BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000594
(1402 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FCG|A Chain A, Structure Of The Leucine-Rich Repeat Domain Of The Type Iii
Effector Xcv3220 (Xopl)
Length = 328
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/111 (30%), Positives = 53/111 (47%), Gaps = 7/111 (6%)
Query: 1114 TLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCEN 1173
LK L I+N + + LP +EEL + C+ L + F A L+ + +C N
Sbjct: 207 NLKSLKIRNSPLSALGPAIHHLP-KLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSN 265
Query: 1174 LKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLKAP 1224
L +LP + L+ L ++ + GC NL+ LP +L+ L NC L P
Sbjct: 266 LLTLPLDIHRLTQLEKLDLRGCVNLSRLP------SLIAQLPANCIILVPP 310
Score = 36.6 bits (83), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 33/108 (30%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
Query: 582 ITEVPVSIGCLKHLRYLNFSNSWIQCLPEVI--------------TSLFN---------- 617
I +P SI L++L+ L NS + L I T+L N
Sbjct: 195 IRSLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAP 254
Query: 618 LEILILSNCWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKC 665
L+ LIL +C LL LP I L L LD+ G L LP + +L
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPA 302
Score = 32.7 bits (73), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Query: 574 VLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLP 633
L L + + P L HL++ + + LP+ LE L L+ L LP
Sbjct: 85 ALELRSVPLPQFPDQAFRLSHLQHXTIDAAGLXELPDTXQQFAGLETLTLARN-PLRALP 143
Query: 634 SSIGNLVNLHHLDIEGAYQLCELP 657
+SI +L L L I +L ELP
Sbjct: 144 ASIASLNRLRELSIRACPELTELP 167
Score = 32.0 bits (71), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 45/180 (25%), Positives = 67/180 (37%), Gaps = 29/180 (16%)
Query: 1174 LKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVL--IENCDKLKAPLPTGXXX 1231
L++LP +++L+ L +SI C L LPE ++ G + N L+
Sbjct: 139 LRALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLR--------- 189
Query: 1232 XXXXXXXXXCPGIVFFPEEGLS-TNLTSVGISGDNIYKPLVKWG--FHKLTSLRELSIHG 1288
GI P + NL S+ I PL G H L L EL + G
Sbjct: 190 -------LEWTGIRSLPASIANLQNLKSLKIRNS----PLSALGPAIHHLPKLEELDLRG 238
Query: 1289 CSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFP 1348
C+ ++P + G L + + D L L L LE L + C N + P
Sbjct: 239 CTALRNYPPIFGGR---APLKRLILKDCSNLLTLPLD-IHRLTQLEKLDLRGCVNLSRLP 294
>pdb|4B8C|D Chain D, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|J Chain J, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|K Chain K, Nuclease Module Of The Yeast Ccr4-Not Complex
pdb|4B8C|L Chain L, Nuclease Module Of The Yeast Ccr4-Not Complex
Length = 727
Score = 41.6 bits (96), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 46/99 (46%), Gaps = 7/99 (7%)
Query: 568 KCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCW 627
K L L L +TE+P I L +LR L+ S++ + LP + S F L+ +
Sbjct: 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDN- 303
Query: 628 FLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKCL 666
+ LP GNL NL L +EG PL + LK L
Sbjct: 304 MVTTLPWEFGNLCNLQFLGVEGN------PLEKQFLKIL 336
>pdb|3QFL|A Chain A, Coiled-Coil Domain-Dependent Homodimerization Of
Intracellular Mla Immune Receptors Defines A Minimal
Functional Module For Triggering Cell Death
Length = 115
Score = 37.4 bits (85), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 36/62 (58%), Gaps = 2/62 (3%)
Query: 11 QEGVRSKLKKWQKTLKTIEAVLIDAEE--KQLTDRAVKLWLDDLRDLAYDAEDVLDEFAT 68
+GV+ ++ K L++ A LI E ++ D KLW D++R+L+Y EDV+D+F
Sbjct: 21 HKGVKKNIEDLGKELESXNAALIKIGEVPREQLDSQDKLWADEVRELSYVIEDVVDKFLV 80
Query: 69 EA 70
+
Sbjct: 81 QV 82
>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1
Ectodomain
pdb|3RJ0|A Chain A, Plant Steroid Receptor Bri1 Ectodomain In Complex With
Brassinolide
Length = 772
Score = 35.8 bits (81), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 581 LITEVPVSIGCLKHLRYLNFSNSWIQC-LPEVITSLFNLEILILSNCWFLLKLPSSIGNL 639
L E+P + +L +++ SN+ + +P+ I L NL IL LSN F +P+ +G+
Sbjct: 475 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 534
Query: 640 VNLHHLDIEGAYQLCELPLGMKELKCLRTLTNFIVGK 676
+L LD+ +P M + + + NFI GK
Sbjct: 535 RSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGK 570
Score = 33.9 bits (76), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 566 LPKCKKLRVLSLG-RYLITEVPVSIGCLKHLRYLNFSNSWIQCL----PEVITSLFNLEI 620
