Query 000596
Match_columns 1400
No_of_seqs 205 out of 1695
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 15:54:27 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000596.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_370-374//hhsearch_pdb/000596hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcs_A TNF receptor-associated 1.0 1 1 181.2 7.8 139 1-160 5-145 (170)
2 3knv_A TNF receptor-associated 1.0 1 1 146.5 4.0 111 2-122 18-131 (141)
3 3hct_A TNF receptor-associated 1.0 1 1 136.6 7.8 103 2-123 6-109 (118)
4 1rmd_A RAG1; V(D)J recombinati 1.0 1 1 126.5 2.5 97 12-123 18-115 (116)
5 2c2l_A CHIP, carboxy terminus 1.0 1 1 99.4 5.8 67 12-92 203-270 (281)
6 4ayc_A E3 ubiquitin-protein li 1.0 1 1 96.6 2.8 53 13-67 49-101 (138)
7 2ckl_B Ubiquitin ligase protei 1.0 1 1 95.1 3.0 53 12-66 49-103 (165)
8 1z6u_A NP95-like ring finger p 1.0 1 1 94.3 2.4 54 11-66 72-126 (150)
9 2kr4_A Ubiquitin conjugation f 1.0 1 1 94.0 4.8 56 12-69 9-64 (85)
10 2kre_A Ubiquitin conjugation f 1.0 1 1 93.8 4.9 69 11-93 23-91 (100)
No 1
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=181.16 Aligned_cols=139 Identities=26% Similarity=0.577 Sum_probs=123.3
Q ss_pred CCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCCHHHHCCCCCCH
Q ss_conf 98870001013499982011568667778997783799812664299998219-99999884443343011102353311
Q 000596 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKVVLSSAVVPL 79 (1400)
Q Consensus 1 MGFD~e~Il~LeeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss-~sCPiCRk~ItekdLkliv~eaIFpl 79 (1400)
+||+.++ ++.++++|.|+||++++ .+|+++.|||+||..||.+|+... ..||+||..+...++. +
T Consensus 5 ~g~~~~~---~~~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~--------~- 70 (170)
T 3hcs_A 5 QGYDVEF---DPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF--------P- 70 (170)
T ss_dssp CCBCSEE---SSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE--------E-
T ss_pred CCCCHHH---CCCCCCCCCCCCCCHHH--CCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHHH--------H-
T ss_conf 9998210---13799988997879265--59277878988779999999975799999986575344423--------4-
Q ss_pred HHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHH-HHCCCCCCCCCCC
Q ss_conf 222467885402335314568999851430454111268899897541277551102065589998-3089999989999
Q 000596 80 VESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQVQEHA-QNCPGVQPQASQP 158 (1400)
Q Consensus 80 iesNK~LeKeIekLkVkCpnak~GCQw~g~LkELksHlksCey~~RlVkCp~CgsqI~RkeLQeHL-qeCPk~PVsCPns 158 (1400)
+..+++.+.++.|+|+|. ||.|.+.+.+++.|++.|.|. ++.|+.|+..+.+.++.+|+ ..|+.+.+.|+.+
T Consensus 71 ---~~~~~~~i~~l~v~C~n~--GC~~~~~~~~l~~H~~~C~~~--~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C 143 (170)
T 3hcs_A 71 ---DNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFA--LMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNC 143 (170)
T ss_dssp ---CHHHHHHHHTSEEECCST--TCCCEEEGGGHHHHHTTCTTS--EEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTT
T ss_pred ---HHHHHHHHHHCCCCCCCC--CCCCEECHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCC
T ss_conf ---578888774024679987--778452286799998569942--3689977868888899877361289977079899
Q ss_pred CC
Q ss_conf 78
Q 000596 159 EG 160 (1400)
Q Consensus 159 ~~ 160 (1400)
..
T Consensus 144 ~~ 145 (170)
T 3hcs_A 144 AA 145 (170)
T ss_dssp CC
T ss_pred CC
T ss_conf 97
No 2
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.53 Aligned_cols=111 Identities=29% Similarity=0.621 Sum_probs=92.5
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCH-HHHCCCCCCH
Q ss_conf 88700010134999820115686677789977837998126642999982199-999988444334301-1102353311
Q 000596 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSK-VVLSSAVVPL 79 (1400)
Q Consensus 2 GFD~e~Il~LeeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~-sCPiCRk~ItekdLk-liv~eaIFpl 79 (1400)
||+.+++. +.++++|.|+||++++ .+|+++.|||+||..||.+|+.... .||+||..+...+.. ++....+|+
T Consensus 18 g~~~~~~~--~~l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~- 92 (141)
T 3knv_A 18 GFSKTLLG--TKLEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFP- 92 (141)
T ss_dssp SBCGGGTG--GGCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEE-
T ss_pred CCCHHHHH--CCCCCCCCCCCCCHHH--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCC-
T ss_conf 86055540--1688585998889143--095888999900789999999628998999898166454212242654214-
Q ss_pred HHHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCC-CCCCCCC
Q ss_conf 222467885402335314568999851430454111-2688998
Q 000596 80 VESNKALAETIGKITVHCLFHRSGCTWQGPLSECTS-HCSGCAF 122 (1400)
Q Consensus 80 iesNK~LeKeIekLkVkCpnak~GCQw~g~LkELks-HlksCey 122 (1400)
++.++++|..+.|+|+| .||.|.+.+.+++. |++.|..
