Query 000599
Match_columns 1400
No_of_seqs 349 out of 1074
Neff 7.7
Searched_HMMs 46136
Date Mon Apr 1 20:29:25 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000599.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000599hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2956 CLIP-associating prote 100.0 9.6E-48 2.1E-52 433.6 34.7 506 790-1397 2-516 (516)
2 KOG1820 Microtubule-associated 99.9 7.3E-24 1.6E-28 265.2 42.1 739 7-982 13-775 (815)
3 PF12348 CLASP_N: CLASP N term 99.9 4.6E-24 9.9E-29 239.1 18.0 199 283-482 2-228 (228)
4 PF12348 CLASP_N: CLASP N term 99.8 3.1E-19 6.7E-24 200.1 19.1 201 8-211 16-227 (228)
5 KOG1820 Microtubule-associated 99.8 5.5E-18 1.2E-22 212.8 30.0 429 2-439 256-727 (815)
6 KOG1824 TATA-binding protein-i 99.7 3.4E-10 7.3E-15 138.2 62.6 404 3-463 9-490 (1233)
7 KOG1242 Protein containing ada 99.6 7.7E-15 1.7E-19 174.7 18.3 204 1168-1376 134-342 (569)
8 KOG2171 Karyopherin (importin) 99.6 7.1E-08 1.5E-12 122.5 72.4 382 38-464 115-531 (1075)
9 KOG2171 Karyopherin (importin) 99.5 7.5E-11 1.6E-15 148.8 37.5 471 1-484 350-963 (1075)
10 KOG1824 TATA-binding protein-i 99.4 8.7E-07 1.9E-11 109.3 65.0 365 42-464 128-535 (1233)
11 KOG2023 Nuclear transport rece 99.2 7.8E-07 1.7E-11 106.2 43.7 379 4-402 95-508 (885)
12 KOG1242 Protein containing ada 99.2 2E-08 4.3E-13 120.7 30.2 359 2-463 137-507 (569)
13 PLN03200 cellulose synthase-in 99.1 5E-05 1.1E-09 104.6 64.2 406 784-1388 457-885 (2102)
14 KOG1241 Karyopherin (importin) 99.1 2.8E-08 6.1E-13 120.2 28.7 377 1-415 219-648 (859)
15 KOG2933 Uncharacterized conser 99.1 2E-09 4.3E-14 118.8 16.5 174 286-464 90-263 (334)
16 KOG0212 Uncharacterized conser 98.9 3E-06 6.5E-11 100.0 31.7 389 3-484 4-420 (675)
17 KOG2023 Nuclear transport rece 98.8 3.6E-06 7.7E-11 100.7 30.1 423 2-483 218-737 (885)
18 KOG1248 Uncharacterized conser 98.8 0.0033 7.2E-08 81.2 63.1 160 1222-1386 748-922 (1176)
19 KOG2933 Uncharacterized conser 98.7 3.9E-07 8.5E-12 101.0 15.6 182 3-186 92-275 (334)
20 KOG0915 Uncharacterized conser 98.5 5.1E-05 1.1E-09 98.6 31.0 386 783-1342 967-1368(1702)
21 PTZ00429 beta-adaptin; Provisi 98.5 0.00072 1.6E-08 87.2 40.4 295 43-412 107-446 (746)
22 PF01602 Adaptin_N: Adaptin N 98.5 3.9E-05 8.4E-10 97.3 28.9 354 3-474 118-486 (526)
23 KOG2956 CLIP-associating prote 98.5 1.4E-05 3.1E-10 93.1 21.4 214 3-219 290-507 (516)
24 KOG0212 Uncharacterized conser 98.4 0.00012 2.7E-09 86.8 28.2 306 39-433 165-478 (675)
25 PRK13800 putative oxidoreducta 98.3 7.6E-05 1.6E-09 100.0 26.2 271 45-431 625-895 (897)
26 PTZ00429 beta-adaptin; Provisi 98.3 0.0013 2.9E-08 84.7 36.1 366 2-439 35-401 (746)
27 KOG0213 Splicing factor 3b, su 98.3 0.028 6E-07 69.1 56.8 144 1225-1376 1008-1159(1172)
28 KOG0213 Splicing factor 3b, su 98.2 0.0011 2.4E-08 80.7 30.0 369 3-439 720-1146(1172)
29 KOG0915 Uncharacterized conser 98.2 0.00038 8.3E-09 90.9 27.0 383 4-460 961-1367(1702)
30 KOG1241 Karyopherin (importin) 98.2 0.0025 5.3E-08 78.6 32.4 398 4-463 368-794 (859)
31 PRK13800 putative oxidoreducta 98.2 0.00042 9.1E-09 93.0 29.0 140 1184-1355 756-895 (897)
32 PF01602 Adaptin_N: Adaptin N 98.2 0.00062 1.3E-08 86.4 29.3 352 3-439 8-373 (526)
33 PLN03200 cellulose synthase-in 98.1 0.0019 4.1E-08 89.7 34.0 381 2-473 449-858 (2102)
34 COG5215 KAP95 Karyopherin (imp 98.1 0.0037 7.9E-08 74.5 30.3 417 2-459 224-690 (858)
35 PF12460 MMS19_C: RNAPII trans 98.1 0.00021 4.5E-09 87.6 20.9 205 1168-1379 190-414 (415)
36 PRK09687 putative lyase; Provi 98.0 0.0018 4E-08 74.7 26.1 260 76-430 17-277 (280)
37 COG5181 HSH155 U2 snRNP splice 97.8 0.0051 1.1E-07 73.8 25.9 162 288-464 692-856 (975)
38 PRK09687 putative lyase; Provi 97.8 0.00029 6.3E-09 81.3 15.8 179 1169-1376 55-236 (280)
39 KOG0211 Protein phosphatase 2A 97.8 0.017 3.7E-07 74.1 31.4 378 49-464 245-650 (759)
40 KOG1061 Vesicle coat complex A 97.8 0.0027 5.9E-08 79.0 22.9 366 4-485 126-503 (734)
41 COG5215 KAP95 Karyopherin (imp 97.7 0.024 5.1E-07 67.9 28.8 351 11-461 340-709 (858)
42 PF12755 Vac14_Fab1_bd: Vacuol 97.7 0.00038 8.3E-09 66.6 10.9 93 1186-1279 2-94 (97)
43 PF10274 ParcG: Parkin co-regu 97.6 0.00025 5.3E-09 75.0 10.0 101 1282-1386 32-135 (183)
44 KOG1060 Vesicle coat complex A 97.6 0.15 3.2E-06 63.8 34.3 170 2-188 38-209 (968)
45 PF05004 IFRD: Interferon-rela 97.6 0.015 3.2E-07 68.2 24.4 192 1169-1363 45-261 (309)
46 PF10508 Proteasom_PSMB: Prote 97.6 0.18 4E-06 63.4 35.6 160 40-203 76-244 (503)
47 PF12755 Vac14_Fab1_bd: Vacuol 97.5 0.00057 1.2E-08 65.4 9.8 88 1229-1352 3-90 (97)
48 KOG0166 Karyopherin (importin) 97.5 0.036 7.8E-07 67.6 26.4 195 2-198 69-276 (514)
49 COG5181 HSH155 U2 snRNP splice 97.4 0.69 1.5E-05 56.4 48.7 180 7-199 176-357 (975)
50 KOG0211 Protein phosphatase 2A 97.3 0.026 5.7E-07 72.5 24.3 137 286-429 519-658 (759)
51 PF10508 Proteasom_PSMB: Prote 97.3 0.23 5.1E-06 62.5 31.6 337 3-439 7-370 (503)
52 PF05004 IFRD: Interferon-rela 97.2 0.015 3.3E-07 68.0 19.2 189 2-191 46-260 (309)
53 KOG1060 Vesicle coat complex A 97.1 0.6 1.3E-05 58.7 31.5 164 772-968 39-208 (968)
54 KOG1248 Uncharacterized conser 97.1 0.019 4.2E-07 74.5 19.8 198 1184-1382 668-880 (1176)
55 KOG1062 Vesicle coat complex A 97.0 1.7 3.8E-05 55.0 35.0 181 2-187 145-378 (866)
56 KOG1062 Vesicle coat complex A 97.0 0.37 8E-06 60.7 28.2 152 3-169 74-229 (866)
57 PF12717 Cnd1: non-SMC mitotic 97.0 0.052 1.1E-06 58.5 18.8 161 1184-1355 2-175 (178)
58 KOG1967 DNA repair/transcripti 96.6 0.011 2.5E-07 74.4 11.7 151 1205-1355 859-1020(1030)
59 PF13513 HEAT_EZ: HEAT-like re 96.6 0.0027 5.9E-08 54.0 4.6 53 1302-1355 1-53 (55)
60 PF13646 HEAT_2: HEAT repeats; 96.6 0.015 3.2E-07 54.4 9.6 86 84-184 1-88 (88)
61 KOG0166 Karyopherin (importin) 96.5 0.032 7E-07 68.0 14.2 187 1169-1358 196-392 (514)
62 cd00020 ARM Armadillo/beta-cat 96.5 0.017 3.6E-07 57.1 10.1 104 1254-1358 8-119 (120)
63 cd00020 ARM Armadillo/beta-cat 96.5 0.009 1.9E-07 59.0 8.1 107 2-110 10-119 (120)
64 KOG1240 Protein kinase contain 96.5 0.34 7.4E-06 63.3 23.4 295 13-414 437-744 (1431)
65 KOG4524 Uncharacterized conser 96.5 0.47 1E-05 61.0 24.3 299 52-381 557-900 (1014)
66 PF02985 HEAT: HEAT repeat; I 96.4 0.0047 1E-07 45.9 4.0 30 160-189 1-30 (31)
67 PF02985 HEAT: HEAT repeat; I 96.4 0.0049 1.1E-07 45.8 4.1 30 1331-1360 1-30 (31)
68 KOG1240 Protein kinase contain 96.3 0.37 8E-06 63.0 22.6 278 98-440 439-730 (1431)
69 KOG1943 Beta-tubulin folding c 96.3 0.083 1.8E-06 68.2 16.6 211 1163-1376 206-475 (1133)
70 PF05804 KAP: Kinesin-associat 96.3 1.1 2.5E-05 57.8 27.0 337 42-436 291-650 (708)
71 KOG2160 Armadillo/beta-catenin 96.3 0.2 4.4E-06 58.1 18.2 178 1183-1362 96-285 (342)
72 PF13646 HEAT_2: HEAT repeats; 96.2 0.023 4.9E-07 53.2 8.9 85 1255-1354 1-87 (88)
73 KOG1243 Protein kinase [Genera 96.2 0.036 7.9E-07 68.8 12.5 144 1225-1374 267-418 (690)
74 PF04118 Dopey_N: Dopey, N-ter 96.1 0.13 2.8E-06 59.9 15.9 210 773-992 55-273 (307)
75 PF12717 Cnd1: non-SMC mitotic 95.9 0.13 2.9E-06 55.3 14.0 125 1225-1353 1-133 (178)
76 KOG0168 Putative ubiquitin fus 95.9 0.26 5.6E-06 62.2 17.5 182 1-188 169-364 (1051)
77 PF13513 HEAT_EZ: HEAT-like re 95.8 0.0073 1.6E-07 51.4 3.0 55 132-186 1-55 (55)
78 KOG1967 DNA repair/transcripti 95.8 0.07 1.5E-06 67.7 12.4 141 1168-1311 868-1018(1030)
79 PF14500 MMS19_N: Dos2-interac 95.7 1.9 4E-05 49.5 22.8 195 2-199 2-249 (262)
80 cd03567 VHS_GGA VHS domain fam 95.7 0.12 2.5E-06 53.1 11.7 111 781-902 13-131 (139)
81 PLN03076 ARF guanine nucleotid 95.7 5 0.00011 57.0 30.6 320 4-383 1142-1515(1780)
82 PF12231 Rif1_N: Rap1-interact 95.6 0.81 1.8E-05 55.3 20.6 198 1185-1388 8-238 (372)
83 PF13251 DUF4042: Domain of un 95.5 0.093 2E-06 56.3 10.7 133 1228-1360 2-175 (182)
84 COG5096 Vesicle coat complex, 95.5 0.25 5.3E-06 63.3 16.1 168 8-189 28-196 (757)
85 cd03568 VHS_STAM VHS domain fa 95.5 0.3 6.6E-06 50.5 13.8 108 284-402 3-113 (144)
86 KOG1058 Vesicle coat complex C 95.4 3 6.5E-05 52.5 23.9 93 295-400 327-426 (948)
87 cd03568 VHS_STAM VHS domain fa 95.3 0.18 3.9E-06 52.2 11.5 107 781-898 12-121 (144)
88 PF04118 Dopey_N: Dopey, N-ter 95.2 0.4 8.7E-06 55.8 15.5 176 15-193 71-259 (307)
89 PF00790 VHS: VHS domain; Int 95.2 0.14 3.1E-06 52.8 10.5 107 781-898 17-129 (140)
90 KOG1059 Vesicle coat complex A 95.2 0.6 1.3E-05 58.1 17.2 177 1166-1355 143-361 (877)
91 PF12231 Rif1_N: Rap1-interact 95.1 10 0.00023 45.9 27.9 300 7-340 1-329 (372)
92 KOG2025 Chromosome condensatio 95.1 0.47 1E-05 58.9 16.0 178 1184-1377 99-278 (892)
93 PF13251 DUF4042: Domain of un 95.1 0.55 1.2E-05 50.5 14.8 157 14-188 1-174 (182)
94 KOG2259 Uncharacterized conser 95.1 1.8 3.9E-05 53.7 20.4 279 116-464 197-502 (823)
95 COG5240 SEC21 Vesicle coat com 94.9 0.45 9.8E-06 57.5 14.5 65 1330-1400 526-595 (898)
96 cd03567 VHS_GGA VHS domain fam 94.7 1.1 2.4E-05 46.0 15.4 110 282-402 2-119 (139)
97 KOG0392 SNF2 family DNA-depend 94.7 0.51 1.1E-05 62.0 15.4 175 1186-1364 749-930 (1549)
98 COG5064 SRP1 Karyopherin (impo 94.4 5.3 0.00011 45.9 20.8 191 2-198 74-282 (526)
99 PF12460 MMS19_C: RNAPII trans 94.4 2 4.4E-05 52.8 19.7 192 3-199 193-405 (415)
100 PF00790 VHS: VHS domain; Int 94.4 1.6 3.4E-05 45.1 15.8 117 281-408 5-127 (140)
101 KOG1059 Vesicle coat complex A 94.3 21 0.00045 45.3 31.6 180 2-194 147-334 (877)
102 cd03569 VHS_Hrs_Vps27p VHS dom 94.3 1.2 2.7E-05 46.0 14.7 110 282-402 5-117 (142)
103 PF12719 Cnd3: Nuclear condens 94.2 0.49 1.1E-05 55.4 13.2 128 1231-1358 2-142 (298)
104 KOG2274 Predicted importin 9 [ 94.1 3.9 8.6E-05 52.6 21.0 158 1224-1390 585-762 (1005)
105 KOG1077 Vesicle coat complex A 94.1 22 0.00048 44.9 32.5 378 2-473 77-487 (938)
106 KOG4653 Uncharacterized conser 94.1 1.5 3.2E-05 56.0 17.2 201 1170-1384 730-943 (982)
107 cd03569 VHS_Hrs_Vps27p VHS dom 94.1 0.39 8.5E-06 49.6 10.6 105 782-897 17-124 (142)
108 PF04826 Arm_2: Armadillo-like 94.0 0.99 2.1E-05 51.4 14.4 169 4-178 59-252 (254)
109 cd03565 VHS_Tom1 VHS domain fa 93.9 0.34 7.4E-06 50.0 9.7 105 782-897 14-125 (141)
110 KOG2032 Uncharacterized conser 93.9 1.1 2.4E-05 53.9 14.8 194 1182-1377 229-435 (533)
111 COG5240 SEC21 Vesicle coat com 93.8 1.2 2.6E-05 54.0 15.0 172 7-186 311-553 (898)
112 cd03561 VHS VHS domain family; 93.7 0.44 9.6E-06 48.7 10.0 99 783-892 14-117 (133)
113 PF10274 ParcG: Parkin co-regu 93.6 0.62 1.4E-05 49.7 11.2 113 3-116 42-169 (183)
114 PF08167 RIX1: rRNA processing 93.5 1 2.2E-05 47.9 12.8 141 1209-1380 22-164 (165)
115 cd00197 VHS_ENTH_ANTH VHS, ENT 93.5 0.49 1.1E-05 47.0 9.9 98 782-886 9-114 (115)
116 COG5218 YCG1 Chromosome conden 93.3 2 4.4E-05 52.3 15.8 184 1208-1391 87-299 (885)
117 KOG1243 Protein kinase [Genera 93.3 0.66 1.4E-05 58.1 12.2 112 78-191 326-440 (690)
118 KOG2032 Uncharacterized conser 93.3 1.6 3.4E-05 52.7 14.7 178 784-968 228-415 (533)
119 PF11640 TAN: Telomere-length 93.2 1.2 2.5E-05 46.9 12.5 121 2-122 7-148 (155)
120 cd03572 ENTH_epsin_related ENT 93.2 0.49 1.1E-05 47.3 8.9 88 1190-1282 21-119 (122)
121 KOG2149 Uncharacterized conser 93.1 1.9 4.1E-05 51.1 15.0 117 1168-1288 59-176 (393)
122 COG1413 FOG: HEAT repeat [Ener 93.1 1.4 2.9E-05 52.6 14.6 153 2-190 46-211 (335)
123 KOG0392 SNF2 family DNA-depend 93.0 0.87 1.9E-05 60.0 13.1 157 1204-1363 71-241 (1549)
124 smart00288 VHS Domain present 93.0 1.9 4.1E-05 44.1 13.4 108 284-402 3-114 (133)
125 TIGR02270 conserved hypothetic 93.0 0.83 1.8E-05 55.7 12.6 115 1214-1354 88-202 (410)
126 smart00288 VHS Domain present 93.0 0.56 1.2E-05 48.0 9.4 102 783-895 14-119 (133)
127 TIGR02270 conserved hypothetic 92.9 1.5 3.2E-05 53.5 14.6 116 1216-1357 58-174 (410)
128 cd03565 VHS_Tom1 VHS domain fa 92.9 2.7 5.8E-05 43.5 14.3 108 284-402 4-118 (141)
129 KOG2259 Uncharacterized conser 92.7 0.9 2E-05 56.1 11.9 174 1170-1352 237-468 (823)
130 KOG0946 ER-Golgi vesicle-tethe 92.6 29 0.00063 44.5 24.5 169 2-191 25-198 (970)
131 PF08623 TIP120: TATA-binding 92.5 1.1 2.4E-05 47.4 11.0 118 1248-1367 4-156 (169)
132 PF14500 MMS19_N: Dos2-interac 92.5 4.3 9.3E-05 46.5 16.7 188 1185-1376 55-255 (262)
133 KOG0168 Putative ubiquitin fus 92.4 2.4 5.2E-05 54.0 15.3 173 1168-1342 168-392 (1051)
134 PLN03076 ARF guanine nucleotid 92.4 4.6 9.9E-05 57.4 19.7 196 1169-1367 1138-1384(1780)
135 KOG4653 Uncharacterized conser 92.3 4.6 0.0001 51.7 17.6 185 3-198 731-928 (982)
136 PF08167 RIX1: rRNA processing 92.3 3 6.5E-05 44.3 14.2 101 1184-1286 39-147 (165)
137 KOG1837 Uncharacterized conser 92.1 2.2 4.9E-05 57.7 15.4 183 1185-1369 1409-1621(1621)
138 KOG1058 Vesicle coat complex C 92.1 44 0.00096 42.7 28.0 82 102-189 73-164 (948)
139 KOG1020 Sister chromatid cohes 92.0 3.8 8.3E-05 55.4 17.2 149 1205-1359 809-960 (1692)
140 KOG1077 Vesicle coat complex A 92.0 11 0.00024 47.4 19.8 108 40-152 328-438 (938)
141 cd00197 VHS_ENTH_ANTH VHS, ENT 91.9 1.3 2.9E-05 43.9 10.4 103 2-109 2-113 (115)
142 KOG4535 HEAT and armadillo rep 91.8 3.5 7.5E-05 49.3 14.8 135 1185-1319 11-181 (728)
143 PF10521 DUF2454: Protein of u 91.8 4.5 9.8E-05 47.0 16.2 142 1201-1343 108-278 (282)
144 PF12719 Cnd3: Nuclear condens 91.7 2 4.3E-05 50.4 13.3 127 61-188 3-143 (298)
145 KOG2137 Protein kinase [Signal 91.7 9 0.0002 48.6 19.1 136 1247-1386 383-530 (700)
146 PF10363 DUF2435: Protein of u 91.7 0.68 1.5E-05 44.0 7.5 72 1294-1367 9-80 (92)
147 KOG4825 Component of synaptic 91.7 1.5 3.3E-05 51.5 11.6 215 4-219 398-632 (666)
148 KOG0803 Predicted E3 ubiquitin 91.6 4 8.8E-05 55.8 17.3 190 1168-1363 42-267 (1312)
149 PF04826 Arm_2: Armadillo-like 91.5 3.7 8E-05 46.8 14.6 187 1169-1364 14-210 (254)
150 KOG1525 Sister chromatid cohes 91.2 0.64 1.4E-05 63.1 9.3 206 1169-1384 261-499 (1266)
151 cd03561 VHS VHS domain family; 90.9 5.1 0.00011 40.9 13.7 108 285-403 4-116 (133)
152 PF10363 DUF2435: Protein of u 90.4 1.6 3.4E-05 41.6 8.7 86 2-96 6-91 (92)
153 PF05918 API5: Apoptosis inhib 90.4 2.6 5.6E-05 52.8 12.9 147 1185-1341 37-189 (556)
154 PF12830 Nipped-B_C: Sister ch 90.2 2.5 5.4E-05 45.9 11.4 84 1253-1340 8-93 (187)
155 KOG2149 Uncharacterized conser 90.2 2.1 4.5E-05 50.7 11.1 121 773-898 60-181 (393)
156 KOG2199 Signal transducing ada 90.1 4.5 9.8E-05 47.4 13.4 109 282-401 9-120 (462)
157 PF08064 UME: UME (NUC010) dom 89.9 1.5 3.3E-05 43.0 8.4 77 1300-1379 27-104 (107)
158 KOG1087 Cytosolic sorting prot 89.6 3.3 7.2E-05 50.8 12.8 105 285-400 5-113 (470)
159 KOG2025 Chromosome condensatio 89.5 16 0.00035 46.2 18.1 179 39-218 83-293 (892)
160 COG5096 Vesicle coat complex, 89.1 18 0.0004 47.0 19.2 164 1184-1360 33-196 (757)
161 KOG0414 Chromosome condensatio 88.7 1.1E+02 0.0023 41.5 29.7 104 86-191 316-431 (1251)
162 PF05918 API5: Apoptosis inhib 88.6 15 0.00033 46.2 17.6 140 41-189 59-204 (556)
163 PF05536 Neurochondrin: Neuroc 88.6 13 0.00027 47.4 17.5 183 1167-1354 5-208 (543)
164 COG5218 YCG1 Chromosome conden 88.5 14 0.00031 45.4 16.5 183 817-1000 91-297 (885)
165 KOG2160 Armadillo/beta-catenin 87.6 26 0.00057 41.2 17.6 178 9-188 93-282 (342)
166 KOG1991 Nuclear transport rece 87.5 17 0.00038 47.6 17.4 180 1188-1374 390-588 (1010)
167 COG1413 FOG: HEAT repeat [Ener 87.5 9.3 0.0002 45.4 14.9 88 1168-1279 44-132 (335)
168 PF10521 DUF2454: Protein of u 87.3 5.5 0.00012 46.3 12.3 131 1245-1375 111-269 (282)
169 PF12783 Sec7_N: Guanine nucle 87.3 2.4 5.3E-05 45.1 8.7 88 785-872 34-128 (168)
170 PF08161 NUC173: NUC173 domain 87.3 16 0.00036 40.0 15.1 82 1217-1298 5-86 (198)
171 PF12765 Cohesin_HEAT: HEAT re 87.2 0.68 1.5E-05 37.2 3.2 40 1311-1353 2-41 (42)
172 KOG0803 Predicted E3 ubiquitin 87.0 13 0.00029 51.1 16.9 188 2-191 44-266 (1312)
173 PF04388 Hamartin: Hamartin pr 86.8 8.1 0.00018 50.3 14.5 151 1216-1381 8-162 (668)
174 cd03572 ENTH_epsin_related ENT 86.5 3.4 7.4E-05 41.4 8.5 98 782-886 10-118 (122)
175 KOG2549 Transcription initiati 86.5 13 0.00028 45.8 14.8 175 280-464 203-398 (576)
176 PF12783 Sec7_N: Guanine nucle 86.3 18 0.00039 38.4 14.7 133 279-414 5-158 (168)
177 cd08050 TAF6 TATA Binding Prot 86.1 15 0.00032 44.0 15.3 149 279-463 173-323 (343)
178 KOG4535 HEAT and armadillo rep 85.9 3.6 7.8E-05 49.2 9.5 155 7-187 4-178 (728)
179 COG5095 TAF6 Transcription ini 85.5 22 0.00048 40.4 14.8 177 279-464 192-387 (450)
180 KOG4224 Armadillo repeat prote 85.0 4 8.7E-05 47.2 9.1 144 1215-1359 211-363 (550)
181 PF12830 Nipped-B_C: Sister ch 85.0 3.8 8.2E-05 44.5 8.8 78 116-198 7-84 (187)
182 KOG1078 Vesicle coat complex C 84.9 15 0.00034 46.8 14.7 172 8-187 291-531 (865)
183 KOG0413 Uncharacterized conser 84.4 93 0.002 41.0 20.9 106 345-464 947-1059(1529)
184 PF11698 V-ATPase_H_C: V-ATPas 84.3 3.7 8.1E-05 40.8 7.5 68 1289-1358 44-114 (119)
185 smart00802 UME Domain in UVSB 83.6 9.2 0.0002 37.5 9.8 90 1206-1297 5-98 (107)
186 KOG0946 ER-Golgi vesicle-tethe 83.5 21 0.00046 45.6 15.0 168 1167-1358 22-194 (970)
187 PF08064 UME: UME (NUC010) dom 82.7 11 0.00023 37.0 10.1 90 1206-1297 5-98 (107)
188 KOG2549 Transcription initiati 82.6 12 0.00025 46.2 12.1 161 1-198 209-377 (576)
189 KOG1087 Cytosolic sorting prot 82.3 5.9 0.00013 48.8 9.7 98 6-112 12-113 (470)
190 KOG0414 Chromosome condensatio 82.0 20 0.00043 48.0 14.5 155 53-216 935-1098(1251)
191 PF14664 RICTOR_N: Rapamycin-i 81.6 33 0.00072 41.5 15.7 142 1220-1369 34-184 (371)
192 PF14664 RICTOR_N: Rapamycin-i 81.4 22 0.00048 42.9 14.2 166 1185-1358 83-268 (371)
193 PF08161 NUC173: NUC173 domain 80.9 6.2 0.00013 43.2 8.4 108 344-455 15-123 (198)
194 PF08506 Cse1: Cse1; InterPro 80.8 1.4E+02 0.0031 36.2 23.2 95 296-394 266-370 (370)
195 PF12074 DUF3554: Domain of un 80.7 22 0.00047 42.5 13.9 150 1211-1363 60-239 (339)
196 KOG1061 Vesicle coat complex A 80.6 20 0.00043 46.0 13.5 175 4-191 18-192 (734)
197 KOG1943 Beta-tubulin folding c 80.6 27 0.00058 46.4 14.9 150 1210-1363 339-504 (1133)
198 KOG1949 Uncharacterized conser 80.0 43 0.00094 42.4 15.6 140 48-189 181-332 (1005)
199 PF03378 CAS_CSE1: CAS/CSE pro 79.7 21 0.00046 44.0 13.4 183 1168-1352 46-266 (435)
200 cd08050 TAF6 TATA Binding Prot 79.6 15 0.00032 44.1 11.7 135 2-142 181-335 (343)
201 KOG2137 Protein kinase [Signal 79.6 13 0.00028 47.3 11.5 129 1209-1339 386-521 (700)
202 COG5116 RPN2 26S proteasome re 79.5 12 0.00026 45.9 10.6 110 91-218 561-670 (926)
203 KOG2274 Predicted importin 9 [ 79.5 37 0.0008 44.3 15.3 171 1186-1360 507-690 (1005)
204 PF11865 DUF3385: Domain of un 79.4 14 0.0003 39.1 10.2 146 37-190 6-159 (160)
205 PF05804 KAP: Kinesin-associat 78.5 2.3E+02 0.005 37.3 29.7 136 3-143 294-437 (708)
206 KOG1991 Nuclear transport rece 78.5 2.5E+02 0.0054 37.6 33.6 412 2-464 92-562 (1010)
207 KOG4224 Armadillo repeat prote 78.2 5.7 0.00012 46.1 7.2 169 1185-1357 100-278 (550)
208 KOG2199 Signal transducing ada 77.7 15 0.00033 43.2 10.4 72 41-112 45-119 (462)
209 KOG4524 Uncharacterized conser 77.2 2.7E+02 0.0057 37.3 30.7 75 39-113 276-350 (1014)
210 PF03224 V-ATPase_H_N: V-ATPas 76.4 71 0.0015 37.7 16.3 191 1185-1382 72-290 (312)
211 COG5098 Chromosome condensatio 76.4 26 0.00056 44.1 12.3 32 159-190 386-417 (1128)
212 PF11640 TAN: Telomere-length 76.4 38 0.00082 35.6 12.5 109 1169-1280 6-135 (155)
213 PF08389 Xpo1: Exportin 1-like 76.4 19 0.00042 36.8 10.3 140 1187-1354 5-148 (148)
214 smart00638 LPD_N Lipoprotein N 76.3 36 0.00078 43.8 15.0 169 1168-1357 358-543 (574)
215 KOG3961 Uncharacterized conser 76.2 5 0.00011 43.4 5.6 85 1289-1374 115-202 (262)
216 COG5064 SRP1 Karyopherin (impo 75.9 6.2 0.00013 45.4 6.6 155 1203-1359 235-398 (526)
217 COG5098 Chromosome condensatio 75.3 67 0.0015 40.7 15.4 159 1175-1354 306-469 (1128)
218 KOG1525 Sister chromatid cohes 75.1 53 0.0012 45.5 16.1 70 1289-1359 260-329 (1266)
219 KOG4413 26S proteasome regulat 75.1 7.5 0.00016 44.5 6.9 94 1265-1358 55-156 (524)
220 KOG1020 Sister chromatid cohes 74.9 3.7E+02 0.008 37.8 31.5 111 76-191 810-924 (1692)
221 KOG4500 Rho/Rac GTPase guanine 74.9 1.4E+02 0.0031 36.0 17.3 187 2-189 268-476 (604)
222 KOG2062 26S proteasome regulat 74.9 57 0.0012 41.8 14.8 150 1216-1380 523-674 (929)
223 KOG1517 Guanine nucleotide bin 74.5 20 0.00044 47.2 11.2 165 1185-1360 485-672 (1387)
224 PF11865 DUF3385: Domain of un 74.3 16 0.00034 38.7 9.0 142 1209-1359 7-157 (160)
225 PF09324 DUF1981: Domain of un 74.0 12 0.00025 35.3 7.0 69 1211-1279 16-85 (86)
226 PF12333 Ipi1_N: Rix1 complex 74.0 10 0.00023 36.8 6.9 43 850-892 3-45 (102)
227 COG5095 TAF6 Transcription ini 73.9 83 0.0018 36.0 14.5 154 1229-1382 253-427 (450)
228 PF03224 V-ATPase_H_N: V-ATPas 73.5 37 0.00079 40.1 12.9 149 1168-1320 106-272 (312)
229 KOG1078 Vesicle coat complex C 73.3 3E+02 0.0064 36.0 29.9 160 788-971 115-276 (865)
230 KOG1949 Uncharacterized conser 73.2 37 0.00081 43.0 12.6 142 1216-1360 178-332 (1005)
231 smart00802 UME Domain in UVSB 72.8 19 0.00042 35.3 8.4 72 1301-1375 28-100 (107)
232 COG5593 Nucleic-acid-binding p 72.4 63 0.0014 39.6 13.9 96 859-988 229-327 (821)
233 PF12765 Cohesin_HEAT: HEAT re 71.8 5.9 0.00013 31.8 3.8 31 152-183 12-42 (42)
234 PF00514 Arm: Armadillo/beta-c 71.8 6.1 0.00013 31.2 4.0 29 159-187 12-40 (41)
235 PF01603 B56: Protein phosphat 71.7 13 0.00028 45.7 8.7 115 775-894 259-376 (409)
236 KOG0413 Uncharacterized conser 71.7 80 0.0017 41.5 15.2 179 4-187 477-684 (1529)
237 KOG1517 Guanine nucleotide bin 71.5 60 0.0013 43.1 14.3 153 1184-1356 571-729 (1387)
238 PF08713 DNA_alkylation: DNA a 70.5 21 0.00046 39.3 9.5 89 1274-1371 108-196 (213)
239 PF11864 DUF3384: Domain of un 70.4 65 0.0014 40.4 14.6 159 1194-1358 158-329 (464)
240 PF05536 Neurochondrin: Neuroc 69.0 69 0.0015 40.9 14.5 183 1-190 7-215 (543)
241 KOG2062 26S proteasome regulat 68.6 19 0.00042 45.7 9.0 132 48-192 526-657 (929)
242 PF01603 B56: Protein phosphat 68.5 97 0.0021 38.1 15.3 203 2-215 136-345 (409)
243 PF11701 UNC45-central: Myosin 68.4 48 0.001 34.9 11.0 129 52-185 16-156 (157)
244 PF12243 CTK3: CTD kinase subu 68.0 89 0.0019 32.2 12.3 92 857-953 7-100 (139)
245 cd00256 VATPase_H VATPase_H, r 67.7 1E+02 0.0023 37.9 15.0 178 1168-1358 229-424 (429)
246 KOG2759 Vacuolar H+-ATPase V1 67.1 74 0.0016 38.3 12.9 125 1224-1358 304-437 (442)
247 PF01347 Vitellogenin_N: Lipop 66.0 74 0.0016 41.4 14.5 168 1169-1357 397-587 (618)
248 PF14225 MOR2-PAG1_C: Cell mor 65.5 2.6E+02 0.0056 32.2 18.6 179 4-191 12-220 (262)
249 KOG4199 Uncharacterized conser 65.2 2.9E+02 0.0062 32.6 23.8 57 341-397 386-442 (461)
250 PF11841 DUF3361: Domain of un 64.0 62 0.0013 34.1 10.4 95 98-193 33-136 (160)
251 KOG1822 Uncharacterized conser 63.9 1.3E+02 0.0028 42.8 15.9 143 45-189 962-1128(2067)
252 PF00514 Arm: Armadillo/beta-c 63.9 13 0.00027 29.4 4.3 29 1330-1358 12-40 (41)
253 PF12612 TFCD_C: Tubulin foldi 63.8 97 0.0021 33.8 12.7 104 3-111 11-116 (193)
254 KOG2753 Uncharacterized conser 63.8 1.4E+02 0.0031 34.8 13.9 95 93-189 117-217 (378)
255 PF08506 Cse1: Cse1; InterPro 63.6 76 0.0016 38.4 12.8 125 55-183 225-370 (370)
256 COG5116 RPN2 26S proteasome re 62.5 38 0.00082 41.8 9.6 155 1171-1343 519-675 (926)
257 PF08713 DNA_alkylation: DNA a 62.3 97 0.0021 34.0 12.7 77 117-200 120-196 (213)
258 PF10441 Urb2: Urb2/Npa2 famil 62.0 2.2E+02 0.0047 31.8 15.4 164 830-995 1-212 (223)
259 KOG2081 Nuclear transport regu 61.7 2.4E+02 0.0053 35.4 16.3 147 41-191 291-460 (559)
260 cd00256 VATPase_H VATPase_H, r 61.1 2.5E+02 0.0055 34.6 16.6 134 1184-1317 115-258 (429)
261 PF12333 Ipi1_N: Rix1 complex 60.9 22 0.00048 34.5 6.2 64 1320-1390 1-65 (102)
262 PF11698 V-ATPase_H_C: V-ATPas 60.1 36 0.00077 34.0 7.5 29 160-188 87-115 (119)
263 PF01417 ENTH: ENTH domain; I 60.0 48 0.001 33.4 8.8 95 784-886 14-120 (125)
264 PF08623 TIP120: TATA-binding 59.8 19 0.00042 38.2 6.0 83 1300-1386 39-121 (169)
265 PF08767 CRM1_C: CRM1 C termin 59.6 1.2E+02 0.0027 35.8 13.5 165 1184-1357 134-314 (319)
266 PF08767 CRM1_C: CRM1 C termin 58.9 3.7E+02 0.008 31.9 19.4 135 1187-1321 44-198 (319)
267 KOG1851 Uncharacterized conser 58.8 1.8E+02 0.0039 40.7 15.6 72 117-189 1526-1599(1710)
268 KOG4413 26S proteasome regulat 58.3 2.5E+02 0.0055 32.7 14.5 167 1-173 84-271 (524)
269 PF08389 Xpo1: Exportin 1-like 57.6 51 0.0011 33.6 8.9 50 131-183 99-148 (148)
270 KOG1993 Nuclear transport rece 57.4 2.6E+02 0.0055 36.6 15.7 126 1170-1298 529-662 (978)
271 KOG1293 Proteins containing ar 57.0 1.8E+02 0.0039 37.1 14.2 141 4-147 382-533 (678)
272 PF10193 Telomere_reg-2: Telom 56.5 74 0.0016 31.6 9.2 94 1216-1313 7-111 (114)
273 PF08569 Mo25: Mo25-like; Int 54.9 1.2E+02 0.0025 36.3 12.1 99 1185-1283 179-284 (335)
274 COG5656 SXM1 Importin, protein 54.7 2.9E+02 0.0063 35.9 15.4 166 1207-1375 403-584 (970)
275 KOG0891 DNA-dependent protein 54.2 1.6E+02 0.0036 43.6 15.2 203 1169-1382 482-700 (2341)
276 KOG2022 Nuclear transport rece 54.0 2.4E+02 0.0051 37.3 14.9 111 299-414 481-593 (982)
277 PF14225 MOR2-PAG1_C: Cell mor 53.6 2.4E+02 0.0052 32.4 14.0 137 1169-1320 113-257 (262)
278 PF12422 Condensin2nSMC: Conde 52.6 3E+02 0.0065 28.9 13.5 31 158-188 118-148 (152)
279 smart00582 RPR domain present 52.2 27 0.00059 34.8 5.5 76 817-894 32-116 (121)
280 KOG2973 Uncharacterized conser 51.9 1E+02 0.0023 35.7 10.3 55 1213-1267 4-58 (353)
281 PF11701 UNC45-central: Myosin 51.8 91 0.002 32.8 9.6 129 1225-1356 18-156 (157)
282 PF04388 Hamartin: Hamartin pr 51.7 1.7E+02 0.0036 38.5 13.8 109 82-199 39-151 (668)
283 PF08569 Mo25: Mo25-like; Int 51.6 3.5E+02 0.0075 32.4 15.3 205 1169-1381 78-304 (335)
284 PF13001 Ecm29: Proteasome sta 51.2 1E+02 0.0022 39.0 11.6 95 73-170 14-113 (501)
285 PF12530 DUF3730: Protein of u 50.7 4.1E+02 0.0089 29.9 16.3 126 1222-1358 11-150 (234)
286 PF13001 Ecm29: Proteasome sta 49.6 1E+02 0.0022 39.0 11.3 118 1244-1362 14-137 (501)
287 PF11707 Npa1: Ribosome 60S bi 49.2 5.3E+02 0.011 30.7 17.0 97 47-144 62-184 (330)
288 PF14676 FANCI_S2: FANCI solen 49.0 2.3E+02 0.0049 30.0 11.9 116 1231-1355 37-157 (158)
289 PF03378 CAS_CSE1: CAS/CSE pro 48.9 1.4E+02 0.0031 37.0 12.0 167 1209-1381 156-349 (435)
290 cd06561 AlkD_like A new struct 48.8 2.9E+02 0.0062 29.8 13.4 79 1291-1375 108-186 (197)
291 PF02854 MIF4G: MIF4G domain; 48.2 3.7E+02 0.0081 28.7 16.6 166 36-218 13-182 (209)
292 KOG2081 Nuclear transport regu 47.5 3.4E+02 0.0074 34.2 14.4 155 1169-1335 389-554 (559)
293 PF06371 Drf_GBD: Diaphanous G 45.1 51 0.0011 35.4 6.7 89 99-187 93-186 (187)
294 PF08568 Kinetochor_Ybp2: Unch 44.7 2.4E+02 0.0052 36.9 13.9 77 1267-1343 80-178 (633)
295 PF12530 DUF3730: Protein of u 43.2 5.3E+02 0.011 29.0 18.4 168 1169-1344 39-217 (234)
296 PF10193 Telomere_reg-2: Telom 42.9 1.9E+02 0.0042 28.7 9.7 86 830-919 18-111 (114)
297 PF14228 MOR2-PAG1_mid: Cell m 42.7 1.1E+02 0.0023 42.3 10.3 84 100-187 488-571 (1120)
298 KOG4199 Uncharacterized conser 42.0 3.1E+02 0.0066 32.4 12.0 139 1216-1357 287-442 (461)
299 KOG0929 Guanine nucleotide exc 41.9 83 0.0018 44.0 9.0 136 1204-1366 1166-1305(1514)
300 KOG0567 HEAT repeat-containing 41.9 1.4E+02 0.0029 34.1 9.1 46 129-184 231-276 (289)
301 KOG1104 Nuclear cap-binding co 41.8 6.9E+02 0.015 32.7 16.2 179 1185-1387 25-206 (759)
302 PF14726 RTTN_N: Rotatin, an a 41.5 1.6E+02 0.0035 28.5 8.5 58 789-847 3-60 (98)
303 PF11707 Npa1: Ribosome 60S bi 41.2 2.7E+02 0.0058 33.2 12.4 109 80-198 25-153 (330)
304 KOG1293 Proteins containing ar 41.0 7.6E+02 0.016 31.9 16.1 134 1221-1356 386-530 (678)
305 PF14726 RTTN_N: Rotatin, an a 41.0 1.8E+02 0.0038 28.2 8.7 58 1185-1243 2-61 (98)
306 PF01417 ENTH: ENTH domain; I 40.7 1.7E+02 0.0037 29.4 9.2 97 8-110 12-120 (125)
307 PF11791 Aconitase_B_N: Aconit 39.8 70 0.0015 33.2 6.0 117 1253-1384 22-149 (154)
308 PF12243 CTK3: CTD kinase subu 39.3 1.2E+02 0.0027 31.2 7.9 87 368-459 6-94 (139)
309 KOG2011 Sister chromatid cohes 39.3 93 0.002 42.0 8.6 121 1259-1379 293-422 (1048)
310 PF12612 TFCD_C: Tubulin foldi 38.7 2.8E+02 0.0062 30.1 11.3 106 1250-1361 4-118 (193)
311 KOG2229 Protein required for a 38.5 2.8E+02 0.006 34.5 11.5 93 95-188 33-129 (616)
312 PF14228 MOR2-PAG1_mid: Cell m 37.6 7.3E+02 0.016 34.6 16.7 70 1213-1283 504-573 (1120)
313 cd03562 CID CID (CTD-Interacti 37.2 1.1E+02 0.0024 30.1 7.1 75 816-890 36-111 (114)
314 KOG1837 Uncharacterized conser 36.5 9.6E+02 0.021 34.2 17.2 71 127-197 1550-1620(1621)
315 smart00185 ARM Armadillo/beta- 36.4 47 0.001 25.5 3.5 28 160-187 13-40 (41)
316 KOG2038 CAATT-binding transcri 36.1 2.9E+02 0.0064 35.9 11.6 115 1212-1330 304-422 (988)
317 KOG2213 Apoptosis inhibitor 5/ 35.0 4.4E+02 0.0096 31.8 12.2 80 1176-1260 14-106 (460)
318 PF00613 PI3Ka: Phosphoinositi 34.6 74 0.0016 34.5 5.7 75 1254-1335 46-120 (184)
319 PF12074 DUF3554: Domain of un 34.6 3.5E+02 0.0077 32.2 12.2 108 1237-1346 8-123 (339)
320 KOG0889 Histone acetyltransfer 34.4 1.4E+02 0.0029 45.3 9.5 113 1251-1363 982-1112(3550)
321 PF12397 U3snoRNP10: U3 small 34.2 2.8E+02 0.006 27.6 9.5 78 78-155 2-83 (121)
322 PF04078 Rcd1: Cell differenti 34.1 3.3E+02 0.0072 31.1 10.8 128 1225-1354 8-163 (262)
323 PF11841 DUF3361: Domain of un 34.1 4E+02 0.0087 28.2 10.7 120 1167-1287 11-136 (160)
324 KOG0891 DNA-dependent protein 34.0 9.5E+02 0.021 36.3 17.6 175 1185-1365 20-210 (2341)
325 smart00145 PI3Ka Phosphoinosit 34.0 1.3E+02 0.0029 32.6 7.5 75 1254-1335 45-119 (184)
326 PF11864 DUF3384: Domain of un 33.5 1E+03 0.023 29.7 27.2 167 278-456 170-351 (464)
327 KOG1822 Uncharacterized conser 33.4 6.5E+02 0.014 36.5 15.0 180 1170-1355 918-1123(2067)
328 PF11919 DUF3437: Domain of un 33.4 36 0.00077 32.3 2.7 79 1303-1383 4-82 (90)
329 KOG3961 Uncharacterized conser 33.4 1E+02 0.0023 33.7 6.4 84 3-87 118-204 (262)
330 PF14911 MMS22L_C: S-phase gen 31.7 3.8E+02 0.0083 32.4 11.4 106 1231-1341 230-348 (373)
331 KOG0889 Histone acetyltransfer 31.6 2.6E+02 0.0056 42.6 11.4 94 1246-1341 43-149 (3550)
332 PF06371 Drf_GBD: Diaphanous G 31.6 2.8E+02 0.006 29.6 9.8 26 84-109 160-185 (187)
333 smart00638 LPD_N Lipoprotein N 31.0 5.1E+02 0.011 33.3 13.7 97 1254-1358 394-508 (574)
334 cd00872 PI3Ka_I Phosphoinositi 30.7 1.4E+02 0.0031 31.9 7.0 78 1253-1337 39-116 (171)
335 KOG2011 Sister chromatid cohes 30.5 5.3E+02 0.012 35.3 13.3 160 16-185 262-432 (1048)
336 PF01347 Vitellogenin_N: Lipop 29.3 1.4E+03 0.029 29.7 21.4 42 386-430 576-617 (618)
337 KOG1048 Neural adherens juncti 29.0 6.9E+02 0.015 32.8 13.6 158 41-208 518-702 (717)
338 KOG4825 Component of synaptic 28.5 1.2E+03 0.025 28.7 14.5 144 296-439 404-559 (666)
339 KOG1992 Nuclear export recepto 28.3 2.7E+02 0.0059 36.5 9.8 202 1183-1385 374-603 (960)
340 cd00864 PI3Ka Phosphoinositide 27.9 2.4E+02 0.0052 29.6 8.0 76 1253-1335 39-114 (152)
341 PF11935 DUF3453: Domain of un 27.8 9.2E+02 0.02 27.2 15.8 74 50-150 2-75 (239)
342 KOG4500 Rho/Rac GTPase guanine 27.7 9.1E+02 0.02 29.6 13.2 142 4-148 320-476 (604)
343 COG5221 DOP1 Dopey and related 27.7 2.7E+02 0.0059 37.4 9.6 145 821-968 109-256 (1618)
344 PF02854 MIF4G: MIF4G domain; 27.2 7.8E+02 0.017 26.2 16.0 83 1301-1386 99-185 (209)
345 PLN03205 ATR interacting prote 26.5 4.5E+02 0.0098 31.5 10.3 143 1210-1353 321-510 (652)
346 PF08349 DUF1722: Protein of u 25.5 4.4E+02 0.0095 26.2 9.1 97 1190-1289 11-107 (117)
347 KOG2085 Serine/threonine prote 25.4 2.4E+02 0.0053 34.1 8.1 80 41-124 341-425 (457)
348 PF07159 DUF1394: Protein of u 25.1 3.3E+02 0.0072 31.9 9.1 113 18-135 18-137 (303)
349 PF04869 Uso1_p115_head: Uso1 24.8 3E+02 0.0065 32.5 8.9 166 12-191 51-234 (312)
350 smart00582 RPR domain present 24.7 2.8E+02 0.0061 27.4 7.7 80 1211-1290 31-117 (121)
351 PF08568 Kinetochor_Ybp2: Unch 24.6 1.4E+03 0.03 30.0 16.0 101 20-124 4-108 (633)
352 smart00543 MIF4G Middle domain 24.6 8.6E+02 0.019 25.8 17.1 81 130-219 91-174 (200)
353 smart00273 ENTH Epsin N-termin 24.2 3.7E+02 0.008 27.0 8.5 39 814-852 36-75 (127)
354 cd06561 AlkD_like A new struct 24.0 9E+02 0.02 25.8 15.7 71 125-200 112-182 (197)
355 KOG1222 Kinesin associated pro 23.9 1.4E+03 0.03 28.4 13.9 76 1284-1360 586-664 (791)
356 KOG1789 Endocytosis protein RM 23.8 5.7E+02 0.012 34.7 11.3 50 1289-1340 2089-2140(2235)
357 PF14663 RasGEF_N_2: Rapamycin 23.8 2.4E+02 0.0052 28.0 6.8 31 818-848 9-39 (115)
358 smart00185 ARM Armadillo/beta- 23.4 1.1E+02 0.0025 23.3 3.7 27 1331-1357 13-39 (41)
359 KOG0931 Predicted guanine nucl 23.2 5.4E+02 0.012 31.4 10.3 113 789-906 276-406 (627)
360 COG5537 IRR1 Cohesin [Cell div 22.8 1.1E+03 0.023 30.4 12.9 106 4-113 280-388 (740)
361 cd00869 PI3Ka_II Phosphoinosit 22.6 2E+02 0.0043 30.8 6.2 77 1253-1336 39-115 (169)
362 PF12030 DUF3517: Domain of un 22.0 1.4E+03 0.03 27.3 16.4 90 786-885 108-198 (337)
363 PF11838 ERAP1_C: ERAP1-like C 21.9 1.3E+03 0.028 26.8 15.4 166 789-995 37-211 (324)
364 cd00870 PI3Ka_III Phosphoinosi 21.9 2.4E+02 0.0053 30.0 6.8 77 1254-1337 47-123 (166)
365 KOG2085 Serine/threonine prote 21.7 1.9E+02 0.0042 34.8 6.4 74 815-888 339-415 (457)
366 PF10441 Urb2: Urb2/Npa2 famil 21.6 1.1E+03 0.025 26.1 16.4 170 1190-1377 8-205 (223)
367 KOG1993 Nuclear transport rece 21.2 1.9E+03 0.041 29.2 15.0 116 295-414 537-665 (978)
368 KOG2611 Neurochondrin/leucine- 21.1 1.7E+03 0.036 27.9 15.6 110 1171-1283 15-141 (698)
369 KOG2842 Interferon-related pro 20.7 7.4E+02 0.016 29.9 10.7 137 276-414 49-190 (427)
370 KOG1848 Uncharacterized conser 20.6 2.6E+03 0.056 29.9 21.4 327 5-397 848-1199(1610)
371 PF14961 BROMI: Broad-minded p 20.4 2.1E+02 0.0046 39.1 7.1 74 1168-1247 162-237 (1296)
372 KOG4346 Uncharacterized conser 20.4 5.2E+02 0.011 33.4 9.9 107 41-150 508-621 (849)
373 KOG2073 SAP family cell cycle 20.4 2.1E+03 0.045 29.2 16.0 82 105-199 149-236 (838)
374 KOG2038 CAATT-binding transcri 20.3 3.8E+02 0.0082 34.9 8.8 63 857-919 340-405 (988)
375 KOG1466 Translation initiation 20.2 7.5E+02 0.016 28.2 10.0 130 1-134 14-159 (313)
No 1
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=100.00 E-value=9.6e-48 Score=433.63 Aligned_cols=506 Identities=24% Similarity=0.343 Sum_probs=386.3
Q ss_pred HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhhC-
Q 000599 790 RVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI- 868 (1400)
Q Consensus 790 R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klg- 868 (1400)
..+|+..|..++..-.-.. .++..+.+.+.+-+.+.+-+... +++..++..+...+..|+..=+-.+|.|.|
T Consensus 2 k~~~~~~l~~~i~d~~~~~----~~~k~~~~~~~~~~~e~~~~~~l---~~~S~~~rt~~srls~w~~l~l~k~~~k~g~ 74 (516)
T KOG2956|consen 2 KREGIKNLNQIITDPNLCP----LEIKNIGDTLNRLLAEGNNTLVL---ETISIFVKTHYSRLSNWLKLALGKLFAKKGA 74 (516)
T ss_pred cchhhhhhhhhhcccccCh----HHHHHHhhhHHHhhhcccceeee---ehhHHHHHHhHHHHHHHHHHHHHHHHHHHHH
Confidence 3567777777776532221 36778888888888887776543 999999999999999999999999999998
Q ss_pred CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccC---CCchhHHHHHHHHHHHHhhhhcCCCCCCCcchHHHHHHhh
Q 000599 869 DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 945 (1400)
Q Consensus 869 D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~---~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i 945 (1400)
+....+.+..-.....+...|++-.|+. +|.++.+. ..||.|...++|++.++.+|. ..+...+....+.++.|+
T Consensus 75 ~~l~n~~~~~~~t~~~~l~~~~~t~q~~-~~~lm~d~i~~~~~ks~~~l~e~lt~~~~~y~-~~g~s~~t~~~~~s~rkm 152 (516)
T KOG2956|consen 75 EALPNVKKQISSTQKMILGAFDPTFQLK-VCELMCDPIHLMSPKSRVVLLEYLTRLLEEYP-ERGTSPNTKETKAAIRKM 152 (516)
T ss_pred HhhhhHHhhccchhhhHhhcCCcHHHHH-HHHHHhCHHHhcCCccccchhhhhhccccccc-ccCCCCCCCcchhhhhhc
Confidence 9999999999999999999999999999 99999875 479999999999999999874 444455678889999999
Q ss_pred cccccC-CCHH-HHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHHhhhcchhHHHHHHHhhhhhhhcccCCCC
Q 000599 946 TPLVHD-KNTK-LKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLKSSY 1023 (1400)
Q Consensus 946 ~~l~~d-ks~~-vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 1023 (1400)
.+|+.| +... +-......+.++|..+ -..|......|++.++++..+.++. +..++. .+
T Consensus 153 ~~~~~d~~~~~l~~~~v~s~l~~~~~~n-~a~fss~~d~l~p~~rD~~~~~~~~--------------n~~~~~----~~ 213 (516)
T KOG2956|consen 153 FPWMFDPRIENLLTPHVESSLCSLFALN-NADFSSLFDLLNPEKRDWAYDSLQS--------------NGIDNG----SP 213 (516)
T ss_pred cccccCchhhccccHHHHHHHHHHHHHH-hhchHhhhhccChhhhhhHHHHHHh--------------hCcCCC----CC
Confidence 999988 4433 4455566677777777 3358888888999999997665552 221110 11
Q ss_pred CCCCC-CCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccchhhcccccCCCCCCccchHHHhhhccCCCCcCCCc
Q 000599 1024 DPSDV-VGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADVSS 1102 (1400)
Q Consensus 1024 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~ 1102 (1400)
++... .+..+...+...+-........+.++. .++.+.. +
T Consensus 214 ~~~a~~e~~~~~~n~~~~~~~~P~~~~~~~~~~--------------------------~~~~~~~----~--------- 254 (516)
T KOG2956|consen 214 SPSAEKERFDSSNNKPSLPLSPPEEEKPGLGST--------------------------KVNPEEL----R--------- 254 (516)
T ss_pred CchhhhcccccccccccccCCChhhcccCCCcc--------------------------ccCcccc----c---------
Confidence 01000 000000000000000000000000000 0000000 0
Q ss_pred cccCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCcccCCCCCCccccccCCCCCCCCHHHHHHHhhcCCCC
Q 000599 1103 KTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGNDG 1182 (1400)
Q Consensus 1103 ~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~~ 1182 (1400)
. +.++.+... . ....+..+.++..+ .+.|+.+.|.++|++++.+.
