Query 000594
Match_columns 1402
No_of_seqs 938 out of 5545
Neff 10.0
Searched_HMMs 46136
Date Mon Apr 1 20:19:38 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000594.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000594hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 5.7E-85 1.2E-89 807.8 47.4 655 6-691 18-692 (889)
2 PLN03210 Resistant to P. syrin 100.0 4.4E-63 9.5E-68 653.7 50.5 478 152-669 182-686 (1153)
3 PF00931 NB-ARC: NB-ARC domain 100.0 8E-42 1.7E-46 388.3 16.8 276 159-442 1-284 (287)
4 PLN00113 leucine-rich repeat r 100.0 7.6E-36 1.6E-40 398.3 25.4 226 1114-1367 381-607 (968)
5 PLN00113 leucine-rich repeat r 100.0 9.1E-35 2E-39 387.9 23.2 466 563-1202 86-564 (968)
6 KOG0472 Leucine-rich repeat pr 99.9 2.4E-27 5.2E-32 249.3 -12.7 284 974-1345 249-541 (565)
7 KOG4194 Membrane glycoprotein 99.9 1.9E-24 4.2E-29 237.7 4.7 350 969-1367 94-452 (873)
8 KOG0472 Leucine-rich repeat pr 99.9 1.8E-25 3.8E-30 235.4 -7.9 232 563-879 61-292 (565)
9 PLN03210 Resistant to P. syrin 99.9 6.1E-22 1.3E-26 263.0 21.7 340 971-1348 552-910 (1153)
10 KOG0618 Serine/threonine phosp 99.9 1.4E-24 2.9E-29 252.7 -4.9 97 572-670 23-120 (1081)
11 KOG4194 Membrane glycoprotein 99.9 4E-23 8.7E-28 227.4 5.9 86 571-657 79-165 (873)
12 KOG0618 Serine/threonine phosp 99.8 3.1E-23 6.8E-28 241.5 -3.9 371 565-1042 40-423 (1081)
13 KOG0444 Cytoskeletal regulator 99.8 4.8E-23 1.1E-27 227.6 -4.2 176 568-811 5-184 (1255)
14 KOG0444 Cytoskeletal regulator 99.8 2.4E-22 5.2E-27 222.1 -5.0 272 975-1346 101-377 (1255)
15 KOG4237 Extracellular matrix p 99.6 3E-17 6.6E-22 173.9 -4.0 116 559-675 80-199 (498)
16 PRK15387 E3 ubiquitin-protein 99.5 6E-14 1.3E-18 171.8 14.8 256 979-1345 203-458 (788)
17 PRK15387 E3 ubiquitin-protein 99.5 3.9E-13 8.4E-18 164.7 14.9 234 1091-1366 223-457 (788)
18 PRK04841 transcriptional regul 99.4 8.2E-11 1.8E-15 157.2 28.6 294 153-490 13-332 (903)
19 PRK15370 E3 ubiquitin-protein 99.3 1.6E-12 3.5E-17 160.8 9.7 243 1092-1366 180-427 (754)
20 KOG4658 Apoptotic ATPase [Sign 99.3 1.5E-12 3.2E-17 163.7 8.6 124 568-692 543-671 (889)
21 PRK15370 E3 ubiquitin-protein 99.3 5.6E-12 1.2E-16 156.1 10.6 245 999-1340 177-424 (754)
22 KOG0617 Ras suppressor protein 99.3 2.5E-13 5.4E-18 127.2 -2.3 113 559-672 45-158 (264)
23 KOG0617 Ras suppressor protein 99.3 2.5E-13 5.4E-18 127.3 -3.6 102 568-670 31-133 (264)
24 PRK00411 cdc6 cell division co 99.2 2.3E-09 4.9E-14 127.8 27.2 302 152-469 28-358 (394)
25 KOG4237 Extracellular matrix p 99.2 6.9E-13 1.5E-17 141.3 -6.6 102 1272-1379 267-370 (498)
26 TIGR03015 pepcterm_ATPase puta 99.1 4.1E-09 8.8E-14 118.5 22.1 183 182-368 44-242 (269)
27 TIGR02928 orc1/cdc6 family rep 99.1 2.2E-08 4.7E-13 118.1 27.9 302 153-469 14-350 (365)
28 PRK00080 ruvB Holliday junctio 99.1 6E-09 1.3E-13 119.6 19.7 280 154-470 25-311 (328)
29 TIGR00635 ruvB Holliday juncti 99.0 8.7E-09 1.9E-13 117.9 20.2 278 154-470 4-290 (305)
30 KOG4341 F-box protein containi 99.0 3.9E-12 8.5E-17 137.0 -8.4 296 1000-1352 138-447 (483)
31 COG2909 MalT ATP-dependent tra 99.0 3.1E-08 6.6E-13 117.8 22.1 292 164-492 25-340 (894)
32 PF01637 Arch_ATPase: Archaeal 99.0 3.7E-09 7.9E-14 116.5 13.3 196 156-363 1-233 (234)
33 KOG4341 F-box protein containi 98.9 6.8E-11 1.5E-15 127.7 -4.7 281 977-1294 138-441 (483)
34 PF05729 NACHT: NACHT domain 98.8 1.4E-08 3.1E-13 104.8 10.6 143 182-331 1-163 (166)
35 cd00116 LRR_RI Leucine-rich re 98.7 1.4E-09 3E-14 126.3 -0.9 86 566-651 19-119 (319)
36 PTZ00112 origin recognition co 98.7 1.6E-06 3.4E-11 104.2 24.3 215 153-368 754-986 (1164)
37 COG3899 Predicted ATPase [Gene 98.7 5.4E-07 1.2E-11 114.8 21.0 309 156-487 2-383 (849)
38 cd00116 LRR_RI Leucine-rich re 98.7 2.3E-09 5E-14 124.4 -0.3 89 574-662 2-103 (319)
39 PRK15386 type III secretion pr 98.7 5.7E-08 1.2E-12 109.2 9.5 155 1089-1264 51-210 (426)
40 PRK15386 type III secretion pr 98.7 7.9E-08 1.7E-12 108.1 10.5 59 1159-1222 50-108 (426)
41 PRK06893 DNA replication initi 98.6 5.5E-07 1.2E-11 97.2 15.1 155 182-368 40-207 (229)
42 KOG0532 Leucine-rich repeat (L 98.6 5E-09 1.1E-13 117.6 -2.2 105 563-670 91-195 (722)
43 PF05496 RuvB_N: Holliday junc 98.6 4.2E-07 9.1E-12 92.9 11.5 183 154-368 24-225 (233)
44 COG2255 RuvB Holliday junction 98.6 7.9E-07 1.7E-11 92.2 13.3 190 154-361 26-220 (332)
45 PF14580 LRR_9: Leucine-rich r 98.5 4.1E-08 8.9E-13 98.7 3.3 81 568-651 17-99 (175)
46 PRK14961 DNA polymerase III su 98.5 3.5E-06 7.6E-11 97.8 19.2 191 154-361 16-217 (363)
47 PRK07003 DNA polymerase III su 98.5 7.5E-06 1.6E-10 98.4 22.0 196 154-366 16-223 (830)
48 PRK14960 DNA polymerase III su 98.5 7.2E-06 1.6E-10 97.6 21.3 193 154-362 15-217 (702)
49 PRK04195 replication factor C 98.5 1.7E-05 3.6E-10 96.1 24.6 248 154-442 14-271 (482)
50 KOG0532 Leucine-rich repeat (L 98.5 7.9E-09 1.7E-13 116.1 -3.9 174 568-789 73-246 (722)
51 COG4886 Leucine-rich repeat (L 98.5 1.2E-07 2.6E-12 113.2 5.5 104 566-671 112-216 (394)
52 PRK13342 recombination factor 98.5 2.2E-06 4.8E-11 101.6 16.0 179 154-366 12-198 (413)
53 PRK14963 DNA polymerase III su 98.5 1E-06 2.2E-11 105.3 12.8 197 154-361 14-214 (504)
54 PF14580 LRR_9: Leucine-rich r 98.4 1.7E-07 3.7E-12 94.3 4.6 106 568-676 40-152 (175)
55 PRK05564 DNA polymerase III su 98.4 7.2E-06 1.6E-10 93.6 18.2 179 154-363 4-189 (313)
56 TIGR02903 spore_lon_C ATP-depe 98.4 4.8E-06 1E-10 102.7 17.6 203 154-367 154-398 (615)
57 COG2256 MGS1 ATPase related to 98.4 1.3E-06 2.9E-11 95.4 11.1 155 179-360 46-208 (436)
58 PF13401 AAA_22: AAA domain; P 98.4 6.6E-07 1.4E-11 87.9 8.1 116 181-298 4-125 (131)
59 PRK12402 replication factor C 98.4 7.9E-06 1.7E-10 95.4 18.5 199 154-363 15-225 (337)
60 PF13173 AAA_14: AAA domain 98.4 1.2E-06 2.7E-11 85.0 9.4 121 182-323 3-127 (128)
61 PRK14949 DNA polymerase III su 98.4 7.1E-06 1.5E-10 100.8 17.7 193 154-363 16-219 (944)
62 PLN03025 replication factor C 98.4 7.7E-06 1.7E-10 93.5 16.3 183 154-361 13-197 (319)
63 KOG3207 Beta-tubulin folding c 98.4 1.5E-07 3.2E-12 103.0 2.0 110 1228-1339 219-334 (505)
64 PF13855 LRR_8: Leucine rich r 98.3 4.6E-07 9.9E-12 74.6 4.2 58 570-627 1-60 (61)
65 TIGR03420 DnaA_homol_Hda DnaA 98.3 5.7E-06 1.2E-10 90.2 14.1 171 159-367 22-204 (226)
66 PRK12323 DNA polymerase III su 98.3 1.2E-05 2.5E-10 95.6 17.2 199 154-363 16-224 (700)
67 PRK14956 DNA polymerase III su 98.3 6.2E-06 1.3E-10 95.6 14.2 195 154-360 18-218 (484)
68 PRK06645 DNA polymerase III su 98.3 2.2E-05 4.7E-10 93.4 19.1 194 154-361 21-226 (507)
69 PF13191 AAA_16: AAA ATPase do 98.3 1.4E-06 3.1E-11 91.7 8.4 48 155-205 1-48 (185)
70 PTZ00202 tuzin; Provisional 98.3 2.3E-05 4.9E-10 87.6 17.6 171 149-330 257-433 (550)
71 PRK14957 DNA polymerase III su 98.3 1.3E-05 2.8E-10 95.8 17.0 185 154-366 16-223 (546)
72 KOG3207 Beta-tubulin folding c 98.3 1.3E-07 2.8E-12 103.4 0.1 61 974-1036 118-183 (505)
73 KOG1259 Nischarin, modulator o 98.3 1.3E-07 2.7E-12 97.7 -0.0 101 566-670 280-380 (490)
74 PRK07471 DNA polymerase III su 98.3 3E-05 6.6E-10 88.9 19.0 196 154-364 19-238 (365)
75 PRK00440 rfc replication facto 98.3 1.7E-05 3.7E-10 91.8 17.2 182 154-362 17-201 (319)
76 COG1474 CDC6 Cdc6-related prot 98.3 3.7E-05 8E-10 88.0 19.4 208 155-364 18-238 (366)
77 PRK14962 DNA polymerase III su 98.3 2.4E-05 5.3E-10 92.8 18.5 187 154-368 14-223 (472)
78 PRK08691 DNA polymerase III su 98.3 1.3E-05 2.8E-10 96.6 16.2 192 154-362 16-218 (709)
79 cd00009 AAA The AAA+ (ATPases 98.3 5.9E-06 1.3E-10 83.4 11.7 125 157-300 1-131 (151)
80 PRK05896 DNA polymerase III su 98.3 2E-05 4.3E-10 94.1 17.1 197 154-366 16-223 (605)
81 PLN03150 hypothetical protein; 98.3 7.1E-07 1.5E-11 111.2 5.3 93 571-663 419-513 (623)
82 PRK14951 DNA polymerase III su 98.3 2.1E-05 4.6E-10 95.3 17.6 196 154-363 16-224 (618)
83 KOG2120 SCF ubiquitin ligase, 98.3 2.5E-08 5.4E-13 103.0 -6.3 132 1113-1244 185-326 (419)
84 PRK07994 DNA polymerase III su 98.2 1.9E-05 4E-10 96.0 16.8 195 154-364 16-220 (647)
85 PRK14964 DNA polymerase III su 98.2 2.8E-05 6E-10 91.6 17.5 181 154-361 13-214 (491)
86 PRK07940 DNA polymerase III su 98.2 3.2E-05 6.9E-10 89.5 17.5 194 154-364 5-213 (394)
87 PF13855 LRR_8: Leucine rich r 98.2 6.9E-07 1.5E-11 73.5 2.9 59 593-651 1-60 (61)
88 cd01128 rho_factor Transcripti 98.2 1.9E-06 4E-11 92.8 6.8 87 182-268 17-112 (249)
89 TIGR00678 holB DNA polymerase 98.2 3.2E-05 6.9E-10 81.2 16.1 92 258-360 95-187 (188)
90 PRK09112 DNA polymerase III su 98.2 3.9E-05 8.5E-10 87.5 17.8 197 153-365 22-241 (351)
91 PRK14958 DNA polymerase III su 98.2 2.6E-05 5.7E-10 93.6 16.8 182 154-362 16-218 (509)
92 TIGR02397 dnaX_nterm DNA polym 98.2 5.4E-05 1.2E-09 89.0 19.2 184 154-365 14-219 (355)
93 KOG1259 Nischarin, modulator o 98.2 4.9E-07 1.1E-11 93.4 1.5 110 559-672 296-407 (490)
94 PRK14955 DNA polymerase III su 98.2 3.2E-05 7E-10 91.0 16.1 197 154-361 16-225 (397)
95 COG3903 Predicted ATPase [Gene 98.2 3.4E-06 7.4E-11 93.2 7.2 270 179-468 12-291 (414)
96 PRK08727 hypothetical protein; 98.1 4.8E-05 1E-09 82.4 15.8 148 182-361 42-201 (233)
97 PRK08084 DNA replication initi 98.1 4.6E-05 9.9E-10 82.6 15.5 154 182-367 46-212 (235)
98 PRK09376 rho transcription ter 98.1 4.8E-06 1E-10 92.8 7.9 99 165-268 158-265 (416)
99 PRK14969 DNA polymerase III su 98.1 5.7E-05 1.2E-09 91.5 17.3 195 154-364 16-221 (527)
100 PRK14959 DNA polymerase III su 98.1 0.00019 4.2E-09 86.4 21.3 198 154-368 16-225 (624)
101 PRK13341 recombination factor 98.1 3.8E-05 8.2E-10 95.6 15.5 173 154-359 28-212 (725)
102 KOG2120 SCF ubiquitin ligase, 98.1 5.1E-08 1.1E-12 100.8 -8.0 180 1137-1341 185-373 (419)
103 PRK07133 DNA polymerase III su 98.1 0.00013 2.8E-09 89.3 18.7 193 154-364 18-220 (725)
104 PLN03150 hypothetical protein; 98.1 3.8E-06 8.3E-11 104.7 5.9 97 561-657 433-532 (623)
105 PRK08903 DnaA regulatory inact 98.0 7.5E-05 1.6E-09 81.1 14.9 153 182-368 43-203 (227)
106 PRK09087 hypothetical protein; 98.0 0.00013 2.8E-09 78.2 16.2 141 182-365 45-196 (226)
107 COG4886 Leucine-rich repeat (L 98.0 2.8E-06 6E-11 101.5 4.0 105 564-670 133-238 (394)
108 PRK09111 DNA polymerase III su 98.0 0.00014 3E-09 88.7 18.1 197 154-364 24-233 (598)
109 PRK14950 DNA polymerase III su 98.0 8.1E-05 1.8E-09 92.0 16.4 196 154-364 16-221 (585)
110 PRK08451 DNA polymerase III su 98.0 0.00022 4.7E-09 85.0 18.8 195 154-364 14-218 (535)
111 PRK14970 DNA polymerase III su 98.0 0.00017 3.7E-09 84.7 18.0 180 154-361 17-206 (367)
112 PRK14952 DNA polymerase III su 98.0 0.00017 3.7E-09 87.3 18.2 198 154-368 13-224 (584)
113 PRK14953 DNA polymerase III su 98.0 0.00029 6.2E-09 84.3 19.5 192 154-365 16-221 (486)
114 PRK07764 DNA polymerase III su 98.0 0.00018 3.9E-09 90.8 18.5 191 154-361 15-218 (824)
115 PRK14954 DNA polymerase III su 98.0 0.00022 4.8E-09 87.1 18.3 196 154-359 16-223 (620)
116 KOG0989 Replication factor C, 97.9 7.8E-05 1.7E-09 78.8 12.0 184 153-358 35-224 (346)
117 PRK05642 DNA replication initi 97.9 0.00019 4.1E-09 77.7 15.4 155 182-368 46-212 (234)
118 TIGR00767 rho transcription te 97.9 3.2E-05 7E-10 87.0 9.5 87 182-268 169-264 (415)
119 PF05621 TniB: Bacterial TniB 97.9 0.00032 6.9E-09 75.9 16.2 194 162-359 45-256 (302)
120 PRK14948 DNA polymerase III su 97.9 0.00036 7.8E-09 85.9 18.8 197 154-364 16-222 (620)
121 PF00308 Bac_DnaA: Bacterial d 97.9 0.00035 7.5E-09 74.7 16.5 184 154-364 9-208 (219)
122 PRK06305 DNA polymerase III su 97.9 0.00034 7.4E-09 83.1 18.0 185 154-364 17-223 (451)
123 KOG2543 Origin recognition com 97.9 0.00055 1.2E-08 74.7 17.6 169 153-330 5-192 (438)
124 PF14516 AAA_35: AAA-like doma 97.9 0.0021 4.5E-08 73.7 23.4 204 152-371 9-246 (331)
125 PF12799 LRR_4: Leucine Rich r 97.9 9.9E-06 2.1E-10 60.6 2.9 33 594-626 2-34 (44)
126 KOG2227 Pre-initiation complex 97.9 0.0003 6.5E-09 78.8 15.4 225 152-380 148-386 (529)
127 KOG2028 ATPase related to the 97.9 0.00023 4.9E-09 76.4 13.8 158 179-359 160-331 (554)
128 TIGR01242 26Sp45 26S proteasom 97.8 0.00022 4.8E-09 83.3 14.8 182 153-358 121-328 (364)
129 PRK06647 DNA polymerase III su 97.8 0.00065 1.4E-08 82.6 18.7 193 154-363 16-219 (563)
130 KOG0531 Protein phosphatase 1, 97.8 3.9E-06 8.4E-11 100.1 -0.5 103 565-671 90-193 (414)
131 KOG0531 Protein phosphatase 1, 97.8 5E-06 1.1E-10 99.2 -0.6 102 567-672 69-170 (414)
132 PF12799 LRR_4: Leucine Rich r 97.8 2.4E-05 5.2E-10 58.5 3.2 40 570-609 1-40 (44)
133 PRK14965 DNA polymerase III su 97.7 0.00066 1.4E-08 83.5 17.4 196 154-365 16-222 (576)
134 KOG1909 Ran GTPase-activating 97.7 1.2E-05 2.6E-10 86.1 1.9 88 564-651 24-131 (382)
135 PRK05563 DNA polymerase III su 97.7 0.0011 2.5E-08 81.0 19.3 192 154-361 16-217 (559)
136 PRK06620 hypothetical protein; 97.7 0.00087 1.9E-08 71.2 15.9 136 182-362 45-187 (214)
137 CHL00181 cbbX CbbX; Provisiona 97.7 0.0011 2.4E-08 73.7 17.4 135 182-332 60-210 (287)
138 PRK14971 DNA polymerase III su 97.7 0.00097 2.1E-08 82.2 18.3 193 154-361 17-219 (614)
139 PHA02544 44 clamp loader, smal 97.7 0.00028 6E-09 81.3 12.9 149 154-329 21-171 (316)
140 PRK14087 dnaA chromosomal repl 97.7 0.00081 1.7E-08 80.0 16.9 167 182-366 142-321 (450)
141 TIGR02639 ClpA ATP-dependent C 97.7 0.00046 9.9E-09 88.1 15.2 157 154-331 182-358 (731)
142 TIGR02881 spore_V_K stage V sp 97.7 0.00074 1.6E-08 74.9 14.7 162 155-332 7-192 (261)
143 TIGR03345 VI_ClpV1 type VI sec 97.6 0.0006 1.3E-08 87.5 15.7 157 154-331 187-363 (852)
144 PRK05707 DNA polymerase III su 97.6 0.00085 1.9E-08 76.0 15.2 169 180-364 21-203 (328)
145 PRK11331 5-methylcytosine-spec 97.6 0.00016 3.6E-09 82.9 8.9 109 154-274 175-287 (459)
146 CHL00095 clpC Clp protease ATP 97.6 0.0004 8.6E-09 89.8 13.4 157 154-330 179-353 (821)
147 TIGR00362 DnaA chromosomal rep 97.6 0.0017 3.7E-08 77.2 17.9 159 182-362 137-308 (405)
148 TIGR02880 cbbX_cfxQ probable R 97.6 0.0015 3.3E-08 72.8 16.2 133 183-331 60-208 (284)
149 PRK14088 dnaA chromosomal repl 97.6 0.0022 4.8E-08 76.3 18.0 158 183-361 132-302 (440)
150 PRK07399 DNA polymerase III su 97.6 0.0016 3.4E-08 73.5 15.6 197 154-364 4-221 (314)
151 KOG1909 Ran GTPase-activating 97.5 1.7E-05 3.7E-10 85.0 -0.9 87 588-675 25-131 (382)
152 PRK03992 proteasome-activating 97.5 0.00069 1.5E-08 79.4 12.1 180 154-357 131-336 (389)
153 KOG4579 Leucine-rich repeat (L 97.5 1.1E-05 2.4E-10 74.1 -2.1 89 567-657 50-139 (177)
154 PF05673 DUF815: Protein of un 97.5 0.0018 4E-08 67.8 13.7 107 152-284 25-132 (249)
155 PRK11034 clpA ATP-dependent Cl 97.5 0.0015 3.2E-08 82.2 15.0 158 154-331 186-362 (758)
156 TIGR00602 rad24 checkpoint pro 97.4 0.00099 2.1E-08 81.3 13.0 51 153-204 83-133 (637)
157 KOG4579 Leucine-rich repeat (L 97.4 4.2E-05 9.2E-10 70.4 0.6 99 571-671 28-130 (177)
158 PRK12422 chromosomal replicati 97.4 0.0063 1.4E-07 72.2 18.9 153 182-357 142-306 (445)
159 KOG1947 Leucine rich repeat pr 97.4 1.2E-05 2.5E-10 99.7 -4.9 84 1274-1371 357-444 (482)
160 PRK00149 dnaA chromosomal repl 97.4 0.0039 8.4E-08 75.2 16.8 158 182-362 149-320 (450)
161 PRK08058 DNA polymerase III su 97.4 0.0036 7.8E-08 71.6 15.7 162 155-329 6-180 (329)
162 COG3267 ExeA Type II secretory 97.4 0.0085 1.8E-07 62.5 16.4 183 181-367 51-248 (269)
163 PRK08769 DNA polymerase III su 97.3 0.0079 1.7E-07 67.5 17.1 186 162-365 12-209 (319)
164 PRK10536 hypothetical protein; 97.3 0.0036 7.9E-08 66.5 13.4 133 155-299 56-213 (262)
165 TIGR03346 chaperone_ClpB ATP-d 97.2 0.0035 7.5E-08 81.4 15.5 158 154-331 173-349 (852)
166 PF13177 DNA_pol3_delta2: DNA 97.2 0.0041 9E-08 62.9 12.7 121 158-300 1-143 (162)
167 TIGR03689 pup_AAA proteasome A 97.2 0.0045 9.7E-08 73.6 14.8 168 154-331 182-378 (512)
168 KOG1859 Leucine-rich repeat pr 97.2 2.7E-05 5.8E-10 90.7 -4.1 86 562-651 179-265 (1096)
169 PF00004 AAA: ATPase family as 97.2 0.00098 2.1E-08 65.4 7.2 21 184-204 1-21 (132)
170 PRK06871 DNA polymerase III su 97.1 0.018 3.8E-07 64.9 17.5 180 162-361 10-200 (325)
171 PRK14086 dnaA chromosomal repl 97.1 0.015 3.3E-07 70.2 17.8 157 183-361 316-485 (617)
172 PRK08116 hypothetical protein; 97.1 0.0017 3.7E-08 71.6 9.2 103 182-298 115-220 (268)
173 smart00382 AAA ATPases associa 97.1 0.0022 4.8E-08 63.9 9.6 87 182-271 3-90 (148)
174 PRK06090 DNA polymerase III su 97.1 0.017 3.7E-07 64.8 17.1 176 162-364 11-201 (319)
175 CHL00176 ftsH cell division pr 97.1 0.0061 1.3E-07 75.3 14.5 179 154-356 183-386 (638)
176 KOG2982 Uncharacterized conser 97.1 0.00026 5.7E-09 74.0 2.2 84 568-651 69-157 (418)
177 COG5238 RNA1 Ran GTPase-activa 97.1 0.0002 4.4E-09 73.8 1.4 90 566-656 26-135 (388)
178 KOG3665 ZYG-1-like serine/thre 97.1 0.00041 8.9E-09 86.1 4.3 108 534-651 145-261 (699)
179 PRK10865 protein disaggregatio 97.1 0.0053 1.2E-07 79.3 14.4 46 154-205 178-223 (857)
180 PTZ00361 26 proteosome regulat 97.0 0.0032 7E-08 73.7 10.8 160 154-332 183-368 (438)
181 COG0593 DnaA ATPase involved i 97.0 0.0083 1.8E-07 68.6 13.6 159 153-334 87-260 (408)
182 COG0542 clpA ATP-binding subun 97.0 0.019 4.1E-07 70.7 17.1 126 153-285 490-619 (786)
183 TIGR00763 lon ATP-dependent pr 97.0 0.014 3E-07 75.2 16.9 52 153-204 319-370 (775)
184 KOG1947 Leucine rich repeat pr 97.0 4.9E-05 1.1E-09 94.1 -5.3 63 1307-1370 352-417 (482)
185 PRK12608 transcription termina 97.0 0.0048 1E-07 69.5 10.9 102 162-268 119-229 (380)
186 COG1373 Predicted ATPase (AAA+ 96.9 0.0079 1.7E-07 70.5 13.2 121 183-327 39-163 (398)
187 COG1223 Predicted ATPase (AAA+ 96.9 0.006 1.3E-07 62.9 10.1 179 154-357 121-318 (368)
188 PF04665 Pox_A32: Poxvirus A32 96.9 0.0061 1.3E-07 64.7 10.5 35 183-218 15-49 (241)
189 PRK08118 topology modulation p 96.9 0.00056 1.2E-08 69.6 2.5 33 183-215 3-37 (167)
190 KOG1859 Leucine-rich repeat pr 96.9 0.00016 3.5E-09 84.5 -1.6 84 565-651 204-290 (1096)
191 PTZ00454 26S protease regulato 96.9 0.013 2.8E-07 68.4 13.9 159 154-331 145-329 (398)
192 PRK07993 DNA polymerase III su 96.8 0.037 7.9E-07 63.1 17.1 182 162-362 10-202 (334)
193 TIGR02639 ClpA ATP-dependent C 96.8 0.032 6.9E-07 71.6 18.4 121 153-285 453-579 (731)
194 PRK06964 DNA polymerase III su 96.8 0.024 5.3E-07 64.3 15.2 94 258-364 131-225 (342)
195 KOG2982 Uncharacterized conser 96.8 0.00035 7.5E-09 73.1 0.5 186 1110-1297 68-267 (418)
196 KOG3665 ZYG-1-like serine/thre 96.8 0.00079 1.7E-08 83.7 3.5 31 638-670 171-201 (699)
197 PRK06526 transposase; Provisio 96.8 0.002 4.4E-08 70.1 6.2 99 182-298 99-200 (254)
198 PRK04132 replication factor C 96.8 0.14 3.1E-06 64.7 22.9 156 189-364 574-731 (846)
199 PRK08939 primosomal protein Dn 96.7 0.0058 1.3E-07 68.6 9.5 122 158-298 135-260 (306)
200 COG2812 DnaX DNA polymerase II 96.7 0.0045 9.7E-08 73.0 8.6 189 154-358 16-214 (515)
201 PRK07261 topology modulation p 96.7 0.0039 8.5E-08 63.8 7.2 65 183-270 2-68 (171)
202 TIGR01241 FtsH_fam ATP-depende 96.7 0.034 7.4E-07 68.0 16.4 180 154-357 55-259 (495)
203 PRK13531 regulatory ATPase Rav 96.7 0.0078 1.7E-07 70.1 9.9 42 155-204 21-62 (498)
204 PF01695 IstB_IS21: IstB-like 96.6 0.0021 4.6E-08 66.0 4.7 99 182-298 48-149 (178)
205 TIGR03346 chaperone_ClpB ATP-d 96.6 0.011 2.3E-07 77.0 12.2 138 153-298 564-717 (852)
206 PRK08699 DNA polymerase III su 96.6 0.016 3.4E-07 65.8 12.0 72 258-330 112-184 (325)
207 KOG0991 Replication factor C, 96.6 0.053 1.1E-06 55.2 13.9 48 154-207 27-74 (333)
208 PF10443 RNA12: RNA12 protein; 96.6 0.16 3.4E-06 58.1 19.3 209 159-382 1-297 (431)
209 PRK08181 transposase; Validate 96.6 0.0079 1.7E-07 65.9 8.9 99 183-298 108-208 (269)
210 PRK06921 hypothetical protein; 96.6 0.0063 1.4E-07 67.0 8.0 37 182-218 118-154 (266)
211 TIGR03345 VI_ClpV1 type VI sec 96.5 0.0092 2E-07 76.9 10.7 138 153-298 565-718 (852)
212 smart00763 AAA_PrkA PrkA AAA d 96.5 0.0026 5.6E-08 71.4 4.8 52 154-205 51-102 (361)
213 PF02562 PhoH: PhoH-like prote 96.5 0.0075 1.6E-07 62.5 7.8 130 158-299 4-156 (205)
214 PRK07952 DNA replication prote 96.5 0.01 2.3E-07 63.9 9.2 102 182-298 100-204 (244)
215 KOG0741 AAA+-type ATPase [Post 96.5 0.045 9.8E-07 62.5 14.2 150 179-354 536-704 (744)
216 PRK09183 transposase/IS protei 96.5 0.0054 1.2E-07 67.4 6.9 100 182-298 103-205 (259)
217 COG0470 HolB ATPase involved i 96.5 0.027 5.9E-07 65.3 13.3 124 155-298 2-148 (325)
218 PRK10865 protein disaggregatio 96.5 0.013 2.9E-07 75.7 11.4 125 153-284 567-695 (857)
219 TIGR02640 gas_vesic_GvpN gas v 96.4 0.096 2.1E-06 58.0 16.4 55 161-227 9-63 (262)
220 TIGR02902 spore_lonB ATP-depen 96.4 0.019 4.2E-07 70.1 11.7 45 154-204 65-109 (531)
221 TIGR02237 recomb_radB DNA repa 96.4 0.011 2.3E-07 63.4 8.4 49 179-229 10-58 (209)
222 CHL00095 clpC Clp protease ATP 96.4 0.017 3.7E-07 74.9 11.6 137 153-298 508-661 (821)
223 PRK11889 flhF flagellar biosyn 96.3 0.036 7.8E-07 62.7 12.2 90 179-270 239-331 (436)
224 PRK09361 radB DNA repair and r 96.3 0.016 3.6E-07 62.7 9.4 47 179-227 21-67 (225)
225 PRK12377 putative replication 96.3 0.013 2.7E-07 63.4 8.2 101 182-298 102-205 (248)
226 PRK10787 DNA-binding ATP-depen 96.2 0.011 2.4E-07 75.1 8.7 52 153-204 321-372 (784)
227 PRK05541 adenylylsulfate kinas 96.2 0.014 3.1E-07 60.4 7.9 36 180-216 6-41 (176)
228 PRK04296 thymidine kinase; Pro 96.2 0.0092 2E-07 62.3 6.4 113 182-300 3-117 (190)
229 KOG1644 U2-associated snRNP A' 96.2 0.0044 9.4E-08 61.8 3.5 100 570-672 42-148 (233)
230 cd00561 CobA_CobO_BtuR ATP:cor 96.1 0.014 3.1E-07 57.8 7.1 117 183-300 4-139 (159)
231 PF00448 SRP54: SRP54-type pro 96.1 0.02 4.4E-07 59.7 8.3 87 181-268 1-92 (196)
232 COG0466 Lon ATP-dependent Lon 96.1 0.0051 1.1E-07 73.1 4.1 107 152-269 321-427 (782)
233 TIGR01243 CDC48 AAA family ATP 96.0 0.047 1E-06 70.3 12.9 182 154-359 178-382 (733)
234 COG1484 DnaC DNA replication p 96.0 0.021 4.7E-07 62.3 8.2 80 182-277 106-185 (254)
235 cd01394 radB RadB. The archaea 96.0 0.03 6.6E-07 60.3 9.4 44 179-223 17-60 (218)
236 KOG2228 Origin recognition com 95.9 0.073 1.6E-06 57.7 11.6 170 155-331 25-219 (408)
237 PLN00020 ribulose bisphosphate 95.9 0.1 2.3E-06 58.2 13.0 26 179-204 146-171 (413)
238 COG0542 clpA ATP-binding subun 95.9 0.023 4.9E-07 70.1 8.8 157 154-331 170-346 (786)
239 PF00560 LRR_1: Leucine Rich R 95.9 0.0035 7.5E-08 38.8 1.0 20 595-614 2-21 (22)
240 PF08423 Rad51: Rad51; InterP 95.9 0.021 4.6E-07 62.5 7.9 86 182-268 39-142 (256)
241 PRK11034 clpA ATP-dependent Cl 95.9 0.032 7E-07 70.4 10.4 121 154-284 458-582 (758)
242 PRK06696 uridine kinase; Valid 95.9 0.01 2.2E-07 64.1 5.3 44 158-204 2-45 (223)
243 cd01393 recA_like RecA is a b 95.9 0.044 9.5E-07 59.6 10.3 90 179-269 17-124 (226)
244 KOG1969 DNA replication checkp 95.9 0.027 5.9E-07 67.1 8.8 82 179-279 324-407 (877)
245 cd01123 Rad51_DMC1_radA Rad51_ 95.9 0.041 9E-07 60.2 10.1 89 179-268 17-124 (235)
246 COG1222 RPT1 ATP-dependent 26S 95.9 0.2 4.4E-06 55.1 14.6 190 155-369 152-372 (406)
247 KOG1514 Origin recognition com 95.9 0.4 8.7E-06 57.5 18.2 204 154-367 396-624 (767)
248 PF07728 AAA_5: AAA domain (dy 95.9 0.0049 1.1E-07 61.0 2.4 87 184-283 2-89 (139)
249 PF13207 AAA_17: AAA domain; P 95.9 0.0058 1.3E-07 58.8 2.9 22 183-204 1-22 (121)
250 KOG2035 Replication factor C, 95.8 0.057 1.2E-06 56.7 10.1 205 156-383 15-257 (351)
251 cd00983 recA RecA is a bacter 95.8 0.019 4.1E-07 64.2 7.2 84 179-268 53-142 (325)
252 cd01120 RecA-like_NTPases RecA 95.8 0.029 6.3E-07 57.3 8.2 40 183-223 1-40 (165)
253 cd01133 F1-ATPase_beta F1 ATP 95.7 0.023 5E-07 61.7 7.2 86 182-268 70-172 (274)
254 KOG2739 Leucine-rich acidic nu 95.7 0.0062 1.4E-07 63.7 2.7 106 567-675 40-154 (260)
255 PF07693 KAP_NTPase: KAP famil 95.7 0.28 6.2E-06 56.7 16.9 43 160-205 2-44 (325)
256 cd03238 ABC_UvrA The excision 95.7 0.061 1.3E-06 55.0 9.7 112 182-303 22-153 (176)
257 COG2607 Predicted ATPase (AAA+ 95.7 0.033 7.1E-07 57.3 7.5 116 154-298 60-182 (287)
258 TIGR03499 FlhF flagellar biosy 95.7 0.034 7.4E-07 62.1 8.6 87 180-268 193-281 (282)
259 PRK06835 DNA replication prote 95.7 0.013 2.9E-07 66.2 5.4 102 182-298 184-288 (329)
260 PRK12724 flagellar biosynthesi 95.7 0.042 9E-07 63.2 9.2 24 181-204 223-246 (432)
261 PRK00771 signal recognition pa 95.6 0.087 1.9E-06 62.0 11.9 87 180-268 94-184 (437)
262 PHA00729 NTP-binding motif con 95.6 0.027 5.9E-07 59.1 6.9 24 181-204 17-40 (226)
263 TIGR01243 CDC48 AAA family ATP 95.6 0.19 4.2E-06 64.7 16.1 181 154-358 453-657 (733)
264 PRK05703 flhF flagellar biosyn 95.6 0.12 2.7E-06 60.9 13.1 87 181-269 221-309 (424)
265 COG4608 AppF ABC-type oligopep 95.6 0.065 1.4E-06 57.2 9.6 125 182-308 40-179 (268)
266 TIGR02012 tigrfam_recA protein 95.6 0.03 6.4E-07 62.7 7.5 84 179-268 53-142 (321)
267 KOG1051 Chaperone HSP104 and r 95.6 0.069 1.5E-06 67.0 11.3 122 154-285 562-686 (898)
268 KOG2004 Mitochondrial ATP-depe 95.6 0.014 3.1E-07 69.0 5.1 106 152-268 409-514 (906)
269 PRK13695 putative NTPase; Prov 95.6 0.0067 1.5E-07 62.6 2.3 23 183-205 2-24 (174)
270 PF14532 Sigma54_activ_2: Sigm 95.5 0.012 2.5E-07 58.0 3.7 106 157-298 1-109 (138)
271 cd03214 ABC_Iron-Siderophores_ 95.5 0.12 2.5E-06 53.7 11.3 119 182-303 26-162 (180)
272 TIGR02238 recomb_DMC1 meiotic 95.5 0.052 1.1E-06 61.2 9.1 58 179-237 94-156 (313)
273 KOG0731 AAA+-type ATPase conta 95.5 0.21 4.5E-06 61.5 14.5 184 154-360 311-520 (774)
274 PF00158 Sigma54_activat: Sigm 95.5 0.058 1.3E-06 54.8 8.5 45 156-204 1-45 (168)
275 PRK15455 PrkA family serine pr 95.4 0.011 2.5E-07 69.6 3.7 50 155-204 77-126 (644)
276 cd03115 SRP The signal recogni 95.4 0.075 1.6E-06 54.8 9.5 22 183-204 2-23 (173)
277 COG1618 Predicted nucleotide k 95.4 0.013 2.8E-07 56.4 3.3 36 182-217 6-41 (179)
278 COG1875 NYN ribonuclease and A 95.4 0.048 1E-06 59.7 7.9 130 158-298 228-387 (436)
279 PRK14974 cell division protein 95.4 0.085 1.8E-06 59.8 10.2 90 179-270 138-233 (336)
280 COG2884 FtsE Predicted ATPase 95.4 0.18 4E-06 50.2 11.0 123 182-306 29-204 (223)
281 CHL00195 ycf46 Ycf46; Provisio 95.4 0.11 2.4E-06 62.2 11.7 160 154-332 228-406 (489)
282 PRK14722 flhF flagellar biosyn 95.3 0.048 1.1E-06 62.3 8.3 88 181-270 137-226 (374)
283 PRK09354 recA recombinase A; P 95.3 0.043 9.3E-07 61.9 7.7 84 179-268 58-147 (349)
284 KOG0735 AAA+-type ATPase [Post 95.3 0.11 2.5E-06 61.7 11.1 70 182-268 432-503 (952)
285 COG0468 RecA RecA/RadA recombi 95.3 0.065 1.4E-06 58.5 8.7 88 179-268 58-150 (279)
286 KOG1644 U2-associated snRNP A' 95.3 0.014 3.1E-07 58.3 3.2 85 565-650 59-150 (233)
287 KOG2123 Uncharacterized conser 95.3 0.0015 3.2E-08 67.9 -3.7 41 567-608 38-78 (388)
288 PRK12727 flagellar biosynthesi 95.3 0.079 1.7E-06 62.6 9.8 88 180-269 349-438 (559)
289 cd03247 ABCC_cytochrome_bd The 95.2 0.11 2.4E-06 53.8 10.1 117 182-303 29-161 (178)
290 cd03221 ABCF_EF-3 ABCF_EF-3 E 95.2 0.12 2.7E-06 51.1 9.9 105 182-304 27-132 (144)
291 cd03228 ABCC_MRP_Like The MRP 95.2 0.089 1.9E-06 54.1 9.2 117 182-304 29-160 (171)
292 cd03223 ABCD_peroxisomal_ALDP 95.2 0.16 3.4E-06 51.9 10.8 118 182-303 28-152 (166)
293 TIGR00708 cobA cob(I)alamin ad 95.2 0.074 1.6E-06 53.4 8.0 116 182-299 6-140 (173)
294 cd01122 GP4d_helicase GP4d_hel 95.2 0.15 3.3E-06 57.1 11.7 52 182-235 31-82 (271)
295 PRK12726 flagellar biosynthesi 95.2 0.14 3E-06 57.9 10.9 91 179-270 204-296 (407)
296 cd01131 PilT Pilus retraction 95.2 0.027 5.9E-07 59.3 5.2 110 183-303 3-113 (198)
297 cd00544 CobU Adenosylcobinamid 95.1 0.045 9.7E-07 55.5 6.3 79 184-268 2-82 (169)
298 PLN03187 meiotic recombination 95.1 0.088 1.9E-06 59.8 9.3 59 179-238 124-187 (344)
299 PRK12723 flagellar biosynthesi 95.1 0.15 3.2E-06 59.0 11.2 88 180-270 173-265 (388)
300 PRK05800 cobU adenosylcobinami 95.0 0.028 6.1E-07 57.1 4.8 80 183-268 3-85 (170)
301 cd03222 ABC_RNaseL_inhibitor T 95.0 0.15 3.1E-06 52.4 9.9 103 182-304 26-137 (177)
302 COG1136 SalX ABC-type antimicr 95.0 0.2 4.3E-06 52.7 10.9 61 246-306 147-210 (226)
303 TIGR02239 recomb_RAD51 DNA rep 95.0 0.1 2.2E-06 59.1 9.5 58 179-237 94-156 (316)
304 PRK00625 shikimate kinase; Pro 95.0 0.13 2.9E-06 52.4 9.5 22 183-204 2-23 (173)
305 PF13604 AAA_30: AAA domain; P 95.0 0.028 6.1E-07 59.0 4.6 106 182-298 19-130 (196)
306 KOG2739 Leucine-rich acidic nu 94.9 0.011 2.3E-07 62.0 1.4 80 590-672 40-124 (260)
307 KOG0744 AAA+-type ATPase [Post 94.9 0.086 1.9E-06 56.7 7.9 77 182-268 178-259 (423)
308 PRK08233 hypothetical protein; 94.9 0.065 1.4E-06 55.9 7.3 23 182-204 4-26 (182)
309 cd03216 ABC_Carb_Monos_I This 94.9 0.084 1.8E-06 53.7 7.8 116 182-303 27-146 (163)
310 PRK04301 radA DNA repair and r 94.8 0.14 3.1E-06 58.5 10.4 57 179-236 100-161 (317)
311 COG1126 GlnQ ABC-type polar am 94.8 0.38 8.3E-06 49.3 11.7 123 182-306 29-203 (240)
312 PRK06067 flagellar accessory p 94.8 0.11 2.4E-06 56.6 8.9 87 179-269 23-130 (234)
313 PF00485 PRK: Phosphoribulokin 94.7 0.1 2.3E-06 54.9 8.3 80 183-263 1-87 (194)
314 PF00560 LRR_1: Leucine Rich R 94.7 0.019 4E-07 35.6 1.5 22 571-592 1-22 (22)
315 COG1224 TIP49 DNA helicase TIP 94.7 0.15 3.1E-06 55.9 9.1 49 153-205 38-89 (450)
316 TIGR00959 ffh signal recogniti 94.7 0.15 3.2E-06 59.9 10.1 89 179-269 97-192 (428)
317 cd02027 APSK Adenosine 5'-phos 94.7 0.16 3.4E-06 50.7 9.0 22 183-204 1-22 (149)
318 PRK10867 signal recognition pa 94.7 0.1 2.3E-06 61.2 8.7 25 180-204 99-123 (433)
319 COG1121 ZnuC ABC-type Mn/Zn tr 94.7 0.2 4.4E-06 53.5 10.1 120 182-303 31-203 (254)
320 PRK00889 adenylylsulfate kinas 94.7 0.14 3E-06 53.0 8.8 25 181-205 4-28 (175)
321 PRK07667 uridine kinase; Provi 94.6 0.043 9.2E-07 57.6 5.1 38 163-204 3-40 (193)
322 PRK11608 pspF phage shock prot 94.6 0.13 2.8E-06 58.9 9.3 47 154-204 6-52 (326)
323 KOG2123 Uncharacterized conser 94.6 0.0077 1.7E-07 62.8 -0.6 104 568-674 17-127 (388)
324 PTZ00494 tuzin-like protein; P 94.6 1.9 4.1E-05 49.2 17.5 169 151-330 368-543 (664)
325 KOG0733 Nuclear AAA ATPase (VC 94.6 0.36 7.7E-06 56.7 12.4 97 154-269 190-292 (802)
326 PLN03186 DNA repair protein RA 94.6 0.19 4E-06 57.3 10.2 59 179-238 121-184 (342)
327 TIGR02974 phageshock_pspF psp 94.6 0.16 3.4E-06 58.2 9.7 45 156-204 1-45 (329)
328 PHA02244 ATPase-like protein 94.6 0.17 3.7E-06 57.1 9.6 22 183-204 121-142 (383)
329 cd03246 ABCC_Protease_Secretio 94.6 0.13 2.9E-06 52.9 8.4 116 182-303 29-160 (173)
330 KOG0473 Leucine-rich repeat pr 94.5 0.003 6.6E-08 63.9 -3.7 85 566-651 38-122 (326)
331 TIGR02858 spore_III_AA stage I 94.5 0.19 4.1E-06 55.3 9.6 128 163-304 98-234 (270)
332 cd03281 ABC_MSH5_euk MutS5 hom 94.5 0.074 1.6E-06 56.6 6.4 121 182-306 30-161 (213)
333 TIGR01359 UMP_CMP_kin_fam UMP- 94.4 0.15 3.2E-06 53.2 8.4 22 183-204 1-22 (183)
334 PRK13948 shikimate kinase; Pro 94.3 0.31 6.8E-06 50.1 10.4 25 180-204 9-33 (182)
335 COG0572 Udk Uridine kinase [Nu 94.3 0.092 2E-06 54.4 6.4 78 179-260 6-85 (218)
336 PRK14723 flhF flagellar biosyn 94.3 0.28 6E-06 61.2 11.7 86 181-269 185-273 (767)
337 PF00006 ATP-synt_ab: ATP synt 94.3 0.16 3.4E-06 53.7 8.3 82 182-268 16-114 (215)
338 TIGR01817 nifA Nif-specific re 94.3 0.21 4.6E-06 61.8 11.0 48 153-204 195-242 (534)
339 PF12775 AAA_7: P-loop contain 94.3 0.038 8.3E-07 61.0 3.9 95 164-276 23-117 (272)
340 TIGR02236 recomb_radA DNA repa 94.3 0.26 5.6E-06 56.4 10.8 57 179-236 93-154 (310)
341 PRK08533 flagellar accessory p 94.3 0.24 5.1E-06 53.5 9.8 48 181-231 24-71 (230)
342 PTZ00088 adenylate kinase 1; P 94.2 0.056 1.2E-06 57.9 4.9 21 184-204 9-29 (229)
343 PF03215 Rad17: Rad17 cell cyc 94.2 0.23 5.1E-06 59.9 10.5 59 155-217 20-78 (519)
344 COG0563 Adk Adenylate kinase a 94.2 0.083 1.8E-06 54.1 5.8 23 183-205 2-24 (178)
345 PRK05439 pantothenate kinase; 94.2 0.26 5.6E-06 55.1 10.0 25 179-203 84-108 (311)
346 cd03282 ABC_MSH4_euk MutS4 hom 94.2 0.071 1.5E-06 56.2 5.4 120 182-307 30-159 (204)
347 COG1102 Cmk Cytidylate kinase 94.2 0.078 1.7E-06 51.2 5.0 44 183-238 2-45 (179)
348 PRK05986 cob(I)alamin adenolsy 94.1 0.12 2.5E-06 52.8 6.6 118 182-299 23-158 (191)
349 cd03230 ABC_DR_subfamily_A Thi 94.1 0.16 3.5E-06 52.3 7.9 118 182-304 27-160 (173)
350 PF00154 RecA: recA bacterial 94.1 0.12 2.7E-06 57.6 7.4 84 179-268 51-140 (322)
351 TIGR00064 ftsY signal recognit 94.1 0.21 4.5E-06 55.3 9.1 89 179-269 70-164 (272)
352 PTZ00301 uridine kinase; Provi 94.1 0.059 1.3E-06 56.9 4.6 24 181-204 3-26 (210)
353 PF07724 AAA_2: AAA domain (Cd 94.1 0.044 9.6E-07 55.8 3.5 42 181-223 3-45 (171)
354 TIGR01425 SRP54_euk signal rec 94.0 0.26 5.6E-06 57.5 10.1 26 179-204 98-123 (429)
355 PF13238 AAA_18: AAA domain; P 94.0 0.035 7.6E-07 54.0 2.7 21 184-204 1-21 (129)
356 COG0714 MoxR-like ATPases [Gen 94.0 0.22 4.7E-06 57.4 9.4 109 155-283 25-136 (329)
357 PRK05917 DNA polymerase III su 94.0 1.2 2.5E-05 49.3 14.4 118 163-304 6-141 (290)
358 TIGR03877 thermo_KaiC_1 KaiC d 93.9 0.32 6.8E-06 53.0 10.1 49 179-230 19-67 (237)
359 PRK15429 formate hydrogenlyase 93.9 0.21 4.6E-06 63.9 10.2 134 154-298 376-520 (686)
360 KOG1532 GTPase XAB1, interacts 93.9 0.25 5.4E-06 51.9 8.4 61 179-240 17-88 (366)
361 PRK09270 nucleoside triphospha 93.9 0.24 5.2E-06 53.7 9.1 26 179-204 31-56 (229)
362 TIGR00390 hslU ATP-dependent p 93.9 0.14 3.1E-06 58.7 7.4 82 153-235 11-104 (441)
363 PRK07132 DNA polymerase III su 93.9 2.4 5.1E-05 47.5 16.9 156 181-363 18-184 (299)
364 cd02025 PanK Pantothenate kina 93.9 0.2 4.3E-06 53.7 8.2 22 183-204 1-22 (220)
365 cd02019 NK Nucleoside/nucleoti 93.8 0.044 9.6E-07 46.1 2.5 22 183-204 1-22 (69)
366 KOG3864 Uncharacterized conser 93.8 0.0068 1.5E-07 60.6 -2.7 87 1256-1344 103-189 (221)
367 PRK05480 uridine/cytidine kina 93.8 0.051 1.1E-06 58.1 3.6 26 179-204 4-29 (209)
368 cd01125 repA Hexameric Replica 93.8 0.41 9E-06 52.3 10.8 22 183-204 3-24 (239)
369 PRK06547 hypothetical protein; 93.8 0.081 1.8E-06 53.9 4.8 26 179-204 13-38 (172)
370 cd01121 Sms Sms (bacterial rad 93.8 0.33 7.1E-06 56.2 10.2 81 181-268 82-167 (372)
371 PRK06002 fliI flagellum-specif 93.7 0.23 5E-06 58.1 8.9 85 182-268 166-263 (450)
372 PRK06995 flhF flagellar biosyn 93.7 0.37 7.9E-06 57.3 10.6 87 181-269 256-344 (484)
373 TIGR00235 udk uridine kinase. 93.7 0.052 1.1E-06 57.8 3.5 26 179-204 4-29 (207)
374 PRK13949 shikimate kinase; Pro 93.7 0.37 8.1E-06 49.1 9.5 22 183-204 3-24 (169)
375 PRK14721 flhF flagellar biosyn 93.7 0.28 6.1E-06 57.2 9.5 87 180-268 190-278 (420)
376 TIGR00150 HI0065_YjeE ATPase, 93.7 0.098 2.1E-06 50.1 4.8 41 161-205 6-46 (133)
377 TIGR00554 panK_bact pantothena 93.7 0.29 6.4E-06 54.2 9.2 25 179-203 60-84 (290)
378 cd03263 ABC_subfamily_A The AB 93.6 0.63 1.4E-05 50.2 11.7 22 182-203 29-50 (220)
379 KOG0734 AAA+-type ATPase conta 93.6 0.46 1E-05 54.8 10.5 51 154-204 304-360 (752)
380 PTZ00035 Rad51 protein; Provis 93.6 0.5 1.1E-05 54.1 11.2 58 179-237 116-178 (337)
381 COG5238 RNA1 Ran GTPase-activa 93.6 0.023 5E-07 59.2 0.5 88 588-676 25-132 (388)
382 COG0464 SpoVK ATPases of the A 93.6 0.61 1.3E-05 57.3 12.9 135 179-332 274-424 (494)
383 PRK10733 hflB ATP-dependent me 93.6 0.43 9.4E-06 60.0 11.7 158 155-331 153-335 (644)
384 PRK05201 hslU ATP-dependent pr 93.5 0.17 3.7E-06 58.1 7.2 82 153-235 14-107 (443)
385 PF03205 MobB: Molybdopterin g 93.5 0.085 1.8E-06 51.7 4.3 39 182-220 1-39 (140)
386 PRK13765 ATP-dependent proteas 93.5 0.11 2.4E-06 64.2 6.1 75 154-237 31-105 (637)
387 KOG0924 mRNA splicing factor A 93.5 0.33 7.2E-06 57.3 9.4 127 162-300 360-511 (1042)
388 cd03369 ABCC_NFT1 Domain 2 of 93.5 0.81 1.8E-05 48.8 12.1 22 182-203 35-56 (207)
389 PF06309 Torsin: Torsin; Inte 93.4 0.15 3.3E-06 47.7 5.5 48 155-205 26-77 (127)
390 cd03283 ABC_MutS-like MutS-lik 93.4 0.088 1.9E-06 55.3 4.6 22 182-203 26-47 (199)
391 PRK12597 F0F1 ATP synthase sub 93.4 0.14 3.1E-06 60.2 6.6 87 182-268 144-246 (461)
392 PF07726 AAA_3: ATPase family 93.4 0.037 8.1E-07 51.8 1.4 27 184-211 2-28 (131)
393 PF08298 AAA_PrkA: PrkA AAA do 93.4 0.11 2.5E-06 57.8 5.4 51 153-203 60-110 (358)
394 cd03229 ABC_Class3 This class 93.4 0.24 5.2E-06 51.3 7.6 22 182-203 27-48 (178)
395 PRK06762 hypothetical protein; 93.3 0.063 1.4E-06 55.0 3.2 23 182-204 3-25 (166)
396 PRK07276 DNA polymerase III su 93.3 2.5 5.5E-05 46.8 15.7 69 258-328 103-172 (290)
397 cd01124 KaiC KaiC is a circadi 93.3 0.22 4.8E-06 52.1 7.5 37 184-221 2-38 (187)
398 COG1419 FlhF Flagellar GTP-bin 93.3 0.25 5.4E-06 56.1 7.9 88 181-270 203-292 (407)
399 PF01583 APS_kinase: Adenylyls 93.2 0.1 2.2E-06 51.5 4.2 24 182-205 3-26 (156)
400 PF13671 AAA_33: AAA domain; P 93.2 0.069 1.5E-06 53.1 3.2 22 183-204 1-22 (143)
401 cd00267 ABC_ATPase ABC (ATP-bi 93.1 0.24 5.2E-06 50.1 7.1 119 182-305 26-146 (157)
402 PRK12678 transcription termina 93.1 0.11 2.4E-06 61.3 4.9 99 165-268 405-512 (672)
403 PRK10416 signal recognition pa 93.1 0.35 7.5E-06 54.8 8.9 26 180-205 113-138 (318)
404 cd03215 ABC_Carb_Monos_II This 93.1 0.83 1.8E-05 47.5 11.1 23 182-204 27-49 (182)
405 PRK09280 F0F1 ATP synthase sub 93.0 0.31 6.6E-06 57.3 8.5 87 182-268 145-247 (463)
406 PF13306 LRR_5: Leucine rich r 93.0 0.38 8.3E-06 46.6 8.1 13 1326-1339 99-111 (129)
407 PRK03846 adenylylsulfate kinas 93.0 0.18 3.9E-06 53.2 6.1 26 179-204 22-47 (198)
408 COG2842 Uncharacterized ATPase 92.9 1.9 4.2E-05 46.8 13.5 96 182-284 95-190 (297)
409 COG1066 Sms Predicted ATP-depe 92.9 0.36 7.8E-06 54.4 8.3 79 182-268 94-177 (456)
410 PRK11248 tauB taurine transpor 92.9 0.69 1.5E-05 51.1 10.8 23 182-204 28-50 (255)
411 smart00534 MUTSac ATPase domai 92.9 0.073 1.6E-06 55.4 3.0 119 183-306 1-129 (185)
412 KOG0739 AAA+-type ATPase [Post 92.9 1.7 3.6E-05 46.5 12.6 178 154-357 133-334 (439)
413 cd01135 V_A-ATPase_B V/A-type 92.9 0.26 5.7E-06 53.5 7.2 87 182-268 70-175 (276)
414 COG0396 sufC Cysteine desulfur 92.9 0.98 2.1E-05 46.9 10.7 64 247-312 150-217 (251)
415 cd00464 SK Shikimate kinase (S 92.9 0.76 1.7E-05 46.2 10.4 21 184-204 2-22 (154)
416 TIGR01069 mutS2 MutS2 family p 92.9 0.12 2.5E-06 66.0 5.2 186 181-382 322-518 (771)
417 PRK03839 putative kinase; Prov 92.9 0.073 1.6E-06 55.3 2.9 22 183-204 2-23 (180)
418 PF13306 LRR_5: Leucine rich r 92.8 0.32 7E-06 47.1 7.3 15 1325-1339 75-89 (129)
419 PRK00279 adk adenylate kinase; 92.8 0.23 4.9E-06 53.3 6.7 22 183-204 2-23 (215)
420 TIGR03305 alt_F1F0_F1_bet alte 92.8 0.17 3.6E-06 59.2 5.9 87 182-268 139-241 (449)
421 PF08433 KTI12: Chromatin asso 92.8 0.2 4.3E-06 55.1 6.2 24 182-205 2-25 (270)
422 PLN02924 thymidylate kinase 92.8 0.39 8.4E-06 51.3 8.3 55 179-233 14-68 (220)
423 PRK06217 hypothetical protein; 92.8 0.16 3.5E-06 52.8 5.3 23 183-205 3-25 (183)
424 TIGR03740 galliderm_ABC gallid 92.8 0.74 1.6E-05 49.7 10.7 22 182-203 27-48 (223)
425 PF13481 AAA_25: AAA domain; P 92.8 0.41 8.9E-06 50.4 8.5 41 182-222 33-82 (193)
426 PRK05022 anaerobic nitric oxid 92.7 0.32 6.9E-06 59.7 8.6 48 153-204 186-233 (509)
427 PRK04040 adenylate kinase; Pro 92.7 0.088 1.9E-06 54.7 3.2 23 182-204 3-25 (188)
428 TIGR03881 KaiC_arch_4 KaiC dom 92.7 0.38 8.2E-06 52.3 8.3 42 179-221 18-59 (229)
429 TIGR00455 apsK adenylylsulfate 92.7 0.46 1E-05 49.5 8.6 25 180-204 17-41 (184)
430 cd02021 GntK Gluconate kinase 92.7 0.67 1.5E-05 46.4 9.5 22 183-204 1-22 (150)
431 KOG0728 26S proteasome regulat 92.6 1.6 3.6E-05 45.1 11.8 158 155-331 147-331 (404)
432 TIGR03878 thermo_KaiC_2 KaiC d 92.6 0.27 5.8E-06 54.3 7.0 41 179-220 34-74 (259)
433 KOG0738 AAA+-type ATPase [Post 92.6 0.6 1.3E-05 51.9 9.2 24 181-204 245-268 (491)
434 PRK08149 ATP synthase SpaL; Va 92.6 0.33 7.2E-06 56.6 7.9 84 182-268 152-250 (428)
435 KOG0730 AAA+-type ATPase [Post 92.5 0.74 1.6E-05 55.1 10.6 31 179-210 466-496 (693)
436 COG1428 Deoxynucleoside kinase 92.5 0.086 1.9E-06 53.8 2.7 23 182-204 5-27 (216)
437 PRK04328 hypothetical protein; 92.5 0.34 7.3E-06 53.1 7.6 41 180-221 22-62 (249)
438 PF00910 RNA_helicase: RNA hel 92.5 0.074 1.6E-06 49.5 2.1 22 184-205 1-22 (107)
439 COG3640 CooC CO dehydrogenase 92.5 0.16 3.5E-06 52.5 4.6 42 183-225 2-44 (255)
440 TIGR01360 aden_kin_iso1 adenyl 92.5 0.1 2.2E-06 54.8 3.4 24 181-204 3-26 (188)
441 PRK05973 replicative DNA helic 92.5 0.47 1E-05 50.8 8.3 48 181-231 64-111 (237)
442 cd03237 ABC_RNaseL_inhibitor_d 92.4 0.78 1.7E-05 50.2 10.3 23 182-204 26-48 (246)
443 cd02028 UMPK_like Uridine mono 92.4 0.21 4.6E-06 51.5 5.6 22 183-204 1-22 (179)
444 cd03244 ABCC_MRP_domain2 Domai 92.4 0.94 2E-05 48.9 10.9 22 182-203 31-52 (221)
445 PRK08927 fliI flagellum-specif 92.4 0.33 7.2E-06 56.7 7.5 84 182-268 159-257 (442)
446 KOG0473 Leucine-rich repeat pr 92.4 0.012 2.5E-07 59.9 -3.6 88 582-671 30-118 (326)
447 COG4618 ArpD ABC-type protease 92.4 1 2.2E-05 52.2 11.1 22 182-203 363-384 (580)
448 TIGR01039 atpD ATP synthase, F 92.3 0.31 6.8E-06 56.9 7.3 87 182-268 144-246 (461)
449 cd01134 V_A-ATPase_A V/A-type 92.3 0.92 2E-05 50.9 10.5 60 165-232 146-206 (369)
450 PRK08972 fliI flagellum-specif 92.3 0.45 9.7E-06 55.4 8.5 84 182-268 163-261 (444)
451 PRK10463 hydrogenase nickel in 92.3 0.39 8.5E-06 52.7 7.6 87 179-270 102-195 (290)
452 PF13504 LRR_7: Leucine rich r 92.2 0.067 1.4E-06 30.6 0.9 14 595-608 3-16 (17)
453 cd03245 ABCC_bacteriocin_expor 92.2 0.99 2.2E-05 48.6 10.9 22 182-203 31-52 (220)
454 PRK13543 cytochrome c biogenes 92.2 1 2.3E-05 48.2 10.9 23 182-204 38-60 (214)
455 PF03266 NTPase_1: NTPase; In 92.2 0.12 2.6E-06 52.5 3.3 22 184-205 2-23 (168)
456 cd03220 ABC_KpsT_Wzt ABC_KpsT_ 92.2 0.86 1.9E-05 49.2 10.2 23 182-204 49-71 (224)
457 COG0541 Ffh Signal recognition 92.2 2.4 5.1E-05 48.6 13.6 75 162-238 78-157 (451)
458 COG2019 AdkA Archaeal adenylat 92.2 0.12 2.6E-06 50.2 3.0 24 181-204 4-27 (189)
459 cd01132 F1_ATPase_alpha F1 ATP 92.2 0.33 7.1E-06 52.8 6.7 82 182-268 70-170 (274)
460 KOG3347 Predicted nucleotide k 92.2 0.2 4.3E-06 47.6 4.3 69 183-260 9-77 (176)
461 COG1936 Predicted nucleotide k 92.1 0.11 2.4E-06 51.1 2.8 20 183-202 2-21 (180)
462 PF10236 DAP3: Mitochondrial r 92.1 2.9 6.2E-05 47.4 14.6 49 312-361 258-306 (309)
463 TIGR03522 GldA_ABC_ATP gliding 92.1 1.1 2.3E-05 51.0 11.3 23 182-204 29-51 (301)
464 cd03243 ABC_MutS_homologs The 92.1 0.12 2.7E-06 54.7 3.6 22 182-203 30-51 (202)
465 PRK11247 ssuB aliphatic sulfon 92.1 1.3 2.8E-05 48.9 11.6 22 182-203 39-60 (257)
466 cd02024 NRK1 Nicotinamide ribo 92.1 0.094 2E-06 54.0 2.4 22 183-204 1-22 (187)
467 cd03278 ABC_SMC_barmotin Barmo 92.1 0.51 1.1E-05 49.6 8.0 20 183-202 24-43 (197)
468 TIGR03574 selen_PSTK L-seryl-t 92.1 0.21 4.7E-06 54.9 5.5 21 184-204 2-22 (249)
469 cd03233 ABC_PDR_domain1 The pl 92.0 1.2 2.6E-05 47.1 11.0 22 182-203 34-55 (202)
470 cd03231 ABC_CcmA_heme_exporter 92.0 0.93 2E-05 48.0 10.1 23 182-204 27-49 (201)
471 PF03308 ArgK: ArgK protein; 92.0 0.17 3.8E-06 53.7 4.3 64 162-229 14-78 (266)
472 PRK06731 flhF flagellar biosyn 92.0 0.79 1.7E-05 50.3 9.6 88 182-270 76-165 (270)
473 TIGR00764 lon_rel lon-related 92.0 0.25 5.4E-06 61.4 6.4 75 154-237 18-92 (608)
474 PRK13647 cbiO cobalt transport 92.0 0.77 1.7E-05 51.3 9.8 22 182-203 32-53 (274)
475 PRK09544 znuC high-affinity zi 92.0 0.87 1.9E-05 50.1 10.1 23 182-204 31-53 (251)
476 cd00984 DnaB_C DnaB helicase C 91.9 0.78 1.7E-05 50.3 9.8 52 181-234 13-64 (242)
477 cd03217 ABC_FeS_Assembly ABC-t 91.9 0.56 1.2E-05 49.6 8.2 118 182-303 27-168 (200)
478 cd03232 ABC_PDR_domain2 The pl 91.9 0.57 1.2E-05 49.1 8.3 22 182-203 34-55 (192)
479 TIGR03498 FliI_clade3 flagella 91.9 0.5 1.1E-05 55.2 8.4 85 182-268 141-239 (418)
480 cd03213 ABCG_EPDR ABCG transpo 91.9 0.89 1.9E-05 47.8 9.7 22 182-203 36-57 (194)
481 cd01136 ATPase_flagellum-secre 91.9 0.74 1.6E-05 51.9 9.4 84 182-268 70-168 (326)
482 cd03254 ABCC_Glucan_exporter_l 91.8 1.2 2.6E-05 48.4 10.9 23 182-204 30-52 (229)
483 PRK05922 type III secretion sy 91.8 0.52 1.1E-05 55.1 8.3 84 182-268 158-256 (434)
484 PRK10875 recD exonuclease V su 91.8 0.79 1.7E-05 56.7 10.4 116 182-300 168-303 (615)
485 cd02023 UMPK Uridine monophosp 91.8 0.1 2.3E-06 55.1 2.5 22 183-204 1-22 (198)
486 cd03240 ABC_Rad50 The catalyti 91.8 0.62 1.3E-05 49.3 8.3 54 251-304 131-188 (204)
487 TIGR02322 phosphon_PhnN phosph 91.7 0.13 2.7E-06 53.5 3.1 23 182-204 2-24 (179)
488 PRK00131 aroK shikimate kinase 91.7 0.13 2.8E-06 53.2 3.1 23 182-204 5-27 (175)
489 PRK09519 recA DNA recombinatio 91.7 0.49 1.1E-05 59.3 8.4 84 179-268 58-147 (790)
490 PRK10751 molybdopterin-guanine 91.7 0.16 3.5E-06 51.3 3.5 26 180-205 5-30 (173)
491 KOG0736 Peroxisome assembly fa 91.6 1.1 2.4E-05 54.3 10.8 177 156-359 403-599 (953)
492 PRK11388 DNA-binding transcrip 91.6 0.74 1.6E-05 58.6 10.3 47 154-204 325-371 (638)
493 cd01428 ADK Adenylate kinase ( 91.6 0.63 1.4E-05 49.0 8.3 21 184-204 2-22 (194)
494 PRK11823 DNA repair protein Ra 91.6 0.72 1.6E-05 55.1 9.6 81 181-268 80-165 (446)
495 COG1703 ArgK Putative periplas 91.6 0.19 4.2E-06 54.0 4.1 64 164-231 38-102 (323)
496 KOG2170 ATPase of the AAA+ sup 91.6 0.76 1.6E-05 49.5 8.4 53 153-205 81-134 (344)
497 TIGR00416 sms DNA repair prote 91.6 0.97 2.1E-05 54.1 10.5 41 179-220 92-132 (454)
498 PF03969 AFG1_ATPase: AFG1-lik 91.5 0.67 1.5E-05 53.4 8.7 100 179-299 60-167 (362)
499 COG4181 Predicted ABC-type tra 91.5 1.7 3.7E-05 42.7 9.8 85 222-307 121-215 (228)
500 TIGR03771 anch_rpt_ABC anchore 91.5 1.4 3E-05 47.5 10.9 23 182-204 7-29 (223)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=5.7e-85 Score=807.83 Aligned_cols=655 Identities=30% Similarity=0.453 Sum_probs=514.5
Q ss_pred HHHHhhhChHHHHHHHHHHHHHHHHHHHHHhhcccCcHHHHHHHHHHHHHHHhhHHHHHhHHHHHHHHHhhhcccccccc
Q 000594 6 LKLAGQEGVRSKLKKWQKTLKTIEAVLIDAEEKQLTDRAVKLWLDDLRDLAYDAEDVLDEFATEAGLRLLKKREASSSRV 85 (1402)
Q Consensus 6 ~e~~~~~~v~~~~~~l~~~l~~i~~~l~~a~~~~~~~~~~~~wl~~~r~~~yd~ed~ld~~~~~~~~~~~~~~~~~~~~~ 85 (1402)
.++....|+++.+..|++.|..++++++||++++.....++.|.+.++|++|++||.++.|.......+..+.-..+...
T Consensus 18 ~~~~~~~~~~~~i~~Lk~~L~~l~~~l~d~~a~~~~~~~~~~~~e~~~~~~~~~e~~~~~~~v~~~~~~~~~~l~~~~~~ 97 (889)
T KOG4658|consen 18 RESECLDGKDNYILELKENLKALQSALEDLDAKRDDLERRVNWEEDVGDLVYLAEDIIWLFLVEEIERKANDLLSTRSVE 97 (889)
T ss_pred HHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhhhhHHH
Confidence 45666778999999999999999999999999998889999999999999999999999999887665432211111111
Q ss_pred cccccccccCCCccccccchHHHHHHHHHHHHHHHHhhcccccccccCCCCCCccccCCCCCCcCCCCCccccchHHHHH
Q 000594 86 RSLIQGVSSGASSVMSGISMRPKIKEISSRLEELRKRTDVLQLEKIAGGSPHTAAVRQRPPTTCLTSEPAVYGRDEDKAR 165 (1402)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~i~~i~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vGr~~~~~~ 165 (1402)
.+.... ..++++.+..+..+.+|+..+.+..+.++.............+....++.+...+.. ||.++.+++
T Consensus 98 ~~~~c~-------~~~~~~~~~~~~~~~~rv~~~l~~ve~l~~~~~~~~~~~~~~~~~~~e~~~~~~~~~-VG~e~~~~k 169 (889)
T KOG4658|consen 98 RQRLCL-------CGFCSKNVSDSYKYGKRVSKVLREVESLGSKGVFEVVGESLDPREKVETRPIQSESD-VGLETMLEK 169 (889)
T ss_pred HHHHhh-------hhhHhHhhhhhHhHHHHHHHHHHHHHHhccccceecccccccchhhcccCCCCcccc-ccHHHHHHH
Confidence 111110 134456666677777777777777766665442211111011111112334444444 999999999
Q ss_pred HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc--cccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCc-
Q 000594 166 ILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK--LTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDL- 242 (1402)
Q Consensus 166 l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~- 242 (1402)
+.+.|..++. .+++|+||||+||||||+.++|+. ++.+||.++||+||+.++...++.+|++.++......
T Consensus 170 l~~~L~~d~~------~iv~i~GMGGvGKTTL~~qi~N~~~~v~~~Fd~~iWV~VSk~f~~~~iq~~Il~~l~~~~~~~~ 243 (889)
T KOG4658|consen 170 LWNRLMEDDV------GIVGIYGMGGVGKTTLARQIFNKFDEVGNHFDGVIWVVVSKEFTTRKIQQTILERLGLLDEEWE 243 (889)
T ss_pred HHHHhccCCC------CEEEEECCCcccHHHHHHHHhcccchhcccCceEEEEEEcccccHHhHHHHHHHHhccCCcccc
Confidence 9999987542 799999999999999999999987 7899999999999999999999999999998754432
Q ss_pred -CchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhh-cCCCcceeecccCCCh
Q 000594 243 -KDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVAST-MGSGKNYELELKLLSD 320 (1402)
Q Consensus 243 -~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~-~~~~~~~~~~l~~L~~ 320 (1402)
...++++..+.+.|++|||+|||||||++ .+|+.+..++|...+||+|++|||+++|+.. +++.. .++++.|+.
T Consensus 244 ~~~~~~~~~~i~~~L~~krfllvLDDIW~~--~dw~~I~~~~p~~~~g~KvvlTTRs~~V~~~~m~~~~--~~~v~~L~~ 319 (889)
T KOG4658|consen 244 DKEEDELASKLLNLLEGKRFLLVLDDIWEE--VDWDKIGVPFPSRENGSKVVLTTRSEEVCGRAMGVDY--PIEVECLTP 319 (889)
T ss_pred hhhHHHHHHHHHHHhccCceEEEEeccccc--ccHHhcCCCCCCccCCeEEEEEeccHhhhhccccCCc--cccccccCc
Confidence 23468899999999999999999999998 6799999999999999999999999999998 66644 445999999
Q ss_pred hhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHhhhhcccCCC-----CCChh
Q 000594 321 DDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTILDSKIWNLQD-----KTEIP 395 (1402)
Q Consensus 321 ~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~-----~~~i~ 395 (1402)
+|||+||++.||..... .++.++++|++|+++|+|+|||++++|+.|+.+.+..+|+++.+...+...+ .+.+.
T Consensus 320 ~eaW~LF~~~v~~~~~~-~~~~i~~lak~v~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~ 398 (889)
T KOG4658|consen 320 EEAWDLFQKKVGPNTLG-SHPDIEELAKEVAEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESIL 398 (889)
T ss_pred cccHHHHHHhhcccccc-ccccHHHHHHHHHHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhH
Confidence 99999999999866432 3455899999999999999999999999999999999999999876555222 45789
Q ss_pred HHHHHHhccCcHHHHHHHhHhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHHHHHhCccccccC--CCC
Q 000594 396 SVLKLSYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFHDLLSRSMFQKSS--NSE 473 (1402)
Q Consensus 396 ~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~r~l~~~~~--~~~ 473 (1402)
++|++||+.||+++|.||+|||+||+||.|+++.||.+|||||||.+..++.+++++|++|+.+|++|+|++... ...
T Consensus 399 ~iLklSyd~L~~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~ 478 (889)
T KOG4658|consen 399 PILKLSYDNLPEELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRK 478 (889)
T ss_pred HhhhccHhhhhHHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccce
Confidence 999999999999999999999999999999999999999999999887778999999999999999999998765 346
Q ss_pred CcEEEchhHHHHHHHhhc-----CceEeecCc--cccccccccccceeeeeeecCCCCCcccchhhhcccCCcceecccc
Q 000594 474 SKYVMHDLVHDLAQWASG-----ETWFRLDDQ--FSVDRQSKAFEKVRHSSYISNGPFHGMDKFKVLDKVENLRTFLPIS 546 (1402)
Q Consensus 474 ~~~~mHdlv~~~~~~~~~-----~~~~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~~~~~~~~~~~~~~Lr~l~~~~ 546 (1402)
..|+|||+|||+|.++|+ ++...+.+. .....+...+..+|+++++++.... ......+++++||+.+.
T Consensus 479 ~~~kmHDvvRe~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~----~~~~~~~~~L~tLll~~ 554 (889)
T KOG4658|consen 479 ETVKMHDVVREMALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH----IAGSSENPKLRTLLLQR 554 (889)
T ss_pred eEEEeeHHHHHHHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh----ccCCCCCCccceEEEee
Confidence 789999999999999999 454443322 1112233455778999998743222 12234556899998876
Q ss_pred ccccccccccCChhhhhhhccCCCcccEEEecccc-cccccccccccccccceeccCccccccchhhhcCCCCcEEecCC
Q 000594 547 VEERSFYFRHISPMVLSDLLPKCKKLRVLSLGRYL-ITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSN 625 (1402)
Q Consensus 547 ~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~-i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~ 625 (1402)
... ....+...+|..++.||||||++|. +.++|++|++|.|||||+|+++.|..||.++++|+.|.+||+.+
T Consensus 555 n~~-------~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~ 627 (889)
T KOG4658|consen 555 NSD-------WLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEV 627 (889)
T ss_pred cch-------hhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheecccc
Confidence 531 0234456679999999999999875 78999999999999999999999999999999999999999999
Q ss_pred ccccccCchhhhcccccccccccCcccccccccCcccccccccccceecCCCCCCChhcccccccc
Q 000594 626 CWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFL 691 (1402)
Q Consensus 626 ~~~~~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L 691 (1402)
+.....+|..+..|.+||+|.+.... ...-...++.+.+|++|..+.+...+...+..+..+..|
T Consensus 628 ~~~l~~~~~i~~~L~~Lr~L~l~~s~-~~~~~~~l~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L 692 (889)
T KOG4658|consen 628 TGRLESIPGILLELQSLRVLRLPRSA-LSNDKLLLKELENLEHLENLSITISSVLLLEDLLGMTRL 692 (889)
T ss_pred ccccccccchhhhcccccEEEeeccc-cccchhhHHhhhcccchhhheeecchhHhHhhhhhhHHH
Confidence 97777778877889999999997654 222223356666777776555543333223334333333
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=4.4e-63 Score=653.69 Aligned_cols=478 Identities=22% Similarity=0.277 Sum_probs=333.0
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEe---CCC-------
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV---SHD------- 221 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~---~~~------- 221 (1402)
..+.+|||++.++++..+|.... +++++|+||||||+||||||+++|++ +..+|+..+|+.. +..
T Consensus 182 ~~~~~vG~~~~l~~l~~lL~l~~----~~~~vvgI~G~gGiGKTTLA~~l~~~-l~~~F~g~vfv~~~~v~~~~~~~~~~ 256 (1153)
T PLN03210 182 DFEDFVGIEDHIAKMSSLLHLES----EEVRMVGIWGSSGIGKTTIARALFSR-LSRQFQSSVFIDRAFISKSMEIYSSA 256 (1153)
T ss_pred ccccccchHHHHHHHHHHHcccc----CceEEEEEEcCCCCchHHHHHHHHHH-HhhcCCeEEEeeccccccchhhcccc
Confidence 45679999999999999885432 56899999999999999999999986 7788988887642 111
Q ss_pred ----CC-HHHHHHHHHHHhcCCCC-CcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEE
Q 000594 222 ----FD-VLRISKAILESITLSPC-DLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT 295 (1402)
Q Consensus 222 ----~~-~~~~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT 295 (1402)
+. ...++++++.++..... .... ...+++.++++|+||||||||+. ++|+.+.....+.++||+||||
T Consensus 257 ~~~~~~~~~~l~~~~l~~il~~~~~~~~~----~~~~~~~L~~krvLLVLDdv~~~--~~l~~L~~~~~~~~~GsrIIiT 330 (1153)
T PLN03210 257 NPDDYNMKLHLQRAFLSEILDKKDIKIYH----LGAMEERLKHRKVLIFIDDLDDQ--DVLDALAGQTQWFGSGSRIIVI 330 (1153)
T ss_pred cccccchhHHHHHHHHHHHhCCCCcccCC----HHHHHHHHhCCeEEEEEeCCCCH--HHHHHHHhhCccCCCCcEEEEE
Confidence 01 12344555555433221 1111 14567888999999999999875 7899988877777899999999
Q ss_pred ccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChh
Q 000594 296 TRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVD 375 (1402)
Q Consensus 296 tR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~ 375 (1402)
||++.++..++...+ ++++.+++++||+||+++||+... .+.++.+++++|+++|+|+|||++++|++|+.+ +..
T Consensus 331 Trd~~vl~~~~~~~~--~~v~~l~~~ea~~LF~~~Af~~~~--~~~~~~~l~~~iv~~c~GLPLAl~vlgs~L~~k-~~~ 405 (1153)
T PLN03210 331 TKDKHFLRAHGIDHI--YEVCLPSNELALEMFCRSAFKKNS--PPDGFMELASEVALRAGNLPLGLNVLGSYLRGR-DKE 405 (1153)
T ss_pred eCcHHHHHhcCCCeE--EEecCCCHHHHHHHHHHHhcCCCC--CcHHHHHHHHHHHHHhCCCcHHHHHHHHHHcCC-CHH
Confidence 999999987665544 459999999999999999997643 234688999999999999999999999999987 678
Q ss_pred HHHHHhhhhcccCCCCCChhHHHHHHhccCcH-HHHHHHhHhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHH
Q 000594 376 EWRTILDSKIWNLQDKTEIPSVLKLSYHHLPS-HLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGS 454 (1402)
Q Consensus 376 ~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~-~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~ 454 (1402)
+|+.++++..... +.+|.++|++||++|++ ..|.||+++|+||.++.++ .+..|+|.+.... +
T Consensus 406 ~W~~~l~~L~~~~--~~~I~~~L~~SYd~L~~~~~k~~Fl~ia~ff~~~~~~---~v~~~l~~~~~~~-----------~ 469 (1153)
T PLN03210 406 DWMDMLPRLRNGL--DGKIEKTLRVSYDGLNNKKDKAIFRHIACLFNGEKVN---DIKLLLANSDLDV-----------N 469 (1153)
T ss_pred HHHHHHHHHHhCc--cHHHHHHHHHhhhccCccchhhhhheehhhcCCCCHH---HHHHHHHhcCCCc-----------h
Confidence 9999998765433 34799999999999987 5999999999999987654 4777888775532 1
Q ss_pred HHHHHHHhCccccccCCCCCcEEEchhHHHHHHHhhcCce-------EeecCc--cccccccccccceeeeeeecCCCCC
Q 000594 455 KYFHDLLSRSMFQKSSNSESKYVMHDLVHDLAQWASGETW-------FRLDDQ--FSVDRQSKAFEKVRHSSYISNGPFH 525 (1402)
Q Consensus 455 ~~~~~L~~r~l~~~~~~~~~~~~mHdlv~~~~~~~~~~~~-------~~~~~~--~~~~~~~~~~~~~r~ls~~~~~~~~ 525 (1402)
.-++.|+++||++... ..+.|||++|+||++++.++. +..... ...........+++++++.......
T Consensus 470 ~~l~~L~~ksLi~~~~---~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~~~di~~vl~~~~g~~~v~~i~l~~~~~~~ 546 (1153)
T PLN03210 470 IGLKNLVDKSLIHVRE---DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVDAKDICDVLEDNTGTKKVLGITLDIDEIDE 546 (1153)
T ss_pred hChHHHHhcCCEEEcC---CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeCHHHHHHHHHhCcccceeeEEEeccCccce
Confidence 2388999999998743 579999999999999987653 111100 0000112223456666654311111
Q ss_pred cccchhhhcccCCcceeccccccccccccccCChhhhhhhccCC-CcccEEEecccccccccccccccccccceeccCcc
Q 000594 526 GMDKFKVLDKVENLRTFLPISVEERSFYFRHISPMVLSDLLPKC-KKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSW 604 (1402)
Q Consensus 526 ~~~~~~~~~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~l-~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~ 604 (1402)
..-.-.++.+|++|+.|......... ...... .++..|..+ ..||.|++.++.+..+|..| .+.+|++|+|++|.
T Consensus 547 ~~i~~~aF~~m~~L~~L~~~~~~~~~--~~~~~~-~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~ 622 (1153)
T PLN03210 547 LHIHENAFKGMRNLLFLKFYTKKWDQ--KKEVRW-HLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSK 622 (1153)
T ss_pred eeecHHHHhcCccccEEEEecccccc--ccccee-ecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcc
Confidence 00122345667777766443221000 000011 122223333 35777777777777777666 45777777777777
Q ss_pred ccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccccCcccccccccCcccccccccc
Q 000594 605 IQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGMKELKCLRTL 669 (1402)
Q Consensus 605 i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L 669 (1402)
+..+|.++..+++|++|+|++|..++.+|. ++.+++|++|++++|..+..+|..++++++|+.|
T Consensus 623 l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 623 LEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred ccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 777777777777777777777655666664 6677777777777776666666655555555554
No 3
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=100.00 E-value=8e-42 Score=388.27 Aligned_cols=276 Identities=37% Similarity=0.657 Sum_probs=223.9
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccccCceeEEEeCCCCCHHHHHHHHHHHhcC
Q 000594 159 RDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSHDFDVLRISKAILESITL 237 (1402)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 237 (1402)
||.++++|.++|.... .+.++|+|+||||+||||||++++++. ++.+|+.++|+.++...+..+++..|+.+++.
T Consensus 1 re~~~~~l~~~L~~~~----~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~ 76 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNS----NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGE 76 (287)
T ss_dssp -HHHHHHHHHHHHTTT----TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHhhCCC----CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccc
Confidence 7899999999998754 557899999999999999999999876 78999999999999999999999999999988
Q ss_pred CCC---CcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCCcceeec
Q 000594 238 SPC---DLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSGKNYELE 314 (1402)
Q Consensus 238 ~~~---~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~ 314 (1402)
... ...+.++....+++.++++++||||||||+. ..|+.+...++....|++||||||+..++..+... .+.++
T Consensus 77 ~~~~~~~~~~~~~~~~~l~~~L~~~~~LlVlDdv~~~--~~~~~l~~~~~~~~~~~kilvTTR~~~v~~~~~~~-~~~~~ 153 (287)
T PF00931_consen 77 PDSSISDPKDIEELQDQLRELLKDKRCLLVLDDVWDE--EDLEELREPLPSFSSGSKILVTTRDRSVAGSLGGT-DKVIE 153 (287)
T ss_dssp C-STSSCCSSHHHHHHHHHHHHCCTSEEEEEEEE-SH--HHH-------HCHHSS-EEEEEESCGGGGTTHHSC-EEEEE
T ss_pred cccccccccccccccccchhhhccccceeeeeeeccc--ccccccccccccccccccccccccccccccccccc-ccccc
Confidence 743 3466788999999999999999999999876 68988888888877899999999999998776542 45567
Q ss_pred ccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHhhhhcccCCC----
Q 000594 315 LKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTILDSKIWNLQD---- 390 (1402)
Q Consensus 315 l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~~~---- 390 (1402)
+++|+.++|++||.+.++... ....+...+.+++|+++|+|+||||+++|++|+.+.+..+|+.+++........
T Consensus 154 l~~L~~~ea~~L~~~~~~~~~-~~~~~~~~~~~~~i~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~ 232 (287)
T PF00931_consen 154 LEPLSEEEALELFKKRAGRKE-SESPEDLEDLAKEIVEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDY 232 (287)
T ss_dssp CSS--HHHHHHHHHHHHTSHS-----TTSCTHHHHHHHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGS
T ss_pred ccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 999999999999999997654 222344577899999999999999999999997666778999998775554432
Q ss_pred CCChhHHHHHHhccCcHHHHHHHhHhccCCCCccccHHHHHHHHHHhcCccc
Q 000594 391 KTEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQ 442 (1402)
Q Consensus 391 ~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 442 (1402)
...+..++.+||+.||+++|+||+|||+||+++.|+++.++++|+|||+|..
T Consensus 233 ~~~~~~~l~~s~~~L~~~~~~~f~~L~~f~~~~~i~~~~li~lW~~e~~i~~ 284 (287)
T PF00931_consen 233 DRSVFSALELSYDSLPDELRRCFLYLSIFPEGVPIPRERLIRLWVAEGFISS 284 (287)
T ss_dssp CHHHHHHHHHHHHSSHTCCHHHHHHGGGSGTTS-EEHHHHHHHHTT-HHTC-
T ss_pred cccccccceechhcCCccHHHHHhhCcCCCCCceECHHHHHHHHHHCCCCcc
Confidence 4568999999999999999999999999999999999999999999999965
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=7.6e-36 Score=398.28 Aligned_cols=226 Identities=14% Similarity=0.092 Sum_probs=128.7
Q ss_pred cccccccccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeee
Q 000594 1114 TLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISIS 1193 (1402)
Q Consensus 1114 ~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~ 1193 (1402)
+|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|+.|+++
T Consensus 381 ~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~ 460 (968)
T PLN00113 381 NLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLA 460 (968)
T ss_pred CCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECc
Confidence 45556666665555566666666777777777776666666666777777777777766555666666667777777777
Q ss_pred cCCCCcccCCCCCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCC-CCCCCCceeEeccCCCCccccc
Q 000594 1194 GCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEE-GLSTNLTSVGISGDNIYKPLVK 1272 (1402)
Q Consensus 1194 ~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~~~~~~ 1272 (1402)
+|.....+|.... .++|+.|++++|.....+|.. ..+++|+.|++++|.....++.
T Consensus 461 ~n~~~~~~p~~~~-----------------------~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 461 RNKFFGGLPDSFG-----------------------SKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred CceeeeecCcccc-----------------------cccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 7665544443221 234444444444332233321 2234455555555544444443
Q ss_pred cccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCCCCCCCC
Q 000594 1273 WGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFPEAGF 1352 (1402)
Q Consensus 1273 ~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~ 1352 (1402)
.+.++++|++|+|++|.....+|.. +..+++|+.|++++|+....+| ..+.++++|+.|++++|+-...+|..+.
T Consensus 518 -~~~~l~~L~~L~Ls~N~l~~~~p~~---~~~l~~L~~L~Ls~N~l~~~~p-~~l~~l~~L~~l~ls~N~l~~~~p~~~~ 592 (968)
T PLN00113 518 -ELSSCKKLVSLDLSHNQLSGQIPAS---FSEMPVLSQLDLSQNQLSGEIP-KNLGNVESLVQVNISHNHLHGSLPSTGA 592 (968)
T ss_pred -HHcCccCCCEEECCCCcccccCChh---HhCcccCCEEECCCCcccccCC-hhHhcCcccCEEeccCCcceeeCCCcch
Confidence 3555555555555555444444431 2234555555555544333444 4566777777777777766666776555
Q ss_pred ccccccccccCCcch
Q 000594 1353 PSSLLSLEIRGCPLL 1367 (1402)
Q Consensus 1353 ~~sL~~L~i~~cp~l 1367 (1402)
..++....+.++|.+
T Consensus 593 ~~~~~~~~~~~n~~l 607 (968)
T PLN00113 593 FLAINASAVAGNIDL 607 (968)
T ss_pred hcccChhhhcCCccc
Confidence 555555555665544
No 5
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=100.00 E-value=9.1e-35 Score=387.95 Aligned_cols=466 Identities=20% Similarity=0.201 Sum_probs=251.5
Q ss_pred hhhccCCCcccEEEecccccc-ccccccc-ccccccceeccCcccc-ccchhhhcCCCCcEEecCCccccccCchhhhcc
Q 000594 563 SDLLPKCKKLRVLSLGRYLIT-EVPVSIG-CLKHLRYLNFSNSWIQ-CLPEVITSLFNLEILILSNCWFLLKLPSSIGNL 639 (1402)
Q Consensus 563 ~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~-~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L 639 (1402)
+..|..+++|++|+|++|.+. .+|..+. .+.+||+|+|++|.+. .+|. +.+++|++|+|++|.+.+.+|..++++
T Consensus 86 ~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l 163 (968)
T PLN00113 86 SSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSF 163 (968)
T ss_pred ChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcC
Confidence 345667788888888888775 6676644 7888888888888776 3443 457788888888887666778888888
Q ss_pred cccccccccCcccccccccCcccccccccccceecCCCCCCChhccccccccCceEEEeCccCcCChhhhhhhcccCCCC
Q 000594 640 VNLHHLDIEGAYQLCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKLREKND 719 (1402)
Q Consensus 640 ~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~ 719 (1402)
++|++|++++|.....+|..++++++|++|+...+.. ... ....+..+.+
T Consensus 164 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l------------------------~~~------~p~~l~~l~~ 213 (968)
T PLN00113 164 SSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQL------------------------VGQ------IPRELGQMKS 213 (968)
T ss_pred CCCCEEECccCcccccCChhhhhCcCCCeeeccCCCC------------------------cCc------CChHHcCcCC
Confidence 8888888888775567777777777777775422110 000 0011222333
Q ss_pred CCeeEEEeecCCCCCCcChHHHHHHhhhcCCCCCccEEEEEeeCCC-CCCCCcCCCcccceeEEEEecCCCCCCCCC-CC
Q 000594 720 LEVLKLEWRARGDGDSVDEDREKNILDMLKPHCKIKRLEIHSYGGT-RFPSWVGDSSFSKVAVLILRNCQRSTSLPP-LG 797 (1402)
Q Consensus 720 L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~-~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~ 797 (1402)
|+.|+++ ++... .+|.++. .+++|+.|++++|.....+|. ++
T Consensus 214 L~~L~L~----------------------------------~n~l~~~~p~~l~--~l~~L~~L~L~~n~l~~~~p~~l~ 257 (968)
T PLN00113 214 LKWIYLG----------------------------------YNNLSGEIPYEIG--GLTSLNHLDLVYNNLTGPIPSSLG 257 (968)
T ss_pred ccEEECc----------------------------------CCccCCcCChhHh--cCCCCCEEECcCceeccccChhHh
Confidence 3333333 33222 2333332 345555555555554444443 55
Q ss_pred CcCCcCeeeecCCCCceeecccccCCCccccccccccccccCcccccccccccccccccccCcccceeeccccccccCCC
Q 000594 798 QLCSLKDLTIGGMSALKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPKLSGRL 877 (1402)
Q Consensus 798 ~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~l 877 (1402)
.+++|+.|++++|.....++..+. .+++|++|+++++...... +.....+++|+.|++.+| .+.+.+
T Consensus 258 ~l~~L~~L~L~~n~l~~~~p~~l~------~l~~L~~L~Ls~n~l~~~~------p~~~~~l~~L~~L~l~~n-~~~~~~ 324 (968)
T PLN00113 258 NLKNLQYLFLYQNKLSGPIPPSIF------SLQKLISLDLSDNSLSGEI------PELVIQLQNLEILHLFSN-NFTGKI 324 (968)
T ss_pred CCCCCCEEECcCCeeeccCchhHh------hccCcCEEECcCCeeccCC------ChhHcCCCCCcEEECCCC-ccCCcC
Confidence 555555555555433222222221 1333444444333211000 001233445555555554 222233
Q ss_pred CC---CCCCccEEEEeccCCc---cccCCCCCcceEEEEcCCCcccccCCCCCCCCCcccccccccccccccccccccce
Q 000594 878 PN---HLPSLEEIVIAGCMHL---AVSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSQKFQKVEH 951 (1402)
Q Consensus 878 p~---~l~~L~~L~l~~~~~l---~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~ 951 (1402)
|. .+++|+.|++.+|... ...+..+++|+.|++++|...
T Consensus 325 ~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~----------------------------------- 369 (968)
T PLN00113 325 PVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLT----------------------------------- 369 (968)
T ss_pred ChhHhcCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeE-----------------------------------
Confidence 32 2333334433333211 011222333333333333211
Q ss_pred EEEeccCCchhhhccCCCCcccccccCcceeEeecCCCcccccc-ccCCCCcceEEEecCCCccCCchhhhcCCCcchhh
Q 000594 952 LKIVGCEGFANEIRLGKPLQGLHSFTCLKDLHIGICPTLVSLRN-ICFLSSLSEITIEHCNALTSLTDGMIHNNAQLKVL 1030 (1402)
Q Consensus 952 L~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L 1030 (1402)
+..+..+..+++|+.|++++|.....++. +..+++|+.|++++|+.-..+|.. +..+++|+.|
T Consensus 370 ---------------~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L 433 (968)
T PLN00113 370 ---------------GEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSE-FTKLPLVYFL 433 (968)
T ss_pred ---------------eeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChh-HhcCCCCCEE
Confidence 11223345566777777777764444433 456677777777774433344444 6667777777
Q ss_pred hhccccCcccccccC-CcCcccEEEeccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCC
Q 000594 1031 RIKGCHSLTSIAREH-LPSSLKAIEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGG 1109 (1402)
Q Consensus 1031 ~L~~c~~l~~i~~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~ 1109 (1402)
++++|.....++... ..++|+.|++++|.... .+|..
T Consensus 434 ~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------------------------------------~~p~~ 471 (968)
T PLN00113 434 DISNNNLQGRINSRKWDMPSLQMLSLARNKFFG------------------------------------------GLPDS 471 (968)
T ss_pred ECcCCcccCccChhhccCCCCcEEECcCceeee------------------------------------------ecCcc
Confidence 777654333333211 13455555555554332 22221
Q ss_pred CccccccccccccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCe
Q 000594 1110 RLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHR 1189 (1402)
Q Consensus 1110 ~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~ 1189 (1402)
...++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+..+++|++|++++|...+.+|..+.++++|+.
T Consensus 472 ~~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 551 (968)
T PLN00113 472 FGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQ 551 (968)
T ss_pred cccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCE
Confidence 12236677777777665666666677777777777777766677777777777777777777666666777777777777
Q ss_pred EeeecCCCCcccC
Q 000594 1190 ISISGCHNLASLP 1202 (1402)
Q Consensus 1190 L~l~~c~~l~~l~ 1202 (1402)
|++++|.....+|
T Consensus 552 L~Ls~N~l~~~~p 564 (968)
T PLN00113 552 LDLSQNQLSGEIP 564 (968)
T ss_pred EECCCCcccccCC
Confidence 7777765444454
No 6
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.90 E-value=2.4e-27 Score=249.30 Aligned_cols=284 Identities=22% Similarity=0.292 Sum_probs=144.1
Q ss_pred ccccCcceeEeecCCCcccccc-ccCCCCcceEEEecCCCccCCchhhhcCCCcchhhhhccccCcccccccCC----cC
Q 000594 974 HSFTCLKDLHIGICPTLVSLRN-ICFLSSLSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIAREHL----PS 1048 (1402)
Q Consensus 974 ~~l~~L~~L~L~~~~~l~~~~~-~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~----~~ 1048 (1402)
..++++..|++.+|. +++.|. .+.+.+|.+|++++ |.++.+|.. ++++ .|+.|.+.|++ +..+-.... ..
T Consensus 249 ~~L~~l~vLDLRdNk-lke~Pde~clLrsL~rLDlSN-N~is~Lp~s-Lgnl-hL~~L~leGNP-lrTiRr~ii~~gT~~ 323 (565)
T KOG0472|consen 249 KHLNSLLVLDLRDNK-LKEVPDEICLLRSLERLDLSN-NDISSLPYS-LGNL-HLKFLALEGNP-LRTIRREIISKGTQE 323 (565)
T ss_pred cccccceeeeccccc-cccCchHHHHhhhhhhhcccC-CccccCCcc-cccc-eeeehhhcCCc-hHHHHHHHHcccHHH
Confidence 467788888888884 555554 56788888999988 888888887 7888 88888888865 222211111 01
Q ss_pred cccEEEe-ccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCcc
Q 000594 1049 SLKAIEV-EDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFK 1127 (1402)
Q Consensus 1049 ~L~~L~l-~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~ 1127 (1402)
-|++|.= ..|..+..- .+..+...+.....+ +.....-+.+.|++++- .++
T Consensus 324 vLKyLrs~~~~dglS~s----------e~~~e~~~t~~~~~~-----------------~~~~~~i~tkiL~~s~~-qlt 375 (565)
T KOG0472|consen 324 VLKYLRSKIKDDGLSQS----------EGGTETAMTLPSESF-----------------PDIYAIITTKILDVSDK-QLT 375 (565)
T ss_pred HHHHHHHhhccCCCCCC----------cccccccCCCCCCcc-----------------cchhhhhhhhhhccccc-ccc
Confidence 1222210 001111000 000000000000000 00001124556666543 444
Q ss_pred cccccccCccc---ccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCC
Q 000594 1128 VLTSECQLPVA---VEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPED 1204 (1402)
Q Consensus 1128 ~l~~~~~~l~~---L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~ 1204 (1402)
.+|.....-.. ....++++|. +..+|..+..+..+.+.-+..++.+.-+|..+..+++|..|++++ +-+.++|.+
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNq-L~elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~N-N~Ln~LP~e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQ-LCELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSN-NLLNDLPEE 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccch-HhhhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeeccc-chhhhcchh
Confidence 55544322222 4556666643 445565555555555555555566666666666777777777775 556666644
Q ss_pred CCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCCCCCCCCceeEeccCCCCccccccccCCcCcccee
Q 000594 1205 ALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEEGLSTNLTSVGISGDNIYKPLVKWGFHKLTSLREL 1284 (1402)
Q Consensus 1205 ~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L 1284 (1402)
+ +.+..||.|+++.| ....+|...+.. ..|+++
T Consensus 454 ~----------------------~~lv~Lq~LnlS~N-rFr~lP~~~y~l------------------------q~lEtl 486 (565)
T KOG0472|consen 454 M----------------------GSLVRLQTLNLSFN-RFRMLPECLYEL------------------------QTLETL 486 (565)
T ss_pred h----------------------hhhhhhheeccccc-ccccchHHHhhH------------------------HHHHHH
Confidence 3 44566777777766 344444422211 112222
Q ss_pred eecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCC
Q 000594 1285 SIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFT 1345 (1402)
Q Consensus 1285 ~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~ 1345 (1402)
+..+..+.+++++ +...+.+|..|++.+ |.++.+| ..++++++|++|++.+ +.++
T Consensus 487 -las~nqi~~vd~~--~l~nm~nL~tLDL~n-Ndlq~IP-p~LgnmtnL~hLeL~g-Npfr 541 (565)
T KOG0472|consen 487 -LASNNQIGSVDPS--GLKNMRNLTTLDLQN-NDLQQIP-PILGNMTNLRHLELDG-NPFR 541 (565)
T ss_pred -HhccccccccChH--HhhhhhhcceeccCC-CchhhCC-hhhccccceeEEEecC-CccC
Confidence 2222334444431 122344444444444 4555565 3577778888888877 3344
No 7
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.9e-24 Score=237.70 Aligned_cols=350 Identities=17% Similarity=0.194 Sum_probs=235.5
Q ss_pred CCcccccccCcceeEeecCCCccccccccCCCC-cceEEEecCCCccCCchhhhcCCCcchhhhhccccCcccccccCCc
Q 000594 969 PLQGLHSFTCLKDLHIGICPTLVSLRNICFLSS-LSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIAREHLP 1047 (1402)
Q Consensus 969 ~~~~~~~l~~L~~L~L~~~~~l~~~~~~~~l~~-L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~ 1047 (1402)
.+..|.++|+|+++++.+| .++.+|.++..++ |+.|+|.+ |.+.++....+..++.|+.||||. +.+..++...+|
T Consensus 94 d~~~f~nl~nLq~v~l~~N-~Lt~IP~f~~~sghl~~L~L~~-N~I~sv~se~L~~l~alrslDLSr-N~is~i~~~sfp 170 (873)
T KOG4194|consen 94 DFEFFYNLPNLQEVNLNKN-ELTRIPRFGHESGHLEKLDLRH-NLISSVTSEELSALPALRSLDLSR-NLISEIPKPSFP 170 (873)
T ss_pred cHHHHhcCCcceeeeeccc-hhhhcccccccccceeEEeeec-cccccccHHHHHhHhhhhhhhhhh-chhhcccCCCCC
Confidence 3445688999999999988 5788888876655 99999999 899999888899999999999999 578888888886
Q ss_pred --CcccEEEeccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCC---Ccccccccccccc
Q 000594 1048 --SSLKAIEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGG---RLPVTLKRLDIKN 1122 (1402)
Q Consensus 1048 --~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~---~~~~~L~~L~l~~ 1122 (1402)
.++++|+++++.. +.+.... ...+.+|..|.++.. .++.+|.. .+ +.|+.|++..
T Consensus 171 ~~~ni~~L~La~N~I-t~l~~~~-----------------F~~lnsL~tlkLsrN-rittLp~r~Fk~L-~~L~~LdLnr 230 (873)
T KOG4194|consen 171 AKVNIKKLNLASNRI-TTLETGH-----------------FDSLNSLLTLKLSRN-RITTLPQRSFKRL-PKLESLDLNR 230 (873)
T ss_pred CCCCceEEeeccccc-ccccccc-----------------ccccchheeeecccC-cccccCHHHhhhc-chhhhhhccc
Confidence 4799999987652 2221111 112223444444331 12222211 11 2555555555
Q ss_pred ccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccC
Q 000594 1123 CDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLP 1202 (1402)
Q Consensus 1123 c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~ 1202 (1402)
|..-..-...|+++++|+.|.|..|.....--..|..+.++++|+|+.|+...--..++.++++|+.|++++ +.+.+|.
T Consensus 231 N~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~-NaI~rih 309 (873)
T KOG4194|consen 231 NRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY-NAIQRIH 309 (873)
T ss_pred cceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch-hhhheee
Confidence 522111133455555555555555554444444455555555555555332222233445555555555554 3444443
Q ss_pred CCCCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCCCC--CCCCceeEeccCCCCccccccccCCcCc
Q 000594 1203 EDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEEGL--STNLTSVGISGDNIYKPLVKWGFHKLTS 1280 (1402)
Q Consensus 1203 ~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~--~~~L~~L~l~~~~~~~~~~~~~l~~l~~ 1280 (1402)
. ..++.+++|++|+|++| .++.++++.+ +..|++|.++.|.+. .+.+..|..+.+
T Consensus 310 ~---------------------d~WsftqkL~~LdLs~N-~i~~l~~~sf~~L~~Le~LnLs~Nsi~-~l~e~af~~lss 366 (873)
T KOG4194|consen 310 I---------------------DSWSFTQKLKELDLSSN-RITRLDEGSFRVLSQLEELNLSHNSID-HLAEGAFVGLSS 366 (873)
T ss_pred c---------------------chhhhcccceeEecccc-ccccCChhHHHHHHHhhhhcccccchH-HHHhhHHHHhhh
Confidence 2 33367889999999987 6888888755 788999999987654 344557889999
Q ss_pred cceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCCCCCCCC-ccccccc
Q 000594 1281 LRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFPEAGF-PSSLLSL 1359 (1402)
Q Consensus 1281 L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~-~~sL~~L 1359 (1402)
|++|+|++|..-..+.+....|..+++|+.|.+.+ |+|+.|+...|..|++|+.|++.+ +-+.++....| +..|++|
T Consensus 367 L~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfsgl~~LE~LdL~~-NaiaSIq~nAFe~m~Lk~L 444 (873)
T KOG4194|consen 367 LHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFSGLEALEHLDLGD-NAIASIQPNAFEPMELKEL 444 (873)
T ss_pred hhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhccCcccceecCCC-Ccceeecccccccchhhhh
Confidence 99999999766566655455677789999999999 899999999999999999999999 67888866656 5588888
Q ss_pred cccCCcch
Q 000594 1360 EIRGCPLL 1367 (1402)
Q Consensus 1360 ~i~~cp~l 1367 (1402)
-+....-|
T Consensus 445 v~nSssfl 452 (873)
T KOG4194|consen 445 VMNSSSFL 452 (873)
T ss_pred hhcccceE
Confidence 77654333
No 8
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.88 E-value=1.8e-25 Score=235.36 Aligned_cols=232 Identities=27% Similarity=0.342 Sum_probs=154.6
Q ss_pred hhhccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccc
Q 000594 563 SDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNL 642 (1402)
Q Consensus 563 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L 642 (1402)
..-+..+..|.||++.+|.+..+|.+++.+..++.|+.++|++.++|+.++.+..|..|+.++| ...++|++|+.+..|
T Consensus 61 ~~dl~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~l~~s~n-~~~el~~~i~~~~~l 139 (565)
T KOG0472|consen 61 REDLKNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVKLDCSSN-ELKELPDSIGRLLDL 139 (565)
T ss_pred cHhhhcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhhhhcccc-ceeecCchHHHHhhh
Confidence 3345677888888888888888888888888888888888888888888888888888888888 467788888888888
Q ss_pred ccccccCcccccccccCcccccccccccceecCCCCCCChhccccccccCceEEEeCccCcCChhhhhhhcccCCCCCCe
Q 000594 643 HHLDIEGAYQLCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKLREKNDLEV 722 (1402)
Q Consensus 643 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~ 722 (1402)
..|+..+|+ +..+|.+++.+.+|..|..-... +..
