDDGIGIGE 517 (565)
T ss_pred HHHHHHHHHHHHHhcCCCCeEEEEEEEcCCCEEEEEEEECCcCcCC
Confidence 557899999999985 4557888774 34478999999999985
No 103
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Probab=86.72 E-value=2.6 Score=44.56 Aligned_cols=55 Identities=22% Similarity=0.204 Sum_probs=40.6
Q ss_pred ccccCHHHHHHHHHHccccCC-C-----CeEEEEE--ecCeeEEEEEeCCCCCCHHHHHHhhccc
Q 000593 19 TVLFDLTRVVEELVFNSVDAG-A-----TKVFVYV--GVCNCYVKVVDDGSGISRDGLVLLGERH 75 (1402)
Q Consensus 19 eVI~sp~svVKELVENSLDAg-A-----T~I~V~I--d~g~~~I~V~DNG~GIs~eDL~~~~~rh 75 (1402)
+-+..+..||.|++.|++..+ + +.|.|.+ +.+...|.|.|.|.||. ++.....+.
T Consensus 36 ~~~~~l~~av~E~~~N~v~Ha~~~~~~~g~I~i~~~~~~~~~~i~i~D~G~~~~--~~~~~~~~~ 98 (146)
T COG2172 36 VDIADLAIAVSEALTNAVKHAYKLDPSEGEIRIEVSLDDGKLEIRIWDQGPGIE--DLEESLGPG 98 (146)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEEEEEEcCCeEEEEEEeCCCCCC--CHHHhcCCC
Confidence 446678899999999999764 3 4566654 66778999999997766 555555554
No 104
>PRK13559 hypothetical protein; Provisional
Probab=85.01 E-value=1 Score=52.07 Aligned_cols=44 Identities=18% Similarity=0.259 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHccccCCC-----CeEEEEE--e--cCeeEEEEEeCCCCCCHH
Q 000593 23 DLTRVVEELVFNSVDAGA-----TKVFVYV--G--VCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 23 sp~svVKELVENSLDAgA-----T~I~V~I--d--~g~~~I~V~DNG~GIs~e 66 (1402)
.+..++.|||.||+..|+ ..|.|.+ . .+...|.|.|||.|++++
T Consensus 267 ~l~~vl~nLi~NA~k~~~~~~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~ 319 (361)
T PRK13559 267 PLGLVLHELAVNAIKHGALSADQGRISISWKPSPEGAGFRIDWQEQGGPTPPK 319 (361)
T ss_pred HHHHHHHHHHHhHHHhccccCCCcEEEEEEEecCCCCeEEEEEECCCCCCCCC
Confidence 356899999999999864 4788877 3 234689999999997643
No 105
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Probab=81.74 E-value=5.4 Score=50.85 Aligned_cols=50 Identities=20% Similarity=0.226 Sum_probs=40.1
Q ss_pred HHHHHHHHHHccccCC---CCeEEEEEec--CeeEEEEEeCCCCCCHHHHHHhhc
Q 000593 24 LTRVVEELVFNSVDAG---ATKVFVYVGV--CNCYVKVVDDGSGISRDGLVLLGE 73 (1402)
Q Consensus 24 p~svVKELVENSLDAg---AT~I~V~Id~--g~~~I~V~DNG~GIs~eDL~~~~~ 73 (1402)
+.++..-||.||+--+ +..|+|..+. ..+.+.|.|||.||++.-++.+|.
