Query 000594
Match_columns 1402
No_of_seqs 515 out of 5545
Neff 10.0
Searched_HMMs 29240
Date Tue Mar 26 16:50:16 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000594.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_366-369//hhsearch_pdb/000594hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2a5y_B CED-4; apoptosis; HET: 1.0 1 1 404.7 25.1 319 154-495 128-473 (549)
2 3rgz_A Protein brassinosteroid 1.0 1 1 401.9 29.1 650 562-1390 69-767 (768)
3 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 360.2 26.0 311 150-494 120-453 (1249)
4 3rgz_A Protein brassinosteroid 1.0 1 1 358.6 24.6 108 563-672 93-208 (768)
5 1vt4_I APAF-1 related killer D 1.0 1 1 330.5 21.9 287 154-486 128-436 (1221)
6 1ziw_A TOLL-like receptor 3; i 1.0 1 1 320.6 38.9 242 1114-1382 382-637 (680)
7 1ziw_A TOLL-like receptor 3; i 1.0 1 1 313.2 33.1 99 570-670 25-127 (680)
8 1z6t_A APAF-1, apoptotic prote 1.0 1 1 304.9 25.9 306 153-491 123-450 (591)
9 3t6q_A CD180 antigen; protein- 1.0 1 1 293.1 33.0 98 571-669 34-134 (606)
10 3t6q_A CD180 antigen; protein- 1.0 1 1 287.5 29.8 98 572-671 14-112 (606)
No 1
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=1.00 E-value=1 Score=404.65 Aligned_cols=319 Identities=17% Similarity=0.214 Sum_probs=257.3
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHC---CCCCCCCCCEEEEEECCCC--CHHHHH
Q ss_conf 82013168899999998137999999928999981599909999999972---1011355861479928877--899999
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYN---DKLTEAFEPKAWVCVSHDF--DVLRIS 228 (1402)
Q Consensus 154 ~~~vgr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~---~~~~~~f~~~~wv~~~~~~--~~~~~~ 228 (1402)
+..|||+.++++|.++|..... ...++|+|+||||+||||||+++|+ ..++.+|+.++|+++++.. +...++
T Consensus 128 ~~~~GR~~~~~~l~~~L~~~~~---~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~ 204 (549)
T 2a5y_B 128 MTCYIREYHVDRVIKKLDEMCD---LDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLF 204 (549)
T ss_dssp CCSCCCHHHHHHHHHHHHHHTT---SSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCCCC---CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCEEEEEECCCCCCCHHHHH
T ss_conf 7607841799999998725157---8962899986999988999999998406987466995799997898787999999
Q ss_pred HHHHHHHCCCCC-------CCCCHHHHHHHHHHHHCCC-EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCHH
Q ss_conf 999998037999-------9675689999999983697-19999919976785049996501378999949999816356
Q 000594 229 KAILESITLSPC-------DLKDLNSVQLKLKEAVFKK-KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMD 300 (1402)
Q Consensus 229 ~~i~~~l~~~~~-------~~~~~~~~~~~l~~~l~~~-r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~ 300 (1402)
..++.+++.... +..+.+.+...+++.|+++ ||||||||||+.+...|... +||+||||||+..
T Consensus 205 ~~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~~~~~~~~~--------~gs~ilvTTR~~~ 276 (549)
T 2a5y_B 205 TDILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQEETIRWAQE--------LRLRCLVTTRDVE 276 (549)
T ss_dssp HHHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCHHHHHHHHH--------TTCEEEEEESBGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCEEEEEECCCCCHHHCCCCC--------CCCEEEEECCCHH
T ss_conf 99999985375534555533146999999999997689848999979997144154326--------9988999749779
Q ss_pred HHHHCCCCCCEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 56210788533322457995669999999651899999972079999999997199847999998642179874489997
Q 000594 301 VASTMGSGKNYELELKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTI 380 (1402)
Q Consensus 301 ~~~~~~~~~~~~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~ 380 (1402)
++..++.. ...+++++|+.++||+||.++++.... .+...+++++|+++|+|+|||++++|+.++.+ . ..|...
T Consensus 277 v~~~~~~~-~~~~~l~~L~~~ea~~Lf~~~a~~~~~---~~~~~~~~~~I~~~c~GlPLAl~~~g~~l~~~-~-w~~~~~ 350 (549)
T 2a5y_B 277 ISNAASQT-CEFIEVTSLEIDECYDFLEAYGMPMPV---GEKEEDVLNKTIELSSGNPATLMMFFKSCEPK-T-FEKMAQ 350 (549)
T ss_dssp GGGGCCSC-EEEEECCCCCHHHHHHHHHHTSCCCC-----CHHHHHHHHHHHHHTTCHHHHHHHHTTCCSS-S-HHHHHH
T ss_pred HHHHCCCC-CEEEECCCCCHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHHCCCHHHHHHHHHHHCCC-H-HHHHHH
T ss_conf 99970889-738989998989999999987448998---55689999999999599839999999984434-4-899987
Q ss_pred HHHHCCCCCCCCCHHHHHHHHHCCCCHHHHHHHH-----------HHCCCCCCCCCCHHHHHHHHHHH--CCCCCCCCCH
Q ss_conf 6310015799999669999973169387877986-----------73147989500579999999981--5853467743
Q 000594 381 LDSKIWNLQDKTEIPSVLKLSYHHLPSHLKRCFA-----------YCAILPKDYEFKEEELVLLWIAE--GLIQQSEDSK 447 (1402)
Q Consensus 381 l~~~~~~~~~~~~i~~~l~~s~~~L~~~~k~~~~-----------~la~fp~~~~i~~~~li~~w~a~--g~~~~~~~~~ 447 (1402)
+....+.. ...++..++.+||+.||+++|.||+ |||+||+++.|+ +.+|+|+ ||+.......
T Consensus 351 l~~~l~~~-~~~~i~~~l~~Sy~~L~~~lk~~f~~Ls~~er~l~~~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~ 425 (549)
T 2a5y_B 351 LNNKLESR-GLVGVECITPYSYKSLAMALQRCVEVLSDEDRSALAFAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQ 425 (549)
T ss_dssp HHHHHHHH-CSSTTCCCSSSSSSSHHHHHHHHHHTSCHHHHHHTTGGGSSCTTCCEE----HHHHHHHSCC-------CC
T ss_pred HHHHHHCC-CHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHEEEECCCCEEE----EEEEEEECCCEECCCCCCC
T ss_conf 57876136-477789897516202267999997526522336743235608997666----5331101355002677899
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCC-CCCCEEECHHHHHHHHHHHCCCEE
Q ss_conf 599999999999972756642489-989689805699999984038528
Q 000594 448 ELEDWGSKYFHDLLSRSMFQKSSN-SESKYVMHDLVHDLAQWASGETWF 495 (1402)
Q Consensus 448 ~~~~~~~~~l~~L~~~sll~~~~~-~~~~~~~H~lv~~~~~~~~~~e~~ 495 (1402)
..+++++ |+++|+++||++.... ...+|+|||+||+||++++.+++.
