Query 000593
Match_columns 1402
No_of_seqs 334 out of 2707
Neff 4.4
Searched_HMMs 29240
Date Tue Mar 26 16:20:56 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000593.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_366-369//hhsearch_pdb/000593hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3h4l_A DNA mismatch repair pro 1.0 1 1 537.5 30.6 330 1-354 3-362 (367)
2 3na3_A DNA mismatch repair pro 1.0 1 1 528.9 31.1 337 2-361 7-346 (348)
3 1h7s_A PMS1 protein homolog 2; 1.0 1 1 494.2 29.9 328 1-351 12-364 (365)
4 1b63_A MUTL; DNA mismatch repa 1.0 1 1 477.3 32.3 327 1-351 2-333 (333)
5 3ncv_A DNA mismatch repair pro 1.0 1 1 350.4 20.3 194 1161-1372 25-219 (220)
6 3kdg_A DNA mismatch repair pro 1.0 1 1 349.7 18.9 194 1160-1372 3-196 (197)
7 1x9z_A DNA mismatch repair pro 1.0 1 1 260.0 16.4 178 1161-1369 4-185 (188)
8 1ei1_A DNA gyrase B, GYRB; ATP 1.0 1 1 234.2 21.5 322 2-353 7-363 (391)
9 1s16_A Topoisomerase IV subuni 1.0 1 1 231.0 23.5 322 2-353 8-361 (390)
10 3cwv_A DNA gyrase, B subunit, 1.0 1 1 220.1 25.1 306 12-353 14-347 (369)
No 1
>3h4l_A DNA mismatch repair protein PMS1; ATP binding, DNA repair, DNA damage, nucleus, phosphop DNA binding protein, protein binding; HET: DNA ANP; 2.50A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=537.52 Aligned_cols=330 Identities=27% Similarity=0.403 Sum_probs=295.3
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEEC-CEEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 9986468968999881366404999999999970213899809999935-703999996999999877998430125788
Q 000593 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGV-CNCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 1 M~~IkkLpe~Vi~kIrSgevI~sl~svVkELVeNSLDAgAT~I~I~Id~-g~~~I~V~DNG~GIs~edL~~vg~r~~TSK 79 (1402)
|++|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.+.. +...|+|.|||+||+++++..++.+|+|||
T Consensus 3 M~~I~~L~~~~~~~I~agevi~~~~~vv~eLv~NaiDA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 82 (367)
T 3h4l_A 3 MTQIHQINDIDVHRITSGQVITDLTTAVKELVDNSIDANANQIEIIFKDYGLESIECSDNGDGIDPSNYEFLALKHYTSK 82 (367)
T ss_dssp ----------CTHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEETTTTSEEEEEECSCCCCGGGTTTTTCCEEC--
T ss_pred CCCCEECCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHCCCEECCCCCC
T ss_conf 88402299899987537771028999999999999977998799999939978999998998718557230002455676
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEE-CCEEEEECCCCCCCCCCEEEEECCCCCCH
Q ss_conf 89955556657876567542157877510547999984599864999992-84544411146779986299981544570
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMK-GSKCLYLGIDDERKDVGTTVVSRDLFYNQ 158 (1402)
Q Consensus 80 l~s~~DL~~~~~I~TlGFRGEALaSIs~lS~LtIiSKt~~~~~g~~i~i~-~~~~~~~~~~~~~~~~GTTV~V~dLF~Nl 158 (1402)
+.+++|+.. +.++|||||||+||+++|+|+|+||+.+ ..+|++.++ +|..... .+...++||+|+|+|||+|+
T Consensus 83 ~~~~~Dl~~---i~t~GfrGeaL~Si~avS~l~V~sr~~~-~~~~~~~~~~~G~~~~~--~~~~~~~GTtV~v~~LF~n~ 156 (367)
T 3h4l_A 83 IAKFQDVAK---VQTLGFRGEALSSLCGIAKLSVITTTSP-PKADKLEYDMVGHITSK--TTTSRNKGTTVLVSQLFHNL 156 (367)
T ss_dssp -------CC---CCEEEETTHHHHHHHHSSEEEEEEESST-TCEEEEEECTTCCEEEE--EEECCSSEEEEEEESTTTTC
T ss_pred CCCHHHHHH---HHCCCCCCHHHHHHHCCCEEEEEEEECC-CCEEEEEECCCCCEEEE--CCCCCCCCEEEEECHHHCCC
T ss_conf 774455545---3225866668888642578999999789-77799999289818840--56659997499975453039
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCC---CCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEE--
Q ss_conf 67777730284478978999999998519982999998579---9549993799997899996317222257389851--
Q 000593 159 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMES---EDELLCTCSSSSPLALLISSFGIEDFSFLDEVNA-- 233 (1402)
Q Consensus 159 PVRRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s---~k~ll~t~ssss~ls~I~sIFG~~iassL~~I~~-- 233 (1402)
|+|++.+.++.+.++.+|...+++||++||+|+|+|.+... ...++.+.+..+..+++.++||.....++.+++.
T Consensus 157 P~R~k~flk~~~~e~~~i~~~l~~~Al~~p~v~~~l~~~~~~~~~~~~~~t~~~~~~~~~i~~i~G~~~~~~l~~v~~~~ 236 (367)
T 3h4l_A 157 PVRQKEFSKTFKRQFTKCLTVIQGYAIINAAIKFSVWNITPKGKKNLILSTMRNSSMRKNISSVFGAGGMRGLEEVDLVL 236 (367)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCSSCCHHHHHHHHHCTTTTTTEEEEEEEE
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCCCEEEEECCCCCCHHHHHHHHHCHHHHHCCEEEECCC
T ss_conf 55566641465778999999999998548985999997578886128997799999999999996978773017875413
Q ss_pred ---------------------CCCCEEEEEEEECCCC--CCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCC
Q ss_conf ---------------------3895899999958887--78776437899758223351478999999976016776222
Q 000593 234 ---------------------NDGALEISGYISSPYD--SISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKA 290 (1402)
Q Consensus 234 ---------------------e~~~ikIsGfIS~P~~--~rssKd~QFIFINGRpV~~~~I~KLIneLy~sF~sl~~~~~ 290 (1402)
+...++|+|||++|.. .+.++++||+|||||||..+.+.++|+++|..|.
T Consensus 237 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~G~is~p~~~~~r~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~~------- 309 (367)
T 3h4l_A 237 DLNPFKNRMLGKYTDDPDFLDLDYKIRVKGYISQNSFGCGRNSKDRQFIYVNKRPVEYSTLLKCCNEVYKTFN------- 309 (367)
T ss_dssp ECGGGCCCCC------------CCEEEEEEEEECCSTTCSBSSSSSEEEEETTEEECCHHHHHHHHHHHHTTC-------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCCEECCHHHHHHHHHHHHHCC-------
T ss_conf 5564221111123444333355786799999927854556777874899988979457799999999987448-------
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHC
Q ss_conf 5675547888888994699999838993011346998849709923899999999999985004
Q 000593 291 NNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKI 354 (1402)
Q Consensus 291 ~~~~~~~~r~~~~ryPifVLnI~CPps~vDVNVePsKteV~Fkde~~IL~lIkkaIk~fL~~~~ 354 (1402)
..+||+|+|+|+|||..||||+||+|++|+|++|+.|+.+|+++|.++|.++.