L C +L L L YL +P S+G L LR L W+ L P+ + + LE
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL---WLNMLEGEIPQELMYVKTLET 467
Query: 621 LILSNCWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKCLRTL 669
LIL ++PS + N NL+ + + E+P + L+ L L
Sbjct: 468 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 516
>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
pdb|3RGZ|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1
Length = 768
Score = 35.8 bits (81), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 29/97 (29%), Positives = 49/97 (50%), Gaps = 2/97 (2%)
Query: 581 LITEVPVSIGCLKHLRYLNFSNSWIQC-LPEVITSLFNLEILILSNCWFLLKLPSSIGNL 639
L E+P + +L +++ SN+ + +P+ I L NL IL LSN F +P+ +G+
Sbjct: 478 LTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDC 537
Query: 640 VNLHHLDIEGAYQLCELPLGMKELKCLRTLTNFIVGK 676
+L LD+ +P M + + + NFI GK
Sbjct: 538 RSLIWLDLNTNLFNGTIPAAMFK-QSGKIAANFIAGK 573
Score = 33.9 bits (76), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 48/109 (44%), Gaps = 8/109 (7%)
Query: 566 LPKCKKLRVLSLG-RYLITEVPVSIGCLKHLRYLNFSNSWIQCL----PEVITSLFNLEI 620
L C +L L L YL +P S+G L LR L W+ L P+ + + LE
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL---WLNMLEGEIPQELMYVKTLET 470
Query: 621 LILSNCWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKCLRTL 669
LIL ++PS + N NL+ + + E+P + L+ L L
Sbjct: 471 LILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAIL 519
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
pdb|2A0U|B Chain B, Crystal Structure Of The Eukaryotic Initiation Factor 2b
From Leishmania Major At 2.1 A Resolution
Length = 383
Score = 32.7 bits (73), Expect = 1.5, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 43/86 (50%), Gaps = 14/86 (16%)
Query: 230 AILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPG 289
A LESI +P L+ L+ +L L E VF DDV + D+W A+K + GAP
Sbjct: 16 ATLESIKYTPGSLRLLDQRKLPL-ETVF--------DDVLTVE-DIWSAIKEXRVRGAPA 65
Query: 290 SRIIVTTRSMDVA-STMGSGKNYELE 314
I + ++ +A +T N EL+
Sbjct: 66 ---IAVSAALGIAVATQRKAANGELK 88
>pdb|3CJI|C Chain C, Structure Of Seneca Valley Virus-001
Length = 284
Score = 30.8 bits (68), Expect = 5.0, Method: Composition-based stats.
Identities = 26/87 (29%), Positives = 39/87 (44%), Gaps = 7/87 (8%)
Query: 774 SSFSKVAVLILRNCQRSTSLPPLGQLCSLKDLTIGGMSALKSIGSEIYGEGCSKPFQSLQ 833
+ F + A+L+ + + + P G+ SL++L + S+ Y G + PFQSL
Sbjct: 124 TQFHQGALLVAMVPETTLDVKPDGKAKSLQELNEEQWVEM----SDDYRTGKNMPFQSLG 179
Query: 834 TLYFEDLQEWEHWEPNRDNDEHVQAFP 860
T Y W W PN N V FP
Sbjct: 180 TYYRP--PNWT-WGPNFINPYQVTVFP 203
>pdb|3RG1|A Chain A, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|E Chain E, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|I Chain I, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|M Chain M, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|B Chain B, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|F Chain F, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|J Chain J, Crystal Structure Of The Rp105MD-1 Complex
pdb|3RG1|N Chain N, Crystal Structure Of The Rp105MD-1 Complex
Length = 612
Score = 30.4 bits (67), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 36/126 (28%), Positives = 55/126 (43%), Gaps = 16/126 (12%)
Query: 538 NLRTFLPISVEERSF-----------YFRHISPMVLSDLLPKCKKLRVLSLGRYLI-TEV 585
NL P+ +E+++F F H+ LRVL+L L+ T
Sbjct: 381 NLSYNEPLGLEDQAFKECPQLELLDVAFTHLHVKAPHSPFQNLHLLRVLNLSHCLLDTSN 440
Query: 586 PVSIGCLKHLRYLNFSNSWIQCLPEVITSLF----NLEILILSNCWFLLKLPSSIGNLVN 641
+ L+ LR+LN + Q T+L +LEILILS+C L + L N
Sbjct: 441 QHLLAGLQDLRHLNLQGNSFQDGSISKTNLLQMVGSLEILILSSCNLLSIDQQAFHGLRN 500
Query: 642 LHHLDI 647
++HLD+
Sbjct: 501 VNHLDL 506
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.410
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,220,373
Number of Sequences: 62578
Number of extensions: 1701288
Number of successful extensions: 3961
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3926
Number of HSP's gapped (non-prelim): 48
length of query: 1402
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1291
effective length of database: 8,027,179
effective search space: 10363088089
effective search space used: 10363088089
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)