T Consensus 93 ---d~~~~~~i~~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~ 131 (141)
T 3knv_A 93 ---DNAARREVESLPAVCPS--DGCTWKGTLKEYESCHEGRCPL 131 (141)
T ss_dssp ---CHHHHHHHHTSEEECCS--TTCCCEEEHHHHHHHTTTCCHH
T ss_pred ---CHHHHHHHCCCCCCCCC--CCCCCEEEHHHHHHHHHHHHHH
T ss_conf ---69999997260461599--9998886789989999998688
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=1.00 E-value=1 Score=136.63 Aligned_cols=103 Identities=29% Similarity=0.632 Sum_probs=89.7
Q ss_pred CCCCHHHCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCCCCHHHHCCCCCCHH
Q ss_conf 88700010134999820115686677789977837998126642999982199-99998844433430111023533112
Q 000596 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSKVVLSSAVVPLV 80 (1400)
Q Consensus 2 GFD~e~Il~LeeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~-sCPiCRk~ItekdLkliv~eaIFpli 80 (1400)
||+.+ +++.+.+++.|+||++++ .+|+.+.|||+||..||.+|+.... .||+||..+...++. +
T Consensus 6 g~~~~---~~~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~--------~-- 70 (118)
T 3hct_A 6 GYDVE---FDPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQLF--------P-- 70 (118)
T ss_dssp CBCSC---BSSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGCE--------E--
T ss_pred CCCHH---HCCCCCCCCCCCCCCHHH--CCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHCC--------C--
T ss_conf 98832---123799997997589334--69088884796049999999964899889988884888623--------4--
Q ss_pred HHHHHHHHHHCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 2246788540233531456899985143045411126889989
Q 000596 81 ESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG 123 (1400)
Q Consensus 81 esNK~LeKeIekLkVkCpnak~GCQw~g~LkELksHlksCey~ 123 (1400)
+..+++.+..+.|+|.|. ||.|.+.+.++++|++.|.+.
T Consensus 71 --~~~l~~~i~~l~v~C~n~--gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 71 --DNFAKREILSLMVKCPNE--GCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp --CHHHHHHHHTSEEECSST--TCCCEEEGGGSGGGTSSSCC-
T ss_pred --CHHHHHHHCCCEEECCCC--CCCCEEEEHHHHHHHHHCHHH
T ss_conf --799999980663278999--898987507999999976330
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=1.00 E-value=1 Score=126.54 Aligned_cols=97 Identities=19% Similarity=0.478 Sum_probs=83.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 49998201156866777899778379981266429999821-99999988444334301110235331122246788540
Q 000596 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETI 90 (1400)
Q Consensus 12 eeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLks-s~sCPiCRk~ItekdLkliv~eaIFpliesNK~LeKeI 90 (1400)
..+.+++.|+||++++ .+|+.+.|||+||..||.+|+.. ...||+||..+...++. ..++.+.+.+
T Consensus 18 ~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~-----------~~~~~l~~~i 84 (116)
T 1rmd_A 18 AHFVKSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE-----------SPVKSFLNIL 84 (116)
T ss_dssp HHHHHHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB-----------CCCHHHHHHH
T ss_pred HHCCCCCCCCCCCCHH--CCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCC-----------CCHHHHHHHH
T ss_conf 7524799987789076--19477579884309999999948809689998877986535-----------6499999999
Q ss_pred CCEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 233531456899985143045411126889989
Q 000596 91 GKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG 123 (1400)
Q Consensus 91 ekLkVkCpnak~GCQw~g~LkELksHlksCey~ 123 (1400)
..+.++|++. ||.|.+.+.+++.|+..|.+.
T Consensus 85 ~~l~v~C~~~--gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 85 NSLMVKCPAQ--DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp HHCEEECCST--TCCCEEEHHHHHHHHHTSCCC
T ss_pred HHHCCCCCCC--CCCCHHHHHHHHHHHHHHHCC
T ss_conf 9730879989--995332286899999873126
No 5
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=99.43 Aligned_cols=67 Identities=15% Similarity=0.129 Sum_probs=53.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCC-CCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 499982011568667778997783799812664299998219-9999988444334301110235331122246788540
Q 000596 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETI 90 (1400)
Q Consensus 12 eeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss-~sCPiCRk~ItekdLkliv~eaIFpliesNK~LeKeI 90 (1400)
..+.+.|.|+||.+++ .+||++.|||+||+.||..|+..+ ..||+|+..++..++. + |..+++.|
T Consensus 203 ~~~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~--------~----n~~l~~~i 268 (281)
T 2c2l_A 203 RDIPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI--------P----NLAMKEVI 268 (281)
T ss_dssp CCCCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE--------E----CHHHHHHH
T ss_pred CCCCCCCCCCCCCCHH--CCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCC--------C----CHHHHHHH
T ss_conf 8999661792738871--38859999897779999999987879996978999521086--------1----69999999
Q ss_pred CC
Q ss_conf 23
Q 000596 91 GK 92 (1400)
Q Consensus 91 ek 92 (1400)
..