T Consensus 255 ---~---------~n~~~~~~~--l-----~e~~~~~~~~~~~p--------------~~~~~~~~v~~~l~~~~g~e-- 299 (516)
T KOG2956|consen 255 ---L---------SNETERLSR--L-----EEYSTDDSMDQLTP--------------NSVDQSALVADLLKEISGSE-- 299 (516)
T ss_pred ---c---------ccchhhhhh--c-----hhhccCcchhhCCC--------------CCcchhHHHHHHHHhccCcc--
Confidence 0 000000000 0 00111111111111 12234456889999998883
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH
Q 000599 1183 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV 1261 (1400)
Q Consensus 1183 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~ 1261 (1400)
..++++.|+.+|..++.++++.+|++||++||..++++|.| .++.+++.||++|++||++|+.+|.+|+|+.++|+|++
T Consensus 300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Lea 379 (516)
T KOG2956|consen 300 RASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEA 379 (516)
T ss_pred chhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHH
Confidence 26899999999999999999999999999999999999999 77889999999999999999999999999999999999
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000599 1262 TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1341 (1400)
Q Consensus 1262 ~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d 1341 (1400)
++|++++|.+.|++++.+++..+.|.+||.+|+++|.+.++++.+.||||+++++++++.|+|...+|+|+|+++++|+.
T Consensus 380 a~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S 459 (516)
T KOG2956|consen 380 AKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDS 459 (516)
T ss_pred HhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcC
Confidence 99999999999999888888888999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHhh-hhcchhhhhhcHHHHHHHHHHHHhhhhcccCcccC
Q 000599 1342 QSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQLRLVTIYANRISQARTGTTID 1397 (1400)
Q Consensus 1342 ~~seVRkaAv~~lv~~~~~lg-e~~~p~l~~L~~s~~kll~~yi~r~~~~~~~~~~~ 1397 (1400)
+++.|||+||||||++|..+| ++|+|||..|+.+|++|||+||+|+++.++|+++|
T Consensus 460 ~SS~VRKtaVfCLVamv~~vG~~~mePhL~~Lt~sk~~LlqlYinRa~s~~s~a~~~ 516 (516)
T KOG2956|consen 460 TSSTVRKTAVFCLVAMVNRVGMEEMEPHLEQLTSSKLNLLQLYINRASSSSSGASSD 516 (516)
T ss_pred chHHhhhhHHHhHHHHHHHHhHHhhhhHhhhccHHHHHHHHHHHHHhhcccCCCCCC
Confidence 999999999999999999999 69999999999999999999999999999999875
No 2
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.94 E-value=7.3e-24 Score=265.21 Aligned_cols=739 Identities=15% Similarity=0.142 Sum_probs=433.9
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHH--HhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhH
Q 000599 7 LARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCC--LDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALV 84 (1400)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l--~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~il 84 (1400)
.+.++.|+.|.+++..+....+...... ......+.+.. ..+++..|+.| +
T Consensus 13 ~l~~~~w~~~~~~~~ql~~~~~~~~~~~-a~a~~~~~~~s~~~~l~~a~~~~l--------------------------~ 65 (815)
T KOG1820|consen 13 ELCSQSWKNRLEAWKQLLTDSNVGAQEQ-AAALRLLRDASAISALLNAKNIQL--------------------------L 65 (815)
T ss_pred hhhhhhhhhhHHHHHHHhhhcchhhhHh-HHHHHHHHHhhcchhhhhccceee--------------------------c
Confidence 3777889999999888877765432110 00011111111 12223333333 3
Q ss_pred HHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHH
Q 000599 85 PAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPI 164 (1400)
Q Consensus 85 p~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l 164 (1400)
+.....|-..+..+++...+++..+.+..+.+.+++.++. .+..|.|+.-...+..+...+..||....+. +.++|++
T Consensus 66 ~~~~~~l~~~~~~~~~~~~~~~~~i~~~~~~~~~~e~~~~-~~~~k~pk~~~~~~~~~~~lv~~~g~p~~~~-~~~~~~~ 143 (815)
T KOG1820|consen 66 SFGLKCLDSKRVNIRDTKTQSLLRIGKLEDIKEVVEAAKA-LLSFKSPKKIAAAVAAVLSLVEEFGKPKVPS-KAFIKHV 143 (815)
T ss_pred cchhhhcccccccccCcchhHHHHHHHhhhhHHHHHHHHh-hccccCchhHHHHHHHHHHHHHHhcCCCCcc-ccccccC
Confidence 3333333344555667777777777666667788888886 7899999999999999999999999988877 7888888
Q ss_pred HHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCC--CCCCCcchh---hhhcc
Q 000599 165 LQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSS--DGLPNTFAA---LEIKT 239 (1400)
Q Consensus 165 ~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~--~~~~~~~~~---~~~r~ 239 (1400)
-.++ +.+||.++..++++||+|.|..+..++.+ .-.+.++.++...+.+........ +-....+.. +..+.
T Consensus 144 ~~l~---D~nvr~~~~~l~v~i~r~~G~~~~~~~~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~e 219 (815)
T KOG1820|consen 144 GSLA---DKNVRSEASKLLVEIYRWTGDASKPLLFK-ASAPGLMGKLGSYQGKSMMSFFNEKRPLLKSQPQDESDPNVKE 219 (815)
T ss_pred cccc---ccccchhhcccchhhhhhcCCCcCcccch-hhhHHHHHHHHhhccccccccccccccccccccccccCCChhh
Confidence 7777 88899999999999999999988777651 223333333333322221111000 000000000 00000
Q ss_pred ccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcC---CCCCHHHHHHHHHHHHHHHhcC
Q 000599 240 ASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV---PDKDWSVRIAAMQRVEGLVLGG 316 (1400)
Q Consensus 240 ~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~---~~~dW~~R~~AL~~l~~ll~~~ 316 (1400)
....+.++.....+ .++.+...-+..|++ +.++++.+.|. .+++|++|.+||+.+..++...
T Consensus 220 ~~~~~~~~~~~~~~------~~~s~~d~~d~l~~~---------di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~ 284 (815)
T KOG1820|consen 220 QLEKPERGLQRSKS------GFTSPIDNFDLLPRV---------DILSKITKNLETEMLSKKWKDRKEALEELVAILEEA 284 (815)
T ss_pred cccccccccccccC------CCCCCccccccCchh---------hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhcc
Confidence 00011111110000 000000000123333 33677777774 5799999999999999999876
Q ss_pred CCCch-hHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHH
Q 000599 317 AADHP-CFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIK 395 (1400)
Q Consensus 317 ~~~~~-~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~ 395 (1400)
..++. .+ ...+...++...+|.|.+|+..|.++|..||..||..|.+|+..++|.||+.+++++..+++++..|++
T Consensus 285 ~~~~~~~~---~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d 361 (815)
T KOG1820|consen 285 KKEIVKGY---TGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSLLDRLKEKKSELRDALLKALD 361 (815)
T ss_pred ccccccCc---chHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchHHHHhhhccHHHHHHHHHHHH
Confidence 63332 22 345666778889999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChHH---HHHH---
Q 000599 396 TMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSER---SRRL--- 469 (1400)
Q Consensus 396 ~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e~---A~~l--- 469 (1400)
.|+..+++.++++.|.+++ .+|||++|.+|..|+...++..+....-...++.+.+.+.+.++|++++. |-..
T Consensus 362 ~~~ns~~l~~~~~~I~e~l-k~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~ 440 (815)
T KOG1820|consen 362 AILNSTPLSKMSEAILEAL-KGKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAA 440 (815)
T ss_pred HHHhcccHHHHHHHHHHHh-cCCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHH
Confidence 9999999999999999999 59999999999999999999998543445568899999999999999992 2222
Q ss_pred -HhhC-CHHHHHHHhhhcCCCccccCCCcccccCcccccccccccccCCCCCCccchhhcccccccCCCCCcCchhhhHH
Q 000599 470 -FSSF-DPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQ 547 (1400)
Q Consensus 470 -~~~l-~~~~qk~L~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 547 (1400)
+..+ +..+.+.|.+-.+. + .++. .++.+..
T Consensus 441 v~k~~Ge~~~~k~L~~~~~~-~---~~~~-~E~~~p~------------------------------------------- 472 (815)
T KOG1820|consen 441 VMKVHGEEVFKKLLKDLDKQ-D---IKPK-EEKLKPL------------------------------------------- 472 (815)
T ss_pred HHHHhhHHHHHHHHHhhccc-h---hhhh-hhhcccc-------------------------------------------
Confidence 2223 23344444442210 0 0000 0000000
Q ss_pred hhhhhhhcchhhhHHhhhhhhchhhHH-HhhhccccccCCCCCCccccccCCCCCCCCCCCCCCCCccCCCCCCCccccc
Q 000599 548 AKSLNKATERSLESVLNASKQKVSAIE-SMLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMV 626 (1400)
Q Consensus 548 ~k~~~~~~~rs~~~v~~a~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~s~~~~~~~p~s~~~~~~~~~~~~~~~~~s~~~ 626 (1400)
..+..+.+.+..++. -+..+. ...+ ..+.....+|..+.. .+|..+
T Consensus 473 ------------~~~~~~~~~~~~a~~~~~~~~~-----~~~~----~~~~~~~~~p~~~~a----~vps~~-------- 519 (815)
T KOG1820|consen 473 ------------LHFLAAPKEKSSAPDPQVEKLK-----KVVK----VGLSNFSGLPKNSAA----SVPSKL-------- 519 (815)
T ss_pred ------------ccccccCCCcCCCCCccccccc-----eecc----cccccCCCCCCCccc----cCCCcc--------
Confidence 000000000000000 000000 0000 000000000000000 000000
Q ss_pred cccccCCCCCCCCCCCCccchhhhhhccccCCCCCCCCCCccccCCCCCccccCCccccccccchhchhhhhhhhcCCCc
Q 000599 627 ESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPH 706 (1400)
Q Consensus 627 ~s~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~ 706 (1400)
.++.+ .|. .+ ..+..+.+..+.. +.
T Consensus 520 ss~~~------~~~--------------------~~---------~~~~~~~~~~~~~-------------~~------- 544 (815)
T KOG1820|consen 520 SSANS------SRK--------------------IP---------EAAEAPKLQLSLK-------------EQ------- 544 (815)
T ss_pred ccccc------ccC--------------------Cc---------chhhccccccccc-------------cc-------
Confidence 00000 000 00 0000000000000 00
Q ss_pred ccccccccccCCCCCCCCCCCCCCCcccccccccCCCCCcccccccccccccccCCCCccCCCCCChHHHhhcCCCCCCC
Q 000599 707 IDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSD 786 (1400)
Q Consensus 707 ~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~ 786 (1400)
+...++ +|-.+.+ .+.. ..++. ..-+.. -+...+.- .....|
T Consensus 545 ----~~~~~~----------------~r~~~p~-----~~~~---~~~~~-------~~~~~~--~~~~~~~~-~~~~~d 586 (815)
T KOG1820|consen 545 ----RVVLGT----------------RRKVSPK-----TVVA---PVDDK-------KEPSKK--FVPKSLAK-SMKLDD 586 (815)
T ss_pred ----hhhhhh----------------hhccCcc-----cccc---chhhh-------hccccc--ccchhhhh-ccCccc
Confidence 000000 0000000 0000 00000 000011 01122111 456889
Q ss_pred hhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCC--c--hhHHHHHHHH
Q 000599 787 WCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP--F--ESYMERILPH 862 (1400)
Q Consensus 787 W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~--l--~~~l~~ll~~ 862 (1400)
++...+++..++...-...+. ...+...+++|++.+|.++|..+....||.+.......+.. . ...-....+-
T Consensus 587 ~~~~~~~~~~~~r~~~~~~~~---~~~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l~~~~~~~~e~~~~~~i 663 (815)
T KOG1820|consen 587 FKQHTAKLEILQRAEAANSKE---YTSIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRLIEAVMALEEKLLFREI 663 (815)
T ss_pred hhhhhhhhhhhhhhhcccccc---cchHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcchhhhcccHhhhhccchh
Confidence 999999999999888665552 22477789999999999999999999999999887764321 1 1122223355
Q ss_pred HHHhhCCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCcchHHHHH
Q 000599 863 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWL 942 (1400)
Q Consensus 863 L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l 942 (1400)
+..++|..++.+++....+.....+..+...-.+.+.+.|.. ++-..|-+.+..+.+++.. ++. +.......+
T Consensus 664 ~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l~~-~~~~~r~~~l~~i~~~~~~-----~g~-~~~~~~~~~ 736 (815)
T KOG1820|consen 664 LDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREALEL-KEREIRSEELLVIKLLFSS-----EGT-SILKSLRVL 736 (815)
T ss_pred hHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhccc-cchhhHHHHhhhhheeecc-----CCc-chhhhHhhh
Confidence 556999999999999999999999888888888888877743 5556777776665433321 222 223344456
Q ss_pred HhhcccccCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhc
Q 000599 943 AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILS 982 (1400)
Q Consensus 943 ~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~ 982 (1400)
..+..|+.+..+.++.++.+++...|... ++..+.....
T Consensus 737 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 775 (815)
T KOG1820|consen 737 NIIALLVKASDGKSSSKVKKTSWKPFDFL-PDPSWKISIL 775 (815)
T ss_pred hcccccccccchhhhhhhhcccccccccc-cchHHHHHHH
Confidence 66677889999999999999999999766 4445555443
No 3
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.91 E-value=4.6e-24 Score=239.12 Aligned_cols=199 Identities=30% Similarity=0.544 Sum_probs=137.5
Q ss_pred HHHHHHHhhhc---CCCCCHHHHHHHHHHHHHHHhcC--CCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 000599 283 IREFEKIGSTL---VPDKDWSVRIAAMQRVEGLVLGG--AADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLS 357 (1400)
Q Consensus 283 ~~~l~ki~~~l---~~~~dW~~R~~AL~~l~~ll~~~--~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La 357 (1400)
+.+++.|.+.| .++.||++|.+||++|++++.++ ...++.|++.++.+...|.+.+.|+|++|+++||.++..|+
T Consensus 2 ~~~~~~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~ 81 (228)
T PF12348_consen 2 EYEFEEILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLA 81 (228)
T ss_dssp ----GGS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHH
T ss_pred cchHHHHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 45677778877 47899999999999999999998 34556888999999999999999999999999999999999
Q ss_pred HHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCC-Ccch-HHHHHHHhhhCCCHHHHHHHHHHHHHHHh
Q 000599 358 KELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK-AVRV-LPRIADCAKNDRNAVLRARCCEYALLVLE 435 (1400)
Q Consensus 358 ~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~-~~rl-l~~i~~~l~~~Kn~~~R~~~~~~L~~~L~ 435 (1400)
..+|..|+++++.++|.|++++++++++|+++|..||..|+++|+ .+++ ++.+..++ ++||+.+|.+|++|+..+++
T Consensus 82 ~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~~~~-~~Kn~~vR~~~~~~l~~~l~ 160 (228)
T PF12348_consen 82 RQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILSQGL-KSKNPQVREECAEWLAIILE 160 (228)
T ss_dssp HHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHHHHT-T-S-HHHHHHHHHHHHHHHT
T ss_pred HHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999 6788 66666666 79999999999999999999
Q ss_pred hCC-Cccccccc--HHHHHHHHHHHcCCCChH------------------HHHHHHhhCCHHHHHHHh
Q 000599 436 HWP-DAPEIQRS--ADLYEDLIRCCVADAMSE------------------RSRRLFSSFDPAIQRIIN 482 (1400)
Q Consensus 436 ~~~-~~~~l~~~--~~~l~~~i~k~l~Da~~e------------------~A~~l~~~l~~~~qk~L~ 482 (1400)
.|+ ....+... ++.+.+.|.+++.|++++ +|+.+|..|||..||.||
T Consensus 161 ~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~~l~~~~qk~le 228 (228)
T PF12348_consen 161 KWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILSMLDPNIQKYLE 228 (228)
T ss_dssp T-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH----------------
T ss_pred HccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchhcchhcccccCC
Confidence 999 22234443 588999999999999998 455555666777776664
No 4
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=99.82 E-value=3.1e-19 Score=200.07 Aligned_cols=201 Identities=26% Similarity=0.374 Sum_probs=140.8
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhccCChHhHH----HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 000599 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVT----SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNAL 83 (1400)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~----~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~i 83 (1400)
-.+.||+.|.+|++.|..++..+........+. .++..+...+.|.|.+|+..|+.++..++..++..|.+++..+
T Consensus 16 ~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~ 95 (228)
T PF12348_consen 16 ESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADIL 95 (228)
T ss_dssp HT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHH
T ss_pred CCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHH
Confidence 367999999999999999999872111123332 3334667899999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHhc-hhHH-HHHHhhhhhhcCChhHHHHHHHHHHHHHHhcc--Ccchhh---
Q 000599 84 VPAVVERLGDAKQPVRDAARRLLLTLMEVSS-PTII-VERAGSYAWTHRSWRVREEFARTVTSAIGLFS--ATELTL--- 156 (1400)
Q Consensus 84 lp~LleKLgD~K~~vre~a~~~L~~l~e~~~-p~~V-~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg--~~~l~l--- 156 (1400)
+|.|++++||+|..|++.|.++|..+++.++ +..+ +..+. .+++||||.+|.+++.||..+++.++ ...+..
T Consensus 96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~~~~~l~-~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~ 174 (228)
T PF12348_consen 96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYSPKILLEILS-QGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAF 174 (228)
T ss_dssp HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HHHHHHHH-HHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHH
T ss_pred HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHHHHHHHH-HHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccch
Confidence 9999999999999999999999999999887 4555 55555 49999999999999999999999999 233321
Q ss_pred hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHH
Q 000599 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDI 211 (1400)
Q Consensus 157 ~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i 211 (1400)
.+.+++.+.++++|++++||++|..++..+|++.|+.....+. .+.+...+.|
T Consensus 175 ~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~~~a~~~~~--~l~~~~qk~l 227 (228)
T PF12348_consen 175 LKQLVKALVKLLSDADPEVREAARECLWALYSHFPERAESILS--MLDPNIQKYL 227 (228)
T ss_dssp HHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-HHH-----------------
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHhhccchh--cchhcccccC
Confidence 2679999999999999999999999999999999999888886 7777766654
No 5
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=99.81 E-value=5.5e-18 Score=212.82 Aligned_cols=429 Identities=16% Similarity=0.155 Sum_probs=290.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
..|...+.|++||+|++|++.|...+++..........+.+...+.....|+|++|...++.+|..++..++..|..|+.
T Consensus 256 ~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~ 335 (815)
T KOG1820|consen 256 KNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAK 335 (815)
T ss_pred hHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHH
Confidence 35778899999999999999999999986512222223445555567889999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcc---hhhhh
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE---LTLQR 158 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~---l~l~k 158 (1400)
.+.|.+++++||.|..+|+.+.+++.++.+.+....+.+.++. +++||||+++.+|..|+...+..++... -.+ +
T Consensus 336 ~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~l~~~~~~I~e-~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~-~ 413 (815)
T KOG1820|consen 336 NVFPSLLDRLKEKKSELRDALLKALDAILNSTPLSKMSEAILE-ALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV-K 413 (815)
T ss_pred hhcchHHHHhhhccHHHHHHHHHHHHHHHhcccHHHHHHHHHH-HhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH-H
Confidence 9999999999999999999999999999998888899999987 9999999999999999999999999533 234 7
Q ss_pred hhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChh-HHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCC-------
Q 000599 159 AILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPN------- 230 (1400)
Q Consensus 159 ~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~-l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~------- 230 (1400)
.++|.++...+|.+++||++|.++++.+++.+|+. +..+|. ++.+.-+..+...+..... ....++...
T Consensus 414 ~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge~~~~k~L~--~~~~~~~~~~~E~~~p~~~-~~~~~~~~~~a~~~~~ 490 (815)
T KOG1820|consen 414 TLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGEEVFKKLLK--DLDKQDIKPKEEKLKPLLH-FLAAPKEKSSAPDPQV 490 (815)
T ss_pred HHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHH--hhccchhhhhhhhcccccc-ccccCCCcCCCCCccc
Confidence 89999999999999999999999999999999976 677776 5544323333333322100 000000000
Q ss_pred -----c-------chhhhhccccCCCCCCCcccccc----ccccc-cCCC-CCCc------cccCCCcccCChHHHH---
Q 000599 231 -----T-------FAALEIKTASFNPKKSSPKAKSS----TRETS-LFGG-EDIT------EKLIEPIKVYSEKELI--- 283 (1400)
Q Consensus 231 -----~-------~~~~~~r~~s~~~~r~~~~~~ss----~~~~~-~~g~-~~~~------~~~v~~v~i~s~~dl~--- 283 (1400)
. +..+...++...|.+......+. ..+.+ .... .+.. ...+|-..+....|..
T Consensus 491 ~~~~~~~~~~~~~~~~~p~~~~a~vps~~ss~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~p~~~~~~~~~~~~~~ 570 (815)
T KOG1820|consen 491 EKLKKVVKVGLSNFSGLPKNSAASVPSKLSSANSSRKIPEAAEAPKLQLSLKEQRVVLGTRRKVSPKTVVAPVDDKKEPS 570 (815)
T ss_pred cccceecccccccCCCCCCCccccCCCcccccccccCCcchhhccccccccccchhhhhhhhccCccccccchhhhhccc
Confidence 0 00000000000111100000000 00000 0000 0000 0011111111122221
Q ss_pred -HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhh
Q 000599 284 -REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLG 362 (1400)
Q Consensus 284 -~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~ 362 (1400)
..+.+.......-.|.+.-.++++.+.....+....|. ...-.+..++..+..+.|.++......++....+.++-
T Consensus 571 ~~~~~~~~~~~~~~~d~~~~~~~~~~~~r~~~~~~~~~~---~~~~~~l~~~~lr~~~~~~~~~~~~~e~l~~~~~~~~l 647 (815)
T KOG1820|consen 571 KKFVPKSLAKSMKLDDFKQHTAKLEILQRAEAANSKEYT---SIQDLLLEWLVLRFEETNEALLGKVLELLIAEFQTLRL 647 (815)
T ss_pred ccccchhhhhccCccchhhhhhhhhhhhhhhcccccccc---hHHhhhhHHHHHHhhcccHHhhhhhhhhhhhhhhhcch
Confidence 11122222222346667777777776655544444443 22445677888899999999999999988888777765
Q ss_pred hHHHH----HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCC
Q 000599 363 DFEAC----AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWP 438 (1400)
Q Consensus 363 ~f~~~----a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~ 438 (1400)
.-.+. ...+.+.+..+++..+..+++.-.......+..+++....|.+...+ ..|+-.+|.+|.......+..-+
T Consensus 648 ~~~~~~~~e~~~~~~i~~~~~~~~~~~~~~~~~ti~~~s~~v~s~~~~~~~~~~~l-~~~~~~~r~~~l~~i~~~~~~~g 726 (815)
T KOG1820|consen 648 IEAVMALEEKLLFREILDLKNGRRKDTVFQKESTISEASFEVLSVLMMVPSLREAL-ELKEREIRSEELLVIKLLFSSEG 726 (815)
T ss_pred hhhcccHhhhhccchhhHHHhhhccchhhhhcchhhhhhhhhccccccchhhHhhc-cccchhhHHHHhhhhheeeccCC
Confidence 33332 22245777778888777788887777777788888888999999999 68899999999888777766665
Q ss_pred C
Q 000599 439 D 439 (1400)
Q Consensus 439 ~ 439 (1400)
.
T Consensus 727 ~ 727 (815)
T KOG1820|consen 727 T 727 (815)
T ss_pred c
Confidence 4
No 6
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.65 E-value=3.4e-10 Score=138.25 Aligned_cols=404 Identities=17% Similarity=0.194 Sum_probs=255.0
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ 82 (1400)
.+++++.++|=.-|.=|...|.+.++.....++...-...++++.+.+.|.|.-|+..|..|++-++...+ ...+..
T Consensus 9 ~LlekmtssDKDfRfMAtsDLm~eLqkdsi~Ld~dSe~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKvk---e~~le~ 85 (1233)
T KOG1824|consen 9 NLLEKMTSSDKDFRFMATSDLMTELQKDSIKLDDDSERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKVK---EDQLET 85 (1233)
T ss_pred HHHHHccCCCcchhhhhHHHHHHHHHhhhhhccccchhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhch---HHHHHH
Confidence 46899999999999999999999998765445444455788999999999999999999999999985543 345666
Q ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch-------hHHHHHHhhhhhhcCCh------hHHHHHHHHHHHHHHhc
Q 000599 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP-------TIIVERAGSYAWTHRSW------RVREEFARTVTSAIGLF 149 (1400)
Q Consensus 83 ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p-------~~V~e~l~~~~~~~Knp------kvr~~~l~~L~~~l~~f 149 (1400)
++..|..++-..|++.|+.+.-.|..+.-...| ..|+.++++ -++.-+. -++-+++..|...+..|
T Consensus 86 ~ve~L~~~~~s~keq~rdissi~Lktvi~nl~P~~~~~la~tV~~~~t~-~l~~~i~~qe~~sai~~e~lDil~d~lsr~ 164 (1233)
T KOG1824|consen 86 IVENLCSNMLSGKEQLRDISSIGLKTVIANLPPSSSSFLAATVCKRITP-KLKQAISKQEDVSAIKCEVLDILADVLSRF 164 (1233)
T ss_pred HHHHHhhhhccchhhhccHHHHHHHHHHhcCCCccccccccHHHHHHHH-HHHHHhhhcccchhhHHHHHHHHHHHHHhh
Confidence 666677776677888898888888777765444 256666665 3443333 38999999999999999
Q ss_pred cCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhc---CCC-ChhhHHHHHHHHH---hhCCCC
Q 000599 150 SATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR---HNL-PNSMVKDINARLE---RIQPQI 222 (1400)
Q Consensus 150 g~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~---~~l-~~~~l~~i~~~~~---~~~~~~ 222 (1400)
|.--.++...++..++.-|..+-..||..|+.+|+.+....+..+-.++.. +++ +++++.++...+. .+-..
T Consensus 165 g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~l~~i~r~- 243 (1233)
T KOG1824|consen 165 GTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQCLAAICRQ- 243 (1233)
T ss_pred cccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHHHHHH-
Confidence 976555666788888888999999999999999999998887654333321 133 2233333332221 11000
Q ss_pred CCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHH
Q 000599 223 RSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVR 302 (1400)
Q Consensus 223 ~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R 302 (1400)
.| .+ .|. -.++-+|-+.-| .+++ .+.+=+-|
T Consensus 244 ---ag----------------------~r---------~~~--h~~~ivp~v~~y--------~~~~-----e~~dDELr 274 (1233)
T KOG1824|consen 244 ---AG----------------------HR---------FGS--HLDKIVPLVADY--------CNKI-----EEDDDELR 274 (1233)
T ss_pred ---hc----------------------ch---------hhc--ccchhhHHHHHH--------hccc-----ccCcHHHH
Confidence 00 00 000 000001100000 0000 12233334
Q ss_pred HHHHHHHHHHHhcCCCCchhHH-HhHHHHHHHHH------------------h---------hh---cccchHHHHHHHH
Q 000599 303 IAAMQRVEGLVLGGAADHPCFR-GLLKQLVGPLS------------------T---------QL---SDRRSSIVKQACH 351 (1400)
Q Consensus 303 ~~AL~~l~~ll~~~~~~~~~f~-~~L~~L~~~L~------------------~---------~l---~Dlrs~Vv~~Ac~ 351 (1400)
...|+.+..++.-...+...+. +.+..+...|. . .- .|.-=.|-|.|..
T Consensus 275 E~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaK 354 (1233)
T KOG1824|consen 275 EYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYDTEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAK 354 (1233)
T ss_pred HHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCCCccchhhhhhhccccchhccccccccchhHHHHHHHHH
Confidence 4444444444432221100000 00000000000 0 00 1333467788999
Q ss_pred HHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCC---------------------------c
Q 000599 352 LLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA---------------------------V 404 (1400)
Q Consensus 352 ~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~---------------------------~ 404 (1400)
||..+-..=..-...+-..+-|.|+..+++.-..+......+...++.+++. +
T Consensus 355 cl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~ 434 (1233)
T KOG1824|consen 355 CLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVP 434 (1233)
T ss_pred HHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhH
Confidence 9887654433344556677889999999999989999999999999988751 1
Q ss_pred chHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCCh
Q 000599 405 RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS 463 (1400)
Q Consensus 405 rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~ 463 (1400)
.++..|...+ .+|+.+.|..|+..|..++...+.. +..++..+.+.|.-.++|.+.
T Consensus 435 ~iVkai~~ql-r~ks~kt~~~cf~lL~eli~~lp~~--l~~~~~slvpgI~~~l~DkSs 490 (1233)
T KOG1824|consen 435 LIVKAIQKQL-REKSVKTRQGCFLLLTELINVLPGA--LAQHIPSLVPGIIYSLNDKSS 490 (1233)
T ss_pred HHHHHHHHHH-hhccccchhhHHHHHHHHHHhCcch--hhhcccccchhhhhhcCCccc
Confidence 2233344445 3677778888999998888888763 566666677766666666544
No 7
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.62 E-value=7.7e-15 Score=174.69 Aligned_cols=204 Identities=16% Similarity=0.190 Sum_probs=174.3
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhcccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDV 1246 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~-vR~~aL~~L~~l~~~~~~~ 1246 (1400)
.+.+++.++-... +..+|..|...+..+++......+.+ ..++..|.+.+.|++.. .||.++......+.++|..
T Consensus 134 ~~l~~l~~ll~~~--~~~~~~~aa~~~ag~v~g~~i~~~~~--~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~ 209 (569)
T KOG1242|consen 134 YVLELLLELLTST--KIAERAGAAYGLAGLVNGLGIESLKE--FGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPP 209 (569)
T ss_pred HHHHHHHHHhccc--cHHHHhhhhHHHHHHHcCcHHhhhhh--hhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCC
Confidence 3445555544443 25799999999999999776655442 35677899999998777 7788899999999999999
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhc---cCCchhhHhHHHHHHHHHHhhcCHHH
Q 000599 1247 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL---VTEDEKTLVTCINCLTKLVGRLSQEE 1323 (1400)
Q Consensus 1247 ~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l---~s~~~~~~~~alk~l~~lv~~~~~~~ 1323 (1400)
|++|+..++|.+|...+|..++|+++|..|+++|..+++++.+-.+|.+.| ...+|++++++++.++.+.+ +.+.+
T Consensus 210 ~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~q 288 (569)
T KOG1242|consen 210 FEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQ 288 (569)
T ss_pred CCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHH
Confidence 999999999999999999999999999999999999999987555555444 35599999999999998884 55599
Q ss_pred HHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHH
Q 000599 1324 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ 1376 (1400)
Q Consensus 1324 l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~ 1376 (1400)
|..++|+++|.|.+-+||++++||+++..||..++.++.| +|.+|++.|-.+.
T Consensus 289 Ls~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip~Lld~l 342 (569)
T KOG1242|consen 289 LSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIPTLLDAL 342 (569)
T ss_pred HHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999998 9999999886554
No 8
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.56 E-value=7.1e-08 Score=122.46 Aligned_cols=382 Identities=14% Similarity=0.147 Sum_probs=252.1
Q ss_pred hHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhc-hh
Q 000599 38 EVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS-PT 116 (1400)
Q Consensus 38 ~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~-p~ 116 (1400)
.|.+++..+....++.|.+..+.||-+|..+..-.+..+.+|+..+++.+.+-++|....||-.|.+++.++++... -.
T Consensus 115 ~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~ 194 (1075)
T KOG2171|consen 115 KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNK 194 (1075)
T ss_pred chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccch
Confidence 57788888888999999999999999999999999999999999999999999999999999999999999998653 11
Q ss_pred HH---HHHHhh-------hhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCC--ChhHHHHHHHHHH
Q 000599 117 II---VERAGS-------YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP--NPGVREAAILCIE 184 (1400)
Q Consensus 117 ~V---~e~l~~-------~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~--n~~VR~aA~~~l~ 184 (1400)
.. +..+++ ......+-..-.+++..|.+.++..+.-.-+....+|.......++. +..+|-.|.++++
T Consensus 195 ~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~iv 274 (1075)
T KOG2171|consen 195 SEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLV 274 (1075)
T ss_pred HHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence 11 111221 23455666666778888877776654322122256666666666654 6789999999999
Q ss_pred HHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCC
Q 000599 185 EMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGE 264 (1400)
Q Consensus 185 ~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~ 264 (1400)
.+.+......+ ... ++-+..+-.+.....+...+ + .++.+ .
T Consensus 275 s~~e~Ap~~~k-~~~--~~~~~lv~~~l~~mte~~~D-~---------------------------ew~~~--------d 315 (1075)
T KOG2171|consen 275 SLSEYAPAMCK-KLA--LLGHTLVPVLLAMMTEEEDD-D---------------------------EWSNE--------D 315 (1075)
T ss_pred HHHHhhHHHhh-hch--hhhccHHHHHHHhcCCcccc-h---------------------------hhccc--------c
Confidence 99888322221 111 11111111111111111100 0 00000 0
Q ss_pred CCccccCCCcccCChHHHH-------------HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHH
Q 000599 265 DITEKLIEPIKVYSEKELI-------------REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLV 331 (1400)
Q Consensus 265 ~~~~~~v~~v~i~s~~dl~-------------~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~ 331 (1400)
+.++++....+.. ..+.. .-+-...+.+..+.+|++|.+||-.|-.+..|.. +.....|..++
T Consensus 316 ~~ded~~~~~~~~-A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~---~~m~~~l~~Il 391 (1075)
T KOG2171|consen 316 DLDEDDEETPYRA-AEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHAALLALSVIAEGCS---DVMIGNLPKIL 391 (1075)
T ss_pred ccccccccCcHHH-HHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHcccH---HHHHHHHHHHH
Confidence 0000000000000 01111 1112223334578999999999999999988753 23335688899
Q ss_pred HHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHH-HHHHHHHHhchh-hHHHHHHHHHHHHHHHHhCCCcch---
Q 000599 332 GPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEM-FIPVLFKLVVIT-VLVIAESSDNCIKTMLRNCKAVRV--- 406 (1400)
Q Consensus 332 ~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~-~lp~Ll~~~~~~-kkvi~~sa~~al~~i~~~~~~~rl--- 406 (1400)
..+...++|..-.|---||.+|+.++.-+.+.|..+... +.|.|+..+.+. +..+...|..|+..+.+.|..+.+
T Consensus 392 ~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY 471 (1075)
T KOG2171|consen 392 PIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY 471 (1075)
T ss_pred HHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence 999999999988888889999999999999999886655 555777777664 335677788888888888875443
Q ss_pred HHHHHH----HhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 407 LPRIAD----CAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 407 l~~i~~----~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
++.|++ .+.++.++.+|..+..-+..+-..-+. .+.++.+.+.+.+++.|..++.+
T Consensus 472 Ld~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~--~F~pY~d~~Mp~L~~~L~n~~~~ 531 (1075)
T KOG2171|consen 472 LDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE--KFIPYFDRLMPLLKNFLQNADDK 531 (1075)
T ss_pred HHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh--hhHhHHHHHHHHHHHHHhCCCch
Confidence 333333 333455678888888877777666655 26667778888888888877754
No 9
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.48 E-value=7.5e-11 Score=148.76 Aligned_cols=471 Identities=18% Similarity=0.223 Sum_probs=284.9
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHh-h
Q 000599 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL-H 79 (1400)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~-~ 79 (1400)
|+.+-+-|.|.+|++|.+|+-.|..+.+...+.+ ..++..++.++.++++|.++.|..+|+.+++.+...+...+.+ |
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m-~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~ 428 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVM-IGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH 428 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHH-HHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence 4567788999999999999999999998765443 3467888999999999999999999999999999999888865 5
Q ss_pred hhhhHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHhch-------hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccC
Q 000599 80 FNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEVSSP-------TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1400)
Q Consensus 80 ~~~ilp~LleKLgD~K~-~vre~a~~~L~~l~e~~~p-------~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~ 151 (1400)
-..+.|.|+..+-+... +|..+|..+|+.+.|-+.. +.++++.+.....+.+|.|++.++..|.++-..-+.
T Consensus 429 ~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~ 508 (1075)
T KOG2171|consen 429 HERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQE 508 (1075)
T ss_pred HHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhh
Confidence 55566688888877544 7889999999999986543 345554444456678899999999999998888888
Q ss_pred cchhhhhhhHHHHHHhhCCCC----hhHHHHHHHHHHHHHhhhC-hhHHHhhhc------------CCCChhh---HHHH
Q 000599 152 TELTLQRAILPPILQMLNDPN----PGVREAAILCIEEMYTYAG-PQFRDELHR------------HNLPNSM---VKDI 211 (1400)
Q Consensus 152 ~~l~l~k~~lp~l~~~L~d~n----~~VR~aA~~~l~~l~~~~G-~~l~~~L~~------------~~l~~~~---l~~i 211 (1400)
+.+++.+.++|.+.++|+..+ ..+|-..++|+..+-.-+| ++|..+-.. .+...-+ +-..
T Consensus 509 ~F~pY~d~~Mp~L~~~L~n~~~~d~r~LrgktmEcisli~~AVGke~F~~~a~eliqll~~~~~~~~~~dd~~~sy~~~~ 588 (1075)
T KOG2171|consen 509 KFIPYFDRLMPLLKNFLQNADDKDLRELRGKTMECLSLIARAVGKEKFLPLAEELIQLLLELQGSDQDDDDPLRSYMIAF 588 (1075)
T ss_pred hhHhHHHHHHHHHHHHHhCCCchhhHHHHhhHHHHHHHHHHHhhhhhhhHhHHHHHHHHHhhcccchhhccccHHHHHHH
Confidence 878877899999999998776 4688889999999999999 445433320 0001111 1111
Q ss_pred HHHHHhhCCCC-CCCCCCCCcchh---hh-hccccCCCCCCCccccccc-cccccCCCCCC-ccccCCCcccCC----hH
Q 000599 212 NARLERIQPQI-RSSDGLPNTFAA---LE-IKTASFNPKKSSPKAKSST-RETSLFGGEDI-TEKLIEPIKVYS----EK 280 (1400)
Q Consensus 212 ~~~~~~~~~~~-~~~~~~~~~~~~---~~-~r~~s~~~~r~~~~~~ss~-~~~~~~g~~~~-~~~~v~~v~i~s----~~ 280 (1400)
-.++.++-+.- .+ |.. +. -+.+...|.-... .+.. .+.....+.+. +..+-..+.|.+ ++
T Consensus 589 warmc~ilg~~F~p-------~L~~Vmppl~~ta~~~p~~~~~--d~~d~e~~~~~~~~e~~~~~~~e~~~I~Tsvl~eK 659 (1075)
T KOG2171|consen 589 WARMCRILGDDFAP-------FLPVVMPPLLKTARLDPDVALS--DEEDEEEEQDLDGWEVVELGDKENIGIRTSVLDEK 659 (1075)
T ss_pred HHHHHHHhchhhHh-------HHHHHhHHHHHhhccCCcccCc--CchhhhhccccccchhhccCCceeeeeeehhHHHH
Confidence 12222221110 00 000 00 0000000000000 0000 00000000000 000000111100 00
Q ss_pred H----------------HHHHHHHHhh----hcCCCCCHHHHHHHHHHHHHHHh-------------------------c
Q 000599 281 E----------------LIREFEKIGS----TLVPDKDWSVRIAAMQRVEGLVL-------------------------G 315 (1400)
Q Consensus 281 d----------------l~~~l~ki~~----~l~~~~dW~~R~~AL~~l~~ll~-------------------------~ 315 (1400)
+ +...++...+ .+...----.|..|+..+-.++. +
T Consensus 660 ~~A~~~Lv~~a~~lk~~F~pYve~v~~l~v~~l~f~fhdgVR~aa~~~~p~ll~~~~~A~~~~p~~l~~l~~~~~~~l~~ 739 (1075)
T KOG2171|consen 660 ETACEALGEYAKELKEAFAPYVEQVVELMVPLLKFYFHDGVRKAAAESMPQLLTCALKACQGGPEYLKQLWEAIRPALIK 739 (1075)
T ss_pred HHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHH
Confidence 0 0000000000 00000000012222222211110 0
Q ss_pred CC-CCch---------hHHH-------------hHHHHHHHHHhhh---------------------------cccchHH
Q 000599 316 GA-ADHP---------CFRG-------------LLKQLVGPLSTQL---------------------------SDRRSSI 345 (1400)
Q Consensus 316 ~~-~~~~---------~f~~-------------~L~~L~~~L~~~l---------------------------~Dlrs~V 345 (1400)
+- .+++ .|.. ++..+...+.+.+ .+.-..+
T Consensus 740 ~l~~E~e~~vl~~vl~~f~~~i~~~G~~~L~~~~~~~~~~~~~~~~l~~~~~~~~r~~~~~eed~d~~eee~~~e~d~~l 819 (1075)
T KOG2171|consen 740 ALEEEPETEVLSEILESFAECIEVMGDNCLNEDGLEALLGGLLAQLLQHFKRMQDRQEEDDEEDDDIEEEEDLDEQDAYL 819 (1075)
T ss_pred HhhcCCcHHHHHHHHHHHHHHHHhcCcccCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHHHHHHhhhhHHH
Confidence 00 0000 0111 1111111111111 1223336
Q ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCC------CcchHHHHHHHhhhCCC
Q 000599 346 VKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK------AVRVLPRIADCAKNDRN 419 (1400)
Q Consensus 346 v~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~------~~rll~~i~~~l~~~Kn 419 (1400)
...++.++..+++.++..|.++.+.+.|.+++++..++.+-++-|..+++.+++.|+ ...++|.++..+ .++.
T Consensus 820 l~~i~~i~~~l~k~~k~~f~p~f~~~~p~iv~~l~~~~~~~r~~av~~~~d~ie~~~~a~~~~~~~~~p~~~~~~-~d~~ 898 (1075)
T KOG2171|consen 820 LDAISDILAALAKALKGSFLPFFENFLPLIVKLLKSKKTVARQWAVCIFDDLIEGCGEASAKYKERFLPLVLEAL-QDSD 898 (1075)
T ss_pred HHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHc-CCCC
Confidence 667899999999999999999999999999999999988889999999999999986 358899999999 7999
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH--HHHHHHhhCCHHHHHHHhhh
Q 000599 420 AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE--RSRRLFSSFDPAIQRIINEE 484 (1400)
Q Consensus 420 ~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e--~A~~l~~~l~~~~qk~L~~~ 484 (1400)
|++|+.+..-+..+-+..+.. .........+.+...+..++.- .-+..+...-.++.|.+...
T Consensus 899 pEVRqaAsYGiGvlaq~~g~~--y~~v~~~~l~~L~~~iq~~~ar~Ee~~~ateNa~gaiaki~~~~ 963 (1075)
T KOG2171|consen 899 PEVRQAAAYGMGVLAQFGGED--YAPVCSEALPLLVQVLQPPLARTEENRRATENAIGAIAKILLFN 963 (1075)
T ss_pred HHHHHHHHHHHHHHHHHcCcc--hHHHHHHHHHHHHHHHcChhhhhHHHhHHHHHHHHHHHHHHHhC
Confidence 999999988888776665542 2222334455555666666553 55556666777778877764
No 10
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=99.42 E-value=8.7e-07 Score=109.26 Aligned_cols=365 Identities=14% Similarity=0.156 Sum_probs=228.8
Q ss_pred HHHHHHhhhccCCcc------hHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch
Q 000599 42 LVDCCLDLLKDNNFK------VSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP 115 (1400)
Q Consensus 42 lv~~l~~~l~DsN~~------V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p 115 (1400)
++..+.+.+.+.|.+ +...+++++..+..++|..+-.+-..++..++.-++..+..||.++.-+|-.+.-.++-
T Consensus 128 V~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~aVrKkai~~l~~la~~~~~ 207 (1233)
T KOG1824|consen 128 VCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPNFHLSILKCLLPQLQSPRLAVRKKAITALGHLASSCNR 207 (1233)
T ss_pred HHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcchHHHHHHHHhhcccChHHHHHHHHHHHHHHHHHhcCH
Confidence 334444555555444 78888999999999998877777778889999999999999999999999998876543
Q ss_pred ---hHHHHHHhhhhhhcC-ChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhh---CCCChhHHHHHHHHHHHHHh
Q 000599 116 ---TIIVERAGSYAWTHR-SWRVREEFARTVTSAIGLFSATELTLQRAILPPILQML---NDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 116 ---~~V~e~l~~~~~~~K-npkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L---~d~n~~VR~aA~~~l~~l~~ 188 (1400)
..+++.++. ++.+. ++-..--.+++|.+....-|...-.-...++|.+.... +..+.+.|+...+.+..+.+
T Consensus 208 ~ly~~li~~Ll~-~L~~~~q~~~~rt~Iq~l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~ 286 (1233)
T KOG1824|consen 208 DLYVELIEHLLK-GLSNRTQMSATRTYIQCLAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLR 286 (1233)
T ss_pred HHHHHHHHHHHh-ccCCCCchHHHHHHHHHHHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHH
Confidence 245666665 44433 22222223444544444444322111146788888887 88889999999999999888
Q ss_pred hhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCC-CCCc
Q 000599 189 YAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGG-EDIT 267 (1400)
Q Consensus 189 ~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~-~~~~ 267 (1400)
.....+.++.. ......... -.+.|... |.. +...... -+.+
T Consensus 287 rcp~ei~p~~p------ei~~l~l~y-isYDPNy~--------yd~----------------------~eDed~~~~ed~ 329 (1233)
T KOG1824|consen 287 RCPKEILPHVP------EIINLCLSY-ISYDPNYN--------YDT----------------------EEDEDAMFLEDE 329 (1233)
T ss_pred hChhhhcccch------HHHHHHHHH-hccCCCCC--------CCC----------------------ccchhhhhhhcc
Confidence 87766655543 111111111 11111111 000 0000000 0000
Q ss_pred cccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHH
Q 000599 268 EKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVK 347 (1400)
Q Consensus 268 ~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~ 347 (1400)
+++ +.-+.|+.+ .|-.|+.|.+|.+-|.+++...---.++| ++.+...++.+++|.--+|-.
T Consensus 330 eDd-e~~deYsDD--------------eD~SWkVRRaAaKcl~a~IsSR~E~L~~~---~q~l~p~lI~RfkEREEnVk~ 391 (1233)
T KOG1824|consen 330 EDD-EQDDEYSDD--------------EDMSWKVRRAAAKCLEAVISSRLEMLPDF---YQTLGPALISRFKEREENVKA 391 (1233)
T ss_pred ccc-hhccccccc--------------cchhHHHHHHHHHHHHHHHhccHHHHHHH---HHHhCHHHHHHHHHHhhhHHH
Confidence 000 001222111 34579999999999999987532112344 567778888889888888887
Q ss_pred HHHHHHHHHHHHhh----------------hhHH-HHHHHHHHHHH----HHhchhhHHHHHHHHHHHHHHHHhC-----
Q 000599 348 QACHLLCFLSKELL----------------GDFE-ACAEMFIPVLF----KLVVITVLVIAESSDNCIKTMLRNC----- 401 (1400)
Q Consensus 348 ~Ac~~l~~La~~Lg----------------~~f~-~~a~~~lp~Ll----~~~~~~kkvi~~sa~~al~~i~~~~----- 401 (1400)
..+++...+....+ ..|+ .+...-+|.++ +.+.+++--.+..+..-+..++...
T Consensus 392 dvf~~yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~~l~ 471 (1233)
T KOG1824|consen 392 DVFHAYIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPGALA 471 (1233)
T ss_pred HHHHHHHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcchhh
Confidence 77777666654443 2332 22333334443 3443332223444555555655443
Q ss_pred -CCcchHHHHHHHhhhCCC--HHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 402 -KAVRVLPRIADCAKNDRN--AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 402 -~~~rll~~i~~~l~~~Kn--~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
+.+.++|-|.-.+ ++|| ...+...+.|+..+|..++.+ .++.+++.+...+..+++|.=+.
T Consensus 472 ~~~~slvpgI~~~l-~DkSsss~~ki~~L~fl~~~L~s~~p~-~fhp~~~~Ls~~v~~aV~d~fyK 535 (1233)
T KOG1824|consen 472 QHIPSLVPGIIYSL-NDKSSSSNLKIDALVFLYSALISHPPE-VFHPHLSALSPPVVAAVGDPFYK 535 (1233)
T ss_pred hcccccchhhhhhc-CCccchHHHHHHHHHHHHHHHhcCChh-hcccchhhhhhHHHHHhcCchHh
Confidence 3568889899888 7886 578999999999999999885 68889999999999999999887
No 11
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.17 E-value=7.8e-07 Score=106.18 Aligned_cols=379 Identities=14% Similarity=0.130 Sum_probs=231.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhH-----h
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFK-----L 78 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~-----~ 78 (1400)
++..|.+.+--.|--...-+..++...+- .++.+++..|...+.....+.++.|+.+|..+++.....+. +
T Consensus 95 ~l~~lgd~~~lIr~tvGivITTI~s~~~~----~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~r 170 (885)
T KOG2023|consen 95 CLHGLGDASPLIRATVGIVITTIASTGGL----QHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTR 170 (885)
T ss_pred HHhhccCchHHHHhhhhheeeeeeccccc----ccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccC
Confidence 44455555544454444444444433221 22445666666667767778999999999999987665544 4
Q ss_pred hhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH------hchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCc
Q 000599 79 HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV------SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1400)
Q Consensus 79 ~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~------~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~ 152 (1400)
-+..++|-+++-+....+++|..|..|+..++-. ...+..+|.+.. .-+..+|.||..++..+.-.++-..-+
T Consensus 171 pl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFa-lanD~~~eVRk~vC~alv~Llevr~dk 249 (885)
T KOG2023|consen 171 PLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFA-LANDEDPEVRKNVCRALVFLLEVRPDK 249 (885)
T ss_pred chHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHH-HccCCCHHHHHHHHHHHHHHHHhcHHh
Confidence 6788999999999999999999999999988632 123445555554 447888999999999998877765544
Q ss_pred chhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC--hhHHHhhhcCCCChhhHHHHH-----HHHHhhCCCCCCC
Q 000599 153 ELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG--PQFRDELHRHNLPNSMVKDIN-----ARLERIQPQIRSS 225 (1400)
Q Consensus 153 ~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G--~~l~~~L~~~~l~~~~l~~i~-----~~~~~~~~~~~~~ 225 (1400)
..+-...++.++....+|.|.+|--.|+++...+...-- +.+.++|. ++=|..+.-.. --+-+...+-...
T Consensus 250 l~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~l~--kliPvLl~~M~Ysd~D~~LL~~~eeD~~v 327 (885)
T KOG2023|consen 250 LVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPYLD--KLIPVLLSGMVYSDDDIILLKNNEEDESV 327 (885)
T ss_pred cccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHHHH--HHHHHHHccCccccccHHHhcCccccccC
Confidence 444226788899999999999999999999988875421 22444544 22222111000 0000000000000
Q ss_pred CCCCCcchhhhhccccCCCCCCCcccccccccc-ccCCCCC--CccccCCCccc--CChHHHH--------HHHHHHhhh
Q 000599 226 DGLPNTFAALEIKTASFNPKKSSPKAKSSTRET-SLFGGED--ITEKLIEPIKV--YSEKELI--------REFEKIGST 292 (1400)
Q Consensus 226 ~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~-~~~g~~~--~~~~~v~~v~i--~s~~dl~--------~~l~ki~~~ 292 (1400)
|... ..-| |+-...+........ ..+...+ .+++....+.+ -|..-+. +.++.+.+.
T Consensus 328 pDre-----eDIk-----PRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSAAaLDVLanvf~~elL~~l~Pl 397 (885)
T KOG2023|consen 328 PDRE-----EDIK-----PRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSAAALDVLANVFGDELLPILLPL 397 (885)
T ss_pred Cchh-----hhcc-----chhhhchhccCccccccccccccccccccccccccHhhccHHHHHHHHHhhHHHHHHHHHHH
Confidence 0000 0001 000000000000000 0000000 00011111111 0111110 113333333
Q ss_pred c---CCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhh-hHHHHH
Q 000599 293 L---VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLG-DFEACA 368 (1400)
Q Consensus 293 l---~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~-~f~~~a 368 (1400)
| ..+++|+.|..++-.+-+|.+|.- ..|+++|.+|+.-|...+.|.---|-+-+|=|+...+.-.-. .=+.|.
T Consensus 398 Lk~~L~~~~W~vrEagvLAlGAIAEGcM---~g~~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f 474 (885)
T KOG2023|consen 398 LKEHLSSEEWKVREAGVLALGAIAEGCM---QGFVPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYF 474 (885)
T ss_pred HHHHcCcchhhhhhhhHHHHHHHHHHHh---hhcccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhh
Confidence 3 367999999999999999998853 456678889999889999887777777899999988765543 234678
Q ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCC
Q 000599 369 EMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 369 ~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~ 402 (1400)
..++..|++.+-|++|-+.++|..|..++.+..+
T Consensus 475 ~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~ 508 (885)
T KOG2023|consen 475 KPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAG 508 (885)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhcc
Confidence 8889999999999999999999999999998764
No 12
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=2e-08 Score=120.65 Aligned_cols=359 Identities=18% Similarity=0.263 Sum_probs=248.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHH-HHHHHHHHHHHHhhhhhHhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQ-GALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~-~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
+.+.+.+...+-.+|..|--.+..++....-. ...=..+++.+...+.|.|..... .++-++..+...+|..+.+|+
T Consensus 137 ~~l~~ll~~~~~~~~~~aa~~~ag~v~g~~i~--~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyi 214 (569)
T KOG1242|consen 137 ELLLELLTSTKIAERAGAAYGLAGLVNGLGIE--SLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYI 214 (569)
T ss_pred HHHHHHhccccHHHHhhhhHHHHHHHcCcHHh--hhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchH
Confidence 45667777778888888888887777664421 111235777777788887666555 677888888889999999999
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHH---HHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhh-
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTII---VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL- 156 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V---~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l- 156 (1400)
..++|.++.++||.-..||++|..+..+++.+.++..| +-.++. .+...+|+.+...+..+. ++.....+.+.+
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~aVK~llpsll~-~l~~~kWrtK~aslellg-~m~~~ap~qLs~~ 292 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAYAVKLLLPSLLG-SLLEAKWRTKMASLELLG-AMADCAPKQLSLC 292 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcchhhHhhhhhHH-HHHHHhhhhHHHHHHHHH-HHHHhchHHHHHH
Confidence 99999999999999999999999999999998777543 334444 333348999999988886 444444444432
Q ss_pred hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChh-HHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhh
Q 000599 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAAL 235 (1400)
Q Consensus 157 ~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~-l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~ 235 (1400)
...++|.+.+-|-|+.++||+++++++..+...+-.. |..++. .-++.+. +
T Consensus 293 lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svidN~dI~~~ip-------------~Lld~l~------d--------- 344 (569)
T KOG1242|consen 293 LPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVIDNPDIQKIIP-------------TLLDALA------D--------- 344 (569)
T ss_pred HhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhhccHHHHHHHH-------------HHHHHhc------C---------
Confidence 2679999999999999999999999999887654432 222221 1111110 0
Q ss_pred hhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHh-hhcCCCCCHHHHHHHHHHHHHHHh
Q 000599 236 EIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIG-STLVPDKDWSVRIAAMQRVEGLVL 314 (1400)
Q Consensus 236 ~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~-~~l~~~~dW~~R~~AL~~l~~ll~ 314 (1400)
|.+.++. .++.+. ..|.. .