T Consensus 310 -----------~~~~P~~~L~l~~~p~~vDVNVhP~K~eV~f~~e~~i~~~i~~~l~~~~~~~~ 362 (367)
T 3h4l_A 310 -----------NVQFPAVFLNLELPMSLIDVNVTPDKRVILLHNERAVIDIFKTTLSDYYNRQE 362 (367)
T ss_dssp -----------SSCBCCEEEEEECCGGGEECCCSSSTTCCEETTHHHHHHHHHHHHHHHHHHHH
T ss_pred -----------CCCCCEEEEEEECCHHHCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHHHCC
T ss_conf -----------99992899999828277162088987979976879999999999999985447
No 2
>3na3_A DNA mismatch repair protein MLH1; MUTL protein homolog 1, DNA damag repair, structural genomics consortium, SGC, protein bindin; HET: DNA ATP; 2.50A {Homo sapiens}
Probab=1.00 E-value=1 Score=528.93 Aligned_cols=337 Identities=28% Similarity=0.393 Sum_probs=300.7
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCE-EEEEEEECCCCCCHHHHHHHHCCCCCCCC
Q ss_conf 98646896899988136640499999999997021389980999993570-39999969999998779984301257888
Q 000593 2 GTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHATSKL 80 (1402)
Q Consensus 2 ~~IkkLpe~Vi~kIrSgevI~sl~svVkELVeNSLDAgAT~I~I~Id~g~-~~I~V~DNG~GIs~edL~~vg~r~~TSKl 80 (1402)
++|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.++.+. ..|+|.|||+||+++++..++.+|+|||+
T Consensus 7 ~~I~~L~~~~~~~Iaagevi~~~~~vv~eLv~NAidA~a~~I~I~i~~~~~~~I~V~DnG~GI~~~~l~~~~~~~~tsK~ 86 (348)
T 3na3_A 7 GVIRRLDETVVNRIAAGEVIQRPANAIKEMIENCLDAKSTSIQVIVKEGGLKLIQIQDNGTGIRKEDLDIVCERFTTSKL 86 (348)
T ss_dssp CCCCCCCHHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGGGTTTSTTCCSSC
T ss_pred CCCCCCCHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCCCC
T ss_conf 00002998999764256712189999999999999768987999999199789999989967496784344143565556
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCCHHH
Q ss_conf 99555566578765675421578775105479999845998649999928454441114677998629998154457067
Q 000593 81 GHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQPV 160 (1402)
Q Consensus 81 ~s~~DL~~~~~I~TlGFRGEALaSIs~lS~LtIiSKt~~~~~g~~i~i~~~~~~~~~~~~~~~~~GTTV~V~dLF~NlPV 160 (1402)
.+++|+.. +.++|||||||+||+++|+|+|+||+.++..+|++.+.+|.... ...+...++||+|+|+|||+|+|+
T Consensus 87 ~~~~dl~~---i~s~GfrGeaL~Si~avs~l~v~sr~~~~~~~~~~~~~~G~~~~-~~~~~~~~~GTtV~v~~LF~n~P~ 162 (348)
T 3na3_A 87 QSFEDLAS---ISTYGFRGEALASISHVAHVTITTKTADGKCAYRASYSDGKLKA-PPKPCAGNQGTQITVEDLFYNIAT 162 (348)
T ss_dssp CCC------------CCTTCHHHHHHHSSEEEEEEECTTCSSEEEEEEETTEESS-CCEEECCCSEEEEEEESTTTTCHH
T ss_pred CCCHHHHC---CCCCCCCCHHHHHHHCCCEEEEEEEECCCCCEEEEEEECCEEEE-EEEEECCCCCCEEEECCCCCCCCH
T ss_conf 74012210---33478677088874124689999998998736999994998832-245703899709997700033851
Q ss_pred HHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECCC--CE
Q ss_conf 7777302844789789999999985199829999985799549993799997899996317222257389851389--58
Q 000593 161 RRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCSSSSPLALLISSFGIEDFSFLDEVNANDG--AL 238 (1402)
Q Consensus 161 RRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~k~ll~t~ssss~ls~I~sIFG~~iassL~~I~~e~~--~i 238 (1402)
|+++++ +.+.++..|...+++||++||+|+|+|++.++....+.+.+..+..+++.++||...+.++.+++.+.+ .+
T Consensus 163 R~k~lk-~~~~e~~~i~~~l~~~Al~~p~v~f~l~~~g~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~v~~~~~~~~~ 241 (348)
T 3na3_A 163 RRKALK-NPSEEYGKILEVVGRYSVHNAGISFSVKKQGETVADVRTLPNASTVDNIRSIFGNAVSRELIEIGCEDKTLAF 241 (348)
T ss_dssp HHHTSC-CHHHHHHHHHHHHHHHHHHCTTCEEEEEETTCSSCSEECCTTCCHHHHHHHHHCHHHHTTEEEEEEEEGGGTE
T ss_pred HHHHCC-CCHHHHHHHHHHHHHHHHHCCCEEEEEEECCEEEEEEECCCCCCHHHHHHHHHCHHHHHHCEEEEEECCCCCE
T ss_conf 566614-6078999999999999851798699999999887875148997899999999696767520899752687638
Q ss_pred EEEEEEECCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCC
Q ss_conf 99999958887787764378997582233514789999999760167762225675547888888994699999838993
Q 000593 239 EISGYISSPYDSISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCPHSL 318 (1402)
Q Consensus 239 kIsGfIS~P~~~rssKd~QFIFINGRpV~~~~I~KLIneLy~sF~sl~~~~~~~~~~~~~r~~~~ryPifVLnI~CPps~ 318 (1402)
+|+|||+.|... ..+..||+|||||+|.++.+.++|+++|..|. + ..+||+++|+|+|||..
T Consensus 242 ~i~G~is~p~~~-~~~~~q~~fVNgR~v~~~~l~~ai~~~y~~~l---~--------------~~~~P~~~L~l~~~p~~ 303 (348)
T 3na3_A 242 KMNGYISNANYS-VKKCIFLLFINHRLVESTSLRKAIETVYAAYL---P--------------KNTHPFLYLSLEISPQN 303 (348)
T ss_dssp EEEEEEECSSCC-BSSCEEEEEETTEECCCTTHHHHHHHHHHTTS---C--------------TTCBCEEEEEEECC---
T ss_pred EEEEEEECCCCC-CCCCCEEEEECCEEECCHHHHHHHHHHHHHHC---C--------------CCCCEEEEEEEEECHHH
T ss_conf 999999678667-78643899988909638899999999999757---5--------------89960999999928166
Q ss_pred CCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHHHHCCCCCCCH
Q ss_conf 0113469988497099238999999999999850047888740
Q 000593 319 YDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWMKKIAHDSFDV 361 (1402)
Q Consensus 319 vDVNVePsKteV~Fkde~~IL~lIkkaIk~fL~~~~~~~~~s~ 361 (1402)
||||+||+|++|+|.+++.|+.+|+++|.+.|.......+|.+
T Consensus 304 vDVNvhP~K~eV~f~~e~~i~~~i~~~v~~~l~~~~~sr~f~~ 346 (348)
T 3na3_A 304 VDVNVHPTKHEVHFLHEESILERVQQHIESKLLGSNSSRMYFT 346 (348)
T ss_dssp -------------------CTHHHHHHHHHHHC----------
T ss_pred EEEEECCCCCEEEECCHHHHHHHHHHHHHHHHHCCCCCCEEEC
T ss_conf 4020589828899759899999999999999855787554652
No 3
>1h7s_A PMS1 protein homolog 2; DNA repair, GHL ATPase, mismatch repair, HNPCC; 1.95A {Homo sapiens} SCOP: d.14.1.3 d.122.1.2 PDB: 1h7u_A* 1ea6_A*
Probab=1.00 E-value=1 Score=494.22 Aligned_cols=328 Identities=26% Similarity=0.357 Sum_probs=289.6
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECC-EEEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 99864689689998813664049999999999702138998099999357-03999996999999877998430125788
Q 000593 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVC-NCYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 1 M~~IkkLpe~Vi~kIrSgevI~sl~svVkELVeNSLDAgAT~I~I~Id~g-~~~I~V~DNG~GIs~edL~~vg~r~~TSK 79 (1402)
|++|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.+..+ ...|+|.|||+||+.+++..++.+++|||
T Consensus 12 ~~~I~~L~~~~~~~i~agevi~~~~~vl~eLv~NAiDA~a~~I~I~i~~~~~~~I~V~DnG~Gi~~~~l~~~f~~~~tsK 91 (365)
T 1h7s_A 12 AKAIKPIDRKSVHQICSGQVVLSLSTAVKELVENSLDAGATNIDLKLKDYGVDLIEVSDNGCGVEEENFEGLTLKHHTSK 91 (365)
T ss_dssp -----------------CEEECCHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGSGGGGC------
T ss_pred CHHHCCCCHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHHCCCCC
T ss_conf 01002499899987637882442999999999999878998799999959948999997999859899999864111243
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEE-CCEEEEECCCCCCCCCCEEEEECCCCCCH
Q ss_conf 89955556657876567542157877510547999984599864999992-84544411146779986299981544570
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMK-GSKCLYLGIDDERKDVGTTVVSRDLFYNQ 158 (1402)
Q Consensus 80 l~s~~DL~~~~~I~TlGFRGEALaSIs~lS~LtIiSKt~~~~~g~~i~i~-~~~~~~~~~~~~~~~~GTTV~V~dLF~Nl 158 (1402)
+...+|+.. +.++||||+||+|++.+|.|+|+||+.+...+|.+.++ ++.... ..+....+||+|+|++||+|+
T Consensus 92 ~~~~~dl~~---i~s~G~rG~gl~si~~vs~v~v~t~~~~~~~~~~~~~~~~G~~~~--~~~~~~~~GT~V~v~~LF~n~ 166 (365)
T 1h7s_A 92 IQEFADLTQ---VETFGFRGEALSSLCALSDVTISTCHASAKVGTRLMFDHNGKIIQ--KTPYPRPRGTTVSVQQLFSTL 166 (365)
T ss_dssp ----CCTTC---SEEESSSSSHHHHHHHHSEEEEEEECTTCSSCEEEEECTTSCEEE--EEECCCCSEEEEEEESTTTTS
T ss_pred CCCCCCHHC---CCCCCCCCCHHHHHHHHCCEEEEECCCCCCCEEEEEECCCCCEEE--ECCCCCCCCCEEEEEECCCCC
T ss_conf 454321100---125687875356666406089999308985349999968984676--445678998399996343236
Q ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC---CEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEECC
Q ss_conf 677777302844789789999999985199829999985799---54999379999789999631722225738985138
Q 000593 159 PVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE---DELLCTCSSSSPLALLISSFGIEDFSFLDEVNAND 235 (1402)
Q Consensus 159 PVRRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~---k~ll~t~ssss~ls~I~sIFG~~iassL~~I~~e~ 235 (1402)
|+|+|.+.++.+.++.+|+.++++||+.+|+|+|++.+.... ..++.+.+..+..+++.++||......+.++....