T Consensus 426 ~~~~~~~-~l~~L~~rsLl~~~~~~~~~~~~mHdlv~~~a~~~~~~~~~ 473 (549)
T 2a5y_B 426 LDDEVAD-RLKRLSKRGALLSGKRMPVLTFKIDHIIHMFLKHVVDAQTI 473 (549)
T ss_dssp CTHHHHH-HHHHTTTBSSCSEEECSSSCEEECCHHHHHHHHTTSCTHHH
T ss_pred CHHHHHH-HHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHHH
T ss_conf 9999999-99999875883671479804999676999999999889899
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=401.87 Aligned_cols=650 Identities=14% Similarity=0.072 Sum_probs=304.4
Q ss_pred HHHHCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCC-CCCH--HHHCCCCCCEEECCCCCCCCCCCHHH-H
Q ss_conf 421014899411998065014323554124444451001576442-1442--22057888499637843434576311-1
Q 000594 562 LSDLLPKCKKLRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQ-CLPE--VITSLFNLEILILSNCWFLLKLPSSI-G 637 (1402)
Q Consensus 562 ~~~~~~~~~~Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~-~lp~--~i~~L~~L~~L~L~~~~~~~~lp~~i-~ 637 (1402)
++..+..++.|++++++.+.+..+|+.|+++++|++|+|++|.+. .+|. .++++++|++|++++|......|..+ .
T Consensus 69 l~~~l~~L~~L~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~ 148 (768)
T 3rgz_A 69 VSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGL 148 (768)
T ss_dssp HHHHTTTCTTCCEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCC
T ss_pred CCHHHHCCCCCCCCCCCCCCCCCCCHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHC
T ss_conf 69657316802246786888678703324578899898989857870789678727889998989688267747977856
Q ss_pred CCCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCEECCCCCCCCHHCCCCCCCCCCEEEEECCCCCCCHHHHHHHCC
Q ss_conf 0122450132385432445647---6235342234630027898888100125001376089907557699333136306
Q 000594 638 NLVNLHHLDIEGAYQLCELPLG---MKELKCLRTLTNFIVGKDSGCALGELKNWKFLRGRLCISGLENVIDSQEANEAKL 714 (1402)
Q Consensus 638 ~L~~L~~L~l~~~~~l~~~p~~---i~~L~~L~~L~~~~~~~~~~~~~~~l~~L~~L~~~l~~~~l~~~~~~~~~~~~~l 714 (1402)
++++|++|++++|......|.. ++++++|++|+...+...... .+
T Consensus 149 ~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--------------------------------~~ 196 (768)
T 3rgz_A 149 KLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--------------------------------DV 196 (768)
T ss_dssp CCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCC--------------------------------BC
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHHHCCCCCCCEEECCCCCCCCCC--------------------------------CC
T ss_conf 3889998989798358858715566435898898989788034657--------------------------------84
Q ss_pred CCCCCCCEEEEEEECCCCCCCCCHHHHHHHHHHCCCCCCCCEEEEEEECCCCCCCCCCCCCCCCEEEEEEECCCCCCCCC
Q ss_conf 68888870389940289999967378998842049999933999975579999987677754541199892679999799
Q 000594 715 REKNDLEVLKLEWRARGDGDSVDEDREKNILDMLKPHCKIKRLEIHSYGGTRFPSWVGDSSFSKVAVLILRNCQRSTSLP 794 (1402)
Q Consensus 715 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~l~~l~~~~~L~~L~l~~~~~~~~p~~~~~~~~~~L~~L~L~~~~~~~~l~ 794 (1402)
.. .++|+.|.++++.....+..+ ..+++|+.|++++|.....+|
T Consensus 197 ~~----------------------------------l~~L~~L~Ls~n~l~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~ 240 (768)
T 3rgz_A 197 SR----------------------------------CVNLEFLDVSSNNFSTGIPFL--GDCSALQHLDISGNKLSGDFS 240 (768)
T ss_dssp TT----------------------------------CTTCCEEECCSSCCCSCCCBC--TTCCSCCEEECCSSCCCSCHH
T ss_pred CC----------------------------------CCCCCEEECCCCCCCCCCCCC--CCCCCCCEEECCCCCCCCCCC
T ss_conf 54----------------------------------786898989288278877111--269999989794885878165
Q ss_pred C-CCCCCCCCEEEECCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC
Q ss_conf 9-999678671665488773265540137876434655430110382223433646666411333742122200245465
Q 000594 795 P-LGQLCSLKDLTIGGMSALKSIGSEIYGEGCSKPFQSLQTLYFEDLQEWEHWEPNRDNDEHVQAFPRLRKLSIKKCPKL 873 (1402)
Q Consensus 795 ~-l~~l~~L~~L~L~~~~~~~~~~~~~~~~~~~~~f~~L~~L~l~~~~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l 873 (1402)
. ++.+++|+.|+++++.....++.. .+++|++|++.++.....+. ... ...+++|+.|++++| .+
T Consensus 241 ~~l~~l~~L~~L~Ls~n~l~~~~~~~--------~l~~L~~L~L~~n~l~~~ip-~~~----~~~~~~L~~L~Ls~n-~l 306 (768)
T 3rgz_A 241 RAISTCTELKLLNISSNQFVGPIPPL--------PLKSLQYLSLAENKFTGEIP-DFL----SGACDTLTGLDLSGN-HF 306 (768)
T ss_dssp HHTTTCSSCCEEECCSSCCEESCCCC--------CCTTCCEEECCSSEEEESCC-CCS----CTTCTTCSEEECCSS-EE
T ss_pred HHHHCCCCCCEEECCCCCCCCCCCCC--------CCCCCCEEECCCCCCCCCCC-HHH----HHHCCCCCEEECCCC-CC
T ss_conf 77744888898989888665716724--------36878989791785577258-888----844686889989689-67
Q ss_pred CCCCCC---CCCCCCEEEEECCCCC---C-CCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 379999---9999548998035872---1-34999875208997389862224898889987310034455411122334
Q 000594 874 SGRLPN---HLPSLEEIVIAGCMHL---A-VSLPSLPALCTMEIDGCKRLVCDGPSESKSPNKMTLCNISEFENWSSQKF 946 (1402)
Q Consensus 874 ~~~lp~---~l~~L~~L~i~~c~~l---~-~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~~~~~~l~~~~~~~~ 946 (1402)
.+.+|. .+++|+.|++.+|... . ..+..+++|+.|++++|...