T Consensus 140 ~dl~~~~N~-i~slp~~~~~~~~l~~l~~~~n~------------------------l~~-------------------- 174 (565)
T KOG0472|consen 140 EDLDATNNQ-ISSLPEDMVNLSKLSKLDLEGNK------------------------LKA-------------------- 174 (565)
T ss_pred hhhhccccc-cccCchHHHHHHHHHHhhccccc------------------------hhh--------------------
Confidence 888888887 78888888888777766431110 000
Q ss_pred eEEEeecCCCCCCcChHHHHHHhhhcCCCCCccEEEEEeeCCCCCCCCcCCCcccceeEEEEecCCCCCCCCCCCCcCCc
Q 000594 723 LKLEWRARGDGDSVDEDREKNILDMLKPHCKIKRLEIHSYGGTRFPSWVGDSSFSKVAVLILRNCQRSTSLPPLGQLCSL 802 (1402)
Q Consensus 723 L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~l~~l~~L 802 (1402)
.++....+..|++|+...|....+|..++ .+.+|..|+|..|+ ...+|.|+.+..|
T Consensus 175 ---------------------l~~~~i~m~~L~~ld~~~N~L~tlP~~lg--~l~~L~~LyL~~Nk-i~~lPef~gcs~L 230 (565)
T KOG0472|consen 175 ---------------------LPENHIAMKRLKHLDCNSNLLETLPPELG--GLESLELLYLRRNK-IRFLPEFPGCSLL 230 (565)
T ss_pred ---------------------CCHHHHHHHHHHhcccchhhhhcCChhhc--chhhhHHHHhhhcc-cccCCCCCccHHH
Confidence 00011112345555555566666777665 46777777777776 4456677777778
Q ss_pred CeeeecCCCCceeecccccCCCccccccccccccccCcccccccccccccccccccCcccceeeccccccccCCCCC
Q 000594 803 KDLTIGGMSALKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPKLSGRLPN 879 (1402)
Q Consensus 803 ~~L~L~~~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~l~~~lp~ 879 (1402)
++|+++. +.++.++.+.... +++|..|++.++. +++... +..-+.+|++|+++++ .++ .+|.
T Consensus 231 ~Elh~g~-N~i~~lpae~~~~-----L~~l~vLDLRdNk-lke~Pd------e~clLrsL~rLDlSNN-~is-~Lp~ 292 (565)
T KOG0472|consen 231 KELHVGE-NQIEMLPAEHLKH-----LNSLLVLDLRDNK-LKEVPD------EICLLRSLERLDLSNN-DIS-SLPY 292 (565)
T ss_pred HHHHhcc-cHHHhhHHHHhcc-----cccceeeeccccc-cccCch------HHHHhhhhhhhcccCC-ccc-cCCc
Confidence 8877766 3455555554322 5566666665543 222221 1334556666666665 333 4444
No 9
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.88 E-value=6.1e-22 Score=263.02 Aligned_cols=340 Identities=19% Similarity=0.286 Sum_probs=206.3
Q ss_pred cccccccCcceeEeecCC--Cc----cccc-cccCC-CCcceEEEecCCCccCCchhhhcCCCcchhhhhccccCccccc
Q 000594 971 QGLHSFTCLKDLHIGICP--TL----VSLR-NICFL-SSLSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIA 1042 (1402)
Q Consensus 971 ~~~~~l~~L~~L~L~~~~--~l----~~~~-~~~~l-~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~ 1042 (1402)
.+|..+++|+.|.+..+. .. ..++ .+..+ ++|+.|.+.+ +.++.+|.. + .+.+|++|++++| .+..++
T Consensus 552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~-~~l~~lP~~-f-~~~~L~~L~L~~s-~l~~L~ 627 (1153)
T PLN03210 552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDK-YPLRCMPSN-F-RPENLVKLQMQGS-KLEKLW 627 (1153)
T ss_pred HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecC-CCCCCCCCc-C-CccCCcEEECcCc-cccccc
Confidence 347888999999886653 10 1122 12333 4688888888 567888875 3 4678888888885 455554
Q ss_pred ccC-CcCcccEEEeccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCC-Ccccccccccc
Q 000594 1043 REH-LPSSLKAIEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGG-RLPVTLKRLDI 1120 (1402)
Q Consensus 1043 ~~~-~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~-~~~~~L~~L~l 1120 (1402)
... ..++|+.|++++|..++.++. ...+++|+.|++++|..+..+|.. ...++|+.|++
T Consensus 628 ~~~~~l~~Lk~L~Ls~~~~l~~ip~-------------------ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L 688 (1153)
T PLN03210 628 DGVHSLTGLRNIDLRGSKNLKEIPD-------------------LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDM 688 (1153)
T ss_pred cccccCCCCCEEECCCCCCcCcCCc-------------------cccCCcccEEEecCCCCccccchhhhccCCCCEEeC
Confidence 332 356788888887776665542 123456777777777766655533 22346777777
Q ss_pred ccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCc-
Q 000594 1121 KNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLA- 1199 (1402)
Q Consensus 1121 ~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~- 1199 (1402)
++|..++.+|..+ ++++|+.|++++|..+..+|.. .++|+.|++++|. ++.+|..+ .+++|+.|.+.+|....
T Consensus 689 ~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~-i~~lP~~~-~l~~L~~L~l~~~~~~~l 762 (1153)
T PLN03210 689 SRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETA-IEEFPSNL-RLENLDELILCEMKSEKL 762 (1153)
T ss_pred CCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCc-cccccccc-cccccccccccccchhhc
Confidence 7777777666554 5667777777777666666543 2466677776643 55566544 45666666666543211
Q ss_pred -----ccCC--CCCCCcccceeeccccccCC-CCCCCCCCCccEEEeccCCCccccCCCCCCCCCceeEeccCCCCcccc
Q 000594 1200 -----SLPE--DALPSNLVGVLIENCDKLKA-PLPTGKLSSLQQLFLKKCPGIVFFPEEGLSTNLTSVGISGDNIYKPLV 1271 (1402)
Q Consensus 1200 -----~l~~--~~~~~~L~~L~l~~c~~l~~-~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~ 1271 (1402)
.++. ...+++|+.|++++|..+.. +...+++++|+.|++++|..++.+|....+++|+.|++++|..+..++
T Consensus 763 ~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~~L~sL~~L~Ls~c~~L~~~p 842 (1153)
T PLN03210 763 WERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGINLESLESLDLSGCSRLRTFP 842 (1153)
T ss_pred cccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCCCccccCEEECCCCCcccccc
Confidence 0100 11234666777776665544 122256667777777777666666665556667777777766655443
Q ss_pred ccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCCCC
Q 000594 1272 KWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFP 1348 (1402)
Q Consensus 1272 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~lp 1348 (1402)
. ..++|++|+++++ .++.+|... ..+++|+.|++.+|++|+.++. .+..+++|+.|++++|++|+.++
T Consensus 843 ~----~~~nL~~L~Ls~n-~i~~iP~si---~~l~~L~~L~L~~C~~L~~l~~-~~~~L~~L~~L~l~~C~~L~~~~ 910 (1153)
T PLN03210 843 D----ISTNISDLNLSRT-GIEEVPWWI---EKFSNLSFLDMNGCNNLQRVSL-NISKLKHLETVDFSDCGALTEAS 910 (1153)
T ss_pred c----cccccCEeECCCC-CCccChHHH---hcCCCCCEEECCCCCCcCccCc-ccccccCCCeeecCCCccccccc
Confidence 2 2356666776663 455555422 2456667777777777776663 45566677777777776666554
No 10
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.87 E-value=1.4e-24 Score=252.73 Aligned_cols=97 Identities=34% Similarity=0.458 Sum_probs=62.5
Q ss_pred ccEEEecccccccccc-cccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccccCc
Q 000594 572 LRVLSLGRYLITEVPV-SIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEGA 650 (1402)
Q Consensus 572 Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~~~ 650 (1402)
+..|++..|.+-..|- .+.+..+|+.|||++|.+...|..|..+.+|+.|+++.| .+..+|.+++++.+|++|.|.+|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n-~i~~vp~s~~~~~~l~~lnL~~n 101 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRN-YIRSVPSSCSNMRNLQYLNLKNN 101 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccccCCchhhhHHHHhhcccchh-hHhhCchhhhhhhcchhheeccc
Confidence 6666666666544432 233444577777777777777777777777777777766 56666766777777777777666
Q ss_pred ccccccccCccccccccccc
Q 000594 651 YQLCELPLGMKELKCLRTLT 670 (1402)
Q Consensus 651 ~~l~~lp~~i~~L~~L~~L~ 670 (1402)
. +..+|.++..+++|+.|+
T Consensus 102 ~-l~~lP~~~~~lknl~~Ld 120 (1081)
T KOG0618|consen 102 R-LQSLPASISELKNLQYLD 120 (1081)
T ss_pred h-hhcCchhHHhhhcccccc
Confidence 5 666666666666666664
No 11
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.87 E-value=4e-23 Score=227.45 Aligned_cols=86 Identities=19% Similarity=0.216 Sum_probs=67.6
Q ss_pred cccEEEecccccccc-cccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccccC
Q 000594 571 KLRVLSLGRYLITEV-PVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEG 649 (1402)
Q Consensus 571 ~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~~ 649 (1402)
.-++||+++|.+..+ +..|.++++|+.+++..|.++.+|...+...||+.|+|.+|.+...-.+++..+..||.|||+.
T Consensus 79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSr 158 (873)
T KOG4194|consen 79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSR 158 (873)
T ss_pred ceeeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhh
Confidence 456788888888877 5668888888888888888888888888888888888888854444455688888888888888
Q ss_pred cccccccc
Q 000594 650 AYQLCELP 657 (1402)
Q Consensus 650 ~~~l~~lp 657 (1402)
|. +..+|
T Consensus 159 N~-is~i~ 165 (873)
T KOG4194|consen 159 NL-ISEIP 165 (873)
T ss_pred ch-hhccc
Confidence 86 66655
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.85 E-value=3.1e-23 Score=241.50 Aligned_cols=371 Identities=23% Similarity=0.252 Sum_probs=213.0
Q ss_pred hccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccccc
Q 000594 565 LLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHH 644 (1402)
Q Consensus 565 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~ 644 (1402)
+..+.-+|++||+++|.+...|..+..+.+|+.|+++.|.|.++|.+++++.+|++|.|.+| .+..+|.++..+++|++
T Consensus 40 ~~~~~v~L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~lnL~~n-~l~~lP~~~~~lknl~~ 118 (1081)
T KOG0618|consen 40 FVEKRVKLKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYLNLKNN-RLQSLPASISELKNLQY 118 (1081)
T ss_pred HhhheeeeEEeeccccccccCCchhhhHHHHhhcccchhhHhhCchhhhhhhcchhheeccc-hhhcCchhHHhhhcccc
Confidence 33444459999999999999999999999999999999999999999999999999999987 78899999999999999
Q ss_pred ccccCcccccccccCcccccccccccceecCCCCCCChhccccccccCceEEEeCccCcCChhhhhhhcccCCCCCC-ee
Q 000594 645 LDIEGAYQLCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKLREKNDLE-VL 723 (1402)
Q Consensus 645 L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~-~L 723 (1402)
|++++|. ...+|.-+..++.+..+....+... ..+++.. .+.+ .+..+.+.+ .......+++ .|
T Consensus 119 LdlS~N~-f~~~Pl~i~~lt~~~~~~~s~N~~~--~~lg~~~-ik~~--~l~~n~l~~---------~~~~~i~~l~~~l 183 (1081)
T KOG0618|consen 119 LDLSFNH-FGPIPLVIEVLTAEEELAASNNEKI--QRLGQTS-IKKL--DLRLNVLGG---------SFLIDIYNLTHQL 183 (1081)
T ss_pred cccchhc-cCCCchhHHhhhHHHHHhhhcchhh--hhhcccc-chhh--hhhhhhccc---------chhcchhhhheee
Confidence 9999997 7788887777777766653322100 0111111 1111 111111100 0001111122 23
Q ss_pred EEEeecCCCCCCcChHHHHHHhhhc-C----------CCCCccEEEEEeeCCCCCCCCcCCCcccceeEEEEecCCCCCC
Q 000594 724 KLEWRARGDGDSVDEDREKNILDML-K----------PHCKIKRLEIHSYGGTRFPSWVGDSSFSKVAVLILRNCQRSTS 792 (1402)
Q Consensus 724 ~l~~~~~~~~~~~~~~~~~~~l~~l-~----------~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~ 792 (1402)
+++++.....+.. ....++.+ + .-++++.|+...|.....-. .....+|++++++.++....
T Consensus 184 dLr~N~~~~~dls----~~~~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~dis~n~l~~l 256 (1081)
T KOG0618|consen 184 DLRYNEMEVLDLS----NLANLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDV---HPVPLNLQYLDISHNNLSNL 256 (1081)
T ss_pred ecccchhhhhhhh----hccchhhhhhhhcccceEEecCcchheeeeccCcceeecc---ccccccceeeecchhhhhcc
Confidence 3333321100000 00001111 0 12334444444444332211 12346788888888875443
Q ss_pred CCCCCCcCCcCeeeecCCCCceeecccccCCCccccccccccccccCcccccccccccccccccccCcccceeecccccc
Q 000594 793 LPPLGQLCSLKDLTIGGMSALKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPK 872 (1402)
Q Consensus 793 l~~l~~l~~L~~L~L~~~~~~~~i~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~c~~ 872 (1402)
..+++.+++|+.|...+|.. ..++...+. ..+|+.|.+.++. ++.+... ...+.+|++|++..+ +
T Consensus 257 p~wi~~~~nle~l~~n~N~l-~~lp~ri~~------~~~L~~l~~~~ne-l~yip~~------le~~~sL~tLdL~~N-~ 321 (1081)
T KOG0618|consen 257 PEWIGACANLEALNANHNRL-VALPLRISR------ITSLVSLSAAYNE-LEYIPPF------LEGLKSLRTLDLQSN-N 321 (1081)
T ss_pred hHHHHhcccceEecccchhH-HhhHHHHhh------hhhHHHHHhhhhh-hhhCCCc------ccccceeeeeeehhc-c
Confidence 33478888888888877543 444444432 3455555554432 2222211 234666667776665 4
Q ss_pred ccCCCCCCCCCccEEEEeccCCccccCCCCCcceEEEEcCCCcccccCCCCCCCCCcccccccccccccccccccccceE
Q 000594 873 LSGRLPNHLPSLEEIVIAGCMHLAVSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSQKFQKVEHL 952 (1402)
Q Consensus 873 l~~~lp~~l~~L~~L~l~~~~~l~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~L~~L 952 (1402)
+. .+|..+- ..+. ..|..++.+.+.....
T Consensus 322 L~-~lp~~~l--~v~~--------------~~l~~ln~s~n~l~~l---------------------------------- 350 (1081)
T KOG0618|consen 322 LP-SLPDNFL--AVLN--------------ASLNTLNVSSNKLSTL---------------------------------- 350 (1081)
T ss_pred cc-ccchHHH--hhhh--------------HHHHHHhhhhcccccc----------------------------------
Confidence 42 4443110 0000 0011111111110000
Q ss_pred EEeccCCchhhhccCCCCcccccccCcceeEeecCCCcc-ccccccCCCCcceEEEecCCCccCCchhhhcCCCcchhhh
Q 000594 953 KIVGCEGFANEIRLGKPLQGLHSFTCLKDLHIGICPTLV-SLRNICFLSSLSEITIEHCNALTSLTDGMIHNNAQLKVLR 1031 (1402)
Q Consensus 953 ~i~~c~~l~~~~~~~~~~~~~~~l~~L~~L~L~~~~~l~-~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~ 1031 (1402)
+..+-..++.|+.|++.+|.... .+|.+.++.+||.|++++ |.+.++|...+.++..|++|+
T Consensus 351 ----------------p~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsy-NrL~~fpas~~~kle~LeeL~ 413 (1081)
T KOG0618|consen 351 ----------------PSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSY-NRLNSFPASKLRKLEELEELN 413 (1081)
T ss_pred ----------------ccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecc-cccccCCHHHHhchHHhHHHh
Confidence 00111346778888888886333 345677899999999999 889999998889999999999
Q ss_pred hccccCccccc
Q 000594 1032 IKGCHSLTSIA 1042 (1402)
Q Consensus 1032 L~~c~~l~~i~ 1042 (1402)
+|| ++++.+|
T Consensus 414 LSG-NkL~~Lp 423 (1081)
T KOG0618|consen 414 LSG-NKLTTLP 423 (1081)
T ss_pred ccc-chhhhhh
Confidence 999 4666665
No 13
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.84 E-value=4.8e-23 Score=227.55 Aligned_cols=176 Identities=17% Similarity=0.231 Sum_probs=132.3
Q ss_pred CCCcccEEEecccccc--cccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccc
Q 000594 568 KCKKLRVLSLGRYLIT--EVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHL 645 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L 645 (1402)
-++..|-.|+++|.++ .+|.++..+++++.|.|..+++..+|+.++.|.+|++|.+++|+ +..+-..++.|+.||.+
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~-L~~vhGELs~Lp~LRsv 83 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQ-LISVHGELSDLPRLRSV 83 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhh-hHhhhhhhccchhhHHH
Confidence 3556788899999876 67999999999999999999999999999999999999999984 56666778889999999
Q ss_pred cccCccc-ccccccCcccccccccccceecCCCCCCChhccccccccCceEEEeCccCcCChhhhhhhcccCCCCCCeeE
Q 000594 646 DIEGAYQ-LCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKLREKNDLEVLK 724 (1402)
Q Consensus 646 ~l~~~~~-l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~ 724 (1402)
.+..|+. -..+|..|.+|..|.+|++.. +.+
T Consensus 84 ~~R~N~LKnsGiP~diF~l~dLt~lDLSh------------------------NqL------------------------ 115 (1255)
T KOG0444|consen 84 IVRDNNLKNSGIPTDIFRLKDLTILDLSH------------------------NQL------------------------ 115 (1255)
T ss_pred hhhccccccCCCCchhcccccceeeecch------------------------hhh------------------------
Confidence 9988862 245788888887777775321 111
Q ss_pred EEeecCCCCCCcChHHHHHHhhhcCCCCCccEEEEEeeCCCCCCCCcCCCcccceeEEEEecCCCCCCCCC-CCCcCCcC
Q 000594 725 LEWRARGDGDSVDEDREKNILDMLKPHCKIKRLEIHSYGGTRFPSWVGDSSFSKVAVLILRNCQRSTSLPP-LGQLCSLK 803 (1402)
Q Consensus 725 l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~~~~l~~-l~~l~~L~ 803 (1402)
..++..|..-.++-.|+++.|.+.++|..++ -.++.|-.|+|++|+. +.+|+ ...+.+|+
T Consensus 116 -----------------~EvP~~LE~AKn~iVLNLS~N~IetIPn~lf-inLtDLLfLDLS~NrL-e~LPPQ~RRL~~Lq 176 (1255)
T KOG0444|consen 116 -----------------REVPTNLEYAKNSIVLNLSYNNIETIPNSLF-INLTDLLFLDLSNNRL-EMLPPQIRRLSMLQ 176 (1255)
T ss_pred -----------------hhcchhhhhhcCcEEEEcccCccccCCchHH-HhhHhHhhhccccchh-hhcCHHHHHHhhhh
Confidence 1223333444566677788888888887665 2567788888988884 44554 77788888
Q ss_pred eeeecCCC
Q 000594 804 DLTIGGMS 811 (1402)
Q Consensus 804 ~L~L~~~~ 811 (1402)
.|.|++|+
T Consensus 177 tL~Ls~NP 184 (1255)
T KOG0444|consen 177 TLKLSNNP 184 (1255)
T ss_pred hhhcCCCh
Confidence 88888765
No 14
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.82 E-value=2.4e-22 Score=222.10 Aligned_cols=272 Identities=19% Similarity=0.290 Sum_probs=142.3
Q ss_pred cccCcceeEeecCCCccccc-cccCCCCcceEEEecCCCccCCchhhhcCCCcchhhhhccccCcccccccCC-cCcccE
Q 000594 975 SFTCLKDLHIGICPTLVSLR-NICFLSSLSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIAREHL-PSSLKA 1052 (1402)
Q Consensus 975 ~l~~L~~L~L~~~~~l~~~~-~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~-~~~L~~ 1052 (1402)
.+..|..|++++|. ++..| .+....++-.|+|++ |++.+||...|.+++-|-.||+|+| .+..+|+..- ..+|+.
T Consensus 101 ~l~dLt~lDLShNq-L~EvP~~LE~AKn~iVLNLS~-N~IetIPn~lfinLtDLLfLDLS~N-rLe~LPPQ~RRL~~Lqt 177 (1255)
T KOG0444|consen 101 RLKDLTILDLSHNQ-LREVPTNLEYAKNSIVLNLSY-NNIETIPNSLFINLTDLLFLDLSNN-RLEMLPPQIRRLSMLQT 177 (1255)
T ss_pred ccccceeeecchhh-hhhcchhhhhhcCcEEEEccc-CccccCCchHHHhhHhHhhhccccc-hhhhcCHHHHHHhhhhh
Confidence 34455556666653 22222 344566677777777 7778888777778888888888773 4555442111 122333
Q ss_pred EEeccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCccccccc
Q 000594 1053 IEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSE 1132 (1402)
Q Consensus 1053 L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~ 1132 (1402)
|.+++++ |.+..+...|+
T Consensus 178 L~Ls~NP--------------------------------L~hfQLrQLPs------------------------------ 195 (1255)
T KOG0444|consen 178 LKLSNNP--------------------------------LNHFQLRQLPS------------------------------ 195 (1255)
T ss_pred hhcCCCh--------------------------------hhHHHHhcCcc------------------------------
Confidence 3333222 22222222222
Q ss_pred ccCcccccEEEEeec-CcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCccc
Q 000594 1133 CQLPVAVEELTIISC-SNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLV 1211 (1402)
Q Consensus 1133 ~~~l~~L~~L~L~~~-~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~ 1211 (1402)
+++|++|++++. .-+..+|..+..+.+|..+++|. +++..+|+.+-++++|+.|+|++ +.++.+...
T Consensus 196 ---mtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~-N~Lp~vPecly~l~~LrrLNLS~-N~iteL~~~------- 263 (1255)
T KOG0444|consen 196 ---MTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSE-NNLPIVPECLYKLRNLRRLNLSG-NKITELNMT------- 263 (1255)
T ss_pred ---chhhhhhhcccccchhhcCCCchhhhhhhhhccccc-cCCCcchHHHhhhhhhheeccCc-Cceeeeecc-------
Confidence 334444444442 23344555666666777777765 45677777777777777777777 455554321
Q ss_pred ceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCC-CCCCCCceeEeccCCCC-ccccccccCCcCccceeeecCC
Q 000594 1212 GVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEE-GLSTNLTSVGISGDNIY-KPLVKWGFHKLTSLRELSIHGC 1289 (1402)
Q Consensus 1212 ~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~-~~~~~L~~L~l~~~~~~-~~~~~~~l~~l~~L~~L~l~~c 1289 (1402)
......|++|+++.| +++.+|.. ..++.|+.|.+.+|+.. ..+|+ .++.+.+|+.+...+
T Consensus 264 ---------------~~~W~~lEtLNlSrN-QLt~LP~avcKL~kL~kLy~n~NkL~FeGiPS-GIGKL~~Levf~aan- 325 (1255)
T KOG0444|consen 264 ---------------EGEWENLETLNLSRN-QLTVLPDAVCKLTKLTKLYANNNKLTFEGIPS-GIGKLIQLEVFHAAN- 325 (1255)
T ss_pred ---------------HHHHhhhhhhccccc-hhccchHHHhhhHHHHHHHhccCcccccCCcc-chhhhhhhHHHHhhc-
Confidence 133455666666665 45666654 23555555555555554 22333 566666666666665
Q ss_pred CCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCC
Q 000594 1290 SDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTS 1346 (1402)
Q Consensus 1290 ~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~ 1346 (1402)
+.++-.|++. -.+..|+.|.|.. |.|-.+| .++.-|+-|+.|++...|+|--
T Consensus 326 N~LElVPEgl---cRC~kL~kL~L~~-NrLiTLP-eaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 326 NKLELVPEGL---CRCVKLQKLKLDH-NRLITLP-EAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred cccccCchhh---hhhHHHHHhcccc-cceeech-hhhhhcCCcceeeccCCcCccC
Confidence 3444444411 1233344443333 3344444 3344445555555555444433
No 15
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.60 E-value=3e-17 Score=173.88 Aligned_cols=116 Identities=19% Similarity=0.179 Sum_probs=94.6
Q ss_pred hhhhhhhccCCCcccEEEecccccccc-cccccccccccceeccC-ccccccchh-hhcCCCCcEEecCCccccccCchh
Q 000594 559 PMVLSDLLPKCKKLRVLSLGRYLITEV-PVSIGCLKHLRYLNFSN-SWIQCLPEV-ITSLFNLEILILSNCWFLLKLPSS 635 (1402)
Q Consensus 559 ~~~~~~~~~~l~~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~-~~i~~lp~~-i~~L~~L~~LdLs~~~~~~~lP~~ 635 (1402)
..+++.+|+.+++||.|||++|.|+.| |++|..+..|-.|-+-+ |+|+.+|+. |++|..||.|.+.-|...-.....
T Consensus 80 ~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~a 159 (498)
T KOG4237|consen 80 SSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDA 159 (498)
T ss_pred ccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHH
Confidence 356778899999999999999999988 88899998888877766 889999854 899999999999888666666677
Q ss_pred hhcccccccccccCccccccccc-CcccccccccccceecC
Q 000594 636 IGNLVNLHHLDIEGAYQLCELPL-GMKELKCLRTLTNFIVG 675 (1402)
Q Consensus 636 i~~L~~L~~L~l~~~~~l~~lp~-~i~~L~~L~~L~~~~~~ 675 (1402)
|..|++|+.|.+..|. +..++. .+..+.+++++..-...
T Consensus 160 l~dL~~l~lLslyDn~-~q~i~~~tf~~l~~i~tlhlA~np 199 (498)
T KOG4237|consen 160 LRDLPSLSLLSLYDNK-IQSICKGTFQGLAAIKTLHLAQNP 199 (498)
T ss_pred HHHhhhcchhcccchh-hhhhccccccchhccchHhhhcCc
Confidence 8899999999998887 777886 48888888888654333
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.53 E-value=6e-14 Score=171.79 Aligned_cols=256 Identities=30% Similarity=0.411 Sum_probs=137.2
Q ss_pred cceeEeecCCCccccccccCCCCcceEEEecCCCccCCchhhhcCCCcchhhhhccccCcccccccCCcCcccEEEeccC
Q 000594 979 LKDLHIGICPTLVSLRNICFLSSLSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIAREHLPSSLKAIEVEDC 1058 (1402)
Q Consensus 979 L~~L~L~~~~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~L~~L~l~~c 1058 (1402)
-..|+++++ .++.+|. ...++|+.|++.+ |+++.+|.. +++|++|++++| .++.+|. .+++|+.|++++|
T Consensus 203 ~~~LdLs~~-~LtsLP~-~l~~~L~~L~L~~-N~Lt~LP~l----p~~Lk~LdLs~N-~LtsLP~--lp~sL~~L~Ls~N 272 (788)
T PRK15387 203 NAVLNVGES-GLTTLPD-CLPAHITTLVIPD-NNLTSLPAL----PPELRTLEVSGN-QLTSLPV--LPPGLLELSIFSN 272 (788)
T ss_pred CcEEEcCCC-CCCcCCc-chhcCCCEEEccC-CcCCCCCCC----CCCCcEEEecCC-ccCcccC--cccccceeeccCC
Confidence 445666666 3444444 1234566666666 566666542 356666666653 4555542 3344555444433
Q ss_pred CCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCcccccccccCccc
Q 000594 1059 KTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVA 1138 (1402)
Q Consensus 1059 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~ 1138 (1402)
. ++.++ .+|++|+.|++++| .++.+|. .+++
T Consensus 273 ~-------------------------------------------L~~Lp--~lp~~L~~L~Ls~N-~Lt~LP~---~p~~ 303 (788)
T PRK15387 273 P-------------------------------------------LTHLP--ALPSGLCKLWIFGN-QLTSLPV---LPPG 303 (788)
T ss_pred c-------------------------------------------hhhhh--hchhhcCEEECcCC-ccccccc---cccc
Confidence 2 22222 13345666666666 3444443 2345
Q ss_pred ccEEEEeecCcccccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccc
Q 000594 1139 VEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENC 1218 (1402)
Q Consensus 1139 L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c 1218 (1402)
|+.|++++|. +..+|... .+|+.|++++| .++.+|.. .++|+.|++++ +.++.+|. .
T Consensus 304 L~~LdLS~N~-L~~Lp~lp---~~L~~L~Ls~N-~L~~LP~l---p~~Lq~LdLS~-N~Ls~LP~--l------------ 360 (788)
T PRK15387 304 LQELSVSDNQ-LASLPALP---SELCKLWAYNN-QLTSLPTL---PSGLQELSVSD-NQLASLPT--L------------ 360 (788)
T ss_pred cceeECCCCc-cccCCCCc---ccccccccccC-cccccccc---ccccceEecCC-CccCCCCC--C------------
Confidence 6666666653 23333211 34555556553 33444431 13566666665 44555542 1
Q ss_pred cccCCCCCCCCCCCccEEEeccCCCccccCCCCCCCCCceeEeccCCCCccccccccCCcCccceeeecCCCCccccccc
Q 000594 1219 DKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEEGLSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEV 1298 (1402)
Q Consensus 1219 ~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~ 1298 (1402)
.++|+.|++++| .+..+|. .+.+|+.|++++|.+.. ++. ..++|+.|++++|. +.++|.
T Consensus 361 -----------p~~L~~L~Ls~N-~L~~LP~--l~~~L~~LdLs~N~Lt~-LP~----l~s~L~~LdLS~N~-LssIP~- 419 (788)
T PRK15387 361 -----------PSELYKLWAYNN-RLTSLPA--LPSGLKELIVSGNRLTS-LPV----LPSELKELMVSGNR-LTSLPM- 419 (788)
T ss_pred -----------Ccccceehhhcc-ccccCcc--cccccceEEecCCcccC-CCC----cccCCCEEEccCCc-CCCCCc-
Confidence 234555555554 3444443 23566777776665442 322 13567778888753 566664
Q ss_pred ccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCC
Q 000594 1299 EKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFT 1345 (1402)
Q Consensus 1299 ~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~ 1345 (1402)
.+.+|+.|++++ |+|+.+| ..+.++++|+.|+++++ .++
T Consensus 420 -----l~~~L~~L~Ls~-NqLt~LP-~sl~~L~~L~~LdLs~N-~Ls 458 (788)
T PRK15387 420 -----LPSGLLSLSVYR-NQLTRLP-ESLIHLSSETTVNLEGN-PLS 458 (788)
T ss_pred -----chhhhhhhhhcc-CcccccC-hHHhhccCCCeEECCCC-CCC
Confidence 456777788877 6677787 45777888888888884 444
No 17
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.46 E-value=3.9e-13 Score=164.73 Aligned_cols=234 Identities=29% Similarity=0.393 Sum_probs=177.7
Q ss_pred cccceeeccCCCCccccCCCccccccccccccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecC
Q 000594 1091 DLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISN 1170 (1402)
Q Consensus 1091 ~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~ 1170 (1402)
+|+.|.+.+ .+++.+|. .|++|++|++++| .++.+|.. +++|+.|++++|. +..+|... .+|+.|++++
T Consensus 223 ~L~~L~L~~-N~Lt~LP~--lp~~Lk~LdLs~N-~LtsLP~l---p~sL~~L~Ls~N~-L~~Lp~lp---~~L~~L~Ls~ 291 (788)
T PRK15387 223 HITTLVIPD-NNLTSLPA--LPPELRTLEVSGN-QLTSLPVL---PPGLLELSIFSNP-LTHLPALP---SGLCKLWIFG 291 (788)
T ss_pred CCCEEEccC-CcCCCCCC--CCCCCcEEEecCC-ccCcccCc---ccccceeeccCCc-hhhhhhch---hhcCEEECcC
Confidence 477787776 45666663 5679999999998 66677743 4689999999986 45666532 6789999999
Q ss_pred CCCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCC
Q 000594 1171 CENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEE 1250 (1402)
Q Consensus 1171 c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~ 1250 (1402)
| .++.+|.. .++|+.|++++ +.++.+|. .+.+|+.|++++|..-. +| ....+|+.|+|++| .++.+|.
T Consensus 292 N-~Lt~LP~~---p~~L~~LdLS~-N~L~~Lp~--lp~~L~~L~Ls~N~L~~--LP-~lp~~Lq~LdLS~N-~Ls~LP~- 359 (788)
T PRK15387 292 N-QLTSLPVL---PPGLQELSVSD-NQLASLPA--LPSELCKLWAYNNQLTS--LP-TLPSGLQELSVSDN-QLASLPT- 359 (788)
T ss_pred C-cccccccc---ccccceeECCC-CccccCCC--CcccccccccccCcccc--cc-ccccccceEecCCC-ccCCCCC-
Confidence 6 57777753 47899999998 57888875 56789999998865433 22 12358999999987 5777775
Q ss_pred CCCCCCceeEeccCCCCccccccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCC
Q 000594 1251 GLSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYL 1330 (1402)
Q Consensus 1251 ~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l 1330 (1402)
.+.+|+.|++++|.+. .++. ..++|+.|++++| .+..+|. .+++|+.|++++ +.|..+|. ..
T Consensus 360 -lp~~L~~L~Ls~N~L~-~LP~----l~~~L~~LdLs~N-~Lt~LP~------l~s~L~~LdLS~-N~LssIP~----l~ 421 (788)
T PRK15387 360 -LPSELYKLWAYNNRLT-SLPA----LPSGLKELIVSGN-RLTSLPV------LPSELKELMVSG-NRLTSLPM----LP 421 (788)
T ss_pred -CCcccceehhhccccc-cCcc----cccccceEEecCC-cccCCCC------cccCCCEEEccC-CcCCCCCc----ch
Confidence 4678999999988765 3443 2368999999996 5777875 568899999999 67888873 13
Q ss_pred CCCCeeeccCCCCCCCCCCCC-CccccccccccCCcc
Q 000594 1331 VSLEHLRVISCPNFTSFPEAG-FPSSLLSLEIRGCPL 1366 (1402)
Q Consensus 1331 ~~L~~L~l~~c~~l~~lp~~~-~~~sL~~L~i~~cp~ 1366 (1402)
.+|+.|++++ ++++.+|... .+++|+.|++++||.
T Consensus 422 ~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 422 SGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred hhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCC
Confidence 5789999999 7899999752 378999999999974
No 18
>PRK04841 transcriptional regulator MalT; Provisional
Probab=99.36 E-value=8.2e-11 Score=157.23 Aligned_cols=294 Identities=13% Similarity=0.177 Sum_probs=181.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeC-CCCCHHHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS-HDFDVLRISKAI 231 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i 231 (1402)
.+.+|-|..-.+++ ... ...+++.|+|++|.||||++..+..+ ++.++|+++. ...+...+...+
T Consensus 13 ~~~~~~R~rl~~~l----~~~-----~~~~~~~v~apaG~GKTtl~~~~~~~-----~~~~~w~~l~~~d~~~~~f~~~l 78 (903)
T PRK04841 13 LHNTVVRERLLAKL----SGA-----NNYRLVLVTSPAGYGKTTLISQWAAG-----KNNLGWYSLDESDNQPERFASYL 78 (903)
T ss_pred ccccCcchHHHHHH----hcc-----cCCCeEEEECCCCCCHHHHHHHHHHh-----CCCeEEEecCcccCCHHHHHHHH
Confidence 34566666555444 221 34579999999999999999997753 3368999996 445666777777
Q ss_pred HHHhcCCCCC-------------cCchHHHHHHHHHHhc--CCeEEEEEeCCCcCChhhHHHhhccc-CCCCCCcEEEEE
Q 000594 232 LESITLSPCD-------------LKDLNSVQLKLKEAVF--KKKFLIVLDDVWSERYDLWQALKSPF-MAGAPGSRIIVT 295 (1402)
Q Consensus 232 ~~~~~~~~~~-------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~~~~~l-~~~~~gs~iivT 295 (1402)
+..+...... ..+.......+-..+. +.+++|||||+...+..........+ .....+.++|||
T Consensus 79 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~~~~~~~~l~~l~~~~~~~~~lv~~ 158 (903)
T PRK04841 79 IAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLITNPEIHEAMRFFLRHQPENLTLVVL 158 (903)
T ss_pred HHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCCChHHHHHHHHHHHhCCCCeEEEEE
Confidence 7777422111 0122223333333332 68999999999665433333333333 333456788899
Q ss_pred ccchhhh---hhcCCCcceeeccc--CCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcC
Q 000594 296 TRSMDVA---STMGSGKNYELELK--LLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRS 370 (1402)
Q Consensus 296 tR~~~v~---~~~~~~~~~~~~l~--~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~ 370 (1402)
||...-. ..........+... +|+.+|+.++|....... - -.+...+|.+.|+|.|+++..++..++.
T Consensus 159 sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~~---~----~~~~~~~l~~~t~Gwp~~l~l~~~~~~~ 231 (903)
T PRK04841 159 SRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSSP---I----EAAESSRLCDDVEGWATALQLIALSARQ 231 (903)
T ss_pred eCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCCC---C----CHHHHHHHHHHhCChHHHHHHHHHHHhh
Confidence 9984211 11111223333333 899999999997654211 1 1456678999999999999999887754
Q ss_pred CCChhHHHHHhhhhcccCC--CCCChhHHHHH-HhccCcHHHHHHHhHhccCCCCccccHHHHHHHHHHhcCccccCCch
Q 000594 371 KERVDEWRTILDSKIWNLQ--DKTEIPSVLKL-SYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSK 447 (1402)
Q Consensus 371 ~~~~~~w~~~~~~~~~~~~--~~~~i~~~l~~-sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~ 447 (1402)
..... .... +... +...+...+.- -|+.||++.+..+...|+++ .++.+ +. ..+...
T Consensus 232 ~~~~~--~~~~----~~~~~~~~~~~~~~l~~~v~~~l~~~~~~~l~~~a~~~---~~~~~-l~-----~~l~~~----- 291 (903)
T PRK04841 232 NNSSL--HDSA----RRLAGINASHLSDYLVEEVLDNVDLETRHFLLRCSVLR---SMNDA-LI-----VRVTGE----- 291 (903)
T ss_pred CCCch--hhhh----HhhcCCCchhHHHHHHHHHHhcCCHHHHHHHHHhcccc---cCCHH-HH-----HHHcCC-----
Confidence 42210 0101 1111 12245555443 48999999999999999996 33433 22 222211
Q ss_pred hHHHHHHHHHHHHHhCccccc-cCCCCCcEEEchhHHHHHHHhh
Q 000594 448 ELEDWGSKYFHDLLSRSMFQK-SSNSESKYVMHDLVHDLAQWAS 490 (1402)
Q Consensus 448 ~~~~~~~~~~~~L~~r~l~~~-~~~~~~~~~mHdlv~~~~~~~~ 490 (1402)
+.+...+++|.++++|.. .+.+...|+.|++++++.....
T Consensus 292 ---~~~~~~L~~l~~~~l~~~~~~~~~~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 292 ---ENGQMRLEELERQGLFIQRMDDSGEWFRYHPLFASFLRHRC 332 (903)
T ss_pred ---CcHHHHHHHHHHCCCeeEeecCCCCEEehhHHHHHHHHHHH
Confidence 114577999999999753 3334457999999999998765
No 19
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.35 E-value=1.6e-12 Score=160.84 Aligned_cols=243 Identities=21% Similarity=0.318 Sum_probs=169.5
Q ss_pred ccceeeccCCCCccccCCCccccccccccccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEeecCC
Q 000594 1092 LESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNC 1171 (1402)
Q Consensus 1092 L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c 1171 (1402)
...|++++. +++.+|. .+|++|+.|++++| .++.+|..+. ++|++|++++|. +..+|..+. .+|+.|++++|
T Consensus 180 ~~~L~L~~~-~LtsLP~-~Ip~~L~~L~Ls~N-~LtsLP~~l~--~nL~~L~Ls~N~-LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 180 KTELRLKIL-GLTTIPA-CIPEQITTLILDNN-ELKSLPENLQ--GNIKTLYANSNQ-LTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred ceEEEeCCC-CcCcCCc-ccccCCcEEEecCC-CCCcCChhhc--cCCCEEECCCCc-cccCChhhh--ccccEEECcCC
Confidence 445666553 4555553 35678999999887 5667776543 589999998875 556776543 57899999886
Q ss_pred CCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCccccCCCC
Q 000594 1172 ENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEEG 1251 (1402)
Q Consensus 1172 ~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~l~~~~ 1251 (1402)
. ++.+|..+. ++|+.|++++ +.++.+|.. ++.+|+.|++++|. ++. ++..-.++|+.|++++| .+..+|. .
T Consensus 252 ~-L~~LP~~l~--s~L~~L~Ls~-N~L~~LP~~-l~~sL~~L~Ls~N~-Lt~-LP~~lp~sL~~L~Ls~N-~Lt~LP~-~ 322 (754)
T PRK15370 252 R-ITELPERLP--SALQSLDLFH-NKISCLPEN-LPEELRYLSVYDNS-IRT-LPAHLPSGITHLNVQSN-SLTALPE-T 322 (754)
T ss_pred c-cCcCChhHh--CCCCEEECcC-CccCccccc-cCCCCcEEECCCCc-ccc-CcccchhhHHHHHhcCC-ccccCCc-c
Confidence 5 567776654 5789999985 678888753 45689999998874 333 33223357888999887 4556664 3
Q ss_pred CCCCCceeEeccCCCCccccccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCC
Q 000594 1252 LSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLV 1331 (1402)
Q Consensus 1252 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~ 1331 (1402)
.+++|+.|++++|.... ++. .+ .++|+.|++++| .+..+|. ..+++|+.|++++ ++|..+|.. +. .
T Consensus 323 l~~sL~~L~Ls~N~Lt~-LP~-~l--~~sL~~L~Ls~N-~L~~LP~-----~lp~~L~~LdLs~-N~Lt~LP~~-l~--~ 388 (754)
T PRK15370 323 LPPGLKTLEAGENALTS-LPA-SL--PPELQVLDVSKN-QITVLPE-----TLPPTITTLDVSR-NALTNLPEN-LP--A 388 (754)
T ss_pred ccccceeccccCCcccc-CCh-hh--cCcccEEECCCC-CCCcCCh-----hhcCCcCEEECCC-CcCCCCCHh-HH--H
Confidence 45789999998887553 443 22 368999999987 4666775 2467899999998 467788743 33 4
Q ss_pred CCCeeeccCCCCCCCCCCCC-----CccccccccccCCcc
Q 000594 1332 SLEHLRVISCPNFTSFPEAG-----FPSSLLSLEIRGCPL 1366 (1402)
Q Consensus 1332 ~L~~L~l~~c~~l~~lp~~~-----~~~sL~~L~i~~cp~ 1366 (1402)
+|+.|++++ ++++.+|... ..+.+..|++.++|.
T Consensus 389 sL~~LdLs~-N~L~~LP~sl~~~~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 389 ALQIMQASR-NNLVRLPESLPHFRGEGPQPTRIIVEYNPF 427 (754)
T ss_pred HHHHHhhcc-CCcccCchhHHHHhhcCCCccEEEeeCCCc
Confidence 788999998 6788887531 136778888888875
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.34 E-value=1.5e-12 Score=163.68 Aligned_cols=124 Identities=33% Similarity=0.376 Sum_probs=95.2
Q ss_pred CCCcccEEEecccc--ccccccc-ccccccccceeccCcc-ccccchhhhcCCCCcEEecCCccccccCchhhhcccccc
Q 000594 568 KCKKLRVLSLGRYL--ITEVPVS-IGCLKHLRYLNFSNSW-IQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLH 643 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~--i~~lp~~-i~~l~~Lr~L~Ls~~~-i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~ 643 (1402)
.++.|++|-+.+|. +..++.. |..+++||+|||++|. +.+||++|++|.+||||+++++ .+..+|.++++|++|.
T Consensus 543 ~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t-~I~~LP~~l~~Lk~L~ 621 (889)
T KOG4658|consen 543 ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDT-GISHLPSGLGNLKKLI 621 (889)
T ss_pred CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCC-CccccchHHHHHHhhh
Confidence 34479999998886 6666544 7789999999999664 7899999999999999999998 5778999999999999
Q ss_pred cccccCcccccccccCcccccccccccceecC-CCCCCChhccccccccC
Q 000594 644 HLDIEGAYQLCELPLGMKELKCLRTLTNFIVG-KDSGCALGELKNWKFLR 692 (1402)
Q Consensus 644 ~L~l~~~~~l~~lp~~i~~L~~L~~L~~~~~~-~~~~~~~~~L~~L~~L~ 692 (1402)
||++..+..+..+|..+..|.+||+|..+... ..+...++++.+|+.|+
T Consensus 622 ~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~ 671 (889)
T KOG4658|consen 622 YLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLE 671 (889)
T ss_pred eeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchh
Confidence 99999888666776666679999999876554 22334455555555444
No 21
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.30 E-value=5.6e-12 Score=156.11 Aligned_cols=245 Identities=20% Similarity=0.290 Sum_probs=123.3
Q ss_pred CCCcceEEEecCCCccCCchhhhcCCCcchhhhhccccCcccccccCCcCcccEEEeccCCCcccccccCCCcCCccchh
Q 000594 999 LSSLSEITIEHCNALTSLTDGMIHNNAQLKVLRIKGCHSLTSIAREHLPSSLKAIEVEDCKTLQSVLDDRENSCTSSSVL 1078 (1402)
Q Consensus 999 l~~L~~L~l~~c~~l~~l~~~~~~~l~~L~~L~L~~c~~l~~i~~~~~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~~~~ 1078 (1402)
..+...|++++ ..++.+|.. + .++|+.|++++| .++.+|.. .+++|++|++++|.
T Consensus 177 ~~~~~~L~L~~-~~LtsLP~~-I--p~~L~~L~Ls~N-~LtsLP~~-l~~nL~~L~Ls~N~------------------- 231 (754)
T PRK15370 177 KNNKTELRLKI-LGLTTIPAC-I--PEQITTLILDNN-ELKSLPEN-LQGNIKTLYANSNQ------------------- 231 (754)
T ss_pred ccCceEEEeCC-CCcCcCCcc-c--ccCCcEEEecCC-CCCcCChh-hccCCCEEECCCCc-------------------
Confidence 34567788887 577777764 2 246777777764 55565532 23455555555432
Q ss_pred hcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCcccccccccCcccccEEEEeecCcccccccccC
Q 000594 1079 EKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFH 1158 (1402)
Q Consensus 1079 ~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~ 1158 (1402)
++.+|. .+|++|+.|++++|. +..+|..+. .+|+.|++++|. +..+|..+.
T Consensus 232 ------------------------LtsLP~-~l~~~L~~L~Ls~N~-L~~LP~~l~--s~L~~L~Ls~N~-L~~LP~~l~ 282 (754)
T PRK15370 232 ------------------------LTSIPA-TLPDTIQEMELSINR-ITELPERLP--SALQSLDLFHNK-ISCLPENLP 282 (754)
T ss_pred ------------------------cccCCh-hhhccccEEECcCCc-cCcCChhHh--CCCCEEECcCCc-cCccccccC
Confidence 121221 233466677776663 334444332 355666665442 334444332
Q ss_pred CcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccccccCCCCCCCCCCCccEEEe
Q 000594 1159 DDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFL 1238 (1402)
Q Consensus 1159 ~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l 1238 (1402)
++|+.|++++| .++.+|..+. ++|+.|++++ +.++.+|. .-.++|+.|++
T Consensus 283 --~sL~~L~Ls~N-~Lt~LP~~lp--~sL~~L~Ls~-N~Lt~LP~------------------------~l~~sL~~L~L 332 (754)
T PRK15370 283 --EELRYLSVYDN-SIRTLPAHLP--SGITHLNVQS-NSLTALPE------------------------TLPPGLKTLEA 332 (754)
T ss_pred --CCCcEEECCCC-ccccCcccch--hhHHHHHhcC-CccccCCc------------------------cccccceeccc
Confidence 35555555553 3444443322 3455555554 23444432 22345555555
Q ss_pred ccCCCccccCCCCCCCCCceeEeccCCCCccccccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCC
Q 000594 1239 KKCPGIVFFPEEGLSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPK 1318 (1402)
Q Consensus 1239 ~~c~~l~~l~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~ 1318 (1402)
++|. ++.+|. .++++|+.|++++|++. .++. .+ .++|++|+|++| .+..+|+. .+.+|+.|++++ ++
T Consensus 333 s~N~-Lt~LP~-~l~~sL~~L~Ls~N~L~-~LP~-~l--p~~L~~LdLs~N-~Lt~LP~~-----l~~sL~~LdLs~-N~ 399 (754)
T PRK15370 333 GENA-LTSLPA-SLPPELQVLDVSKNQIT-VLPE-TL--PPTITTLDVSRN-ALTNLPEN-----LPAALQIMQASR-NN 399 (754)
T ss_pred cCCc-cccCCh-hhcCcccEEECCCCCCC-cCCh-hh--cCCcCEEECCCC-cCCCCCHh-----HHHHHHHHhhcc-CC
Confidence 5552 444443 33456666666665543 2222 11 245666666665 34455541 234566666666 45
Q ss_pred cccCCcc---ccCCCCCCCeeeccC
Q 000594 1319 LERLSSK---GFQYLVSLEHLRVIS 1340 (1402)
Q Consensus 1319 L~~l~~~---~l~~l~~L~~L~l~~ 1340 (1402)
|..+|.. .+..++.+..|++.+
T Consensus 400 L~~LP~sl~~~~~~~~~l~~L~L~~ 424 (754)
T PRK15370 400 LVRLPESLPHFRGEGPQPTRIIVEY 424 (754)
T ss_pred cccCchhHHHHhhcCCCccEEEeeC
Confidence 5555521 112345666777766
No 22
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.27 E-value=2.5e-13 Score=127.23 Aligned_cols=113 Identities=28% Similarity=0.316 Sum_probs=102.1
Q ss_pred hhhhhhhccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCcccc-ccCchhhh
Q 000594 559 PMVLSDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFL-LKLPSSIG 637 (1402)
Q Consensus 559 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~-~~lP~~i~ 637 (1402)
..+.+.-+..+++|++|++++|+|+++|.+++.++.||.|++.-|.+..+|.+||.++-|++|||++|+.. ..+|..|.
T Consensus 45 l~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldltynnl~e~~lpgnff 124 (264)
T KOG0617|consen 45 LTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDLTYNNLNENSLPGNFF 124 (264)
T ss_pred eeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhccccccccccCCcchh
Confidence 34455567889999999999999999999999999999999999999999999999999999999998654 46899999
Q ss_pred cccccccccccCcccccccccCcccccccccccce
Q 000594 638 NLVNLHHLDIEGAYQLCELPLGMKELKCLRTLTNF 672 (1402)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~~~ 672 (1402)
.|+.|+.|++++|. ...+|.++++|++||.|...
T Consensus 125 ~m~tlralyl~dnd-fe~lp~dvg~lt~lqil~lr 158 (264)
T KOG0617|consen 125 YMTTLRALYLGDND-FEILPPDVGKLTNLQILSLR 158 (264)
T ss_pred HHHHHHHHHhcCCC-cccCChhhhhhcceeEEeec
Confidence 99999999999998 88999999999999999653
No 23
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.25 E-value=2.5e-13 Score=127.27 Aligned_cols=102 Identities=33% Similarity=0.372 Sum_probs=88.8
Q ss_pred CCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccc
Q 000594 568 KCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDI 647 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l 647 (1402)
.+..+..|.|++|.++.+|+.|..+.+|++|++++|+|+++|.+|+.|++|+.|+++-| .+..+|.+|+.++-|+.||+
T Consensus 31 ~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmn-rl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMN-RLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred chhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchh-hhhcCccccCCCchhhhhhc
Confidence 56677888999999999999999999999999999999999999999999999999988 57889999999999999999
Q ss_pred cCcccc-cccccCccccccccccc
Q 000594 648 EGAYQL-CELPLGMKELKCLRTLT 670 (1402)
Q Consensus 648 ~~~~~l-~~lp~~i~~L~~L~~L~ 670 (1402)
.+|+.- ..+|..|..|+.|+-|.
T Consensus 110 tynnl~e~~lpgnff~m~tlraly 133 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALY 133 (264)
T ss_pred cccccccccCCcchhHHHHHHHHH
Confidence 988732 35677777777777664
No 24
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.22 E-value=2.3e-09 Score=127.81 Aligned_cols=302 Identities=15% Similarity=0.099 Sum_probs=173.8
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHHHHHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.++.++||++++++|...+...-.. .....+.|+|++|+|||++++.++++..... .-..+++.+....+...++..
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~~~--~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~~~ 105 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPALRG--SRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIFSE 105 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHhCC--CCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHHHH
Confidence 3467999999999999998543211 2334578999999999999999998642211 223456666666778889999
Q ss_pred HHHHhcCCC--CCcCchHHHHHHHHHHhc--CCeEEEEEeCCCcCC----hhhHHHhhcccCCCCCCcE--EEEEccchh
Q 000594 231 ILESITLSP--CDLKDLNSVQLKLKEAVF--KKKFLIVLDDVWSER----YDLWQALKSPFMAGAPGSR--IIVTTRSMD 300 (1402)
Q Consensus 231 i~~~~~~~~--~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~----~~~~~~~~~~l~~~~~gs~--iivTtR~~~ 300 (1402)
+++++.... ....+..+....+.+.+. +++.+||||+++.-. .+.+..+...+.. ..+++ ||.++....
T Consensus 106 i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~~~~~l~~l~~~~~~-~~~~~v~vI~i~~~~~ 184 (394)
T PRK00411 106 IARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKEGNDVLYSLLRAHEE-YPGARIGVIGISSDLT 184 (394)
T ss_pred HHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccCCchHHHHHHHhhhc-cCCCeEEEEEEECCcc
Confidence 999987522 122345666666766664 567899999996521 1233333332222 23333 566665544
Q ss_pred hhhhcCC-----CcceeecccCCChhhHHHHHHHhhcCCC--CCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh--c--
Q 000594 301 VASTMGS-----GKNYELELKLLSDDDRWSVFVNHAFEGR--DAGTHGNFESARQRVVEKCKGLPLAARALGGLL--R-- 369 (1402)
Q Consensus 301 v~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a~~~~--~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l--~-- 369 (1402)
+...... .....+.+++++.++..+++..++-... ....+..++.+++......|..+.|+.++-... .
T Consensus 185 ~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~ 264 (394)
T PRK00411 185 FLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYPGVVDDEVLDLIADLTAREHGDARVAIDLLRRAGLIAER 264 (394)
T ss_pred hhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhcccCCCCHhHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHH
Confidence 3332211 1123456999999999999988763221 111111223333333333455777777664332 1
Q ss_pred CC---CChhHHHHHhhhhcccCCCCCChhHHHHHHhccCcHHHHHHHhHhccCCC--CccccHHHHHHH--HHHhcCccc
Q 000594 370 SK---ERVDEWRTILDSKIWNLQDKTEIPSVLKLSYHHLPSHLKRCFAYCAILPK--DYEFKEEELVLL--WIAEGLIQQ 442 (1402)
Q Consensus 370 ~~---~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp~--~~~i~~~~li~~--w~a~g~i~~ 442 (1402)
.. -+.+.+..+.+.. -.....-.+..||.+.|..+..++..-+ ...+...++... .+++.+-..
T Consensus 265 ~~~~~I~~~~v~~a~~~~---------~~~~~~~~~~~L~~~~k~~L~ai~~~~~~~~~~~~~~~i~~~y~~l~~~~~~~ 335 (394)
T PRK00411 265 EGSRKVTEEDVRKAYEKS---------EIVHLSEVLRTLPLHEKLLLRAIVRLLKKGGDEVTTGEVYEEYKELCEELGYE 335 (394)
T ss_pred cCCCCcCHHHHHHHHHHH---------HHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHcCCC
Confidence 11 1344555554432 1233456789999998887766553321 133555555432 333322111
Q ss_pred cCCchhHHHHHHHHHHHHHhCcccccc
Q 000594 443 SEDSKELEDWGSKYFHDLLSRSMFQKS 469 (1402)
Q Consensus 443 ~~~~~~~~~~~~~~~~~L~~r~l~~~~ 469 (1402)
+.+ ......|+.+|...++|...
T Consensus 336 ~~~----~~~~~~~l~~L~~~glI~~~ 358 (394)
T PRK00411 336 PRT----HTRFYEYINKLDMLGIINTR 358 (394)
T ss_pred cCc----HHHHHHHHHHHHhcCCeEEE
Confidence 111 12345688999999998753
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.15 E-value=6.9e-13 Score=141.29 Aligned_cols=102 Identities=26% Similarity=0.337 Sum_probs=69.5
Q ss_pred ccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCCCCCCC
Q 000594 1272 KWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFPEAG 1351 (1402)
Q Consensus 1272 ~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~ 1351 (1402)
...|..+++|++|++++| .++.+.+ +.|.....+++|+|.. |+|+.+....|.++..|+.|++++ ++|+.+..+.
T Consensus 267 ~~cf~~L~~L~~lnlsnN-~i~~i~~--~aFe~~a~l~eL~L~~-N~l~~v~~~~f~~ls~L~tL~L~~-N~it~~~~~a 341 (498)
T KOG4237|consen 267 AKCFKKLPNLRKLNLSNN-KITRIED--GAFEGAAELQELYLTR-NKLEFVSSGMFQGLSGLKTLSLYD-NQITTVAPGA 341 (498)
T ss_pred HHHHhhcccceEeccCCC-ccchhhh--hhhcchhhhhhhhcCc-chHHHHHHHhhhccccceeeeecC-CeeEEEeccc
Confidence 335677777777777764 4554442 3445667777777777 778888777888888999999988 7888887665
Q ss_pred C--ccccccccccCCcchHHhhhCCCCCCC
Q 000594 1352 F--PSSLLSLEIRGCPLLENKCKKGKGQEW 1379 (1402)
Q Consensus 1352 ~--~~sL~~L~i~~cp~l~~~~~~~~~~~~ 1379 (1402)
| ..+|.+|++-++|-..+ |+-.|--+|
T Consensus 342 F~~~~~l~~l~l~~Np~~Cn-C~l~wl~~W 370 (498)
T KOG4237|consen 342 FQTLFSLSTLNLLSNPFNCN-CRLAWLGEW 370 (498)
T ss_pred ccccceeeeeehccCcccCc-cchHHHHHH
Confidence 5 57888888876664332 443333333
No 26
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.13 E-value=4.1e-09 Score=118.45 Aligned_cols=183 Identities=17% Similarity=0.149 Sum_probs=115.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHH----H-Hh
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLK----E-AV 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~----~-~l 256 (1402)
.++.|+|++|+||||+|+.+++......+ ..+|+. ....+..+++..++..++.+... .+.......+. . ..
T Consensus 44 ~~~~l~G~~G~GKTtl~~~l~~~l~~~~~-~~~~~~-~~~~~~~~~l~~i~~~lG~~~~~-~~~~~~~~~l~~~l~~~~~ 120 (269)
T TIGR03015 44 GFILITGEVGAGKTTLIRNLLKRLDQERV-VAAKLV-NTRVDAEDLLRMVAADFGLETEG-RDKAALLRELEDFLIEQFA 120 (269)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhcCCCCe-EEeeee-CCCCCHHHHHHHHHHHcCCCCCC-CCHHHHHHHHHHHHHHHHh
Confidence 48899999999999999999876322221 122332 33457778899999888765432 22222223332 2 23
Q ss_pred cCCeEEEEEeCCCcCChhhHHHhhcccC---CCCCCcEEEEEccchhhhhhcC--------CCcceeecccCCChhhHHH
Q 000594 257 FKKKFLIVLDDVWSERYDLWQALKSPFM---AGAPGSRIIVTTRSMDVASTMG--------SGKNYELELKLLSDDDRWS 325 (1402)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~~~~~l~---~~~~gs~iivTtR~~~v~~~~~--------~~~~~~~~l~~L~~~~~~~ 325 (1402)
.+++.+||+||+|.-....++.+..... .......|++|.... ....+. ......+++++++.+|..+
T Consensus 121 ~~~~~vliiDe~~~l~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~-~~~~l~~~~~~~l~~r~~~~~~l~~l~~~e~~~ 199 (269)
T TIGR03015 121 AGKRALLVVDEAQNLTPELLEELRMLSNFQTDNAKLLQIFLVGQPE-FRETLQSPQLQQLRQRIIASCHLGPLDREETRE 199 (269)
T ss_pred CCCCeEEEEECcccCCHHHHHHHHHHhCcccCCCCeEEEEEcCCHH-HHHHHcCchhHHHHhheeeeeeCCCCCHHHHHH
Confidence 6788999999998866566666543221 112233456665432 222211 1113345699999999999
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 326 VFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 326 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
++...+...+......--.+..+.|++.++|.|..|..++..+
T Consensus 200 ~l~~~l~~~g~~~~~~~~~~~~~~i~~~s~G~p~~i~~l~~~~ 242 (269)
T TIGR03015 200 YIEHRLERAGNRDAPVFSEGAFDAIHRFSRGIPRLINILCDRL 242 (269)
T ss_pred HHHHHHHHcCCCCCCCcCHHHHHHHHHHcCCcccHHHHHHHHH
Confidence 9887764322111111235788999999999999999988876
No 27
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.11 E-value=2.2e-08 Score=118.11 Aligned_cols=302 Identities=14% Similarity=0.071 Sum_probs=169.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc--ccc---CceeEEEeCCCCCHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT--EAF---EPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~~f---~~~~wv~~~~~~~~~~~ 227 (1402)
++.++||++++++|..++...-.. .....+.|+|++|+|||++|++++++... ... -..+|+.+....+...+
T Consensus 14 p~~l~gRe~e~~~l~~~l~~~~~~--~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~~~~ 91 (365)
T TIGR02928 14 PDRIVHRDEQIEELAKALRPILRG--SRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTLYQV 91 (365)
T ss_pred CCCCCCcHHHHHHHHHHHHHHHcC--CCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCHHHH
Confidence 347999999999999998642211 23356899999999999999999975311 111 13457777777778889
Q ss_pred HHHHHHHhc---CCCC-CcCchHHHHHHHHHHhc--CCeEEEEEeCCCcCC---hhhHHHhhccc-CCCC--CCcEEEEE
Q 000594 228 SKAILESIT---LSPC-DLKDLNSVQLKLKEAVF--KKKFLIVLDDVWSER---YDLWQALKSPF-MAGA--PGSRIIVT 295 (1402)
Q Consensus 228 ~~~i~~~~~---~~~~-~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~---~~~~~~~~~~l-~~~~--~gs~iivT 295 (1402)
+..+++++. .... ...+..+....+.+.+. +++++||||+++.-. .+....+.... .... ....+|.+
T Consensus 92 ~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~~~~~L~~l~~~~~~~~~~~~~v~lI~i 171 (365)
T TIGR02928 92 LVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGDDDDLLYQLSRARSNGDLDNAKVGVIGI 171 (365)
T ss_pred HHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccCCcHHHHhHhccccccCCCCCeEEEEEE
Confidence 999999884 2211 11234444555555553 678999999995431 11122222221 1111 22344555
Q ss_pred ccchhhhhhc----CC-CcceeecccCCChhhHHHHHHHhhcCC-CCCCCCchHHHHHHHHHHHcCCChHHH-HHHHhhh
Q 000594 296 TRSMDVASTM----GS-GKNYELELKLLSDDDRWSVFVNHAFEG-RDAGTHGNFESARQRVVEKCKGLPLAA-RALGGLL 368 (1402)
Q Consensus 296 tR~~~v~~~~----~~-~~~~~~~l~~L~~~~~~~lf~~~a~~~-~~~~~~~~~~~~~~~i~~~~~g~PLai-~~~~~~l 368 (1402)
|........+ .. .....+.+++++.++..+++..++-.. ......++..+...+++....|.|-.+ .++-...
T Consensus 172 ~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~~~~~~~~l~~i~~~~~~~~Gd~R~al~~l~~a~ 251 (365)
T TIGR02928 172 SNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYDGVLDDGVIPLCAALAAQEHGDARKAIDLLRVAG 251 (365)
T ss_pred ECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccCCCCChhHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 5443322111 11 112446699999999999998886311 111122233345556677777888443 3322211
Q ss_pred --c--CC---CChhHHHHHhhhhcccCCCCCChhHHHHHHhccCcHHHHHHHhHhccCC--CCccccHHHHHHHH--HHh
Q 000594 369 --R--SK---ERVDEWRTILDSKIWNLQDKTEIPSVLKLSYHHLPSHLKRCFAYCAILP--KDYEFKEEELVLLW--IAE 437 (1402)
Q Consensus 369 --~--~~---~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k~cfl~~~~fp--~~~~i~~~~li~~w--~a~ 437 (1402)
. .+ -+.+....+.+.. -.....-++..||.+.|..+..++..- ++..+...++...+ +++
T Consensus 252 ~~a~~~~~~~it~~~v~~a~~~~---------~~~~~~~~i~~l~~~~~~~l~ai~~~~~~~~~~~~~~~~~~~y~~~~~ 322 (365)
T TIGR02928 252 EIAEREGAERVTEDHVEKAQEKI---------EKDRLLELIRGLPTHSKLVLLAIANLAANDEDPFRTGEVYEVYKEVCE 322 (365)
T ss_pred HHHHHcCCCCCCHHHHHHHHHHH---------HHHHHHHHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence 1 11 1233333333321 123345577899999887776655321 33345666666533 222
Q ss_pred cCccccCCchhHHHHHHHHHHHHHhCcccccc
Q 000594 438 GLIQQSEDSKELEDWGSKYFHDLLSRSMFQKS 469 (1402)
Q Consensus 438 g~i~~~~~~~~~~~~~~~~~~~L~~r~l~~~~ 469 (1402)
.+-.. ...+.....++..|...|++...
T Consensus 323 ~~~~~----~~~~~~~~~~l~~l~~~gli~~~ 350 (365)
T TIGR02928 323 DIGVD----PLTQRRISDLLNELDMLGLVEAE 350 (365)
T ss_pred hcCCC----CCcHHHHHHHHHHHHhcCCeEEE
Confidence 11111 11234567788999999998764
No 28
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.06 E-value=6e-09 Score=119.62 Aligned_cols=280 Identities=14% Similarity=0.117 Sum_probs=148.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+|+|+++.++.+..++....... .....+.|+|++|+||||+|+.+++.. ...+ .++... .......+..++.
T Consensus 25 ~~~vG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~GppG~GKT~la~~ia~~l-~~~~---~~~~~~-~~~~~~~l~~~l~ 98 (328)
T PRK00080 25 DEFIGQEKVKENLKIFIEAAKKRG-EALDHVLLYGPPGLGKTTLANIIANEM-GVNI---RITSGP-ALEKPGDLAAILT 98 (328)
T ss_pred HHhcCcHHHHHHHHHHHHHHHhcC-CCCCcEEEECCCCccHHHHHHHHHHHh-CCCe---EEEecc-cccChHHHHHHHH
Confidence 569999999999988875422111 334578899999999999999998763 2211 111111 1111122233333
Q ss_pred HhcCCCC-CcCch----HHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCC
Q 000594 234 SITLSPC-DLKDL----NSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSG 308 (1402)
Q Consensus 234 ~~~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 308 (1402)
.+....- -.+++ ....+.+...+.+.+..+|+|+..+.. .+...+ .+.+-|..|||...+.......
T Consensus 99 ~l~~~~vl~IDEi~~l~~~~~e~l~~~~e~~~~~~~l~~~~~~~-----~~~~~l---~~~~li~at~~~~~l~~~L~sR 170 (328)
T PRK00080 99 NLEEGDVLFIDEIHRLSPVVEEILYPAMEDFRLDIMIGKGPAAR-----SIRLDL---PPFTLIGATTRAGLLTSPLRDR 170 (328)
T ss_pred hcccCCEEEEecHhhcchHHHHHHHHHHHhcceeeeeccCcccc-----ceeecC---CCceEEeecCCcccCCHHHHHh
Confidence 3321110 00111 112233444555555666666653321 011111 1245566777755443332211
Q ss_pred cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHhhhhcccC
Q 000594 309 KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTILDSKIWNL 388 (1402)
Q Consensus 309 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~ 388 (1402)
-...+++++++.++..+++.+.+...+... -.+....|++.|+|.|-.+..+...+ ..|........-..
T Consensus 171 f~~~~~l~~~~~~e~~~il~~~~~~~~~~~----~~~~~~~ia~~~~G~pR~a~~~l~~~------~~~a~~~~~~~I~~ 240 (328)
T PRK00080 171 FGIVQRLEFYTVEELEKIVKRSARILGVEI----DEEGALEIARRSRGTPRIANRLLRRV------RDFAQVKGDGVITK 240 (328)
T ss_pred cCeeeecCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHcCCCchHHHHHHHHH------HHHHHHcCCCCCCH
Confidence 123456999999999999998875432221 25678899999999996544444332 12222111000000
Q ss_pred CCCCChhHHHHHHhccCcHHHHHHHh-HhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHH-HHHhCccc
Q 000594 389 QDKTEIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFH-DLLSRSMF 466 (1402)
Q Consensus 389 ~~~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~r~l~ 466 (1402)
..-......+...|..|++..+.-+. ....|+.+ .+..+.+.... . .+..+ +++.++ .|++.+|+
T Consensus 241 ~~v~~~l~~~~~~~~~l~~~~~~~l~~~~~~~~~~-~~~~~~~a~~l------g--~~~~~----~~~~~e~~Li~~~li 307 (328)
T PRK00080 241 EIADKALDMLGVDELGLDEMDRKYLRTIIEKFGGG-PVGLDTLAAAL------G--EERDT----IEDVYEPYLIQQGFI 307 (328)
T ss_pred HHHHHHHHHhCCCcCCCCHHHHHHHHHHHHHcCCC-ceeHHHHHHHH------C--CCcch----HHHHhhHHHHHcCCc
Confidence 00012234455677889888777775 66777665 45555443322 1 11223 333445 78899998
Q ss_pred cccC
Q 000594 467 QKSS 470 (1402)
Q Consensus 467 ~~~~ 470 (1402)
+...
T Consensus 308 ~~~~ 311 (328)
T PRK00080 308 QRTP 311 (328)
T ss_pred ccCC
Confidence 7543
No 29
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.04 E-value=8.7e-09 Score=117.89 Aligned_cols=278 Identities=15% Similarity=0.084 Sum_probs=149.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+|+|+++.++++..++....... .....+.++|++|+|||+||+.+++.. ...+ ..+......... .+...+.
T Consensus 4 ~~~iG~~~~~~~l~~~l~~~~~~~-~~~~~~ll~Gp~G~GKT~la~~ia~~~-~~~~---~~~~~~~~~~~~-~l~~~l~ 77 (305)
T TIGR00635 4 AEFIGQEKVKEQLQLFIEAAKMRQ-EALDHLLLYGPPGLGKTTLAHIIANEM-GVNL---KITSGPALEKPG-DLAAILT 77 (305)
T ss_pred HHHcCHHHHHHHHHHHHHHHHhcC-CCCCeEEEECCCCCCHHHHHHHHHHHh-CCCE---EEeccchhcCch-hHHHHHH
Confidence 368999999999998886432211 334567899999999999999998753 2221 112111111111 1222233
Q ss_pred HhcCCCC-CcCch----HHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCC
Q 000594 234 SITLSPC-DLKDL----NSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSG 308 (1402)
Q Consensus 234 ~~~~~~~-~~~~~----~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 308 (1402)
.+....- -.++. ...++.+...+.+.+..+|+|+.++. ..| ...+ .+.+-|..||+...+.......
T Consensus 78 ~~~~~~vl~iDEi~~l~~~~~e~l~~~~~~~~~~~v~~~~~~~--~~~---~~~~---~~~~li~~t~~~~~l~~~l~sR 149 (305)
T TIGR00635 78 NLEEGDVLFIDEIHRLSPAVEELLYPAMEDFRLDIVIGKGPSA--RSV---RLDL---PPFTLVGATTRAGMLTSPLRDR 149 (305)
T ss_pred hcccCCEEEEehHhhhCHHHHHHhhHHHhhhheeeeeccCccc--cce---eecC---CCeEEEEecCCccccCHHHHhh
Confidence 3322110 00111 12234455566666666777766443 111 1112 2355667777765444332211
Q ss_pred cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHhhhhcccC
Q 000594 309 KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTILDSKIWNL 388 (1402)
Q Consensus 309 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~~~~~~~ 388 (1402)
-...+++++++.++..+++.+.+....... -.+....|++.|+|.|-.+..++..+ |...........
T Consensus 150 ~~~~~~l~~l~~~e~~~il~~~~~~~~~~~----~~~al~~ia~~~~G~pR~~~~ll~~~--------~~~a~~~~~~~i 217 (305)
T TIGR00635 150 FGIILRLEFYTVEELAEIVSRSAGLLNVEI----EPEAALEIARRSRGTPRIANRLLRRV--------RDFAQVRGQKII 217 (305)
T ss_pred cceEEEeCCCCHHHHHHHHHHHHHHhCCCc----CHHHHHHHHHHhCCCcchHHHHHHHH--------HHHHHHcCCCCc
Confidence 123456999999999999998875332211 24567889999999997665444432 111100000000
Q ss_pred CC--CCChhHHHHHHhccCcHHHHHHHh-HhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHH-HHHhCc
Q 000594 389 QD--KTEIPSVLKLSYHHLPSHLKRCFA-YCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFH-DLLSRS 464 (1402)
Q Consensus 389 ~~--~~~i~~~l~~sy~~L~~~~k~cfl-~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~-~L~~r~ 464 (1402)
.. -......+...|..++++.+..+. .++.++.+ .+..+.+.... | . + ...++..++ .|++++
T Consensus 218 t~~~v~~~l~~l~~~~~~l~~~~~~~L~al~~~~~~~-~~~~~~ia~~l---g---~--~----~~~~~~~~e~~Li~~~ 284 (305)
T TIGR00635 218 NRDIALKALEMLMIDELGLDEIDRKLLSVLIEQFQGG-PVGLKTLAAAL---G---E--D----ADTIEDVYEPYLLQIG 284 (305)
T ss_pred CHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHhCCC-cccHHHHHHHh---C---C--C----cchHHHhhhHHHHHcC
Confidence 00 011222245678889988877666 55667544 44444433322 1 1 1 123556677 699999
Q ss_pred cccccC
Q 000594 465 MFQKSS 470 (1402)
Q Consensus 465 l~~~~~ 470 (1402)
|++...
T Consensus 285 li~~~~ 290 (305)
T TIGR00635 285 FLQRTP 290 (305)
T ss_pred CcccCC
Confidence 997543
No 30
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=99.01 E-value=3.9e-12 Score=137.04 Aligned_cols=296 Identities=16% Similarity=0.186 Sum_probs=166.2
Q ss_pred CCcceEEEecCCCccCCch-hhhcCCCcchhhhhccccCcccccccC---CcCcccEEEeccCCCcccccccCCCcCCcc
Q 000594 1000 SSLSEITIEHCNALTSLTD-GMIHNNAQLKVLRIKGCHSLTSIAREH---LPSSLKAIEVEDCKTLQSVLDDRENSCTSS 1075 (1402)
Q Consensus 1000 ~~L~~L~l~~c~~l~~l~~-~~~~~l~~L~~L~L~~c~~l~~i~~~~---~~~~L~~L~l~~c~~l~~l~~~~~~~~~~~ 1075 (1402)
.-|+.|.+++|.....-+. ....++|++++|++.+|..+++..-.. +.+.|+.+++..|..+++..-.
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk-------- 209 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLK-------- 209 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHH--------
Confidence 4688899999877654333 235678899999999988776643222 2355666666666655543211
Q ss_pred chhhcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCcccccccccCcccccEEEEeecCcccc--c
Q 000594 1076 SVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLES--I 1153 (1402)
Q Consensus 1076 ~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~--~ 1153 (1402)
.....|++|+++.++.|+.++.- .+.....++..++.+.+.||...+. +
T Consensus 210 --------~la~gC~kL~~lNlSwc~qi~~~---------------------gv~~~~rG~~~l~~~~~kGC~e~~le~l 260 (483)
T KOG4341|consen 210 --------YLAEGCRKLKYLNLSWCPQISGN---------------------GVQALQRGCKELEKLSLKGCLELELEAL 260 (483)
T ss_pred --------HHHHhhhhHHHhhhccCchhhcC---------------------cchHHhccchhhhhhhhcccccccHHHH
Confidence 01123444555555555544421 1112223334455555555544321 1
Q ss_pred ccccCCcccccEEeecCCCCcCccc--cccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccccccCCCCCCCCCC
Q 000594 1154 AERFHDDACLRSTWISNCENLKSLP--KGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLS 1231 (1402)
Q Consensus 1154 ~~~~~~l~~L~~L~ls~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~ 1231 (1402)
-..-..+.-+..+++..|+.++... ..-..+..|+.|+.++|.++++.+...+ ..+++
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aL--------------------g~~~~ 320 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWAL--------------------GQHCH 320 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHH--------------------hcCCC
Confidence 1222333455566666666655432 1113456677777777766555432111 03456
Q ss_pred CccEEEeccCCCccccCCC---CCCCCCceeEeccCCCCccccccc-cCCcCccceeeecCCCCccccccc--ccCCcCC
Q 000594 1232 SLQQLFLKKCPGIVFFPEE---GLSTNLTSVGISGDNIYKPLVKWG-FHKLTSLRELSIHGCSDAVSFPEV--EKGVILP 1305 (1402)
Q Consensus 1232 ~L~~L~l~~c~~l~~l~~~---~~~~~L~~L~l~~~~~~~~~~~~~-l~~l~~L~~L~l~~c~~l~~~~~~--~~~~~~~ 1305 (1402)
+|+.|.+++|.+++..... ...+.|+.+++.+|.......... -.+++.|+.|.+++|..++.-... ....-..
T Consensus 321 ~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~ 400 (483)
T KOG4341|consen 321 NLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSL 400 (483)
T ss_pred ceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccc
Confidence 6666666666554433222 225566666666666553221112 237888999999988776654110 0001135
Q ss_pred CcccceecccCCCcccCCccccCCCCCCCeeeccCCCCCCCCCCCCC
Q 000594 1306 TTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPNFTSFPEAGF 1352 (1402)
Q Consensus 1306 ~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~ 1352 (1402)
..|..|.+.+|+.+.+-..+.+..+++|+.+++.+|..++.-+...+
T Consensus 401 ~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~vtk~~i~~~ 447 (483)
T KOG4341|consen 401 EGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQDVTKEAISRF 447 (483)
T ss_pred cccceeeecCCCCchHHHHHHHhhCcccceeeeechhhhhhhhhHHH
Confidence 67888888888888766656677788999999999988877664333
No 31
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=98.99 E-value=3.1e-08 Score=117.78 Aligned_cols=292 Identities=17% Similarity=0.229 Sum_probs=185.8
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCC-
Q 000594 164 ARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSPCD- 241 (1402)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~- 241 (1402)
.++.+.|... ...|.+.|..++|.|||||+.+... ....=..++|++... +.++.++...++..++.-...
T Consensus 25 ~rL~~~L~~~-----~~~RL~li~APAGfGKttl~aq~~~--~~~~~~~v~Wlslde~dndp~rF~~yLi~al~~~~p~~ 97 (894)
T COG2909 25 PRLLDRLRRA-----NDYRLILISAPAGFGKTTLLAQWRE--LAADGAAVAWLSLDESDNDPARFLSYLIAALQQATPTL 97 (894)
T ss_pred HHHHHHHhcC-----CCceEEEEeCCCCCcHHHHHHHHHH--hcCcccceeEeecCCccCCHHHHHHHHHHHHHHhCccc
Confidence 3455555433 4568999999999999999999865 222334588999875 457888888888888743221
Q ss_pred ------------cCchHHHHHHHHHHhc--CCeEEEEEeCCCcCChhhHH-HhhcccCCCCCCcEEEEEccchhhh---h
Q 000594 242 ------------LKDLNSVQLKLKEAVF--KKKFLIVLDDVWSERYDLWQ-ALKSPFMAGAPGSRIIVTTRSMDVA---S 303 (1402)
Q Consensus 242 ------------~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~-~~~~~l~~~~~gs~iivTtR~~~v~---~ 303 (1402)
..+...+...+...+. .++..+||||..-....... .+...+....++-.+|||||+..-. .
T Consensus 98 ~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~~~~l~~~l~fLl~~~P~~l~lvv~SR~rP~l~la~ 177 (894)
T COG2909 98 GDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLISDPALHEALRFLLKHAPENLTLVVTSRSRPQLGLAR 177 (894)
T ss_pred cHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccCcccHHHHHHHHHHhCCCCeEEEEEeccCCCCcccc
Confidence 2234445555555444 57899999998553323333 3333334556788999999986422 2
Q ss_pred hcCCCcceeec--ccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHh
Q 000594 304 TMGSGKNYELE--LKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTIL 381 (1402)
Q Consensus 304 ~~~~~~~~~~~--l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~ 381 (1402)
..-.....++. .=.++.+|+-++|....... -.+...+.+.+..+|-+-|+..++=.++.+.+.+.-...+
T Consensus 178 lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l~-------Ld~~~~~~L~~~teGW~~al~L~aLa~~~~~~~~q~~~~L 250 (894)
T COG2909 178 LRLRDELLEIGSEELRFDTEEAAAFLNDRGSLP-------LDAADLKALYDRTEGWAAALQLIALALRNNTSAEQSLRGL 250 (894)
T ss_pred eeehhhHHhcChHhhcCChHHHHHHHHHcCCCC-------CChHHHHHHHhhcccHHHHHHHHHHHccCCCcHHHHhhhc
Confidence 11111111111 11479999999998765211 1245677899999999999999988888443322222211
Q ss_pred hhhcccCCCCCChh-HHHHHHhccCcHHHHHHHhHhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHHHH
Q 000594 382 DSKIWNLQDKTEIP-SVLKLSYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFHDL 460 (1402)
Q Consensus 382 ~~~~~~~~~~~~i~-~~l~~sy~~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L 460 (1402)
.-. ...+. -...--++.||+++|..++-+|+++. +. ++|+..- +-++-|...+++|
T Consensus 251 sG~------~~~l~dYL~eeVld~Lp~~l~~FLl~~svl~~---f~-~eL~~~L-------------tg~~ng~amLe~L 307 (894)
T COG2909 251 SGA------ASHLSDYLVEEVLDRLPPELRDFLLQTSVLSR---FN-DELCNAL-------------TGEENGQAMLEEL 307 (894)
T ss_pred cch------HHHHHHHHHHHHHhcCCHHHHHHHHHHHhHHH---hh-HHHHHHH-------------hcCCcHHHHHHHH
Confidence 100 01111 12234578999999999999999853 11 2333321 1123366789999
Q ss_pred HhCcccc-ccCCCCCcEEEchhHHHHHHHhhcC
Q 000594 461 LSRSMFQ-KSSNSESKYVMHDLVHDLAQWASGE 492 (1402)
Q Consensus 461 ~~r~l~~-~~~~~~~~~~mHdlv~~~~~~~~~~ 492 (1402)
-++++|- +-++....|+.|.++.||.+..-..
T Consensus 308 ~~~gLFl~~Ldd~~~WfryH~LFaeFL~~r~~~ 340 (894)
T COG2909 308 ERRGLFLQRLDDEGQWFRYHHLFAEFLRQRLQR 340 (894)
T ss_pred HhCCCceeeecCCCceeehhHHHHHHHHhhhcc
Confidence 9999874 5556688999999999998765443
No 32
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.98 E-value=3.7e-09 Score=116.53 Aligned_cols=196 Identities=18% Similarity=0.197 Sum_probs=98.8
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH----
Q 000594 156 VYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI---- 231 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i---- 231 (1402)
|+||++|+++|.+++... ..+.+.|+|+.|+|||+|++++.+......+ .++|+...+...... ...+
T Consensus 1 F~gR~~el~~l~~~l~~~------~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~-~~~y~~~~~~~~~~~-~~~~~~~~ 72 (234)
T PF01637_consen 1 FFGREKELEKLKELLESG------PSQHILLYGPRGSGKTSLLKEFINELKEKGY-KVVYIDFLEESNESS-LRSFIEET 72 (234)
T ss_dssp S-S-HHHHHHHHHCHHH--------SSEEEEEESTTSSHHHHHHHHHHHCT--EE-CCCHHCCTTBSHHHH-HHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhh------cCcEEEEEcCCcCCHHHHHHHHHHHhhhcCC-cEEEEecccchhhhH-HHHHHHHH
Confidence 799999999999998753 2358999999999999999999875422233 344554444432221 1111
Q ss_pred ------HHHhc----CCCC------CcCchHHHHHHHHHHhc--CCeEEEEEeCCCcCC------hhhHHHhhcccC---
Q 000594 232 ------LESIT----LSPC------DLKDLNSVQLKLKEAVF--KKKFLIVLDDVWSER------YDLWQALKSPFM--- 284 (1402)
Q Consensus 232 ------~~~~~----~~~~------~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~------~~~~~~~~~~l~--- 284 (1402)
.+.+. .... ...........+.+.+. +++++||+||+..-. ......+...+.
T Consensus 73 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~~~~~~~~l~~~~~~~~ 152 (234)
T PF01637_consen 73 SLADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEEDKDFLKSLRSLLDSLL 152 (234)
T ss_dssp HHHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTTTHHHHHHHHHHHHH--
T ss_pred HHHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccchHHHHHHHHHHHhhcc
Confidence 11121 1100 01111222222323232 445999999995432 111222222222
Q ss_pred CCCCCcEEEEEccchhhhhh-cC-----CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 000594 285 AGAPGSRIIVTTRSMDVAST-MG-----SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP 358 (1402)
Q Consensus 285 ~~~~gs~iivTtR~~~v~~~-~~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 358 (1402)
...+.+.|+++|. ..+... .. ......+.+++++.+++++++...+-.. ... +.-.+..++|...+||+|
T Consensus 153 ~~~~~~~v~~~S~-~~~~~~~~~~~~~~~~~~~~~~l~~l~~~e~~~~~~~~~~~~--~~~-~~~~~~~~~i~~~~gG~P 228 (234)
T PF01637_consen 153 SQQNVSIVITGSS-DSLMEEFLDDKSPLFGRFSHIELKPLSKEEAREFLKELFKEL--IKL-PFSDEDIEEIYSLTGGNP 228 (234)
T ss_dssp --TTEEEEEEESS-HHHHHHTT-TTSTTTT---EEEE----HHHHHHHHHHHHHCC---------HHHHHHHHHHHTT-H
T ss_pred ccCCceEEEECCc-hHHHHHhhcccCccccccceEEEeeCCHHHHHHHHHHHHHHh--hcc-cCCHHHHHHHHHHhCCCH
Confidence 2333444444444 333332 11 1112336799999999999998876332 111 122556689999999999
Q ss_pred HHHHH
Q 000594 359 LAARA 363 (1402)
Q Consensus 359 Lai~~ 363 (1402)
..|..
T Consensus 229 ~~l~~ 233 (234)
T PF01637_consen 229 RYLQE 233 (234)
T ss_dssp HHHHH
T ss_pred HHHhc
Confidence 88764
No 33
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.89 E-value=6.8e-11 Score=127.68 Aligned_cols=281 Identities=16% Similarity=0.221 Sum_probs=165.1
Q ss_pred cCcceeEeecCCCccccc--c-ccCCCCcceEEEecCCCccCCch-hhhcCCCcchhhhhccccCccccccc---CCcCc
Q 000594 977 TCLKDLHIGICPTLVSLR--N-ICFLSSLSEITIEHCNALTSLTD-GMIHNNAQLKVLRIKGCHSLTSIARE---HLPSS 1049 (1402)
Q Consensus 977 ~~L~~L~L~~~~~l~~~~--~-~~~l~~L~~L~l~~c~~l~~l~~-~~~~~l~~L~~L~L~~c~~l~~i~~~---~~~~~ 1049 (1402)
..|++|.+.+|.....-+ . ....|++++|.+.+|.+++...- ..-..++.|++|++..|..+++..-. ...++
T Consensus 138 g~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~k 217 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRK 217 (483)
T ss_pred cccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhh
Confidence 468999999997554332 2 24889999999999998875533 33467899999999999998876433 23579
Q ss_pred ccEEEeccCCCcccccccCCCcCCccchhhcccccCCCccccccceeeccCCCCccccCCCccccccccccccccCcccc
Q 000594 1050 LKAIEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVL 1129 (1402)
Q Consensus 1050 L~~L~l~~c~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l 1129 (1402)
|++|+++.|+.+..-. .......+..++.+...+|..+.. +.+
T Consensus 218 L~~lNlSwc~qi~~~g----------------v~~~~rG~~~l~~~~~kGC~e~~l---------------------e~l 260 (483)
T KOG4341|consen 218 LKYLNLSWCPQISGNG----------------VQALQRGCKELEKLSLKGCLELEL---------------------EAL 260 (483)
T ss_pred HHHhhhccCchhhcCc----------------chHHhccchhhhhhhhcccccccH---------------------HHH
Confidence 9999999998776410 000001111233333333333221 011
Q ss_pred cccccCcccccEEEEeecCcccccc--cccCCcccccEEeecCCCCcCccc--cccCCCCCCCeEeeecCCCCcccCCCC
Q 000594 1130 TSECQLPVAVEELTIISCSNLESIA--ERFHDDACLRSTWISNCENLKSLP--KGLSNLSHLHRISISGCHNLASLPEDA 1205 (1402)
Q Consensus 1130 ~~~~~~l~~L~~L~L~~~~~~~~~~--~~~~~l~~L~~L~ls~c~~l~~l~--~~l~~l~~L~~L~l~~c~~l~~l~~~~ 1205 (1402)
-..-..+.-+-.+++.+|..+++.. ..-..+..|+.|..++|..++..+ .--+++++|+.|-+++|..+++.....
T Consensus 261 ~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~ 340 (483)
T KOG4341|consen 261 LKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTM 340 (483)
T ss_pred HHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhh
Confidence 1112233334445555565554432 122345677777777776655432 122456777788888777665543322
Q ss_pred C---CCcccceeeccccccCCC---CCCCCCCCccEEEeccCCCccccCC-----C-CCCCCCceeEeccCCCCcccccc
Q 000594 1206 L---PSNLVGVLIENCDKLKAP---LPTGKLSSLQQLFLKKCPGIVFFPE-----E-GLSTNLTSVGISGDNIYKPLVKW 1273 (1402)
Q Consensus 1206 ~---~~~L~~L~l~~c~~l~~~---~~~~~l~~L~~L~l~~c~~l~~l~~-----~-~~~~~L~~L~l~~~~~~~~~~~~ 1273 (1402)
+ .+.|+.+++..|....+. ....+++.|+.|.+++|..+++-.. . .....|++|.+++|+.+.+....
T Consensus 341 l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le 420 (483)
T KOG4341|consen 341 LGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLE 420 (483)
T ss_pred hhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHH
Confidence 2 236777777777655542 1126788888888888876654411 1 12445666666766666444433
Q ss_pred ccCCcCccceeeecCCCCccc
Q 000594 1274 GFHKLTSLRELSIHGCSDAVS 1294 (1402)
Q Consensus 1274 ~l~~l~~L~~L~l~~c~~l~~ 1294 (1402)
.+..+++|+.+++-+|..+..
T Consensus 421 ~l~~c~~Leri~l~~~q~vtk 441 (483)
T KOG4341|consen 421 HLSICRNLERIELIDCQDVTK 441 (483)
T ss_pred HHhhCcccceeeeechhhhhh
Confidence 455666666666666655543
No 34
>PF05729 NACHT: NACHT domain
Probab=98.83 E-value=1.4e-08 Score=104.84 Aligned_cols=143 Identities=20% Similarity=0.269 Sum_probs=85.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccc-----cCceeEEEeCCCCCHH---HHHHHHHHHhcCCCCCcCchHHHHHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSHDFDVL---RISKAILESITLSPCDLKDLNSVQLKLK 253 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----f~~~~wv~~~~~~~~~---~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 253 (1402)
|++.|+|.+|+||||+++.++.+..... +...+|+......... .+...+..+..... .........+
T Consensus 1 r~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~---~~~~~~~~~~- 76 (166)
T PF05729_consen 1 RVLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESI---APIEELLQEL- 76 (166)
T ss_pred CEEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccch---hhhHHHHHHH-
Confidence 4789999999999999999987653222 3455666665443322 33333333332211 1111111111
Q ss_pred HHhcCCeEEEEEeCCCcCCh--h-----hHHHhhcccCCC--CCCcEEEEEccchhhhh---hcCCCcceeecccCCChh
Q 000594 254 EAVFKKKFLIVLDDVWSERY--D-----LWQALKSPFMAG--APGSRIIVTTRSMDVAS---TMGSGKNYELELKLLSDD 321 (1402)
Q Consensus 254 ~~l~~k~~LlVlDdv~~~~~--~-----~~~~~~~~l~~~--~~gs~iivTtR~~~v~~---~~~~~~~~~~~l~~L~~~ 321 (1402)
.-+.++++||+|++.+-.. . .+..+...+... .++.+||||+|...... ..... ..+++.+|+++
T Consensus 77 -~~~~~~~llilDglDE~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~liit~r~~~~~~~~~~~~~~--~~~~l~~~~~~ 153 (166)
T PF05729_consen 77 -LEKNKRVLLILDGLDELEEQDQSQERQRLLDLLSQLLPQALPPGVKLIITSRPRAFPDLRRRLKQA--QILELEPFSEE 153 (166)
T ss_pred -HHcCCceEEEEechHhcccchhhhHHHHHHHHHHHHhhhccCCCCeEEEEEcCChHHHHHHhcCCC--cEEEECCCCHH
Confidence 2257899999999954221 1 123333333322 57899999999876633 22222 34669999999
Q ss_pred hHHHHHHHhh
Q 000594 322 DRWSVFVNHA 331 (1402)
Q Consensus 322 ~~~~lf~~~a 331 (1402)
+..+++.++.
T Consensus 154 ~~~~~~~~~f 163 (166)
T PF05729_consen 154 DIKQYLRKYF 163 (166)
T ss_pred HHHHHHHHHh
Confidence 9999997654
No 35
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.74 E-value=1.4e-09 Score=126.34 Aligned_cols=86 Identities=22% Similarity=0.136 Sum_probs=46.6
Q ss_pred ccCCCcccEEEecccccc-----cccccccccccccceeccCccccc-------cchhhhcCCCCcEEecCCccccccCc
Q 000594 566 LPKCKKLRVLSLGRYLIT-----EVPVSIGCLKHLRYLNFSNSWIQC-------LPEVITSLFNLEILILSNCWFLLKLP 633 (1402)
Q Consensus 566 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~~~i~~-------lp~~i~~L~~L~~LdLs~~~~~~~lP 633 (1402)
|..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++.+|+.|++++|.+....+
T Consensus 19 ~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~ 98 (319)
T cd00116 19 LPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGC 98 (319)
T ss_pred HHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHH
Confidence 444445666666666552 234445555556666666555442 23345556666666666665444444
Q ss_pred hhhhcccc---cccccccCcc
Q 000594 634 SSIGNLVN---LHHLDIEGAY 651 (1402)
Q Consensus 634 ~~i~~L~~---L~~L~l~~~~ 651 (1402)
..+..+.+ |++|++++|.
T Consensus 99 ~~~~~l~~~~~L~~L~ls~~~ 119 (319)
T cd00116 99 GVLESLLRSSSLQELKLNNNG 119 (319)
T ss_pred HHHHHHhccCcccEEEeeCCc
Confidence 44554444 6666666654
No 36
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=98.74 E-value=1.6e-06 Score=104.21 Aligned_cols=215 Identities=10% Similarity=0.054 Sum_probs=120.8
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc----ccccC--ceeEEEeCCCCCHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL----TEAFE--PKAWVCVSHDFDVLR 226 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~~~f~--~~~wv~~~~~~~~~~ 226 (1402)
++.+.||++|+++|...|...-... ....++.|+|++|.|||+.++.|.+... ....+ .+++|.+..-.+...
T Consensus 754 PD~LPhREeEIeeLasfL~paIkgs-gpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~Lstp~s 832 (1164)
T PTZ00112 754 PKYLPCREKEIKEVHGFLESGIKQS-GSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMNVVHPNA 832 (1164)
T ss_pred CCcCCChHHHHHHHHHHHHHHHhcC-CCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCccCCHHH
Confidence 4678899999999999886532211 3335788999999999999999987531 11222 245666666677888
Q ss_pred HHHHHHHHhcCCCC-CcCchHHHHHHHHHHhc---CCeEEEEEeCCCcCChhhHHHhhcccC-CCCCCcEEEE--Eccch
Q 000594 227 ISKAILESITLSPC-DLKDLNSVQLKLKEAVF---KKKFLIVLDDVWSERYDLWQALKSPFM-AGAPGSRIIV--TTRSM 299 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~-~~~~~~~~~~~l~~~l~---~k~~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iiv--TtR~~ 299 (1402)
++..|.+++..... ......+....+...+. +...+||||+|..-....-+.+...+. ....+++|+| +|...
T Consensus 833 IYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK~QDVLYnLFR~~~~s~SKLiLIGISNdl 912 (1164)
T PTZ00112 833 AYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITKTQKVLFTLFDWPTKINSKLVLIAISNTM 912 (1164)
T ss_pred HHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCccHHHHHHHHHHHhhccCCeEEEEEecCch
Confidence 88999988854332 22223334444444432 234589999994311011111221111 1124556554 33321
Q ss_pred hhh----hhcCCC-cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 300 DVA----STMGSG-KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 300 ~v~----~~~~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
+.. ..+... ....+..+|++.++-.+++..++-.....-.+..++-+|+.++...|-.-.||.++-.+.
T Consensus 913 DLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~gVLdDdAIELIArkVAq~SGDARKALDILRrAg 986 (1164)
T PTZ00112 913 DLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCKEIIDHTAIQLCARKVANVSGDIRKALQICRKAF 986 (1164)
T ss_pred hcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHhhhhcCCHHHHHHHHHHHHH
Confidence 211 111111 122245799999999999999885322222222234444444444444556666555544
No 37
>COG3899 Predicted ATPase [General function prediction only]
Probab=98.71 E-value=5.4e-07 Score=114.80 Aligned_cols=309 Identities=16% Similarity=0.133 Sum_probs=172.7
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCcee---EEEeCCCCC---HHHHHH
Q 000594 156 VYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA---WVCVSHDFD---VLRISK 229 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~---wv~~~~~~~---~~~~~~ 229 (1402)
++||+.|.+.|...+..... +...++.+.|..|||||+|+++|.... .+.+...+ +-....... ..+.++
T Consensus 2 l~GRe~ev~~Ll~~f~~v~~---g~~~~~lv~G~sGIGKsalv~ev~~~i-~~~~~~~i~~~f~q~~~~ipl~~lvq~~r 77 (849)
T COG3899 2 LYGRETELAQLLAAFDRVSK---GRGEVVLVAGESGIGKSALVNEVHKPI-TQQRGYFIKGKFDQFERNIPLSPLVQAFR 77 (849)
T ss_pred CCchHhHHHHHHHHHHHHhC---CCeEEEEEeecCCCcHHHHHHHHHHHH-hccceeeeHhhcccccCCCchHHHHHHHH
Confidence 68999999999999876443 445699999999999999999998753 22211111 111111111 223344
Q ss_pred HHHHHh-------------------cCCCCC----------------------cCchH-----HHHHHHHHHhc-CCeEE
Q 000594 230 AILESI-------------------TLSPCD----------------------LKDLN-----SVQLKLKEAVF-KKKFL 262 (1402)
Q Consensus 230 ~i~~~~-------------------~~~~~~----------------------~~~~~-----~~~~~l~~~l~-~k~~L 262 (1402)
+++.++ +..... ..... ..+..+..... .++.+
T Consensus 78 ~l~~~ll~~~~~~~~~~~~~il~~~g~~~~~~~~vip~L~~i~g~~~~~~el~~~~~~~r~n~~~~~~i~~~~~~~~plV 157 (849)
T COG3899 78 DLMGQLLSESDTRILSWRARLLAALGENGQVIIDVIPELELIIGKRPPALELSPTAAQNRFNLAFLRFIQVFTAEEHPLV 157 (849)
T ss_pred HHHHHHhhccchHHHHHHHHHHHHhcccchhHHhhhHHHHhhcCCCcchhhcccchhHHHHHHHHHHHHHHHHhccCCeE
Confidence 444433 111000 00000 11122333333 56999
Q ss_pred EEEeCCCcCChhhHHHhhcccCCCC----CCcEEE--EEccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCC
Q 000594 263 IVLDDVWSERYDLWQALKSPFMAGA----PGSRII--VTTRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRD 336 (1402)
Q Consensus 263 lVlDdv~~~~~~~~~~~~~~l~~~~----~gs~ii--vTtR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 336 (1402)
+|+||+...|....+-+........ .-..|. .|.+..--.-.........+.|.||+..+...+..........
T Consensus 158 i~leDlhWaD~~SL~lL~~lm~~~~~~~~~~n~v~~~h~~~~~~~~~~~~~~~i~~I~L~PL~~~d~~~lV~~~l~~~~~ 237 (849)
T COG3899 158 IVLEDLHWADSASLKLLQLLMDRIAIGAYRDNEVLLLHPLRPTLGEILKSATNITTITLAPLSRADTNQLVAATLGCTKL 237 (849)
T ss_pred EEEecccccChhHHHHHHHHHHhcchhhhhccccccCCCccchhhHHhhcCCceeEEecCcCchhhHHHHHHHHhCCccc
Confidence 9999996554433333222221111 011233 3333221111112223456779999999999999877632121
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCC------CChhHHHHHhhhhcccCCCCCChhHHHHHHhccCcHHHH
Q 000594 337 AGTHGNFESARQRVVEKCKGLPLAARALGGLLRSK------ERVDEWRTILDSKIWNLQDKTEIPSVLKLSYHHLPSHLK 410 (1402)
Q Consensus 337 ~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~------~~~~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~~k 410 (1402)
...+....|+++.+|+|+.+..+-..+... .+...|..=..+ ....+..+.+...+..-.+.||...|
T Consensus 238 -----~~~p~~~~i~~kt~GnPfFi~e~lk~l~~~~~i~f~~~~~~w~~~~~~-i~~~~~~~~vv~~l~~rl~kL~~~t~ 311 (849)
T COG3899 238 -----LPAPLLELIFEKTKGNPFFIEEFLKALYEEGLLVFNFDTGAWQCSIAS-LGILATTDAVVEFLAARLQKLPGTTR 311 (849)
T ss_pred -----ccchHHHHHHHHhcCCCccHHHHHHHHHhCCeeEecCCCcceeccHHh-cCCchhhHHHHHHHHHHHhcCCHHHH
Confidence 235678899999999999999998888764 223334332111 01111122245568889999999999
Q ss_pred HHHhHhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHHHHHhCcccccc-----CCCCCcE---EEchhH
Q 000594 411 RCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFHDLLSRSMFQKS-----SNSESKY---VMHDLV 482 (1402)
Q Consensus 411 ~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~r~l~~~~-----~~~~~~~---~mHdlv 482 (1402)
+.+-..|++-.. |+.+.|...|-. ....++....+.|....++-.+ ....... ..||.|
T Consensus 312 ~Vl~~AA~iG~~--F~l~~La~l~~~-----------~~~~~a~~l~~al~e~lI~~~~~~yr~~~~~~~~~Y~F~H~~v 378 (849)
T COG3899 312 EVLKAAACIGNR--FDLDTLAALAED-----------SPALEAAALLDALQEGLILPLSETYRFGSNVDIATYKFLHDRV 378 (849)
T ss_pred HHHHHHHHhCcc--CCHHHHHHHHhh-----------chHHHHHHHHHHhHhhceeccccccccccccchhhHHhhHHHH
Confidence 999999999644 556666555511 2234455555655554444321 1111112 468888
Q ss_pred HHHHH
Q 000594 483 HDLAQ 487 (1402)
Q Consensus 483 ~~~~~ 487 (1402)
++.|-
T Consensus 379 qqaaY 383 (849)
T COG3899 379 QQAAY 383 (849)
T ss_pred HHHHh
Confidence 87764
No 38
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=98.71 E-value=2.3e-09 Score=124.40 Aligned_cols=89 Identities=18% Similarity=0.052 Sum_probs=62.9
Q ss_pred EEEecccccc--cccccccccccccceeccCcccc-----ccchhhhcCCCCcEEecCCcccc------ccCchhhhccc
Q 000594 574 VLSLGRYLIT--EVPVSIGCLKHLRYLNFSNSWIQ-----CLPEVITSLFNLEILILSNCWFL------LKLPSSIGNLV 640 (1402)
Q Consensus 574 ~L~L~~~~i~--~lp~~i~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~LdLs~~~~~------~~lP~~i~~L~ 640 (1402)
.|+|.++.++ ..+..+..+.+|++|+++++.++ .++..+...++|++|+++++... ..++..+.+++
T Consensus 2 ~l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~ 81 (319)
T cd00116 2 QLSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGC 81 (319)
T ss_pred ccccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcC
Confidence 4667776664 34556777888999999999883 56777888899999999988543 22445677788
Q ss_pred ccccccccCcccccccccCccc
Q 000594 641 NLHHLDIEGAYQLCELPLGMKE 662 (1402)
Q Consensus 641 ~L~~L~l~~~~~l~~lp~~i~~ 662 (1402)
+|++|++++|......+..+..
T Consensus 82 ~L~~L~l~~~~~~~~~~~~~~~ 103 (319)
T cd00116 82 GLQELDLSDNALGPDGCGVLES 103 (319)
T ss_pred ceeEEEccCCCCChhHHHHHHH
Confidence 9999999888733333333333
No 39
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=5.7e-08 Score=109.20 Aligned_cols=155 Identities=23% Similarity=0.408 Sum_probs=101.6
Q ss_pred cccccceeeccCCCCccccCCCccccccccccccccCcccccccccCcccccEEEEeecCcccccccccCCcccccEEee
Q 000594 1089 YLDLESLSVFNCPSLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWI 1168 (1402)
Q Consensus 1089 ~~~L~~L~l~~c~~L~~~~~~~~~~~L~~L~l~~c~~l~~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~l 1168 (1402)
+.++..|++++| .++.+| .+|++|++|.+++|..++.+|..+ +++|+.|++++|..+..+| .+|+.|++
T Consensus 51 ~~~l~~L~Is~c-~L~sLP--~LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP------~sLe~L~L 119 (426)
T PRK15386 51 ARASGRLYIKDC-DIESLP--VLPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLP------ESVRSLEI 119 (426)
T ss_pred hcCCCEEEeCCC-CCcccC--CCCCCCcEEEccCCCCcccCCchh--hhhhhheEccCcccccccc------cccceEEe
Confidence 467889999998 788887 688899999999999988888654 4688899998887777666 45666777
Q ss_pred cCC--CCcCccccccCCCCCCCeEeeecCCCC--cccCCCCCCCcccceeeccccccCCCCCCCCCCCccEEEeccCCCc
Q 000594 1169 SNC--ENLKSLPKGLSNLSHLHRISISGCHNL--ASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGI 1244 (1402)
Q Consensus 1169 s~c--~~l~~l~~~l~~l~~L~~L~l~~c~~l--~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l 1244 (1402)
+++ ..+..+|. +|+.|.+.+++.. ..+| ..+|++|+.|++.+|..+..+ ..-..+|+.|+++.|...
T Consensus 120 ~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp-~~LPsSLk~L~Is~c~~i~LP--~~LP~SLk~L~ls~n~~~ 190 (426)
T PRK15386 120 KGSATDSIKNVPN------GLTSLSINSYNPENQARID-NLISPSLKTLSLTGCSNIILP--EKLPESLQSITLHIEQKT 190 (426)
T ss_pred CCCCCcccccCcc------hHhheeccccccccccccc-cccCCcccEEEecCCCcccCc--ccccccCcEEEecccccc
Confidence 542 23455553 4667776543322 1222 245677888888887766432 222357777777664311
Q ss_pred -cccCCCCCCCCCceeEeccC
Q 000594 1245 -VFFPEEGLSTNLTSVGISGD 1264 (1402)
Q Consensus 1245 -~~l~~~~~~~~L~~L~l~~~ 1264 (1402)
-.++...+++++ .|++.+|
T Consensus 191 sLeI~~~sLP~nl-~L~f~n~ 210 (426)
T PRK15386 191 TWNISFEGFPDGL-DIDLQNS 210 (426)
T ss_pred cccCccccccccc-Eechhhh
Confidence 123444555666 6666665
No 40
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.67 E-value=7.9e-08 Score=108.07 Aligned_cols=59 Identities=27% Similarity=0.629 Sum_probs=35.7
Q ss_pred CcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCCCCCCcccceeeccccccC
Q 000594 1159 DDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPEDALPSNLVGVLIENCDKLK 1222 (1402)
Q Consensus 1159 ~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~ 1222 (1402)
.+..+..|++++| .++++|. -.++|++|.+++|+.++.+|. .+|.+|+.|.+.+|..+.
T Consensus 50 ~~~~l~~L~Is~c-~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~-~LP~nLe~L~Ls~Cs~L~ 108 (426)
T PRK15386 50 EARASGRLYIKDC-DIESLPV---LPNELTEITIENCNNLTTLPG-SIPEGLEKLTVCHCPEIS 108 (426)
T ss_pred HhcCCCEEEeCCC-CCcccCC---CCCCCcEEEccCCCCcccCCc-hhhhhhhheEccCccccc
Confidence 3466777777776 5666662 123577777777777776663 334555555555554443
No 41
>PRK06893 DNA replication initiation factor; Validated
Probab=98.62 E-value=5.5e-07 Score=97.18 Aligned_cols=155 Identities=19% Similarity=0.213 Sum_probs=94.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+.+.|+|++|+|||+||+++++...+. ...+.|+.+.... .... .+.+.++ +.-
T Consensus 40 ~~l~l~G~~G~GKThL~~ai~~~~~~~-~~~~~y~~~~~~~---~~~~---------------------~~~~~~~-~~d 93 (229)
T PRK06893 40 PFFYIWGGKSSGKSHLLKAVSNHYLLN-QRTAIYIPLSKSQ---YFSP---------------------AVLENLE-QQD 93 (229)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEeeHHHhh---hhhH---------------------HHHhhcc-cCC
Confidence 478999999999999999999864333 3345666653110 0000 1111122 334
Q ss_pred EEEEeCCCcCC-hhhHHH-hhcccCCC-CCCcEEEE-Eccc---------hhhhhhcCCCcceeecccCCChhhHHHHHH
Q 000594 262 LIVLDDVWSER-YDLWQA-LKSPFMAG-APGSRIIV-TTRS---------MDVASTMGSGKNYELELKLLSDDDRWSVFV 328 (1402)
Q Consensus 262 LlVlDdv~~~~-~~~~~~-~~~~l~~~-~~gs~iiv-TtR~---------~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~ 328 (1402)
+||+||+|... ...|+. +...+... ..|..+|| |++. ++++..+.....+ +++++++++.++++.