T Consensus 345 --------p~~~~~e----------------------------------~~~~L~~ttFV~----------------~-- 364 (569)
T KOG1242|consen 345 --------PSCYTPE----------------------------------CLDSLGATTFVA----------------E-- 364 (569)
T ss_pred --------cccchHH----------------------------------HHHhhcceeeee----------------e--
Confidence 0000000 000000 00100 0
Q ss_pred cCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhchhhHHHHHHHHH
Q 000599 315 GGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL--LGDFEACAEMFIPVLFKLVVITVLVIAESSDN 392 (1400)
Q Consensus 315 ~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~L--g~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~ 392 (1400)
.+-+. |.-++.-|...+.+..+..-+.++..+..++... .....+|+..++|.|=+.+.+.-.-+|.-+..
T Consensus 365 ---V~~ps----LalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~vaar 437 (569)
T KOG1242|consen 365 ---VDAPS----LALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAVAAR 437 (569)
T ss_pred ---ecchh----HHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHHHHH
Confidence 00011 3344455555666666666688999999999888 67889999999999988888888889999999
Q ss_pred HHHHHHHhCC---CcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCCh
Q 000599 393 CIKTMLRNCK---AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMS 463 (1400)
Q Consensus 393 al~~i~~~~~---~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~ 463 (1400)
|+..+++..+ ++.++|.+.+.+..+|.-.-|..++.-+..++...+.+. + -+.+.+.+.....+-..
T Consensus 438 AL~~l~e~~g~~~f~d~~p~l~e~~~~~k~~~~~~g~aq~l~evl~~~~v~~-~---~~~~~~~~a~~~~~~~~ 507 (569)
T KOG1242|consen 438 ALGALLERLGEVSFDDLIPELSETLTSEKSLVDRSGAAQDLSEVLAGLGVEK-V---EDILPEILANASSVLID 507 (569)
T ss_pred HHHHHHHHHHhhcccccccHHHHhhccchhhhhhHHHhhhHHHHHhcccchH-H---HHHHHHHHHHHhhccch
Confidence 9999998664 578999999999888888888889999888888887642 2 23344444444444443
No 13
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=99.13 E-value=5e-05 Score=104.56 Aligned_cols=406 Identities=16% Similarity=0.163 Sum_probs=248.0
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--HHHH
Q 000599 784 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RILP 861 (1400)
Q Consensus 784 s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ll~ 861 (1400)
+.+=..|..|+..|.++-.......+.|+ +. -.+..|...|..++.++...+.-+|.-+.. +.+.....+. ..+|
T Consensus 457 s~s~~iQ~~A~~~L~nLa~~ndenr~aIi-ea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~-~~~qir~iV~~aGAIp 533 (2102)
T PLN03200 457 LSSEQQQEYAVALLAILTDEVDESKWAIT-AA-GGIPPLVQLLETGSQKAKEDSATVLWNLCC-HSEDIRACVESAGAVP 533 (2102)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHH-HC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhC-CcHHHHHHHHHCCCHH
Confidence 33445666666666666543322222121 11 134556677777888888888888887765 3444455552 4788
Q ss_pred HHHHhhCCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCcc-hHHH
Q 000599 862 HVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG-ILKL 940 (1400)
Q Consensus 862 ~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~-~~~~ 940 (1400)
.|++-|.+....++..+..+|..+...-+.+ +++.++..+ ...+++.+..+++-+...++- .+.......+ ....
T Consensus 534 pLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~-~I~~Lv~LL-lsdd~~~~~~aL~vLgnIlsl--~~~~d~~~~g~~~~g 609 (2102)
T PLN03200 534 ALLWLLKNGGPKGQEIAAKTLTKLVRTADAA-TISQLTALL-LGDLPESKVHVLDVLGHVLSV--ASLEDLVREGSAAND 609 (2102)
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHHHhccchh-HHHHHHHHh-cCCChhHHHHHHHHHHHHHhh--cchhHHHHHhhhccc
Confidence 8999887666778888888888887655554 345666655 336788888888876554431 1111000000 0011
Q ss_pred HHHhhcccccCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHHhhhcchhHHHHHHHhhhhhhhcccC
Q 000599 941 WLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYLQSKKERQRLK 1020 (1400)
Q Consensus 941 ~l~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~ 1020 (1400)
.+..++.++...+.++++.|..+|..+|... .+ ....+ +
T Consensus 610 gL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~-~d------------~~~av---v------------------------- 648 (2102)
T PLN03200 610 ALRTLIQLLSSSKEETQEKAASVLADIFSSR-QD------------LCESL---A------------------------- 648 (2102)
T ss_pred cHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-hH------------HHHHH---H-------------------------
Confidence 3444444544445555555555554444211 00 00000 0
Q ss_pred CCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccchhhcccccCCCCCCccchHHHhhhccCCCCcCC
Q 000599 1021 SSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQNFETGANADV 1100 (1400)
Q Consensus 1021 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 1100 (1400)
T Consensus 649 -------------------------------------------------------------------------------- 648 (2102)
T PLN03200 649 -------------------------------------------------------------------------------- 648 (2102)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred CccccCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCcccCCCCCCccccccCCCCCCCCHHHHHHHhhcCC
Q 000599 1101 SSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIPQILHLMCNGN 1180 (1400)
Q Consensus 1101 ~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~~ll~~l~~~~ 1180 (1400)
..+.|..+++.+...+
T Consensus 649 ----------------------------------------------------------------~agaIpPLV~LLss~~ 664 (2102)
T PLN03200 649 ----------------------------------------------------------------TDEIINPCIKLLTNNT 664 (2102)
T ss_pred ----------------------------------------------------------------HcCCHHHHHHHHhcCC
Confidence 0011444555555543
Q ss_pred CCChhHHHHHHHHHHHHHhcCChhhHHHHH-HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHH
Q 000599 1181 DGSPTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL 1259 (1400)
Q Consensus 1181 ~~~~~~r~~al~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll 1259 (1400)
.+.+++|...|..+...+......... ...+..|.+.|++.+..+++.|+..|..|++.....-+--.+-.++.++
T Consensus 665 ---~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv 741 (2102)
T PLN03200 665 ---EAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLT 741 (2102)
T ss_pred ---hHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHH
Confidence 267788888888887755433221111 2356779999999888999999999999999764432222345688899
Q ss_pred HHhcCCcHHHHHHHHHHHHHHHhhcChhh----------HHHhhhhhccCCch--hhHhHHHHHHHHHHhh-----c--C
Q 000599 1260 HVTKDAVPKVSNEAEHCLTVVLSQYDPFR----------CLSVIVPLLVTEDE--KTLVTCINCLTKLVGR-----L--S 1320 (1400)
Q Consensus 1260 ~~~~D~~k~V~~aA~~al~~i~~~~~p~~----------~l~~l~~~l~s~~~--~~~~~alk~l~~lv~~-----~--~ 1320 (1400)
..+++...++++.|..++..++.+.+.++ ++..|..+|++.+. .....+++.|..+... . +
T Consensus 742 ~lLr~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~ 821 (2102)
T PLN03200 742 RVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLARTKGGANFSHP 821 (2102)
T ss_pred HHHHhCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhhcccCCCCCC
Confidence 99988889999999999999999988765 23444455655443 3444588888888853 1 1
Q ss_pred HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHHHHHhhh
Q 000599 1321 QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRIS 1388 (1400)
Q Consensus 1321 ~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~~yi~r~~ 1388 (1400)
+=...-..|.=+..|++|+.+..++|-..|+..+-.+|. |=--.++.|-....+-+....+|.-
T Consensus 822 ~~~~~~e~p~~l~~l~~~l~~~~p~~~~kai~il~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~ 885 (2102)
T PLN03200 822 PWAVLAEVPSSLEPLVRCLAEGHPLVQDKAIEILSRLCR----DQPVVLGDLIANASKCISSLADRII 885 (2102)
T ss_pred chhhHHhccCchHHHHHHHHcCChHHHHHHHHHHHHHhc----cChhHHHHHHhcccchHHHHHHHHh
Confidence 111122345667788999999999999999999998882 1111355555566666666666643
No 14
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.11 E-value=2.8e-08 Score=120.19 Aligned_cols=377 Identities=16% Similarity=0.192 Sum_probs=236.4
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHH-------hh
Q 000599 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL-------SG 73 (1400)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~-------l~ 73 (1400)
|+-++|.-.+.|-+.|.+|++.|.+++.-+++.+..-=...++......++..|-.|...|+|+|+.+++. .+
T Consensus 219 MqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~ 298 (859)
T KOG1241|consen 219 MQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYG 298 (859)
T ss_pred eeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567778899999999999999999988765432211234555556788999999999999999977642 11
Q ss_pred h------------hhHhhhhhhHHHHHHHhCCCC-------hhHHHHHHHHHHHHHHHhchhHHHHHHhhh---hhhcCC
Q 000599 74 E------------HFKLHFNALVPAVVERLGDAK-------QPVRDAARRLLLTLMEVSSPTIIVERAGSY---AWTHRS 131 (1400)
Q Consensus 74 ~------------~~~~~~~~ilp~LleKLgD~K-------~~vre~a~~~L~~l~e~~~p~~V~e~l~~~---~~~~Kn 131 (1400)
+ +.+..+..++|.|++.|..+. -.+-.+|.-||..+++++.- .++..++++ -+++.+
T Consensus 299 e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~~~D-~Iv~~Vl~Fiee~i~~pd 377 (859)
T KOG1241|consen 299 EAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQCVGD-DIVPHVLPFIEENIQNPD 377 (859)
T ss_pred HHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHHhcc-cchhhhHHHHHHhcCCcc
Confidence 1 223456689999999984321 23566788888888887754 455555542 466889
Q ss_pred hhHHHHHHHHHHHHHHhccCcc--h-hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhH
Q 000599 132 WRVREEFARTVTSAIGLFSATE--L-TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMV 208 (1400)
Q Consensus 132 pkvr~~~l~~L~~~l~~fg~~~--l-~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l 208 (1400)
|+-|+...-.+.+.++ |... + ++....+|.++.++.|+.-.||+.+.++++.+..++.+...+... ...++
T Consensus 378 wr~reaavmAFGSIl~--gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~----l~~~l 451 (859)
T KOG1241|consen 378 WRNREAAVMAFGSILE--GPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQEL----LQSKL 451 (859)
T ss_pred hhhhhHHHHHHHhhhc--CCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhh----hhHHH
Confidence 9999977666655543 3322 2 233567889999999999999999999999999988754322211 11222
Q ss_pred HHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCcccc--ccccccccCCCCCCccccCCCcccCChHHHHHHH
Q 000599 209 KDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAK--SSTRETSLFGGEDITEKLIEPIKVYSEKELIREF 286 (1400)
Q Consensus 209 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~--ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l 286 (1400)
..+.+-+. .+ | .++...++ .+-.+.-...+.+- ...++.+ .-++..+
T Consensus 452 ~~l~~gL~---De-P---------------------rva~N~CWAf~~Laea~~eA~~s~--~qt~~~t----~~y~~ii 500 (859)
T KOG1241|consen 452 SALLEGLN---DE-P---------------------RVASNVCWAFISLAEAAYEAAVSN--GQTDPAT----PFYEAII 500 (859)
T ss_pred HHHHHHhh---hC-c---------------------hHHHHHHHHHHHHHHHHHHhccCC--CCCCccc----hhHHHHH
Confidence 22222211 11 1 00000000 00000000000000 0011111 1223344
Q ss_pred HHHhhhcC--CCCCHHHHHHHHHHHHHHHhcCCCCc-hhHHHh----HHHHHHHHHhhhc--ccchH---HHHHHHHHHH
Q 000599 287 EKIGSTLV--PDKDWSVRIAAMQRVEGLVLGGAADH-PCFRGL----LKQLVGPLSTQLS--DRRSS---IVKQACHLLC 354 (1400)
Q Consensus 287 ~ki~~~l~--~~~dW~~R~~AL~~l~~ll~~~~~~~-~~f~~~----L~~L~~~L~~~l~--Dlrs~---Vv~~Ac~~l~ 354 (1400)
+.+.+.-. +..+-.-|..|.+.|..+++....++ +..... +..|-..+...+. +-|-+ +...-|.+|+
T Consensus 501 ~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~~~~l~il~kl~q~i~~~~l~~~dr~q~~eLQs~Lc~~Lq 580 (859)
T KOG1241|consen 501 GSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQKLTLVILEKLDQTISSQILSLADRAQLNELQSLLCNTLQ 580 (859)
T ss_pred HHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHH
Confidence 44444322 23677889999999999998765433 321111 2222233321111 12222 2344689999
Q ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHhCC------CcchHHHHHHHhh
Q 000599 355 FLSKELLGDFEACAEMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNCK------AVRVLPRIADCAK 415 (1400)
Q Consensus 355 ~La~~Lg~~f~~~a~~~lp~Ll~~~~~-~kkvi~~sa~~al~~i~~~~~------~~rll~~i~~~l~ 415 (1400)
.+-..+++++...++.+|..+++.+.. ...++-+.|..++.+++++.+ ++.+.|++..+++
T Consensus 581 ~i~rk~~~~~~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~Lg~~F~kym~~f~pyL~~gL~ 648 (859)
T KOG1241|consen 581 SIIRKVGSDIREVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESLGKGFAKYMPAFKPYLLMGLS 648 (859)
T ss_pred HHHHHccccchhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHhh
Confidence 999999999999999999999999987 456788999999999999875 4677788888874
No 15
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.09 E-value=2e-09 Score=118.77 Aligned_cols=174 Identities=13% Similarity=0.199 Sum_probs=144.6
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHH
Q 000599 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1400)
Q Consensus 286 l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~ 365 (1400)
+.+....| .++||...+++|..|+.+..- +.+.+...|+.++-.+.+.++++||.|.+.||.|++.|++.+++.++
T Consensus 90 l~~~l~~L-~s~dW~~~vdgLn~irrLs~f---h~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~ 165 (334)
T KOG2933|consen 90 LKQALKKL-SSDDWEDKVDGLNSIRRLSEF---HPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSID 165 (334)
T ss_pred HHHHHHHh-chHHHHHHhhhHHHHHHHHhh---hHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444 579999999999999998763 33444456888888999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccc
Q 000599 366 ACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQR 445 (1400)
Q Consensus 366 ~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~ 445 (1400)
...+.++-.|+.+.+..|.+|++.|..+|.+|+.|+.+.++++.|..++ .+.|+.+|+..+..+..++...+..+...-
T Consensus 166 ~~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~~~-~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~ 244 (334)
T KOG2933|consen 166 QELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIPIL-QHSNPRVRAKAALCFSRCVIRLGVLPVLLQ 244 (334)
T ss_pred HHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHHHH-hhhchhhhhhhhccccccceeccccchhhH
Confidence 9999999999999999999999999999999999999999999999998 578999999988877777766654333333
Q ss_pred cHHHHHHHHHHHcCCCChH
Q 000599 446 SADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 446 ~~~~l~~~i~k~l~Da~~e 464 (1400)
....+...+..=..|.=|+
T Consensus 245 ~~~dl~~a~~~~~~d~Lp~ 263 (334)
T KOG2933|consen 245 GSCDLSRAAQEQGSDKLPE 263 (334)
T ss_pred hHHHHHHHHHhhhcccccc
Confidence 4555666666667777766
No 16
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.86 E-value=3e-06 Score=100.00 Aligned_cols=389 Identities=15% Similarity=0.128 Sum_probs=263.8
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHH-hhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~-~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
.+...|.+|-+..|++|..+|.+++++.....+...+.++++.+. ......+.+-...+|--+.+.+-.+|..-..|..
T Consensus 4 ~i~r~ltdKlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~ 83 (675)
T KOG0212|consen 4 SIARGLTDKLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLE 83 (675)
T ss_pred HhhhhhhhHHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHH
Confidence 467789999999999999999999988765555666778888664 4455555555558888888777788887777999
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch------hHHHHHHhhhhhhcCChhHHHH--HHHHHHHHHHhccCcc
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP------TIIVERAGSYAWTHRSWRVREE--FARTVTSAIGLFSATE 153 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p------~~V~e~l~~~~~~~Knpkvr~~--~l~~L~~~l~~fg~~~ 153 (1400)
.++|.++.-++|+..+||--|-+.|-.+++++.. ..+++.+++ ........||.+ .+.-+..-+-.-....
T Consensus 84 ~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~k~~v~~~Fn~iFdvL~k-lsaDsd~~V~~~aeLLdRLikdIVte~~~t 162 (675)
T KOG0212|consen 84 KIVPPVLNCFSDQDSQVRYYACESLYNIAKVAKGEVLVYFNEIFDVLCK-LSADSDQNVRGGAELLDRLIKDIVTESAST 162 (675)
T ss_pred HhhHHHHHhccCccceeeeHhHHHHHHHHHHhccCcccchHHHHHHHHH-HhcCCccccccHHHHHHHHHHHhccccccc
Confidence 9999999999999999999999999999986432 356777766 566666666643 3444433332223335
Q ss_pred hhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcch
Q 000599 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFA 233 (1400)
Q Consensus 154 l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~ 233 (1400)
+++ ..|+|.+-.-+-+.|+.+|-.-..-+-.++...+-.+-.++. ..+.-+...+..
T Consensus 163 FsL-~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~------~~ldGLf~~LsD---------------- 219 (675)
T KOG0212|consen 163 FSL-PEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLP------SLLDGLFNMLSD---------------- 219 (675)
T ss_pred cCH-HHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcch------HHHHHHHHHhcC----------------
Confidence 667 689999999999999999987777666666554444444443 111111111110
Q ss_pred hhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHH
Q 000599 234 ALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLV 313 (1400)
Q Consensus 234 ~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll 313 (1400)
+..|+...-+.....| |++|-
T Consensus 220 --------------------------------------------~s~eVr~~~~t~l~~f---------------L~eI~ 240 (675)
T KOG0212|consen 220 --------------------------------------------SSDEVRTLTDTLLSEF---------------LAEIR 240 (675)
T ss_pred --------------------------------------------CcHHHHHHHHHHHHHH---------------HHHHh
Confidence 0000100000111111 11111
Q ss_pred hcCCC-CchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhH-HHHHHHH
Q 000599 314 LGGAA-DHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVL-VIAESSD 391 (1400)
Q Consensus 314 ~~~~~-~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kk-vi~~sa~ 391 (1400)
..+.. +|+. +..-+...+.....-+...|+..|..+.+..|+.+-++...++..++..+.++-. .+.+.+.
T Consensus 241 s~P~s~d~~~-------~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~ 313 (675)
T KOG0212|consen 241 SSPSSMDYDD-------MINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQ 313 (675)
T ss_pred cCccccCccc-------chhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHH
Confidence 22222 4443 4444555677788888889999999999999999999999999999999887644 3444433
Q ss_pred H---HHHHHHHhC------CCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCC
Q 000599 392 N---CIKTMLRNC------KAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAM 462 (1400)
Q Consensus 392 ~---al~~i~~~~------~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~ 462 (1400)
. -+..++..- .+..++..+...++ +-+...|..+.+|+..+...++.+ +-.+.+.+-..+.+.+.|.+
T Consensus 314 ~~n~~l~~l~s~~~~~~~id~~~ii~vl~~~l~-~~~~~tri~~L~Wi~~l~~~~p~q--l~~h~~~if~tLL~tLsd~s 390 (675)
T KOG0212|consen 314 MVNGLLLKLVSSERLKEEIDYGSIIEVLTKYLS-DDREETRIAVLNWIILLYHKAPGQ--LLVHNDSIFLTLLKTLSDRS 390 (675)
T ss_pred HHHHHHHHHHhhhhhccccchHHHHHHHHHHhh-cchHHHHHHHHHHHHHHHhhCcch--hhhhccHHHHHHHHhhcCch
Confidence 3 334443221 23477888888884 558999999999999999999974 66677889999999999999
Q ss_pred hH---HHHHHHhh-----CCHHHHHHHhhh
Q 000599 463 SE---RSRRLFSS-----FDPAIQRIINEE 484 (1400)
Q Consensus 463 ~e---~A~~l~~~-----l~~~~qk~L~~~ 484 (1400)
.+ .+-.++.. =++.+.|++...
T Consensus 391 d~vvl~~L~lla~i~~s~~~~~~~~fl~sL 420 (675)
T KOG0212|consen 391 DEVVLLALSLLASICSSSNSPNLRKFLLSL 420 (675)
T ss_pred hHHHHHHHHHHHHHhcCcccccHHHHHHHH
Confidence 99 33333332 355667777664
No 17
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.80 E-value=3.6e-06 Score=100.75 Aligned_cols=423 Identities=16% Similarity=0.174 Sum_probs=254.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHH--hhhhhHhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFKLH 79 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~--l~~~~~~~ 79 (1400)
|.++..-.+.+-.+|...-..|.-+++--..++ .+.++.+++.......|.|..|+..|+|+|..+++. +...+.+|
T Consensus 218 e~lFalanD~~~eVRk~vC~alv~Llevr~dkl-~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqpi~~~~L~p~ 296 (885)
T KOG2023|consen 218 EILFALANDEDPEVRKNVCRALVFLLEVRPDKL-VPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQPICKEVLQPY 296 (885)
T ss_pred HHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhc-ccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCcCcHHHHHHH
Confidence 344555567888999999999998887755443 356778888888889999999999999999999976 56678999
Q ss_pred hhhhHHHHHHHhC--CCC------------------------------------------------------hhHHHHHH
Q 000599 80 FNALVPAVVERLG--DAK------------------------------------------------------QPVRDAAR 103 (1400)
Q Consensus 80 ~~~ilp~LleKLg--D~K------------------------------------------------------~~vre~a~ 103 (1400)
+..++|.|+..+. |-. -.+|.-..
T Consensus 297 l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~~dWNLRkCSA 376 (885)
T KOG2023|consen 297 LDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAFSDWNLRKCSA 376 (885)
T ss_pred HHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccccccccccHhhccH
Confidence 9999999987652 110 13454455
Q ss_pred HHHHHHHHHhchhHHHHHHhh---hhhhcCChhHHHHHHHHHHHHHHhccCcc-hhhhhhhHHHHHHhhCCCChhHHHHH
Q 000599 104 RLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLFSATE-LTLQRAILPPILQMLNDPNPGVREAA 179 (1400)
Q Consensus 104 ~~L~~l~e~~~p~~V~e~l~~---~~~~~Knpkvr~~~l~~L~~~l~~fg~~~-l~l~k~~lp~l~~~L~d~n~~VR~aA 179 (1400)
++|..+.... ++.+++.+++ .-+.|.+|+||+..+..|...-+ =+.++ .+....++|+++.+|.|..+-||..+
T Consensus 377 AaLDVLanvf-~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAE-GcM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 377 AALDVLANVF-GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAE-GCMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHHhh-HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHH-HHhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 5555555443 4566666654 35778999999998887754332 12222 22225799999999999999999999
Q ss_pred HHHHHHHHhhhChhHH-HhhhcCCCChhhHHHHHHHH-HhhCCCCCCCCCCCCcchhhhhccccCCCCCCCcccc-cccc
Q 000599 180 ILCIEEMYTYAGPQFR-DELHRHNLPNSMVKDINARL-ERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAK-SSTR 256 (1400)
Q Consensus 180 ~~~l~~l~~~~G~~l~-~~L~~~~l~~~~l~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~-ss~~ 256 (1400)
+++|...-+|+-..=. +++. |- |..|..++ ++.+ . +..+. ++-.
T Consensus 455 CWTLsRys~wv~~~~~~~~f~-----pv-L~~ll~~llD~NK-------------~--------------VQEAAcsAfA 501 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRDEYFK-----PV-LEGLLRRLLDSNK-------------K--------------VQEAACSAFA 501 (885)
T ss_pred eeeHhhhhhhHhcCChHhhhH-----HH-HHHHHHHHhcccH-------------H--------------HHHHHHHHHH
Confidence 9999998888653211 2221 11 22222211 1110 0 00000 0000
Q ss_pred ccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHH
Q 000599 257 ETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV--PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPL 334 (1400)
Q Consensus 257 ~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~--~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L 334 (1400)
.--... .++.|| =++..++.+...|. ..+|-..=-+|+.+|-.-+- .+.+.+.+ +.-|+.+|
T Consensus 502 tleE~A----~~eLVp--------~l~~IL~~l~~af~kYQ~KNLlILYDAIgtlAdsvg-~~Ln~~~Y---iqiLmPPL 565 (885)
T KOG2023|consen 502 TLEEEA----GEELVP--------YLEYILDQLVFAFGKYQKKNLLILYDAIGTLADSVG-HALNKPAY---IQILMPPL 565 (885)
T ss_pred HHHHhc----cchhHH--------HHHHHHHHHHHHHHHHhhcceehHHHHHHHHHHHHH-HhcCcHHH---HHHhccHH
Confidence 000000 011222 12233333444442 34555566777777766553 23444554 33455666
Q ss_pred Hhh---hcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHH----------------HHHHHH
Q 000599 335 STQ---LSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAES----------------SDNCIK 395 (1400)
Q Consensus 335 ~~~---l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~s----------------a~~al~ 395 (1400)
..- ++|....+. =-++|+..+|.+||..|-||+..+..--+..+..+.+.+... +..-+.
T Consensus 566 i~KW~~lsd~DKdLf-PLLEClSsia~AL~~gF~P~~~~Vy~Rc~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~S 644 (885)
T KOG2023|consen 566 IEKWELLSDSDKDLF-PLLECLSSIASALGVGFLPYAQPVYQRCFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLS 644 (885)
T ss_pred HHHHHhcCcccchHH-HHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHh
Confidence 543 456665554 347899999999999999999888775555554333222221 112233
Q ss_pred HHHHhCC--------CcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH---
Q 000599 396 TMLRNCK--------AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE--- 464 (1400)
Q Consensus 396 ~i~~~~~--------~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e--- 464 (1400)
.+++..+ ...++..+..++ .+..|++|+-|+.+|.-+-..+..+ +.... .+.+.-....=|++
T Consensus 645 GLaegLg~~ie~Lva~snl~~lll~C~-~D~~peVRQS~FALLGDltk~c~~~--v~p~~---~~fl~~lg~Nl~~~~is 718 (885)
T KOG2023|consen 645 GLAEGLGSHIEPLVAQSNLLDLLLQCL-QDEVPEVRQSAFALLGDLTKACFEH--VIPNL---ADFLPILGANLNPENIS 718 (885)
T ss_pred HHHHHhhhchHHHhhhccHHHHHHHHh-ccCChHHHHHHHHHHHHHHHHHHHh--ccchH---HHHHHHHhhcCChhhch
Confidence 3333221 234666777777 6889999999999998877766442 33343 33333333555666
Q ss_pred HHHHHHhhCCHHHHHHHhh
Q 000599 465 RSRRLFSSFDPAIQRIINE 483 (1400)
Q Consensus 465 ~A~~l~~~l~~~~qk~L~~ 483 (1400)
.+....|.++.-.-|+..+
T Consensus 719 v~nNA~WAiGeia~k~g~~ 737 (885)
T KOG2023|consen 719 VCNNAIWAIGEIALKMGLK 737 (885)
T ss_pred HHHHHHHHHHHHHHHhchh
Confidence 5555666665544444433
No 18
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.75 E-value=0.0033 Score=81.21 Aligned_cols=160 Identities=19% Similarity=0.276 Sum_probs=124.1
Q ss_pred cCCChHHHHHHHHHHHHHHhhcc---ccccc---cHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhhcCh-------h
Q 000599 1222 DDADSSVREVALSLINEMLKNQK---DVMED---SVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDP-------F 1287 (1400)
Q Consensus 1222 ~d~~~~vR~~aL~~L~~l~~~~~---~~~~~---~~e~~l~~ll~~-~~D~~k~V~~aA~~al~~i~~~~~p-------~ 1287 (1400)
++-|..-|+.|+.+|..|+..+. ..=++ -++.+|..|-.. .||+...+... ..++..++..+.- +
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd~~~~~as~-Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGDSTRVVASD-IVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhcccHHHHHHHH-HHHHHHHHHHHhccccHHHHH
Confidence 65566688889999998884321 11112 345555555554 46765555554 6677777654332 3
Q ss_pred hHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhcc
Q 000599 1288 RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFL 1366 (1400)
Q Consensus 1288 ~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lg-e~~~ 1366 (1400)
++|..++-+|.+++-.+..+||.++..++...+..-+..|++.|||.|..-.+|.+..+|++++.-+-.+...|| ++++
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLirkfg~~eLe 906 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLIRKFGAEELE 906 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 578888888889888899999999999999999888999999999999999999999999999999999999999 6999
Q ss_pred hhhhhhcHHHHHHHHHHHHh
Q 000599 1367 PYLERLNSTQLRLVTIYANR 1386 (1400)
Q Consensus 1367 p~l~~L~~s~~kll~~yi~r 1386 (1400)
+|+| ..++|+|.- |.|
T Consensus 907 ~~~p---ee~~klL~n-IRK 922 (1176)
T KOG1248|consen 907 SFLP---EEDMKLLTN-IRK 922 (1176)
T ss_pred hhCH---HHHHHHHHH-HHH
Confidence 9999 677777765 443
No 19
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.67 E-value=3.9e-07 Score=100.99 Aligned_cols=182 Identities=19% Similarity=0.235 Sum_probs=151.5
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ 82 (1400)
..+.+|.++||-...+|++.+..+..-..+.+ ...+..++=.+.+-+++.+..|...|+.++..++..+.+.+......
T Consensus 92 ~~l~~L~s~dW~~~vdgLn~irrLs~fh~e~l-~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~ 170 (334)
T KOG2933|consen 92 QALKKLSSDDWEDKVDGLNSIRRLSEFHPESL-NPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDD 170 (334)
T ss_pred HHHHHhchHHHHHHhhhHHHHHHHHhhhHHHH-HHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56889999999999999999998887655432 23355566566788999999999999999999999998888889999
Q ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchh--hhhhh
Q 000599 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT--LQRAI 160 (1400)
Q Consensus 83 ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~--l~k~~ 160 (1400)
++-.|+-|-++.|..||+.|.++|.+|....+|+.++..|+. +.+|.||++|.-...++..++...|...+. +.+..
T Consensus 171 lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp~~~L~~L~~-~~~~~n~r~r~~a~~~~~~~v~rl~v~~~~~~~~~dl 249 (334)
T KOG2933|consen 171 LVTQLLHKASQDNRFVREDAEKALVAMVNHVTPQKLLRKLIP-ILQHSNPRVRAKAALCFSRCVIRLGVLPVLLQGSCDL 249 (334)
T ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHhccChHHHHHHHHH-HHhhhchhhhhhhhccccccceeccccchhhHhHHHH
Confidence 999999999999999999999999999999999999999998 799999999998888887777777654433 22455
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHH
Q 000599 161 LPPILQMLNDPNPGVREAAILCIEEM 186 (1400)
Q Consensus 161 lp~l~~~L~d~n~~VR~aA~~~l~~l 186 (1400)
++.+-.-+.|.=+.+|++|.-.+...
T Consensus 250 ~~a~~~~~~d~Lp~~~~~a~~~~~~~ 275 (334)
T KOG2933|consen 250 SRAAQEQGSDKLPELREAARFVRLEL 275 (334)
T ss_pred HHHHHhhhcccccccccchhHHHHhH
Confidence 66666777888888888777665554
No 20
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.53 E-value=5.1e-05 Score=98.63 Aligned_cols=386 Identities=18% Similarity=0.228 Sum_probs=260.0
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHH
Q 000599 783 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPH 862 (1400)
Q Consensus 783 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~ 862 (1400)
-++-|.-|+-+-.++..+.++.... ..+.+++|+-.|.++=.||+.||-..--++-..+|.--+.....|+..++-.
T Consensus 967 h~A~wnSk~GaAfGf~~i~~~a~~k---l~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~e 1043 (1702)
T KOG0915|consen 967 HNATWNSKKGAAFGFGAIAKQAGEK---LEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDE 1043 (1702)
T ss_pred hhchhhcccchhhchHHHHHHHHHh---hhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence 3889999999999999999876543 3368999999999988899999999999999999999999999999999999
Q ss_pred HHHhhCCchhhhHHHHHHHHHHHhccCCchh-------hHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCc
Q 000599 863 VFSRLIDPKELVRQPCSTTLDIVSKTYSVDS-------LLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNL 935 (1400)
Q Consensus 863 L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~-------~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~ 935 (1400)
|+.+|++..=-||+++-.||.-+...-|.+. +|.+++|.++|-|- -||.+.=.+. ..|.+..+-.++..+.
T Consensus 1044 LL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKE-sVR~aa~~~~-~~lsKl~vr~~d~~~~ 1121 (1702)
T KOG0915|consen 1044 LLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKE-SVREAADKAA-RALSKLCVRICDVTNG 1121 (1702)
T ss_pred HHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHH-HHHHHHHhhhcccCCc
Confidence 9999999998999998888877776666655 45556666665432 3455433322 2344433433444555
Q ss_pred chHHHHHHhhcccccC-----CCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHHhhhcchhHHHHHHHh
Q 000599 936 GILKLWLAKLTPLVHD-----KNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTPRIEVDLMNYL 1010 (1400)
Q Consensus 936 ~~~~~~l~~i~~l~~d-----ks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l~~~~~~~~~~~~~~l 1010 (1400)
..-+.++.-+.|.+-| +-.+||+.++++++.|-++.|.. +.-++..| .-.|-..+.+.+..+.+||
T Consensus 1122 ~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~-lkP~~~~L--------Ip~ll~~~s~lE~~vLnYl 1192 (1702)
T KOG0915|consen 1122 AKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKE-LKPHFPKL--------IPLLLNAYSELEPQVLNYL 1192 (1702)
T ss_pred ccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhh-hcchhhHH--------HHHHHHHccccchHHHHHH
Confidence 5566677777775443 55799999999999999988663 22222211 1111112223333333333
Q ss_pred hhhhhhcccCCCCCCCCCCCCCCccccccccCCCCCCCCCCCCCCCCCCCCCCcccchhhcccccCCCCCCccchHHHhh
Q 000599 1011 QSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTGSMGHAMSDETKENLYQ 1090 (1400)
Q Consensus 1011 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~ 1090 (1400)
...... ++ .| ..+
T Consensus 1193 s~r~~~--------------------------------------------------~e----------------~e-alD 1205 (1702)
T KOG0915|consen 1193 SLRLIN--------------------------------------------------IE----------------TE-ALD 1205 (1702)
T ss_pred HHhhhh--------------------------------------------------hH----------------HH-HHH
Confidence 211000 00 00 000
Q ss_pred hccCCCCcCCCccccCCCCCCCCCCCCCCCccccccccccccccccCCCCCCCCCcccCCCCCCccccccCCCCCCCCHH
Q 000599 1091 NFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKPSAIKTNSLTDAGPSIP 1170 (1400)
Q Consensus 1091 ~~~~~~~~~~~~~~~~~~~s~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~i~ 1170 (1400)
+.| ... .+ .++
T Consensus 1206 t~R----------------------------~s~--------------------------------ak------ssp--- 1216 (1702)
T KOG0915|consen 1206 TLR----------------------------ASA--------------------------------AK------SSP--- 1216 (1702)
T ss_pred HHH----------------------------Hhh--------------------------------hc------CCc---
Confidence 000 000 00 000
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhccccccc
Q 000599 1171 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMED 1249 (1400)
Q Consensus 1171 ~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~-~~~vR~~aL~~L~~l~~~~~~~~~~ 1249 (1400)
-++.|..+++.-+.. .+.++...+.+.+..+ .-..|..|-.++.-|.+..+-.+.|
T Consensus 1217 -------------------mmeTi~~ci~~iD~~----vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP 1273 (1702)
T KOG0915|consen 1217 -------------------MMETINKCINYIDIS----VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP 1273 (1702)
T ss_pred -------------------HHHHHHHHHHhhhHH----HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc
Confidence 112222233322222 2455555666666542 3446667778888899999999999
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---CCchhhHhHHHHHHHHHHhhcCHHHHHh
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQEELMA 1326 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~~~l~~ 1326 (1400)
|..-+|-.++-..+|....|+++-..|+..++..-.|.++.+.+...+. -+....+-.++..+-. +-.+..+.|..
T Consensus 1274 ~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn 1352 (1702)
T KOG0915|consen 1274 YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKN 1352 (1702)
T ss_pred chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHh
Confidence 9999999999999999999999999999999999999988777765553 1222222445666666 66888899999
Q ss_pred hhhhhHHHHHHHhcCC
Q 000599 1327 QLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1327 ~l~~liP~l~~~~~d~ 1342 (1400)
|...|+|.+.=++++.
T Consensus 1353 ~asaILPLiFLa~~ee 1368 (1702)
T KOG0915|consen 1353 YASAILPLIFLAMHEE 1368 (1702)
T ss_pred hHHHHHHHHHHHHhHH
Confidence 9999999999999877
No 21
>PTZ00429 beta-adaptin; Provisional
Probab=98.49 E-value=0.00072 Score=87.15 Aligned_cols=295 Identities=13% Similarity=0.127 Sum_probs=168.2
Q ss_pred HHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchh-----H
Q 000599 43 VDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-----I 117 (1400)
Q Consensus 43 v~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~-----~ 117 (1400)
+..+.+-+.|.|+.+.-.||.+++.+- ....+..+++.|..-+.|..+-||..|.-++..++... |+ .
T Consensus 107 INtl~KDl~d~Np~IRaLALRtLs~Ir------~~~i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~-pelv~~~~ 179 (746)
T PTZ00429 107 VNTFLQDTTNSSPVVRALAVRTMMCIR------VSSVLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDD-MQLFYQQD 179 (746)
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHcCC------cHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-cccccccc
Confidence 344456667788888888888777653 23456667777787789999999999999999988642 32 3
Q ss_pred HHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhh-------------------------------------hh
Q 000599 118 IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQR-------------------------------------AI 160 (1400)
Q Consensus 118 V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k-------------------------------------~~ 160 (1400)
.++.+.+ .+..+||.|...++..|.++.+..+ ..+.+.. .+
T Consensus 180 ~~~~L~~-LL~D~dp~Vv~nAl~aL~eI~~~~~-~~l~l~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~~y~P~~~~e~~~i 257 (746)
T PTZ00429 180 FKKDLVE-LLNDNNPVVASNAAAIVCEVNDYGS-EKIESSNEWVNRLVYHLPECNEWGQLYILELLAAQRPSDKESAETL 257 (746)
T ss_pred hHHHHHH-HhcCCCccHHHHHHHHHHHHHHhCc-hhhHHHHHHHHHHHHHhhcCChHHHHHHHHHHHhcCCCCcHHHHHH
Confidence 4566665 7889999998888887766543221 1111112 34
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccc
Q 000599 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTA 240 (1400)
Q Consensus 161 lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 240 (1400)
+..+...|.+.|+.|-=+|..++..+..... +..++.+..++....-...+.+ ...+|..-.
T Consensus 258 l~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~-------------~~~~~~~~~rl~~pLv~L~ss~-~eiqyvaLr---- 319 (746)
T PTZ00429 258 LTRVLPRMSHQNPAVVMGAIKVVANLASRCS-------------QELIERCTVRVNTALLTLSRRD-AETQYIVCK---- 319 (746)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHhcCcCC-------------HHHHHHHHHHHHHHHHHhhCCC-ccHHHHHHH----
Confidence 4444555555555555555555554432211 1111111111111000000000 000010000
Q ss_pred cCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhc---CCCCCHHHHHHHHHHHHHHHhcCC
Q 000599 241 SFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTL---VPDKDWSVRIAAMQRVEGLVLGGA 317 (1400)
Q Consensus 241 s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l---~~~~dW~~R~~AL~~l~~ll~~~~ 317 (1400)
.+.-+-... .+ .|..-.+.| .+|.+ ..|...|+.|..++..
T Consensus 320 -----------------------------~I~~i~~~~-P~---lf~~~~~~Ff~~~~Dp~-yIK~~KLeIL~~Lane-- 363 (746)
T PTZ00429 320 -----------------------------NIHALLVIF-PN---LLRTNLDSFYVRYSDPP-FVKLEKLRLLLKLVTP-- 363 (746)
T ss_pred -----------------------------HHHHHHHHC-HH---HHHHHHHhhhcccCCcH-HHHHHHHHHHHHHcCc--
Confidence 000000000 01 111122222 13444 4799999999888653
Q ss_pred CCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000599 318 ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTM 397 (1400)
Q Consensus 318 ~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i 397 (1400)
.+ +..++..|...+.|....++++++..|+.+|.. |...++.++..|++.+.++..++. .+...+..|
T Consensus 364 ---~N----v~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k----~~~~a~~cV~~Ll~ll~~~~~~v~-e~i~vik~I 431 (746)
T PTZ00429 364 ---SV----APEILKELAEYASGVDMVFVVEVVRAIASLAIK----VDSVAPDCANLLLQIVDRRPELLP-QVVTAAKDI 431 (746)
T ss_pred ---cc----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHh----ChHHHHHHHHHHHHHhcCCchhHH-HHHHHHHHH
Confidence 23 334556666677889999999999999999855 466788888888888877666655 467888888
Q ss_pred HHhCCCcchHHHHHH
Q 000599 398 LRNCKAVRVLPRIAD 412 (1400)
Q Consensus 398 ~~~~~~~rll~~i~~ 412 (1400)
++..+-..+++.+..
T Consensus 432 lrkyP~~~il~~L~~ 446 (746)
T PTZ00429 432 VRKYPELLMLDTLVT 446 (746)
T ss_pred HHHCccHHHHHHHHH
Confidence 876554345555554
No 22
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.48 E-value=3.9e-05 Score=97.33 Aligned_cols=354 Identities=18% Similarity=0.160 Sum_probs=215.4
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHH-HHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTS-LVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~-lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
.+...+.|.+|-.|..|+..+.+++...+.. +.. +++.+...+.|.|+.|...|+.++..+ +.-.+.+...+.
T Consensus 118 ~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~-----~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~ 191 (526)
T PF01602_consen 118 DVIKLLSDPSPYVRKKAALALLKIYRKDPDL-----VEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIP 191 (526)
T ss_dssp HHHHHHHSSSHHHHHHHHHHHHHHHHHCHCC-----HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHH
T ss_pred HHHHHhcCCchHHHHHHHHHHHHHhccCHHH-----HHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHH
Confidence 4566777888888888888888888764332 222 566677777888888888888888777 211222223334
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hch--hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhh
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEV--SSP--TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQ 157 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~--~~p--~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~ 157 (1400)
.++..|...+++..+-++-.+.++|..++.. ..+ ..+++.+.. .+.+.++-|.-+++..+...... .. +.
T Consensus 192 ~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~~~~~~~~i~~l~~-~l~s~~~~V~~e~~~~i~~l~~~----~~-~~ 265 (526)
T PF01602_consen 192 KLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPEDADKNRIIEPLLN-LLQSSSPSVVYEAIRLIIKLSPS----PE-LL 265 (526)
T ss_dssp HHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHSSS----HH-HH
T ss_pred HHHHHhhhcccccchHHHHHHHHHHHhcccCChhhhhHHHHHHHHHH-HhhccccHHHHHHHHHHHHhhcc----hH-HH
Confidence 4444444444777777776666666666532 112 345666665 66777888888777777632211 11 22
Q ss_pred hhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhh
Q 000599 158 RAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEI 237 (1400)
Q Consensus 158 k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~ 237 (1400)
..+++.+.++|.+++++||-.+..++..+.....+.+. ..
T Consensus 266 ~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~--------------------------------------- 305 (526)
T PF01602_consen 266 QKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQ--------------------------------------- 305 (526)
T ss_dssp HHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-TH---------------------------------------
T ss_pred HhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hh---------------------------------------
Confidence 56778888888888888888777777666433211000 00
Q ss_pred ccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCC
Q 000599 238 KTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGA 317 (1400)
Q Consensus 238 r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~ 317 (1400)
.-+...+..+.|=..|..+|+-|..++..
T Consensus 306 -------------------------------------------------~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~-- 334 (526)
T PF01602_consen 306 -------------------------------------------------SLILFFLLYDDDPSIRKKALDLLYKLANE-- 334 (526)
T ss_dssp -------------------------------------------------HHHHHHHHCSSSHHHHHHHHHHHHHH--H--
T ss_pred -------------------------------------------------hhhhheecCCCChhHHHHHHHHHhhcccc--
Confidence 00111112344455688888888877642
Q ss_pred CCchhHHHhHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHH
Q 000599 318 ADHPCFRGLLKQLVGPLSTQLSDR-RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKT 396 (1400)
Q Consensus 318 ~~~~~f~~~L~~L~~~L~~~l~Dl-rs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~ 396 (1400)
.+ +..++..|...+.+. ...+.++++..|+.++......+ +.++..|++.+......+...+...+..
T Consensus 335 ---~n----~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~~~----~~~v~~l~~ll~~~~~~~~~~~~~~i~~ 403 (526)
T PF01602_consen 335 ---SN----VKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPPDA----EWYVDTLLKLLEISGDYVSNEIINVIRD 403 (526)
T ss_dssp ---HH----HHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGSSH----HHHHHHHHHHHHCTGGGCHCHHHHHHHH
T ss_pred ---cc----hhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCchH----HHHHHHHHHhhhhccccccchHHHHHHH
Confidence 23 334555555566555 44588999999999988775544 4455666666766666778888999999
Q ss_pred HHHhCCC--cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH-------HHH
Q 000599 397 MLRNCKA--VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE-------RSR 467 (1400)
Q Consensus 397 i~~~~~~--~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e-------~A~ 467 (1400)
++.+.+- ..++..+...+.+-+.+.+++.++-.+...-+.... .. ....+.+.+.+...+.+++ ..-
T Consensus 404 ll~~~~~~~~~~l~~L~~~l~~~~~~~~~~~~~wilGEy~~~~~~---~~-~~~~~~~~l~~~~~~~~~~vk~~ilt~~~ 479 (526)
T PF01602_consen 404 LLSNNPELREKILKKLIELLEDISSPEALAAAIWILGEYGELIEN---TE-SAPDILRSLIENFIEESPEVKLQILTALA 479 (526)
T ss_dssp HHHHSTTTHHHHHHHHHHHHTSSSSHHHHHHHHHHHHHHCHHHTT---TT-HHHHHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred HhhcChhhhHHHHHHHHHHHHHhhHHHHHHHHHhhhcccCCcccc---cc-cHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9988654 367888988886556778765554444433322221 11 3455666666666666665 455
Q ss_pred HHHhhCC
Q 000599 468 RLFSSFD 474 (1400)
Q Consensus 468 ~l~~~l~ 474 (1400)
+++...+
T Consensus 480 Kl~~~~~ 486 (526)
T PF01602_consen 480 KLFKRNP 486 (526)
T ss_dssp HHHHHSC
T ss_pred HHHhhCC
Confidence 5565554
No 23
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=98.46 E-value=1.4e-05 Score=93.06 Aligned_cols=214 Identities=19% Similarity=0.227 Sum_probs=158.5
Q ss_pred HHHHHhcCC-CHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhcc-CCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 3 EALELARAK-DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKD-NNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 3 ~~l~~l~s~-~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~D-sN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
+.+..+... .-.+|.+|+.+|..++-.....+=...+..++..+...+.| .++..-..||.+|..+++.-...|..+.
T Consensus 290 ~~l~~~~g~e~a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~Dst 369 (516)
T KOG2956|consen 290 DLLKEISGSERASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDST 369 (516)
T ss_pred HHHHhccCccchhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchH
Confidence 455566654 77899999999999886643221112245566666778888 7889999999999999988888888888
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcch-hhhhh
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATEL-TLQRA 159 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l-~l~k~ 159 (1400)
...+--+++--.|..+.|-..|.++++.+.....|..-+.-+.+..++...|+. ..++..++..++......+ ++...
T Consensus 370 E~ai~K~Leaa~ds~~~v~~~Aeed~~~~las~~P~~~I~~i~~~Ilt~D~~~~-~~~iKm~Tkl~e~l~~EeL~~ll~d 448 (516)
T KOG2956|consen 370 EIAICKVLEAAKDSQDEVMRVAEEDCLTTLASHLPLQCIVNISPLILTADEPRA-VAVIKMLTKLFERLSAEELLNLLPD 448 (516)
T ss_pred HHHHHHHHHHHhCCchhHHHHHHHHHHHHHHhhCchhHHHHHhhHHhcCcchHH-HHHHHHHHHHHhhcCHHHHHHhhhh
Confidence 888888888888866665555555444444444555444444443444444443 3477788888877665544 33477
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC-hhHHHhhhcCCCChhhHHHHHHHHHhhC
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMYTYAG-PQFRDELHRHNLPNSMVKDINARLERIQ 219 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G-~~l~~~L~~~~l~~~~l~~i~~~~~~~~ 219 (1400)
+.|.+++..+.+...||.+|.=||+.||..+| +.+.++|. +|+.++++.|+=...+..
T Consensus 449 iaP~~iqay~S~SS~VRKtaVfCLVamv~~vG~~~mePhL~--~Lt~sk~~LlqlYinRa~ 507 (516)
T KOG2956|consen 449 IAPCVIQAYDSTSSTVRKTAVFCLVAMVNRVGMEEMEPHLE--QLTSSKLNLLQLYINRAS 507 (516)
T ss_pred hhhHHHHHhcCchHHhhhhHHHhHHHHHHHHhHHhhhhHhh--hccHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999 88999999 899999998887766553
No 24
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=0.00012 Score=86.81 Aligned_cols=306 Identities=16% Similarity=0.129 Sum_probs=214.9
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hchh
Q 000599 39 VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV--SSPT 116 (1400)
Q Consensus 39 ~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~--~~p~ 116 (1400)
+..|+..+...+-+.|+...+.-++.|..+-..-+-.|-.|...++++|+.-|+|+...||.-+..+|..+... .+|.
T Consensus 165 L~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~ 244 (675)
T KOG0212|consen 165 LPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPS 244 (675)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCcc
Confidence 33444444455566777777777777776643333357799999999999999999999999888888887642 3343
Q ss_pred H-----HHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCCh-hHHHHHHHHHHHHHhhh
Q 000599 117 I-----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNP-GVREAAILCIEEMYTYA 190 (1400)
Q Consensus 117 ~-----V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~-~VR~aA~~~l~~l~~~~ 190 (1400)
. +.+-+.. -+...+|.++.-.+.||.+.+..+|...+.+...++-.+.+|+.|... ..++.|...-+.+.+.+
T Consensus 245 s~d~~~~i~vlv~-~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~ 323 (675)
T KOG0212|consen 245 SMDYDDMINVLVP-HLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLLKLV 323 (675)
T ss_pred ccCcccchhhccc-cccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHHHHH
Confidence 3 4444444 577888999999999999999999998887657888999999999887 47777776666655443
Q ss_pred ChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCcccc
Q 000599 191 GPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKL 270 (1400)
Q Consensus 191 G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~ 270 (1400)
+..... ++
T Consensus 324 s~~~~~----------------------------------------------------------------------~~-- 331 (675)
T KOG0212|consen 324 SSERLK----------------------------------------------------------------------EE-- 331 (675)
T ss_pred hhhhhc----------------------------------------------------------------------cc--
Confidence 321100 00
Q ss_pred CCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHH
Q 000599 271 IEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQAC 350 (1400)
Q Consensus 271 v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac 350 (1400)
+ |+...++-+..-| .+..-+.|.++|+=|.-+...... +.+-+...++..|.+.+.|.-.-|+-.++
T Consensus 332 ---i------d~~~ii~vl~~~l-~~~~~~tri~~L~Wi~~l~~~~p~---ql~~h~~~if~tLL~tLsd~sd~vvl~~L 398 (675)
T KOG0212|consen 332 ---I------DYGSIIEVLTKYL-SDDREETRIAVLNWIILLYHKAPG---QLLVHNDSIFLTLLKTLSDRSDEVVLLAL 398 (675)
T ss_pred ---c------chHHHHHHHHHHh-hcchHHHHHHHHHHHHHHHhhCcc---hhhhhccHHHHHHHHhhcCchhHHHHHHH
Confidence 0 0111122222222 345556799999988876654332 34445678999999999999999999999
Q ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHH
Q 000599 351 HLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 430 (1400)
Q Consensus 351 ~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L 430 (1400)
.+++.+++.-. +++...|+..|++++..-+++....+.--|+.++--...+++.-.+.+-+-..-|-..-......|
T Consensus 399 ~lla~i~~s~~---~~~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~e~nl~FAstMV~~L 475 (675)
T KOG0212|consen 399 SLLASICSSSN---SPNLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILEREENLKFASTMVQAL 475 (675)
T ss_pred HHHHHHhcCcc---cccHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 99999887654 225577889999999999999999999999999988888887777766664333333333334444
Q ss_pred HHH
Q 000599 431 LLV 433 (1400)
Q Consensus 431 ~~~ 433 (1400)
..+
T Consensus 476 n~i 478 (675)
T KOG0212|consen 476 NTI 478 (675)
T ss_pred Hhh
Confidence 333
No 25
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.30 E-value=7.6e-05 Score=99.95 Aligned_cols=271 Identities=19% Similarity=0.163 Sum_probs=173.4
Q ss_pred HHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhh
Q 000599 45 CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS 124 (1400)
Q Consensus 45 ~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~ 124 (1400)
.|...|.|.++.|...|+++|..+- -..++|.|+..|.|....||..|.++|..+.+...... .+..
T Consensus 625 ~L~~~L~D~d~~VR~~Av~~L~~~~----------~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~~~---~L~~ 691 (897)
T PRK13800 625 ELAPYLADPDPGVRRTAVAVLTETT----------PPGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPPAP---ALRD 691 (897)
T ss_pred HHHHHhcCCCHHHHHHHHHHHhhhc----------chhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCchH---HHHH
Confidence 4455678999999999999998763 23467888888999999999999999988866433322 2332
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCC
Q 000599 125 YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLP 204 (1400)
Q Consensus 125 ~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~ 204 (1400)
.+++.+|.||..++.+|... +... ...+...|.|+++.||.+|...|+.+-.. +.+...+. +-.
T Consensus 692 -~L~~~d~~VR~~A~~aL~~~----~~~~-------~~~l~~~L~D~d~~VR~~Av~aL~~~~~~--~~l~~~l~--D~~ 755 (897)
T PRK13800 692 -HLGSPDPVVRAAALDVLRAL----RAGD-------AALFAAALGDPDHRVRIEAVRALVSVDDV--ESVAGAAT--DEN 755 (897)
T ss_pred -HhcCCCHHHHHHHHHHHHhh----ccCC-------HHHHHHHhcCCCHHHHHHHHHHHhcccCc--HHHHHHhc--CCC
Confidence 57789999999888877542 2111 12456789999999999999999875211 22333333 111
Q ss_pred hhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHH
Q 000599 205 NSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIR 284 (1400)
Q Consensus 205 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~ 284 (1400)
+.........+... +..+ + .
T Consensus 756 ~~VR~~aa~aL~~~-------------------------------------------~~~~-------~----------~ 775 (897)
T PRK13800 756 REVRIAVAKGLATL-------------------------------------------GAGG-------A----------P 775 (897)
T ss_pred HHHHHHHHHHHHHh-------------------------------------------cccc-------c----------h
Confidence 11111111111100 0000 0 0
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhH
Q 000599 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1400)
Q Consensus 285 ~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f 364 (1400)
.+..+. .+..+.||..|..|+..|..+-.. +. +...+...+.|..-.|-..|...|+.+.
T Consensus 776 ~~~~L~-~ll~D~d~~VR~aA~~aLg~~g~~-----~~-------~~~~l~~aL~d~d~~VR~~Aa~aL~~l~------- 835 (897)
T PRK13800 776 AGDAVR-ALTGDPDPLVRAAALAALAELGCP-----PD-------DVAAATAALRASAWQVRQGAARALAGAA------- 835 (897)
T ss_pred hHHHHH-HHhcCCCHHHHHHHHHHHHhcCCc-----ch-------hHHHHHHHhcCCChHHHHHHHHHHHhcc-------
Confidence 011222 223567899999999988755210 11 2233555677777777777777776542
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHH
Q 000599 365 EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYAL 431 (1400)
Q Consensus 365 ~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~ 431 (1400)
....++.|+..+.|....||..+..+|..+ -..+...+.|...+ ++.++.+|+++...|.