T Consensus 307 ~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~------------------------------ 356 (768)
T 3rgz_A 307 YGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS------------------------------ 356 (768)
T ss_dssp EECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEE------------------------------
T ss_pred CCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHHCCCCCCEEECCCCCCC------------------------------
T ss_conf 78423677558776677897885257379788724888878848478437------------------------------
Q ss_pred CCCCEEEEECCCCCHHHHCCCCCCCCCCCCC-CCCEEEEECCCCCCCCCC-CCC--CCCCCEEEEECCCCCCCCCHHHHC
Q ss_conf 5301689924678301100499976666666-753467405888533223-347--897366988217884578500212
Q 000594 947 QKVEHLKIVGCEGFANEIRLGKPLQGLHSFT-CLKDLHIGICPTLVSLRN-ICF--LSSLSEITIEHCNALTSLTDGMIH 1022 (1402)
Q Consensus 947 ~~L~~L~i~~c~~l~~~~~~~~~~~~~~~l~-~L~~L~l~~~~~l~~~~~-~~~--l~~L~~L~l~~c~~l~~l~~~~~~ 1022 (1402)
+..+..+..++ +|+.|++++|.....++. ... +++|+.|++++|.....+|.. +.
T Consensus 357 --------------------~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~-l~ 415 (768)
T 3rgz_A 357 --------------------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT-LS 415 (768)
T ss_dssp --------------------ECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGG-GG
T ss_pred --------------------CCCCHHHHHHHCCCCEEECCCCCCCCCCCHHHHHCCCCCCCEEECCCCCCCCCCCHH-HH
T ss_conf --------------------623098986322771998627874787676665332477618989778465424877-75
Q ss_pred CCCCCHHHHHCCCCCCCCCCCC-CCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCEEECCCC
Q ss_conf 7874101220166676332224-796766689854577864201347776776310000125677743455530451588
Q 000594 1023 NNAQLKVLRIKGCHSLTSIARE-HLPSSLKAIEVEDCKTLQSVLDDRENSCTSSSVLEKNIKSSSGTYLDLESLSVFNCP 1101 (1402)
Q Consensus 1023 ~l~~L~~L~l~~c~~l~~~~~~-~~~~~L~~L~i~~c~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~c~ 1101 (1402)
.+++|+.|++++|..-..++.. ...++|+.|++++|.....++... ..++
T Consensus 416 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~------------------~~l~----------- 466 (768)
T 3rgz_A 416 NCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQEL------------------MYVK----------- 466 (768)
T ss_dssp GCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGG------------------GGCT-----------
T ss_pred CCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH------------------CCCC-----------
T ss_conf 68987989895884668546777449988989897881547189788------------------2877-----------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
Q ss_conf 87201488765533511023346764343235676666578993058631000113775565589632787757664436
Q 000594 1102 SLTCLCGGRLPVTLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIAERFHDDACLRSTWISNCENLKSLPKGL 1181 (1402)
Q Consensus 1102 ~l~~~~~~~~~~~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~l~~~l 1181 (1402)
+|+.|++++|.....++..+..+++|+.|++++|.....+|..+..+++|+.|++++|.....+|..+
T Consensus 467 ------------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l 534 (768)
T 3rgz_A 467 ------------TLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAEL 534 (768)
T ss_dssp ------------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGG
T ss_pred ------------CCEEEEECCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCEEECCCCCCCCCCCHHH
T ss_conf ------------73299901995137588788169989989753995189687688568999989897894337488777
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCCCC-CCCCCEEEC---------CCCC------------CCCCC--CCCCCCCCCEEE
Q ss_conf 78888771765067898636898888-752100001---------3456------------57789--999988745787
Q 000594 1182 SNLSHLHRISISGCHNLASLPEDALP-SNLVGVLIE---------NCDK------------LKAPL--PTGKLSSLQQLF 1237 (1402)
Q Consensus 1182 ~~l~~L~~L~l~~c~~l~~l~~~~~~-~~L~~L~l~---------~c~~------------l~~~~--~~~~l~~L~~L~ 1237 (1402)
..+++|+.|++++|+-...+|...+. ..+..+.+. +... +.... ....++.++.++
T Consensus 535 ~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (768)
T 3rgz_A 535 GDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614 (768)
T ss_dssp GGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSC
T ss_pred CCCCCCCEEECCCCCCCCCCCHHHHCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHCCCCCCCCC
T ss_conf 08898998989888468827957860421223201345421111344432222332221001355632320023211001
Q ss_pred ECCCCCCCCCCC-CCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCC
Q ss_conf 026999654689-9988997626721688876553246677676550540578986315311227768775354002467
Q 000594 1238 LKKCPGIVFFPE-EGLSTNLTSVGISGDNIYKPLVKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDF 1316 (1402)
Q Consensus 1238 l~~c~~l~~~~~-~~~~~~L~~L~l~~~~~~~~~~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~ 1316 (1402)
+..+..-..++. .+.+++|+.|++++|+....++. .+..+++|+.|++++|.....+|.... .+++|+.|+++++
T Consensus 615 l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~-~l~~l~~L~~L~Ls~N~l~g~ip~~l~---~L~~L~~LdLs~N 690 (768)
T 3rgz_A 615 ITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPK-EIGSMPYLFILNLGHNDISGSIPDEVG---DLRGLNILDLSSN 690 (768)
T ss_dssp TTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCG-GGGGCTTCCEEECCSSCCCSCCCGGGG---GCTTCCEEECCSS
T ss_pred CCCCEECCCCCHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCEEECCCCCCCCCCCHHHH---CCCCCCEEECCCC
T ss_conf 133100462743340335665797858801555877-884141578784868803887896784---7778998989788
Q ss_pred CCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCHH----HHHHCCCCCCCCCCCCCCCEEE
Q ss_conf 8864589334678788882523688887778988886643521024991318----8650799998774247784155
Q 000594 1317 PKLERLSSKGFQYLVSLEHLRVISCPNFTSFPEAGFPSSLLSLEIRGCPLLE----NKCKKGKGQEWPKIACIPYPLI 1390 (1402)
Q Consensus 1317 ~~L~~l~~~~l~~l~~L~~L~i~~c~~l~~l~~~~~~~sL~~L~i~~cp~l~----~~~~~~~~~~~~~~~~i~~~~~ 1390 (1402)
.--..+| ..+.++++|++|++++|+--..+|.++.+.++....+.+||.|. ..|....+++|++++|++.++-
T Consensus 691 ~l~g~ip-~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~~C~~~~~~~~~~~~~~~~~~~ 767 (768)
T 3rgz_A 691 KLDGRIP-QAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPLPRCDPSNADGYAHHQRSHHHHH 767 (768)
T ss_dssp CCEECCC-GGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTSCCCCSCC---------------
T ss_pred CCCCCCC-HHHHCCCCCCEEECCCCCCCCCCCCCHHHCCCCHHHHCCCCHHCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 0238688-6775788789787968815560899601024897775698321088776788876688898887656678
No 3
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=360.23 Aligned_cols=311 Identities=20% Similarity=0.325 Sum_probs=242.4
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC--CCCCCC-CEEEEEECCCC--CH
Q ss_conf 88898201316889999999813799999992899998159990999999997210--113558-61479928877--89
Q 000594 150 LTSEPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK--LTEAFE-PKAWVCVSHDF--DV 224 (1402)
Q Consensus 150 ~~~~~~~vgr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~--~~~~f~-~~~wv~~~~~~--~~ 224 (1402)
++..+.||||++++++|.++|.... ...++++|+||||+||||||+++|++. ...+|. .++|+++++.. +.