T Consensus 94 lLilDDi~~~~~~~~~~~~l~~l~n~~~~~~~~illits~~~p~~l~~~~~~L~sRl~~g~~~--~l~~pd~e~~~~iL~ 171 (229)
T PRK06893 94 LVCLDDLQAVIGNEEWELAIFDLFNRIKEQGKTLLLISADCSPHALSIKLPDLASRLTWGEIY--QLNDLTDEQKIIVLQ 171 (229)
T ss_pred EEEEeChhhhcCChHHHHHHHHHHHHHHHcCCcEEEEeCCCChHHccccchhHHHHHhcCCee--eCCCCCHHHHHHHHH
Confidence 89999998632 245653 22222221 23555654 4443 3555555544444 499999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 329 NHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
++++..+-.- -+++.+-|++++.|..-++..+-..|
T Consensus 172 ~~a~~~~l~l----~~~v~~~L~~~~~~d~r~l~~~l~~l 207 (229)
T PRK06893 172 RNAYQRGIEL----SDEVANFLLKRLDRDMHTLFDALDLL 207 (229)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 9986443211 26677889999988776665544433
No 42
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.58 E-value=5e-09 Score=117.64 Aligned_cols=105 Identities=32% Similarity=0.431 Sum_probs=76.7
Q ss_pred hhhccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccc
Q 000594 563 SDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNL 642 (1402)
Q Consensus 563 ~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L 642 (1402)
+..+..|-.|..|.|..|.+..||..++++..|.||+|+.|++..+|..++.|+ |+.|-+++| .++.+|..|+.+.+|
T Consensus 91 p~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNN-kl~~lp~~ig~~~tl 168 (722)
T KOG0532|consen 91 PEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNN-KLTSLPEEIGLLPTL 168 (722)
T ss_pred chHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecC-ccccCCcccccchhH
Confidence 333445556677777777777777777777777777777777777777777765 777777776 467777777777777
Q ss_pred ccccccCcccccccccCccccccccccc
Q 000594 643 HHLDIEGAYQLCELPLGMKELKCLRTLT 670 (1402)
Q Consensus 643 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1402)
.+|+.+.|. +..+|..++.|.+|+.|.
T Consensus 169 ~~ld~s~ne-i~slpsql~~l~slr~l~ 195 (722)
T KOG0532|consen 169 AHLDVSKNE-IQSLPSQLGYLTSLRDLN 195 (722)
T ss_pred HHhhhhhhh-hhhchHHhhhHHHHHHHH
Confidence 777777776 777777777777777664
No 43
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=98.57 E-value=4.2e-07 Score=92.87 Aligned_cols=183 Identities=19% Similarity=0.187 Sum_probs=96.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+|||.+.-++.+.-++......+ ..+..+.+||++|+||||||.-+++. ....|. +.+.. ..+-..-+..++.
T Consensus 24 ~efiGQ~~l~~~l~i~i~aa~~r~-~~l~h~lf~GPPG~GKTTLA~IIA~e-~~~~~~---~~sg~-~i~k~~dl~~il~ 97 (233)
T PF05496_consen 24 DEFIGQEHLKGNLKILIRAAKKRG-EALDHMLFYGPPGLGKTTLARIIANE-LGVNFK---ITSGP-AIEKAGDLAAILT 97 (233)
T ss_dssp CCS-S-HHHHHHHHHHHHHHHCTT-S---EEEEESSTTSSHHHHHHHHHHH-CT--EE---EEECC-C--SCHHHHHHHH
T ss_pred HHccCcHHHHhhhHHHHHHHHhcC-CCcceEEEECCCccchhHHHHHHHhc-cCCCeE---eccch-hhhhHHHHHHHHH
Confidence 579999998888655554321111 45667889999999999999999986 444442 22211 1000011111222
Q ss_pred HhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCC--------CC-----------CCcEEEE
Q 000594 234 SITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMA--------GA-----------PGSRIIV 294 (1402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~--------~~-----------~gs~iiv 294 (1402)
. + +++-+|++|.++.-+..+-+.+..++-+ .+ +=+-|=.
T Consensus 98 ~---------------------l-~~~~ILFIDEIHRlnk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligA 155 (233)
T PF05496_consen 98 N---------------------L-KEGDILFIDEIHRLNKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGA 155 (233)
T ss_dssp T------------------------TT-EEEECTCCC--HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEE
T ss_pred h---------------------c-CCCcEEEEechhhccHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeee
Confidence 1 1 2344666677755333222222222211 11 1234557
Q ss_pred EccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 295 TTRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 295 TtR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
|||...+...+...-.....++.++.+|-.++..+.+-.-+- +--++.+.+|++++.|-|--+.-+-...
T Consensus 156 TTr~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i----~i~~~~~~~Ia~rsrGtPRiAnrll~rv 225 (233)
T PF05496_consen 156 TTRAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNI----EIDEDAAEEIARRSRGTPRIANRLLRRV 225 (233)
T ss_dssp ESSGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-----EE-HHHHHHHHHCTTTSHHHHHHHHHHH
T ss_pred eccccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCC----CcCHHHHHHHHHhcCCChHHHHHHHHHH
Confidence 899866665555544444569999999999999887743221 2236789999999999996554444433
No 44
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=98.56 E-value=7.9e-07 Score=92.21 Aligned_cols=190 Identities=15% Similarity=0.135 Sum_probs=101.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+|||.+.-++++.-++......+ ..+-.+.++|++|.||||||.-+++.. ...+. ++......-..-+..++.
T Consensus 26 ~efiGQ~~vk~~L~ifI~AAk~r~-e~lDHvLl~GPPGlGKTTLA~IIA~Em-gvn~k----~tsGp~leK~gDlaaiLt 99 (332)
T COG2255 26 DEFIGQEKVKEQLQIFIKAAKKRG-EALDHVLLFGPPGLGKTTLAHIIANEL-GVNLK----ITSGPALEKPGDLAAILT 99 (332)
T ss_pred HHhcChHHHHHHHHHHHHHHHhcC-CCcCeEEeeCCCCCcHHHHHHHHHHHh-cCCeE----ecccccccChhhHHHHHh
Confidence 579999999998877775543333 667789999999999999999999863 32221 111111111111222222
Q ss_pred HhcCCCC-CcCchHHH----HHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCC
Q 000594 234 SITLSPC-DLKDLNSV----QLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSG 308 (1402)
Q Consensus 234 ~~~~~~~-~~~~~~~~----~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~ 308 (1402)
.+....- =.+++..+ .+.+.-.+.+-+.=|++.--... ..+.-.+++ =+-|=.|||...+.......
T Consensus 100 ~Le~~DVLFIDEIHrl~~~vEE~LYpaMEDf~lDI~IG~gp~A-----rsv~ldLpp---FTLIGATTr~G~lt~PLrdR 171 (332)
T COG2255 100 NLEEGDVLFIDEIHRLSPAVEEVLYPAMEDFRLDIIIGKGPAA-----RSIRLDLPP---FTLIGATTRAGMLTNPLRDR 171 (332)
T ss_pred cCCcCCeEEEehhhhcChhHHHHhhhhhhheeEEEEEccCCcc-----ceEeccCCC---eeEeeeccccccccchhHHh
Confidence 2221100 00111111 11122222233333333222111 011112222 23355799976655544433
Q ss_pred cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 309 KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 309 ~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
-.....++..+.+|-.++..+.|..-+-.. -++.+.+|+++..|-|--.
T Consensus 172 FGi~~rlefY~~~eL~~Iv~r~a~~l~i~i----~~~~a~eIA~rSRGTPRIA 220 (332)
T COG2255 172 FGIIQRLEFYTVEELEEIVKRSAKILGIEI----DEEAALEIARRSRGTPRIA 220 (332)
T ss_pred cCCeeeeecCCHHHHHHHHHHHHHHhCCCC----ChHHHHHHHHhccCCcHHH
Confidence 333345888999999999988873222211 2567889999999999543
No 45
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.54 E-value=4.1e-08 Score=98.70 Aligned_cols=81 Identities=31% Similarity=0.372 Sum_probs=20.5
Q ss_pred CCCcccEEEeccccccccccccc-ccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhh-cccccccc
Q 000594 568 KCKKLRVLSLGRYLITEVPVSIG-CLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIG-NLVNLHHL 645 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~-~L~~L~~L 645 (1402)
+...+|.|+|++|.|+.|. .++ .+.+|+.|+|++|.|+.++ .+..|++|++|++++|. +..++..+. .+++|++|
T Consensus 17 n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~-I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 17 NPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNR-ISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp --------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS----S-CHHHHHH-TT--EE
T ss_pred ccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCC-CCccccchHHhCCcCCEE
Confidence 3345566666666666653 344 4566666666666666663 46666666666666663 444544442 46666666
Q ss_pred cccCcc
Q 000594 646 DIEGAY 651 (1402)
Q Consensus 646 ~l~~~~ 651 (1402)
++++|.
T Consensus 94 ~L~~N~ 99 (175)
T PF14580_consen 94 YLSNNK 99 (175)
T ss_dssp E-TTS-
T ss_pred ECcCCc
Confidence 666665
No 46
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.52 E-value=3.5e-06 Score=97.83 Aligned_cols=191 Identities=15% Similarity=0.167 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|.+..++.+.+.+... .-...+.++|+.|+||||+|+.+++... ...... .........+++.
T Consensus 16 ~~iiGq~~~~~~l~~~~~~~-----~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~-------~pc~~c~~c~~~~ 83 (363)
T PRK14961 16 RDIIGQKHIVTAISNGLSLG-----RIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITS-------NPCRKCIICKEIE 83 (363)
T ss_pred hhccChHHHHHHHHHHHHcC-----CCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCC-------CCCCCCHHHHHHh
Confidence 46899999999999888653 2235678999999999999999987532 111100 0000001111111
Q ss_pred HHhcC-----CC---CCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhh
Q 000594 233 ESITL-----SP---CDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVA 302 (1402)
Q Consensus 233 ~~~~~-----~~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 302 (1402)
..... .. ....+..++...+... ..+++-++|+|++..-....++.+...+.......++|++|.+. .+.
T Consensus 84 ~~~~~d~~~~~~~~~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~~~a~naLLk~lEe~~~~~~fIl~t~~~~~l~ 163 (363)
T PRK14961 84 KGLCLDLIEIDAASRTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLSRHSFNALLKTLEEPPQHIKFILATTDVEKIP 163 (363)
T ss_pred cCCCCceEEecccccCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEcCChHhhh
Confidence 10000 00 0011111111111110 12456699999996655556777777776555667777766543 333
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
..... ....+++++++.++..+.+.+.+-..+... -.+.++.|++.++|.|-.+
T Consensus 164 ~tI~S-Rc~~~~~~~l~~~el~~~L~~~~~~~g~~i----~~~al~~ia~~s~G~~R~a 217 (363)
T PRK14961 164 KTILS-RCLQFKLKIISEEKIFNFLKYILIKESIDT----DEYALKLIAYHAHGSMRDA 217 (363)
T ss_pred HHHHh-hceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 22221 234567999999999988887664322111 1456778999999988543
No 47
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=98.52 E-value=7.5e-06 Score=98.44 Aligned_cols=196 Identities=16% Similarity=0.151 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++||.+..++.|.+++.... -.+.+.++|..|+||||+|+.+.+.... ..++ +..+..-...+.|.
T Consensus 16 dEVIGQe~Vv~~L~~aL~~gR-----L~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~-------~~PCG~C~sCr~I~ 83 (830)
T PRK07003 16 ASLVGQEHVVRALTHALDGGR-----LHHAYLFTGTRGVGKTTLSRIFAKALNCETGVT-------SQPCGVCRACREID 83 (830)
T ss_pred HHHcCcHHHHHHHHHHHhcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCccCCC-------CCCCcccHHHHHHh
Confidence 468999999999999986532 2346679999999999999998875421 1111 01111111122221
Q ss_pred HH-----hcCCCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh-hh
Q 000594 233 ES-----ITLSPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VA 302 (1402)
Q Consensus 233 ~~-----~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~ 302 (1402)
.. +..........+++...+... ..++.-++|||++..-+...|..++..+-.-..+.++|+||++.. +.
T Consensus 84 ~G~h~DviEIDAas~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT~~A~NALLKtLEEPP~~v~FILaTtd~~KIp 163 (830)
T PRK07003 84 EGRFVDYVEMDAASNRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLTNHAFNAMLKTLEEPPPHVKFILATTDPQKIP 163 (830)
T ss_pred cCCCceEEEecccccccHHHHHHHHHHHHhccccCCceEEEEeChhhCCHHHHHHHHHHHHhcCCCeEEEEEECChhhcc
Confidence 10 000000011122222222211 124556889999977666778888777765556778787777643 32
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHh
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP-LAARALGG 366 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 366 (1402)
..+. .....+.+++++.++..+.+.+.+-.++-.. -.+..+.|++.++|.. -|+..+-.
T Consensus 164 ~TIr-SRCq~f~Fk~Ls~eeIv~~L~~Il~~EgI~i----d~eAL~lIA~~A~GsmRdALsLLdQ 223 (830)
T PRK07003 164 VTVL-SRCLQFNLKQMPAGHIVSHLERILGEERIAF----EPQALRLLARAAQGSMRDALSLTDQ 223 (830)
T ss_pred chhh-hheEEEecCCcCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 2221 1235567999999999999887763322111 2566788999999865 45555433
No 48
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.51 E-value=7.2e-06 Score=97.59 Aligned_cols=193 Identities=15% Similarity=0.118 Sum_probs=111.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.++||.+..+..|.+++.... -.+.+.++|+.|+||||+|+.+++.....+ |+.. ..+..-...+.+..
T Consensus 15 ddVIGQe~vv~~L~~aI~~gr-----l~HAyLF~GPpGvGKTTlAriLAK~LnC~~-----~~~~-~pCg~C~sC~~I~~ 83 (702)
T PRK14960 15 NELVGQNHVSRALSSALERGR-----LHHAYLFTGTRGVGKTTIARILAKCLNCET-----GVTS-TPCEVCATCKAVNE 83 (702)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCc-----CCCC-CCCccCHHHHHHhc
Confidence 468999999999999986542 235788999999999999999887531111 1110 01111111111111
Q ss_pred HhcC-----CCCCcCchHHHHHHHHH----HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhh
Q 000594 234 SITL-----SPCDLKDLNSVQLKLKE----AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVAS 303 (1402)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~ 303 (1402)
.-.. ........+++...+.. -..+++-++|+|++..-+......+...+.....+.++|++|.+. .+..
T Consensus 84 g~hpDviEIDAAs~~~VddIReli~~~~y~P~~gk~KV~IIDEVh~LS~~A~NALLKtLEEPP~~v~FILaTtd~~kIp~ 163 (702)
T PRK14960 84 GRFIDLIEIDAASRTKVEDTRELLDNVPYAPTQGRFKVYLIDEVHMLSTHSFNALLKTLEEPPEHVKFLFATTDPQKLPI 163 (702)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhcCCCCcEEEEEECChHhhhH
Confidence 0000 00001112222211111 123566789999997655566777777665555667777777653 2322
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
... .....+++++++.++..+.+.+.+-..+... -.+....|++.++|.+-.+.
T Consensus 164 TIl-SRCq~feFkpLs~eEI~k~L~~Il~kEgI~i----d~eAL~~IA~~S~GdLRdAL 217 (702)
T PRK14960 164 TVI-SRCLQFTLRPLAVDEITKHLGAILEKEQIAA----DQDAIWQIAESAQGSLRDAL 217 (702)
T ss_pred HHH-HhhheeeccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 211 2234566999999999988887764332221 25567789999999875443
No 49
>PRK04195 replication factor C large subunit; Provisional
Probab=98.49 E-value=1.7e-05 Score=96.14 Aligned_cols=248 Identities=16% Similarity=0.133 Sum_probs=138.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.++.++++.+|+.....+ ...+.+.|+|++|+||||+|++++++. .|+ .+-+..++..+. ..+..++.
T Consensus 14 ~dlvg~~~~~~~l~~~l~~~~~g--~~~~~lLL~GppG~GKTtla~ala~el---~~~-~ielnasd~r~~-~~i~~~i~ 86 (482)
T PRK04195 14 SDVVGNEKAKEQLREWIESWLKG--KPKKALLLYGPPGVGKTSLAHALANDY---GWE-VIELNASDQRTA-DVIERVAG 86 (482)
T ss_pred HHhcCCHHHHHHHHHHHHHHhcC--CCCCeEEEECCCCCCHHHHHHHHHHHc---CCC-EEEEcccccccH-HHHHHHHH
Confidence 46899999999999998653321 225789999999999999999998863 122 222333432222 22233322
Q ss_pred HhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCCh----hhHHHhhcccCCCCCCcEEEEEccchh-hhh-hcCC
Q 000594 234 SITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERY----DLWQALKSPFMAGAPGSRIIVTTRSMD-VAS-TMGS 307 (1402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~----~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~-~~~~ 307 (1402)
...... .....++-+||+|++..-.. ..+..+...+.. .+..||+|+.+.. ... ...
T Consensus 87 ~~~~~~--------------sl~~~~~kvIiIDEaD~L~~~~d~~~~~aL~~~l~~--~~~~iIli~n~~~~~~~k~Lr- 149 (482)
T PRK04195 87 EAATSG--------------SLFGARRKLILLDEVDGIHGNEDRGGARAILELIKK--AKQPIILTANDPYDPSLRELR- 149 (482)
T ss_pred HhhccC--------------cccCCCCeEEEEecCcccccccchhHHHHHHHHHHc--CCCCEEEeccCccccchhhHh-
Confidence 221100 00113678999999955321 234555554442 3344666664321 111 111
Q ss_pred CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCC---ChhHHHHHhhhh
Q 000594 308 GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKE---RVDEWRTILDSK 384 (1402)
Q Consensus 308 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~---~~~~w~~~~~~~ 384 (1402)
.....+++++++.++....+.+.+...+.... .++...|++.++|..-.+......+.... +.+....+..
T Consensus 150 sr~~~I~f~~~~~~~i~~~L~~i~~~egi~i~----~eaL~~Ia~~s~GDlR~ain~Lq~~a~~~~~it~~~v~~~~~-- 223 (482)
T PRK04195 150 NACLMIEFKRLSTRSIVPVLKRICRKEGIECD----DEALKEIAERSGGDLRSAINDLQAIAEGYGKLTLEDVKTLGR-- 223 (482)
T ss_pred ccceEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHHHHHHhcCCCCCcHHHHHHhhc--
Confidence 12345669999999998888877643332221 46778899999997766654444343321 1222222221
Q ss_pred cccCCCCCChhHHHHHHhc-cCcHHHHHHHhHhccCCCCccccHHHHHHHHHHhcCccc
Q 000594 385 IWNLQDKTEIPSVLKLSYH-HLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQ 442 (1402)
Q Consensus 385 ~~~~~~~~~i~~~l~~sy~-~L~~~~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~ 442 (1402)
.....+++.++..-+. .=+......+..+ .++. ..+-.|+.|.+...
T Consensus 224 ---~d~~~~if~~l~~i~~~k~~~~a~~~~~~~-------~~~~-~~i~~~l~en~~~~ 271 (482)
T PRK04195 224 ---RDREESIFDALDAVFKARNADQALEASYDV-------DEDP-DDLIEWIDENIPKE 271 (482)
T ss_pred ---CCCCCCHHHHHHHHHCCCCHHHHHHHHHcc-------cCCH-HHHHHHHHhccccc
Confidence 1123467777776555 3333444333222 1222 45778999999864
No 50
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.48 E-value=7.9e-09 Score=116.06 Aligned_cols=174 Identities=22% Similarity=0.221 Sum_probs=125.4
Q ss_pred CCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccc
Q 000594 568 KCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDI 647 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l 647 (1402)
.+..-...||+.|++.++|..++.+..|..|.|.+|.|..+|..+++|..|.+|||+.| .+..+|..++.|. |+.|-+
T Consensus 73 ~ltdt~~aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~N-qlS~lp~~lC~lp-Lkvli~ 150 (722)
T KOG0532|consen 73 DLTDTVFADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSN-QLSHLPDGLCDLP-LKVLIV 150 (722)
T ss_pred cccchhhhhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccc-hhhcCChhhhcCc-ceeEEE
Confidence 34455678999999999999999999999999999999999999999999999999999 5788999998876 899999
Q ss_pred cCcccccccccCcccccccccccceecCCCCCCChhccccccccCceEEEeCccCcCChhhhhhhcccCCCCCCeeEEEe
Q 000594 648 EGAYQLCELPLGMKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKLREKNDLEVLKLEW 727 (1402)
Q Consensus 648 ~~~~~l~~lp~~i~~L~~L~~L~~~~~~~~~~~~~~~L~~L~~L~~~L~~~~l~~~~~~~~~~~~~l~~l~~L~~L~l~~ 727 (1402)
++|+ ++.+|..|+.+..|.+|+...+...+ ...++..|. .|+.|.+.-
T Consensus 151 sNNk-l~~lp~~ig~~~tl~~ld~s~nei~s--lpsql~~l~-----------------------------slr~l~vrR 198 (722)
T KOG0532|consen 151 SNNK-LTSLPEEIGLLPTLAHLDVSKNEIQS--LPSQLGYLT-----------------------------SLRDLNVRR 198 (722)
T ss_pred ecCc-cccCCcccccchhHHHhhhhhhhhhh--chHHhhhHH-----------------------------HHHHHHHhh
Confidence 9887 99999999988888888643322111 112222222 222222221
Q ss_pred ecCCCCCCcChHHHHHHhhhcCCCCCccEEEEEeeCCCCCCCCcCCCcccceeEEEEecCCC
Q 000594 728 RARGDGDSVDEDREKNILDMLKPHCKIKRLEIHSYGGTRFPSWVGDSSFSKVAVLILRNCQR 789 (1402)
Q Consensus 728 ~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~l~~L~~L~L~~~~~ 789 (1402)
+ ....+++.+. .-.|..|+++.|.+..+|-.+. .+..|++|.|.+|..
T Consensus 199 n-----------~l~~lp~El~-~LpLi~lDfScNkis~iPv~fr--~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 199 N-----------HLEDLPEELC-SLPLIRLDFSCNKISYLPVDFR--KMRHLQVLQLENNPL 246 (722)
T ss_pred h-----------hhhhCCHHHh-CCceeeeecccCceeecchhhh--hhhhheeeeeccCCC
Confidence 1 1122333333 2346677777777777776664 467777777777763
No 51
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.47 E-value=1.2e-07 Score=113.16 Aligned_cols=104 Identities=37% Similarity=0.491 Sum_probs=92.2
Q ss_pred ccCCCcccEEEecccccccccccccccc-cccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccccc
Q 000594 566 LPKCKKLRVLSLGRYLITEVPVSIGCLK-HLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHH 644 (1402)
Q Consensus 566 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~-~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~ 644 (1402)
...++.+..|++.+|.+..+|...+.+. +|++|++++|.+..+|..++.+++|+.|++++| .+..+|...+.+.+|+.
T Consensus 112 ~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N-~l~~l~~~~~~~~~L~~ 190 (394)
T COG4886 112 LLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFN-DLSDLPKLLSNLSNLNN 190 (394)
T ss_pred hhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCc-hhhhhhhhhhhhhhhhh
Confidence 3445789999999999999998888885 999999999999999999999999999999999 57888888889999999
Q ss_pred ccccCcccccccccCcccccccccccc
Q 000594 645 LDIEGAYQLCELPLGMKELKCLRTLTN 671 (1402)
Q Consensus 645 L~l~~~~~l~~lp~~i~~L~~L~~L~~ 671 (1402)
|++++|. +..+|..++.+..|++|..
T Consensus 191 L~ls~N~-i~~l~~~~~~~~~L~~l~~ 216 (394)
T COG4886 191 LDLSGNK-ISDLPPEIELLSALEELDL 216 (394)
T ss_pred eeccCCc-cccCchhhhhhhhhhhhhh
Confidence 9999998 8899987777777887764
No 52
>PRK13342 recombination factor protein RarA; Reviewed
Probab=98.47 E-value=2.2e-06 Score=101.56 Aligned_cols=179 Identities=18% Similarity=0.170 Sum_probs=103.8
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKAR---ILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.++||++..+.. +.+++.. .....+.++|++|+||||+|+.+++. .... |+.++.......-.+.
T Consensus 12 ~d~vGq~~~v~~~~~L~~~i~~------~~~~~ilL~GppGtGKTtLA~~ia~~-~~~~-----~~~l~a~~~~~~~ir~ 79 (413)
T PRK13342 12 DEVVGQEHLLGPGKPLRRMIEA------GRLSSMILWGPPGTGKTTLARIIAGA-TDAP-----FEALSAVTSGVKDLRE 79 (413)
T ss_pred HHhcCcHHHhCcchHHHHHHHc------CCCceEEEECCCCCCHHHHHHHHHHH-hCCC-----EEEEecccccHHHHHH
Confidence 458888877655 6666643 23346788999999999999999875 2222 2333222111111122
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE--Eccchh--hhhhc
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV--TTRSMD--VASTM 305 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~--v~~~~ 305 (1402)
+++ .... ...+++.+|++|+++.-.....+.+...+. .|..++| ||.+.. +...+
T Consensus 80 ii~-----------------~~~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le---~~~iilI~att~n~~~~l~~aL 139 (413)
T PRK13342 80 VIE-----------------EARQRRSAGRRTILFIDEIHRFNKAQQDALLPHVE---DGTITLIGATTENPSFEVNPAL 139 (413)
T ss_pred HHH-----------------HHHHhhhcCCceEEEEechhhhCHHHHHHHHHHhh---cCcEEEEEeCCCChhhhccHHH
Confidence 222 1111 124678899999997765555565555443 3455554 344322 11111
Q ss_pred CCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHh
Q 000594 306 GSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGG 366 (1402)
Q Consensus 306 ~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 366 (1402)
.. ....+.+++++.++.++++.+.+....... .+--.+..+.|++.++|.|..+.-+..
T Consensus 140 ~S-R~~~~~~~~ls~e~i~~lL~~~l~~~~~~~-i~i~~~al~~l~~~s~Gd~R~aln~Le 198 (413)
T PRK13342 140 LS-RAQVFELKPLSEEDIEQLLKRALEDKERGL-VELDDEALDALARLANGDARRALNLLE 198 (413)
T ss_pred hc-cceeeEeCCCCHHHHHHHHHHHHHHhhcCC-CCCCHHHHHHHHHhCCCCHHHHHHHHH
Confidence 11 123456999999999999987653211100 012256678899999999976654433
No 53
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.46 E-value=1e-06 Score=105.28 Aligned_cols=197 Identities=16% Similarity=0.107 Sum_probs=114.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|.+..++.|..++... .-...+.++|++|+||||+|+.+++... ...++...|.|.+... +........
T Consensus 14 ~dvvGq~~v~~~L~~~i~~~-----~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~-i~~~~h~dv 87 (504)
T PRK14963 14 DEVVGQEHVKEVLLAALRQG-----RLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLA-VRRGAHPDV 87 (504)
T ss_pred HHhcChHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHH-HhcCCCCce
Confidence 46899999988888888653 2235679999999999999999987642 2223323343321100 000000000
Q ss_pred HHhcCC-CCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCc
Q 000594 233 ESITLS-PCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGK 309 (1402)
Q Consensus 233 ~~~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~ 309 (1402)
..+... .....++.++...+.. -..+++-++|+|+++......++.+...+........+|++|.. ..+...+.. .
T Consensus 88 ~el~~~~~~~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~ls~~a~naLLk~LEep~~~t~~Il~t~~~~kl~~~I~S-R 166 (504)
T PRK14963 88 LEIDAASNNSVEDVRDLREKVLLAPLRGGRKVYILDEAHMMSKSAFNALLKTLEEPPEHVIFILATTEPEKMPPTILS-R 166 (504)
T ss_pred EEecccccCCHHHHHHHHHHHhhccccCCCeEEEEECccccCHHHHHHHHHHHHhCCCCEEEEEEcCChhhCChHHhc-c
Confidence 000000 0011112222222221 12356679999999776666788888777655455565555543 333333322 2
Q ss_pred ceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 310 NYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 310 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
...+++.+++.++..+.+.+.+-..+... -.+....|++.++|.+--+
T Consensus 167 c~~~~f~~ls~~el~~~L~~i~~~egi~i----~~~Al~~ia~~s~GdlR~a 214 (504)
T PRK14963 167 TQHFRFRRLTEEEIAGKLRRLLEAEGREA----EPEALQLVARLADGAMRDA 214 (504)
T ss_pred eEEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 34566999999999999988774433221 2567788999999988544
No 54
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.44 E-value=1.7e-07 Score=94.30 Aligned_cols=106 Identities=31% Similarity=0.385 Sum_probs=55.7
Q ss_pred CCCcccEEEecccccccccccccccccccceeccCccccccchhh-hcCCCCcEEecCCccccccCc--hhhhccccccc
Q 000594 568 KCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVI-TSLFNLEILILSNCWFLLKLP--SSIGNLVNLHH 644 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~LdLs~~~~~~~lP--~~i~~L~~L~~ 644 (1402)
.+.+|++|+|++|.|+.++ .+..+++|++|++++|.|+.+++.+ ..+++|+.|++++|.+ ..+- ..+..+++|++
T Consensus 40 ~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L~L~~N~I-~~l~~l~~L~~l~~L~~ 117 (175)
T PF14580_consen 40 TLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQELYLSNNKI-SDLNELEPLSSLPKLRV 117 (175)
T ss_dssp T-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EEE-TTS----SCCCCGGGGG-TT--E
T ss_pred hhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEEECcCCcC-CChHHhHHHHcCCCcce
Confidence 5679999999999999986 5888999999999999999998766 4799999999999954 3332 34788999999
Q ss_pred ccccCccccccccc----CcccccccccccceecCC
Q 000594 645 LDIEGAYQLCELPL----GMKELKCLRTLTNFIVGK 676 (1402)
Q Consensus 645 L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~~ 676 (1402)
|++.+|. +...+. -+..+++|+.|+...+..
T Consensus 118 L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~~ 152 (175)
T PF14580_consen 118 LSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVTE 152 (175)
T ss_dssp EE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETTS
T ss_pred eeccCCc-ccchhhHHHHHHHHcChhheeCCEEccH
Confidence 9999998 555443 267888999998655543
No 55
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=98.43 E-value=7.2e-06 Score=93.61 Aligned_cols=179 Identities=18% Similarity=0.198 Sum_probs=115.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-----cccccCceeEEEe-CCCCCHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-----LTEAFEPKAWVCV-SHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-----~~~~f~~~~wv~~-~~~~~~~~~ 227 (1402)
.+++|.+..++.+..++... .-.+...++|+.|+||||+|+.+++.. ...|+|...|... +....+.+
T Consensus 4 ~~i~g~~~~~~~l~~~~~~~-----~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~~i~v~~- 77 (313)
T PRK05564 4 HTIIGHENIKNRIKNSIIKN-----RFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKKSIGVDD- 77 (313)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCCCCCHHH-
Confidence 35789999999999998653 233577899999999999999998743 2345555555442 22223333
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhh-hhcC
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVA-STMG 306 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~-~~~~ 306 (1402)
.+++.+.+...+ ..+++-++|+|++..-+...|+.+...+..-..++.+|++|.+.+.. ....
T Consensus 78 ir~~~~~~~~~p----------------~~~~~kv~iI~~ad~m~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~TI~ 141 (313)
T PRK05564 78 IRNIIEEVNKKP----------------YEGDKKVIIIYNSEKMTEQAQNAFLKTIEEPPKGVFIILLCENLEQILDTIK 141 (313)
T ss_pred HHHHHHHHhcCc----------------ccCCceEEEEechhhcCHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHH
Confidence 223333332111 12455677777775556678899998888777789988888765422 1111
Q ss_pred CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 307 SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 307 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
.....+++.++++++....+.+... . . -.+.++.++..++|.|..+..
T Consensus 142 -SRc~~~~~~~~~~~~~~~~l~~~~~-~---~----~~~~~~~l~~~~~g~~~~a~~ 189 (313)
T PRK05564 142 -SRCQIYKLNRLSKEEIEKFISYKYN-D---I----KEEEKKSAIAFSDGIPGKVEK 189 (313)
T ss_pred -hhceeeeCCCcCHHHHHHHHHHHhc-C---C----CHHHHHHHHHHcCCCHHHHHH
Confidence 1234566999999999887765431 1 1 134467788999999865543
No 56
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=98.42 E-value=4.8e-06 Score=102.68 Aligned_cols=203 Identities=18% Similarity=0.166 Sum_probs=118.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-ccccc---CceeEEEeCCC---CCHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAF---EPKAWVCVSHD---FDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f---~~~~wv~~~~~---~~~~~ 226 (1402)
++++|++..+..+.+.+.. .....+.|+|++|+||||+|+.+++.. ....+ ...-|+.+... .+...
T Consensus 154 ~~iiGqs~~~~~l~~~ia~------~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~~d~~~ 227 (615)
T TIGR02903 154 SEIVGQERAIKALLAKVAS------PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLRWDPRE 227 (615)
T ss_pred HhceeCcHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhccCCHHH
Confidence 4589999999998887743 223469999999999999999998653 22222 12346655421 12222
Q ss_pred HHHH---------------HHHHhcCCCC----------------CcCc-hHHHHHHHHHHhcCCeEEEEEeCCCcCChh
Q 000594 227 ISKA---------------ILESITLSPC----------------DLKD-LNSVQLKLKEAVFKKKFLIVLDDVWSERYD 274 (1402)
Q Consensus 227 ~~~~---------------i~~~~~~~~~----------------~~~~-~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~ 274 (1402)
+... .+...+.... +... ....+..+.+.+.++++.++-|+.|..+..
T Consensus 228 i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~Ld~~~Q~~Ll~~Le~~~v~~~~~~~~~~~~~ 307 (615)
T TIGR02903 228 VTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGELDPLLQNKLLKVLEDKRVEFSSSYYDPDDPN 307 (615)
T ss_pred HhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccCCHHHHHHHHHHHhhCeEEeecceeccCCcc
Confidence 2111 1121111100 1111 123577888999999999998888877667
Q ss_pred hHHHhhcccCCCCCCcEEEE--Eccchhh-hhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHH
Q 000594 275 LWQALKSPFMAGAPGSRIIV--TTRSMDV-ASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVV 351 (1402)
Q Consensus 275 ~~~~~~~~l~~~~~gs~iiv--TtR~~~v-~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~ 351 (1402)
.|+.+...+....+...|++ ||++... ...+.. ....+.+.+++.+|.++++.+.+-.... .. -.++.+.|+
T Consensus 308 ~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrS-R~~~i~~~pls~edi~~Il~~~a~~~~v-~l---s~eal~~L~ 382 (615)
T TIGR02903 308 VPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRS-RCAEVFFEPLTPEDIALIVLNAAEKINV-HL---AAGVEELIA 382 (615)
T ss_pred cchhhhhhcccCccceEEEEEeccccccccCHHHHh-ceeEEEeCCCCHHHHHHHHHHHHHHcCC-CC---CHHHHHHHH
Confidence 78888777766655555555 5665432 222111 1234558999999999999887632211 11 133444455
Q ss_pred HHcCCChHHHHHHHhh
Q 000594 352 EKCKGLPLAARALGGL 367 (1402)
Q Consensus 352 ~~~~g~PLai~~~~~~ 367 (1402)
+.+..-+-|+..++..
T Consensus 383 ~ys~~gRraln~L~~~ 398 (615)
T TIGR02903 383 RYTIEGRKAVNILADV 398 (615)
T ss_pred HCCCcHHHHHHHHHHH
Confidence 5444334555544433
No 57
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=98.42 E-value=1.3e-06 Score=95.42 Aligned_cols=155 Identities=21% Similarity=0.206 Sum_probs=90.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHH-HHHhc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKL-KEAVF 257 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l-~~~l~ 257 (1402)
+.+.-+.+||++|+||||||+.+... ....| ..++-..+-.+-++.++ +.- +....
T Consensus 46 ~~l~SmIl~GPPG~GKTTlA~liA~~-~~~~f-----~~~sAv~~gvkdlr~i~-----------------e~a~~~~~~ 102 (436)
T COG2256 46 GHLHSMILWGPPGTGKTTLARLIAGT-TNAAF-----EALSAVTSGVKDLREII-----------------EEARKNRLL 102 (436)
T ss_pred CCCceeEEECCCCCCHHHHHHHHHHh-hCCce-----EEeccccccHHHHHHHH-----------------HHHHHHHhc
Confidence 45567789999999999999998874 33333 33333322222222222 222 22334
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE--Eccchhh--hhhcCCCcceeecccCCChhhHHHHHHHhhcC
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV--TTRSMDV--ASTMGSGKNYELELKLLSDDDRWSVFVNHAFE 333 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v--~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~ 333 (1402)
+++.+|++|.|+.-+..+-+.+ +|...+|.-|+| ||.++.. -....+ ....+++++|+.++-.+++.+-+..
T Consensus 103 gr~tiLflDEIHRfnK~QQD~l---Lp~vE~G~iilIGATTENPsF~ln~ALlS-R~~vf~lk~L~~~di~~~l~ra~~~ 178 (436)
T COG2256 103 GRRTILFLDEIHRFNKAQQDAL---LPHVENGTIILIGATTENPSFELNPALLS-RARVFELKPLSSEDIKKLLKRALLD 178 (436)
T ss_pred CCceEEEEehhhhcChhhhhhh---hhhhcCCeEEEEeccCCCCCeeecHHHhh-hhheeeeecCCHHHHHHHHHHHHhh
Confidence 8999999999976443333333 444557777776 5555331 111111 2234559999999999999884422
Q ss_pred CCCCCC--Cch-HHHHHHHHHHHcCCChHH
Q 000594 334 GRDAGT--HGN-FESARQRVVEKCKGLPLA 360 (1402)
Q Consensus 334 ~~~~~~--~~~-~~~~~~~i~~~~~g~PLa 360 (1402)
....-. ... -+++..-+++.++|---+
T Consensus 179 ~~rgl~~~~~~i~~~a~~~l~~~s~GD~R~ 208 (436)
T COG2256 179 EERGLGGQIIVLDEEALDYLVRLSNGDARR 208 (436)
T ss_pred hhcCCCcccccCCHHHHHHHHHhcCchHHH
Confidence 211110 111 245667788888886544
No 58
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.41 E-value=6.6e-07 Score=87.94 Aligned_cols=116 Identities=18% Similarity=0.239 Sum_probs=79.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccccc----ccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHh
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTE----AFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAV 256 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 256 (1402)
.+++.|+|.+|+|||++++.+.++.... .-..++|+.+....+...+...++++++.......+..++...+.+.+
T Consensus 4 ~~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l 83 (131)
T PF13401_consen 4 QRILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDAL 83 (131)
T ss_dssp ---EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHH
T ss_pred CcccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHH
Confidence 3689999999999999999998763211 123466999888889999999999999987665455666677777777
Q ss_pred cCC-eEEEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccc
Q 000594 257 FKK-KFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 257 ~~k-~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
... ..+||+|++..- +.+.++.+..... ..+.+||+..+.
T Consensus 84 ~~~~~~~lviDe~~~l~~~~~l~~l~~l~~--~~~~~vvl~G~~ 125 (131)
T PF13401_consen 84 DRRRVVLLVIDEADHLFSDEFLEFLRSLLN--ESNIKVVLVGTP 125 (131)
T ss_dssp HHCTEEEEEEETTHHHHTHHHHHHHHHHTC--SCBEEEEEEESS
T ss_pred HhcCCeEEEEeChHhcCCHHHHHHHHHHHh--CCCCeEEEEECh
Confidence 654 459999999554 4444555544333 566777777664
No 59
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=98.41 E-value=7.9e-06 Score=95.38 Aligned_cols=199 Identities=19% Similarity=0.136 Sum_probs=108.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCH-HHHHH--
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDV-LRISK-- 229 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~-~~~~~-- 229 (1402)
.+++|++..++.+.+++... ..+.+.++|++|+||||+|+.+.+......+.. .+.+++++-... .....
T Consensus 15 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~~~~~~~~~~ 88 (337)
T PRK12402 15 EDILGQDEVVERLSRAVDSP------NLPHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFDQGKKYLVED 88 (337)
T ss_pred HHhcCCHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhhcchhhhhcC
Confidence 46889999999999988542 223578999999999999999987543333222 234443321100 00000
Q ss_pred -HHHHHhcCC-CCCcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh-h
Q 000594 230 -AILESITLS-PCDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-V 301 (1402)
Q Consensus 230 -~i~~~~~~~-~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v 301 (1402)
......+.. .......+.....++... .+.+-+||+||+..-..+....+...+......+++|+||.... +
T Consensus 89 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l~~~~~~~L~~~le~~~~~~~~Il~~~~~~~~ 168 (337)
T PRK12402 89 PRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEALREDAQQALRRIMEQYSRTCRFIIATRQPSKL 168 (337)
T ss_pred cchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccCCHHHHHHHHHHHHhccCCCeEEEEeCChhhC
Confidence 000000000 000001111112222211 23455899999955443444455554444445577887775432 2
Q ss_pred hhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 302 ASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 302 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
...... ....+++.+++.++..+++.+.+-..+... -.+..+.+++.++|.+-.+..
T Consensus 169 ~~~L~s-r~~~v~~~~~~~~~~~~~l~~~~~~~~~~~----~~~al~~l~~~~~gdlr~l~~ 225 (337)
T PRK12402 169 IPPIRS-RCLPLFFRAPTDDELVDVLESIAEAEGVDY----DDDGLELIAYYAGGDLRKAIL 225 (337)
T ss_pred chhhcC-CceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 222222 234566899999999998888764332221 256778889999887755543
No 60
>PF13173 AAA_14: AAA domain
Probab=98.39 E-value=1.2e-06 Score=85.01 Aligned_cols=121 Identities=25% Similarity=0.275 Sum_probs=78.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+++.|.|+.|+||||++++++.+.. ....+++++..+........ .+ ..+.+.+....++.
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~--~~~~~~yi~~~~~~~~~~~~----------------~~-~~~~~~~~~~~~~~ 63 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLL--PPENILYINFDDPRDRRLAD----------------PD-LLEYFLELIKPGKK 63 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhc--ccccceeeccCCHHHHHHhh----------------hh-hHHHHHHhhccCCc
Confidence 5899999999999999999987633 23445666655432211000 00 22233333344788
Q ss_pred EEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhc----CCCcceeecccCCChhhH
Q 000594 262 LIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTM----GSGKNYELELKLLSDDDR 323 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~----~~~~~~~~~l~~L~~~~~ 323 (1402)
+|+||++.. ...|......+.+..+..+|++|+........- -.+....++|.||+-.|.
T Consensus 64 ~i~iDEiq~--~~~~~~~lk~l~d~~~~~~ii~tgS~~~~l~~~~~~~l~gr~~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 64 YIFIDEIQY--LPDWEDALKFLVDNGPNIKIILTGSSSSLLSKDIAESLAGRVIEIELYPLSFREF 127 (128)
T ss_pred EEEEehhhh--hccHHHHHHHHHHhccCceEEEEccchHHHhhcccccCCCeEEEEEECCCCHHHh
Confidence 999999944 467888777777766678999999886665321 122345567999987763
No 61
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.39 E-value=7.1e-06 Score=100.75 Aligned_cols=193 Identities=13% Similarity=0.122 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc-ccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++||.+..+..|.+++.... -...+.++|+.|+||||+|+.+++..... ..... .+........+.
T Consensus 16 ddIIGQe~Iv~~LknaI~~~r-----l~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~-------pCg~C~sC~~i~ 83 (944)
T PRK14949 16 EQMVGQSHVLHALTNALTQQR-----LHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTAT-------PCGVCSSCVEIA 83 (944)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCC-------CCCCchHHHHHh
Confidence 468999999999999886532 23466899999999999999998764221 11000 000000000111
Q ss_pred HH-------hcCC-CCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhh
Q 000594 233 ES-------ITLS-PCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVA 302 (1402)
Q Consensus 233 ~~-------~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 302 (1402)
.. +... .....++.++...+.. ...+++-++|+|++..-..+.++.++..+-.-....++|++|.+ ..+.
T Consensus 84 ~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~LT~eAqNALLKtLEEPP~~vrFILaTTe~~kLl 163 (944)
T PRK14949 84 QGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHMLSRSSFNALLKTLEEPPEHVKFLLATTDPQKLP 163 (944)
T ss_pred cCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhcCHHHHHHHHHHHhccCCCeEEEEECCCchhch
Confidence 00 0000 0011112222222221 12467789999999776667788877777554456666665554 4443
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
..+.. ....+++++++.++..+.+.+.+-..+-. --.+....|++.++|.|--+..
T Consensus 164 ~TIlS-RCq~f~fkpLs~eEI~~~L~~il~~EgI~----~edeAL~lIA~~S~Gd~R~ALn 219 (944)
T PRK14949 164 VTVLS-RCLQFNLKSLTQDEIGTQLNHILTQEQLP----FEAEALTLLAKAANGSMRDALS 219 (944)
T ss_pred HHHHH-hheEEeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHH
Confidence 22221 23556799999999999888766332111 1255678899999998854433
No 62
>PLN03025 replication factor C subunit; Provisional
Probab=98.36 E-value=7.7e-06 Score=93.55 Aligned_cols=183 Identities=14% Similarity=0.149 Sum_probs=104.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|.++.++.+.+++... ....+.++|++|+||||+|+.+++......|.. .+-+..++..... ..++++
T Consensus 13 ~~~~g~~~~~~~L~~~~~~~------~~~~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~~~~-~vr~~i 85 (319)
T PLN03025 13 DDIVGNEDAVSRLQVIARDG------NMPNLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDRGID-VVRNKI 85 (319)
T ss_pred HHhcCcHHHHHHHHHHHhcC------CCceEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccccHH-HHHHHH
Confidence 45889998888888776542 233467999999999999999987643333321 1112222222211 122222
Q ss_pred HHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhhhcCCCcce
Q 000594 233 ESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVASTMGSGKNY 311 (1402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~ 311 (1402)
+.+...... .-.++.-++++|++..-.......+...+......+++|+++... .+...... ...
T Consensus 86 ~~~~~~~~~-------------~~~~~~kviiiDE~d~lt~~aq~aL~~~lE~~~~~t~~il~~n~~~~i~~~L~S-Rc~ 151 (319)
T PLN03025 86 KMFAQKKVT-------------LPPGRHKIVILDEADSMTSGAQQALRRTMEIYSNTTRFALACNTSSKIIEPIQS-RCA 151 (319)
T ss_pred HHHHhcccc-------------CCCCCeEEEEEechhhcCHHHHHHHHHHHhcccCCceEEEEeCCccccchhHHH-hhh
Confidence 211100000 002456799999996655445555555454334567777766542 22221111 123
Q ss_pred eecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 312 ELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 312 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.++++++++++..+.+.+.+-..+-.-. .+....|++.++|..-.+
T Consensus 152 ~i~f~~l~~~~l~~~L~~i~~~egi~i~----~~~l~~i~~~~~gDlR~a 197 (319)
T PLN03025 152 IVRFSRLSDQEILGRLMKVVEAEKVPYV----PEGLEAIIFTADGDMRQA 197 (319)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHH
Confidence 4569999999999988877743322211 456788899998876443
No 63
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.35 E-value=1.5e-07 Score=102.99 Aligned_cols=110 Identities=21% Similarity=0.287 Sum_probs=56.4
Q ss_pred CCCCCccEEEeccCCCcccc-CCCCCCCCCceeEeccCCCCccccccccCCcCccceeeecCCCCccccc--cccc--CC
Q 000594 1228 GKLSSLQQLFLKKCPGIVFF-PEEGLSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFP--EVEK--GV 1302 (1402)
Q Consensus 1228 ~~l~~L~~L~l~~c~~l~~l-~~~~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~--~~~~--~~ 1302 (1402)
..+|+|+.|++.+|..+... .....+..|++|||++|++.+.-.....+.++.|+.|+++.|. +.++. +.+. .-
T Consensus 219 ~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Lnls~tg-i~si~~~d~~s~~kt 297 (505)
T KOG3207|consen 219 LTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLNLSSTG-IASIAEPDVESLDKT 297 (505)
T ss_pred HhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhhccccC-cchhcCCCccchhhh
Confidence 34677777777776422222 1123466777777777777654433346677777777777753 33321 1100 01
Q ss_pred cCCCcccceecccCCCcccCCc-cccCCCCCCCeeecc
Q 000594 1303 ILPTTLTSIGISDFPKLERLSS-KGFQYLVSLEHLRVI 1339 (1402)
Q Consensus 1303 ~~~~~L~~L~l~~c~~L~~l~~-~~l~~l~~L~~L~l~ 1339 (1402)
..+++|+.|.+.. |++...++ ..+..+++|+.|.+-
T Consensus 298 ~~f~kL~~L~i~~-N~I~~w~sl~~l~~l~nlk~l~~~ 334 (505)
T KOG3207|consen 298 HTFPKLEYLNISE-NNIRDWRSLNHLRTLENLKHLRIT 334 (505)
T ss_pred cccccceeeeccc-Cccccccccchhhccchhhhhhcc
Confidence 1345555555555 33332221 123345566666553
No 64
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.34 E-value=4.6e-07 Score=74.59 Aligned_cols=58 Identities=34% Similarity=0.452 Sum_probs=42.0
Q ss_pred CcccEEEeccccccccc-ccccccccccceeccCccccccc-hhhhcCCCCcEEecCCcc
Q 000594 570 KKLRVLSLGRYLITEVP-VSIGCLKHLRYLNFSNSWIQCLP-EVITSLFNLEILILSNCW 627 (1402)
Q Consensus 570 ~~Lr~L~L~~~~i~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp-~~i~~L~~L~~LdLs~~~ 627 (1402)
++|++|++++|.++.+| ..|.++++|++|++++|.++.+| ..|.++++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 35777777777777775 45677777777777777777776 357777777777777764
No 65
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=98.34 E-value=5.7e-06 Score=90.18 Aligned_cols=171 Identities=18% Similarity=0.150 Sum_probs=97.3
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCC
Q 000594 159 RDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLS 238 (1402)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 238 (1402)
.+..++++.+++.. .....+.|+|.+|+|||++|+.+++.... .....++++++.-.+ ..
T Consensus 22 ~~~~~~~l~~~~~~------~~~~~lll~G~~G~GKT~la~~~~~~~~~-~~~~~~~i~~~~~~~------~~------- 81 (226)
T TIGR03420 22 NAELLAALRQLAAG------KGDRFLYLWGESGSGKSHLLQAACAAAEE-RGKSAIYLPLAELAQ------AD------- 81 (226)
T ss_pred cHHHHHHHHHHHhc------CCCCeEEEECCCCCCHHHHHHHHHHHHHh-cCCcEEEEeHHHHHH------hH-------
Confidence 34566667766532 22357899999999999999999876322 233345555432211 00
Q ss_pred CCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChh-hHH-HhhcccCC-CCCCcEEEEEccchhh---------hhhcC
Q 000594 239 PCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYD-LWQ-ALKSPFMA-GAPGSRIIVTTRSMDV---------ASTMG 306 (1402)
Q Consensus 239 ~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~-~~~-~~~~~l~~-~~~gs~iivTtR~~~v---------~~~~~ 306 (1402)
. .+...+.+ .-+||+||+..-... .|. .+...+.. ...+.+||+||+.... ...+.
T Consensus 82 -------~----~~~~~~~~-~~lLvIDdi~~l~~~~~~~~~L~~~l~~~~~~~~~iIits~~~~~~~~~~~~~L~~r~~ 149 (226)
T TIGR03420 82 -------P----EVLEGLEQ-ADLVCLDDVEAIAGQPEWQEALFHLYNRVREAGGRLLIAGRAAPAQLPLRLPDLRTRLA 149 (226)
T ss_pred -------H----HHHhhccc-CCEEEEeChhhhcCChHHHHHHHHHHHHHHHcCCeEEEECCCChHHCCcccHHHHHHHh
Confidence 0 01111222 238999999653221 233 33332221 1234578998875321 11211
Q ss_pred CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhh
Q 000594 307 SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGL 367 (1402)
Q Consensus 307 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 367 (1402)
. ...+++++++.++...++...+-..+-. --.+..+.|++.+.|.|..+.-+...
T Consensus 150 ~--~~~i~l~~l~~~e~~~~l~~~~~~~~~~----~~~~~l~~L~~~~~gn~r~L~~~l~~ 204 (226)
T TIGR03420 150 W--GLVFQLPPLSDEEKIAALQSRAARRGLQ----LPDEVADYLLRHGSRDMGSLMALLDA 204 (226)
T ss_pred c--CeeEecCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHhccCCHHHHHHHHHH
Confidence 1 2346699999999999988765322211 12456677888899999877665433
No 66
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.33 E-value=1.2e-05 Score=95.60 Aligned_cols=199 Identities=15% Similarity=0.129 Sum_probs=112.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.++||.+..++.|.+++.... -...+.++|..|+||||+|+.+.+......-+...-+ .+..+......+.|..
T Consensus 16 ddVIGQe~vv~~L~~al~~gR-----LpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~-~~~PCG~C~sC~~I~a 89 (700)
T PRK12323 16 TTLVGQEHVVRALTHALEQQR-----LHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGI-TAQPCGQCRACTEIDA 89 (700)
T ss_pred HHHcCcHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccC-CCCCCcccHHHHHHHc
Confidence 468999999999999986542 2356789999999999999998875422100000000 0000111111111111
Q ss_pred H-----hcCCCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE-EEccchhhhh
Q 000594 234 S-----ITLSPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVAS 303 (1402)
Q Consensus 234 ~-----~~~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~ 303 (1402)
. +..........+++.+.+... ..++.-++|+|++..-+...++.++..+-.-..+.++| +||....+..
T Consensus 90 G~hpDviEIdAas~~gVDdIReLie~~~~~P~~gr~KViIIDEah~Ls~~AaNALLKTLEEPP~~v~FILaTtep~kLlp 169 (700)
T PRK12323 90 GRFVDYIEMDAASNRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHMLTNHAFNAMLKTLEEPPEHVKFILATTDPQKIPV 169 (700)
T ss_pred CCCCcceEecccccCCHHHHHHHHHHHHhchhcCCceEEEEEChHhcCHHHHHHHHHhhccCCCCceEEEEeCChHhhhh
Confidence 0 000000111122222222221 23566799999997766677888877775544555654 4554445443
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
.+.. ....+.++.++.++..+.+.+.+-..+... -.+..+.|++.++|.|.-...
T Consensus 170 TIrS-RCq~f~f~~ls~eei~~~L~~Il~~Egi~~----d~eAL~~IA~~A~Gs~RdALs 224 (700)
T PRK12323 170 TVLS-RCLQFNLKQMPPGHIVSHLDAILGEEGIAH----EVNALRLLAQAAQGSMRDALS 224 (700)
T ss_pred HHHH-HHHhcccCCCChHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 3222 234466999999999998887663222111 144567899999999865443
No 67
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.32 E-value=6.2e-06 Score=95.58 Aligned_cols=195 Identities=15% Similarity=0.046 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..+..|..++.... -...+.++|+.|+||||+|+.+++.......... ..+........+......
T Consensus 18 ~dvVGQe~iv~~L~~~i~~~r-----i~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~--~pCg~C~sC~~i~~g~~~ 90 (484)
T PRK14956 18 RDVIHQDLAIGALQNALKSGK-----IGHAYIFFGPRGVGKTTIARILAKRLNCENPIGN--EPCNECTSCLEITKGISS 90 (484)
T ss_pred HHHhChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhcCcccccCc--cccCCCcHHHHHHccCCc
Confidence 468999999999988886532 1246789999999999999999875422211100 000111111111111100
Q ss_pred Hh---cC-CCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE-EEccchhhhhhcCC
Q 000594 234 SI---TL-SPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVASTMGS 307 (1402)
Q Consensus 234 ~~---~~-~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~~~~ 307 (1402)
.+ .. .....+++.++.+.+.. ...++.-++|+|++..-..+.++.+...+-.......+| .||....+......
T Consensus 91 dviEIdaas~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~Ls~~A~NALLKtLEEPp~~viFILaTte~~kI~~TI~S 170 (484)
T PRK14956 91 DVLEIDAASNRGIENIRELRDNVKFAPMGGKYKVYIIDEVHMLTDQSFNALLKTLEEPPAHIVFILATTEFHKIPETILS 170 (484)
T ss_pred cceeechhhcccHHHHHHHHHHHHhhhhcCCCEEEEEechhhcCHHHHHHHHHHhhcCCCceEEEeecCChhhccHHHHh
Confidence 00 00 00011222233333322 124566799999997766677888877775433455544 45544444433322
Q ss_pred CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 000594 308 GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLA 360 (1402)
Q Consensus 308 ~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 360 (1402)
. ...+.+++++.++..+.+.+.+-..+-.- -.+....|++.++|.+--
T Consensus 171 R-Cq~~~f~~ls~~~i~~~L~~i~~~Egi~~----e~eAL~~Ia~~S~Gd~Rd 218 (484)
T PRK14956 171 R-CQDFIFKKVPLSVLQDYSEKLCKIENVQY----DQEGLFWIAKKGDGSVRD 218 (484)
T ss_pred h-hheeeecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCChHHH
Confidence 2 23456999999998888887764322111 255678899999998843
No 68
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=98.31 E-value=2.2e-05 Score=93.43 Aligned_cols=194 Identities=15% Similarity=0.115 Sum_probs=112.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCc-eeEEEeCCCCCHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEP-KAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~-~~wv~~~~~~~~~~~~~~i 231 (1402)
.+++|.+..+..+...+.... -.+.+.++|+.|+||||+|+.+++...... ... -.+..+... .....+
T Consensus 21 ~dliGq~~vv~~L~~ai~~~r-----i~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C----~~C~~i 91 (507)
T PRK06645 21 AELQGQEVLVKVLSYTILNDR-----LAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC----TNCISF 91 (507)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC----hHHHHH
Confidence 468999999998888775532 235788999999999999999987542111 100 000000000 111111
Q ss_pred HHHhcC-----CCCCcCchHHHHHHHHH----HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE-Eccchhh
Q 000594 232 LESITL-----SPCDLKDLNSVQLKLKE----AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDV 301 (1402)
Q Consensus 232 ~~~~~~-----~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v 301 (1402)
...... ........+++...+.. -..+++-++|+|+++.-....|+.+...+......+.+|+ ||+...+
T Consensus 92 ~~~~h~Dv~eidaas~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls~~a~naLLk~LEepp~~~vfI~aTte~~kI 171 (507)
T PRK06645 92 NNHNHPDIIEIDAASKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLSKGAFNALLKTLEEPPPHIIFIFATTEVQKI 171 (507)
T ss_pred hcCCCCcEEEeeccCCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcCHHHHHHHHHHHhhcCCCEEEEEEeCChHHh
Confidence 110000 00001112222222211 1235677899999987666778888877766555666554 5555555
Q ss_pred hhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 302 ASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 302 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
....... ...+++++++.++..+.+.+.+-..+... -.+....|++.++|.+--+
T Consensus 172 ~~tI~SR-c~~~ef~~ls~~el~~~L~~i~~~egi~i----e~eAL~~Ia~~s~GslR~a 226 (507)
T PRK06645 172 PATIISR-CQRYDLRRLSFEEIFKLLEYITKQENLKT----DIEALRIIAYKSEGSARDA 226 (507)
T ss_pred hHHHHhc-ceEEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4443322 24466999999999999988874333211 1456677999999977443
No 69
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.31 E-value=1.4e-06 Score=91.67 Aligned_cols=48 Identities=27% Similarity=0.437 Sum_probs=32.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.||||+++.+++...+..... ...+++.|+|.+|+|||+|+++++...
T Consensus 1 ~fvgR~~e~~~l~~~l~~~~~---~~~~~~ll~G~~G~GKT~ll~~~~~~~ 48 (185)
T PF13191_consen 1 QFVGREEEIERLRDLLDAAQS---GSPRNLLLTGESGSGKTSLLRALLDRL 48 (185)
T ss_dssp --TT-HHHHHHHHHTTGGTSS--------EEE-B-TTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHc---CCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 489999999999999952111 456899999999999999999988764
No 70
>PTZ00202 tuzin; Provisional
Probab=98.31 E-value=2.3e-05 Score=87.58 Aligned_cols=171 Identities=10% Similarity=0.114 Sum_probs=103.1
Q ss_pred cCCCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHH
Q 000594 149 CLTSEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 149 ~~~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~ 228 (1402)
.+.+.+.|+||+++..++...|...+. ...+++.|+|++|+|||||++.+.... . ..+++.-.. +..+++
T Consensus 257 lPa~~~~FVGReaEla~Lr~VL~~~d~---~~privvLtG~~G~GKTTLlR~~~~~l-~----~~qL~vNpr--g~eElL 326 (550)
T PTZ00202 257 APAVIRQFVSREAEESWVRQVLRRLDT---AHPRIVVFTGFRGCGKSSLCRSAVRKE-G----MPAVFVDVR--GTEDTL 326 (550)
T ss_pred CCCCccCCCCcHHHHHHHHHHHhccCC---CCceEEEEECCCCCCHHHHHHHHHhcC-C----ceEEEECCC--CHHHHH
Confidence 345567899999999999999865433 334699999999999999999988642 2 123333333 679999
Q ss_pred HHHHHHhcCCCCCcC-c-hHHHHHHHHHHh-c-CCeEEEEEeCCCcCChh-hHHHhhcccCCCCCCcEEEEEccchhhhh
Q 000594 229 KAILESITLSPCDLK-D-LNSVQLKLKEAV-F-KKKFLIVLDDVWSERYD-LWQALKSPFMAGAPGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~-~-~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~~~-~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 303 (1402)
+.++.+++.++.... + ...+++.+.+.- . +++.+||+-==...+.. .+.+ ..++.....-|+|++----+.+..
T Consensus 327 r~LL~ALGV~p~~~k~dLLrqIqeaLl~~~~e~GrtPVLII~lreg~~l~rvyne-~v~la~drr~ch~v~evpleslt~ 405 (550)
T PTZ00202 327 RSVVKALGVPNVEACGDLLDFISEACRRAKKMNGETPLLVLKLREGSSLQRVYNE-VVALACDRRLCHVVIEVPLESLTI 405 (550)
T ss_pred HHHHHHcCCCCcccHHHHHHHHHHHHHHHHHhCCCCEEEEEEecCCCcHHHHHHH-HHHHHccchhheeeeeehHhhcch
Confidence 999999997543221 1 234444443322 2 67777776532112111 1222 123334445677877554333221
Q ss_pred hcCCC-cceeecccCCChhhHHHHHHHh
Q 000594 304 TMGSG-KNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 304 ~~~~~-~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
....- ..-.+-+++++.++|.+.-...
T Consensus 406 ~~~~lprldf~~vp~fsr~qaf~y~~h~ 433 (550)
T PTZ00202 406 ANTLLPRLDFYLVPNFSRSQAFAYTQHA 433 (550)
T ss_pred hcccCccceeEecCCCCHHHHHHHHhhc
Confidence 11111 1122348999999998876544
No 71
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.30 E-value=1.3e-05 Score=95.79 Aligned_cols=185 Identities=16% Similarity=0.119 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-c-------------------ccCce
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-E-------------------AFEPK 213 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~-------------------~f~~~ 213 (1402)
.+++|.+..+..+...+.... -...+.++|+.|+||||+|+.+++.... . .|...
T Consensus 16 ~diiGq~~~v~~L~~~i~~~r-----l~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~~i~~~~~~dl 90 (546)
T PRK14957 16 AEVAGQQHALNSLVHALETQK-----VHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCVAINNNSFIDL 90 (546)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHHHhcCCCCce
Confidence 468999999999999886532 2356789999999999999999864321 1 11112
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEE
Q 000594 214 AWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRI 292 (1402)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 292 (1402)
+++.......+ ++..++...+.. -..+++-++|+|++..-....++.+...+-.....+.+
T Consensus 91 ieidaas~~gv------------------d~ir~ii~~~~~~p~~g~~kViIIDEa~~ls~~a~naLLK~LEepp~~v~f 152 (546)
T PRK14957 91 IEIDAASRTGV------------------EETKEILDNIQYMPSQGRYKVYLIDEVHMLSKQSFNALLKTLEEPPEYVKF 152 (546)
T ss_pred EEeecccccCH------------------HHHHHHHHHHHhhhhcCCcEEEEEechhhccHHHHHHHHHHHhcCCCCceE
Confidence 22221111111 112222222221 12356779999999766666777787777655556655
Q ss_pred E-EEccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHh
Q 000594 293 I-VTTRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARALGG 366 (1402)
Q Consensus 293 i-vTtR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 366 (1402)
| +||....+...... ....+++++++.++..+.+.+.+-..+.. --.+....|++.++|.+- |+..+-.
T Consensus 153 IL~Ttd~~kil~tI~S-Rc~~~~f~~Ls~~eI~~~L~~il~~egi~----~e~~Al~~Ia~~s~GdlR~alnlLek 223 (546)
T PRK14957 153 ILATTDYHKIPVTILS-RCIQLHLKHISQADIKDQLKIILAKENIN----SDEQSLEYIAYHAKGSLRDALSLLDQ 223 (546)
T ss_pred EEEECChhhhhhhHHH-heeeEEeCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 5 45544444433221 23456699999999888777655322211 124566788999999664 5544433
No 72
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.30 E-value=1.3e-07 Score=103.40 Aligned_cols=61 Identities=8% Similarity=0.157 Sum_probs=37.5
Q ss_pred ccccCcceeEeecCCCccccc---cccCCCCcceEEEecCCCccCCch--hhhcCCCcchhhhhcccc
Q 000594 974 HSFTCLKDLHIGICPTLVSLR---NICFLSSLSEITIEHCNALTSLTD--GMIHNNAQLKVLRIKGCH 1036 (1402)
Q Consensus 974 ~~l~~L~~L~L~~~~~l~~~~---~~~~l~~L~~L~l~~c~~l~~l~~--~~~~~l~~L~~L~L~~c~ 1036 (1402)
..+.+|++..+.+++. ...+ ....+++++.|+|++ |-+..+.. .....+|+|+.|+|+.|.
T Consensus 118 sn~kkL~~IsLdn~~V-~~~~~~~~~k~~~~v~~LdLS~-NL~~nw~~v~~i~eqLp~Le~LNls~Nr 183 (505)
T KOG3207|consen 118 SNLKKLREISLDNYRV-EDAGIEEYSKILPNVRDLDLSR-NLFHNWFPVLKIAEQLPSLENLNLSSNR 183 (505)
T ss_pred hhHHhhhheeecCccc-cccchhhhhhhCCcceeecchh-hhHHhHHHHHHHHHhcccchhccccccc
Confidence 3556677777766641 1111 234677788888887 55554432 345678888888888753
No 73
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.30 E-value=1.3e-07 Score=97.67 Aligned_cols=101 Identities=26% Similarity=0.296 Sum_probs=75.1
Q ss_pred ccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccc
Q 000594 566 LPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHL 645 (1402)
Q Consensus 566 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L 645 (1402)
....+.|..|||++|.|+.+.+++.-++.+|+|++|+|.|..+-. +..|++|+.||||+| .+..+-..=.+|-|.+.|
T Consensus 280 ~dTWq~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N-~Ls~~~Gwh~KLGNIKtL 357 (490)
T KOG1259|consen 280 ADTWQELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGN-LLAECVGWHLKLGNIKTL 357 (490)
T ss_pred cchHhhhhhccccccchhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccc-hhHhhhhhHhhhcCEeee
Confidence 455678888999999998888888888889999999998888744 888888999999988 455555555577788888
Q ss_pred cccCcccccccccCccccccccccc
Q 000594 646 DIEGAYQLCELPLGMKELKCLRTLT 670 (1402)
Q Consensus 646 ~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1402)
.|++|. +..+ .++++|-+|..|+
T Consensus 358 ~La~N~-iE~L-SGL~KLYSLvnLD 380 (490)
T KOG1259|consen 358 KLAQNK-IETL-SGLRKLYSLVNLD 380 (490)
T ss_pred ehhhhh-Hhhh-hhhHhhhhheecc
Confidence 888875 4433 3455555555554
No 74
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=98.29 E-value=3e-05 Score=88.91 Aligned_cols=196 Identities=15% Similarity=0.090 Sum_probs=113.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-CceeE---EEeCCCCCHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAW---VCVSHDFDVLRISK 229 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~w---v~~~~~~~~~~~~~ 229 (1402)
.+++|.++.++.+.+.+.... -...+.++|+.|+||+|+|..+.+....... ..... .............+
T Consensus 19 ~~iiGq~~~~~~L~~~~~~~r-----l~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~~~~c~~c~ 93 (365)
T PRK07471 19 TALFGHAAAEAALLDAYRSGR-----LHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAIDPDHPVAR 93 (365)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccCCCCChHHH
Confidence 568999999999999887642 2357889999999999999998875432221 10000 00000000001112
Q ss_pred HHHHHhcCC-------C-C------CcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCc
Q 000594 230 AILESITLS-------P-C------DLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGS 290 (1402)
Q Consensus 230 ~i~~~~~~~-------~-~------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 290 (1402)
.+...-... . . ..-.++++ ..+.+.+ .+++.++|+||+..-+......+...+..-..++
T Consensus 94 ~i~~~~HPDl~~i~~~~~~~~~~~~~~I~Vdqi-R~l~~~~~~~~~~~~~kVviIDead~m~~~aanaLLK~LEepp~~~ 172 (365)
T PRK07471 94 RIAAGAHGGLLTLERSWNEKGKRLRTVITVDEV-RELISFFGLTAAEGGWRVVIVDTADEMNANAANALLKVLEEPPARS 172 (365)
T ss_pred HHHccCCCCeEEEecccccccccccccccHHHH-HHHHHHhCcCcccCCCEEEEEechHhcCHHHHHHHHHHHhcCCCCe
Confidence 221111000 0 0 00012332 2233333 2567799999997777777777777776554566
Q ss_pred EEEEEccchh-hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 291 RIIVTTRSMD-VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 291 ~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.+|++|...+ +.... ......+.+.+++.++..+++.+.... . + .+....+++.++|.|.....+
T Consensus 173 ~~IL~t~~~~~llpti-~SRc~~i~l~~l~~~~i~~~L~~~~~~-----~-~--~~~~~~l~~~s~Gsp~~Al~l 238 (365)
T PRK07471 173 LFLLVSHAPARLLPTI-RSRCRKLRLRPLAPEDVIDALAAAGPD-----L-P--DDPRAALAALAEGSVGRALRL 238 (365)
T ss_pred EEEEEECCchhchHHh-hccceEEECCCCCHHHHHHHHHHhccc-----C-C--HHHHHHHHHHcCCCHHHHHHH
Confidence 6777776643 33222 223456779999999999999775411 1 1 122267899999999866554
No 75
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=98.28 E-value=1.7e-05 Score=91.82 Aligned_cols=182 Identities=16% Similarity=0.127 Sum_probs=105.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEe--CCCCCHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV--SHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~--~~~~~~~~~~~~i 231 (1402)
.+++|+++.++.+..++... ..+.+.++|..|+||||+|+.+++......+.. .++.+ +...... ...+.
T Consensus 17 ~~~~g~~~~~~~l~~~i~~~------~~~~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~-~~i~~~~~~~~~~~-~~~~~ 88 (319)
T PRK00440 17 DEIVGQEEIVERLKSYVKEK------NMPHLLFAGPPGTGKTTAALALARELYGEDWRE-NFLELNASDERGID-VIRNK 88 (319)
T ss_pred HHhcCcHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHHcCCcccc-ceEEeccccccchH-HHHHH
Confidence 45889999999999988542 223579999999999999999987643333321 22222 2211111 11111
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhhhcCCCcc
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVASTMGSGKN 310 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~ 310 (1402)
+.++..... .-...+-++|+|++..-..+....+...+......+++|+++... .+...... ..
T Consensus 89 i~~~~~~~~--------------~~~~~~~vviiDe~~~l~~~~~~~L~~~le~~~~~~~lIl~~~~~~~l~~~l~s-r~ 153 (319)
T PRK00440 89 IKEFARTAP--------------VGGAPFKIIFLDEADNLTSDAQQALRRTMEMYSQNTRFILSCNYSSKIIDPIQS-RC 153 (319)
T ss_pred HHHHHhcCC--------------CCCCCceEEEEeCcccCCHHHHHHHHHHHhcCCCCCeEEEEeCCccccchhHHH-Hh
Confidence 111110000 001345689999985543344555655555444556777776432 22111111 12
Q ss_pred eeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 311 YELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 311 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
..+++++++.++....+.+.+-..+..- -.+..+.+++.++|.+--+.
T Consensus 154 ~~~~~~~l~~~ei~~~l~~~~~~~~~~i----~~~al~~l~~~~~gd~r~~~ 201 (319)
T PRK00440 154 AVFRFSPLKKEAVAERLRYIAENEGIEI----TDDALEAIYYVSEGDMRKAI 201 (319)
T ss_pred heeeeCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHH
Confidence 2356999999999888888774332211 25577888999999876543
No 76
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=98.28 E-value=3.7e-05 Score=88.00 Aligned_cols=208 Identities=13% Similarity=0.103 Sum_probs=127.0
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCHHHHHHHHHH
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+.+|+++++++...|...-.+ ..+.-+.|+|.+|+|||+.++.|........-.. .++|.+....+..+++..|+.
T Consensus 18 ~l~~Re~ei~~l~~~l~~~~~~--~~p~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~i~~ 95 (366)
T COG1474 18 ELPHREEEINQLASFLAPALRG--ERPSNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSKILN 95 (366)
T ss_pred cccccHHHHHHHHHHHHHHhcC--CCCccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHHHHH
Confidence 3889999999999888653322 2223488999999999999999998642221222 688999999999999999999
Q ss_pred HhcCCCCCcCchHHHHHHHHHHhc--CCeEEEEEeCCCcCChhhHHHhhcccCCCC-CCcEE--EEEccchhhhhhcCC-
Q 000594 234 SITLSPCDLKDLNSVQLKLKEAVF--KKKFLIVLDDVWSERYDLWQALKSPFMAGA-PGSRI--IVTTRSMDVASTMGS- 307 (1402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-~gs~i--ivTtR~~~v~~~~~~- 307 (1402)
+++..+.......+....+.+.+. ++.+++|||++..-....-+.+..-+.... .+++| |..+-+......+..
T Consensus 96 ~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~~~LY~L~r~~~~~~~~v~vi~i~n~~~~~~~ld~r 175 (366)
T COG1474 96 KLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDGEVLYSLLRAPGENKVKVSIIAVSNDDKFLDYLDPR 175 (366)
T ss_pred HcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccchHHHHHHhhccccceeEEEEEEeccHHHHHHhhhh
Confidence 998555544555566666666664 689999999994311010012222222211 14443 334444333332211
Q ss_pred ----CcceeecccCCChhhHHHHHHHhhcCCC-CCCCCchHHHHHHHHHHHcCC-ChHHHHHH
Q 000594 308 ----GKNYELELKLLSDDDRWSVFVNHAFEGR-DAGTHGNFESARQRVVEKCKG-LPLAARAL 364 (1402)
Q Consensus 308 ----~~~~~~~l~~L~~~~~~~lf~~~a~~~~-~~~~~~~~~~~~~~i~~~~~g-~PLai~~~ 364 (1402)
.....+..+|.+.+|-.+.+..++-..- +....++.-+....++..-+| --.||.++
T Consensus 176 v~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~~~~~~~vl~lia~~~a~~~GDAR~aidil 238 (366)
T COG1474 176 VKSSLGPSEIVFPPYTAEELYDILRERVEEGFSAGVIDDDVLKLIAALVAAESGDARKAIDIL 238 (366)
T ss_pred hhhccCcceeeeCCCCHHHHHHHHHHHHHhhccCCCcCccHHHHHHHHHHHcCccHHHHHHHH
Confidence 1234466899999999999988874321 112223333444444444443 34444444
No 77
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.28 E-value=2.4e-05 Score=92.76 Aligned_cols=187 Identities=18% Similarity=0.122 Sum_probs=106.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc---cC-----------------ce
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA---FE-----------------PK 213 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---f~-----------------~~ 213 (1402)
.++||.+..+..+...+.... -...+.++|++|+||||+|+.+++...... +. ..
T Consensus 14 ~divGq~~i~~~L~~~i~~~~-----l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~i~~g~~~dv 88 (472)
T PRK14962 14 SEVVGQDHVKKLIINALKKNS-----ISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRSIDEGTFMDV 88 (472)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHHHhcCCCCcc
Confidence 468999988888888775432 234678999999999999999987531110 00 11
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEE
Q 000594 214 AWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRI 292 (1402)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 292 (1402)
..+..+....... +.++...... ...+++-++|+|+++.-..+..+.+...+........+
T Consensus 89 ~el~aa~~~gid~------------------iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt~~a~~~LLk~LE~p~~~vv~ 150 (472)
T PRK14962 89 IELDAASNRGIDE------------------IRKIRDAVGYRPMEGKYKVYIIDEVHMLTKEAFNALLKTLEEPPSHVVF 150 (472)
T ss_pred EEEeCcccCCHHH------------------HHHHHHHHhhChhcCCeEEEEEEChHHhHHHHHHHHHHHHHhCCCcEEE
Confidence 1111111111111 1111111111 12356779999999554334555666665543334444
Q ss_pred EEE-ccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC-ChHHHHHHHhhh
Q 000594 293 IVT-TRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKG-LPLAARALGGLL 368 (1402)
Q Consensus 293 ivT-tR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g-~PLai~~~~~~l 368 (1402)
|++ |....+....... ...+++++++.++....+.+.+...+-.- -.+....|++.++| .+.|+..+..+.
T Consensus 151 Ilattn~~kl~~~L~SR-~~vv~f~~l~~~el~~~L~~i~~~egi~i----~~eal~~Ia~~s~GdlR~aln~Le~l~ 223 (472)
T PRK14962 151 VLATTNLEKVPPTIISR-CQVIEFRNISDELIIKRLQEVAEAEGIEI----DREALSFIAKRASGGLRDALTMLEQVW 223 (472)
T ss_pred EEEeCChHhhhHHHhcC-cEEEEECCccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 444 4334444433322 34566999999999888887774322211 14567788888765 567776665543
No 78
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=98.28 E-value=1.3e-05 Score=96.56 Aligned_cols=192 Identities=15% Similarity=0.118 Sum_probs=108.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc-ccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++||.+..+..|..++... .-.+.+.++|+.|+||||+|+.+.+..... ... +. ........+.+.
T Consensus 16 ddIIGQe~vv~~L~~ai~~~-----rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~---~~----pCg~C~sCr~i~ 83 (709)
T PRK08691 16 ADLVGQEHVVKALQNALDEG-----RLHHAYLLTGTRGVGKTTIARILAKSLNCENAQH---GE----PCGVCQSCTQID 83 (709)
T ss_pred HHHcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCC---CC----CCcccHHHHHHh
Confidence 46899999999999998753 223578899999999999999987753111 110 00 000001111110
Q ss_pred HH-----hcCCCCCcCchHHHHHHHHH----HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhh
Q 000594 233 ES-----ITLSPCDLKDLNSVQLKLKE----AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVA 302 (1402)
Q Consensus 233 ~~-----~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~ 302 (1402)
.. +..........+.+...+.. -..+++-++|+|++..-.......+...+-.....+++|++|.+. .+.
T Consensus 84 ~g~~~DvlEidaAs~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~Ls~~A~NALLKtLEEPp~~v~fILaTtd~~kL~ 163 (709)
T PRK08691 84 AGRYVDLLEIDAASNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPHKVP 163 (709)
T ss_pred ccCccceEEEeccccCCHHHHHHHHHHHHhhhhhCCcEEEEEECccccCHHHHHHHHHHHHhCCCCcEEEEEeCCccccc
Confidence 00 00000011112222222211 123566789999996655455666666665444556677666543 222
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
.... .....+.+++++.++..+.+.+.+-..+... -.+....|++.++|.+.-+.
T Consensus 164 ~TIr-SRC~~f~f~~Ls~eeI~~~L~~Il~kEgi~i----d~eAL~~Ia~~A~GslRdAl 218 (709)
T PRK08691 164 VTVL-SRCLQFVLRNMTAQQVADHLAHVLDSEKIAY----EPPALQLLGRAAAGSMRDAL 218 (709)
T ss_pred hHHH-HHHhhhhcCCCCHHHHHHHHHHHHHHcCCCc----CHHHHHHHHHHhCCCHHHHH
Confidence 2211 1234466889999999998887764332211 24567889999999885443
No 79
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=98.28 E-value=5.9e-06 Score=83.43 Aligned_cols=125 Identities=19% Similarity=0.148 Sum_probs=71.8
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhc
Q 000594 157 YGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESIT 236 (1402)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 236 (1402)
+|++..+..+...+... ..+.+.|+|.+|+||||+|+++++.... .-..++++..............+...
T Consensus 1 ~~~~~~~~~i~~~~~~~------~~~~v~i~G~~G~GKT~l~~~i~~~~~~-~~~~v~~~~~~~~~~~~~~~~~~~~~-- 71 (151)
T cd00009 1 VGQEEAIEALREALELP------PPKNLLLYGPPGTGKTTLARAIANELFR-PGAPFLYLNASDLLEGLVVAELFGHF-- 71 (151)
T ss_pred CchHHHHHHHHHHHhCC------CCCeEEEECCCCCCHHHHHHHHHHHhhc-CCCCeEEEehhhhhhhhHHHHHhhhh--
Confidence 47888999998888542 2357889999999999999999976322 12345566554433322211111000
Q ss_pred CCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCCh---hhHHHhhcccCCC---CCCcEEEEEccchh
Q 000594 237 LSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERY---DLWQALKSPFMAG---APGSRIIVTTRSMD 300 (1402)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~---~~~~~~~~~l~~~---~~gs~iivTtR~~~ 300 (1402)
............++.++|+||++.... ..+......+... ..+..||+||....
T Consensus 72 ----------~~~~~~~~~~~~~~~~lilDe~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 ----------LVRLLFELAEKAKPGVLFIDEIDSLSRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred ----------hHhHHHHhhccCCCeEEEEeChhhhhHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 001111223346788999999974311 2222222322221 36778888888643
No 80
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=98.26 E-value=2e-05 Score=94.12 Aligned_cols=197 Identities=14% Similarity=0.116 Sum_probs=109.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|++..++.+.+++.... -.+.+.++|+.|+||||+|+.+++...... |.... ........+.+..
T Consensus 16 ~dIIGQe~iv~~L~~aI~~~r-----l~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~-----~~~~~-~Cg~C~sCr~i~~ 84 (605)
T PRK05896 16 KQIIGQELIKKILVNAILNNK-----LTHAYIFSGPRGIGKTSIAKIFAKAINCLN-----PKDGD-CCNSCSVCESINT 84 (605)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHHhcCCC-----CCCCC-CCcccHHHHHHHc
Confidence 468999999999999886532 235788999999999999999887532211 21111 1111122222211
Q ss_pred HhcC-----CC---CCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchhhhh
Q 000594 234 SITL-----SP---CDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVAS 303 (1402)
Q Consensus 234 ~~~~-----~~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~ 303 (1402)
.... .. ....++.++...+... ..+++-++|+|++..-....+..+...+-.......+|++| ....+..
T Consensus 85 ~~h~DiieIdaas~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt~~A~NaLLKtLEEPp~~tvfIL~Tt~~~KLl~ 164 (605)
T PRK05896 85 NQSVDIVELDAASNNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLSTSAWNALLKTLEEPPKHVVFIFATTEFQKIPL 164 (605)
T ss_pred CCCCceEEeccccccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCCHHHHHHHHHHHHhCCCcEEEEEECCChHhhhH
Confidence 1100 00 0011122222222111 12334469999996655567777777665444455555544 4334433
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHh
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARALGG 366 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~ 366 (1402)
..... ...+++.+++.++....+.+.+-..+... -.+.+..+++.++|.+- |+..+-.
T Consensus 165 TI~SR-cq~ieF~~Ls~~eL~~~L~~il~kegi~I----s~eal~~La~lS~GdlR~AlnlLek 223 (605)
T PRK05896 165 TIISR-CQRYNFKKLNNSELQELLKSIAKKEKIKI----EDNAIDKIADLADGSLRDGLSILDQ 223 (605)
T ss_pred HHHhh-hhhcccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHHHHH
Confidence 22211 23466999999999888887663322111 14567789999999664 4444433
No 81
>PLN03150 hypothetical protein; Provisional
Probab=98.26 E-value=7.1e-07 Score=111.16 Aligned_cols=93 Identities=28% Similarity=0.388 Sum_probs=84.7
Q ss_pred cccEEEecccccc-cccccccccccccceeccCcccc-ccchhhhcCCCCcEEecCCccccccCchhhhccccccccccc
Q 000594 571 KLRVLSLGRYLIT-EVPVSIGCLKHLRYLNFSNSWIQ-CLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIE 648 (1402)
Q Consensus 571 ~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~ 648 (1402)
.++.|+|++|.+. .+|..|+++++|++|+|++|.+. .+|..++.+++|++|||++|.+.+.+|..+++|++|++|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 4889999999987 67999999999999999999997 789999999999999999998888999999999999999999
Q ss_pred CcccccccccCcccc
Q 000594 649 GAYQLCELPLGMKEL 663 (1402)
Q Consensus 649 ~~~~l~~lp~~i~~L 663 (1402)
+|.....+|..++.+
T Consensus 499 ~N~l~g~iP~~l~~~ 513 (623)
T PLN03150 499 GNSLSGRVPAALGGR 513 (623)
T ss_pred CCcccccCChHHhhc
Confidence 998777889877653
No 82
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.26 E-value=2.1e-05 Score=95.32 Aligned_cols=196 Identities=13% Similarity=0.130 Sum_probs=111.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc-cc--CceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AF--EPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f--~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.++||-+..+..|.+++.... -...+.++|..|+||||+|+.+.+..... .. ....+ ..+......+.
T Consensus 16 ~dviGQe~vv~~L~~~l~~~r-----l~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~----~pCg~C~~C~~ 86 (618)
T PRK14951 16 SEMVGQEHVVQALTNALTQQR-----LHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITA----TPCGVCQACRD 86 (618)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCC----CCCCccHHHHH
Confidence 468999998888999886542 23577899999999999999987643211 00 00000 01111122222
Q ss_pred HHHHhc-----CCCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchh
Q 000594 231 ILESIT-----LSPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMD 300 (1402)
Q Consensus 231 i~~~~~-----~~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 300 (1402)
|...-. .........++..+.+... ..++.-++|+|+|+.-....++.+...+..-....++|++| ....
T Consensus 87 i~~g~h~D~~eldaas~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls~~a~NaLLKtLEEPP~~~~fIL~Ttd~~k 166 (618)
T PRK14951 87 IDSGRFVDYTELDAASNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLTNTAFNAMLKTLEEPPEYLKFVLATTDPQK 166 (618)
T ss_pred HHcCCCCceeecCcccccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCCHHHHHHHHHhcccCCCCeEEEEEECCchh
Confidence 211000 0000011122222222110 12455589999998776677888877776554566666555 4344
Q ss_pred hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 301 v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
+...... ....+++++++.++..+.+.+.+-..+... -.+....|++.++|.+--+..
T Consensus 167 il~TIlS-Rc~~~~f~~Ls~eei~~~L~~i~~~egi~i----e~~AL~~La~~s~GslR~al~ 224 (618)
T PRK14951 167 VPVTVLS-RCLQFNLRPMAPETVLEHLTQVLAAENVPA----EPQALRLLARAARGSMRDALS 224 (618)
T ss_pred hhHHHHH-hceeeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 4332221 234566999999999988887764332211 145677889999987754433
No 83
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.25 E-value=2.5e-08 Score=102.98 Aligned_cols=132 Identities=15% Similarity=0.127 Sum_probs=81.1
Q ss_pred ccccccccccccCcc-cccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCcCcc--ccccCCCCCCCe
Q 000594 1113 VTLKRLDIKNCDNFK-VLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSL--PKGLSNLSHLHR 1189 (1402)
Q Consensus 1113 ~~L~~L~l~~c~~l~-~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l~~l--~~~l~~l~~L~~ 1189 (1402)
+.|+.||+++..... .+...+..|..|+.|.|.++.....+...+..-.+|+.|+++.|+.+++. .-.+.+|+.|..
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 358888887653322 33444566777888888887777777667777788888888888877754 223567888888
Q ss_pred EeeecCCCCcccCCC---CCCCcccceeeccccccCCCCCC----CCCCCccEEEeccCCCc
Q 000594 1190 ISISGCHNLASLPED---ALPSNLVGVLIENCDKLKAPLPT----GKLSSLQQLFLKKCPGI 1244 (1402)
Q Consensus 1190 L~l~~c~~l~~l~~~---~~~~~L~~L~l~~c~~l~~~~~~----~~l~~L~~L~l~~c~~l 1244 (1402)
|+++.|...+..... ....+|+.|++++|..--..... ..+|+|.+|||++|..+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l 326 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVML 326 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccccc
Confidence 888888655443211 12346677777666432110000 45555666666555443
No 84
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=98.25 E-value=1.9e-05 Score=95.96 Aligned_cols=195 Identities=14% Similarity=0.111 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.++||.+..+..+...+.... -...+.++|..|+||||+|+.+++....... + ....+..-...+.|..
T Consensus 16 ~divGQe~vv~~L~~~l~~~r-----l~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~-----~-~~~pCg~C~~C~~i~~ 84 (647)
T PRK07994 16 AEVVGQEHVLTALANALDLGR-----LHHAYLFSGTRGVGKTTIARLLAKGLNCETG-----I-TATPCGECDNCREIEQ 84 (647)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhhhccC-----C-CCCCCCCCHHHHHHHc
Confidence 468999999999998886532 2345789999999999999999875422110 0 0001111122222211
Q ss_pred H-------hcCC-CCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhh
Q 000594 234 S-------ITLS-PCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAS 303 (1402)
Q Consensus 234 ~-------~~~~-~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 303 (1402)
. +... ....+++.++...+.. -..+++-++|+|++..-.....+.+...+-.-....++|++|.+ ..+..
T Consensus 85 g~~~D~ieidaas~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~Ls~~a~NALLKtLEEPp~~v~FIL~Tt~~~kLl~ 164 (647)
T PRK07994 85 GRFVDLIEIDAASRTKVEDTRELLDNVQYAPARGRFKVYLIDEVHMLSRHSFNALLKTLEEPPEHVKFLLATTDPQKLPV 164 (647)
T ss_pred CCCCCceeecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhCCHHHHHHHHHHHHcCCCCeEEEEecCCccccch
Confidence 0 0000 0011122222222221 12467779999999776667777777776554456665555544 44433
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.+.. ....+.+++++.++..+.+.+.+-..+.. .-.+....|++.++|.+--+..+
T Consensus 165 TI~S-RC~~~~f~~Ls~~ei~~~L~~il~~e~i~----~e~~aL~~Ia~~s~Gs~R~Al~l 220 (647)
T PRK07994 165 TILS-RCLQFHLKALDVEQIRQQLEHILQAEQIP----FEPRALQLLARAADGSMRDALSL 220 (647)
T ss_pred HHHh-hheEeeCCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHH
Confidence 2222 24556799999999998887765322211 12456678999999988644433
No 85
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.24 E-value=2.8e-05 Score=91.60 Aligned_cols=181 Identities=20% Similarity=0.157 Sum_probs=110.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc--------------------cccCce
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT--------------------EAFEPK 213 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--------------------~~f~~~ 213 (1402)
.++||.+..++.+.+.+..+. -.+.+.++|+.|+||||+|+.+++.... ..+..+
T Consensus 13 ~dliGQe~vv~~L~~a~~~~r-----i~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~~i~~~~~~Dv 87 (491)
T PRK14964 13 KDLVGQDVLVRILRNAFTLNK-----IPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCISIKNSNHPDV 87 (491)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHHHHhccCCCCE
Confidence 568999998888888876532 2347889999999999999998763211 011122
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE
Q 000594 214 AWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII 293 (1402)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 293 (1402)
+.+..+....+.+ .+++++..... -..+++-++|+|++..-.....+.+...+-.-.+.+++|
T Consensus 88 ~eidaas~~~vdd-IR~Iie~~~~~----------------P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fI 150 (491)
T PRK14964 88 IEIDAASNTSVDD-IKVILENSCYL----------------PISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFI 150 (491)
T ss_pred EEEecccCCCHHH-HHHHHHHHHhc----------------cccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEE
Confidence 2333222222221 11222111100 112566689999996655566777777776555667766
Q ss_pred EEcc-chhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 294 VTTR-SMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 294 vTtR-~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
++|. ...+...+.. ....+++++++.++..+.+.+.+...+... -.+..+.|++.++|.+-.+
T Consensus 151 latte~~Kl~~tI~S-Rc~~~~f~~l~~~el~~~L~~ia~~Egi~i----~~eAL~lIa~~s~GslR~a 214 (491)
T PRK14964 151 LATTEVKKIPVTIIS-RCQRFDLQKIPTDKLVEHLVDIAKKENIEH----DEESLKLIAENSSGSMRNA 214 (491)
T ss_pred EEeCChHHHHHHHHH-hheeeecccccHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 6554 3444433322 234466999999999999888774433221 1456778999999887543
No 86
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=98.23 E-value=3.2e-05 Score=89.49 Aligned_cols=194 Identities=14% Similarity=0.102 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcCCCC----CCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPS----DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~----~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
.+++|.+..++.+.+++...... ...-.+.+.++|+.|+||||+|+.+++......-+ + .....-...+
T Consensus 5 ~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~---~----~~Cg~C~~C~ 77 (394)
T PRK07940 5 DDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPD---E----PGCGECRACR 77 (394)
T ss_pred hhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCC---C----CCCCCCHHHH
Confidence 35889999999999998764310 00134678899999999999999987643221100 0 0000001111
Q ss_pred HHHHHhcC---------CCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-
Q 000594 230 AILESITL---------SPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS- 298 (1402)
Q Consensus 230 ~i~~~~~~---------~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~- 298 (1402)
.+...-.. .....+++.++.+.+.. -..+++-++|+|++..-+......+...+-....+..+|++|.+
T Consensus 78 ~~~~~~hpD~~~i~~~~~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~~~aanaLLk~LEep~~~~~fIL~a~~~ 157 (394)
T PRK07940 78 TVLAGTHPDVRVVAPEGLSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLTERAANALLKAVEEPPPRTVWLLCAPSP 157 (394)
T ss_pred HHhcCCCCCEEEeccccccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcCHHHHHHHHHHhhcCCCCCeEEEEECCh
Confidence 11100000 00001111222222211 11245558888999665555666676666544456666666555
Q ss_pred hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 299 MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 299 ~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
..+...+.. ....+.+++++.++..+.+.+.. + .. .+.+..+++.++|.|.....+
T Consensus 158 ~~llpTIrS-Rc~~i~f~~~~~~~i~~~L~~~~---~--~~----~~~a~~la~~s~G~~~~A~~l 213 (394)
T PRK07940 158 EDVLPTIRS-RCRHVALRTPSVEAVAEVLVRRD---G--VD----PETARRAARASQGHIGRARRL 213 (394)
T ss_pred HHChHHHHh-hCeEEECCCCCHHHHHHHHHHhc---C--CC----HHHHHHHHHHcCCCHHHHHHH
Confidence 344433322 23456699999999998886432 1 11 345678899999999765444
No 87
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.23 E-value=6.9e-07 Score=73.54 Aligned_cols=59 Identities=34% Similarity=0.397 Sum_probs=52.0
Q ss_pred ccccceeccCccccccch-hhhcCCCCcEEecCCccccccCchhhhcccccccccccCcc
Q 000594 593 KHLRYLNFSNSWIQCLPE-VITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEGAY 651 (1402)
Q Consensus 593 ~~Lr~L~Ls~~~i~~lp~-~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~~~~ 651 (1402)
++|++|++++|.++.+|. .|.++++|++|++++|.+...-|..|..+++|++|++++|.
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 479999999999999984 68999999999999996655555679999999999999986
No 88
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=98.22 E-value=1.9e-06 Score=92.82 Aligned_cols=87 Identities=23% Similarity=0.171 Sum_probs=61.8
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC--CCHHHHHHHHHHHhcCCCCCcCchH------HHHHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD--FDVLRISKAILESITLSPCDLKDLN------SVQLKLK 253 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~------~~~~~l~ 253 (1402)
..++|+|++|+|||||++++|++....+|+.++|+.+.+. .++.++++.+...+-....+..... .......
T Consensus 17 qr~~I~G~~G~GKTTLlr~I~n~l~~~~fdv~~~v~vI~er~~ev~el~~~I~~~~v~~~~~~~~~~~~~~~~~~~~~a~ 96 (249)
T cd01128 17 QRGLIVAPPKAGKTTLLQSIANAITKNHPEVYLIVLLIDERPEEVTDMQRSVKGEVIASTFDEPPERHVQVAEMVLEKAK 96 (249)
T ss_pred CEEEEECCCCCCHHHHHHHHHhccccccCCeEEEEEEccCCCccHHHHHHHhccEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence 5789999999999999999999764558999999998776 7899999999443333222211111 1112222
Q ss_pred HH-hcCCeEEEEEeCC
Q 000594 254 EA-VFKKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~-l~~k~~LlVlDdv 268 (1402)
.. -.++++++++|++
T Consensus 97 ~~~~~G~~vll~iDei 112 (249)
T cd01128 97 RLVEHGKDVVILLDSI 112 (249)
T ss_pred HHHHCCCCEEEEEECH
Confidence 21 2489999999999
No 89
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=98.22 E-value=3.2e-05 Score=81.15 Aligned_cols=92 Identities=18% Similarity=0.198 Sum_probs=63.2
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCC
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRD 336 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 336 (1402)
+.+-++|+||+..-..+.++.+...+......+.+|++|++. .+...... ....+++.+++.++..+.+.+. +
T Consensus 95 ~~~kviiide~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~s-r~~~~~~~~~~~~~~~~~l~~~--g--- 168 (188)
T TIGR00678 95 SGRRVVIIEDAERMNEAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRS-RCQVLPFPPLSEEALLQWLIRQ--G--- 168 (188)
T ss_pred CCeEEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHh-hcEEeeCCCCCHHHHHHHHHHc--C---
Confidence 566789999996655566777777776655567777777653 33222222 2345679999999998888776 1
Q ss_pred CCCCchHHHHHHHHHHHcCCChHH
Q 000594 337 AGTHGNFESARQRVVEKCKGLPLA 360 (1402)
Q Consensus 337 ~~~~~~~~~~~~~i~~~~~g~PLa 360 (1402)
.. .+.+..|++.++|.|..
T Consensus 169 -i~----~~~~~~i~~~~~g~~r~ 187 (188)
T TIGR00678 169 -IS----EEAAELLLALAGGSPGA 187 (188)
T ss_pred -CC----HHHHHHHHHHcCCCccc
Confidence 11 45688999999998853
No 90
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=98.22 E-value=3.9e-05 Score=87.48 Aligned_cols=197 Identities=17% Similarity=0.181 Sum_probs=115.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc---cCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA---FEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---f~~~~wv~~~~~~~~~~~~~ 229 (1402)
-..++|.++..+.+...+.... -...+.|+|+.|+||||+|+.+.+...... +.... ...........+
T Consensus 22 ~~~l~Gh~~a~~~L~~a~~~gr-----l~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~---~~~~~~~c~~c~ 93 (351)
T PRK09112 22 NTRLFGHEEAEAFLAQAYREGK-----LHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPET---LADPDPASPVWR 93 (351)
T ss_pred hhhccCcHHHHHHHHHHHHcCC-----CCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccc---cCCCCCCCHHHH
Confidence 4568999999999999986542 235788999999999999999887643211 11110 011111112333
Q ss_pred HHHHH-------hcCCCC-------CcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCc
Q 000594 230 AILES-------ITLSPC-------DLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGS 290 (1402)
Q Consensus 230 ~i~~~-------~~~~~~-------~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs 290 (1402)
.+... +..+.. ..-.++++. .+.+++ .+++-++|+|++..-+....+.+...+.....+.
T Consensus 94 ~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR-~l~~~l~~~~~~g~~rVviIDeAd~l~~~aanaLLk~LEEpp~~~ 172 (351)
T PRK09112 94 QIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIR-RVGHFLSQTSGDGNWRIVIIDPADDMNRNAANAILKTLEEPPARA 172 (351)
T ss_pred HHHcCCCCCEEEeecccccccccccccCCHHHHH-HHHHHhhhccccCCceEEEEEchhhcCHHHHHHHHHHHhcCCCCc
Confidence 33222 110000 001123322 333333 3567799999997766666777776665433444
Q ss_pred E-EEEEccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000594 291 R-IIVTTRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALG 365 (1402)
Q Consensus 291 ~-iivTtR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 365 (1402)
. |++|++...+...... ....+.+.+++.++..+++.+.+.... --.+....|++.++|.|.....+.
T Consensus 173 ~fiLit~~~~~llptIrS-Rc~~i~l~pl~~~~~~~~L~~~~~~~~------~~~~~~~~i~~~s~G~pr~Al~ll 241 (351)
T PRK09112 173 LFILISHSSGRLLPTIRS-RCQPISLKPLDDDELKKALSHLGSSQG------SDGEITEALLQRSKGSVRKALLLL 241 (351)
T ss_pred eEEEEECChhhccHHHHh-hccEEEecCCCHHHHHHHHHHhhcccC------CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 4 4555554444433322 235677999999999999987432111 113456789999999998665443
No 91
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.21 E-value=2.6e-05 Score=93.57 Aligned_cols=182 Identities=14% Similarity=0.074 Sum_probs=107.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-ccc-------------------Cce
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAF-------------------EPK 213 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f-------------------~~~ 213 (1402)
.++||-+..++.+.+++.... -...+.++|+.|+||||+|+.+++.... ..+ ..+
T Consensus 16 ~divGq~~v~~~L~~~~~~~~-----l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~i~~g~~~d~ 90 (509)
T PRK14958 16 QEVIGQAPVVRALSNALDQQY-----LHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCREIDEGRFPDL 90 (509)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHHHHhcCCCceE
Confidence 468999999999999996542 2346789999999999999998875421 111 111
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE
Q 000594 214 AWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII 293 (1402)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 293 (1402)
+.+..+....+.++ +++++.+.. .-..++.-++|+|++..-.....+.+...+..-...+++|
T Consensus 91 ~eidaas~~~v~~i-R~l~~~~~~----------------~p~~~~~kV~iIDE~~~ls~~a~naLLk~LEepp~~~~fI 153 (509)
T PRK14958 91 FEVDAASRTKVEDT-RELLDNIPY----------------APTKGRFKVYLIDEVHMLSGHSFNALLKTLEEPPSHVKFI 153 (509)
T ss_pred EEEcccccCCHHHH-HHHHHHHhh----------------ccccCCcEEEEEEChHhcCHHHHHHHHHHHhccCCCeEEE
Confidence 22221111111111 112221111 0113566689999997766667777777766555567766
Q ss_pred EEccc-hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 294 VTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 294 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
++|.+ ..+...... ....+++++++.++..+.+.+.+-..+... -.+....|++.++|.+--+.
T Consensus 154 lattd~~kl~~tI~S-Rc~~~~f~~l~~~~i~~~l~~il~~egi~~----~~~al~~ia~~s~GslR~al 218 (509)
T PRK14958 154 LATTDHHKLPVTVLS-RCLQFHLAQLPPLQIAAHCQHLLKEENVEF----ENAALDLLARAANGSVRDAL 218 (509)
T ss_pred EEECChHhchHHHHH-HhhhhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHH
Confidence 65543 333322211 123456999999988777666653322111 14456778899999875443
No 92
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=98.20 E-value=5.4e-05 Score=88.96 Aligned_cols=184 Identities=15% Similarity=0.077 Sum_probs=109.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc---ccC-----------------ce
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE---AFE-----------------PK 213 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~---~f~-----------------~~ 213 (1402)
.+++|.+..++.+.+++... .-...+.++|++|+||||+|+.+....... .++ ..
T Consensus 14 ~~iig~~~~~~~l~~~~~~~-----~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~~~ 88 (355)
T TIGR02397 14 EDVIGQEHIVQTLKNAIKNG-----RIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKEINSGSSLDV 88 (355)
T ss_pred hhccCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHHHhcCCCCCE
Confidence 46799999999999988653 223578899999999999999988653211 111 01
Q ss_pred eEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEE
Q 000594 214 AWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRI 292 (1402)
Q Consensus 214 ~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 292 (1402)
+++........ .+..++...+.. -..+++-++|+|++..-.....+.+...+......+.+
T Consensus 89 ~~~~~~~~~~~------------------~~~~~l~~~~~~~p~~~~~~vviidea~~l~~~~~~~Ll~~le~~~~~~~l 150 (355)
T TIGR02397 89 IEIDAASNNGV------------------DDIREILDNVKYAPSSGKYKVYIIDEVHMLSKSAFNALLKTLEEPPEHVVF 150 (355)
T ss_pred EEeeccccCCH------------------HHHHHHHHHHhcCcccCCceEEEEeChhhcCHHHHHHHHHHHhCCccceeE
Confidence 11111111111 111222222211 12245568899998544445566777766544456666
Q ss_pred EEEccchh-hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000594 293 IVTTRSMD-VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALG 365 (1402)
Q Consensus 293 ivTtR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 365 (1402)
|++|.+.. +...+... ...+++++++.++..+.+...+-..+... -.+.+..+++.++|.|..+....
T Consensus 151 Il~~~~~~~l~~~l~sr-~~~~~~~~~~~~~l~~~l~~~~~~~g~~i----~~~a~~~l~~~~~g~~~~a~~~l 219 (355)
T TIGR02397 151 ILATTEPHKIPATILSR-CQRFDFKRIPLEDIVERLKKILDKEGIKI----EDEALELIARAADGSLRDALSLL 219 (355)
T ss_pred EEEeCCHHHHHHHHHhh-eeEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCChHHHHHHH
Confidence 66665443 33222211 23456889999999888887764322111 14677889999999986655443
No 93
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.19 E-value=4.9e-07 Score=93.43 Aligned_cols=110 Identities=25% Similarity=0.263 Sum_probs=93.0
Q ss_pred hhhhhhhccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhc
Q 000594 559 PMVLSDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGN 638 (1402)
Q Consensus 559 ~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~ 638 (1402)
...+..+..-.+.+|+|+++.|.|..+-. +..|.+|..||||+|.++++-..-.+|-|.++|.|++| .+..+. ++++
T Consensus 296 I~~iDESvKL~Pkir~L~lS~N~i~~v~n-La~L~~L~~LDLS~N~Ls~~~Gwh~KLGNIKtL~La~N-~iE~LS-GL~K 372 (490)
T KOG1259|consen 296 ITQIDESVKLAPKLRRLILSQNRIRTVQN-LAELPQLQLLDLSGNLLAECVGWHLKLGNIKTLKLAQN-KIETLS-GLRK 372 (490)
T ss_pred hhhhhhhhhhccceeEEeccccceeeehh-hhhcccceEeecccchhHhhhhhHhhhcCEeeeehhhh-hHhhhh-hhHh
Confidence 34556667778899999999999998854 88999999999999999999777789999999999998 556654 5899
Q ss_pred ccccccccccCcccccccc--cCcccccccccccce
Q 000594 639 LVNLHHLDIEGAYQLCELP--LGMKELKCLRTLTNF 672 (1402)
Q Consensus 639 L~~L~~L~l~~~~~l~~lp--~~i~~L~~L~~L~~~ 672 (1402)
|.+|..||+++|+ +..+. .+||+|+.|++|...
T Consensus 373 LYSLvnLDl~~N~-Ie~ldeV~~IG~LPCLE~l~L~ 407 (490)
T KOG1259|consen 373 LYSLVNLDLSSNQ-IEELDEVNHIGNLPCLETLRLT 407 (490)
T ss_pred hhhheeccccccc-hhhHHHhcccccccHHHHHhhc
Confidence 9999999999998 76665 569999999998643
No 94
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.16 E-value=3.2e-05 Score=90.99 Aligned_cols=197 Identities=14% Similarity=0.138 Sum_probs=110.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEE-eCCCCCHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVC-VSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~-~~~~~~~~~~~~~i 231 (1402)
.+++|.+..++.+.+++.... -...+.++|+.|+||||+|+.+++.... ...+...|.. +......-...+.+
T Consensus 16 ~eiiGq~~~~~~L~~~~~~~~-----~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c~~c~~c~~~ 90 (397)
T PRK14955 16 ADITAQEHITRTIQNSLRMGR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPCGECESCRDF 90 (397)
T ss_pred hhccChHHHHHHHHHHHHhCC-----cceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCCCCCHHHHHH
Confidence 468999999999988886532 2345789999999999999998875422 1111111111 01111111122222
Q ss_pred HHHhcCC-----CCCcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchh
Q 000594 232 LESITLS-----PCDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMD 300 (1402)
Q Consensus 232 ~~~~~~~-----~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 300 (1402)
....... .......+++.+ +.+.+ .+++-++|+|++..-....++.+...+....+.+.+|++| +...
T Consensus 91 ~~~~~~n~~~~~~~~~~~id~Ir~-l~~~~~~~p~~~~~kvvIIdea~~l~~~~~~~LLk~LEep~~~t~~Il~t~~~~k 169 (397)
T PRK14955 91 DAGTSLNISEFDAASNNSVDDIRL-LRENVRYGPQKGRYRVYIIDEVHMLSIAAFNAFLKTLEEPPPHAIFIFATTELHK 169 (397)
T ss_pred hcCCCCCeEeecccccCCHHHHHH-HHHHHhhchhcCCeEEEEEeChhhCCHHHHHHHHHHHhcCCCCeEEEEEeCChHH
Confidence 2111100 001111233222 22222 3556688999996655567888877776555566666555 4344
Q ss_pred hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 301 v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
+...... ....+++++++.++..+.+...+-..+... -.+.++.|++.++|.+--+
T Consensus 170 l~~tl~s-R~~~v~f~~l~~~ei~~~l~~~~~~~g~~i----~~~al~~l~~~s~g~lr~a 225 (397)
T PRK14955 170 IPATIAS-RCQRFNFKRIPLEEIQQQLQGICEAEGISV----DADALQLIGRKAQGSMRDA 225 (397)
T ss_pred hHHHHHH-HHHHhhcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4332221 123456999999998888877663222111 2567788999999987543
No 95
>COG3903 Predicted ATPase [General function prediction only]
Probab=98.16 E-value=3.4e-06 Score=93.22 Aligned_cols=270 Identities=19% Similarity=0.217 Sum_probs=168.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCcee-EEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA-WVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~-wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
...|.+.++|.|||||||++-.+.. +...|+... ++....-.+...+.-.+...++...... +.....+.....