T Consensus 167 P~R~k~flk~~~~e~~~i~~~v~~~al~~p~v~f~l~~~~~~~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~l~~i~~~~ 246 (365)
T 1h7s_A 167 PVRHKEFQRNIKKEYAKMVQVLHAYCIISAGIRVSCTNQLGQGKRQPVVCTGGSPSIKENIGSVFGQKQLQSLIPFVQLP 246 (365)
T ss_dssp HHHHHHHHHTHHHHHHHHHHHHHHHHHHCTTCEEEEEEECTTSCEEEEEECCCCSSHHHHHHHHHCHHHHHTEEECCCCC
T ss_pred CHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCEEEEEEECCCCCCEEEEEECCCCCHHHHHHHHHCCHHHHHCEEEEECCC
T ss_conf 31455532216889999998654342128924999975687770789998699735999999860967672137976237
Q ss_pred ------------------CCEEEEEEEECCCCC--CCCCCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf ------------------958999999588877--877643789975822335147899999997601677622256755
Q 000593 236 ------------------GALEISGYISSPYDS--ISVKAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFL 295 (1402)
Q Consensus 236 ------------------~~ikIsGfIS~P~~~--rssKd~QFIFINGRpV~~~~I~KLIneLy~sF~sl~~~~~~~~~~ 295 (1402)
..++|+|||+.|... ++++++||+|||||||..+.+.++|+++|..+. +
T Consensus 247 ~~~~~~~~~~~~~~~~~~~~~~v~G~i~~p~~~~~r~~~~~q~~fvNgR~v~~~~l~~ai~~~y~~~~---~-------- 315 (365)
T 1h7s_A 247 PSDSVCEEYGLSCSDALHNLFYISGFISQCTHGVGRSSTDRQFFFINRRPCDPAKVCRLVNEVYHMYN---R-------- 315 (365)
T ss_dssp CCHHHHHHHTCCTTTTTSCCCEEEEEEECCSTTTSBSSSTTEEEEETTEEECCHHHHHHHHHHHHTTC---T--------
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHC---C--------
T ss_conf 75321221232234456663799999947622345688764699999868148899999999998647---6--------
Q ss_pred CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 47888888994699999838993011346998849709923899999999999985
Q 000593 296 KGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 296 ~~~r~~~~ryPifVLnI~CPps~vDVNVePsKteV~Fkde~~IL~lIkkaIk~fL~ 351 (1402)
.+||+++|+|+|||..||||+||+|++|+|.+|+.|+.+|+.+|.++|.
T Consensus 316 -------~~~P~~~L~l~~~p~~vDvNVhP~K~eV~f~~e~~i~~~i~~~~~~~~~ 364 (365)
T 1h7s_A 316 -------HQYPFVVLNISVDSECVDINVTPDKRQILLQEEKLLLAVLKTSLIGMFD 364 (365)
T ss_dssp -------TCBCCEEEEEECCGGGEEEC------CEEETTHHHHHHHHHHHHHHHHC
T ss_pred -------CCCCEEEEEEEECHHHCCEEECCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf -------6795799999968178332788885889975889999999999999864
No 4
>1b63_A MUTL; DNA mismatch repair, ATPase; HET: ANP; 1.90A {Escherichia coli K12} SCOP: d.14.1.3 d.122.1.2 PDB: 1nhh_A* 1nhi_A* 1bkn_A 1nhj_A* 1b62_A*
Probab=1.00 E-value=1 Score=477.25 Aligned_cols=327 Identities=28% Similarity=0.417 Sum_probs=286.4
Q ss_pred CCCCCCCCHHHHHHHHCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCE-EEEEEEECCCCCCHHHHHHHHCCCCCCC
Q ss_conf 998646896899988136640499999999997021389980999993570-3999996999999877998430125788
Q 000593 1 MGTINRLPEAVRNTVRSGTVLFDLTRVVEELVFNSVDAGATKVFVYVGVCN-CYVKVVDDGSGISRDGLVLLGERHATSK 79 (1402)
Q Consensus 1 M~~IkkLpe~Vi~kIrSgevI~sl~svVkELVeNSLDAgAT~I~I~Id~g~-~~I~V~DNG~GIs~edL~~vg~r~~TSK 79 (1402)
||+|++||++++++|+||++|.++.++|+|||+||+||+|+.|.|.++.+. ..|+|.|||+||+++++..++.+++|||
T Consensus 2 ~m~I~~L~~~~~~~I~agevi~~~~~~v~ELi~NaidA~a~~I~I~i~~~~~~~i~V~DnG~Gi~~~~l~~~~~~~~tsK 81 (333)
T 1b63_A 2 HMPIQVLPPQLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDIERGGAKLIRIRDNGCGIKKDELALALARHATSK 81 (333)
T ss_dssp CSCCCCCCHHHHHHHHHHHHCSSHHHHHHHHHHHHHHTTCSEEEEEEEGGGTSEEEEEECSCCCCGGGHHHHHSTTCCSS
T ss_pred CCCCEECCHHHHHHHHCCCCHHCHHHHHHHHHHHHHHCCCCEEEEEEEECCCEEEEEEECCCCCCHHHHHHHHHCCCCCC
T ss_conf 97135799889988746770447999999999999987998699999909946999998487869799997633335267
Q ss_pred CCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCEEEEEEECCCCCEEEEEEECCEEEEECCCCCCCCCCEEEEECCCCCCHH
Q ss_conf 89955556657876567542157877510547999984599864999992845444111467799862999815445706
Q 000593 80 LGHLADMDDATGIGTFGFRGEALASISDVSLLEIITKAHGRPNGYRKVMKGSKCLYLGIDDERKDVGTTVVSRDLFYNQP 159 (1402)
Q Consensus 80 l~s~~DL~~~~~I~TlGFRGEALaSIs~lS~LtIiSKt~~~~~g~~i~i~~~~~~~~~~~~~~~~~GTTV~V~dLF~NlP 159 (1402)
+.+++|+.. +.++||+|+||+|++.+|+++|+||+.+...+|.+..+++... ....+...++||+|+|.|||+|+|
T Consensus 82 ~~~~~d~~~---~~~~G~~G~gl~si~~vs~l~v~s~~~~~~~~~~~~~~g~~~~-~~~~~~~~~~GT~V~v~~Lf~n~P 157 (333)
T 1b63_A 82 IASLDDLEA---IISLGFRGEALASISSVSRLTLTSRTAEQQEAWQAYAEGRDMN-VTVKPAAHPVGTTLEVLDLFYNTP 157 (333)
T ss_dssp CCSHHHHHT---CCSSCCSSCHHHHHHTTSEEEEEEECTTCSSEEEEEEETTTTE-EEEEEECCCSEEEEEEESTTTTCH
T ss_pred CCCCCHHHH---CCCCCCCCCCHHHHHCCCCEEEEEECCCCCEEEEEEECCCCCE-EEEECCCCCCCCEEEEECCCCCCH
T ss_conf 654331332---2356766534235444773999993189842899999188305-766204689998999933412461
Q ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCCEEEEECC---CCCHHHHHHHHHCCCCCCCCEEEEECCC
Q ss_conf 7777730284478978999999998519982999998579954999379---9997899996317222257389851389
Q 000593 160 VRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESEDELLCTCS---SSSPLALLISSFGIEDFSFLDEVNANDG 236 (1402)