T Consensus 836 ---~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~---~~~~~a~~~L~~al-~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 836 ---ADVAVPALVEALTDPHLDVRKAAVLALTRW---PGDPAARDALTTAL-TDSDADVRAYARRALA 895 (897)
T ss_pred ---ccchHHHHHHHhcCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHH-hCCCHHHHHHHHHHHh
Confidence 233558888888999999999888888775 23456777888787 5778999999887764
No 26
>PTZ00429 beta-adaptin; Provisional
Probab=98.30 E-value=0.0013 Score=84.73 Aligned_cols=366 Identities=13% Similarity=0.078 Sum_probs=227.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
.++-+.|.+.+-..|.+|+..+..++..+. ++..++-.+.+.+...|..+-..+.-.|..+++.- ...+-
T Consensus 35 ~ELr~~L~s~~~~~kk~alKkvIa~mt~G~------DvS~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~----pelal 104 (746)
T PTZ00429 35 AELQNDLNGTDSYRKKAAVKRIIANMTMGR------DVSYLFVDVVKLAPSTDLELKKLVYLYVLSTARLQ----PEKAL 104 (746)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHCCC------CchHHHHHHHHHhCCCCHHHHHHHHHHHHHHcccC----hHHHH
Confidence 356677888888889999999988876542 22234333444667777777777766666665321 12355
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhH
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAIL 161 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~l 161 (1400)
.+++.+..-|.|.++.||..|..+|..+....-.+.++..+.+ ++.+++|-||..++.++..+...+.. .+.- ..++
T Consensus 105 LaINtl~KDl~d~Np~IRaLALRtLs~Ir~~~i~e~l~~~lkk-~L~D~~pYVRKtAalai~Kly~~~pe-lv~~-~~~~ 181 (746)
T PTZ00429 105 LAVNTFLQDTTNSSPVVRALAVRTMMCIRVSSVLEYTLEPLRR-AVADPDPYVRKTAAMGLGKLFHDDMQ-LFYQ-QDFK 181 (746)
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCcc-cccc-cchH
Confidence 6788888889999999999999988876543223456666665 89999999999999999887665442 2222 3688
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhcccc
Q 000599 162 PPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTAS 241 (1400)
Q Consensus 162 p~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s 241 (1400)
+.+.++|.|+|+.|...|..+|.++...-+..+.-.. ..+..+...+.+.. + .....
T Consensus 182 ~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~l~l~~-------~~~~~Ll~~L~e~~------E-------W~Qi~--- 238 (746)
T PTZ00429 182 KDLVELLNDNNPVVASNAAAIVCEVNDYGSEKIESSN-------EWVNRLVYHLPECN------E-------WGQLY--- 238 (746)
T ss_pred HHHHHHhcCCCccHHHHHHHHHHHHHHhCchhhHHHH-------HHHHHHHHHhhcCC------h-------HHHHH---
Confidence 9999999999999999999999999765443321100 00111111111100 0 00000
Q ss_pred CCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCch
Q 000599 242 FNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHP 321 (1400)
Q Consensus 242 ~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~ 321 (1400)
. -..... ..| .+..+..+.++.+.+.|.. .|=-.-.+|++-+..+.... .+
T Consensus 239 I--L~lL~~-------------------y~P----~~~~e~~~il~~l~~~Lq~-~N~AVVl~Aik~il~l~~~~---~~ 289 (746)
T PTZ00429 239 I--LELLAA-------------------QRP----SDKESAETLLTRVLPRMSH-QNPAVVMGAIKVVANLASRC---SQ 289 (746)
T ss_pred H--HHHHHh-------------------cCC----CCcHHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHhcCcC---CH
Confidence 0 000000 000 0123444556666666643 45566677776665553211 12
Q ss_pred hHH-HhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHh
Q 000599 322 CFR-GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRN 400 (1400)
Q Consensus 322 ~f~-~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~ 400 (1400)
.++ +.+..+..++... ......+.--++..|..|...-..-|.++.+. ++-+..|..- |+......|..++..
T Consensus 290 ~~~~~~~~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P~lf~~~~~~----Ff~~~~Dp~y-IK~~KLeIL~~Lane 363 (746)
T PTZ00429 290 ELIERCTVRVNTALLTL-SRRDAETQYIVCKNIHALLVIFPNLLRTNLDS----FYVRYSDPPF-VKLEKLRLLLKLVTP 363 (746)
T ss_pred HHHHHHHHHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCHHHHHHHHHh----hhcccCCcHH-HHHHHHHHHHHHcCc
Confidence 332 2233344444433 23333455556667777777666666665444 3445566664 677778888888877
Q ss_pred CCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCC
Q 000599 401 CKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD 439 (1400)
Q Consensus 401 ~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~ 439 (1400)
.....++..|...+ ++-....++.+..-+..+-..++.
T Consensus 364 ~Nv~~IL~EL~eYa-~d~D~ef~r~aIrAIg~lA~k~~~ 401 (746)
T PTZ00429 364 SVAPEILKELAEYA-SGVDMVFVVEVVRAIASLAIKVDS 401 (746)
T ss_pred ccHHHHHHHHHHHh-hcCCHHHHHHHHHHHHHHHHhChH
Confidence 77889999999888 577899999999999888877764
No 27
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.29 E-value=0.028 Score=69.07 Aligned_cols=144 Identities=13% Similarity=0.109 Sum_probs=92.8
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-------hHHHhhhhhc
Q 000599 1225 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLL 1297 (1400)
Q Consensus 1225 ~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l 1297 (1400)
+..|....|..|..|++.-+..-..|+-.+.|.|-+++.|-..+-+..|..+++.|+-.++-. .++++|-|++
T Consensus 1008 e~nVQnGVLkalsf~FeyigemskdYiyav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNI 1087 (1172)
T KOG0213|consen 1008 EANVQNGVLKALSFMFEYIGEMSKDYIYAVTPLLEDALMDRDLVHRQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNI 1087 (1172)
T ss_pred hhHHHHhHHHHHHHHHHHHHHHhhhHHHHhhHHHHHhhccccHHHHHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhh
Confidence 334555667777777777777778899999999999999998888999999999998664432 2444444544
Q ss_pred cCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-hhcchhhhhhcHHH
Q 000599 1298 VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-KAFLPYLERLNSTQ 1376 (1400)
Q Consensus 1298 ~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lg-e~~~p~l~~L~~s~ 1376 (1400)
-...--.-..-.+++.-+-..+++- .++-.+.+++.|+..-|||.--..+-.+| |++ +.+.++++....-+
T Consensus 1088 le~sPhviqa~~e~~eg~r~~Lg~~-------~~~~Y~~QGLFHParkVR~~yw~vyn~my-~~~~dalv~~ypv~ed~p 1159 (1172)
T KOG0213|consen 1088 LETSPHVIQAFDEAMEGLRVALGPQ-------AMLKYCLQGLFHPARKVRKRYWTVYNSMY-HGSQDALVACYPVEEDDP 1159 (1172)
T ss_pred cCCChHHHHHHHHHHHHHHHHhchH-------HHHHHHHHhccCcHHHHHHHHHHHHHhHh-hcccchhhhccccCCCCc
Confidence 2211111112233333444344433 34677899999999999986444433333 444 36778888766543
No 28
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=98.21 E-value=0.0011 Score=80.67 Aligned_cols=369 Identities=16% Similarity=0.152 Sum_probs=222.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc-CChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKS-LTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~-~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
-++..+++..-+.|.-.++.+.+++...+.. ++....+.+++.+...+.+-...+. -.|..++.++..++...++|..
T Consensus 720 R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~-vml~gfg~V~~~lg~r~kpylp 798 (1172)
T KOG0213|consen 720 RVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDS-VMLLGFGTVVNALGGRVKPYLP 798 (1172)
T ss_pred HHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchh-hhhhhHHHHHHHHhhccccchH
Confidence 3456677778888888888888888776532 3444456788888776654322222 3355566677778889999999
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHH---Hhc--------------------h---hHHHH---------------
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLME---VSS--------------------P---TIIVE--------------- 120 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e---~~~--------------------p---~~V~e--------------- 120 (1400)
.++..++-+|..+.+.||+.|.+++-.++. .|. | ..|+.
T Consensus 799 qi~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~ 878 (1172)
T KOG0213|consen 799 QICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMT 878 (1172)
T ss_pred HHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccC
Confidence 999999999999999999998887766542 121 1 01111
Q ss_pred --------HHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHH---HHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 121 --------RAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPI---LQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 121 --------~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l---~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
+|. ..+++|.-||.+.|+.++. .|..-|+..++. +.++..+ +.+|..-++++|.+|.+.++-|.+.
T Consensus 879 pPi~dllPrlt-PILknrheKVqen~IdLvg-~IadrgpE~v~a-REWMRIcfeLlelLkahkK~iRRaa~nTfG~Iaka 955 (1172)
T KOG0213|consen 879 PPIKDLLPRLT-PILKNRHEKVQENCIDLVG-TIADRGPEYVSA-REWMRICFELLELLKAHKKEIRRAAVNTFGYIAKA 955 (1172)
T ss_pred CChhhhcccch-HhhhhhHHHHHHHHHHHHH-HHHhcCcccCCH-HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHh
Confidence 122 2466788889998888775 456677777766 7777766 4556678999999999999999999
Q ss_pred hChh--HHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCc
Q 000599 190 AGPQ--FRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDIT 267 (1400)
Q Consensus 190 ~G~~--l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~ 267 (1400)
+|+. +.-.|. ||+-+ ++-..+ .+.- +-+-..+ ..+
T Consensus 956 IGPqdVLatLln--nLkvq------eRq~Rv----cTtv------------------------aIaIVaE---~c~---- 992 (1172)
T KOG0213|consen 956 IGPQDVLATLLN--NLKVQ------ERQNRV----CTTV------------------------AIAIVAE---TCG---- 992 (1172)
T ss_pred cCHHHHHHHHHh--cchHH------HHHhch----hhhh------------------------hhhhhhh---hcC----
Confidence 9964 333444 44311 110100 0000 0000000 000
Q ss_pred cccCCCcccCChHHHHHHHHHHhhhcC-CCCCHH-HHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHH
Q 000599 268 EKLIEPIKVYSEKELIREFEKIGSTLV-PDKDWS-VRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSI 345 (1400)
Q Consensus 268 ~~~v~~v~i~s~~dl~~~l~ki~~~l~-~~~dW~-~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~V 345 (1400)
|.++ +..|..... .+.+-+ --..||--+-.-+-..+.+| +..+...|...+.|..-.-
T Consensus 993 -----pFtV---------LPalmneYrtPe~nVQnGVLkalsf~FeyigemskdY------iyav~PlleDAlmDrD~vh 1052 (1172)
T KOG0213|consen 993 -----PFTV---------LPALMNEYRTPEANVQNGVLKALSFMFEYIGEMSKDY------IYAVTPLLEDALMDRDLVH 1052 (1172)
T ss_pred -----chhh---------hHHHHhhccCchhHHHHhHHHHHHHHHHHHHHHhhhH------HHHhhHHHHHhhccccHHH
Confidence 0111 111111111 111111 12222322222222112222 2234445555666655544
Q ss_pred HHHHHHHHHHHHHHhh-hhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHH
Q 000599 346 VKQACHLLCFLSKELL-GDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRA 424 (1400)
Q Consensus 346 v~~Ac~~l~~La~~Lg-~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~ 424 (1400)
-..|+.+|..|+-+.- ...+..+-.++..+.-.+=+....+.++...|+..+-...++..++.++..++- |-+..+|.
T Consensus 1053 Rqta~~~I~Hl~Lg~~g~g~eda~iHLLN~iWpNIle~sPhviqa~~e~~eg~r~~Lg~~~~~~Y~~QGLF-HParkVR~ 1131 (1172)
T KOG0213|consen 1053 RQTAMNVIKHLALGVPGTGCEDALIHLLNLIWPNILETSPHVIQAFDEAMEGLRVALGPQAMLKYCLQGLF-HPARKVRK 1131 (1172)
T ss_pred HHHHHHHHHHHhcCCCCcCcHHHHHHHHHHhhhhhcCCChHHHHHHHHHHHHHHHHhchHHHHHHHHHhcc-CcHHHHHH
Confidence 5668999999875532 122333333444444444466777888999999999999999999999999995 77888998
Q ss_pred HHHHHHHHHHhhCCC
Q 000599 425 RCCEYALLVLEHWPD 439 (1400)
Q Consensus 425 ~~~~~L~~~L~~~~~ 439 (1400)
.-+..+..+.-...+
T Consensus 1132 ~yw~vyn~my~~~~d 1146 (1172)
T KOG0213|consen 1132 RYWTVYNSMYHGSQD 1146 (1172)
T ss_pred HHHHHHHhHhhcccc
Confidence 877777666544433
No 29
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.18 E-value=0.00038 Score=90.91 Aligned_cols=383 Identities=12% Similarity=0.129 Sum_probs=232.5
Q ss_pred HHHHhcC-CCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHh----hhccCCcchHHHHHHHHHHHHHHhhhhhHh
Q 000599 4 ALELARA-KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLD----LLKDNNFKVSQGALQSLASAAVLSGEHFKL 78 (1400)
Q Consensus 4 ~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~----~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~ 78 (1400)
|++.-.| .-|.-|+-|--.+..+..+.... +..+++-|+| .-=|.+.+|+....++|..++.........
T Consensus 961 FM~LAnh~A~wnSk~GaAfGf~~i~~~a~~k-----l~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~ 1035 (1702)
T KOG0915|consen 961 FMQLANHNATWNSKKGAAFGFGAIAKQAGEK-----LEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDE 1035 (1702)
T ss_pred HHHHhhhhchhhcccchhhchHHHHHHHHHh-----hhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHH
Confidence 3444444 57999999988898888775433 3344444443 334999999999999999999776778899
Q ss_pred hhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhh------hhhcCChhHHHH---HHHHHHHHHHh-
Q 000599 79 HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSY------AWTHRSWRVREE---FARTVTSAIGL- 148 (1400)
Q Consensus 79 ~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~------~~~~Knpkvr~~---~l~~L~~~l~~- 148 (1400)
|...|+.-|+..|++.--+||+++--+|..+..--..+.+.+.+.+. .+..=.--||+. ++..|...+-.
T Consensus 1036 y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~ 1115 (1702)
T KOG0915|consen 1036 YLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRI 1115 (1702)
T ss_pred HHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999999999999999999998643233343333321 222222234443 23333332221
Q ss_pred ----ccCcchhhhhhhHHHHH-HhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCC
Q 000599 149 ----FSATELTLQRAILPPIL-QMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIR 223 (1400)
Q Consensus 149 ----fg~~~l~l~k~~lp~l~-~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~ 223 (1400)
.|.+.-.+...++|.+. +...+.-++||..++.++..|.++.|..+++++. ++-|..++ .+....+..-
T Consensus 1116 ~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg~~lkP~~~--~LIp~ll~----~~s~lE~~vL 1189 (1702)
T KOG0915|consen 1116 CDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSGKELKPHFP--KLIPLLLN----AYSELEPQVL 1189 (1702)
T ss_pred cccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhchhhhcchhh--HHHHHHHH----HccccchHHH
Confidence 22222222245666664 2344778899999999999999999999988887 44443322 2222211110
Q ss_pred CCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcC-CCCCHHHH
Q 000599 224 SSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV-PDKDWSVR 302 (1400)
Q Consensus 224 ~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~-~~~dW~~R 302 (1400)
+|.+. |.. . .| .+.++....... ++.-|+
T Consensus 1190 -------nYls~----------r~~--------------------------~----~e-~ealDt~R~s~aksspmme-- 1219 (1702)
T KOG0915|consen 1190 -------NYLSL----------RLI--------------------------N----IE-TEALDTLRASAAKSSPMME-- 1219 (1702)
T ss_pred -------HHHHH----------hhh--------------------------h----hH-HHHHHHHHHhhhcCCcHHH--
Confidence 11100 000 0 00 011222222221 334454
Q ss_pred HHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchh
Q 000599 303 IAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVIT 382 (1400)
Q Consensus 303 ~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~ 382 (1400)
.|...+.. .|+..+-+.+..+.+.+...+ .+++.|. +..+|..|+..+|.++.||...++..+|-.+.|.
T Consensus 1220 -----Ti~~ci~~--iD~~vLeelip~l~el~R~sV-gl~Tkvg--~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dR 1289 (1702)
T KOG0915|consen 1220 -----TINKCINY--IDISVLEELIPRLTELVRGSV-GLGTKVG--CASFISLLVQRLGSEMTPYSGKLLRALFPGAKDR 1289 (1702)
T ss_pred -----HHHHHHHh--hhHHHHHHHHHHHHHHHhccC-CCCcchh--HHHHHHHHHHHhccccCcchhHHHHHHhhccccc
Confidence 33333321 233333233334444444443 3444443 2357778899999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHhCCCc---chHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcC
Q 000599 383 VLVIAESSDNCIKTMLRNCKAV---RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVA 459 (1400)
Q Consensus 383 kkvi~~sa~~al~~i~~~~~~~---rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~ 459 (1400)
+..++.+-..|+..+++..... +++..+..-+ -.|-...+.-.|..+..+.....+ .++.+.+.+.+.|.-+.+
T Consensus 1290 Nesv~kafAsAmG~L~k~Ss~dq~qKLie~~l~~~-l~k~es~~siscatis~Ian~s~e--~Lkn~asaILPLiFLa~~ 1366 (1702)
T KOG0915|consen 1290 NESVRKAFASAMGYLAKFSSPDQMQKLIETLLADL-LGKDESLKSISCATISNIANYSQE--MLKNYASAILPLIFLAMH 1366 (1702)
T ss_pred cHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHH-hccCCCccchhHHHHHHHHHhhHH--HHHhhHHHHHHHHHHHHh
Confidence 9999999999999999888764 5555555444 234444444444433333333322 466677777777665544
Q ss_pred C
Q 000599 460 D 460 (1400)
Q Consensus 460 D 460 (1400)
+
T Consensus 1367 e 1367 (1702)
T KOG0915|consen 1367 E 1367 (1702)
T ss_pred H
Confidence 3
No 30
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.18 E-value=0.0025 Score=78.64 Aligned_cols=398 Identities=15% Similarity=0.116 Sum_probs=224.6
Q ss_pred HHH-HhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhh--hHhhh
Q 000599 4 ALE-LARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEH--FKLHF 80 (1400)
Q Consensus 4 ~l~-~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~--~~~~~ 80 (1400)
|++ .|++.||+.|-.|.-.+..+++.........-+...+..+.+.+.|++..|...+--+|+.+++.+... -..+.
T Consensus 368 Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l 447 (859)
T KOG1241|consen 368 FIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELL 447 (859)
T ss_pred HHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhh
Confidence 455 899999999999999999999764322111223344556677888999999988888888888776532 23456
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcch-hhhhh
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATEL-TLQRA 159 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l-~l~k~ 159 (1400)
..+++.+++-|.| .++|-..+--++..|++.+ .+.... . +.++ .. ++...
T Consensus 448 ~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~-----~eA~~s--~-~qt~--------------------~~t~~y~~ 498 (859)
T KOG1241|consen 448 QSKLSALLEGLND-EPRVASNVCWAFISLAEAA-----YEAAVS--N-GQTD--------------------PATPFYEA 498 (859)
T ss_pred hHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHH-----HHhccC--C-CCCC--------------------ccchhHHH
Confidence 6677777777766 3334455554555554432 000000 0 0000 00 11145
Q ss_pred hHHHHHHhhC--C-CChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhh
Q 000599 160 ILPPILQMLN--D-PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALE 236 (1400)
Q Consensus 160 ~lp~l~~~L~--d-~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~ 236 (1400)
++..+++..+ | ...+.|.+|++.|.+|-++.....-..+. ++....++.|.+-+....-+.. + . ..+..-+
T Consensus 499 ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~~vy~~v~--~~~l~il~kl~q~i~~~~l~~~--d-r-~q~~eLQ 572 (859)
T KOG1241|consen 499 IIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTDDVYPMVQ--KLTLVILEKLDQTISSQILSLA--D-R-AQLNELQ 572 (859)
T ss_pred HHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhccHh--h-H-HHHHHHH
Confidence 5555555543 3 45579999999999999998877655554 3444445555544441110000 0 0 0000000
Q ss_pred hccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcC
Q 000599 237 IKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGG 316 (1400)
Q Consensus 237 ~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~ 316 (1400)
+ .- +.. -+ .+ ...+++ ++ ....+..|+-+...|.....=-.-.+|+-.+-.++..-
T Consensus 573 s----------~L-c~~-------Lq--~i-~rk~~~-~~--~~~~d~iM~lflri~~s~~s~~v~e~a~laV~tl~~~L 628 (859)
T KOG1241|consen 573 S----------LL-CNT-------LQ--SI-IRKVGS-DI--REVSDQIMGLFLRIFESKRSAVVHEEAFLAVSTLAESL 628 (859)
T ss_pred H----------HH-HHH-------HH--HH-HHHccc-cc--hhHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHH
Confidence 0 00 000 00 00 000111 11 01112234444555543111223566777777666543
Q ss_pred CCCchhHHHhHHHHHHHHHhhh-cccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhh--HHHHHHHHHH
Q 000599 317 AADHPCFRGLLKQLVGPLSTQL-SDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITV--LVIAESSDNC 393 (1400)
Q Consensus 317 ~~~~~~f~~~L~~L~~~L~~~l-~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~k--kvi~~sa~~a 393 (1400)
+ ..|..++..+.+-|...+ +-.-.+|...|..+++.|+..|+.+|-+|++.++..|++.+++.+ ..+.-....|
T Consensus 629 g---~~F~kym~~f~pyL~~gL~n~~e~qVc~~aVglVgdl~raL~~~i~py~d~~mt~Lvq~Lss~~~hR~vKP~IlS~ 705 (859)
T KOG1241|consen 629 G---KGFAKYMPAFKPYLLMGLSNFQEYQVCAAAVGLVGDLARALEDDILPYCDELMTVLVQCLSSPNLHRNVKPAILSV 705 (859)
T ss_pred h---HhHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHccCccccccccchHHHH
Confidence 3 245555555665566666 446789999999999999999999999999999999999997653 1111122333
Q ss_pred HHHHHHhC--CCcchHHHHHHHhh------hCCC--------HHHHHHHHHHHHHHHhhCCCc---ccccccHHHHHHHH
Q 000599 394 IKTMLRNC--KAVRVLPRIADCAK------NDRN--------AVLRARCCEYALLVLEHWPDA---PEIQRSADLYEDLI 454 (1400)
Q Consensus 394 l~~i~~~~--~~~rll~~i~~~l~------~~Kn--------~~~R~~~~~~L~~~L~~~~~~---~~l~~~~~~l~~~i 454 (1400)
..-|.-+. ++.+.+..++.-+. .+++ -.+|..|.+.-.-+++-.+++ ..+..++..+...|
T Consensus 706 FgDIAlaIg~~F~~Yl~~vm~llq~as~~~~d~~~~~~~dYvd~LRe~~leay~gi~qglk~~~~~~~~~p~v~~I~sfi 785 (859)
T KOG1241|consen 706 FGDIALAIGADFEPYLEMVMPLLQQASSVQTDPADDSMVDYVDELREGILEAYTGIIQGLKTHADVMLVQPYVPHIISFI 785 (859)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhccCCCCcccHHHHHHHHHHHHHHHHHHHHHHhhcccchhhhhcchHHHHHHH
Confidence 44444333 23444444333321 1221 157888888777777766632 23456677788888
Q ss_pred HHHcCCCCh
Q 000599 455 RCCVADAMS 463 (1400)
Q Consensus 455 ~k~l~Da~~ 463 (1400)
.+.-.|.+-
T Consensus 786 ~~I~~e~~~ 794 (859)
T KOG1241|consen 786 DRIAAEPDV 794 (859)
T ss_pred HHHhcCccc
Confidence 888777766
No 31
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=98.17 E-value=0.00042 Score=92.96 Aligned_cols=140 Identities=19% Similarity=0.123 Sum_probs=108.3
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 1263 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~ 1263 (1400)
++.|..+...|..+-... ... +..|...++|.+..||..|+..|..+-.. ..+...++.++.
T Consensus 756 ~~VR~~aa~aL~~~~~~~-~~~--------~~~L~~ll~D~d~~VR~aA~~aLg~~g~~---------~~~~~~l~~aL~ 817 (897)
T PRK13800 756 REVRIAVAKGLATLGAGG-APA--------GDAVRALTGDPDPLVRAAALAALAELGCP---------PDDVAAATAALR 817 (897)
T ss_pred HHHHHHHHHHHHHhcccc-chh--------HHHHHHHhcCCCHHHHHHHHHHHHhcCCc---------chhHHHHHHHhc
Confidence 588998998887653211 111 33677888999999999999888776321 223355788899
Q ss_pred CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCC
Q 000599 1264 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS 1343 (1400)
Q Consensus 1264 D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~ 1343 (1400)
|+...|+.+|..++.. +++...++.|.+.+.+.+|.+|..|+..|..+ ..-+...+.|.+++.|.+
T Consensus 818 d~d~~VR~~Aa~aL~~----l~~~~a~~~L~~~L~D~~~~VR~~A~~aL~~~----------~~~~~a~~~L~~al~D~d 883 (897)
T PRK13800 818 ASAWQVRQGAARALAG----AAADVAVPALVEALTDPHLDVRKAAVLALTRW----------PGDPAARDALTTALTDSD 883 (897)
T ss_pred CCChHHHHHHHHHHHh----ccccchHHHHHHHhcCCCHHHHHHHHHHHhcc----------CCCHHHHHHHHHHHhCCC
Confidence 9988999998888864 56678889999999999999999999988775 112346888899999999
Q ss_pred HHHHHHHHHHHH
Q 000599 1344 ADVRKTVVFCLV 1355 (1400)
Q Consensus 1344 seVRkaAv~~lv 1355 (1400)
++||++|..+|-
T Consensus 884 ~~Vr~~A~~aL~ 895 (897)
T PRK13800 884 ADVRAYARRALA 895 (897)
T ss_pred HHHHHHHHHHHh
Confidence 999999999874
No 32
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=98.17 E-value=0.00062 Score=86.37 Aligned_cols=352 Identities=15% Similarity=0.138 Sum_probs=218.0
Q ss_pred HHHHHhcCC--CHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 3 EALELARAK--DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 3 ~~l~~l~s~--~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
++-+.+.+. +-+.|.+++..|..+...+.+ +..++-.+.+.+...|+.+-..+.-++..+...-. ..+
T Consensus 8 el~~~~~~~~~~~~~~~~~l~kli~~~~~G~~------~~~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~~----~~~ 77 (526)
T PF01602_consen 8 ELAKILNSFKIDISKKKEALKKLIYLMMLGYD------ISFLFMEVIKLISSKDLELKRLGYLYLSLYLHEDP----ELL 77 (526)
T ss_dssp HHHHHHHCSSTHHHHHHHHHHHHHHHHHTT---------GSTHHHHHCTCSSSSHHHHHHHHHHHHHHTTTSH----HHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCC------CchHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcch----hHH
Confidence 344455555 788999999999887765432 22333344566777888877777777776653321 246
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhh-
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA- 159 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~- 159 (1400)
..++..+..-|.+.++.+|..|..+|..+....-.+.+...+.+ .+.|++|-||..++.++......+.. .+ ..
T Consensus 78 ~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~~~~~~l~~~v~~-ll~~~~~~VRk~A~~~l~~i~~~~p~-~~---~~~ 152 (526)
T PF01602_consen 78 ILIINSLQKDLNSPNPYIRGLALRTLSNIRTPEMAEPLIPDVIK-LLSDPSPYVRKKAALALLKIYRKDPD-LV---EDE 152 (526)
T ss_dssp HHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SHHHHHHHHHHHHH-HHHSSSHHHHHHHHHHHHHHHHHCHC-CH---HGG
T ss_pred HHHHHHHHHhhcCCCHHHHHHHHhhhhhhcccchhhHHHHHHHH-HhcCCchHHHHHHHHHHHHHhccCHH-HH---HHH
Confidence 66788888789999999999999999888743223456666665 89999999999999999888776433 22 33
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChh----HHHhhhc-----CCCChhhHHHHHHHHHhhCCCCCCCCCCCC
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ----FRDELHR-----HNLPNSMVKDINARLERIQPQIRSSDGLPN 230 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~----l~~~L~~-----~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~ 230 (1400)
+++.+..+|.|+|+.|+.+|..++.++ +...+. +...+.. ....|-..-.+..-+....
T Consensus 153 ~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~----------- 220 (526)
T PF01602_consen 153 LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYA----------- 220 (526)
T ss_dssp HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTST-----------
T ss_pred HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcc-----------
Confidence 799999999999999999999999999 222221 1111110 0111111111111111000
Q ss_pred cchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHH--HHHHHHHhhhcCCCCCHHHHHHHHHH
Q 000599 231 TFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKEL--IREFEKIGSTLVPDKDWSVRIAAMQR 308 (1400)
Q Consensus 231 ~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl--~~~l~ki~~~l~~~~dW~~R~~AL~~ 308 (1400)
+. +..+. ...++.+...+. +.++....+++..
T Consensus 221 ------------------------------------------~~---~~~~~~~~~~i~~l~~~l~-s~~~~V~~e~~~~ 254 (526)
T PF01602_consen 221 ------------------------------------------PM---EPEDADKNRIIEPLLNLLQ-SSSPSVVYEAIRL 254 (526)
T ss_dssp ------------------------------------------SS---SHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred ------------------------------------------cC---ChhhhhHHHHHHHHHHHhh-ccccHHHHHHHHH
Confidence 00 00111 122333333332 5667777777777
Q ss_pred HHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHH
Q 000599 309 VEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAE 388 (1400)
Q Consensus 309 l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~ 388 (1400)
+..+.. .+. .+..++..|...+.+....+.-.++.+|..++..-...+. .....++-...+....|+.
T Consensus 255 i~~l~~-----~~~---~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~----~~~~~~~~l~~~~d~~Ir~ 322 (526)
T PF01602_consen 255 IIKLSP-----SPE---LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF----NQSLILFFLLYDDDPSIRK 322 (526)
T ss_dssp HHHHSS-----SHH---HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG----THHHHHHHHHCSSSHHHHH
T ss_pred HHHhhc-----chH---HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh----hhhhhhheecCCCChhHHH
Confidence 764432 122 3556677777777777777777788888877666522222 2222233333356667888
Q ss_pred HHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCC
Q 000599 389 SSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD 439 (1400)
Q Consensus 389 sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~ 439 (1400)
.+...+..++.......+++.+...+.....+.+|..++.-+..+...++.
T Consensus 323 ~~l~lL~~l~~~~n~~~Il~eL~~~l~~~~d~~~~~~~i~~I~~la~~~~~ 373 (526)
T PF01602_consen 323 KALDLLYKLANESNVKEILDELLKYLSELSDPDFRRELIKAIGDLAEKFPP 373 (526)
T ss_dssp HHHHHHHHH--HHHHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHHGS
T ss_pred HHHHHHhhcccccchhhHHHHHHHHHHhccchhhhhhHHHHHHHHHhccCc
Confidence 888888888877777888888888883233677888888888888877754
No 33
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=98.14 E-value=0.0019 Score=89.70 Aligned_cols=381 Identities=14% Similarity=0.130 Sum_probs=241.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC-hHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLT-SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~-~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
+-+++.|.+.+-..|..|+..|..+......... -.+. ..+..|.+.+...+.++...|.-+|..++.. ..+.+..+
T Consensus 449 p~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIiea-GaIP~LV~LL~s~~~~iqeeAawAL~NLa~~-~~qir~iV 526 (2102)
T PLN03200 449 QLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAA-GGIPPLVQLLETGSQKAKEDSATVLWNLCCH-SEDIRACV 526 (2102)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHC-CCHHHHHHHHcCCCHHHHHHHHHHHHHHhCC-cHHHHHHH
Confidence 4567888888888888888888777643221100 0000 1233455677888999999999999999853 33444444
Q ss_pred --hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhh--
Q 000599 81 --NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL-- 156 (1400)
Q Consensus 81 --~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l-- 156 (1400)
..++|.|++-|.+....+++.|..+|..+...... .++..++. .+.+.+++++..++..|..++..-.......
T Consensus 527 ~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~-~~I~~Lv~-LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g 604 (2102)
T PLN03200 527 ESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADA-ATISQLTA-LLLGDLPESKVHVLDVLGHVLSVASLEDLVREG 604 (2102)
T ss_pred HHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccch-hHHHHHHH-HhcCCChhHHHHHHHHHHHHHhhcchhHHHHHh
Confidence 36899999999888888999999999999865433 45566775 7899999999988887765544211111000
Q ss_pred --hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchh
Q 000599 157 --QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAA 234 (1400)
Q Consensus 157 --~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 234 (1400)
....+|.++.++++.+..+++.|.++|..++.. ++.+.+.+.. .
T Consensus 605 ~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~--------------~~d~~~avv~---a----------------- 650 (2102)
T PLN03200 605 SAANDALRTLIQLLSSSKEETQEKAASVLADIFSS--------------RQDLCESLAT---D----------------- 650 (2102)
T ss_pred hhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcC--------------ChHHHHHHHH---c-----------------
Confidence 024789999999999999999999999998742 1111111110 0
Q ss_pred hhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHh
Q 000599 235 LEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVL 314 (1400)
Q Consensus 235 ~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~ 314 (1400)
| -+|| +...| .+.+-+.|.++-..|-.+..
T Consensus 651 ---------------------------g-------aIpP---------------LV~LL-ss~~~~v~keAA~AL~nL~~ 680 (2102)
T PLN03200 651 ---------------------------E-------IINP---------------CIKLL-TNNTEAVATQSARALAALSR 680 (2102)
T ss_pred ---------------------------C-------CHHH---------------HHHHH-hcCChHHHHHHHHHHHHHHh
Confidence 0 0111 11112 23555678888888887776
Q ss_pred cCCCCchhHHHhH-HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHH
Q 000599 315 GGAADHPCFRGLL-KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNC 393 (1400)
Q Consensus 315 ~~~~~~~~f~~~L-~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~a 393 (1400)
++..+.-..+ + ...+.+|...+++.+..++..|...|+.|+..-...-+-.....++.|.+.+.++..-.++.|..+
T Consensus 681 ~~~~~q~~~~--v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~~~k~~Aa~A 758 (2102)
T PLN03200 681 SIKENRKVSY--AAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTLEGKRNAARA 758 (2102)
T ss_pred CCCHHHHHHH--HHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCChHHHHHHHHH
Confidence 5432111111 2 235677888888999999999999999998765433333345578999999999999999999999
Q ss_pred HHHHHHhCCCcch----------HHHHHHHhhhCCCHHHHH--HHHHHHHHHHhhCCCcccccccHHH------HHHHHH
Q 000599 394 IKTMLRNCKAVRV----------LPRIADCAKNDRNAVLRA--RCCEYALLVLEHWPDAPEIQRSADL------YEDLIR 455 (1400)
Q Consensus 394 l~~i~~~~~~~rl----------l~~i~~~l~~~Kn~~~R~--~~~~~L~~~L~~~~~~~~l~~~~~~------l~~~i~ 455 (1400)
|..+.++.+.... +..+.+.+. .-+...-. +.++.|..+.+.-............ =.+.|.
T Consensus 759 L~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~~~~~~~~~~al~~l~~l~~~~~~~~~~~~~~~~~~e~p~~l~~l~ 837 (2102)
T PLN03200 759 LAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-STDLDSSATSEALEALALLARTKGGANFSHPPWAVLAEVPSSLEPLV 837 (2102)
T ss_pred HHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cCCcchhhHHHHHHHHHHHHhhcccCCCCCCchhhHHhccCchHHHH
Confidence 9999988775442 344555552 22333222 3566666666531110000000000 123444
Q ss_pred HHcCCCChH---HHHHHHhhC
Q 000599 456 CCVADAMSE---RSRRLFSSF 473 (1400)
Q Consensus 456 k~l~Da~~e---~A~~l~~~l 473 (1400)
.|+.+.+|+ .|-.++..|
T Consensus 838 ~~l~~~~p~~~~kai~il~~~ 858 (2102)
T PLN03200 838 RCLAEGHPLVQDKAIEILSRL 858 (2102)
T ss_pred HHHHcCChHHHHHHHHHHHHH
Confidence 566889998 444444444
No 34
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=98.08 E-value=0.0037 Score=74.50 Aligned_cols=417 Identities=13% Similarity=0.114 Sum_probs=238.0
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHH----------
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL---------- 71 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~---------- 71 (1400)
..+++.-+..|-...-.|+-.|.+++.-+.+.+.+--=..+......+++..|-+|...++|+|..+++.
T Consensus 224 qvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~~ 303 (858)
T COG5215 224 QVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDKY 303 (858)
T ss_pred eeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHhh
Confidence 3455666677777888899999999887765432100123444456789999999999999999777642
Q ss_pred hh-------hhhHhhhhhhHHHHHHHhCCC-------ChhHHHHHHHHHHHHHHHhchhHHHHHHhh---hhhhcCChhH
Q 000599 72 SG-------EHFKLHFNALVPAVVERLGDA-------KQPVRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRV 134 (1400)
Q Consensus 72 l~-------~~~~~~~~~ilp~LleKLgD~-------K~~vre~a~~~L~~l~e~~~p~~V~e~l~~---~~~~~Knpkv 134 (1400)
++ .+.+..+..++|.|+.-|-.+ .-.+.-+|..||..+.+.++- .+++.++. .-+.+.+|+-
T Consensus 304 ~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~gd-~i~~pVl~FvEqni~~~~w~n 382 (858)
T COG5215 304 LPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKGD-KIMRPVLGFVEQNIRSESWAN 382 (858)
T ss_pred cccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhhh-HhHHHHHHHHHHhccCchhhh
Confidence 11 122345778999887666321 223667788888888887643 44444432 3477899999
Q ss_pred HHHHHHHHHHHHHhccCcc--hh-hhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHH
Q 000599 135 REEFARTVTSAIGLFSATE--LT-LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDI 211 (1400)
Q Consensus 135 r~~~l~~L~~~l~~fg~~~--l~-l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i 211 (1400)
|+...-.+.++++ |+.. +. +....+|.+...+.|+---|++.+.+|++.|..++...+.+.. ++.+..-..+
T Consensus 383 reaavmAfGSvm~--gp~~~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~---Hl~~~vsa~l 457 (858)
T COG5215 383 REAAVMAFGSVMH--GPCEDCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCG---HLVLEVSASL 457 (858)
T ss_pred HHHHHHHhhhhhc--CccHHHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccc---cccHHHHHHH
Confidence 9976666655543 3332 21 2356778888888999999999999999999988777665444 2333322222
Q ss_pred HHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhh
Q 000599 212 NARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGS 291 (1400)
Q Consensus 212 ~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~ 291 (1400)
+. .... |.+.......-.+-..... ..+. .++.. ++ +-..+.++.+..
T Consensus 458 iG----l~D~----------------------p~~~~ncsw~~~nlv~h~a-~a~~--~~~S~-l~--~fY~ai~~~Lv~ 505 (858)
T COG5215 458 IG----LMDC----------------------PFRSINCSWRKENLVDHIA-KAVR--EVESF-LA--KFYLAILNALVK 505 (858)
T ss_pred hh----hhcc----------------------chHHhhhHHHHHhHHHhhh-hhhc--cccch-hH--HHHHHHHHHHHH
Confidence 21 1110 0110000000000000000 0000 01110 11 222233333333
Q ss_pred hcC-CCCCHHHHHHHHHHHHHHHhcCCC---Cc-hhHHHh-HHHHHHHH---Hhhh--cc--cchHHHHHHHHHHHHHHH
Q 000599 292 TLV-PDKDWSVRIAAMQRVEGLVLGGAA---DH-PCFRGL-LKQLVGPL---STQL--SD--RRSSIVKQACHLLCFLSK 358 (1400)
Q Consensus 292 ~l~-~~~dW~~R~~AL~~l~~ll~~~~~---~~-~~f~~~-L~~L~~~L---~~~l--~D--lrs~Vv~~Ac~~l~~La~ 358 (1400)
.-. ...+..-|..+...|-.++.-... +. ..|+.. ++.|-..+ ..++ .| +---|..+-|.+|..+-.
T Consensus 506 ~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir 585 (858)
T COG5215 506 GTELALNESNLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIR 585 (858)
T ss_pred HHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 221 346677899888888877754321 11 122211 22222222 1111 11 111244556788888888
Q ss_pred HhhhhHHHHHHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHhC------CCcchHHHHHHHhhhCCCHHHHHHHHHHHH
Q 000599 359 ELLGDFEACAEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNC------KAVRVLPRIADCAKNDRNAVLRARCCEYAL 431 (1400)
Q Consensus 359 ~Lg~~f~~~a~~~lp~Ll~~~~~~-kkvi~~sa~~al~~i~~~~------~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~ 431 (1400)
..+.+.++..+.+|.-+++.+..+ ..++-+....+|.++..+. ..++++|+++.++ +.--..+-.-+..+..
T Consensus 586 ~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~al-n~~d~~v~~~avglvg 664 (858)
T COG5215 586 TRRRDIEDVEDQLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRAL-NCTDRFVLNSAVGLVG 664 (858)
T ss_pred hcCCCcccHHHHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHh-cchhHHHHHHHHHHHH
Confidence 888899999999999888888776 4566778888888887644 3578899999888 4433344444455555
Q ss_pred HHHhhCCCcccccccHHHHHHHHHHHcC
Q 000599 432 LVLEHWPDAPEIQRSADLYEDLIRCCVA 459 (1400)
Q Consensus 432 ~~L~~~~~~~~l~~~~~~l~~~i~k~l~ 459 (1400)
.+-...+.. +....+.+...+..+|.
T Consensus 665 dlantl~~d--f~~y~d~~ms~LvQ~ls 690 (858)
T COG5215 665 DLANTLGTD--FNIYADVLMSSLVQCLS 690 (858)
T ss_pred HHHHHhhhh--HHHHHHHHHHHHHHHhc
Confidence 554444432 33334444444444444
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=98.06 E-value=0.00021 Score=87.57 Aligned_cols=205 Identities=21% Similarity=0.289 Sum_probs=156.0
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHh-cCCChHHHHHHHHHHHHHHhhcccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDV 1246 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l-~d~~~~vR~~aL~~L~~l~~~~~~~ 1246 (1400)
.+.++++.....++ +..|..+++.|..+++.-... +.++.++..+...+ .+.....|..++.++..|.+.+-.+
T Consensus 190 ll~~l~~~~~~~~~--~~~~~~~~~~la~LvNK~~~~---~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R 264 (415)
T PF12460_consen 190 LLQSLLNLALSSED--EFSRLAALQLLASLVNKWPDD---DDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMR 264 (415)
T ss_pred HHHHHHHHHHcCCC--hHHHHHHHHHHHHHHcCCCCh---hhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHc
Confidence 45666666555553 578999999999888873222 14566666666666 3345557888999999999988778
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh---------------hh----HHHhhhhhccCCchhhHhH
Q 000599 1247 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP---------------FR----CLSVIVPLLVTEDEKTLVT 1307 (1400)
Q Consensus 1247 ~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p---------------~~----~l~~l~~~l~s~~~~~~~~ 1307 (1400)
-++....++.++++...| .++...|..++..++.-.+. .+ ++|.|...++..+...+..
T Consensus 265 ~~~~~~~~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~ 342 (415)
T PF12460_consen 265 GHPLATELLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSN 342 (415)
T ss_pred CCchHHHHHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHH
Confidence 788888999999999999 57788888888777754211 23 4444444444333336778
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHH
Q 000599 1308 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRL 1379 (1400)
Q Consensus 1308 alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kl 1379 (1400)
.+..|..++++.|...+..+++.++|-|.++++-.+++|+.++..|+..+-.--.+-+.+|+..|.+.=++|
T Consensus 343 yL~ALs~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~sLI~~LL~l 414 (415)
T PF12460_consen 343 YLTALSHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLSSLIPRLLKL 414 (415)
T ss_pred HHHHHHHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999999999999999999999999999988777666567889999888765543
No 36
>PRK09687 putative lyase; Provisional
Probab=98.01 E-value=0.0018 Score=74.72 Aligned_cols=260 Identities=13% Similarity=0.072 Sum_probs=161.3
Q ss_pred hHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchh
Q 000599 76 FKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT 155 (1400)
Q Consensus 76 ~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~ 155 (1400)
+..|-..-++.|++.|.|....||..+..+|..+ +...++..+.. .+++.++.+|...+..|.. +|...-.
T Consensus 17 ~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~----~~~~~~~~l~~-ll~~~d~~vR~~A~~aLg~----lg~~~~~ 87 (280)
T PRK09687 17 YSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLR----GGQDVFRLAIE-LCSSKNPIERDIGADILSQ----LGMAKRC 87 (280)
T ss_pred HHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhc----CcchHHHHHHH-HHhCCCHHHHHHHHHHHHh----cCCCccc
Confidence 3455666788899999999999999999988765 34577777776 7899999999988776654 4532211
Q ss_pred hhhhhHHHHHHh-hCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchh
Q 000599 156 LQRAILPPILQM-LNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAA 234 (1400)
Q Consensus 156 l~k~~lp~l~~~-L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~ 234 (1400)
. ...++.+..+ ++|+++.||..|...|+.+....-.. .+..+..+ .....+.. + ..++.+
T Consensus 88 ~-~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----------~~~a~~~l----~~~~~D~~--~--~VR~~a 148 (280)
T PRK09687 88 Q-DNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----------SPKIVEQS----QITAFDKS--T--NVRFAV 148 (280)
T ss_pred h-HHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----------chHHHHHH----HHHhhCCC--H--HHHHHH
Confidence 1 4677888876 89999999999999999874211000 00001111 11000000 0 000000
Q ss_pred hhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHh
Q 000599 235 LEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVL 314 (1400)
Q Consensus 235 ~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~ 314 (1400)
.. ..|. + ... +.++-+...+ .+.||..|..|+..|-.+
T Consensus 149 ----------------~~-------aLg~------------~-~~~---~ai~~L~~~L-~d~~~~VR~~A~~aLg~~-- 186 (280)
T PRK09687 149 ----------------AF-------ALSV------------I-NDE---AAIPLLINLL-KDPNGDVRNWAAFALNSN-- 186 (280)
T ss_pred ----------------HH-------HHhc------------c-CCH---HHHHHHHHHh-cCCCHHHHHHHHHHHhcC--
Confidence 00 0000 0 001 1133344444 478999999999988765
Q ss_pred cCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000599 315 GGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCI 394 (1400)
Q Consensus 315 ~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al 394 (1400)
..+.+ .....|...+.|.+..|-..|...|+.+ |. ...+|.|++.+.+.. ++..+..|+
T Consensus 187 --~~~~~-------~~~~~L~~~L~D~~~~VR~~A~~aLg~~----~~------~~av~~Li~~L~~~~--~~~~a~~AL 245 (280)
T PRK09687 187 --KYDNP-------DIREAFVAMLQDKNEEIRIEAIIGLALR----KD------KRVLSVLIKELKKGT--VGDLIIEAA 245 (280)
T ss_pred --CCCCH-------HHHHHHHHHhcCCChHHHHHHHHHHHcc----CC------hhHHHHHHHHHcCCc--hHHHHHHHH
Confidence 11122 3556677778999999988888887764 21 357888888888765 454445554
Q ss_pred HHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHH
Q 000599 395 KTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 430 (1400)
Q Consensus 395 ~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L 430 (1400)
.. .+-++.+|.|...+..+..+.++....+-|
T Consensus 246 g~----ig~~~a~p~L~~l~~~~~d~~v~~~a~~a~ 277 (280)
T PRK09687 246 GE----LGDKTLLPVLDTLLYKFDDNEIITKAIDKL 277 (280)
T ss_pred Hh----cCCHhHHHHHHHHHhhCCChhHHHHHHHHH
Confidence 43 356788888888774355677777665544
No 37
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.85 E-value=0.0051 Score=73.79 Aligned_cols=162 Identities=12% Similarity=0.111 Sum_probs=112.7
Q ss_pred HHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCch---hHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhH
Q 000599 288 KIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHP---CFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1400)
Q Consensus 288 ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~---~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f 364 (1400)
.|++.|. ++.-|.-...+.-+-.|+..+. +|- ++.. +.-.|...++.-|..+-+.|-.++++++++.|+
T Consensus 692 ~ltPILr-nkh~Kv~~nti~lvg~I~~~~p-eyi~~rEWMR----IcfeLvd~Lks~nKeiRR~A~~tfG~Is~aiGP-- 763 (975)
T COG5181 692 SLTPILR-NKHQKVVANTIALVGTICMNSP-EYIGVREWMR----ICFELVDSLKSWNKEIRRNATETFGCISRAIGP-- 763 (975)
T ss_pred cccHhhh-hhhHHHhhhHHHHHHHHHhcCc-ccCCHHHHHH----HHHHHHHHHHHhhHHHHHhhhhhhhhHHhhcCH--
Confidence 3444442 2333444555655665655443 332 4432 333445566677899999999999999999996
Q ss_pred HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCccccc
Q 000599 365 EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQ 444 (1400)
Q Consensus 365 ~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~ 444 (1400)
..++-.|++.++..-.--+.....+|....+.|++-.++|.|++-.. --+.-++.-++.-|..+++..+.+ -.
T Consensus 764 ----qdvL~~LlnnLkvqeRq~RvctsvaI~iVae~cgpfsVlP~lm~dY~-TPe~nVQnGvLkam~fmFeyig~~--s~ 836 (975)
T COG5181 764 ----QDVLDILLNNLKVQERQQRVCTSVAISIVAEYCGPFSVLPTLMSDYE-TPEANVQNGVLKAMCFMFEYIGQA--SL 836 (975)
T ss_pred ----HHHHHHHHhcchHHHHHhhhhhhhhhhhhHhhcCchhhHHHHHhccc-CchhHHHHhHHHHHHHHHHHHHHH--HH
Confidence 34677788888877767777788888888999999999999998773 346667777888888888877754 23
Q ss_pred ccHHHHHHHHHHHcCCCChH
Q 000599 445 RSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 445 ~~~~~l~~~i~k~l~Da~~e 464 (1400)
.++-.+.+.|-.++.|.|+-
T Consensus 837 dYvy~itPlleDAltDrD~v 856 (975)
T COG5181 837 DYVYSITPLLEDALTDRDPV 856 (975)
T ss_pred HHHHHhhHHHHhhhcccchH
Confidence 34555677777778888875
No 38
>PRK09687 putative lyase; Provisional
Probab=97.84 E-value=0.00029 Score=81.28 Aligned_cols=179 Identities=12% Similarity=0.181 Sum_probs=124.4
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHhhccccc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVM 1247 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-l~d~~~~vR~~aL~~L~~l~~~~~~~~ 1247 (1400)
+-.++..+..+.+ +..|..|...|..+-..... ....+..|... ++|++..||..|+..|.++....
T Consensus 55 ~~~~l~~ll~~~d--~~vR~~A~~aLg~lg~~~~~------~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~---- 122 (280)
T PRK09687 55 VFRLAIELCSSKN--PIERDIGADILSQLGMAKRC------QDNVFNILNNLALEDKSACVRASAINATGHRCKKN---- 122 (280)
T ss_pred HHHHHHHHHhCCC--HHHHHHHHHHHHhcCCCccc------hHHHHHHHHHHHhcCCCHHHHHHHHHHHhcccccc----
Confidence 4444444544443 58999999888875332211 22344466655 68889999999999999886422
Q ss_pred cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhh
Q 000599 1248 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQ 1327 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~ 1327 (1400)
..+...++..+...+.|+...|+.+|..++. .+.....++.|...+.+.+|.++..|+..|+.+ .. .
T Consensus 123 ~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg----~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~--~~-------~ 189 (280)
T PRK09687 123 PLYSPKIVEQSQITAFDKSTNVRFAVAFALS----VINDEAAIPLLINLLKDPNGDVRNWAAFALNSN--KY-------D 189 (280)
T ss_pred cccchHHHHHHHHHhhCCCHHHHHHHHHHHh----ccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcC--CC-------C
Confidence 2233446666778888888899998888874 345677899999999999999999999988877 11 2
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-h-cchhhhhhcHHH
Q 000599 1328 LPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-A-FLPYLERLNSTQ 1376 (1400)
Q Consensus 1328 l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~-~~p~l~~L~~s~ 1376 (1400)
-+.++|.|.+.+.|.+.+||++|+.+|-. +|+ + +.+.+..|....
T Consensus 190 ~~~~~~~L~~~L~D~~~~VR~~A~~aLg~----~~~~~av~~Li~~L~~~~ 236 (280)
T PRK09687 190 NPDIREAFVAMLQDKNEEIRIEAIIGLAL----RKDKRVLSVLIKELKKGT 236 (280)
T ss_pred CHHHHHHHHHHhcCCChHHHHHHHHHHHc----cCChhHHHHHHHHHcCCc
Confidence 34568889999999999999999999754 343 3 334444554433
No 39
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.79 E-value=0.017 Score=74.15 Aligned_cols=378 Identities=19% Similarity=0.209 Sum_probs=225.6
Q ss_pred hhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchh-----HHHHHHh
Q 000599 49 LLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT-----IIVERAG 123 (1400)
Q Consensus 49 ~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~-----~V~e~l~ 123 (1400)
.-.|.++.|-..+-+=++.++..+.+ ......++|.+++-..|..+.||+.|.+.+..+.+....+ .+.+.++
T Consensus 245 lc~d~~~~Vr~~~a~~l~~~a~~~~~--~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~ 322 (759)
T KOG0211|consen 245 LCQDDTPMVRRAVASNLGNIAKVLES--EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLV 322 (759)
T ss_pred hccccchhhHHHHHhhhHHHHHHHHH--HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHH
Confidence 33455666666666656666555444 3445567777787789999999999999999999876655 5566666
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCC
Q 000599 124 SYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNL 203 (1400)
Q Consensus 124 ~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l 203 (1400)
. ..+.++|+++.-+..+....-..||...... ..++....+++|...+||.++..-..++.......-...+....+
T Consensus 323 ~-~~~d~~~~v~~~~~~~~~~L~~~~~~~~~~~--~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~i 399 (759)
T KOG0211|consen 323 Q-AVEDGSWRVSYMVADKFSELSSAVGPSATRT--QLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSI 399 (759)
T ss_pred H-HhcChhHHHHHHHhhhhhhHHHHhccccCcc--cchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhh
Confidence 5 7889999999999999999999999844333 577888999999999999999888877776655322222211111
Q ss_pred ChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccC--CCCCCc--------------
Q 000599 204 PNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLF--GGEDIT-------------- 267 (1400)
Q Consensus 204 ~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~--g~~~~~-------------- 267 (1400)
+-.++............ +.+. -.....|.-+ +..+..-..+.. ...+..
T Consensus 400 ----lp~~~~lv~d~~~~vr~-------a~a~--~~~~~~p~~~--k~~ti~~llp~~~~~l~de~~~V~lnli~~ls~~ 464 (759)
T KOG0211|consen 400 ----LPEVQVLVLDNALHVRS-------ALAS--VITGLSPILP--KERTISELLPLLIGNLKDEDPIVRLNLIDKLSLL 464 (759)
T ss_pred ----hHHHHHHHhcccchHHH-------HHhc--cccccCccCC--cCcCccccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence 11122111111000000 0000 0000000000 000000000000 000000
Q ss_pred --cccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHH-HhHHHHHHHHHhhhcccchH
Q 000599 268 --EKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFR-GLLKQLVGPLSTQLSDRRSS 344 (1400)
Q Consensus 268 --~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~-~~L~~L~~~L~~~l~Dlrs~ 344 (1400)
..++..++.++...|- ....+..+..|..|.+.++-+-.++.. .|-.|+ +.+..++. .-+.|.=..