T Consensus 12 ~~~RlvtL~g~ggvgkttl~~~~a~--~~~~~~~~v~~vdl~pitD~~~v~~~~ag~~gl~~~~g---~~~~~~~~~~~~ 86 (414)
T COG3903 12 TALRLVTLTGAGGVGKTTLALQAAH--AASEYADGVAFVDLAPITDPALVFPTLAGALGLHVQPG---DSAVDTLVRRIG 86 (414)
T ss_pred hhhheeeeeccCccceehhhhhhHh--HhhhcccceeeeeccccCchhHhHHHHHhhcccccccc---hHHHHHHHHHHh
Confidence 3457899999999999999999886 556676555 4555555556666666666566543221 223345566677
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCCcceeecccCCChh-hHHHHHHHhhcCCCC
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSGKNYELELKLLSDD-DRWSVFVNHAFEGRD 336 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~~~l~~L~~~-~~~~lf~~~a~~~~~ 336 (1402)
++|.++|+||...- .+.-..+...+..+...-.|+.|+|..-... ......+.+|+.. ++.++|...+.....
T Consensus 87 ~rr~llvldncehl-~~~~a~~i~all~~~~~~~~~atsre~~l~~-----ge~~~~~~~L~~~d~a~~lf~~ra~~~~~ 160 (414)
T COG3903 87 DRRALLVLDNCEHL-LDACAALIVALLGACPRLAILATSREAILVA-----GEVHRRVPSLSLFDEAIELFVCRAVLVAL 160 (414)
T ss_pred hhhHHHHhcCcHHH-HHHHHHHHHHHHccchhhhhHHHhHhhhccc-----ccccccCCccccCCchhHHHHHHHHHhcc
Confidence 89999999998321 1233345555666667778999999743322 2222347777665 788998877643221
Q ss_pred C-CCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCCh-------hHHHHHhhhhcccCCCCCChhHHHHHHhccCcHH
Q 000594 337 A-GTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERV-------DEWRTILDSKIWNLQDKTEIPSVLKLSYHHLPSH 408 (1402)
Q Consensus 337 ~-~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~-------~~w~~~~~~~~~~~~~~~~i~~~l~~sy~~L~~~ 408 (1402)
. .-...-.....+|.++.+|.|++|...++..+.-... +.|...-.-...-........+.+.+||.-|..-
T Consensus 161 ~f~l~~~~~a~v~~icr~ldg~~laielaaarv~sl~~~~i~~~L~drf~ll~~~~r~a~~~~qtl~asl~ws~~lLtgw 240 (414)
T COG3903 161 SFWLTDDNAAAVAEICRRLDGIPLAIELAAARVRSLSPDEIAAGLRDRFRLLTGGARLAVLRQQTLRASLDWSYALLTGW 240 (414)
T ss_pred ceeecCCchHHHHHHHHHhhcchHHHHHHHHHHHhcCHHHHHHHHhhHHHHHhcccccchhHHHhccchhhhhhHhhhhH
Confidence 1 1112235678899999999999999999988765321 2222221110000011345678899999999999
Q ss_pred HHHHHhHhccCCCCccccHHHHHHHHHHhcCccccCCchhHHHHHHHHHHHHHhCccccc
Q 000594 409 LKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELEDWGSKYFHDLLSRSMFQK 468 (1402)
Q Consensus 409 ~k~cfl~~~~fp~~~~i~~~~li~~w~a~g~i~~~~~~~~~~~~~~~~~~~L~~r~l~~~ 468 (1402)
.+--|..++.|...|.-. ...|.+-|-..... .-....-+..+++.+++..
T Consensus 241 e~~~~~rLa~~~g~f~~~----l~~~~a~g~~~~~~-----~y~~~~a~~ll~~kslv~a 291 (414)
T COG3903 241 ERALFGRLAVFVGGFDLG----LALAVAAGADVDVP-----RYLVLLALTLLVDKSLVVA 291 (414)
T ss_pred HHHHhcchhhhhhhhccc----HHHHHhcCCccccc-----hHHHHHHHHHHhhccchhh
Confidence 999999999998887654 23444444221000 1112233556677776643
No 96
>PRK08727 hypothetical protein; Validated
Probab=98.15 E-value=4.8e-05 Score=82.37 Aligned_cols=148 Identities=21% Similarity=0.169 Sum_probs=86.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.|+|..|+|||+||+++++...+. ...+.|+++.+ ....+. . .+. .+ .+.-
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~-~~~~~y~~~~~------~~~~~~--------------~---~~~-~l-~~~d 95 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQA-GRSSAYLPLQA------AAGRLR--------------D---ALE-AL-EGRS 95 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCcEEEEeHHH------hhhhHH--------------H---HHH-HH-hcCC
Confidence 469999999999999999998764333 23455665322 111111 1 111 11 2335
Q ss_pred EEEEeCCCcCC-hhhHHHhhcccCC--CCCCcEEEEEccchh---------hhhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 262 LIVLDDVWSER-YDLWQALKSPFMA--GAPGSRIIVTTRSMD---------VASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 262 LlVlDdv~~~~-~~~~~~~~~~l~~--~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
+||+||+.... ...|....-.+.. ...|..||+|++... +...+.. ...+++++++.++-.+++.+
T Consensus 96 lLiIDDi~~l~~~~~~~~~lf~l~n~~~~~~~~vI~ts~~~p~~l~~~~~dL~SRl~~--~~~~~l~~~~~e~~~~iL~~ 173 (233)
T PRK08727 96 LVALDGLESIAGQREDEVALFDFHNRARAAGITLLYTARQMPDGLALVLPDLRSRLAQ--CIRIGLPVLDDVARAAVLRE 173 (233)
T ss_pred EEEEeCcccccCChHHHHHHHHHHHHHHHcCCeEEEECCCChhhhhhhhHHHHHHHhc--CceEEecCCCHHHHHHHHHH
Confidence 89999995321 1234322222221 124667999998522 2222222 23456999999999999998
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
++...+-. --.+...-|++.+.|-.-++
T Consensus 174 ~a~~~~l~----l~~e~~~~La~~~~rd~r~~ 201 (233)
T PRK08727 174 RAQRRGLA----LDEAAIDWLLTHGERELAGL 201 (233)
T ss_pred HHHHcCCC----CCHHHHHHHHHhCCCCHHHH
Confidence 87543211 12567778888888766554
No 97
>PRK08084 DNA replication initiation factor; Provisional
Probab=98.14 E-value=4.6e-05 Score=82.64 Aligned_cols=154 Identities=16% Similarity=0.124 Sum_probs=88.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.|+|+.|+|||+||+++++.... .-..+.++.+..... ...+..+.+. . --
T Consensus 46 ~~l~l~Gp~G~GKThLl~a~~~~~~~-~~~~v~y~~~~~~~~--------------------~~~~~~~~~~----~-~d 99 (235)
T PRK08084 46 GYIYLWSREGAGRSHLLHAACAELSQ-RGRAVGYVPLDKRAW--------------------FVPEVLEGME----Q-LS 99 (235)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHh-CCCeEEEEEHHHHhh--------------------hhHHHHHHhh----h-CC
Confidence 47899999999999999999875322 222345655532100 0011111111 1 23
Q ss_pred EEEEeCCCcCC-hhhHHHhh-cccCCC-CCC-cEEEEEccch---------hhhhhcCCCcceeecccCCChhhHHHHHH
Q 000594 262 LIVLDDVWSER-YDLWQALK-SPFMAG-APG-SRIIVTTRSM---------DVASTMGSGKNYELELKLLSDDDRWSVFV 328 (1402)
Q Consensus 262 LlVlDdv~~~~-~~~~~~~~-~~l~~~-~~g-s~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~lf~ 328 (1402)
+|++||+.... ...|+... ..+... ..| .++|+||+.. ++...+....+ ++++++++++-.+++.
T Consensus 100 lliiDdi~~~~~~~~~~~~lf~l~n~~~e~g~~~li~ts~~~p~~l~~~~~~L~SRl~~g~~--~~l~~~~~~~~~~~l~ 177 (235)
T PRK08084 100 LVCIDNIECIAGDELWEMAIFDLYNRILESGRTRLLITGDRPPRQLNLGLPDLASRLDWGQI--YKLQPLSDEEKLQALQ 177 (235)
T ss_pred EEEEeChhhhcCCHHHHHHHHHHHHHHHHcCCCeEEEeCCCChHHcCcccHHHHHHHhCCce--eeecCCCHHHHHHHHH
Confidence 78999995421 13454322 222111 133 4799998754 23333333333 4599999999999998
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhh
Q 000594 329 NHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGL 367 (1402)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 367 (1402)
+++...+- . --+++..-|++.+.|..-++..+-..
T Consensus 178 ~~a~~~~~-~---l~~~v~~~L~~~~~~d~r~l~~~l~~ 212 (235)
T PRK08084 178 LRARLRGF-E---LPEDVGRFLLKRLDREMRTLFMTLDQ 212 (235)
T ss_pred HHHHHcCC-C---CCHHHHHHHHHhhcCCHHHHHHHHHH
Confidence 87743221 1 12677888899988877665544433
No 98
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=98.14 E-value=4.8e-06 Score=92.83 Aligned_cols=99 Identities=21% Similarity=0.222 Sum_probs=66.9
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCC--CHHHHHHHHHHHhcCCCCCc
Q 000594 165 RILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDF--DVLRISKAILESITLSPCDL 242 (1402)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~--~~~~~~~~i~~~~~~~~~~~ 242 (1402)
++++++..- +.-.-..|+|++|+||||||++||+.....+|+.++||.+.+.. ++.++++.+...+-....+.
T Consensus 158 rvID~l~PI-----GkGQR~lIvgppGvGKTTLaK~Ian~I~~nhFDv~~~VvLIgER~~EVtdiqrsIlg~vv~st~d~ 232 (416)
T PRK09376 158 RIIDLIAPI-----GKGQRGLIVAPPKAGKTVLLQNIANSITTNHPEVHLIVLLIDERPEEVTDMQRSVKGEVVASTFDE 232 (416)
T ss_pred eeeeeeccc-----ccCceEEEeCCCCCChhHHHHHHHHHHHhhcCCeEEEEEEeCCchhHHHHHHHHhcCcEEEECCCC
Confidence 456666443 22346889999999999999999997655589999999999887 77788888874433332222
Q ss_pred CchHHH-----HHHHHHH--hcCCeEEEEEeCC
Q 000594 243 KDLNSV-----QLKLKEA--VFKKKFLIVLDDV 268 (1402)
Q Consensus 243 ~~~~~~-----~~~l~~~--l~~k~~LlVlDdv 268 (1402)
...... .-...++ -.+++++|++|++
T Consensus 233 ~~~~~~~~a~~~ie~Ae~~~e~G~dVlL~iDsI 265 (416)
T PRK09376 233 PAERHVQVAEMVIEKAKRLVEHGKDVVILLDSI 265 (416)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEECh
Confidence 111111 1111111 3589999999999
No 99
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.12 E-value=5.7e-05 Score=91.50 Aligned_cols=195 Identities=15% Similarity=0.120 Sum_probs=107.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+......- +. ............+..
T Consensus 16 ~divGq~~v~~~L~~~i~~~~-----~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~-----~~-~~pcg~C~~C~~i~~ 84 (527)
T PRK14969 16 SELVGQEHVVRALTNALEQQR-----LHHAYLFTGTRGVGKTTLARILAKSLNCETG-----VT-ATPCGVCSACLEIDS 84 (527)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCEEEEEECCCCCCHHHHHHHHHHHhcCCCC-----CC-CCCCCCCHHHHHHhc
Confidence 468999999999999886532 2346789999999999999998765311100 00 000000001111100
Q ss_pred H-----hcCCCCCcCchHHHHHHHHH----HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhh
Q 000594 234 S-----ITLSPCDLKDLNSVQLKLKE----AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAS 303 (1402)
Q Consensus 234 ~-----~~~~~~~~~~~~~~~~~l~~----~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 303 (1402)
. +..........+++...+.. -..+++-++|+|++..-.....+.+...+......+.+|++|.+ ..+..
T Consensus 85 ~~~~d~~ei~~~~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls~~a~naLLK~LEepp~~~~fIL~t~d~~kil~ 164 (527)
T PRK14969 85 GRFVDLIEVDAASNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLSKSAFNAMLKTLEEPPEHVKFILATTDPQKIPV 164 (527)
T ss_pred CCCCceeEeeccccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCCHHHHHHHHHHHhCCCCCEEEEEEeCChhhCch
Confidence 0 00000000111222111111 11356779999999665555677777777654456666655544 33322
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARAL 364 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 364 (1402)
.+. .....+++++++.++..+.+.+.+-..+.. .-.+..+.|++.++|.+- |+..+
T Consensus 165 tI~-SRc~~~~f~~l~~~~i~~~L~~il~~egi~----~~~~al~~la~~s~Gslr~al~ll 221 (527)
T PRK14969 165 TVL-SRCLQFNLKQMPPPLIVSHLQHILEQENIP----FDATALQLLARAAAGSMRDALSLL 221 (527)
T ss_pred hHH-HHHHHHhcCCCCHHHHHHHHHHHHHHcCCC----CCHHHHHHHHHHcCCCHHHHHHHH
Confidence 211 113446699999999988887665322211 124566789999999775 44444
No 100
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.11 E-value=0.00019 Score=86.42 Aligned_cols=198 Identities=14% Similarity=0.126 Sum_probs=113.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|.+..++.|.+++.... -...+.++|+.|+||||+|+.+++...... .+. ..++.-...+.|.
T Consensus 16 ~dIiGQe~v~~~L~~ai~~~r-----i~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~-------~pCg~C~sC~~i~ 83 (624)
T PRK14959 16 AEVAGQETVKAILSRAAQENR-----VAPAYLFSGTRGVGKTTIARIFAKALNCETAPTG-------EPCNTCEQCRKVT 83 (624)
T ss_pred HHhcCCHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhccccCCCCC-------CCCcccHHHHHHh
Confidence 467899988888888886532 235788999999999999999887542211 100 0111111122221
Q ss_pred HHhcCC--------CCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhh
Q 000594 233 ESITLS--------PCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVA 302 (1402)
Q Consensus 233 ~~~~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 302 (1402)
...... .....+...+...+.. -..+++-++|+|++..-..+.++.+...+..-.....+|++|.. ..+.
T Consensus 84 ~g~hpDv~eId~a~~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt~~a~naLLk~LEEP~~~~ifILaTt~~~kll 163 (624)
T PRK14959 84 QGMHVDVVEIDGASNRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLTREAFNALLKTLEEPPARVTFVLATTEPHKFP 163 (624)
T ss_pred cCCCCceEEEecccccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCCHHHHHHHHHHhhccCCCEEEEEecCChhhhh
Confidence 111000 0001111122112211 12356679999999666556677777776543345556555544 4444
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHhhh
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP-LAARALGGLL 368 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~~l 368 (1402)
..+.. ....+++++++.++..+.+.+.+...+... -.+.++.|++.++|.+ .|+..+...+
T Consensus 164 ~TI~S-Rcq~i~F~pLs~~eL~~~L~~il~~egi~i----d~eal~lIA~~s~GdlR~Al~lLeqll 225 (624)
T PRK14959 164 VTIVS-RCQHFTFTRLSEAGLEAHLTKVLGREGVDY----DPAAVRLIARRAAGSVRDSMSLLGQVL 225 (624)
T ss_pred HHHHh-hhhccccCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 32221 123466999999999988887664332211 1567788999999965 6777776554
No 101
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=98.10 E-value=3.8e-05 Score=95.55 Aligned_cols=173 Identities=21% Similarity=0.214 Sum_probs=94.8
Q ss_pred CccccchHHHH---HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKA---RILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~---~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.+|+|.+..+. .+.+.+.. .....+.++|++|+||||+|+.+++. ....| +.+......
T Consensus 28 dd~vGQe~ii~~~~~L~~~i~~------~~~~slLL~GPpGtGKTTLA~aIA~~-~~~~f-----~~lna~~~~------ 89 (725)
T PRK13341 28 EEFVGQDHILGEGRLLRRAIKA------DRVGSLILYGPPGVGKTTLARIIANH-TRAHF-----SSLNAVLAG------ 89 (725)
T ss_pred HHhcCcHHHhhhhHHHHHHHhc------CCCceEEEECCCCCCHHHHHHHHHHH-hcCcc-----eeehhhhhh------
Confidence 45889888774 35555533 33346789999999999999999975 33333 111110000
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHh--cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEE--ccch--hhhhh
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAV--FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT--TRSM--DVAST 304 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT--tR~~--~v~~~ 304 (1402)
..+..+......+.+ .+++.+||+||++.-....++.+...+. .|+.++|+ |.+. .+...
T Consensus 90 -----------i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~Ln~~qQdaLL~~lE---~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 90 -----------VKDLRAEVDRAKERLERHGKRTILFIDEVHRFNKAQQDALLPWVE---NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred -----------hHHHHHHHHHHHHHhhhcCCceEEEEeChhhCCHHHHHHHHHHhc---CceEEEEEecCCChHhhhhhH
Confidence 001111111221211 2567899999997655455666654332 35555553 3432 12222
Q ss_pred cCCCcceeecccCCChhhHHHHHHHhhcCCCC---CCCCchHHHHHHHHHHHcCCChH
Q 000594 305 MGSGKNYELELKLLSDDDRWSVFVNHAFEGRD---AGTHGNFESARQRVVEKCKGLPL 359 (1402)
Q Consensus 305 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~---~~~~~~~~~~~~~i~~~~~g~PL 359 (1402)
.... ...+.+++++.++...++.+.+-.... .....--.+..+.|++.+.|..-
T Consensus 156 L~SR-~~v~~l~pLs~edi~~IL~~~l~~~~~~~g~~~v~I~deaL~~La~~s~GD~R 212 (725)
T PRK13341 156 LVSR-SRLFRLKSLSDEDLHQLLKRALQDKERGYGDRKVDLEPEAEKHLVDVANGDAR 212 (725)
T ss_pred hhcc-ccceecCCCCHHHHHHHHHHHHHHHHhhcCCcccCCCHHHHHHHHHhCCCCHH
Confidence 2111 234569999999999998876531000 00011124566778888887643
No 102
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.09 E-value=5.1e-08 Score=100.75 Aligned_cols=180 Identities=14% Similarity=0.105 Sum_probs=95.2
Q ss_pred ccccEEEEeecCcc-cccccccCCcccccEEeecCCCCcCccccccCCCCCCCeEeeecCCCCcccCCCCC---CCcccc
Q 000594 1137 VAVEELTIISCSNL-ESIAERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISISGCHNLASLPEDAL---PSNLVG 1212 (1402)
Q Consensus 1137 ~~L~~L~L~~~~~~-~~~~~~~~~l~~L~~L~ls~c~~l~~l~~~l~~l~~L~~L~l~~c~~l~~l~~~~~---~~~L~~ 1212 (1402)
+.|++|||+.-... ..+...+..|.+|+.|.+.++..-..+-..++.-.+|+.|++++|+.+++...... ++.|.+
T Consensus 185 sRlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~ 264 (419)
T KOG2120|consen 185 SRLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDE 264 (419)
T ss_pred hhhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhh
Confidence 45888898874432 23334456778899998888765566666677778899999999988877643221 124555
Q ss_pred eeeccccccCCCCCC---CCCCCccEEEeccCCCccccCCCCCCCCCceeEeccCCCC--ccccccccCCcCccceeeec
Q 000594 1213 VLIENCDKLKAPLPT---GKLSSLQQLFLKKCPGIVFFPEEGLSTNLTSVGISGDNIY--KPLVKWGFHKLTSLRELSIH 1287 (1402)
Q Consensus 1213 L~l~~c~~l~~~~~~---~~l~~L~~L~l~~c~~l~~l~~~~~~~~L~~L~l~~~~~~--~~~~~~~l~~l~~L~~L~l~ 1287 (1402)
|+++.|...+..... .--+.|+.|+|+|| ... +.-....-..+++|.+|||+
T Consensus 265 LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~-----------------------rrnl~~sh~~tL~~rcp~l~~LDLS 321 (419)
T KOG2120|consen 265 LNLSWCFLFTEKVTVAVAHISETLTQLNLSGY-----------------------RRNLQKSHLSTLVRRCPNLVHLDLS 321 (419)
T ss_pred cCchHhhccchhhhHHHhhhchhhhhhhhhhh-----------------------HhhhhhhHHHHHHHhCCceeeeccc
Confidence 555555443331111 22234444555544 322 11011112244555555555
Q ss_pred CCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCeeeccCC
Q 000594 1288 GCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISC 1341 (1402)
Q Consensus 1288 ~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~L~l~~c 1341 (1402)
+|..+.. .....+-.++.|++|.++.|..+---..-.+...|+|.+|++.+|
T Consensus 322 D~v~l~~--~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 322 DSVMLKN--DCFQEFFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred cccccCc--hHHHHHHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccc
Confidence 5443332 111112234455555555554322111113456688888888886
No 103
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=98.06 E-value=0.00013 Score=89.26 Aligned_cols=193 Identities=15% Similarity=0.108 Sum_probs=109.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+++.....+... .+ .+.........
T Consensus 18 ~dIiGQe~~v~~L~~aI~~~r-----l~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~-~~-------~pC~~C~~~~~ 84 (725)
T PRK07133 18 DDIVGQDHIVQTLKNIIKSNK-----ISHAYLFSGPRGTGKTSVAKIFANALNCSHKTD-LL-------EPCQECIENVN 84 (725)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCcHHHHHHHHHHHhcccccCC-CC-------CchhHHHHhhc
Confidence 468999999999999986542 235678999999999999999886542211100 00 00000000000
Q ss_pred -H---hcCCC---CCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE-EEccchhhhhh
Q 000594 234 -S---ITLSP---CDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII-VTTRSMDVAST 304 (1402)
Q Consensus 234 -~---~~~~~---~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii-vTtR~~~v~~~ 304 (1402)
. +.... ....++.++++.+... ..+++-++|+|++..-....+..+...+-.......+| +|++...+...
T Consensus 85 ~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT~~A~NALLKtLEEPP~~tifILaTte~~KLl~T 164 (725)
T PRK07133 85 NSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLSKSAFNALLKTLEEPPKHVIFILATTEVHKIPLT 164 (725)
T ss_pred CCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCCHHHHHHHHHHhhcCCCceEEEEEcCChhhhhHH
Confidence 0 00000 0011122333222211 23566689999996655567777777665444455544 55554444433
Q ss_pred cCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000594 305 MGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARAL 364 (1402)
Q Consensus 305 ~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 364 (1402)
... ....+++.+++.++..+.+...+-..+-.. -.+.++.|++.++|.+- |+..+
T Consensus 165 I~S-Rcq~ieF~~L~~eeI~~~L~~il~kegI~i----d~eAl~~LA~lS~GslR~AlslL 220 (725)
T PRK07133 165 ILS-RVQRFNFRRISEDEIVSRLEFILEKENISY----EKNALKLIAKLSSGSLRDALSIA 220 (725)
T ss_pred HHh-hceeEEccCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 222 124566999999999888877653322111 14567789999999764 44433
No 104
>PLN03150 hypothetical protein; Provisional
Probab=98.06 E-value=3.8e-06 Score=104.69 Aligned_cols=97 Identities=23% Similarity=0.444 Sum_probs=84.3
Q ss_pred hhhhhccCCCcccEEEecccccc-cccccccccccccceeccCcccc-ccchhhhcCCCCcEEecCCccccccCchhhhc
Q 000594 561 VLSDLLPKCKKLRVLSLGRYLIT-EVPVSIGCLKHLRYLNFSNSWIQ-CLPEVITSLFNLEILILSNCWFLLKLPSSIGN 638 (1402)
Q Consensus 561 ~~~~~~~~l~~Lr~L~L~~~~i~-~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~ 638 (1402)
.++..+..+++|+.|+|++|.+. .+|..++.+.+|++|+|++|.+. .+|+.+++|++|++|+|++|.+.+.+|..++.
T Consensus 433 ~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~ 512 (623)
T PLN03150 433 FIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGG 512 (623)
T ss_pred cCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhh
Confidence 34556889999999999999987 78999999999999999999998 78999999999999999999989999999876
Q ss_pred c-cccccccccCcccccccc
Q 000594 639 L-VNLHHLDIEGAYQLCELP 657 (1402)
Q Consensus 639 L-~~L~~L~l~~~~~l~~lp 657 (1402)
+ .++..+++.+|..+...|
T Consensus 513 ~~~~~~~l~~~~N~~lc~~p 532 (623)
T PLN03150 513 RLLHRASFNFTDNAGLCGIP 532 (623)
T ss_pred ccccCceEEecCCccccCCC
Confidence 4 577888888886544433
No 105
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=98.04 E-value=7.5e-05 Score=81.14 Aligned_cols=153 Identities=22% Similarity=0.149 Sum_probs=86.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+.+.|+|..|+|||+||+++++......+ ...+++..... .. + ... ...-
T Consensus 43 ~~~~l~G~~G~GKT~La~ai~~~~~~~~~-~~~~i~~~~~~------~~----~------------------~~~-~~~~ 92 (227)
T PRK08903 43 RFFYLWGEAGSGRSHLLQALVADASYGGR-NARYLDAASPL------LA----F------------------DFD-PEAE 92 (227)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCC-cEEEEehHHhH------HH----H------------------hhc-ccCC
Confidence 57889999999999999999876433222 23344432211 00 0 011 2334
Q ss_pred EEEEeCCCcCChhhHHHhhcccCCC-CCCc-EEEEEccchhhhhhcCC------CcceeecccCCChhhHHHHHHHhhcC
Q 000594 262 LIVLDDVWSERYDLWQALKSPFMAG-APGS-RIIVTTRSMDVASTMGS------GKNYELELKLLSDDDRWSVFVNHAFE 333 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~l~~~-~~gs-~iivTtR~~~v~~~~~~------~~~~~~~l~~L~~~~~~~lf~~~a~~ 333 (1402)
+||+||+..-+...-+.+...+... ..+. .||+|++.......... .....++++++++++-..++.+.+-.
T Consensus 93 ~liiDdi~~l~~~~~~~L~~~~~~~~~~~~~~vl~~~~~~~~~~~l~~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~ 172 (227)
T PRK08903 93 LYAVDDVERLDDAQQIALFNLFNRVRAHGQGALLVAGPAAPLALPLREDLRTRLGWGLVYELKPLSDADKIAALKAAAAE 172 (227)
T ss_pred EEEEeChhhcCchHHHHHHHHHHHHHHcCCcEEEEeCCCCHHhCCCCHHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHH
Confidence 7899999543222222333333221 2344 46777765432221111 11245669999998877777665422
Q ss_pred CCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 334 GRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 334 ~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
.+-. --++..+.+++...|.+..+..+...+
T Consensus 173 ~~v~----l~~~al~~L~~~~~gn~~~l~~~l~~l 203 (227)
T PRK08903 173 RGLQ----LADEVPDYLLTHFRRDMPSLMALLDAL 203 (227)
T ss_pred cCCC----CCHHHHHHHHHhccCCHHHHHHHHHHH
Confidence 2211 125677888889999998887776655
No 106
>PRK09087 hypothetical protein; Validated
Probab=98.04 E-value=0.00013 Score=78.19 Aligned_cols=141 Identities=16% Similarity=0.108 Sum_probs=84.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+.+.|+|..|+|||+|++.+++.. . ..+++.. .+..++...+ .+ -
T Consensus 45 ~~l~l~G~~GsGKThLl~~~~~~~-~-----~~~i~~~------~~~~~~~~~~---------------------~~--~ 89 (226)
T PRK09087 45 PVVVLAGPVGSGKTHLASIWREKS-D-----ALLIHPN------EIGSDAANAA---------------------AE--G 89 (226)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhc-C-----CEEecHH------HcchHHHHhh---------------------hc--C
Confidence 568999999999999999988642 1 1133321 1111111111 11 2
Q ss_pred EEEEeCCCcC--ChhhHHHhhcccCCCCCCcEEEEEccc---------hhhhhhcCCCcceeecccCCChhhHHHHHHHh
Q 000594 262 LIVLDDVWSE--RYDLWQALKSPFMAGAPGSRIIVTTRS---------MDVASTMGSGKNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 262 LlVlDdv~~~--~~~~~~~~~~~l~~~~~gs~iivTtR~---------~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
+|++||+... +.+.+-.+...+. ..|..||+|++. ++....+.... .+++++++.++-.+++.++
T Consensus 90 ~l~iDDi~~~~~~~~~lf~l~n~~~--~~g~~ilits~~~p~~~~~~~~dL~SRl~~gl--~~~l~~pd~e~~~~iL~~~ 165 (226)
T PRK09087 90 PVLIEDIDAGGFDETGLFHLINSVR--QAGTSLLMTSRLWPSSWNVKLPDLKSRLKAAT--VVEIGEPDDALLSQVIFKL 165 (226)
T ss_pred eEEEECCCCCCCCHHHHHHHHHHHH--hCCCeEEEECCCChHHhccccccHHHHHhCCc--eeecCCCCHHHHHHHHHHH
Confidence 7888999432 2223333333333 246779998874 23333333333 3559999999999999988
Q ss_pred hcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000594 331 AFEGRDAGTHGNFESARQRVVEKCKGLPLAARALG 365 (1402)
Q Consensus 331 a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 365 (1402)
+-..+-. --+++..-|++.+.|..-++..+-
T Consensus 166 ~~~~~~~----l~~ev~~~La~~~~r~~~~l~~~l 196 (226)
T PRK09087 166 FADRQLY----VDPHVVYYLVSRMERSLFAAQTIV 196 (226)
T ss_pred HHHcCCC----CCHHHHHHHHHHhhhhHHHHHHHH
Confidence 8432211 126777888888888877766433
No 107
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.04 E-value=2.8e-06 Score=101.50 Aligned_cols=105 Identities=30% Similarity=0.386 Sum_probs=89.9
Q ss_pred hhccCCC-cccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccc
Q 000594 564 DLLPKCK-KLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNL 642 (1402)
Q Consensus 564 ~~~~~l~-~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L 642 (1402)
.....++ +|+.|++++|.+..+|..++.+++|+.|++++|.+..+|...+.+.+|+.|++++| .+..+|..+..+.+|
T Consensus 133 ~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ls~N-~i~~l~~~~~~~~~L 211 (394)
T COG4886 133 PLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLDLSGN-KISDLPPEIELLSAL 211 (394)
T ss_pred cccccchhhcccccccccchhhhhhhhhccccccccccCCchhhhhhhhhhhhhhhhheeccCC-ccccCchhhhhhhhh
Confidence 3344553 89999999999999998899999999999999999999999889999999999999 578999988888899
Q ss_pred ccccccCcccccccccCccccccccccc
Q 000594 643 HHLDIEGAYQLCELPLGMKELKCLRTLT 670 (1402)
Q Consensus 643 ~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1402)
++|.+++|. ....|..+.++.++..|.
T Consensus 212 ~~l~~~~N~-~~~~~~~~~~~~~l~~l~ 238 (394)
T COG4886 212 EELDLSNNS-IIELLSSLSNLKNLSGLE 238 (394)
T ss_pred hhhhhcCCc-ceecchhhhhcccccccc
Confidence 999999996 455666666666666553
No 108
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=98.02 E-value=0.00014 Score=88.67 Aligned_cols=197 Identities=16% Similarity=0.136 Sum_probs=112.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCc--eeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEP--KAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~--~~wv~~~~~~~~~~~~~~ 230 (1402)
.+++|.+..++.+.+++..+. -...+.++|+.|+||||+|+.+++...... ... ..+- ........+.
T Consensus 24 ~dliGq~~~v~~L~~~~~~gr-----i~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~----~cg~c~~C~~ 94 (598)
T PRK09111 24 DDLIGQEAMVRTLTNAFETGR-----IAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTID----LCGVGEHCQA 94 (598)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccc----cCcccHHHHH
Confidence 568999999999999886542 234688999999999999999987542111 100 0000 0111111222
Q ss_pred HHHHhcCC--------CCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchh
Q 000594 231 ILESITLS--------PCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMD 300 (1402)
Q Consensus 231 i~~~~~~~--------~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~ 300 (1402)
|....... ....+++.++.+.++. -..+++-++|+|++..-.....+.+...+-.-..++.+|++| ....
T Consensus 95 i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls~~a~naLLKtLEePp~~~~fIl~tte~~k 174 (598)
T PRK09111 95 IMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHVKFIFATTEIRK 174 (598)
T ss_pred HhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCCHHHHHHHHHHHHhCCCCeEEEEEeCChhh
Confidence 22211100 0011122222222221 112455679999996655556777777765545566666554 4444
Q ss_pred hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 301 v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
+...+.. ....+++++++.++....+.+.+-..+.... .+..+.|++.++|.+.-+...
T Consensus 175 ll~tI~S-Rcq~~~f~~l~~~el~~~L~~i~~kegi~i~----~eAl~lIa~~a~Gdlr~al~~ 233 (598)
T PRK09111 175 VPVTVLS-RCQRFDLRRIEADVLAAHLSRIAAKEGVEVE----DEALALIARAAEGSVRDGLSL 233 (598)
T ss_pred hhHHHHh-heeEEEecCCCHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 4333222 2345679999999999988887643322111 466788899999988655433
No 109
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.02 E-value=8.1e-05 Score=91.97 Aligned_cols=196 Identities=15% Similarity=0.154 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..++.+..++.... -...+.++|+.|+||||+|+.+++.......+. ....++.....+.+..
T Consensus 16 ~eiiGq~~~~~~L~~~i~~~~-----i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~-----~~~~c~~c~~c~~i~~ 85 (585)
T PRK14950 16 AELVGQEHVVQTLRNAIAEGR-----VAHAYLFTGPRGVGKTSTARILAKAVNCTTNDP-----KGRPCGTCEMCRAIAE 85 (585)
T ss_pred HHhcCCHHHHHHHHHHHHhCC-----CceEEEEECCCCCCHHHHHHHHHHHhcCCCCCC-----CCCCCccCHHHHHHhc
Confidence 468999999999988886532 234678999999999999999986532111000 0011111223333332
Q ss_pred HhcCC-----CCCcCchHH---HHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhh
Q 000594 234 SITLS-----PCDLKDLNS---VQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAS 303 (1402)
Q Consensus 234 ~~~~~-----~~~~~~~~~---~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 303 (1402)
..... .......++ +...+... ..+++-++|+|++..-..+..+.+...+......+.+|++|.+ ..+..
T Consensus 86 ~~~~d~~~i~~~~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~~~a~naLLk~LEepp~~tv~Il~t~~~~kll~ 165 (585)
T PRK14950 86 GSAVDVIEMDAASHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLSTAAFNALLKTLEEPPPHAIFILATTEVHKVPA 165 (585)
T ss_pred CCCCeEEEEeccccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCCHHHHHHHHHHHhcCCCCeEEEEEeCChhhhhH
Confidence 21110 001111222 22222111 1256678999999654445666776666554456666665543 33333
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.... ....+++++++.++....+.+.+...+... -.+.+..|++.++|.+..+...
T Consensus 166 tI~S-R~~~i~f~~l~~~el~~~L~~~a~~egl~i----~~eal~~La~~s~Gdlr~al~~ 221 (585)
T PRK14950 166 TILS-RCQRFDFHRHSVADMAAHLRKIAAAEGINL----EPGALEAIARAATGSMRDAENL 221 (585)
T ss_pred HHHh-ccceeeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHH
Confidence 2221 123456889999998888887764332211 1467788999999988655443
No 110
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=98.00 E-value=0.00022 Score=85.04 Aligned_cols=195 Identities=13% Similarity=0.121 Sum_probs=111.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|-+..++.+..++... .-..+..++|+.|+||||+|+.+++.......... .....-...+.+..
T Consensus 14 deiiGqe~v~~~L~~~I~~g-----rl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~------~pC~~C~~C~~~~~ 82 (535)
T PRK08451 14 DELIGQESVSKTLSLALDNN-----RLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSS------TPCDTCIQCQSALE 82 (535)
T ss_pred HHccCcHHHHHHHHHHHHcC-----CCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCC------CCCcccHHHHHHhh
Confidence 46899999999999988653 22356789999999999999998765422111000 00000000111100
Q ss_pred HhcC-----CCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhh
Q 000594 234 SITL-----SPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVAS 303 (1402)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~ 303 (1402)
.... ........+++...+... ..+++-++|+|++..-..+..+.+...+-.....+++|++|.+. .+..
T Consensus 83 ~~h~dv~eldaas~~gId~IRelie~~~~~P~~~~~KVvIIDEad~Lt~~A~NALLK~LEEpp~~t~FIL~ttd~~kL~~ 162 (535)
T PRK08451 83 NRHIDIIEMDAASNRGIDDIRELIEQTKYKPSMARFKIFIIDEVHMLTKEAFNALLKTLEEPPSYVKFILATTDPLKLPA 162 (535)
T ss_pred cCCCeEEEeccccccCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHHhhcCCceEEEEEECChhhCch
Confidence 0000 000001122222222210 12456689999997766667777777776555667766666553 2322
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.... ....+++.+++.++..+.+.+.+-..+... -.+.++.|++.++|.+--+..+
T Consensus 163 tI~S-Rc~~~~F~~Ls~~ei~~~L~~Il~~EGi~i----~~~Al~~Ia~~s~GdlR~alnl 218 (535)
T PRK08451 163 TILS-RTQHFRFKQIPQNSIISHLKTILEKEGVSY----EPEALEILARSGNGSLRDTLTL 218 (535)
T ss_pred HHHh-hceeEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCcHHHHHHH
Confidence 2222 234567999999999888877664332211 1567788999999988554444
No 111
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00017 Score=84.70 Aligned_cols=180 Identities=16% Similarity=0.163 Sum_probs=103.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc-------ccCceeEEEeC--CCCCH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-------AFEPKAWVCVS--HDFDV 224 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-------~f~~~~wv~~~--~~~~~ 224 (1402)
.+++|.+..++.+.+++... .-.+.+.++|+.|+||||+|+.+.+..... .|...+ +... .....
T Consensus 17 ~~iig~~~~~~~l~~~i~~~-----~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~-~~l~~~~~~~~ 90 (367)
T PRK14970 17 DDVVGQSHITNTLLNAIENN-----HLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNI-FELDAASNNSV 90 (367)
T ss_pred HhcCCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcce-EEeccccCCCH
Confidence 45789999999999998653 223578899999999999999987653221 111111 1111 00001
Q ss_pred HHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchhhhh
Q 000594 225 LRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDVAS 303 (1402)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v~~ 303 (1402)
+..+++++++... -..+++-++|+|++..-....++.+...+......+.+|++| ....+..
T Consensus 91 -~~i~~l~~~~~~~----------------p~~~~~kiviIDE~~~l~~~~~~~ll~~le~~~~~~~~Il~~~~~~kl~~ 153 (367)
T PRK14970 91 -DDIRNLIDQVRIP----------------PQTGKYKIYIIDEVHMLSSAAFNAFLKTLEEPPAHAIFILATTEKHKIIP 153 (367)
T ss_pred -HHHHHHHHHHhhc----------------cccCCcEEEEEeChhhcCHHHHHHHHHHHhCCCCceEEEEEeCCcccCCH
Confidence 1111111111100 112455589999985544455666666554433445555555 3333332
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.... ....+++++++.++....+.+.+...+-... .+.++.+++.++|.+-.+
T Consensus 154 ~l~s-r~~~v~~~~~~~~~l~~~l~~~~~~~g~~i~----~~al~~l~~~~~gdlr~~ 206 (367)
T PRK14970 154 TILS-RCQIFDFKRITIKDIKEHLAGIAVKEGIKFE----DDALHIIAQKADGALRDA 206 (367)
T ss_pred HHHh-cceeEecCCccHHHHHHHHHHHHHHcCCCCC----HHHHHHHHHhCCCCHHHH
Confidence 2221 1234569999999999888877743332111 467788889999866533
No 112
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=98.00 E-value=0.00017 Score=87.34 Aligned_cols=198 Identities=15% Similarity=0.069 Sum_probs=114.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|.+..++.|..++... .-...+.++|+.|+||||+|+.+++.....+ .+ + ...+.-...+.+.
T Consensus 13 ~eivGq~~i~~~L~~~i~~~-----r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~---~----~pCg~C~~C~~i~ 80 (584)
T PRK14952 13 AEVVGQEHVTEPLSSALDAG-----RINHAYLFSGPRGCGKTSSARILARSLNCAQGPT---A----TPCGVCESCVALA 80 (584)
T ss_pred HHhcCcHHHHHHHHHHHHcC-----CCCeEEEEECCCCCCHHHHHHHHHHHhccccCCC---C----CcccccHHHHHhh
Confidence 46899999999999998653 2234678999999999999999987542111 10 0 0111111111221
Q ss_pred HHh---------cCC-CCCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE-Eccchh
Q 000594 233 ESI---------TLS-PCDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMD 300 (1402)
Q Consensus 233 ~~~---------~~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~ 300 (1402)
..- ... ....+++.++.+.+... ..+++-++|+|++..-.....+.+...+..-.....+|+ ||....
T Consensus 81 ~~~~~~~dvieidaas~~gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt~~A~NALLK~LEEpp~~~~fIL~tte~~k 160 (584)
T PRK14952 81 PNGPGSIDVVELDAASHGGVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVTTAGFNALLKIVEEPPEHLIFIFATTEPEK 160 (584)
T ss_pred cccCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCceEEEEECCCcCCHHHHHHHHHHHhcCCCCeEEEEEeCChHh
Confidence 100 000 00111222222222211 135566899999977666777788777765555666555 444444
Q ss_pred hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHHHhhh
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARALGGLL 368 (1402)
Q Consensus 301 v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~~~~l 368 (1402)
+...+... ...+++++++.++..+.+.+.+-..+... -.+....|++.++|.+- |+..+-.++
T Consensus 161 ll~TI~SR-c~~~~F~~l~~~~i~~~L~~i~~~egi~i----~~~al~~Ia~~s~GdlR~aln~Ldql~ 224 (584)
T PRK14952 161 VLPTIRSR-THHYPFRLLPPRTMRALIARICEQEGVVV----DDAVYPLVIRAGGGSPRDTLSVLDQLL 224 (584)
T ss_pred hHHHHHHh-ceEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 44333222 34566999999998888877664332211 14566778999999774 444444433
No 113
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.98 E-value=0.00029 Score=84.27 Aligned_cols=192 Identities=15% Similarity=0.062 Sum_probs=106.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc--c-c-cCceeEEEeCCCCCHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT--E-A-FEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~--~-~-f~~~~wv~~~~~~~~~~~~~ 229 (1402)
.+++|.+..+..+..++.... -...+.++|+.|+||||+|+.++..... . . .+|.. ..+ ..
T Consensus 16 ~diiGq~~i~~~L~~~i~~~~-----i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~------c~n----c~ 80 (486)
T PRK14953 16 KEVIGQEIVVRILKNAVKLQR-----VSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGK------CEN----CV 80 (486)
T ss_pred HHccChHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCc------cHH----HH
Confidence 468899999999999986532 2346778999999999999998764311 0 0 00100 000 00
Q ss_pred HHHH-------HhcCCC-CCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cch
Q 000594 230 AILE-------SITLSP-CDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSM 299 (1402)
Q Consensus 230 ~i~~-------~~~~~~-~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~ 299 (1402)
.+.. .+.... ....+...+...+.. -..+++-++|+|++..-.....+.+...+........+|++| +..
T Consensus 81 ~i~~g~~~d~~eidaas~~gvd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt~~a~naLLk~LEepp~~~v~Il~tt~~~ 160 (486)
T PRK14953 81 EIDKGSFPDLIEIDAASNRGIDDIRALRDAVSYTPIKGKYKVYIIDEAHMLTKEAFNALLKTLEEPPPRTIFILCTTEYD 160 (486)
T ss_pred HHhcCCCCcEEEEeCccCCCHHHHHHHHHHHHhCcccCCeeEEEEEChhhcCHHHHHHHHHHHhcCCCCeEEEEEECCHH
Confidence 0000 000000 001111222222211 113566799999996655556677766665544455555544 433
Q ss_pred hhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000594 300 DVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALG 365 (1402)
Q Consensus 300 ~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 365 (1402)
.+....... ...+++.+++.++....+.+.+-..+-.. -.+.+..|++.++|.+..+....
T Consensus 161 kl~~tI~SR-c~~i~f~~ls~~el~~~L~~i~k~egi~i----d~~al~~La~~s~G~lr~al~~L 221 (486)
T PRK14953 161 KIPPTILSR-CQRFIFSKPTKEQIKEYLKRICNEEKIEY----EEKALDLLAQASEGGMRDAASLL 221 (486)
T ss_pred HHHHHHHHh-ceEEEcCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 333222211 23466999999998888887663322111 14566788899999776544433
No 114
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=97.98 E-value=0.00018 Score=90.77 Aligned_cols=191 Identities=13% Similarity=0.056 Sum_probs=109.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++||.+..++.|..++.... -.+.+.++|..|+||||+|+.+.+.... ..... ..+..-...+.|.
T Consensus 15 ~eiiGqe~v~~~L~~~i~~~r-----i~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~-------~pCg~C~sC~~~~ 82 (824)
T PRK07764 15 AEVIGQEHVTEPLSTALDSGR-----INHAYLFSGPRGCGKTSSARILARSLNCVEGPTS-------TPCGECDSCVALA 82 (824)
T ss_pred HHhcCcHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHhCcccCCCC-------CCCcccHHHHHHH
Confidence 468999999999999987532 2346789999999999999999876421 11100 0001111111111
Q ss_pred HH---------hcC-CCCCcCchHHHHHHHH-HHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hh
Q 000594 233 ES---------ITL-SPCDLKDLNSVQLKLK-EAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MD 300 (1402)
Q Consensus 233 ~~---------~~~-~~~~~~~~~~~~~~l~-~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~ 300 (1402)
.. +.. .....+++.++.+.+. .-..+++-++|||++..-....++.++..+..-...+.+|++|.+ ..
T Consensus 83 ~g~~~~~dv~eidaas~~~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~lt~~a~NaLLK~LEEpP~~~~fIl~tt~~~k 162 (824)
T PRK07764 83 PGGPGSLDVTEIDAASHGGVDDARELRERAFFAPAESRYKIFIIDEAHMVTPQGFNALLKIVEEPPEHLKFIFATTEPDK 162 (824)
T ss_pred cCCCCCCcEEEecccccCCHHHHHHHHHHHHhchhcCCceEEEEechhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhh
Confidence 11 000 0001111222222111 112355668899999776667788888877665566666655543 34
Q ss_pred hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 301 v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
+...+.. ..+.|+++.++.++..+.+.+.+-..+... -.+....|++.++|.+..+
T Consensus 163 Ll~TIrS-Rc~~v~F~~l~~~~l~~~L~~il~~EGv~i----d~eal~lLa~~sgGdlR~A 218 (824)
T PRK07764 163 VIGTIRS-RTHHYPFRLVPPEVMRGYLERICAQEGVPV----EPGVLPLVIRAGGGSVRDS 218 (824)
T ss_pred hhHHHHh-heeEEEeeCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 4433322 235567999999998888876552222111 1445678899999988443
No 115
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.97 E-value=0.00022 Score=87.07 Aligned_cols=196 Identities=13% Similarity=0.103 Sum_probs=108.3
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEE-eCCCCCHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVC-VSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~-~~~~~~~~~~~~~i 231 (1402)
.+++|.+..+..+.+++..+. -...+.++|+.|+||||+|+.+++.... ...+.-.|.. +......-...+.+
T Consensus 16 ~eivGQe~i~~~L~~~i~~~r-----i~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~Cg~C~sC~~~ 90 (620)
T PRK14954 16 ADITAQEHITHTIQNSLRMDR-----VGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEPCGECESCRDF 90 (620)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCCCccCHHHHHH
Confidence 468999999999988886532 2346889999999999999998875422 1111111111 00111111222222
Q ss_pred HHHhcCC-----CCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEc-cchhh
Q 000594 232 LESITLS-----PCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTT-RSMDV 301 (1402)
Q Consensus 232 ~~~~~~~-----~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTt-R~~~v 301 (1402)
...-... .......+++...+... ..+++-++|+|++..-.....+.+...+..-...+.+|++| +...+
T Consensus 91 ~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt~~a~naLLK~LEePp~~tv~IL~t~~~~kL 170 (620)
T PRK14954 91 DAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLSTAAFNAFLKTLEEPPPHAIFIFATTELHKI 170 (620)
T ss_pred hccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcCHHHHHHHHHHHhCCCCCeEEEEEeCChhhh
Confidence 1111100 00111123332222111 23455678999996655556777777765544455555444 44444
Q ss_pred hhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH
Q 000594 302 ASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL 359 (1402)
Q Consensus 302 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 359 (1402)
...+.. ....+++++++.++....+.+.+-..+... -.+.++.|++.++|..-
T Consensus 171 l~TI~S-Rc~~vef~~l~~~ei~~~L~~i~~~egi~I----~~eal~~La~~s~Gdlr 223 (620)
T PRK14954 171 PATIAS-RCQRFNFKRIPLDEIQSQLQMICRAEGIQI----DADALQLIARKAQGSMR 223 (620)
T ss_pred hHHHHh-hceEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHhCCCHH
Confidence 333221 234566999999998888776653222111 15677889999999654
No 116
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=97.95 E-value=7.8e-05 Score=78.76 Aligned_cols=184 Identities=16% Similarity=0.140 Sum_probs=113.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccccCceeE-EEeCCCCCHHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAW-VCVSHDFDVLRISKA 230 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f~~~~w-v~~~~~~~~~~~~~~ 230 (1402)
-.+++|.+..+..+.+.+.. ....+...+|++|.|||+-|++++... -.+-|.+++- .++|..-... +.+
T Consensus 35 ~de~~gQe~vV~~L~~a~~~------~~lp~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSderGis-vvr- 106 (346)
T KOG0989|consen 35 FDELAGQEHVVQVLKNALLR------RILPHYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDERGIS-VVR- 106 (346)
T ss_pred HHhhcchHHHHHHHHHHHhh------cCCceEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccccccc-chh-
Confidence 35688999999999998876 234578899999999999999988765 3456766652 3444332211 000
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHh--cCCe-EEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcC
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAV--FKKK-FLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMG 306 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l--~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~ 306 (1402)
....+...+........ ..++ -.+|||++..-..+.|..+...+-.....++.|+.+.. ..+.....
T Consensus 107 ---------~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsmtsdaq~aLrr~mE~~s~~trFiLIcnylsrii~pi~ 177 (346)
T KOG0989|consen 107 ---------EKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSMTSDAQAALRRTMEDFSRTTRFILICNYLSRIIRPLV 177 (346)
T ss_pred ---------hhhcCHHHHhhccccccCCCCCcceEEEEechhhhhHHHHHHHHHHHhccccceEEEEEcCChhhCChHHH
Confidence 01111111111110000 0233 47899999887789999999888876677775544433 32222221
Q ss_pred CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 000594 307 SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP 358 (1402)
Q Consensus 307 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 358 (1402)
. ....+..++|.+++..+-+...+-.++-..+ .+..+.|++.++|-=
T Consensus 178 S-RC~KfrFk~L~d~~iv~rL~~Ia~~E~v~~d----~~al~~I~~~S~GdL 224 (346)
T KOG0989|consen 178 S-RCQKFRFKKLKDEDIVDRLEKIASKEGVDID----DDALKLIAKISDGDL 224 (346)
T ss_pred h-hHHHhcCCCcchHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCcH
Confidence 1 1223448999999999988888754443322 556778899988843
No 117
>PRK05642 DNA replication initiation factor; Validated
Probab=97.94 E-value=0.00019 Score=77.72 Aligned_cols=155 Identities=18% Similarity=0.183 Sum_probs=89.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.|+|..|+|||.||+++++..... -..++|++..+ +... .. .+.+.+++-.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~-~~~v~y~~~~~------~~~~--------------~~----~~~~~~~~~d- 99 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQR-GEPAVYLPLAE------LLDR--------------GP----ELLDNLEQYE- 99 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhC-CCcEEEeeHHH------HHhh--------------hH----HHHHhhhhCC-
Confidence 568899999999999999998753222 23455666432 1110 01 2222233222
Q ss_pred EEEEeCCCcC-ChhhHHH-hhcccCC-CCCCcEEEEEccchhhh---------hhcCCCcceeecccCCChhhHHHHHHH
Q 000594 262 LIVLDDVWSE-RYDLWQA-LKSPFMA-GAPGSRIIVTTRSMDVA---------STMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 262 LlVlDdv~~~-~~~~~~~-~~~~l~~-~~~gs~iivTtR~~~v~---------~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
+||+||+... ....|+. +...+.. ...|..||+|++...-. ..+... ..+++++++.++-.+.+.+
T Consensus 100 ~LiiDDi~~~~~~~~~~~~Lf~l~n~~~~~g~~ilits~~~p~~l~~~~~~L~SRl~~g--l~~~l~~~~~e~~~~il~~ 177 (234)
T PRK05642 100 LVCLDDLDVIAGKADWEEALFHLFNRLRDSGRRLLLAASKSPRELPIKLPDLKSRLTLA--LVFQMRGLSDEDKLRALQL 177 (234)
T ss_pred EEEEechhhhcCChHHHHHHHHHHHHHHhcCCEEEEeCCCCHHHcCccCccHHHHHhcC--eeeecCCCCHHHHHHHHHH
Confidence 6789999532 1234543 3222221 12467899988753321 111112 3355999999999999987
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhh
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLL 368 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l 368 (1402)
++...+- .. -+++..-|++++.|..-++..+-..|
T Consensus 178 ka~~~~~-~l---~~ev~~~L~~~~~~d~r~l~~~l~~l 212 (234)
T PRK05642 178 RASRRGL-HL---TDEVGHFILTRGTRSMSALFDLLERL 212 (234)
T ss_pred HHHHcCC-CC---CHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 7643321 11 15777888899888776655444433
No 118
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=97.93 E-value=3.2e-05 Score=86.97 Aligned_cols=87 Identities=22% Similarity=0.194 Sum_probs=62.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC--CCHHHHHHHHHHHhcCCCCCcCch------HHHHHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD--FDVLRISKAILESITLSPCDLKDL------NSVQLKLK 253 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~------~~~~~~l~ 253 (1402)
..++|+|++|.|||||++.+++.....+|+..+||.+.+. .++.++++.+...+-....+.... ....+...
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~~nhfdv~v~VlLIgER~~EVtDLqrsIlg~Vvast~d~p~~~~~~va~~v~e~Ae 248 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAITRNHPEVELIVLLIDERPEEVTDMQRSVKGEVVASTFDEPASRHVQVAEMVIEKAK 248 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhcccCCceEEEEEEcCCCCccHHHHHHHhhceEEEecCCCChHHHHHHHHHHHHHHH
Confidence 5799999999999999999998765558999999999866 789999999965554433222111 11111222
Q ss_pred H-HhcCCeEEEEEeCC
Q 000594 254 E-AVFKKKFLIVLDDV 268 (1402)
Q Consensus 254 ~-~l~~k~~LlVlDdv 268 (1402)
. .-.+++++|++|++
T Consensus 249 ~~~~~GkdVVLlIDEi 264 (415)
T TIGR00767 249 RLVEHKKDVVILLDSI 264 (415)
T ss_pred HHHHcCCCeEEEEECh
Confidence 2 23589999999999
No 119
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=97.91 E-value=0.00032 Score=75.91 Aligned_cols=194 Identities=14% Similarity=0.089 Sum_probs=112.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccc----cCceeEEEeCCCCCHHHHHHHHHHHhc
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEA----FEPKAWVCVSHDFDVLRISKAILESIT 236 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~~ 236 (1402)
.++++.+++..+.. ....-+.|||.+|.|||++++++.... .... --.++.|.+...++..++...|+.+++
T Consensus 45 ~L~~L~~Ll~~P~~---~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lg 121 (302)
T PF05621_consen 45 ALDRLEELLEYPKR---HRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALG 121 (302)
T ss_pred HHHHHHHHHhCCcc---cCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhC
Confidence 44555555544322 455679999999999999999987643 1111 114566777888999999999999999
Q ss_pred CCCCCcCchHHHHHHHHHHhcC-CeEEEEEeCCCcC---C---hhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCCC-
Q 000594 237 LSPCDLKDLNSVQLKLKEAVFK-KKFLIVLDDVWSE---R---YDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGSG- 308 (1402)
Q Consensus 237 ~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~---~---~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~~- 308 (1402)
.+.................++. +-=+||+|.+.+- . ....-.....+-..-.-+-|.|-|++.--+-.....
T Consensus 122 aP~~~~~~~~~~~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~~Ln~LK~L~NeL~ipiV~vGt~~A~~al~~D~QL 201 (302)
T PF05621_consen 122 APYRPRDRVAKLEQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQREFLNALKFLGNELQIPIVGVGTREAYRALRTDPQL 201 (302)
T ss_pred cccCCCCCHHHHHHHHHHHHHHcCCcEEEeechHHHhcccHHHHHHHHHHHHHHhhccCCCeEEeccHHHHHHhccCHHH
Confidence 8876555555555555555543 4448899999652 1 111112233333333445677777653322111110
Q ss_pred --cceeecccCCChhh-HHHHHHHhh--cCCCCCCCCchHHHHHHHHHHHcCCChH
Q 000594 309 --KNYELELKLLSDDD-RWSVFVNHA--FEGRDAGTHGNFESARQRVVEKCKGLPL 359 (1402)
Q Consensus 309 --~~~~~~l~~L~~~~-~~~lf~~~a--~~~~~~~~~~~~~~~~~~i~~~~~g~PL 359 (1402)
....+.++....++ ...|+.... +.-..+. .-...++++.|...++|+.=
T Consensus 202 a~RF~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~S-~l~~~~la~~i~~~s~G~iG 256 (302)
T PF05621_consen 202 ASRFEPFELPRWELDEEFRRLLASFERALPLRKPS-NLASPELARRIHERSEGLIG 256 (302)
T ss_pred HhccCCccCCCCCCCcHHHHHHHHHHHhCCCCCCC-CCCCHHHHHHHHHHcCCchH
Confidence 01112355554444 444543322 1222222 22347899999999999863
No 120
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.90 E-value=0.00036 Score=85.85 Aligned_cols=197 Identities=14% Similarity=0.130 Sum_probs=110.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..+..+..++.... -...+.++|..|+||||+|+.+++.......+... ..........+.+..
T Consensus 16 ~~liGq~~i~~~L~~~l~~~r-----l~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~----~~~Cg~C~~C~~i~~ 86 (620)
T PRK14948 16 DELVGQEAIATTLKNALISNR-----IAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPT----PEPCGKCELCRAIAA 86 (620)
T ss_pred hhccChHHHHHHHHHHHHcCC-----CCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCC----CCCCcccHHHHHHhc
Confidence 468899999999999887532 22467899999999999999998764222211100 011111223333322
Q ss_pred HhcC-----CCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhh
Q 000594 234 SITL-----SPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAS 303 (1402)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 303 (1402)
.... ........+++.+.+... ..+++-++|+|++..-..+.++.+...+-.-.....+|++|.+ ..+..
T Consensus 87 g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~Lt~~a~naLLK~LEePp~~tvfIL~t~~~~~llp 166 (620)
T PRK14948 87 GNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHMLSTAAFNALLKTLEEPPPRVVFVLATTDPQRVLP 166 (620)
T ss_pred CCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECccccCHHHHHHHHHHHhcCCcCeEEEEEeCChhhhhH
Confidence 2111 000111122222222111 1245668999999665556777777777654445555544443 33333
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.+.. ....+++..++.++....+.+.+-..+.... .+.+..|++.++|.+..+..+
T Consensus 167 TIrS-Rc~~~~f~~l~~~ei~~~L~~ia~kegi~is----~~al~~La~~s~G~lr~A~~l 222 (620)
T PRK14948 167 TIIS-RCQRFDFRRIPLEAMVQHLSEIAEKESIEIE----PEALTLVAQRSQGGLRDAESL 222 (620)
T ss_pred HHHh-heeEEEecCCCHHHHHHHHHHHHHHhCCCCC----HHHHHHHHHHcCCCHHHHHHH
Confidence 2221 2344568889999888877766533221111 356788999999988655433
No 121
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=97.90 E-value=0.00035 Score=74.65 Aligned_cols=184 Identities=17% Similarity=0.210 Sum_probs=99.9
Q ss_pred CccccchH-HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCHHHHHHHH
Q 000594 154 PAVYGRDE-DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~-~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i 231 (1402)
.-++|-.. ..-.....+..... .....+.|+|..|+|||.|.+++++...+.+-+. +++++ ..++...+
T Consensus 9 nfv~g~~N~~a~~~~~~ia~~~~---~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~------~~~f~~~~ 79 (219)
T PF00308_consen 9 NFVVGESNELAYAAAKAIAENPG---ERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLS------AEEFIREF 79 (219)
T ss_dssp CS--TTTTHHHHHHHHHHHHSTT---TSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEE------HHHHHHHH
T ss_pred cCCcCCcHHHHHHHHHHHHhcCC---CCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeec------HHHHHHHH
Confidence 33456533 33344444544322 2234578999999999999999998643333332 34544 34566666
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC-hhhHHH----hhcccCCCCCCcEEEEEccchh------
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER-YDLWQA----LKSPFMAGAPGSRIIVTTRSMD------ 300 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~----~~~~l~~~~~gs~iivTtR~~~------ 300 (1402)
...+.. ...+ .+++.++ .-=+|++||+..-. ...|.. +...+. ..|.+||+|++...
T Consensus 80 ~~~~~~-----~~~~----~~~~~~~-~~DlL~iDDi~~l~~~~~~q~~lf~l~n~~~--~~~k~li~ts~~~P~~l~~~ 147 (219)
T PF00308_consen 80 ADALRD-----GEIE----EFKDRLR-SADLLIIDDIQFLAGKQRTQEELFHLFNRLI--ESGKQLILTSDRPPSELSGL 147 (219)
T ss_dssp HHHHHT-----TSHH----HHHHHHC-TSSEEEEETGGGGTTHHHHHHHHHHHHHHHH--HTTSEEEEEESS-TTTTTTS
T ss_pred HHHHHc-----ccch----hhhhhhh-cCCEEEEecchhhcCchHHHHHHHHHHHHHH--hhCCeEEEEeCCCCcccccc
Confidence 665543 1222 2334444 34478999995522 123433 222222 34678999996432
Q ss_pred ---hhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 301 ---VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 301 ---v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
....+..+ ..+++++.+.++-.+++.+++-..+-. --+++++-|++.+.+..-.+..+
T Consensus 148 ~~~L~SRl~~G--l~~~l~~pd~~~r~~il~~~a~~~~~~----l~~~v~~~l~~~~~~~~r~L~~~ 208 (219)
T PF00308_consen 148 LPDLRSRLSWG--LVVELQPPDDEDRRRILQKKAKERGIE----LPEEVIEYLARRFRRDVRELEGA 208 (219)
T ss_dssp -HHHHHHHHCS--EEEEE----HHHHHHHHHHHHHHTT------S-HHHHHHHHHHTTSSHHHHHHH
T ss_pred ChhhhhhHhhc--chhhcCCCCHHHHHHHHHHHHHHhCCC----CcHHHHHHHHHhhcCCHHHHHHH
Confidence 22233333 335599999999999999888533221 12667777888877666555443
No 122
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=97.90 E-value=0.00034 Score=83.13 Aligned_cols=185 Identities=14% Similarity=0.114 Sum_probs=105.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-----Cce--------------e
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPK--------------A 214 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-----~~~--------------~ 214 (1402)
.+++|.+..+..+.+++.... -...+.++|+.|+||||+|+.+++....... .|. -
T Consensus 17 ~diiGq~~~v~~L~~~i~~~~-----i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~~i~~~~~~d 91 (451)
T PRK06305 17 SEILGQDAVVAVLKNALRFNR-----AAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCKEISSGTSLD 91 (451)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHHHHhcCCCCc
Confidence 468999999999999886532 2356889999999999999998865322110 000 0
Q ss_pred EEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEE
Q 000594 215 WVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRII 293 (1402)
Q Consensus 215 wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ii 293 (1402)
|+.+.... ....+++.++.+.+.. ...+++-++|+|++..-..+..+.+...+.....+..+|
T Consensus 92 ~~~i~g~~----------------~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt~~~~n~LLk~lEep~~~~~~I 155 (451)
T PRK06305 92 VLEIDGAS----------------HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLTKEAFNSLLKTLEEPPQHVKFF 155 (451)
T ss_pred eEEeeccc----------------cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhCHHHHHHHHHHhhcCCCCceEE
Confidence 11111000 0001111222221111 123566789999985544445566666665544566666
Q ss_pred EEccc-hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH-HHHHH
Q 000594 294 VTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL-AARAL 364 (1402)
Q Consensus 294 vTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL-ai~~~ 364 (1402)
++|.. ..+...+.. ....++++++++++..+.+.+.+-..+... -.+.++.|++.++|.+- |+..+
T Consensus 156 l~t~~~~kl~~tI~s-Rc~~v~f~~l~~~el~~~L~~~~~~eg~~i----~~~al~~L~~~s~gdlr~a~~~L 223 (451)
T PRK06305 156 LATTEIHKIPGTILS-RCQKMHLKRIPEETIIDKLALIAKQEGIET----SREALLPIARAAQGSLRDAESLY 223 (451)
T ss_pred EEeCChHhcchHHHH-hceEEeCCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHHHH
Confidence 66543 333222211 224466999999999888877653222111 25677889999999764 44443
No 123
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=97.90 E-value=0.00055 Score=74.74 Aligned_cols=169 Identities=17% Similarity=0.209 Sum_probs=107.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
++.|.+|+.++..+..++...+. .-+..|-|.|.+|.|||.+.+++.+.. . -..+|+++-+.++.+-++..|+
T Consensus 5 ~~~v~~Re~qi~~L~~Llg~~~~---~~PS~~~iyG~sgTGKT~~~r~~l~~~-n---~~~vw~n~~ecft~~~lle~IL 77 (438)
T KOG2543|consen 5 EPNVPCRESQIRRLKSLLGNNSC---TIPSIVHIYGHSGTGKTYLVRQLLRKL-N---LENVWLNCVECFTYAILLEKIL 77 (438)
T ss_pred ccCccchHHHHHHHHHHhCCCCc---ccceeEEEeccCCCchhHHHHHHHhhc-C---CcceeeehHHhccHHHHHHHHH
Confidence 56788999999999998876542 345677999999999999999998753 1 1357999999999999999999
Q ss_pred HHhcCCCCCc-------CchHHHHHHHHH--Hhc--CCeEEEEEeCCCcCChhhHHH-----hhcccCCCCCCcEEEEEc
Q 000594 233 ESITLSPCDL-------KDLNSVQLKLKE--AVF--KKKFLIVLDDVWSERYDLWQA-----LKSPFMAGAPGSRIIVTT 296 (1402)
Q Consensus 233 ~~~~~~~~~~-------~~~~~~~~~l~~--~l~--~k~~LlVlDdv~~~~~~~~~~-----~~~~l~~~~~gs~iivTt 296 (1402)
.+++....+. .+.......+.+ ... ++.++||||++.. ..+.+. +.....-.....-+|+++
T Consensus 78 ~~~~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~--lrD~~a~ll~~l~~L~el~~~~~i~iils 155 (438)
T KOG2543|consen 78 NKSQLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADA--LRDMDAILLQCLFRLYELLNEPTIVIILS 155 (438)
T ss_pred HHhccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHh--hhccchHHHHHHHHHHHHhCCCceEEEEe
Confidence 9986322211 112222223333 222 5689999999933 122211 111111111223344444
Q ss_pred cchhhhh---hcCCCcceeecccCCChhhHHHHHHHh
Q 000594 297 RSMDVAS---TMGSGKNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 297 R~~~v~~---~~~~~~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
-..--.. .++...+..+..+..+.++..+++.+.
T Consensus 156 ~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 156 APSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred ccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 3322222 245555666668899999999888543
No 124
>PF14516 AAA_35: AAA-like domain
Probab=97.88 E-value=0.0021 Score=73.65 Aligned_cols=204 Identities=12% Similarity=0.134 Sum_probs=116.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-----CCHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-----FDVLR 226 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-----~~~~~ 226 (1402)
+.+..|.|...-+++.+.+... ...+.|.|+-.+|||+|...+.+...+..+. ++++++... .+..+
T Consensus 9 ~~~~Yi~R~~~e~~~~~~i~~~-------G~~~~I~apRq~GKTSll~~l~~~l~~~~~~-~v~id~~~~~~~~~~~~~~ 80 (331)
T PF14516_consen 9 DSPFYIERPPAEQECYQEIVQP-------GSYIRIKAPRQMGKTSLLLRLLERLQQQGYR-CVYIDLQQLGSAIFSDLEQ 80 (331)
T ss_pred CCCcccCchHHHHHHHHHHhcC-------CCEEEEECcccCCHHHHHHHHHHHHHHCCCE-EEEEEeecCCCcccCCHHH
Confidence 3455678986777777777542 2489999999999999999998765444443 446766542 24555
Q ss_pred HHHHHHH----HhcCCCC-------CcCchHHHHHHHHHHh---cCCeEEEEEeCCCcCC------hhhHHHhhcccCCC
Q 000594 227 ISKAILE----SITLSPC-------DLKDLNSVQLKLKEAV---FKKKFLIVLDDVWSER------YDLWQALKSPFMAG 286 (1402)
Q Consensus 227 ~~~~i~~----~~~~~~~-------~~~~~~~~~~~l~~~l---~~k~~LlVlDdv~~~~------~~~~~~~~~~l~~~ 286 (1402)
.++.++. ++..... ...........+.+++ .+++.+|++|+|..-- .+.+..++......
T Consensus 81 f~~~~~~~i~~~L~l~~~l~~~w~~~~~~~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~~~~dF~~~LR~~~~~~ 160 (331)
T PF14516_consen 81 FLRWFCEEISRQLKLDEKLDEYWDEEIGSKISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQIADDFFGLLRSWYEQR 160 (331)
T ss_pred HHHHHHHHHHHHcCCChhHHHHHHHhcCChhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcchHHHHHHHHHHHHHhc
Confidence 5555544 4443321 0111112222333332 2689999999994311 01222222221111
Q ss_pred C----CCcEEEEEccchhh--hhhcCCC---cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 287 A----PGSRIIVTTRSMDV--ASTMGSG---KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 287 ~----~gs~iivTtR~~~v--~~~~~~~---~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
. ...-.+|...+.+. ....... -...++|++++.+|...|..++-.. .. ....++|...++|+
T Consensus 161 ~~~~~~~~L~li~~~~t~~~~~~~~~~SPFNIg~~i~L~~Ft~~ev~~L~~~~~~~----~~----~~~~~~l~~~tgGh 232 (331)
T PF14516_consen 161 KNNPIWQKLRLILAGSTEDYIILDINQSPFNIGQPIELPDFTPEEVQELAQRYGLE----FS----QEQLEQLMDWTGGH 232 (331)
T ss_pred ccCcccceEEEEEecCcccccccCCCCCCcccccceeCCCCCHHHHHHHHHhhhcc----CC----HHHHHHHHHHHCCC
Confidence 1 11222222222111 1111100 1234669999999999999876421 11 22388999999999
Q ss_pred hHHHHHHHhhhcCC
Q 000594 358 PLAARALGGLLRSK 371 (1402)
Q Consensus 358 PLai~~~~~~l~~~ 371 (1402)
|.-+..++..+...
T Consensus 233 P~Lv~~~~~~l~~~ 246 (331)
T PF14516_consen 233 PYLVQKACYLLVEE 246 (331)
T ss_pred HHHHHHHHHHHHHc
Confidence 99999999999664
No 125
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.87 E-value=9.9e-06 Score=60.55 Aligned_cols=33 Identities=45% Similarity=0.515 Sum_probs=18.3
Q ss_pred cccceeccCccccccchhhhcCCCCcEEecCCc
Q 000594 594 HLRYLNFSNSWIQCLPEVITSLFNLEILILSNC 626 (1402)
Q Consensus 594 ~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~ 626 (1402)
+|++|++++|.|+.+|..+++|++|++|++++|
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N 34 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNN 34 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSS
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCC
Confidence 455555666655555555556666666666655
No 126
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=97.87 E-value=0.0003 Score=78.81 Aligned_cols=225 Identities=16% Similarity=0.099 Sum_probs=127.0
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-CceeEEEeCCCCCHHHHHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.+..++||+.|++.+.+|+...-.. ...+.+.|.|.+|.|||.+...|+.+.....- ..++++....-....+++..
T Consensus 148 ~p~~l~gRe~e~~~v~~F~~~hle~--~t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~k 225 (529)
T KOG2227|consen 148 PPGTLKGRELEMDIVREFFSLHLEL--NTSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFKK 225 (529)
T ss_pred CCCCccchHHHHHHHHHHHHhhhhc--ccCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHHH
Confidence 3567899999999999998754322 34457899999999999999999987522221 23456666555667788888
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHhcC--CeEEEEEeCCCcCChhhHHHhhcccC-CCCCCcEEEEEccch--h----h
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAVFK--KKFLIVLDDVWSERYDLWQALKSPFM-AGAPGSRIIVTTRSM--D----V 301 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~LlVlDdv~~~~~~~~~~~~~~l~-~~~~gs~iivTtR~~--~----v 301 (1402)
|...+...........+.+..+.++..+ +.+|+|+|.+..-....-+.+...|. +.-+++|+|+.--.. + .
T Consensus 226 I~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~~~vLy~lFewp~lp~sr~iLiGiANslDlTdR~ 305 (529)
T KOG2227|consen 226 IFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRSQTVLYTLFEWPKLPNSRIILIGIANSLDLTDRF 305 (529)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcccceeeeehhcccCCcceeeeeeehhhhhHHHHH
Confidence 8877722211111123444555555543 36899999983210000111222222 223567766542111 1 1
Q ss_pred hhhcC---CCcceeecccCCChhhHHHHHHHhhcCCCCCCC-CchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHH
Q 000594 302 ASTMG---SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGT-HGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEW 377 (1402)
Q Consensus 302 ~~~~~---~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~-~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w 377 (1402)
..... .-.+..+..+|.+.++-.++|..+.-....... +..++-.|++++.-.|.+--|+.+.-+.+.-- ..+|
T Consensus 306 LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t~~~~~~Aie~~ArKvaa~SGDlRkaLdv~R~aiEI~--E~e~ 383 (529)
T KOG2227|consen 306 LPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEESTSIFLNAAIELCARKVAAPSGDLRKALDVCRRAIEIA--EIEK 383 (529)
T ss_pred hhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccccccchHHHHHHHHHhccCchhHHHHHHHHHHHHHHH--HHHH
Confidence 11111 123444558999999999999988743222111 12334444444444455666666655444221 2455
Q ss_pred HHH
Q 000594 378 RTI 380 (1402)
Q Consensus 378 ~~~ 380 (1402)
+.+
T Consensus 384 r~~ 386 (529)
T KOG2227|consen 384 RKI 386 (529)
T ss_pred hhc
Confidence 555
No 127
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=97.86 E-value=0.00023 Score=76.42 Aligned_cols=158 Identities=15% Similarity=0.128 Sum_probs=92.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
.....+.+||++|+||||||+.+.... +.+ ...||..|-...-..-.++|.++... ...+.+
T Consensus 160 ~~ipSmIlWGppG~GKTtlArlia~ts-k~~--SyrfvelSAt~a~t~dvR~ife~aq~---------------~~~l~k 221 (554)
T KOG2028|consen 160 NRIPSMILWGPPGTGKTTLARLIASTS-KKH--SYRFVELSATNAKTNDVRDIFEQAQN---------------EKSLTK 221 (554)
T ss_pred CCCCceEEecCCCCchHHHHHHHHhhc-CCC--ceEEEEEeccccchHHHHHHHHHHHH---------------HHhhhc
Confidence 445578899999999999999998753 221 14467766554433444445444321 123468
Q ss_pred CeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE--Eccchhhh---hhcCCCcceeecccCCChhhHHHHHHHhhc-
Q 000594 259 KKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV--TTRSMDVA---STMGSGKNYELELKLLSDDDRWSVFVNHAF- 332 (1402)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv--TtR~~~v~---~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~- 332 (1402)
+|.+|++|.|..-+..+-+ ..+|...+|.-++| ||.++..- ..+. ...++.+++|+.++...++.+-+-
T Consensus 222 rkTilFiDEiHRFNksQQD---~fLP~VE~G~I~lIGATTENPSFqln~aLlS--RC~VfvLekL~~n~v~~iL~raia~ 296 (554)
T KOG2028|consen 222 RKTILFIDEIHRFNKSQQD---TFLPHVENGDITLIGATTENPSFQLNAALLS--RCRVFVLEKLPVNAVVTILMRAIAS 296 (554)
T ss_pred ceeEEEeHHhhhhhhhhhh---cccceeccCceEEEecccCCCccchhHHHHh--ccceeEeccCCHHHHHHHHHHHHHh
Confidence 9999999999653322222 23555667887666 56654321 1111 122344999999999888877332
Q ss_pred -CC-CC---CCCCch---HHHHHHHHHHHcCCChH
Q 000594 333 -EG-RD---AGTHGN---FESARQRVVEKCKGLPL 359 (1402)
Q Consensus 333 -~~-~~---~~~~~~---~~~~~~~i~~~~~g~PL 359 (1402)
++ .. .-+.+. -..+.+-++..|+|-.-
T Consensus 297 l~dser~~~~l~n~s~~ve~siidyla~lsdGDaR 331 (554)
T KOG2028|consen 297 LGDSERPTDPLPNSSMFVEDSIIDYLAYLSDGDAR 331 (554)
T ss_pred hccccccCCCCCCcchhhhHHHHHHHHHhcCchHH
Confidence 11 11 111111 23455667777888653
No 128
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=97.83 E-value=0.00022 Score=83.32 Aligned_cols=182 Identities=16% Similarity=0.146 Sum_probs=98.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCC-------CCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPS-------DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVL 225 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~-------~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~ 225 (1402)
..++.|+++.+++|.+.+...-.. +...++-+.++|++|+|||++|+++++. ....| +.+.. .
T Consensus 121 ~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~-l~~~~-----~~v~~----~ 190 (364)
T TIGR01242 121 YEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHE-TNATF-----IRVVG----S 190 (364)
T ss_pred HHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-CCCCE-----Eecch----H
Confidence 356899999999998877421100 0123456889999999999999999975 33332 22221 1
Q ss_pred HHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-----------Chh---hHHHhhcccCC--CCCC
Q 000594 226 RISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-----------RYD---LWQALKSPFMA--GAPG 289 (1402)
Q Consensus 226 ~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~~~~~l~~--~~~g 289 (1402)
.+..... + .........+...-...+.+|++||++.- +.+ .+..+...+.. ...+
T Consensus 191 ~l~~~~~---g------~~~~~i~~~f~~a~~~~p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~ 261 (364)
T TIGR01242 191 ELVRKYI---G------EGARLVREIFELAKEKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGN 261 (364)
T ss_pred HHHHHhh---h------HHHHHHHHHHHHHHhcCCcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCC
Confidence 1111110 0 00111111222222356789999998531 111 12222222221 1346
Q ss_pred cEEEEEccchhhhh-hcCC--CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 000594 290 SRIIVTTRSMDVAS-TMGS--GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP 358 (1402)
Q Consensus 290 s~iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 358 (1402)
.+||.||...+... .+.. .-...++++..+.++..++|..++....-.. ..+ ...+++.+.|..
T Consensus 262 v~vI~ttn~~~~ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l~~-~~~----~~~la~~t~g~s 328 (364)
T TIGR01242 262 VKVIAATNRPDILDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKLAE-DVD----LEAIAKMTEGAS 328 (364)
T ss_pred EEEEEecCChhhCChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCCCc-cCC----HHHHHHHcCCCC
Confidence 77888887543222 1111 1123466899999999999998874432111 112 356777777654
No 129
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=97.81 E-value=0.00065 Score=82.63 Aligned_cols=193 Identities=16% Similarity=0.136 Sum_probs=110.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc-ccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.+++|-+..+..+..++.... -.+.+.++|+.|+||||+|+.+++..... .... ..+... ...+.+.
T Consensus 16 ~diiGqe~iv~~L~~~i~~~~-----i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~---~pC~~C----~~C~~i~ 83 (563)
T PRK06647 16 NSLEGQDFVVETLKHSIESNK-----IANAYIFSGPRGVGKTSSARAFARCLNCVNGPTP---MPCGEC----SSCKSID 83 (563)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhccccCCCC---CCCccc----hHHHHHH
Confidence 468999999999999986532 23578899999999999999998754211 1100 000000 0111111
Q ss_pred HHhcC-----CCCCcCchHHHH---HHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhh
Q 000594 233 ESITL-----SPCDLKDLNSVQ---LKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVA 302 (1402)
Q Consensus 233 ~~~~~-----~~~~~~~~~~~~---~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~ 302 (1402)
..-.. ........+++. +.+.. -..+++-++|+|++..-....++.+...+..-...+.+|++|.. ..+.
T Consensus 84 ~~~~~dv~~idgas~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~Ls~~a~naLLK~LEepp~~~vfI~~tte~~kL~ 163 (563)
T PRK06647 84 NDNSLDVIEIDGASNTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHMLSNSAFNALLKTIEEPPPYIVFIFATTEVHKLP 163 (563)
T ss_pred cCCCCCeEEecCcccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhcCHHHHHHHHHhhccCCCCEEEEEecCChHHhH
Confidence 11000 000001122222 22111 12356668999999766656777787777654456666665543 3333
Q ss_pred hhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 303 STMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 303 ~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
..... ....+++++++.++..+.+.+.+...+... -.+.+..|++.++|.+-.+..
T Consensus 164 ~tI~S-Rc~~~~f~~l~~~el~~~L~~i~~~egi~i----d~eAl~lLa~~s~GdlR~als 219 (563)
T PRK06647 164 ATIKS-RCQHFNFRLLSLEKIYNMLKKVCLEDQIKY----EDEALKWIAYKSTGSVRDAYT 219 (563)
T ss_pred HHHHH-hceEEEecCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHHHH
Confidence 32221 123466999999999888887764332221 256677889999998754433
No 130
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.80 E-value=3.9e-06 Score=100.14 Aligned_cols=103 Identities=26% Similarity=0.286 Sum_probs=77.6
Q ss_pred hccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccccc
Q 000594 565 LLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHH 644 (1402)
Q Consensus 565 ~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~ 644 (1402)
.+..++.|..|++.+|.|..+...+..+.+|++|+|++|.|+.+ ..+..|..|+.|++++|. +..++. +..+++|+.
T Consensus 90 ~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i-~~l~~l~~L~~L~l~~N~-i~~~~~-~~~l~~L~~ 166 (414)
T KOG0531|consen 90 HLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKL-EGLSTLTLLKELNLSGNL-ISDISG-LESLKSLKL 166 (414)
T ss_pred ccccccceeeeeccccchhhcccchhhhhcchheeccccccccc-cchhhccchhhheeccCc-chhccC-Cccchhhhc
Confidence 36678888889999998888876688888999999999988888 457788888999998884 444443 666888888
Q ss_pred ccccCcccccccccC-cccccccccccc
Q 000594 645 LDIEGAYQLCELPLG-MKELKCLRTLTN 671 (1402)
Q Consensus 645 L~l~~~~~l~~lp~~-i~~L~~L~~L~~ 671 (1402)
+++++|. +..++.. ...+.+|+.+..
T Consensus 167 l~l~~n~-i~~ie~~~~~~~~~l~~l~l 193 (414)
T KOG0531|consen 167 LDLSYNR-IVDIENDELSELISLEELDL 193 (414)
T ss_pred ccCCcch-hhhhhhhhhhhccchHHHhc
Confidence 8888887 5555443 355666666543
No 131
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=97.76 E-value=5e-06 Score=99.21 Aligned_cols=102 Identities=27% Similarity=0.420 Sum_probs=82.9
Q ss_pred cCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhccccccccc
Q 000594 567 PKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLD 646 (1402)
Q Consensus 567 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~ 646 (1402)
..+..+..+++..|.+..+-..++.+++|.+|++.+|.|..+...+..+.+|++|++++|. +..+.. +..|+.|+.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~-I~~i~~-l~~l~~L~~L~ 146 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNK-ITKLEG-LSTLTLLKELN 146 (414)
T ss_pred HHhHhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheeccccc-cccccc-hhhccchhhhe
Confidence 3556777777899999887677899999999999999999997769999999999999994 555543 78888899999
Q ss_pred ccCcccccccccCcccccccccccce
Q 000594 647 IEGAYQLCELPLGMKELKCLRTLTNF 672 (1402)
Q Consensus 647 l~~~~~l~~lp~~i~~L~~L~~L~~~ 672 (1402)
+.+|. +..++ ++..+++|+.++..
T Consensus 147 l~~N~-i~~~~-~~~~l~~L~~l~l~ 170 (414)
T KOG0531|consen 147 LSGNL-ISDIS-GLESLKSLKLLDLS 170 (414)
T ss_pred eccCc-chhcc-CCccchhhhcccCC
Confidence 99997 66554 46667777777643
No 132
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=97.75 E-value=2.4e-05 Score=58.48 Aligned_cols=40 Identities=35% Similarity=0.452 Sum_probs=31.5
Q ss_pred CcccEEEecccccccccccccccccccceeccCccccccc
Q 000594 570 KKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLP 609 (1402)
Q Consensus 570 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp 609 (1402)
++|++|++++|.|+.+|..|++|++|++|++++|.|+.+|
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4688888888888888877888888888888888888765
No 133
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.74 E-value=0.00066 Score=83.47 Aligned_cols=196 Identities=15% Similarity=0.115 Sum_probs=107.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..+..+.+++.... -.+.+.++|+.|+||||+|+.+++.....+... ...++.....+.|..
T Consensus 16 ~~iiGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~------~~~c~~c~~c~~i~~ 84 (576)
T PRK14965 16 SDLTGQEHVSRTLQNAIDTGR-----VAHAFLFTGARGVGKTSTARILAKALNCEQGLT------AEPCNVCPPCVEITE 84 (576)
T ss_pred HHccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCC------CCCCCccHHHHHHhc
Confidence 468999999999999886532 235678999999999999999887532211100 000011111111111
Q ss_pred Hhc-------CC-CCCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE-Eccchhhhh
Q 000594 234 SIT-------LS-PCDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVAS 303 (1402)
Q Consensus 234 ~~~-------~~-~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~ 303 (1402)
.-. .. ....+++.++...+... ..+++-++|+|++..-+....+.+...+-.-...+.+|+ ||....+..
T Consensus 85 g~~~d~~eid~~s~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt~~a~naLLk~LEepp~~~~fIl~t~~~~kl~~ 164 (576)
T PRK14965 85 GRSVDVFEIDGASNTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLSTNAFNALLKTLEEPPPHVKFIFATTEPHKVPI 164 (576)
T ss_pred CCCCCeeeeeccCccCHHHHHHHHHHHHhccccCCceEEEEEChhhCCHHHHHHHHHHHHcCCCCeEEEEEeCChhhhhH
Confidence 000 00 00011222222222111 124555889999966555666777776654445566555 444444443
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP-LAARALG 365 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~ 365 (1402)
..... ...+++++++.++....+...+-..+... -.+....|++.++|.. .|+..+-
T Consensus 165 tI~SR-c~~~~f~~l~~~~i~~~L~~i~~~egi~i----~~~al~~la~~a~G~lr~al~~Ld 222 (576)
T PRK14965 165 TILSR-CQRFDFRRIPLQKIVDRLRYIADQEGISI----SDAALALVARKGDGSMRDSLSTLD 222 (576)
T ss_pred HHHHh-hhhhhcCCCCHHHHHHHHHHHHHHhCCCC----CHHHHHHHHHHcCCCHHHHHHHHH
Confidence 33221 23456889999998887776553222111 1456778899999866 4544443
No 134
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.74 E-value=1.2e-05 Score=86.14 Aligned_cols=88 Identities=22% Similarity=0.204 Sum_probs=63.5
Q ss_pred hhccCCCcccEEEecccccc-----cccccccccccccceeccCc----cccccchh-------hhcCCCCcEEecCCcc
Q 000594 564 DLLPKCKKLRVLSLGRYLIT-----EVPVSIGCLKHLRYLNFSNS----WIQCLPEV-------ITSLFNLEILILSNCW 627 (1402)
Q Consensus 564 ~~~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~~----~i~~lp~~-------i~~L~~L~~LdLs~~~ 627 (1402)
.....+..+..|+|++|.+. .+-+.+.+.++||.-++++- ...++|+. +-..++|++||||.|-
T Consensus 24 ~~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 24 EELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HHhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 34566788899999999875 34556777788999888853 23355654 3445689999999996
Q ss_pred ccccCchh----hhcccccccccccCcc
Q 000594 628 FLLKLPSS----IGNLVNLHHLDIEGAY 651 (1402)
Q Consensus 628 ~~~~lP~~----i~~L~~L~~L~l~~~~ 651 (1402)
+-..-+.. |..++.|+||+|.+|.
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 54444443 5677899999999887
No 135
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=97.73 E-value=0.0011 Score=80.95 Aligned_cols=192 Identities=16% Similarity=0.103 Sum_probs=107.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..++.+.+++.... -.+.+.++|+.|+||||+|+.+.+.....+-.. ....+.....+.+..
T Consensus 16 ~~viGq~~v~~~L~~~i~~~~-----~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~------~~pC~~C~~C~~i~~ 84 (559)
T PRK05563 16 EDVVGQEHITKTLKNAIKQGK-----ISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPD------GEPCNECEICKAITN 84 (559)
T ss_pred HhccCcHHHHHHHHHHHHcCC-----CCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCC------CCCCCccHHHHHHhc
Confidence 468999999999999987542 235777899999999999999876432111000 001111112222211
Q ss_pred HhcCC-----CCCcCchH---HHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE-Eccchhhhh
Q 000594 234 SITLS-----PCDLKDLN---SVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVAS 303 (1402)
Q Consensus 234 ~~~~~-----~~~~~~~~---~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~ 303 (1402)
..... .......+ ++...+.. -..+++-++|+|++..-....+..+...+..-.....+|+ ||....+..
T Consensus 85 g~~~dv~eidaas~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt~~a~naLLKtLEepp~~~ifIlatt~~~ki~~ 164 (559)
T PRK05563 85 GSLMDVIEIDAASNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLSTGAFNALLKTLEEPPAHVIFILATTEPHKIPA 164 (559)
T ss_pred CCCCCeEEeeccccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCCHHHHHHHHHHhcCCCCCeEEEEEeCChhhCcH
Confidence 11000 00001122 22222211 1235667889999966555677777776654444555554 444444333
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.+.. ....+++.+++.++..+.+...+-..+-.. -.+.+..|++.++|.+..+
T Consensus 165 tI~S-Rc~~~~f~~~~~~ei~~~L~~i~~~egi~i----~~~al~~ia~~s~G~~R~a 217 (559)
T PRK05563 165 TILS-RCQRFDFKRISVEDIVERLKYILDKEGIEY----EDEALRLIARAAEGGMRDA 217 (559)
T ss_pred HHHh-HheEEecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 2221 234466889999998888877663322111 1456778888998877544
No 136
>PRK06620 hypothetical protein; Validated
Probab=97.73 E-value=0.00087 Score=71.17 Aligned_cols=136 Identities=12% Similarity=-0.016 Sum_probs=77.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+.+.|+|++|+|||+||+.+++.. .. .++. ..+.. + +.. +..-
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~-~~-----~~~~--~~~~~---------------------~-------~~~-~~~d 87 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS-NA-----YIIK--DIFFN---------------------E-------EIL-EKYN 87 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc-CC-----EEcc--hhhhc---------------------h-------hHH-hcCC
Confidence 568999999999999999987642 11 1111 00000 0 011 1234
Q ss_pred EEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhh-------hhhcCCCcceeecccCCChhhHHHHHHHhhcCC
Q 000594 262 LIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV-------ASTMGSGKNYELELKLLSDDDRWSVFVNHAFEG 334 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v-------~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 334 (1402)
++++||+..-+....-.+...+. ..|..||+|++.... ...+... ..++++++++++-.+++.+.+...
T Consensus 88 ~lliDdi~~~~~~~lf~l~N~~~--e~g~~ilits~~~p~~l~l~~L~SRl~~g--l~~~l~~pd~~~~~~~l~k~~~~~ 163 (214)
T PRK06620 88 AFIIEDIENWQEPALLHIFNIIN--EKQKYLLLTSSDKSRNFTLPDLSSRIKSV--LSILLNSPDDELIKILIFKHFSIS 163 (214)
T ss_pred EEEEeccccchHHHHHHHHHHHH--hcCCEEEEEcCCCccccchHHHHHHHhCC--ceEeeCCCCHHHHHHHHHHHHHHc
Confidence 78899994321111112222222 356789999875332 2222222 235599999999888888776422
Q ss_pred CCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 335 RDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 335 ~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
+ .. --+++.+-|++.+.|.--.+.
T Consensus 164 ~-l~---l~~ev~~~L~~~~~~d~r~l~ 187 (214)
T PRK06620 164 S-VT---ISRQIIDFLLVNLPREYSKII 187 (214)
T ss_pred C-CC---CCHHHHHHHHHHccCCHHHHH
Confidence 1 11 126677788888877655443
No 137
>CHL00181 cbbX CbbX; Provisional
Probab=97.72 E-value=0.0011 Score=73.74 Aligned_cols=135 Identities=11% Similarity=0.047 Sum_probs=73.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCe
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKK 260 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 260 (1402)
..+.++|++|+||||+|+.+++.... +.-....|+.++. .+ +........ .......+.+. ..
T Consensus 60 ~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~----~~----l~~~~~g~~-----~~~~~~~l~~a---~g 123 (287)
T CHL00181 60 LHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTR----DD----LVGQYIGHT-----APKTKEVLKKA---MG 123 (287)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecH----HH----HHHHHhccc-----hHHHHHHHHHc---cC
Confidence 35789999999999999999764321 1112223555552 12 222221110 11112223322 22
Q ss_pred EEEEEeCCCcC---------ChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcC------CCcceeecccCCChhhHHH
Q 000594 261 FLIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMG------SGKNYELELKLLSDDDRWS 325 (1402)
Q Consensus 261 ~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~------~~~~~~~~l~~L~~~~~~~ 325 (1402)
-+|++|++..- ..+..+.+...+.....+.+||+++....+..... ..-...+++++++.++..+
T Consensus 124 gVLfIDE~~~l~~~~~~~~~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~~~~~~np~L~sR~~~~i~F~~~t~~el~~ 203 (287)
T CHL00181 124 GVLFIDEAYYLYKPDNERDYGSEAIEILLQVMENQRDDLVVIFAGYKDRMDKFYESNPGLSSRIANHVDFPDYTPEELLQ 203 (287)
T ss_pred CEEEEEccchhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhcCHHHHHhCCceEEcCCcCHHHHHH
Confidence 49999999531 11223334444444445567777776544432211 1123456699999999999
Q ss_pred HHHHhhc
Q 000594 326 VFVNHAF 332 (1402)
Q Consensus 326 lf~~~a~ 332 (1402)
++.+.+-
T Consensus 204 I~~~~l~ 210 (287)
T CHL00181 204 IAKIMLE 210 (287)
T ss_pred HHHHHHH
Confidence 9887764
No 138
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.71 E-value=0.00097 Score=82.18 Aligned_cols=193 Identities=14% Similarity=0.103 Sum_probs=108.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.+..++.+..++.... -.+.+.++|+.|+||||+|+.+.+......... -. ..++.-...+.+-.
T Consensus 17 ~~viGq~~~~~~L~~~i~~~~-----l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~-~~----~~Cg~C~sC~~~~~ 86 (614)
T PRK14971 17 ESVVGQEALTTTLKNAIATNK-----LAHAYLFCGPRGVGKTTCARIFAKTINCQNLTA-DG----EACNECESCVAFNE 86 (614)
T ss_pred HHhcCcHHHHHHHHHHHHcCC-----CCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCC-CC----CCCCcchHHHHHhc
Confidence 468999999999999986532 235688999999999999999876432111000 00 00000000011100
Q ss_pred HhcC-----CCCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE-Eccchhhhh
Q 000594 234 SITL-----SPCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV-TTRSMDVAS 303 (1402)
Q Consensus 234 ~~~~-----~~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv-TtR~~~v~~ 303 (1402)
.-.. ...+....+++...+.+. ..+++-++|+|++..-....++.+...+..-..++.+|+ ||+...+..
T Consensus 87 ~~~~n~~~ld~~~~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls~~a~naLLK~LEepp~~tifIL~tt~~~kIl~ 166 (614)
T PRK14971 87 QRSYNIHELDAASNNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLSQAAFNAFLKTLEEPPSYAIFILATTEKHKILP 166 (614)
T ss_pred CCCCceEEecccccCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCCHHHHHHHHHHHhCCCCCeEEEEEeCCchhchH
Confidence 0000 000011122222222111 124555889999976655677778777765545666555 445444444
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.+... ...+++++++.++....+.+.+-..+-.. -.+.+..|++.++|..--+
T Consensus 167 tI~SR-c~iv~f~~ls~~ei~~~L~~ia~~egi~i----~~~al~~La~~s~gdlr~a 219 (614)
T PRK14971 167 TILSR-CQIFDFNRIQVADIVNHLQYVASKEGITA----EPEALNVIAQKADGGMRDA 219 (614)
T ss_pred HHHhh-hheeecCCCCHHHHHHHHHHHHHHcCCCC----CHHHHHHHHHHcCCCHHHH
Confidence 33222 23466999999999988887664332211 1456788999999976543
No 139
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=97.71 E-value=0.00028 Score=81.32 Aligned_cols=149 Identities=15% Similarity=0.161 Sum_probs=82.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.++..+.+..++... .-..++.++|++|+||||+|+.+++.. .. ....+..+. ... ...++.+.
T Consensus 21 ~~~~~~~~~~~~l~~~~~~~-----~~~~~lll~G~~G~GKT~la~~l~~~~-~~---~~~~i~~~~-~~~-~~i~~~l~ 89 (316)
T PHA02544 21 DECILPAADKETFKSIVKKG-----RIPNMLLHSPSPGTGKTTVAKALCNEV-GA---EVLFVNGSD-CRI-DFVRNRLT 89 (316)
T ss_pred HHhcCcHHHHHHHHHHHhcC-----CCCeEEEeeCcCCCCHHHHHHHHHHHh-Cc---cceEeccCc-ccH-HHHHHHHH
Confidence 56899999999999998643 234678889999999999999998752 21 122333333 111 11111111
Q ss_pred HhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccchh-hhhhcCCCcce
Q 000594 234 SITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMD-VASTMGSGKNY 311 (1402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~ 311 (1402)
.... .. ...+.+-++|+||+... ..+..+.+...+.....++++|+||.... +...... ...
T Consensus 90 ~~~~-------------~~--~~~~~~~vliiDe~d~l~~~~~~~~L~~~le~~~~~~~~Ilt~n~~~~l~~~l~s-R~~ 153 (316)
T PHA02544 90 RFAS-------------TV--SLTGGGKVIIIDEFDRLGLADAQRHLRSFMEAYSKNCSFIITANNKNGIIEPLRS-RCR 153 (316)
T ss_pred HHHH-------------hh--cccCCCeEEEEECcccccCHHHHHHHHHHHHhcCCCceEEEEcCChhhchHHHHh-hce
Confidence 1100 00 01234567899999543 22223334333444446778888886533 1111111 112
Q ss_pred eecccCCChhhHHHHHHH
Q 000594 312 ELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 312 ~~~l~~L~~~~~~~lf~~ 329 (1402)
.+.++..+.++..+++..
T Consensus 154 ~i~~~~p~~~~~~~il~~ 171 (316)
T PHA02544 154 VIDFGVPTKEEQIEMMKQ 171 (316)
T ss_pred EEEeCCCCHHHHHHHHHH
Confidence 344666777776665543
No 140
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=97.71 E-value=0.00081 Score=79.99 Aligned_cols=167 Identities=10% Similarity=0.113 Sum_probs=97.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccC-ceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCe
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKK 260 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 260 (1402)
.-+.|+|..|+|||+|++++++.....+-. .+++++ ..++...+...+.... .....+++.++ +.
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~------~~~f~~~~~~~l~~~~-------~~~~~~~~~~~-~~ 207 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMS------GDEFARKAVDILQKTH-------KEIEQFKNEIC-QN 207 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE------HHHHHHHHHHHHHHhh-------hHHHHHHHHhc-cC
Confidence 357899999999999999998753222212 223333 3456666666654210 11223444443 34
Q ss_pred EEEEEeCCCcCCh-hhH-HHhhcccCC-CCCCcEEEEEccch---------hhhhhcCCCcceeecccCCChhhHHHHHH
Q 000594 261 FLIVLDDVWSERY-DLW-QALKSPFMA-GAPGSRIIVTTRSM---------DVASTMGSGKNYELELKLLSDDDRWSVFV 328 (1402)
Q Consensus 261 ~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~lf~ 328 (1402)
-+||+||+..... +.| +.+...+.. ...|..||+|+... ++...+..+ ..+++++++.++-.+++.
T Consensus 208 dvLiIDDiq~l~~k~~~~e~lf~l~N~~~~~~k~iIltsd~~P~~l~~l~~rL~SR~~~G--l~~~L~~pd~e~r~~iL~ 285 (450)
T PRK14087 208 DVLIIDDVQFLSYKEKTNEIFFTIFNNFIENDKQLFFSSDKSPELLNGFDNRLITRFNMG--LSIAIQKLDNKTATAIIK 285 (450)
T ss_pred CEEEEeccccccCCHHHHHHHHHHHHHHHHcCCcEEEECCCCHHHHhhccHHHHHHHhCC--ceeccCCcCHHHHHHHHH
Confidence 4888999954321 222 223222221 12455788887642 222233332 234599999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHh
Q 000594 329 NHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGG 366 (1402)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~ 366 (1402)
+++-..+-. ..--+++..-|++.++|.|-.+.-+..
T Consensus 286 ~~~~~~gl~--~~l~~evl~~Ia~~~~gd~R~L~gaL~ 321 (450)
T PRK14087 286 KEIKNQNIK--QEVTEEAINFISNYYSDDVRKIKGSVS 321 (450)
T ss_pred HHHHhcCCC--CCCCHHHHHHHHHccCCCHHHHHHHHH
Confidence 888432210 012267888899999999977765543
No 141
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=97.67 E-value=0.00046 Score=88.12 Aligned_cols=157 Identities=15% Similarity=0.205 Sum_probs=84.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-----CceeEEEeCCCCCHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-----~~~~wv~~~~~~~~~~~~ 228 (1402)
..++||+++++++++.|..... .-+.++|++|+|||++|+.+++....... +..+|.. +...
T Consensus 182 ~~~igr~~ei~~~~~~L~~~~~------~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~-----~~~~-- 248 (731)
T TIGR02639 182 DPLIGREDELERTIQVLCRRKK------NNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSL-----DMGS-- 248 (731)
T ss_pred CcccCcHHHHHHHHHHHhcCCC------CceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEe-----cHHH--
Confidence 3589999999999998865432 23579999999999999999876422221 3344421 1111
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHHHHHh-cCCeEEEEEeCCCcC---------ChhhHHHhhcccCCCCCCcEEEEEccc
Q 000594 229 KAILESITLSPCDLKDLNSVQLKLKEAV-FKKKFLIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
+.... ....+.++....+.+.+ ..++.+|++|++..- +.+. ..+..+....+ .-++|-+|..
T Consensus 249 --l~a~~----~~~g~~e~~l~~i~~~~~~~~~~ILfiDEih~l~~~g~~~~~~~~~-~~~L~~~l~~g-~i~~IgaTt~ 320 (731)
T TIGR02639 249 --LLAGT----KYRGDFEERLKAVVSEIEKEPNAILFIDEIHTIVGAGATSGGSMDA-SNLLKPALSSG-KLRCIGSTTY 320 (731)
T ss_pred --Hhhhc----cccchHHHHHHHHHHHHhccCCeEEEEecHHHHhccCCCCCccHHH-HHHHHHHHhCC-CeEEEEecCH
Confidence 11100 01122233222333222 346889999998521 0111 22333322222 2344444443
Q ss_pred hhhhhhcCC-----CcceeecccCCChhhHHHHHHHhh
Q 000594 299 MDVASTMGS-----GKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 299 ~~v~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
.+....... .....+++++++.++..+++....
T Consensus 321 ~e~~~~~~~d~al~rRf~~i~v~~p~~~~~~~il~~~~ 358 (731)
T TIGR02639 321 EEYKNHFEKDRALSRRFQKIDVGEPSIEETVKILKGLK 358 (731)
T ss_pred HHHHHHhhhhHHHHHhCceEEeCCCCHHHHHHHHHHHH
Confidence 222111110 012346699999999999998655
No 142
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=97.66 E-value=0.00074 Score=74.88 Aligned_cols=162 Identities=14% Similarity=0.105 Sum_probs=81.2
Q ss_pred ccccchHHHHHHHHH---Hhc------CCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCCH
Q 000594 155 AVYGRDEDKARILDM---VLE------NDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFDV 224 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~---L~~------~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~~ 224 (1402)
.++|.+..+++|.+. ... ......+...-+.++|++|+||||+|+.+++.... ..-....++.++..
T Consensus 7 ~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~--- 83 (261)
T TIGR02881 7 RMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERA--- 83 (261)
T ss_pred HhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHH---
Confidence 478888777666433 211 00011134456789999999999999999864311 11111223333221
Q ss_pred HHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC--------hhhHHHhhcccCCCCCCcEEEEEc
Q 000594 225 LRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER--------YDLWQALKSPFMAGAPGSRIIVTT 296 (1402)
Q Consensus 225 ~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~--------~~~~~~~~~~l~~~~~gs~iivTt 296 (1402)
++.... ++ .........+.+. ..-+|++|++..-. .+..+.+...+........+|+++
T Consensus 84 -~l~~~~---~g------~~~~~~~~~~~~a---~~~VL~IDE~~~L~~~~~~~~~~~~i~~Ll~~~e~~~~~~~vila~ 150 (261)
T TIGR02881 84 -DLVGEY---IG------HTAQKTREVIKKA---LGGVLFIDEAYSLARGGEKDFGKEAIDTLVKGMEDNRNEFVLILAG 150 (261)
T ss_pred -Hhhhhh---cc------chHHHHHHHHHhc---cCCEEEEechhhhccCCccchHHHHHHHHHHHHhccCCCEEEEecC
Confidence 111110 00 0011122222222 12488999995311 123344544444433334556665
Q ss_pred cchhhhh------hcCCCcceeecccCCChhhHHHHHHHhhc
Q 000594 297 RSMDVAS------TMGSGKNYELELKLLSDDDRWSVFVNHAF 332 (1402)
Q Consensus 297 R~~~v~~------~~~~~~~~~~~l~~L~~~~~~~lf~~~a~ 332 (1402)
...+... .....-...+++++++.++-.+++.+.+-
T Consensus 151 ~~~~~~~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~ 192 (261)
T TIGR02881 151 YSDEMDYFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVK 192 (261)
T ss_pred CcchhHHHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHH
Confidence 4433211 11111134567999999999999987763
No 143
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=97.65 E-value=0.0006 Score=87.51 Aligned_cols=157 Identities=13% Similarity=0.181 Sum_probs=84.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-----cCceeE-EEeCCCCCHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAW-VCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----f~~~~w-v~~~~~~~~~~~ 227 (1402)
..++||+.++.++++.|..... .-+.++|.+|+||||+|+.++++..... .+..+| +.++.
T Consensus 187 d~~iGr~~ei~~~i~~l~r~~~------~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~~------- 253 (852)
T TIGR03345 187 DPVLGRDDEIRQMIDILLRRRQ------NNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLGL------- 253 (852)
T ss_pred CcccCCHHHHHHHHHHHhcCCc------CceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehhh-------
Confidence 4689999999999999866432 2356999999999999999987642221 122333 22111
Q ss_pred HHHHHHHhcCCCCCcCchHH-HHHHHHHHh-cCCeEEEEEeCCCcCC-------hhhHHHhhcccCCCCCCcEEEEEccc
Q 000594 228 SKAILESITLSPCDLKDLNS-VQLKLKEAV-FKKKFLIVLDDVWSER-------YDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~-~~~~l~~~l-~~k~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
+........+.++ +...+.+.- .+++.+|++|++..-. ..+-..+..+....+ .-++|-||..
T Consensus 254 -------l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~n~Lkp~l~~G-~l~~IgaTT~ 325 (852)
T TIGR03345 254 -------LQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQGDAANLLKPALARG-ELRTIAATTW 325 (852)
T ss_pred -------hhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccccHHHHhhHHhhCC-CeEEEEecCH
Confidence 0000001111211 111222221 2578999999985421 111122333332221 2456666655
Q ss_pred hhhhhhcCCC-----cceeecccCCChhhHHHHHHHhh
Q 000594 299 MDVASTMGSG-----KNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 299 ~~v~~~~~~~-----~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
.+........ ....+.+++++.++..+++....