Q Consensus 160 VRRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~k~ll~t~s---sss~ls~I~sIFG~~iassL~~I~~e~~ 236 (1402)
+|+++++ +.+.++..|..++++||+.+|+|+|++.++ ++.++...+ ..+..+++..+||......+.+++.+.+
T Consensus 158 ~r~kflk-~~~~e~~~i~~~~~~~al~~p~v~~~l~~n--g~~~~~~~~~~~~~~~~~~i~~i~G~~~~~~li~i~~~~~ 234 (333)
T 1b63_A 158 ARRKFLR-TEKTEFNHIDEIIRRIALARFDVTINLSHN--GKIVRQYRAVPEGGQKERRLGAICGTAFLEQALAIEWQHG 234 (333)
T ss_dssp HHHHTCC-CHHHHHHHHHHHHHHHHHHCTTCEEEEEET--TEEEEEECCCCTTCCTHHHHHHHHCHHHHHHEEEEEEEET
T ss_pred HHHHHHC-CHHHHHHHHHHHHHHHHCCCCCCEEEEEEC--CEEEEECCCCCCCCHHHHHHHHHHCHHHHHHEEEEEECCC
T ss_conf 6666513-478999999999999850499837999999--9998853788887209999999719563731499970479
Q ss_pred CEEEEEEEECCCCCCCC-CCEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECC
Q ss_conf 58999999588877877-64378997582233514789999999760167762225675547888888994699999838
Q 000593 237 ALEISGYISSPYDSISV-KAFQYVYINSRYVCKGPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACPAYLLNLRCP 315 (1402)
Q Consensus 237 ~ikIsGfIS~P~~~rss-Kd~QFIFINGRpV~~~~I~KLIneLy~sF~sl~~~~~~~~~~~~~r~~~~ryPifVLnI~CP 315 (1402)
.++|+||++.|...+.. ++.||+|||||+|..+.+.++|+++|..+.. ..+||+|+|+|+||
T Consensus 235 ~~~v~G~i~~p~~~~~~~~~~~~~fvNgR~V~~~~l~~ai~~~y~~~l~-----------------~~~~P~~~l~l~~~ 297 (333)
T 1b63_A 235 DLTLRGWVADPNHTTPALAEIQYCYVNGRMMRDRLINHAIRQACEDKLG-----------------ADQQPAFVLYLEID 297 (333)
T ss_dssp TEEEEEEEECGGGCCTTGGGCEEEEETTEECCCHHHHHHHHHHHHHHSS-----------------SCCCCCEEEEEECC
T ss_pred CEEEEEEEECCCCCCCCCCCCEEEEECCEEECCHHHHHHHHHHHHHHCC-----------------CCCCCEEEEEEEEC
T ss_conf 8799999976755667778768999999994678999999999986465-----------------88984899999948
Q ss_pred CCCCCCCCCCCCCEEEECCCHHHHHHHHHHHHHHHH
Q ss_conf 993011346998849709923899999999999985
Q 000593 316 HSLYDLTFDPLKTHVVFKDWEPVLAFIERAIRSAWM 351 (1402)
Q Consensus 316 ps~vDVNVePsKteV~Fkde~~IL~lIkkaIk~fL~ 351 (1402)
|..||||+||+|++|+|.+++.|+.+|+++|.++|.
T Consensus 298 p~~vDvNvhP~K~ev~f~~~~~v~~~i~~~i~~~l~ 333 (333)
T 1b63_A 298 PHQVDVNVHPAKHEVRFHQSRLVHDFIYQGVLSVLQ 333 (333)
T ss_dssp GGGEECTTSTTCCCCEETTHHHHHHHHHHHHHHHTC
T ss_pred CHHCCCEECCCCCEEEECCHHHHHHHHHHHHHHHHC
T ss_conf 033550088884989957889999999999999759
No 5
>3ncv_A DNA mismatch repair protein MUTL; endonuclease, dimer, hydrolase; HET: DNA; 2.40A {Neisseria gonorrhoeae}
Probab=1.00 E-value=1 Score=350.36 Aligned_cols=194 Identities=25% Similarity=0.329 Sum_probs=163.8
Q ss_pred CCCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHH-CCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 23457648656559799998299399994245789987999999981-28885333457640440489799999999999
Q 000593 1161 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVL-SGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQ 1239 (1402)
Q Consensus 1161 ~~l~~mkVIGQvd~kFIL~e~~d~LvLIDQHAAHERIryErL~~~~~-~~~~~sqtlL~p~Q~LllP~~e~~LL~e~~e~ 1239 (1402)
..++.+++|||++++|||++.+++|||||||||||||+||+|++++. .....+|.+|.| ..+.++..+..++.++.+.
T Consensus 25 ~~~p~g~vigQv~~~YIL~e~~~gL~lIDQHAAhERi~yE~l~~~~~~~~~~~sQ~LL~P-~~l~Ls~~e~~~l~~~~~~ 103 (220)
T 3ncv_A 25 ELPPLGFAIAQLLGIYILAQAEDSLLLIDMHAAAERVNYEKMKRQRQENGNLQSQHLLIP-VTFAASHEECAALADHAET 103 (220)
T ss_dssp CCCTTCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHSSCCEEEEEEE-EEEECCHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCEEECCC-EEEECCHHHHHHHHHHHHH
T ss_conf 779873033127698999980897799779999999999999998702588651551789-6997399999999999999
Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99819499881368642232100002455289999560644678884569999999882289999948999999999500
Q 000593 1240 IKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACR 1319 (1402)
Q Consensus 1240 LeklGF~iei~~~g~~sFg~n~~il~~~~~tI~IrsVP~~L~~~~~~~DL~ElL~~L~et~g~~~lp~~i~elLAS~ACR 1319 (1402)
|++|||+++ .||.+ ++.|++||.++........+.++|+.+.+.+.....+..+.++++++|||
T Consensus 104 L~~lGf~ie-------~fg~~---------~v~V~~vP~~l~~~d~~~ll~~ll~~l~~~~~~~~~~~~~~~~~as~ACr 167 (220)
T 3ncv_A 104 LAGFGLELS-------DMGGN---------TLAVRAAPVMLGKSDVVSLARDVLGELAQVGSSQTIASHENRILATMSCH 167 (220)
T ss_dssp HHHTTCEEE-------CCSTT---------EEEEEEEETTSCCSCHHHHHHHHHHHHTTCC-----CTTHHHHHHHHTTC
T ss_pred HHHCCCEEE-------ECCCC---------EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHH
T ss_conf 996898999-------87998---------89999768655777899999999999986488766089999999999877
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 01126999999999999999831899999999994789978858999999996
Q 000593 1320 GAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1372 (1402)
Q Consensus 1320 sAIKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTii~L~dL~eLek~F~kl 1372 (1402)
+|||+|+.|+.+||++||++|++|++||+||||||||++| +..+|+|+|+|.