T Consensus 637 l~qv~~NLi~Naik~~~~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF~ 691 (750)
T COG4251 637 LGQVFQNLIANAIKFGGPENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIFV 691 (750)
T ss_pred HHHHHHHHHhhheecCCCCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHHH
Confidence 4567888999999765 4568888753 348999999999999998887654
No 106
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Probab=81.30 E-value=1.5 Score=54.01 Aligned_cols=43 Identities=23% Similarity=0.294 Sum_probs=32.2
Q ss_pred HHHHHHHHHHccccCC--------CCeEEEEEecCeeEEEEEeCCCCCCHH
Q 000593 24 LTRVVEELVFNSVDAG--------ATKVFVYVGVCNCYVKVVDDGSGISRD 66 (1402)
Q Consensus 24 p~svVKELVENSLDAg--------AT~I~V~Id~g~~~I~V~DNG~GIs~e 66 (1402)
|.=++.=|||||+.-| +=.|.|..+.....|.|+|||.||+++
T Consensus 457 P~filQPLVENAIKHG~~~~~~~g~V~I~V~~~d~~l~i~VeDng~li~p~ 507 (557)
T COG3275 457 PSFILQPLVENAIKHGISQLKDTGRVTISVEKEDADLRIEVEDNGGLIQPD 507 (557)
T ss_pred chhhhhHHHHHHHHhcccchhcCCceEEEEEEeCCeEEEEEecCCCCcCCC
Confidence 4456778999999665 334444445666899999999999987
No 107
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=80.84 E-value=1.7 Score=48.83 Aligned_cols=45 Identities=22% Similarity=0.281 Sum_probs=34.9
Q ss_pred cCHHHHHHHHHHccccCCCC-----eEEEEE--ecCe--eEEEEEeCCCCCCHH
Q 000593 22 FDLTRVVEELVFNSVDAGAT-----KVFVYV--GVCN--CYVKVVDDGSGISRD 66 (1402)
Q Consensus 22 ~sp~svVKELVENSLDAgAT-----~I~V~I--d~g~--~~I~V~DNG~GIs~e 66 (1402)
..+.-+|-||+-||+.-|+. .|.|.+ +.++ ..+.|.|||.|++.+
T Consensus 121 ~~Lgliv~EL~tNa~Khaf~~~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~ 174 (221)
T COG3920 121 VPLGLIVHELVTNALKHAFLSRPGGEIRITLSREGDGGRFLLTVWDEGGGPPVE 174 (221)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCC
Confidence 45677899999999987765 566665 3343 689999999999954
No 108
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Probab=72.13 E-value=4.3 Score=48.25 Aligned_cols=47 Identities=34% Similarity=0.348 Sum_probs=37.0
Q ss_pred ccCHHHHHHHHHHcc-ccCCCCeEEEEEec--CeeEEEEEeCCCCCCHHH
Q 000593 21 LFDLTRVVEELVFNS-VDAGATKVFVYVGV--CNCYVKVVDDGSGISRDG 67 (1402)
Q Consensus 21 I~sp~svVKELVENS-LDAgAT~I~V~Id~--g~~~I~V~DNG~GIs~eD 67 (1402)
-+.++.||.|-+-|= --||||+|+|.+.. +...+.|.|||.|.+...
T Consensus 357 ~talyRv~QEaltNIErHa~Atrv~ill~~~~d~vql~vrDnG~GF~~~~ 406 (459)
T COG4564 357 ATALYRVVQEALTNIERHAGATRVTILLQQMGDMVQLMVRDNGVGFSVKE 406 (459)
T ss_pred HHHHHHHHHHHHHHHHhhcCCeEEEEEeccCCcceEEEEecCCCCccchh
Confidence 356678888888774 26799999999953 457899999999999654
No 109
>KOG1979 consensus DNA mismatch repair protein - MLH1 family [Replication, recombination and repair]
Probab=60.53 E-value=61 Score=41.53 Aligned_cols=50 Identities=14% Similarity=0.131 Sum_probs=44.4
Q ss_pred cCcccccCceEeeeecCEEEEEEeCCeEEEEehhhHHHHHHHHHHHHHHh
Q 000593 1158 INKSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL 1207 (1402)
Q Consensus 1158 Isk~~f~~~rVIGQvdkkFIL~e~~dgLyIIDQHAAHERIlyErL~k~~~ 1207 (1402)
.-+++|.+..++|-++..+++++.+..||++|---.-+-..|..+...+.