T Consensus 465 ~~v~~v~g~~~~s~slLp-----~i~el~~d~~wRvr~ail~~ip~la~q---~~~~~~~~~~~~l~~---~~l~d~v~~ 533 (759)
T KOG0211|consen 465 EEVNDVIGISTVSNSLLP-----AIVELAEDLLWRVRLAILEYIPQLALQ---LGVEFFDEKLAELLR---TWLPDHVYS 533 (759)
T ss_pred HhccCcccchhhhhhhhh-----hhhhhccchhHHHHHHHHHHHHHHHHh---hhhHHhhHHHHHHHH---hhhhhhHHH
Confidence 0112222222211110 011122345799999999999877753 333332 33343332 223343344
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCC----cchHHHHHHHhhhCCCH
Q 000599 345 IVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA----VRVLPRIADCAKNDRNA 420 (1400)
Q Consensus 345 Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~----~rll~~i~~~l~~~Kn~ 420 (1400)
+-..|...+..++..+|..+ +...++|-++...++.+-..|.....||..|++-++- ..++|.+.... .+-.+
T Consensus 534 Ir~~aa~~l~~l~~~~G~~w--~~~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei~~~~Llp~~~~l~-~D~va 610 (759)
T KOG0211|consen 534 IREAAARNLPALVETFGSEW--ARLEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEITCEDLLPVFLDLV-KDPVA 610 (759)
T ss_pred HHHHHHHHhHHHHHHhCcch--hHHHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHHHHHHHhHHHHHhc-cCCch
Confidence 55556678888899988433 5567888899888887667899999999999988874 36777777665 67799
Q ss_pred HHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 421 VLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 421 ~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
.+|-.++..|..++...... ..+ ..+.+++.....|.+-+
T Consensus 611 nVR~nvak~L~~i~~~L~~~-~~~---~~v~pll~~L~~d~~~d 650 (759)
T KOG0211|consen 611 NVRINVAKHLPKILKLLDES-VRD---EEVLPLLETLSSDQELD 650 (759)
T ss_pred hhhhhHHHHHHHHHhhcchH-HHH---HHHHHHHHHhccCcccc
Confidence 99999999999888776542 223 33555555666677776
No 40
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.76 E-value=0.0027 Score=78.98 Aligned_cols=366 Identities=17% Similarity=0.184 Sum_probs=193.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhh-hhHhhhhh
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE-HFKLHFNA 82 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~-~~~~~~~~ 82 (1400)
+...+.+.+--.|..+.-.+.++..-..+. .+-..+++.|...+.|+|+.|+..|+.++..+.+.-.. ..-.....
T Consensus 126 l~~~l~d~~~yvRktaa~~vakl~~~~~~~---~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~~~ 202 (734)
T KOG1061|consen 126 LLKCLKDDDPYVRKTAAVCVAKLFDIDPDL---VEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELNPQ 202 (734)
T ss_pred HHHhccCCChhHHHHHHHHHHHhhcCChhh---ccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCcccccHH
Confidence 455566666666666666666655432211 11235777788888899999999999999999876432 22233445
Q ss_pred hHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhh
Q 000599 83 LVPAVVERLGDAKQPVRDAARRLLLTLMEV--SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAI 160 (1400)
Q Consensus 83 ilp~LleKLgD~K~~vre~a~~~L~~l~e~--~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~ 160 (1400)
++..+++++.+=.+=-+-...++|..+... -..+.+.+++.+ .+.|-|+.|....+..+...+..+..-.-.+.+.+
T Consensus 203 ~~~~lL~al~ec~EW~qi~IL~~l~~y~p~d~~ea~~i~~r~~p-~Lqh~n~avvlsavKv~l~~~~~~~~~~~~~~~K~ 281 (734)
T KOG1061|consen 203 LINKLLEALNECTEWGQIFILDCLAEYVPKDSREAEDICERLTP-RLQHANSAVVLSAVKVILQLVKYLKQVNELLFKKV 281 (734)
T ss_pred HHHHHHHHHHHhhhhhHHHHHHHHHhcCCCCchhHHHHHHHhhh-hhccCCcceEeehHHHHHHHHHHHHHHHHHHHHHh
Confidence 556666666543321122223333332211 112357777776 78899998888777777665554432100111333
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccc
Q 000599 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTA 240 (1400)
Q Consensus 161 lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~ 240 (1400)
-+.++.++.-.. ++--.|..= |.--+.+. |. +...+
T Consensus 282 ~~pl~tlls~~~-e~qyvaLrN----------------------------i~lil~~~----p~-------~~~~~---- 317 (734)
T KOG1061|consen 282 APPLVTLLSSES-EIQYVALRN----------------------------INLILQKR----PE-------ILKVE---- 317 (734)
T ss_pred cccceeeecccc-hhhHHHHhh----------------------------HHHHHHhC----hH-------HHHhH----
Confidence 333333222111 111111111 11001100 00 00000
Q ss_pred cCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCc
Q 000599 241 SFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADH 320 (1400)
Q Consensus 241 s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~ 320 (1400)
... -+-+--+|++| +.+-++.+..++.+
T Consensus 318 -----------------~~~-----Ff~kynDPiYv-------------------------K~eKleil~~la~~----- 345 (734)
T KOG1061|consen 318 -----------------IKV-----FFCKYNDPIYV-------------------------KLEKLEILIELAND----- 345 (734)
T ss_pred -----------------hHe-----eeeecCCchhh-------------------------HHHHHHHHHHHhhH-----
Confidence 000 00011234444 11222222223221
Q ss_pred hhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHh
Q 000599 321 PCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRN 400 (1400)
Q Consensus 321 ~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~ 400 (1400)
.+ +.++..-|+....+-..+.+++++.+|+.+|...... ..++..|+.++.-+..-+.+.+...++-|++.
T Consensus 346 ~n----l~qvl~El~eYatevD~~fvrkaIraig~~aik~e~~-----~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 346 AN----LAQVLAELKEYATEVDVDFVRKAVRAIGRLAIKAEQS-----NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hH----HHHHHHHHHHhhhhhCHHHHHHHHHHhhhhhhhhhhh-----hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 12 3345555556667788889999999999998777543 66778888888877777888888889999988
Q ss_pred CC--CcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH-------HHHHHHh
Q 000599 401 CK--AVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE-------RSRRLFS 471 (1400)
Q Consensus 401 ~~--~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e-------~A~~l~~ 471 (1400)
++ +..+++.+...+.+=-+|..|... .|+ +.++... ++. ...+.+.+.++..|-.++ ++-++|-
T Consensus 417 yP~~~~~vv~~l~~~~~sl~epeak~am-iWi---lg~y~~~--i~~-a~elL~~f~en~~dE~~~Vql~LLta~ik~Fl 489 (734)
T KOG1061|consen 417 YPNKYESVVAILCENLDSLQEPEAKAAL-IWI---LGEYAER--IEN-ALELLESFLENFKDETAEVQLELLTAAIKLFL 489 (734)
T ss_pred CCCchhhhhhhhcccccccCChHHHHHH-HHH---Hhhhhhc--cCc-HHHHHHHHHhhcccchHHHHHHHHHHHHHHHh
Confidence 85 356777776665433467766643 333 2223221 121 222444555555666555 5556666
Q ss_pred hCCHHHHHHHhhhc
Q 000599 472 SFDPAIQRIINEED 485 (1400)
Q Consensus 472 ~l~~~~qk~L~~~~ 485 (1400)
...+..|+++++-+
T Consensus 490 ~~p~~tq~~l~~vL 503 (734)
T KOG1061|consen 490 KKPTETQELLQGVL 503 (734)
T ss_pred cCCccHHHHHHHHH
Confidence 66666666666553
No 41
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=97.73 E-value=0.024 Score=67.94 Aligned_cols=351 Identities=13% Similarity=0.131 Sum_probs=209.7
Q ss_pred CCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHh-hhhhHhhhhhhHHHHHH
Q 000599 11 KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS-GEHFKLHFNALVPAVVE 89 (1400)
Q Consensus 11 ~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l-~~~~~~~~~~ilp~Lle 89 (1400)
.||..-++|-..|.-+.+..++.+ +...+.++-.-++..|..-.+.|.-+++.+..+- ..-..+++...+|+|+.
T Consensus 340 DdWn~smaA~sCLqlfaq~~gd~i----~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V~qalp~i~n 415 (858)
T COG5215 340 DDWNPSMAASSCLQLFAQLKGDKI----MRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIVPQALPGIEN 415 (858)
T ss_pred cccchhhhHHHHHHHHHHHhhhHh----HHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhHHhhhHHHHH
Confidence 578888888777766665533222 1223333334566777777888888888887653 33456889999999999
Q ss_pred HhCCCChhHHHHHHHHHHHHHH----HhchhH----HHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcc------h-
Q 000599 90 RLGDAKQPVRDAARRLLLTLME----VSSPTI----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE------L- 154 (1400)
Q Consensus 90 KLgD~K~~vre~a~~~L~~l~e----~~~p~~----V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~------l- 154 (1400)
-+.|+--.|++.+..|+-++.. .++|+. ++...+ +|+ ..+|++...|.-.....++.|.... +
T Consensus 416 ~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~l-iGl-~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~ 493 (858)
T COG5215 416 EMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASL-IGL-MDCPFRSINCSWRKENLVDHIAKAVREVESFLA 493 (858)
T ss_pred hcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHH-hhh-hccchHHhhhHHHHHhHHHhhhhhhccccchhH
Confidence 9999999999999999888875 345542 222222 233 3457777766666666666654321 1
Q ss_pred hhhhhhHHHHHHh--hCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcc
Q 000599 155 TLQRAILPPILQM--LNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTF 232 (1400)
Q Consensus 155 ~l~k~~lp~l~~~--L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 232 (1400)
++...++..+++. +.+...+.|.+++..|+++..+....+...+. ++ .+-+.+++++.- +..
T Consensus 494 ~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~~~~a--~~----~~~~~~kl~~~i----sv~------ 557 (858)
T COG5215 494 KFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVSDILA--GF----YDYTSKKLDECI----SVL------ 557 (858)
T ss_pred HHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHHHHHH--HH----HHHHHHHHHHHH----HHh------
Confidence 1213455555554 23566779999999999999888877766665 22 222223333210 000
Q ss_pred hhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 000599 233 AALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGL 312 (1400)
Q Consensus 233 ~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~l 312 (1400)
| +++..+|-.. .+.+.. .-+.-|.++
T Consensus 558 -----------------------------~------------q~l~~eD~~~-~~elqS------------N~~~vl~ai 583 (858)
T COG5215 558 -----------------------------G------------QILATEDQLL-VEELQS------------NYIGVLEAI 583 (858)
T ss_pred -----------------------------h------------hhhhhHHHHH-HHHHHH------------HHHHHHHHH
Confidence 0 0000000000 111111 112234444
Q ss_pred HhcCCCCchhHHHhHHHHHHHHHhhhccc-chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHH
Q 000599 313 VLGGAADHPCFRGLLKQLVGPLSTQLSDR-RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSD 391 (1400)
Q Consensus 313 l~~~~~~~~~f~~~L~~L~~~L~~~l~Dl-rs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~ 391 (1400)
++....+.+..-. .|..-|...+... -+.+-......|+.|+..|++.|+.|+..|+|.|.+-+...-..+...+.
T Consensus 584 ir~~~~~ie~v~D---~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl~e~Fe~y~~~fiPyl~~aln~~d~~v~~~av 660 (858)
T COG5215 584 IRTRRRDIEDVED---QLMELFIRILESTKPTTAFGDVYTAISALSTSLEERFEQYASKFIPYLTRALNCTDRFVLNSAV 660 (858)
T ss_pred HHhcCCCcccHHH---HHHHHHHHHHhccCCchhhhHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHhcchhHHHHHHHH
Confidence 5433333222111 1333333344333 34455667889999999999999999999999999888655555554443
Q ss_pred HHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCC
Q 000599 392 NCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADA 461 (1400)
Q Consensus 392 ~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da 461 (1400)
.- +..|...+ +.+.+.+|-.++..+++..... ...|. +.++|..+.+|=
T Consensus 661 gl-------------vgdlantl----~~df~~y~d~~ms~LvQ~lss~-~~~R~---lKPaiLSvFgDI 709 (858)
T COG5215 661 GL-------------VGDLANTL----GTDFNIYADVLMSSLVQCLSSE-ATHRD---LKPAILSVFGDI 709 (858)
T ss_pred HH-------------HHHHHHHh----hhhHHHHHHHHHHHHHHHhcCh-hhccc---cchHHHHHHHHH
Confidence 33 33444455 5568899999998888887653 35555 567777777764
No 42
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.67 E-value=0.00038 Score=66.62 Aligned_cols=93 Identities=25% Similarity=0.331 Sum_probs=82.5
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCC
Q 000599 1186 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDA 1265 (1400)
Q Consensus 1186 ~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~ 1265 (1400)
.|+.+|-.|+.+...-+.. +.++++.|+..++..+.|.+..||..|++.|-.|++..+..+-+|...++..|...+.|+
T Consensus 2 ~R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~ 80 (97)
T PF12755_consen 2 YRKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADP 80 (97)
T ss_pred chhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4788999998887765544 778999999999999999999999999999999999999899999999999999999999
Q ss_pred cHHHHHHHHHHHHH
Q 000599 1266 VPKVSNEAEHCLTV 1279 (1400)
Q Consensus 1266 ~k~V~~aA~~al~~ 1279 (1400)
...|+.+|+..-+.
T Consensus 81 d~~Vr~~a~~Ld~l 94 (97)
T PF12755_consen 81 DENVRSAAELLDRL 94 (97)
T ss_pred chhHHHHHHHHHHH
Confidence 99999998765443
No 43
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=97.64 E-value=0.00025 Score=75.01 Aligned_cols=101 Identities=20% Similarity=0.350 Sum_probs=89.5
Q ss_pred hhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH---H
Q 000599 1282 SQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI---Y 1358 (1400)
Q Consensus 1282 ~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~---~ 1358 (1400)
..++....|++...+++..+.|-+..|.+.+..|+++.+.+.+.+.+|.+++.|.+|++..+++|..++.+||..+ .
T Consensus 32 e~Ldy~~~Lpif~dGL~Et~~Py~flA~~g~~dll~~~~~~kilPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~ 111 (183)
T PF10274_consen 32 EKLDYHHYLPIFFDGLRETEHPYRFLARQGIKDLLERGGGEKILPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSS 111 (183)
T ss_pred hhcchhhHHHHHHhhhhccCccHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhh
Confidence 3456677999999999988888899999999999988777899999999999999999999999999999999999 9
Q ss_pred HHhhhhcchhhhhhcHHHHHHHHHHHHh
Q 000599 1359 IMLGKAFLPYLERLNSTQLRLVTIYANR 1386 (1400)
Q Consensus 1359 ~~lge~~~p~l~~L~~s~~kll~~yi~r 1386 (1400)
..+|+++.||+.+| +-.++++.++
T Consensus 112 ~~vG~aLvPyyrqL----Lp~ln~f~~k 135 (183)
T PF10274_consen 112 DMVGEALVPYYRQL----LPVLNLFKNK 135 (183)
T ss_pred hhhhHHHHHHHHHH----HHHHHHHHhc
Confidence 99999999999888 3456665544
No 44
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.62 E-value=0.15 Score=63.79 Aligned_cols=170 Identities=20% Similarity=0.259 Sum_probs=122.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+++.+.|.|.+-..+++|+..+..++-... ++..++-.+.+.+...|..|-....--|..+++.- +...
T Consensus 38 ~dL~~lLdSnkd~~KleAmKRIia~iA~G~------dvS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeq-----pdLA 106 (968)
T KOG1060|consen 38 DDLKQLLDSNKDSLKLEAMKRIIALIAKGK------DVSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQ-----PDLA 106 (968)
T ss_pred HHHHHHHhccccHHHHHHHHHHHHHHhcCC------cHHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcC-----CCce
Confidence 467778888888999999999999986632 35566666777788889888888777777776542 2222
Q ss_pred hhHHHHHHH-hCCCChhHHHHHHHHHHHHH-HHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhh
Q 000599 82 ALVPAVVER-LGDAKQPVRDAARRLLLTLM-EVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA 159 (1400)
Q Consensus 82 ~ilp~LleK-LgD~K~~vre~a~~~L~~l~-e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~ 159 (1400)
.+--.-+.| |+|+++-||..|..+|..+= ..+.| .++-.+-+ +...-.|.||....+.|..+ |....-.. .+
T Consensus 107 LLSIntfQk~L~DpN~LiRasALRvlSsIRvp~IaP-I~llAIk~-~~~D~s~yVRk~AA~AIpKL---YsLd~e~k-~q 180 (968)
T KOG1060|consen 107 LLSINTFQKALKDPNQLIRASALRVLSSIRVPMIAP-IMLLAIKK-AVTDPSPYVRKTAAHAIPKL---YSLDPEQK-DQ 180 (968)
T ss_pred eeeHHHHHhhhcCCcHHHHHHHHHHHHhcchhhHHH-HHHHHHHH-HhcCCcHHHHHHHHHhhHHH---hcCChhhH-HH
Confidence 222223445 89999999999998888763 23333 34444444 78888999999988887643 43332222 46
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
++..+.++|.|..+-|--+|...+.++|-
T Consensus 181 L~e~I~~LLaD~splVvgsAv~AF~evCP 209 (968)
T KOG1060|consen 181 LEEVIKKLLADRSPLVVGSAVMAFEEVCP 209 (968)
T ss_pred HHHHHHHHhcCCCCcchhHHHHHHHHhch
Confidence 88888999999999999999999988873
No 45
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.56 E-value=0.015 Score=68.15 Aligned_cols=192 Identities=17% Similarity=0.233 Sum_probs=143.6
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc--c
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND-HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK--D 1245 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~-~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~--~ 1245 (1400)
+.+.++.+.+++ .+.|.+||..|..++.... .+.+.+++..|+..++..++-.+...+..|++++.-++-.+| .
T Consensus 45 L~~~Id~l~eK~---~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~ 121 (309)
T PF05004_consen 45 LKEAIDLLTEKS---SSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGE 121 (309)
T ss_pred HHHHHHHHHhcC---HHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCc
Confidence 556666676665 5899999999999998764 455666788999999999986555677788999999988876 5
Q ss_pred cccccHHHHHHHHHHHhcCCcHH--HHHHHHHHHHHHH--hhcChhh---HHHhhh-----hhccCC----------chh
Q 000599 1246 VMEDSVEIVIEKLLHVTKDAVPK--VSNEAEHCLTVVL--SQYDPFR---CLSVIV-----PLLVTE----------DEK 1303 (1400)
Q Consensus 1246 ~~~~~~e~~l~~ll~~~~D~~k~--V~~aA~~al~~i~--~~~~p~~---~l~~l~-----~~l~s~----------~~~ 1303 (1400)
.-+..++.+.|.|...+.|.... ++.++..|+..++ ....+.. ++..+. .+++++ +..
T Consensus 122 ~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~ 201 (309)
T PF05004_consen 122 DSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAA 201 (309)
T ss_pred cHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccH
Confidence 56677888888888888887443 3445555554333 2233322 223433 222221 235
Q ss_pred hHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 000599 1304 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1363 (1400)
Q Consensus 1304 ~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge 1363 (1400)
...+||..-+.|+..++...+...+...+|.|...++..+.+||.||=.++.-+|-...+
T Consensus 202 l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~~ 261 (309)
T PF05004_consen 202 LVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELARD 261 (309)
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhc
Confidence 778899999999999998888888899999999999999999999999999999877764
No 46
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.55 E-value=0.18 Score=63.40 Aligned_cols=160 Identities=20% Similarity=0.149 Sum_probs=113.4
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHh-hhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHh-chhH
Q 000599 40 TSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKL-HFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS-SPTI 117 (1400)
Q Consensus 40 ~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~-~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~-~p~~ 117 (1400)
..+...+..++...|..|...++..|..++..-...... .-..+++.++.-++|....|.+.|.++|..++... ..+.
T Consensus 76 ~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~ 155 (503)
T PF10508_consen 76 PQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQ 155 (503)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHH
Confidence 344455667888999999999999988887543222222 23578999999999999999999999999998631 2223
Q ss_pred H-----HHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhh--hhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 000599 118 I-----VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQ--RAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1400)
Q Consensus 118 V-----~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~--k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~ 190 (1400)
+ ...|.. .+.+.|..+|-.++..+..... .....+... ..+++.++..|.+.|.-|+-.|.+++.+|..
T Consensus 156 l~~~~~~~~L~~-l~~~~~~~vR~Rv~el~v~i~~-~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~-- 231 (503)
T PF10508_consen 156 LFDSNLLSKLKS-LMSQSSDIVRCRVYELLVEIAS-HSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAE-- 231 (503)
T ss_pred HhCcchHHHHHH-HHhccCHHHHHHHHHHHHHHHh-cCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHc--
Confidence 3 445544 5666688888877777765432 222223322 3489999999999999999999999999987
Q ss_pred ChhHHHhhhcCCC
Q 000599 191 GPQFRDELHRHNL 203 (1400)
Q Consensus 191 G~~l~~~L~~~~l 203 (1400)
.+.-..+|.+.++
T Consensus 232 ~~~g~~yL~~~gi 244 (503)
T PF10508_consen 232 TPHGLQYLEQQGI 244 (503)
T ss_pred ChhHHHHHHhCCH
Confidence 3444566653333
No 47
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=97.52 E-value=0.00057 Score=65.43 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=65.7
Q ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHH
Q 000599 1229 REVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTC 1308 (1400)
Q Consensus 1229 R~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~a 1308 (1400)
|..+|..|+.++..++..+.+|++.+++.||.++.|+. |++|..|
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d-----------------------------------~rVRy~A 47 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQD-----------------------------------SRVRYYA 47 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCc-----------------------------------HHHHHHH
Confidence 56677888888777777777888888888877777764 4455555
Q ss_pred HHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHH
Q 000599 1309 INCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVF 1352 (1400)
Q Consensus 1309 lk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~ 1352 (1400)
++.|-.+++... +++..+.++|.++|.+.+.|++..||.+|..
T Consensus 48 cEaL~ni~k~~~-~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a~~ 90 (97)
T PF12755_consen 48 CEALYNISKVAR-GEILPYFNEIFDALCKLSADPDENVRSAAEL 90 (97)
T ss_pred HHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHcCCchhHHHHHHH
Confidence 555555553333 5556688999999999999999999999954
No 48
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.47 E-value=0.036 Score=67.59 Aligned_cols=195 Identities=17% Similarity=0.178 Sum_probs=133.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhH--HHHHHHHHhhh-ccCCcchHHHHHHHHHHHHHHhhhhhHh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEV--TSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGEHFKL 78 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~--~~lv~~l~~~l-~DsN~~V~~~aL~~l~~l~~~l~~~~~~ 78 (1400)
+..++.+.|.+-..++.+.+.+.+++..... ..-.++ .-.+..+...+ .+.|..++..|--+|+.++.+.....+.
T Consensus 69 ~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~-ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~ 147 (514)
T KOG0166|consen 69 ELMLAALYSDDPQQQLTATQAFRKLLSKERN-PPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV 147 (514)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHccCCC-CCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence 4678899999999999999999999977432 111111 12233334445 4788999999999999998664444444
Q ss_pred hh-hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhc--hhH-----HHHHHhhhhhhcCChhHHHHHHHHHHHHHHhcc
Q 000599 79 HF-NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS--PTI-----IVERAGSYAWTHRSWRVREEFARTVTSAIGLFS 150 (1400)
Q Consensus 79 ~~-~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~--p~~-----V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg 150 (1400)
++ ...+|.++.-+-.+.+.|++.|.-+|-.++--.. .+. +++.|+. .+....+-.-.-.+.|..+=+...+
T Consensus 148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~-~l~~~~~~~~lRn~tW~LsNlcrgk 226 (514)
T KOG0166|consen 148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLR-LLNKSDKLSMLRNATWTLSNLCRGK 226 (514)
T ss_pred cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHH-HhccccchHHHHHHHHHHHHHHcCC
Confidence 33 3578889988999999999999999998874211 122 3445554 3433333222334667666555544
Q ss_pred C--cchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhh
Q 000599 151 A--TELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDEL 198 (1400)
Q Consensus 151 ~--~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L 198 (1400)
. ..+...++++|.+..++.+.|++|..-|.+.+..|-....+.+...+
T Consensus 227 ~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi 276 (514)
T KOG0166|consen 227 NPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVI 276 (514)
T ss_pred CCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 2 23343489999999999999999999999999988765555544444
No 49
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=97.36 E-value=0.69 Score=56.38 Aligned_cols=180 Identities=14% Similarity=0.098 Sum_probs=119.1
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHH-hhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHH
Q 000599 7 LARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVP 85 (1400)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~-~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp 85 (1400)
++++..-..|.+|+..|.+..-.-+. ..-++.++-+++ .-+.|..-. ..+..|..+.-+++....+|+..|+-
T Consensus 176 kvKNG~~~mR~~~lRiLtdkav~fg~---~~vfnkvLp~lm~r~LeDqerh---l~vk~idr~Ly~lddl~~pyvhkILv 249 (975)
T COG5181 176 KVKNGGKRMRMEGLRILTDKAVNFGA---AAVFNKVLPMLMSRELEDQERH---LVVKLIDRLLYGLDDLKVPYVHKILV 249 (975)
T ss_pred hcccCCchhhHHHHHHHHHHhhcccH---HHHHHHHHHHHHhhhhhhhhhH---hHHHHHHHHHHhcccccccceeeEEE
Confidence 44555666777777777655433111 111222222222 234443322 33334444444556566677776665
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHH
Q 000599 86 AVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPIL 165 (1400)
Q Consensus 86 ~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~ 165 (1400)
.+-.-+-|.....|-..++.++.+...++..+.+..+-+ -+.||.+-||.-+-..+.-..+.||. ..++|++.
T Consensus 250 Vv~pllided~~~r~~g~eii~nL~~~~Gl~~~vs~mrp-Di~~~deYVRnvt~ra~~vva~algv------~~llpfl~ 322 (975)
T COG5181 250 VVGPLLIDEDLKRRCMGREIILNLVYRCGLGFSVSSMRP-DITSKDEYVRNVTGRAVGVVADALGV------EELLPFLE 322 (975)
T ss_pred EeeccccCccHHHhcccHHHHHHHHHHhccceeeeeccC-CcccccHHHHHHHHHHHHHHHHhhCc------HHHHHHHH
Confidence 554455566666788888899999888888777777665 68999999999887777777777776 46677777
Q ss_pred HhhCCC-ChhHHHHHHHHHHHHHhhhChhHHHhhh
Q 000599 166 QMLNDP-NPGVREAAILCIEEMYTYAGPQFRDELH 199 (1400)
Q Consensus 166 ~~L~d~-n~~VR~aA~~~l~~l~~~~G~~l~~~L~ 199 (1400)
.+.... .-+-|-.++.++-.|....|-....+|.
T Consensus 323 a~c~SrkSw~aRhTgiri~qqI~~llG~s~l~hl~ 357 (975)
T COG5181 323 ALCGSRKSWEARHTGIRIAQQICELLGRSRLSHLG 357 (975)
T ss_pred HHhcCccchhhhchhhHHHHHHHHHhCccHHhhhh
Confidence 666766 6688999999999999999988877776
No 50
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=97.34 E-value=0.026 Score=72.47 Aligned_cols=137 Identities=16% Similarity=0.149 Sum_probs=87.6
Q ss_pred HHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHH
Q 000599 286 FEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1400)
Q Consensus 286 l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~ 365 (1400)
+..+...+..++.-..|..|...+..++...+.++.. ..++..+.....+.+--+-+....+|..|+..+|..|
T Consensus 519 ~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G~~w~~-----~~~i~k~L~~~~q~~y~~R~t~l~si~~la~v~g~ei- 592 (759)
T KOG0211|consen 519 LAELLRTWLPDHVYSIREAAARNLPALVETFGSEWAR-----LEEIPKLLAMDLQDNYLVRMTTLFSIHELAEVLGQEI- 592 (759)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhCcchhH-----HHhhHHHHHHhcCcccchhhHHHHHHHHHHHHhccHH-
Confidence 4444444456677889999999999888654444442 1233223333333333333444578889999999855
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCc---chHHHHHHHhhhCCCHHHHHHHHHH
Q 000599 366 ACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV---RVLPRIADCAKNDRNAVLRARCCEY 429 (1400)
Q Consensus 366 ~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~---rll~~i~~~l~~~Kn~~~R~~~~~~ 429 (1400)
+.+.++|.+..+..|....||=.+...+..|+.....+ ..+-.+...+..+-+..+|..+..-
T Consensus 593 -~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll~~L~~d~~~dvr~~a~~a 658 (759)
T KOG0211|consen 593 -TCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLLETLSSDQELDVRYRAILA 658 (759)
T ss_pred -HHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHHHHhccCcccchhHHHHHH
Confidence 78899999999999999999988888888888776543 2233333344344444455444333
No 51
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=97.26 E-value=0.23 Score=62.48 Aligned_cols=337 Identities=15% Similarity=0.123 Sum_probs=200.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHH-HHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVD-CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~-~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+.++.|..+ ..|++.+.+|...+.... .+..+.. .+...+.++|......++++|..+.... ....-..
T Consensus 7 ~~l~~l~~~--~~~~~~L~~l~~~~~~~~------~l~~~~~~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l~~ 76 (503)
T PF10508_consen 7 ELLEELSSK--AERLEALPELKTELSSSP------FLERLPEPVLFDCLNTSNREQVELICDILKRLLSAL--SPDSLLP 76 (503)
T ss_pred HHHHHHhcc--cchHHHHHHHHHHHhhhh------HHHhchHHHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHHHH
Confidence 455566666 578888888888776532 1122211 1445677778888888999999888653 2223366
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHH-------hchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcch
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEV-------SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATEL 154 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~-------~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l 154 (1400)
.+.+.|..-|....+.||..+...|..+.+. .....++..++. ++.+.+-.|...++..|........ .+
T Consensus 77 ~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~-~L~~~d~~Va~~A~~~L~~l~~~~~--~~ 153 (503)
T PF10508_consen 77 QYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQ-CLRDPDLSVAKAAIKALKKLASHPE--GL 153 (503)
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHH-HHcCCcHHHHHHHHHHHHHHhCCch--hH
Confidence 6778888888889999999988888777542 222456677775 8999999999999988876654211 11
Q ss_pred h--hhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcc
Q 000599 155 T--LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTF 232 (1400)
Q Consensus 155 ~--l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~ 232 (1400)
. +...++..+..++..+|..||-...++++.+.++-.+.+ ......+
T Consensus 154 ~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~-~~~~~sg------------------------------ 202 (503)
T PF10508_consen 154 EQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAA-EAVVNSG------------------------------ 202 (503)
T ss_pred HHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHH-HHHHhcc------------------------------
Confidence 1 112337888889988899999999999888865532211 1111000
Q ss_pred hhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHH
Q 000599 233 AALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGL 312 (1400)
Q Consensus 233 ~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~l 312 (1400)
.++++...+.+ +|=-.|..+++-|..+
T Consensus 203 ----------------------------------------------------ll~~ll~eL~~-dDiLvqlnalell~~L 229 (503)
T PF10508_consen 203 ----------------------------------------------------LLDLLLKELDS-DDILVQLNALELLSEL 229 (503)
T ss_pred ----------------------------------------------------HHHHHHHHhcC-ccHHHHHHHHHHHHHH
Confidence 02222222222 3444455666666555
Q ss_pred HhcCCCCchhHH---HhHHHHHHHHHhhhccc--chHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHH
Q 000599 313 VLGGAADHPCFR---GLLKQLVGPLSTQLSDR--RSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIA 387 (1400)
Q Consensus 313 l~~~~~~~~~f~---~~L~~L~~~L~~~l~Dl--rs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~ 387 (1400)
..... . -.|+ ..+..|...+...-.|. +.-++--.+...+.++..-...+-.....|+..|+..+......++
T Consensus 230 a~~~~-g-~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~ 307 (503)
T PF10508_consen 230 AETPH-G-LQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIR 307 (503)
T ss_pred HcChh-H-HHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHH
Confidence 54211 0 0121 12233333333333332 3333333345555555542223333334566677777777778889
Q ss_pred HHHHHHHHHHHHhCCCcc------------hHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCC
Q 000599 388 ESSDNCIKTMLRNCKAVR------------VLPRIADCAKNDRNAVLRARCCEYALLVLEHWPD 439 (1400)
Q Consensus 388 ~sa~~al~~i~~~~~~~r------------ll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~ 439 (1400)
..|..|+..|..+..-.. ++..+.... .+-...+|.++.+.+..++.....
T Consensus 308 ~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~-~~~~~~lk~r~l~al~~il~~~~~ 370 (503)
T PF10508_consen 308 EVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAI-KSGSTELKLRALHALASILTSGTD 370 (503)
T ss_pred HHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHh-cCCchHHHHHHHHHHHHHHhcCCC
Confidence 999999988875443222 233333333 222457999999999999865543
No 52
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=97.23 E-value=0.015 Score=68.04 Aligned_cols=189 Identities=22% Similarity=0.203 Sum_probs=121.7
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC--hHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhh--hhhH
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLT--SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG--EHFK 77 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~--~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~--~~~~ 77 (1400)
+++++.+.+|.-+.|.+|++.+...+....- .+ ......+++.+.+.++-....=+..|+.++..++-.+| ....
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~-~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ 124 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYL-PDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSE 124 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhccc-HHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHH
Confidence 5788999999999999999999999976431 11 12245677777777776555667788899999987765 5666
Q ss_pred hhhhhhHHHHHHHhCCCCh--hHHHHHHHHHHHHHH--HhchhHHHH--HHhhhhhh---------------cCChhHHH
Q 000599 78 LHFNALVPAVVERLGDAKQ--PVRDAARRLLLTLME--VSSPTIIVE--RAGSYAWT---------------HRSWRVRE 136 (1400)
Q Consensus 78 ~~~~~ilp~LleKLgD~K~--~vre~a~~~L~~l~e--~~~p~~V~e--~l~~~~~~---------------~Knpkvr~ 136 (1400)
..+..+.|.|..-+.|... .+|..+..+|-.+.= ...++.+.+ ..++..|. ..++.+..
T Consensus 125 ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~ 204 (309)
T PF05004_consen 125 EIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVA 204 (309)
T ss_pred HHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHH
Confidence 7777888888777777543 355555554444332 222322221 11110110 11345655
Q ss_pred HHHHHHHHHHHhccCcch-hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 137 EFARTVTSAIGLFSATEL-TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 137 ~~l~~L~~~l~~fg~~~l-~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
.+|..-.-.+.......+ ......+|.++.+|+..+.+||-+|-+.|.-||....
T Consensus 205 aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~ 260 (309)
T PF05004_consen 205 AALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRIAAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence 554433333322222111 2226789999999999999999999999999997655
No 53
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.6 Score=58.66 Aligned_cols=164 Identities=17% Similarity=0.275 Sum_probs=105.5
Q ss_pred ChHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCC
Q 000599 772 SLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKP 851 (1400)
Q Consensus 772 ~l~~~l~~~~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~ 851 (1400)
||...|. |..=++..||+..+-.++.+|.. ...+|-..++-..--|.+|-.+.-=.|......
T Consensus 39 dL~~lLd-----Snkd~~KleAmKRIia~iA~G~d--------vS~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEe---- 101 (968)
T KOG1060|consen 39 DLKQLLD-----SNKDSLKLEAMKRIIALIAKGKD--------VSLLFPAVVKNVASKNIEVKKLVYVYLLRYAEE---- 101 (968)
T ss_pred HHHHHHh-----ccccHHHHHHHHHHHHHHhcCCc--------HHHHHHHHHHHhhccCHHHHHHHHHHHHHHhhc----
Confidence 4666554 88889999999999999998775 224555666666667777765555555554443
Q ss_pred chhHHHHHHHHHHHh-hCCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccC---CCchhHHHHHHHHHHHHhh-hh
Q 000599 852 FESYMERILPHVFSR-LIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQ---RSPKAKLAVIEFAISSLNK-HA 926 (1400)
Q Consensus 852 l~~~l~~ll~~L~~k-lgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~---~~~k~k~~~L~~l~~~l~~-~~ 926 (1400)
++-+..|=-.-|.| |+|.+.-+|+-|..+|.-|+ ...+.+.++-.+.+. -+|.||..+-.- +.+ |.
T Consensus 102 -qpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR----vp~IaPI~llAIk~~~~D~s~yVRk~AA~A----IpKLYs 172 (968)
T KOG1060|consen 102 -QPDLALLSINTFQKALKDPNQLIRASALRVLSSIR----VPMIAPIMLLAIKKAVTDPSPYVRKTAAHA----IPKLYS 172 (968)
T ss_pred -CCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHHhcCCcHHHHHHHHHh----hHHHhc
Confidence 23333333344555 79999999999999999988 334444444333221 568888865443 333 43
Q ss_pred cCCCCCCCcchHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHh
Q 000599 927 MNSEGSGNLGILKLWLAKLTP-LVHDKNTKLKEAAITCIISVY 968 (1400)
Q Consensus 927 ~~~~~~~~~~~~~~~l~~i~~-l~~dks~~vR~aA~~~l~~ly 968 (1400)
.+++ .+..|..++. |+.|+++-|-.+|.-+.-.+|
T Consensus 173 Ld~e-------~k~qL~e~I~~LLaD~splVvgsAv~AF~evC 208 (968)
T KOG1060|consen 173 LDPE-------QKDQLEEVIKKLLADRSPLVVGSAVMAFEEVC 208 (968)
T ss_pred CChh-------hHHHHHHHHHHHhcCCCCcchhHHHHHHHHhc
Confidence 4443 2334555554 689999999988876655544
No 54
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.12 E-value=0.019 Score=74.52 Aligned_cols=198 Identities=17% Similarity=0.199 Sum_probs=152.4
Q ss_pred hhHHHHHHHHHHHHHhcCChh-hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Q 000599 1184 PTSKHGALQQLIKASVANDHS-IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 1262 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~-~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~ 1262 (1400)
...++.+..-|.+++...... ...++.+.|...|.+.+.+....++...|.+|..|++.++..+.+++.-.|+.+|-.+
T Consensus 668 ~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~EvIL~~ 747 (1176)
T KOG1248|consen 668 TKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPEVILSL 747 (1176)
T ss_pred HHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhc
Confidence 456666777777777654333 3446788888889999988777789899999999999999888899999999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHh--h-----cCh-h----hHHHhhhhhccCCchhhHhHH-HHHHHHHHhhcCHHHHHhhhh
Q 000599 1263 KDAVPKVSNEAEHCLTVVLS--Q-----YDP-F----RCLSVIVPLLVTEDEKTLVTC-INCLTKLVGRLSQEELMAQLP 1329 (1400)
Q Consensus 1263 ~D~~k~V~~aA~~al~~i~~--~-----~~p-~----~~l~~l~~~l~s~~~~~~~~a-lk~l~~lv~~~~~~~l~~~l~ 1329 (1400)
++-...-++.|-+|+..|+. . ..| . ..|.+|..++..+ ..-..++ |=.++.++.......=...++
T Consensus 748 Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~~~~~lnefl~~Isagl~gd-~~~~~as~Ivai~~il~e~~~~ld~~~l~ 826 (1176)
T KOG1248|consen 748 KEVNVKARRNAFALLVFIGAIQSSLDDGNEPASAILNEFLSIISAGLVGD-STRVVASDIVAITHILQEFKNILDDETLE 826 (1176)
T ss_pred ccccHHHHhhHHHHHHHHHHHHhhhcccccchHHHHHHHHHHHHhhhccc-HHHHHHHHHHHHHHHHHHHhccccHHHHH
Confidence 98888889999999998882 2 122 2 2556666665333 3323333 556667776555333345778
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-cchhhhhhcHHHHHHHHH
Q 000599 1330 SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTI 1382 (1400)
Q Consensus 1330 ~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~-~~p~l~~L~~s~~kll~~ 1382 (1400)
.++..+.-.+...+.++|++|+..+-.++..+++. +.||++.|-++-.+|+..
T Consensus 827 ~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls~d 880 (1176)
T KOG1248|consen 827 KLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALSHD 880 (1176)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHHHh
Confidence 88999999999999999999999999999999985 779999999998888765
No 55
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.05 E-value=1.7 Score=55.01 Aligned_cols=181 Identities=15% Similarity=0.134 Sum_probs=115.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhh---hhHh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE---HFKL 78 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~---~~~~ 78 (1400)
.++-+.|++.+--.|+.|+.++.+++... +.-++.|+....+.++|.|..|...++.++..+++.... .|+.
T Consensus 145 peVe~Ll~~~~~~irKKA~Lca~r~irK~-----P~l~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~~l~~fr~ 219 (866)
T KOG1062|consen 145 PEVERLLQHRDPYIRKKAALCAVRFIRKV-----PDLVEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPDALSYFRD 219 (866)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHHHcC-----chHHHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHHHHHHHHH
Confidence 35677889999999999999999998652 223456777778899999999999999999999876322 3333
Q ss_pred hhhhhHHH-----------------------------HHHHhCCCChhHHHHHHHHHHHHHHH------hchhHHHHHHh
Q 000599 79 HFNALVPA-----------------------------VVERLGDAKQPVRDAARRLLLTLMEV------SSPTIIVERAG 123 (1400)
Q Consensus 79 ~~~~ilp~-----------------------------LleKLgD~K~~vre~a~~~L~~l~e~------~~p~~V~e~l~ 123 (1400)
.+..++-. ++.-||...+...|.-.++|..++.. .+-..+.|++.
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~ 299 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVR 299 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHH
Confidence 22222211 23234555555566666666666642 22334555555
Q ss_pred hhhhhcCChhHHHHHHHHHHHHHHhccC--cchhh-------------hhhhHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 000599 124 SYAWTHRSWRVREEFARTVTSAIGLFSA--TELTL-------------QRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1400)
Q Consensus 124 ~~~~~~Knpkvr~~~l~~L~~~l~~fg~--~~l~l-------------~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~ 187 (1400)
.+.-=.-|+..|+-.+++|...+..-.. +.+.+ ...-=..++.||+|+|..+|..|.+++-.|-
T Consensus 300 TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lv 378 (866)
T KOG1062|consen 300 TIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALV 378 (866)
T ss_pred HHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHh
Confidence 4333345566777666666554432111 00000 0123356789999999999999999876654
No 56
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.99 E-value=0.37 Score=60.70 Aligned_cols=152 Identities=18% Similarity=0.187 Sum_probs=110.6
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHH-HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVT-SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~-~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+++..+.|.++-++.-||-.+.-++.+. .|+. -+...+.+-++.+|.-|+-.||.+|+.++.. ..+.
T Consensus 74 eclKLias~~f~dKRiGYLaamLlLdE~------qdvllLltNslknDL~s~nq~vVglAL~alg~i~s~------Emar 141 (866)
T KOG1062|consen 74 ECLKLIASDNFLDKRIGYLAAMLLLDER------QDLLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP------EMAR 141 (866)
T ss_pred HHHHHhcCCCchHHHHHHHHHHHHhccc------hHHHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH------HHhH
Confidence 5677888899988888998887777542 2333 3456677888999999999999999988632 3456
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhH---HHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhh
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI---IVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQR 158 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~---V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k 158 (1400)
.+.|-+-+.|...++.||.+|.-|+..++... |+- .+.... ..+..|++.|....+..+.+.++. +...+...|
T Consensus 142 dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~-P~l~e~f~~~~~-~lL~ek~hGVL~~~l~l~~e~c~~-~~~~l~~fr 218 (866)
T KOG1062|consen 142 DLAPEVERLLQHRDPYIRKKAALCAVRFIRKV-PDLVEHFVIAFR-KLLCEKHHGVLIAGLHLITELCKI-SPDALSYFR 218 (866)
T ss_pred HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcC-chHHHHhhHHHH-HHHhhcCCceeeeHHHHHHHHHhc-CHHHHHHHH
Confidence 67888888889999999999999999998753 321 122222 357789999999999888887654 333344336
Q ss_pred hhHHHHHHhhC
Q 000599 159 AILPPILQMLN 169 (1400)
Q Consensus 159 ~~lp~l~~~L~ 169 (1400)
.+++.++..|.
T Consensus 219 ~l~~~lV~iLk 229 (866)
T KOG1062|consen 219 DLVPSLVKILK 229 (866)
T ss_pred HHHHHHHHHHH
Confidence 67777766553
No 57
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.96 E-value=0.052 Score=58.49 Aligned_cols=161 Identities=14% Similarity=0.264 Sum_probs=108.6
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 1263 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~ 1263 (1400)
+.-|..++-.+..+..--. ...+..+..+...|.|.++.||..|+.+|.+|+..---+++ ..++..++.++.
T Consensus 2 ~~vR~n~i~~l~DL~~r~~-----~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l~ 73 (178)
T PF12717_consen 2 PSVRNNAIIALGDLCIRYP-----NLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLLV 73 (178)
T ss_pred HHHHHHHHHHHHHHHHhCc-----HHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHHc
Confidence 4567778888877765332 22455566888999999999999999999999984333333 344577777889
Q ss_pred CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---C---------CchhhHhHHHHHHHHHHhhcC-HHHHHhhhhh
Q 000599 1264 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---T---------EDEKTLVTCINCLTKLVGRLS-QEELMAQLPS 1330 (1400)
Q Consensus 1264 D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s---------~~~~~~~~alk~l~~lv~~~~-~~~l~~~l~~ 1330 (1400)
|+..+|+..|..++..+.....|..+...+..++. . .+...+. +++..+++.+. ..+-...+..
T Consensus 74 D~~~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~---~I~~fll~~i~~d~~~~~l~~k 150 (178)
T PF12717_consen 74 DENPEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRK---KIYKFLLDFIDKDKQKESLVEK 150 (178)
T ss_pred CCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHH---HHHHHHHHHcCcHHHHHHHHHH
Confidence 99999999999999999988777765555555443 1 1222333 44445555555 3334444444
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHH
Q 000599 1331 FLPALFEAFGNQSADVRKTVVFCLV 1355 (1400)
Q Consensus 1331 liP~l~~~~~d~~seVRkaAv~~lv 1355 (1400)
+..-+..+..+.+..+-+-+.+||-
T Consensus 151 l~~~~~~~~~~~~~~~~~d~~~~l~ 175 (178)
T PF12717_consen 151 LCQRFLNAVVDEDERVLRDILYCLS 175 (178)
T ss_pred HHHHHHHHcccccHHHHHHHHHHHH
Confidence 5555555554667778777777763
No 58
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=96.63 E-value=0.011 Score=74.42 Aligned_cols=151 Identities=18% Similarity=0.272 Sum_probs=126.3
Q ss_pred hHHH-HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc-ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHh
Q 000599 1205 IWTK-YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLS 1282 (1400)
Q Consensus 1205 ~~~~-~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~-~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~ 1282 (1400)
.|.+ +|.+|...|..-+......++-.=|..|.+++++.+-. +.+++..++|-||+++.=+..+|+-.+..++..+..
T Consensus 859 LykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~ 938 (1030)
T KOG1967|consen 859 LYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLT 938 (1030)
T ss_pred HHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHH
Confidence 3444 78899999998888434447777788999999988754 789999999999999988778999999999988887
Q ss_pred hcCh------hhHHHhhhhhccCCc---hhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000599 1283 QYDP------FRCLSVIVPLLVTED---EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1353 (1400)
Q Consensus 1283 ~~~p------~~~l~~l~~~l~s~~---~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~ 1353 (1400)
..++ ..++|.+..+=.+.+ --+|..|+++|..|.++.|+..+...-|.++-+|.+.++|.+--|||.|+.|
T Consensus 939 ~~~tL~t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 939 ESETLQTEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hccccchHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 6555 347777766655544 3589999999999999999999999999999999999999999999999998
Q ss_pred HH
Q 000599 1354 LV 1355 (1400)
Q Consensus 1354 lv 1355 (1400)
==
T Consensus 1019 R~ 1020 (1030)
T KOG1967|consen 1019 RQ 1020 (1030)
T ss_pred hh
Confidence 44
No 59
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=96.63 E-value=0.0027 Score=54.04 Aligned_cols=53 Identities=25% Similarity=0.331 Sum_probs=47.4
Q ss_pred hhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000599 1302 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1355 (1400)
Q Consensus 1302 ~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv 1355 (1400)
|++|..|+..|+.+. ....+.+.++++.++|.|...+.|.+++||.+|.+||-
T Consensus 1 p~vR~~A~~aLg~l~-~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg 53 (55)
T PF13513_consen 1 PRVRRAAAWALGRLA-EGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALG 53 (55)
T ss_dssp HHHHHHHHHHHHCTT-TTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHhhHh-cccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 678999999999976 44558899999999999999999999999999999874
No 60
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.55 E-value=0.015 Score=54.44 Aligned_cols=86 Identities=26% Similarity=0.322 Sum_probs=67.0
Q ss_pred HHHHHHHh-CCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHH
Q 000599 84 VPAVVERL-GDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILP 162 (1400)
Q Consensus 84 lp~LleKL-gD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp 162 (1400)
+|.|++.| .|..+.+|..+..+|..+ ....+++.++. .+++++|.||..++.+|. .+|. +..++
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~----~~~~~~~~L~~-~l~d~~~~vr~~a~~aL~----~i~~------~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGEL----GDPEAIPALIE-LLKDEDPMVRRAAARALG----RIGD------PEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCC----THHHHHHHHHH-HHTSSSHHHHHHHHHHHH----CCHH------HHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHhHHHHHHH-HHcCCCHHHHHHHHHHHH----HhCC------HHHHH
Confidence 57899999 899999998888887744 33477888887 789999999998888774 3442 56889
Q ss_pred HHHHhhCCC-ChhHHHHHHHHHH
Q 000599 163 PILQMLNDP-NPGVREAAILCIE 184 (1400)
Q Consensus 163 ~l~~~L~d~-n~~VR~aA~~~l~ 184 (1400)
.+.+++.|. +..||.+|...|+
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhcC
Confidence 999988764 5667999998874
No 61
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.50 E-value=0.032 Score=67.98 Aligned_cols=187 Identities=18% Similarity=0.254 Sum_probs=139.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 1248 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~ 1248 (1400)
+..||+.+..... -.-.+.+.=.|..+-+...+....+....+|..|...+.+.|..|..-|+..|.+|...-.....
T Consensus 196 l~pLl~~l~~~~~--~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq 273 (514)
T KOG0166|consen 196 LDPLLRLLNKSDK--LSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQ 273 (514)
T ss_pred hHHHHHHhccccc--hHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHH
Confidence 5667777655431 12344455566666666555544467999999999999999999999999999999974333333
Q ss_pred ccHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-------hHHHhhhhhcc-CCchhhHhHHHHHHHHHHhhc
Q 000599 1249 DSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRL 1319 (1400)
Q Consensus 1249 ~~~e-~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~ 1319 (1400)
-.++ -++|.|+++++++...|+..|-.++..|++...-. ..+++|..++. +.+..++-.|+-.|..+. .-
T Consensus 274 ~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNIt-AG 352 (514)
T KOG0166|consen 274 MVIDAGVVPRLVDLLGHSSPKVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNIT-AG 352 (514)
T ss_pred HHHHccchHHHHHHHcCCCcccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhh-cC
Confidence 2333 37899999999998888888888887777665543 37888888887 555557888888888887 35
Q ss_pred CHHHHHhhh-hhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1320 SQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1320 ~~~~l~~~l-~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
.++++...+ ..++|.|+..+...+=..||.|.+++-.++
T Consensus 353 ~~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~t 392 (514)
T KOG0166|consen 353 NQEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLT 392 (514)
T ss_pred CHHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhc
Confidence 556666543 589999999999999999999999876543
No 62
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.50 E-value=0.017 Score=57.10 Aligned_cols=104 Identities=18% Similarity=0.243 Sum_probs=84.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh-------hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHh
Q 000599 1254 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMA 1326 (1400)
Q Consensus 1254 ~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p-------~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~ 1326 (1400)
+++.+++.+.|....++..|-.|+..++...+. ..+++.+..++.+.+...+..|+..|..+....+ .....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~-~~~~~ 86 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE-DNKLI 86 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH-HHHHH
Confidence 677888888888889999999999998876433 2488888888888889999999999999996443 33333
Q ss_pred -hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1327 -QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1327 -~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
.-..++|.|.+.+++.+.++|+.|..++..++
T Consensus 87 ~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 87 VLEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 33458999999999999999999999988765
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=96.49 E-value=0.009 Score=59.03 Aligned_cols=107 Identities=19% Similarity=0.203 Sum_probs=81.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHh-HH-HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-VT-SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH 79 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-~~-~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~ 79 (1400)
+.+++.|.+.+|..|..++..|..+....+.. ... +. ..++.+.+.+.|.|..|...++.+|..++..........
T Consensus 10 ~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 10 PALVSLLSSSDENVQREAAWALSNLSAGNNDN--IQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHH--HHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 45788899999999999999999988652211 111 11 455667788899999999999999999986543333333
Q ss_pred h-hhhHHHHHHHhCCCChhHHHHHHHHHHHHH
Q 000599 80 F-NALVPAVVERLGDAKQPVRDAARRLLLTLM 110 (1400)
Q Consensus 80 ~-~~ilp~LleKLgD~K~~vre~a~~~L~~l~ 110 (1400)
. ..+++.|++.+.+....+++.+..+|..++
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~ 119 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSNLA 119 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHHhh
Confidence 3 348999999999988889999998888775
No 64
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.48 E-value=0.34 Score=63.34 Aligned_cols=295 Identities=19% Similarity=0.212 Sum_probs=190.2
Q ss_pred HHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhh----hhHhhhhhhHHHHH
Q 000599 13 TKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE----HFKLHFNALVPAVV 88 (1400)
Q Consensus 13 Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~----~~~~~~~~ilp~Ll 88 (1400)
-..|++|++-|..+-.- ..+..-++.++-.+.-++.|+-..|...|+++|+.+....++ +..-+...++|.|-
T Consensus 437 ~~tK~~ALeLl~~lS~~---i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 437 IQTKLAALELLQELSTY---IDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred chhHHHHHHHHHHHhhh---cchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhH
Confidence 45678888877766532 222344666777777789999999999999999998765543 45567778899988
Q ss_pred HHhCC-CChhHHHHHHHHHHHHHHHhc-hhHHHHHHhhh-hhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHH
Q 000599 89 ERLGD-AKQPVRDAARRLLLTLMEVSS-PTIIVERAGSY-AWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPIL 165 (1400)
Q Consensus 89 eKLgD-~K~~vre~a~~~L~~l~e~~~-p~~V~e~l~~~-~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~ 165 (1400)
.-+-| ....||-+-..+|-.|++... .......+-.. ..+.-|..... -..|......+...+-..+.