T Consensus 120 p~~~~~~vgR~~~~~~l~~~l~~~~----~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 195 (1249)
T 3sfz_A 120 PQRPVIFVTRKKLVHAIQQKLWKLN----GEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSGL 195 (1249)
T ss_dssp CCCCSSCCCCHHHHHHHHHHHHTTT----TSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHHH
T ss_pred CCCCCEECCHHHHHHHHHHHHHHCC----CCCCEEEEEECCCCCHHHHHHHHHCCHHHHHHHCCCEEEEEEECCCCCHHH
T ss_conf 9998641257999999999986135----887779999189888889999986075678862788179999788572679
Q ss_pred HHHHHHHHHHHCCCCC----CCCCHHHHHHHHHHHHCCC--EEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCC
Q ss_conf 9999999998037999----9675689999999983697--199999199767850499965013789999499998163
Q 000594 225 LRISKAILESITLSPC----DLKDLNSVQLKLKEAVFKK--KFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRS 298 (1402)
Q Consensus 225 ~~~~~~i~~~l~~~~~----~~~~~~~~~~~l~~~l~~~--r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~ 298 (1402)
...+..++..+..... ...+.+.+...++..+.++ ||||||||||+. ..|.. ..+|++||||||+
T Consensus 196 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~--~~~~~-------~~~~~~ilvTtR~ 266 (1249)
T 3sfz_A 196 LMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP--WVLKA-------FDNQCQILLTTRD 266 (1249)
T ss_dssp HHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH--HHHTT-------TCSSCEEEEEESS
T ss_pred HHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEEEECCCCH--HHHHH-------HCCCCEEEEECCC
T ss_conf 99999999986553033347887778999999999735678789999567997--78876-------3689789999277
Q ss_pred HHHHHHC-CCCCCEEECCCC-CCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHH
Q ss_conf 5656210-788533322457-99566999999965189999997207999999999719984799999864217987448
Q 000594 299 MDVASTM-GSGKNYELELKL-LSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDE 376 (1402)
Q Consensus 299 ~~~~~~~-~~~~~~~~~l~~-l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~ 376 (1402)
+.++..+ ..... +.+++ |+++++++||...++... +...+.+++|+++|+|+||||+++|++++.+. ..
T Consensus 267 ~~~~~~~~~~~~~--~~~~~~l~~~~a~~l~~~~~~~~~-----~~~~~~~~~i~~~~~glPLal~~~~~~l~~~~--~~ 337 (1249)
T 3sfz_A 267 KSVTDSVMGPKHV--VPVESGLGREKGLEILSLFVNMKK-----EDLPAEAHSIIKECKGSPLVVSLIGALLRDFP--NR 337 (1249)
T ss_dssp TTTTTTCCSCBCC--EECCSSCCHHHHHHHHHHHHTSCS-----TTCCTHHHHHHHHTTTCHHHHHHHHHHHHHSS--SC
T ss_pred HHHHHHHCCCCEE--EEECCCCCHHHHHHHHHHHHCCCH-----HHCCHHHHHHHHHHCCCHHHHHHHHHHHHCCH--HH
T ss_conf 8998763488437--982588887889999998657981-----34838899999984997799999999862480--57
Q ss_pred HHHHHHHHCCCC----CC-----CCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCH
Q ss_conf 999763100157----99-----999669999973169387877986731479895005799999999815853467743
Q 000594 377 WRTILDSKIWNL----QD-----KTEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSK 447 (1402)
Q Consensus 377 w~~~l~~~~~~~----~~-----~~~i~~~l~~s~~~L~~~~k~~~~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~ 447 (1402)
|...+....... .. ...+..++.+||+.|++++|+||+|||+||+++.|+...++.+|.++
T Consensus 338 ~~~~l~~l~~~~~~~~~~~~~~~~~~~~~~l~~s~~~L~~~~~~~~~~l~~f~~~~~i~~~~~~~~~~~~---------- 407 (1249)
T 3sfz_A 338 WAYYLRQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCVLWDLE---------- 407 (1249)
T ss_dssp HHHHHHHHHSCCCCCSSCTTCTTHHHHHHHHHHHHHTSCTTTHHHHHHGGGSCTTCCEEHHHHHHHHTCC----------
T ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCEECHHHHHHHHCCC----------
T ss_conf 9999999865044303465564467799999989986799999999972813799751899999885898----------
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCC-CCCEEECHHHHHHHHHHHCCCE
Q ss_conf 5999999999999727566424899-8968980569999998403852
Q 000594 448 ELEDWGSKYFHDLLSRSMFQKSSNS-ESKYVMHDLVHDLAQWASGETW 494 (1402)
Q Consensus 448 ~~~~~~~~~l~~L~~~sll~~~~~~-~~~~~~H~lv~~~~~~~~~~e~ 494 (1402)
++.++.++++|+++||++....+ ...|+||++||+|++..+.++.