T Consensus 168 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~P~~CPHGRPt~i~l-s~~eLek~F~R~ 219 (220)
T 3ncv_A 168 GSIRAGRRLTLPEMNALLRDMENTPRSNQCNHGRPTWVKL-TLKELDTLFLRG 219 (220)
T ss_dssp SSSCSSCCCCHHHHHHHHHHHHTSTTTTBCTTSCBSEEEE-EHHHHHHTC---
T ss_pred HHHHCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCEEEEE-CHHHHHHHHCCC
T ss_conf 6433489899999999999998089989698999589996-899999972789
No 6
>3kdg_A DNA mismatch repair protein MUTL; endonuclease, DNA damage, DNA repair, hydrolase; HET: DNA; 2.00A {Bacillus subtilis} PDB: 3gab_A* 3kdk_A*
Probab=1.00 E-value=1 Score=349.67 Aligned_cols=194 Identities=22% Similarity=0.279 Sum_probs=166.2
Q ss_pred CCCCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHH
Q ss_conf 22345764865655979999829939999424578998799999998128885333457640440489799999999999
Q 000593 1160 KSCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQ 1239 (1402)
Q Consensus 1160 K~~l~~mkVIGQvd~kFIL~e~~d~LvLIDQHAAHERIryErL~~~~~~~~~~sqtlL~p~Q~LllP~~e~~LL~e~~e~ 1239 (1402)
++.|+.+++|||++++|||++.+++|||||||||||||+||+|++++......+|.+|.| ..+.++..+..++.++.+.
T Consensus 3 ~~~~~~~~~igQ~~~~yIl~~~~~~L~lIDQHAAhERi~yE~l~~~~~~~~~~sQ~LL~P-~~l~ls~~e~~~l~~~~~~ 81 (197)
T 3kdg_A 3 MDRVPIMYPIGQMHGTYILAQNENGLYIIDQHAAQERIKYEYFREKVGEVEPEVQEMIVP-LTFHYSTNEALIIEQHKQE 81 (197)
T ss_dssp CCCCCCCEEEEEETTTEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHCSSCCEEEEEEE-EEEECCTTHHHHHHHTHHH
T ss_pred CCCCCCCEEEEEECCEEEEEEECCCEEEEEHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC-EEEECCHHHHHHHHHHHHH
T ss_conf 554778768789869999998089889987999999999999999970688775101789-7986299999999999999
Q ss_pred HHHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHC
Q ss_conf 99819499881368642232100002455289999560644678884569999999882289999948999999999500
Q 000593 1240 IKDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACR 1319 (1402)
Q Consensus 1240 LeklGF~iei~~~g~~sFg~n~~il~~~~~tI~IrsVP~~L~~~~~~~DL~ElL~~L~et~g~~~lp~~i~elLAS~ACR 1319 (1402)
|++|||+++ .||.+ ++.|++||.++........+.++|..+.+.+. ...+....++++++|||
T Consensus 82 l~~~Gf~~e-------~~g~~---------~~~v~~vP~~l~~~~~~~~l~ell~~l~~~~~-~~~~~~~~~~~~~~ACr 144 (197)
T 3kdg_A 82 LESVGVFLE-------SFGSN---------SYIVRCHPAWFPKGEEAELIEEIIQQVLDSKN-IDIKKLREEAAIMMSCK 144 (197)
T ss_dssp HHHTTCCCE-------ECSTT---------EEEEEEEETTSCTTCHHHHHHHHHHHHHHHSS-CCHHHHHHHHHHHHHHC
T ss_pred HHHCCCEEE-------ECCCC---------EEEEEECCCCCCCCCHHHHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHH
T ss_conf 996899999-------87998---------89999568323566579999999999986599-88799999999998667
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCCHHHHHHHHHHH
Q ss_conf 01126999999999999999831899999999994789978858999999996
Q 000593 1320 GAIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTTVPLVNLEALHKQIAQL 1372 (1402)
Q Consensus 1320 sAIKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTii~L~dL~eLek~F~kl 1372 (1402)
+|||+|+.|+.+||.+||++|++|++||+||||||||++| +..+|+|+|+|.
T Consensus 145 ~AIk~g~~Ls~~Em~~Ll~~L~~~~~p~~CpHGRPt~~~l-~~~elek~F~R~ 196 (197)
T 3kdg_A 145 GSIKANRHLRNDEIKALLDDLRSTSDPFTCPHGRPIIIHH-STYEMEKMFKRV 196 (197)
T ss_dssp C----CCCCCHHHHHHHHHHHHHSSCTTBCTTSCBCEEEE-EHHHHHHHHCSC
T ss_pred HHCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEEEEE-CHHHHHHHHCCC
T ss_conf 6355899999999999999998089989599999388992-899999971889
No 7
>1x9z_A DNA mismatch repair protein MUTL; alpha-beta fold, dimer, replication, signaling protein; HET: DNA MSE; 2.10A {Escherichia coli} SCOP: d.292.1.1
Probab=1.00 E-value=1 Score=260.02 Aligned_cols=178 Identities=14% Similarity=0.069 Sum_probs=141.4
Q ss_pred CCCCCCEEEEEECCEEEEEEECCEEEEEEHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCEEEECCHHHHHHHHHHHHHH
Q ss_conf 23457648656559799998299399994245789987999999981288853334576404404897999999999999
Q 000593 1161 SCLEDAKVLQQVDKKFIPVVAGGTLAVIDQHAADERIRLEELRHKVLSGEGKSVAYLDAEQELVLPEIGYQLLQNFAEQI 1240 (1402)
Q Consensus 1161 ~~l~~mkVIGQvd~kFIL~e~~d~LvLIDQHAAHERIryErL~~~~~~~~~~sqtlL~p~Q~LllP~~e~~LL~e~~e~L 1240 (1402)
..++.++++||++++|||++.+++||||||||| |||+||+++++ ......+|.+|.| ..+.+++.+..++.++.+.|
T Consensus 4 ~~~~~~~vlgQ~~~~yIl~~~~~~L~lIDQHAA-ERi~yE~l~~~-~~~~~~~Q~LL~P-~~l~ls~~e~~~l~~~~~~l 80 (188)
T 1x9z_A 4 MSQSFGRVLTIVHSDCALLERDGNISLLSLPVA-ERWLRQAQLTP-GEAPVCAQPLLIP-LRLKVSAEEKSALEKAQSAL 80 (188)
T ss_dssp --CCCCEEEEEETTTEEEEEETTEEEEEEHHHH-HHHHHHHHHSB-TTBCCCEEEEEEE-EEEECCHHHHHHHHHHHHHH
T ss_pred CCCCCCEEEEEECCEEEEEEECCCEEEEEHHHH-HHHHHHHHHHH-CCCCCCCCCCCCC-EEEEECHHHHHHHHHHHHHH
T ss_conf 867775562635398999980897799759999-99999999973-3799875547899-79971999999999999999
Q ss_pred HHCCCEEEEECCCCCCCCCCCCCCCCCCEEEEEEEEECCCCCCCCHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCC
Q ss_conf 98194998813686422321000024552899995606446788845699999998822899999489999999995000
Q 000593 1241 KDWGWICNIHTQGSRSFNKNLNLLQRQITVITLLAVPCIFGVNLSDVDLLEFLQQLADTDGSSTTPPSVLRVLNSKACRG 1320 (1402)
Q Consensus 1241 eklGF~iei~~~g~~sFg~n~~il~~~~~tI~IrsVP~~L~~~~~~~DL~ElL~~L~et~g~~~lp~~i~elLAS~ACRs 1320 (1402)