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~---------~~~~~~~~~~L~~~V~~~v~ 584 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAP---------EQNYNTELQALHHTVEQMVS 584 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCccccccc---------ccccchHHHHHHHHHHHHHH
Confidence 88888 666677777777777776421 11111111110 12222221000 00111111223344555667
Q ss_pred HhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCC
Q 000599 166 QMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPK 245 (1400)
Q Consensus 166 ~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~ 245 (1400)
.+|.|+.+.||-+=++-++.||.+.|.. +
T Consensus 585 sLlsd~~~~Vkr~Lle~i~~LC~FFGk~-----------------------k---------------------------- 613 (1431)
T KOG1240|consen 585 SLLSDSPPIVKRALLESIIPLCVFFGKE-----------------------K---------------------------- 613 (1431)
T ss_pred HHHcCCchHHHHHHHHHHHHHHHHhhhc-----------------------c----------------------------
Confidence 8999999999999999999988776640 0
Q ss_pred CCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCC-CCchhHH
Q 000599 246 KSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGA-ADHPCFR 324 (1400)
Q Consensus 246 r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~-~~~~~f~ 324 (1400)
+ + ++ .+..+. .|.+++||.-|..-.+.|-++.---+ ...++
T Consensus 614 -------s--N------------------D~--------iLshLi-TfLNDkDw~LR~aFfdsI~gvsi~VG~rs~se-- 655 (1431)
T KOG1240|consen 614 -------S--N------------------DV--------ILSHLI-TFLNDKDWRLRGAFFDSIVGVSIFVGWRSVSE-- 655 (1431)
T ss_pred -------c--c------------------cc--------hHHHHH-HHhcCccHHHHHHHHhhccceEEEEeeeeHHH--
Confidence 0 0 01 122333 34467899999999998875532111 11122
Q ss_pred HhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCC-
Q 000599 325 GLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF-EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK- 402 (1400)
Q Consensus 325 ~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f-~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~- 402 (1400)
.|+.-|.+.+.|.--.|+..|+.++..|.+. | .| .+++..++...+-.+..-+.-||.++..-|.++.+..+
T Consensus 656 ----yllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~-~-ll~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~ls~ 729 (1431)
T KOG1240|consen 656 ----YLLPLLQQGLTDGEEAVIVSALGSLSILIKL-G-LLRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQLSA 729 (1431)
T ss_pred ----HHHHHHHHhccCcchhhHHHHHHHHHHHHHh-c-ccchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhhhh
Confidence 2555567889999999999999999988754 2 33 35677788888888888888999998888888887765
Q ss_pred ---CcchHHHHHHHh
Q 000599 403 ---AVRVLPRIADCA 414 (1400)
Q Consensus 403 ---~~rll~~i~~~l 414 (1400)
+-+++|.|-..+
T Consensus 730 advyc~l~P~irpfl 744 (1431)
T KOG1240|consen 730 ADVYCKLMPLIRPFL 744 (1431)
T ss_pred hhheEEeehhhHHhh
Confidence 235666665555
No 65
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.46 E-value=0.47 Score=61.01 Aligned_cols=299 Identities=16% Similarity=0.140 Sum_probs=159.7
Q ss_pred cCCcchHH--HHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHh---chhHHHHHHhhhh
Q 000599 52 DNNFKVSQ--GALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS---SPTIIVERAGSYA 126 (1400)
Q Consensus 52 DsN~~V~~--~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~---~p~~V~e~l~~~~ 126 (1400)
+.++.|.. -.++.|+.++.-.|..|....-..+=.+++|+++..+.|+..|..|++.++.++ +|+.++..=..+.
T Consensus 557 ~~kSnv~~~Ci~ld~I~~~a~~~g~~F~~~L~~~ly~vl~k~a~~s~~is~vA~sc~~~I~~a~~y~s~~~lI~en~DYl 636 (1014)
T KOG4524|consen 557 IKKSNEFAVCIVLDSIGTIAAVMGEEFQPELMDYLYPVLEKLASPSEAISQVAQSCALRIADALNYGSPPHLIRENVDYL 636 (1014)
T ss_pred hhccchhhhhhhhhhhHHHHHHhHHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHcCCCChHHHHHhhhHHH
Confidence 34444443 457888899988999999999989999999999999999999999999999753 3554443322221
Q ss_pred hhc-----C----ChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHh---hhChh-
Q 000599 127 WTH-----R----SWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYT---YAGPQ- 193 (1400)
Q Consensus 127 ~~~-----K----npkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~---~~G~~- 193 (1400)
.++ + .|++.. ++..+ +..-+...+++.+.++..+...+......- +..++.-+|. .++..
T Consensus 637 v~sla~~L~~~~~s~~~~~-Vl~vV---l~~s~~~~i~~l~dvvq~i~~~lD~yH~~~---~~~~~~ll~s~ik~~~~~~ 709 (1014)
T KOG4524|consen 637 VNSLALRLNTSGMSPRVPD-VLMVV---LQYSDYGTIPNLKDVVQTIFKLLDYYHGYS---CLQFFQLLHSIIKEMKKKY 709 (1014)
T ss_pred HHHHHHHhccCCCCchhHH-HHHHH---hhcCCCCchhhHHHHHHHHHHHHHHhcccc---hhHHHHHHHHHHHHHhhcc
Confidence 111 1 123222 11111 111122334433566666666555333221 3333333332 22200
Q ss_pred ----H-----HHhhh---c-CCCChhhHHHHHHHHHhhCCCCC-C------CCCCCCcchhhhhccccCCCCCCCccccc
Q 000599 194 ----F-----RDELH---R-HNLPNSMVKDINARLERIQPQIR-S------SDGLPNTFAALEIKTASFNPKKSSPKAKS 253 (1400)
Q Consensus 194 ----l-----~~~L~---~-~~l~~~~l~~i~~~~~~~~~~~~-~------~~~~~~~~~~~~~r~~s~~~~r~~~~~~s 253 (1400)
+ ...+. + .+..|.++++++..........- + ++|....+.. ...
T Consensus 710 ~~~~il~~~~d~~~~~~~k~l~e~p~~~~e~~n~~~d~~~~l~~~~~e~~~~~~~~~~~dn----------------ee~ 773 (1014)
T KOG4524|consen 710 INDEILGHIADQHISQSTKVLNELPTQVKELINDENDLKDDLEPSNFEKDFASKLREPDDN----------------EEP 773 (1014)
T ss_pred ccchhhHHHHHHHHHHHHHHhhcchhhHHHhhhhHHHHHHhhhhHHHHHHhhhhccCCCcc----------------cCc
Confidence 1 11110 0 13355555555543333211100 0 0000000000 000
Q ss_pred cccccccCCC-CC-CccccCCCcccCChHHHHHHHHHHhh---hcCCCCCHHHHHHHHHHHHHHHhcCCCCch-hHHHhH
Q 000599 254 STRETSLFGG-ED-ITEKLIEPIKVYSEKELIREFEKIGS---TLVPDKDWSVRIAAMQRVEGLVLGGAADHP-CFRGLL 327 (1400)
Q Consensus 254 s~~~~~~~g~-~~-~~~~~v~~v~i~s~~dl~~~l~ki~~---~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~-~f~~~L 327 (1400)
..++....+. .+ .+.++++|-.+ +...+|.. .|.++++-..|++||+-+.--+.-- ..|+ .|++.+
T Consensus 774 ~e~~~e~edens~~~d~ep~~~~qv-------~iv~kIl~r~~~~LS~e~l~irvkaLdvl~~gl~~L-a~~~n~LlPlv 845 (1014)
T KOG4524|consen 774 EEREEEVEDENSEYTDTEPILPDQV-------KIVLKILGRGIHLLSHESLRIRVKALDVLSLGLPLL-ATYHNLLLPLV 845 (1014)
T ss_pred CCCCCCccccccCCCCCCCCCChHH-------HHHHHHHHHHHHHhcchhHHHHHHHHHHHHhccHHH-hccchhHhHHH
Confidence 0000000000 00 00112222111 23444443 3457788999999999776332211 3455 566777
Q ss_pred HHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHH-HHHHHHHHHHHHHhch
Q 000599 328 KQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE-ACAEMFIPVLFKLVVI 381 (1400)
Q Consensus 328 ~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~-~~a~~~lp~Ll~~~~~ 381 (1400)
+..=..+..++.+.+--++..||.||-.|....|..+. .+.+.++|.|=..+.+
T Consensus 846 hq~W~~vie~~~~k~~L~v~~a~~~i~~m~~~sgDFv~sR~l~dvlP~l~~~~~~ 900 (1014)
T KOG4524|consen 846 HQTWPSVIECLLCKDPLIVQRAFSCIEQMGKYSGDFVASRFLEDVLPWLKHLCQD 900 (1014)
T ss_pred HhhhhHHHHHHhcCchHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 77778888999999999999999999999999985554 4778888876555443
No 66
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.39 E-value=0.0047 Score=45.95 Aligned_cols=30 Identities=47% Similarity=0.826 Sum_probs=27.2
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
++|.+.++++|++++||.+|..+|+.+.++
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 589999999999999999999999999876
No 67
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=96.38 E-value=0.0049 Score=45.85 Aligned_cols=30 Identities=30% Similarity=0.502 Sum_probs=27.0
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000599 1331 FLPALFEAFGNQSADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1331 liP~l~~~~~d~~seVRkaAv~~lv~~~~~ 1360 (1400)
|+|.+.+.+.|++++||.+|++|+..++.+
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 689999999999999999999999998865
No 68
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=96.35 E-value=0.37 Score=63.02 Aligned_cols=278 Identities=16% Similarity=0.109 Sum_probs=177.6
Q ss_pred HHHHHHHHHHHHHHHhchhHHHHHHhh---hhhhcCChhHHHHHHHHHHHHHHhc---cCcchh-hhhhhHHHHHHhhCC
Q 000599 98 VRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLF---SATELT-LQRAILPPILQMLND 170 (1400)
Q Consensus 98 vre~a~~~L~~l~e~~~p~~V~e~l~~---~~~~~Knpkvr~~~l~~L~~~l~~f---g~~~l~-l~k~~lp~l~~~L~d 170 (1400)
.|-+|.++|..+...++-+..++++++ ..+....++||...+..|++++..- ...... |..-++|.|..+++|
T Consensus 439 tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~eYlfP~L~~l~~d 518 (1431)
T KOG1240|consen 439 TKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFPEYLFPHLNHLLND 518 (1431)
T ss_pred hHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhHhhhhhhhHhhhcc
Confidence 567788888888876666666666665 2577888999999999998876543 222111 336689999999999
Q ss_pred -CChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCc
Q 000599 171 -PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSP 249 (1400)
Q Consensus 171 -~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~ 249 (1400)
.+.-||-+=..+|..+.+. .-.||. ..++.-....-..+-+ + +.+
T Consensus 519 ~~~~~vRiayAsnla~LA~t----A~rFle-------------~~q~~~~~g~~n~~ns-------e----------t~~ 564 (1431)
T KOG1240|consen 519 SSAQIVRIAYASNLAQLAKT----AYRFLE-------------LTQELRQAGMLNDPNS-------E----------TAP 564 (1431)
T ss_pred CccceehhhHHhhHHHHHHH----HHHHHH-------------HHHHHHhcccccCccc-------c----------ccc
Confidence 7778999988888887643 222332 1111111100000000 0 000
Q ss_pred cccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCc-hhHHHhHH
Q 000599 250 KAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADH-PCFRGLLK 328 (1400)
Q Consensus 250 ~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~-~~f~~~L~ 328 (1400)
. +..+ ....+|.+..+.+...|..+.+--.|..-|+.|..|+.--+.+. .++
T Consensus 565 ----------~-~~~~-----------~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~ksND~----- 617 (1431)
T KOG1240|consen 565 ----------E-QNYN-----------TELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEKSNDV----- 617 (1431)
T ss_pred ----------c-cccc-----------hHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcccccc-----
Confidence 0 0000 01234445556666666666666778777888777775433222 233
Q ss_pred HHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCc----
Q 000599 329 QLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV---- 404 (1400)
Q Consensus 329 ~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~---- 404 (1400)
|..-|..-|+|..-++-.--++.|..++-..|.. ..-+.++|-|.+.+.|.-..+...|..|+..+++.-.+.
T Consensus 618 -iLshLiTfLNDkDw~LR~aFfdsI~gvsi~VG~r--s~seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~ll~K~~v 694 (1431)
T KOG1240|consen 618 -ILSHLITFLNDKDWRLRGAFFDSIVGVSIFVGWR--SVSEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGLLRKPAV 694 (1431)
T ss_pred -hHHHHHHHhcCccHHHHHHHHhhccceEEEEeee--eHHHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcccchHHH
Confidence 3333445667765554444456777666666642 245668999999999999999999999999999876554
Q ss_pred -chHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCc
Q 000599 405 -RVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDA 440 (1400)
Q Consensus 405 -rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~ 440 (1400)
.++..+.-.+ .+-|.-+|+.++.++..+.+.|...
T Consensus 695 ~~i~~~v~PlL-~hPN~WIR~~~~~iI~~~~~~ls~a 730 (1431)
T KOG1240|consen 695 KDILQDVLPLL-CHPNLWIRRAVLGIIAAIARQLSAA 730 (1431)
T ss_pred HHHHHhhhhhe-eCchHHHHHHHHHHHHHHHhhhhhh
Confidence 3344444445 5789999999999999999999864
No 69
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.083 Score=68.18 Aligned_cols=211 Identities=20% Similarity=0.197 Sum_probs=136.0
Q ss_pred CCCCCCHHHHHHHhhcCCCCChhHH----HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHh-cCCC-hHHHHHHHHHH
Q 000599 1163 TDAGPSIPQILHLMCNGNDGSPTSK----HGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDAD-SSVREVALSLI 1236 (1400)
Q Consensus 1163 ~d~~~~i~~ll~~l~~~~~~~~~~r----~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l-~d~~-~~vR~~aL~~L 1236 (1400)
+|..+.+...|+++-+...+ +..+ ..-|..+.++++.+......++-+..+++|-..- .|.+ .-+|..-..+.
T Consensus 206 ~D~~~~~~~Fl~~~l~~~s~-~~~n~~~~~g~L~al~ai~k~~~r~d~l~~~~~~~r~L~~~~~~~d~~~llrKllvKl~ 284 (1133)
T KOG1943|consen 206 TDVKDLLLSFLDWLLDCPST-ETPNIFYKLGFLIALLAIFKHGSRKDLLPYSDTGLRMLSVCRESNDGQSLLRKLLVKLV 284 (1133)
T ss_pred ccHHHHHHHHHHHhhcccch-hhhhhHHHHHHHHHHHHHHHhcchhhhHHHhhhhhHhhcccccccccHhHHHHHHHHHH
Confidence 34444566677776655542 4444 4466677777777765554455666666655433 2333 23554434443
Q ss_pred HHH---------------------Hhhc-------------------cccccccHHHHHHHHHHHhcCCcHHHHHHHHHH
Q 000599 1237 NEM---------------------LKNQ-------------------KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHC 1276 (1400)
Q Consensus 1237 ~~l---------------------~~~~-------------------~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~a 1276 (1400)
+.| ..++ +..+..++|-++..|+.+..|....|+..|..-
T Consensus 285 QRiGlv~l~prs~sWrY~rg~rsl~~nl~~~s~~~~~~~~~~~~d~e~edv~eivE~vie~Lls~l~d~dt~VrWSaAKg 364 (1133)
T KOG1943|consen 285 QRIGLVSLKPRSPSWRYSRGTRSLASNLDPDSFAPSEPVILQQDDDEGEDVPEIVEFVIEHLLSALSDTDTVVRWSAAKG 364 (1133)
T ss_pred HHhhheecCCCCcchhhhcccchhhhccCccccccCcccccccccccccccHHHHHHHHHHHHHhccCCcchhhHHHHHH
Confidence 311 1110 111336789999999999999999999999999
Q ss_pred HHHHHhhcChhhHHHhhhhhcc----CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCC--------H
Q 000599 1277 LTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS--------A 1344 (1400)
Q Consensus 1277 l~~i~~~~~p~~~l~~l~~~l~----s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~--------s 1344 (1400)
+..|....|++-.-.+|-.++. -++.-.+.+++=.|.+|.. .| =.+-..+++++|.|.++++-.+ .
T Consensus 365 ~grvt~rlp~~Lad~vi~svid~~~p~e~~~aWHgacLaLAELA~-rG-lLlps~l~dVvplI~kaL~Yd~~~G~~s~G~ 442 (1133)
T KOG1943|consen 365 LGRVTSRLPPELADQVIGSVIDLFNPAEDDSAWHGACLALAELAL-RG-LLLPSLLEDVVPLILKALHYDVRRGQHSVGQ 442 (1133)
T ss_pred HHHHHccCcHHHHHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHh-cC-CcchHHHHHHHHHHHHHhhhhhhhccccccc
Confidence 9999999998654444443332 1223334677777777763 22 1122245678888888876544 4
Q ss_pred HHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHH
Q 000599 1345 DVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ 1376 (1400)
Q Consensus 1345 eVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~ 1376 (1400)
.||.||-|.+|+++..... ++.|++.+|.+.-
T Consensus 443 ~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~L 475 (1133)
T KOG1943|consen 443 HVRDAACYVCWAFARAYSPSDLKPVLQSLASAL 475 (1133)
T ss_pred chHHHHHHHHHHHHhcCChhhhhHHHHHHHHHH
Confidence 5999999999999999985 8999999888764
No 70
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=96.29 E-value=1.1 Score=57.79 Aligned_cols=337 Identities=13% Similarity=0.125 Sum_probs=176.3
Q ss_pred HHHHHHhhhccCCcchHHHHHHHHHHHHHH--hhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH--hchh-
Q 000599 42 LVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV--SSPT- 116 (1400)
Q Consensus 42 lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~--l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~--~~p~- 116 (1400)
++..|.+.+...|..+...++.+|..+.-. ....+ ....++|.|+.-+...+..+.+.+..+|..+.-. .-.+
T Consensus 291 iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK~~m--~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~m 368 (708)
T PF05804_consen 291 IVSLLVKCLDRENEELLILAVTFLKKLSIFKENKDEM--AESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQM 368 (708)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHH--HHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHH
Confidence 344556677888988888888888887521 11122 2346788887667767777888888888877521 1111
Q ss_pred ---HHHHHHhhhhhhcCChhHHHHHHHHHHHHHH-hccCcchhhhhhhHHHHHHh-hCCCChhHHHHHHHHHHHHHhhhC
Q 000599 117 ---IIVERAGSYAWTHRSWRVREEFARTVTSAIG-LFSATELTLQRAILPPILQM-LNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 117 ---~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~-~fg~~~l~l~k~~lp~l~~~-L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
-++..+.. .++. +..+.-++..|...-. .-+-..+.. ..++|.++++ +..++..|.-.++.++..+...--
T Consensus 369 V~~GlIPkLv~-LL~d--~~~~~val~iLy~LS~dd~~r~~f~~-TdcIp~L~~~Ll~~~~~~v~~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 369 VSLGLIPKLVE-LLKD--PNFREVALKILYNLSMDDEARSMFAY-TDCIPQLMQMLLENSEEEVQLELIALLINLALNKR 444 (708)
T ss_pred HHCCCcHHHHH-HhCC--CchHHHHHHHHHHhccCHhhHHHHhh-cchHHHHHHHHHhCCCccccHHHHHHHHHHhcCHH
Confidence 13344444 4443 4455545555544211 111112333 4688998886 455777787666666666543321
Q ss_pred hhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccC
Q 000599 192 PQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLI 271 (1400)
Q Consensus 192 ~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v 271 (1400)
--+.+..- .-++.+.++.-+.+... -... .|.. +. ..|
T Consensus 445 --naqlm~~g----~gL~~L~~ra~~~~D~l------LlKl------------IRNi----S~-----h~~--------- 482 (708)
T PF05804_consen 445 --NAQLMCEG----NGLQSLMKRALKTRDPL------LLKL------------IRNI----SQ-----HDG--------- 482 (708)
T ss_pred --HHHHHHhc----CcHHHHHHHHHhcccHH------HHHH------------HHHH----Hh-----cCc---------
Confidence 11111100 01222222211111000 0000 0000 00 000
Q ss_pred CCcccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcc--cchHHHHHH
Q 000599 272 EPIKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD--RRSSIVKQA 349 (1400)
Q Consensus 272 ~~v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D--lrs~Vv~~A 349 (1400)
+ ...-+.+.+..|...+...++++--.+.|-.|..+...+ .+|..+++. ..+++.|+..+.. ....++-++
T Consensus 483 -~----~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~-ld~~~ll~~-~~llp~L~~~L~~g~~~dDl~LE~ 555 (708)
T PF05804_consen 483 -P----LKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPD-LDWAQLLQE-YNLLPWLKDLLKPGASEDDLLLEV 555 (708)
T ss_pred -h----HHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCC-cCHHHHHHh-CCHHHHHHHHhCCCCCChHHHHHH
Confidence 0 001112233444444444457777777777776665432 233333211 1355555555542 334688889
Q ss_pred HHHHHHHHHHhhhhHHHHHH--HHHHHHHHHhchhh--HHHHHHHHHHHHHHHHhCC-------CcchHHHHHHHhhhCC
Q 000599 350 CHLLCFLSKELLGDFEACAE--MFIPVLFKLVVITV--LVIAESSDNCIKTMLRNCK-------AVRVLPRIADCAKNDR 418 (1400)
Q Consensus 350 c~~l~~La~~Lg~~f~~~a~--~~lp~Ll~~~~~~k--kvi~~sa~~al~~i~~~~~-------~~rll~~i~~~l~~~K 418 (1400)
+.+++.+|.- ......+- .+++.|+.++..+. .-+.-...-+...++.|-. -..+..++++-+ ++|
T Consensus 556 Vi~~gtla~d--~~~A~lL~~sgli~~Li~LL~~kqeDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~-~d~ 632 (708)
T PF05804_consen 556 VILLGTLASD--PECAPLLAKSGLIPTLIELLNAKQEDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLM-HDK 632 (708)
T ss_pred HHHHHHHHCC--HHHHHHHHhCChHHHHHHHHHhhCchHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHh-cCC
Confidence 9998887742 23333332 46788888886654 2333344455555554432 134566888887 899
Q ss_pred CHHHHHHHHHHHHHHHhh
Q 000599 419 NAVLRARCCEYALLVLEH 436 (1400)
Q Consensus 419 n~~~R~~~~~~L~~~L~~ 436 (1400)
|+.+|+.|-..|..+.+.
T Consensus 633 N~~ir~~~d~~Ldii~e~ 650 (708)
T PF05804_consen 633 NAEIRKVCDNALDIIAEY 650 (708)
T ss_pred CHHHHHHHHHHHHHHHHh
Confidence 999999998888877653
No 71
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.2 Score=58.10 Aligned_cols=178 Identities=17% Similarity=0.223 Sum_probs=120.5
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHH-HHHHHHHH
Q 000599 1183 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI-VIEKLLHV 1261 (1400)
Q Consensus 1183 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~-~l~~ll~~ 1261 (1400)
+.+++.+|++.|..++..-+...=.-.++-+...+ ..+++++..+|+.|..+|...+++.+..-+..+|. .+.+|+..
T Consensus 96 ~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll-~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ 174 (342)
T KOG2160|consen 96 DLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL-GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKI 174 (342)
T ss_pred CHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH-HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHH
Confidence 46899999999999987533221111244344444 48899999999999999999999987553333331 45555543
Q ss_pred h-cCCcHHHHHHHHHHHHHHHhhcChhh-------HHHhhhhhccC--CchhhHhHHHHHHHHHHhhcCHHHHHhhhhhh
Q 000599 1262 T-KDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSF 1331 (1400)
Q Consensus 1262 ~-~D~~k~V~~aA~~al~~i~~~~~p~~-------~l~~l~~~l~s--~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~l 1331 (1400)
. .|....+++.|--|+..++.+.+|-. =+.+|.+++++ .+.+.++-++.++..+++.-..+.= -.-+..
T Consensus 175 ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~~~ 253 (342)
T KOG2160|consen 175 LSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASSLG 253 (342)
T ss_pred HccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHHhh
Confidence 3 45557888999999999999988843 24456677766 5677888899999999976654332 222333
Q ss_pred HHHHHHHh-cCCCHHHHHHHHHHHHHHHHHhh
Q 000599 1332 LPALFEAF-GNQSADVRKTVVFCLVDIYIMLG 1362 (1400)
Q Consensus 1332 iP~l~~~~-~d~~seVRkaAv~~lv~~~~~lg 1362 (1400)
++.+...+ ..-+.+++.+++-++...-..+.
T Consensus 254 f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~~~ 285 (342)
T KOG2160|consen 254 FQRVLENLISSLDFEVNEAALTALLSLLSELS 285 (342)
T ss_pred hhHHHHHHhhccchhhhHHHHHHHHHHHHHHh
Confidence 44444433 36677889888887665554444
No 72
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.24 E-value=0.023 Score=53.18 Aligned_cols=85 Identities=25% Similarity=0.373 Sum_probs=69.0
Q ss_pred HHHHHHHh-cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000599 1255 IEKLLHVT-KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333 (1400)
Q Consensus 1255 l~~ll~~~-~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP 1333 (1400)
|+.+++.+ .|+...|+..|..++. .+..+..++.|...+.++++.++..|+..|+.+ + -+..+|
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~----~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i----~-------~~~~~~ 65 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALG----ELGDPEAIPALIELLKDEDPMVRRAAARALGRI----G-------DPEAIP 65 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHH----CCTHHHHHHHHHHHHTSSSHHHHHHHHHHHHCC----H-------HHHTHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHH----HcCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHh----C-------CHHHHH
Confidence 57788877 8888999988777776 557778999999999999999999999988865 2 255799
Q ss_pred HHHHHhcCCC-HHHHHHHHHHH
Q 000599 1334 ALFEAFGNQS-ADVRKTVVFCL 1354 (1400)
Q Consensus 1334 ~l~~~~~d~~-seVRkaAv~~l 1354 (1400)
.|.+.+.|.+ ..||.+|..+|
T Consensus 66 ~L~~~l~~~~~~~vr~~a~~aL 87 (88)
T PF13646_consen 66 ALIKLLQDDDDEVVREAAAEAL 87 (88)
T ss_dssp HHHHHHTC-SSHHHHHHHHHHH
T ss_pred HHHHHHcCCCcHHHHHHHHhhc
Confidence 9999988754 55799998876
No 73
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=96.20 E-value=0.036 Score=68.77 Aligned_cols=144 Identities=16% Similarity=0.232 Sum_probs=105.2
Q ss_pred ChHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHh--cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCc
Q 000599 1225 DSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVT--KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTED 1301 (1400)
Q Consensus 1225 ~~~vR~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~--~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~ 1301 (1400)
+...+. ..++.|......--+++ ...++|.|+..+ +|.++.+..-.-.+.+.+-..-=+.+++++|.+.+.+-+
T Consensus 267 s~~eK~---~Ff~~L~~~l~~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~~eyq~~i~p~l~kLF~~~D 343 (690)
T KOG1243|consen 267 SVEEKQ---KFFSGLIDRLDNFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDEEEYQVRIIPVLLKLFKSPD 343 (690)
T ss_pred cHHHHH---HHHHHHHHHHhhhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccccccccchhhhHHHHhcCcc
Confidence 334454 34444444333444444 445778888765 565566666555555544333222359999999999999
Q ss_pred hhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh-----hhcchhhhhhcH
Q 000599 1302 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG-----KAFLPYLERLNS 1374 (1400)
Q Consensus 1302 ~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lg-----e~~~p~l~~L~~ 1374 (1400)
-++|+.-|.-+.+.+++++.+++.. .|.|++..++.|+++.+|...++||.-+-..|+ .++.+||.++-+
T Consensus 344 r~iR~~LL~~i~~~i~~Lt~~~~~d---~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln~Ellr~~ar~q~ 418 (690)
T KOG1243|consen 344 RQIRLLLLQYIEKYIDHLTKQILND---QIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLNGELLRYLARLQP 418 (690)
T ss_pred hHHHHHHHHhHHHHhhhcCHHhhcc---hhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhcHHHHHHHHhhCc
Confidence 9999999999999999999887754 489999999999999999999999999987766 367788877766
No 74
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=96.12 E-value=0.13 Score=59.88 Aligned_cols=210 Identities=14% Similarity=0.140 Sum_probs=159.1
Q ss_pred hHHHhhcCCCCCCCh--hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCC
Q 000599 773 LSDALSEGLSPSSDW--CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK 850 (1400)
Q Consensus 773 l~~~l~~~~~~s~~W--~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~ 850 (1400)
|...|+ .|-+..+ -.+..+|+-.+.+++.-.. ....+++....-.+.+.|.-+..+|=-.+|+++...+--++.
T Consensus 55 v~krLa--qCL~P~LPsGVH~KaLevY~~IF~~ig~--~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~ 130 (307)
T PF04118_consen 55 VSKRLA--QCLNPALPSGVHQKALEVYEYIFERIGP--DGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGP 130 (307)
T ss_pred HHHHHH--HhcCCCCChHHHHHHHHHHHHHHHhcCH--HHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccH
Confidence 556666 4555444 5789999999999986443 234567777888888899888889999999999999888888
Q ss_pred CchhHHHHHHHHHHHhhCCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhc---
Q 000599 851 PFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAM--- 927 (1400)
Q Consensus 851 ~l~~~l~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~--- 927 (1400)
.+.+.++.++.+|+--|-|...-+.+.+.++|+.+.+.+..+..++.+.-.+. .+|..|..+|.|+...+.+...
T Consensus 131 ~L~p~l~~li~slLpGLede~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl~ii--~sp~~Rl~al~~l~~~l~~~~~~~~ 208 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDEGSEFFDRTLKLLDKLKEAVGDKYFWQCLWLCII--TSPSRRLGALNYLLRRLPKFQNDEL 208 (307)
T ss_pred HHHHHHHHHHHHhccccccCCchHHHHHHHHHHHHHHhcChhHHHHHHHHHHh--cCcchhHHHHHHHHHhCCccccccc
Confidence 99999999999999999888888999999999999999999988888865543 6899999999999877765430
Q ss_pred --CCC--CCCCcchHHHHHHhhcccccCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHH
Q 000599 928 --NSE--GSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLR 992 (1400)
Q Consensus 928 --~~~--~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~ 992 (1400)
... ...-.....+.+..++..++|.+.=|++.+...|+.-+-+... +.... ++..++..|.
T Consensus 209 ~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~--~~~~~--~~~~d~~~Lv 273 (307)
T PF04118_consen 209 SLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLSHFPLDSP--VLQSL--LSPEDKELLV 273 (307)
T ss_pred ccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHHhCCCCCc--chhhh--CCHHHHHHHH
Confidence 000 0011234455666677788999999999999999998865532 21111 5556666543
No 75
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=95.91 E-value=0.13 Score=55.33 Aligned_cols=125 Identities=20% Similarity=0.278 Sum_probs=98.7
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cChh-hHHHhhhhhccCCc
Q 000599 1225 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPF-RCLSVIVPLLVTED 1301 (1400)
Q Consensus 1225 ~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~--~~p~-~~l~~l~~~l~s~~ 1301 (1400)
++.||..++.++..|+. ++.+.++..++.+..++.|+...|++.|-.++..++.. +.+. .++..+...+.+.+
T Consensus 1 ~~~vR~n~i~~l~DL~~----r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~ 76 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCI----RYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDEN 76 (178)
T ss_pred CHHHHHHHHHHHHHHHH----hCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCC
Confidence 46799999999999998 66777888889999999999999999999999888865 3332 24344455667788
Q ss_pred hhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC-----CCHHHHHHHHHH
Q 000599 1302 EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN-----QSADVRKTVVFC 1353 (1400)
Q Consensus 1302 ~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d-----~~seVRkaAv~~ 1353 (1400)
..++..|..++..+.....++.+..++++++-.+.....+ .+.+-|+.-...
T Consensus 77 ~~Ir~~A~~~~~e~~~~~~~~~i~~~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~f 133 (178)
T PF12717_consen 77 PEIRSLARSFFSELLKKRNPNIIYNNFPELISSLNNCYEHPVYGPLSREKRKKIYKF 133 (178)
T ss_pred HHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHhCccccccccccCHHHHHHHHHH
Confidence 8899999999999998878899999999998888887664 344444444443
No 76
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.86 E-value=0.26 Score=62.16 Aligned_cols=182 Identities=16% Similarity=0.247 Sum_probs=120.0
Q ss_pred CHHHHHHhcCC-CHHHHHHHHHHHHHHHHhhh-ccCChHhHHHHHHHHHhhhc-cCCcchHHHHHHHHHHHHHHhhhhhH
Q 000599 1 MEEALELARAK-DTKERMAGVERLHQLLEASR-KSLTSAEVTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHFK 77 (1400)
Q Consensus 1 ~e~~l~~l~s~-~Wk~R~~ale~L~~~l~~~~-~~~~~~~~~~lv~~l~~~l~-DsN~~V~~~aL~~l~~l~~~l~~~~~ 77 (1400)
|..++++|+.. |--..++|+.+|.+.+.-.. ..++...+..++-.|..+++ +.|+-++..|+.+|.++++.++.-..
T Consensus 169 ~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~a 248 (1051)
T KOG0168|consen 169 AKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSSA 248 (1051)
T ss_pred HHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchhh
Confidence 35678888876 88889999999988886543 33333345677777777777 57999999999999999999876554
Q ss_pred hhhh-hhHHHHHHHhCCCC-hhHHHHHHHHHHHHHHHhchh---------HHHHHHhhhhhhcCChhHHHHHHHHHHHHH
Q 000599 78 LHFN-ALVPAVVERLGDAK-QPVRDAARRLLLTLMEVSSPT---------IIVERAGSYAWTHRSWRVREEFARTVTSAI 146 (1400)
Q Consensus 78 ~~~~-~ilp~LleKLgD~K-~~vre~a~~~L~~l~e~~~p~---------~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l 146 (1400)
..+. ..+|.+++||-.-. --|-|.+.++|..+... -|. .++..+ . +|.-- ++.-.|.....+.
T Consensus 249 ~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~-H~~AiL~AG~l~a~Lsyl-D-FFSi~---aQR~AlaiaaN~C 322 (1051)
T KOG0168|consen 249 IVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRR-HPKAILQAGALSAVLSYL-D-FFSIH---AQRVALAIAANCC 322 (1051)
T ss_pred eeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhh-ccHHHHhcccHHHHHHHH-H-HHHHH---HHHHHHHHHHHHH
Confidence 4333 47899999985421 11444555555555432 111 122211 2 22211 2222344444455
Q ss_pred HhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 147 GLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 147 ~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
....+..+.+.-..+|.+..+|...+.++-+.+.-|+..+..
T Consensus 323 ksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d 364 (1051)
T KOG0168|consen 323 KSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIAD 364 (1051)
T ss_pred hcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHH
Confidence 555555555546789999999999999999999888887764
No 77
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=95.81 E-value=0.0073 Score=51.39 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=41.0
Q ss_pred hhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHH
Q 000599 132 WRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEM 186 (1400)
Q Consensus 132 pkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l 186 (1400)
|+||..++..|.......+...-++...++|.+..+|.|+++.||.+|..+|+.|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 7889988888865332222222233468999999999999999999999999764
No 78
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=95.78 E-value=0.07 Score=67.69 Aligned_cols=141 Identities=17% Similarity=0.257 Sum_probs=113.9
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1247 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~ 1247 (1400)
.++-+++...... ..++..-+..|.-.+..-.......+|+.++..|++.|.=++..+|-.++++|..++...+.-.
T Consensus 868 ivP~l~~~~~t~~---~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~ 944 (1030)
T KOG1967|consen 868 IVPILVSKFETAP---GSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQ 944 (1030)
T ss_pred hHHHHHHHhccCC---ccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccc
Confidence 3566666665332 3567777777777777444466667899999999999998889999999999999999888889
Q ss_pred cccHHHHHHHHHHHhcCCc---HHHHHHHHHHHHHHHhhcChh-------hHHHhhhhhccCCchhhHhHHHHH
Q 000599 1248 EDSVEIVIEKLLHVTKDAV---PKVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTCINC 1311 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~D~~---k~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~s~~~~~~~~alk~ 1311 (1400)
..|+..++|++|..-.|.. -.|+..|-.|+.++.+.+|+. .++..|.+.|.+++-.+|..|++.
T Consensus 945 t~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen 945 TEHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred hHHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHH
Confidence 9999999999999998776 678889999999999977763 477788888877777677777765
No 79
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.70 E-value=1.9 Score=49.46 Aligned_cols=195 Identities=18% Similarity=0.159 Sum_probs=123.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhc-cCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRK-SLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~-~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
+++=+.|.+.|+..|..|++-|...+...++ .+...++..+++.+...+.|. .+...++..+..++ ++.......+
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~--~~~~~~l~gl~~L~-~~~~~~~~~~ 78 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDH--ACVQPALKGLLALV-KMKNFSPESA 78 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccH--hhHHHHHHHHHHHH-hCcCCChhhH
Confidence 4556778999999999999999999988763 355677888999888778654 45555688888887 3333334556
Q ss_pred hhhHHHHHHHhC--CCChhHHHHHHHHHHHHHHHhc------hhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCc
Q 000599 81 NALVPAVVERLG--DAKQPVRDAARRLLLTLMEVSS------PTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1400)
Q Consensus 81 ~~ilp~LleKLg--D~K~~vre~a~~~L~~l~e~~~------p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~ 152 (1400)
..++..++++.. ..-..+|-.+-+.|..+++... .+..+..++...-+-|.||-..-+..++...+..|...
T Consensus 79 ~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~~ 158 (262)
T PF14500_consen 79 VKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDIS 158 (262)
T ss_pred HHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccc
Confidence 666667766543 3444577777777777776421 12333444444455677775555444443333322210
Q ss_pred c--------------------------h-----------------hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 153 E--------------------------L-----------------TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 153 ~--------------------------l-----------------~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
. + .+.+..+|.+..-|..+.+.|+..+.++|......
T Consensus 159 ~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~tL~~c~~~ 238 (262)
T PF14500_consen 159 EFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQTLKACIEN 238 (262)
T ss_pred hhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHH
Confidence 0 0 01134667777777777777888888888777776
Q ss_pred hChh-HHHhhh
Q 000599 190 AGPQ-FRDELH 199 (1400)
Q Consensus 190 ~G~~-l~~~L~ 199 (1400)
.|.. +.+++.
T Consensus 239 y~~~~~~~~~~ 249 (262)
T PF14500_consen 239 YGADSLSPHWS 249 (262)
T ss_pred CCHHHHHHHHH
Confidence 6644 444444
No 80
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=95.68 E-value=0.12 Score=53.11 Aligned_cols=111 Identities=19% Similarity=0.296 Sum_probs=81.3
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--H
Q 000599 781 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--R 858 (1400)
Q Consensus 781 ~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ 858 (1400)
.....||.- +..+=..+.+.+.+ -...++.+.++|...|.+|+..+|..|-.++..+|..|+..+. .
T Consensus 13 ~l~~~dw~~----ileicD~In~~~~~-------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~ 81 (139)
T cd03567 13 SNREEDWEA----IQAFCEQINKEPEG-------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFR 81 (139)
T ss_pred cCCCCCHHH----HHHHHHHHHcCCcc-------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHH
Confidence 345677754 44455556554442 2356788999999999999999999999999999999976664 4
Q ss_pred HHHHHHHhhC------CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhh
Q 000599 859 ILPHVFSRLI------DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 902 (1400)
Q Consensus 859 ll~~L~~klg------D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l 902 (1400)
++..|++.+. .....|+.++.+++..|.+.|+.+-.+...+..|
T Consensus 82 Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~~~p~~~~~Y~~L 131 (139)
T cd03567 82 FLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELPHEPKIKEAYDML 131 (139)
T ss_pred HHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhcccchHHHHHHHH
Confidence 5555555552 2467899999999999999997555555555444
No 81
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=95.65 E-value=5 Score=57.01 Aligned_cols=320 Identities=13% Similarity=0.096 Sum_probs=180.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChH--hHH-HHHHHHHhhh-ccCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSA--EVT-SLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGEHFKLH 79 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~--~~~-~lv~~l~~~l-~DsN~~V~~~aL~~l~~l~~~l~~~~~~~ 79 (1400)
|++.-.+.+-..++-|++.|.++....-..-+.. .++ +|++-+.-.+ +..+..|.+..++|+..++...+..+++-
T Consensus 1142 f~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~~nIkSG 1221 (1780)
T PLN03076 1142 FVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRVNNVKSG 1221 (1780)
T ss_pred HHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhcC
Confidence 3443356677789999998887765432111111 111 3444443323 35677899999999999998777777765
Q ss_pred hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH-hc---------hhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhc
Q 000599 80 FNALVPAVVERLGDAKQPVRDAARRLLLTLMEV-SS---------PTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1400)
Q Consensus 80 ~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~-~~---------p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~f 149 (1400)
-..|+-.+---..+..+.+.+.|-+++..++.. .+ ...+++.+..++-+.++..+=..++..|..+...+
T Consensus 1222 WktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~~~~~~L 1301 (1780)
T PLN03076 1222 WKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLRFCATKL 1301 (1780)
T ss_pred cHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHHHHHHHH
Confidence 555555554445677888889999998887752 11 12455566665544445666555555555332221
Q ss_pred -----cC------------------------c----chhhhhhhHHHH---HHhhCCCChhHHHHHHHHHHHHHhhhChh
Q 000599 150 -----SA------------------------T----ELTLQRAILPPI---LQMLNDPNPGVREAAILCIEEMYTYAGPQ 193 (1400)
Q Consensus 150 -----g~------------------------~----~l~l~k~~lp~l---~~~L~d~n~~VR~aA~~~l~~l~~~~G~~ 193 (1400)
+. . .-....-++|.+ ..+..|...+||+.|.++|-.+....|..
T Consensus 1302 a~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~ 1381 (1780)
T PLN03076 1302 AEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHL 1381 (1780)
T ss_pred HhccccccccccccccccccccccccccccccccccchhHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhcc
Confidence 00 0 000012355554 45577999999999999999999988876
Q ss_pred HHHhh-hcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCC
Q 000599 194 FRDEL-HRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIE 272 (1400)
Q Consensus 194 l~~~L-~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~ 272 (1400)
|...+ . .+ --+.|.--|+.++....+.. .. .. . +.
T Consensus 1382 Fs~~~W~--~i---f~~VLFPIFd~l~~~~~~~~-----~~-------------~~--------~----~~--------- 1417 (1780)
T PLN03076 1382 FSLPLWE--RV---FESVLFPIFDYVRHAIDPSG-----GD-------------EP--------E----GQ--------- 1417 (1780)
T ss_pred CCHHHHH--HH---HHHHHHHHHHHHHHhhcccc-----cc-------------cc--------c----cc---------
Confidence 54322 1 00 01123333443321110000 00 00 0 00
Q ss_pred CcccCChHHHHHHHHHHhhhcCCCCCHH--HHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHH
Q 000599 273 PIKVYSEKELIREFEKIGSTLVPDKDWS--VRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQAC 350 (1400)
Q Consensus 273 ~v~i~s~~dl~~~l~ki~~~l~~~~dW~--~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac 350 (1400)
++.. +..+ .....|- .=..||+.+-.+.. .-|+.+-..|..+..-|..++...|-++++.++
T Consensus 1418 ~~~~-~~~~------------~e~~~Wl~eT~~~AL~~lvdLft---~fFd~L~~~L~~~l~ll~~ci~q~n~~la~ig~ 1481 (1780)
T PLN03076 1418 GVDG-DQGE------------LDQDAWLYETCTLALQLVVDLFV---KFYPTVNPLLKKVLMLLVSFIKRPHQSLAGIGI 1481 (1780)
T ss_pred cccc-cccc------------hhhhhHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHH
Confidence 0000 0000 0125584 34444444444432 122333335566666677788889999999999
Q ss_pred HHHHHHHHHhhhhHHH-HHHHHHHHHHHHhchhh
Q 000599 351 HLLCFLSKELLGDFEA-CAEMFIPVLFKLVVITV 383 (1400)
Q Consensus 351 ~~l~~La~~Lg~~f~~-~a~~~lp~Ll~~~~~~k 383 (1400)
.|+..|....|..|.. +-+.++..+.+.+..+.
T Consensus 1482 ~~l~~li~~ng~~F~~~~W~~i~~~~~~lf~~T~ 1515 (1780)
T PLN03076 1482 AAFVRLMSNAGHLFSDEKWLEVVLSLKEAANATL 1515 (1780)
T ss_pred HHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHhC
Confidence 9999999999999965 45556666665555443
No 82
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.60 E-value=0.81 Score=55.34 Aligned_cols=198 Identities=18% Similarity=0.327 Sum_probs=133.3
Q ss_pred hHHHHHHHHHHHHHhcCC----hhhHHHHHHHHHHHHHHHhcC-------CChHHHHHHHHHHHHHHhhcc--ccc-ccc
Q 000599 1185 TSKHGALQQLIKASVAND----HSIWTKYFNQILTAVLEVLDD-------ADSSVREVALSLINEMLKNQK--DVM-EDS 1250 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~----~~~~~~~f~~ll~~Ll~~l~d-------~~~~vR~~aL~~L~~l~~~~~--~~~-~~~ 1250 (1400)
..|.+|...|...++..+ .....+++..++..+.+=+.. .+..+...||++|..++.+.. ..+ +++
T Consensus 8 ~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~~l~~d~ 87 (372)
T PF12231_consen 8 SSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVSTLSDDF 87 (372)
T ss_pred HHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHhhCChHH
Confidence 689999999999988764 233455666666555543322 244567789999998886642 223 344
Q ss_pred HHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhh---ccCCchhhHhHHHHHHHHHHh
Q 000599 1251 VEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPL---LVTEDEKTLVTCINCLTKLVG 1317 (1400)
Q Consensus 1251 ~e~~l~~ll~~~~D--~~k~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~---l~s~~~~~~~~alk~l~~lv~ 1317 (1400)
..-++-..++.+.| ..|.|...+..|+.. ..++|. +++.++..+ +.+.. +-...+..+.+++.
T Consensus 88 ~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~--Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~s--i~~erL~i~~~ll~ 163 (372)
T PF12231_consen 88 ASFIIDHSIESLQNPNSPKSICTHYLWCLSD--QKFSPKIMTSDRVERLLAALHNIKNRFPSKS--IISERLNIYKRLLS 163 (372)
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHc--CCCCCcccchhhHHHHHHHHHHhhccCCchh--HHHHHHHHHHHHHH
Confidence 44567777777644 468888888888863 556662 233332222 22222 34556777779997
Q ss_pred hcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hcch----hhhhhcHHHHHHHHHHHHhhh
Q 000599 1318 RLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AFLP----YLERLNSTQLRLVTIYANRIS 1388 (1400)
Q Consensus 1318 ~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge--~~~p----~l~~L~~s~~kll~~yi~r~~ 1388 (1400)
+.+ +.+..+...-+|.|...+-+....+|-.|..++..+-.++|. .+-. .+..-.... ++++.|.+|+.
T Consensus 164 q~p-~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~-~~~~~~~~~L~ 238 (372)
T PF12231_consen 164 QFP-QQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG-KLIQLYCERLK 238 (372)
T ss_pred HHH-HHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc-cHHHHHHHHHH
Confidence 777 778888888999999999999999999999999999999984 2323 222222333 88999988854
No 83
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.53 E-value=0.093 Score=56.26 Aligned_cols=133 Identities=21% Similarity=0.313 Sum_probs=101.8
Q ss_pred HHHHHHHHHHHHHhhcc-ccccccHHHHHHHH-----------HH-HhcCCcHHHHHHHHHHHHHHHhhcChh-------
Q 000599 1228 VREVALSLINEMLKNQK-DVMEDSVEIVIEKL-----------LH-VTKDAVPKVSNEAEHCLTVVLSQYDPF------- 1287 (1400)
Q Consensus 1228 vR~~aL~~L~~l~~~~~-~~~~~~~e~~l~~l-----------l~-~~~D~~k~V~~aA~~al~~i~~~~~p~------- 1287 (1400)
||..||..|+.|++... ..|..|--.++|.. +. ...|+...|+.+|..++.+|+....+.
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~ 81 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAEES 81 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHHhc
Confidence 79999999999999954 44777777777766 33 446999999999999999888554331
Q ss_pred -------------------hHHHhhhhhccC-CchhhHhHHHHHHHHHHhhcCHHHHHh-hhhhhHHHHHHHhcCCCHHH
Q 000599 1288 -------------------RCLSVIVPLLVT-EDEKTLVTCINCLTKLVGRLSQEELMA-QLPSFLPALFEAFGNQSADV 1346 (1400)
Q Consensus 1288 -------------------~~l~~l~~~l~s-~~~~~~~~alk~l~~lv~~~~~~~l~~-~l~~liP~l~~~~~d~~seV 1346 (1400)
.+-..|.-.|.. ++.++...++|++..|++.-+-+.|.. .++.++..+..-+.+.|++|
T Consensus 82 ~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v 161 (182)
T PF13251_consen 82 KGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNV 161 (182)
T ss_pred CCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcH
Confidence 122223333433 356678889999999998888777754 67888999999999999999
Q ss_pred HHHHHHHHHHHHHH
Q 000599 1347 RKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1347 RkaAv~~lv~~~~~ 1360 (1400)
|-++..||-.+-.+
T Consensus 162 ~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 162 RVAALSCLGALLSV 175 (182)
T ss_pred HHHHHHHHHHHHcC
Confidence 99999998776643
No 84
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=95.53 E-value=0.25 Score=63.31 Aligned_cols=168 Identities=14% Similarity=0.121 Sum_probs=101.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHH
Q 000599 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAV 87 (1400)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~L 87 (1400)
+.+++-+.|.+|+..+...+..+.. +..++--+.+.+...|..+-...---|..+++. --..+-..++.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~d------mssLf~dViK~~~trd~ElKrL~ylYl~~yak~----~P~~~lLavNti 97 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGED------MSSLFPDVIKNVATRDVELKRLLYLYLERYAKL----KPELALLAVNTI 97 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCCC------hHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcc----CHHHHHHHHHHH
Confidence 5667788888888888777765322 333333333333344444433333333333322 123455667777
Q ss_pred HHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhh-hHHHHHH
Q 000599 88 VERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRA-ILPPILQ 166 (1400)
Q Consensus 88 leKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~-~lp~l~~ 166 (1400)
..-|+|.++-+|-.|..+|..+=...=...++..+.+ .++|+++.||..++.++.... ....--+... .+..+..
T Consensus 98 ~kDl~d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~-~l~d~~ayVRk~Aalav~kly---~ld~~l~~~~g~~~~l~~ 173 (757)
T COG5096 98 QKDLQDPNEEIRGFALRTLSLLRVKELLGNIIDPIKK-LLTDPHAYVRKTAALAVAKLY---RLDKDLYHELGLIDILKE 173 (757)
T ss_pred HhhccCCCHHHHHHHHHHHHhcChHHHHHHHHHHHHH-HccCCcHHHHHHHHHHHHHHH---hcCHhhhhcccHHHHHHH
Confidence 7778888888888888887776443223345555554 788888888888877776543 2221111122 4555667
Q ss_pred hhCCCChhHHHHHHHHHHHHHhh
Q 000599 167 MLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 167 ~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
++.|++|.|-..|...|.+++.-
T Consensus 174 l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 174 LVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HhhCCCchHHHHHHHHHHHhchh
Confidence 77888888888888888888755
No 85
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.45 E-value=0.3 Score=50.52 Aligned_cols=108 Identities=16% Similarity=0.162 Sum_probs=80.2
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhh
Q 000599 284 REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD 363 (1400)
Q Consensus 284 ~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~ 363 (1400)
+.+++.+.....+.||..-++- ..++... ... -++.+.+|++++...|..|+..|+.++..+.+.+|..
T Consensus 3 ~~iekATse~l~~~dw~~il~i----cD~I~~~-~~~------~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~ 71 (144)
T cd03568 3 DLVEKATDEKLTSENWGLILDV----CDKVKSD-ENG------AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKR 71 (144)
T ss_pred HHHHHHcCccCCCcCHHHHHHH----HHHHhcC-Ccc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH
Confidence 4466777766778999754444 4444332 122 3578889999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHhCC
Q 000599 364 FEACA--EMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 364 f~~~a--~~~lp~Ll~~~~~-~kkvi~~sa~~al~~i~~~~~ 402 (1400)
|...+ +.|+..|.+++.. ....|++-....|..|.....
T Consensus 72 fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~ 113 (144)
T cd03568 72 FHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEFK 113 (144)
T ss_pred HHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhC
Confidence 98754 5588888888776 566677777777777776543
No 86
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.39 E-value=3 Score=52.49 Aligned_cols=93 Identities=12% Similarity=0.135 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchH-------HHHHHHHHHHHHHHHhhhhHHHH
Q 000599 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSS-------IVKQACHLLCFLSKELLGDFEAC 367 (1400)
Q Consensus 295 ~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~-------Vv~~Ac~~l~~La~~Lg~~f~~~ 367 (1400)
...|.+.|.++|.-...|+... + +.+++.-|++.+.+.+.. --+.-.++|...| -.|-.+
T Consensus 327 ss~dldvr~Ktldi~ldLvssr-----N----vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~ca----v~Fp~~ 393 (948)
T KOG1058|consen 327 SSPDLDVRSKTLDIALDLVSSR-----N----VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACA----VKFPEV 393 (948)
T ss_pred CcccccHHHHHHHHHHhhhhhc-----c----HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHHh----hcChHH
Confidence 6789999999999988888642 2 224555555555433332 1111122333222 578899
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHh
Q 000599 368 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRN 400 (1400)
Q Consensus 368 a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~ 400 (1400)
+..++|.|++-+++.+...+.....-++..++.
T Consensus 394 aatvV~~ll~fisD~N~~aas~vl~FvrE~iek 426 (948)
T KOG1058|consen 394 AATVVSLLLDFISDSNEAAASDVLMFVREAIEK 426 (948)
T ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHh
Confidence 999999999999999987777666666655543
No 87
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=95.27 E-value=0.18 Score=52.17 Aligned_cols=107 Identities=14% Similarity=0.211 Sum_probs=79.5
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--H
Q 000599 781 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--R 858 (1400)
Q Consensus 781 ~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ 858 (1400)
.....||. ....+-..+.+... .-...++.+.++|...|.+|...+|..|..++..+|..|+..+. .
T Consensus 12 ~l~~~dw~----~il~icD~I~~~~~-------~~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~ 80 (144)
T cd03568 12 KLTSENWG----LILDVCDKVKSDEN-------GAKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRD 80 (144)
T ss_pred cCCCcCHH----HHHHHHHHHhcCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHH
Confidence 34577884 44455566655433 23467888999999999999999999999999999999976553 4
Q ss_pred HHHHHHHhhCC-chhhhHHHHHHHHHHHhccCCchhhHHHH
Q 000599 859 ILPHVFSRLID-PKELVRQPCSTTLDIVSKTYSVDSLLPAL 898 (1400)
Q Consensus 859 ll~~L~~klgD-~k~~vr~~~~~~L~~~~~~~~~~~~l~~l 898 (1400)
++..|.+-+.+ ....|+.++.+++..|.+.|+.+-.++.+
T Consensus 81 Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~i 121 (144)
T cd03568 81 FTQELKKLINDRVHPTVKEKLREVVKQWADEFKNDPSLSLM 121 (144)
T ss_pred HHHHHHHHhcccCCHHHHHHHHHHHHHHHHHhCCCcccHHH
Confidence 55554444444 67789999999999999999766554333
No 88
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=95.23 E-value=0.4 Score=55.84 Aligned_cols=176 Identities=13% Similarity=0.075 Sum_probs=136.1
Q ss_pred HHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCC
Q 000599 15 ERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDA 94 (1400)
Q Consensus 15 ~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~ 94 (1400)
+-..|+|--..+++..+..--..++.-+.-.+.+.+.-+-.+|--.-|+++....-.++..+.++...++.+++-=+-|.
T Consensus 71 VH~KaLevY~~IF~~ig~~~L~~dl~i~~~GLfpl~~~asi~Vkp~lL~i~e~~~lpL~~~L~p~l~~li~slLpGLede 150 (307)
T PF04118_consen 71 VHQKALEVYEYIFERIGPDGLAQDLPIYSPGLFPLFSYASIQVKPQLLDIYEKYYLPLGPALRPCLKGLILSLLPGLEDE 150 (307)
T ss_pred HHHHHHHHHHHHHHhcCHHHHHhhcHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHhccccccC
Confidence 33455666666665544221134556666677888888888999999999999887888888899999999999888877
Q ss_pred ChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhcc------C-----cch--hhhhhhH
Q 000599 95 KQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFS------A-----TEL--TLQRAIL 161 (1400)
Q Consensus 95 K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg------~-----~~l--~l~k~~l 161 (1400)
...+-+.+.++|..+.+.++....+..+-. ++ -.+|.+|.+++.|+..-+..+. . ..+ +. ..++
T Consensus 151 ~sE~~~~~~~ll~~l~~~v~~~~F~~~lwl-~i-i~sp~~Rl~al~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~-~Llv 227 (307)
T PF04118_consen 151 GSEFFDRTLKLLDKLKEAVGDKYFWQCLWL-CI-ITSPSRRLGALNYLLRRLPKFQNDELSLSSEEQEYCLGPDP-GLLV 227 (307)
T ss_pred CchHHHHHHHHHHHHHHhcChhHHHHHHHH-HH-hcCcchhHHHHHHHHHhCCcccccccccchHHHHHhcCCCc-cHHH
Confidence 777999999999999999888877777754 22 2689999999999998777666 1 011 12 4588
Q ss_pred HHHHHhhCCCChhHHHHHHHHHHHHHhhhChh
Q 000599 162 PPILQMLNDPNPGVREAAILCIEEMYTYAGPQ 193 (1400)
Q Consensus 162 p~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~ 193 (1400)
..++.+|+|.|.-|+-.+..+|..-+......