T Consensus 465 ~l~e~~~n~~yVG~vd~~~alvQh~t~Ly~~d~~~ls~ElfYQi~i~dF~ 514 (694)
T KOG1979|consen 465 VLTEMFRNLSYVGVVDERTALVQHGTSLYLCDTVSLSKELFYQILITDFG 514 (694)
T ss_pred HHHHHHHhcceeeeechhhhhhhcCceEEEechHHHHHHHHHHHHHHHhc
Confidence 34578889999999999999999999999999999888888888887774
No 110
>PF02742 Fe_dep_repr_C: Iron dependent repressor, metal binding and dimerisation domain; InterPro: IPR001367 The diphtheria toxin repressor protein (DTXR) is a member of this group []. In Corynebacterium diphtheriae where it has been studied in some detail this protein acts as an iron-binding repressor of dipheteria toxin gene expression and may serve as a global regulator of gene expression. The N terminus may be involved in iron binding and may associate with the Tox operator. Binding of DTXR to Tox operator requires a divalent metal ion such as cobalt, ferric, manganese and nickel whereas zinc shows weak activation [].; GO: 0003700 sequence-specific DNA binding transcription factor activity, 0005506 iron ion binding, 0006355 regulation of transcription, DNA-dependent; PDB: 2X4H_D 2H09_A 1ON1_B 2HYF_C 2F5E_A 3R60_B 1ON2_B 2F5F_A 2F5D_A 3R61_A ....
Probab=50.69 E-value=9.8 Score=35.40 Aligned_cols=38 Identities=21% Similarity=0.315 Sum_probs=28.7
Q ss_pred HhhccccccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcEE
Q 000593 1316 KACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT 1356 (1402)
Q Consensus 1316 ~ACRsAIK~GD~LS~eEm~~LI~qL~~c~~Pf~CPHGRPTi 1356 (1402)
.|++-|-+.-..|+.+-...|.+-| .+|-.||||.|+.
T Consensus 32 ~a~~~A~~iEH~is~e~~~~l~~~l---~~~~~~P~~~~ip 69 (71)
T PF02742_consen 32 EAEEEACRIEHVISPETIERLCKFL---GFPETCPHGNPIP 69 (71)
T ss_dssp HHHHHHHHHGCCS-HHHHHHHHHHT---TCTSBETTSCBST
T ss_pred HHHHHHHHHHccCCHHHHHHHHHHh---cCCCcCcCCCCCC
Confidence 4555566677889999888887776 5688999999974
No 111
>COG1321 TroR Mn-dependent transcriptional regulator [Transcription]
Probab=34.98 E-value=31 Score=37.08 Aligned_cols=38 Identities=24% Similarity=0.281 Sum_probs=30.3
Q ss_pred HHhhccccccCCCCCHHHHHHHHHHHhcCCCCCCCCCCCcE
Q 000593 1315 SKACRGAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPT 1355 (1402)
Q Consensus 1315 S~ACRsAIK~GD~LS~eEm~~LI~qL~~c~~Pf~CPHGRPT 1355 (1402)
..||+-|-.+-..++.+-+.+|.+-|.. |-.||||+|+
T Consensus 95 ~~~~~ea~~leh~~s~~~~~rl~~~l~~---~~~~p~g~~i 132 (154)
T COG1321 95 EEAHEEAEGLEHALSDETAERLDELLGF---PTRCPHGKPI 132 (154)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhCC---CccCCCCCcc
Confidence 4677777778888999888877766654 8899999998
No 112
>PF14501 HATPase_c_5: GHKL domain
Probab=22.86 E-value=1.3e+02 Score=29.30 Aligned_cols=37 Identities=16% Similarity=0.227 Sum_probs=25.8
Q ss_pred CHHHHHHHHHHccccCC-----CCeEEEEEe--cCeeEEEEEeC
Q 000593 23 DLTRVVEELVFNSVDAG-----ATKVFVYVG--VCNCYVKVVDD 59 (1402)
Q Consensus 23 sp~svVKELVENSLDAg-----AT~I~V~Id--~g~~~I~V~DN 59 (1402)
++..++.-|++||++|. ...|.|.+. .+...|.|.-.
T Consensus 5 dl~~il~nlldNAiea~~~~~~~~~I~i~~~~~~~~~~i~i~N~ 48 (100)
T PF14501_consen 5 DLCRILGNLLDNAIEACKKYEDKRFISISIREENGFLVIIIENS 48 (100)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCCcEEEEEEEecCCEEEEEEEEC
Confidence 56789999999999983 346777774 34455666544
Done!