++|||+++. || +. +.|++||.+++.......+.+++..+.+ +.... ..++++++|||+
T Consensus 81 ~~~Gf~~e~-------~g---------~~-~~v~~vP~~l~~~~~~~li~~ll~~l~~--~~~~~---~~~~~~~~AC~~ 138 (188)
T 1x9z_A 81 AELGIDFQS-------DA---------QH-VTIRAVPLPLRQQNLQILIPELIGYLAK--QSVFE---PGNIAQWIARNL 138 (188)
T ss_dssp HHTTCEEEE-------CS---------SE-EEEEEEEGGGTTSCHHHHHHHHHHHHTT--CSSCC---HHHHHHHHHHTT
T ss_pred HHCCCEEEE-------CC---------CC-EEEEECCCHHCCCCHHHHHHHHHHHHHH--CCCCH---HHHHHHHHHHHH
T ss_conf 957929998-------69---------96-9999649001654899999999999983--78626---999999999744
Q ss_pred CCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCEE----EECCCHHHHHHHH
Q ss_conf 112699999999999999983189999999999478----9978858999999
Q 000593 1321 AIMFGDSLLPSECALIVEELKQTSLCFQCAHGRPTT----VPLVNLEALHKQI 1369 (1402)
Q Consensus 1321 AIKfGD~LS~eEm~~LI~qL~~c~~PfqCPHGRPTi----i~L~dL~eLek~F 1369 (1402)
||+|+.|+.+||.+||++|.+| |||||||| +..+++..+-+.+
T Consensus 139 -ik~g~~Ls~~em~~Ll~~L~~~-----CpHGRPt~~~~ll~~id~~~~l~~~ 185 (188)
T 1x9z_A 139 -MSEHAQWSMAQAITLLADVERL-----CPQLVKTPPGGLLQSVDLHPAIKAL 185 (188)
T ss_dssp -SCCCCSCCHHHHHHHHHHHHHH-----CHHHHHSCCTTTEEECCCHHHHHHH
T ss_pred -CCCCCCCCHHHHHHHHHHHHHH-----CCCCCCCCCHHHCEEECHHHHHHHH
T ss_conf -7257989999999999999967-----8799907646546540589999987
No 8
>1ei1_A DNA gyrase B, GYRB; ATPase domain, dimer, isomerase; HET: DNA ANP; 2.30A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=1.00 E-value=1 Score=234.20 Aligned_cols=322 Identities=16% Similarity=0.192 Sum_probs=225.0
Q ss_pred CCCCCCCHHHHHHHHCCCCC------CCHHHHHHHHHHCCCCC---C-CCEEEEEEECCEEEEEEEECCCCCCHHH----
Q ss_conf 98646896899988136640------49999999999702138---9-9809999935703999996999999877----
Q 000593 2 GTINRLPEAVRNTVRSGTVL------FDLTRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG---- 67 (1402)
Q Consensus 2 ~~IkkLpe~Vi~kIrSgevI------~sl~svVkELVeNSLDA---g-AT~I~I~Id~g~~~I~V~DNG~GIs~ed---- 67 (1402)
..|+.|..--.-+.|.|.+| ..+.++|+|||+||+|| | |+.|.|.|+.+. .|+|.|||+||+.++
T Consensus 7 ~~i~~L~gle~vrkRPgmYiGst~~~~gl~~lv~ElvdNsiDea~~g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~ 85 (391)
T 1ei1_A 7 SSIKVLKGLDAVRKRPGMYIGDTDDGTGLHHMVFEVVDNAIDEALAGHCKEIIVTIHADN-SVSVQDDGRGIPTGIHPEE 85 (391)
T ss_dssp GGCEECCTTHHHHHCTHHHHCCSSSSHHHHHHHHHHHHHHHHHHHTTCCCEEEEEECTTS-CEEEEECSSCCCCSBCTTT
T ss_pred HHCEECCHHHHHHCCCCEEECCCCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-EEEEEECCCCCCCCCCCCC
T ss_conf 988787504898719981889788876789999999984998875489988999994798-7999977987054701355
Q ss_pred ----HHHHHC-CCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEEEE-ECCCC
Q ss_conf ----998430-125788899555566578765675421578775105-47999984599864999992845444-11146
Q 000593 68 ----LVLLGE-RHATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-LGIDD 140 (1402)
Q Consensus 68 ----L~~vg~-r~~TSKl~s~~DL~~~~~I~TlGFRGEALaSIs~lS-~LtIiSKt~~~~~g~~i~i~~~~~~~-~~~~~ 140 (1402)
++.++. .|++||+.+ +... .+.||||+||++++.+| .++|+++..+ .+|...+..+.... .....
T Consensus 86 ~~~~~elv~~~lhagsKf~~--~~~~----vSgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~l~~~~ 157 (391)
T 1ei1_A 86 GVSAAEVIMTVLHAGGKFDD--NSYK----VSGGLHGVGVSVVNALSQKLELVIQREG--KIHRQIYEHGVPQAPLAVTG 157 (391)
T ss_dssp SSBHHHHHHHSTTEESCSSS--SSCS----SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEESSCCEEEE
T ss_pred CCCHHHHHHEECCCCCCCCC--CCCC----CCCCCCCCCHHHHHHHCCEEEEEEEECC--CEEEEEECCCCCCCCCEECC
T ss_conf 76448776400135677688--7511----3477566656899983070999999699--68999983896345613415
Q ss_pred CCCCCCEEEEECCCCCCHHHHHHHHHCC-CHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHH
Q ss_conf 7799862999815445706777773028-44789789999999985199829999985799-549993799997899996
Q 000593 141 ERKDVGTTVVSRDLFYNQPVRRKYMQSS-PKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLIS 218 (1402)
Q Consensus 141 ~~~~~GTTV~V~dLF~NlPVRRK~L~ss-~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~-k~ll~t~ssss~ls~I~s 218 (1402)
....+||+|++. |.|++| . + ...++..|.++++++|+++|+|+|+|.+.... +..+...+ .+.+.+..
T Consensus 158 ~~~~~GT~V~f~------Pd~~~F-~-~~~~~e~~~l~~rlr~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~ 227 (391)
T 1ei1_A 158 ETEKTGTMVRFW------PSLETF-T-NVTEFEYEILAKRLRELSFLDSGVSIRLRDKRDGKEDHFHYEG--GIKAFVEY 227 (391)
T ss_dssp ECSCCEEEEEEE------ECTTTC-C-SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTCCEEEECCCS--HHHHHHHH
T ss_pred CCCCCCCEEEEE------ECHHHH-C-CCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCEEEEECCC--HHHHHHHH
T ss_conf 769995289999------880442-7-7310479999999999546689708999817986169998585--49999999
Q ss_pred HHCCC--CCCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCC---------HHHHHHHHHHHHHCCCCC
Q ss_conf 31722--2257389851389589999995888778776437899758223351---------478999999976016776
Q 000593 219 SFGIE--DFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKG---------PIHKLLNHLAASFDCSDS 287 (1402)
Q Consensus 219 IFG~~--iassL~~I~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~~---------~I~KLIneLy~sF~sl~~ 287 (1402)
+.+.. +...++.++.+.+++.++++++.+ ......|+.|||+|+...+ .+.+.+|...... .+..