T Consensus 326 ~e~~~~~~~d~AL~rRf~~i~v~eps~~~~~~iL~~~~ 363 (852)
T TIGR03345 326 AEYKKYFEKDPALTRRFQVVKVEEPDEETAIRMLRGLA 363 (852)
T ss_pred HHHhhhhhccHHHHHhCeEEEeCCCCHHHHHHHHHHHH
Confidence 3332211111 12346699999999999975443
No 144
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.64 E-value=0.00085 Score=76.01 Aligned_cols=169 Identities=14% Similarity=0.136 Sum_probs=92.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHHHHHHHHHHHhcC-----C------CCCcCchHH
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVLRISKAILESITL-----S------PCDLKDLNS 247 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~~~~~~-----~------~~~~~~~~~ 247 (1402)
-...+.++|+.|+||||+|+.+++...... .+. .....-...+.+...-.. . ....+++.+
T Consensus 21 ~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~-------~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~~~i~id~iR~ 93 (328)
T PRK05707 21 HPHAYLLHGPAGIGKRALAERLAAALLCEAPQGG-------GACGSCKGCQLLRAGSHPDNFVLEPEEADKTIKVDQVRE 93 (328)
T ss_pred cceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCC-------CCCCCCHHHHHHhcCCCCCEEEEeccCCCCCCCHHHHHH
Confidence 345788999999999999999887542211 100 000000111111100000 0 001111222
Q ss_pred HHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh-hhhhcCCCcceeecccCCChhhHHH
Q 000594 248 VQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VASTMGSGKNYELELKLLSDDDRWS 325 (1402)
Q Consensus 248 ~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~ 325 (1402)
+...+... ..+++-++|+|++..-+......+...+-.-..++.+|+||.+.+ +.....+ ....+.+.+++.+++.+
T Consensus 94 l~~~~~~~~~~~~~kv~iI~~a~~m~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~S-Rc~~~~~~~~~~~~~~~ 172 (328)
T PRK05707 94 LVSFVVQTAQLGGRKVVLIEPAEAMNRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKS-RCQQQACPLPSNEESLQ 172 (328)
T ss_pred HHHHHhhccccCCCeEEEECChhhCCHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHh-hceeeeCCCcCHHHHHH
Confidence 22222211 123444557799977677777888777765445677777777643 3333222 23446699999999998
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 326 VFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 326 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
.+.+.. ... ..+.+..++..++|.|..+..+
T Consensus 173 ~L~~~~-~~~-------~~~~~~~~l~la~Gsp~~A~~l 203 (328)
T PRK05707 173 WLQQAL-PES-------DERERIELLTLAGGSPLRALQL 203 (328)
T ss_pred HHHHhc-ccC-------ChHHHHHHHHHcCCCHHHHHHH
Confidence 887653 111 1334567789999999765544
No 145
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=97.62 E-value=0.00016 Score=82.91 Aligned_cols=109 Identities=15% Similarity=0.142 Sum_probs=72.2
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccccCceeEEEeCCCCCHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++++.++..+.+...|... +.+.++|++|+|||++|+++++.. ....|+.+.||++++..+..+++..+.
T Consensus 175 ~d~~i~e~~le~l~~~L~~~--------~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~G~r 246 (459)
T PRK11331 175 NDLFIPETTIETILKRLTIK--------KNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQGYR 246 (459)
T ss_pred hcccCCHHHHHHHHHHHhcC--------CCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhcccC
Confidence 45788899999999998642 367889999999999999998765 345678888999999888776654321
Q ss_pred HHhcCCCCCcCch-HHHHHHHHHHhc--CCeEEEEEeCCCcCChh
Q 000594 233 ESITLSPCDLKDL-NSVQLKLKEAVF--KKKFLIVLDDVWSERYD 274 (1402)
Q Consensus 233 ~~~~~~~~~~~~~-~~~~~~l~~~l~--~k~~LlVlDdv~~~~~~ 274 (1402)
- ......-. ......+++... ++++++|+|++...+.+
T Consensus 247 P----~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani~ 287 (459)
T PRK11331 247 P----NGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANLS 287 (459)
T ss_pred C----CCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCHH
Confidence 1 10010000 011122222222 47899999999655433
No 146
>CHL00095 clpC Clp protease ATP binding subunit
Probab=97.61 E-value=0.0004 Score=89.75 Aligned_cols=157 Identities=13% Similarity=0.146 Sum_probs=84.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-----CceeEEEeCCCCCHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-----EPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-----~~~~wv~~~~~~~~~~~~ 228 (1402)
..++||+++++++++.|..... .-+.++|++|+|||++|+.++.......- +..+|.- +...++
T Consensus 179 ~~~igr~~ei~~~~~~L~r~~~------~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l-----~~~~l~ 247 (821)
T CHL00095 179 DPVIGREKEIERVIQILGRRTK------NNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITL-----DIGLLL 247 (821)
T ss_pred CCCCCcHHHHHHHHHHHccccc------CCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEe-----eHHHHh
Confidence 3589999999999999975432 23569999999999999999876422211 2344421 111111
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHH-HHHhcCCeEEEEEeCCCcC-------ChhhHHHhhcccCCCCCCcEEEEEccchh
Q 000594 229 KAILESITLSPCDLKDLNSVQLKL-KEAVFKKKFLIVLDDVWSE-------RYDLWQALKSPFMAGAPGSRIIVTTRSMD 300 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~-------~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 300 (1402)
. +. ....+.++....+ .+.-..++.+|++|++..- ...+...+..+....+ .-++|.+|...+
T Consensus 248 ----a---g~-~~~ge~e~rl~~i~~~~~~~~~~ILfiDEih~l~~~g~~~g~~~~a~lLkp~l~rg-~l~~IgaTt~~e 318 (821)
T CHL00095 248 ----A---GT-KYRGEFEERLKRIFDEIQENNNIILVIDEVHTLIGAGAAEGAIDAANILKPALARG-ELQCIGATTLDE 318 (821)
T ss_pred ----c---cC-CCccHHHHHHHHHHHHHHhcCCeEEEEecHHHHhcCCCCCCcccHHHHhHHHHhCC-CcEEEEeCCHHH
Confidence 1 11 1112233322222 2222357899999999420 0011223333332222 234555555544
Q ss_pred hhhhcCC-----CcceeecccCCChhhHHHHHHHh
Q 000594 301 VASTMGS-----GKNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 301 v~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
....... .....++++..+.++...++...
T Consensus 319 y~~~ie~D~aL~rRf~~I~v~ep~~~e~~aILr~l 353 (821)
T CHL00095 319 YRKHIEKDPALERRFQPVYVGEPSVEETIEILFGL 353 (821)
T ss_pred HHHHHhcCHHHHhcceEEecCCCCHHHHHHHHHHH
Confidence 3221111 12234568888888888887643
No 147
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=97.60 E-value=0.0017 Score=77.22 Aligned_cols=159 Identities=14% Similarity=0.142 Sum_probs=89.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccC-ceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCe
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKK 260 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 260 (1402)
..+.|+|..|+|||+||+++++...+.... .+++++ ..++...+...+... ..+. +.+.+++ .
T Consensus 137 n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~------~~~~~~~~~~~~~~~-----~~~~----~~~~~~~-~ 200 (405)
T TIGR00362 137 NPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS------SEKFTNDFVNALRNN-----KMEE----FKEKYRS-V 200 (405)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE------HHHHHHHHHHHHHcC-----CHHH----HHHHHHh-C
Confidence 468899999999999999999864332222 234554 234444555554321 1222 2333322 3
Q ss_pred EEEEEeCCCcCChh-hH-HHhhcccCCC-CCCcEEEEEccch-hh--------hhhcCCCcceeecccCCChhhHHHHHH
Q 000594 261 FLIVLDDVWSERYD-LW-QALKSPFMAG-APGSRIIVTTRSM-DV--------ASTMGSGKNYELELKLLSDDDRWSVFV 328 (1402)
Q Consensus 261 ~LlVlDdv~~~~~~-~~-~~~~~~l~~~-~~gs~iivTtR~~-~v--------~~~~~~~~~~~~~l~~L~~~~~~~lf~ 328 (1402)
-+||+||+...... .+ +.+...+... ..|..||+|+... .- ...+.. ...+++++.+.++-.+++.
T Consensus 201 dlLiiDDi~~l~~~~~~~~~l~~~~n~~~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--g~~v~i~~pd~~~r~~il~ 278 (405)
T TIGR00362 201 DLLLIDDIQFLAGKERTQEEFFHTFNALHENGKQIVLTSDRPPKELPGLEERLRSRFEW--GLVVDIEPPDLETRLAILQ 278 (405)
T ss_pred CEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCCEEEecCCCHHHHhhhhhhhhhhccC--CeEEEeCCCCHHHHHHHHH
Confidence 48899999542111 11 2222222111 2355688887642 11 111111 2345689999999999999
Q ss_pred HhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 329 NHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 329 ~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
+.+-..+-.- -+++...|++.+.|.+-.+.
T Consensus 279 ~~~~~~~~~l----~~e~l~~ia~~~~~~~r~l~ 308 (405)
T TIGR00362 279 KKAEEEGLEL----PDEVLEFIAKNIRSNVRELE 308 (405)
T ss_pred HHHHHcCCCC----CHHHHHHHHHhcCCCHHHHH
Confidence 8874332111 25677888888888765443
No 148
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=97.60 E-value=0.0015 Score=72.85 Aligned_cols=133 Identities=14% Similarity=0.056 Sum_probs=72.3
Q ss_pred EEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
-+.++|++|+||||+|+.++..... ......-|+.++. .+ +...+.+.. .......+.+. ..-
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~----~~----l~~~~~g~~-----~~~~~~~~~~a---~~g 123 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTR----DD----LVGQYIGHT-----APKTKEILKRA---MGG 123 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecH----HH----HhHhhcccc-----hHHHHHHHHHc---cCc
Confidence 5789999999999999887764311 1222223555442 12 222221111 11122223322 235
Q ss_pred EEEEeCCCcC---------ChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcCC------CcceeecccCCChhhHHHH
Q 000594 262 LIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMGS------GKNYELELKLLSDDDRWSV 326 (1402)
Q Consensus 262 LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~------~~~~~~~l~~L~~~~~~~l 326 (1402)
+|++|++..- ..+.++.+...+.....+.+||+++........... .-...+++++++.+|-.++
T Consensus 124 vL~iDEi~~L~~~~~~~~~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~~~~~np~L~sR~~~~i~fp~l~~edl~~I 203 (284)
T TIGR02880 124 VLFIDEAYYLYRPDNERDYGQEAIEILLQVMENQRDDLVVILAGYKDRMDSFFESNPGFSSRVAHHVDFPDYSEAELLVI 203 (284)
T ss_pred EEEEechhhhccCCCccchHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHHHHhhCHHHHhhCCcEEEeCCcCHHHHHHH
Confidence 8899999521 122344455555444456677777654333222111 1134567999999999999
Q ss_pred HHHhh
Q 000594 327 FVNHA 331 (1402)
Q Consensus 327 f~~~a 331 (1402)
+...+
T Consensus 204 ~~~~l 208 (284)
T TIGR02880 204 AGLML 208 (284)
T ss_pred HHHHH
Confidence 88776
No 149
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=97.57 E-value=0.0022 Score=76.29 Aligned_cols=158 Identities=18% Similarity=0.151 Sum_probs=90.4
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
-+.|+|.+|+|||+||+++++...+.+.+. ++|++. .++..++...+... ..+ .+++..+.+.-
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~------~~f~~~~~~~~~~~-----~~~----~f~~~~~~~~d 196 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS------EKFLNDLVDSMKEG-----KLN----EFREKYRKKVD 196 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH------HHHHHHHHHHHhcc-----cHH----HHHHHHHhcCC
Confidence 489999999999999999998644333333 445543 34556665555321 122 23333334456
Q ss_pred EEEEeCCCcC-ChhhH-HHhhcccCC-CCCCcEEEEEcc-chhh--------hhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 262 LIVLDDVWSE-RYDLW-QALKSPFMA-GAPGSRIIVTTR-SMDV--------ASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 262 LlVlDdv~~~-~~~~~-~~~~~~l~~-~~~gs~iivTtR-~~~v--------~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
+||+||+..- +...+ +.+...+.. ...|..||+||. .+.- ...+..+ ..+++++.+.++-.+++.+
T Consensus 197 vLlIDDi~~l~~~~~~q~elf~~~n~l~~~~k~iIitsd~~p~~l~~l~~rL~SR~~~g--l~v~i~~pd~e~r~~IL~~ 274 (440)
T PRK14088 197 VLLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDREPQKLSEFQDRLVSRFQMG--LVAKLEPPDEETRKKIARK 274 (440)
T ss_pred EEEEechhhhcCcHHHHHHHHHHHHHHHHcCCeEEEECCCCHHHHHHHHHHHhhHHhcC--ceEeeCCCCHHHHHHHHHH
Confidence 8999999532 11111 122222211 113457888875 3221 1112222 2345999999999999988
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.+...+-. . -.++..-|++.+.|..-.+
T Consensus 275 ~~~~~~~~-l---~~ev~~~Ia~~~~~~~R~L 302 (440)
T PRK14088 275 MLEIEHGE-L---PEEVLNFVAENVDDNLRRL 302 (440)
T ss_pred HHHhcCCC-C---CHHHHHHHHhccccCHHHH
Confidence 87432211 1 2567788888888765444
No 150
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=97.56 E-value=0.0016 Score=73.51 Aligned_cols=197 Identities=16% Similarity=0.132 Sum_probs=111.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccc--------------ccCceeEEEeC
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE--------------AFEPKAWVCVS 219 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--------------~f~~~~wv~~~ 219 (1402)
.+++|.+..++.+...+.... -.....++|+.|+||+++|..+.+..... .++...|+.-.
T Consensus 4 ~~iiGq~~~~~~L~~~i~~~r-----l~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i~p~ 78 (314)
T PRK07399 4 ANLIGQPLAIELLTAAIKQNR-----IAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWVEPT 78 (314)
T ss_pred HHhCCHHHHHHHHHHHHHhCC-----CCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEEecc
Confidence 358899999999999986542 23588999999999999999987654221 12233444311
Q ss_pred CCCCHHHHHHHHHHHhcCCCC--CcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEE
Q 000594 220 HDFDVLRISKAILESITLSPC--DLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRI 292 (1402)
Q Consensus 220 ~~~~~~~~~~~i~~~~~~~~~--~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~i 292 (1402)
...+-..+-..-++..+.... ..-.+++. ..+.+.+ .+++-++|+|++..-+......+...+-.-.+..-|
T Consensus 79 ~~~~g~~~~~~~~~~~~~~~~~~~~I~id~i-r~i~~~l~~~p~~~~~kVvII~~ae~m~~~aaNaLLK~LEEPp~~~fI 157 (314)
T PRK07399 79 YQHQGKLITASEAEEAGLKRKAPPQIRLEQI-REIKRFLSRPPLEAPRKVVVIEDAETMNEAAANALLKTLEEPGNGTLI 157 (314)
T ss_pred ccccccccchhhhhhccccccccccCcHHHH-HHHHHHHccCcccCCceEEEEEchhhcCHHHHHHHHHHHhCCCCCeEE
Confidence 000000011111112111000 01112222 2233332 356778999999666666677777766433333334
Q ss_pred EEEccchhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 293 IVTTRSMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 293 ivTtR~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
++|++...+...... ....+++.++++++..+.+.+...... .......++..++|.|..+..+
T Consensus 158 Li~~~~~~Ll~TI~S-Rcq~i~f~~l~~~~~~~~L~~~~~~~~-------~~~~~~~l~~~a~Gs~~~al~~ 221 (314)
T PRK07399 158 LIAPSPESLLPTIVS-RCQIIPFYRLSDEQLEQVLKRLGDEEI-------LNINFPELLALAQGSPGAAIAN 221 (314)
T ss_pred EEECChHhCcHHHHh-hceEEecCCCCHHHHHHHHHHhhcccc-------chhHHHHHHHHcCCCHHHHHHH
Confidence 445444444443332 235567999999999999987642110 0111357889999999765543
No 151
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=97.50 E-value=1.7e-05 Score=84.96 Aligned_cols=87 Identities=20% Similarity=0.179 Sum_probs=61.0
Q ss_pred cccccccccceeccCcccc-----ccchhhhcCCCCcEEecCCccccc----cCchhh-------hcccccccccccCcc
Q 000594 588 SIGCLKHLRYLNFSNSWIQ-----CLPEVITSLFNLEILILSNCWFLL----KLPSSI-------GNLVNLHHLDIEGAY 651 (1402)
Q Consensus 588 ~i~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~LdLs~~~~~~----~lP~~i-------~~L~~L~~L~l~~~~ 651 (1402)
.+-.+..+.+++||+|.+. .+-+.+.+.++|+.-++|+- +.+ ++|+.+ -..++|++|+||.|-
T Consensus 25 ~~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~-ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA 103 (382)
T KOG1909|consen 25 ELEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDM-FTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNA 103 (382)
T ss_pred HhcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhh-hcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccc
Confidence 4556788999999999876 35566888899999999874 333 345543 444689999999998
Q ss_pred cccccccC----cccccccccccceecC
Q 000594 652 QLCELPLG----MKELKCLRTLTNFIVG 675 (1402)
Q Consensus 652 ~l~~lp~~----i~~L~~L~~L~~~~~~ 675 (1402)
.-..-++. +...++|++|.....+
T Consensus 104 ~G~~g~~~l~~ll~s~~~L~eL~L~N~G 131 (382)
T KOG1909|consen 104 FGPKGIRGLEELLSSCTDLEELYLNNCG 131 (382)
T ss_pred cCccchHHHHHHHHhccCHHHHhhhcCC
Confidence 54444443 4456777777654443
No 152
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=97.49 E-value=0.00069 Score=79.42 Aligned_cols=180 Identities=17% Similarity=0.161 Sum_probs=95.3
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
.++.|+++.++++.+.+...-. -+...++-|.++|++|+|||++|+++++.. ... |+.++. .+
T Consensus 131 ~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~-~~~-----~i~v~~----~~ 200 (389)
T PRK03992 131 EDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHET-NAT-----FIRVVG----SE 200 (389)
T ss_pred HHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHh-CCC-----EEEeeh----HH
Confidence 4688999999999887632100 011334568899999999999999998752 222 333321 11
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-----------ChhhHHHhhccc---CC--CCCCc
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-----------RYDLWQALKSPF---MA--GAPGS 290 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~~~~~~~~l---~~--~~~gs 290 (1402)
+. ..... .....+...+...-...+.+|++||+..- +.+.+..+...+ .. ...+.
T Consensus 201 l~----~~~~g-----~~~~~i~~~f~~a~~~~p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v 271 (389)
T PRK03992 201 LV----QKFIG-----EGARLVRELFELAREKAPSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNV 271 (389)
T ss_pred Hh----Hhhcc-----chHHHHHHHHHHHHhcCCeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCE
Confidence 11 11100 00111111222222356789999999431 111122222222 11 12356
Q ss_pred EEEEEccchhhhhh-cCC--CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 291 RIIVTTRSMDVAST-MGS--GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 291 ~iivTtR~~~v~~~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
.||.||...+.... +.. .-...+++++.+.++-.++|..+..+..-. ...+ ...+++.+.|.
T Consensus 272 ~VI~aTn~~~~ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~~-~~~~----~~~la~~t~g~ 336 (389)
T PRK03992 272 KIIAATNRIDILDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNLA-DDVD----LEELAELTEGA 336 (389)
T ss_pred EEEEecCChhhCCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCCC-CcCC----HHHHHHHcCCC
Confidence 78878876443221 111 112456799999999999998877432211 1112 34566666664
No 153
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.49 E-value=1.1e-05 Score=74.06 Aligned_cols=89 Identities=25% Similarity=0.236 Sum_probs=51.4
Q ss_pred cCCCcccEEEecccccccccccccc-cccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccc
Q 000594 567 PKCKKLRVLSLGRYLITEVPVSIGC-LKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHL 645 (1402)
Q Consensus 567 ~~l~~Lr~L~L~~~~i~~lp~~i~~-l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L 645 (1402)
.....|...+|++|.+..+|+.|.. .+.+..|+|++|.|..+|..+..++.|+.|+++.| .+...|..|..|.+|-.|
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N-~l~~~p~vi~~L~~l~~L 128 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFN-PLNAEPRVIAPLIKLDML 128 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccC-ccccchHHHHHHHhHHHh
Confidence 3444555556666666666555432 23566666666666666666666666666666665 344555656666666666
Q ss_pred cccCcccccccc
Q 000594 646 DIEGAYQLCELP 657 (1402)
Q Consensus 646 ~l~~~~~l~~lp 657 (1402)
+..+|. ...+|
T Consensus 129 ds~~na-~~eid 139 (177)
T KOG4579|consen 129 DSPENA-RAEID 139 (177)
T ss_pred cCCCCc-cccCc
Confidence 665554 44444
No 154
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=97.49 E-value=0.0018 Score=67.77 Aligned_cols=107 Identities=23% Similarity=0.271 Sum_probs=64.6
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
.-..++|.+.+++.|++-...=-.. ....-+.+||..|.|||++++++.+....... --|.|.
T Consensus 25 ~l~~L~Gie~Qk~~l~~Nt~~Fl~G--~pannvLL~G~rGtGKSSlVkall~~y~~~GL---RlIev~------------ 87 (249)
T PF05673_consen 25 RLDDLIGIERQKEALIENTEQFLQG--LPANNVLLWGARGTGKSSLVKALLNEYADQGL---RLIEVS------------ 87 (249)
T ss_pred CHHHhcCHHHHHHHHHHHHHHHHcC--CCCcceEEecCCCCCHHHHHHHHHHHHhhcCc---eEEEEC------------
Confidence 3467999999999887643210000 12235778999999999999999875322221 112222
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCc-CChhhHHHhhcccC
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWS-ERYDLWQALKSPFM 284 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~ 284 (1402)
..+..++..+...++. +..||+|++||+.= +.......++..+-
T Consensus 88 -------k~~L~~l~~l~~~l~~--~~~kFIlf~DDLsFe~~d~~yk~LKs~Le 132 (249)
T PF05673_consen 88 -------KEDLGDLPELLDLLRD--RPYKFILFCDDLSFEEGDTEYKALKSVLE 132 (249)
T ss_pred -------HHHhccHHHHHHHHhc--CCCCEEEEecCCCCCCCcHHHHHHHHHhc
Confidence 2233445555555553 46899999999843 22344555655554
No 155
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=97.45 E-value=0.0015 Score=82.17 Aligned_cols=158 Identities=14% Similarity=0.196 Sum_probs=87.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-----cCceeEEEeCCCCCHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~ 228 (1402)
..++||++++.++++.|..... .-+.++|.+|+|||++|+.++...+... .++.+|.. +..
T Consensus 186 ~~liGR~~ei~~~i~iL~r~~~------~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l-----~~~--- 251 (758)
T PRK11034 186 DPLIGREKELERAIQVLCRRRK------NNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSL-----DIG--- 251 (758)
T ss_pred CcCcCCCHHHHHHHHHHhccCC------CCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEec-----cHH---
Confidence 3589999999999999876432 2346899999999999999987543222 23344421 111
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHHHHHh-cCCeEEEEEeCCCcC--------ChhhHHHhhcccCCCCCCcEEEEEccch
Q 000594 229 KAILESITLSPCDLKDLNSVQLKLKEAV-FKKKFLIVLDDVWSE--------RYDLWQALKSPFMAGAPGSRIIVTTRSM 299 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~--------~~~~~~~~~~~l~~~~~gs~iivTtR~~ 299 (1402)
.++. ......+.++....+.+.+ +.++.+|++|++..- ...+...+..++...+ .-+||-+|...
T Consensus 252 -~lla----G~~~~Ge~e~rl~~l~~~l~~~~~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L~~g-~i~vIgATt~~ 325 (758)
T PRK11034 252 -SLLA----GTKYRGDFEKRFKALLKQLEQDTNSILFIDEIHTIIGAGAASGGQVDAANLIKPLLSSG-KIRVIGSTTYQ 325 (758)
T ss_pred -HHhc----ccchhhhHHHHHHHHHHHHHhcCCCEEEeccHHHHhccCCCCCcHHHHHHHHHHHHhCC-CeEEEecCChH
Confidence 1111 0011112233222222222 356789999999531 1122333444444332 23455555444
Q ss_pred hhhhhcCCC-----cceeecccCCChhhHHHHHHHhh
Q 000594 300 DVASTMGSG-----KNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 300 ~v~~~~~~~-----~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
+........ .-..+++++.+.+++.+++....
T Consensus 326 E~~~~~~~D~AL~rRFq~I~v~ePs~~~~~~IL~~~~ 362 (758)
T PRK11034 326 EFSNIFEKDRALARRFQKIDITEPSIEETVQIINGLK 362 (758)
T ss_pred HHHHHhhccHHHHhhCcEEEeCCCCHHHHHHHHHHHH
Confidence 432111111 11346699999999999987654
No 156
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.45 E-value=0.00099 Score=81.32 Aligned_cols=51 Identities=14% Similarity=0.186 Sum_probs=40.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
-.+++|-+..++++..|+....... ...+++.|+|++|.||||+++.++..
T Consensus 83 ldel~~~~~ki~~l~~~l~~~~~~~-~~~~illL~GP~GsGKTTl~~~la~~ 133 (637)
T TIGR00602 83 QHELAVHKKKIEEVETWLKAQVLEN-APKRILLITGPSGCGKSTTIKILSKE 133 (637)
T ss_pred HHHhcCcHHHHHHHHHHHHhccccc-CCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4578999999999999986543221 33468999999999999999999875
No 157
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.41 E-value=4.2e-05 Score=70.37 Aligned_cols=99 Identities=18% Similarity=0.205 Sum_probs=69.7
Q ss_pred cccEEEeccccccccccc---ccccccccceeccCccccccchhhh-cCCCCcEEecCCccccccCchhhhccccccccc
Q 000594 571 KLRVLSLGRYLITEVPVS---IGCLKHLRYLNFSNSWIQCLPEVIT-SLFNLEILILSNCWFLLKLPSSIGNLVNLHHLD 646 (1402)
Q Consensus 571 ~Lr~L~L~~~~i~~lp~~---i~~l~~Lr~L~Ls~~~i~~lp~~i~-~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~ 646 (1402)
.+..+||+.|.+..+++. +....+|...+|++|.+++.|+.|. +.+.+.+|+|++| .+..+|.++..++.|+.|+
T Consensus 28 E~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~n-eisdvPeE~Aam~aLr~lN 106 (177)
T KOG4579|consen 28 ELHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANN-EISDVPEELAAMPALRSLN 106 (177)
T ss_pred HhhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchh-hhhhchHHHhhhHHhhhcc
Confidence 455677777776665543 4555677777888888888876654 3447778888877 4677787788888888888
Q ss_pred ccCcccccccccCcccccccccccc
Q 000594 647 IEGAYQLCELPLGMKELKCLRTLTN 671 (1402)
Q Consensus 647 l~~~~~l~~lp~~i~~L~~L~~L~~ 671 (1402)
++.|. +...|.-|..|.+|-.|+.
T Consensus 107 l~~N~-l~~~p~vi~~L~~l~~Lds 130 (177)
T KOG4579|consen 107 LRFNP-LNAEPRVIAPLIKLDMLDS 130 (177)
T ss_pred cccCc-cccchHHHHHHHhHHHhcC
Confidence 87776 6667777777777766653
No 158
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=97.41 E-value=0.0063 Score=72.17 Aligned_cols=153 Identities=15% Similarity=0.108 Sum_probs=83.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.-+.|+|+.|+|||+||+++++..... -..+++++ ...+...+...+... .. ..+++..+ +.-
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~-~~~v~yi~------~~~f~~~~~~~l~~~-----~~----~~f~~~~~-~~d 204 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRES-GGKILYVR------SELFTEHLVSAIRSG-----EM----QRFRQFYR-NVD 204 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHc-CCCEEEee------HHHHHHHHHHHHhcc-----hH----HHHHHHcc-cCC
Confidence 457899999999999999999864322 22334444 234444555544321 11 23344333 344
Q ss_pred EEEEeCCCcCChhhH--HHhhcccCC-CCCCcEEEEEccch-h--------hhhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 262 LIVLDDVWSERYDLW--QALKSPFMA-GAPGSRIIVTTRSM-D--------VASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~--~~~~~~l~~-~~~gs~iivTtR~~-~--------v~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
+|++||+..-....| +.+...+.. ...|..||+||... . +...+.. ...+++.+++.++-.+++.+
T Consensus 205 vLiIDDiq~l~~k~~~qeelf~l~N~l~~~~k~IIlts~~~p~~l~~l~~rL~SR~~~--Gl~~~l~~pd~e~r~~iL~~ 282 (445)
T PRK12422 205 ALFIEDIEVFSGKGATQEEFFHTFNSLHTEGKLIVISSTCAPQDLKAMEERLISRFEW--GIAIPLHPLTKEGLRSFLER 282 (445)
T ss_pred EEEEcchhhhcCChhhHHHHHHHHHHHHHCCCcEEEecCCCHHHHhhhHHHHHhhhcC--CeEEecCCCCHHHHHHHHHH
Confidence 888899844211111 122222111 01356788888542 1 1222222 24456999999999999988
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
++-..+-. . -+++..-|+..+.|.
T Consensus 283 k~~~~~~~-l---~~evl~~la~~~~~d 306 (445)
T PRK12422 283 KAEALSIR-I---EETALDFLIEALSSN 306 (445)
T ss_pred HHHHcCCC-C---CHHHHHHHHHhcCCC
Confidence 87432211 1 145566666666644
No 159
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.37 E-value=1.2e-05 Score=99.67 Aligned_cols=84 Identities=23% Similarity=0.313 Sum_probs=47.0
Q ss_pred ccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCc-ccCCccccCCCCCCCeeeccCCCCCCCCCCCCC
Q 000594 1274 GFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKL-ERLSSKGFQYLVSLEHLRVISCPNFTSFPEAGF 1352 (1402)
Q Consensus 1274 ~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L-~~l~~~~l~~l~~L~~L~l~~c~~l~~lp~~~~ 1352 (1402)
.+.+++.|+.+.+.+|. ..... ..+.+.+|++| ..+.. ......+|+.|+++.|...+.---...
T Consensus 357 ~~~~~~~l~~~~l~~~~-~~~~~------------~~~~l~gc~~l~~~l~~-~~~~~~~l~~L~l~~~~~~t~~~l~~~ 422 (482)
T KOG1947|consen 357 ILRSCPKLTDLSLSYCG-ISDLG------------LELSLRGCPNLTESLEL-RLCRSDSLRVLNLSDCRLVTDKGLRCL 422 (482)
T ss_pred HHhcCCCcchhhhhhhh-ccCcc------------hHHHhcCCcccchHHHH-HhccCCccceEecccCccccccchHHH
Confidence 44566666666666654 22211 13556667666 32221 122233388888888876665432111
Q ss_pred ---ccccccccccCCcchHHhh
Q 000594 1353 ---PSSLLSLEIRGCPLLENKC 1371 (1402)
Q Consensus 1353 ---~~sL~~L~i~~cp~l~~~~ 1371 (1402)
...+..+++.+|+.+....
T Consensus 423 ~~~~~~~~~l~~~~~~~~~~~~ 444 (482)
T KOG1947|consen 423 ADSCSNLKDLDLSGCRVITLKS 444 (482)
T ss_pred hhhhhccccCCccCcccccchh
Confidence 4567888888888776554
No 160
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=97.37 E-value=0.0039 Score=75.21 Aligned_cols=158 Identities=14% Similarity=0.146 Sum_probs=89.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcccccccc-C-ceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAF-E-PKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKK 259 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 259 (1402)
.-+.|+|..|+|||+||+++++.. ...+ . .+++++.. ++..++...+... ..+ .+++.++ +
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~-~~~~~~~~v~yi~~~------~~~~~~~~~~~~~-----~~~----~~~~~~~-~ 211 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYI-LEKNPNAKVVYVTSE------KFTNDFVNALRNN-----TME----EFKEKYR-S 211 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH-HHhCCCCeEEEEEHH------HHHHHHHHHHHcC-----cHH----HHHHHHh-c
Confidence 458899999999999999999864 3333 2 23344432 3344444444211 122 2333333 3
Q ss_pred eEEEEEeCCCcCCh-hhH-HHhhcccCC-CCCCcEEEEEccchh---------hhhhcCCCcceeecccCCChhhHHHHH
Q 000594 260 KFLIVLDDVWSERY-DLW-QALKSPFMA-GAPGSRIIVTTRSMD---------VASTMGSGKNYELELKLLSDDDRWSVF 327 (1402)
Q Consensus 260 ~~LlVlDdv~~~~~-~~~-~~~~~~l~~-~~~gs~iivTtR~~~---------v~~~~~~~~~~~~~l~~L~~~~~~~lf 327 (1402)
.-+||+||+..-.. +.+ +.+...+.. ...|..||+|+.... +...+.. ...+++++.+.++-.+++
T Consensus 212 ~dlLiiDDi~~l~~~~~~~~~l~~~~n~l~~~~~~iiits~~~p~~l~~l~~~l~SRl~~--gl~v~i~~pd~~~r~~il 289 (450)
T PRK00149 212 VDVLLIDDIQFLAGKERTQEEFFHTFNALHEAGKQIVLTSDRPPKELPGLEERLRSRFEW--GLTVDIEPPDLETRIAIL 289 (450)
T ss_pred CCEEEEehhhhhcCCHHHHHHHHHHHHHHHHCCCcEEEECCCCHHHHHHHHHHHHhHhcC--CeeEEecCCCHHHHHHHH
Confidence 44899999954211 111 222221111 113456888876432 1222222 234569999999999999
Q ss_pred HHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 328 VNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 328 ~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
.+++-..+.. --+++..-|++.+.|..-.+.
T Consensus 290 ~~~~~~~~~~----l~~e~l~~ia~~~~~~~R~l~ 320 (450)
T PRK00149 290 KKKAEEEGID----LPDEVLEFIAKNITSNVRELE 320 (450)
T ss_pred HHHHHHcCCC----CCHHHHHHHHcCcCCCHHHHH
Confidence 9988532211 125678888998888776543
No 161
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=97.36 E-value=0.0036 Score=71.64 Aligned_cols=162 Identities=12% Similarity=0.034 Sum_probs=88.6
Q ss_pred cccc-chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHHHHHHHHH
Q 000594 155 AVYG-RDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 155 ~~vG-r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~~~~~~i~ 232 (1402)
.++| -+..++.+.+.+... .-.....++|+.|+||||+|+.+.+...... .+.. ....-...+.+.
T Consensus 6 ~i~~~q~~~~~~L~~~~~~~-----~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~-------~cg~C~~c~~~~ 73 (329)
T PRK08058 6 QLTALQPVVVKMLQNSIAKN-----RLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVE-------PCGTCTNCKRID 73 (329)
T ss_pred HHHhhHHHHHHHHHHHHHcC-----CCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCC-------CCCcCHHHHHHh
Confidence 3566 666777777777543 2345778999999999999999876542221 1100 000001111111
Q ss_pred HHhcC-----C-CCCcCchHHHHHHHHHH----hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hh
Q 000594 233 ESITL-----S-PCDLKDLNSVQLKLKEA----VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DV 301 (1402)
Q Consensus 233 ~~~~~-----~-~~~~~~~~~~~~~l~~~----l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v 301 (1402)
..-.. . ....-..+++.+.+... ..+++=++|+|++..-+.+....+...+-.-..++.+|++|.+. .+
T Consensus 74 ~~~hpD~~~i~~~~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~~~~a~NaLLK~LEEPp~~~~~Il~t~~~~~l 153 (329)
T PRK08058 74 SGNHPDVHLVAPDGQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKMTASAANSLLKFLEEPSGGTTAILLTENKHQI 153 (329)
T ss_pred cCCCCCEEEeccccccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhhCHHHHHHHHHHhcCCCCCceEEEEeCChHhC
Confidence 00000 0 00001122222222111 23455679999996655566677777776655677777777653 33
Q ss_pred hhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 302 ASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 302 ~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
...... ....+++++++.++..+.+.+
T Consensus 154 l~TIrS-Rc~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 154 LPTILS-RCQVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred cHHHHh-hceeeeCCCCCHHHHHHHHHH
Confidence 333222 234566999999999888764
No 162
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=97.36 E-value=0.0085 Score=62.51 Aligned_cols=183 Identities=16% Similarity=0.164 Sum_probs=105.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeC-CCCCHHHHHHHHHHHhcCCCCCcC--chHHHHHHHHHHh-
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS-HDFDVLRISKAILESITLSPCDLK--DLNSVQLKLKEAV- 256 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~~~~--~~~~~~~~l~~~l- 256 (1402)
.+++.++|.-|.|||.+++++....-+ +.++-|.+. +..+...+...++..+...+.... -.++....+....
T Consensus 51 qg~~~vtGevGsGKTv~~Ral~~s~~~---d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~ 127 (269)
T COG3267 51 QGILAVTGEVGSGKTVLRRALLASLNE---DQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVK 127 (269)
T ss_pred CceEEEEecCCCchhHHHHHHHHhcCC---CceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHH
Confidence 359999999999999999955432111 112223333 445677888888888876322111 1223333343333
Q ss_pred cCCe-EEEEEeCCCcCChhhHHHhhcccCCCCCCc---EEEEEccc---h----hhhhhcCCCcceeecccCCChhhHHH
Q 000594 257 FKKK-FLIVLDDVWSERYDLWQALKSPFMAGAPGS---RIIVTTRS---M----DVASTMGSGKNYELELKLLSDDDRWS 325 (1402)
Q Consensus 257 ~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs---~iivTtR~---~----~v~~~~~~~~~~~~~l~~L~~~~~~~ 325 (1402)
+++| ..+++||..+-..+..+.++....-...++ +|+..-.- + .+...........|++.|++.++...
T Consensus 128 ~g~r~v~l~vdEah~L~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~~t~~ 207 (269)
T COG3267 128 KGKRPVVLMVDEAHDLNDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEAETGL 207 (269)
T ss_pred hCCCCeEEeehhHhhhChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChHHHHH
Confidence 4677 999999997755555555443322111122 23332211 0 11111111122337799999999888
Q ss_pred HHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhh
Q 000594 326 VFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGL 367 (1402)
Q Consensus 326 lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 367 (1402)
++..+.-+...+.+- --.+....|..+..|.|.+|..++..
T Consensus 208 yl~~~Le~a~~~~~l-~~~~a~~~i~~~sqg~P~lin~~~~~ 248 (269)
T COG3267 208 YLRHRLEGAGLPEPL-FSDDALLLIHEASQGIPRLINNLATL 248 (269)
T ss_pred HHHHHHhccCCCccc-CChhHHHHHHHHhccchHHHHHHHHH
Confidence 888776544332221 12556678999999999998776543
No 163
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=97.31 E-value=0.0079 Score=67.50 Aligned_cols=186 Identities=14% Similarity=0.153 Sum_probs=97.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cCc-----eeEEEeCCCCCHHHHHHHHHHHh
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEP-----KAWVCVSHDFDVLRISKAILESI 235 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~-----~~wv~~~~~~~~~~~~~~i~~~~ 235 (1402)
..+.+...+..+ .-...+.++|+.|+||+++|..+++...... .++ +-|+.....+|...+... -+.-
T Consensus 12 ~~~~l~~~~~~~-----rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~-p~~~ 85 (319)
T PRK08769 12 AYDQTVAALDAG-----RLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFI-PNRT 85 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecC-CCcc
Confidence 455566666443 2235788999999999999999886542221 110 001111111111000000 0000
Q ss_pred cCCCCCcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCc
Q 000594 236 TLSPCDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGK 309 (1402)
Q Consensus 236 ~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~ 309 (1402)
+.+....-.++++. .+.+.+ .+++-++|+|++..-+...-..+...+-.-..++.+|++|.. ..+...+.+ .
T Consensus 86 ~~k~~~~I~idqIR-~l~~~~~~~p~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrS-R 163 (319)
T PRK08769 86 GDKLRTEIVIEQVR-EISQKLALTPQYGIAQVVIVDPADAINRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRS-R 163 (319)
T ss_pred cccccccccHHHHH-HHHHHHhhCcccCCcEEEEeccHhhhCHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHh-h
Confidence 00000000122222 122222 256679999999665555556666666544456766666664 444433322 2
Q ss_pred ceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHH
Q 000594 310 NYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALG 365 (1402)
Q Consensus 310 ~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~ 365 (1402)
...+.+.+++.+++.+.+.+.. .. ...+..++..++|.|+.+..+.
T Consensus 164 Cq~i~~~~~~~~~~~~~L~~~~------~~----~~~a~~~~~l~~G~p~~A~~~~ 209 (319)
T PRK08769 164 CQRLEFKLPPAHEALAWLLAQG------VS----ERAAQEALDAARGHPGLAAQWL 209 (319)
T ss_pred heEeeCCCcCHHHHHHHHHHcC------CC----hHHHHHHHHHcCCCHHHHHHHh
Confidence 3445688999999988886431 11 2335678999999998765443
No 164
>PRK10536 hypothetical protein; Provisional
Probab=97.29 E-value=0.0036 Score=66.55 Aligned_cols=133 Identities=14% Similarity=0.158 Sum_probs=74.4
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEE--e--CCC-----CCH
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVC--V--SHD-----FDV 224 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~--~--~~~-----~~~ 224 (1402)
.+.+|......+..++... .+|.+.|.+|.|||+||.++..+.+ .+.|+.++-+. + .+. -+.
T Consensus 56 ~i~p~n~~Q~~~l~al~~~--------~lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~ 127 (262)
T PRK10536 56 PILARNEAQAHYLKAIESK--------QLIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDI 127 (262)
T ss_pred cccCCCHHHHHHHHHHhcC--------CeEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCH
Confidence 4667888888888888542 3899999999999999999887543 44454333221 1 110 011
Q ss_pred HH----HHHHHHHHhcCCCCCcCchHHHHH--------HHHHHhcCCeE---EEEEeCCCcCChhhHHHhhcccCCCCCC
Q 000594 225 LR----ISKAILESITLSPCDLKDLNSVQL--------KLKEAVFKKKF---LIVLDDVWSERYDLWQALKSPFMAGAPG 289 (1402)
Q Consensus 225 ~~----~~~~i~~~~~~~~~~~~~~~~~~~--------~l~~~l~~k~~---LlVlDdv~~~~~~~~~~~~~~l~~~~~g 289 (1402)
.+ .++-+.+.+..-- .....+.... .=-.+++++.+ +||+|.+.+-+..+...+.. ..+.+
T Consensus 128 ~eK~~p~~~pi~D~L~~~~-~~~~~~~~~~~~~~~Iei~~l~ymRGrtl~~~~vIvDEaqn~~~~~~k~~lt---R~g~~ 203 (262)
T PRK10536 128 AEKFAPYFRPVYDVLVRRL-GASFMQYCLRPEIGKVEIAPFAYMRGRTFENAVVILDEAQNVTAAQMKMFLT---RLGEN 203 (262)
T ss_pred HHHHHHHHHHHHHHHHHHh-ChHHHHHHHHhccCcEEEecHHHhcCCcccCCEEEEechhcCCHHHHHHHHh---hcCCC
Confidence 11 1112222111100 0001111100 01235667665 99999997766555444544 44689
Q ss_pred cEEEEEccch
Q 000594 290 SRIIVTTRSM 299 (1402)
Q Consensus 290 s~iivTtR~~ 299 (1402)
|+||+|--..
T Consensus 204 sk~v~~GD~~ 213 (262)
T PRK10536 204 VTVIVNGDIT 213 (262)
T ss_pred CEEEEeCChh
Confidence 9999987543
No 165
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=97.25 E-value=0.0035 Score=81.44 Aligned_cols=158 Identities=13% Similarity=0.141 Sum_probs=82.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-----cCceeEEEeCCCCCHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~ 228 (1402)
..++||+.++.+++..|..... .-+.++|.+|+|||++|+.++.+..... ....+|.. ++..
T Consensus 173 ~~~igr~~ei~~~~~~l~r~~~------~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l-----~~~~-- 239 (852)
T TIGR03346 173 DPVIGRDEEIRRTIQVLSRRTK------NNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLAL-----DMGA-- 239 (852)
T ss_pred CcCCCcHHHHHHHHHHHhcCCC------CceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEe-----eHHH--
Confidence 3589999999999999965432 2456899999999999999887632211 12233321 1111
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHHHHHh-c-CCeEEEEEeCCCcCC-------hhhHHHhhcccCCCCCCcEEEEEccch
Q 000594 229 KAILESITLSPCDLKDLNSVQLKLKEAV-F-KKKFLIVLDDVWSER-------YDLWQALKSPFMAGAPGSRIIVTTRSM 299 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~-~k~~LlVlDdv~~~~-------~~~~~~~~~~l~~~~~gs~iivTtR~~ 299 (1402)
++.. . ....+.+.....+.+.+ + +++.+|++|++..-. ..+-..+..+....+ .-++|-+|...
T Consensus 240 --l~a~---~-~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~~~d~~~~Lk~~l~~g-~i~~IgaTt~~ 312 (852)
T TIGR03346 240 --LIAG---A-KYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEGAMDAGNMLKPALARG-ELHCIGATTLD 312 (852)
T ss_pred --Hhhc---c-hhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcchhHHHHHhchhhhcC-ceEEEEeCcHH
Confidence 1100 0 00112222222222222 2 468999999995310 011122333333222 23455555444
Q ss_pred hhhhhcCCC-----cceeecccCCChhhHHHHHHHhh
Q 000594 300 DVASTMGSG-----KNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 300 ~v~~~~~~~-----~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
+....+... ....+.++..+.++..+++....
T Consensus 313 e~r~~~~~d~al~rRf~~i~v~~p~~~~~~~iL~~~~ 349 (852)
T TIGR03346 313 EYRKYIEKDAALERRFQPVFVDEPTVEDTISILRGLK 349 (852)
T ss_pred HHHHHhhcCHHHHhcCCEEEeCCCCHHHHHHHHHHHH
Confidence 332111110 11234588889999999887654
No 166
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=97.23 E-value=0.0041 Score=62.88 Aligned_cols=121 Identities=19% Similarity=0.191 Sum_probs=72.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-------------------cCceeEEEe
Q 000594 158 GRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-------------------FEPKAWVCV 218 (1402)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-------------------f~~~~wv~~ 218 (1402)
|-++..+.+.+.+.... -...+.++|..|+||+|+|..+++...... .....|+.-
T Consensus 1 gq~~~~~~L~~~~~~~~-----l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~ 75 (162)
T PF13177_consen 1 GQEEIIELLKNLIKSGR-----LPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIIIKP 75 (162)
T ss_dssp S-HHHHHHHHHHHHCTC-------SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEEET
T ss_pred CcHHHHHHHHHHHHcCC-----cceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEEec
Confidence 45666777777776532 234788999999999999999887542211 222333322
Q ss_pred CCC---CCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEE
Q 000594 219 SHD---FDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVT 295 (1402)
Q Consensus 219 ~~~---~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivT 295 (1402)
... ..++++. ++.+.+.... ..+++=++|+||+..-..+.+..++..+-.-..++++|++
T Consensus 76 ~~~~~~i~i~~ir-~i~~~~~~~~----------------~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fiL~ 138 (162)
T PF13177_consen 76 DKKKKSIKIDQIR-EIIEFLSLSP----------------SEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFILI 138 (162)
T ss_dssp TTSSSSBSHHHHH-HHHHHCTSS-----------------TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEEEE
T ss_pred ccccchhhHHHHH-HHHHHHHHHH----------------hcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEEEE
Confidence 221 1222221 3333222211 1245668999999877778888888888776778898888
Q ss_pred ccchh
Q 000594 296 TRSMD 300 (1402)
Q Consensus 296 tR~~~ 300 (1402)
|++..
T Consensus 139 t~~~~ 143 (162)
T PF13177_consen 139 TNNPS 143 (162)
T ss_dssp ES-GG
T ss_pred ECChH
Confidence 88754
No 167
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=97.23 E-value=0.0045 Score=73.65 Aligned_cols=168 Identities=14% Similarity=0.104 Sum_probs=88.6
Q ss_pred CccccchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHHcccccc----ccCceeEEEeCCCC
Q 000594 154 PAVYGRDEDKARILDMVLEND-------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTE----AFEPKAWVCVSHDF 222 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~----~f~~~~wv~~~~~~ 222 (1402)
.++.|.+..++++.+.+...- .-+-..++-+.++|++|.|||++|+++++..... ......|+.+...
T Consensus 182 ~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~fl~v~~~- 260 (512)
T TIGR03689 182 ADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSYFLNIKGP- 260 (512)
T ss_pred HHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCceeEEeccch-
Confidence 447789999988888763210 0011234568899999999999999999864111 1123334444321
Q ss_pred CHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCC-------hhh-----HHHhhcccCCC--C
Q 000594 223 DVLRISKAILESITLSPCDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSER-------YDL-----WQALKSPFMAG--A 287 (1402)
Q Consensus 223 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~-------~~~-----~~~~~~~l~~~--~ 287 (1402)
++ +...... .......+....++. -.+++++|+||++..-- ..+ ...+...+... .
T Consensus 261 ---eL----l~kyvGe--te~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~ 331 (512)
T TIGR03689 261 ---EL----LNKYVGE--TERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESL 331 (512)
T ss_pred ---hh----cccccch--HHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccC
Confidence 11 1110000 000111222222222 23578999999995310 011 12233333221 1
Q ss_pred CCcEEEEEccchhhhhh-cCC--CcceeecccCCChhhHHHHHHHhh
Q 000594 288 PGSRIIVTTRSMDVAST-MGS--GKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 288 ~gs~iivTtR~~~v~~~-~~~--~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
.+..||.||...+..+. +.. .-...++++..+.++..++|..+.
T Consensus 332 ~~ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l 378 (512)
T TIGR03689 332 DNVIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYL 378 (512)
T ss_pred CceEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHh
Confidence 34456666655443321 111 123456799999999999998886
No 168
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.18 E-value=2.7e-05 Score=90.70 Aligned_cols=86 Identities=27% Similarity=0.365 Sum_probs=47.5
Q ss_pred hhhhccCCCcccEEEecccccccccccccccccccceeccCccccccchh-hhcCCCCcEEecCCccccccCchhhhccc
Q 000594 562 LSDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEV-ITSLFNLEILILSNCWFLLKLPSSIGNLV 640 (1402)
Q Consensus 562 ~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~-i~~L~~L~~LdLs~~~~~~~lP~~i~~L~ 640 (1402)
++..+.-++.|+.|||++|.+...- .+..+.+|+.|||++|.+..+|.. .... +|+.|.+++| -+..+- +|.+|+
T Consensus 179 mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN-~l~tL~-gie~Lk 254 (1096)
T KOG1859|consen 179 MDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNN-ALTTLR-GIENLK 254 (1096)
T ss_pred HHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhccccccchhhh-hheeeeeccc-HHHhhh-hHHhhh
Confidence 3444555556666666666665543 455566666666666666666532 2222 2666666665 333332 356666
Q ss_pred ccccccccCcc
Q 000594 641 NLHHLDIEGAY 651 (1402)
Q Consensus 641 ~L~~L~l~~~~ 651 (1402)
+|++||+++|-
T Consensus 255 sL~~LDlsyNl 265 (1096)
T KOG1859|consen 255 SLYGLDLSYNL 265 (1096)
T ss_pred hhhccchhHhh
Confidence 66666666654
No 169
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=97.15 E-value=0.00098 Score=65.40 Aligned_cols=21 Identities=48% Similarity=0.517 Sum_probs=19.4
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.|+|++|+||||+|+.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 578999999999999999986
No 170
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=97.13 E-value=0.018 Score=64.86 Aligned_cols=180 Identities=10% Similarity=0.053 Sum_probs=98.4
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-cC---c-----eeEEEeCCCCCHHHHHHHHH
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FE---P-----KAWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~---~-----~~wv~~~~~~~~~~~~~~i~ 232 (1402)
..+.+.+.+..+ .-.....++|+.|+||+++|++++....... .. | +-++.....+|...+..
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--- 81 (325)
T PRK06871 10 TYQQITQAFQQG-----LGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEP--- 81 (325)
T ss_pred HHHHHHHHHHcC-----CcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEcc---
Confidence 345566666443 2235778999999999999999886542211 10 0 00111111111110000
Q ss_pred HHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccch-hhhhhcCCCcc
Q 000594 233 ESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSM-DVASTMGSGKN 310 (1402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~-~v~~~~~~~~~ 310 (1402)
........+++.++...+.. -..+++=++|+|++..-+......+...+-.-..++.+|++|.+. .+.....+ ..
T Consensus 82 --~~~~~I~id~iR~l~~~~~~~~~~g~~KV~iI~~a~~m~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~S-RC 158 (325)
T PRK06871 82 --IDNKDIGVDQVREINEKVSQHAQQGGNKVVYIQGAERLTEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYS-RC 158 (325)
T ss_pred --ccCCCCCHHHHHHHHHHHhhccccCCceEEEEechhhhCHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHh-hc
Confidence 00000011112222222211 113566688899997766677778887776655677777777654 44433322 23
Q ss_pred eeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 311 YELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 311 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
..+.+.+++.+++.+.+..... . . ...+...+..++|.|..+
T Consensus 159 ~~~~~~~~~~~~~~~~L~~~~~---~--~----~~~~~~~~~l~~g~p~~A 200 (325)
T PRK06871 159 QTWLIHPPEEQQALDWLQAQSS---A--E----ISEILTALRINYGRPLLA 200 (325)
T ss_pred eEEeCCCCCHHHHHHHHHHHhc---c--C----hHHHHHHHHHcCCCHHHH
Confidence 4466999999999988876541 1 1 113456778899999644
No 171
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=97.12 E-value=0.015 Score=70.17 Aligned_cols=157 Identities=11% Similarity=0.094 Sum_probs=86.9
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccC-ceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.+.|+|..|.|||.|++++++.....+-. .+++++. .++..++...+... ..+ .+++.+++ -=
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yita------eef~~el~~al~~~-----~~~----~f~~~y~~-~D 379 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSS------EEFTNEFINSIRDG-----KGD----SFRRRYRE-MD 379 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH------HHHHHHHHHHHHhc-----cHH----HHHHHhhc-CC
Confidence 48999999999999999999864322112 2344442 34444444443211 112 23333332 34
Q ss_pred EEEEeCCCcCCh-hhHHH-hhcccCC-CCCCcEEEEEccch---------hhhhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 262 LIVLDDVWSERY-DLWQA-LKSPFMA-GAPGSRIIVTTRSM---------DVASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 262 LlVlDdv~~~~~-~~~~~-~~~~l~~-~~~gs~iivTtR~~---------~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
+|||||+..... +.|+. +...+.. ...|..|||||+.. .+...+... ..+++++.+.+.-.+++.+
T Consensus 380 LLlIDDIq~l~gke~tqeeLF~l~N~l~e~gk~IIITSd~~P~eL~~l~~rL~SRf~~G--Lvv~I~~PD~EtR~aIL~k 457 (617)
T PRK14086 380 ILLVDDIQFLEDKESTQEEFFHTFNTLHNANKQIVLSSDRPPKQLVTLEDRLRNRFEWG--LITDVQPPELETRIAILRK 457 (617)
T ss_pred EEEEehhccccCCHHHHHHHHHHHHHHHhcCCCEEEecCCChHhhhhccHHHHhhhhcC--ceEEcCCCCHHHHHHHHHH
Confidence 788999954211 22322 2222211 12356688888752 222233333 3345999999999999998
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
++...+-. . -.++.+-|++.+.+..-.+
T Consensus 458 ka~~r~l~-l---~~eVi~yLa~r~~rnvR~L 485 (617)
T PRK14086 458 KAVQEQLN-A---PPEVLEFIASRISRNIREL 485 (617)
T ss_pred HHHhcCCC-C---CHHHHHHHHHhccCCHHHH
Confidence 87433211 1 1566777777776654333
No 172
>PRK08116 hypothetical protein; Validated
Probab=97.11 E-value=0.0017 Score=71.64 Aligned_cols=103 Identities=26% Similarity=0.283 Sum_probs=58.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.++|..|+|||.||.++++..... -..+++++ ..+++..+........ ..... .+.+.+.+-.
T Consensus 115 ~gl~l~G~~GtGKThLa~aia~~l~~~-~~~v~~~~------~~~ll~~i~~~~~~~~--~~~~~----~~~~~l~~~d- 180 (268)
T PRK08116 115 VGLLLWGSVGTGKTYLAACIANELIEK-GVPVIFVN------FPQLLNRIKSTYKSSG--KEDEN----EIIRSLVNAD- 180 (268)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHc-CCeEEEEE------HHHHHHHHHHHHhccc--cccHH----HHHHHhcCCC-
Confidence 358899999999999999999875433 23345555 3345555544433211 11112 2333344334
Q ss_pred EEEEeCCCcCChhhHHH--hhcccCC-CCCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQA--LKSPFMA-GAPGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~--~~~~l~~-~~~gs~iivTtR~ 298 (1402)
||||||+..+....|.. +..-+.. -..|..+||||..
T Consensus 181 lLviDDlg~e~~t~~~~~~l~~iin~r~~~~~~~IiTsN~ 220 (268)
T PRK08116 181 LLILDDLGAERDTEWAREKVYNIIDSRYRKGLPTIVTTNL 220 (268)
T ss_pred EEEEecccCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996544445543 2221111 1245679999974
No 173
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.11 E-value=0.0022 Score=63.93 Aligned_cols=87 Identities=18% Similarity=0.051 Sum_probs=45.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCC-e
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKK-K 260 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k-~ 260 (1402)
..+.|+|++|+||||+|+.++....... ..++++..+........... ........ ...........+....+.. .
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~ 79 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPG-GGVIYIDGEDILEEVLDQLL-LIIVGGKK-ASGSGELRLRLALALARKLKP 79 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCC-CCEEEECCEEccccCHHHHH-hhhhhccC-CCCCHHHHHHHHHHHHHhcCC
Confidence 4789999999999999999987642222 23445544433222111111 11111111 1111222222333333333 4
Q ss_pred EEEEEeCCCcC
Q 000594 261 FLIVLDDVWSE 271 (1402)
Q Consensus 261 ~LlVlDdv~~~ 271 (1402)
.+|++|+++..
T Consensus 80 ~viiiDei~~~ 90 (148)
T smart00382 80 DVLILDEITSL 90 (148)
T ss_pred CEEEEECCccc
Confidence 99999999664
No 174
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=97.11 E-value=0.017 Score=64.78 Aligned_cols=176 Identities=13% Similarity=0.054 Sum_probs=98.5
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccC---c-----eeEEEeCCCCCHHHHHHHHHH
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFE---P-----KAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~---~-----~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
..+++.+.+... .-...+.++|+.|+||+++|+.++.......-+ | +-++.....+|...+
T Consensus 11 ~~~~l~~~~~~~-----rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i------ 79 (319)
T PRK06090 11 VWQNWKAGLDAG-----RIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVI------ 79 (319)
T ss_pred HHHHHHHHHHcC-----CcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEE------
Confidence 445566665443 234578899999999999999987654221110 0 001111111111000
Q ss_pred HhcCCC-CCcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcC
Q 000594 234 SITLSP-CDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMG 306 (1402)
Q Consensus 234 ~~~~~~-~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~ 306 (1402)
.... ...-.++++. .+.+.+ .+++=++|+|++..-+......+...+-.-..++.+|++|.+ ..+...+.
T Consensus 80 --~p~~~~~~I~vdqiR-~l~~~~~~~~~~~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~ 156 (319)
T PRK06090 80 --KPEKEGKSITVEQIR-QCNRLAQESSQLNGYRLFVIEPADAMNESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIV 156 (319)
T ss_pred --ecCcCCCcCCHHHHH-HHHHHHhhCcccCCceEEEecchhhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHH
Confidence 0000 0011122222 122222 245568899999766667778887777655566766666555 44544433
Q ss_pred CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 307 SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 307 ~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
+. ...+.+.+++.+++.+.+.... . . .+..+++.++|.|+.+..+
T Consensus 157 SR-Cq~~~~~~~~~~~~~~~L~~~~---~---~------~~~~~l~l~~G~p~~A~~~ 201 (319)
T PRK06090 157 SR-CQQWVVTPPSTAQAMQWLKGQG---I---T------VPAYALKLNMGSPLKTLAM 201 (319)
T ss_pred hc-ceeEeCCCCCHHHHHHHHHHcC---C---c------hHHHHHHHcCCCHHHHHHH
Confidence 32 3446699999999998886532 0 0 1346788999999877554
No 175
>CHL00176 ftsH cell division protein; Validated
Probab=97.09 E-value=0.0061 Score=75.29 Aligned_cols=179 Identities=17% Similarity=0.244 Sum_probs=95.2
Q ss_pred CccccchHHHHHHHH---HHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 154 PAVYGRDEDKARILD---MVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~---~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
.++.|.++.++++.+ ++..... -+....+-|.++|++|+|||++|++++... . .-|+.++.. ++
T Consensus 183 ~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~-~-----~p~i~is~s----~f 252 (638)
T CHL00176 183 RDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEA-E-----VPFFSISGS----EF 252 (638)
T ss_pred HhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHh-C-----CCeeeccHH----HH
Confidence 457888776665544 4432211 011234568999999999999999998752 1 123333311 11
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC----------ChhhHH----HhhcccCC--CCCCcE
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE----------RYDLWQ----ALKSPFMA--GAPGSR 291 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~----------~~~~~~----~~~~~l~~--~~~gs~ 291 (1402)
.... .+ .....+...+.+.....+.+|++||+..- ..+.++ .+...+.. ...+-.
T Consensus 253 ~~~~---~g------~~~~~vr~lF~~A~~~~P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~Vi 323 (638)
T CHL00176 253 VEMF---VG------VGAARVRDLFKKAKENSPCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVI 323 (638)
T ss_pred HHHh---hh------hhHHHHHHHHHHHhcCCCcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCee
Confidence 1100 00 01122333445555678899999999421 011222 22222211 234566
Q ss_pred EEEEccchhhhhh-cC-C-CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCC
Q 000594 292 IIVTTRSMDVAST-MG-S-GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKG 356 (1402)
Q Consensus 292 iivTtR~~~v~~~-~~-~-~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g 356 (1402)
||.||...+..+. +. . .-...+.++..+.++-.++++.++-... . ........+++.+.|
T Consensus 324 VIaaTN~~~~LD~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~---~--~~d~~l~~lA~~t~G 386 (638)
T CHL00176 324 VIAATNRVDILDAALLRPGRFDRQITVSLPDREGRLDILKVHARNKK---L--SPDVSLELIARRTPG 386 (638)
T ss_pred EEEecCchHhhhhhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc---c--chhHHHHHHHhcCCC
Confidence 7777766544332 11 1 1124456888888888889888773311 1 112344667777777
No 176
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.08 E-value=0.00026 Score=74.02 Aligned_cols=84 Identities=21% Similarity=0.252 Sum_probs=45.0
Q ss_pred CCCcccEEEecccccccc---cccccccccccceeccCccccccchhh-hcCCCCcEEecCCccccc-cCchhhhccccc
Q 000594 568 KCKKLRVLSLGRYLITEV---PVSIGCLKHLRYLNFSNSWIQCLPEVI-TSLFNLEILILSNCWFLL-KLPSSIGNLVNL 642 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~l---p~~i~~l~~Lr~L~Ls~~~i~~lp~~i-~~L~~L~~LdLs~~~~~~-~lP~~i~~L~~L 642 (1402)
.+..++.|||.+|.|+.. -..+.+|++|++|+|+.|.+..--.+. ..+++|++|-|.++.... ..-..+..++.+
T Consensus 69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v 148 (418)
T KOG2982|consen 69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV 148 (418)
T ss_pred HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence 455666777777766533 233456677777777766543221111 345666666666653322 122234455566
Q ss_pred ccccccCcc
Q 000594 643 HHLDIEGAY 651 (1402)
Q Consensus 643 ~~L~l~~~~ 651 (1402)
+.|.++.|+
T Consensus 149 telHmS~N~ 157 (418)
T KOG2982|consen 149 TELHMSDNS 157 (418)
T ss_pred hhhhhccch
Confidence 666665553
No 177
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.07 E-value=0.0002 Score=73.81 Aligned_cols=90 Identities=24% Similarity=0.298 Sum_probs=66.3
Q ss_pred ccCCCcccEEEecccccc-----cccccccccccccceeccCccc----cccc-------hhhhcCCCCcEEecCCcccc
Q 000594 566 LPKCKKLRVLSLGRYLIT-----EVPVSIGCLKHLRYLNFSNSWI----QCLP-------EVITSLFNLEILILSNCWFL 629 (1402)
Q Consensus 566 ~~~l~~Lr~L~L~~~~i~-----~lp~~i~~l~~Lr~L~Ls~~~i----~~lp-------~~i~~L~~L~~LdLs~~~~~ 629 (1402)
+..+..+..++||+|.|. .+...|.+-.+|++-+++.-.. .++| +.+-+.++|++.+||.|-+-
T Consensus 26 l~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg 105 (388)
T COG5238 26 LEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFG 105 (388)
T ss_pred HHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccC
Confidence 344778889999999875 3456677788899988885321 1333 45678899999999999776
Q ss_pred ccCchh----hhcccccccccccCccccccc
Q 000594 630 LKLPSS----IGNLVNLHHLDIEGAYQLCEL 656 (1402)
Q Consensus 630 ~~lP~~----i~~L~~L~~L~l~~~~~l~~l 656 (1402)
...|+. |+.-+.|.||.+++|. ++.+
T Consensus 106 ~~~~e~L~d~is~~t~l~HL~l~NnG-lGp~ 135 (388)
T COG5238 106 SEFPEELGDLISSSTDLVHLKLNNNG-LGPI 135 (388)
T ss_pred cccchHHHHHHhcCCCceeEEeecCC-CCcc
Confidence 666665 5566889999999887 4433
No 178
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=97.07 E-value=0.00041 Score=86.15 Aligned_cols=108 Identities=21% Similarity=0.172 Sum_probs=78.5
Q ss_pred cccCCcceeccccccccccccccCChhhhhhhccCCCcccEEEecccccccccccccccccccceeccCccccccc--hh
Q 000594 534 DKVENLRTFLPISVEERSFYFRHISPMVLSDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLP--EV 611 (1402)
Q Consensus 534 ~~~~~Lr~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp--~~ 611 (1402)
..++.||+|...+.. +....+...+.++++|+.||+|+++++.+ ..+++|++|+.|.+.+-.+..-+ ..
T Consensus 145 ~~LPsL~sL~i~~~~--------~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L~mrnLe~e~~~~l~~ 215 (699)
T KOG3665|consen 145 TMLPSLRSLVISGRQ--------FDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVLSMRNLEFESYQDLID 215 (699)
T ss_pred hhCcccceEEecCce--------ecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHHhccCCCCCchhhHHH
Confidence 457888888765532 22333556678899999999999999888 67899999999999887766433 46
Q ss_pred hhcCCCCcEEecCCccccccCch-------hhhcccccccccccCcc
Q 000594 612 ITSLFNLEILILSNCWFLLKLPS-------SIGNLVNLHHLDIEGAY 651 (1402)
Q Consensus 612 i~~L~~L~~LdLs~~~~~~~lP~-------~i~~L~~L~~L~l~~~~ 651 (1402)
+.+|++|++||+|.... ...|. .-..|++||.||.+++.
T Consensus 216 LF~L~~L~vLDIS~~~~-~~~~~ii~qYlec~~~LpeLrfLDcSgTd 261 (699)
T KOG3665|consen 216 LFNLKKLRVLDISRDKN-NDDTKIIEQYLECGMVLPELRFLDCSGTD 261 (699)
T ss_pred HhcccCCCeeecccccc-ccchHHHHHHHHhcccCccccEEecCCcc
Confidence 88899999999997643 22221 11347788888888775
No 179
>PRK10865 protein disaggregation chaperone; Provisional
Probab=97.06 E-value=0.0053 Score=79.30 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=38.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
..++||+.++.++++.|..... .-+.++|.+|+||||+|+.+....
T Consensus 178 ~~vigr~~ei~~~i~iL~r~~~------~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 178 DPVIGRDEEIRRTIQVLQRRTK------NNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CcCCCCHHHHHHHHHHHhcCCc------CceEEECCCCCCHHHHHHHHHHHh
Confidence 3589999999999999976432 245699999999999999998764
No 180
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=97.02 E-value=0.0032 Score=73.74 Aligned_cols=160 Identities=15% Similarity=0.157 Sum_probs=87.1
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
.++.|.+..+++|.+.+.-.-. -+....+-+.++|++|.|||++|+++++. ....| +.+... .
T Consensus 183 ~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~e-l~~~f-----i~V~~s----e 252 (438)
T PTZ00361 183 ADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANE-TSATF-----LRVVGS----E 252 (438)
T ss_pred HHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHh-hCCCE-----EEEecc----h
Confidence 4578999998888877632100 01123456889999999999999999985 33333 222211 1
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-----------Chhh---HHHhhcccCC--CCCCc
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-----------RYDL---WQALKSPFMA--GAPGS 290 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~---~~~~~~~l~~--~~~gs 290 (1402)
+. ..... .....+...+.....+.+.+|+||++..- +.+. ...+...+.. ...+.
T Consensus 253 L~----~k~~G-----e~~~~vr~lF~~A~~~~P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V 323 (438)
T PTZ00361 253 LI----QKYLG-----DGPKLVRELFRVAEENAPSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDV 323 (438)
T ss_pred hh----hhhcc-----hHHHHHHHHHHHHHhCCCcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCe
Confidence 11 11100 01111222233333467889999987320 0000 1112222211 12456
Q ss_pred EEEEEccchhhhhhc-C-C-CcceeecccCCChhhHHHHHHHhhc
Q 000594 291 RIIVTTRSMDVASTM-G-S-GKNYELELKLLSDDDRWSVFVNHAF 332 (1402)
Q Consensus 291 ~iivTtR~~~v~~~~-~-~-~~~~~~~l~~L~~~~~~~lf~~~a~ 332 (1402)
+||+||...+..... - . .-.+.++++..+.++..++|..+..
T Consensus 324 ~VI~ATNr~d~LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~ 368 (438)
T PTZ00361 324 KVIMATNRIESLDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTS 368 (438)
T ss_pred EEEEecCChHHhhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHh
Confidence 788888765544332 1 1 1235577999999999999987763
No 181
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=97.01 E-value=0.0083 Score=68.59 Aligned_cols=159 Identities=20% Similarity=0.244 Sum_probs=88.4
Q ss_pred CCccccchHHHHH-HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 153 EPAVYGRDEDKAR-ILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 153 ~~~~vGr~~~~~~-l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
+.-++|-...... +........+ .....+.|+|..|.|||.|++++.+......... ..+.++ ......++
T Consensus 87 dnFv~g~~N~~A~aa~~~va~~~g---~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a-~v~y~~----se~f~~~~ 158 (408)
T COG0593 87 DNFVVGPSNRLAYAAAKAVAENPG---GAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNA-RVVYLT----SEDFTNDF 158 (408)
T ss_pred hheeeCCchHHHHHHHHHHHhccC---CcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCc-eEEecc----HHHHHHHH
Confidence 4445676554443 3333322221 2345789999999999999999998643333333 223332 23344444
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC-hhhHH----HhhcccCCCCCCcEEEEEccc--------
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER-YDLWQ----ALKSPFMAGAPGSRIIVTTRS-------- 298 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-~~~~~----~~~~~l~~~~~gs~iivTtR~-------- 298 (1402)
+..+.. .-.+.+++.. .-=++++||++--. .+.|+ .+...+.. .|-.||+|++.
T Consensus 159 v~a~~~---------~~~~~Fk~~y--~~dlllIDDiq~l~gk~~~qeefFh~FN~l~~--~~kqIvltsdr~P~~l~~~ 225 (408)
T COG0593 159 VKALRD---------NEMEKFKEKY--SLDLLLIDDIQFLAGKERTQEEFFHTFNALLE--NGKQIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHh---------hhHHHHHHhh--ccCeeeechHhHhcCChhHHHHHHHHHHHHHh--cCCEEEEEcCCCchhhccc
Confidence 444321 1123445544 33488999995411 11222 22233332 34489999864
Q ss_pred -hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCC
Q 000594 299 -MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEG 334 (1402)
Q Consensus 299 -~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~ 334 (1402)
+++...+..+ ..+++.+.+.+....++.+++...
T Consensus 226 ~~rL~SR~~~G--l~~~I~~Pd~e~r~aiL~kka~~~ 260 (408)
T COG0593 226 EDRLRSRLEWG--LVVEIEPPDDETRLAILRKKAEDR 260 (408)
T ss_pred cHHHHHHHhce--eEEeeCCCCHHHHHHHHHHHHHhc
Confidence 2334444444 335599999999999998877433
No 182
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=96.98 E-value=0.019 Score=70.70 Aligned_cols=126 Identities=20% Similarity=0.280 Sum_probs=78.5
Q ss_pred CCccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.++.+..+.+.+..... ....+..+...+|+.|||||.||++++.....+. +..+-+++|......
T Consensus 490 ~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e-~aliR~DMSEy~EkH---- 564 (786)
T COG0542 490 KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDE-QALIRIDMSEYMEKH---- 564 (786)
T ss_pred hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCC-ccceeechHHHHHHH----
Confidence 35689999999999998865332 1224567888899999999999999886432111 333344444322211
Q ss_pred HHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE-EEEEeCCCcCChhhHHHhhcccCC
Q 000594 230 AILESITLSPCDLKDLNSVQLKLKEAVFKKKF-LIVLDDVWSERYDLWQALKSPFMA 285 (1402)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~~ 285 (1402)
.+-+-++.++... .-++ ...+-+..+.++| +|.||+|....++..+-+..-|.+
T Consensus 565 sVSrLIGaPPGYV-Gyee-GG~LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlDd 619 (786)
T COG0542 565 SVSRLIGAPPGYV-GYEE-GGQLTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLDD 619 (786)
T ss_pred HHHHHhCCCCCCc-eecc-ccchhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhcC
Confidence 1222333333211 1111 2345566678888 888999977777777777777655
No 183
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=96.97 E-value=0.014 Score=75.18 Aligned_cols=52 Identities=27% Similarity=0.413 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+.+++|.+..+++|.+++............++.++|++|+|||++|+.+++.
T Consensus 319 ~~~~~G~~~~k~~i~~~~~~~~~~~~~~~~~lll~GppG~GKT~lAk~iA~~ 370 (775)
T TIGR00763 319 DEDHYGLKKVKERILEYLAVQKLRGKMKGPILCLVGPPGVGKTSLGKSIAKA 370 (775)
T ss_pred hhhcCChHHHHHHHHHHHHHHHhhcCCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 4458899999999988764321111123358999999999999999999875
No 184
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.96 E-value=4.9e-05 Score=94.13 Aligned_cols=63 Identities=30% Similarity=0.430 Sum_probs=40.0
Q ss_pred cccceecccCCCcccCCccccCCCCCCC-eeeccCCCCCC-CCCCCC-CccccccccccCCcchHHh
Q 000594 1307 TLTSIGISDFPKLERLSSKGFQYLVSLE-HLRVISCPNFT-SFPEAG-FPSSLLSLEIRGCPLLENK 1370 (1402)
Q Consensus 1307 ~L~~L~l~~c~~L~~l~~~~l~~l~~L~-~L~l~~c~~l~-~lp~~~-~~~sL~~L~i~~cp~l~~~ 1370 (1402)
.+..+.+.+|++++.+.....+ ..... .+.+.+|+.++ .+.... ...+++.|+++.|......
T Consensus 352 ~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~ 417 (482)
T KOG1947|consen 352 DLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDK 417 (482)
T ss_pred hHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccchHHHHHhccCCccceEecccCcccccc
Confidence 5667777777777777644444 44444 68888999883 332111 1233999999999765544
No 185
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.95 E-value=0.0048 Score=69.49 Aligned_cols=102 Identities=18% Similarity=0.150 Sum_probs=65.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCC-CCCHHHHHHHHHHHhcCCC
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSH-DFDVLRISKAILESITLSP 239 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~-~~~~~~~~~~i~~~~~~~~ 239 (1402)
...++++.+..-. .-.-+.|+|.+|+|||||++.+++.....+-+. ++|+.+.+ ..++.++.+.+...+....
T Consensus 119 ~~~RvID~l~PiG-----kGQR~LIvG~pGtGKTTLl~~la~~i~~~~~dv~~vv~lIgER~~EV~df~~~i~~~Vvast 193 (380)
T PRK12608 119 LSMRVVDLVAPIG-----KGQRGLIVAPPRAGKTVLLQQIAAAVAANHPEVHLMVLLIDERPEEVTDMRRSVKGEVYAST 193 (380)
T ss_pred hhHhhhhheeecC-----CCceEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEEecCCCCCHHHHHHHHhhhEEeec
Confidence 3445778776432 223568999999999999999987643334444 36766664 4578888888888777644
Q ss_pred CCcCchH-----HHHHHHHHHh--cCCeEEEEEeCC
Q 000594 240 CDLKDLN-----SVQLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 240 ~~~~~~~-----~~~~~l~~~l--~~k~~LlVlDdv 268 (1402)
.+..... .....+.+++ .+++++||+|++
T Consensus 194 ~de~~~~~~~v~~~~~~~Ae~f~~~GkdVVLvlDsl 229 (380)
T PRK12608 194 FDRPPDEHIRVAELVLERAKRLVEQGKDVVILLDSL 229 (380)
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 3222111 1111222222 489999999999
No 186
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.95 E-value=0.0079 Score=70.52 Aligned_cols=121 Identities=20% Similarity=0.152 Sum_probs=74.7
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFL 262 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 262 (1402)
++.|.|+-++||||+++.+....... .+++...+......-+.+. ...+...-..++..
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~----~iy~~~~d~~~~~~~l~d~-----------------~~~~~~~~~~~~~y 97 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEE----IIYINFDDLRLDRIELLDL-----------------LRAYIELKEREKSY 97 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcc----eEEEEecchhcchhhHHHH-----------------HHHHHHhhccCCce
Confidence 99999999999999997765542222 4444433221111111111 11111111127889
Q ss_pred EEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhhcC----CCcceeecccCCChhhHHHHH
Q 000594 263 IVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVASTMG----SGKNYELELKLLSDDDRWSVF 327 (1402)
Q Consensus 263 lVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~----~~~~~~~~l~~L~~~~~~~lf 327 (1402)
|+||.|.. ...|+.....+.+.++. +|++|+-+........ ++....+++.||+-.|...+-
T Consensus 98 ifLDEIq~--v~~W~~~lk~l~d~~~~-~v~itgsss~ll~~~~~~~L~GR~~~~~l~PlSF~Efl~~~ 163 (398)
T COG1373 98 IFLDEIQN--VPDWERALKYLYDRGNL-DVLITGSSSSLLSKEISESLAGRGKDLELYPLSFREFLKLK 163 (398)
T ss_pred EEEecccC--chhHHHHHHHHHccccc-eEEEECCchhhhccchhhhcCCCceeEEECCCCHHHHHhhc
Confidence 99999954 47899988888887766 8999887754432211 122455679999999876543
No 187
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=96.91 E-value=0.006 Score=62.91 Aligned_cols=179 Identities=18% Similarity=0.214 Sum_probs=97.2
Q ss_pred CccccchHHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKAR---ILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
+++||.++.+.+ |++.|.+++.-+.-.++-|..+|++|.|||-+|+++++.. +.-| +.+.. .++
T Consensus 121 ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~-kvp~-----l~vka----t~l--- 187 (368)
T COG1223 121 DDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEA-KVPL-----LLVKA----TEL--- 187 (368)
T ss_pred hhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhccc-CCce-----EEech----HHH---
Confidence 568999887664 6777766543333567889999999999999999999862 2211 22111 111
Q ss_pred HHHHhcCCCCCcCchHHHHHHH-HHHhcCCeEEEEEeCCCcCC--------hhhHHHhhccc----CC--CCCCcEEEEE
Q 000594 231 ILESITLSPCDLKDLNSVQLKL-KEAVFKKKFLIVLDDVWSER--------YDLWQALKSPF----MA--GAPGSRIIVT 295 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l-~~~l~~k~~LlVlDdv~~~~--------~~~~~~~~~~l----~~--~~~gs~iivT 295 (1402)
|-+.++ +-...++++ .+.-+.-++++.+|.+.-.. ..+..++..++ .. .+.|...|-.
T Consensus 188 iGehVG-------dgar~Ihely~rA~~~aPcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaa 260 (368)
T COG1223 188 IGEHVG-------DGARRIHELYERARKAAPCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAA 260 (368)
T ss_pred HHHHhh-------hHHHHHHHHHHHHHhcCCeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEee
Confidence 111111 111122222 22223578899999873210 11122233332 21 3456666777
Q ss_pred ccchhhhhh-cCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 296 TRSMDVAST-MGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 296 tR~~~v~~~-~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
|...+..+. ....-.+.++.+--+++|-..++..++-.-.-+ ...-.+.++++.+|+
T Consensus 261 TN~p~~LD~aiRsRFEeEIEF~LP~~eEr~~ile~y~k~~Plp-----v~~~~~~~~~~t~g~ 318 (368)
T COG1223 261 TNRPELLDPAIRSRFEEEIEFKLPNDEERLEILEYYAKKFPLP-----VDADLRYLAAKTKGM 318 (368)
T ss_pred cCChhhcCHHHHhhhhheeeeeCCChHHHHHHHHHHHHhCCCc-----cccCHHHHHHHhCCC
Confidence 776665543 222233456666677888888888877221111 111245566666664
No 188
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=96.90 E-value=0.0061 Score=64.66 Aligned_cols=35 Identities=26% Similarity=0.386 Sum_probs=29.0
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEe
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV 218 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 218 (1402)
.++|+|..|.||||++..+... ....|+.+++++-
T Consensus 15 r~viIG~sGSGKT~li~~lL~~-~~~~f~~I~l~t~ 49 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYY-LRHKFDHIFLITP 49 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHh-hcccCCEEEEEec
Confidence 5789999999999999999875 6778877776654
No 189
>PRK08118 topology modulation protein; Reviewed
Probab=96.87 E-value=0.00056 Score=69.60 Aligned_cols=33 Identities=33% Similarity=0.618 Sum_probs=27.3
Q ss_pred EEEEEccCCChHHHHHHHHHccc-c-ccccCceeE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDK-L-TEAFEPKAW 215 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~-~-~~~f~~~~w 215 (1402)
.|.|+|++|+||||||+.+++.. . .-+||..+|
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~ 37 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFW 37 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhc
Confidence 58899999999999999999865 2 356777776
No 190
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=96.86 E-value=0.00016 Score=84.48 Aligned_cols=84 Identities=29% Similarity=0.246 Sum_probs=50.4
Q ss_pred hccCCCcccEEEeccccccccccc-ccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCch--hhhcccc
Q 000594 565 LLPKCKKLRVLSLGRYLITEVPVS-IGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPS--SIGNLVN 641 (1402)
Q Consensus 565 ~~~~l~~Lr~L~L~~~~i~~lp~~-i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~--~i~~L~~ 641 (1402)
.+..+++|+.|||+.|.+..+|.- ...+ +|..|+|++|.+++| .+|.+|++|+.||+++| .+....+ -++.|..
T Consensus 204 ~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc-~L~~L~lrnN~l~tL-~gie~LksL~~LDlsyN-ll~~hseL~pLwsLs~ 280 (1096)
T KOG1859|consen 204 NLRRLPKLKHLDLSYNCLRHVPQLSMVGC-KLQLLNLRNNALTTL-RGIENLKSLYGLDLSYN-LLSEHSELEPLWSLSS 280 (1096)
T ss_pred HHHhcccccccccccchhccccccchhhh-hheeeeecccHHHhh-hhHHhhhhhhccchhHh-hhhcchhhhHHHHHHH
Confidence 456666777777777776666532 1122 367777777776666 45667777777777776 2222111 1566666
Q ss_pred cccccccCcc
Q 000594 642 LHHLDIEGAY 651 (1402)
Q Consensus 642 L~~L~l~~~~ 651 (1402)
|+.|+|.||.
T Consensus 281 L~~L~LeGNP 290 (1096)
T KOG1859|consen 281 LIVLWLEGNP 290 (1096)
T ss_pred HHHHhhcCCc
Confidence 7777777665
No 191
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=96.85 E-value=0.013 Score=68.36 Aligned_cols=159 Identities=19% Similarity=0.198 Sum_probs=86.2
Q ss_pred CccccchHHHHHHHHHHhcC----C---CCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLEN----D---PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~----~---~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
.++.|.+..+++|.+.+... + .-+-..++-+.++|++|.|||++|+++++. ....| +.+.. ..
T Consensus 145 ~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~-l~~~f-----i~i~~----s~ 214 (398)
T PTZ00454 145 SDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHH-TTATF-----IRVVG----SE 214 (398)
T ss_pred HHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-cCCCE-----EEEeh----HH
Confidence 45789988888887765311 0 001134567889999999999999999875 22222 22211 11
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-----------Chh---hHHHhhcccCC--CCCCc
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-----------RYD---LWQALKSPFMA--GAPGS 290 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~---~~~~~~~~l~~--~~~gs 290 (1402)
+ ...... .....+...+.......+.+|++|++..- +.. .+..+...+.. ...+.
T Consensus 215 l----~~k~~g-----e~~~~lr~lf~~A~~~~P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v 285 (398)
T PTZ00454 215 F----VQKYLG-----EGPRMVRDVFRLARENAPSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNV 285 (398)
T ss_pred H----HHHhcc-----hhHHHHHHHHHHHHhcCCeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCE
Confidence 1 111100 01112222333334567899999997421 000 11222222221 22456
Q ss_pred EEEEEccchhhhhh-c-CC-CcceeecccCCChhhHHHHHHHhh
Q 000594 291 RIIVTTRSMDVAST-M-GS-GKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 291 ~iivTtR~~~v~~~-~-~~-~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
.||+||...+..+. + .. .-.+.++++..+.++..++|..+.
T Consensus 286 ~VI~aTN~~d~LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~ 329 (398)
T PTZ00454 286 KVIMATNRADTLDPALLRPGRLDRKIEFPLPDRRQKRLIFQTIT 329 (398)
T ss_pred EEEEecCCchhCCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHH
Confidence 78888876554332 1 11 123456788888888888887665
No 192
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=96.84 E-value=0.037 Score=63.12 Aligned_cols=182 Identities=13% Similarity=0.071 Sum_probs=98.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc-c---Cce-----eEEEeCCCCCHHHHHHHHH
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-F---EPK-----AWVCVSHDFDVLRISKAIL 232 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f---~~~-----~wv~~~~~~~~~~~~~~i~ 232 (1402)
.-+++.+.+..+ .-...+.+.|+.|+||+|+|.+++......+ - .|. .++.....+|...+.-
T Consensus 10 ~~~~l~~~~~~~-----rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p--- 81 (334)
T PRK07993 10 DYEQLVGSYQAG-----RGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTP--- 81 (334)
T ss_pred HHHHHHHHHHcC-----CcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEec---
Confidence 445666666543 2345788999999999999999876542211 1 010 1111111122111000
Q ss_pred HHhcCCCCCcCchHHHHHHHHH-HhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCcc
Q 000594 233 ESITLSPCDLKDLNSVQLKLKE-AVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGKN 310 (1402)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~l~~-~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~ 310 (1402)
.-+......+.+.++.+.+.. -..+++=++|+|++..-+......+...+-.-..++.+|++|.+ ..+.....+. .
T Consensus 82 -~~~~~~I~idqiR~l~~~~~~~~~~g~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSR-C 159 (334)
T PRK07993 82 -EKGKSSLGVDAVREVTEKLYEHARLGGAKVVWLPDAALLTDAAANALLKTLEEPPENTWFFLACREPARLLATLRSR-C 159 (334)
T ss_pred -ccccccCCHHHHHHHHHHHhhccccCCceEEEEcchHhhCHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhc-c
Confidence 000000011112222222211 11356778999999666666777777777655566776666665 4454443322 2
Q ss_pred eeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHH
Q 000594 311 YELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAAR 362 (1402)
Q Consensus 311 ~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~ 362 (1402)
..+.+.+++.+++.+.+.+.. + .+ .+.+..++..++|.|..+.
T Consensus 160 q~~~~~~~~~~~~~~~L~~~~-~-----~~---~~~a~~~~~la~G~~~~Al 202 (334)
T PRK07993 160 RLHYLAPPPEQYALTWLSREV-T-----MS---QDALLAALRLSAGAPGAAL 202 (334)
T ss_pred ccccCCCCCHHHHHHHHHHcc-C-----CC---HHHHHHHHHHcCCCHHHHH
Confidence 335589999999988776432 1 11 2336678999999996543
No 193
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=96.83 E-value=0.032 Score=71.56 Aligned_cols=121 Identities=18% Similarity=0.242 Sum_probs=70.4
Q ss_pred CCccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.++... +...+.++.+...+...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l----~~~~~~~d~se~~~~~~--- 525 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEAL----GVHLERFDMSEYMEKHT--- 525 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHh----cCCeEEEeCchhhhccc---
Confidence 34588999999988888764211 111234578899999999999999998642 22334555544222111
Q ss_pred HHHHHhcCCCC--CcCchHHHHHHHHHHhcCC-eEEEEEeCCCcCChhhHHHhhcccCC
Q 000594 230 AILESITLSPC--DLKDLNSVQLKLKEAVFKK-KFLIVLDDVWSERYDLWQALKSPFMA 285 (1402)
Q Consensus 230 ~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~k-~~LlVlDdv~~~~~~~~~~~~~~l~~ 285 (1402)
+...++..+. ...... .+.+.++.+ .-+++||++.....+.++.+...+..
T Consensus 526 -~~~lig~~~gyvg~~~~~----~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~ld~ 579 (731)
T TIGR02639 526 -VSRLIGAPPGYVGFEQGG----LLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVMDY 579 (731)
T ss_pred -HHHHhcCCCCCcccchhh----HHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhhcc
Confidence 1112222211 111112 233333333 45999999987777777777766543
No 194
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=96.82 E-value=0.024 Score=64.27 Aligned_cols=94 Identities=16% Similarity=0.185 Sum_probs=62.6
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCC
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRD 336 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~ 336 (1402)
+++=++|+|++..-+...+..+...+-.-.+++.+|++|.+ ..+...+.+ ....+.+.+++.++..+.+.... .
T Consensus 131 ~~~kV~iI~~ae~m~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~LLpTI~S-Rcq~i~~~~~~~~~~~~~L~~~~---~- 205 (342)
T PRK06964 131 GGARVVVLYPAEALNVAAANALLKTLEEPPPGTVFLLVSARIDRLLPTILS-RCRQFPMTVPAPEAAAAWLAAQG---V- 205 (342)
T ss_pred CCceEEEEechhhcCHHHHHHHHHHhcCCCcCcEEEEEECChhhCcHHHHh-cCEEEEecCCCHHHHHHHHHHcC---C-
Confidence 45568889999777778888888888665567766655554 444444332 23456699999999998886642 1
Q ss_pred CCCCchHHHHHHHHHHHcCCChHHHHHH
Q 000594 337 AGTHGNFESARQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 337 ~~~~~~~~~~~~~i~~~~~g~PLai~~~ 364 (1402)
. . ...++..++|.|..+..+
T Consensus 206 --~--~----~~~~l~~~~Gsp~~Al~~ 225 (342)
T PRK06964 206 --A--D----ADALLAEAGGAPLAALAL 225 (342)
T ss_pred --C--h----HHHHHHHcCCCHHHHHHH
Confidence 1 1 123577889999765444
No 195
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.00035 Score=73.15 Aligned_cols=186 Identities=13% Similarity=0.079 Sum_probs=117.6
Q ss_pred CccccccccccccccCcc--cccccccCcccccEEEEeecCcccccccccCCcccccEEeecCCCCc-CccccccCCCCC
Q 000594 1110 RLPVTLKRLDIKNCDNFK--VLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENL-KSLPKGLSNLSH 1186 (1402)
Q Consensus 1110 ~~~~~L~~L~l~~c~~l~--~l~~~~~~l~~L~~L~L~~~~~~~~~~~~~~~l~~L~~L~ls~c~~l-~~l~~~l~~l~~ 1186 (1402)
...+.+++||+.+|.... .+...+.++|.|++|+|+.|+....+-..-.+..+|+.|-|.+...- +.....+..+|.
T Consensus 68 ~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~ 147 (418)
T KOG2982|consen 68 SSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPK 147 (418)
T ss_pred HHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchh
Confidence 344578888998884332 44455678899999999998765544332256678999998773211 123344667888
Q ss_pred CCeEeeecCCCCcccCCC-----CCCCcccceeeccccccCC--CC-CCCCCCCccEEEeccCCCccccCCC-C--CCCC
Q 000594 1187 LHRISISGCHNLASLPED-----ALPSNLVGVLIENCDKLKA--PL-PTGKLSSLQQLFLKKCPGIVFFPEE-G--LSTN 1255 (1402)
Q Consensus 1187 L~~L~l~~c~~l~~l~~~-----~~~~~L~~L~l~~c~~l~~--~~-~~~~l~~L~~L~l~~c~~l~~l~~~-~--~~~~ 1255 (1402)
++.|.++. ++++.+-.. ...+.+++++...|....- .. -...+|++..+-+..||. ++...+ + -.+.
T Consensus 148 vtelHmS~-N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~Pl-K~~s~ek~se~~p~ 225 (418)
T KOG2982|consen 148 VTELHMSD-NSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPL-KTESSEKGSEPFPS 225 (418)
T ss_pred hhhhhhcc-chhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcc-cchhhcccCCCCCc
Confidence 99998887 444444322 1223566666666643211 00 014578888888888863 333222 2 2566
Q ss_pred CceeEeccCCCCccccccccCCcCccceeeecCCCCcccccc
Q 000594 1256 LTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPE 1297 (1402)
Q Consensus 1256 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~ 1297 (1402)
+-.|.++.+++-.......+..+++|+.|.++++|....+..
T Consensus 226 ~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 226 LSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred chhhhhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 777888887766444444678899999999999887776654
No 196
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=96.79 E-value=0.00079 Score=83.68 Aligned_cols=31 Identities=39% Similarity=0.642 Sum_probs=15.1
Q ss_pred cccccccccccCcccccccccCccccccccccc
Q 000594 638 NLVNLHHLDIEGAYQLCELPLGMKELKCLRTLT 670 (1402)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~lp~~i~~L~~L~~L~ 670 (1402)
+++||+.||+++++ +..+ .++++|++||+|.
T Consensus 171 sFpNL~sLDIS~Tn-I~nl-~GIS~LknLq~L~ 201 (699)
T KOG3665|consen 171 SFPNLRSLDISGTN-ISNL-SGISRLKNLQVLS 201 (699)
T ss_pred ccCccceeecCCCC-ccCc-HHHhccccHHHHh
Confidence 44455555555544 3333 4455555555554
No 197
>PRK06526 transposase; Provisional
Probab=96.78 E-value=0.002 Score=70.12 Aligned_cols=99 Identities=16% Similarity=0.141 Sum_probs=52.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.-+.|+|++|+|||+||.++.+......+. +.|+ +..+++..+..... ... ....+.+. .+.-
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~-v~f~------t~~~l~~~l~~~~~-----~~~---~~~~l~~l--~~~d 161 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHR-VLFA------TAAQWVARLAAAHH-----AGR---LQAELVKL--GRYP 161 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCc-hhhh------hHHHHHHHHHHHHh-----cCc---HHHHHHHh--ccCC
Confidence 358999999999999999998764433332 2332 23344444432211 111 12223332 2445
Q ss_pred EEEEeCCCcCChhhHH-H-hhcccCC-CCCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQ-A-LKSPFMA-GAPGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~-~-~~~~l~~-~~~gs~iivTtR~ 298 (1402)
+||+||+.......|. . +...+.. ...++ +|+||..
T Consensus 162 lLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s-~IitSn~ 200 (254)
T PRK06526 162 LLIVDEVGYIPFEPEAANLFFQLVSSRYERAS-LIVTSNK 200 (254)
T ss_pred EEEEcccccCCCCHHHHHHHHHHHHHHHhcCC-EEEEcCC
Confidence 8999999543222222 2 2222211 11344 8888875
No 198
>PRK04132 replication factor C small subunit; Provisional
Probab=96.78 E-value=0.14 Score=64.74 Aligned_cols=156 Identities=15% Similarity=0.042 Sum_probs=94.8
Q ss_pred cCCChHHHHHHHHHccccccccC-ceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeC
Q 000594 189 MGGIGKTTLAQEVYNDKLTEAFE-PKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDD 267 (1402)
Q Consensus 189 ~gGiGKTtLa~~v~~~~~~~~f~-~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDd 267 (1402)
+.|+||||+|.+++++...+.++ ..+-+++++..... ..++++..+...... -..+.-++|+|+
T Consensus 574 Ph~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid-~IR~iIk~~a~~~~~--------------~~~~~KVvIIDE 638 (846)
T PRK04132 574 PTVLHNTTAALALARELFGENWRHNFLELNASDERGIN-VIREKVKEFARTKPI--------------GGASFKIIFLDE 638 (846)
T ss_pred CCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHH-HHHHHHHHHHhcCCc--------------CCCCCEEEEEEC
Confidence 67899999999999875333332 24556666654444 333333332211000 012457999999
Q ss_pred CCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHH
Q 000594 268 VWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESA 346 (1402)
Q Consensus 268 v~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~ 346 (1402)
+..-+.+....+...+-.-...+++|++|.+ ..+.....+ ....+.+++++.++-.+.+.+.+-..+-. . -.+.
T Consensus 639 aD~Lt~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrS-RC~~i~F~~ls~~~i~~~L~~I~~~Egi~-i---~~e~ 713 (846)
T PRK04132 639 ADALTQDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQS-RCAIFRFRPLRDEDIAKRLRYIAENEGLE-L---TEEG 713 (846)
T ss_pred cccCCHHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhh-hceEEeCCCCCHHHHHHHHHHHHHhcCCC-C---CHHH
Confidence 9776666777777776654456666665554 334333322 24556799999999888877665322211 1 1457
Q ss_pred HHHHHHHcCCChHHHHHH
Q 000594 347 RQRVVEKCKGLPLAARAL 364 (1402)
Q Consensus 347 ~~~i~~~~~g~PLai~~~ 364 (1402)
...|++.++|.+-.+..+
T Consensus 714 L~~Ia~~s~GDlR~AIn~ 731 (846)
T PRK04132 714 LQAILYIAEGDMRRAINI 731 (846)
T ss_pred HHHHHHHcCCCHHHHHHH
Confidence 789999999988554433
No 199
>PRK08939 primosomal protein DnaI; Reviewed
Probab=96.73 E-value=0.0058 Score=68.58 Aligned_cols=122 Identities=18% Similarity=0.264 Sum_probs=71.8
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcC
Q 000594 158 GRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITL 237 (1402)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 237 (1402)
+|........+++..-... ...+-+.|+|..|+|||.||.++++......+. +.++++. +++.++......
T Consensus 135 ~~~~~~~~~~~fi~~~~~~--~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~-v~~~~~~------~l~~~lk~~~~~ 205 (306)
T PRK08939 135 DRLDALMAALDFLEAYPPG--EKVKGLYLYGDFGVGKSYLLAAIANELAKKGVS-STLLHFP------EFIRELKNSISD 205 (306)
T ss_pred HHHHHHHHHHHHHHHhhcc--CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCC-EEEEEHH------HHHHHHHHHHhc
Confidence 4555555556666532211 233568899999999999999999875544443 4555543 455555444321
Q ss_pred CCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHH--hhcccC-CC-CCCcEEEEEccc
Q 000594 238 SPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQA--LKSPFM-AG-APGSRIIVTTRS 298 (1402)
Q Consensus 238 ~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~--~~~~l~-~~-~~gs~iivTtR~ 298 (1402)
....+ .+.. + .+-=||||||+.-+....|.. +...+. .. ..+-.+|+||..
T Consensus 206 -----~~~~~---~l~~-l-~~~dlLiIDDiG~e~~s~~~~~~ll~~Il~~R~~~~~~ti~TSNl 260 (306)
T PRK08939 206 -----GSVKE---KIDA-V-KEAPVLMLDDIGAEQMSSWVRDEVLGVILQYRMQEELPTFFTSNF 260 (306)
T ss_pred -----CcHHH---HHHH-h-cCCCEEEEecCCCccccHHHHHHHHHHHHHHHHHCCCeEEEECCC
Confidence 11222 2222 2 355689999997766667753 444432 22 245568888863
No 200
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=96.70 E-value=0.0045 Score=73.01 Aligned_cols=189 Identities=16% Similarity=0.124 Sum_probs=108.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
+++||-+.-+..|...+....- ..--...|+-|+||||+|+-++.-....+ | .....+..-...++|..
T Consensus 16 ~evvGQe~v~~~L~nal~~~ri-----~hAYlfsG~RGvGKTt~Ari~AkalNC~~-----~-~~~ePC~~C~~Ck~I~~ 84 (515)
T COG2812 16 DDVVGQEHVVKTLSNALENGRI-----AHAYLFSGPRGVGKTTIARILAKALNCEN-----G-PTAEPCGKCISCKEINE 84 (515)
T ss_pred HHhcccHHHHHHHHHHHHhCcc-----hhhhhhcCCCCcCchhHHHHHHHHhcCCC-----C-CCCCcchhhhhhHhhhc
Confidence 4579999999999999876432 23456789999999999999876431111 1 11112222222233322
Q ss_pred H--hcC------CCCCcCchHHHHHHHHHH-hcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhh
Q 000594 234 S--ITL------SPCDLKDLNSVQLKLKEA-VFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAS 303 (1402)
Q Consensus 234 ~--~~~------~~~~~~~~~~~~~~l~~~-l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~ 303 (1402)
. +.. +....+++.++.+.+.-. .+++-=+.|+|.|+--....|..+..-+-.-..+.+.|+.|++ ..+..
T Consensus 85 g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLEEPP~hV~FIlATTe~~Kip~ 164 (515)
T COG2812 85 GSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLEEPPSHVKFILATTEPQKIPN 164 (515)
T ss_pred CCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccccCccCeEEEEecCCcCcCch
Confidence 2 000 000112222222222211 1245558899999877778888888877655566666666655 34433
Q ss_pred hcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 000594 304 TMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP 358 (1402)
Q Consensus 304 ~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 358 (1402)
..-+ ....+.++.++.++-...+...+-..+-.. ..+...-|++..+|..
T Consensus 165 TIlS-Rcq~f~fkri~~~~I~~~L~~i~~~E~I~~----e~~aL~~ia~~a~Gs~ 214 (515)
T COG2812 165 TILS-RCQRFDFKRLDLEEIAKHLAAILDKEGINI----EEDALSLIARAAEGSL 214 (515)
T ss_pred hhhh-ccccccccCCCHHHHHHHHHHHHHhcCCcc----CHHHHHHHHHHcCCCh
Confidence 3222 234566999999988888777663322211 2455566777777654
No 201
>PRK07261 topology modulation protein; Provisional
Probab=96.70 E-value=0.0039 Score=63.81 Aligned_cols=65 Identities=18% Similarity=0.295 Sum_probs=40.0
Q ss_pred EEEEEccCCChHHHHHHHHHccc--cccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCe
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDK--LTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKK 260 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~--~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 260 (1402)
.|.|+|++|+||||||+++.... ..-+.|...|-... ...+.++....+...+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~~~ 60 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQPNW---------------------QERDDDDMIADISNFLLKHD 60 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEecccc---------------------ccCCHHHHHHHHHHHHhCCC
Confidence 48899999999999999987643 12244555552111 11123444555566666666
Q ss_pred EEEEEeCCCc
Q 000594 261 FLIVLDDVWS 270 (1402)
Q Consensus 261 ~LlVlDdv~~ 270 (1402)
.|+|+...
T Consensus 61 --wIidg~~~ 68 (171)
T PRK07261 61 --WIIDGNYS 68 (171)
T ss_pred --EEEcCcch
Confidence 57788743
No 202
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=96.67 E-value=0.034 Score=67.98 Aligned_cols=180 Identities=19% Similarity=0.189 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 154 PAVYGRDEDKARILDMVL---ENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
.+++|-++.++++.+++. .... .+....+-+.++|++|.|||++|+++++.. ... ++.++. .++
T Consensus 55 ~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~-~~~-----~~~i~~----~~~ 124 (495)
T TIGR01241 55 KDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEA-GVP-----FFSISG----SDF 124 (495)
T ss_pred HHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCC-----eeeccH----HHH
Confidence 457888877666554432 2110 001233458899999999999999998752 211 233321 111
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC----------hhhHHHh----hcccC--CCCCCcE
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER----------YDLWQAL----KSPFM--AGAPGSR 291 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~----~~~l~--~~~~gs~ 291 (1402)
. ..... .....+...+.......+.+|++||+..-. .+.+... ...+. ....+-.
T Consensus 125 ~----~~~~g-----~~~~~l~~~f~~a~~~~p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~ 195 (495)
T TIGR01241 125 V----EMFVG-----VGASRVRDLFEQAKKNAPCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVI 195 (495)
T ss_pred H----HHHhc-----ccHHHHHHHHHHHHhcCCCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeE
Confidence 1 11100 011222333444445677899999983310 1112222 22221 1223455
Q ss_pred EEEEccchhhhh-hcCC--CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 292 IIVTTRSMDVAS-TMGS--GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 292 iivTtR~~~v~~-~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
||.||...+..+ .+.. .-...++++..+.++-.++|..+.-.... .. ......+++.+.|.
T Consensus 196 vI~aTn~~~~ld~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-~~----~~~l~~la~~t~G~ 259 (495)
T TIGR01241 196 VIAATNRPDVLDPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-AP----DVDLKAVARRTPGF 259 (495)
T ss_pred EEEecCChhhcCHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-Cc----chhHHHHHHhCCCC
Confidence 666776543222 1111 12244668888888888888877632211 11 11234777887774
No 203
>PRK13531 regulatory ATPase RavA; Provisional
Probab=96.65 E-value=0.0078 Score=70.12 Aligned_cols=42 Identities=24% Similarity=0.318 Sum_probs=36.2
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.++||++.++.+...+..+. -|.|.|++|+|||++|+.+...
T Consensus 21 ~i~gre~vI~lll~aalag~--------hVLL~GpPGTGKT~LAraLa~~ 62 (498)
T PRK13531 21 GLYERSHAIRLCLLAALSGE--------SVFLLGPPGIAKSLIARRLKFA 62 (498)
T ss_pred hccCcHHHHHHHHHHHccCC--------CEEEECCCChhHHHHHHHHHHH
Confidence 48999999999998887543 4789999999999999998864
No 204
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=96.63 E-value=0.0021 Score=65.95 Aligned_cols=99 Identities=22% Similarity=0.296 Sum_probs=51.4
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.-+.++|..|+|||.||.++.+..+...+ .+.|+.+ .+++..+ ..... ....++. ++ .+. +-=
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~-~v~f~~~------~~L~~~l----~~~~~-~~~~~~~---~~-~l~-~~d 110 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGY-SVLFITA------SDLLDEL----KQSRS-DGSYEEL---LK-RLK-RVD 110 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT---EEEEEH------HHHHHHH----HCCHC-CTTHCHH---HH-HHH-TSS
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCc-ceeEeec------Cceeccc----ccccc-ccchhhh---cC-ccc-ccc
Confidence 46899999999999999999986554443 3456653 3344333 22211 1122222 22 222 334
Q ss_pred EEEEeCCCcCChhhHHH--hhcccCCC-CCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQA--LKSPFMAG-APGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 298 (1402)
||||||+.......|.. +..-+... .++ .+||||..
T Consensus 111 lLilDDlG~~~~~~~~~~~l~~ii~~R~~~~-~tIiTSN~ 149 (178)
T PF01695_consen 111 LLILDDLGYEPLSEWEAELLFEIIDERYERK-PTIITSNL 149 (178)
T ss_dssp CEEEETCTSS---HHHHHCTHHHHHHHHHT--EEEEEESS
T ss_pred EecccccceeeecccccccchhhhhHhhccc-CeEeeCCC
Confidence 78899997655455542 11111111 123 58888874
No 205
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=96.62 E-value=0.011 Score=76.96 Aligned_cols=138 Identities=17% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCccccchHHHHHHHHHHhcCCCC---CCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.+..++.+.+.+...... ......++.++|+.|+|||++|+.+....... -...+.++++.-.+...+
T Consensus 564 ~~~v~GQ~~av~~v~~~i~~~~~gl~~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~-~~~~i~~d~s~~~~~~~~-- 640 (852)
T TIGR03346 564 HERVVGQDEAVEAVSDAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELAKALAEFLFDD-EDAMVRIDMSEYMEKHSV-- 640 (852)
T ss_pred hcccCCChHHHHHHHHHHHHHhccCCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCC-CCcEEEEechhhcccchH--
Confidence 346899999999999988753211 11234678899999999999999998643221 122334444432221111
Q ss_pred HHHHHhcCCCC--CcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCC-----------CCCcEEEEEc
Q 000594 230 AILESITLSPC--DLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVTT 296 (1402)
Q Consensus 230 ~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTt 296 (1402)
..-++.++. ...+...+...++. ....+|+||++.....+.+..+...+..+ ...+-||+||
T Consensus 641 --~~l~g~~~g~~g~~~~g~l~~~v~~---~p~~vlllDeieka~~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TS 715 (852)
T TIGR03346 641 --ARLIGAPPGYVGYEEGGQLTEAVRR---KPYSVVLFDEVEKAHPDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTS 715 (852)
T ss_pred --HHhcCCCCCccCcccccHHHHHHHc---CCCcEEEEeccccCCHHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeC
Confidence 111222211 11111222223322 23348999999877778888777766433 1234477777
Q ss_pred cc
Q 000594 297 RS 298 (1402)
Q Consensus 297 R~ 298 (1402)
..
T Consensus 716 n~ 717 (852)
T TIGR03346 716 NL 717 (852)
T ss_pred Cc
Confidence 63
No 206
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=96.62 E-value=0.016 Score=65.79 Aligned_cols=72 Identities=13% Similarity=0.133 Sum_probs=42.5
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh-hhhhcCCCcceeecccCCChhhHHHHHHHh
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD-VASTMGSGKNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~-v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
+++-++|+|++..-+...-..+...+.....+..+|++|.+.. +...+. .....+.+.+++.+++.+.+.+.
T Consensus 112 ~~~kV~iiEp~~~Ld~~a~naLLk~LEep~~~~~~Ilvth~~~~ll~ti~-SRc~~~~~~~~~~~~~~~~L~~~ 184 (325)
T PRK08699 112 GGLRVILIHPAESMNLQAANSLLKVLEEPPPQVVFLLVSHAADKVLPTIK-SRCRKMVLPAPSHEEALAYLRER 184 (325)
T ss_pred CCceEEEEechhhCCHHHHHHHHHHHHhCcCCCEEEEEeCChHhChHHHH-HHhhhhcCCCCCHHHHHHHHHhc
Confidence 3444556688865555555555555543334566666766643 443322 22344569999999998888653
No 207
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=96.60 E-value=0.053 Score=55.24 Aligned_cols=48 Identities=23% Similarity=0.299 Sum_probs=37.5
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLT 207 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~ 207 (1402)
.++||-++.++++.-.-.+ ++..-+.|.||+|+||||-+..+++....