T Consensus 228 ~al~~~L~D~~iLVqR~~LDlLl~~~PL~s~~ 259 (307)
T PF04118_consen 228 RALCACLEDENILVQRGFLDLLLSHFPLDSPV 259 (307)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHhCCCCCcc
Confidence 89999999999999999999999988765543
No 89
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=95.19 E-value=0.14 Score=52.81 Aligned_cols=107 Identities=18% Similarity=0.311 Sum_probs=76.7
Q ss_pred CCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHH--HH
Q 000599 781 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYM--ER 858 (1400)
Q Consensus 781 ~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l--~~ 858 (1400)
...+.|| +++..+-+.+.+... ..+..++.|.++|..+|.+|...+|..|..++..+|..|+..+ ..
T Consensus 17 ~~~~~Dw----~~~l~icD~i~~~~~-------~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~ 85 (140)
T PF00790_consen 17 SLPSPDW----SLILEICDLINSSPD-------GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKE 85 (140)
T ss_dssp TSSS--H----HHHHHHHHHHHTSTT-------HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHH
T ss_pred CCCCCCH----HHHHHHHHHHHcCCc-------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHH
Confidence 3456677 455667777877643 3456788899999999999999999999999999999997665 33
Q ss_pred HHHHHHHhhC--Cchh--hhHHHHHHHHHHHhccCCchhhHHHH
Q 000599 859 ILPHVFSRLI--DPKE--LVRQPCSTTLDIVSKTYSVDSLLPAL 898 (1400)
Q Consensus 859 ll~~L~~klg--D~k~--~vr~~~~~~L~~~~~~~~~~~~l~~l 898 (1400)
++..|.+-+. ...+ .||+++.++|..|.+.|..+--+..+
T Consensus 86 fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~~i 129 (140)
T PF00790_consen 86 FLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELSLI 129 (140)
T ss_dssp HHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGHHH
T ss_pred HHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCchHH
Confidence 4444444332 2222 29999999999999999555544433
No 90
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.19 E-value=0.6 Score=58.11 Aligned_cols=177 Identities=17% Similarity=0.243 Sum_probs=117.6
Q ss_pred CCCHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 000599 1166 GPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 1245 (1400)
Q Consensus 1166 ~~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~ 1245 (1400)
+|.-++++..|+... +-.|+.|...|.++-. ..++.+..+|. -|.+-|.|++++|..+|..++=++++..+-
T Consensus 143 RDLa~Dv~tLL~ssk---pYvRKkAIl~lykvFL-kYPeAlr~~Fp----rL~EkLeDpDp~V~SAAV~VICELArKnPk 214 (877)
T KOG1059|consen 143 RDLADDVFTLLNSSK---PYVRKKAILLLYKVFL-KYPEALRPCFP----RLVEKLEDPDPSVVSAAVSVICELARKNPQ 214 (877)
T ss_pred HHHHHHHHHHHhcCc---hHHHHHHHHHHHHHHH-hhhHhHhhhHH----HHHHhccCCCchHHHHHHHHHHHHHhhCCc
Confidence 455677887776654 5789889888877644 24566666777 788999999999999999999999998765
Q ss_pred cccccHHH------------HHHHHHHHhcC-----C--cHHHH---------HHH----HHHHHHHHhh-c---Ch---
Q 000599 1246 VMEDSVEI------------VIEKLLHVTKD-----A--VPKVS---------NEA----EHCLTVVLSQ-Y---DP--- 1286 (1400)
Q Consensus 1246 ~~~~~~e~------------~l~~ll~~~~D-----~--~k~V~---------~aA----~~al~~i~~~-~---~p--- 1286 (1400)
.+-+++.. +|.+||.+++. | +|.+. +.| -+|+++++.. + .|
T Consensus 215 nyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~ 294 (877)
T KOG1059|consen 215 NYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHS 294 (877)
T ss_pred ccccccHHHHHHHhccCCCeehHHHHHHHhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcH
Confidence 43322211 23444444442 1 11111 122 3577777755 1 11
Q ss_pred ---hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000599 1287 ---FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1355 (1400)
Q Consensus 1287 ---~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv 1355 (1400)
..|+.-|--+|.+.+--.+..+|-.+.++...++ ..+..| -..|.+|++|.|..+|--|..-+-
T Consensus 295 asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp-~~Vqa~----kdlIlrcL~DkD~SIRlrALdLl~ 361 (877)
T KOG1059|consen 295 ASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHP-KAVQAH----KDLILRCLDDKDESIRLRALDLLY 361 (877)
T ss_pred HHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCH-HHHHHh----HHHHHHHhccCCchhHHHHHHHHH
Confidence 1366666667765544446666777788886666 667777 445699999999999999987743
No 91
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=95.13 E-value=10 Score=45.87 Aligned_cols=300 Identities=17% Similarity=0.161 Sum_probs=169.2
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhccCChHhH----HHHHHHHHhhhcc-------CCcchHHHHHHHHHHHHHH--hh
Q 000599 7 LARAKDTKERMAGVERLHQLLEASRKSLTSAEV----TSLVDCCLDLLKD-------NNFKVSQGALQSLASAAVL--SG 73 (1400)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~----~~lv~~l~~~l~D-------sN~~V~~~aL~~l~~l~~~--l~ 73 (1400)
+|...+=-.|.+||..|...++......+...+ ..++..+..-+.. .+..+..+||.+++.++-. +-
T Consensus 1 qla~~~~~~r~daY~~l~~~l~~~~~~~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~ 80 (372)
T PF12231_consen 1 QLAGSDRSSRLDAYMTLNNALKAYDNLPDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIV 80 (372)
T ss_pred CCCcCCcHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHH
Confidence 356677789999999999999887654443333 3344444332222 3667889999999987622 22
Q ss_pred hhhH-hhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHH-Hhchh----HHHHHHhhh--hhh--cCChhHHHHHHHHHH
Q 000599 74 EHFK-LHFNALVPAVVERLGDAKQPVRDAARRLLLTLME-VSSPT----IIVERAGSY--AWT--HRSWRVREEFARTVT 143 (1400)
Q Consensus 74 ~~~~-~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e-~~~p~----~V~e~l~~~--~~~--~Knpkvr~~~l~~L~ 143 (1400)
..+. .....++...++.+.+.+. -+..+...|.-+.. .+++. ...+.++.. ..+ -+.--+-.|.+..+.
T Consensus 81 ~~l~~d~~~~~i~~~i~~l~~~~~-~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~~ 159 (372)
T PF12231_consen 81 STLSDDFASFIIDHSIESLQNPNS-PKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIYK 159 (372)
T ss_pred hhCChHHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHHH
Confidence 2222 2233477888888866553 24455555555554 23332 223333321 122 233446677788888
Q ss_pred HHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChh------HHHhhhcCCCChhhHHHHHHHHHh
Q 000599 144 SAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ------FRDELHRHNLPNSMVKDINARLER 217 (1400)
Q Consensus 144 ~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~------l~~~L~~~~l~~~~l~~i~~~~~~ 217 (1400)
..+..|...-..-...++|.+...+-+....||..|..++.++-..+|+. +...+..........+.+..++.+
T Consensus 160 ~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~L~~ 239 (372)
T PF12231_consen 160 RLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENGKLIQLYCERLKE 239 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccccHHHHHHHHHHH
Confidence 88887765433222568999999999999999999999999999888853 223333222222445555566655
Q ss_pred hCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCC
Q 000599 218 IQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDK 297 (1400)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~ 297 (1400)
.-.... . +. -++.-.+.- ....|. ......+.....=++.+..-.+.
T Consensus 240 mi~~~~--~-----~~-------------~a~~iW~~~--i~LL~~-----------~~~~~w~~~n~wL~v~e~cFn~~ 286 (372)
T PF12231_consen 240 MIKSKD--E-----YK-------------LAMQIWSVV--ILLLGS-----------SRLDSWEHLNEWLKVPEKCFNSS 286 (372)
T ss_pred HHhCcC--C-----cc-------------hHHHHHHHH--HHHhCC-----------chhhccHhHhHHHHHHHHHhcCC
Confidence 422210 0 00 000000000 000000 00111222233333444222557
Q ss_pred CHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcc
Q 000599 298 DWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSD 340 (1400)
Q Consensus 298 dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~D 340 (1400)
|=..|.+|+..-+.++..-..+....-..++-|..+|..+++.
T Consensus 287 d~~~k~~A~~aW~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~ 329 (372)
T PF12231_consen 287 DPQVKIQAFKAWRRLIYASNPNELTSPKRLKLLCQPLSSQLRR 329 (372)
T ss_pred CHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHHHHHHHhCc
Confidence 8899999999999998743223223335577788888777653
No 92
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=95.13 E-value=0.47 Score=58.90 Aligned_cols=178 Identities=18% Similarity=0.166 Sum_probs=110.9
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-h
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-T 1262 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~-~ 1262 (1400)
-..|...++-|+.++.+.. ..-+..|+.+...++..+.|+.+.||..|+-+|..+= +..-++-.+ +...+... -
T Consensus 99 k~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ---~d~~dee~~-v~n~l~~liq 173 (892)
T KOG2025|consen 99 KKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQ---GDPKDEECP-VVNLLKDLIQ 173 (892)
T ss_pred hhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHh---cCCCCCccc-HHHHHHHHHh
Confidence 3689999988888777443 3333569999999999999999999998877776554 333332211 22222333 3
Q ss_pred cCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000599 1263 KDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1263 ~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~ 1342 (1400)
.||..+|+++|..++. +-...+|.|..-.++-+...|..+..-+-.=+ +.-...+. ..+--+..|+.|+
T Consensus 174 nDpS~EVRRaaLsnI~------vdnsTlp~IveRarDV~~anRrlvY~r~lpki-d~r~lsi~----krv~LlewgLnDR 242 (892)
T KOG2025|consen 174 NDPSDEVRRAALSNIS------VDNSTLPCIVERARDVSGANRRLVYERCLPKI-DLRSLSID----KRVLLLEWGLNDR 242 (892)
T ss_pred cCCcHHHHHHHHHhhc------cCcccchhHHHHhhhhhHHHHHHHHHHhhhhh-hhhhhhHH----HHHHHHHHhhhhh
Confidence 5899999999988764 22234455554444444554444443111111 11112222 2344567788888
Q ss_pred CHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHHH
Q 000599 1343 SADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQL 1377 (1400)
Q Consensus 1343 ~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~~ 1377 (1400)
+=+|++|++..+..=|.-+.+ .+.-.|..|..+--
T Consensus 243 e~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsns 278 (892)
T KOG2025|consen 243 EFSVKGALVDAILSGWLRFSDGNILELLERLDVSNS 278 (892)
T ss_pred hhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccc
Confidence 888888888888887777776 66666776665543
No 93
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=95.08 E-value=0.55 Score=50.47 Aligned_cols=157 Identities=18% Similarity=0.180 Sum_probs=100.7
Q ss_pred HHHHHHHHHHHHHHHhhhccCChHhHHHHH-H-----------HHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 14 KERMAGVERLHQLLEASRKSLTSAEVTSLV-D-----------CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 14 k~R~~ale~L~~~l~~~~~~~~~~~~~~lv-~-----------~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
|.|..|+..|..+++..++..-..-+..|+ + .+...+.|.+.+|...|+.++..+.++.+.++...-
T Consensus 1 kvR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae- 79 (182)
T PF13251_consen 1 KVRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCILKDPSPKVRAAAASALAALLEGSKPFLAQAE- 79 (182)
T ss_pred ChhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHHcCCchhHHHHHHHHHHHHHHccHHHHHHHH-
Confidence 679999999999998843332122233322 1 233578899999999999999999988655544321
Q ss_pred hhHHHHHHHhCCCC-hh--HHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchh--h
Q 000599 82 ALVPAVVERLGDAK-QP--VRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT--L 156 (1400)
Q Consensus 82 ~ilp~LleKLgD~K-~~--vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~--l 156 (1400)
-...+. .. .-......+..+. ..|+...-..+++.+..+++.++...+.......++ +
T Consensus 80 --------~~~~~~~sFtslS~tLa~~i~~lH---------~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~l 142 (182)
T PF13251_consen 80 --------ESKGPSGSFTSLSSTLASMIMELH---------RGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGL 142 (182)
T ss_pred --------hcCCCCCCcccHHHHHHHHHHHHH---------HHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhH
Confidence 111111 11 1111122222222 223322234557778888999998888765544332 4
Q ss_pred hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 157 ~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
...++..+..++.+.|.+||.++..+++.+..
T Consensus 143 l~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 143 LTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 47888999999999999999999999988764
No 94
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.06 E-value=1.8 Score=53.66 Aligned_cols=279 Identities=17% Similarity=0.112 Sum_probs=158.1
Q ss_pred hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHH
Q 000599 116 TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFR 195 (1400)
Q Consensus 116 ~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~ 195 (1400)
..++..+.. ......++||...+..|...-+ |.+ +.+.+....++++.|.+.+||.+|.+++..+-+.......
T Consensus 197 ~~~~~~l~~-~~~~~D~~Vrt~A~eglL~L~e--g~k---L~~~~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e 270 (823)
T KOG2259|consen 197 EHAARGLIY-LEHDQDFRVRTHAVEGLLALSE--GFK---LSKACYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLE 270 (823)
T ss_pred HHHHHHHHH-HhcCCCcchHHHHHHHHHhhcc--ccc---ccHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCccc
Confidence 355665654 7888899999999888865433 443 3467888999999999999999999998877665532222
Q ss_pred HhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcc
Q 000599 196 DELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIK 275 (1400)
Q Consensus 196 ~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~ 275 (1400)
.+-. ..+.+.+.|.++=.... +.+- . .| +..++ ..|+. ..
T Consensus 271 ~e~~-------e~kl~D~aF~~vC~~v~--D~sl------~--------VR-V~AaK-------~lG~~-------~~-- 310 (823)
T KOG2259|consen 271 RESE-------EEKLKDAAFSSVCRAVR--DRSL------S--------VR-VEAAK-------ALGEF-------EQ-- 310 (823)
T ss_pred chhh-------hhhhHHHHHHHHHHHHh--cCce------e--------ee-ehHHH-------HhchH-------HH--
Confidence 2222 12333344443310000 1000 0 00 00000 11210 00
Q ss_pred cCChHHHHHHHH-HHhhhcCCCCCHHHHHHHHHHHH-------------------------HHHhcCCCCchhHHHhHHH
Q 000599 276 VYSEKELIREFE-KIGSTLVPDKDWSVRIAAMQRVE-------------------------GLVLGGAADHPCFRGLLKQ 329 (1400)
Q Consensus 276 i~s~~dl~~~l~-ki~~~l~~~~dW~~R~~AL~~l~-------------------------~ll~~~~~~~~~f~~~L~~ 329 (1400)
+ |+.=++..++ |+... .--|+.--+.-+.+. .|+..|+
T Consensus 311 v-See~i~QTLdKKlms~---lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGA------------ 374 (823)
T KOG2259|consen 311 V-SEEIIQQTLDKKLMSR---LRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGA------------ 374 (823)
T ss_pred h-HHHHHHHHHHHHHhhh---hhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccc------------
Confidence 0 1111222222 12211 112222111111111 1121111
Q ss_pred HHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCc-chHH
Q 000599 330 LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAV-RVLP 408 (1400)
Q Consensus 330 L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~-rll~ 408 (1400)
+.+|...+.|-=--|-+.|...+..||..- +. |+...+--|...+.|--.++|-.+..+++.|..|.... ..++
T Consensus 375 -CGA~VhGlEDEf~EVR~AAV~Sl~~La~ss-P~---FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~i~eeql~ 449 (823)
T KOG2259|consen 375 -CGALVHGLEDEFYEVRRAAVASLCSLATSS-PG---FAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLAIREEQLR 449 (823)
T ss_pred -cceeeeechHHHHHHHHHHHHHHHHHHcCC-CC---cHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHheecHHHHH
Confidence 223333334433334455566666666432 34 45566667788888999999999999999999998774 7899
Q ss_pred HHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 409 RIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 409 ~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
.|.+.+ .+.++.+|...-+.|..+ ++.+...+...++.+.+.+.+-=+|.|.-
T Consensus 450 ~il~~L-~D~s~dvRe~l~elL~~~--~~~d~~~i~m~v~~lL~~L~kyPqDrd~i 502 (823)
T KOG2259|consen 450 QILESL-EDRSVDVREALRELLKNA--RVSDLECIDMCVAHLLKNLGKYPQDRDEI 502 (823)
T ss_pred HHHHHH-HhcCHHHHHHHHHHHHhc--CCCcHHHHHHHHHHHHHHhhhCCCCcHHH
Confidence 999999 688999999988887654 45543344555666666666666777654
No 95
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=94.88 E-value=0.45 Score=57.49 Aligned_cols=65 Identities=31% Similarity=0.385 Sum_probs=44.1
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcch-----hhhhhcHHHHHHHHHHHHhhhhcccCcccCCCC
Q 000599 1330 SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLP-----YLERLNSTQLRLVTIYANRISQARTGTTIDASQ 1400 (1400)
Q Consensus 1330 ~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p-----~l~~L~~s~~kll~~yi~r~~~~~~~~~~~~~~ 1400 (1400)
.+.-.+.+|++|.|-|||..|-|.+-.+. ..+++.| +|+.+.+-..+|+ .|| +....++.-|-||
T Consensus 526 sv~~~lkRclnD~DdeVRdrAsf~l~~~~--~~da~~pl~~sd~~~dipsle~~l~-~yI---se~sf~t~fdvnq 595 (898)
T COG5240 526 SVENALKRCLNDQDDEVRDRASFLLRNMR--LSDACEPLFSSDELGDIPSLELELI-GYI---SEDSFATAFDVNQ 595 (898)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhhh--hhhhhhccccccccCCcchhHHhhh-eee---ccccccccccccc
Confidence 45557899999999999999999987766 4456666 5556655555543 455 4445555555443
No 96
>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins. The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.
Probab=94.74 E-value=1.1 Score=46.04 Aligned_cols=110 Identities=16% Similarity=0.084 Sum_probs=82.9
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhh
Q 000599 282 LIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL 361 (1400)
Q Consensus 282 l~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg 361 (1400)
+++.+++.+.....+.||..-.+--+.| .... .. -++.+.+|+++++..|..|+..|+.++..+.+.+|
T Consensus 2 ~~~~iekAT~~~l~~~dw~~ileicD~I----n~~~-~~------~k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG 70 (139)
T cd03567 2 LEAWLNKATNPSNREEDWEAIQAFCEQI----NKEP-EG------PQLAVRLLAHKIQSPQEKEALQALTVLEACMKNCG 70 (139)
T ss_pred HHHHHHHHcCccCCCCCHHHHHHHHHHH----HcCC-cc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcC
Confidence 3455677777777889998655444444 3221 11 35678889999999999999999999999999999
Q ss_pred hhHHHHH--HHHHHHHHHHhch------hhHHHHHHHHHHHHHHHHhCC
Q 000599 362 GDFEACA--EMFIPVLFKLVVI------TVLVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 362 ~~f~~~a--~~~lp~Ll~~~~~------~kkvi~~sa~~al~~i~~~~~ 402 (1400)
..|...+ +.|+..|++++.. +...|.+.....|..|.....
T Consensus 71 ~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~f~ 119 (139)
T cd03567 71 ERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTLELP 119 (139)
T ss_pred HHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 9998754 5699999998853 356788888888888876553
No 97
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=94.70 E-value=0.51 Score=61.97 Aligned_cols=175 Identities=14% Similarity=0.146 Sum_probs=123.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC---CChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Q 000599 1186 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD---ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 1262 (1400)
Q Consensus 1186 ~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d---~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~ 1262 (1400)
+|+.|-.-|..+.+..+.....+ +..+-..|++.|.+ .+. .-...+.++..++-.++..+++ +...+|+++...
T Consensus 749 errgael~L~~l~~~fg~sl~~k-lp~l~~~L~~~L~~~~~~~d-~~~~s~~vf~s~~~~m~s~l~~-~~~~l~~l~~~~ 825 (1549)
T KOG0392|consen 749 ERRGAELFLKILSKMFGGSLAAK-LPHLWDFLLKALSGLIDGND-EFLSSFEVFNSLAPLMHSFLHP-LGSLLPRLFFFV 825 (1549)
T ss_pred HhhhHHHHHHHHHHHhhHHHHHh-cchHHHHHHHhhhccCCCCc-chhhhHHHHHHHHHhhhhhhhh-hhhhhhHHHHhc
Confidence 56666666666665555444321 22222345555543 221 2223566777777666777777 888999999999
Q ss_pred cCCcHHHHHHHHHHHHHHHhhcChhh---HHHhhhhhccCC-chhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHH
Q 000599 1263 KDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEA 1338 (1400)
Q Consensus 1263 ~D~~k~V~~aA~~al~~i~~~~~p~~---~l~~l~~~l~s~-~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~ 1338 (1400)
...+..|+.+|..|+.++.+.-.-+. |+..+.|++..- +.-.+.++.+.+..|. +...-.+....+-++|.|...
T Consensus 826 ~s~~~a~r~~~ar~i~~~~k~~~~e~m~~v~~~~~~ll~~~~~~~~r~~a~e~~~~l~-~~l~~~l~~~~~Llv~pllr~ 904 (1549)
T KOG0392|consen 826 RSIHIAVRYAAARCIGTMFKSATRETMATVINGFLPLLGDLDKFVRRQGADELIELLD-AVLMVGLVPYNPLLVVPLLRR 904 (1549)
T ss_pred ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccchhhHhhhhhHHHHHHHHH-Hhhcccccccceeehhhhhcc
Confidence 99999999999999999998766654 667777777543 3444555555555554 444466777889999999999
Q ss_pred hcCCCHHHHHHHHHHHHHHHHHhhhh
Q 000599 1339 FGNQSADVRKTVVFCLVDIYIMLGKA 1364 (1400)
Q Consensus 1339 ~~d~~seVRkaAv~~lv~~~~~lge~ 1364 (1400)
|.|....||.+|..|+..+--+++.+
T Consensus 905 msd~~d~vR~aat~~fa~lip~~~le 930 (1549)
T KOG0392|consen 905 MSDQIDSVREAATKVFAKLIPLLPLE 930 (1549)
T ss_pred cccchHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999988853
No 98
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=94.44 E-value=5.3 Score=45.90 Aligned_cols=191 Identities=15% Similarity=0.114 Sum_probs=113.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhcc-----CChHhHHHHHHHHHhhhccC-CcchHHHHHHHHHHHHHHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKS-----LTSAEVTSLVDCCLDLLKDN-NFKVSQGALQSLASAAVLSGEH 75 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~-----~~~~~~~~lv~~l~~~l~Ds-N~~V~~~aL~~l~~l~~~l~~~ 75 (1400)
.++..+|.|.|....++|.-.+.+++.....- +++.-+..|+++ +.+. +-...-.|-=+|+.++.+-...
T Consensus 74 p~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvef----m~~~q~~mlqfEAaWalTNiaSGtt~Q 149 (526)
T COG5064 74 PQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEF----MDEIQRDMLQFEAAWALTNIASGTTQQ 149 (526)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHH----HHhcchhHHHHHHHHHHhhhccCcccc
Confidence 35677899999999999999999999764311 111112333333 3222 2223334444555555432222
Q ss_pred hHhh-hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhc--hh-----HHHHHHhhhhhhcCChh-HHHHHHHHHHHHH
Q 000599 76 FKLH-FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS--PT-----IIVERAGSYAWTHRSWR-VREEFARTVTSAI 146 (1400)
Q Consensus 76 ~~~~-~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~--p~-----~V~e~l~~~~~~~Knpk-vr~~~l~~L~~~l 146 (1400)
.+-. -...+|.++.-|.++...||+.+.=+|-.++--.. -+ -+++.++. .+....+. --.....|..+-+
T Consensus 150 TkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~-ll~ss~~~ismlRn~TWtLSNl 228 (526)
T COG5064 150 TKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLG-LLLSSAIHISMLRNATWTLSNL 228 (526)
T ss_pred eEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHH-HHHhccchHHHHHHhHHHHHHh
Confidence 2211 12457999999999999999999888877752100 11 24556665 33333232 2234567776655
Q ss_pred HhccCcc---hhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhh
Q 000599 147 GLFSATE---LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDEL 198 (1400)
Q Consensus 147 ~~fg~~~---l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L 198 (1400)
+. |-+. -+.....+|.+.+++-..+++|---|++.+..|---..+.+..-|
T Consensus 229 cR-GknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avl 282 (526)
T COG5064 229 CR-GKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVL 282 (526)
T ss_pred hC-CCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHH
Confidence 43 3221 122278999999999999999999999988766433333333333
No 99
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.41 E-value=2 Score=52.84 Aligned_cols=192 Identities=15% Similarity=0.171 Sum_probs=132.4
Q ss_pred HHHHHhc-CCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhh-ccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 3 EALELAR-AKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 3 ~~l~~l~-s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l-~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
.+++... ..++..|..+.+.|..++++... ...+..+++.+...+ ..........+++++.-+.+++=-.-.+..
T Consensus 193 ~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~---~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~ 269 (415)
T PF12460_consen 193 SLLNLALSSEDEFSRLAALQLLASLVNKWPD---DDDLDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHPLA 269 (415)
T ss_pred HHHHHHHcCCChHHHHHHHHHHHHHHcCCCC---hhhHHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCchH
Confidence 3444433 45699999999999999876432 234667777665544 566777788888888887776522223567
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH------------h---chhHHHHHHhh---hhhhcCChhHHHHHHHHH
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEV------------S---SPTIIVERAGS---YAWTHRSWRVREEFARTV 142 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~------------~---~p~~V~e~l~~---~~~~~Knpkvr~~~l~~L 142 (1400)
..++..|++-|+|.+ +...+.+++..++.- + --|.++..+++ .+++..+..+|...+..|
T Consensus 270 ~~~~~~L~~lL~~~~--~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~AL 347 (415)
T PF12460_consen 270 TELLDKLLELLSSPE--LGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTAL 347 (415)
T ss_pred HHHHHHHHHHhCChh--hHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHH
Confidence 778888999898843 777777777777631 0 12344554443 245555555788888888
Q ss_pred HHHHHhccCcch-hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhh
Q 000599 143 TSAIGLFSATEL-TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1400)
Q Consensus 143 ~~~l~~fg~~~l-~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~ 199 (1400)
...++.-....+ +-...++|.+.+.|.-+|++||.++.+++..+.....+.+..++.
T Consensus 348 s~ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~hl~ 405 (415)
T PF12460_consen 348 SHLLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISEHLS 405 (415)
T ss_pred HHHHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHH
Confidence 888876554332 112789999999999999999999999999998776555665554
No 100
>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM. Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....
Probab=94.39 E-value=1.6 Score=45.12 Aligned_cols=117 Identities=21% Similarity=0.221 Sum_probs=84.3
Q ss_pred HHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHh
Q 000599 281 ELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL 360 (1400)
Q Consensus 281 dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~L 360 (1400)
.++..+++.+.....+.||..-. .|..++... .. .-++.+.+|.++++..|..|+..|+.++..+.+..
T Consensus 5 ~~~~li~kATs~~~~~~Dw~~~l----~icD~i~~~-~~------~~kea~~~l~krl~~~~~~vq~~aL~lld~lvkNc 73 (140)
T PF00790_consen 5 SITELIEKATSESLPSPDWSLIL----EICDLINSS-PD------GAKEAARALRKRLKHGNPNVQLLALTLLDALVKNC 73 (140)
T ss_dssp HHHHHHHHHT-TTSSS--HHHHH----HHHHHHHTS-TT------HHHHHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHS
T ss_pred hHHHHHHHHhCcCCCCCCHHHHH----HHHHHHHcC-Cc------cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcC
Confidence 45566778887777788997544 344455443 11 13578889999999999999999999999999999
Q ss_pred hhhHHHHH--HHHHHHHHHHhchhhHH----HHHHHHHHHHHHHHhCCCcchHH
Q 000599 361 LGDFEACA--EMFIPVLFKLVVITVLV----IAESSDNCIKTMLRNCKAVRVLP 408 (1400)
Q Consensus 361 g~~f~~~a--~~~lp~Ll~~~~~~kkv----i~~sa~~al~~i~~~~~~~rll~ 408 (1400)
|..|...+ ..|+..|.+++..+... |++.+...|..|....+...-++
T Consensus 74 g~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~~f~~~~~~~ 127 (140)
T PF00790_consen 74 GPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAEAFKSDPELS 127 (140)
T ss_dssp HHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHHHTTTSTTGH
T ss_pred CHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHHHHCCCCCch
Confidence 99997754 55888888877765332 78888888888888775433333
No 101
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.33 E-value=21 Score=45.32 Aligned_cols=180 Identities=12% Similarity=0.112 Sum_probs=107.3
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
.|++..|.|+.--.|..|+--|.+.|.++++. +..-+.-|+.-+.|..+.|+.+|...|+.|+.+.++ .|+.
T Consensus 147 ~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeA-----lr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPk---nyL~ 218 (877)
T KOG1059|consen 147 DDVFTLLNSSKPYVRKKAILLLYKVFLKYPEA-----LRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQ---NYLQ 218 (877)
T ss_pred HHHHHHHhcCchHHHHHHHHHHHHHHHhhhHh-----HhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCc---cccc
Confidence 47889999999999999999999999886543 333444556678999999999999999999977544 3322
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch------hHHHHHHhhhhhhcCChh-HHHHHHHHHHHHHHhccC-cc
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP------TIIVERAGSYAWTHRSWR-VREEFARTVTSAIGLFSA-TE 153 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p------~~V~e~l~~~~~~~Knpk-vr~~~l~~L~~~l~~fg~-~~ 153 (1400)
+.|.+.+-|-++....- ..+ |+.++-..+| ..+++.|++ .+.+-... +.-||+++++..=-.-|. .+
T Consensus 219 -LAP~ffkllttSsNNWm--LIK-iiKLF~aLtplEPRLgKKLieplt~-li~sT~AmSLlYECvNTVVa~s~s~g~~d~ 293 (877)
T KOG1059|consen 219 -LAPLFYKLLVTSSNNWV--LIK-LLKLFAALTPLEPRLGKKLIEPITE-LMESTVAMSLLYECVNTVVAVSMSSGMSDH 293 (877)
T ss_pred -ccHHHHHHHhccCCCee--hHH-HHHHHhhccccCchhhhhhhhHHHH-HHHhhHHHHHHHHHHHHheeehhccCCCCc
Confidence 33444444433222110 000 1111111111 123333333 22222221 233455555443111222 22
Q ss_pred hhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhH
Q 000599 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF 194 (1400)
Q Consensus 154 l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l 194 (1400)
......++..+-.+++|+|++.|--+..++..+.+.....+
T Consensus 294 ~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~V 334 (877)
T KOG1059|consen 294 SASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAV 334 (877)
T ss_pred HHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHH
Confidence 22225788888889999999999999888888876655443
No 102
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.33 E-value=1.2 Score=45.99 Aligned_cols=110 Identities=15% Similarity=0.087 Sum_probs=81.2
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhh
Q 000599 282 LIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL 361 (1400)
Q Consensus 282 l~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg 361 (1400)
+++.+++.+.....+.||..-++--+.|+ .. ... -++.+.+|+++++..|..|+..|+.++..+.+.+|
T Consensus 5 ~~~~I~kATs~~l~~~dw~~ileicD~In----~~-~~~------~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG 73 (142)
T cd03569 5 FDELIEKATSELLGEPDLASILEICDMIR----SK-DVQ------PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCG 73 (142)
T ss_pred HHHHHHHHcCcccCccCHHHHHHHHHHHh----CC-CCC------HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCC
Confidence 55667778776667899986555555444 22 111 35788899999999999999999999999999999
Q ss_pred hhHHHHH--HHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHhCC
Q 000599 362 GDFEACA--EMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 362 ~~f~~~a--~~~lp~Ll~~~~~-~kkvi~~sa~~al~~i~~~~~ 402 (1400)
..|...+ +.|+..|.+.+.+ ....|++.+...|..|.....
T Consensus 74 ~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~ 117 (142)
T cd03569 74 THFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALAFR 117 (142)
T ss_pred HHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHhC
Confidence 9998743 4588888877753 445566777777777776554
No 103
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.21 E-value=0.49 Score=55.44 Aligned_cols=128 Identities=18% Similarity=0.274 Sum_probs=104.6
Q ss_pred HHHHHHHHHHhhcccccccc--HHHHHHHHH-HHhcCCcHHHHHHHHHHHHHHHhhcC--hhhHHHhhhhhccCCchhhH
Q 000599 1231 VALSLINEMLKNQKDVMEDS--VEIVIEKLL-HVTKDAVPKVSNEAEHCLTVVLSQYD--PFRCLSVIVPLLVTEDEKTL 1305 (1400)
Q Consensus 1231 ~aL~~L~~l~~~~~~~~~~~--~e~~l~~ll-~~~~D~~k~V~~aA~~al~~i~~~~~--p~~~l~~l~~~l~s~~~~~~ 1305 (1400)
.||.+++.|+++....+.+. ++.++..++ -+...+...|++.|..|+...+-.-. ....++++...+..++...+
T Consensus 2 kcL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~~~~~~~~~v~ 81 (298)
T PF12719_consen 2 KCLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQALQKDDEEVK 81 (298)
T ss_pred cHHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHhCCHHHH
Confidence 48999999999988777764 457887777 57888889999999999987764422 23467777777766788899
Q ss_pred hHHHHHHHHHHhhcCHHHHHhhhh--------hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1306 VTCINCLTKLVGRLSQEELMAQLP--------SFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1306 ~~alk~l~~lv~~~~~~~l~~~l~--------~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
..|++.+.-++-.+|.+.+...-. .++..+.+.+.+.+++||-.|+.++.++.
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLl 142 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLL 142 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHH
Confidence 999999999999999888766553 78889999999999999999999977754
No 104
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=94.14 E-value=3.9 Score=52.60 Aligned_cols=158 Identities=20% Similarity=0.288 Sum_probs=116.3
Q ss_pred CChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHHhhcChh-------hHHHh
Q 000599 1224 ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQYDPF-------RCLSV 1292 (1400)
Q Consensus 1224 ~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~----k~V~~aA~~al~~i~~~~~p~-------~~l~~ 1292 (1400)
.++.|...+..++.++++ ......++.+.+||.++..++-+. .....-|.+.+.++++..||+ .+++.
T Consensus 585 ~DP~V~~~~qd~f~el~q-~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~Fpa 663 (1005)
T KOG2274|consen 585 EDPQVASLAQDLFEELLQ-IAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFPA 663 (1005)
T ss_pred CCchHHHHHHHHHHHHHH-HHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhHH
Confidence 356888889999999998 456788999999999998887544 566778888999999999885 36776
Q ss_pred hhhhc-cCCchhhHhHHHHHHHHHHhhcCHHHHHh-------hhhhhHHHHHHHhcCCCHHHHHHHH-HHHHHHHHHhhh
Q 000599 1293 IVPLL-VTEDEKTLVTCINCLTKLVGRLSQEELMA-------QLPSFLPALFEAFGNQSADVRKTVV-FCLVDIYIMLGK 1363 (1400)
Q Consensus 1293 l~~~l-~s~~~~~~~~alk~l~~lv~~~~~~~l~~-------~l~~liP~l~~~~~d~~seVRkaAv-~~lv~~~~~lge 1363 (1400)
+..+. .|++..+...+-+||..++ ..+.+++.. .+-.||-++.+-++-..++---+=| .-++.+..|+|.
T Consensus 664 Vak~tlHsdD~~tlQ~~~EcLra~I-s~~~eq~~t~~~e~g~~~~yImqV~sqLLdp~~sds~a~~VG~lV~tLit~a~~ 742 (1005)
T KOG2274|consen 664 VAKITLHSDDHETLQNATECLRALI-SVTLEQLLTWHDEPGHNLWYIMQVLSQLLDPETSDSAAAFVGPLVLTLITHASS 742 (1005)
T ss_pred hHhheeecCChHHHHhHHHHHHHHH-hcCHHHHHhhccCCCccHHHHHHHHHHHcCCccchhHHHHHhHHHHHHHHHHHH
Confidence 66655 5888899999999999999 566666643 2458899999888765555433322 235567788888
Q ss_pred hcchhhhhhcHHHHHHHHHHHHhhhhc
Q 000599 1364 AFLPYLERLNSTQLRLVTIYANRISQA 1390 (1400)
Q Consensus 1364 ~~~p~l~~L~~s~~kll~~yi~r~~~~ 1390 (1400)
++-|-+.. .|..-|.||++.
T Consensus 743 el~~n~d~-------IL~Avisrmq~a 762 (1005)
T KOG2274|consen 743 ELGPNLDQ-------ILRAVISRLQQA 762 (1005)
T ss_pred HhchhHHH-------HHHHHHHHHHHh
Confidence 88876652 355556665544
No 105
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.13 E-value=22 Score=44.90 Aligned_cols=378 Identities=18% Similarity=0.206 Sum_probs=212.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhH-hhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFK-LHF 80 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~-~~~ 80 (1400)
++.++.|.+.++.++.-||-.+.-+++.+.+ -+..++..+++-+...|..-+-.||.++..+=.+ .+. .+.
T Consensus 77 mEaV~LLss~kysEKqIGYl~is~L~n~n~d-----l~klvin~iknDL~srn~~fv~LAL~~I~niG~r---e~~ea~~ 148 (938)
T KOG1077|consen 77 MEAVNLLSSNKYSEKQIGYLFISLLLNENSD-----LMKLVINSIKNDLSSRNPTFVCLALHCIANIGSR---EMAEAFA 148 (938)
T ss_pred HHHHHHhhcCCccHHHHhHHHHHHHHhcchH-----HHHHHHHHHHhhhhcCCcHHHHHHHHHHHhhccH---hHHHHhh
Confidence 4678899999999999999999888876421 1223445667777888999899999999876432 332 232
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhh
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAI 160 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~ 160 (1400)
.. +|-|+ .-|+..+-||.+|.-||+.+.+. +|+ .++. ..+
T Consensus 149 ~D-I~KlL-vS~~~~~~vkqkaALclL~L~r~-spD------------------------------------l~~~-~~W 188 (938)
T KOG1077|consen 149 DD-IPKLL-VSGSSMDYVKQKAALCLLRLFRK-SPD------------------------------------LVNP-GEW 188 (938)
T ss_pred hh-hHHHH-hCCcchHHHHHHHHHHHHHHHhc-Ccc------------------------------------ccCh-hhH
Confidence 22 33222 34788888888888888887764 221 1112 356
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhh----
Q 000599 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALE---- 236 (1400)
Q Consensus 161 lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~---- 236 (1400)
...++.+|+|++-.|-.+|..++..|.+...+..+-.+. + .+..|..-.-.. +. +-.+ - .-|..|.
T Consensus 189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~-----~-avs~L~riv~~~-~t-~~qd-Y-Tyy~vP~PWL~ 258 (938)
T KOG1077|consen 189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLP-----L-AVSRLSRIVVVV-GT-SLQD-Y-TYYFVPAPWLQ 258 (938)
T ss_pred HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHH-----H-HHHHHHHHHhhc-cc-chhh-c-eeecCCChHHH
Confidence 667788888888888888888888888777665544432 1 122221111100 00 0000 0 0000000
Q ss_pred hccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcC---CCCCHHHHHHH---HHHHH
Q 000599 237 IKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLV---PDKDWSVRIAA---MQRVE 310 (1400)
Q Consensus 237 ~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~---~~~dW~~R~~A---L~~l~ 310 (1400)
.+-. |-.... + .+. +-.+...+.+.++.|..... ..++-+++..- |=...
T Consensus 259 vKl~-----rlLq~~-p----~~~--------------D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI 314 (938)
T KOG1077|consen 259 VKLL-----RLLQIY-P----TPE--------------DPSTRARLNEVLERILNKAQEPPKSKKVQHSNAKNAVLFEAI 314 (938)
T ss_pred HHHH-----HHHHhC-C----CCC--------------CchHHHHHHHHHHHHHhccccCccccchHhhhhHHHHHHHHH
Confidence 0000 000000 0 000 00011222233344443332 23343333221 11111
Q ss_pred HHHhcCCCCc-hhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhc-hhhHHHH
Q 000599 311 GLVLGGAADH-PCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEA-CAEMFIPVLFKLVV-ITVLVIA 387 (1400)
Q Consensus 311 ~ll~~~~~~~-~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~-~a~~~lp~Ll~~~~-~~kkvi~ 387 (1400)
.++.. .|- ++ .+..-+..|.+-+.+.-+++--.|++.+..|+.. .|.+ .++.-...++..+. +.--.|+
T Consensus 315 ~l~~h--~D~e~~---ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss---~~s~davK~h~d~Ii~sLkterDvSir 386 (938)
T KOG1077|consen 315 SLAIH--LDSEPE---LLSRAVNQLGQFLSHRETNIRYLALESMCKLASS---EFSIDAVKKHQDTIINSLKTERDVSIR 386 (938)
T ss_pred HHHHH--cCCcHH---HHHHHHHHHHHHhhcccccchhhhHHHHHHHHhc---cchHHHHHHHHHHHHHHhccccchHHH
Confidence 22211 111 22 2334445555555666666666677777776654 3322 23333555666666 5556688
Q ss_pred HHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH---
Q 000599 388 ESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE--- 464 (1400)
Q Consensus 388 ~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e--- 464 (1400)
..+..-|-+|+.--....++..++..+ .+--+.+|.+...=..++-++|.+. ..=+++.+.+.|..+ +|-..|
T Consensus 387 rravDLLY~mcD~~Nak~IV~elLqYL-~tAd~sireeivlKvAILaEKyAtD--y~WyVdviLqLiria-gd~vsdeVW 462 (938)
T KOG1077|consen 387 RRAVDLLYAMCDVSNAKQIVAELLQYL-ETADYSIREEIVLKVAILAEKYATD--YSWYVDVILQLIRIA-GDYVSDEVW 462 (938)
T ss_pred HHHHHHHHHHhchhhHHHHHHHHHHHH-hhcchHHHHHHHHHHHHHHHHhcCC--cchhHHHHHHHHHHh-cccccHHHH
Confidence 888888888877666677888888888 4457889999998888888999763 565677777766655 466555
Q ss_pred ----------------HHHHHHhhC
Q 000599 465 ----------------RSRRLFSSF 473 (1400)
Q Consensus 465 ----------------~A~~l~~~l 473 (1400)
.|.++|..|
T Consensus 463 ~RvvQiVvNnedlq~yaak~~fe~L 487 (938)
T KOG1077|consen 463 YRVVQIVVNNEDLQGYAAKRLFEYL 487 (938)
T ss_pred HHhheeEecchhhhHHHHHHHHHHH
Confidence 678888877
No 106
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.10 E-value=1.5 Score=55.96 Aligned_cols=201 Identities=16% Similarity=0.113 Sum_probs=132.2
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccc
Q 000599 1170 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 1249 (1400)
Q Consensus 1170 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~ 1249 (1400)
.+.+..+-+. .+.-|..|+..|+.+++.-..... ..-..++..+++.++|.++-|=-.|...+..+|..
T Consensus 730 qeai~sl~d~---qvpik~~gL~~l~~l~e~r~~~~~-~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev------- 798 (982)
T KOG4653|consen 730 QEAISSLHDD---QVPIKGYGLQMLRHLIEKRKKATL-IQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV------- 798 (982)
T ss_pred HHHHHHhcCC---cccchHHHHHHHHHHHHhcchhhh-hhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------
Confidence 4444444333 246889999999999985533322 24677888999999999988887888888888863
Q ss_pred cHHHHHHHHHHHhcCCcH----HHHHHHHHHHHHHHhhcChh------hHHHhhhhhccCCchhhHhHHHHHHHHHHhhc
Q 000599 1250 SVEIVIEKLLHVTKDAVP----KVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1319 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k----~V~~aA~~al~~i~~~~~p~------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~ 1319 (1400)
|-+.++|.+.+-|.+..+ +.+-..-+|+-.++...++. .++.....+++.-+..-|+.++..++.+....
T Consensus 799 y~e~il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~ 878 (982)
T KOG4653|consen 799 YPEDILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLSGVREPDHEFRASSLANLGQLCQLL 878 (982)
T ss_pred cchhhHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHH
Confidence 778899999997754322 23333345554555554552 34444445555444444677777777776443
Q ss_pred C---HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHHHH
Q 000599 1320 S---QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYA 1384 (1400)
Q Consensus 1320 ~---~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~~yi 1384 (1400)
. .+.+...+.-| +.-...|.+.-||+|||--++.+-.-.|+++.|++..+.--..+.+.-|.
T Consensus 879 a~~vsd~~~ev~~~I---l~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~v 943 (982)
T KOG4653|consen 879 AFQVSDFFHEVLQLI---LSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYV 943 (982)
T ss_pred hhhhhHHHHHHHHHH---HHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHH
Confidence 3 34333333222 23344599999999999999999999999999988666444455555554
No 107
>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting). The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.
Probab=94.10 E-value=0.39 Score=49.62 Aligned_cols=105 Identities=13% Similarity=0.142 Sum_probs=75.0
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--HH
Q 000599 782 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RI 859 (1400)
Q Consensus 782 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~l 859 (1400)
....||..=+ .+-+.+.+... .-...++.+.++|...|.+|...+|+.|..++..+|..|+..+. .+
T Consensus 17 l~~~dw~~il----eicD~In~~~~-------~~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~f 85 (142)
T cd03569 17 LGEPDLASIL----EICDMIRSKDV-------QPKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREF 85 (142)
T ss_pred cCccCHHHHH----HHHHHHhCCCC-------CHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHH
Confidence 3466775433 34455544333 23467788999999999999999999999999999998865443 34
Q ss_pred HHHHHHhhC-CchhhhHHHHHHHHHHHhccCCchhhHHH
Q 000599 860 LPHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPA 897 (1400)
Q Consensus 860 l~~L~~klg-D~k~~vr~~~~~~L~~~~~~~~~~~~l~~ 897 (1400)
+..|..-+. .....|+.++..++..|.+.|..+-.++.
T Consensus 86 l~~l~~l~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 124 (142)
T cd03569 86 MDELKDLIKTTKNEEVRQKILELIQAWALAFRNKPQLKY 124 (142)
T ss_pred HHHHHHHHcccCCHHHHHHHHHHHHHHHHHhCCCcccHH
Confidence 444333332 56778999999999999999976654433
No 108
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=93.96 E-value=0.99 Score=51.37 Aligned_cols=169 Identities=12% Similarity=0.162 Sum_probs=105.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhh-hc-cCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDL-LK-DNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~-l~-DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+...|.+.+-+.|..|++.|..+....+. ...+..++..+... +. ..|..++..||.+|..+.. ..+....+.
T Consensus 59 I~~lL~~p~~~vr~~AL~aL~Nls~~~en---~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv--~~~~~~~l~ 133 (254)
T PF04826_consen 59 IGSLLNDPNPSVREKALNALNNLSVNDEN---QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTV--TNDYHHMLA 133 (254)
T ss_pred HHHHcCCCChHHHHHHHHHHHhcCCChhh---HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCC--CcchhhhHH
Confidence 45667788999999999999866433211 12244444444332 33 3488999999999999852 223334455
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhc--hh----HHHHHHhhhhhhcCCh-hHHHHHHHHHHHHHHhccCc--
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSS--PT----IIVERAGSYAWTHRSW-RVREEFARTVTSAIGLFSAT-- 152 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~--p~----~V~e~l~~~~~~~Knp-kvr~~~l~~L~~~l~~fg~~-- 152 (1400)
..+|.++.-|......+|..+.++|..+.+.-. .+ .++..++. .|..+.+ -+...++.|+...-+.+...
T Consensus 134 ~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~~~~Ll~~q~~~~~~~-Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~ 212 (254)
T PF04826_consen 134 NYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDMTRELLSAQVLSSFLS-LFNSSESKENLLRVLTFFENINENIKKEAY 212 (254)
T ss_pred hhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHHHHHHHhccchhHHHH-HHccCCccHHHHHHHHHHHHHHHhhCcccc
Confidence 567777766655566699999999999976311 11 23344443 4655544 34566666665554444322
Q ss_pred ----------chh--h--hhhhHHHHHHhhCCCChhHHHH
Q 000599 153 ----------ELT--L--QRAILPPILQMLNDPNPGVREA 178 (1400)
Q Consensus 153 ----------~l~--l--~k~~lp~l~~~L~d~n~~VR~a 178 (1400)
.+- | .+.+-+.+..++.|+|++||+.
T Consensus 213 ~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~d~ev~~~ 252 (254)
T PF04826_consen 213 VFVQDDFSEDSLFSLFGESSQLAKKLQALANHPDPEVKEQ 252 (254)
T ss_pred eeccccCCchhHHHHHccHHHHHHHHHHHHcCCCHHHhhh
Confidence 110 0 1567888888899999999985
No 109
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=93.91 E-value=0.34 Score=49.98 Aligned_cols=105 Identities=13% Similarity=0.328 Sum_probs=73.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhcc-CCchHHHHHHHHHHHhhccccCCCchhHHH--H
Q 000599 782 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLD-DPHHKVAQAALSTLADIIPSCRKPFESYME--R 858 (1400)
Q Consensus 782 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~-Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ 858 (1400)
....||.-=++ +-+.+.+.... -+..++.+.++|. ..|.+|+..+|..|..++..+|..|+..+. .
T Consensus 14 l~~~dw~~ile----icD~In~~~~~-------~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~~fh~eiask~ 82 (141)
T cd03565 14 LQSEDWGLNME----ICDIINETEDG-------PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGHRFHVLVAKKD 82 (141)
T ss_pred CCCcCHHHHHH----HHHHHhCCCCc-------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence 34667754444 44445443322 3357788888887 469999999999999999999999986553 4
Q ss_pred HHHH-HHHhhC---CchhhhHHHHHHHHHHHhccCCchhhHHH
Q 000599 859 ILPH-VFSRLI---DPKELVRQPCSTTLDIVSKTYSVDSLLPA 897 (1400)
Q Consensus 859 ll~~-L~~klg---D~k~~vr~~~~~~L~~~~~~~~~~~~l~~ 897 (1400)
++.. |++.+. +....|+.++.+++..|.+.|..+-.++.
T Consensus 83 Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~~~~~l~~ 125 (141)
T cd03565 83 FIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFRGSPDLTG 125 (141)
T ss_pred hhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhCCCccchH
Confidence 5554 333333 33457999999999999999976655444
No 110
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.89 E-value=1.1 Score=53.94 Aligned_cols=194 Identities=15% Similarity=0.162 Sum_probs=133.2
Q ss_pred CChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHH-H
Q 000599 1182 GSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLL-H 1260 (1400)
Q Consensus 1182 ~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll-~ 1260 (1400)
..|.+|......+.++.+..-... ...++.++..+.....|++..+|..|++.|.-++.-.++++.-|.-.++..++ .
T Consensus 229 ~~~~~ritd~Af~ael~~~~~l~~-~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldaii~g 307 (533)
T KOG2032|consen 229 EKENGRITDIAFFAELKRPKELDK-TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAIIRG 307 (533)
T ss_pred hcccchHHHHHHHHHHhCcccccc-cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHHHHH
Confidence 346788888888888777653321 12467777788888888888999999999999998777776655444555555 5
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhh-------hhccCCchhhHhHHHHHHHHHHhhcCH---HHHH-hhhh
Q 000599 1261 VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV-------PLLVTEDEKTLVTCINCLTKLVGRLSQ---EELM-AQLP 1329 (1400)
Q Consensus 1261 ~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~-------~~l~s~~~~~~~~alk~l~~lv~~~~~---~~l~-~~l~ 1329 (1400)
+|.|-.++|.-.|..|+..+.....-..+-.++. +++.+.+-+.+..++-+.+.|..-.+. +... ....
T Consensus 308 L~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k 387 (533)
T KOG2032|consen 308 LYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKK 387 (533)
T ss_pred HhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHh
Confidence 6666679999999999988886655544333333 444577777889999988888754442 2221 1222
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHHH
Q 000599 1330 SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQL 1377 (1400)
Q Consensus 1330 ~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~~ 1377 (1400)
.+.| +.-.++|..+.|-+|..+.+-..|--++- +...|++++-...+
T Consensus 388 ~~~~-lllhl~d~~p~va~ACr~~~~~c~p~l~rke~~~~~q~~ld~~~ 435 (533)
T KOG2032|consen 388 RLAP-LLLHLQDPNPYVARACRSELRTCYPNLVRKELYHLFQESLDTDM 435 (533)
T ss_pred cccc-ceeeeCCCChHHHHHHHHHHHhcCchhHHHHHHHHHhhhhHHhH
Confidence 2222 35678999999999999988777766664 66677775554444
No 111
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.81 E-value=1.2 Score=54.01 Aligned_cols=172 Identities=20% Similarity=0.236 Sum_probs=100.5
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhccCC-h-H----------------------------hHHHHHHHHHhhhcc--CC
Q 000599 7 LARAKDTKERMAGVERLHQLLEASRKSLT-S-A----------------------------EVTSLVDCCLDLLKD--NN 54 (1400)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~-~-~----------------------------~~~~lv~~l~~~l~D--sN 54 (1400)
-|.+...-.|..|+.-|.++....+..+. | . .+..++..+..++.| -|
T Consensus 311 fL~s~rv~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~ 390 (898)
T COG5240 311 FLKSTRVVLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDG 390 (898)
T ss_pred HHhcchHHHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccC
Confidence 35677778888888888887765543221 1 1 123334444344444 24
Q ss_pred cch-HHHHHHHHHHHHHH----------------hhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhH
Q 000599 55 FKV-SQGALQSLASAAVL----------------SGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI 117 (1400)
Q Consensus 55 ~~V-~~~aL~~l~~l~~~----------------l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~ 117 (1400)
|++ +.-|++.|+..+.+ -|-.|+.|+-..+.-+++..-|+ ||.|.+.|..++|-|.-..