T Consensus 228 l~~~~~~~~~~~i~~~~~~~~i~veva~~~~---~~~~e~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~-~l~k 303 (391)
T 1ei1_A 228 LNKNKTPIHPNIFYFSTEKDGIGVEVALQWN---DGFQENIYCFTNNIPQRDGGTHLAGFRAAMTRTLNAYMDKE-GYSK 303 (391)
T ss_dssp HHHTSCBSSSCCEEEEEEETTEEEEEEEEEB---SSCCEEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHT-THHH
T ss_pred HCCCCCCCCCCCEEEEEECCCEEEEEEEECC---CCCCEEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCC
T ss_conf 7087766666647999750887999999806---88870399999564169998689999999999999999983-7244
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECC-CHHHHHHHHHHHHHHHHHH
Q ss_conf 22256755478888889946999998389930113469988497099-2389999999999998500
Q 000593 288 WKANNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKD-WEPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 288 ~~~~~~~~~~~r~~~~ryPifVLnI~CPps~vDVNVePsKteV~Fkd-e~~IL~lIkkaIk~fL~~~ 353 (1402)
+. . ..-........-.+||++.+|--.++ ..+|+..--.+ -..|..++.+.+..+|..+
T Consensus 304 -~~-~--~~~~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 363 (391)
T 1ei1_A 304 -KA-K--VSATGDDAREGLIAVVSVKVPDPKFS---SQTKDKLVSSEVKSAVEQQMNELLAEYLLEN 363 (391)
T ss_dssp -HH-C--CCCCHHHHTTTEEEEEEEECSSCCBS---STTCCSBCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred -CC-C--CCCCHHHHHHCCEEEEEEECCCCCCC---CCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf -55-7--76698899615489999766899847---7662201387789999999999999999989
No 9
>1s16_A Topoisomerase IV subunit B; two-domain protein complexed with ADPNP; HET: ANP; 2.10A {Escherichia coli} SCOP: d.14.1.3 d.122.1.2
Probab=1.00 E-value=1 Score=230.96 Aligned_cols=322 Identities=17% Similarity=0.161 Sum_probs=227.2
Q ss_pred CCCCCCCHHHHHHHHCCCCCCCH--HHHHHHHHHCCCCC---C-CCEEEEEEECCEEEEEEEECCCCCCHHH--------
Q ss_conf 98646896899988136640499--99999999702138---9-9809999935703999996999999877--------
Q 000593 2 GTINRLPEAVRNTVRSGTVLFDL--TRVVEELVFNSVDA---G-ATKVFVYVGVCNCYVKVVDDGSGISRDG-------- 67 (1402)
Q Consensus 2 ~~IkkLpe~Vi~kIrSgevI~sl--~svVkELVeNSLDA---g-AT~I~I~Id~g~~~I~V~DNG~GIs~ed-------- 67 (1402)
..|+.|..--.-+.|-|.+|-+. .++|+|||+||||| | |+.|.|.++.+. .|+|.|||+||+.++
T Consensus 8 ~~i~~L~gle~vr~RPgmYiGs~~~~~lv~ElvdNsiD~a~~g~a~~I~V~i~~~g-~I~V~DnG~GIp~~~~~~~~~~~ 86 (390)
T 1s16_A 8 DAIEVLTGLEPVRRRPGMYTDTTRPNHLGQEVIDNSVDEALAGHAKRVDVILHADQ-SLEVIDDGRGMPVDIHPEEGVPA 86 (390)
T ss_dssp GGCEECCTTHHHHHCGGGTSCTTSTHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS-CEEEEECSSCCCCSBCTTTCSBH
T ss_pred HHCEECCHHHHHHHCCCEEECCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEEECCC-EEEEEECCCCCCCCCCCCCCCCH
T ss_conf 77477642578864873066489577889999998998874489988999994598-89999799875734014567640
Q ss_pred HHHHHCC-CCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEEEE-ECC-CCCC-
Q ss_conf 9984301-25788899555566578765675421578775105-47999984599864999992845444-111-4677-
Q 000593 68 LVLLGER-HATSKLGHLADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKCLY-LGI-DDER- 142 (1402)
Q Consensus 68 L~~vg~r-~~TSKl~s~~DL~~~~~I~TlGFRGEALaSIs~lS-~LtIiSKt~~~~~g~~i~i~~~~~~~-~~~-~~~~- 142 (1402)
++.++.+ |++||+.+ +... .+.||+|+||++++++| .++|+++..+ .+|...+..+.... ... ....
T Consensus 87 ~e~v~~~lhagsKf~~--~~~~----~sgGl~GvGls~vnalS~~l~v~~~r~g--~~~~~~~~~G~~~~~~~~~g~~~~ 158 (390)
T 1s16_A 87 VELILCRLHAGGKFSN--KNYQ----FSGGLHGVGISVVNALSKRVEVNVRRDG--QVYNIAFENGEKVQDLQVVGTCGK 158 (390)
T ss_dssp HHHHHHCTTEESCSSS--SSCS----SCSCCSSCHHHHHHHTEEEEEEEEEETT--EEEEEEEETTEEEEEEEEEEECCT
T ss_pred HHHEEEEECCCCCCCC--CCCC----CCCCCCCCCHHHHHHHHCCCEEEEEECC--CEEEEEEECCCCCCCCEECCCCCC
T ss_conf 5423665025677677--7643----4377466426999986263089999799--589999968940246324156667
Q ss_pred CCCCEEEEECCCCCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHHHHC
Q ss_conf 9986299981544570677777302844789789999999985199829999985799-549993799997899996317
Q 000593 143 KDVGTTVVSRDLFYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSFG 221 (1402)
Q Consensus 143 ~~~GTTV~V~dLF~NlPVRRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~-k~ll~t~ssss~ls~I~sIFG 221 (1402)
..+||+|++. |.|++| .+...++..|.++++++|+++|+|+|+|.+.... ...+...+ ++.+.+..+++
T Consensus 159 ~~~GT~V~f~------Pd~~~F--~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~ 228 (390)
T 1s16_A 159 RNTGTSVHFW------PDETFF--DSPRFSVSRLTHVLKAKAVLCPGVEITFKDEINNTEQRWCYQD--GLNDYLAEAVN 228 (390)
T ss_dssp TCCEEEEEEE------ECGGGS--SCCSCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEECCSS--CHHHHHHHHHT
T ss_pred CCCCEEEEEE------ECCCCC--CCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCEEEEEECCC--CHHHHHHHHHC
T ss_conf 9996099999------893001--7642559999999999972489847999807986069998687--39999999837
Q ss_pred CC--CCCCCEEEEECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCCCH---------HHHHHHHHHHHHCCCCCCCC
Q ss_conf 22--22573898513895899999958887787764378997582233514---------78999999976016776222
Q 000593 222 IE--DFSFLDEVNANDGALEISGYISSPYDSISVKAFQYVYINSRYVCKGP---------IHKLLNHLAASFDCSDSWKA 290 (1402)
Q Consensus 222 ~~--iassL~~I~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~~~---------I~KLIneLy~sF~sl~~~~~ 290 (1402)
.. +...++.++.+.+++.++++++.| +......|+.|||+|++..+- +.+.||...... .+.+ +.