T Consensus 27 ~dIVGNe~tv~rl~via~~------gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 27 QDIVGNEDTVERLSVIAKE------GNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HHhhCCHHHHHHHHHHHHc------CCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 4689999999888766544 34456889999999999988888875443
No 208
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=96.58 E-value=0.16 Score=58.11 Aligned_cols=209 Identities=15% Similarity=0.170 Sum_probs=122.5
Q ss_pred chHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHH-HHHHccccccccCceeEEEeCC---CCCHHHHHHHHHHH
Q 000594 159 RDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLA-QEVYNDKLTEAFEPKAWVCVSH---DFDVLRISKAILES 234 (1402)
Q Consensus 159 r~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~~~wv~~~~---~~~~~~~~~~i~~~ 234 (1402)
|.+..++|..||.+... ..|.|.|+-|.||+.|+ .++..+. +.+..+++.+ ..+-..+++.++.+
T Consensus 1 R~e~~~~L~~wL~e~~~------TFIvV~GPrGSGK~elV~d~~L~~r-----~~vL~IDC~~i~~ar~D~~~I~~lA~q 69 (431)
T PF10443_consen 1 RKEAIEQLKSWLNENPN------TFIVVQGPRGSGKRELVMDHVLKDR-----KNVLVIDCDQIVKARGDAAFIKNLASQ 69 (431)
T ss_pred CchHHHHHHHHHhcCCC------eEEEEECCCCCCccHHHHHHHHhCC-----CCEEEEEChHhhhccChHHHHHHHHHh
Confidence 56788999999987532 58999999999999999 6666542 1244454432 12334455555555
Q ss_pred hcCCCC-----------------------Cc-Cch-HHH-------HHHHHH-------------------Hhc---CCe
Q 000594 235 ITLSPC-----------------------DL-KDL-NSV-------QLKLKE-------------------AVF---KKK 260 (1402)
Q Consensus 235 ~~~~~~-----------------------~~-~~~-~~~-------~~~l~~-------------------~l~---~k~ 260 (1402)
+|.-+. .. ... .++ ...|++ +|. .+|
T Consensus 70 vGY~PvFsw~nSiss~IDLa~qGltGqKaGfSes~e~Ql~~IL~~t~~ALr~ial~~~~~~~~~~~l~e~~yl~~hPe~~ 149 (431)
T PF10443_consen 70 VGYFPVFSWMNSISSFIDLAVQGLTGQKAGFSESLETQLKKILQTTATALRDIALSNRKKDDKDANLKEEDYLEAHPERR 149 (431)
T ss_pred cCCCcchHHHHHHHHHHHHHHhhccccccCCCCChHHHHHHHHHHHHHHHHHHHHHhhhccccccccCchhhhhhCCccC
Confidence 543211 10 111 111 112222 010 236
Q ss_pred EEEEEeCCCcCC---------hhhHHHhhcccCCCCCCcEEEEEccchhhhh----hcCCCcceeecccCCChhhHHHHH
Q 000594 261 FLIVLDDVWSER---------YDLWQALKSPFMAGAPGSRIIVTTRSMDVAS----TMGSGKNYELELKLLSDDDRWSVF 327 (1402)
Q Consensus 261 ~LlVlDdv~~~~---------~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~----~~~~~~~~~~~l~~L~~~~~~~lf 327 (1402)
-+||+|+.-... ..+|..... ..+-.+||++|-+..... .+.......+.|...+.+.|.++.
T Consensus 150 PVVVIdnF~~k~~~~~~iy~~laeWAa~Lv----~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~yV 225 (431)
T PF10443_consen 150 PVVVIDNFLHKAEENDFIYDKLAEWAASLV----QNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQYV 225 (431)
T ss_pred CEEEEcchhccCcccchHHHHHHHHHHHHH----hcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHHHH
Confidence 789999984321 123433221 235668999887754443 444444456679999999999999
Q ss_pred HHhhcCCCCC------------CCC----chHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChh-HHHHHhh
Q 000594 328 VNHAFEGRDA------------GTH----GNFESARQRVVEKCKGLPLAARALGGLLRSKERVD-EWRTILD 382 (1402)
Q Consensus 328 ~~~a~~~~~~------------~~~----~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~-~w~~~~~ 382 (1402)
..+.-..... ... .....-....++..||==.=+..+++.++.+.+++ .-..+..
T Consensus 226 ~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~eld~~i~~LGGRltDLe~lvrRiksGe~p~~Av~~iI~ 297 (431)
T PF10443_consen 226 LSQLDEDTEDSSDSKESNEQNKNDKSAENEKDLAELDECIEPLGGRLTDLEFLVRRIKSGESPEEAVEEIIS 297 (431)
T ss_pred HHHhcccccccccccccccccccccccccccchHHHHHHHHHcCCcHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 8887432110 000 12344456678889999999999999998876543 3334433
No 209
>PRK08181 transposase; Validated
Probab=96.58 E-value=0.0079 Score=65.87 Aligned_cols=99 Identities=19% Similarity=0.153 Sum_probs=53.6
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFL 262 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 262 (1402)
-+.++|++|+|||.||.++.+...... ..+.|+.+ .+++..+..... ....... +.. + .+.=|
T Consensus 108 nlll~Gp~GtGKTHLa~Aia~~a~~~g-~~v~f~~~------~~L~~~l~~a~~-----~~~~~~~---l~~-l-~~~dL 170 (269)
T PRK08181 108 NLLLFGPPGGGKSHLAAAIGLALIENG-WRVLFTRT------TDLVQKLQVARR-----ELQLESA---IAK-L-DKFDL 170 (269)
T ss_pred eEEEEecCCCcHHHHHHHHHHHHHHcC-CceeeeeH------HHHHHHHHHHHh-----CCcHHHH---HHH-H-hcCCE
Confidence 589999999999999999987643332 23455543 344444433211 1122222 222 2 23459
Q ss_pred EEEeCCCcCChhhHH--HhhcccCCCCCCcEEEEEccc
Q 000594 263 IVLDDVWSERYDLWQ--ALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 263 lVlDdv~~~~~~~~~--~~~~~l~~~~~gs~iivTtR~ 298 (1402)
||+||+.......|. .+...+.....+..+||||..
T Consensus 171 LIIDDlg~~~~~~~~~~~Lf~lin~R~~~~s~IiTSN~ 208 (269)
T PRK08181 171 LILDDLAYVTKDQAETSVLFELISARYERRSILITANQ 208 (269)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHHHhCCCEEEEcCC
Confidence 999999543333332 222222221112358888875
No 210
>PRK06921 hypothetical protein; Provisional
Probab=96.55 E-value=0.0063 Score=67.02 Aligned_cols=37 Identities=27% Similarity=0.339 Sum_probs=27.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEe
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV 218 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~ 218 (1402)
..+.++|..|+|||.||.++++......-..+++++.
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~ 154 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPF 154 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEH
Confidence 4689999999999999999998654331234556664
No 211
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=96.55 E-value=0.0092 Score=76.86 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=76.7
Q ss_pred CCccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.+..++.+.+.+..... .......++.++|+.|+|||.+|++++.... ......+-++++.-.+. .
T Consensus 565 ~~~v~GQ~~Av~~v~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~-~~~~~~~~~dmse~~~~----~ 639 (852)
T TIGR03345 565 AERVIGQDHALEAIAERIRTARAGLEDPRKPLGVFLLVGPSGVGKTETALALAELLY-GGEQNLITINMSEFQEA----H 639 (852)
T ss_pred cCeEcChHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCCCHHHHHHHHHHHHh-CCCcceEEEeHHHhhhh----h
Confidence 45689999999999998854211 1113456889999999999999999876432 11122222222221111 1
Q ss_pred HHHHHhcCCCCCc--CchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCC-----------CCcEEEEEc
Q 000594 230 AILESITLSPCDL--KDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGA-----------PGSRIIVTT 296 (1402)
Q Consensus 230 ~i~~~~~~~~~~~--~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~-----------~gs~iivTt 296 (1402)
.+..-++.++... .....+...+++ ...-+|+||++...+.+.++.+...+..+. ..+-||+||
T Consensus 640 ~~~~l~g~~~gyvg~~~~g~L~~~v~~---~p~svvllDEieka~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TS 716 (852)
T TIGR03345 640 TVSRLKGSPPGYVGYGEGGVLTEAVRR---KPYSVVLLDEVEKAHPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTS 716 (852)
T ss_pred hhccccCCCCCcccccccchHHHHHHh---CCCcEEEEechhhcCHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeC
Confidence 1111122221111 111223333332 455699999997766777777766554432 345566666
Q ss_pred cc
Q 000594 297 RS 298 (1402)
Q Consensus 297 R~ 298 (1402)
..
T Consensus 717 Nl 718 (852)
T TIGR03345 717 NA 718 (852)
T ss_pred CC
Confidence 53
No 212
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=96.52 E-value=0.0026 Score=71.37 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=42.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.+++|.++.++++++++...........+++.++|++|.||||||+.+.+..
T Consensus 51 ~~~~G~~~~i~~lv~~l~~~a~g~~~~r~il~L~GPPGsGKStla~~La~~l 102 (361)
T smart00763 51 HDFFGMEEAIERFVNYFKSAAQGLEERKQILYLLGPVGGGKSSLVECLKRGL 102 (361)
T ss_pred hhccCcHHHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 3799999999999999976543222456899999999999999999998753
No 213
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.51 E-value=0.0075 Score=62.51 Aligned_cols=130 Identities=17% Similarity=0.170 Sum_probs=64.1
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccccCceeEEEeCC--CCC----HHH----
Q 000594 158 GRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSH--DFD----VLR---- 226 (1402)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f~~~~wv~~~~--~~~----~~~---- 226 (1402)
.+..+....++.|... .++.+.|++|.|||.||.+.+.+. ..+.|+.++++.-.- ..+ +.+
T Consensus 4 p~~~~Q~~~~~al~~~--------~~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~~~~lGflpG~~~eK 75 (205)
T PF02562_consen 4 PKNEEQKFALDALLNN--------DLVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEAGEDLGFLPGDLEEK 75 (205)
T ss_dssp --SHHHHHHHHHHHH---------SEEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--TT----SS-------
T ss_pred CCCHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCCccccccCCCCHHHH
Confidence 3455666677777632 389999999999999999988766 557788777664211 100 000
Q ss_pred ---HHHHHHHHhcCCCCCcCchHHHHHH------HHHHhcCC---eEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEE
Q 000594 227 ---ISKAILESITLSPCDLKDLNSVQLK------LKEAVFKK---KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIV 294 (1402)
Q Consensus 227 ---~~~~i~~~~~~~~~~~~~~~~~~~~------l~~~l~~k---~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iiv 294 (1402)
.+.-+.+.+..-. .....+.+.+. --.+++|+ ...||+|++.+....++..+... .+.|||||+
T Consensus 76 ~~p~~~p~~d~l~~~~-~~~~~~~~~~~~~Ie~~~~~~iRGrt~~~~~iIvDEaQN~t~~~~k~ilTR---~g~~skii~ 151 (205)
T PF02562_consen 76 MEPYLRPIYDALEELF-GKEKLEELIQNGKIEIEPLAFIRGRTFDNAFIIVDEAQNLTPEELKMILTR---IGEGSKIII 151 (205)
T ss_dssp --TTTHHHHHHHTTTS--TTCHHHHHHTTSEEEEEGGGGTT--B-SEEEEE-SGGG--HHHHHHHHTT---B-TT-EEEE
T ss_pred HHHHHHHHHHHHHHHh-ChHhHHHHhhcCeEEEEehhhhcCccccceEEEEecccCCCHHHHHHHHcc---cCCCcEEEE
Confidence 1111111111100 11112222110 01244554 46999999987777666666544 468999999
Q ss_pred Eccch
Q 000594 295 TTRSM 299 (1402)
Q Consensus 295 TtR~~ 299 (1402)
+--..
T Consensus 152 ~GD~~ 156 (205)
T PF02562_consen 152 TGDPS 156 (205)
T ss_dssp EE---
T ss_pred ecCce
Confidence 86543
No 214
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.51 E-value=0.01 Score=63.87 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=56.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.++|.+|+|||+||.++++...... ..+++++ ..+++..+-..... .....+ .+.+.+. +.=
T Consensus 100 ~~~~l~G~~GtGKThLa~aia~~l~~~g-~~v~~it------~~~l~~~l~~~~~~---~~~~~~----~~l~~l~-~~d 164 (244)
T PRK07952 100 ASFIFSGKPGTGKNHLAAAICNELLLRG-KSVLIIT------VADIMSAMKDTFSN---SETSEE----QLLNDLS-NVD 164 (244)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHhcC-CeEEEEE------HHHHHHHHHHHHhh---ccccHH----HHHHHhc-cCC
Confidence 4688999999999999999998653322 3445554 33444444433321 111112 2333344 344
Q ss_pred EEEEeCCCcCChhhHHH-hhcccCC-C-CCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQA-LKSPFMA-G-APGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~-~~~~l~~-~-~~gs~iivTtR~ 298 (1402)
+||+||+.......|+. +...+.. . ...-.+||||..
T Consensus 165 lLvIDDig~~~~s~~~~~~l~~Ii~~Ry~~~~~tiitSNl 204 (244)
T PRK07952 165 LLVIDEIGVQTESRYEKVIINQIVDRRSSSKRPTGMLTNS 204 (244)
T ss_pred EEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCCEEEeCCC
Confidence 88889996655556663 2221211 1 123447777764
No 215
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.50 E-value=0.045 Score=62.51 Aligned_cols=150 Identities=20% Similarity=0.196 Sum_probs=86.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
.....+.+.|++|+|||+||..++. ...|+.+--++-..- ++.+ +......+.......-+.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~---~S~FPFvKiiSpe~m-------------iG~s--EsaKc~~i~k~F~DAYkS 597 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIAL---SSDFPFVKIISPEDM-------------IGLS--ESAKCAHIKKIFEDAYKS 597 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHh---hcCCCeEEEeChHHc-------------cCcc--HHHHHHHHHHHHHHhhcC
Confidence 5567788999999999999999885 467775543321111 1111 011112222334445566
Q ss_pred CeEEEEEeCCCcCChhhHHH------------hhc---ccCCCCCCcEEEEEccchhhhhhcCCCcc--eeecccCCCh-
Q 000594 259 KKFLIVLDDVWSERYDLWQA------------LKS---PFMAGAPGSRIIVTTRSMDVASTMGSGKN--YELELKLLSD- 320 (1402)
Q Consensus 259 k~~LlVlDdv~~~~~~~~~~------------~~~---~l~~~~~gs~iivTtR~~~v~~~~~~~~~--~~~~l~~L~~- 320 (1402)
.=-.||+||+ +..-+|-. +.. ..|+.+..--|+-||....|...|+.... ..+.++.++.
T Consensus 598 ~lsiivvDdi--ErLiD~vpIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~ 675 (744)
T KOG0741|consen 598 PLSIIVVDDI--ERLLDYVPIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTG 675 (744)
T ss_pred cceEEEEcch--hhhhcccccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCch
Confidence 7779999999 43344432 222 22333333346667777888888765422 2345888877
Q ss_pred hhHHHHHHHhh-cCCCCCCCCchHHHHHHHHHHHc
Q 000594 321 DDRWSVFVNHA-FEGRDAGTHGNFESARQRVVEKC 354 (1402)
Q Consensus 321 ~~~~~lf~~~a-~~~~~~~~~~~~~~~~~~i~~~~ 354 (1402)
++..+.++..- |. +.+.+.++++.+.+|
T Consensus 676 ~~~~~vl~~~n~fs------d~~~~~~~~~~~~~~ 704 (744)
T KOG0741|consen 676 EQLLEVLEELNIFS------DDEVRAIAEQLLSKK 704 (744)
T ss_pred HHHHHHHHHccCCC------cchhHHHHHHHhccc
Confidence 67777766543 22 223455666666665
No 216
>PRK09183 transposase/IS protein; Provisional
Probab=96.47 E-value=0.0054 Score=67.36 Aligned_cols=100 Identities=17% Similarity=0.217 Sum_probs=51.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.|+|++|+|||+||.++.+......+ .+.++. ..++...+...... .. ....+++.+ .+.-
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~-~v~~~~------~~~l~~~l~~a~~~-----~~---~~~~~~~~~-~~~d 166 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGI-KVRFTT------AADLLLQLSTAQRQ-----GR---YKTTLQRGV-MAPR 166 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCC-eEEEEe------HHHHHHHHHHHHHC-----Cc---HHHHHHHHh-cCCC
Confidence 46889999999999999999765332222 223333 22333333222110 11 112233322 4556
Q ss_pred EEEEeCCCcCChhhHH--HhhcccCCC-CCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQ--ALKSPFMAG-APGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~--~~~~~l~~~-~~gs~iivTtR~ 298 (1402)
++|+||+.-.....+. .+...+... ..++ +||||..
T Consensus 167 lLiiDdlg~~~~~~~~~~~lf~li~~r~~~~s-~iiTsn~ 205 (259)
T PRK09183 167 LLIIDEIGYLPFSQEEANLFFQVIAKRYEKGS-MILTSNL 205 (259)
T ss_pred EEEEcccccCCCChHHHHHHHHHHHHHHhcCc-EEEecCC
Confidence 9999999653333332 222222111 2344 8888874
No 217
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=96.47 E-value=0.027 Score=65.32 Aligned_cols=124 Identities=20% Similarity=0.168 Sum_probs=75.3
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc--------------------cCcee
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA--------------------FEPKA 214 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~--------------------f~~~~ 214 (1402)
.++|-+....++..+..... .....+.++|++|+||||+|.++.+...... .+.+.
T Consensus 2 ~~~~~~~~~~~l~~~~~~~~----~~~halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d~l 77 (325)
T COG0470 2 ELVPWQEAVKRLLVQALESG----RLPHALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPDFL 77 (325)
T ss_pred CcccchhHHHHHHHHHHhcC----CCCceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCceE
Confidence 35677788888888886432 1223589999999999999999987642211 12333
Q ss_pred EEEeCCCCC---HHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcE
Q 000594 215 WVCVSHDFD---VLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSR 291 (1402)
Q Consensus 215 wv~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~ 291 (1402)
.+..++... ..+..+++.+....... .++.-++++|++..-+.+.-..+...+......+.
T Consensus 78 el~~s~~~~~~i~~~~vr~~~~~~~~~~~----------------~~~~kviiidead~mt~~A~nallk~lEep~~~~~ 141 (325)
T COG0470 78 ELNPSDLRKIDIIVEQVRELAEFLSESPL----------------EGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTR 141 (325)
T ss_pred EecccccCCCcchHHHHHHHHHHhccCCC----------------CCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeE
Confidence 333333332 22333333333221110 35678999999966555555566666655566778
Q ss_pred EEEEccc
Q 000594 292 IIVTTRS 298 (1402)
Q Consensus 292 iivTtR~ 298 (1402)
+|++|..
T Consensus 142 ~il~~n~ 148 (325)
T COG0470 142 FILITND 148 (325)
T ss_pred EEEEcCC
Confidence 8888774
No 218
>PRK10865 protein disaggregation chaperone; Provisional
Probab=96.46 E-value=0.013 Score=75.72 Aligned_cols=125 Identities=18% Similarity=0.211 Sum_probs=68.7
Q ss_pred CCccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.+..++.+...+..... .......++.++|+.|+|||++|+.+++..... -...+.+.++.-... .
T Consensus 567 ~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~Gp~G~GKT~lA~aLa~~l~~~-~~~~i~id~se~~~~-~--- 641 (857)
T PRK10865 567 HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLGPTGVGKTELCKALANFMFDS-DDAMVRIDMSEFMEK-H--- 641 (857)
T ss_pred CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEECCCCCCHHHHHHHHHHHhhcC-CCcEEEEEhHHhhhh-h---
Confidence 34689999999998888864321 111223578899999999999999988643221 122334444322111 1
Q ss_pred HHHHHhcCCCCCcCchHHHHHHHHHHhcC-CeEEEEEeCCCcCChhhHHHhhcccC
Q 000594 230 AILESITLSPCDLKDLNSVQLKLKEAVFK-KKFLIVLDDVWSERYDLWQALKSPFM 284 (1402)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~~~~~~~~~~~~~~l~ 284 (1402)
...+-++.++... ..++ ...+.+.++. ..-+|+|||+.....+.+..+...+.
T Consensus 642 ~~~~LiG~~pgy~-g~~~-~g~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~ile 695 (857)
T PRK10865 642 SVSRLVGAPPGYV-GYEE-GGYLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVLD 695 (857)
T ss_pred hHHHHhCCCCccc-ccch-hHHHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHHh
Confidence 1111122222111 1111 1122333332 33599999997666777777766554
No 219
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=96.42 E-value=0.096 Score=57.98 Aligned_cols=55 Identities=24% Similarity=0.278 Sum_probs=33.5
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 161 EDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
+-++++..++... +-|.+.|.+|+|||++|+++++. ... ...++++....+..++
T Consensus 9 ~l~~~~l~~l~~g--------~~vLL~G~~GtGKT~lA~~la~~-lg~---~~~~i~~~~~~~~~dl 63 (262)
T TIGR02640 9 RVTSRALRYLKSG--------YPVHLRGPAGTGKTTLAMHVARK-RDR---PVMLINGDAELTTSDL 63 (262)
T ss_pred HHHHHHHHHHhcC--------CeEEEEcCCCCCHHHHHHHHHHH-hCC---CEEEEeCCccCCHHHH
Confidence 3445555555432 24668999999999999998863 221 2334555554444444
No 220
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=96.39 E-value=0.019 Score=70.08 Aligned_cols=45 Identities=22% Similarity=0.336 Sum_probs=35.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|.+..++.+...+... ...-+.|+|.+|+|||++|+.+++.
T Consensus 65 ~~iiGqs~~i~~l~~al~~~------~~~~vLi~Ge~GtGKt~lAr~i~~~ 109 (531)
T TIGR02902 65 DEIIGQEEGIKALKAALCGP------NPQHVIIYGPPGVGKTAAARLVLEE 109 (531)
T ss_pred HHeeCcHHHHHHHHHHHhCC------CCceEEEECCCCCCHHHHHHHHHHH
Confidence 35899999999988876432 2235679999999999999999753
No 221
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=96.36 E-value=0.011 Score=63.35 Aligned_cols=49 Identities=12% Similarity=0.141 Sum_probs=36.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
+.-+++.|+|.+|+|||++|.+++... ...-..++|++... ++..++.+
T Consensus 10 ~~g~i~~i~G~~GsGKT~l~~~~~~~~-~~~g~~v~yi~~e~-~~~~rl~~ 58 (209)
T TIGR02237 10 ERGTITQIYGPPGSGKTNICMILAVNA-ARQGKKVVYIDTEG-LSPERFKQ 58 (209)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH-HhCCCeEEEEECCC-CCHHHHHH
Confidence 445799999999999999999987653 23346788999876 66555443
No 222
>CHL00095 clpC Clp protease ATP binding subunit
Probab=96.35 E-value=0.017 Score=74.92 Aligned_cols=137 Identities=19% Similarity=0.240 Sum_probs=78.2
Q ss_pred CCccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 153 EPAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
...++|.+..++.+.+.+..... .......++.++|+.|+|||+||+.+++..... -...+-++.+.-.+...+.
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~-~~~~~~~d~s~~~~~~~~~- 585 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGS-EDAMIRLDMSEYMEKHTVS- 585 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCC-ccceEEEEchhccccccHH-
Confidence 35689999999999888863221 111334567799999999999999998643221 1223344444322211111
Q ss_pred HHHHHhcCCCC--CcCchHHHHHHHHHHhcCCe-EEEEEeCCCcCChhhHHHhhcccCCC-----------CCCcEEEEE
Q 000594 230 AILESITLSPC--DLKDLNSVQLKLKEAVFKKK-FLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVT 295 (1402)
Q Consensus 230 ~i~~~~~~~~~--~~~~~~~~~~~l~~~l~~k~-~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivT 295 (1402)
.-++.++. ...+.. .+.+.++.++ -+++||++.....+.++.+...+-.+ ...+-||+|
T Consensus 586 ---~l~g~~~gyvg~~~~~----~l~~~~~~~p~~VvllDeieka~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i~I~T 658 (821)
T CHL00095 586 ---KLIGSPPGYVGYNEGG----QLTEAVRKKPYTVVLFDEIEKAHPDIFNLLLQILDDGRLTDSKGRTIDFKNTLIIMT 658 (821)
T ss_pred ---HhcCCCCcccCcCccc----hHHHHHHhCCCeEEEECChhhCCHHHHHHHHHHhccCceecCCCcEEecCceEEEEe
Confidence 11222211 111112 2334444454 58999999777777787777666542 134556667
Q ss_pred ccc
Q 000594 296 TRS 298 (1402)
Q Consensus 296 tR~ 298 (1402)
|..
T Consensus 659 sn~ 661 (821)
T CHL00095 659 SNL 661 (821)
T ss_pred CCc
Confidence 664
No 223
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.34 E-value=0.036 Score=62.70 Aligned_cols=90 Identities=14% Similarity=0.163 Sum_probs=50.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCC--HHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHh
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFD--VLRISKAILESITLSPCDLKDLNSVQLKLKEAV 256 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l 256 (1402)
...++|+++|++|+||||++..++.......+ .+..++.. .+. ..+-++...+.++.+-....+..++...+...-
T Consensus 239 ~~~~vI~LVGptGvGKTTTiaKLA~~L~~~Gk-kVglI~aD-t~RiaAvEQLk~yae~lgipv~v~~d~~~L~~aL~~lk 316 (436)
T PRK11889 239 KEVQTIALIGPTGVGKTTTLAKMAWQFHGKKK-TVGFITTD-HSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFK 316 (436)
T ss_pred cCCcEEEEECCCCCcHHHHHHHHHHHHHHcCC-cEEEEecC-CcchHHHHHHHHHhhhcCCcEEecCCHHHHHHHHHHHH
Confidence 34579999999999999999999865432322 23344432 232 223334444444433222334455555554432
Q ss_pred cC-CeEEEEEeCCCc
Q 000594 257 FK-KKFLIVLDDVWS 270 (1402)
Q Consensus 257 ~~-k~~LlVlDdv~~ 270 (1402)
.. +.=+|++|-...
T Consensus 317 ~~~~~DvVLIDTaGR 331 (436)
T PRK11889 317 EEARVDYILIDTAGK 331 (436)
T ss_pred hccCCCEEEEeCccc
Confidence 21 234677787643
No 224
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=96.29 E-value=0.016 Score=62.75 Aligned_cols=47 Identities=13% Similarity=0.163 Sum_probs=35.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
..-.++.|+|.+|+|||++|.+++.... ..-..++|++.. .++..++
T Consensus 21 ~~g~i~~i~G~~GsGKT~l~~~la~~~~-~~~~~v~yi~~e-~~~~~r~ 67 (225)
T PRK09361 21 ERGTITQIYGPPGSGKTNICLQLAVEAA-KNGKKVIYIDTE-GLSPERF 67 (225)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHH-HCCCeEEEEECC-CCCHHHH
Confidence 3447999999999999999999986533 334567899887 5555443
No 225
>PRK12377 putative replication protein; Provisional
Probab=96.28 E-value=0.013 Score=63.44 Aligned_cols=101 Identities=22% Similarity=0.139 Sum_probs=55.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
..+.++|.+|+|||+||.++++..... .-.++++++. +++..+-..... ..... .+.+.+ .+-=
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~-g~~v~~i~~~------~l~~~l~~~~~~----~~~~~----~~l~~l-~~~d 165 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAK-GRSVIVVTVP------DVMSRLHESYDN----GQSGE----KFLQEL-CKVD 165 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHc-CCCeEEEEHH------HHHHHHHHHHhc----cchHH----HHHHHh-cCCC
Confidence 468999999999999999999865433 3335666543 344444333211 11111 122222 4566
Q ss_pred EEEEeCCCcCChhhHHH--hhcccCCC-CCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQA--LKSPFMAG-APGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 298 (1402)
||||||+.......|.. +...+... .+.--+||||..
T Consensus 166 LLiIDDlg~~~~s~~~~~~l~~ii~~R~~~~~ptiitSNl 205 (248)
T PRK12377 166 LLVLDEIGIQRETKNEQVVLNQIIDRRTASMRSVGMLTNL 205 (248)
T ss_pred EEEEcCCCCCCCCHHHHHHHHHHHHHHHhcCCCEEEEcCC
Confidence 99999995543344542 22222111 122347888763
No 226
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=96.23 E-value=0.011 Score=75.12 Aligned_cols=52 Identities=29% Similarity=0.448 Sum_probs=39.7
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+.+.+|.++.+++|+++|............++.++|++|+||||+|+.++..
T Consensus 321 ~~~~~g~~~vK~~i~~~l~~~~~~~~~~g~~i~l~GppG~GKTtl~~~ia~~ 372 (784)
T PRK10787 321 DTDHYGLERVKDRILEYLAVQSRVNKIKGPILCLVGPPGVGKTSLGQSIAKA 372 (784)
T ss_pred hhhccCHHHHHHHHHHHHHHHHhcccCCCceEEEECCCCCCHHHHHHHHHHH
Confidence 5568999999999998886321111123358999999999999999998864
No 227
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.19 E-value=0.014 Score=60.42 Aligned_cols=36 Identities=33% Similarity=0.529 Sum_probs=27.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccccccCceeEE
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWV 216 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv 216 (1402)
+..+|.+.|+.|.||||+|+.++.. ....+...+++
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~-l~~~~~~~~~~ 41 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYER-LKLKYSNVIYL 41 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHH-HHHcCCcEEEE
Confidence 3469999999999999999999875 33444445554
No 228
>PRK04296 thymidine kinase; Provisional
Probab=96.17 E-value=0.0092 Score=62.33 Aligned_cols=113 Identities=13% Similarity=-0.010 Sum_probs=61.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCC--cCchHHHHHHHHHHhcCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCD--LKDLNSVQLKLKEAVFKK 259 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~l~~~l~~k 259 (1402)
.++.|+|..|.||||+|..++.+..... ..++.+. ..++.+.....++.+++..... .....+....+++ ..++
T Consensus 3 ~i~litG~~GsGKTT~~l~~~~~~~~~g-~~v~i~k--~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~-~~~~ 78 (190)
T PRK04296 3 KLEFIYGAMNSGKSTELLQRAYNYEERG-MKVLVFK--PAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEE-EGEK 78 (190)
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHHHcC-CeEEEEe--ccccccccCCcEecCCCCcccceEeCChHHHHHHHHh-hCCC
Confidence 4788999999999999999887642222 2223231 1112222233345555432211 2233444444444 3344
Q ss_pred eEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh
Q 000594 260 KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD 300 (1402)
Q Consensus 260 ~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 300 (1402)
.-+||+|.+.--+.++..++...+. ..|..||+|.++.+
T Consensus 79 ~dvviIDEaq~l~~~~v~~l~~~l~--~~g~~vi~tgl~~~ 117 (190)
T PRK04296 79 IDCVLIDEAQFLDKEQVVQLAEVLD--DLGIPVICYGLDTD 117 (190)
T ss_pred CCEEEEEccccCCHHHHHHHHHHHH--HcCCeEEEEecCcc
Confidence 5589999994322232333333322 36788999998743
No 229
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=96.16 E-value=0.0044 Score=61.82 Aligned_cols=100 Identities=22% Similarity=0.239 Sum_probs=70.0
Q ss_pred CcccEEEecccccccccccccccccccceeccCccccccchhhhc-CCCCcEEecCCccccccCch--hhhccccccccc
Q 000594 570 KKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITS-LFNLEILILSNCWFLLKLPS--SIGNLVNLHHLD 646 (1402)
Q Consensus 570 ~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~-L~~L~~LdLs~~~~~~~lP~--~i~~L~~L~~L~ 646 (1402)
.....+||++|.+..++ .|..+..|..|.|.+|.|+.+-+.+.. +++|+.|.|.+|+ +..+-+ .+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~~l~-~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNs-i~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKLD-NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNS-IQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhcc-cCCCccccceEEecCCcceeeccchhhhccccceEEecCcc-hhhhhhcchhccCCccceee
Confidence 35567888888887764 577888888999999999888666554 5678899998884 333322 266778888888
Q ss_pred ccCccccccccc----Ccccccccccccce
Q 000594 647 IEGAYQLCELPL----GMKELKCLRTLTNF 672 (1402)
Q Consensus 647 l~~~~~l~~lp~----~i~~L~~L~~L~~~ 672 (1402)
+-+|. ....+. -+.++++|++|+..
T Consensus 120 ll~Np-v~~k~~YR~yvl~klp~l~~LDF~ 148 (233)
T KOG1644|consen 120 LLGNP-VEHKKNYRLYVLYKLPSLRTLDFQ 148 (233)
T ss_pred ecCCc-hhcccCceeEEEEecCcceEeehh
Confidence 87776 333332 25677777777643
No 230
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=96.15 E-value=0.014 Score=57.75 Aligned_cols=117 Identities=16% Similarity=0.120 Sum_probs=62.6
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCcee--EEEeCCCCCHHHHHHHHHHHh-----cCCCC-CcCch-------HH
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA--WVCVSHDFDVLRISKAILESI-----TLSPC-DLKDL-------NS 247 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~~-----~~~~~-~~~~~-------~~ 247 (1402)
.|-|++..|.||||+|...+-+.....+...+ |+.-........+++.+ ..+ +.... ...+. .+
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l-~~v~~~~~g~~~~~~~~~~~~~~~~a~~ 82 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERL-PNIEIHRMGRGFFWTTENDEEDIAAAAE 82 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhC-CCcEEEECCCCCccCCCChHHHHHHHHH
Confidence 67888888999999999887654444443322 22222223333444333 111 00000 00111 11
Q ss_pred HHHHHHHHhcC-CeEEEEEeCCCcC---ChhhHHHhhcccCCCCCCcEEEEEccchh
Q 000594 248 VQLKLKEAVFK-KKFLIVLDDVWSE---RYDLWQALKSPFMAGAPGSRIIVTTRSMD 300 (1402)
Q Consensus 248 ~~~~l~~~l~~-k~~LlVlDdv~~~---~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 300 (1402)
.....++.+.. +-=|+|||++-.. ..-..+.+...+.....+..||+|.|+..
T Consensus 83 ~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~p 139 (159)
T cd00561 83 GWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNAP 139 (159)
T ss_pred HHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCCC
Confidence 12233444444 4459999998321 12334556666666667789999999844
No 231
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=96.08 E-value=0.02 Score=59.73 Aligned_cols=87 Identities=21% Similarity=0.168 Sum_probs=50.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeC-CCCCHHHHHHHHHHHhcCCCC---CcCchHH-HHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS-HDFDVLRISKAILESITLSPC---DLKDLNS-VQLKLKEA 255 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~~---~~~~~~~-~~~~l~~~ 255 (1402)
++|+.++|+.|+||||.+.+++...... -..+..++.. ......+-++..++.++.+-. ...+..+ ..+.+++.
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~-~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~ 79 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLK-GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKF 79 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHT-T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhc-cccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHH
Confidence 3799999999999999888887654333 3345566654 233456677888888876522 1122222 23334333
Q ss_pred hcCCeEEEEEeCC
Q 000594 256 VFKKKFLIVLDDV 268 (1402)
Q Consensus 256 l~~k~~LlVlDdv 268 (1402)
-.++.=+|++|=.
T Consensus 80 ~~~~~D~vlIDT~ 92 (196)
T PF00448_consen 80 RKKGYDLVLIDTA 92 (196)
T ss_dssp HHTTSSEEEEEE-
T ss_pred hhcCCCEEEEecC
Confidence 2233347777765
No 232
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=96.05 E-value=0.0051 Score=73.15 Aligned_cols=107 Identities=21% Similarity=0.250 Sum_probs=62.7
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
-+.+.+|-++.+++|++.|.-..-...-+-.++.+||++|+|||.|++.++.- ..+.|-. +.+.+--|..++-..-
T Consensus 321 Ld~dHYGLekVKeRIlEyLAV~~l~~~~kGpILcLVGPPGVGKTSLgkSIA~a-l~RkfvR---~sLGGvrDEAEIRGHR 396 (782)
T COG0466 321 LDKDHYGLEKVKERILEYLAVQKLTKKLKGPILCLVGPPGVGKTSLGKSIAKA-LGRKFVR---ISLGGVRDEAEIRGHR 396 (782)
T ss_pred hcccccCchhHHHHHHHHHHHHHHhccCCCcEEEEECCCCCCchhHHHHHHHH-hCCCEEE---EecCccccHHHhcccc
Confidence 35667899999999999985322111133469999999999999999999974 4555521 2333333333221111
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCC
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVW 269 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1402)
-..+| .. ...+.+.+++ .+.+.-+++||.+.
T Consensus 397 RTYIG-----am-PGrIiQ~mkk-a~~~NPv~LLDEID 427 (782)
T COG0466 397 RTYIG-----AM-PGKIIQGMKK-AGVKNPVFLLDEID 427 (782)
T ss_pred ccccc-----cC-ChHHHHHHHH-hCCcCCeEEeechh
Confidence 00111 01 1222333333 24677789999983
No 233
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=96.01 E-value=0.047 Score=70.32 Aligned_cols=182 Identities=18% Similarity=0.176 Sum_probs=91.2
Q ss_pred CccccchHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLEND-------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
.++.|.+..++++.+++...- .-+....+-+.++|++|+|||++|+++++. ....| +.+... +
T Consensus 178 ~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~-~~~~~-----i~i~~~----~ 247 (733)
T TIGR01243 178 EDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANE-AGAYF-----ISINGP----E 247 (733)
T ss_pred HHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHH-hCCeE-----EEEecH----H
Confidence 347899999999887764210 001123456889999999999999999875 22222 222211 1
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC-----------hhhHHHhhcccCCC-CCCcEEEE
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER-----------YDLWQALKSPFMAG-APGSRIIV 294 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~-----------~~~~~~~~~~l~~~-~~gs~iiv 294 (1402)
+. .... ......+...+.......+.+|++|++..-. ......+...+... ..+..++|
T Consensus 248 i~----~~~~-----g~~~~~l~~lf~~a~~~~p~il~iDEid~l~~~r~~~~~~~~~~~~~~Ll~~ld~l~~~~~vivI 318 (733)
T TIGR01243 248 IM----SKYY-----GESEERLREIFKEAEENAPSIIFIDEIDAIAPKREEVTGEVEKRVVAQLLTLMDGLKGRGRVIVI 318 (733)
T ss_pred Hh----cccc-----cHHHHHHHHHHHHHHhcCCcEEEeehhhhhcccccCCcchHHHHHHHHHHHHhhccccCCCEEEE
Confidence 11 0000 0111222333334445667899999983210 01112233222221 22333444
Q ss_pred -Eccchh-hhhhcCC--CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH
Q 000594 295 -TTRSMD-VASTMGS--GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL 359 (1402)
Q Consensus 295 -TtR~~~-v~~~~~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 359 (1402)
||...+ +...+.. .-...+.+...+.++-.+++..+.-.. .... ......+++.+.|.--
T Consensus 319 ~atn~~~~ld~al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~-~l~~----d~~l~~la~~t~G~~g 382 (733)
T TIGR01243 319 GATNRPDALDPALRRPGRFDREIVIRVPDKRARKEILKVHTRNM-PLAE----DVDLDKLAEVTHGFVG 382 (733)
T ss_pred eecCChhhcCHHHhCchhccEEEEeCCcCHHHHHHHHHHHhcCC-CCcc----ccCHHHHHHhCCCCCH
Confidence 554332 2222211 112345577778888888887554211 1111 1124567778887653
No 234
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.97 E-value=0.021 Score=62.28 Aligned_cols=80 Identities=24% Similarity=0.306 Sum_probs=48.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.-+.++|.+|+|||.||.++.++.. ..=-.+.++++. +++.++...... .....++.+.+ .+-=
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~-~~g~sv~f~~~~------el~~~Lk~~~~~--------~~~~~~l~~~l-~~~d 169 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELL-KAGISVLFITAP------DLLSKLKAAFDE--------GRLEEKLLREL-KKVD 169 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHH-HcCCeEEEEEHH------HHHHHHHHHHhc--------CchHHHHHHHh-hcCC
Confidence 4588999999999999999998755 322234555533 455555444432 11122232222 2334
Q ss_pred EEEEeCCCcCChhhHH
Q 000594 262 LIVLDDVWSERYDLWQ 277 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~ 277 (1402)
||||||+.-.....|.
T Consensus 170 lLIiDDlG~~~~~~~~ 185 (254)
T COG1484 170 LLIIDDIGYEPFSQEE 185 (254)
T ss_pred EEEEecccCccCCHHH
Confidence 8999999765555554
No 235
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=95.96 E-value=0.03 Score=60.33 Aligned_cols=44 Identities=18% Similarity=0.115 Sum_probs=32.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFD 223 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~ 223 (1402)
..-+++.|.|.+|+||||+|.+++..... .=..++|++....+.
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~~a~~~~~-~g~~v~yi~~e~~~~ 60 (218)
T cd01394 17 ERGTVTQVYGPPGTGKTNIAIQLAVETAG-QGKKVAYIDTEGLSS 60 (218)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEECCCCCH
Confidence 34579999999999999999998865322 233567887665554
No 236
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=95.94 E-value=0.073 Score=57.69 Aligned_cols=170 Identities=21% Similarity=0.177 Sum_probs=89.5
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc--ccccccCceeEEEeCCCCCH-HHHHHHH
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND--KLTEAFEPKAWVCVSHDFDV-LRISKAI 231 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~--~~~~~f~~~~wv~~~~~~~~-~~~~~~i 231 (1402)
.++|-.++..++-.++....-. +..--|.|+|+.|.|||+|...+..+ ...++| .-|...+.... .-.++.|
T Consensus 25 ~l~g~~~~~~~l~~~lkqt~~~--gEsnsviiigprgsgkT~li~~~Ls~~q~~~E~~---l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 25 NLFGVQDEQKHLSELLKQTILH--GESNSVIIIGPRGSGKTILIDTRLSDIQENGENF---LLVRLNGELQTDKIALKGI 99 (408)
T ss_pred ceeehHHHHHHHHHHHHHHHHh--cCCCceEEEccCCCCceEeeHHHHhhHHhcCCeE---EEEEECccchhhHHHHHHH
Confidence 4788888888888887543211 12235789999999999998888766 133333 33334333322 2234444
Q ss_pred HHHhc----CCCCCcCchHHHHHHHHHHhc------CCeEEEEEeCCCcCChhhHHHhhccc-----CCCCCCcEEEEEc
Q 000594 232 LESIT----LSPCDLKDLNSVQLKLKEAVF------KKKFLIVLDDVWSERYDLWQALKSPF-----MAGAPGSRIIVTT 296 (1402)
Q Consensus 232 ~~~~~----~~~~~~~~~~~~~~~l~~~l~------~k~~LlVlDdv~~~~~~~~~~~~~~l-----~~~~~gs~iivTt 296 (1402)
..|+. .......+..+....+-..|+ +-++..|+|.+.-.-.-.-..+...+ ....|-+-|-+||
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h~rQtllYnlfDisqs~r~Piciig~Tt 179 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPHSRQTLLYNLFDISQSARAPICIIGVTT 179 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccchhhHHHHHHHHHHhhcCCCeEEEEeec
Confidence 44443 222222333343444444443 34688888877321000001111111 1234567788999
Q ss_pred cchh-------hhhhcCCCcceeecccCCChhhHHHHHHHhh
Q 000594 297 RSMD-------VASTMGSGKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 297 R~~~-------v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
|-.- |-....-..+ +-++.++-++..+++++..
T Consensus 180 rld~lE~LEKRVKSRFshr~I--~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 180 RLDILELLEKRVKSRFSHRVI--FMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred cccHHHHHHHHHHhhccccee--eccCCCChHHHHHHHHHHh
Confidence 9632 2222221122 2366777788777777655
No 237
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=95.91 E-value=0.1 Score=58.24 Aligned_cols=26 Identities=19% Similarity=0.249 Sum_probs=24.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..++.++|||++|.|||.+|+++++.
T Consensus 146 k~PlgllL~GPPGcGKTllAraiA~e 171 (413)
T PLN00020 146 KVPLILGIWGGKGQGKSFQCELVFKK 171 (413)
T ss_pred CCCeEEEeeCCCCCCHHHHHHHHHHH
Confidence 56789999999999999999999986
No 238
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.91 E-value=0.023 Score=70.07 Aligned_cols=157 Identities=17% Similarity=0.217 Sum_probs=87.4
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCc-----eeEEEeCCCCCHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-----KAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-----~~wv~~~~~~~~~~~~ 228 (1402)
..++||++|+.++++.|....... -.++|.+|+|||++|.-++.+.+.+.-+. .++ +. +
T Consensus 170 DPvIGRd~EI~r~iqIL~RR~KNN------PvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~-sL----D----- 233 (786)
T COG0542 170 DPVIGRDEEIRRTIQILSRRTKNN------PVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIY-SL----D----- 233 (786)
T ss_pred CCCcChHHHHHHHHHHHhccCCCC------CeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEE-Ee----c-----
Confidence 348999999999999998654322 24689999999999988877544333221 111 00 1
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHHHHHhc-CCeEEEEEeCCCcC---------ChhhHHHhhcccCCCCCCcEEEEEccc
Q 000594 229 KAILESITLSPCDLKDLNSVQLKLKEAVF-KKKFLIVLDDVWSE---------RYDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~---------~~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
+ ..+.....-..+.++....+.+.++ .+++.|++|.++.- ..+. ..+..|....+.--.|-.||-+
T Consensus 234 --~-g~LvAGakyRGeFEeRlk~vl~ev~~~~~vILFIDEiHtiVGAG~~~G~a~DA-aNiLKPaLARGeL~~IGATT~~ 309 (786)
T COG0542 234 --L-GSLVAGAKYRGEFEERLKAVLKEVEKSKNVILFIDEIHTIVGAGATEGGAMDA-ANLLKPALARGELRCIGATTLD 309 (786)
T ss_pred --H-HHHhccccccCcHHHHHHHHHHHHhcCCCeEEEEechhhhcCCCcccccccch-hhhhHHHHhcCCeEEEEeccHH
Confidence 1 1111112223455655555555444 45899999998541 1222 2333333333333345566654
Q ss_pred hhhhhhcCC-----CcceeecccCCChhhHHHHHHHhh
Q 000594 299 MDVASTMGS-----GKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 299 ~~v~~~~~~-----~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
+-- ..+.. ..-..+.+..-+.+++..+++-..
T Consensus 310 EYR-k~iEKD~AL~RRFQ~V~V~EPs~e~ti~ILrGlk 346 (786)
T COG0542 310 EYR-KYIEKDAALERRFQKVLVDEPSVEDTIAILRGLK 346 (786)
T ss_pred HHH-HHhhhchHHHhcCceeeCCCCCHHHHHHHHHHHH
Confidence 221 11110 112334588888999888876543
No 239
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.90 E-value=0.0035 Score=38.83 Aligned_cols=20 Identities=25% Similarity=0.604 Sum_probs=10.2
Q ss_pred ccceeccCccccccchhhhc
Q 000594 595 LRYLNFSNSWIQCLPEVITS 614 (1402)
Q Consensus 595 Lr~L~Ls~~~i~~lp~~i~~ 614 (1402)
|++|+|++|.++.+|++|++
T Consensus 2 L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp ESEEEETSSEESEEGTTTTT
T ss_pred ccEEECCCCcCEeCChhhcC
Confidence 45555555555555544443
No 240
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=95.90 E-value=0.021 Score=62.52 Aligned_cols=86 Identities=27% Similarity=0.347 Sum_probs=52.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccc-cccc----cCceeEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcCchHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK-LTEA----FEPKAWVCVSHDFDVLRISKAILESITLSPC---------DLKDLNS 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~~~~ 247 (1402)
.+.=|+|.+|+|||+||.+++-.. +... =..++|++-...|+..++. +|++....... ...+.++
T Consensus 39 ~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~-~i~~~~~~~~~~~l~~I~v~~~~~~~~ 117 (256)
T PF08423_consen 39 SITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQ-QIAERFGLDPEEILDNIFVIRVFDLEE 117 (256)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHH-HHHHHTTS-HHHHHHTEEEEE-SSHHH
T ss_pred cEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHH-HHhhccccccchhhhceeeeecCCHHH
Confidence 599999999999999998886443 2211 2347899999999988765 56665433211 1122233
Q ss_pred HH---HHHHHHh-cCCeEEEEEeCC
Q 000594 248 VQ---LKLKEAV-FKKKFLIVLDDV 268 (1402)
Q Consensus 248 ~~---~~l~~~l-~~k~~LlVlDdv 268 (1402)
+. ..+...+ .++--|||+|.+
T Consensus 118 l~~~L~~l~~~l~~~~ikLIVIDSI 142 (256)
T PF08423_consen 118 LLELLEQLPKLLSESKIKLIVIDSI 142 (256)
T ss_dssp HHHHHHHHHHHHHHSCEEEEEEETS
T ss_pred HHHHHHHHHhhccccceEEEEecch
Confidence 32 2232333 245558888888
No 241
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=95.89 E-value=0.032 Score=70.41 Aligned_cols=121 Identities=15% Similarity=0.193 Sum_probs=67.9
Q ss_pred CccccchHHHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
..++|.++.++.|.+.+..... ........+.++|+.|+|||++|+.++... .. ..+.++++...... .
T Consensus 458 ~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l-~~---~~i~id~se~~~~~----~ 529 (758)
T PRK11034 458 MLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKAL-GI---ELLRFDMSEYMERH----T 529 (758)
T ss_pred ceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHh-CC---CcEEeechhhcccc----c
Confidence 3588999999999888863211 111334578999999999999999987642 21 22344444322211 1
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHhc-CCeEEEEEeCCCcCChhhHHHhhcccC
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAVF-KKKFLIVLDDVWSERYDLWQALKSPFM 284 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~l~ 284 (1402)
+.+-++.++.... .+ ....+.+.++ ...-+|+||++.....+.++.+...+.
T Consensus 530 ~~~LiG~~~gyvg-~~-~~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~ld 582 (758)
T PRK11034 530 VSRLIGAPPGYVG-FD-QGGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVMD 582 (758)
T ss_pred HHHHcCCCCCccc-cc-ccchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHHh
Confidence 1112222211110 00 0112223333 334699999997766677777766554
No 242
>PRK06696 uridine kinase; Validated
Probab=95.89 E-value=0.01 Score=64.06 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=35.7
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 158 GRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.|.+-+++|.+.+..... +.+.+|+|.|.+|.||||+|+.+...
T Consensus 2 ~~~~~~~~la~~~~~~~~---~~~~iI~I~G~sgsGKSTlA~~L~~~ 45 (223)
T PRK06696 2 SRKQLIKELAEHILTLNL---TRPLRVAIDGITASGKTTFADELAEE 45 (223)
T ss_pred cHHHHHHHHHHHHHHhCC---CCceEEEEECCCCCCHHHHHHHHHHH
Confidence 467778888888875332 55689999999999999999999865
No 243
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=95.87 E-value=0.044 Score=59.56 Aligned_cols=90 Identities=18% Similarity=0.131 Sum_probs=54.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccc-----cCceeEEEeCCCCCHHHHHHHHHHHhcCCCC---------CcCc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-----FEPKAWVCVSHDFDVLRISKAILESITLSPC---------DLKD 244 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-----f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---------~~~~ 244 (1402)
..-.++.|+|.+|.|||++|.+++....... =..++|++....++..++. ++.+....... ...+
T Consensus 17 ~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~~~~rl~-~~~~~~~~~~~~~~~~i~~~~~~~ 95 (226)
T cd01393 17 PTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAFRPERLV-QLAVRFGLDPEEVLDNIYVARPYN 95 (226)
T ss_pred cCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCCCHHHHH-HHHHHhccchhhhhccEEEEeCCC
Confidence 3447999999999999999999876432221 1457899988777765543 33333221110 1133
Q ss_pred hHHHHHHHHHHhc----CCeEEEEEeCCC
Q 000594 245 LNSVQLKLKEAVF----KKKFLIVLDDVW 269 (1402)
Q Consensus 245 ~~~~~~~l~~~l~----~k~~LlVlDdv~ 269 (1402)
.+++...+++... .+.-++|+|.+.
T Consensus 96 ~~~~~~~l~~~~~~~~~~~~~lvVIDsis 124 (226)
T cd01393 96 GEQQLEIVEELERIMSSGRVDLVVVDSVA 124 (226)
T ss_pred HHHHHHHHHHHHHHhhcCCeeEEEEcCcc
Confidence 4455444444432 355589999983
No 244
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.87 E-value=0.027 Score=67.08 Aligned_cols=82 Identities=16% Similarity=0.238 Sum_probs=55.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHh--
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAV-- 256 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-- 256 (1402)
+.-+++.++|++|+||||||.-++++. .| .++=|.+|+.-+...+-..|...+.... .+
T Consensus 324 P~kKilLL~GppGlGKTTLAHViAkqa---GY-sVvEINASDeRt~~~v~~kI~~avq~~s---------------~l~a 384 (877)
T KOG1969|consen 324 PPKKILLLCGPPGLGKTTLAHVIAKQA---GY-SVVEINASDERTAPMVKEKIENAVQNHS---------------VLDA 384 (877)
T ss_pred CccceEEeecCCCCChhHHHHHHHHhc---Cc-eEEEecccccccHHHHHHHHHHHHhhcc---------------cccc
Confidence 566899999999999999999988752 22 2455777777776666655555443221 22
Q ss_pred cCCeEEEEEeCCCcCChhhHHHh
Q 000594 257 FKKKFLIVLDDVWSERYDLWQAL 279 (1402)
Q Consensus 257 ~~k~~LlVlDdv~~~~~~~~~~~ 279 (1402)
.+++..||+|.+........+.+
T Consensus 385 dsrP~CLViDEIDGa~~~~Vdvi 407 (877)
T KOG1969|consen 385 DSRPVCLVIDEIDGAPRAAVDVI 407 (877)
T ss_pred CCCcceEEEecccCCcHHHHHHH
Confidence 27888999999965543333333
No 245
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=95.86 E-value=0.041 Score=60.17 Aligned_cols=89 Identities=19% Similarity=0.232 Sum_probs=54.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-cccc----cCceeEEEeCCCCCHHHHHHHHHHHhcCCCC------------C
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEA----FEPKAWVCVSHDFDVLRISKAILESITLSPC------------D 241 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------~ 241 (1402)
..-.++.|+|.+|.|||++|.+++... .... -..++|++..+.++..++ .++++..+.... +
T Consensus 17 ~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~~~~~~rl-~~~~~~~~~~~~~~~~~i~~~~~~~ 95 (235)
T cd01123 17 ETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEGTFRPERL-VQIAERFGLDPEEVLDNIYVARAYN 95 (235)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCCCcCHHHH-HHHHHHhccChHhHhcCEEEEecCC
Confidence 344799999999999999999997543 2221 357889998887776544 333343332111 1
Q ss_pred cCchHHHHHHHHHHhc-C-CeEEEEEeCC
Q 000594 242 LKDLNSVQLKLKEAVF-K-KKFLIVLDDV 268 (1402)
Q Consensus 242 ~~~~~~~~~~l~~~l~-~-k~~LlVlDdv 268 (1402)
..+..+....+.+.+. . +.-+||+|.+
T Consensus 96 ~~~l~~~l~~l~~~l~~~~~~~liVIDSi 124 (235)
T cd01123 96 SDHQLQLLEELEAILIESSRIKLVIVDSV 124 (235)
T ss_pred HHHHHHHHHHHHHHHhhcCCeeEEEEeCc
Confidence 1122223334444443 3 5678889988
No 246
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.2 Score=55.10 Aligned_cols=190 Identities=18% Similarity=0.185 Sum_probs=100.1
Q ss_pred ccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 155 AVYGRDEDKARILDMVLENDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
++=|-++.+++|.+...-+-. -+-..++=|.++|++|.|||-||++|+++ ....| +.|...
T Consensus 152 dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~-T~AtF-----IrvvgS------ 219 (406)
T COG1222 152 DIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQ-TDATF-----IRVVGS------ 219 (406)
T ss_pred hccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhc-cCceE-----EEeccH------
Confidence 345788888888776532110 01244567889999999999999999986 33333 443322
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHh-cCCeEEEEEeCCCcC-----------Chh---hHHHhhcccCCC--CCCc
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAV-FKKKFLIVLDDVWSE-----------RYD---LWQALKSPFMAG--APGS 290 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~~-----------~~~---~~~~~~~~l~~~--~~gs 290 (1402)
++.+..-+. -..+...+-+.- ...+..|++|.+... +.+ ..-++...+..+ ...-
T Consensus 220 --ElVqKYiGE------GaRlVRelF~lArekaPsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nv 291 (406)
T COG1222 220 --ELVQKYIGE------GARLVRELFELAREKAPSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNV 291 (406)
T ss_pred --HHHHHHhcc------chHHHHHHHHHHhhcCCeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCe
Confidence 222222111 122222333322 367889999988320 111 112333334333 2356
Q ss_pred EEEEEccchhhhhhc--CCC-cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh----HHHHH
Q 000594 291 RIIVTTRSMDVASTM--GSG-KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP----LAARA 363 (1402)
Q Consensus 291 ~iivTtR~~~v~~~~--~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P----Lai~~ 363 (1402)
|||..|.-.++.+.. ..+ -...++++.-+.+.-.++|.-|+-... ....-+++ .+++.+.|.- -|+.+
T Consensus 292 KVI~ATNR~D~LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~-l~~dvd~e----~la~~~~g~sGAdlkaict 366 (406)
T COG1222 292 KVIMATNRPDILDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMN-LADDVDLE----LLARLTEGFSGADLKAICT 366 (406)
T ss_pred EEEEecCCccccChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhcc-CccCcCHH----HHHHhcCCCchHHHHHHHH
Confidence 899988876665432 222 234566764444444556776663322 12222344 4555555543 45555
Q ss_pred HHhhhc
Q 000594 364 LGGLLR 369 (1402)
Q Consensus 364 ~~~~l~ 369 (1402)
=|++++
T Consensus 367 EAGm~A 372 (406)
T COG1222 367 EAGMFA 372 (406)
T ss_pred HHhHHH
Confidence 566653
No 247
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=95.86 E-value=0.4 Score=57.53 Aligned_cols=204 Identities=12% Similarity=0.071 Sum_probs=114.7
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc----c---cccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL----T---EAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~----~---~~f~~~~wv~~~~~~~~~~ 226 (1402)
..+-+|+.|..+|-+++...-..+ ...+.+.|.|.+|.|||+.+..|.+... + ..|+ .+.|..-.-..+.+
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~-~~g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~-yveINgm~l~~~~~ 473 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQ-GLGSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFD-YVEINGLRLASPRE 473 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCC-CCceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCcc-EEEEcceeecCHHH
Confidence 346689999999988886432221 3345999999999999999999987531 1 2232 23344445557899
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHh-----cCCeEEEEEeCCC---cCChhhHHHhhcc-cC-CCCCCcEEEEEc
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVW---SERYDLWQALKSP-FM-AGAPGSRIIVTT 296 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~---~~~~~~~~~~~~~-l~-~~~~gs~iivTt 296 (1402)
++..|...+.+.... .....+.+..+. +.+..++++|++. ...+ ++... |. +..++||++|-+
T Consensus 474 ~Y~~I~~~lsg~~~~---~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr~Q----dVlYn~fdWpt~~~sKLvvi~ 546 (767)
T KOG1514|consen 474 IYEKIWEALSGERVT---WDAALEALNFRFTVPKPKRSTTVVLIDELDILVTRSQ----DVLYNIFDWPTLKNSKLVVIA 546 (767)
T ss_pred HHHHHHHhcccCccc---HHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcccH----HHHHHHhcCCcCCCCceEEEE
Confidence 999999999765331 122223333333 2567888999872 2111 22222 22 345788866654
Q ss_pred cc--hhhhhhc-C-----CCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhh
Q 000594 297 RS--MDVASTM-G-----SGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGL 367 (1402)
Q Consensus 297 R~--~~v~~~~-~-----~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~ 367 (1402)
=. .+....+ . ......+...|.+.++-.++...+..+.. .-.....+-++++|+.-.|-.-.|+.+.-++
T Consensus 547 IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-~f~~~aielvarkVAavSGDaRraldic~RA 624 (767)
T KOG1514|consen 547 IANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-AFENKAIELVARKVAAVSGDARRALDICRRA 624 (767)
T ss_pred ecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-hcchhHHHHHHHHHHhccccHHHHHHHHHHH
Confidence 21 1111110 0 01234455778888877777766553321 1111223445555555555555555544443
No 248
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=95.86 E-value=0.0049 Score=61.02 Aligned_cols=87 Identities=25% Similarity=0.265 Sum_probs=47.3
Q ss_pred EEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEE
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFL 262 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~L 262 (1402)
|.++|.+|+|||+||+.+++.. +. ..-+.++...+..++....--. . ......+ ..+...+ .+..+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~-----~~~~~~i~~~~~~~~~dl~g~~~~~-~-~~~~~~~-~~l~~a~-----~~~~i 68 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL-----GRPVIRINCSSDTTEEDLIGSYDPS-N-GQFEFKD-GPLVRAM-----RKGGI 68 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH-----TCEEEEEE-TTTSTHHHHHCEEET--T-TTTCEEE--CCCTTH-----HEEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHh-----hcceEEEEeccccccccceeeeeec-c-ccccccc-ccccccc-----cceeE
Confidence 5789999999999999998742 22 2235667777766655332211 0 0000000 0000011 18899
Q ss_pred EEEeCCCcCChhhHHHhhccc
Q 000594 263 IVLDDVWSERYDLWQALKSPF 283 (1402)
Q Consensus 263 lVlDdv~~~~~~~~~~~~~~l 283 (1402)
+|||++.....+.++.+...+
T Consensus 69 l~lDEin~a~~~v~~~L~~ll 89 (139)
T PF07728_consen 69 LVLDEINRAPPEVLESLLSLL 89 (139)
T ss_dssp EEESSCGG--HHHHHTTHHHH
T ss_pred EEECCcccCCHHHHHHHHHHH
Confidence 999999755545555544443
No 249
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=95.85 E-value=0.0058 Score=58.78 Aligned_cols=22 Identities=45% Similarity=0.599 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
||.|.|++|+||||+|+.+.+.
T Consensus 1 vI~I~G~~gsGKST~a~~La~~ 22 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAER 22 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 6899999999999999999875
No 250
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=95.85 E-value=0.057 Score=56.71 Aligned_cols=205 Identities=15% Similarity=0.180 Sum_probs=109.9
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc-----ccccCceeEEEeCCC---------
Q 000594 156 VYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL-----TEAFEPKAWVCVSHD--------- 221 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~-----~~~f~~~~wv~~~~~--------- 221 (1402)
+.++++....+...... .+..-..++|+.|.||-|.+..+.++.. +-+-+.+.|.+-+..
T Consensus 15 l~~~~e~~~~Lksl~~~------~d~PHll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS~kklEistvsS 88 (351)
T KOG2035|consen 15 LIYHEELANLLKSLSST------GDFPHLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPSKKKLEISTVSS 88 (351)
T ss_pred cccHHHHHHHHHHhccc------CCCCeEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCCCceEEEEEecc
Confidence 56677777777666542 3345688999999999998887766531 122344455543332
Q ss_pred -C-----------CHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE-EEEEeCCCcCChhhHHHhhcccCCCCC
Q 000594 222 -F-----------DVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF-LIVLDDVWSERYDLWQALKSPFMAGAP 288 (1402)
Q Consensus 222 -~-----------~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~~~~~ 288 (1402)
+ .-+-+.+++++++..... ++ .-..+.| ++|+-.+.+-..+.-..++.-.-.-..
T Consensus 89 ~yHlEitPSDaG~~DRvViQellKevAQt~q----ie--------~~~qr~fKvvvi~ead~LT~dAQ~aLRRTMEkYs~ 156 (351)
T KOG2035|consen 89 NYHLEITPSDAGNYDRVVIQELLKEVAQTQQ----IE--------TQGQRPFKVVVINEADELTRDAQHALRRTMEKYSS 156 (351)
T ss_pred cceEEeChhhcCcccHHHHHHHHHHHHhhcc----hh--------hccccceEEEEEechHhhhHHHHHHHHHHHHHHhc
Confidence 1 122334444444432211 00 0012344 455555533333444445544444445
Q ss_pred CcEEEEEccch-hhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh-HHHHHHHh
Q 000594 289 GSRIIVTTRSM-DVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP-LAARALGG 366 (1402)
Q Consensus 289 gs~iivTtR~~-~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P-Lai~~~~~ 366 (1402)
.+|+|+...+. .+-..... ....+.+...+++|-...+++.+-.++-. -| .+++.+|+++++|.- -|+-++-+
T Consensus 157 ~~RlIl~cns~SriIepIrS-RCl~iRvpaps~eeI~~vl~~v~~kE~l~--lp--~~~l~rIa~kS~~nLRrAllmlE~ 231 (351)
T KOG2035|consen 157 NCRLILVCNSTSRIIEPIRS-RCLFIRVPAPSDEEITSVLSKVLKKEGLQ--LP--KELLKRIAEKSNRNLRRALLMLEA 231 (351)
T ss_pred CceEEEEecCcccchhHHhh-heeEEeCCCCCHHHHHHHHHHHHHHhccc--Cc--HHHHHHHHHHhcccHHHHHHHHHH
Confidence 67777654331 12122211 12345688999999999888777433211 12 789999999999864 34433332
Q ss_pred hhcCCC---------ChhHHHHHhhh
Q 000594 367 LLRSKE---------RVDEWRTILDS 383 (1402)
Q Consensus 367 ~l~~~~---------~~~~w~~~~~~ 383 (1402)
.-..+. ...+|+-+..+
T Consensus 232 ~~~~n~~~~a~~~~i~~~dWe~~i~e 257 (351)
T KOG2035|consen 232 VRVNNEPFTANSQVIPKPDWEIYIQE 257 (351)
T ss_pred HHhccccccccCCCCCCccHHHHHHH
Confidence 211111 24578877665
No 251
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.83 E-value=0.019 Score=64.21 Aligned_cols=84 Identities=21% Similarity=0.173 Sum_probs=54.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 253 (1402)
+.-+++-|+|++|+||||||.+++... ...-..++||+..+.++.. .+++++.... ...+.++....+.
T Consensus 53 p~G~iteI~Gp~GsGKTtLal~~~~~~-~~~g~~~vyId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~i~~ 126 (325)
T cd00983 53 PKGRIIEIYGPESSGKTTLALHAIAEA-QKLGGTVAFIDAEHALDPV-----YAKKLGVDLDNLLISQPDTGEQALEIAD 126 (325)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCCEEEECccccHHHH-----HHHHcCCCHHHheecCCCCHHHHHHHHH
Confidence 445799999999999999999987643 3334567899988777753 2334433211 1223444444444
Q ss_pred HHhc-CCeEEEEEeCC
Q 000594 254 EAVF-KKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (1402)
..++ +..-+||+|-|
T Consensus 127 ~li~s~~~~lIVIDSv 142 (325)
T cd00983 127 SLVRSGAVDLIVVDSV 142 (325)
T ss_pred HHHhccCCCEEEEcch
Confidence 4443 45668999997
No 252
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.83 E-value=0.029 Score=57.34 Aligned_cols=40 Identities=25% Similarity=0.300 Sum_probs=29.0
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCC
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFD 223 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~ 223 (1402)
++.|+|.+|.||||+|..+..... ..-..++|+.......
T Consensus 1 ~~~i~G~~G~GKT~l~~~i~~~~~-~~~~~v~~~~~e~~~~ 40 (165)
T cd01120 1 LILVFGPTGSGKTTLALQLALNIA-TKGGKVVYVDIEEEIE 40 (165)
T ss_pred CeeEeCCCCCCHHHHHHHHHHHHH-hcCCEEEEEECCcchH
Confidence 368999999999999999987532 2334566777665543
No 253
>cd01133 F1-ATPase_beta F1 ATP synthase beta subunit, nucleotide-binding domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The beta subunit of ATP synthase is catalytic.
Probab=95.75 E-value=0.023 Score=61.66 Aligned_cols=86 Identities=23% Similarity=0.267 Sum_probs=52.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCc-eeEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCcCchH-----H
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEP-KAWVCVSHD-FDVLRISKAILESITLSP-------CDLKDLN-----S 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~-~~wv~~~~~-~~~~~~~~~i~~~~~~~~-------~~~~~~~-----~ 247 (1402)
+-++|+|.+|+||||||+.+++. ++.+|+. ++++-+.+. ..+.++.+++.+.-.... .+..... .
T Consensus 70 Qr~~If~~~G~GKTtLa~~i~~~-i~~~~~~~~V~~~iGer~~Ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~~~~ 148 (274)
T cd01133 70 GKIGLFGGAGVGKTVLIMELINN-IAKAHGGYSVFAGVGERTREGNDLYHEMKESGVLSKTALVYGQMNEPPGARARVAL 148 (274)
T ss_pred CEEEEecCCCCChhHHHHHHHHH-HHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHH
Confidence 46899999999999999999986 4445544 445555544 345566666654321111 1111111 1
Q ss_pred HHHHHHHHh---cCCeEEEEEeCC
Q 000594 248 VQLKLKEAV---FKKKFLIVLDDV 268 (1402)
Q Consensus 248 ~~~~l~~~l---~~k~~LlVlDdv 268 (1402)
..-.+.+++ +++.+|+|+||+
T Consensus 149 ~a~~~AEyfr~~~g~~Vl~~~Dsl 172 (274)
T cd01133 149 TGLTMAEYFRDEEGQDVLLFIDNI 172 (274)
T ss_pred HHHHHHHHHHHhcCCeEEEEEeCh
Confidence 122344444 389999999998
No 254
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.74 E-value=0.0062 Score=63.70 Aligned_cols=106 Identities=24% Similarity=0.213 Sum_probs=59.4
Q ss_pred cCCCcccEEEecccccccccccccccccccceeccCc--ccc-ccchhhhcCCCCcEEecCCcccc--ccCchhhhcccc
Q 000594 567 PKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNS--WIQ-CLPEVITSLFNLEILILSNCWFL--LKLPSSIGNLVN 641 (1402)
Q Consensus 567 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~--~i~-~lp~~i~~L~~L~~LdLs~~~~~--~~lP~~i~~L~~ 641 (1402)
..+..|..|++.+..++.+ ..+-.|++|++|.++.| ++. .++-...++++|++|++++|++. ..++. +..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~p-l~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRP-LKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccch-hhhhcc
Confidence 3444555555555554443 23446677777777777 433 44444555577788888777431 22222 556667
Q ss_pred cccccccCccccccccc----CcccccccccccceecC
Q 000594 642 LHHLDIEGAYQLCELPL----GMKELKCLRTLTNFIVG 675 (1402)
Q Consensus 642 L~~L~l~~~~~l~~lp~----~i~~L~~L~~L~~~~~~ 675 (1402)
|..|++.+|. ...+-. .|.-|++|.+|+.+.+.
T Consensus 118 L~~Ldl~n~~-~~~l~dyre~vf~ll~~L~~LD~~dv~ 154 (260)
T KOG2739|consen 118 LKSLDLFNCS-VTNLDDYREKVFLLLPSLKYLDGCDVD 154 (260)
T ss_pred hhhhhcccCC-ccccccHHHHHHHHhhhhccccccccC
Confidence 7777777775 222221 14556677777655443
No 255
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=95.73 E-value=0.28 Score=56.71 Aligned_cols=43 Identities=19% Similarity=0.244 Sum_probs=32.4
Q ss_pred hHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 160 DEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 160 ~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
+.-.+.+.+.+...+. ....+|+|.|.=|.||||+.+.+.+..
T Consensus 2 ~~~a~~la~~I~~~~~---~~~~~IgL~G~WGsGKSs~l~~l~~~L 44 (325)
T PF07693_consen 2 KPYAKALAEIIKNPDS---DDPFVIGLYGEWGSGKSSFLNMLKEEL 44 (325)
T ss_pred hHHHHHHHHHHhccCC---CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 3445667777765432 456799999999999999999987754
No 256
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=95.71 E-value=0.061 Score=55.05 Aligned_cols=112 Identities=21% Similarity=0.271 Sum_probs=61.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccc--c--ccc---cC--ceeEEEeCCCCCHHHHHHHHHHHhcCCCC----CcCc---h
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK--L--TEA---FE--PKAWVCVSHDFDVLRISKAILESITLSPC----DLKD---L 245 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~--~--~~~---f~--~~~wv~~~~~~~~~~~~~~i~~~~~~~~~----~~~~---~ 245 (1402)
.+++|+|+.|.|||||.+.+..+. + ... |. .+.|+ .+ .+.++.++.... .... -
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~~~G~v~~~~~~~~~~~~~~~~~--~q--------~~~l~~~~L~~~~~~~~~~~LSgG 91 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLYASGKARLISFLPKFSRNKLIFI--DQ--------LQFLIDVGLGYLTLGQKLSTLSGG 91 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhhcCCcEEECCcccccccccEEEE--hH--------HHHHHHcCCCccccCCCcCcCCHH
Confidence 589999999999999999986432 1 111 11 12222 22 355666664321 1111 1
Q ss_pred HHHHHHHHHHhcCC--eEEEEEeCCCcC-ChhhHHHhhcccCCC-CCCcEEEEEccchhhhh
Q 000594 246 NSVQLKLKEAVFKK--KFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 246 ~~~~~~l~~~l~~k--~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~ 303 (1402)
+...-.+...+..+ +=++++|+.-.. +....+.+...+... ..|..||++|.+.+...
T Consensus 92 q~qrl~laral~~~~~p~llLlDEPt~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~~ 153 (176)
T cd03238 92 ELQRVKLASELFSEPPGTLFILDEPSTGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVLS 153 (176)
T ss_pred HHHHHHHHHHHhhCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 22233455556666 778888987332 222333333333221 24677888888877654
No 257
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=95.70 E-value=0.033 Score=57.35 Aligned_cols=116 Identities=27% Similarity=0.351 Sum_probs=69.7
Q ss_pred CccccchHHHHHHHHHHh---cCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVL---ENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~---~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
..++|.+..++.+++-.. .+.+ .--|.+||.-|+||+.|++++.+.. ....-. -|-|.+
T Consensus 60 ~~l~Gvd~qk~~L~~NT~~F~~G~p-----ANnVLLwGaRGtGKSSLVKA~~~e~-~~~glr--LVEV~k---------- 121 (287)
T COG2607 60 ADLVGVDRQKEALVRNTEQFAEGLP-----ANNVLLWGARGTGKSSLVKALLNEY-ADEGLR--LVEVDK---------- 121 (287)
T ss_pred HHHhCchHHHHHHHHHHHHHHcCCc-----ccceEEecCCCCChHHHHHHHHHHH-HhcCCe--EEEEcH----------
Confidence 468999999888876432 2221 1257899999999999999998763 222221 122221
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCc-CChhhHHHhhcccCCC---CCCcEEEEEccc
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWS-ERYDLWQALKSPFMAG---APGSRIIVTTRS 298 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~-~~~~~~~~~~~~l~~~---~~gs~iivTtR~ 298 (1402)
.+..++..+.+.++. +.+||+|..||+.= +..+.+..++..+..+ .+...++..|.+
T Consensus 122 ---------~dl~~Lp~l~~~Lr~--~~~kFIlFcDDLSFe~gd~~yK~LKs~LeG~ve~rP~NVl~YATSN 182 (287)
T COG2607 122 ---------EDLATLPDLVELLRA--RPEKFILFCDDLSFEEGDDAYKALKSALEGGVEGRPANVLFYATSN 182 (287)
T ss_pred ---------HHHhhHHHHHHHHhc--CCceEEEEecCCCCCCCchHHHHHHHHhcCCcccCCCeEEEEEecC
Confidence 122233334444443 47899999999943 3345677777777543 233345555544
No 258
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=95.70 E-value=0.034 Score=62.07 Aligned_cols=87 Identities=22% Similarity=0.206 Sum_probs=48.4
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcccccc-ccCceeEEEeCCC-CCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSHD-FDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
..++++|+|++|+||||++..++...... .-..+..|+.... ....+.+....+.++.+.....+..++...+... .
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~~r~~a~eql~~~~~~~~~p~~~~~~~~~l~~~l~~~-~ 271 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDTYRIGAVEQLKTYAKILGVPVKVARDPKELRKALDRL-R 271 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCccchhHHHHHHHHHHHhCCceeccCCHHHHHHHHHHc-c
Confidence 45799999999999999999988654222 1123445554321 1223333444444444332333444454445443 3
Q ss_pred CCeEEEEEeCC
Q 000594 258 KKKFLIVLDDV 268 (1402)
Q Consensus 258 ~k~~LlVlDdv 268 (1402)
+ .=+|++|..
T Consensus 272 ~-~d~vliDt~ 281 (282)
T TIGR03499 272 D-KDLILIDTA 281 (282)
T ss_pred C-CCEEEEeCC
Confidence 3 347777754
No 259
>PRK06835 DNA replication protein DnaC; Validated
Probab=95.70 E-value=0.013 Score=66.19 Aligned_cols=102 Identities=17% Similarity=0.222 Sum_probs=54.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.-+.++|..|+|||.||.++++......+ .++++++. +++..+...-. . ...+... .+ +.+. +-=
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~-~V~y~t~~------~l~~~l~~~~~-~--~~~~~~~---~~-~~l~-~~D 248 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGK-SVIYRTAD------ELIEILREIRF-N--NDKELEE---VY-DLLI-NCD 248 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCC-eEEEEEHH------HHHHHHHHHHh-c--cchhHHH---HH-HHhc-cCC
Confidence 46899999999999999999986544433 35555543 23333322111 1 1111111 12 2222 224
Q ss_pred EEEEeCCCcCChhhHHH--hhcccCCC-CCCcEEEEEccc
Q 000594 262 LIVLDDVWSERYDLWQA--LKSPFMAG-APGSRIIVTTRS 298 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~--~~~~l~~~-~~gs~iivTtR~ 298 (1402)
|||+||+.......|.. +..-+... ..+-.+||||..
T Consensus 249 LLIIDDlG~e~~t~~~~~~Lf~iin~R~~~~k~tIiTSNl 288 (329)
T PRK06835 249 LLIIDDLGTEKITEFSKSELFNLINKRLLRQKKMIISTNL 288 (329)
T ss_pred EEEEeccCCCCCCHHHHHHHHHHHHHHHHCCCCEEEECCC
Confidence 89999996554344432 22222111 234568888874
No 260
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.67 E-value=0.042 Score=63.17 Aligned_cols=24 Identities=33% Similarity=0.393 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++.++|++|+||||+|.+++..
T Consensus 223 ~~vi~lvGptGvGKTTtaaKLA~~ 246 (432)
T PRK12724 223 RKVVFFVGPTGSGKTTSIAKLAAK 246 (432)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHH
Confidence 478999999999999999998864
No 261
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=95.64 E-value=0.087 Score=62.00 Aligned_cols=87 Identities=23% Similarity=0.180 Sum_probs=47.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCC---cCchHHHHHHHHHH
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSPCD---LKDLNSVQLKLKEA 255 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~---~~~~~~~~~~l~~~ 255 (1402)
.+.+|.++|.+|+||||.|..++....+..+ .++.|+... .....+.++.+.++++.+... ..+.........+.
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~-kV~lV~~D~~R~aa~eQL~~la~~~gvp~~~~~~~~d~~~i~~~al~~ 172 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGL-KVGLVAADTYRPAAYDQLKQLAEKIGVPFYGDPDNKDAVEIAKEGLEK 172 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCC-eEEEecCCCCCHHHHHHHHHHHHHcCCcEEecCCccCHHHHHHHHHHH
Confidence 4689999999999999999999865433323 233343321 122344566666666543221 12222222222222
Q ss_pred hcCCeEEEEEeCC
Q 000594 256 VFKKKFLIVLDDV 268 (1402)
Q Consensus 256 l~~k~~LlVlDdv 268 (1402)
..+. -+||+|..
T Consensus 173 ~~~~-DvVIIDTA 184 (437)
T PRK00771 173 FKKA-DVIIVDTA 184 (437)
T ss_pred hhcC-CEEEEECC
Confidence 3333 46778876
No 262
>PHA00729 NTP-binding motif containing protein
Probab=95.62 E-value=0.027 Score=59.11 Aligned_cols=24 Identities=42% Similarity=0.505 Sum_probs=21.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
...|.|+|.+|+||||||..+.+.
T Consensus 17 f~nIlItG~pGvGKT~LA~aLa~~ 40 (226)
T PHA00729 17 FVSAVIFGKQGSGKTTYALKVARD 40 (226)
T ss_pred eEEEEEECCCCCCHHHHHHHHHHH
Confidence 347889999999999999999875
No 263
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=95.60 E-value=0.19 Score=64.74 Aligned_cols=181 Identities=17% Similarity=0.148 Sum_probs=92.4
Q ss_pred CccccchHHHHHHHHHHhcCCC-------CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDP-------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~-------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
.++.|.+..++++.+.+.-.-. -+....+-+.++|++|.|||++|+++++. ....| +.+... +
T Consensus 453 ~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e-~~~~f-----i~v~~~----~ 522 (733)
T TIGR01243 453 SDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATE-SGANF-----IAVRGP----E 522 (733)
T ss_pred hhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHh-cCCCE-----EEEehH----H
Confidence 4467888887777766532100 01123456889999999999999999975 22222 222211 1
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC------C--h----hhHHHhhcccCC--CCCCcEE
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE------R--Y----DLWQALKSPFMA--GAPGSRI 292 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~------~--~----~~~~~~~~~l~~--~~~gs~i 292 (1402)
++.... ......+...+...-...+.+|++|++..- . . .....+...+.. ...+--|
T Consensus 523 ----l~~~~v-----Gese~~i~~~f~~A~~~~p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~v 593 (733)
T TIGR01243 523 ----ILSKWV-----GESEKAIREIFRKARQAAPAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVV 593 (733)
T ss_pred ----Hhhccc-----CcHHHHHHHHHHHHHhcCCEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEE
Confidence 111110 011122222333333467899999998320 0 0 011223333322 1234556
Q ss_pred EEEccchhhhhhc-CC--CcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCCh
Q 000594 293 IVTTRSMDVASTM-GS--GKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLP 358 (1402)
Q Consensus 293 ivTtR~~~v~~~~-~~--~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~P 358 (1402)
|.||...+..+.. .. .-...+.++..+.++-.++|..+.-+. ......+ ...+++.+.|.-
T Consensus 594 I~aTn~~~~ld~allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~-~~~~~~~----l~~la~~t~g~s 657 (733)
T TIGR01243 594 IAATNRPDILDPALLRPGRFDRLILVPPPDEEARKEIFKIHTRSM-PLAEDVD----LEELAEMTEGYT 657 (733)
T ss_pred EEeCCChhhCCHhhcCCCccceEEEeCCcCHHHHHHHHHHHhcCC-CCCccCC----HHHHHHHcCCCC
Confidence 6677665543321 11 122345588888888888887665221 1111112 345667777654
No 264
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.59 E-value=0.12 Score=60.94 Aligned_cols=87 Identities=17% Similarity=0.109 Sum_probs=49.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEEeCCCC-CHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSHDF-DVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
.+++.++|++|+||||++..++.... ...-..+..|+..... ...+.++...+.++.+.....+..++...+.+. .
T Consensus 221 ~~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~~~~~~~~~l~~~l~~~-~- 298 (424)
T PRK05703 221 GGVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTYRIGAVEQLKTYAKIMGIPVEVVYDPKELAKALEQL-R- 298 (424)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCccHHHHHHHHHHHHHHhCCceEccCCHHhHHHHHHHh-C-
Confidence 46999999999999999988876433 2222345556543211 122334444444444332233344555555443 2
Q ss_pred CeEEEEEeCCC
Q 000594 259 KKFLIVLDDVW 269 (1402)
Q Consensus 259 k~~LlVlDdv~ 269 (1402)
..=+|++|...
T Consensus 299 ~~DlVlIDt~G 309 (424)
T PRK05703 299 DCDVILIDTAG 309 (424)
T ss_pred CCCEEEEeCCC
Confidence 35678889763
No 265
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=95.59 E-value=0.065 Score=57.17 Aligned_cols=125 Identities=17% Similarity=0.158 Sum_probs=72.4
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-----CCCHHHHHHHHHHHhcCCCC-------CcCchHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-----DFDVLRISKAILESITLSPC-------DLKDLNSVQ 249 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-----~~~~~~~~~~i~~~~~~~~~-------~~~~~~~~~ 249 (1402)
.+++|||..|.||||+|+.+..= . .--...+++.-.+ .....+-..++++.++.... +...-+.-.
T Consensus 40 e~~glVGESG~GKSTlgr~i~~L-~-~pt~G~i~f~g~~i~~~~~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQR 117 (268)
T COG4608 40 ETLGLVGESGCGKSTLGRLILGL-E-EPTSGEILFEGKDITKLSKEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQR 117 (268)
T ss_pred CEEEEEecCCCCHHHHHHHHHcC-c-CCCCceEEEcCcchhhcchhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhhh
Confidence 58999999999999999999852 2 2222233322111 22344556677777775432 111112222
Q ss_pred HHHHHHhcCCeEEEEEeCCCcCC-hhhHHHhhcccCC--CCCCcEEEEEccchhhhhhcCCC
Q 000594 250 LKLKEAVFKKKFLIVLDDVWSER-YDLWQALKSPFMA--GAPGSRIIVTTRSMDVASTMGSG 308 (1402)
Q Consensus 250 ~~l~~~l~~k~~LlVlDdv~~~~-~~~~~~~~~~l~~--~~~gs~iivTtR~~~v~~~~~~~ 308 (1402)
-.+.+.|.-++-++|.|..-+.- ...-.++...+.+ ...|-..+..|-+-.|+..+...
T Consensus 118 i~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdr 179 (268)
T COG4608 118 IGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDR 179 (268)
T ss_pred HHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhccc
Confidence 34678888999999999863321 1111222222221 23466788888888887776543
No 266
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.59 E-value=0.03 Score=62.67 Aligned_cols=84 Identities=21% Similarity=0.183 Sum_probs=54.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 253 (1402)
+.-+++-|+|++|+||||||.++.... ...=..++||+..+.++.. .+++++.... .....++....+.
T Consensus 53 p~G~iteI~G~~GsGKTtLaL~~~~~~-~~~g~~v~yId~E~~~~~~-----~a~~lGvd~~~l~v~~p~~~eq~l~~~~ 126 (321)
T TIGR02012 53 PRGRIIEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDPV-----YARKLGVDIDNLLVSQPDTGEQALEIAE 126 (321)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEEcccchhHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 445799999999999999999987653 2233457799887766653 3444443211 1233444444454
Q ss_pred HHhc-CCeEEEEEeCC
Q 000594 254 EAVF-KKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (1402)
...+ +..-+||+|.|
T Consensus 127 ~li~~~~~~lIVIDSv 142 (321)
T TIGR02012 127 TLVRSGAVDIIVVDSV 142 (321)
T ss_pred HHhhccCCcEEEEcch
Confidence 4443 45679999998
No 267
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=95.59 E-value=0.069 Score=67.00 Aligned_cols=122 Identities=19% Similarity=0.211 Sum_probs=74.9
Q ss_pred CccccchHHHHHHHHHHhcCCCCCC--CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDA--ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~--~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
..++|.++.+..|.+.+.....+-. ...-.+.+.|+.|+|||-||++++.. +-+..+..+-++.+. ... +
T Consensus 562 ~~V~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~-~Fgse~~~IriDmse------~~e-v 633 (898)
T KOG1051|consen 562 ERVIGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEY-VFGSEENFIRLDMSE------FQE-V 633 (898)
T ss_pred hhccchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHH-HcCCccceEEechhh------hhh-h
Confidence 4578888889888888875442211 24678889999999999999998864 333344444444443 222 3
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeE-EEEEeCCCcCChhhHHHhhcccCC
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKF-LIVLDDVWSERYDLWQALKSPFMA 285 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~-LlVlDdv~~~~~~~~~~~~~~l~~ 285 (1402)
.+-++.++. ... .+....|.+.++.++| +|+||||...+.+....+...+..
T Consensus 634 skligsp~g-yvG-~e~gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~lD~ 686 (898)
T KOG1051|consen 634 SKLIGSPPG-YVG-KEEGGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQLLDR 686 (898)
T ss_pred hhccCCCcc-ccc-chhHHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHHHhc
Confidence 333333221 111 1223356667777776 667899977776666655555543
No 268
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=95.57 E-value=0.014 Score=69.01 Aligned_cols=106 Identities=24% Similarity=0.318 Sum_probs=64.4
Q ss_pred CCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 152 SEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 152 ~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
.+.+-+|.++-+++|++++.-..-.+.-+-+++..+|++|||||.+|+.++.- ..+.|. -++|..-.|..+|-..-
T Consensus 409 LdeDHYgm~dVKeRILEfiAV~kLrgs~qGkIlCf~GPPGVGKTSI~kSIA~A-LnRkFf---RfSvGG~tDvAeIkGHR 484 (906)
T KOG2004|consen 409 LDEDHYGMEDVKERILEFIAVGKLRGSVQGKILCFVGPPGVGKTSIAKSIARA-LNRKFF---RFSVGGMTDVAEIKGHR 484 (906)
T ss_pred hcccccchHHHHHHHHHHHHHHhhcccCCCcEEEEeCCCCCCcccHHHHHHHH-hCCceE---EEeccccccHHhhcccc
Confidence 35667999999999999986433222245589999999999999999999875 333331 23455544444332111
Q ss_pred HHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCC
Q 000594 232 LESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDV 268 (1402)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv 268 (1402)
-..++ .+ ...+++.+++. +...-|+.+|.|
T Consensus 485 RTYVG-----AM-PGkiIq~LK~v-~t~NPliLiDEv 514 (906)
T KOG2004|consen 485 RTYVG-----AM-PGKIIQCLKKV-KTENPLILIDEV 514 (906)
T ss_pred eeeec-----cC-ChHHHHHHHhh-CCCCceEEeehh
Confidence 11111 01 12233333332 456678889998
No 269
>PRK13695 putative NTPase; Provisional
Probab=95.57 E-value=0.0067 Score=62.64 Aligned_cols=23 Identities=35% Similarity=0.436 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHccc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.|+|+|.+|+|||||++.+++..
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 37899999999999999988753
No 270
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=95.54 E-value=0.012 Score=58.05 Aligned_cols=106 Identities=14% Similarity=0.108 Sum_probs=58.9
Q ss_pred ccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccc--ccccCceeEEEeCCCCCHHHHHHHHHHH
Q 000594 157 YGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKL--TEAFEPKAWVCVSHDFDVLRISKAILES 234 (1402)
Q Consensus 157 vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~--~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (1402)
||+...++++.+.+..-.. ...-|.|+|..|+||+++|+.++.... ...|..+- .... . .+
T Consensus 1 vG~S~~~~~l~~~l~~~a~----~~~pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~---~~~~-~-----~~---- 63 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAK----SSSPVLITGEPGTGKSLLARALHRYSGRANGPFIVID---CASL-P-----AE---- 63 (138)
T ss_dssp --SCHHHHHHHHHHHHHHC----SSS-EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCC---HHCT-C-----HH----
T ss_pred CCCCHHHHHHHHHHHHHhC----CCCcEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEec---hhhC-c-----HH----
Confidence 5667777777776654321 123578999999999999999886431 11221110 0010 0 11
Q ss_pred hcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCC-CCCCcEEEEEccc
Q 000594 235 ITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMA-GAPGSRIIVTTRS 298 (1402)
Q Consensus 235 ~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~-~~~gs~iivTtR~ 298 (1402)
.+.+ -+.--|+++|+..-..+....+...+.. .....|+|.||+.
T Consensus 64 ----------------~l~~---a~~gtL~l~~i~~L~~~~Q~~L~~~l~~~~~~~~RlI~ss~~ 109 (138)
T PF14532_consen 64 ----------------LLEQ---AKGGTLYLKNIDRLSPEAQRRLLDLLKRQERSNVRLIASSSQ 109 (138)
T ss_dssp ----------------HHHH---CTTSEEEEECGCCS-HHHHHHHHHHHHHCTTTTSEEEEEECC
T ss_pred ----------------HHHH---cCCCEEEECChHHCCHHHHHHHHHHHHhcCCCCeEEEEEeCC
Confidence 1111 1334577899865444555555555543 2567899999885
No 271
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=95.50 E-value=0.12 Score=53.72 Aligned_cols=119 Identities=15% Similarity=0.208 Sum_probs=64.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEE---eCCCCCHHHH------HHHHHHHhcCCCC------CcCchH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC---VSHDFDVLRI------SKAILESITLSPC------DLKDLN 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~---~~~~~~~~~~------~~~i~~~~~~~~~------~~~~~~ 246 (1402)
.+++|+|..|.|||||++.++... ......+++. +. ..+..+. ..++++.++.... ....-+
T Consensus 26 ~~~~l~G~nGsGKStLl~~i~G~~--~~~~G~v~~~g~~~~-~~~~~~~~~~i~~~~q~l~~~gl~~~~~~~~~~LS~G~ 102 (180)
T cd03214 26 EIVGILGPNGAGKSTLLKTLAGLL--KPSSGEILLDGKDLA-SLSPKELARKIAYVPQALELLGLAHLADRPFNELSGGE 102 (180)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCcEEEECCEECC-cCCHHHHHHHHhHHHHHHHHcCCHhHhcCCcccCCHHH
Confidence 589999999999999999998632 2223333332 21 1121111 1124455443311 111122
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCC-CC-CcEEEEEccchhhhh
Q 000594 247 SVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-AP-GSRIIVTTRSMDVAS 303 (1402)
Q Consensus 247 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~-gs~iivTtR~~~v~~ 303 (1402)
...-.+.+.+...+-++++|+--.. +.+..+.+...+... .. |..||++|.+.+...
T Consensus 103 ~qrl~laral~~~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~ 162 (180)
T cd03214 103 RQRVLLARALAQEPPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAA 162 (180)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH
Confidence 3333466667778889999997431 223333343333321 12 667888888766543
No 272
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=95.49 E-value=0.052 Score=61.15 Aligned_cols=58 Identities=22% Similarity=0.250 Sum_probs=41.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-cc----cccCceeEEEeCCCCCHHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LT----EAFEPKAWVCVSHDFDVLRISKAILESITL 237 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 237 (1402)
+.-+++-|+|.+|+|||++|.+++-.. .. ..=..++||+....|+++++. ++++.++.
T Consensus 94 ~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f~~eRi~-~~a~~~g~ 156 (313)
T TIGR02238 94 ESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTFRPDRIR-AIAERFGV 156 (313)
T ss_pred cCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCCCHHHHH-HHHHHcCC
Confidence 344799999999999999998876322 11 112367899999999888865 45666654
No 273
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=95.48 E-value=0.21 Score=61.46 Aligned_cols=184 Identities=17% Similarity=0.159 Sum_probs=98.9
Q ss_pred CccccchH---HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 154 PAVYGRDE---DKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
.++.|-++ |+++++++|.++.. -+..-++=+.++|++|.|||-||++++-.. .+=|+.++..
T Consensus 311 kDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEA------gVPF~svSGS------ 378 (774)
T KOG0731|consen 311 KDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEA------GVPFFSVSGS------ 378 (774)
T ss_pred ccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhccc------CCceeeechH------
Confidence 45778876 45556666654321 112445678899999999999999999752 1224555532
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC---------------ChhhHHHhhcccCCCCCC--c
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE---------------RYDLWQALKSPFMAGAPG--S 290 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~---------------~~~~~~~~~~~l~~~~~g--s 290 (1402)
+..+.+.... ...+.+.....-...+..|.+|++... ......++...+.....+ -
T Consensus 379 --EFvE~~~g~~-----asrvr~lf~~ar~~aP~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~v 451 (774)
T KOG0731|consen 379 --EFVEMFVGVG-----ASRVRDLFPLARKNAPSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGV 451 (774)
T ss_pred --HHHHHhcccc-----hHHHHHHHHHhhccCCeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcE
Confidence 2222222111 111111222222467788888887321 011233343333333322 3
Q ss_pred EEEEEccchhhhhhc--CCC-cceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHH
Q 000594 291 RIIVTTRSMDVASTM--GSG-KNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLA 360 (1402)
Q Consensus 291 ~iivTtR~~~v~~~~--~~~-~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLa 360 (1402)
-++-+|...++.+.. ..+ -...+.++.-+.....++|.-|+-.-... .+..++++ |+...-|.+=|
T Consensus 452 i~~a~tnr~d~ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~---~e~~dl~~-~a~~t~gf~ga 520 (774)
T KOG0731|consen 452 IVLAATNRPDILDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD---DEDVDLSK-LASLTPGFSGA 520 (774)
T ss_pred EEEeccCCccccCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC---cchhhHHH-HHhcCCCCcHH
Confidence 344456666655432 111 12334477777788888998888433221 34456666 88888887733
No 274
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=95.46 E-value=0.058 Score=54.76 Aligned_cols=45 Identities=20% Similarity=0.348 Sum_probs=32.6
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 156 VYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+||....+.++.+.+..... .+ .-|.|+|..|+||+.+|+.+++.
T Consensus 1 liG~s~~m~~~~~~~~~~a~---~~-~pVlI~GE~GtGK~~lA~~IH~~ 45 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAAS---SD-LPVLITGETGTGKELLARAIHNN 45 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTT---ST-S-EEEECSTTSSHHHHHHHHHHC
T ss_pred CEeCCHHHHHHHHHHHHHhC---CC-CCEEEEcCCCCcHHHHHHHHHHh
Confidence 47888888888887765432 22 34669999999999999999874
No 275
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=95.43 E-value=0.011 Score=69.57 Aligned_cols=50 Identities=22% Similarity=0.313 Sum_probs=39.7
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+++|.++.+++|++.|..........-+++.++|++|+||||||+.+.+-
T Consensus 77 d~yGlee~ieriv~~l~~Aa~gl~~~~~IL~LvGPpG~GKSsLa~~la~~ 126 (644)
T PRK15455 77 EFYGMEEAIEQIVSYFRHAAQGLEEKKQILYLLGPVGGGKSSLAERLKSL 126 (644)
T ss_pred cccCcHHHHHHHHHHHHHHHHhcCCCCceEEEecCCCCCchHHHHHHHHH
Confidence 58999999999999994322111144579999999999999999999863
No 276
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=95.41 E-value=0.075 Score=54.80 Aligned_cols=22 Identities=50% Similarity=0.626 Sum_probs=19.9
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
++.++|++|.||||++..++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~ 23 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALY 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 6889999999999999998865
No 277
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=95.41 E-value=0.013 Score=56.38 Aligned_cols=36 Identities=22% Similarity=0.379 Sum_probs=26.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC 217 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~ 217 (1402)
--|.|.|++|+||||+++.+.+......|...-+++
T Consensus 6 mki~ITG~PGvGKtTl~~ki~e~L~~~g~kvgGf~t 41 (179)
T COG1618 6 MKIFITGRPGVGKTTLVLKIAEKLREKGYKVGGFIT 41 (179)
T ss_pred eEEEEeCCCCccHHHHHHHHHHHHHhcCceeeeEEe
Confidence 468999999999999999998754444465444433
No 278
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=95.39 E-value=0.048 Score=59.75 Aligned_cols=130 Identities=21% Similarity=0.265 Sum_probs=69.9
Q ss_pred cchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc--cccccCceeE----EEeCCCCC--------
Q 000594 158 GRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK--LTEAFEPKAW----VCVSHDFD-------- 223 (1402)
Q Consensus 158 Gr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~--~~~~f~~~~w----v~~~~~~~-------- 223 (1402)
+|..+..--+++|+. +.+..|.+.|.+|.|||.||.+..-.. .++.|..++- +.+.+...
T Consensus 228 prn~eQ~~ALdlLld------~dI~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~dIGfLPG~eEe 301 (436)
T COG1875 228 PRNAEQRVALDLLLD------DDIDLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGEDIGFLPGTEEE 301 (436)
T ss_pred cccHHHHHHHHHhcC------CCCCeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCcccccCcCCCchhh
Confidence 466677777788876 456799999999999999987764322 3344443321 22222211
Q ss_pred -HHHHHHHHH---HHhcCCCCCcCchHHHHHHH---------HHHhcCC---eEEEEEeCCCcCChhhHHHhhcccCCCC
Q 000594 224 -VLRISKAIL---ESITLSPCDLKDLNSVQLKL---------KEAVFKK---KFLIVLDDVWSERYDLWQALKSPFMAGA 287 (1402)
Q Consensus 224 -~~~~~~~i~---~~~~~~~~~~~~~~~~~~~l---------~~~l~~k---~~LlVlDdv~~~~~~~~~~~~~~l~~~~ 287 (1402)
+.-.+..|. +.+.... +.. ...+...+ ..+.+++ .-+|++|...+-.+.+ ++.-+...+
T Consensus 302 Km~PWmq~i~DnLE~L~~~~-~~~-~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTphe---ikTiltR~G 376 (436)
T COG1875 302 KMGPWMQAIFDNLEVLFSPN-EPG-DRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHE---LKTILTRAG 376 (436)
T ss_pred hccchHHHHHhHHHHHhccc-ccc-hHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHH---HHHHHHhcc
Confidence 111122222 2221111 011 11111111 1233443 4589999996644433 444455668
Q ss_pred CCcEEEEEccc
Q 000594 288 PGSRIIVTTRS 298 (1402)
Q Consensus 288 ~gs~iivTtR~ 298 (1402)
.||||+.|---
T Consensus 377 ~GsKIVl~gd~ 387 (436)
T COG1875 377 EGSKIVLTGDP 387 (436)
T ss_pred CCCEEEEcCCH
Confidence 99999998754
No 279
>PRK14974 cell division protein FtsY; Provisional
Probab=95.35 E-value=0.085 Score=59.77 Aligned_cols=90 Identities=17% Similarity=0.144 Sum_probs=48.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCC--HHHHHHHHHHHhcCCCC---CcCchHH-HHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFD--VLRISKAILESITLSPC---DLKDLNS-VQLKL 252 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~---~~~~~~~-~~~~l 252 (1402)
.++.+|.++|++|+||||++..++.......+ .++.+. .+.+. ..+-++...+.++.+.. ...+... ....+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g~-~V~li~-~Dt~R~~a~eqL~~~a~~lgv~v~~~~~g~dp~~v~~~ai 215 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNGF-SVVIAA-GDTFRAGAIEQLEEHAERLGVKVIKHKYGADPAAVAYDAI 215 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCC-eEEEec-CCcCcHHHHHHHHHHHHHcCCceecccCCCCHHHHHHHHH
Confidence 34689999999999999988888764333333 233333 23332 23345556666654321 1122222 22333
Q ss_pred HHHhcCCeEEEEEeCCCc
Q 000594 253 KEAVFKKKFLIVLDDVWS 270 (1402)
Q Consensus 253 ~~~l~~k~~LlVlDdv~~ 270 (1402)
........=+|++|-...
T Consensus 216 ~~~~~~~~DvVLIDTaGr 233 (336)
T PRK14974 216 EHAKARGIDVVLIDTAGR 233 (336)
T ss_pred HHHHhCCCCEEEEECCCc
Confidence 332222223889998844
No 280
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=95.35 E-value=0.18 Score=50.23 Aligned_cols=123 Identities=19% Similarity=0.322 Sum_probs=70.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEE---------------------eCCCC------------------
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC---------------------VSHDF------------------ 222 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~---------------------~~~~~------------------ 222 (1402)
..+.++|++|.||||+.+.+|... .-=...+|+. |-|++
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e--~pt~G~i~~~~~dl~~l~~~~iP~LRR~IGvVFQD~rLL~~~tvyeNVA~pL~v 106 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE--RPTRGKILVNGHDLSRLKGREIPFLRRQIGVVFQDFRLLPDRTVYENVALPLRV 106 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh--cCCCceEEECCeecccccccccchhhheeeeEeeeccccccchHhhhhhhhhhc
Confidence 589999999999999999999753 1111223331 11111
Q ss_pred ---C---HHHHHHHHHHHhcCCCC------CcCchHHHHHHHHHHhcCCeEEEEEeCCCc--CChhhHHHhhcccCCCCC
Q 000594 223 ---D---VLRISKAILESITLSPC------DLKDLNSVQLKLKEAVFKKKFLIVLDDVWS--ERYDLWQALKSPFMAGAP 288 (1402)
Q Consensus 223 ---~---~~~~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--~~~~~~~~~~~~l~~~~~ 288 (1402)
. ..+-..+.++.++.... +...-++-...|.+.+-+++-+++-|.--. +..-.|+-+.-.-.-+..
T Consensus 107 ~G~~~~~i~~rV~~~L~~VgL~~k~~~lP~~LSGGEQQRvaIARAiV~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~ 186 (223)
T COG2884 107 IGKPPREIRRRVSEVLDLVGLKHKARALPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDPDLSWEIMRLFEEINRL 186 (223)
T ss_pred cCCCHHHHHHHHHHHHHHhccchhhhcCccccCchHHHHHHHHHHHccCCCeEeecCCCCCCChHHHHHHHHHHHHHhhc
Confidence 1 12222333444443321 222334444567778889999999996422 112345533222223456
Q ss_pred CcEEEEEccchhhhhhcC
Q 000594 289 GSRIIVTTRSMDVASTMG 306 (1402)
Q Consensus 289 gs~iivTtR~~~v~~~~~ 306 (1402)
|+.||++|-+.++...+.
T Consensus 187 GtTVl~ATHd~~lv~~~~ 204 (223)
T COG2884 187 GTTVLMATHDLELVNRMR 204 (223)
T ss_pred CcEEEEEeccHHHHHhcc
Confidence 999999999988877664
No 281
>CHL00195 ycf46 Ycf46; Provisional
Probab=95.35 E-value=0.11 Score=62.19 Aligned_cols=160 Identities=15% Similarity=0.121 Sum_probs=78.6
Q ss_pred CccccchHHHHHHHHHHhc----CCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLE----NDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~----~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~ 229 (1402)
.++.|.+..++.+.+.... ....+...++-|.++|++|.|||.+|+++++.. ...| +.++- ..+.
T Consensus 228 ~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~-~~~~-----~~l~~----~~l~- 296 (489)
T CHL00195 228 SDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDW-QLPL-----LRLDV----GKLF- 296 (489)
T ss_pred HHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHh-CCCE-----EEEEh----HHhc-
Confidence 3567777666655542210 000011344678899999999999999998752 2111 11111 1111
Q ss_pred HHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC--------ChhhH----HHhhcccCCCCCCcEEEEEcc
Q 000594 230 AILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE--------RYDLW----QALKSPFMAGAPGSRIIVTTR 297 (1402)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~--------~~~~~----~~~~~~l~~~~~gs~iivTtR 297 (1402)
.... ......+...++..-...+++|++|++..- +...- ..+...+.....+--||.||.
T Consensus 297 ---~~~v-----Gese~~l~~~f~~A~~~~P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN 368 (489)
T CHL00195 297 ---GGIV-----GESESRMRQMIRIAEALSPCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATAN 368 (489)
T ss_pred ---cccc-----ChHHHHHHHHHHHHHhcCCcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecC
Confidence 1000 011112222223223457899999998421 00001 112222222233445666776
Q ss_pred chhhhh-hc-CC-CcceeecccCCChhhHHHHHHHhhc
Q 000594 298 SMDVAS-TM-GS-GKNYELELKLLSDDDRWSVFVNHAF 332 (1402)
Q Consensus 298 ~~~v~~-~~-~~-~~~~~~~l~~L~~~~~~~lf~~~a~ 332 (1402)
..+... .+ .. .-...+.++.-+.++-.++|..+.-
T Consensus 369 ~~~~Ld~allR~GRFD~~i~v~lP~~~eR~~Il~~~l~ 406 (489)
T CHL00195 369 NIDLLPLEILRKGRFDEIFFLDLPSLEEREKIFKIHLQ 406 (489)
T ss_pred ChhhCCHHHhCCCcCCeEEEeCCcCHHHHHHHHHHHHh
Confidence 544222 21 11 1123345777788888888887764
No 282
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.35 E-value=0.048 Score=62.34 Aligned_cols=88 Identities=19% Similarity=0.216 Sum_probs=51.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccccc-ccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTE-AFEPKAWVCVSH-DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~-~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
.++++++|+.|+||||++.++....... ....+..++... .....+-++...+.++.+.....+..++...+.+ +.+
T Consensus 137 g~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~~~~~~l~~~l~~-l~~ 215 (374)
T PRK14722 137 GGVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAVKDGGDLQLALAE-LRN 215 (374)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCceEecCCcccHHHHHHH-hcC
Confidence 4699999999999999999998753211 123445555332 2234555666666666544333333333333433 344
Q ss_pred CeEEEEEeCCCc
Q 000594 259 KKFLIVLDDVWS 270 (1402)
Q Consensus 259 k~~LlVlDdv~~ 270 (1402)
+ =+|++|...-
T Consensus 216 ~-DlVLIDTaG~ 226 (374)
T PRK14722 216 K-HMVLIDTIGM 226 (374)
T ss_pred C-CEEEEcCCCC
Confidence 4 4566898843
No 283
>PRK09354 recA recombinase A; Provisional
Probab=95.33 E-value=0.043 Score=61.91 Aligned_cols=84 Identities=21% Similarity=0.185 Sum_probs=55.3
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 253 (1402)
+.-+++-|+|++|+||||||.+++... ...=..++||+..+.++.. .+++++.... .....++....+.
T Consensus 58 p~G~IteI~G~~GsGKTtLal~~~~~~-~~~G~~~~yId~E~s~~~~-----~a~~lGvdld~lli~qp~~~Eq~l~i~~ 131 (349)
T PRK09354 58 PRGRIVEIYGPESSGKTTLALHAIAEA-QKAGGTAAFIDAEHALDPV-----YAKKLGVDIDNLLVSQPDTGEQALEIAD 131 (349)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHH-HHcCCcEEEECCccchHHH-----HHHHcCCCHHHeEEecCCCHHHHHHHHH
Confidence 445799999999999999999987653 2333567899988877753 3444443211 1223444444454
Q ss_pred HHhc-CCeEEEEEeCC
Q 000594 254 EAVF-KKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (1402)
..++ ++.-+||+|-|
T Consensus 132 ~li~s~~~~lIVIDSv 147 (349)
T PRK09354 132 TLVRSGAVDLIVVDSV 147 (349)
T ss_pred HHhhcCCCCEEEEeCh
Confidence 4443 45669999998
No 284
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=95.31 E-value=0.11 Score=61.68 Aligned_cols=70 Identities=27% Similarity=0.308 Sum_probs=45.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC--CCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD--FDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKK 259 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 259 (1402)
.-|.|.|..|+|||+||+++++..-+...-.+.+|+++.- ...+.+++.+ ...+.+.+...