T Consensus 269 ~~ 270 (281)
T 2c2l_A 269 DA 270 (281)
T ss_dssp HH
T ss_pred HH
T ss_conf 99
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=96.63 Aligned_cols=53 Identities=23% Similarity=0.504 Sum_probs=46.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
Q ss_conf 9998201156866777899778379981266429999821999999884443343
Q 000596 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEAD 67 (1400)
Q Consensus 13 eLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~sCPiCRk~Itekd 67 (1400)
.+.+++.|+||++.+ .+|+.+.|||+||..||..|+.....||+||..+....
T Consensus 49 ~~~~~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~ 101 (138)
T 4ayc_A 49 VLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKT 101 (138)
T ss_dssp HHHHHSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEE
T ss_pred HCCCCCCCCCCCCCC--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 561159975627232--79667889998469999999976996999998278899
No 7
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=95.09 Aligned_cols=53 Identities=23% Similarity=0.688 Sum_probs=46.3
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHC-CCCCCCCCCCCCCC
Q ss_conf 499982011568667778997783-79981266429999821-99999988444334
Q 000596 12 QSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT-TQACPYDGYLVTEA 66 (1400)
Q Consensus 12 eeLeeeLiCPICkeVL~PkDPVqT-sCGHiFCksCIekiLks-s~sCPiCRk~Itek 66 (1400)
+.+.+++.|+||++++ .+|+.+ .|||+||..||.+|+.. ...||+||..+...
T Consensus 49 ~~~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 103 (165)
T 2ckl_B 49 RSLHSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK 103 (165)
T ss_dssp -CCHHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred HHCCCCCCCCCCCHHH--HCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 2079999996269276--393884899896289999999986829799999807885
No 8
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=94.31 Aligned_cols=54 Identities=24% Similarity=0.581 Sum_probs=47.4
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCC-CCCCCCCCCCCC
Q ss_conf 34999820115686677789977837998126642999982199-999988444334
Q 000596 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEA 66 (1400)
Q Consensus 11 LeeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~-sCPiCRk~Itek 66 (1400)
++.+.+++.|+||++++ .+|+++.|||+||..||..|+.... .||+||..+...
T Consensus 72 ~~~l~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHHHHHHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred HHHCCCCCEEECCCHHH--CCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 87074279900579042--59888289990319999999983989599988357887
No 9
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=1.00 E-value=1 Score=93.99 Aligned_cols=56 Identities=11% Similarity=0.204 Sum_probs=50.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCH
Q ss_conf 4999820115686677789977837998126642999982199999988444334301
Q 000596 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSK 69 (1400)
Q Consensus 12 eeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~sCPiCRk~ItekdLk 69 (1400)
..+.++|.|+||+++| ++||++.|||+||+.||.+|+....+||+|+..+...++.
T Consensus 9 ~~~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~l~ 64 (85)
T 2kr4_A 9 SDAPDEFRDPLMDTLM--TDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTESMLE 64 (85)
T ss_dssp TTCCTTTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGGGCE
T ss_pred HCCCHHEECCCCCCHH--CCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCC
T ss_conf 3694420981618660--3886999999999899999995489898986998857451
No 10
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=93.79 Aligned_cols=69 Identities=14% Similarity=0.209 Sum_probs=56.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHCCCCCCHHHHHHHHHHHH
Q ss_conf 34999820115686677789977837998126642999982199999988444334301110235331122246788540
Q 000596 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKVVLSSAVVPLVESNKALAETI 90 (1400)
Q Consensus 11 LeeLeeeLiCPICkeVL~PkDPVqTsCGHiFCksCIekiLkss~sCPiCRk~ItekdLkliv~eaIFpliesNK~LeKeI 90 (1400)
...+.++|.|+||+++| ++||++.|||+||+.||..|+....+||+|+..++..++. + |..+++.|
T Consensus 23 ~~~~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~--------p----n~~Lk~~I 88 (100)
T 2kre_A 23 YSDAPDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE--------P----VPELKEQI 88 (100)
T ss_dssp CSSCSTTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE--------E----CHHHHHHH
T ss_pred HCCCCHHHCCCCCCCCC--CCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCE--------E----CHHHHHHH
T ss_conf 01580760881715725--5986999999886699999997389899988988856362--------8----79999999
Q ss_pred CCE
Q ss_conf 233
Q 000596 91 GKI 93 (1400)
Q Consensus 91 ekL 93 (1400)
...
T Consensus 89 ~~~ 91 (100)
T 2kre_A 89 QAW 91 (100)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
Done!