T Consensus 229 ~~~~~~~~~i~~~~~~~~~~ve~a~~~~--~~~~~~~~~sFvN~i~t~~GGTH~~gfr~alt~~i~~~~~~~-~~~k-~~ 304 (390)
T 1s16_A 229 GLPTLPEKPFIGNFAGDTEAVDWALLWL--PEGGELLTESYVNLIPTMQGGTHVNGLRQGLLDAMREFCEYR-NILP-RG 304 (390)
T ss_dssp TSCCEEEEEEEEEEECSSEEEEEEEEEC--TTCCCCCEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHHHT-TCSC-TT
T ss_pred CCCCCCCCCEEEEEEECCEEEEEEEEEC--CCCCCCEEEEEECCEECCCCCCHHHHHHHHHHHHHHHHHHHH-CCCC-CC
T ss_conf 8765677748999850887999999714--678873199998888518998889999999999999999982-7675-67
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCEEEECCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 567554788888899469999983899301134699884970992-389999999999998500
Q 000593 291 NNGFLKGKRSKSQACPAYLLNLRCPHSLYDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 291 ~~~~~~~~r~~~~ryPifVLnI~CPps~vDVNVePsKteV~Fkde-~~IL~lIkkaIk~fL~~~ 353 (1402)
..-........-.+||++.+|--.++ ..+|+..--..- ..|..++.+.+..+|..+
T Consensus 305 ----~~l~~~dvregl~avisvki~~P~Fe---gQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 361 (390)
T 1s16_A 305 ----VKLSAEDIWDRCAYVLSVKMQDPQFA---GQTKERLSSRQCAAFVSGVVKDAFILWLNQN 361 (390)
T ss_dssp ----CCCCHHHHHTTEEEEEEEEESSCCBS---STTCCCBCCTHHHHHHHHHHHHHHHHHHHTC
T ss_pred ----CCCCHHHHHHCCEEEEEEECCCCCCC---CCCCCHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf ----76598899611199999655999746---1001000475677788899999999999979
No 10
>3cwv_A DNA gyrase, B subunit, truncated; structural genomics, unknown function, B-subunit binding, isomerase, nucleotide-binding, topoisomerase; HET: DNA; 1.95A {Myxococcus xanthus}
Probab=1.00 E-value=1 Score=220.14 Aligned_cols=306 Identities=10% Similarity=0.037 Sum_probs=214.7
Q ss_pred HHHHHCCCCC-----CCHHHHHHHHHHCCCCC----CCCEEEEEEECCEEEEEEEECCCCCCHHHHHHHHCCCCCCCCCC
Q ss_conf 9988136640-----49999999999702138----99809999935703999996999999877998430125788899
Q 000593 12 RNTVRSGTVL-----FDLTRVVEELVFNSVDA----GATKVFVYVGVCNCYVKVVDDGSGISRDGLVLLGERHATSKLGH 82 (1402)
Q Consensus 12 i~kIrSgevI-----~sl~svVkELVeNSLDA----gAT~I~I~Id~g~~~I~V~DNG~GIs~edL~~vg~r~~TSKl~s 82 (1402)
.-+.|-|-+| ..+.++|+|||+||+|| +|+.|.|.++.++ +|+|.|||+||+. ++ ++.+|+|||+.+
T Consensus 14 ~vrkRPgmYiGs~~~~gl~~~v~ElvdNsiDe~~~g~a~~I~V~i~~~g-~I~V~DnGrGIp~-e~--v~~lhagsKf~~ 89 (369)
T 3cwv_A 14 NVRKRPGMYCGDVGEYGLHHLVYFLLDVAYEEARRGECRDVVLEVGGDG-SIALFCTSRTVTA-EN--LVRVATGAGFLG 89 (369)
T ss_dssp HHHHSTHHHHSCSSHHHHHHHHHHHHHHHHHHHHTTCCSEEEEEECTTS-CEEEEEEESSCCH-HH--HHHHHTTTTGGG
T ss_pred HHHHCCCEEECCCCCCHHHHHHHHHHHHHHHHHHHCCCCEEEEEEECCC-EEEEEECCCCCCH-HH--EEEEECCCCCCC
T ss_conf 9870996587679984188999999964686786489988999994897-8999988977187-67--223205788688
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHCC-CEEEEEEECCCCCEEEEEEECCEE------EE-ECCCCCCCCCCEEEEECCC
Q ss_conf 555566578765675421578775105-479999845998649999928454------44-1114677998629998154
Q 000593 83 LADMDDATGIGTFGFRGEALASISDVS-LLEIITKAHGRPNGYRKVMKGSKC------LY-LGIDDERKDVGTTVVSRDL 154 (1402)
Q Consensus 83 ~~DL~~~~~I~TlGFRGEALaSIs~lS-~LtIiSKt~~~~~g~~i~i~~~~~------~~-~~~~~~~~~~GTTV~V~dL 154 (1402)
.+ +. .+|+++| |+++++++| .++|+|+..+ .+|+..+..+.. .. ........++||+|++.
T Consensus 90 ~~-~~-----~~y~vsG-Gls~vnalSs~l~v~t~r~g--~~~~~~~~~G~~~~~~~~~~~l~~~g~~~~~GT~V~f~-- 158 (369)
T 3cwv_A 90 RP-PG-----DGWGWDS-MLVVSLALSSRYQVDIWADG--RQWRVMGEHGHPQGEGAAVTPMEPMPVSAERGVRVHFV-- 158 (369)
T ss_dssp SS-CC-----CSTTTTS-SHHHHHHTEEEEEEEEEETT--EEEEEEEETTEECTTCEEESSCCCCSSCCSEEEEEEEE--
T ss_pred CC-CC-----CCCCCCC-HHHHHHHHHCEEEEEEEECC--CEEEEEEECCCCCCCCCCCCCCEEECCCCCCCCEEEEE--
T ss_conf 76-66-----4012537-89999996354999999799--78999994893234555667844703458998889999--
Q ss_pred CCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCC-CEEEEECCCCCHHHHHHHHHCCC--CCCCCEEE
Q ss_conf 4570677777302844789789999999985199829999985799-54999379999789999631722--22573898
Q 000593 155 FYNQPVRRKYMQSSPKKVLHSVKKCVLRIALVHPKVSFKFIDMESE-DELLCTCSSSSPLALLISSFGIE--DFSFLDEV 231 (1402)
Q Consensus 155 F~NlPVRRK~L~ss~kkel~~Ik~~I~ryALihP~IsFtL~d~~s~-k~ll~t~ssss~ls~I~sIFG~~--iassL~~I 231 (1402)
|.|++| ++...++..|.++++++|+++|+|+|+|.+.... +..+...+ .+.+.+..++|.. +...+..+
T Consensus 159 ----Pd~~~F--~~~~~e~~~l~~rl~~lA~lnpgv~i~l~d~~~~~~~~f~~~g--Gl~~~v~~l~~~~~~~~~~~i~~ 230 (369)
T 3cwv_A 159 ----PDATIF--EVLAFDRARLSRRCNELAALAPGLRVSFADLQRGERTLWHLPG--GVAQWAHVLTEARPQLHPEPVVF 230 (369)
T ss_dssp ----ECTTTC--SCCCCCHHHHHHHHHHHHHHSTTCEEEEEETTTTEEEEEECTT--HHHHHHHHHHTTSCBSSSSCEEE
T ss_pred ----ECHHHH--CCCCCCHHHHHHHHHHHCCCCCCCEEEEEECCCCEEEEEEECC--HHHHHHHHHHCCCCCCCCCCEEE
T ss_conf ----897883--8754449999999999717689857999947987069999086--19999999836776667774899
Q ss_pred EECCCCEEEEEEEECCCCCCCCCCEEEEEECCCCCCC-----CHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5138958999999588877877643789975822335-----14789999999760167762225675547888888994
Q 000593 232 NANDGALEISGYISSPYDSISVKAFQYVYINSRYVCK-----GPIHKLLNHLAASFDCSDSWKANNGFLKGKRSKSQACP 306 (1402)
Q Consensus 232 ~~e~~~ikIsGfIS~P~~~rssKd~QFIFINGRpV~~-----~~I~KLIneLy~sF~sl~~~~~~~~~~~~~r~~~~ryP 306 (1402)
+.+.+++.++++++.+ ...+..|+.|||+|++.. ..+..+|...+..|.. .... +-........-
T Consensus 231 ~~~~~~i~ve~a~~~~---~~~~~~~~sFVN~i~t~~GGTH~~g~~~al~~a~~~~~k--~~~~-----~l~~~dvregl 300 (369)
T 3cwv_A 231 DFTWDGLRVQCALQWC---EDEDSTLLSFANAVRTVRHGAHVKGVTQALRGALAKLSG--ETRG-----AFPWARVAQGL 300 (369)
T ss_dssp EEEETTEEEEEEEEEB---SSSCCEEEEEETTEECTTCBHHHHHHHHHHHHHHHHHHT--CCGG-----GSCHHHHTTTE
T ss_pred EEECCCEEEEEEEEEC---CCCCEEEEEEECCEEECCCCCHHHHHHHHHHHHHHHHHH--HCCC-----CCCHHHHHHCC
T ss_conf 9743987999999806---888715999987877689987899999999999999985--3478-----75989996202
Q ss_pred EEEEEEECCCCC--CCCCCCCCCCEEEECCC-HHHHHHHHHHHHHHHHHH
Q ss_conf 699999838993--01134699884970992-389999999999998500
Q 000593 307 AYLLNLRCPHSL--YDLTFDPLKTHVVFKDW-EPVLAFIERAIRSAWMKK 353 (1402)
Q Consensus 307 ifVLnI~CPps~--vDVNVePsKteV~Fkde-~~IL~lIkkaIk~fL~~~ 353 (1402)
.+||++.+|--. + -..+|+..--..- ..|..++.+.+..+|..+
T Consensus 301 ~avisvk~~~P~~~F---egQTK~kL~~~e~~~~v~~~v~~~l~~~l~~n 347 (369)
T 3cwv_A 301 TAIVAVSGPRRQMAF---AGPTKELLAIPGLEEAIRKQLQPLFIELLREH 347 (369)
T ss_dssp EEEEEEECCGGGCCB---SSTTCCSBCCTTHHHHHHHHHHHHHHHHHHTC
T ss_pred EEEEEECCCCCCHHC---CCCCCCHHCCHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 999994047960204---66563000487889999999999999999979
Done!