T Consensus 432 ~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk~l-----------------~~vfse~~~~~ 494 (952)
T KOG0735|consen 432 GNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQKFL-----------------NNVFSEALWYA 494 (952)
T ss_pred ccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHHHH-----------------HHHHHHHHhhC
Confidence 4688999999999999999997644444444555555421 1122222211 12234455678
Q ss_pred eEEEEEeCC
Q 000594 260 KFLIVLDDV 268 (1402)
Q Consensus 260 ~~LlVlDdv 268 (1402)
+-+|||||+
T Consensus 495 PSiIvLDdl 503 (952)
T KOG0735|consen 495 PSIIVLDDL 503 (952)
T ss_pred CcEEEEcch
Confidence 999999998
No 285
>COG0468 RecA RecA/RadA recombinase [DNA replication, recombination, and repair]
Probab=95.29 E-value=0.065 Score=58.50 Aligned_cols=88 Identities=24% Similarity=0.237 Sum_probs=57.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHH-h---cCC-CCCcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILES-I---TLS-PCDLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~-~---~~~-~~~~~~~~~~~~~l~ 253 (1402)
+.-+++=|+|+.|.||||+|.+++-. ....-..++|++..+.+++.++. ++... + ... +.....-.+.++.+.
T Consensus 58 ~~g~ItEiyG~~gsGKT~lal~~~~~-aq~~g~~a~fIDtE~~l~p~r~~-~l~~~~~d~l~v~~~~~~e~q~~i~~~~~ 135 (279)
T COG0468 58 PRGRITEIYGPESSGKTTLALQLVAN-AQKPGGKAAFIDTEHALDPERAK-QLGVDLLDNLLVSQPDTGEQQLEIAEKLA 135 (279)
T ss_pred ccceEEEEecCCCcchhhHHHHHHHH-hhcCCCeEEEEeCCCCCCHHHHH-HHHHhhhcceeEecCCCHHHHHHHHHHHH
Confidence 55689999999999999999998765 33344478999999999987653 33333 2 111 112222233344444
Q ss_pred HHhcCCeEEEEEeCC
Q 000594 254 EAVFKKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~~k~~LlVlDdv 268 (1402)
.....+--|+|+|.|
T Consensus 136 ~~~~~~i~LvVVDSv 150 (279)
T COG0468 136 RSGAEKIDLLVVDSV 150 (279)
T ss_pred HhccCCCCEEEEecC
Confidence 444445679999998
No 286
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=95.28 E-value=0.014 Score=58.34 Aligned_cols=85 Identities=27% Similarity=0.280 Sum_probs=67.0
Q ss_pred hccCCCcccEEEeccccccccccccc-ccccccceeccCccccccc--hhhhcCCCCcEEecCCccccccCch----hhh
Q 000594 565 LLPKCKKLRVLSLGRYLITEVPVSIG-CLKHLRYLNFSNSWIQCLP--EVITSLFNLEILILSNCWFLLKLPS----SIG 637 (1402)
Q Consensus 565 ~~~~l~~Lr~L~L~~~~i~~lp~~i~-~l~~Lr~L~Ls~~~i~~lp--~~i~~L~~L~~LdLs~~~~~~~lP~----~i~ 637 (1402)
.|+.++.|.+|.|++|+|+.|-+.+. -+.+|..|.|.+|.|.++- ..+..++.|++|.+-+|. ....+. .+.
T Consensus 59 ~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltll~Np-v~~k~~YR~yvl~ 137 (233)
T KOG1644|consen 59 NLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTLLGNP-VEHKKNYRLYVLY 137 (233)
T ss_pred cCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeeecCCc-hhcccCceeEEEE
Confidence 47889999999999999999955554 4567999999999998774 447788899999998884 333332 278
Q ss_pred cccccccccccCc
Q 000594 638 NLVNLHHLDIEGA 650 (1402)
Q Consensus 638 ~L~~L~~L~l~~~ 650 (1402)
++++|++||..+-
T Consensus 138 klp~l~~LDF~kV 150 (233)
T KOG1644|consen 138 KLPSLRTLDFQKV 150 (233)
T ss_pred ecCcceEeehhhh
Confidence 8999999998754
No 287
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.27 E-value=0.0015 Score=67.94 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=19.1
Q ss_pred cCCCcccEEEecccccccccccccccccccceeccCcccccc
Q 000594 567 PKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCL 608 (1402)
Q Consensus 567 ~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~l 608 (1402)
.+++.|.||.|+-|.|+.+. .+..++.|+.|.|+.|.|..+
T Consensus 38 ~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sl 78 (388)
T KOG2123|consen 38 EKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESL 78 (388)
T ss_pred HhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccH
Confidence 34444555555544444441 244444455555544444444
No 288
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.26 E-value=0.079 Score=62.60 Aligned_cols=88 Identities=18% Similarity=0.099 Sum_probs=47.1
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSH-DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
..++|+|+|.+|+||||++.++.......+ ...+..++... .....+.++...+.++.......+...+...+++. .
T Consensus 349 ~G~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~a~d~~~L~~aL~~l-~ 427 (559)
T PRK12727 349 RGGVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHEADSAESLLDLLERL-R 427 (559)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEecccccccHHHHHHHhhcccCceeEecCcHHHHHHHHHHh-c
Confidence 347999999999999999998876432222 23344444321 11222333333333333222223334444444433 3
Q ss_pred CCeEEEEEeCCC
Q 000594 258 KKKFLIVLDDVW 269 (1402)
Q Consensus 258 ~k~~LlVlDdv~ 269 (1402)
+.=+|++|...
T Consensus 428 -~~DLVLIDTaG 438 (559)
T PRK12727 428 -DYKLVLIDTAG 438 (559)
T ss_pred -cCCEEEecCCC
Confidence 34578888874
No 289
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=95.24 E-value=0.11 Score=53.75 Aligned_cols=117 Identities=19% Similarity=0.143 Sum_probs=58.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCC---------------CCCcCchH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLS---------------PCDLKDLN 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~---------------~~~~~~~~ 246 (1402)
.+++|+|..|.|||||++.+.--. ..-...+++.-. +.......+...++.- ......-+
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~---~~~~~~~~~~~~i~~~~q~~~~~~~tv~~~i~~~LS~G~ 103 (178)
T cd03247 29 EKIALLGRSGSGKSTLLQLLTGDL--KPQQGEITLDGV---PVSDLEKALSSLISVLNQRPYLFDTTLRNNLGRRFSGGE 103 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhccC--CCCCCEEEECCE---EHHHHHHHHHhhEEEEccCCeeecccHHHhhcccCCHHH
Confidence 489999999999999999997632 111222222110 1111111111111110 00111112
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccchhhhh
Q 000594 247 SVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 247 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 303 (1402)
...-.+.+.+-.++=++++|+.... +....+.+...+.....+..||++|.+.+...
T Consensus 104 ~qrv~laral~~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~ 161 (178)
T cd03247 104 RQRLALARILLQDAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE 161 (178)
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH
Confidence 2233456666678889999997542 22222233333322223677888888876654
No 290
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=95.23 E-value=0.12 Score=51.10 Aligned_cols=105 Identities=20% Similarity=0.210 Sum_probs=56.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.+++|+|..|.|||||++.+..-. ......+|+.-. ..+..-. +...-+...-.+.+.+..++-
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~~~-------------~~i~~~~-~lS~G~~~rv~laral~~~p~ 90 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGEL--EPDEGIVTWGST-------------VKIGYFE-QLSGGEKMRLALAKLLLENPN 90 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCC--CCCceEEEECCe-------------EEEEEEc-cCCHHHHHHHHHHHHHhcCCC
Confidence 489999999999999999987632 112233333210 0000000 011122223345566667778
Q ss_pred EEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccchhhhhh
Q 000594 262 LIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 262 LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 304 (1402)
++++|+.-.. +....+.+...+... +..||++|.+.+.+..
T Consensus 91 illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~ 132 (144)
T cd03221 91 LLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQ 132 (144)
T ss_pred EEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHH
Confidence 9999987431 223333343333322 2467888877655443
No 291
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=95.21 E-value=0.089 Score=54.06 Aligned_cols=117 Identities=19% Similarity=0.267 Sum_probs=59.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC--CCCHHHHHHHHHHHhcCCCCC------------cCchHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH--DFDVLRISKAILESITLSPCD------------LKDLNS 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~------------~~~~~~ 247 (1402)
.+++|+|..|.|||||.+.++.-. ......+++.-.. ...... ....++.-..+ ...-+.
T Consensus 29 ~~~~l~G~nGsGKstLl~~i~G~~--~~~~G~i~~~g~~~~~~~~~~----~~~~i~~~~~~~~~~~~t~~e~lLS~G~~ 102 (171)
T cd03228 29 EKVAIVGPSGSGKSTLLKLLLRLY--DPTSGEILIDGVDLRDLDLES----LRKNIAYVPQDPFLFSGTIRENILSGGQR 102 (171)
T ss_pred CEEEEECCCCCCHHHHHHHHHcCC--CCCCCEEEECCEEhhhcCHHH----HHhhEEEEcCCchhccchHHHHhhCHHHH
Confidence 589999999999999999998632 1222333322110 001111 11111110000 011112
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccchhhhhh
Q 000594 248 VQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 248 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 304 (1402)
..-.+...+..++-++++|+-... +....+.+...+.....+..||++|.+.+....
T Consensus 103 ~rl~la~al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~ 160 (171)
T cd03228 103 QRIAIARALLRDPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD 160 (171)
T ss_pred HHHHHHHHHhcCCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh
Confidence 223355666678889999997432 222223333333222235678888888766543
No 292
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=95.20 E-value=0.16 Score=51.89 Aligned_cols=118 Identities=13% Similarity=0.075 Sum_probs=59.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccc--cccc--cCcee-EEEeCCCCCHHHHHHHHHHHhcC-CCCCcCchHHHHHHHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK--LTEA--FEPKA-WVCVSHDFDVLRISKAILESITL-SPCDLKDLNSVQLKLKEA 255 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~--~~~~--f~~~~-wv~~~~~~~~~~~~~~i~~~~~~-~~~~~~~~~~~~~~l~~~ 255 (1402)
.+++|+|..|.|||||++.+.... ..+. ++... -..+.+..... -..+.+.+.. .......-+...-.+.+.
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~i~~~~q~~~~~--~~tv~~nl~~~~~~~LS~G~~~rv~lara 105 (166)
T cd03223 28 DRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEGEDLLFLPQRPYLP--LGTLREQLIYPWDDVLSGGEQQRLAFARL 105 (166)
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCCceEEEECCCCccc--cccHHHHhhccCCCCCCHHHHHHHHHHHH
Confidence 489999999999999999998642 1111 11100 01123322111 0122222211 112222223334455666
Q ss_pred hcCCeEEEEEeCCCcC-ChhhHHHhhcccCCCCCCcEEEEEccchhhhh
Q 000594 256 VFKKKFLIVLDDVWSE-RYDLWQALKSPFMAGAPGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 256 l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 303 (1402)
+..++=++++|+--.. +....+.+...+... +..||++|.+.....
T Consensus 106 l~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~~ 152 (166)
T cd03223 106 LLHKPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLWK 152 (166)
T ss_pred HHcCCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHHh
Confidence 6677888899986331 222233333333222 356788887766543
No 293
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=95.18 E-value=0.074 Score=53.40 Aligned_cols=116 Identities=15% Similarity=0.095 Sum_probs=63.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCcee--EEEeCCCCCHHHHHHHHHHHhcCC--CC----CcCc-------hH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA--WVCVSHDFDVLRISKAILESITLS--PC----DLKD-------LN 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~~~~~~~--~~----~~~~-------~~ 246 (1402)
..|-|++..|.||||.|..+.-+.....+.+.+ |+--........++... .+... .. ...+ ..
T Consensus 6 Gli~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~--~~~~~~~g~g~~~~~~~~~~~~~~~~ 83 (173)
T TIGR00708 6 GIIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPH--GVEFQVMGTGFTWETQNREADTAIAK 83 (173)
T ss_pred cEEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhc--CcEEEECCCCCeecCCCcHHHHHHHH
Confidence 477888889999999999887665444444322 33322223333444332 11100 00 0011 11
Q ss_pred HHHHHHHHHhcCCe-EEEEEeCCCc---CChhhHHHhhcccCCCCCCcEEEEEccch
Q 000594 247 SVQLKLKEAVFKKK-FLIVLDDVWS---ERYDLWQALKSPFMAGAPGSRIIVTTRSM 299 (1402)
Q Consensus 247 ~~~~~l~~~l~~k~-~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 299 (1402)
+.....++.+...+ =++|||.+-. -..-..+.+...+.....+..||+|-|+.
T Consensus 84 ~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 84 AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 12233445554444 4999999832 11123345666666666778999999985
No 294
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=95.17 E-value=0.15 Score=57.11 Aligned_cols=52 Identities=25% Similarity=0.300 Sum_probs=36.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHh
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESI 235 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~ 235 (1402)
.++.|.|.+|+||||+|.+++......+=..++|++... +..++...+...+
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~E~--~~~~~~~r~~~~~ 82 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISLEE--PVVRTARRLLGQY 82 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEccc--CHHHHHHHHHHHH
Confidence 588899999999999999987654333224577887765 3455565555543
No 295
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.16 E-value=0.14 Score=57.94 Aligned_cols=91 Identities=15% Similarity=0.189 Sum_probs=55.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
.+.++++++|+.|+||||++..++....... ..+.+|+.... ....+-++...+.++.+.....+..++...+...-.
T Consensus 204 ~~~~ii~lvGptGvGKTTt~akLA~~l~~~g-~~V~lItaDtyR~gAveQLk~yae~lgvpv~~~~dp~dL~~al~~l~~ 282 (407)
T PRK12726 204 SNHRIISLIGQTGVGKTTTLVKLGWQLLKQN-RTVGFITTDTFRSGAVEQFQGYADKLDVELIVATSPAELEEAVQYMTY 282 (407)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHHHcC-CeEEEEeCCccCccHHHHHHHHhhcCCCCEEecCCHHHHHHHHHHHHh
Confidence 3468999999999999999999886532222 23556665422 223445666666665543333455555555544321
Q ss_pred -CCeEEEEEeCCCc
Q 000594 258 -KKKFLIVLDDVWS 270 (1402)
Q Consensus 258 -~k~~LlVlDdv~~ 270 (1402)
+..=+|++|-...
T Consensus 283 ~~~~D~VLIDTAGr 296 (407)
T PRK12726 283 VNCVDHILIDTVGR 296 (407)
T ss_pred cCCCCEEEEECCCC
Confidence 3456788888744
No 296
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=95.15 E-value=0.027 Score=59.30 Aligned_cols=110 Identities=13% Similarity=0.164 Sum_probs=59.6
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHH-HHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVL-RISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+|.|+|+.|.||||++..+... ........++. +.+..... .-...+..+-. ...+.......++..++..+=
T Consensus 3 lilI~GptGSGKTTll~~ll~~-~~~~~~~~i~t-~e~~~E~~~~~~~~~i~q~~----vg~~~~~~~~~i~~aLr~~pd 76 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDY-INKNKTHHILT-IEDPIEFVHESKRSLINQRE----VGLDTLSFENALKAALRQDPD 76 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHH-hhhcCCcEEEE-EcCCccccccCccceeeecc----cCCCccCHHHHHHHHhcCCcC
Confidence 7899999999999999987764 32233334433 22221110 00001111100 011123345567777877788
Q ss_pred EEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhh
Q 000594 262 LIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~ 303 (1402)
.+++|++.+. +.+....... ..|..|+.|+-..+++.
T Consensus 77 ~ii~gEird~--e~~~~~l~~a---~~G~~v~~t~Ha~~~~~ 113 (198)
T cd01131 77 VILVGEMRDL--ETIRLALTAA---ETGHLVMSTLHTNSAAK 113 (198)
T ss_pred EEEEcCCCCH--HHHHHHHHHH---HcCCEEEEEecCCcHHH
Confidence 9999999543 4444333322 24556777776655443
No 297
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=95.10 E-value=0.045 Score=55.54 Aligned_cols=79 Identities=16% Similarity=0.269 Sum_probs=43.0
Q ss_pred EEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC--CeE
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK--KKF 261 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~--k~~ 261 (1402)
+.|.|.+|.|||++|.++... ....++++.-.+.++.+ ..+.|.......+...... +....+.+.+.. +.-
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~----~~~~~~y~at~~~~d~e-m~~rI~~H~~~R~~~w~t~-E~~~~l~~~l~~~~~~~ 75 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAE----LGGPVTYIATAEAFDDE-MAERIARHRKRRPAHWRTI-ETPRDLVSALKELDPGD 75 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHh----cCCCeEEEEccCcCCHH-HHHHHHHHHHhCCCCceEe-ecHHHHHHHHHhcCCCC
Confidence 678999999999999997653 22356677666666542 3333333222222211111 112223333321 233
Q ss_pred EEEEeCC
Q 000594 262 LIVLDDV 268 (1402)
Q Consensus 262 LlVlDdv 268 (1402)
.+++|.+
T Consensus 76 ~VLIDcl 82 (169)
T cd00544 76 VVLIDCL 82 (169)
T ss_pred EEEEEcH
Confidence 7999997
No 298
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=95.08 E-value=0.088 Score=59.78 Aligned_cols=59 Identities=22% Similarity=0.182 Sum_probs=42.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-cc----cccCceeEEEeCCCCCHHHHHHHHHHHhcCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LT----EAFEPKAWVCVSHDFDVLRISKAILESITLS 238 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 238 (1402)
..-+++-|+|.+|+|||+|+.+++-.. .. ..-..++||+....|++.++.+ +++.++..
T Consensus 124 ~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF~peRl~~-ia~~~g~d 187 (344)
T PLN03187 124 ETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTFRPDRIVP-IAERFGMD 187 (344)
T ss_pred CCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCCCHHHHHH-HHHHcCCC
Confidence 344789999999999999999886332 11 1124678999999999888654 56666543
No 299
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=95.07 E-value=0.15 Score=59.04 Aligned_cols=88 Identities=15% Similarity=0.199 Sum_probs=52.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcccccc--ccC-ceeEEEeCCCCC--HHHHHHHHHHHhcCCCCCcCchHHHHHHHHH
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTE--AFE-PKAWVCVSHDFD--VLRISKAILESITLSPCDLKDLNSVQLKLKE 254 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~--~f~-~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~ 254 (1402)
..++|.++|+.|+||||.+..++...... .-. .+..++.. .+. ...-++...+.++.+-....+..++...+.+
T Consensus 173 ~~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~D-t~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L~~ 251 (388)
T PRK12723 173 KKRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITID-NYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEITQ 251 (388)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEecc-CccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHHHH
Confidence 35799999999999999999888653211 122 33344443 333 2333566666666543333444555555544
Q ss_pred HhcCCeEEEEEeCCCc
Q 000594 255 AVFKKKFLIVLDDVWS 270 (1402)
Q Consensus 255 ~l~~k~~LlVlDdv~~ 270 (1402)
. .+.-+|++|-...
T Consensus 252 ~--~~~DlVLIDTaGr 265 (388)
T PRK12723 252 S--KDFDLVLVDTIGK 265 (388)
T ss_pred h--CCCCEEEEcCCCC
Confidence 3 4456888998843
No 300
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=95.05 E-value=0.028 Score=57.13 Aligned_cols=80 Identities=11% Similarity=0.117 Sum_probs=42.5
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCc---CchHHHHHHHHHHhcCC
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDL---KDLNSVQLKLKEAVFKK 259 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~---~~~~~~~~~l~~~l~~k 259 (1402)
++.|.|.+|.||||+|..+.... .. ..+++.-... ...+..+.|.......+..- .....+...+.....+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~-~~---~~~~iat~~~-~~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~- 76 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQS-GL---QVLYIATAQP-FDDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAP- 76 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHc-CC---CcEeCcCCCC-ChHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCC-
Confidence 68899999999999999987542 11 1233332332 23344455543332222211 1112344445443333
Q ss_pred eEEEEEeCC
Q 000594 260 KFLIVLDDV 268 (1402)
Q Consensus 260 ~~LlVlDdv 268 (1402)
.-++|+|.+
T Consensus 77 ~~~VlID~L 85 (170)
T PRK05800 77 GRCVLVDCL 85 (170)
T ss_pred CCEEEehhH
Confidence 337899987
No 301
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=95.02 E-value=0.15 Score=52.35 Aligned_cols=103 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEE------eCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC------VSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEA 255 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~ 255 (1402)
.+++|+|..|.|||||++.+..-. ......+++. +.+... ...-+...-.+.+.
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~i~~~~q~~~------------------LSgGq~qrv~lara 85 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQL--IPNGDNDEWDGITPVYKPQYID------------------LSGGELQRVAIAAA 85 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCC--CCCCcEEEECCEEEEEEcccCC------------------CCHHHHHHHHHHHH
Confidence 489999999999999999987532 1112222221 111111 11122233345666
Q ss_pred hcCCeEEEEEeCCCcC-ChhhHHHhhcccCCC--CCCcEEEEEccchhhhhh
Q 000594 256 VFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG--APGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 256 l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~ 304 (1402)
+..++-++++|+--.. +....+.+...+... ..+..||++|.+......
T Consensus 86 l~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~ 137 (177)
T cd03222 86 LLRNATFYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDY 137 (177)
T ss_pred HhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHH
Confidence 6678889999987432 222222233332211 123567777777655443
No 302
>COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms]
Probab=95.01 E-value=0.2 Score=52.71 Aligned_cols=61 Identities=13% Similarity=0.156 Sum_probs=39.1
Q ss_pred HHHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCC--CCCcEEEEEccchhhhhhcC
Q 000594 246 NSVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG--APGSRIIVTTRSMDVASTMG 306 (1402)
Q Consensus 246 ~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~--~~gs~iivTtR~~~v~~~~~ 306 (1402)
++-...+.+.|-..+-+|+.|+--.. +.+.-+.+...+... ..|..||+.|-+..+|..+.
T Consensus 147 qqQRVAIARAL~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA~~~d 210 (226)
T COG1136 147 QQQRVAIARALINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELAKYAD 210 (226)
T ss_pred HHHHHHHHHHHhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHhCC
Confidence 34445678888899999999975221 112223333333322 35788999999999998753
No 303
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=94.99 E-value=0.1 Score=59.09 Aligned_cols=58 Identities=21% Similarity=0.126 Sum_probs=40.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-ccc----ccCceeEEEeCCCCCHHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LTE----AFEPKAWVCVSHDFDVLRISKAILESITL 237 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 237 (1402)
....++.|+|.+|+||||+|..++... ... .-..++|++....++..+ +.++++.++.
T Consensus 94 ~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~~f~~~R-l~~ia~~~~~ 156 (316)
T TIGR02239 94 ETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEGTFRPER-LLAIAERYGL 156 (316)
T ss_pred CCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCCCCCHHH-HHHHHHHcCC
Confidence 345799999999999999999887532 111 123568999888888776 3445555543
No 304
>PRK00625 shikimate kinase; Provisional
Probab=94.98 E-value=0.13 Score=52.38 Aligned_cols=22 Identities=27% Similarity=0.398 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.|.++||+|+||||+|+.+.+.
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~ 23 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKF 23 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998765
No 305
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=94.95 E-value=0.028 Score=59.00 Aligned_cols=106 Identities=18% Similarity=0.215 Sum_probs=52.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHH-h----
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEA-V---- 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~-l---- 256 (1402)
+++.|.|.+|.||||+++.+........ ..+.+......- ...+.+..+.. ...+.......... .
T Consensus 19 ~~~~l~G~aGtGKT~~l~~~~~~~~~~g--~~v~~~apT~~A----a~~L~~~~~~~---a~Ti~~~l~~~~~~~~~~~~ 89 (196)
T PF13604_consen 19 RVSVLQGPAGTGKTTLLKALAEALEAAG--KRVIGLAPTNKA----AKELREKTGIE---AQTIHSFLYRIPNGDDEGRP 89 (196)
T ss_dssp SEEEEEESTTSTHHHHHHHHHHHHHHTT----EEEEESSHHH----HHHHHHHHTS----EEEHHHHTTEECCEECCSSC
T ss_pred eEEEEEECCCCCHHHHHHHHHHHHHhCC--CeEEEECCcHHH----HHHHHHhhCcc---hhhHHHHHhcCCcccccccc
Confidence 5888999999999999999876432222 233333222212 22233332211 11111100000000 0
Q ss_pred -cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc
Q 000594 257 -FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 257 -~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
..++-+||+|++...+...+..+...... .|+|||+.--.
T Consensus 90 ~~~~~~vliVDEasmv~~~~~~~ll~~~~~--~~~klilvGD~ 130 (196)
T PF13604_consen 90 ELPKKDVLIVDEASMVDSRQLARLLRLAKK--SGAKLILVGDP 130 (196)
T ss_dssp C-TSTSEEEESSGGG-BHHHHHHHHHHS-T---T-EEEEEE-T
T ss_pred cCCcccEEEEecccccCHHHHHHHHHHHHh--cCCEEEEECCc
Confidence 12345999999977766677777766654 57788876543
No 306
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=94.94 E-value=0.011 Score=62.01 Aligned_cols=80 Identities=25% Similarity=0.231 Sum_probs=54.8
Q ss_pred cccccccceeccCccccccchhhhcCCCCcEEecCCc--cccccCchhhhcccccccccccCcccccccccCc---cccc
Q 000594 590 GCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNC--WFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGM---KELK 664 (1402)
Q Consensus 590 ~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~--~~~~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i---~~L~ 664 (1402)
-.+..|..|++.+..++.+ ..+-.|++|++|++|.| +....++.-..++++|++|++++|+ ++. +..+ .++.
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~-lstl~pl~~l~ 116 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNK-IKD-LSTLRPLKELE 116 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCc-ccc-ccccchhhhhc
Confidence 3445666666766666555 34557899999999999 6666777767788999999999998 443 3333 3344
Q ss_pred ccccccce
Q 000594 665 CLRTLTNF 672 (1402)
Q Consensus 665 ~L~~L~~~ 672 (1402)
+|..|+.+
T Consensus 117 nL~~Ldl~ 124 (260)
T KOG2739|consen 117 NLKSLDLF 124 (260)
T ss_pred chhhhhcc
Confidence 44444443
No 307
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=94.90 E-value=0.086 Score=56.66 Aligned_cols=77 Identities=19% Similarity=0.307 Sum_probs=45.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccc-cc--cccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK-LT--EAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~-~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
|+|.++|++|.|||+|.+++++.. ++ +.|....-+-+. ...++......-+ +-...+.++|.+.+.+
T Consensus 178 RliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin----shsLFSKWFsESg------KlV~kmF~kI~ELv~d 247 (423)
T KOG0744|consen 178 RLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN----SHSLFSKWFSESG------KLVAKMFQKIQELVED 247 (423)
T ss_pred eEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe----hhHHHHHHHhhhh------hHHHHHHHHHHHHHhC
Confidence 799999999999999999999875 32 344433334332 2233333322211 2234445556666654
Q ss_pred Ce--EEEEEeCC
Q 000594 259 KK--FLIVLDDV 268 (1402)
Q Consensus 259 k~--~LlVlDdv 268 (1402)
+. +.+.+|.|
T Consensus 248 ~~~lVfvLIDEV 259 (423)
T KOG0744|consen 248 RGNLVFVLIDEV 259 (423)
T ss_pred CCcEEEEEeHHH
Confidence 44 45567888
No 308
>PRK08233 hypothetical protein; Provisional
Probab=94.90 E-value=0.065 Score=55.91 Aligned_cols=23 Identities=30% Similarity=0.588 Sum_probs=21.3
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+|+|.|.+|+||||+|+.++..
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~ 26 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHK 26 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhh
Confidence 69999999999999999999864
No 309
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=94.88 E-value=0.084 Score=53.67 Aligned_cols=116 Identities=17% Similarity=0.119 Sum_probs=60.8
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC--CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH--DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKK 259 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k 259 (1402)
.+++|+|..|.|||||.+.++--. ......+++.-.. ..+..+..+ ..++.-. +...-+...-.+.+.+-.+
T Consensus 27 e~~~l~G~nGsGKSTLl~~i~G~~--~~~~G~v~~~g~~~~~~~~~~~~~---~~i~~~~-qLS~G~~qrl~laral~~~ 100 (163)
T cd03216 27 EVHALLGENGAGKSTLMKILSGLY--KPDSGEILVDGKEVSFASPRDARR---AGIAMVY-QLSVGERQMVEIARALARN 100 (163)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEECCcCCHHHHHh---cCeEEEE-ecCHHHHHHHHHHHHHhcC
Confidence 489999999999999999988632 2223344432111 111111111 1111111 1222223334456666778
Q ss_pred eEEEEEeCCCcC-ChhhHHHhhcccCCC-CCCcEEEEEccchhhhh
Q 000594 260 KFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 260 ~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~ 303 (1402)
+-++++|+.-.. +....+.+...+... ..|..||++|.+.+...
T Consensus 101 p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~ 146 (163)
T cd03216 101 ARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVF 146 (163)
T ss_pred CCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHH
Confidence 889999997432 222333333333221 23667888888766443
No 310
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=94.84 E-value=0.14 Score=58.47 Aligned_cols=57 Identities=18% Similarity=0.230 Sum_probs=40.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcccc-ccc----cCceeEEEeCCCCCHHHHHHHHHHHhc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEA----FEPKAWVCVSHDFDVLRISKAILESIT 236 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~----f~~~~wv~~~~~~~~~~~~~~i~~~~~ 236 (1402)
+...++-|+|.+|+|||++|.+++.... ... =..++||+..+.+++.++. ++++.++
T Consensus 100 ~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~f~~~rl~-~~~~~~g 161 (317)
T PRK04301 100 ETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGTFRPERIE-QMAEALG 161 (317)
T ss_pred cCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCCcCHHHHH-HHHHHcC
Confidence 3457999999999999999999875431 111 1368899999988887754 4444444
No 311
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=94.81 E-value=0.38 Score=49.28 Aligned_cols=123 Identities=20% Similarity=0.242 Sum_probs=68.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEe-------------------CCCCC-------------------
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCV-------------------SHDFD------------------- 223 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~-------------------~~~~~------------------- 223 (1402)
.|++|+|++|.|||||.+.+.. ....=...+||.- -|.|+
T Consensus 29 evv~iiGpSGSGKSTlLRclN~--LE~~~~G~I~i~g~~~~~~~~~~~~R~~vGmVFQ~fnLFPHlTvleNv~lap~~v~ 106 (240)
T COG1126 29 EVVVIIGPSGSGKSTLLRCLNG--LEEPDSGSITVDGEDVGDKKDILKLRRKVGMVFQQFNLFPHLTVLENVTLAPVKVK 106 (240)
T ss_pred CEEEEECCCCCCHHHHHHHHHC--CcCCCCceEEECCEeccchhhHHHHHHhcCeecccccccccchHHHHHHhhhHHHc
Confidence 4999999999999999999754 2222223344431 12221
Q ss_pred ------HHHHHHHHHHHhcCCCC------CcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCC-CCCC
Q 000594 224 ------VLRISKAILESITLSPC------DLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPG 289 (1402)
Q Consensus 224 ------~~~~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~g 289 (1402)
.++...++++.++.... ....-++-...|.+.|.=++-++.+|..-+. |++...++...+.. ...|
T Consensus 107 ~~~k~eA~~~A~~lL~~VGL~~ka~~yP~qLSGGQqQRVAIARALaM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eG 186 (240)
T COG1126 107 KLSKAEAREKALELLEKVGLADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEG 186 (240)
T ss_pred CCCHHHHHHHHHHHHHHcCchhhhhhCccccCcHHHHHHHHHHHHcCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcC
Confidence 23344455555554321 1122233344577888888889999998553 33333333333322 2356
Q ss_pred cEEEEEccchhhhhhcC
Q 000594 290 SRIIVTTRSMDVASTMG 306 (1402)
Q Consensus 290 s~iivTtR~~~v~~~~~ 306 (1402)
-..|+.|-....|..+.
T Consensus 187 mTMivVTHEM~FAr~Va 203 (240)
T COG1126 187 MTMIIVTHEMGFAREVA 203 (240)
T ss_pred CeEEEEechhHHHHHhh
Confidence 66677776655555443
No 312
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=94.77 E-value=0.11 Score=56.62 Aligned_cols=87 Identities=17% Similarity=0.158 Sum_probs=53.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC------------------
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC------------------ 240 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~------------------ 240 (1402)
+.-.++.|+|.+|+|||++|.++.....+ +=..++|++..+. ..++.+++ ++++....
T Consensus 23 ~~g~~~~i~G~~GsGKt~l~~~~~~~~~~-~g~~~~y~~~e~~--~~~~~~~~-~~~g~~~~~~~~~g~l~i~~~~~~~~ 98 (234)
T PRK06067 23 PFPSLILIEGDHGTGKSVLSQQFVYGALK-QGKKVYVITTENT--SKSYLKQM-ESVKIDISDFFLWGYLRIFPLNTEGF 98 (234)
T ss_pred cCCcEEEEECCCCCChHHHHHHHHHHHHh-CCCEEEEEEcCCC--HHHHHHHH-HHCCCChhHHHhCCCceEEecccccc
Confidence 44579999999999999999998654333 2345778888654 34444443 22321110
Q ss_pred --CcCchHHHHHHHHHHhcC-CeEEEEEeCCC
Q 000594 241 --DLKDLNSVQLKLKEAVFK-KKFLIVLDDVW 269 (1402)
Q Consensus 241 --~~~~~~~~~~~l~~~l~~-k~~LlVlDdv~ 269 (1402)
...+.+.+...+.+.+.. +.-++|+|.+-
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t 130 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLT 130 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHH
Confidence 012234555666666653 55689999974
No 313
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=94.74 E-value=0.1 Score=54.86 Aligned_cols=80 Identities=20% Similarity=0.114 Sum_probs=43.1
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCc---eeEEEeCCCCCHHHHHHHHHHHhcC----CCCCcCchHHHHHHHHHH
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEP---KAWVCVSHDFDVLRISKAILESITL----SPCDLKDLNSVQLKLKEA 255 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~---~~wv~~~~~~~~~~~~~~i~~~~~~----~~~~~~~~~~~~~~l~~~ 255 (1402)
||+|.|.+|+||||+|+++.....+....+ ...+.. ..+....-....-..... .....-+.+.+...++..
T Consensus 1 IIgI~G~sgSGKTTla~~L~~~L~~~~~~~~~~~~~~~~-d~~~~~~~~~~~~~~~~~~~~~~~p~a~d~~~l~~~l~~L 79 (194)
T PF00485_consen 1 IIGIAGPSGSGKTTLAKRLAQILNKRGIPAMEMDIILSL-DDFYDDYHLRDRKGRGENRYNFDHPDAFDFDLLKEDLKAL 79 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHTTCTTTCCCSEEEEEG-GGGBHHHHHHHHHHHCTTTSSTTSGGGBSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCccCcCccceeEEEee-cccccccchhhHhhccccccCCCCccccCHHHHHHHHHHH
Confidence 799999999999999999987533333332 222222 222222221122121111 111334566677777766
Q ss_pred hcCCeEEE
Q 000594 256 VFKKKFLI 263 (1402)
Q Consensus 256 l~~k~~Ll 263 (1402)
..++.+-+
T Consensus 80 ~~g~~i~~ 87 (194)
T PF00485_consen 80 KNGGSIEI 87 (194)
T ss_dssp HTTSCEEE
T ss_pred hCCCcccc
Confidence 66665444
No 314
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=94.73 E-value=0.019 Score=35.60 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=18.9
Q ss_pred cccEEEeccccccccccccccc
Q 000594 571 KLRVLSLGRYLITEVPVSIGCL 592 (1402)
Q Consensus 571 ~Lr~L~L~~~~i~~lp~~i~~l 592 (1402)
+|++|||++|.++.+|++|++|
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~l 22 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSNL 22 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT-
T ss_pred CccEEECCCCcCEeCChhhcCC
Confidence 5899999999999999888764
No 315
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=94.73 E-value=0.15 Score=55.86 Aligned_cols=49 Identities=29% Similarity=0.405 Sum_probs=37.7
Q ss_pred CCccccchHHHHH---HHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 153 EPAVYGRDEDKAR---ILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 153 ~~~~vGr~~~~~~---l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
...+||..+.++. |+++..+..- .-+.|.|+|++|.|||+||..+.+..
T Consensus 38 ~dG~VGQ~~AReAaGvIv~mik~gk~----aGrgiLi~GppgTGKTAlA~gIa~eL 89 (450)
T COG1224 38 GDGLVGQEEAREAAGVIVKMIKQGKM----AGRGILIVGPPGTGKTALAMGIAREL 89 (450)
T ss_pred CCcccchHHHHHhhhHHHHHHHhCcc----cccEEEEECCCCCcHHHHHHHHHHHh
Confidence 4568998876654 6677655432 23789999999999999999999764
No 316
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=94.71 E-value=0.15 Score=59.93 Aligned_cols=89 Identities=16% Similarity=0.150 Sum_probs=46.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEEeCCCCC--HHHHHHHHHHHhcCCCC---CcCchHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSHDFD--VLRISKAILESITLSPC---DLKDLNSVQLKL 252 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~---~~~~~~~~~~~l 252 (1402)
..+.++.++|.+|+||||.|..++.... +..+ .++-|+. +.+. ..+-++...++++.+.. ...+..++....
T Consensus 97 ~~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~-kV~lV~~-D~~R~~a~~QL~~~a~~~gvp~~~~~~~~~P~~i~~~a 174 (428)
T TIGR00959 97 KPPTVILMVGLQGSGKTTTCGKLAYYLKKKQGK-KVLLVAC-DLYRPAAIEQLKVLGQQVGVPVFALGKGQSPVEIARRA 174 (428)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhCCC-eEEEEec-cccchHHHHHHHHHHHhcCCceEecCCCCCHHHHHHHH
Confidence 3468999999999999999988876432 1222 2333333 2232 23334445555544321 112233333333
Q ss_pred HHHhcCCeE-EEEEeCCC
Q 000594 253 KEAVFKKKF-LIVLDDVW 269 (1402)
Q Consensus 253 ~~~l~~k~~-LlVlDdv~ 269 (1402)
.+....+.| ++|+|-..
T Consensus 175 l~~~~~~~~DvVIIDTaG 192 (428)
T TIGR00959 175 LEYAKENGFDVVIVDTAG 192 (428)
T ss_pred HHHHHhcCCCEEEEeCCC
Confidence 333333444 77777764
No 317
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=94.70 E-value=0.16 Score=50.71 Aligned_cols=22 Identities=41% Similarity=0.637 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
||.|+|.+|.||||+|+.+...
T Consensus 1 ~i~i~G~~GsGKSTla~~L~~~ 22 (149)
T cd02027 1 VIWLTGLSGSGKSTIARALEEK 22 (149)
T ss_pred CEEEEcCCCCCHHHHHHHHHHH
Confidence 5789999999999999998764
No 318
>PRK10867 signal recognition particle protein; Provisional
Probab=94.66 E-value=0.1 Score=61.18 Aligned_cols=25 Identities=40% Similarity=0.457 Sum_probs=21.5
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+.+|.++|.+|+||||.|..++..
T Consensus 99 ~p~vI~~vG~~GsGKTTtaakLA~~ 123 (433)
T PRK10867 99 PPTVIMMVGLQGAGKTTTAGKLAKY 123 (433)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHH
Confidence 4579999999999999988887754
No 319
>COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism]
Probab=94.66 E-value=0.2 Score=53.49 Aligned_cols=120 Identities=18% Similarity=0.249 Sum_probs=67.6
Q ss_pred EEEEEEccCCChHHHHHHHHHccc--cc---ccc----------CceeEEEeCCCC------CH----------------
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK--LT---EAF----------EPKAWVCVSHDF------DV---------------- 224 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~--~~---~~f----------~~~~wv~~~~~~------~~---------------- 224 (1402)
.+++|+|+.|.|||||.+.+.--. .+ ..| ..+.||.=...+ ++
T Consensus 31 ~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~ 110 (254)
T COG1121 31 EITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRRKRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFR 110 (254)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccccCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccc
Confidence 599999999999999999997511 00 011 134455311111 11
Q ss_pred ------HHHHHHHHHHhcCCCCC------cCchHHHHHHHHHHhcCCeEEEEEeCCCc----CChhhHHHhhcccCCCCC
Q 000594 225 ------LRISKAILESITLSPCD------LKDLNSVQLKLKEAVFKKKFLIVLDDVWS----ERYDLWQALKSPFMAGAP 288 (1402)
Q Consensus 225 ------~~~~~~i~~~~~~~~~~------~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~~~~~l~~~~~ 288 (1402)
.+...+.+++++...-. ...-+.-...+.+.|..++=|+|||.--. ......-.+...+...
T Consensus 111 ~~~~~d~~~v~~aL~~Vgm~~~~~r~i~~LSGGQ~QRV~lARAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~e-- 188 (254)
T COG1121 111 RLNKKDKEKVDEALERVGMEDLRDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQE-- 188 (254)
T ss_pred cccHHHHHHHHHHHHHcCchhhhCCcccccCcHHHHHHHHHHHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHC--
Confidence 24445555555543211 11112223356788899999999997422 1122233344444443
Q ss_pred CcEEEEEccchhhhh
Q 000594 289 GSRIIVTTRSMDVAS 303 (1402)
Q Consensus 289 gs~iivTtR~~~v~~ 303 (1402)
|..||++|-+-....
T Consensus 189 g~tIl~vtHDL~~v~ 203 (254)
T COG1121 189 GKTVLMVTHDLGLVM 203 (254)
T ss_pred CCEEEEEeCCcHHhH
Confidence 888999998855443
No 320
>PRK00889 adenylylsulfate kinase; Provisional
Probab=94.65 E-value=0.14 Score=52.99 Aligned_cols=25 Identities=28% Similarity=0.387 Sum_probs=22.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHccc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
..+|.|+|++|.||||+|++++...
T Consensus 4 g~~i~~~G~~GsGKST~a~~la~~l 28 (175)
T PRK00889 4 GVTVWFTGLSGAGKTTIARALAEKL 28 (175)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHH
Confidence 4699999999999999999998753
No 321
>PRK07667 uridine kinase; Provisional
Probab=94.65 E-value=0.043 Score=57.60 Aligned_cols=38 Identities=16% Similarity=0.369 Sum_probs=29.3
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 163 KARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+.|.+.+.... ++..+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~~~~~~~~~~~----~~~~iIgI~G~~gsGKStla~~L~~~ 40 (193)
T PRK07667 3 TNELINIMKKHK----ENRFILGIDGLSRSGKTTFVANLKEN 40 (193)
T ss_pred HHHHHHHHHhcC----CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 355666665443 34489999999999999999998864
No 322
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=94.63 E-value=0.13 Score=58.89 Aligned_cols=47 Identities=19% Similarity=0.275 Sum_probs=36.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..++|+...+.++.+.+...... ..-|.|+|..|+||+++|+.++..
T Consensus 6 ~~liG~S~~~~~~~~~i~~~a~~----~~pVlI~GE~GtGK~~lA~~iH~~ 52 (326)
T PRK11608 6 DNLLGEANSFLEVLEQVSRLAPL----DKPVLIIGERGTGKELIASRLHYL 52 (326)
T ss_pred CccEECCHHHHHHHHHHHHHhCC----CCCEEEECCCCCcHHHHHHHHHHh
Confidence 35899999999888887654322 134789999999999999998753
No 323
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=0.0077 Score=62.84 Aligned_cols=104 Identities=19% Similarity=0.163 Sum_probs=80.9
Q ss_pred CCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCch--hhhcccccccc
Q 000594 568 KCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPS--SIGNLVNLHHL 645 (1402)
Q Consensus 568 ~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~--~i~~L~~L~~L 645 (1402)
.+.+.+.|++-||.++.|. .+.+++.|++|.||-|+|+.| ..+...++|+.|.|+.|. +..+-+ -+.+|++|+.|
T Consensus 17 dl~~vkKLNcwg~~L~DIs-ic~kMp~lEVLsLSvNkIssL-~pl~rCtrLkElYLRkN~-I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDDIS-ICEKMPLLEVLSLSVNKISSL-APLQRCTRLKELYLRKNC-IESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHHhhhhcccCCCccHHH-HHHhcccceeEEeeccccccc-hhHHHHHHHHHHHHHhcc-cccHHHHHHHhcCchhhhH
Confidence 3556778899999998873 456899999999999999999 568899999999999984 444433 36788999999
Q ss_pred cccCcccccccccC-----cccccccccccceec
Q 000594 646 DIEGAYQLCELPLG-----MKELKCLRTLTNFIV 674 (1402)
Q Consensus 646 ~l~~~~~l~~lp~~-----i~~L~~L~~L~~~~~ 674 (1402)
-|..|.-...-+.. +.-|++|+.|+...+
T Consensus 94 WL~ENPCc~~ag~nYR~~VLR~LPnLkKLDnv~V 127 (388)
T KOG2123|consen 94 WLDENPCCGEAGQNYRRKVLRVLPNLKKLDNVPV 127 (388)
T ss_pred hhccCCcccccchhHHHHHHHHcccchhccCccc
Confidence 99887644444432 567889999986544
No 324
>PTZ00494 tuzin-like protein; Provisional
Probab=94.61 E-value=1.9 Score=49.19 Aligned_cols=169 Identities=11% Similarity=0.142 Sum_probs=99.9
Q ss_pred CCCCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 151 TSEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 151 ~~~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
.....+|.|++|-..+.+.|...+. ..++++.+.|.-|.||++|.+...... + -..++|++...- +.++.
T Consensus 368 a~~~~~V~R~~eE~~vRqvL~qld~---aHPRIvV~TG~~GcGKSslcRsAvrkE---~-~paV~VDVRg~E---DtLrs 437 (664)
T PTZ00494 368 AAEAFEVRREDEEALVRSVLTQMAP---SHPRIVALAGGSGGGRCVPCRRAVRVE---G-VALVHVDVGGTE---DTLRS 437 (664)
T ss_pred cccccccchhhHHHHHHHHHhhccC---CCCcEEEEecCCCCCchHHHHHHHHHc---C-CCeEEEEecCCc---chHHH
Confidence 3456789999999999888877654 567999999999999999999876542 1 235677777654 45778
Q ss_pred HHHHhcCCCCCc-Cc-hHHHHHHH---HHHhcCCeEEEEEeCCCcCCh-hhHHHhhcccCCCCCCcEEEEEccchhhhhh
Q 000594 231 ILESITLSPCDL-KD-LNSVQLKL---KEAVFKKKFLIVLDDVWSERY-DLWQALKSPFMAGAPGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 231 i~~~~~~~~~~~-~~-~~~~~~~l---~~~l~~k~~LlVlDdv~~~~~-~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 304 (1402)
+.+.++.+.-+. .| ++-+.+.. +....++.-+||+-==...+. ..+.+. ..+.....-++|++----+.+...
T Consensus 438 VVKALgV~nve~CGDlLdFI~ea~~~A~~~~~g~~P~lVlkLREGssL~RVYnE~-vaLacDrRlCHvv~EVplESLT~~ 516 (664)
T PTZ00494 438 VVRALGVSNVEVCGDLLGFVEEAMRGATVKASDGVPFLVMRLREGSDLGRVYGEV-VSLVSDCQACHIVLAVPMKALTPL 516 (664)
T ss_pred HHHHhCCCChhhhccHHHHHHHHHHHHHHhcCCCCCEEEEEeccCCcHHHHHHHH-HHHHccchhheeeeechHhhhchh
Confidence 888888765432 12 22222222 223456666666642211111 112221 223334456777775443332211
Q ss_pred cCCC-cceeecccCCChhhHHHHHHHh
Q 000594 305 MGSG-KNYELELKLLSDDDRWSVFVNH 330 (1402)
Q Consensus 305 ~~~~-~~~~~~l~~L~~~~~~~lf~~~ 330 (1402)
...- ..-.|-+++++.++|.+.-...
T Consensus 517 n~~LPRLDFy~VPnFSr~QAf~YtqH~ 543 (664)
T PTZ00494 517 NVSSRRLDFYCIPPFSRRQAFAYAEHT 543 (664)
T ss_pred hccCccceeEecCCcCHHHHHHHHhcc
Confidence 1111 1122348999999998877554
No 325
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.61 E-value=0.36 Score=56.73 Aligned_cols=97 Identities=16% Similarity=0.262 Sum_probs=60.2
Q ss_pred CccccchHHHHHHHHHHhcCCC------CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDP------SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~------~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
.++=|.+..+.++.+++..-.. -+...++=|.++|++|.|||.||+++++.. .-. ++.++..
T Consensus 190 ~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel-~vP-----f~~isAp------ 257 (802)
T KOG0733|consen 190 SDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGEL-GVP-----FLSISAP------ 257 (802)
T ss_pred hhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhc-CCc-----eEeecch------
Confidence 3466788888887777654211 112345678899999999999999999863 222 2333321
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCC
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVW 269 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~ 269 (1402)
+|+..+.+ ...+.+.+.+.+.-..-++++++|++.
T Consensus 258 --eivSGvSG-----ESEkkiRelF~~A~~~aPcivFiDeID 292 (802)
T KOG0733|consen 258 --EIVSGVSG-----ESEKKIRELFDQAKSNAPCIVFIDEID 292 (802)
T ss_pred --hhhcccCc-----ccHHHHHHHHHHHhccCCeEEEeeccc
Confidence 22222221 223344445555667889999999984
No 326
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=94.58 E-value=0.19 Score=57.32 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=42.4
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-cc----cccCceeEEEeCCCCCHHHHHHHHHHHhcCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-LT----EAFEPKAWVCVSHDFDVLRISKAILESITLS 238 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 238 (1402)
....++-|+|.+|+|||++|..++-.. .. ..-..++||+....|+++++ .+|++.++..
T Consensus 121 ~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f~~eRl-~qia~~~~~~ 184 (342)
T PLN03186 121 ETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTFRPQRL-IQIAERFGLN 184 (342)
T ss_pred cCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCccHHHH-HHHHHHcCCC
Confidence 344789999999999999999877432 11 11126889999999998875 4556665543
No 327
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=94.57 E-value=0.16 Score=58.16 Aligned_cols=45 Identities=22% Similarity=0.301 Sum_probs=33.5
Q ss_pred cccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 156 VYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
++|+...+.++.+.+...... -.-|.|+|..|+||+++|+.+++.
T Consensus 1 liG~S~~m~~~~~~~~~~a~~----~~pVLI~GE~GtGK~~lAr~iH~~ 45 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL----DRPVLIIGERGTGKELIAARLHYL 45 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC----CCCEEEECCCCChHHHHHHHHHHh
Confidence 467777777777776554321 134789999999999999998764
No 328
>PHA02244 ATPase-like protein
Probab=94.56 E-value=0.17 Score=57.08 Aligned_cols=22 Identities=27% Similarity=0.430 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
-|.|+|++|+|||++|+++++.
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~ 142 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEA 142 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999875
No 329
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=94.55 E-value=0.13 Score=52.86 Aligned_cols=116 Identities=22% Similarity=0.271 Sum_probs=57.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC--CCCHHHHHHHHHHHhcCCCCC------------cCchHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH--DFDVLRISKAILESITLSPCD------------LKDLNS 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~--~~~~~~~~~~i~~~~~~~~~~------------~~~~~~ 247 (1402)
.+++|+|..|.|||||++.++.-. ......+++.-.. ....... ...+..-..+ ...-+.
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~~~~~----~~~i~~~~q~~~~~~~tv~~~lLS~G~~ 102 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL--RPTSGRVRLDGADISQWDPNEL----GDHVGYLPQDDELFSGSIAENILSGGQR 102 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc--CCCCCeEEECCEEcccCCHHHH----HhheEEECCCCccccCcHHHHCcCHHHH
Confidence 489999999999999999998632 1122222221100 0111111 1111110000 011122
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCC-CCCCcEEEEEccchhhhh
Q 000594 248 VQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMA-GAPGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 248 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~-~~~gs~iivTtR~~~v~~ 303 (1402)
..-.+.+.+..++=++++|+.... +......+...+.. ...|..||++|.+.+...
T Consensus 103 qrv~la~al~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~ 160 (173)
T cd03246 103 QRLGLARALYGNPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETLA 160 (173)
T ss_pred HHHHHHHHHhcCCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH
Confidence 223455566677778999997432 22222223333321 123667888888776654
No 330
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.47 E-value=0.003 Score=63.91 Aligned_cols=85 Identities=15% Similarity=0.107 Sum_probs=69.3
Q ss_pred ccCCCcccEEEecccccccccccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccc
Q 000594 566 LPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHL 645 (1402)
Q Consensus 566 ~~~l~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L 645 (1402)
+..++...+||++.|.+-.+-..|+.++.|..|+++.|.|..+|+.++.+..++.+++..| .....|.+++.+++++++
T Consensus 38 i~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n-~~~~~p~s~~k~~~~k~~ 116 (326)
T KOG0473|consen 38 IASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKN-NHSQQPKSQKKEPHPKKN 116 (326)
T ss_pred hhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhcc-chhhCCccccccCCcchh
Confidence 4456778888888888877777788888888888888888888888888888888888776 567788888888888888
Q ss_pred cccCcc
Q 000594 646 DIEGAY 651 (1402)
Q Consensus 646 ~l~~~~ 651 (1402)
++-++.
T Consensus 117 e~k~~~ 122 (326)
T KOG0473|consen 117 EQKKTE 122 (326)
T ss_pred hhccCc
Confidence 887765
No 331
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=94.47 E-value=0.19 Score=55.28 Aligned_cols=128 Identities=17% Similarity=0.150 Sum_probs=66.2
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCC-C-
Q 000594 163 KARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSP-C- 240 (1402)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~-~- 240 (1402)
.+.++..+... ...+-++|+|..|.|||||.+.+.... . .....+++.-.+ ....+-..++......-+ .
T Consensus 98 ~~~~l~~l~~~-----~~~~~~~i~g~~g~GKttl~~~l~~~~-~-~~~G~i~~~g~~-v~~~d~~~ei~~~~~~~~q~~ 169 (270)
T TIGR02858 98 ADKLLPYLVRN-----NRVLNTLIISPPQCGKTTLLRDLARIL-S-TGISQLGLRGKK-VGIVDERSEIAGCVNGVPQHD 169 (270)
T ss_pred HHHHHHHHHhC-----CCeeEEEEEcCCCCCHHHHHHHHhCcc-C-CCCceEEECCEE-eecchhHHHHHHHhccccccc
Confidence 34444555432 334678999999999999999998642 2 112223321100 000001122322221111 1
Q ss_pred -----C-cCchHHHHHHHHHHhc-CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchhhhhh
Q 000594 241 -----D-LKDLNSVQLKLKEAVF-KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 241 -----~-~~~~~~~~~~l~~~l~-~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~v~~~ 304 (1402)
+ .++... ...+...+. ..+=++++|.+.. .+.+..+...+. .|..||+||-+..+...
T Consensus 170 ~~~r~~v~~~~~k-~~~~~~~i~~~~P~villDE~~~--~e~~~~l~~~~~---~G~~vI~ttH~~~~~~~ 234 (270)
T TIGR02858 170 VGIRTDVLDGCPK-AEGMMMLIRSMSPDVIVVDEIGR--EEDVEALLEALH---AGVSIIATAHGRDVEDL 234 (270)
T ss_pred ccccccccccchH-HHHHHHHHHhCCCCEEEEeCCCc--HHHHHHHHHHHh---CCCEEEEEechhHHHHH
Confidence 0 011111 222333332 5788999999843 355666655542 57889999987666443
No 332
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.46 E-value=0.074 Score=56.63 Aligned_cols=121 Identities=11% Similarity=0.116 Sum_probs=59.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC---CcCchHHHHHHHHH--Hh
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC---DLKDLNSVQLKLKE--AV 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~l~~--~l 256 (1402)
+++.|+|+.|.||||+.+.+.......+ ...|+.... .. ...+.++...+..... .......-..++.. .+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~--~G~~v~a~~-~~-~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~ 105 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAH--IGSFVPADS-AT-IGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRL 105 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHh--CCCeeEcCC-cE-EeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHh
Confidence 7899999999999999999874221111 111222111 00 0011112222221111 01111111122222 22
Q ss_pred cCCeEEEEEeCCCcCC-hhhH----HHhhcccCCC-CCCcEEEEEccchhhhhhcC
Q 000594 257 FKKKFLIVLDDVWSER-YDLW----QALKSPFMAG-APGSRIIVTTRSMDVASTMG 306 (1402)
Q Consensus 257 ~~k~~LlVlDdv~~~~-~~~~----~~~~~~l~~~-~~gs~iivTtR~~~v~~~~~ 306 (1402)
..++.|+++|..-... ..+. ..+...+... ..+..+|+||-+.+++....
T Consensus 106 ~~~~slvllDE~~~gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 106 ATRRSLVLIDEFGKGTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 4788999999985432 1111 1233333322 23457999999988877653
No 333
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=94.37 E-value=0.15 Score=53.24 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
||.|+|++|+||||+|+.+...
T Consensus 1 ~i~i~G~pGsGKst~a~~la~~ 22 (183)
T TIGR01359 1 VVFVLGGPGSGKGTQCAKIVEN 22 (183)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998864
No 334
>PRK13948 shikimate kinase; Provisional
Probab=94.33 E-value=0.31 Score=50.09 Aligned_cols=25 Identities=24% Similarity=0.399 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..+.|.++|+.|+||||+++.+.+.
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~ 33 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRA 33 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3468999999999999999999875
No 335
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=94.33 E-value=0.092 Score=54.45 Aligned_cols=78 Identities=22% Similarity=0.207 Sum_probs=42.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCC--CCCcCchHHHHHHHHHHh
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLS--PCDLKDLNSVQLKLKEAV 256 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~--~~~~~~~~~~~~~l~~~l 256 (1402)
.++.+|+|.|.+|.||||+|+.++.. .+..+ ++-++.. .+-...-.....+..... ....-+.+-+.+.|...+
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~-~~~~~--~~~I~~D-~YYk~~~~~~~~~~~~~n~d~p~A~D~dLl~~~L~~L~ 81 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQ-LGVEK--VVVISLD-DYYKDQSHLPFEERNKINYDHPEAFDLDLLIEHLKDLK 81 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHH-hCcCc--ceEeecc-ccccchhhcCHhhcCCcCccChhhhcHHHHHHHHHHHH
Confidence 34679999999999999999999875 33221 1111111 111111111111111111 123445666777788877
Q ss_pred cCCe
Q 000594 257 FKKK 260 (1402)
Q Consensus 257 ~~k~ 260 (1402)
++++
T Consensus 82 ~g~~ 85 (218)
T COG0572 82 QGKP 85 (218)
T ss_pred cCCc
Confidence 7777
No 336
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.33 E-value=0.28 Score=61.21 Aligned_cols=86 Identities=22% Similarity=0.273 Sum_probs=52.0
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccccccc-CceeEEEeCCCCC--HHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSHDFD--VLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~--~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
.+|++++|+.|+||||.+.+++......+- ..+..++.. .+. ..+-++...+.++.+.....+..++...+.+ ++
T Consensus 185 g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G~kkV~lit~D-t~RigA~eQL~~~a~~~gvpv~~~~~~~~l~~al~~-~~ 262 (767)
T PRK14723 185 GGVLALVGPTGVGKTTTTAKLAARCVAREGADQLALLTTD-SFRIGALEQLRIYGRILGVPVHAVKDAADLRFALAA-LG 262 (767)
T ss_pred CeEEEEECCCCCcHHHHHHHHHhhHHHHcCCCeEEEecCc-ccchHHHHHHHHHHHhCCCCccccCCHHHHHHHHHH-hc
Confidence 479999999999999999988865422222 234444432 333 4455666666666544333455555555543 34
Q ss_pred CCeEEEEEeCCC
Q 000594 258 KKKFLIVLDDVW 269 (1402)
Q Consensus 258 ~k~~LlVlDdv~ 269 (1402)
++ =+|++|=.-
T Consensus 263 ~~-D~VLIDTAG 273 (767)
T PRK14723 263 DK-HLVLIDTVG 273 (767)
T ss_pred CC-CEEEEeCCC
Confidence 44 367777764
No 337
>PF00006 ATP-synt_ab: ATP synthase alpha/beta family, nucleotide-binding domain This Pfam entry corresponds to chains a,b,c,d,e and f; InterPro: IPR000194 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. The F-ATPases (or F1F0-ATPases), V-ATPases (or V1V0-ATPases) and A-ATPases (or A1A0-ATPases) are composed of two linked complexes: the F1, V1 or A1 complex contains the catalytic core that synthesizes/hydrolyses ATP, and the F0, V0 or A0 complex that forms the membrane-spanning pore. The F-, V- and A-ATPases all contain rotary motors, one that drives proton translocation across the membrane and one that drives ATP synthesis/hydrolysis [, ]. In F-ATPases, there are three copies each of the alpha and beta subunits that form the catalytic core of the F1 complex, while the remaining F1 subunits (gamma, delta, epsilon) form part of the stalks. There is a substrate-binding site on each of the alpha and beta subunits, those on the beta subunits being catalytic, while those on the alpha subunits are regulatory. The alpha and beta subunits form a cylinder that is attached to the central stalk. The alpha/beta subunits undergo a sequence of conformational changes leading to the formation of ATP from ADP, which are induced by the rotation of the gamma subunit, itself driven by the movement of protons through the F0 complex C subunit []. In V- and A-ATPases, the alpha/A and beta/B subunits of the V1 or A1 complex are homologous to the alpha and beta subunits in the F1 complex of F-ATPases, except that the alpha subunit is catalytic and the beta subunit is regulatory. The structure of the alpha and beta subunits is almost identical. Each subunit consists of a N-terminal beta-barrel, a central domain containing the nucleotide-binding site and a C-terminal alpha bundle domain []. This entry represents the central domain. It is found in the alpha and beta subunits from F1, V1, and A1 complexes, as well as in flagellar ATPase and the termination factor Rho. ; GO: 0005524 ATP binding; PDB: 3OEE_N 2HLD_W 3FKS_N 3OE7_O 3OFN_M 2XOK_D 3OEH_V 2WPD_F 3ZRY_D 2OBL_A ....
Probab=94.32 E-value=0.16 Score=53.69 Aligned_cols=82 Identities=20% Similarity=0.325 Sum_probs=50.4
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHHHHhcCC-------CCCcCchH-------
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAILESITLS-------PCDLKDLN------- 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~-------~~~~~~~~------- 246 (1402)
.-++|.|.+|+|||+|+..+.+.. .-+..+++.+.+. ..+.++.+++...-... ..+.....
T Consensus 16 qr~~I~g~~g~GKt~Ll~~i~~~~---~~d~~V~~~iGer~~Ev~~~~~~~~~~~~~~~t~vv~~t~~~~~~~r~~~~~~ 92 (215)
T PF00006_consen 16 QRIGIFGGAGVGKTVLLQEIANNQ---DADVVVYALIGERGREVTEFIEELKGEGALERTVVVAATSDEPPAARYRAPYT 92 (215)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHC---TTTEEEEEEESECHHHHHHHHHHHHHTTGGGGEEEEEEETTS-HHHHHHHHHH
T ss_pred CEEEEEcCcccccchhhHHHHhcc---cccceeeeeccccchhHHHHHHHHhhcccccccccccccchhhHHHHhhhhcc
Confidence 468999999999999999998753 2233467777654 45566666664431111 11111111
Q ss_pred --HHHHHHHHHhcCCeEEEEEeCC
Q 000594 247 --SVQLKLKEAVFKKKFLIVLDDV 268 (1402)
Q Consensus 247 --~~~~~l~~~l~~k~~LlVlDdv 268 (1402)
...+.++. +++.+|+++||+
T Consensus 93 a~t~AEyfrd--~G~dVlli~Dsl 114 (215)
T PF00006_consen 93 ALTIAEYFRD--QGKDVLLIIDSL 114 (215)
T ss_dssp HHHHHHHHHH--TTSEEEEEEETH
T ss_pred chhhhHHHhh--cCCceeehhhhh
Confidence 12233333 599999999998
No 338
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=94.31 E-value=0.21 Score=61.83 Aligned_cols=48 Identities=21% Similarity=0.271 Sum_probs=38.1
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
...++|....+.++.+.+...... ..-|.|+|..|+|||++|+.+++.
T Consensus 195 ~~~liG~s~~~~~~~~~~~~~a~~----~~pvli~Ge~GtGK~~lA~~ih~~ 242 (534)
T TIGR01817 195 EDGIIGKSPAMRQVVDQARVVARS----NSTVLLRGESGTGKELIAKAIHYL 242 (534)
T ss_pred cCceEECCHHHHHHHHHHHHHhCc----CCCEEEECCCCccHHHHHHHHHHh
Confidence 457899999999988887654321 135779999999999999999874
No 339
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=94.28 E-value=0.038 Score=61.03 Aligned_cols=95 Identities=23% Similarity=0.290 Sum_probs=47.9
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcC
Q 000594 164 ARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLK 243 (1402)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~ 243 (1402)
..+++.+.... +-+.++|+.|+|||++++..........|- ..-+..+...+...+++.+-..+.......
T Consensus 23 ~~ll~~l~~~~-------~pvLl~G~~GtGKT~li~~~l~~l~~~~~~-~~~~~~s~~Tts~~~q~~ie~~l~k~~~~~- 93 (272)
T PF12775_consen 23 SYLLDLLLSNG-------RPVLLVGPSGTGKTSLIQNFLSSLDSDKYL-VITINFSAQTTSNQLQKIIESKLEKRRGRV- 93 (272)
T ss_dssp HHHHHHHHHCT-------EEEEEESSTTSSHHHHHHHHHHCSTTCCEE-EEEEES-TTHHHHHHHHCCCTTECECTTEE-
T ss_pred HHHHHHHHHcC-------CcEEEECCCCCchhHHHHhhhccCCccccc-eeEeeccCCCCHHHHHHHHhhcEEcCCCCC-
Confidence 34666665432 457899999999999999977543222221 233444544333333222111111110000
Q ss_pred chHHHHHHHHHHhcCCeEEEEEeCCCcCChhhH
Q 000594 244 DLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLW 276 (1402)
Q Consensus 244 ~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~ 276 (1402)
..--.+|+.++++||+.-...+.|
T Consensus 94 ---------~gP~~~k~lv~fiDDlN~p~~d~y 117 (272)
T PF12775_consen 94 ---------YGPPGGKKLVLFIDDLNMPQPDKY 117 (272)
T ss_dssp ---------EEEESSSEEEEEEETTT-S---TT
T ss_pred ---------CCCCCCcEEEEEecccCCCCCCCC
Confidence 000137899999999955444443
No 340
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=94.28 E-value=0.26 Score=56.35 Aligned_cols=57 Identities=18% Similarity=0.186 Sum_probs=40.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccc-c----ccCceeEEEeCCCCCHHHHHHHHHHHhc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLT-E----AFEPKAWVCVSHDFDVLRISKAILESIT 236 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~----~f~~~~wv~~~~~~~~~~~~~~i~~~~~ 236 (1402)
...+++-|+|.+|+||||+|.+++..... . .=..++||+....++..++. ++++.++
T Consensus 93 ~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~f~~~rl~-~~~~~~g 154 (310)
T TIGR02236 93 ETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENTFRPERIM-QMAEARG 154 (310)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCCCCHHHHH-HHHHHcC
Confidence 34479999999999999999998754311 0 11368899999988887654 4455444
No 341
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.27 E-value=0.24 Score=53.53 Aligned_cols=48 Identities=19% Similarity=0.194 Sum_probs=31.7
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
..++.|.|.+|.||||+|.++.....+.. ..+++++... +..++.+.+
T Consensus 24 g~~~~i~G~~G~GKTtl~~~~~~~~~~~g-~~~~yi~~e~--~~~~~~~~~ 71 (230)
T PRK08533 24 GSLILIEGDESTGKSILSQRLAYGFLQNG-YSVSYVSTQL--TTTEFIKQM 71 (230)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHHHhCC-CcEEEEeCCC--CHHHHHHHH
Confidence 35999999999999999877665433332 3456666333 445555555
No 342
>PTZ00088 adenylate kinase 1; Provisional
Probab=94.23 E-value=0.056 Score=57.89 Aligned_cols=21 Identities=38% Similarity=0.574 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.|+|++|+||||+|+.+.+.
T Consensus 9 Ivl~G~PGsGK~T~a~~La~~ 29 (229)
T PTZ00088 9 IVLFGAPGVGKGTFAEILSKK 29 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 889999999999999998765
No 343
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=94.19 E-value=0.23 Score=59.88 Aligned_cols=59 Identities=20% Similarity=0.313 Sum_probs=41.4
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEE
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC 217 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~ 217 (1402)
+++--..-++++..||....... ...+++.+.|++|.||||.++.+++.. .|+.+-|..
T Consensus 20 eLavhkkKv~eV~~wl~~~~~~~-~~~~iLlLtGP~G~GKtttv~~La~el---g~~v~Ew~n 78 (519)
T PF03215_consen 20 ELAVHKKKVEEVRSWLEEMFSGS-SPKRILLLTGPSGCGKTTTVKVLAKEL---GFEVQEWIN 78 (519)
T ss_pred HhhccHHHHHHHHHHHHHHhccC-CCcceEEEECCCCCCHHHHHHHHHHHh---CCeeEEecC
Confidence 34445567778888886533222 345799999999999999999988753 355555654
No 344
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=94.19 E-value=0.083 Score=54.06 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.4
Q ss_pred EEEEEccCCChHHHHHHHHHccc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.|.|.|.+|.||||+|+.+.+..
T Consensus 2 riiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 37799999999999999998864
No 345
>PRK05439 pantothenate kinase; Provisional
Probab=94.18 E-value=0.26 Score=55.06 Aligned_cols=25 Identities=24% Similarity=0.238 Sum_probs=22.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
..+.+|+|.|.+|+||||+|+.+..
T Consensus 84 ~~~~iIgIaG~~gsGKSTla~~L~~ 108 (311)
T PRK05439 84 KVPFIIGIAGSVAVGKSTTARLLQA 108 (311)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 5568999999999999999998875
No 346
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=94.16 E-value=0.071 Score=56.16 Aligned_cols=120 Identities=15% Similarity=0.128 Sum_probs=61.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcC---chHHHHHHHHHH--h
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLK---DLNSVQLKLKEA--V 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~---~~~~~~~~l~~~--l 256 (1402)
+++.|.|+.|.||||+.+.+..-.+-.+. ..+|.+.. .. ..+...+...++....... ....-..++... +
T Consensus 30 ~~~~l~G~n~~GKstll~~i~~~~~la~~--G~~vpa~~-~~-l~~~d~I~~~~~~~d~~~~~~S~fs~e~~~~~~il~~ 105 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIALLAIMAQI--GCFVPAEY-AT-LPIFNRLLSRLSNDDSMERNLSTFASEMSETAYILDY 105 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHHHc--CCCcchhh-cC-ccChhheeEecCCccccchhhhHHHHHHHHHHHHHHh
Confidence 68999999999999999988643221111 11222111 01 1222333333332211111 111111122222 2
Q ss_pred cCCeEEEEEeCCCcCC-hhh----HHHhhcccCCCCCCcEEEEEccchhhhhhcCC
Q 000594 257 FKKKFLIVLDDVWSER-YDL----WQALKSPFMAGAPGSRIIVTTRSMDVASTMGS 307 (1402)
Q Consensus 257 ~~k~~LlVlDdv~~~~-~~~----~~~~~~~l~~~~~gs~iivTtR~~~v~~~~~~ 307 (1402)
..++-|+++|...... ..+ ...+...+.. .|..+|+||-..+++..+..
T Consensus 106 ~~~~~lvllDE~~~gt~~~~~~~l~~~il~~l~~--~~~~~i~~TH~~~l~~~~~~ 159 (204)
T cd03282 106 ADGDSLVLIDELGRGTSSADGFAISLAILECLIK--KESTVFFATHFRDIAAILGN 159 (204)
T ss_pred cCCCcEEEeccccCCCCHHHHHHHHHHHHHHHHh--cCCEEEEECChHHHHHHhhc
Confidence 3678899999974321 111 1223333333 37899999999998877653
No 347
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=94.15 E-value=0.078 Score=51.24 Aligned_cols=44 Identities=27% Similarity=0.304 Sum_probs=32.9
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCC
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLS 238 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~ 238 (1402)
+|.|.|.+|.||||+|+.++++. .-. -.+...++++|++..+.+
T Consensus 2 ~ItIsG~pGsG~TTva~~lAe~~-gl~-----------~vsaG~iFR~~A~e~gms 45 (179)
T COG1102 2 VITISGLPGSGKTTVARELAEHL-GLK-----------LVSAGTIFREMARERGMS 45 (179)
T ss_pred EEEeccCCCCChhHHHHHHHHHh-CCc-----------eeeccHHHHHHHHHcCCC
Confidence 68999999999999999998763 111 113346888999887754
No 348
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=94.15 E-value=0.12 Score=52.82 Aligned_cols=118 Identities=14% Similarity=0.040 Sum_probs=64.0
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCcee--EEEeCCCCCHHHHHHHHH--HH--hcCCC-CCcCc----h---HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKA--WVCVSHDFDVLRISKAIL--ES--ITLSP-CDLKD----L---NS 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~--wv~~~~~~~~~~~~~~i~--~~--~~~~~-~~~~~----~---~~ 247 (1402)
..|-|+|..|-||||.|..+.-+.....+.+.+ |.--.........++.+- .- .+... ....+ . .+
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 478899999999999999887665444443332 222221233334443320 00 01100 00011 1 11
Q ss_pred HHHHHHHHhcCC-eEEEEEeCCCc---CChhhHHHhhcccCCCCCCcEEEEEccch
Q 000594 248 VQLKLKEAVFKK-KFLIVLDDVWS---ERYDLWQALKSPFMAGAPGSRIIVTTRSM 299 (1402)
Q Consensus 248 ~~~~l~~~l~~k-~~LlVlDdv~~---~~~~~~~~~~~~l~~~~~gs~iivTtR~~ 299 (1402)
.-...++.+... -=++|||.+-. -..-..+++...+.....+..||+|-|+.
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 223344555444 44999999832 11223456666666666778999999985
No 349
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=94.14 E-value=0.16 Score=52.29 Aligned_cols=118 Identities=19% Similarity=0.175 Sum_probs=59.8
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----C---------cCchHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----D---------LKDLNS 247 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~---------~~~~~~ 247 (1402)
.+++|+|..|.|||||++.++... ......+++.-....+.. ..+...++.-.. . ...-+.
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~--~~~~G~i~~~g~~~~~~~---~~~~~~i~~~~q~~~~~~~~tv~~~~~LS~G~~ 101 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL--KPDSGEIKVLGKDIKKEP---EEVKRRIGYLPEEPSLYENLTVRENLKLSGGMK 101 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCCeEEEECCEEcccch---HhhhccEEEEecCCccccCCcHHHHhhcCHHHH
Confidence 589999999999999999987632 112233332111000000 011111111000 0 111122
Q ss_pred HHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCC-CCCcEEEEEccchhhhhh
Q 000594 248 VQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVAST 304 (1402)
Q Consensus 248 ~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~ 304 (1402)
..-.+...+..++=++++|+.-.. +....+.+...+... ..|..||++|.+......
T Consensus 102 qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~ 160 (173)
T cd03230 102 QRLALAQALLHDPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAER 160 (173)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHH
Confidence 223466677788899999997432 222223333333221 236778888888765543
No 350
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=94.13 E-value=0.12 Score=57.60 Aligned_cols=84 Identities=20% Similarity=0.164 Sum_probs=49.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 253 (1402)
+.-+++-|+|..|+||||||.++.... ...-..++||+..+.++... ++.++.... ..+..++....+.
T Consensus 51 p~G~ivEi~G~~ssGKttLaL~~ia~~-q~~g~~~a~ID~e~~ld~~~-----a~~lGvdl~rllv~~P~~~E~al~~~e 124 (322)
T PF00154_consen 51 PRGRIVEIYGPESSGKTTLALHAIAEA-QKQGGICAFIDAEHALDPEY-----AESLGVDLDRLLVVQPDTGEQALWIAE 124 (322)
T ss_dssp ETTSEEEEEESTTSSHHHHHHHHHHHH-HHTT-EEEEEESSS---HHH-----HHHTT--GGGEEEEE-SSHHHHHHHHH
T ss_pred ccCceEEEeCCCCCchhhhHHHHHHhh-hcccceeEEecCcccchhhH-----HHhcCccccceEEecCCcHHHHHHHHH
Confidence 345799999999999999999988653 33345578999988877643 344443221 1122344444444
Q ss_pred HHhc-CCeEEEEEeCC
Q 000594 254 EAVF-KKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (1402)
+.++ +.--++|+|-|
T Consensus 125 ~lirsg~~~lVVvDSv 140 (322)
T PF00154_consen 125 QLIRSGAVDLVVVDSV 140 (322)
T ss_dssp HHHHTTSESEEEEE-C
T ss_pred HHhhcccccEEEEecC
Confidence 4444 34458888988
No 351
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=94.11 E-value=0.21 Score=55.32 Aligned_cols=89 Identities=16% Similarity=0.179 Sum_probs=48.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCH--HHHHHHHHHHhcCCC---CCcCchHH-HHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDV--LRISKAILESITLSP---CDLKDLNS-VQLKL 252 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~--~~~~~~i~~~~~~~~---~~~~~~~~-~~~~l 252 (1402)
.+.+++.++|++|+||||++..++....+.. ..+.+++.. .+.. .+-++...+..+.+. ....+... ....+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g-~~V~li~~D-~~r~~a~~ql~~~~~~~~i~~~~~~~~~dp~~~~~~~l 147 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG-KSVLLAAGD-TFRAAAIEQLEEWAKRLGVDVIKQKEGADPAAVAFDAI 147 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC-CEEEEEeCC-CCCHHHHHHHHHHHHhCCeEEEeCCCCCCHHHHHHHHH
Confidence 3457999999999999999999886432222 234455433 3332 233444455544321 11122222 22334
Q ss_pred HHHhcCCeEEEEEeCCC
Q 000594 253 KEAVFKKKFLIVLDDVW 269 (1402)
Q Consensus 253 ~~~l~~k~~LlVlDdv~ 269 (1402)
.....+..=++++|-..
T Consensus 148 ~~~~~~~~D~ViIDT~G 164 (272)
T TIGR00064 148 QKAKARNIDVVLIDTAG 164 (272)
T ss_pred HHHHHCCCCEEEEeCCC
Confidence 44444445578888763
No 352
>PTZ00301 uridine kinase; Provisional
Probab=94.09 E-value=0.059 Score=56.85 Aligned_cols=24 Identities=29% Similarity=0.585 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..+|+|.|.+|.||||+|+.+...
T Consensus 3 ~~iIgIaG~SgSGKTTla~~l~~~ 26 (210)
T PTZ00301 3 CTVIGISGASGSGKSSLSTNIVSE 26 (210)
T ss_pred CEEEEEECCCcCCHHHHHHHHHHH
Confidence 369999999999999999998764
No 353
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=94.08 E-value=0.044 Score=55.79 Aligned_cols=42 Identities=26% Similarity=0.247 Sum_probs=29.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCCCCC
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSHDFD 223 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~~~~ 223 (1402)
..++.+.|+.|+|||.+|+.+... .. +.....+-++++.-..
T Consensus 3 ~~~~ll~GpsGvGKT~la~~la~~-l~~~~~~~~~~~d~s~~~~ 45 (171)
T PF07724_consen 3 KSNFLLAGPSGVGKTELAKALAEL-LFVGSERPLIRIDMSEYSE 45 (171)
T ss_dssp SEEEEEESSTTSSHHHHHHHHHHH-HT-SSCCEEEEEEGGGHCS
T ss_pred EEEEEEECCCCCCHHHHHHHHHHH-hccCCccchHHHhhhcccc
Confidence 468899999999999999998864 33 3344445555554333
No 354
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.03 E-value=0.26 Score=57.49 Aligned_cols=26 Identities=35% Similarity=0.427 Sum_probs=22.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..+.+|.++|..|+||||+|.+++..
T Consensus 98 ~~~~vi~lvG~~GvGKTTtaaKLA~~ 123 (429)
T TIGR01425 98 GKQNVIMFVGLQGSGKTTTCTKLAYY 123 (429)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 34689999999999999999988764
No 355
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=94.02 E-value=0.035 Score=53.98 Aligned_cols=21 Identities=43% Similarity=0.664 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.|.|++|+||||+|+.+...
T Consensus 1 I~i~G~~GsGKtTia~~L~~~ 21 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAER 21 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998875
No 356
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=93.97 E-value=0.22 Score=57.44 Aligned_cols=109 Identities=20% Similarity=0.200 Sum_probs=63.8
Q ss_pred ccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHH
Q 000594 155 AVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILES 234 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (1402)
.++|+++.+..+...+.... -+.+.|.+|+|||+||++++.. ... ...+|.+.......++.....-.
T Consensus 25 ~~~g~~~~~~~~l~a~~~~~--------~vll~G~PG~gKT~la~~lA~~-l~~---~~~~i~~t~~l~p~d~~G~~~~~ 92 (329)
T COG0714 25 VVVGDEEVIELALLALLAGG--------HVLLEGPPGVGKTLLARALARA-LGL---PFVRIQCTPDLLPSDLLGTYAYA 92 (329)
T ss_pred eeeccHHHHHHHHHHHHcCC--------CEEEECCCCccHHHHHHHHHHH-hCC---CeEEEecCCCCCHHHhcCchhHh
Confidence 47898888888877776542 4789999999999999998864 332 23456666666666655443322
Q ss_pred hcC---CCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhccc
Q 000594 235 ITL---SPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPF 283 (1402)
Q Consensus 235 ~~~---~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l 283 (1402)
... ......+- -+ ...-+.++++|.++......-..+...+
T Consensus 93 ~~~~~~~~~~~~~g-----pl---~~~~~~ill~DEInra~p~~q~aLl~~l 136 (329)
T COG0714 93 ALLLEPGEFRFVPG-----PL---FAAVRVILLLDEINRAPPEVQNALLEAL 136 (329)
T ss_pred hhhccCCeEEEecC-----Cc---ccccceEEEEeccccCCHHHHHHHHHHH
Confidence 211 00000000 00 0111168999999876654444444433
No 357
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=93.97 E-value=1.2 Score=49.27 Aligned_cols=118 Identities=14% Similarity=0.055 Sum_probs=65.1
Q ss_pred HHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc------------cCceeEEEeCCCCCHHHHHHH
Q 000594 163 KARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA------------FEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 163 ~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~------------f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
-+++...+..+ .-.....++|+.|+||+++|..++....... .+...|+.-....
T Consensus 6 ~~~L~~~i~~~-----rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~-------- 72 (290)
T PRK05917 6 WEALIQRVRDQ-----KVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKG-------- 72 (290)
T ss_pred HHHHHHHHHcC-----CcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCC--------
Confidence 34556666443 2235778999999999999999876542211 1111111100000
Q ss_pred HHHHhcCCCCCcCchHHHHHHHHHHh-----cCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhh
Q 000594 231 ILESITLSPCDLKDLNSVQLKLKEAV-----FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVAST 304 (1402)
Q Consensus 231 i~~~~~~~~~~~~~~~~~~~~l~~~l-----~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~ 304 (1402)
..-.+++.. .+.+.+ .+++=++|+|++..-+.+.+..+...+-.-..++.+|++|.+ ..+...
T Consensus 73 ----------~~I~idqiR-~l~~~~~~~p~e~~~kv~ii~~ad~mt~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~T 141 (290)
T PRK05917 73 ----------RLHSIETPR-AIKKQIWIHPYESPYKIYIIHEADRMTLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPT 141 (290)
T ss_pred ----------CcCcHHHHH-HHHHHHhhCccCCCceEEEEechhhcCHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHH
Confidence 001122221 222222 255668899999776777888888877655566666655555 444433
No 358
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=93.93 E-value=0.32 Score=53.05 Aligned_cols=49 Identities=22% Similarity=0.379 Sum_probs=34.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKA 230 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~ 230 (1402)
+.-.++.|.|.+|.|||++|.++..... ..-..++||+... +..++.+.
T Consensus 19 ~~gs~~lI~G~pGsGKT~la~~~l~~~~-~~ge~~lyvs~ee--~~~~i~~~ 67 (237)
T TIGR03877 19 PERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGIYVALEE--HPVQVRRN 67 (237)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHH-HcCCcEEEEEeeC--CHHHHHHH
Confidence 4457999999999999999998765423 3345678888765 34444444
No 359
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=93.93 E-value=0.21 Score=63.86 Aligned_cols=134 Identities=16% Similarity=0.094 Sum_probs=71.0
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
..++|+...+.++.+.+...... ..-|.|+|..|+|||++|+.+++....... ..+.+++..-. ...+-..+..
T Consensus 376 ~~liG~S~~~~~~~~~~~~~a~~----~~pVLI~GE~GTGK~~lA~~ih~~s~r~~~-~~v~i~c~~~~-~~~~~~~lfg 449 (686)
T PRK15429 376 GEIIGRSEAMYSVLKQVEMVAQS----DSTVLILGETGTGKELIARAIHNLSGRNNR-RMVKMNCAAMP-AGLLESDLFG 449 (686)
T ss_pred cceeecCHHHHHHHHHHHHHhCC----CCCEEEECCCCcCHHHHHHHHHHhcCCCCC-CeEEEecccCC-hhHhhhhhcC
Confidence 36899999998887776543221 135789999999999999999874322211 22334433321 1111112211
Q ss_pred HhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCC-----------CCCcEEEEEccc
Q 000594 234 SITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAG-----------APGSRIIVTTRS 298 (1402)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~-----------~~gs~iivTtR~ 298 (1402)
........ ........+. ....=.|+||||..-..+....+...+... ....|||.||..
T Consensus 450 ~~~~~~~g--~~~~~~g~le---~a~~GtL~Ldei~~L~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~RiI~~t~~ 520 (686)
T PRK15429 450 HERGAFTG--ASAQRIGRFE---LADKSSLFLDEVGDMPLELQPKLLRVLQEQEFERLGSNKIIQTDVRLIAATNR 520 (686)
T ss_pred cccccccc--cccchhhHHH---hcCCCeEEEechhhCCHHHHHHHHHHHHhCCEEeCCCCCcccceEEEEEeCCC
Confidence 11100000 0011111121 123356999999765555555665555322 134588888864
No 360
>KOG1532 consensus GTPase XAB1, interacts with DNA repair protein XPA [Replication, recombination and repair]
Probab=93.91 E-value=0.25 Score=51.89 Aligned_cols=61 Identities=25% Similarity=0.347 Sum_probs=38.1
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEE---------eCCCCCHHHH--HHHHHHHhcCCCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVC---------VSHDFDVLRI--SKAILESITLSPC 240 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~---------~~~~~~~~~~--~~~i~~~~~~~~~ 240 (1402)
.++.+|.++||+|.||||..+.++.+. ...+..-.-|. ..-+.++++. .++.+++.+..+.
T Consensus 17 ~~p~~ilVvGMAGSGKTTF~QrL~~hl-~~~~~ppYviNLDPAv~~vpy~aniDIRDtVkYkEvMkqY~LGPN 88 (366)
T KOG1532|consen 17 QRPVIILVVGMAGSGKTTFMQRLNSHL-HAKKTPPYVINLDPAVRNVPYPANIDIRDTVKYKEVMKQYQLGPN 88 (366)
T ss_pred cCCcEEEEEecCCCCchhHHHHHHHHH-hhccCCCeEEeCCHHHhcCCCccCCchhhhhhHHHHHHHhCCCCC
Confidence 455688899999999999999988753 22222111121 2233455554 4677777766554
No 361
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=93.90 E-value=0.24 Score=53.68 Aligned_cols=26 Identities=27% Similarity=0.327 Sum_probs=23.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
....+++|.|+.|.|||||++.+...
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~ 56 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEAL 56 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 55689999999999999999998864
No 362
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=93.89 E-value=0.14 Score=58.67 Aligned_cols=82 Identities=20% Similarity=0.322 Sum_probs=48.8
Q ss_pred CCccccchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc---CceeEEEeC-C
Q 000594 153 EPAVYGRDEDKARILDMVLEN--------DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF---EPKAWVCVS-H 220 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f---~~~~wv~~~-~ 220 (1402)
+..++|.++.+..+.-.+... +-.....++-|.++|++|+|||++|+.+.... ...| +...++... .
T Consensus 11 d~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l-~~~fi~vdat~~~e~g~v 89 (441)
T TIGR00390 11 DKYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYV 89 (441)
T ss_pred hhhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHh-CCeEEEeecceeecCCcc
Confidence 345788888888876666531 00001234678899999999999999998753 2222 222222221 2
Q ss_pred CCCHHHHHHHHHHHh
Q 000594 221 DFDVLRISKAILESI 235 (1402)
Q Consensus 221 ~~~~~~~~~~i~~~~ 235 (1402)
..+...+++.+.+..
T Consensus 90 G~dvE~i~r~l~e~A 104 (441)
T TIGR00390 90 GRDVESMVRDLTDAA 104 (441)
T ss_pred cCCHHHHHHHHHHHH
Confidence 235666666665543
No 363
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=93.88 E-value=2.4 Score=47.51 Aligned_cols=156 Identities=10% Similarity=0.025 Sum_probs=86.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccccc---------ccCceeEEEe-CCCCCHHHHHHHHHHHhcCCCCCcCchHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTE---------AFEPKAWVCV-SHDFDVLRISKAILESITLSPCDLKDLNSVQL 250 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~---------~f~~~~wv~~-~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~ 250 (1402)
.++..++|..|.||+++|..+.+..... +-+...++.. .....+.++. ++.+.+...+
T Consensus 18 ~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g~~i~vd~Ir-~l~~~~~~~~----------- 85 (299)
T PRK07132 18 SHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFDKDLSKSEFL-SAINKLYFSS----------- 85 (299)
T ss_pred CeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCCCcCCHHHHH-HHHHHhccCC-----------
Confidence 3577799999999999999987653111 1112222221 1111221111 2222221110
Q ss_pred HHHHHhcCCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCcceeecccCCChhhHHHHHHH
Q 000594 251 KLKEAVFKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~ 329 (1402)
.-.+++=++|+||+..-+......+...+-.-..++.+|++|.+ ..+...... ....+++.++++++..+.+..
T Consensus 86 ----~~~~~~KvvII~~~e~m~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~S-Rc~~~~f~~l~~~~l~~~l~~ 160 (299)
T PRK07132 86 ----FVQSQKKILIIKNIEKTSNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVS-RCQVFNVKEPDQQKILAKLLS 160 (299)
T ss_pred ----cccCCceEEEEecccccCHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHh-CeEEEECCCCCHHHHHHHHHH
Confidence 01247778899998655555677777777665667777765543 444433222 245567999999998877764
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHH
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAARA 363 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~ 363 (1402)
.. . . .+.++.++...+|.=-|+..
T Consensus 161 ~~-----~-~----~~~a~~~a~~~~~~~~a~~~ 184 (299)
T PRK07132 161 KN-----K-E----KEYNWFYAYIFSNFEQAEKY 184 (299)
T ss_pred cC-----C-C----hhHHHHHHHHcCCHHHHHHH
Confidence 31 1 1 23455666666663344444
No 364
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=93.87 E-value=0.2 Score=53.67 Aligned_cols=22 Identities=27% Similarity=0.368 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|+|.|..|.||||+|+.+...
T Consensus 1 IigI~G~sGSGKTTla~~L~~~ 22 (220)
T cd02025 1 IIGIAGSVAVGKSTTARVLQAL 22 (220)
T ss_pred CEEeeCCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 365
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=93.83 E-value=0.044 Score=46.12 Aligned_cols=22 Identities=32% Similarity=0.616 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|+|.|..|.||||+|+.+.+.
T Consensus 1 ~i~i~G~~gsGKst~~~~l~~~ 22 (69)
T cd02019 1 IIAITGGSGSGKSTVAKKLAEQ 22 (69)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999998865
No 366
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.82 E-value=0.0068 Score=60.63 Aligned_cols=87 Identities=18% Similarity=0.238 Sum_probs=52.1
Q ss_pred CceeEeccCCCCccccccccCCcCccceeeecCCCCcccccccccCCcCCCcccceecccCCCcccCCccccCCCCCCCe
Q 000594 1256 LTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEH 1335 (1402)
Q Consensus 1256 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~c~~L~~l~~~~l~~l~~L~~ 1335 (1402)
++.+|-+++.+...-.. -+.++++++.|.+.+|..+....-+.. -...++|+.|+|++|+.+++-...++..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle-~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLE-HLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHH-HHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 34445455444433222 356777888888888776654432111 1155677777777777777666566667777777
Q ss_pred eeccCCCCC
Q 000594 1336 LRVISCPNF 1344 (1402)
Q Consensus 1336 L~l~~c~~l 1344 (1402)
|.|.+.+.+
T Consensus 181 L~l~~l~~v 189 (221)
T KOG3864|consen 181 LHLYDLPYV 189 (221)
T ss_pred HHhcCchhh
Confidence 777764443
No 367
>PRK05480 uridine/cytidine kinase; Provisional
Probab=93.82 E-value=0.051 Score=58.08 Aligned_cols=26 Identities=35% Similarity=0.571 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+..+|+|.|.+|+||||||+.++..
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~ 29 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEE 29 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 34579999999999999999998874
No 368
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=93.80 E-value=0.41 Score=52.29 Aligned_cols=22 Identities=36% Similarity=0.431 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+..|+|+||+|||+||..++..
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHH
Confidence 6679999999999999998754
No 369
>PRK06547 hypothetical protein; Provisional
Probab=93.79 E-value=0.081 Score=53.95 Aligned_cols=26 Identities=31% Similarity=0.387 Sum_probs=22.9
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
....+|+|.|++|.||||+|+.+...
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~ 38 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAAR 38 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 45679999999999999999998864
No 370
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=93.75 E-value=0.33 Score=56.20 Aligned_cols=81 Identities=22% Similarity=0.226 Sum_probs=47.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cCchHHHHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCD-----LKDLNSVQLKLKEA 255 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~ 255 (1402)
-.++.|.|.+|+|||||+.+++... ...-..++|++.... ..++ +.-++.++..... ..+.+.+...+.
T Consensus 82 GslvLI~G~pG~GKStLllq~a~~~-a~~g~~VlYvs~EEs--~~qi-~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~-- 155 (372)
T cd01121 82 GSVILIGGDPGIGKSTLLLQVAARL-AKRGGKVLYVSGEES--PEQI-KLRADRLGISTENLYLLAETNLEDILASIE-- 155 (372)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHH-HhcCCeEEEEECCcC--HHHH-HHHHHHcCCCcccEEEEccCcHHHHHHHHH--
Confidence 4699999999999999999988653 222245667765433 3332 2223445432221 123344333332
Q ss_pred hcCCeEEEEEeCC
Q 000594 256 VFKKKFLIVLDDV 268 (1402)
Q Consensus 256 l~~k~~LlVlDdv 268 (1402)
..+.-+||+|.+
T Consensus 156 -~~~~~lVVIDSI 167 (372)
T cd01121 156 -ELKPDLVIIDSI 167 (372)
T ss_pred -hcCCcEEEEcch
Confidence 246668888887
No 371
>PRK06002 fliI flagellum-specific ATP synthase; Validated
Probab=93.73 E-value=0.23 Score=58.05 Aligned_cols=85 Identities=15% Similarity=0.119 Sum_probs=47.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCC------CCCcCchH-----HHHH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLS------PCDLKDLN-----SVQL 250 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~------~~~~~~~~-----~~~~ 250 (1402)
..++|+|..|.|||||++.+.... .....++|+.-.+..++.++....+...... ..+..... ....
T Consensus 166 qri~I~G~SGsGKTTLL~~Ia~l~--~pd~gvv~liGergrev~e~~~~~l~~~r~rtI~vV~qsd~~~~~r~~~~~~a~ 243 (450)
T PRK06002 166 QRIGIFAGSGVGKSTLLAMLARAD--AFDTVVIALVGERGREVREFLEDTLADNLKKAVAVVATSDESPMMRRLAPLTAT 243 (450)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC--CCCeeeeeecccCCccHHHHhHHHHHHhhCCeEEEEEcCCCCHHHHHHHHHHHH
Confidence 589999999999999999887532 1122344444334455555544444433111 11111111 1112
Q ss_pred HHHHHh--cCCeEEEEEeCC
Q 000594 251 KLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 251 ~l~~~l--~~k~~LlVlDdv 268 (1402)
.+.+++ +++.+|+++||+
T Consensus 244 ~iAEyfrd~G~~Vll~~Dsl 263 (450)
T PRK06002 244 AIAEYFRDRGENVLLIVDSV 263 (450)
T ss_pred HHHHHHHHcCCCEEEeccch
Confidence 233333 489999999998
No 372
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.71 E-value=0.37 Score=57.27 Aligned_cols=87 Identities=17% Similarity=0.212 Sum_probs=47.1
Q ss_pred cEEEEEEccCCChHHHHHHHHHcccc-ccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKL-TEAFEPKAWVCVSH-DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
.+|++++|+.|+||||++.+++.... +..-..+..++... .....+-++...+..+.......+..+....+ ..+++
T Consensus 256 g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~~kV~LI~~Dt~RigA~EQLr~~AeilGVpv~~~~~~~Dl~~aL-~~L~d 334 (484)
T PRK06995 256 GGVFALMGPTGVGKTTTTAKLAARCVMRHGASKVALLTTDSYRIGGHEQLRIYGKILGVPVHAVKDAADLRLAL-SELRN 334 (484)
T ss_pred CcEEEEECCCCccHHHHHHHHHHHHHHhcCCCeEEEEeCCccchhHHHHHHHHHHHhCCCeeccCCchhHHHHH-HhccC
Confidence 47999999999999999999986542 22122344444332 12333445555555554332222222222222 23344
Q ss_pred CeEEEEEeCCC
Q 000594 259 KKFLIVLDDVW 269 (1402)
Q Consensus 259 k~~LlVlDdv~ 269 (1402)
+ ..+++|-..
T Consensus 335 ~-d~VLIDTaG 344 (484)
T PRK06995 335 K-HIVLIDTIG 344 (484)
T ss_pred C-CeEEeCCCC
Confidence 4 467777764
No 373
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=93.71 E-value=0.052 Score=57.83 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+...+|+|+|++|.||||||+.+...
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~ 29 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQ 29 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999998864
No 374
>PRK13949 shikimate kinase; Provisional
Probab=93.71 E-value=0.37 Score=49.14 Aligned_cols=22 Identities=45% Similarity=0.572 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
-|.|+|+.|.||||+|+.++..
T Consensus 3 ~I~liG~~GsGKstl~~~La~~ 24 (169)
T PRK13949 3 RIFLVGYMGAGKTTLGKALARE 24 (169)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999998875
No 375
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.68 E-value=0.28 Score=57.22 Aligned_cols=87 Identities=21% Similarity=0.267 Sum_probs=46.2
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccc-cccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLT-EAFEPKAWVCVSH-DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~-~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~ 257 (1402)
...+++++|..|+||||++..+....+. ...+.+.++.... .....+-+....+.++.+.....+..+....+. .++
T Consensus 190 ~g~vi~lvGpnG~GKTTtlakLA~~~~~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v~~~~dl~~al~-~l~ 268 (420)
T PRK14721 190 QGGVYALIGPTGVGKTTTTAKLAARAVIRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSIKDIADLQLMLH-ELR 268 (420)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecCCCHHHHHHHHH-Hhc
Confidence 3479999999999999999988764322 2223344444322 122333344555555544333333333333333 233
Q ss_pred CCeEEEEEeCC
Q 000594 258 KKKFLIVLDDV 268 (1402)
Q Consensus 258 ~k~~LlVlDdv 268 (1402)
++ -++++|-.
T Consensus 269 ~~-d~VLIDTa 278 (420)
T PRK14721 269 GK-HMVLIDTV 278 (420)
T ss_pred CC-CEEEecCC
Confidence 33 34566665
No 376
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=93.68 E-value=0.098 Score=50.14 Aligned_cols=41 Identities=24% Similarity=0.144 Sum_probs=29.0
Q ss_pred HHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 161 EDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 161 ~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
++..++.+.+...- ....+|.+.|.-|.||||+++.++...
T Consensus 6 ~~t~~l~~~l~~~l----~~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 6 KAMDKFGKAFAKPL----DFGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred HHHHHHHHHHHHhC----CCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 44555555554322 222589999999999999999998753
No 377
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=93.67 E-value=0.29 Score=54.22 Aligned_cols=25 Identities=24% Similarity=0.276 Sum_probs=21.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
..+.+|+|.|..|+||||+|+.+..
T Consensus 60 ~~p~IIGIaG~~GSGKSTlar~L~~ 84 (290)
T TIGR00554 60 KIPYIISIAGSVAVGKSTTARILQA 84 (290)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHH
Confidence 4568999999999999999987654
No 378
>cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages.
Probab=93.59 E-value=0.63 Score=50.20 Aligned_cols=22 Identities=32% Similarity=0.490 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.++.
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~G 50 (220)
T cd03263 29 EIFGLLGHNGAGKTTTLKMLTG 50 (220)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 379
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=93.59 E-value=0.46 Score=54.81 Aligned_cols=51 Identities=29% Similarity=0.368 Sum_probs=37.3
Q ss_pred CccccchH---HHHHHHHHHhcCCC---CCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 154 PAVYGRDE---DKARILDMVLENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 154 ~~~vGr~~---~~~~l~~~L~~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.++-|-|+ |+++|+++|.++.. -+..=++=|.++|++|.|||-||++|+-.
T Consensus 304 ~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGE 360 (752)
T KOG0734|consen 304 EDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGE 360 (752)
T ss_pred ccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcc
Confidence 45677775 67778888865431 01133567889999999999999999865
No 380
>PTZ00035 Rad51 protein; Provisional
Probab=93.58 E-value=0.5 Score=54.08 Aligned_cols=58 Identities=19% Similarity=0.112 Sum_probs=39.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcccc-c----cccCceeEEEeCCCCCHHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKL-T----EAFEPKAWVCVSHDFDVLRISKAILESITL 237 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~-~----~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~ 237 (1402)
+.-.++.|+|.+|.|||||+..++-... . ..=..++|++....++.++ +.++++.++.
T Consensus 116 ~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~~f~~er-i~~ia~~~g~ 178 (337)
T PTZ00035 116 ETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEGTFRPER-IVQIAERFGL 178 (337)
T ss_pred CCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccCCCCHHH-HHHHHHHhCC
Confidence 4457999999999999999998864321 0 1123466999888788776 3445555543
No 381
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=93.58 E-value=0.023 Score=59.17 Aligned_cols=88 Identities=20% Similarity=0.191 Sum_probs=63.7
Q ss_pred cccccccccceeccCcccc-----ccchhhhcCCCCcEEecCCccccc----cCc-------hhhhcccccccccccCcc
Q 000594 588 SIGCLKHLRYLNFSNSWIQ-----CLPEVITSLFNLEILILSNCWFLL----KLP-------SSIGNLVNLHHLDIEGAY 651 (1402)
Q Consensus 588 ~i~~l~~Lr~L~Ls~~~i~-----~lp~~i~~L~~L~~LdLs~~~~~~----~lP-------~~i~~L~~L~~L~l~~~~ 651 (1402)
.+..+..+..++||+|.|. .+.+.|.+-.+|+.-+++.- +++ .+| +.+-++++|+..+|+.|.
T Consensus 25 el~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNA 103 (388)
T COG5238 25 ELEMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDA-FTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNA 103 (388)
T ss_pred HHHhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhh-hhcccHHHHHHHHHHHHHHHhcCCcceeeeccccc
Confidence 3445788999999999887 45567888899999999864 332 233 345678999999999998
Q ss_pred cccccccC----cccccccccccceecCC
Q 000594 652 QLCELPLG----MKELKCLRTLTNFIVGK 676 (1402)
Q Consensus 652 ~l~~lp~~----i~~L~~L~~L~~~~~~~ 676 (1402)
+....|.. |++-+.|.+|....++.
T Consensus 104 fg~~~~e~L~d~is~~t~l~HL~l~NnGl 132 (388)
T COG5238 104 FGSEFPEELGDLISSSTDLVHLKLNNNGL 132 (388)
T ss_pred cCcccchHHHHHHhcCCCceeEEeecCCC
Confidence 66666654 56667788876554443
No 382
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=93.56 E-value=0.61 Score=57.31 Aligned_cols=135 Identities=19% Similarity=0.135 Sum_probs=74.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
...+.+-++|++|.|||.||+++++. ....|- .+... +++.... ......+...+....+.
T Consensus 274 ~~~~giLl~GpPGtGKT~lAkava~~-~~~~fi-----~v~~~--------~l~sk~v-----Gesek~ir~~F~~A~~~ 334 (494)
T COG0464 274 RPPKGVLLYGPPGTGKTLLAKAVALE-SRSRFI-----SVKGS--------ELLSKWV-----GESEKNIRELFEKARKL 334 (494)
T ss_pred CCCCeeEEECCCCCCHHHHHHHHHhh-CCCeEE-----EeeCH--------HHhcccc-----chHHHHHHHHHHHHHcC
Confidence 45568999999999999999999984 333342 22211 1111100 01112223334444468
Q ss_pred CeEEEEEeCCCc-----C-C-----hhhHHHhhcccCCCC--CCcEEEEEccchhhhhhc-CC--CcceeecccCCChhh
Q 000594 259 KKFLIVLDDVWS-----E-R-----YDLWQALKSPFMAGA--PGSRIIVTTRSMDVASTM-GS--GKNYELELKLLSDDD 322 (1402)
Q Consensus 259 k~~LlVlDdv~~-----~-~-----~~~~~~~~~~l~~~~--~gs~iivTtR~~~v~~~~-~~--~~~~~~~l~~L~~~~ 322 (1402)
.+..|++|.+.. . . ......+...+.... .+..||-||-..+..+.. .. .-...+.+++-+.++
T Consensus 335 ~p~iiFiDEiDs~~~~r~~~~~~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld~a~lR~gRfd~~i~v~~pd~~~ 414 (494)
T COG0464 335 APSIIFIDEIDSLASGRGPSEDGSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLDPALLRPGRFDRLIYVPLPDLEE 414 (494)
T ss_pred CCcEEEEEchhhhhccCCCCCchHHHHHHHHHHHHhcCCCccCceEEEecCCCccccCHhhcccCccceEeecCCCCHHH
Confidence 899999999832 0 0 012333444443222 333455555544433321 11 112334588888999
Q ss_pred HHHHHHHhhc
Q 000594 323 RWSVFVNHAF 332 (1402)
Q Consensus 323 ~~~lf~~~a~ 332 (1402)
..+.|..+.-
T Consensus 415 r~~i~~~~~~ 424 (494)
T COG0464 415 RLEIFKIHLR 424 (494)
T ss_pred HHHHHHHHhc
Confidence 9999998874
No 383
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=93.56 E-value=0.43 Score=60.04 Aligned_cols=158 Identities=20% Similarity=0.196 Sum_probs=79.3
Q ss_pred ccccchHHHHHHHHHHh---cCCC---CCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHH
Q 000594 155 AVYGRDEDKARILDMVL---ENDP---SDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRIS 228 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L~---~~~~---~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~ 228 (1402)
++.|.+..++++.+.+. .... -...-.+-|.++|++|.|||++|+.++... ...| +.++.. ++.
T Consensus 153 di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~-~~~f-----~~is~~----~~~ 222 (644)
T PRK10733 153 DVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEA-KVPF-----FTISGS----DFV 222 (644)
T ss_pred HHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHc-CCCE-----EEEehH----HhH
Confidence 46677766655544332 2110 000112348899999999999999998752 2222 222211 111
Q ss_pred HHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcCC----------hhhHHHhhccc----CC--CCCCcEE
Q 000594 229 KAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSER----------YDLWQALKSPF----MA--GAPGSRI 292 (1402)
Q Consensus 229 ~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~----------~~~~~~~~~~l----~~--~~~gs~i 292 (1402)
..... .....+...+.......+.+|++|+++.-. ...++.....+ .. ...+.-|
T Consensus 223 ----~~~~g-----~~~~~~~~~f~~a~~~~P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~viv 293 (644)
T PRK10733 223 ----EMFVG-----VGASRVRDMFEQAKKAAPCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIV 293 (644)
T ss_pred ----Hhhhc-----ccHHHHHHHHHHHHhcCCcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeE
Confidence 11100 111222333334444678899999984310 01222222221 11 1234556
Q ss_pred EEEccchhhhhhcCC---CcceeecccCCChhhHHHHHHHhh
Q 000594 293 IVTTRSMDVASTMGS---GKNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 293 ivTtR~~~v~~~~~~---~~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
|.||...+..+..-. .-.+.+.++..+.++-.+++..+.
T Consensus 294 IaaTN~p~~lD~Al~RpgRfdr~i~v~~Pd~~~R~~Il~~~~ 335 (644)
T PRK10733 294 IAATNRPDVLDPALLRPGRFDRQVVVGLPDVRGREQILKVHM 335 (644)
T ss_pred EEecCChhhcCHHHhCCcccceEEEcCCCCHHHHHHHHHHHh
Confidence 667777664432211 123445577777777777887766
No 384
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=93.54 E-value=0.17 Score=58.10 Aligned_cols=82 Identities=21% Similarity=0.296 Sum_probs=49.8
Q ss_pred CCccccchHHHHHHHHHHhcC--------CCCCCCCcEEEEEEccCCChHHHHHHHHHccccccc---cCceeEEEe-CC
Q 000594 153 EPAVYGRDEDKARILDMVLEN--------DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEA---FEPKAWVCV-SH 220 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~--------~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~---f~~~~wv~~-~~ 220 (1402)
+..++|.++.+..+..++... ........+.|.++|++|+|||++|+.+.... ... ++...|... -.
T Consensus 14 d~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l-~~~fi~vD~t~f~e~Gyv 92 (443)
T PRK05201 14 DKYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLA-NAPFIKVEATKFTEVGYV 92 (443)
T ss_pred ccccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHh-CChheeecchhhccCCcc
Confidence 345889999998888777431 00000123678999999999999999998652 222 233222222 12
Q ss_pred CCCHHHHHHHHHHHh
Q 000594 221 DFDVLRISKAILESI 235 (1402)
Q Consensus 221 ~~~~~~~~~~i~~~~ 235 (1402)
..+...+.+++.+..
T Consensus 93 G~d~e~~ir~L~~~A 107 (443)
T PRK05201 93 GRDVESIIRDLVEIA 107 (443)
T ss_pred cCCHHHHHHHHHHHH
Confidence 335566666665544
No 385
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=93.52 E-value=0.085 Score=51.68 Aligned_cols=39 Identities=26% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH 220 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 220 (1402)
++|.|+|..|+|||||++.+.+...+..+...+..+...