T Consensus 408 --~~~~~~~l~~L~~~sl~~~~~~~~~~~~~~h~l~~~~~~~~~~~~~ 453 (1249)
T 3sfz_A 408 --TEEVEDILQEFVNKSLLFCNRNGKSFCYYLHDLQVDFLTEKNRSQL 453 (1249)
T ss_dssp --HHHHHHHHHHHHHTTSCEEEESSSSEEEECCHHHHHHHHHHTGGGH
T ss_pred --HHHHHHHHHHHHHCCCEEEECCCCCEEEEECHHHHHHHHHHHHHHH
T ss_conf --8899999999974463389637981189966899999874506789
No 4
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=1.00 E-value=1 Score=358.57 Aligned_cols=108 Identities=22% Similarity=0.150 Sum_probs=70.9
Q ss_pred HHHCCCCCCCCEEEECCCCCC-CCCC--CCCCCCCCCCEECCCCCCCC-CCHHH-HCCCCCCEEECCCCCCCCCCCHH--
Q ss_conf 210148994119980650143-2355--41244444510015764421-44222-05788849963784343457631--
Q 000594 563 SDLLPKCKKLRVLSLGRYLIT-EVPV--SIGCLKHLRYLNFSNSWIQC-LPEVI-TSLFNLEILILSNCWFLLKLPSS-- 635 (1402)
Q Consensus 563 ~~~~~~~~~Lr~L~L~~~~i~-~lp~--~i~~l~~Lr~L~Ls~~~i~~-lp~~i-~~L~~L~~L~L~~~~~~~~lp~~-- 635 (1402)
+..|..+++|++|+|++|.+. .+|. .++++++|++|+|++|.+.. +|..+ .++++|++|++++|......|..
T Consensus 93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~ 172 (768)
T 3rgz_A 93 VSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWV 172 (768)
T ss_dssp CCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHH
T ss_pred CHHHCCCCCCCEEECCCCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCEEECCCCCCCCCCCHHHH
T ss_conf 03324578899898989857870789678727889998989688267747977856388999898979835885871556
Q ss_pred -HHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf -1101224501323854324456476235342234630
Q 000594 636 -IGNLVNLHHLDIEGAYQLCELPLGMKELKCLRTLTNF 672 (1402)
Q Consensus 636 -i~~L~~L~~L~l~~~~~l~~~p~~i~~L~~L~~L~~~ 672 (1402)
+.++++|++|++++|......| ++.+++|++|+..
T Consensus 173 ~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls 208 (768)
T 3rgz_A 173 LSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVS 208 (768)
T ss_dssp HTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECC
T ss_pred HHCCCCCCCEEECCCCCCCCCCC--CCCCCCCCEEECC
T ss_conf 64358988989897880346578--4547868989892
No 5
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=1.00 E-value=1 Score=330.46 Aligned_cols=287 Identities=17% Similarity=0.227 Sum_probs=225.2
Q ss_pred CCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC-CCCCCCC-EEEEEECCCCCHHHHHHHH
Q ss_conf 8201316889999999813799999992899998159990999999997210-1135586-1479928877899999999
Q 000594 154 PAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-LTEAFEP-KAWVCVSHDFDVLRISKAI 231 (1402)
Q Consensus 154 ~~~vgr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~~~~f~~-~~wv~~~~~~~~~~~~~~i 231 (1402)
+..|||+.++++|.++|... ...++++|+||||+||||||+++|++. +..+|+. ++|+++++.++...++..+
T Consensus 128 k~~VGRe~eLeeL~elL~~~-----d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~~~d~~~IL~~L 202 (1221)
T 1vt4_I 128 KYNVSRLQPYLKLRQALLEL-----RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEML 202 (1221)
T ss_dssp CSCCCCHHHHHHHHHHHHHC-----CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCCSSSHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHCC-----CCCEEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCHHHHHHHH
T ss_conf 87789289999999997435-----8971899976999667999999997149887489938999828999999999999
Q ss_pred HHHHCCCC---C---C-----CCCHHHHHHHHHHHH---CCCEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECC
Q ss_conf 99803799---9---9-----675689999999983---69719999919976785049996501378999949999816
Q 000594 232 LESITLSP---C---D-----LKDLNSVQLKLKEAV---FKKKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTR 297 (1402)
Q Consensus 232 ~~~l~~~~---~---~-----~~~~~~~~~~l~~~l---~~~r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR 297 (1402)
+..++... . + ..+.+.+...+++.+ .++|+||||||||+. +.|+.+ + +||+||||||
T Consensus 203 l~lL~~i~~~~~~~~d~~~~ip~~leeL~e~Lr~lL~~l~~KRvLLVLDDVwd~--eqLe~f----~---pGSRILVTTR 273 (1221)
T 1vt4_I 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNA--KAWNAF----N---LSCKILLTTR 273 (1221)
T ss_dssp HHHHHHHCSSSTTTSCCCSSHHHHHHHHHHHHHHHHHHSTTSSCEEEEESCCCH--HHHHHH----H---SSCCEEEECS
T ss_pred HHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCEEEEEECCCHH--HHHHHH----C---CCEEEEEECC
T ss_conf 999862272102200134679999999999999999850478879987186818--999864----7---9829999443
Q ss_pred CHHHHHHCCCCCCEEECCC----CCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCC-
Q ss_conf 3565621078853332245----79956699999996518999999720799999999971998479999986421798-
Q 000594 298 SMDVASTMGSGKNYELELK----LLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKE- 372 (1402)
Q Consensus 298 ~~~~~~~~~~~~~~~~~l~----~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~- 372 (1402)
+..++..+.....+.++++ +|+.+|||+||.+.. +.. . .+...+ .|+|+|||++++|+.++.+.
T Consensus 274 d~~Va~~l~g~~vy~LeL~d~dL~LS~eEA~eLF~~~~-g~~----~---eeL~~e---ICgGLPLALkLaGs~Lr~k~~ 342 (1221)
T 1vt4_I 274 FKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYL-DCR----P---QDLPRE---VLTTNPRRLSIIAESIRDGLA 342 (1221)
T ss_dssp CSHHHHHHHHHSSCEEEECSSSSCCCHHHHHHHHHHHH-CCC----T---TTHHHH---HCCCCHHHHHHHHHHHHHSCS
T ss_pred CHHHHHHCCCCEEEEECCCCCCCCCCHHHHHHHHHHHC-CCC----H---HHHHHH---HHCCCHHHHHHHHHHHHCCCC
T ss_conf 73799866897089946865568969999999999974-998----8---999999---969899999999999848899
Q ss_pred CHHHHHHHHHHHCCCCCCCCCHHHHHHHHHCCCCHHH-HHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 7448999763100157999996699999731693878-779867314798950057999999998158534677435999
Q 000594 373 RVDEWRTILDSKIWNLQDKTEIPSVLKLSYHHLPSHL-KRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELED 451 (1402)
Q Consensus 373 ~~~~w~~~l~~~~~~~~~~~~i~~~l~~s~~~L~~~~-k~~~~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 451 (1402)
..+.|... ....+..++.+||+.||++. |+||++||+||+++.|+.+.++.+|+++| ++
T Consensus 343 s~eeW~~~---------~~~~I~aaLelSYd~Lp~eelK~cFL~LAIFPed~~I~~elLa~LW~aeG-----------ee 402 (1221)
T 1vt4_I 343 TWDNWKHV---------NCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVI-----------KS 402 (1221)
T ss_dssp SHHHHHHC---------SCHHHHHHHHHHHHHSCTTHHHHHHHHTTSSCTTSCEEHHHHHHHHCSSC-----------SH
T ss_pred CHHHHHCC---------CHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCCCCCCHHHHHHHHCCCC-----------HH
T ss_conf 79998669---------86189999999998488999999999971779999877999998766778-----------89
Q ss_pred HHHHHHHHHHHCCCCCCCCCCCCCEEECHHHHHHH
Q ss_conf 99999999972756642489989689805699999
Q 000594 452 WGSKYFHDLLSRSMFQKSSNSESKYVMHDLVHDLA 486 (1402)
Q Consensus 452 ~~~~~l~~L~~~sll~~~~~~~~~~~~H~lv~~~~ 486 (1402)
.++.++++|+++||++... ...+|+|||++++++
T Consensus 403 dAe~~L~eLvdRSLLq~d~-~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 403 DVMVVVNKLHKYSLVEKQP-KESTISIPSIYLELK 436 (1221)
T ss_dssp HHHHHHHHHHTSSSSSBCS-SSSEEBCCCHHHHHH
T ss_pred HHHHHHHHHHHHCCEEEEC-CCCEEEEHHHHHHHH
T ss_conf 9999999999619889868-999898609999985
No 6
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=320.57 Aligned_cols=242 Identities=17% Similarity=0.170 Sum_probs=113.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCCC-CCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 33511023346764343235676666578993058631000-11377556558963278775766443678888771765
Q 000594 1114 TLKRLDIKNCDNFKVLTSECQLPVAVEELTIISCSNLESIA-ERFHDDACLRSTWISNCENLKSLPKGLSNLSHLHRISI 1192 (1402)
Q Consensus 1114 ~L~~L~l~~c~~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~c~~l~~l~~~l~~l~~L~~L~l 1192 (1402)
+|+.|++++|......+..+..+++|+.|++++|.....++ ..+..+++|+.|++++|......+..+..+++|+.|++
T Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l 461 (680)
T 1ziw_A 382 PLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLML 461 (680)
T ss_dssp CCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEEC
T ss_pred CCCEEECCCCCCCEECHHHHHCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCEECHHHHHCCCCCCCCHH
T ss_conf 67668899997776775442077888888677875754357553257546127844899754227645500754310110
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCC--CCCCCCCEEEECCCCCCCCC
Q ss_conf 0678986368988887521000013456577899999887457870269996546899--98899762672168887655
Q 000594 1193 SGCHNLASLPEDALPSNLVGVLIENCDKLKAPLPTGKLSSLQQLFLKKCPGIVFFPEE--GLSTNLTSVGISGDNIYKPL 1270 (1402)
Q Consensus 1193 ~~c~~l~~l~~~~~~~~L~~L~l~~c~~l~~~~~~~~l~~L~~L~l~~c~~l~~~~~~--~~~~~L~~L~l~~~~~~~~~ 1270 (1402)
++|. ++.+... +..+..+++|+.|++++|. +..++.. +.+++|+.|++++|......
T Consensus 462 ~~n~-l~~~~~~-------------------p~~~~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~ 520 (680)
T 1ziw_A 462 RRVA-LKNVDSS-------------------PSPFQPLRNLTILDLSNNN-IANINDDMLEGLEKLEILDLQHNNLARLW 520 (680)
T ss_dssp TTSC-CBCTTCS-------------------SCTTTTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSCCGGGG
T ss_pred CCCC-CCCCCCC-------------------CCCCCCCCCCCEEECCCCC-CCCCCHHHHCCCCCCCEEECCCCCCCCCC
T ss_conf 1464-4225667-------------------7645557878999899998-77679446345534688858899730000
Q ss_pred -------CCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCEEECCCCCC
Q ss_conf -------3246677676550540578986315311227768775354002467886458933467878888252368888
Q 000594 1271 -------VKWGFHKLTSLRELSIHGCSDAVSFPEVEKGVILPTTLTSIGISDFPKLERLSSKGFQYLVSLEHLRVISCPN 1343 (1402)
Q Consensus 1271 -------~~~~~~~l~~L~~L~l~~c~~l~~~~~~~~~~~~~~~L~~L~l~~~~~L~~l~~~~l~~l~~L~~L~i~~c~~ 1343 (1402)
+...+..+++|+.|++++| .+..+|. ..+..+++|+.|++.+ ++++.++...+.++++|+.|++++ +.
T Consensus 521 ~~~~~~~~~~~~~~l~~L~~L~L~~N-~l~~i~~--~~~~~l~~L~~L~Ls~-N~l~~l~~~~~~~l~~L~~L~L~~-N~ 595 (680)
T 1ziw_A 521 KHANPGGPIYFLKGLSHLHILNLESN-GFDEIPV--EVFKDLFELKIIDLGL-NNLNTLPASVFNNQVSLKSLNLQK-NL 595 (680)
T ss_dssp STTSTTSCCCTTTTCTTCCEEECCSS-CCCCCCT--TTTTTCTTCCEEECCS-SCCCCCCTTTTTTCTTCCEEECTT-SC
T ss_pred HHHCCCCCCHHHCCCCCCCEEECCCC-CCCCCCH--HHCCCCCCCCEEECCC-CCCCCCCHHHHCCCCCCCEEECCC-CC
T ss_conf 00046774142337998888889999-7887797--7734666752238999-977767976837898888898999-96
Q ss_pred CCCCCCCCC---CCCCCCCCCCCCCCHHHHHHC-CCCCCCCCC
Q ss_conf 777898888---664352102499131886507-999987742
Q 000594 1344 FTSFPEAGF---PSSLLSLEIRGCPLLENKCKK-GKGQEWPKI 1382 (1402)
Q Consensus 1344 l~~l~~~~~---~~sL~~L~i~~cp~l~~~~~~-~~~~~~~~~ 1382 (1402)
++.++...+ +++|+.+++++||-..+ |.. .+-..|.+.