T Consensus 1 pvv~VvG~~~sGKTTl~~~Li~~l~~~g~~v~~ik~~~~ 39 (140)
T PF03205_consen 1 PVVQVVGPKNSGKTTLIRKLINELKRRGYRVAVIKHTDH 39 (140)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEE-ST
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhHcCCceEEEEEccC
Confidence 379999999999999999999876656666665666554
No 386
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=93.51 E-value=0.11 Score=64.15 Aligned_cols=75 Identities=15% Similarity=0.098 Sum_probs=55.6
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
..++|.++.++.+...+... +.+.++|.+|+||||+|+.+.+..-..+++..+|..-+ ..+....++.+..
T Consensus 31 ~~vigq~~a~~~L~~~~~~~--------~~~l~~G~~G~GKttla~~l~~~l~~~~~~~~~~~~np-~~~~~~~~~~v~~ 101 (637)
T PRK13765 31 DQVIGQEHAVEVIKKAAKQR--------RHVMMIGSPGTGKSMLAKAMAELLPKEELQDILVYPNP-EDPNNPKIRTVPA 101 (637)
T ss_pred HHcCChHHHHHHHHHHHHhC--------CeEEEECCCCCcHHHHHHHHHHHcChHhHHHheEeeCC-CcchHHHHHHHHH
Confidence 46889998888887776432 36889999999999999998875444556778887653 3356677777776
Q ss_pred HhcC
Q 000594 234 SITL 237 (1402)
Q Consensus 234 ~~~~ 237 (1402)
+.+.
T Consensus 102 ~~G~ 105 (637)
T PRK13765 102 GKGK 105 (637)
T ss_pred hcCH
Confidence 6553
No 387
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=93.47 E-value=0.33 Score=57.27 Aligned_cols=127 Identities=25% Similarity=0.393 Sum_probs=68.6
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHH-HHHHHHccccccccCceeEEEeCCCCC--HHHHHHHHHHHhcCC
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTT-LAQEVYNDKLTEAFEPKAWVCVSHDFD--VLRISKAILESITLS 238 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTt-La~~v~~~~~~~~f~~~~wv~~~~~~~--~~~~~~~i~~~~~~~ 238 (1402)
-+++|++.+.. -.||.|+|..|.|||| ||+.+|.+- |...--|-+.|.-. ...+.+.+.+.++..
T Consensus 360 ~R~~ll~~ir~--------n~vvvivgETGSGKTTQl~QyL~edG----Y~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~ 427 (1042)
T KOG0924|consen 360 CRDQLLSVIRE--------NQVVVIVGETGSGKTTQLAQYLYEDG----YADNGMIGCTQPRRVAAISVAKRVAEEMGVT 427 (1042)
T ss_pred HHHHHHHHHhh--------CcEEEEEecCCCCchhhhHHHHHhcc----cccCCeeeecCchHHHHHHHHHHHHHHhCCc
Confidence 34455555533 2599999999999998 777777642 22112334444433 445566777777543
Q ss_pred CCC----------c----------CchHHHHHHHHHHhcCCeEEEEEeCCCcCCh--hhHHHhhcccCCCCCCcEEEEEc
Q 000594 239 PCD----------L----------KDLNSVQLKLKEAVFKKKFLIVLDDVWSERY--DLWQALKSPFMAGAPGSRIIVTT 296 (1402)
Q Consensus 239 ~~~----------~----------~~~~~~~~~l~~~l~~k~~LlVlDdv~~~~~--~~~~~~~~~l~~~~~gs~iivTt 296 (1402)
-.+ . .+---+.+.|.+..-+|=-.||+|.+++... +..-.+..........-|+|||+
T Consensus 428 lG~~VGYsIRFEdvT~~~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtS 507 (1042)
T KOG0924|consen 428 LGDTVGYSIRFEDVTSEDTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTS 507 (1042)
T ss_pred cccccceEEEeeecCCCceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEee
Confidence 210 0 1111122333333334556899999976432 22222222222333567999998
Q ss_pred cchh
Q 000594 297 RSMD 300 (1402)
Q Consensus 297 R~~~ 300 (1402)
-..+
T Consensus 508 ATm~ 511 (1042)
T KOG0924|consen 508 ATMD 511 (1042)
T ss_pred cccc
Confidence 7644
No 388
>cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate.
Probab=93.45 E-value=0.81 Score=48.76 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+..
T Consensus 35 ~~~~i~G~nGsGKSTLl~~l~G 56 (207)
T cd03369 35 EKIGIVGRTGAGKSTLILALFR 56 (207)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999874
No 389
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=93.44 E-value=0.15 Score=47.71 Aligned_cols=48 Identities=15% Similarity=0.331 Sum_probs=33.1
Q ss_pred ccccchHHHHHHHHHH----hcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 155 AVYGRDEDKARILDMV----LENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 155 ~~vGr~~~~~~l~~~L----~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.++|..-..+.|++.+ ....+ .++-|++.+|.+|+|||-+|+.+++..
T Consensus 26 ~l~GQhla~~~v~~ai~~~l~~~~p---~KpLVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 26 NLFGQHLAVEVVVNAIKGHLANPNP---RKPLVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HccCcHHHHHHHHHHHHHHHcCCCC---CCCEEEEeecCCCCcHHHHHHHHHHHH
Confidence 3556555555555444 33322 667899999999999999888887653
No 390
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=93.44 E-value=0.088 Score=55.34 Aligned_cols=22 Identities=23% Similarity=0.225 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
++++|+|+.|.||||+.+.+.-
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~ 47 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGV 47 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHH
Confidence 6999999999999999999874
No 391
>PRK12597 F0F1 ATP synthase subunit beta; Provisional
Probab=93.42 E-value=0.14 Score=60.25 Aligned_cols=87 Identities=20% Similarity=0.203 Sum_probs=54.8
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
.-++|.|.+|+|||||+.++.+...+.+-+.++++-+.+. -.+.++..++...-..... +..... ..
T Consensus 144 QR~gIfa~~G~GKt~Ll~~~~~~~~~~~~dv~V~~liGER~rEv~ef~~~~~~~~~l~rsvvv~atsd~~~~~R~~a~~~ 223 (461)
T PRK12597 144 GKTGLFGGAGVGKTVLMMELIFNISKQHSGSSVFAGVGERSREGHELYHEMKESGVLDKTVMVYGQMNEPPGARMRVVLT 223 (461)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhhCCCEEEEEcCCcchHHHHHHHHHHHhcCCcceeEEEecCCCCCHHHHHHHHHH
Confidence 4789999999999999999887643345566677766543 4556666666543221111 111111 12
Q ss_pred HHHHHHHh---cCCeEEEEEeCC
Q 000594 249 QLKLKEAV---FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l---~~k~~LlVlDdv 268 (1402)
...+.+++ .++.+|+++||+
T Consensus 224 a~tiAEyfrd~~G~~VLl~~Dsl 246 (461)
T PRK12597 224 GLTIAEYLRDEEKEDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCceEEEeccc
Confidence 23345555 379999999999
No 392
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=93.39 E-value=0.037 Score=51.85 Aligned_cols=27 Identities=41% Similarity=0.639 Sum_probs=18.4
Q ss_pred EEEEccCCChHHHHHHHHHccccccccC
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDKLTEAFE 211 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~f~ 211 (1402)
|.|+|.+|+||||+|+.++.. ....|.
T Consensus 2 vLleg~PG~GKT~la~~lA~~-~~~~f~ 28 (131)
T PF07726_consen 2 VLLEGVPGVGKTTLAKALARS-LGLSFK 28 (131)
T ss_dssp EEEES---HHHHHHHHHHHHH-TT--EE
T ss_pred EeeECCCccHHHHHHHHHHHH-cCCcee
Confidence 679999999999999999864 566664
No 393
>PF08298 AAA_PrkA: PrkA AAA domain; InterPro: IPR013153 This is entry is found at the N terminus of PrkA proteins - bacterial and archaeal serine kinases approximately 630 residues in length. PrkA possesses the A-motif of nucleotide-binding proteins and exhibits distant homology to eukaryotic protein kinases []. Note that many of these are hypothetical.
Probab=93.38 E-value=0.11 Score=57.81 Aligned_cols=51 Identities=25% Similarity=0.375 Sum_probs=43.4
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
+..|+|.++.++++++.+..........-+|+.++|+.|.||||||..+-+
T Consensus 60 ~~~~~G~~~~i~~lV~~fk~AA~g~~~~krIl~L~GPvg~GKSsl~~~Lk~ 110 (358)
T PF08298_consen 60 EDEFYGMEETIERLVNYFKSAAQGLEERKRILLLLGPVGGGKSSLAELLKR 110 (358)
T ss_pred cccccCcHHHHHHHHHHHHHHHhccCccceEEEEECCCCCCHHHHHHHHHH
Confidence 457999999999999999765544336678999999999999999999775
No 394
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.36 E-value=0.24 Score=51.29 Aligned_cols=22 Identities=32% Similarity=0.584 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.++.
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G 48 (178)
T cd03229 27 EIVALLGPSGSGKSTLLRCIAG 48 (178)
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999975
No 395
>PRK06762 hypothetical protein; Provisional
Probab=93.32 E-value=0.063 Score=54.97 Aligned_cols=23 Identities=35% Similarity=0.541 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
++|.|.|++|+||||+|+.+.+.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~ 25 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQER 25 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 68999999999999999998864
No 396
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=93.32 E-value=2.5 Score=46.84 Aligned_cols=69 Identities=12% Similarity=0.057 Sum_probs=44.5
Q ss_pred CCeEEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccc-hhhhhhcCCCcceeecccCCChhhHHHHHH
Q 000594 258 KKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS-MDVASTMGSGKNYELELKLLSDDDRWSVFV 328 (1402)
Q Consensus 258 ~k~~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~-~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~ 328 (1402)
+++-++|+||+..-....+..+...+-.-..++.+|++|.+ ..+.....+. ...+.+.+ +.++..+.+.
T Consensus 103 ~~~kV~II~~ad~m~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SR-cq~i~f~~-~~~~~~~~L~ 172 (290)
T PRK07276 103 GKQQVFIIKDADKMHVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSR-TQIFHFPK-NEAYLIQLLE 172 (290)
T ss_pred CCcEEEEeehhhhcCHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHc-ceeeeCCC-cHHHHHHHHH
Confidence 56678999999776777888888888665566766666655 4455444332 33344655 5666556554
No 397
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=93.32 E-value=0.22 Score=52.12 Aligned_cols=37 Identities=32% Similarity=0.438 Sum_probs=26.8
Q ss_pred EEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD 221 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~ 221 (1402)
+.|.|.+|+|||++|.++.....+.. ..++|++....
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g-~~v~~~s~e~~ 38 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARG-EPGLYVTLEES 38 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCC-CcEEEEECCCC
Confidence 67899999999999999876533222 45678776543
No 398
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=93.29 E-value=0.25 Score=56.11 Aligned_cols=88 Identities=19% Similarity=0.160 Sum_probs=53.6
Q ss_pred cEEEEEEccCCChHHH-HHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcC
Q 000594 181 FRVIPLVGMGGIGKTT-LAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFK 258 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTt-La~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~ 258 (1402)
-++|++||+.|+|||| ||+..+.-.....=..++.|+... .....+-++..++-++.+-....+..++...+... ++
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~~vv~~~~el~~ai~~l-~~ 281 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPLEVVYSPKELAEAIEAL-RD 281 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHHHHHHHHHhCCceEEecCHHHHHHHHHHh-hc
Confidence 5899999999999986 666655432233334566666542 23445556677777776655555666666665443 33
Q ss_pred CeEEEEEeCCCc
Q 000594 259 KKFLIVLDDVWS 270 (1402)
Q Consensus 259 k~~LlVlDdv~~ 270 (1402)
. =+|.+|=+..
T Consensus 282 ~-d~ILVDTaGr 292 (407)
T COG1419 282 C-DVILVDTAGR 292 (407)
T ss_pred C-CEEEEeCCCC
Confidence 3 3555676643
No 399
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=93.18 E-value=0.1 Score=51.55 Aligned_cols=24 Identities=46% Similarity=0.522 Sum_probs=21.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.||-|.|.+|.||||||+++.+..
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L 26 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRL 26 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHH
Confidence 689999999999999999998764
No 400
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=93.18 E-value=0.069 Score=53.06 Aligned_cols=22 Identities=41% Similarity=0.558 Sum_probs=19.6
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|.+.|++|+||||+|+.+...
T Consensus 1 lii~~G~pgsGKSt~a~~l~~~ 22 (143)
T PF13671_consen 1 LIILCGPPGSGKSTLAKRLAKR 22 (143)
T ss_dssp EEEEEESTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999998753
No 401
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=93.15 E-value=0.24 Score=50.08 Aligned_cols=119 Identities=18% Similarity=0.185 Sum_probs=60.8
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
.+++|+|..|.|||||++.+.... ......+++........ ........+..... ...-+...-.+...+...+-
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~--~~~~G~i~~~~~~~~~~--~~~~~~~~i~~~~q-lS~G~~~r~~l~~~l~~~~~ 100 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLL--KPTSGEILIDGKDIAKL--PLEELRRRIGYVPQ-LSGGQRQRVALARALLLNPD 100 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC--CCCccEEEECCEEcccC--CHHHHHhceEEEee-CCHHHHHHHHHHHHHhcCCC
Confidence 589999999999999999998642 22334444332111110 00111111211110 11122233345566666788
Q ss_pred EEEEeCCCcC-ChhhHHHhhcccCCC-CCCcEEEEEccchhhhhhc
Q 000594 262 LIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVASTM 305 (1402)
Q Consensus 262 LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~~~ 305 (1402)
++++|+.-.. +......+...+... ..+..|+++|.+.+.....
T Consensus 101 i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~ 146 (157)
T cd00267 101 LLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELA 146 (157)
T ss_pred EEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHh
Confidence 9999998432 222233333333211 1256788888776665543
No 402
>PRK12678 transcription termination factor Rho; Provisional
Probab=93.10 E-value=0.11 Score=61.31 Aligned_cols=99 Identities=19% Similarity=0.263 Sum_probs=53.5
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEE-EeCCCC-CHHHHHHHHHHHhcCCCCCc
Q 000594 165 RILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWV-CVSHDF-DVLRISKAILESITLSPCDL 242 (1402)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv-~~~~~~-~~~~~~~~i~~~~~~~~~~~ 242 (1402)
++++++..- ..-.-..|+|.+|+|||||++.+++.....+-++.++| -|.+.. .+.++.+.+-..+.....+.
T Consensus 405 RvIDll~PI-----GkGQR~LIvgpp~aGKTtLL~~IAn~i~~n~~~~~~ivvLIgERpeEVtdm~rsVkgeVVasT~D~ 479 (672)
T PRK12678 405 RVIDLIMPI-----GKGQRGLIVSPPKAGKTTILQNIANAITTNNPECHLMVVLVDERPEEVTDMQRSVKGEVIASTFDR 479 (672)
T ss_pred eeeeeeccc-----ccCCEeEEeCCCCCCHHHHHHHHHHHHhhcCCCeEEEEEEEeCchhhHHHHHHhccceEEEECCCC
Confidence 456666543 22246889999999999999999986433344444433 333332 23333332211111111111
Q ss_pred Cc-----hHHHHHHHHHHh--cCCeEEEEEeCC
Q 000594 243 KD-----LNSVQLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 243 ~~-----~~~~~~~l~~~l--~~k~~LlVlDdv 268 (1402)
.. ...+...+.+++ .++.+||++|++
T Consensus 480 p~~~~~~~a~~ai~~Ae~fre~G~dVlillDSl 512 (672)
T PRK12678 480 PPSDHTTVAELAIERAKRLVELGKDVVVLLDSI 512 (672)
T ss_pred CHHHHHHHHHHHHHHHHHHHHcCCCEEEEEeCc
Confidence 11 112222334444 589999999999
No 403
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.09 E-value=0.35 Score=54.78 Aligned_cols=26 Identities=35% Similarity=0.443 Sum_probs=22.9
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
...+++++|++|+||||++..++...
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l 138 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKY 138 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHH
Confidence 45899999999999999999988653
No 404
>cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=93.07 E-value=0.83 Score=47.47 Aligned_cols=23 Identities=26% Similarity=0.576 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||++.+..-
T Consensus 27 ~~~~i~G~nGsGKSTLl~~l~G~ 49 (182)
T cd03215 27 EIVGIAGLVGNGQTELAEALFGL 49 (182)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999863
No 405
>PRK09280 F0F1 ATP synthase subunit beta; Validated
Probab=93.04 E-value=0.31 Score=57.26 Aligned_cols=87 Identities=23% Similarity=0.221 Sum_probs=53.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
.-++|.|.+|+|||||+.++.......+=+.++++-+.+ ...+.++..++...-..... +..... ..
T Consensus 145 QR~gIfa~~GvGKt~Ll~~i~~~~~~~~~~v~V~~liGER~rEv~efi~~~~~~~~l~rsvvV~atsd~p~~~r~~a~~~ 224 (463)
T PRK09280 145 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVLDKTALVFGQMNEPPGARLRVALT 224 (463)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 478999999999999999887653222223456666654 34566677777654222111 111111 12
Q ss_pred HHHHHHHh---cCCeEEEEEeCC
Q 000594 249 QLKLKEAV---FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l---~~k~~LlVlDdv 268 (1402)
...+.+++ +++.+|+++||+
T Consensus 225 a~tiAEyfrd~~G~~VLll~Dsl 247 (463)
T PRK09280 225 GLTMAEYFRDVEGQDVLLFIDNI 247 (463)
T ss_pred HHHHHHHHHHhcCCceEEEecch
Confidence 22345555 579999999999
No 406
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.01 E-value=0.38 Score=46.61 Aligned_cols=13 Identities=15% Similarity=0.381 Sum_probs=4.1
Q ss_pred ccCCCCCCCeeecc
Q 000594 1326 GFQYLVSLEHLRVI 1339 (1402)
Q Consensus 1326 ~l~~l~~L~~L~l~ 1339 (1402)
.+.+. .|+.+.+.
T Consensus 99 ~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 99 SFSNC-NLKEINIP 111 (129)
T ss_dssp TTTT--T--EEE-T
T ss_pred hhcCC-CceEEEEC
Confidence 34443 45544443
No 407
>PRK03846 adenylylsulfate kinase; Provisional
Probab=93.01 E-value=0.18 Score=53.24 Aligned_cols=26 Identities=27% Similarity=0.351 Sum_probs=22.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+..+|.|+|++|.||||+|+.+...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~ 47 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEA 47 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHH
Confidence 44579999999999999999998864
No 408
>COG2842 Uncharacterized ATPase, putative transposase [General function prediction only]
Probab=92.94 E-value=1.9 Score=46.78 Aligned_cols=96 Identities=16% Similarity=0.171 Sum_probs=63.4
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeE
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKF 261 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~ 261 (1402)
+.+.++|+.|+|||+-++.+++.. +...-+..+..+....++..+........ ..........+...+++..-
T Consensus 95 ~l~~vyg~~g~gKt~a~~~y~~s~-----p~~~l~~~~p~~~a~~~i~~i~~~~~~~~--~~~~~d~~~~~~~~l~~~~~ 167 (297)
T COG2842 95 SLVVVYGYAGLGKTQAAKNYAPSN-----PNALLIEADPSYTALVLILIICAAAFGAT--DGTINDLTERLMIRLRDTVR 167 (297)
T ss_pred ceEEEeccccchhHHHHHhhcccC-----ccceeecCChhhHHHHHHHHHHHHHhccc--chhHHHHHHHHHHHHccCcc
Confidence 488899999999999999987642 22233445566666666666665554432 23344555566666788888
Q ss_pred EEEEeCCCcCChhhHHHhhcccC
Q 000594 262 LIVLDDVWSERYDLWQALKSPFM 284 (1402)
Q Consensus 262 LlVlDdv~~~~~~~~~~~~~~l~ 284 (1402)
++++|+...-.....+.+..-..
T Consensus 168 ~iivDEA~~L~~~ale~lr~i~d 190 (297)
T COG2842 168 LIIVDEADRLPYRALEELRRIHD 190 (297)
T ss_pred eeeeehhhccChHHHHHHHHHHH
Confidence 99999985544556666655443
No 409
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.93 E-value=0.36 Score=54.35 Aligned_cols=79 Identities=24% Similarity=0.319 Sum_probs=51.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCC-----cCchHHHHHHHHHHh
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCD-----LKDLNSVQLKLKEAV 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-----~~~~~~~~~~l~~~l 256 (1402)
.+|.|-|-+|||||||..++..+..... .+.+|+-.+ +..+ .+--++.++....+ ..+++.....+.+
T Consensus 94 s~iLIgGdPGIGKSTLLLQva~~lA~~~--~vLYVsGEE--S~~Q-iklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~-- 166 (456)
T COG1066 94 SVILIGGDPGIGKSTLLLQVAARLAKRG--KVLYVSGEE--SLQQ-IKLRADRLGLPTNNLYLLAETNLEDIIAELEQ-- 166 (456)
T ss_pred cEEEEccCCCCCHHHHHHHHHHHHHhcC--cEEEEeCCc--CHHH-HHHHHHHhCCCccceEEehhcCHHHHHHHHHh--
Confidence 6899999999999999999998743233 566665443 3333 23345566543332 2344544444443
Q ss_pred cCCeEEEEEeCC
Q 000594 257 FKKKFLIVLDDV 268 (1402)
Q Consensus 257 ~~k~~LlVlDdv 268 (1402)
.++-++|+|-+
T Consensus 167 -~~p~lvVIDSI 177 (456)
T COG1066 167 -EKPDLVVIDSI 177 (456)
T ss_pred -cCCCEEEEecc
Confidence 78889999998
No 410
>PRK11248 tauB taurine transporter ATP-binding subunit; Provisional
Probab=92.91 E-value=0.69 Score=51.08 Aligned_cols=23 Identities=30% Similarity=0.424 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||++.++.-
T Consensus 28 e~~~i~G~nGsGKSTLl~~l~Gl 50 (255)
T PRK11248 28 ELLVVLGPSGCGKTTLLNLIAGF 50 (255)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
No 411
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=92.91 E-value=0.073 Score=55.43 Aligned_cols=119 Identities=13% Similarity=0.056 Sum_probs=57.3
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC---CcCchHHHHHHHHHHhcC-
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC---DLKDLNSVQLKLKEAVFK- 258 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~l~~- 258 (1402)
++.|+|..|.||||+.+.+.-...-.+-.+.+|.....- ....+++..++.... .......-..++...+..
T Consensus 1 ~~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~----~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~ 76 (185)
T smart00534 1 VVIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAEL----PVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNA 76 (185)
T ss_pred CEEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEe----cccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhC
Confidence 467999999999999999874322111111111110000 001111111111110 111122222234444443
Q ss_pred -CeEEEEEeCCCcC-ChhhH----HHhhcccCCCCCCcEEEEEccchhhhhhcC
Q 000594 259 -KKFLIVLDDVWSE-RYDLW----QALKSPFMAGAPGSRIIVTTRSMDVASTMG 306 (1402)
Q Consensus 259 -k~~LlVlDdv~~~-~~~~~----~~~~~~l~~~~~gs~iivTtR~~~v~~~~~ 306 (1402)
++-++++|..-.. +...- ..+...+.. ..+..+|++|...++...+.
T Consensus 77 ~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~-~~~~~iii~TH~~~l~~~~~ 129 (185)
T smart00534 77 TENSLVLLDELGRGTSTYDGVAIAAAVLEYLLE-KIGALTLFATHYHELTKLAD 129 (185)
T ss_pred CCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHh-cCCCeEEEEecHHHHHHHhh
Confidence 8899999998442 11111 122222322 23678999999988776553
No 412
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.91 E-value=1.7 Score=46.52 Aligned_cols=178 Identities=20% Similarity=0.197 Sum_probs=90.9
Q ss_pred CccccchHHHHHHHHHHhcCC------CCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHH
Q 000594 154 PAVYGRDEDKARILDMVLEND------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRI 227 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~ 227 (1402)
.++-|-+..++.+.+...-+- ......-+-|.++|++|.||+-||++|+... ...| ++||.. ++
T Consensus 133 sDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEA-nSTF-----FSvSSS----DL 202 (439)
T KOG0739|consen 133 SDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEA-NSTF-----FSVSSS----DL 202 (439)
T ss_pred hhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhc-CCce-----EEeehH----HH
Confidence 346677777777776543210 0111345789999999999999999999753 2222 344432 11
Q ss_pred HHHHHHHhcCCCCCcCchHHHHHHHHHHh-cCCeEEEEEeCCCc------C-ChhhHHHhhccc----CC---CCCCcEE
Q 000594 228 SKAILESITLSPCDLKDLNSVQLKLKEAV-FKKKFLIVLDDVWS------E-RYDLWQALKSPF----MA---GAPGSRI 292 (1402)
Q Consensus 228 ~~~i~~~~~~~~~~~~~~~~~~~~l~~~l-~~k~~LlVlDdv~~------~-~~~~~~~~~~~l----~~---~~~gs~i 292 (1402)
. .... .+.+.+...+-+.- ..|+-+|++|.|.. + ..+.-..|..-| .. ...|.-|
T Consensus 203 v----SKWm------GESEkLVknLFemARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQMqGVG~d~~gvLV 272 (439)
T KOG0739|consen 203 V----SKWM------GESEKLVKNLFEMARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQMQGVGNDNDGVLV 272 (439)
T ss_pred H----HHHh------ccHHHHHHHHHHHHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHhhhccccCCCceEE
Confidence 1 1111 11233333333332 37899999999832 1 112222232222 21 2345556
Q ss_pred EEEccchhhhhhcCCC--cceeecccCCChhhHHH-HHHHhhcCCCCCCCCchHHHHHHHHHHHcCCC
Q 000594 293 IVTTRSMDVASTMGSG--KNYELELKLLSDDDRWS-VFVNHAFEGRDAGTHGNFESARQRVVEKCKGL 357 (1402)
Q Consensus 293 ivTtR~~~v~~~~~~~--~~~~~~l~~L~~~~~~~-lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~ 357 (1402)
+-.|..+-+.+..-.. .... .-||++..|.. +|.-+. +.... .--+.-.++++++..|.
T Consensus 273 LgATNiPw~LDsAIRRRFekRI--YIPLPe~~AR~~MF~lhl-G~tp~---~LT~~d~~eL~~kTeGy 334 (439)
T KOG0739|consen 273 LGATNIPWVLDSAIRRRFEKRI--YIPLPEAHARARMFKLHL-GDTPH---VLTEQDFKELARKTEGY 334 (439)
T ss_pred EecCCCchhHHHHHHHHhhcce--eccCCcHHHhhhhheecc-CCCcc---ccchhhHHHHHhhcCCC
Confidence 6677766555432111 1122 34788888876 454444 22211 11133345566666554
No 413
>cd01135 V_A-ATPase_B V/A-type ATP synthase (non-catalytic) subunit B. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria. This subfamily consists of the non-catalytic beta subunit.
Probab=92.90 E-value=0.26 Score=53.47 Aligned_cols=87 Identities=17% Similarity=0.227 Sum_probs=53.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc---ccccCceeEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CcCchH----
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKL---TEAFEPKAWVCVSHDF-DVLRISKAILESITLSPC-------DLKDLN---- 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~---~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-------~~~~~~---- 246 (1402)
+-++|.|-.|+|||+|+..+.++.. +.+-+.++++-+.+.. +..++..++.+.-..... +.....
T Consensus 70 QR~gIfgg~GvGKt~L~~~i~~~~~~~~~~~~~v~V~~~IGeR~rev~e~~~~~~~~~~l~~tv~v~~t~~~~~~~r~~a 149 (276)
T cd01135 70 QKIPIFSGSGLPHNELAAQIARQAGVVGEEENFAVVFAAMGITMEDARFFKDDFEETGALERVVLFLNLANDPTIERIIT 149 (276)
T ss_pred CEEEeecCCCCChhHHHHHHHHhhhccccCCCCEEEEEEeccccHHHHHHHHHhhhcCCcceEEEEEecCCCCHHHHHHH
Confidence 4689999999999999999887531 1234667777776554 566666666554221111 111111
Q ss_pred -HHHHHHHHHhc---CCeEEEEEeCC
Q 000594 247 -SVQLKLKEAVF---KKKFLIVLDDV 268 (1402)
Q Consensus 247 -~~~~~l~~~l~---~k~~LlVlDdv 268 (1402)
.....+.++++ ++++|+++||+
T Consensus 150 ~~~a~aiAEyfrd~~g~~VLl~~D~l 175 (276)
T cd01135 150 PRMALTTAEYLAYEKGKHVLVILTDM 175 (276)
T ss_pred HHHHHHHHHHHHhccCCeEEEEEcCh
Confidence 11223444442 78999999998
No 414
>COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.89 E-value=0.98 Score=46.87 Aligned_cols=64 Identities=13% Similarity=0.134 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHh---hcccCCCCCCcEEEEEccchhhhhhcCCCccee
Q 000594 247 SVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQAL---KSPFMAGAPGSRIIVTTRSMDVASTMGSGKNYE 312 (1402)
Q Consensus 247 ~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~---~~~l~~~~~gs~iivTtR~~~v~~~~~~~~~~~ 312 (1402)
....++.+.+-=++-+.|||...+- +.+..+.+ ...+. .+|+.++|.|-.+.++.......+|.
T Consensus 150 kKR~EilQ~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr--~~~~~~liITHy~rll~~i~pD~vhv 217 (251)
T COG0396 150 KKRNEILQLLLLEPKLAILDEPDSGLDIDALKIVAEGINALR--EEGRGVLIITHYQRLLDYIKPDKVHV 217 (251)
T ss_pred HHHHHHHHHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHh--cCCCeEEEEecHHHHHhhcCCCEEEE
Confidence 3344566666677889999998542 22333333 22333 34777888888889998887665554
No 415
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=92.88 E-value=0.76 Score=46.19 Aligned_cols=21 Identities=43% Similarity=0.610 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.|+|++|.||||+|+.+...
T Consensus 2 i~l~G~~GsGKstla~~la~~ 22 (154)
T cd00464 2 IVLIGMMGAGKTTVGRLLAKA 22 (154)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999998864
No 416
>TIGR01069 mutS2 MutS2 family protein. Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function.
Probab=92.87 E-value=0.12 Score=65.95 Aligned_cols=186 Identities=13% Similarity=0.139 Sum_probs=84.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC---CcCchHHHHHHHHHHhc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC---DLKDLNSVQLKLKEAVF 257 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~---~~~~~~~~~~~l~~~l~ 257 (1402)
.+++.|+|+.|.||||+.+.+.-..... ....+|.+...... ..+.++...++.... .......-...+...+.
T Consensus 322 ~~~liItGpNg~GKSTlLK~i~~~~l~a--q~G~~Vpa~~~~~~-~~~d~i~~~i~~~~si~~~LStfS~~m~~~~~il~ 398 (771)
T TIGR01069 322 KRVLAITGPNTGGKTVTLKTLGLLALMF--QSGIPIPANEHSEI-PYFEEIFADIGDEQSIEQNLSTFSGHMKNISAILS 398 (771)
T ss_pred ceEEEEECCCCCCchHHHHHHHHHHHHH--HhCCCccCCccccc-cchhheeeecChHhHHhhhhhHHHHHHHHHHHHHH
Confidence 3689999999999999999986531100 11112222111000 001111111110000 00011111112222222
Q ss_pred --CCeEEEEEeCCCcC-ChhhHHHh----hcccCCCCCCcEEEEEccchhhhhhcCCCc-ceeecccCCChhhHHHHHHH
Q 000594 258 --KKKFLIVLDDVWSE-RYDLWQAL----KSPFMAGAPGSRIIVTTRSMDVASTMGSGK-NYELELKLLSDDDRWSVFVN 329 (1402)
Q Consensus 258 --~k~~LlVlDdv~~~-~~~~~~~~----~~~l~~~~~gs~iivTtR~~~v~~~~~~~~-~~~~~l~~L~~~~~~~lf~~ 329 (1402)
.++-|+++|..-.. +......+ ...+. ..|+.+|+||-..++........ +....+. ++.+. .. |..
T Consensus 399 ~~~~~sLvLlDE~g~GtD~~eg~ala~aiLe~l~--~~g~~viitTH~~eL~~~~~~~~~v~~~~~~-~d~~~-l~-p~Y 473 (771)
T TIGR01069 399 KTTENSLVLFDELGAGTDPDEGSALAISILEYLL--KQNAQVLITTHYKELKALMYNNEGVENASVL-FDEET-LS-PTY 473 (771)
T ss_pred hcCCCcEEEecCCCCCCCHHHHHHHHHHHHHHHH--hcCCEEEEECChHHHHHHhcCCCCeEEeEEE-EcCCC-Cc-eEE
Confidence 57899999998542 22233333 22332 35789999999988765432221 1111111 11110 00 111
Q ss_pred hhcCCCCCCCCchHHHHHHHHHHHcCCChHHHHHHHhhhcCCCChhHHHHHhh
Q 000594 330 HAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTILD 382 (1402)
Q Consensus 330 ~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai~~~~~~l~~~~~~~~w~~~~~ 382 (1402)
+. ..+.+. ..-|-+|++++ |+|-.+.--|..+.... ..++..++.
T Consensus 474 kl-~~G~~g-----~S~a~~iA~~~-Glp~~ii~~A~~~~~~~-~~~~~~li~ 518 (771)
T TIGR01069 474 KL-LKGIPG-----ESYAFEIAQRY-GIPHFIIEQAKTFYGEF-KEEINVLIE 518 (771)
T ss_pred EE-CCCCCC-----CcHHHHHHHHh-CcCHHHHHHHHHHHHhh-HHHHHHHHH
Confidence 11 111111 23466677776 88888887777775432 234444443
No 417
>PRK03839 putative kinase; Provisional
Probab=92.86 E-value=0.073 Score=55.33 Aligned_cols=22 Identities=32% Similarity=0.632 Sum_probs=20.1
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.|.|+|++|+||||+|+.+++.
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~ 23 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEK 23 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4889999999999999999875
No 418
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=92.84 E-value=0.32 Score=47.12 Aligned_cols=15 Identities=13% Similarity=0.355 Sum_probs=7.0
Q ss_pred cccCCCCCCCeeecc
Q 000594 1325 KGFQYLVSLEHLRVI 1339 (1402)
Q Consensus 1325 ~~l~~l~~L~~L~l~ 1339 (1402)
..+..+++|+.+.+.
T Consensus 75 ~~F~~~~~l~~i~~~ 89 (129)
T PF13306_consen 75 NAFSNCTNLKNIDIP 89 (129)
T ss_dssp TTTTT-TTECEEEET
T ss_pred ccccccccccccccC
Confidence 344445555555553
No 419
>PRK00279 adk adenylate kinase; Reviewed
Probab=92.81 E-value=0.23 Score=53.33 Aligned_cols=22 Identities=32% Similarity=0.369 Sum_probs=19.4
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.|.|+|++|+||||+|+.++..
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~ 23 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEK 23 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3789999999999999998764
No 420
>TIGR03305 alt_F1F0_F1_bet alternate F1F0 ATPase, F1 subunit beta. A small number of taxonomically diverse prokaryotic species have what appears to be a second ATP synthase, in addition to the normal F1F0 ATPase in bacteria and A1A0 ATPase in archaea. These enzymes use ion gradients to synthesize ATP, and in principle may run in either direction. This model represents the F1 beta subunit of this apparent second ATP synthase.
Probab=92.80 E-value=0.17 Score=59.23 Aligned_cols=87 Identities=17% Similarity=0.242 Sum_probs=54.3
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCC-CHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDF-DVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
.-++|.|.+|+|||+|+.++.+...+.+-+.++++-+.+.. .+.++.+++...-..... +..... ..
T Consensus 139 Qr~~Ifg~~G~GKt~l~~~~~~~~~~~~~~v~V~~~iGeR~rEv~e~~~~~~~~~~l~rtvvv~~ts~~~~~~r~~~~~~ 218 (449)
T TIGR03305 139 GKAGLFGGAGVGKTVLLTEMIHNMVGQHQGVSIFCGIGERCREGEELYREMKEAGVLDNTVMVFGQMNEPPGARFRVGHT 218 (449)
T ss_pred CEEEeecCCCCChhHHHHHHHHHHHhcCCCEEEEEEeccCcHHHHHHHHHHhhccccceEEEEEeCCCCCHHHHHHHHHH
Confidence 47899999999999999998765333334677787776544 455666666543221111 111111 12
Q ss_pred HHHHHHHhc---CCeEEEEEeCC
Q 000594 249 QLKLKEAVF---KKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l~---~k~~LlVlDdv 268 (1402)
...+.++++ ++++|+++||+
T Consensus 219 a~tiAEyfrd~~G~~VLl~~Dsl 241 (449)
T TIGR03305 219 ALTMAEYFRDDEKQDVLLLIDNI 241 (449)
T ss_pred HHHHHHHHHHhcCCceEEEecCh
Confidence 233455553 69999999999
No 421
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=92.80 E-value=0.2 Score=55.14 Aligned_cols=24 Identities=38% Similarity=0.362 Sum_probs=18.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
..|.|.|.+|.||||+|+.+....
T Consensus 2 pLiil~G~P~SGKTt~a~~L~~~~ 25 (270)
T PF08433_consen 2 PLIILCGLPCSGKTTRAKELKKYL 25 (270)
T ss_dssp -EEEEE--TTSSHHHHHHHHHHHH
T ss_pred EEEEEEcCCCCcHHHHHHHHHHHH
Confidence 368899999999999999988653
No 422
>PLN02924 thymidylate kinase
Probab=92.79 E-value=0.39 Score=51.28 Aligned_cols=55 Identities=18% Similarity=0.173 Sum_probs=34.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.....|+|-|..|+||||+|+.+++......+....+-.-.......+..++++.
T Consensus 14 ~~g~~IviEGiDGsGKsTq~~~L~~~l~~~g~~v~~~~ep~~~~~~g~~ir~~l~ 68 (220)
T PLN02924 14 SRGALIVLEGLDRSGKSTQCAKLVSFLKGLGVAAELWRFPDRTTSVGQMISAYLS 68 (220)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCCceeeeCCCCCChHHHHHHHHHh
Confidence 3346899999999999999999987653344544322211222334444555444
No 423
>PRK06217 hypothetical protein; Validated
Probab=92.78 E-value=0.16 Score=52.81 Aligned_cols=23 Identities=30% Similarity=0.420 Sum_probs=20.6
Q ss_pred EEEEEccCCChHHHHHHHHHccc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
.|.|.|.+|.||||+|+++....
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48899999999999999998754
No 424
>TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit. Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes.
Probab=92.76 E-value=0.74 Score=49.73 Aligned_cols=22 Identities=36% Similarity=0.528 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+.-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G 48 (223)
T TIGR03740 27 SVYGLLGPNGAGKSTLLKMITG 48 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 4899999999999999999875
No 425
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=92.75 E-value=0.41 Score=50.40 Aligned_cols=41 Identities=22% Similarity=0.285 Sum_probs=27.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcccc-cccc--------CceeEEEeCCCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKL-TEAF--------EPKAWVCVSHDF 222 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~-~~~f--------~~~~wv~~~~~~ 222 (1402)
.++.|+|.+|+||||++..+..... ...| ..+.|+......
T Consensus 33 ~l~~i~g~~g~GKT~~~~~l~~~~~~g~~~~g~~~~~~~~Vl~i~~E~~~ 82 (193)
T PF13481_consen 33 ELTLIAGPPGSGKTTLALQLAAALATGRPFLGELPPRPGRVLYISLEDSE 82 (193)
T ss_dssp SEEEEEECSTSSHHHHHHHHHHHHHT---TT---------EEEEESSS-H
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhCCccCCcccccCceEEEEeccCCH
Confidence 3889999999999999999987652 2222 256677766653
No 426
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=92.73 E-value=0.32 Score=59.68 Aligned_cols=48 Identities=17% Similarity=0.226 Sum_probs=38.6
Q ss_pred CCccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
...++|+...+.++.+.+..-... ..-|.|+|..|+|||++|+.+++.
T Consensus 186 ~~~iig~s~~~~~~~~~i~~~a~~----~~pVlI~Ge~GtGK~~~A~~ih~~ 233 (509)
T PRK05022 186 EGEMIGQSPAMQQLKKEIEVVAAS----DLNVLILGETGVGKELVARAIHAA 233 (509)
T ss_pred CCceeecCHHHHHHHHHHHHHhCC----CCcEEEECCCCccHHHHHHHHHHh
Confidence 456899999999988888664322 235789999999999999999874
No 427
>PRK04040 adenylate kinase; Provisional
Probab=92.72 E-value=0.088 Score=54.68 Aligned_cols=23 Identities=30% Similarity=0.642 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+|+|+|++|+||||+++.+...
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~ 25 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEK 25 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHH
Confidence 58999999999999999998764
No 428
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=92.70 E-value=0.38 Score=52.29 Aligned_cols=42 Identities=19% Similarity=0.237 Sum_probs=30.2
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD 221 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~ 221 (1402)
+.-.++.|.|.+|.||||+|.++...... .-..++|++....
T Consensus 18 ~~G~~~~i~G~~G~GKT~l~~~~~~~~~~-~g~~~~~is~e~~ 59 (229)
T TIGR03881 18 PRGFFVAVTGEPGTGKTIFCLHFAYKGLR-DGDPVIYVTTEES 59 (229)
T ss_pred cCCeEEEEECCCCCChHHHHHHHHHHHHh-cCCeEEEEEccCC
Confidence 33479999999999999999987654322 2345778876443
No 429
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=92.68 E-value=0.46 Score=49.52 Aligned_cols=25 Identities=36% Similarity=0.457 Sum_probs=22.0
Q ss_pred CcEEEEEEccCCChHHHHHHHHHcc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
...++.|.|.+|.||||+|+.+...
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~ 41 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKK 41 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 3469999999999999999998864
No 430
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=92.66 E-value=0.67 Score=46.37 Aligned_cols=22 Identities=27% Similarity=0.605 Sum_probs=19.5
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
++.|+|++|+||||+|+.+...
T Consensus 1 li~l~G~~GsGKST~a~~l~~~ 22 (150)
T cd02021 1 IIVVMGVSGSGKSTVGKALAER 22 (150)
T ss_pred CEEEEcCCCCCHHHHHHHHHhh
Confidence 3678999999999999998764
No 431
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=92.60 E-value=1.6 Score=45.13 Aligned_cols=158 Identities=16% Similarity=0.226 Sum_probs=82.7
Q ss_pred ccccc-hHHHHHHHHHHhcCC-------CCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHH
Q 000594 155 AVYGR-DEDKARILDMVLEND-------PSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLR 226 (1402)
Q Consensus 155 ~~vGr-~~~~~~l~~~L~~~~-------~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~ 226 (1402)
++||+ +..+++|.+.+.-+- .-+-.+++-+.++|++|.|||-||++|+++ .++-|+.||..-
T Consensus 147 eMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLlaraVahh------t~c~firvsgse---- 216 (404)
T KOG0728|consen 147 EMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLLARAVAHH------TDCTFIRVSGSE---- 216 (404)
T ss_pred HHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHHHHHHHhh------cceEEEEechHH----
Confidence 35664 566666655442111 011245677889999999999999999975 245567777542
Q ss_pred HHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-----------Chhh---HHHhhcccCC--CCCCc
Q 000594 227 ISKAILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-----------RYDL---WQALKSPFMA--GAPGS 290 (1402)
Q Consensus 227 ~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-----------~~~~---~~~~~~~l~~--~~~gs 290 (1402)
+.+..+. .. ..-..++...-+ ..-+-+|+.|.+.+. +.+. .-++...+.. ..+.-
T Consensus 217 lvqk~ig----eg--srmvrelfvmar---ehapsiifmdeidsigs~r~e~~~ggdsevqrtmlellnqldgfeatkni 287 (404)
T KOG0728|consen 217 LVQKYIG----EG--SRMVRELFVMAR---EHAPSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLNQLDGFEATKNI 287 (404)
T ss_pred HHHHHhh----hh--HHHHHHHHHHHH---hcCCceEeeecccccccccccCCCCccHHHHHHHHHHHHhccccccccce
Confidence 1111111 00 000111111112 245667777877331 0010 1122223322 23456
Q ss_pred EEEEEccchhhhhhc--CCC-cceeecccCCChhhHHHHHHHhh
Q 000594 291 RIIVTTRSMDVASTM--GSG-KNYELELKLLSDDDRWSVFVNHA 331 (1402)
Q Consensus 291 ~iivTtR~~~v~~~~--~~~-~~~~~~l~~L~~~~~~~lf~~~a 331 (1402)
+||..|..-++.+.. ..+ -...++.++-+++.-.++++-|.
T Consensus 288 kvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihs 331 (404)
T KOG0728|consen 288 KVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHS 331 (404)
T ss_pred EEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhh
Confidence 788887765555432 222 23456677777777777776655
No 432
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=92.60 E-value=0.27 Score=54.28 Aligned_cols=41 Identities=20% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH 220 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 220 (1402)
+.-+++.|.|.+|+|||++|.+++....+ .=..+++++...
T Consensus 34 p~gs~~lI~G~pGtGKT~l~~qf~~~~a~-~Ge~vlyis~Ee 74 (259)
T TIGR03878 34 PAYSVINITGVSDTGKSLMVEQFAVTQAS-RGNPVLFVTVES 74 (259)
T ss_pred ECCcEEEEEcCCCCCHHHHHHHHHHHHHh-CCCcEEEEEecC
Confidence 34479999999999999999998654322 234677888764
No 433
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.56 E-value=0.6 Score=51.89 Aligned_cols=24 Identities=38% Similarity=0.582 Sum_probs=21.5
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
=+-|..+|++|.|||-||++|+..
T Consensus 245 WkgvLm~GPPGTGKTlLAKAvATE 268 (491)
T KOG0738|consen 245 WKGVLMVGPPGTGKTLLAKAVATE 268 (491)
T ss_pred cceeeeeCCCCCcHHHHHHHHHHh
Confidence 356889999999999999999975
No 434
>PRK08149 ATP synthase SpaL; Validated
Probab=92.55 E-value=0.33 Score=56.60 Aligned_cols=84 Identities=14% Similarity=0.212 Sum_probs=49.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeC-CCCCHHHHHHHHHHHhcCCC-------CCcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS-HDFDVLRISKAILESITLSP-------CDLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~-------~~~~~~~-----~~ 248 (1402)
..++|+|..|.|||||+..++... .-+.++...+. +..++.++..+......... .+..... ..
T Consensus 152 q~i~I~G~sG~GKTTLl~~i~~~~---~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd~p~~~r~~a~~~ 228 (428)
T PRK08149 152 QRMGIFASAGCGKTSLMNMLIEHS---EADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSDFSSVDRCNAALV 228 (428)
T ss_pred CEEEEECCCCCChhHHHHHHhcCC---CCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCCCCHHHHHhHHHH
Confidence 589999999999999999988642 22333333333 34456666666665432211 1111111 11
Q ss_pred HHHHHHHh--cCCeEEEEEeCC
Q 000594 249 QLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l--~~k~~LlVlDdv 268 (1402)
...+.+++ ++|++||++||+
T Consensus 229 a~tiAE~fr~~G~~Vll~~Dsl 250 (428)
T PRK08149 229 ATTVAEYFRDQGKRVVLFIDSM 250 (428)
T ss_pred HHHHHHHHHHcCCCEEEEccch
Confidence 22233333 489999999999
No 435
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.55 E-value=0.74 Score=55.06 Aligned_cols=31 Identities=32% Similarity=0.378 Sum_probs=24.8
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHcccccccc
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF 210 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f 210 (1402)
..++-|..+|++|.|||++|+++++. .+-.|
T Consensus 466 ~ppkGVLlyGPPGC~KT~lAkalAne-~~~nF 496 (693)
T KOG0730|consen 466 SPPKGVLLYGPPGCGKTLLAKALANE-AGMNF 496 (693)
T ss_pred CCCceEEEECCCCcchHHHHHHHhhh-hcCCe
Confidence 44567889999999999999999985 33334
No 436
>COG1428 Deoxynucleoside kinases [Nucleotide transport and metabolism]
Probab=92.52 E-value=0.086 Score=53.79 Aligned_cols=23 Identities=48% Similarity=0.592 Sum_probs=21.4
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+|+|-||=|+||||||+.+.++
T Consensus 5 ~~IvI~G~IG~GKSTLa~~La~~ 27 (216)
T COG1428 5 MVIVIEGMIGAGKSTLAQALAEH 27 (216)
T ss_pred cEEEEecccccCHHHHHHHHHHH
Confidence 58999999999999999999875
No 437
>PRK04328 hypothetical protein; Provisional
Probab=92.50 E-value=0.34 Score=53.15 Aligned_cols=41 Identities=27% Similarity=0.402 Sum_probs=30.8
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD 221 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~ 221 (1402)
.-.++.|.|.+|.|||++|.++..... ..-..++|++....
T Consensus 22 ~gs~ili~G~pGsGKT~l~~~fl~~~~-~~ge~~lyis~ee~ 62 (249)
T PRK04328 22 ERNVVLLSGGPGTGKSIFSQQFLWNGL-QMGEPGVYVALEEH 62 (249)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHH-hcCCcEEEEEeeCC
Confidence 347999999999999999999765432 23456788887664
No 438
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=92.50 E-value=0.074 Score=49.50 Aligned_cols=22 Identities=50% Similarity=0.640 Sum_probs=19.3
Q ss_pred EEEEccCCChHHHHHHHHHccc
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
|-|+|.+|+|||++|+.++.+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l 22 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDL 22 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 4689999999999999988763
No 439
>COG3640 CooC CO dehydrogenase maturation factor [Cell division and chromosome partitioning]
Probab=92.48 E-value=0.16 Score=52.48 Aligned_cols=42 Identities=29% Similarity=0.438 Sum_probs=28.9
Q ss_pred EEEEEccCCChHHHHHHHHHccccccc-cCceeEEEeCCCCCHH
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEA-FEPKAWVCVSHDFDVL 225 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~-f~~~~wv~~~~~~~~~ 225 (1402)
.|+|.|-||+||||+|..+......++ |+ +.-|+...+++..
T Consensus 2 kIaI~GKGG~GKTtiaalll~~l~~~~~~~-VLvVDaDpd~nL~ 44 (255)
T COG3640 2 KIAITGKGGVGKTTIAALLLKRLLSKGGYN-VLVVDADPDSNLP 44 (255)
T ss_pred eEEEecCCCccHHHHHHHHHHHHHhcCCce-EEEEeCCCCCChH
Confidence 589999999999999998665554433 43 4445555555543
No 440
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=92.48 E-value=0.1 Score=54.77 Aligned_cols=24 Identities=29% Similarity=0.475 Sum_probs=21.4
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..+|.|+|++|+||||+|+.+...
T Consensus 3 ~~ii~i~G~~GsGKsTl~~~l~~~ 26 (188)
T TIGR01360 3 CKIIFIVGGPGSGKGTQCEKIVEK 26 (188)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 468999999999999999998854
No 441
>PRK05973 replicative DNA helicase; Provisional
Probab=92.46 E-value=0.47 Score=50.82 Aligned_cols=48 Identities=15% Similarity=0.133 Sum_probs=32.3
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
-.++.|.|.+|+|||++|.++.....+. =..+++++.... ..++...+
T Consensus 64 Gsl~LIaG~PG~GKT~lalqfa~~~a~~-Ge~vlyfSlEes--~~~i~~R~ 111 (237)
T PRK05973 64 GDLVLLGARPGHGKTLLGLELAVEAMKS-GRTGVFFTLEYT--EQDVRDRL 111 (237)
T ss_pred CCEEEEEeCCCCCHHHHHHHHHHHHHhc-CCeEEEEEEeCC--HHHHHHHH
Confidence 3589999999999999999987653332 234666665544 34444443
No 442
>cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor. The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=92.45 E-value=0.78 Score=50.20 Aligned_cols=23 Identities=39% Similarity=0.560 Sum_probs=21.0
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|+|||||++.+...
T Consensus 26 e~~~i~G~NGsGKSTLlk~L~G~ 48 (246)
T cd03237 26 EVIGILGPNGIGKTTFIKMLAGV 48 (246)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999764
No 443
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=92.40 E-value=0.21 Score=51.51 Aligned_cols=22 Identities=41% Similarity=0.662 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKttla~~l~~~ 22 (179)
T cd02028 1 VVGIAGPSGSGKTTFAKKLSNQ 22 (179)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998864
No 444
>cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate.
Probab=92.40 E-value=0.94 Score=48.89 Aligned_cols=22 Identities=27% Similarity=0.549 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+.-
T Consensus 31 e~~~i~G~nGsGKSTLl~~l~G 52 (221)
T cd03244 31 EKVGIVGRTGSGKSSLLLALFR 52 (221)
T ss_pred CEEEEECCCCCCHHHHHHHHHc
Confidence 5899999999999999999875
No 445
>PRK08927 fliI flagellum-specific ATP synthase; Validated
Probab=92.36 E-value=0.33 Score=56.71 Aligned_cols=84 Identities=18% Similarity=0.194 Sum_probs=49.0
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
..++|+|..|+|||||++.+++.. ..+.++++-+.+. -.+.++..+.+..-+.... +..... ..
T Consensus 159 qri~I~G~sG~GKTtLL~~I~~~~---~~d~~v~~~iGER~rEv~ef~~~~l~~~~l~rsvvv~atsd~~~~~r~~a~~~ 235 (442)
T PRK08927 159 QRMGIFAGSGVGKSVLLSMLARNA---DADVSVIGLIGERGREVQEFLQDDLGPEGLARSVVVVATSDEPALMRRQAAYL 235 (442)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc---CCCEEEEEEEecCcHHHHHHHHHHhhccCceeEEEEEECCCCCHHHHHHHHHH
Confidence 588999999999999999988642 2234444545433 3455555555443221111 111111 11
Q ss_pred HHHHHHHh--cCCeEEEEEeCC
Q 000594 249 QLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l--~~k~~LlVlDdv 268 (1402)
...+.+++ +++.+|+++||+
T Consensus 236 a~tiAEyfrd~G~~Vll~~Dsl 257 (442)
T PRK08927 236 TLAIAEYFRDQGKDVLCLMDSV 257 (442)
T ss_pred HHHHHHHHHHCCCcEEEEEeCc
Confidence 22234444 489999999999
No 446
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=92.36 E-value=0.012 Score=59.88 Aligned_cols=88 Identities=18% Similarity=0.166 Sum_probs=76.7
Q ss_pred ccccc-ccccccccccceeccCccccccchhhhcCCCCcEEecCCccccccCchhhhcccccccccccCcccccccccCc
Q 000594 582 ITEVP-VSIGCLKHLRYLNFSNSWIQCLPEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEGAYQLCELPLGM 660 (1402)
Q Consensus 582 i~~lp-~~i~~l~~Lr~L~Ls~~~i~~lp~~i~~L~~L~~LdLs~~~~~~~lP~~i~~L~~L~~L~l~~~~~l~~lp~~i 660 (1402)
++++| ..|.....-.+||++.|.+..+-..|+.++.|..||++.| -+..+|..++.+..++++++..|. ....|.++
T Consensus 30 ~s~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~skn-q~~~~~~d~~q~~e~~~~~~~~n~-~~~~p~s~ 107 (326)
T KOG0473|consen 30 LSEIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKN-QIKFLPKDAKQQRETVNAASHKNN-HSQQPKSQ 107 (326)
T ss_pred hcccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHh-hHhhChhhHHHHHHHHHHHhhccc-hhhCCccc
Confidence 44554 3466778899999999999999888999999999999998 578899999999999999998876 89999999
Q ss_pred ccccccccccc
Q 000594 661 KELKCLRTLTN 671 (1402)
Q Consensus 661 ~~L~~L~~L~~ 671 (1402)
++++.++.++.
T Consensus 108 ~k~~~~k~~e~ 118 (326)
T KOG0473|consen 108 KKEPHPKKNEQ 118 (326)
T ss_pred cccCCcchhhh
Confidence 99999988863
No 447
>COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only]
Probab=92.35 E-value=1 Score=52.22 Aligned_cols=22 Identities=32% Similarity=0.561 Sum_probs=19.9
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|+.|.||||||+.+.-
T Consensus 363 ~~lgIIGPSgSGKSTLaR~lvG 384 (580)
T COG4618 363 EALGIIGPSGSGKSTLARLLVG 384 (580)
T ss_pred ceEEEECCCCccHHHHHHHHHc
Confidence 4899999999999999999853
No 448
>TIGR01039 atpD ATP synthase, F1 beta subunit. The sequences of ATP synthase F1 alpha and beta subunits are related and both contain a nucleotide-binding site for ATP and ADP. They have a common amino terminal domain but vary at the C-terminus. The beta chain has catalytic activity, while the alpha chain is a regulatory subunit. Proton translocating ATP synthase, F1 beta subunit is homologous to proton translocating ATP synthase archaeal/vacuolar(V1), A subunit.
Probab=92.33 E-value=0.31 Score=56.94 Aligned_cols=87 Identities=22% Similarity=0.227 Sum_probs=53.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCC-------CCcCchHH-----H
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSP-------CDLKDLNS-----V 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~-------~~~~~~~~-----~ 248 (1402)
.-++|.|.+|+|||||+.++.....+.+=+.++++-+.+ ...+.+++.++...-.... .+...... .
T Consensus 144 Qr~~If~~~G~GKt~L~~~~~~~~~~~~~~v~V~alIGER~rEv~ef~~~~~~~~~l~rtvvV~atsd~p~~~R~~a~~~ 223 (461)
T TIGR01039 144 GKIGLFGGAGVGKTVLIQELINNIAKEHGGYSVFAGVGERTREGNDLYHEMKESGVIDKTALVYGQMNEPPGARMRVALT 223 (461)
T ss_pred CEEEeecCCCCChHHHHHHHHHHHHhcCCCeEEEEEecCCchHHHHHHHHHHhcCCcceeEEEEECCCCCHHHHHHHHHH
Confidence 478999999999999999988653333333566666654 3456667776654322111 01111111 2
Q ss_pred HHHHHHHh---cCCeEEEEEeCC
Q 000594 249 QLKLKEAV---FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l---~~k~~LlVlDdv 268 (1402)
...+.+++ +++.+|+|+||+
T Consensus 224 a~tiAEyfrd~~G~~VLll~Dsl 246 (461)
T TIGR01039 224 GLTMAEYFRDEQGQDVLLFIDNI 246 (461)
T ss_pred HHHHHHHHHHhcCCeeEEEecch
Confidence 23345555 468999999999
No 449
>cd01134 V_A-ATPase_A V/A-type ATP synthase catalytic subunit A. These ATPases couple ATP hydrolysis to the build up of a H+ gradient, but V-type ATPases do not catalyze the reverse reaction. The Vacuolar (V-type) ATPase is found in the membranes of vacuoles, the golgi apparatus and in other coated vesicles in eukaryotes. Archaea have a protein which is similar in sequence to V-ATPases, but functions like an F-ATPase (called A-ATPase). A similar protein is also found in a few bacteria.
Probab=92.32 E-value=0.92 Score=50.88 Aligned_cols=60 Identities=17% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHH
Q 000594 165 RILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAIL 232 (1402)
Q Consensus 165 ~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~ 232 (1402)
++++.+..-. +-..++|.|..|+|||+|++++.+.. +-+.++++-+.+. ..+.+++.++-
T Consensus 146 rvID~l~Pi~-----kGqr~~I~G~~G~GKT~L~~~Iak~~---~~dvvVyv~iGERg~Ev~e~l~ef~ 206 (369)
T cd01134 146 RVLDTLFPVV-----KGGTAAIPGPFGCGKTVIQQSLSKYS---NSDIVIYVGCGERGNEMTEVLEEFP 206 (369)
T ss_pred hhhhcccccc-----CCCEEEEECCCCCChHHHHHHHHhCC---CCCEEEEEEeCCChHHHHHHHHHHH
Confidence 4556554432 22478999999999999999998752 3346677777544 45566666654
No 450
>PRK08972 fliI flagellum-specific ATP synthase; Validated
Probab=92.32 E-value=0.45 Score=55.39 Aligned_cols=84 Identities=17% Similarity=0.164 Sum_probs=49.5
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC-CCHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD-FDVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~-~~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
..++|+|..|+|||||++.++... ..+.++.+-+.+. -.+.++..+++..-+.... +..... ..
T Consensus 163 qrigI~G~sG~GKSTLL~~I~~~~---~~dv~Vi~lIGER~rEv~efi~~~l~~~~l~rtvvv~atsd~p~~~R~~a~~~ 239 (444)
T PRK08972 163 QRMGLFAGSGVGKSVLLGMMTRGT---TADVIVVGLVGERGREVKEFIEEILGEEGRARSVVVAAPADTSPLMRLKGCET 239 (444)
T ss_pred CEEEEECCCCCChhHHHHHhccCC---CCCEEEEEEEcCChHHHHHHHHHhhccCCcccEEEEEECCCCCHHHHHHHHHH
Confidence 579999999999999999988632 2244555555543 3455566665443221111 111111 11
Q ss_pred HHHHHHHh--cCCeEEEEEeCC
Q 000594 249 QLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l--~~k~~LlVlDdv 268 (1402)
...+.+++ +++.+|+++||+
T Consensus 240 A~tiAEyfrd~G~~VLl~~Dsl 261 (444)
T PRK08972 240 ATTIAEYFRDQGLNVLLLMDSL 261 (444)
T ss_pred HHHHHHHHHHcCCCEEEEEcCh
Confidence 12233444 589999999999
No 451
>PRK10463 hydrogenase nickel incorporation protein HypB; Provisional
Probab=92.27 E-value=0.39 Score=52.74 Aligned_cols=87 Identities=18% Similarity=0.165 Sum_probs=47.0
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCC-------cCchHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCD-------LKDLNSVQLK 251 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~-------~~~~~~~~~~ 251 (1402)
.+..+|.|+|.+|.|||||+..+.+.. .... .++.+ ..+..+..+ .+.+...+.+... ..+...+...
T Consensus 102 ~~~~~v~l~G~pGsGKTTLl~~l~~~l-~~~~-~~~VI-~gD~~t~~D--a~rI~~~g~pvvqi~tG~~Chl~a~mv~~A 176 (290)
T PRK10463 102 RKQLVLNLVSSPGSGKTTLLTETLMRL-KDSV-PCAVI-EGDQQTVND--AARIRATGTPAIQVNTGKGCHLDAQMIADA 176 (290)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHh-ccCC-CEEEE-CCCcCcHHH--HHHHHhcCCcEEEecCCCCCcCcHHHHHHH
Confidence 456899999999999999999988753 2222 22222 222222222 1223333322110 1123334445
Q ss_pred HHHHhcCCeEEEEEeCCCc
Q 000594 252 LKEAVFKKKFLIVLDDVWS 270 (1402)
Q Consensus 252 l~~~l~~k~~LlVlDdv~~ 270 (1402)
+...-....-++|++++..
T Consensus 177 l~~L~~~~~d~liIEnvGn 195 (290)
T PRK10463 177 APRLPLDDNGILFIENVGN 195 (290)
T ss_pred HHHHhhcCCcEEEEECCCC
Confidence 5554444456788999843
No 452
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=92.25 E-value=0.067 Score=30.64 Aligned_cols=14 Identities=43% Similarity=0.648 Sum_probs=4.6
Q ss_pred ccceeccCcccccc
Q 000594 595 LRYLNFSNSWIQCL 608 (1402)
Q Consensus 595 Lr~L~Ls~~~i~~l 608 (1402)
|+.|+|++|.++++
T Consensus 3 L~~L~l~~n~L~~l 16 (17)
T PF13504_consen 3 LRTLDLSNNRLTSL 16 (17)
T ss_dssp -SEEEETSS--SSE
T ss_pred cCEEECCCCCCCCC
Confidence 44444444444433
No 453
>cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters. Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane.
Probab=92.24 E-value=0.99 Score=48.64 Aligned_cols=22 Identities=27% Similarity=0.451 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+.-
T Consensus 31 ~~~~i~G~nGsGKSTLl~~i~G 52 (220)
T cd03245 31 EKVAIIGRVGSGKSTLLKLLAG 52 (220)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 5899999999999999999875
No 454
>PRK13543 cytochrome c biogenesis protein CcmA; Provisional
Probab=92.24 E-value=1 Score=48.19 Aligned_cols=23 Identities=30% Similarity=0.354 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||++.+.-.
T Consensus 38 e~~~i~G~nGsGKSTLl~~i~G~ 60 (214)
T PRK13543 38 EALLVQGDNGAGKTTLLRVLAGL 60 (214)
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 48999999999999999999753
No 455
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=92.21 E-value=0.12 Score=52.47 Aligned_cols=22 Identities=41% Similarity=0.603 Sum_probs=18.6
Q ss_pred EEEEccCCChHHHHHHHHHccc
Q 000594 184 IPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
|.|.|.+|+|||||++.+++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHh
Confidence 6799999999999999998653
No 456
>cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2.
Probab=92.20 E-value=0.86 Score=49.20 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|.|..|.|||||++.+..-
T Consensus 49 e~~~i~G~nGsGKSTLl~~l~G~ 71 (224)
T cd03220 49 ERIGLIGRNGAGKSTLLRLLAGI 71 (224)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 48999999999999999999763
No 457
>COG0541 Ffh Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=92.20 E-value=2.4 Score=48.61 Aligned_cols=75 Identities=17% Similarity=0.183 Sum_probs=45.2
Q ss_pred HHHHHHHHHhcCCCC---CCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCC--CCHHHHHHHHHHHhc
Q 000594 162 DKARILDMVLENDPS---DAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHD--FDVLRISKAILESIT 236 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~---~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~--~~~~~~~~~i~~~~~ 236 (1402)
-.+++++.|...... ....+.||-.+|.-|.||||-|-++++...+ ....+-+...+. +...+-++.+.++++
T Consensus 78 V~eELv~llG~~~~~~~l~~~~P~vImmvGLQGsGKTTt~~KLA~~lkk--~~~kvllVaaD~~RpAA~eQL~~La~q~~ 155 (451)
T COG0541 78 VYEELVKLLGGENSELNLAKKPPTVILMVGLQGSGKTTTAGKLAKYLKK--KGKKVLLVAADTYRPAAIEQLKQLAEQVG 155 (451)
T ss_pred HHHHHHHHhCCCCcccccCCCCCeEEEEEeccCCChHhHHHHHHHHHHH--cCCceEEEecccCChHHHHHHHHHHHHcC
Confidence 345667777631111 1145789999999999999999988875433 333333333333 334455666777766
Q ss_pred CC
Q 000594 237 LS 238 (1402)
Q Consensus 237 ~~ 238 (1402)
.+
T Consensus 156 v~ 157 (451)
T COG0541 156 VP 157 (451)
T ss_pred Cc
Confidence 53
No 458
>COG2019 AdkA Archaeal adenylate kinase [Nucleotide transport and metabolism]
Probab=92.20 E-value=0.12 Score=50.24 Aligned_cols=24 Identities=29% Similarity=0.571 Sum_probs=20.9
Q ss_pred cEEEEEEccCCChHHHHHHHHHcc
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++.|+|.+|+||||+.+.+-..
T Consensus 4 ~kvvvitGVpGvGKTTVl~~~~~~ 27 (189)
T COG2019 4 RKVVVITGVPGVGKTTVLKIALKE 27 (189)
T ss_pred ceEEEEEcCCCCChHHHHHHHHHH
Confidence 579999999999999999887653
No 459
>cd01132 F1_ATPase_alpha F1 ATP synthase alpha, central domain. The F-ATPase is found in bacterial plasma membranes, mitochondrial inner membranes and in chloroplast thylakoid membranes. It has also been found in the archaea Methanosarcina barkeri. It uses a proton gradient to drive ATP synthesis and hydrolyzes ATP to build the proton gradient. The extrinisic membrane domain, F1, is composed of alpha, beta, gamma, delta and epsilon subunits with a stoichiometry of 3:3:1:1:1. The alpha subunit of the F1 ATP synthase can bind nucleotides, but is non-catalytic.
Probab=92.16 E-value=0.33 Score=52.76 Aligned_cols=82 Identities=18% Similarity=0.214 Sum_probs=46.9
Q ss_pred EEEEEEccCCChHHHHH-HHHHccccccccCce-eEEEeCCC-CCHHHHHHHHHHHhcCCC-------CCcCchH-----
Q 000594 182 RVIPLVGMGGIGKTTLA-QEVYNDKLTEAFEPK-AWVCVSHD-FDVLRISKAILESITLSP-------CDLKDLN----- 246 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa-~~v~~~~~~~~f~~~-~wv~~~~~-~~~~~~~~~i~~~~~~~~-------~~~~~~~----- 246 (1402)
+-++|.|..|+|||+|| ..+.+. ..-+.+ +++-+.+. ..+.++.+++.+.-.... .+.....
T Consensus 70 Qr~~Ifg~~g~GKt~L~l~~i~~~---~~~~v~~V~~~iGer~~ev~e~~~~~~~~~~~~~tvvv~~t~d~~~~~r~~a~ 146 (274)
T cd01132 70 QRELIIGDRQTGKTAIAIDTIINQ---KGKKVYCIYVAIGQKASTVAQVVKTLEEHGAMEYTIVVAATASDPAPLQYLAP 146 (274)
T ss_pred CEEEeeCCCCCCccHHHHHHHHHh---cCCCeEEEEEecccchHHHHHHHHHHHhcCccceeEEEEeCCCCchhHHHHHH
Confidence 46899999999999996 555543 123444 45555544 345666666654321111 0111111
Q ss_pred ----HHHHHHHHHhcCCeEEEEEeCC
Q 000594 247 ----SVQLKLKEAVFKKKFLIVLDDV 268 (1402)
Q Consensus 247 ----~~~~~l~~~l~~k~~LlVlDdv 268 (1402)
..++.++. +++.+|+|+||+
T Consensus 147 ~~a~aiAE~fr~--~G~~Vlvl~Dsl 170 (274)
T cd01132 147 YTGCAMGEYFMD--NGKHALIIYDDL 170 (274)
T ss_pred HHHHHHHHHHHH--CCCCEEEEEcCh
Confidence 12233333 489999999999
No 460
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=92.15 E-value=0.2 Score=47.61 Aligned_cols=69 Identities=20% Similarity=0.265 Sum_probs=38.6
Q ss_pred EEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhcCCe
Q 000594 183 VIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLKEAVFKKK 260 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~ 260 (1402)
-|.|.|.+|+||||+|.+++... ..-|+++++-..-..+....-++. .+..-+.+.+.+.|...+.+..
T Consensus 9 NILvtGTPG~GKstl~~~lae~~------~~~~i~isd~vkEn~l~~gyDE~y---~c~i~DEdkv~D~Le~~m~~Gg 77 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKT------GLEYIEISDLVKENNLYEGYDEEY---KCHILDEDKVLDELEPLMIEGG 77 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHh------CCceEehhhHHhhhcchhcccccc---cCccccHHHHHHHHHHHHhcCC
Confidence 47899999999999999988531 123677665333222222221111 1123345556666666555433
No 461
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=92.13 E-value=0.11 Score=51.12 Aligned_cols=20 Identities=35% Similarity=0.647 Sum_probs=18.6
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 000594 183 VIPLVGMGGIGKTTLAQEVY 202 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~ 202 (1402)
.|+|.|.+|+||||+|+.+.
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~ 21 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR 21 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH
Confidence 58999999999999999977
No 462
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=92.12 E-value=2.9 Score=47.41 Aligned_cols=49 Identities=18% Similarity=0.148 Sum_probs=33.0
Q ss_pred eecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChHHH
Q 000594 312 ELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAA 361 (1402)
Q Consensus 312 ~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PLai 361 (1402)
.+++++++.+|+..++.-++-.+--.. ...-+...+++.-..+|+|--+
T Consensus 258 ~i~v~~~s~~E~~~ll~yy~~~~~l~~-~~~~~~~~e~~~~~s~GNp~el 306 (309)
T PF10236_consen 258 PIEVPRLSKEEARSLLEYYADSGWLRS-RVDEELVLEKLFLSSNGNPREL 306 (309)
T ss_pred eEEeCCCCHHHHHHHHHHHHHCCcccc-CCCCHHHHHHHHHhcCCCHHHh
Confidence 577999999999999987773322111 1233556667777779999543
No 463
>TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility.
Probab=92.12 E-value=1.1 Score=51.00 Aligned_cols=23 Identities=26% Similarity=0.478 Sum_probs=20.8
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|+.|.|||||.+.+...
T Consensus 29 ei~~l~G~NGaGKTTLl~~l~Gl 51 (301)
T TIGR03522 29 RIVGFLGPNGAGKSTTMKIITGY 51 (301)
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 464
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=92.11 E-value=0.12 Score=54.67 Aligned_cols=22 Identities=23% Similarity=0.256 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.||||+.+.+..
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~~ 51 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIGL 51 (202)
T ss_pred eEEEEECCCCCccHHHHHHHHH
Confidence 5899999999999999999984
No 465
>PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional
Probab=92.11 E-value=1.3 Score=48.85 Aligned_cols=22 Identities=32% Similarity=0.551 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+..
T Consensus 39 e~~~I~G~NGsGKSTLlk~l~G 60 (257)
T PRK11247 39 QFVAVVGRSGCGKSTLLRLLAG 60 (257)
T ss_pred CEEEEECCCCCCHHHHHHHHhc
Confidence 4899999999999999999975
No 466
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=92.09 E-value=0.094 Score=54.01 Aligned_cols=22 Identities=32% Similarity=0.434 Sum_probs=20.0
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|+|.|.+|.||||+|+.+...
T Consensus 1 ii~i~G~sgsGKTtla~~l~~~ 22 (187)
T cd02024 1 IVGISGVTNSGKTTLAKLLQRI 22 (187)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998874
No 467
>cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function. Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w
Probab=92.09 E-value=0.51 Score=49.62 Aligned_cols=20 Identities=25% Similarity=0.552 Sum_probs=18.9
Q ss_pred EEEEEccCCChHHHHHHHHH
Q 000594 183 VIPLVGMGGIGKTTLAQEVY 202 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~ 202 (1402)
+++|+|..|.|||||+++++
T Consensus 24 ~~~i~G~nGsGKStll~al~ 43 (197)
T cd03278 24 LTAIVGPNGSGKSNIIDAIR 43 (197)
T ss_pred cEEEECCCCCCHHHHHHHHH
Confidence 88999999999999999986
No 468
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=92.06 E-value=0.21 Score=54.92 Aligned_cols=21 Identities=38% Similarity=0.727 Sum_probs=19.2
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.++|++|+||||+|+++...
T Consensus 2 Ivl~G~pGSGKST~a~~La~~ 22 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKK 22 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHH
Confidence 789999999999999998865
No 469
>cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=92.04 E-value=1.2 Score=47.10 Aligned_cols=22 Identities=27% Similarity=0.456 Sum_probs=20.3
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+.-
T Consensus 34 e~~~i~G~nGsGKSTLl~~l~G 55 (202)
T cd03233 34 EMVLVLGRPGSGCSTLLKALAN 55 (202)
T ss_pred cEEEEECCCCCCHHHHHHHhcc
Confidence 5999999999999999999875
No 470
>cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE.
Probab=92.04 E-value=0.93 Score=47.99 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||.+.+..-
T Consensus 27 e~~~i~G~nGsGKSTLl~~l~G~ 49 (201)
T cd03231 27 EALQVTGPNGSGKTTLLRILAGL 49 (201)
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999998753
No 471
>PF03308 ArgK: ArgK protein; InterPro: IPR005129 Bacterial periplasmic transport systems require the function of a specific substrate-binding protein, located in the periplasm, and several cytoplasmic membrane transport components. In Escherichia coli, the arginine-ornithine transport system requires an arginine-ornithine-binding protein and the lysine-arginine-ornithine (LAO) transport system includes a LAO-binding protein. Both periplasmic proteins can be phosphorylated by a single kinase, ArgK [] resulting in reduced levels of transport activity of the periplasmic transport systems that include each of the binding proteins. The ArgK protein acts as an ATPase enzyme and as a kinase.; PDB: 3MD0_A 3P32_A 2QM7_A 2QM8_A 2WWW_D 2P67_A 3NXS_A.
Probab=92.03 E-value=0.17 Score=53.66 Aligned_cols=64 Identities=19% Similarity=0.165 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcccccccc-CceeEEEeCCCCCHHHHHH
Q 000594 162 DKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF-EPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 162 ~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f-~~~~wv~~~~~~~~~~~~~ 229 (1402)
+..++++.+.... ++..+|+|.|+||+||+||..++.....+... -.++=|+=|..++--.++.
T Consensus 14 ~~~~ll~~l~~~~----g~a~~iGiTG~PGaGKSTli~~l~~~~~~~g~~VaVlAVDPSSp~tGGAlLG 78 (266)
T PF03308_consen 14 EARELLKRLYPHT----GRAHVIGITGPPGAGKSTLIDALIRELRERGKRVAVLAVDPSSPFTGGALLG 78 (266)
T ss_dssp HHHHHHHHHGGGT----T-SEEEEEEE-TTSSHHHHHHHHHHHHHHTT--EEEEEE-GGGGCC---SS-
T ss_pred HHHHHHHHHHhhc----CCceEEEeeCCCCCcHHHHHHHHHHHHhhcCCceEEEEECCCCCCCCCcccc
Confidence 4556677766543 45579999999999999999998875433222 2233444455565544443
No 472
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=92.01 E-value=0.79 Score=50.34 Aligned_cols=88 Identities=16% Similarity=0.198 Sum_probs=46.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCC-CHHHHHHHHHHHhcCCCCCcCchHHHHHHHHHHhc-CC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDF-DVLRISKAILESITLSPCDLKDLNSVQLKLKEAVF-KK 259 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~~~l~-~k 259 (1402)
.+++++|.+|+||||+++.+........ ..+.+++..... ....-++...+.++.+.....+...+...+...-+ .+
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~-~~v~~i~~D~~ri~~~~ql~~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~ 154 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKK-KTVGFITTDHSRIGTVQQLQDYVKTIGFEVIAVRDEAAMTRALTYFKEEAR 154 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcC-CeEEEEecCCCCHHHHHHHHHHhhhcCceEEecCCHHHHHHHHHHHHhcCC
Confidence 5899999999999999998875432111 234455543221 12222333333343322222344444444433212 34
Q ss_pred eEEEEEeCCCc
Q 000594 260 KFLIVLDDVWS 270 (1402)
Q Consensus 260 ~~LlVlDdv~~ 270 (1402)
.=++++|..-.
T Consensus 155 ~D~ViIDt~Gr 165 (270)
T PRK06731 155 VDYILIDTAGK 165 (270)
T ss_pred CCEEEEECCCC
Confidence 56888898744
No 473
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=92.01 E-value=0.25 Score=61.37 Aligned_cols=75 Identities=19% Similarity=0.139 Sum_probs=49.8
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHH
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILE 233 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~ 233 (1402)
.+++|.++.++.+...+... +.+.++|++|+||||+|+.+.+..-...|...+++.-+ ..+...+++.++.
T Consensus 18 ~~viG~~~a~~~l~~a~~~~--------~~~ll~G~pG~GKT~la~~la~~l~~~~~~~~~~~~n~-~~~~~~~~~~v~~ 88 (608)
T TIGR00764 18 DQVIGQEEAVEIIKKAAKQK--------RNVLLIGEPGVGKSMLAKAMAELLPDEELEDILVYPNP-EDPNMPRIVEVPA 88 (608)
T ss_pred hhccCHHHHHHHHHHHHHcC--------CCEEEECCCCCCHHHHHHHHHHHcCchhheeEEEEeCC-CCCchHHHHHHHH
Confidence 56889998888777777532 24569999999999999999875433344444433322 2244455777776
Q ss_pred HhcC
Q 000594 234 SITL 237 (1402)
Q Consensus 234 ~~~~ 237 (1402)
+++.
T Consensus 89 ~~g~ 92 (608)
T TIGR00764 89 GEGR 92 (608)
T ss_pred hhch
Confidence 6654
No 474
>PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional
Probab=91.97 E-value=0.77 Score=51.33 Aligned_cols=22 Identities=32% Similarity=0.459 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.+..
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~G 53 (274)
T PRK13647 32 SKTALLGPNGAGKSTLLLHLNG 53 (274)
T ss_pred CEEEEECCCCCcHHHHHHHHhc
Confidence 5999999999999999999975
No 475
>PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed
Probab=91.97 E-value=0.87 Score=50.07 Aligned_cols=23 Identities=35% Similarity=0.612 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||++.++.-
T Consensus 31 e~~~I~G~NGsGKSTLl~~i~Gl 53 (251)
T PRK09544 31 KILTLLGPNGAGKSTLVRVVLGL 53 (251)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999853
No 476
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=91.94 E-value=0.78 Score=50.34 Aligned_cols=52 Identities=15% Similarity=0.209 Sum_probs=36.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILES 234 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~ 234 (1402)
-.++.|.|.+|+|||++|.++..+....+=..++|++... +..++...++..
T Consensus 13 G~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~E~--~~~~~~~r~~~~ 64 (242)
T cd00984 13 GDLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSLEM--SKEQLLQRLLAS 64 (242)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeCCC--CHHHHHHHHHHH
Confidence 3689999999999999999987654333223566766554 455666666543
No 477
>cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component. Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet.
Probab=91.92 E-value=0.56 Score=49.61 Aligned_cols=118 Identities=15% Similarity=0.147 Sum_probs=59.2
Q ss_pred EEEEEEccCCChHHHHHHHHHccc----ccc--ccCc--------------eeEEEeCCCCCH--HHHHHHHHHHhcCCC
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDK----LTE--AFEP--------------KAWVCVSHDFDV--LRISKAILESITLSP 239 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~----~~~--~f~~--------------~~wv~~~~~~~~--~~~~~~i~~~~~~~~ 239 (1402)
.+++|+|..|.|||||++.+.... ..+ .|+. .+++ +.+.+.. .....+++... .
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~~~~~~~i~~-v~q~~~~~~~~~~~~~l~~~---~ 102 (200)
T cd03217 27 EVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPEERARLGIFL-AFQYPPEIPGVKNADFLRYV---N 102 (200)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHHHHhhCcEEE-eecChhhccCccHHHHHhhc---c
Confidence 599999999999999999987641 111 0110 0111 1121110 00111111111 0
Q ss_pred CCcCchHHHHHHHHHHhcCCeEEEEEeCCCcC-ChhhHHHhhcccCCC-CCCcEEEEEccchhhhh
Q 000594 240 CDLKDLNSVQLKLKEAVFKKKFLIVLDDVWSE-RYDLWQALKSPFMAG-APGSRIIVTTRSMDVAS 303 (1402)
Q Consensus 240 ~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~~-~~~~~~~~~~~l~~~-~~gs~iivTtR~~~v~~ 303 (1402)
.....-+...-.+.+.+..++=++++|+.-.. +....+.+...+... ..|..||++|.+.+.+.
T Consensus 103 ~~LS~G~~qrv~laral~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~ 168 (200)
T cd03217 103 EGFSGGEKKRNEILQLLLLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLD 168 (200)
T ss_pred ccCCHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHH
Confidence 11222223334466667778889999997432 222233333333221 23667888888777655
No 478
>cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters. PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.92 E-value=0.57 Score=49.14 Aligned_cols=22 Identities=36% Similarity=0.521 Sum_probs=20.5
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|+|..|.|||||++.++-
T Consensus 34 e~~~l~G~nGsGKSTLl~~l~G 55 (192)
T cd03232 34 TLTALMGESGAGKTTLLDVLAG 55 (192)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5999999999999999999985
No 479
>TIGR03498 FliI_clade3 flagellar protein export ATPase FliI. Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively.
Probab=91.90 E-value=0.5 Score=55.21 Aligned_cols=85 Identities=18% Similarity=0.150 Sum_probs=47.1
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-------CcCchHH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-------DLKDLNS-----VQ 249 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-------~~~~~~~-----~~ 249 (1402)
..++|+|..|+|||||++.+.... .. ...++...-.+.-.+.++.++.+..-+.... +...... ..
T Consensus 141 q~i~I~G~sG~GKTtLl~~I~~~~-~~-~~gvi~~iGer~~ev~~~~~~~l~~~~~~~tvvv~atsd~~~~~r~~a~~~a 218 (418)
T TIGR03498 141 QRLGIFAGSGVGKSTLLSMLARNT-DA-DVVVIALVGERGREVREFLEDDLGEEGLKRSVVVVATSDESPLMRRQAAYTA 218 (418)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC-CC-CEEEEEEEeeechHHHHHHHHhhhccccceeEEEEECCCCCHHHHHHHHHHH
Confidence 579999999999999999888642 11 1122222223344455555554443222111 1111111 12
Q ss_pred HHHHHHh--cCCeEEEEEeCC
Q 000594 250 LKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 250 ~~l~~~l--~~k~~LlVlDdv 268 (1402)
..+.+++ +++.+|+++||+
T Consensus 219 ~~iAEyfrd~G~~Vll~~Dsl 239 (418)
T TIGR03498 219 TAIAEYFRDQGKDVLLLMDSV 239 (418)
T ss_pred HHHHHHHHHcCCCEEEeccch
Confidence 2244444 489999999998
No 480
>cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus.
Probab=91.88 E-value=0.89 Score=47.77 Aligned_cols=22 Identities=27% Similarity=0.516 Sum_probs=20.4
Q ss_pred EEEEEEccCCChHHHHHHHHHc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYN 203 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~ 203 (1402)
.+++|.|..|.|||||.+.+..
T Consensus 36 e~~~l~G~nGsGKStLl~~i~G 57 (194)
T cd03213 36 ELTAIMGPSGAGKSTLLNALAG 57 (194)
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 5899999999999999999875
No 481
>cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein. This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway.
Probab=91.87 E-value=0.74 Score=51.86 Aligned_cols=84 Identities=18% Similarity=0.200 Sum_probs=47.9
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeC-CCCCHHHHHHHHHHHhcCCC-------CCcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVS-HDFDVLRISKAILESITLSP-------CDLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~-~~~~~~~~~~~i~~~~~~~~-------~~~~~~~-----~~ 248 (1402)
..++|+|..|.|||||++.+.... . -+..+...+. +..++.++.......-.... .+..... ..
T Consensus 70 qri~I~G~sG~GKTtLl~~Ia~~~-~--~~~~vi~~iGer~~ev~~~~~~~~~~~~l~rtvvv~~t~d~~~~~r~~~~~~ 146 (326)
T cd01136 70 QRLGIFAGSGVGKSTLLGMIARGT-T--ADVNVIALIGERGREVREFIEKDLGEEGLKRSVVVVATSDESPLLRVKAAYT 146 (326)
T ss_pred cEEEEECCCCCChHHHHHHHhCCC-C--CCEEEEEEEecCCccHHHHHHHHHhcCccceEEEEEcCCCCCHHHHHHHHHH
Confidence 478999999999999999988642 1 2233333333 34455555555554422211 1111111 11
Q ss_pred HHHHHHHh--cCCeEEEEEeCC
Q 000594 249 QLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l--~~k~~LlVlDdv 268 (1402)
...+.+++ ++|.+|+++||+
T Consensus 147 a~~~AEyfr~~g~~Vll~~Dsl 168 (326)
T cd01136 147 ATAIAEYFRDQGKDVLLLMDSL 168 (326)
T ss_pred HHHHHHHHHHcCCCeEEEeccc
Confidence 12233333 489999999998
No 482
>cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=91.82 E-value=1.2 Score=48.39 Aligned_cols=23 Identities=35% Similarity=0.468 Sum_probs=20.7
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||.+.+...
T Consensus 30 ~~~~i~G~nGsGKSTLl~~l~G~ 52 (229)
T cd03254 30 ETVAIVGPTGAGKTTLINLLMRF 52 (229)
T ss_pred CEEEEECCCCCCHHHHHHHHhcC
Confidence 48999999999999999999753
No 483
>PRK05922 type III secretion system ATPase; Validated
Probab=91.82 E-value=0.52 Score=55.10 Aligned_cols=84 Identities=12% Similarity=0.156 Sum_probs=47.7
Q ss_pred EEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC-CCCHHHHHHHHHHHhcCCCC-------CcCchH-----HH
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH-DFDVLRISKAILESITLSPC-------DLKDLN-----SV 248 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~-~~~~~~~~~~i~~~~~~~~~-------~~~~~~-----~~ 248 (1402)
..++|+|..|+|||||++.+.... ..+....+.+.. .....+.+.+.......... +..... ..
T Consensus 158 qrigI~G~nG~GKSTLL~~Ia~~~---~~d~gvi~liGerg~ev~eyl~q~~~~~~~~rTVlv~atsd~~~~~r~~a~~~ 234 (434)
T PRK05922 158 QRIGVFSEPGSGKSSLLSTIAKGS---KSTINVIALIGERGREVREYIEQHKEGLAAQRTIIIASPAHETAPTKVIAGRA 234 (434)
T ss_pred cEEEEECCCCCChHHHHHHHhccC---CCCceEEEEeCCCCchHHHHHHHHHhhccccceEEEEECCCCCHHHHHHHHHH
Confidence 468999999999999999988642 223333333333 33444555554433322111 111111 11
Q ss_pred HHHHHHHh--cCCeEEEEEeCC
Q 000594 249 QLKLKEAV--FKKKFLIVLDDV 268 (1402)
Q Consensus 249 ~~~l~~~l--~~k~~LlVlDdv 268 (1402)
...+.+++ +++++|+++||+
T Consensus 235 a~tiAEyfrd~G~~VLl~~Dsl 256 (434)
T PRK05922 235 AMTIAEYFRDQGHRVLFIMDSL 256 (434)
T ss_pred HHHHHHHHHHcCCCEEEeccch
Confidence 22334444 489999999999
No 484
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=91.81 E-value=0.79 Score=56.73 Aligned_cols=116 Identities=14% Similarity=0.167 Sum_probs=60.0
Q ss_pred EEEEEEccCCChHHHHHHHHHccccc--cccCceeEEEeCCCCCHHHHHHHHHHHhcC---CCCCcCchHHHHHHHHHHh
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYNDKLT--EAFEPKAWVCVSHDFDVLRISKAILESITL---SPCDLKDLNSVQLKLKEAV 256 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~~~~--~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~---~~~~~~~~~~~~~~l~~~l 256 (1402)
++..|.|.+|.||||++..+.....+ ..-...+.+......-..++...+...+.. ..............+.+.|
T Consensus 168 ~~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~~~~~~~~~~~~~~~~a~TiHrlL 247 (615)
T PRK10875 168 RISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTDEQKKRIPEEASTLHRLL 247 (615)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhhccccchhhhhcCCCchHHHHHHh
Confidence 48899999999999999998764322 111234555544443344444444332211 1000000000111222222
Q ss_pred c------------CCe---EEEEEeCCCcCChhhHHHhhcccCCCCCCcEEEEEccchh
Q 000594 257 F------------KKK---FLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD 300 (1402)
Q Consensus 257 ~------------~k~---~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 300 (1402)
. +.+ -++|+|.+.-.+......+..+++ +++|+|+---..+
T Consensus 248 g~~~~~~~~~~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~---~~~rlIlvGD~~Q 303 (615)
T PRK10875 248 GAQPGSQRLRYHAGNPLHLDVLVVDEASMVDLPMMARLIDALP---PHARVIFLGDRDQ 303 (615)
T ss_pred CcCCCccchhhccccCCCCCeEEEChHhcccHHHHHHHHHhcc---cCCEEEEecchhh
Confidence 1 111 289999986555555666666665 5688887654433
No 485
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=91.78 E-value=0.1 Score=55.14 Aligned_cols=22 Identities=41% Similarity=0.685 Sum_probs=19.7
Q ss_pred EEEEEccCCChHHHHHHHHHcc
Q 000594 183 VIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 183 vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+|+|.|.+|+||||+|+.+..-
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~ 22 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQ 22 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999999998763
No 486
>cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence.
Probab=91.77 E-value=0.62 Score=49.31 Aligned_cols=54 Identities=15% Similarity=0.136 Sum_probs=32.2
Q ss_pred HHHHHhcCCeEEEEEeCCCcC-ChhhHH-HhhcccCCCC-C-CcEEEEEccchhhhhh
Q 000594 251 KLKEAVFKKKFLIVLDDVWSE-RYDLWQ-ALKSPFMAGA-P-GSRIIVTTRSMDVAST 304 (1402)
Q Consensus 251 ~l~~~l~~k~~LlVlDdv~~~-~~~~~~-~~~~~l~~~~-~-gs~iivTtR~~~v~~~ 304 (1402)
.+.+.+..++-++++|+.-.. +....+ .+...+.... . |..||++|.+.+....
T Consensus 131 ala~al~~~p~illlDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~~~ 188 (204)
T cd03240 131 ALAETFGSNCGILALDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELVDA 188 (204)
T ss_pred HHHHHhccCCCEEEEcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHHhh
Confidence 355666788899999998432 222233 3433333222 2 5668888888776543
No 487
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=91.75 E-value=0.13 Score=53.49 Aligned_cols=23 Identities=39% Similarity=0.494 Sum_probs=20.6
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
++++|+|+.|+||||+|+.+...
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~ 24 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARAR 24 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999999998764
No 488
>PRK00131 aroK shikimate kinase; Reviewed
Probab=91.73 E-value=0.13 Score=53.23 Aligned_cols=23 Identities=30% Similarity=0.473 Sum_probs=21.1
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
..|.|+|++|+||||+|+.++..
T Consensus 5 ~~i~l~G~~GsGKstla~~La~~ 27 (175)
T PRK00131 5 PNIVLIGFMGAGKSTIGRLLAKR 27 (175)
T ss_pred CeEEEEcCCCCCHHHHHHHHHHH
Confidence 58999999999999999999875
No 489
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=91.70 E-value=0.49 Score=59.31 Aligned_cols=84 Identities=19% Similarity=0.132 Sum_probs=55.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~ 253 (1402)
+.-+++-|.|.+|+||||||.+++.... ..=..++|+...+.++.. .+++++.... .....+.....+.
T Consensus 58 p~GsiteI~G~~GsGKTtLal~~~~~a~-~~G~~v~yId~E~t~~~~-----~A~~lGvDl~~llv~~~~~~E~~l~~i~ 131 (790)
T PRK09519 58 PRGRVIEIYGPESSGKTTVALHAVANAQ-AAGGVAAFIDAEHALDPD-----YAKKLGVDTDSLLVSQPDTGEQALEIAD 131 (790)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHHHHHH-HcCCcEEEECCccchhHH-----HHHHcCCChhHeEEecCCCHHHHHHHHH
Confidence 4457999999999999999988765422 223557899988877743 5666665432 1223344444455
Q ss_pred HHhc-CCeEEEEEeCC
Q 000594 254 EAVF-KKKFLIVLDDV 268 (1402)
Q Consensus 254 ~~l~-~k~~LlVlDdv 268 (1402)
..++ ++.-|||+|-+
T Consensus 132 ~lv~~~~~~LVVIDSI 147 (790)
T PRK09519 132 MLIRSGALDIVVIDSV 147 (790)
T ss_pred HHhhcCCCeEEEEcch
Confidence 5444 45678999998
No 490
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=91.66 E-value=0.16 Score=51.29 Aligned_cols=26 Identities=23% Similarity=0.382 Sum_probs=22.6
Q ss_pred CcEEEEEEccCCChHHHHHHHHHccc
Q 000594 180 NFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 180 ~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
...+++|+|..|.|||||++.+....
T Consensus 5 ~~~ii~ivG~sgsGKTTLi~~li~~l 30 (173)
T PRK10751 5 MIPLLAIAAWSGTGKTTLLKKLIPAL 30 (173)
T ss_pred CceEEEEECCCCChHHHHHHHHHHHH
Confidence 45699999999999999999998653
No 491
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=91.65 E-value=1.1 Score=54.35 Aligned_cols=177 Identities=17% Similarity=0.153 Sum_probs=90.3
Q ss_pred cccchHHHHHHHHHHhcCCCCC---CCCcEEEEEEccCCChHHHHHHHHHcccccccc---CceeEEEeCCCCCHHHHHH
Q 000594 156 VYGRDEDKARILDMVLENDPSD---AANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAF---EPKAWVCVSHDFDVLRISK 229 (1402)
Q Consensus 156 ~vGr~~~~~~l~~~L~~~~~~~---~~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f---~~~~wv~~~~~~~~~~~~~ 229 (1402)
..+++.-+..+++.+....... ..--.++.++|.+|.||||+++.|+... ..|+ ||.-.++-+...+
T Consensus 403 ~~~~~~~~~~l~~vl~p~~~~s~~~~~~~~~vLLhG~~g~GK~t~V~~vas~l-g~h~~evdc~el~~~s~~~~------ 475 (953)
T KOG0736|consen 403 PPGLEAKVLELVAVLSPQKQPSGALLTLNPSVLLHGPPGSGKTTVVRAVASEL-GLHLLEVDCYELVAESASHT------ 475 (953)
T ss_pred CccchHHHHHHHHHhCcccCcchhccccceEEEEeCCCCCChHHHHHHHHHHh-CCceEeccHHHHhhcccchh------
Confidence 4567777777777775432111 0123588899999999999999999753 3222 2222222111111
Q ss_pred HHHHHhcCCCCCcCchHHHHHHHHHHhcCCeEEEEEeCCCc--------CChhhHHHhhc-----ccCCCCCCcEEEEEc
Q 000594 230 AILESITLSPCDLKDLNSVQLKLKEAVFKKKFLIVLDDVWS--------ERYDLWQALKS-----PFMAGAPGSRIIVTT 296 (1402)
Q Consensus 230 ~i~~~~~~~~~~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~--------~~~~~~~~~~~-----~l~~~~~gs~iivTt 296 (1402)
...++....+.-+-.+..|.+-|+.- ++......+.. .+....++.-++.||
T Consensus 476 ---------------etkl~~~f~~a~~~~pavifl~~~dvl~id~dgged~rl~~~i~~~ls~e~~~~~~~~~ivv~t~ 540 (953)
T KOG0736|consen 476 ---------------ETKLQAIFSRARRCSPAVLFLRNLDVLGIDQDGGEDARLLKVIRHLLSNEDFKFSCPPVIVVATT 540 (953)
T ss_pred ---------------HHHHHHHHHHHhhcCceEEEEeccceeeecCCCchhHHHHHHHHHHHhcccccCCCCceEEEEec
Confidence 11112222222223444444444311 01001111111 112223444455554
Q ss_pred c-chhhhhhcCCCcceeecccCCChhhHHHHHHHhhcCCCCCCCCchHHHHHHHHHHHcCCChH
Q 000594 297 R-SMDVASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPL 359 (1402)
Q Consensus 297 R-~~~v~~~~~~~~~~~~~l~~L~~~~~~~lf~~~a~~~~~~~~~~~~~~~~~~i~~~~~g~PL 359 (1402)
- .+.+...+.....++++++.+++++-.++|+.+.-... -+-..--+.++++|.|.-+
T Consensus 541 ~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~-----~n~~v~~k~~a~~t~gfs~ 599 (953)
T KOG0736|consen 541 SSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLP-----LNQDVNLKQLARKTSGFSF 599 (953)
T ss_pred cccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhccc-----cchHHHHHHHHHhcCCCCH
Confidence 3 35555555555567888999999999999988762211 1112334567777777543
No 492
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=91.64 E-value=0.74 Score=58.61 Aligned_cols=47 Identities=23% Similarity=0.313 Sum_probs=36.1
Q ss_pred CccccchHHHHHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHcc
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 154 ~~~vGr~~~~~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
+.++|....+.++.+........ . .-|.|+|..|+||+++|+.+++.
T Consensus 325 ~~l~g~s~~~~~~~~~~~~~a~~---~-~pvli~Ge~GtGK~~~A~~ih~~ 371 (638)
T PRK11388 325 DHMPQDSPQMRRLIHFGRQAAKS---S-FPVLLCGEEGVGKALLAQAIHNE 371 (638)
T ss_pred cceEECCHHHHHHHHHHHHHhCc---C-CCEEEECCCCcCHHHHHHHHHHh
Confidence 45789998888888777653321 1 23779999999999999999864
No 493
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=91.64 E-value=0.63 Score=49.03 Aligned_cols=21 Identities=38% Similarity=0.476 Sum_probs=19.1
Q ss_pred EEEEccCCChHHHHHHHHHcc
Q 000594 184 IPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 184 i~I~G~gGiGKTtLa~~v~~~ 204 (1402)
|.|.|++|+||||+|+.+...
T Consensus 2 I~i~G~pGsGKst~a~~La~~ 22 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKK 22 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 689999999999999998864
No 494
>PRK11823 DNA repair protein RadA; Provisional
Probab=91.63 E-value=0.72 Score=55.14 Aligned_cols=81 Identities=25% Similarity=0.259 Sum_probs=46.2
Q ss_pred cEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCC-----CcCchHHHHHHHHHH
Q 000594 181 FRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSHDFDVLRISKAILESITLSPC-----DLKDLNSVQLKLKEA 255 (1402)
Q Consensus 181 ~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~-----~~~~~~~~~~~l~~~ 255 (1402)
-.++.|.|.+|+|||||+.+++....+ .-..++|++..+. ..++.. .++.++.... ...+.+++...+++
T Consensus 80 Gs~~lI~G~pG~GKTtL~lq~a~~~a~-~g~~vlYvs~Ees--~~qi~~-ra~rlg~~~~~l~~~~e~~l~~i~~~i~~- 154 (446)
T PRK11823 80 GSVVLIGGDPGIGKSTLLLQVAARLAA-AGGKVLYVSGEES--ASQIKL-RAERLGLPSDNLYLLAETNLEAILATIEE- 154 (446)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHh-cCCeEEEEEcccc--HHHHHH-HHHHcCCChhcEEEeCCCCHHHHHHHHHh-
Confidence 469999999999999999999875332 2235677776543 333322 2444443211 11233333333322
Q ss_pred hcCCeEEEEEeCC
Q 000594 256 VFKKKFLIVLDDV 268 (1402)
Q Consensus 256 l~~k~~LlVlDdv 268 (1402)
.+.-++|+|.+
T Consensus 155 --~~~~lVVIDSI 165 (446)
T PRK11823 155 --EKPDLVVIDSI 165 (446)
T ss_pred --hCCCEEEEech
Confidence 34557777776
No 495
>COG1703 ArgK Putative periplasmic protein kinase ArgK and related GTPases of G3E family [Amino acid transport and metabolism]
Probab=91.61 E-value=0.19 Score=54.02 Aligned_cols=64 Identities=22% Similarity=0.154 Sum_probs=42.6
Q ss_pred HHHHHHHhcCCCCCCCCcEEEEEEccCCChHHHHHHHHHccc-cccccCceeEEEeCCCCCHHHHHHHH
Q 000594 164 ARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEPKAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 164 ~~l~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~-~~~~f~~~~wv~~~~~~~~~~~~~~i 231 (1402)
.+++..+.... ++..+|+|.|.||+||+||.-++.... .+++--.++=|+-|..++--.++.+=
T Consensus 38 ~~ll~~l~p~t----G~a~viGITG~PGaGKSTli~~L~~~l~~~G~rVaVlAVDPSSp~TGGsiLGDR 102 (323)
T COG1703 38 RELLRALYPRT----GNAHVIGITGVPGAGKSTLIEALGRELRERGHRVAVLAVDPSSPFTGGSILGDR 102 (323)
T ss_pred HHHHHHHhhcC----CCCcEEEecCCCCCchHHHHHHHHHHHHHCCcEEEEEEECCCCCCCCccccccH
Confidence 45555555433 556799999999999999999987655 23333344556666777655555443
No 496
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=91.60 E-value=0.76 Score=49.49 Aligned_cols=53 Identities=17% Similarity=0.307 Sum_probs=38.2
Q ss_pred CCccccchHHHHHHHHHHhcC-CCCCCCCcEEEEEEccCCChHHHHHHHHHccc
Q 000594 153 EPAVYGRDEDKARILDMVLEN-DPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK 205 (1402)
Q Consensus 153 ~~~~vGr~~~~~~l~~~L~~~-~~~~~~~~~vi~I~G~gGiGKTtLa~~v~~~~ 205 (1402)
+..++|..-.++.|+..+..- ......++-|++.+|..|+||.-.|+.+++..
T Consensus 81 ~~~lfGQHla~~~Vv~alk~~~~n~~p~KPLvLSfHG~tGTGKN~Va~iiA~n~ 134 (344)
T KOG2170|consen 81 ARALFGQHLAKQLVVNALKSHWANPNPRKPLVLSFHGWTGTGKNYVAEIIAENL 134 (344)
T ss_pred HHHhhchHHHHHHHHHHHHHHhcCCCCCCCeEEEecCCCCCchhHHHHHHHHHH
Confidence 345778777777777766531 11112667899999999999999998888754
No 497
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=91.56 E-value=0.97 Score=54.09 Aligned_cols=41 Identities=24% Similarity=0.172 Sum_probs=29.7
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccccccccCceeEEEeCC
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDKLTEAFEPKAWVCVSH 220 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~~~~~f~~~~wv~~~~ 220 (1402)
..-.++.|.|.+|+|||||+.++.....+. =..++|++..+
T Consensus 92 ~~GsvilI~G~pGsGKTTL~lq~a~~~a~~-g~kvlYvs~EE 132 (454)
T TIGR00416 92 VPGSLILIGGDPGIGKSTLLLQVACQLAKN-QMKVLYVSGEE 132 (454)
T ss_pred cCCeEEEEEcCCCCCHHHHHHHHHHHHHhc-CCcEEEEECcC
Confidence 334799999999999999999987653222 13567777554
No 498
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=91.50 E-value=0.67 Score=53.41 Aligned_cols=100 Identities=17% Similarity=0.198 Sum_probs=54.6
Q ss_pred CCcEEEEEEccCCChHHHHHHHHHccc-c----ccccCceeEEEeCCCCCHHHHHHHHHHHhcCCCCCcCchHHHHHHHH
Q 000594 179 ANFRVIPLVGMGGIGKTTLAQEVYNDK-L----TEAFEPKAWVCVSHDFDVLRISKAILESITLSPCDLKDLNSVQLKLK 253 (1402)
Q Consensus 179 ~~~~vi~I~G~gGiGKTtLa~~v~~~~-~----~~~f~~~~wv~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~l~ 253 (1402)
..++=+-|||..|.|||.|.-.+|+.. + +-||. ..+.++-+.+..-......+. .+.
T Consensus 60 ~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~HFh--------------~Fm~~vh~~l~~~~~~~~~l~----~va 121 (362)
T PF03969_consen 60 PPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVHFH--------------EFMLDVHSRLHQLRGQDDPLP----QVA 121 (362)
T ss_pred CCCceEEEECCCCCchhHHHHHHHHhCCcccccccccc--------------HHHHHHHHHHHHHhCCCccHH----HHH
Confidence 445779999999999999999999864 2 12221 233333333322111222233 333
Q ss_pred HHhcCCeEEEEEeCCCcCChhh---HHHhhcccCCCCCCcEEEEEccch
Q 000594 254 EAVFKKKFLIVLDDVWSERYDL---WQALKSPFMAGAPGSRIIVTTRSM 299 (1402)
Q Consensus 254 ~~l~~k~~LlVlDdv~~~~~~~---~~~~~~~l~~~~~gs~iivTtR~~ 299 (1402)
+.+.++..||.||...-.+..+ ...+...+. ..|. |||+|-+.
T Consensus 122 ~~l~~~~~lLcfDEF~V~DiaDAmil~rLf~~l~--~~gv-vlVaTSN~ 167 (362)
T PF03969_consen 122 DELAKESRLLCFDEFQVTDIADAMILKRLFEALF--KRGV-VLVATSNR 167 (362)
T ss_pred HHHHhcCCEEEEeeeeccchhHHHHHHHHHHHHH--HCCC-EEEecCCC
Confidence 4455677799999975443332 122333332 2455 55555553
No 499
>COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=91.47 E-value=1.7 Score=42.65 Aligned_cols=85 Identities=18% Similarity=0.170 Sum_probs=54.6
Q ss_pred CCHHHHHHHHHHHhcCCCC------CcCchHHHHHHHHHHhcCCeEEEEEeCCCc----CChhhHHHhhcccCCCCCCcE
Q 000594 222 FDVLRISKAILESITLSPC------DLKDLNSVQLKLKEAVFKKKFLIVLDDVWS----ERYDLWQALKSPFMAGAPGSR 291 (1402)
Q Consensus 222 ~~~~~~~~~i~~~~~~~~~------~~~~~~~~~~~l~~~l~~k~~LlVlDdv~~----~~~~~~~~~~~~l~~~~~gs~ 291 (1402)
.+..+..+..+++++.... ....-++-...|.+.+...+-+++-|.--. ..-+...++.-.+ ....|+.
T Consensus 121 ~~~~~~A~~lL~~vGLg~Rl~HyP~qLSGGEQQRVAiARAfa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~l-nre~G~T 199 (228)
T COG4181 121 ADSRAGAKALLEAVGLGKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLLFAL-NRERGTT 199 (228)
T ss_pred ccHHHHHHHHHHHhCcccccccCccccCchHHHHHHHHHHhcCCCCEEeccCCCCCcchhHHHHHHHHHHHH-hhhcCce
Confidence 4566677888888877543 223344555567888888888999886422 1112223333333 2347888
Q ss_pred EEEEccchhhhhhcCC
Q 000594 292 IIVTTRSMDVASTMGS 307 (1402)
Q Consensus 292 iivTtR~~~v~~~~~~ 307 (1402)
.|+.|-++.+|..|..
T Consensus 200 lVlVTHD~~LA~Rc~R 215 (228)
T COG4181 200 LVLVTHDPQLAARCDR 215 (228)
T ss_pred EEEEeCCHHHHHhhhh
Confidence 9999999999988754
No 500
>TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit. This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown.
Probab=91.47 E-value=1.4 Score=47.54 Aligned_cols=23 Identities=35% Similarity=0.554 Sum_probs=20.9
Q ss_pred EEEEEEccCCChHHHHHHHHHcc
Q 000594 182 RVIPLVGMGGIGKTTLAQEVYND 204 (1402)
Q Consensus 182 ~vi~I~G~gGiGKTtLa~~v~~~ 204 (1402)
.+++|+|..|.|||||++.+...
T Consensus 7 e~~~l~G~nGsGKSTLl~~l~G~ 29 (223)
T TIGR03771 7 ELLGLLGPNGAGKTTLLRAILGL 29 (223)
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 58999999999999999999753
Done!