T Consensus 596 l~~~~~~~~~~~~~~L~~l~l~~N~~~c~-c~~~~~~~~~~~~ 637 (680)
T 1ziw_A 596 ITSVEKKVFGPAFRNLTELDMRFNPFDCT-CESIAWFVNWINE 637 (680)
T ss_dssp CCBCCHHHHHHHHTTCSEEECTTCCCCBC-CCCCSSEECCSSC
T ss_pred CCCCCHHHHCCCCCCCCEEECCCCCCCCC-CCCHHHHHHHHHH
T ss_conf 87059668301146657798318970257-7668999999873
No 7
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=1.00 E-value=1 Score=313.24 Aligned_cols=99 Identities=23% Similarity=0.266 Sum_probs=55.4
Q ss_pred CCCCEEEECCCCCCCCCC-CCCCCCCCCCEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCH-HHHCCCCCCCCC
Q ss_conf 941199806501432355-412444445100157644214-42220578884996378434345763-111012245013
Q 000594 570 KKLRVLSLGRYLITEVPV-SIGCLKHLRYLNFSNSWIQCL-PEVITSLFNLEILILSNCWFLLKLPS-SIGNLVNLHHLD 646 (1402)
Q Consensus 570 ~~Lr~L~L~~~~i~~lp~-~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~-~i~~L~~L~~L~ 646 (1402)
+.+++|+|++|.+..+|. .|+++++|++|++++|.+..+ |..|+++++|++|++++| .+..+|. .|+.+++|++|+
T Consensus 25 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n-~l~~l~~~~~~~l~~L~~L~ 103 (680)
T 1ziw_A 25 TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN-ELSQLSDKTFAFCTNLTELH 103 (680)
T ss_dssp TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS-CCCCCCTTTTTTCTTCSEEE
T ss_pred CCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCCCCCCCCHHHHHCCCCCCEEECCCC-CCCCCCHHHHCCCCCCCEEE
T ss_conf 88768889899778759788717876758878899648569778740667688889998-56756854530388889898
Q ss_pred CCCCCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 23854324456-4762353422346
Q 000594 647 IEGAYQLCELP-LGMKELKCLRTLT 670 (1402)
Q Consensus 647 l~~~~~l~~~p-~~i~~L~~L~~L~ 670 (1402)
+++|. +..+| ..|+++++|++|+
T Consensus 104 L~~n~-l~~~~~~~~~~l~~L~~L~ 127 (680)
T 1ziw_A 104 LMSNS-IQKIKNNPFVKQKNLITLD 127 (680)
T ss_dssp CCSSC-CCCCCSCTTTTCTTCCEEE
T ss_pred CCCCC-CCCCCHHHCCCCCCCCEEE
T ss_conf 98996-6853966741567888898
No 8
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=1.00 E-value=1 Score=304.91 Aligned_cols=306 Identities=20% Similarity=0.341 Sum_probs=230.3
Q ss_pred CCCCCCCHHHHHHHHHHHHCCCCCCCCCCEEEEEECCCCCHHHHHHHHHHCCC-C-CCCCC-CEEEEEECCCCC--HHHH
Q ss_conf 98201316889999999813799999992899998159990999999997210-1-13558-614799288778--9999
Q 000594 153 EPAVYGRDEDKARILDMVLENDPSDAANFRVIPLVGMGGIGKTTLAQEVYNDK-L-TEAFE-PKAWVCVSHDFD--VLRI 227 (1402)
Q Consensus 153 ~~~~vgr~~~~~~i~~~L~~~~~~~~~~~~vi~I~G~gGiGKTtLA~~v~~~~-~-~~~f~-~~~wv~~~~~~~--~~~~ 227 (1402)
++.||||+.+++++.+++.... ...++++|+||||+||||||.+++++. . ..+|. .++|++++.... ....
T Consensus 123 ~~~~vGR~~~l~~L~~~L~~~~----~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~~~~ 198 (591)
T 1z6t_A 123 PVVFVTRKKLVNAIQQKLSKLK----GEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGLLMK 198 (591)
T ss_dssp CSSCCCCHHHHHHHHHHHTTST----TSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHHHHH
T ss_pred CCEECCCHHHHHHHHHHHHCCC----CCCCEEEEECCCCCCHHHHHHHHHHCHHHHHHHCCCCEEEEECCCCCHHHHHHH
T ss_conf 8714052999999999986036----888469997699898899999998355688852899659997787766889999
Q ss_pred HHHHHHHHCCC----CCCCCCHHHHHHHHHHHHCC--CEEEEEEECCCCCCHHHHHHHHCCCCCCCCCCEEEEECCCHHH
Q ss_conf 99999980379----99967568999999998369--7199999199767850499965013789999499998163565
Q 000594 228 SKAILESITLS----PCDLKDLNSVQLKLKEAVFK--KKFLIVLDDVWSERYDLWQALKSPFMAGAPGSRIIVTTRSMDV 301 (1402)
Q Consensus 228 ~~~i~~~l~~~----~~~~~~~~~~~~~l~~~l~~--~r~LlVlDdv~~~~~~~~~~~~~~l~~~~~gs~iivTtR~~~~ 301 (1402)
+..++..++.. .....+.+.....++..+.+ +++||||||+|+. ..+ .++ .+|++||||||+..+
T Consensus 199 l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~--~~l----~~l---~~~~~ilvTsR~~~~ 269 (591)
T 1z6t_A 199 LQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS--WVL----KAF---DSQCQILLTTRDKSV 269 (591)
T ss_dssp HHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH--HHH----HTT---CSSCEEEEEESCGGG
T ss_pred HHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHCCCCCCEEEEEECCCCH--HHH----HHH---CCCCEEEEECCCCHH
T ss_conf 99999985035565567998899999999999706799869998589987--999----876---379869998988177
Q ss_pred HHHCCCCCCEEEC-CCCCCHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHCCCCCHHHHHHH
Q ss_conf 6210788533322-457995669999999651899999972079999999997199847999998642179874489997
Q 000594 302 ASTMGSGKNYELE-LKLLSDDDRWSVFVNHAFEGRDAGTHGNFESARQRVVEKCKGLPLAARALGGLLRSKERVDEWRTI 380 (1402)
Q Consensus 302 ~~~~~~~~~~~~~-l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~g~Plal~~~~~~l~~~~~~~~w~~~ 380 (1402)
+..+.. ..+.+. +++|+.++++++|...++.. .....+.+.+|+++|+|+|+|++++|+.++... ..|...
T Consensus 270 ~~~~~~-~~~~v~~l~~L~~~ea~~L~~~~~~~~-----~~~~~~~~~~i~~~~~G~PLal~~~a~~l~~~~--~~w~~~ 341 (591)
T 1z6t_A 270 TDSVMG-PKYVVPVESSLGKEKGLEILSLFVNMK-----KADLPEQAHSIIKECKGSPLVVSLIGALLRDFP--NRWEYY 341 (591)
T ss_dssp GTTCCS-CEEEEECCSSCCHHHHHHHHHHHHTSC-----GGGSCTHHHHHHHHHTTCHHHHHHHHHHHHHST--TCHHHH
T ss_pred HHHCCC-CCEEEECCCCCCHHHHHHHHHHHHCCC-----CCCCCHHHHHHHHHHCCCCHHHHHHHHHHHCCC--HHHHHH
T ss_conf 773489-826861588999899999999871898-----310459999999995898379999999984484--359999
Q ss_pred HHHHCCCC----C-----CCCCHHHHHHHHHCCCCHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCHHHHH
Q ss_conf 63100157----9-----99996699999731693878779867314798950057999999998158534677435999
Q 000594 381 LDSKIWNL----Q-----DKTEIPSVLKLSYHHLPSHLKRCFAYCAILPKDYEFKEEELVLLWIAEGLIQQSEDSKELED 451 (1402)
Q Consensus 381 l~~~~~~~----~-----~~~~i~~~l~~s~~~L~~~~k~~~~~la~fp~~~~i~~~~li~~w~a~g~~~~~~~~~~~~~ 451 (1402)
+....... . ...++..++..||+.||++.|.||+++|+||+++.|+...+..+|.++ .+
T Consensus 342 l~~l~~~~~~~~~~~~~~~~~~l~~~l~~s~~~L~~~~~~~l~~la~f~~~~~i~~~~l~~l~~~~------------~~ 409 (591)
T 1z6t_A 342 LKQLQNKQFKRIRKSSSYDYEALDEAMSISVEMLREDIKDYYTDLSILQKDVKVPTKVLCILWDME------------TE 409 (591)
T ss_dssp HHHHHSCCCCCSSCCCSSCCHHHHHHHHHHHHTSCTTTHHHHHHGGGCCTTCCEEHHHHHHHHTCC------------HH
T ss_pred HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHCCCCCCCCCCCHHHHHHHHCCC------------HH
T ss_conf 999988689876511465437899999999986899999999974556799850899999996658------------89
Q ss_pred HHHHHHHHHHHCCCCCCCCC-CCCCEEECHHHHHHHHHHHC
Q ss_conf 99999999972756642489-98968980569999998403
Q 000594 452 WGSKYFHDLLSRSMFQKSSN-SESKYVMHDLVHDLAQWASG 491 (1402)
Q Consensus 452 ~~~~~l~~L~~~sll~~~~~-~~~~~~~H~lv~~~~~~~~~ 491 (1402)
.+..++++|+++||++.... ....|+||+++|++++....
T Consensus 410 ~~~~~l~~L~~~~Ll~~~~~~~~~~~~~H~lv~~~~~~~~~ 450 (591)
T 1z6t_A 410 EVEDILQEFVNKSLLFCDRNGKSFRYYLHDLQVDFLTEKNC 450 (591)
T ss_dssp HHHHHHHHHHHTTSSEEEEETTEEEEECCHHHHHHHHHHTG
T ss_pred HHHHHHHHHHHCCCEEEECCCCCCEEEECHHHHHHHHHHHH
T ss_conf 99999999985958688548985679976899999986535
No 9
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=293.06 Aligned_cols=98 Identities=15% Similarity=0.260 Sum_probs=59.3
Q ss_pred CCCEEEECCCCCCCC-CCCCCCCCCCCCEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCC
Q ss_conf 411998065014323-55412444445100157644214-4222057888499637843434576311101224501323
Q 000594 571 KLRVLSLGRYLITEV-PVSIGCLKHLRYLNFSNSWIQCL-PEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIE 648 (1402)
Q Consensus 571 ~Lr~L~L~~~~i~~l-p~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~ 648 (1402)
.+++|+|++|.++.+ |..|+++++|++|+|++|.+..+ |..|.++++|++|++++|......|..|+.+++|++|+++
T Consensus 34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 113 (606)
T 3t6q_A 34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI 113 (606)
T ss_dssp TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCCCCCCCCHHHHCCCCCCCEEECC
T ss_conf 67589815873471796672567665289788983552485113684336764488985654586552344215376521
Q ss_pred CCCCCCCC-CCCCCCCCCCCCC
Q ss_conf 85432445-6476235342234
Q 000594 649 GAYQLCEL-PLGMKELKCLRTL 669 (1402)
Q Consensus 649 ~~~~l~~~-p~~i~~L~~L~~L 669 (1402)
+|. +..+ |..++.+++|++|
T Consensus 114 ~n~-i~~l~~~~~~~l~~L~~L 134 (606)
T 3t6q_A 114 QTG-ISSIDFIPLHNQKTLESL 134 (606)
T ss_dssp TSC-CSCGGGSCCTTCTTCCEE
T ss_pred CCC-CCCCCCCHHCCCCCCCEE
T ss_conf 267-665781012237822389
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=1.00 E-value=1 Score=287.49 Aligned_cols=98 Identities=16% Similarity=0.195 Sum_probs=78.2
Q ss_pred CCEEEECCCCCCCCCCCCCCCCCCCCEECCCCCCCCC-CHHHHCCCCCCEEECCCCCCCCCCCHHHHCCCCCCCCCCCCC
Q ss_conf 1199806501432355412444445100157644214-422205788849963784343457631110122450132385
Q 000594 572 LRVLSLGRYLITEVPVSIGCLKHLRYLNFSNSWIQCL-PEVITSLFNLEILILSNCWFLLKLPSSIGNLVNLHHLDIEGA 650 (1402)
Q Consensus 572 Lr~L~L~~~~i~~lp~~i~~l~~Lr~L~Ls~~~i~~l-p~~i~~L~~L~~L~L~~~~~~~~lp~~i~~L~~L~~L~l~~~ 650 (1402)
-+.+++++..++.+|..+.. ++++|++++|.++.+ |..|.++++|++|++++|......|..|+++++|++|++++|
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~--~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n 91 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPN--STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTAN 91 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCT--TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred CCEEECCCCCCCCCCCCCCC--CCCEEECCCCCCCCCCHHHHCCCCCCEEEECCCCCCCEECHHHCCCCCCCCEEECCCC
T ss_conf 72377777980628677898--6758981587347179667256766528978898355248511368433676448898
Q ss_pred CCCCCCCCCCCCCCCCCCCCC
Q ss_conf 432445647623534223463
Q 000594 651 YQLCELPLGMKELKCLRTLTN 671 (1402)
Q Consensus 651 ~~l~~~p~~i~~L~~L~~L~~ 671 (1402)
......|..|+.+++|++|+.
T Consensus 92 ~l~~~~~~~~~~l~~L~~L~L 112 (606)
T 3t6q_A 92 PLIFMAETALSGPKALKHLFF 112 (606)
T ss_dssp CCSEECTTTTSSCTTCCEEEC
T ss_pred CCCCCCHHHHCCCCCCCEEEC
T ss_conf 565458655234421537652
Done!