T Consensus 391 FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~s----kEraLe~LC~fIEDcey~~ 466 (898)
T COG5240 391 FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLLQEGGLEFKKYMVDAISDAMENDPDS----KERALEVLCTFIEDCEYHQ 466 (898)
T ss_pred ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHhhCchH----HHHHHHHHHHHHhhcchhH
Confidence 543 34455544433221 12257777666666666655554 4788889999988554434
Q ss_pred HHHHHhh----hhhhcCCh----------------hHHHHHHHHHHHHHHhccCcchh--hhhhhHHHHHHhhCCCChhH
Q 000599 118 IVERAGS----YAWTHRSW----------------RVREEFARTVTSAIGLFSATELT--LQRAILPPILQMLNDPNPGV 175 (1400)
Q Consensus 118 V~e~l~~----~~~~~Knp----------------kvr~~~l~~L~~~l~~fg~~~l~--l~k~~lp~l~~~L~d~n~~V 175 (1400)
+.-+++. .+-+.++| .||.+.+.+| ..||...-+ .+..+.-.+.+|++|.+.+|
T Consensus 467 I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aL----skf~ln~~d~~~~~sv~~~lkRclnD~DdeV 542 (898)
T COG5240 467 ITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQAL----SKFALNISDVVSPQSVENALKRCLNDQDDEV 542 (898)
T ss_pred HHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHH----HHhccCccccccHHHHHHHHHHHhhcccHHH
Confidence 4444432 23334444 3555555444 567643211 22567777889999999999
Q ss_pred HHHHHHHHHHH
Q 000599 176 REAAILCIEEM 186 (1400)
Q Consensus 176 R~aA~~~l~~l 186 (1400)
|+.|.-++-.|
T Consensus 543 RdrAsf~l~~~ 553 (898)
T COG5240 543 RDRASFLLRNM 553 (898)
T ss_pred HHHHHHHHHhh
Confidence 99998776655
No 112
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=93.65 E-value=0.44 Score=48.71 Aligned_cols=99 Identities=17% Similarity=0.232 Sum_probs=72.9
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--HHH
Q 000599 783 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RIL 860 (1400)
Q Consensus 783 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ll 860 (1400)
...||. +...+-+++.+... .-+..++.+.++|..+|.+|...+|..|-.++..+|..|+..+. .++
T Consensus 14 ~~~D~~----~il~icd~I~~~~~-------~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl 82 (133)
T cd03561 14 EEPDWA----LNLELCDLINLKPN-------GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFL 82 (133)
T ss_pred CCccHH----HHHHHHHHHhCCCC-------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHH
Confidence 355664 34445566655543 33467788999999999999999999999999999999855543 344
Q ss_pred HHHHHhhC---CchhhhHHHHHHHHHHHhccCCch
Q 000599 861 PHVFSRLI---DPKELVRQPCSTTLDIVSKTYSVD 892 (1400)
Q Consensus 861 ~~L~~klg---D~k~~vr~~~~~~L~~~~~~~~~~ 892 (1400)
..|++-+. .....|+.++.+++..|.+.|+.+
T Consensus 83 ~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~~ 117 (133)
T cd03561 83 LELVKIAKNSPKYDPKVREKALELILAWSESFGGH 117 (133)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 44433332 346679999999999999999765
No 113
>PF10274 ParcG: Parkin co-regulated protein; InterPro: IPR019399 This family of proteins is transcribed anti-sense along the DNA to the Parkin gene product and the two appear to be transcribed under the same promoter. The protein has predicted alpha-helical and beta-sheet domains which suggest its function is in the ubiquitin/proteasome system []. Mutations in parkin are the genetic cause of early-onset and autosomal recessive juvenile parkinsonism.
Probab=93.64 E-value=0.62 Score=49.74 Aligned_cols=113 Identities=19% Similarity=0.249 Sum_probs=87.2
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHh-hhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHH---HHHhhhhhHh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEA-SRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASA---AVLSGEHFKL 78 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~-~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l---~~~l~~~~~~ 78 (1400)
-|+++|..++--.|.-|.+.+.++++. ...++ .+-+..++--++..++..|..|...+|++|..+ ....|..+.+
T Consensus 42 if~dGL~Et~~Py~flA~~g~~dll~~~~~~ki-lPvlPqLI~plk~AL~tr~~~V~~~~L~~Lq~Lv~~~~~vG~aLvP 120 (183)
T PF10274_consen 42 IFFDGLRETEHPYRFLARQGIKDLLERGGGEKI-LPVLPQLIIPLKRALNTRDPEVFCATLKALQQLVTSSDMVGEALVP 120 (183)
T ss_pred HHHhhhhccCccHHHHHHHHHHHHHHhcchhHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 478999999999999999999999987 32221 222445666667899999999999999999999 5567889999
Q ss_pred hhhhhHHHHH----HH--hCC-----CChhHHHHHHHHHHHHHHHhchh
Q 000599 79 HFNALVPAVV----ER--LGD-----AKQPVRDAARRLLLTLMEVSSPT 116 (1400)
Q Consensus 79 ~~~~ilp~Ll----eK--LgD-----~K~~vre~a~~~L~~l~e~~~p~ 116 (1400)
|...++|.+- .+ +|| .+..+++...++|..+-...+++
T Consensus 121 yyrqLLp~ln~f~~k~~n~gd~i~y~~~~~~~dlI~etL~~lE~~GG~d 169 (183)
T PF10274_consen 121 YYRQLLPVLNLFKNKNVNLGDGIDYRKRKNLGDLIQETLELLERNGGPD 169 (183)
T ss_pred HHHHHHHHHHHHHhcccCCCcccccccccchhHHHHHHHHHHHHhcChh
Confidence 9999999886 33 343 44557888888887777666664
No 114
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=93.54 E-value=1 Score=47.90 Aligned_cols=141 Identities=18% Similarity=0.310 Sum_probs=99.7
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHhhcCh
Q 000599 1209 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDP 1286 (1400)
Q Consensus 1209 ~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~-~~~~~~~e~~l~~ll~~~~D~-~k~V~~aA~~al~~i~~~~~p 1286 (1400)
..+.+..-+...|.+++..-|..++.++..+++.-+ ..|.++....+..++...+.+ ...+.+.|..++..|...
T Consensus 22 ~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~--- 98 (165)
T PF08167_consen 22 ALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL--- 98 (165)
T ss_pred HHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH---
Confidence 345555567778888888899999999999999763 457677788888888777652 234444554454444322
Q ss_pred hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcc
Q 000599 1287 FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL 1366 (1400)
Q Consensus 1287 ~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~ 1366 (1400)
..++++. .++.+.+++|.+++.+.+..++ .++...+..++-.+..+.+.-++
T Consensus 99 ------------~~~~p~l--------------~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~~ptt~r 150 (165)
T PF08167_consen 99 ------------IRGKPTL--------------TREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPHHPTTFR 150 (165)
T ss_pred ------------hcCCCch--------------HHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHCCcccc
Confidence 1222211 2355667888888888888887 88888999999999999999999
Q ss_pred hhhhhhcHHHHHHH
Q 000599 1367 PYLERLNSTQLRLV 1380 (1400)
Q Consensus 1367 p~l~~L~~s~~kll 1380 (1400)
||..++...=..+|
T Consensus 151 p~~~ki~~~l~~ll 164 (165)
T PF08167_consen 151 PFANKIESALLSLL 164 (165)
T ss_pred chHHHHHHHHHHHh
Confidence 99988876544443
No 115
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=93.54 E-value=0.49 Score=47.00 Aligned_cols=98 Identities=11% Similarity=0.180 Sum_probs=75.7
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHH--H
Q 000599 782 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMER--I 859 (1400)
Q Consensus 782 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~--l 859 (1400)
+....|..-.+.+..+-.++..... ..+.+++.+.+++.++|.+|...+|..|-.++..+++.|+.++.. +
T Consensus 9 T~~~~~~p~~~~i~~i~d~~~~~~~-------~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i~~~~~ 81 (115)
T cd00197 9 TSNENMGPDWPLIMEICDLINETNV-------GPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEVASNDF 81 (115)
T ss_pred cCCCCCCCCHHHHHHHHHHHHCCCc-------cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHHHHhHH
Confidence 3456666666778888888866533 455788999999999999999999999999999999999887643 3
Q ss_pred HHHHHH----h-hC-CchhhhHHHHHHHHHHHh
Q 000599 860 LPHVFS----R-LI-DPKELVRQPCSTTLDIVS 886 (1400)
Q Consensus 860 l~~L~~----k-lg-D~k~~vr~~~~~~L~~~~ 886 (1400)
+..++. + .| +.-..||.++..++..|.
T Consensus 82 ~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w~ 114 (115)
T cd00197 82 AVELLKFDKSKLLGDDVSTNVREKAIELVQLWA 114 (115)
T ss_pred HHHHHHhhccccccCCCChHHHHHHHHHHHHHh
Confidence 334432 2 34 556789999999999885
No 116
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=93.31 E-value=2 Score=52.35 Aligned_cols=184 Identities=13% Similarity=0.150 Sum_probs=128.3
Q ss_pred HHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh-cCh
Q 000599 1208 KYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-YDP 1286 (1400)
Q Consensus 1208 ~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~-~~p 1286 (1400)
+..+.++..+++-+..++..||-.+|.+|+-+....+.-=+..+-.++.++...+=|..+.|+..|.-|+..+-.- .++
T Consensus 87 ~~V~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~ne 166 (885)
T COG5218 87 ELVAGTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNE 166 (885)
T ss_pred HHHHHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCCh
Confidence 4456677788888888999999999999999998766544455777899999999999999999999998766543 333
Q ss_pred h-hHHHhhhhhccCC-chhhHhHHHHHH-------HHHHhhcC-HHHH------Hhhhhhh-----------HHHHHHHh
Q 000599 1287 F-RCLSVIVPLLVTE-DEKTLVTCINCL-------TKLVGRLS-QEEL------MAQLPSF-----------LPALFEAF 1339 (1400)
Q Consensus 1287 ~-~~l~~l~~~l~s~-~~~~~~~alk~l-------~~lv~~~~-~~~l------~~~l~~l-----------iP~l~~~~ 1339 (1400)
+ ++..++..+++.+ ...+|..|+-++ ..++|+.- .+.. .++||.+ +--+..++
T Consensus 167 en~~~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl 246 (885)
T COG5218 167 ENRIVNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGL 246 (885)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcc
Confidence 3 3555555566532 223344443332 12222221 1111 2233333 22567889
Q ss_pred cCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHHHHHHHHHHHhhhhcc
Q 000599 1340 GNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRISQAR 1391 (1400)
Q Consensus 1340 ~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~~kll~~yi~r~~~~~ 1391 (1400)
.|++-+||+|++.++..-|..--+ ++.-.+..|.-+..+.+-..|+..=+.|
T Consensus 247 ~dRe~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~F~~R 299 (885)
T COG5218 247 LDREFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGVFEKR 299 (885)
T ss_pred hhhhhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHHHhhc
Confidence 999999999999999998876555 7888899999999888888888765544
No 117
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=93.30 E-value=0.66 Score=58.12 Aligned_cols=112 Identities=11% Similarity=0.212 Sum_probs=82.2
Q ss_pred hhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhh---hhhhcCChhHHHHHHHHHHHHHHhccCcch
Q 000599 78 LHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGS---YAWTHRSWRVREEFARTVTSAIGLFSATEL 154 (1400)
Q Consensus 78 ~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~---~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l 154 (1400)
.|...++|.|+.-++-....||-...+=+.++++..+++.+-+.+++ .|+...|+-+|+.++..|...+...+...+
T Consensus 326 eyq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~L 405 (690)
T KOG1243|consen 326 EYQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNL 405 (690)
T ss_pred ccccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhh
Confidence 36777888888778877777887777777777777777655555443 378888888888888888777777766655
Q ss_pred hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 155 TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 155 ~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
+ -.++.++.++-.|.++.+|.-..-|++++-.+..
T Consensus 406 n--~Ellr~~ar~q~d~~~~irtntticlgki~~~l~ 440 (690)
T KOG1243|consen 406 N--GELLRYLARLQPDEHGGIRTNTTICLGKIAPHLA 440 (690)
T ss_pred c--HHHHHHHHhhCccccCcccccceeeecccccccc
Confidence 4 3677777777778888888888888777655433
No 118
>KOG2032 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.27 E-value=1.6 Score=52.69 Aligned_cols=178 Identities=19% Similarity=0.156 Sum_probs=126.3
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHH
Q 000599 784 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHV 863 (1400)
Q Consensus 784 s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L 863 (1400)
+.-|++|..+..++.++..+..- . -.+.++-++..+..+..||+.|+-.+++-.|+....-+++....|...+|..+
T Consensus 228 s~~~~~ritd~Af~ael~~~~~l--~-~~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~~~ldai 304 (533)
T KOG2032|consen 228 SEKENGRITDIAFFAELKRPKEL--D-KTGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKTTQLDAI 304 (533)
T ss_pred hhcccchHHHHHHHHHHhCcccc--c-ccccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHHHHHHHH
Confidence 77899999999999998865321 1 12467788888899999999999999999999999999999999999999999
Q ss_pred HHhhC-CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhh------ccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCcc
Q 000599 864 FSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL------DEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 936 (1400)
Q Consensus 864 ~~klg-D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l------~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~ 936 (1400)
+--|- +....|.=.+.++|..+.+......+-+++.... .+..+++.|.+..--.. .|++|.-.++.. .
T Consensus 305 i~gL~D~~~~~V~leam~~Lt~v~~~~~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg-~L~~l~g~~~e~---~ 380 (533)
T KOG2032|consen 305 IRGLYDDLNEEVQLEAMKCLTMVLEKASNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFG-ALAKLAGGGWEE---F 380 (533)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHHHhhhhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHH-HHHHHcCCCchh---h
Confidence 99984 3345566667888888876554444444333221 22246899998765554 466553333321 1
Q ss_pred hHHHHHHhhccc---ccCCCHHHHHHHHHHHHHHh
Q 000599 937 ILKLWLAKLTPL---VHDKNTKLKEAAITCIISVY 968 (1400)
Q Consensus 937 ~~~~~l~~i~~l---~~dks~~vR~aA~~~l~~ly 968 (1400)
.+.......+++ +.|+++.|-+|....+-..|
T Consensus 381 Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~ 415 (533)
T KOG2032|consen 381 FTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCY 415 (533)
T ss_pred hHHHHHhccccceeeeCCCChHHHHHHHHHHHhcC
Confidence 222223344554 68899999999988877655
No 119
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=93.18 E-value=1.2 Score=46.92 Aligned_cols=121 Identities=18% Similarity=0.192 Sum_probs=74.8
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhh--ccCChHhHHHHHHHHHh-------hh-ccCCc---ch------HHHHH
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASR--KSLTSAEVTSLVDCCLD-------LL-KDNNF---KV------SQGAL 62 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~--~~~~~~~~~~lv~~l~~-------~l-~DsN~---~V------~~~aL 62 (1400)
.+++..|.|.+-|+|.+|+++|..++.... ..++...+..+++.|.. .. ...+. .+ ...+.
T Consensus 7 ~~~~~~L~S~k~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL~~~a 86 (155)
T PF11640_consen 7 NSILRLLSSDKIKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRLSSCA 86 (155)
T ss_pred HHHHHHHhccccchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHHHHHH
Confidence 358899999999999999999999998764 44445566666666532 22 22222 32 34455
Q ss_pred HHHHHHHHHhhhhhH-hhhhhhHHHHHHHhCCCCh-hHHHHHHHHHHHHHHHhchhHHHHHH
Q 000599 63 QSLASAAVLSGEHFK-LHFNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEVSSPTIIVERA 122 (1400)
Q Consensus 63 ~~l~~l~~~l~~~~~-~~~~~ilp~LleKLgD~K~-~vre~a~~~L~~l~e~~~p~~V~e~l 122 (1400)
.+|..+++..-..++ ..+..++..|++-|.+... -+..-+.+.+-.+-...+-+..++.|
T Consensus 87 ~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L~~iL~~~~~~ehL 148 (155)
T PF11640_consen 87 SALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKILKAILSYPPHVEHL 148 (155)
T ss_pred HHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHCCChHHHHC
Confidence 666666666555554 5678888888888877662 23333333333333333333444444
No 120
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=93.15 E-value=0.49 Score=47.26 Aligned_cols=88 Identities=15% Similarity=0.218 Sum_probs=63.0
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHH---HHHHHHHHhc---
Q 000599 1190 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEI---VIEKLLHVTK--- 1263 (1400)
Q Consensus 1190 al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~---~l~~ll~~~~--- 1263 (1400)
.+.+|+++..... ..|..|+..|++.|+++++-|...||.+|.++|..-...|..++.- ++-.+.+--+
T Consensus 21 ~~~Eia~~t~~s~-----~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~D 95 (122)
T cd03572 21 LYEEIAKLTRKSV-----GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPD 95 (122)
T ss_pred HHHHHHHHHHcCH-----HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCC
Confidence 4556666665421 2478899999999999888898999999999999877667665443 2222222212
Q ss_pred -----CCcHHHHHHHHHHHHHHHh
Q 000599 1264 -----DAVPKVSNEAEHCLTVVLS 1282 (1400)
Q Consensus 1264 -----D~~k~V~~aA~~al~~i~~ 1282 (1400)
+..+.|+.+|.+++..|..
T Consensus 96 p~~Gd~~~~~VR~~A~El~~~if~ 119 (122)
T cd03572 96 PLKGDSLNEKVREEAQELIKAIFS 119 (122)
T ss_pred cccCcchhHHHHHHHHHHHHHHhc
Confidence 3468899999999988753
No 121
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.13 E-value=1.9 Score=51.06 Aligned_cols=117 Identities=16% Similarity=0.273 Sum_probs=99.7
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-ccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KDV 1246 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~-~~~ 1246 (1400)
.+.+++.++.-+| .+.|.+|+..|..++.. .+....-+...++..+.+.+-|.+..||.....++..+.-.. +..
T Consensus 59 tlkeLl~qlkHhN---akvRkdal~glkd~l~s-~p~~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 59 TLKELLSQLKHHN---AKVRKDALNGLKDLLKS-HPAELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred cHHHHHhhhcCch---HhhhHHHHHHHHHHHHh-ChHHHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 4789999998887 58999999999999997 444444578888889999999988899998888888755444 344
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh
Q 000599 1247 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR 1288 (1400)
Q Consensus 1247 ~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~ 1288 (1400)
+.+++-.+++.+.-++-+...+|+..+..-+..++..|+|.-
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~ 176 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTF 176 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHH
Confidence 799999999999999999999999999999999999999953
No 122
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=93.07 E-value=1.4 Score=52.57 Aligned_cols=153 Identities=25% Similarity=0.306 Sum_probs=105.1
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+.+++.+.+.+|-.|..+...+..+- ....+..+...+.|.++.|...+..+|+.+- ..
T Consensus 46 ~~~~~~l~~~~~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~~----------~~ 104 (335)
T COG1413 46 DELLKLLEDEDLLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGELG----------DP 104 (335)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHccC----------Ch
Confidence 45677888889999999888743332 1245556677889999999999988666542 22
Q ss_pred hhHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCC------------hhHHHHHHHHHHHHHHh
Q 000599 82 ALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRS------------WRVREEFARTVTSAIGL 148 (1400)
Q Consensus 82 ~ilp~LleKLg-D~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Kn------------pkvr~~~l~~L~~~l~~ 148 (1400)
..+|.+++.+. |.+..||..+..+|..+-.. ..+..++. .+++++ +.+|...+..+ ..
T Consensus 105 ~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~~----~a~~~l~~-~l~~~~~~~a~~~~~~~~~~~r~~a~~~l----~~ 175 (335)
T COG1413 105 EAVPPLVELLENDENEGVRAAAARALGKLGDE----RALDPLLE-ALQDEDSGSAAAALDAALLDVRAAAAEAL----GE 175 (335)
T ss_pred hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCch----hhhHHHHH-HhccchhhhhhhhccchHHHHHHHHHHHH----HH
Confidence 34677777776 78999999999988887542 22444443 444444 13444333333 22
Q ss_pred ccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 000599 149 FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1400)
Q Consensus 149 fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~ 190 (1400)
+|. ...++.+...+.|.+..||.+|...|+.+....
T Consensus 176 ~~~------~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~ 211 (335)
T COG1413 176 LGD------PEAIPLLIELLEDEDADVRRAAASALGQLGSEN 211 (335)
T ss_pred cCC------hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch
Confidence 232 357788899999999999999999999987664
No 123
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=93.05 E-value=0.87 Score=59.97 Aligned_cols=157 Identities=20% Similarity=0.229 Sum_probs=121.0
Q ss_pred hhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc----cccHHHHHHHHH--HHhcCC-----cHHHHHH
Q 000599 1204 SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM----EDSVEIVIEKLL--HVTKDA-----VPKVSNE 1272 (1400)
Q Consensus 1204 ~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~----~~~~e~~l~~ll--~~~~D~-----~k~V~~a 1272 (1400)
..|. |..++..|..-+.+++-.+|+.+-++|.+|++.-+.+. -+++-..+.+++ +..+|= ...|+++
T Consensus 71 ~~w~--f~s~~e~L~~~~~~~~we~rhg~~i~lrei~~~h~~~~~~~~led~~~rll~v~~Ldrf~dfisd~vvapVre~ 148 (1549)
T KOG0392|consen 71 RQWP--FLSFLEELVNDLFEPQWEIRHGAAIALREILKTHGDSLSYELLEDLLIRLLCVLALDRFGDFISDNVVAPVREA 148 (1549)
T ss_pred cccc--HHHHHHHHHHHhcCchhhhhcCcchhhhhHHHHhcchhhHHHHHHHHHHHHHHHHHHHhcccccccchhhhHHH
Confidence 4565 88888888888888888899999999999999876543 233333333333 555553 2467788
Q ss_pred HHHHHHHHHhhcChhh---HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHH
Q 000599 1273 AEHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKT 1349 (1400)
Q Consensus 1273 A~~al~~i~~~~~p~~---~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRka 1349 (1400)
+..++.++.++..+.. .+.++...++...|.++.+.+..+...+. .-.+-+...++-+++-+.++++|.+-+||..
T Consensus 149 caq~L~~~l~~~~~s~~~~~~~il~q~~~q~~w~ir~Ggll~iky~~a-ir~d~l~~~~~~vl~~~i~~L~ds~ddv~~~ 227 (1549)
T KOG0392|consen 149 CAQALGAYLKHMDESLIKETLDILLQMLRQPNWEIRHGGLLGIKYNVA-IRQDLLFQLLNLVLDFVIEGLEDSDDDVRSV 227 (1549)
T ss_pred HHHHHHHHHHhhhhHhhHHHHHHHHHHHcCcchhheechHHHHHHHHH-HHHHHHHHHHHHHHHHHHhhhhhcchHHHHH
Confidence 8889999999988865 56666677777789998888888877775 5557777888899999999999999999999
Q ss_pred HHHHHHHHHHHhhh
Q 000599 1350 VVFCLVDIYIMLGK 1363 (1400)
Q Consensus 1350 Av~~lv~~~~~lge 1363 (1400)
|+..++.+-..+-+
T Consensus 228 aa~~l~~~~s~~v~ 241 (1549)
T KOG0392|consen 228 AAQFLVPAPSIQVK 241 (1549)
T ss_pred HHHHhhhhhHHHHh
Confidence 99999988876643
No 124
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=93.04 E-value=1.9 Score=44.08 Aligned_cols=108 Identities=19% Similarity=0.212 Sum_probs=79.0
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhh
Q 000599 284 REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGD 363 (1400)
Q Consensus 284 ~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~ 363 (1400)
+.+++.+.....+.||..-.+--+.| ... ... -++.+.+|.++++..|..|+..|+.++..+.+.+|..
T Consensus 3 ~~i~kATs~~l~~~dw~~~l~icD~i----~~~-~~~------~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~ 71 (133)
T smart00288 3 RLIDKATSPSLLEEDWELILEICDLI----NST-PDG------PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSK 71 (133)
T ss_pred hHHHHHcCcCCCCcCHHHHHHHHHHH----hCC-Ccc------HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHH
Confidence 34566666666789998655444433 332 111 3568888999999999999999999999999999999
Q ss_pred HHHHH--HHHHHHHHHHhchhh--HHHHHHHHHHHHHHHHhCC
Q 000599 364 FEACA--EMFIPVLFKLVVITV--LVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 364 f~~~a--~~~lp~Ll~~~~~~k--kvi~~sa~~al~~i~~~~~ 402 (1400)
|...+ +.|+..|.+.+..+. ..|++.+...+..|.....
T Consensus 72 f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~ 114 (133)
T smart00288 72 FHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWADAFK 114 (133)
T ss_pred HHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHc
Confidence 97653 448888887776643 2377788888888877653
No 125
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=93.03 E-value=0.83 Score=55.67 Aligned_cols=115 Identities=14% Similarity=0.006 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhh
Q 000599 1214 LTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1293 (1400)
Q Consensus 1214 l~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l 1293 (1400)
+..|++.|.|.+..||..+...|.+|= .....+.|+..++|.+..|+.++..++...- ....+.+
T Consensus 88 ~~~L~~~L~d~~~~vr~aaa~ALg~i~----------~~~a~~~L~~~L~~~~p~vR~aal~al~~r~-----~~~~~~L 152 (410)
T TIGR02270 88 LRSVLAVLQAGPEGLCAGIQAALGWLG----------GRQAEPWLEPLLAASEPPGRAIGLAALGAHR-----HDPGPAL 152 (410)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHhcCC----------chHHHHHHHHHhcCCChHHHHHHHHHHHhhc-----cChHHHH
Confidence 447888888888888887766665321 1224455666668888888887775554311 1245566
Q ss_pred hhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000599 1294 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCL 1354 (1400)
Q Consensus 1294 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~l 1354 (1400)
.+.+.+.++.++..|+..|+.+-. ++.+|.|..++.|.+++||.+|+.++
T Consensus 153 ~~~L~d~d~~Vra~A~raLG~l~~-----------~~a~~~L~~al~d~~~~VR~aA~~al 202 (410)
T TIGR02270 153 EAALTHEDALVRAAALRALGELPR-----------RLSESTLRLYLRDSDPEVRFAALEAG 202 (410)
T ss_pred HHHhcCCCHHHHHHHHHHHHhhcc-----------ccchHHHHHHHcCCCHHHHHHHHHHH
Confidence 677778899999999999888652 23366778889999999999999997
No 126
>smart00288 VHS Domain present in VPS-27, Hrs and STAM. Unpublished observations. Domain of unknown function.
Probab=92.98 E-value=0.56 Score=47.95 Aligned_cols=102 Identities=18% Similarity=0.282 Sum_probs=72.6
Q ss_pred CCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH--HHH
Q 000599 783 PSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME--RIL 860 (1400)
Q Consensus 783 ~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~--~ll 860 (1400)
...||.. ...+-..+.+... .-+..++.+.++|..+|..|...+|..|..++..+|..|+..+. .++
T Consensus 14 ~~~dw~~----~l~icD~i~~~~~-------~~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl 82 (133)
T smart00288 14 LEEDWEL----ILEICDLINSTPD-------GPKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFL 82 (133)
T ss_pred CCcCHHH----HHHHHHHHhCCCc-------cHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHH
Confidence 3566643 3344555655543 23457788999999999999999999999999999999966653 355
Q ss_pred HHHHHhhCCc--hhhhHHHHHHHHHHHhccCCchhhH
Q 000599 861 PHVFSRLIDP--KELVRQPCSTTLDIVSKTYSVDSLL 895 (1400)
Q Consensus 861 ~~L~~klgD~--k~~vr~~~~~~L~~~~~~~~~~~~l 895 (1400)
..|..-+.+. .+.|+.++..++..|.+.|..+--+
T Consensus 83 ~~L~~l~~~~~~~~~Vk~kil~li~~W~~~f~~~~~~ 119 (133)
T smart00288 83 NELVKLIKPKYPLPLVKKRILELIQEWADAFKNDPDL 119 (133)
T ss_pred HHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHcCCCCc
Confidence 5444433322 2339999999999999999544333
No 127
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=92.93 E-value=1.5 Score=53.48 Aligned_cols=116 Identities=16% Similarity=0.147 Sum_probs=84.2
Q ss_pred HHHHHhc-CCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhh
Q 000599 1216 AVLEVLD-DADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV 1294 (1400)
Q Consensus 1216 ~Ll~~l~-d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~ 1294 (1400)
.|+..|. |.+..++..+...|... +. ...+..|++++.|+...|+.++..++. .++.+.+...|.
T Consensus 58 ~L~~aL~~d~~~ev~~~aa~al~~~--------~~--~~~~~~L~~~L~d~~~~vr~aaa~ALg----~i~~~~a~~~L~ 123 (410)
T TIGR02270 58 LLVSALAEADEPGRVACAALALLAQ--------ED--ALDLRSVLAVLQAGPEGLCAGIQAALG----WLGGRQAEPWLE 123 (410)
T ss_pred HHHHHHhhCCChhHHHHHHHHHhcc--------CC--hHHHHHHHHHhcCCCHHHHHHHHHHHh----cCCchHHHHHHH
Confidence 7777884 55566766554444211 11 113788889999998889888888876 578889999999
Q ss_pred hhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1295 PLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1295 ~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
+.+.+++...+..++..+.. +-.+-.+.+...++|.++.||.+|+.|+=.+
T Consensus 124 ~~L~~~~p~vR~aal~al~~------------r~~~~~~~L~~~L~d~d~~Vra~A~raLG~l 174 (410)
T TIGR02270 124 PLLAASEPPGRAIGLAALGA------------HRHDPGPALEAALTHEDALVRAAALRALGEL 174 (410)
T ss_pred HHhcCCChHHHHHHHHHHHh------------hccChHHHHHHHhcCCCHHHHHHHHHHHHhh
Confidence 99988887777777765555 2122356778888999999999999997443
No 128
>cd03565 VHS_Tom1 VHS domain family, Tom1 subfamily; The VHS domain is an essential part of Tom1 (Target of myb1 - retroviral oncogene) protein. The VHS domain has a superhelical structure similar to the structure of the ARM repeats and is present at the very N-termini of proteins. It is a right-handed superhelix of eight alpha helices. The VHS domain has been found in a number of proteins, some of which have been implicated in intracellular trafficking and sorting. The VHS domain of the Tom1 protein is essential for the negative regulation of Interleukin-1 and Tumor Necrosis Factor-induced signaling pathways.
Probab=92.88 E-value=2.7 Score=43.46 Aligned_cols=108 Identities=19% Similarity=0.211 Sum_probs=76.4
Q ss_pred HHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhc-ccchHHHHHHHHHHHHHHHHhhh
Q 000599 284 REFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS-DRRSSIVKQACHLLCFLSKELLG 362 (1400)
Q Consensus 284 ~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~-Dlrs~Vv~~Ac~~l~~La~~Lg~ 362 (1400)
..+++.++....+.||.--++--+.|+ .. ... -++.+.+|++++. ..|.+|+..|+.++..+.+.+|.
T Consensus 4 ~~IekATse~l~~~dw~~ileicD~In----~~-~~~------~k~a~ralkkRl~~~~n~~v~l~aL~LLe~~vkNCG~ 72 (141)
T cd03565 4 QLIEKATDGSLQSEDWGLNMEICDIIN----ET-EDG------PKDAVRALKKRLNGNKNHKEVMLTLTVLETCVKNCGH 72 (141)
T ss_pred HHHHHHcCcCCCCcCHHHHHHHHHHHh----CC-CCc------HHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHccH
Confidence 346677776677889996655544443 22 122 3568888999997 46889999999999999999999
Q ss_pred hHHHHH--HHHHHH-HHHHhchh---hHHHHHHHHHHHHHHHHhCC
Q 000599 363 DFEACA--EMFIPV-LFKLVVIT---VLVIAESSDNCIKTMLRNCK 402 (1400)
Q Consensus 363 ~f~~~a--~~~lp~-Ll~~~~~~---kkvi~~sa~~al~~i~~~~~ 402 (1400)
.|...+ +.|+.. |++.+..+ ...|.+.....|..|.....
T Consensus 73 ~fh~eiask~Fl~e~L~~~i~~~~~~~~~Vk~kil~li~~W~~~f~ 118 (141)
T cd03565 73 RFHVLVAKKDFIKDVLVKLINPKNNPPTIVQEKVLALIQAWADAFR 118 (141)
T ss_pred HHHHHHHHHHhhhHHHHHHHcccCCCcHHHHHHHHHHHHHHHHHhC
Confidence 998754 458886 77777532 23566666677777766553
No 129
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.69 E-value=0.9 Score=56.14 Aligned_cols=174 Identities=20% Similarity=0.201 Sum_probs=115.2
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC-----ChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-
Q 000599 1170 PQILHLMCNGNDGSPTSKHGALQQLIKASVAN-----DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ- 1243 (1400)
Q Consensus 1170 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~-----~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~- 1243 (1400)
....+-|+|..+ ..|.+|++-+.-.-+-. ....-.+..+..+..+.+.+.|.+-+||..|...|..|-+.-
T Consensus 237 ~~A~~~lsD~~e---~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe 313 (823)
T KOG2259|consen 237 SRAVKHLSDDYE---DVRKAAVQLVSVWGNRCPAPLERESEEEKLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE 313 (823)
T ss_pred HHHHHHhcchHH---HHHHHHHHHHHHHHhcCCCcccchhhhhhhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH
Confidence 445556666653 68888877654433222 111122356667777888888877777766655544322110
Q ss_pred ------------c------------------------ccc---------cccHHHHHH-----HHHHHhcCCcHHHHHHH
Q 000599 1244 ------------K------------------------DVM---------EDSVEIVIE-----KLLHVTKDAVPKVSNEA 1273 (1400)
Q Consensus 1244 ------------~------------------------~~~---------~~~~e~~l~-----~ll~~~~D~~k~V~~aA 1273 (1400)
+ .+| +.-.+.++| .+++.+.|-.-+|++||
T Consensus 314 e~i~QTLdKKlms~lRRkr~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDEf~EVR~AA 393 (823)
T KOG2259|consen 314 EIIQQTLDKKLMSRLRRKRTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDEFYEVRRAA 393 (823)
T ss_pred HHHHHHHHHHHhhhhhhhhhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHHHHHHHHHH
Confidence 0 001 001112222 24556668888999999
Q ss_pred HHHHHHHHhhcCh--hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHH
Q 000599 1274 EHCLTVVLSQYDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVV 1351 (1400)
Q Consensus 1274 ~~al~~i~~~~~p--~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv 1351 (1400)
.+.+-.++..-|- .+++.+|...++++-.-+|+-|+..|+.+..++. .=.+.++.+.+++.|+..+||.+.+
T Consensus 394 V~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l~------i~eeql~~il~~L~D~s~dvRe~l~ 467 (823)
T KOG2259|consen 394 VASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHLA------IREEQLRQILESLEDRSVDVREALR 467 (823)
T ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHhe------ecHHHHHHHHHHHHhcCHHHHHHHH
Confidence 9999988876443 5799999999999888899999999999997743 2234578889999999999999876
Q ss_pred H
Q 000599 1352 F 1352 (1400)
Q Consensus 1352 ~ 1352 (1400)
.
T Consensus 468 e 468 (823)
T KOG2259|consen 468 E 468 (823)
T ss_pred H
Confidence 4
No 130
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.58 E-value=29 Score=44.53 Aligned_cols=169 Identities=14% Similarity=0.166 Sum_probs=107.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhcc-CCcchHHHHHHHHHHHHHHhhhhhHhh
Q 000599 2 EEALELARA-KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKD-NNFKVSQGALQSLASAAVLSGEHFKLH 79 (1400)
Q Consensus 2 e~~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~D-sN~~V~~~aL~~l~~l~~~l~~~~~~~ 79 (1400)
+.+++++.+ +-...|.+|+-.|+.+..++....-...+..+++.|. +| .+.-+...+|+++..+..+= ++
T Consensus 25 ~kLcDRvessTL~eDRR~A~rgLKa~srkYR~~Vga~Gmk~li~vL~---~D~~D~E~ik~~LdTl~il~~~d--d~--- 96 (970)
T KOG0946|consen 25 EKLCDRVESSTLLEDRRDAVRGLKAFSRKYREEVGAQGMKPLIQVLQ---RDYMDPEIIKYALDTLLILTSHD--DS--- 96 (970)
T ss_pred HHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHh---hccCCHHHHHHHHHHHHHHHhcC--cc---
Confidence 567777775 5688999999999998877643221223445555553 22 45567777788777766431 10
Q ss_pred hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchh---h
Q 000599 80 FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT---L 156 (1400)
Q Consensus 80 ~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~---l 156 (1400)
|-+ ..|++ ...+-....-..|+. -+..+..++. .+.+++..||--.+..|...+..-|...-+ .
T Consensus 97 -----~~v---~dds~-qsdd~g~~iae~fik---~qd~I~lll~-~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~ 163 (970)
T KOG0946|consen 97 -----PEV---MDDST-QSDDLGLWIAEQFIK---NQDNITLLLQ-SLEEFDFHVRLYAIQLLSALLSCRPTELQDALLV 163 (970)
T ss_pred -----hhh---cccch-hhhHHHHHHHHHHHc---CchhHHHHHH-HHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHH
Confidence 100 12333 112222222222222 2344455555 789999999999999999888877764322 1
Q ss_pred hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 157 QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 157 ~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
...-|..++.+|.|+-.-||+.|+-+|.++-+-.+
T Consensus 164 ~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~ 198 (970)
T KOG0946|consen 164 SPMGISKLMDLLRDSREPIRNEAILLLSELVKDNS 198 (970)
T ss_pred CchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCc
Confidence 13467788999999999999999999999987655
No 131
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=92.51 E-value=1.1 Score=47.44 Aligned_cols=118 Identities=19% Similarity=0.264 Sum_probs=88.2
Q ss_pred cccHHHHHHHHHHHhc------------------CCcHHHHHHHHHHHHHHHhhcC----hhhHHHhhhhhccCCchhhH
Q 000599 1248 EDSVEIVIEKLLHVTK------------------DAVPKVSNEAEHCLTVVLSQYD----PFRCLSVIVPLLVTEDEKTL 1305 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~------------------D~~k~V~~aA~~al~~i~~~~~----p~~~l~~l~~~l~s~~~~~~ 1305 (1400)
.+.+..+||.|+.-.. |-+-+++.+|=+|+-+++..+. ...++..+..++.. +.-++
T Consensus 4 ~~~L~~llP~ly~et~v~~elir~V~mGPFKh~vDDGLelRK~ayE~lytlLd~~~~~~~~~~~~~~v~~GL~D-~~DIk 82 (169)
T PF08623_consen 4 RPHLDQLLPNLYAETKVKPELIREVDMGPFKHKVDDGLELRKAAYECLYTLLDTCLSRIDISEFLDRVEAGLKD-EHDIK 82 (169)
T ss_dssp TTTHHHHHHHHHHTTS--STTEEEEEETTCEEEEEGGGHHHHHHHHHHHHHHHSTCSSS-HHHHHHHHHHTTSS--HHHH
T ss_pred HHHHHHHHHHHHHHhccCHHHheeeecCCceeeecCcHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhhcCC-cHHHH
Confidence 3556667777775332 6778999999999999987633 34577777788866 78899
Q ss_pred hHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhc------------CCCHHHHHHHHHHHHHHHHHhhh-hcch
Q 000599 1306 VTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFG------------NQSADVRKTVVFCLVDIYIMLGK-AFLP 1367 (1400)
Q Consensus 1306 ~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~------------d~~seVRkaAv~~lv~~~~~lge-~~~p 1367 (1400)
+.|.-|+.+++ .+.++.+..+|..+++.+..-+. +...|.-+++..|+.++..++++ +.-|
T Consensus 83 ~L~~~~l~kl~-~~~p~~v~~~Ld~l~~~l~~~L~~k~k~~AvkQE~Ek~~E~~rs~lr~~~~l~~~i~~~~~~~ 156 (169)
T PF08623_consen 83 MLCHLMLSKLA-QLAPEEVLQRLDSLVEPLRKTLSKKLKENAVKQEIEKQQELIRSVLRAVKALNSKIPGAESSP 156 (169)
T ss_dssp HHHHHHHHHHH-HS-HHHHHHCCTTTHHHHHHHHH----TTS-HHHHHHHHHHHHHHHHHHHHH-HSSTS-SSSH
T ss_pred HHHHHHHHHHH-HhCHHHHHHHHHHHHHHHHHHhhccCCCCcccccHHHHHHHHHHHHHHHHHHHHhCcccccCH
Confidence 99999999999 56678888889999998888773 12346788899999998777765 4444
No 132
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=92.45 E-value=4.3 Score=46.54 Aligned_cols=188 Identities=17% Similarity=0.202 Sum_probs=120.2
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Q 000599 1185 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDA--DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 1262 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~--~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~ 1262 (1400)
.--..++..+..+++...+.. +....++..+..-..-. -...|..++.+|..++.+....+...-..++..+++.+
T Consensus 55 ~~~~~~l~gl~~L~~~~~~~~--~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~ 132 (262)
T PF14500_consen 55 ACVQPALKGLLALVKMKNFSP--ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLI 132 (262)
T ss_pred hhHHHHHHHHHHHHhCcCCCh--hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHh
Confidence 334445777777775554433 34667777777655432 34489999999999999865555545555666666655
Q ss_pred -cCCcHHHHHHHHHHHHHHHhhcChh----hHHHhhhhhcc-----CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhH
Q 000599 1263 -KDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLV-----TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1332 (1400)
Q Consensus 1263 -~D~~k~V~~aA~~al~~i~~~~~p~----~~l~~l~~~l~-----s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~li 1332 (1400)
|.+.+.-..-+=..++.++..++.. .++.++.-++- ..+.+.++..-++-..|-+-+..... ..|..+
T Consensus 133 ~gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~--fa~~~~ 210 (262)
T PF14500_consen 133 DGEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPL--FAPFAF 210 (262)
T ss_pred ccCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHh--hHHHHH
Confidence 2333344445556666777776653 35555553331 23333333334443444433332221 346789
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHH
Q 000599 1333 PALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQ 1376 (1400)
Q Consensus 1333 P~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~ 1376 (1400)
|.|.+-+..+.+.|+.-+..+|.+....+|. .+.||+..+=.+-
T Consensus 211 p~LleKL~s~~~~~K~D~L~tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 211 PLLLEKLDSTSPSVKLDSLQTLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999996 7999998776553
No 133
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=92.44 E-value=2.4 Score=53.97 Aligned_cols=173 Identities=13% Similarity=0.207 Sum_probs=115.3
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHH-HHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK-YFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKD 1245 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~-~f~~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~~ 1245 (1400)
.+.+||+-+....| .-++.+||.+|-+++.-++-+...- -.+.+...|..+|.+ .|..+.-.|++.|.+||..++.
T Consensus 168 k~kkLL~gL~~~~D--es~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~ 245 (1051)
T KOG0168|consen 168 KAKKLLQGLQAESD--ESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPR 245 (1051)
T ss_pred HHHHHHHhccccCC--hHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccc
Confidence 57888888877754 4688899999998886665433221 157788889999988 4677999999999999999986
Q ss_pred c----cccc-HHHHHHHHHH-HhcCCc---------------H--------------------HHHHHHHHHHHHHHhhc
Q 000599 1246 V----MEDS-VEIVIEKLLH-VTKDAV---------------P--------------------KVSNEAEHCLTVVLSQY 1284 (1400)
Q Consensus 1246 ~----~~~~-~e~~l~~ll~-~~~D~~---------------k--------------------~V~~aA~~al~~i~~~~ 1284 (1400)
. ++.. +-.++.+|+. -|-|-+ + .++|.|...+..+|..+
T Consensus 246 S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi 325 (1051)
T KOG0168|consen 246 SSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI 325 (1051)
T ss_pred hhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 5 3322 3334444432 111211 1 23355666666677777
Q ss_pred Chhh------HHHhhhhhccCCchhhHhHHHHHHHHHHhhcC--HHHHHh-hhhhhHHHHHHHhcCC
Q 000599 1285 DPFR------CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS--QEELMA-QLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1285 ~p~~------~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~--~~~l~~-~l~~liP~l~~~~~d~ 1342 (1400)
+|+. .+|+|+++|+-.+-+.-..++-+++++++... ++-|+. +-+++|..+.+.+.-+
T Consensus 326 ~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt 392 (1051)
T KOG0168|consen 326 RSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVT 392 (1051)
T ss_pred CCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcC
Confidence 7753 88999999976655555556677888887764 344444 3357777777766655
No 134
>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional
Probab=92.37 E-value=4.6 Score=57.44 Aligned_cols=196 Identities=13% Similarity=0.204 Sum_probs=125.9
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCC--hhhHHHHHH-HHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhcc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAND--HSIWTKYFN-QILTAVLEVLDD-ADSSVREVALSLINEMLKNQK 1244 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~--~~~~~~~f~-~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~ 1244 (1400)
+.+.+.+...++. .+.+.-|++.|+++....- .+...-+|. .+|+.|..++.. .+..||+..|+.+..|+...+
T Consensus 1138 l~~hf~~vg~~~n--~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~im~~s~~~eVrE~ILeCv~qmI~s~~ 1215 (1780)
T PLN03076 1138 LSDFFVTIGCSEN--LSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVIVMRKSNAVEIRELIIRCVSQMVLSRV 1215 (1780)
T ss_pred HHHHHHHhcCCcc--hhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 3444444433322 2456667777766544321 122222343 788888888876 455699999999999999888
Q ss_pred ccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh-cC------hh---hHHHhhhhhccCC-chhhHhHHHHHHH
Q 000599 1245 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ-YD------PF---RCLSVIVPLLVTE-DEKTLVTCINCLT 1313 (1400)
Q Consensus 1245 ~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~-~~------p~---~~l~~l~~~l~s~-~~~~~~~alk~l~ 1313 (1400)
..+...-..++.-+--+..|.++.+++.|=+++..|+.. ++ +. .|+..+..+...+ +-.+-+.|+++|.
T Consensus 1216 ~nIkSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~~F~DlV~cL~~Fa~q~~~~nISL~AI~lL~ 1295 (1780)
T PLN03076 1216 NNVKSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETTTFTDCVNCLIAFTNSRFNKDISLNAIAFLR 1295 (1780)
T ss_pred hhhhcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchhHHHHHHHHHHHHHhCcCcccccHHHHHHHH
Confidence 777665555555555566788899999999999888754 22 11 4777777666544 3446677777776
Q ss_pred HHHhhcCHH-----------------------------------H-HHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1314 KLVGRLSQE-----------------------------------E-LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1314 ~lv~~~~~~-----------------------------------~-l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
.+...+-.. . ..-.+| ++-+|.+.+.|...|||+.|+.+|-.+
T Consensus 1296 ~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~lW~p-LL~~Ls~l~~D~RlEVR~~ALqtLF~i 1374 (1780)
T PLN03076 1296 FCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHLYFWFP-LLAGLSELSFDPRPEIRKSALQVLFDT 1374 (1780)
T ss_pred HHHHHHHhccccccccccccccccccccccccccccccccccchhHHHHHHH-HHHHHHHHhcCCcHHHHHHHHHHHHHH
Confidence 553222100 0 011222 334666778899999999999999999
Q ss_pred HHHhhhhcch
Q 000599 1358 YIMLGKAFLP 1367 (1400)
Q Consensus 1358 ~~~lge~~~p 1367 (1400)
-...|..+-|
T Consensus 1375 L~~yG~~Fs~ 1384 (1780)
T PLN03076 1375 LRNHGHLFSL 1384 (1780)
T ss_pred HHHhhccCCH
Confidence 8888876554
No 135
>KOG4653 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.31 E-value=4.6 Score=51.73 Aligned_cols=185 Identities=19% Similarity=0.244 Sum_probs=120.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNA 82 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ 82 (1400)
+.+.-+.++..-.|..|+..|..++++-.+. +-..-..+++.....++|.+.=|...|+..+..+++. |=..
T Consensus 731 eai~sl~d~qvpik~~gL~~l~~l~e~r~~~-~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~ 802 (982)
T KOG4653|consen 731 EAISSLHDDQVPIKGYGLQMLRHLIEKRKKA-TLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPED 802 (982)
T ss_pred HHHHHhcCCcccchHHHHHHHHHHHHhcchh-hhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchh
Confidence 4566677788889999999999999864222 1222345667777889999999999999988887754 6677
Q ss_pred hHHHHHHHhCCCChh----HHHHHHHHHHHHHHHhch------hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHh--cc
Q 000599 83 LVPAVVERLGDAKQP----VRDAARRLLLTLMEVSSP------TIIVERAGSYAWTHRSWRVREEFARTVTSAIGL--FS 150 (1400)
Q Consensus 83 ilp~LleKLgD~K~~----vre~a~~~L~~l~e~~~p------~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~--fg 150 (1400)
++|-+.|-....|.+ .|=.+.+++..+++.-++ ..++...+. |.....-..|...+..+..+... |+
T Consensus 803 il~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~~~Li~tfl~-gvrepd~~~RaSS~a~lg~Lcq~~a~~ 881 (982)
T KOG4653|consen 803 ILPDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYKAVLINTFLS-GVREPDHEFRASSLANLGQLCQLLAFQ 881 (982)
T ss_pred hHHHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHHHHHHHHHHH-hcCCchHHHHHhHHHHHHHHHHHHhhh
Confidence 889998854322221 233455666666654333 122333332 44433344477777776665433 33
Q ss_pred CcchhhhhhhHHHHHHh-hCCCChhHHHHHHHHHHHHHhhhChhHHHhh
Q 000599 151 ATELTLQRAILPPILQM-LNDPNPGVREAAILCIEEMYTYAGPQFRDEL 198 (1400)
Q Consensus 151 ~~~l~l~k~~lp~l~~~-L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L 198 (1400)
... .+ -.++.-++.. -.|..+-||.+|..++..+..-+|.++.+.+
T Consensus 882 vsd-~~-~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpil 928 (982)
T KOG4653|consen 882 VSD-FF-HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPIL 928 (982)
T ss_pred hhH-HH-HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHH
Confidence 332 12 2333444333 3489999999999999999999998776655
No 136
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=92.27 E-value=3 Score=44.35 Aligned_cols=101 Identities=20% Similarity=0.227 Sum_probs=78.9
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChH-HHHHHHHHHHHHHhhcccc-------ccccHHHHH
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSS-VREVALSLINEMLKNQKDV-------MEDSVEIVI 1255 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~-vR~~aL~~L~~l~~~~~~~-------~~~~~e~~l 1255 (1400)
++.|-.++.-+...+..++.+.+.++....++.|+..|...++. +.+.|+.+|..|+...... ..+.+..++
T Consensus 39 ~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p~l~Rei~tp~l~~~i 118 (165)
T PF08167_consen 39 AYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKPTLTREIATPNLPKFI 118 (165)
T ss_pred hhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCchHHHHhhccHHHHH
Confidence 57888888888888888888888889999999999999885544 8999999999999876432 345666677
Q ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh
Q 000599 1256 EKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP 1286 (1400)
Q Consensus 1256 ~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p 1286 (1400)
..+++...+ ..+...+.+++..++.++|.
T Consensus 119 ~~ll~l~~~--~~~~~~~l~~L~~ll~~~pt 147 (165)
T PF08167_consen 119 QSLLQLLQD--SSCPETALDALATLLPHHPT 147 (165)
T ss_pred HHHHHHHhc--cccHHHHHHHHHHHHHHCCc
Confidence 777777776 46667777888887776443
No 137
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.13 E-value=2.2 Score=57.75 Aligned_cols=183 Identities=17% Similarity=0.175 Sum_probs=119.6
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCC------------hHHH------HHHHHHHHHHHhhcc--
Q 000599 1185 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD------------SSVR------EVALSLINEMLKNQK-- 1244 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~------------~~vR------~~aL~~L~~l~~~~~-- 1244 (1400)
.+|.-+...+...+.+.--..+..||+-++......|+-.| ...| ..++..+..++..-.
T Consensus 1409 ~~Rli~fy~f~~~l~esl~si~~pYf~~~l~~~~~~L~k~n~s~~~~~~~~~~~~~r~~~~~~~Lvl~cl~~~~~~Dt~~ 1488 (1621)
T KOG1837|consen 1409 LERLISFYHFADYLQESLKSIVTPYFGYLLEPRVILLKKINASKHRWFWLLPVNQSRKPLLLGTLVLNCLKDLFLFDTIE 1488 (1621)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhhhhhhhhcccccchhHHHHHHHHHHHHHHHhhhhhH
Confidence 46777777777777765444455678877766555543211 1122 244455555544322
Q ss_pred -----ccccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---CCchhhHhHHHHHHHH
Q 000599 1245 -----DVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTK 1314 (1400)
Q Consensus 1245 -----~~~~~~~e~~l~~ll~~~~--D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~ 1314 (1400)
.+|.--..+++..+++... -..+.|......|+-.+..+ .+....|++..++. +..-..|..||..+..
T Consensus 1489 ~f~t~~r~~~~~~p~v~ql~n~~~e~~~~~~v~~~li~~i~~~~~a-~~~d~~pl~~k~l~~trss~~~~r~~ai~~~~~ 1567 (1621)
T KOG1837|consen 1489 SFVTKSRFELLSYPLVSQLVNVLLEFYASDIVSKLLIAEIASDSVA-DKDDLKPLNQKILKKTRSSSRKARYLAIIQVKL 1567 (1621)
T ss_pred HHHhhhhhhhhhhhhHHHHHHhhccchhhhHHHHHHHHHHHhhccC-ChhhhHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence 1111112234444444222 22334555566666555433 44447777777774 4455789999999999
Q ss_pred HHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhh
Q 000599 1315 LVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYL 1369 (1400)
Q Consensus 1315 lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l 1369 (1400)
+++.++ +....+||.++|.|.+-|.|.+-+|--.++...=-+-.++||-++.|+
T Consensus 1568 l~~~lg-e~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y~ 1621 (1621)
T KOG1837|consen 1568 LYTKLG-ENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSYL 1621 (1621)
T ss_pred HHHHhc-chhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhcC
Confidence 999999 788899999999999999999999999999977777788999777664
No 138
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.13 E-value=44 Score=42.74 Aligned_cols=82 Identities=22% Similarity=0.261 Sum_probs=60.8
Q ss_pred HHHHHHHHHHHh---ch-hHHHHHHh------hhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCC
Q 000599 102 ARRLLLTLMEVS---SP-TIIVERAG------SYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP 171 (1400)
Q Consensus 102 a~~~L~~l~e~~---~p-~~V~e~l~------~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~ 171 (1400)
..++|.-+||.+ .. ..+++.++ ..-++|.|--+|-.+|.+|... +.-.+..+++|.+..||+|+
T Consensus 73 lKKLly~ywE~vPKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckL------kE~ELlepl~p~IracleHr 146 (948)
T KOG1058|consen 73 LKKLLYYYWELVPKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKL------KEPELLEPLMPSIRACLEHR 146 (948)
T ss_pred HHHHHHHHHHHccccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhc------CcHHHhhhhHHHHHHHHhCc
Confidence 456777788853 11 23333332 1247899999999999988542 11223479999999999999
Q ss_pred ChhHHHHHHHHHHHHHhh
Q 000599 172 NPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 172 n~~VR~aA~~~l~~l~~~ 189 (1400)
+.-||..|+-++.+||+.
T Consensus 147 hsYVRrNAilaifsIyk~ 164 (948)
T KOG1058|consen 147 HSYVRRNAILAIFSIYKN 164 (948)
T ss_pred chhhhhhhheeehhHHhh
Confidence 999999999999999987
No 139
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.03 E-value=3.8 Score=55.41 Aligned_cols=149 Identities=14% Similarity=0.214 Sum_probs=112.0
Q ss_pred hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhc
Q 000599 1205 IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY 1284 (1400)
Q Consensus 1205 ~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~ 1284 (1400)
.+.+.|+..|..++..++.....+|..||..|..|...-+.-. .-..+...|--.+.|++.-|++||-+.+...+-.
T Consensus 809 ~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL--~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~- 885 (1692)
T KOG1020|consen 809 SFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVL--SRPDVQEAVHGRLNDSSASVREAALDLVGRFVLS- 885 (1692)
T ss_pred HHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhh--cCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhc-
Confidence 3446799999999999997777799999999999998533211 2234566677788899999999999988766644
Q ss_pred Chhh---HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000599 1285 DPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1359 (1400)
Q Consensus 1285 ~p~~---~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~ 1359 (1400)
.|+. ....|...+.+...-+|-.+||.+..+-+..+.=. ..+++.--+..-++|.+..|.|-+...+..+|.
T Consensus 886 ~~e~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~---~i~~~cakmlrRv~DEEg~I~kLv~etf~klWF 960 (1692)
T KOG1020|consen 886 IPELIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFS---KIVDMCAKMLRRVNDEEGNIKKLVRETFLKLWF 960 (1692)
T ss_pred cHHHHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChh---hHHHHHHHHHHHhccchhHHHHHHHHHHHHHhc
Confidence 5544 34444455555567778888999999998777311 345556666788899999999999999999994
No 140
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.00 E-value=11 Score=47.41 Aligned_cols=108 Identities=20% Similarity=0.233 Sum_probs=82.7
Q ss_pred HHHHHHHHhhhccCCcchHHHHHHHHHHHHHH--hhhhhHhhhhhhHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhchh
Q 000599 40 TSLVDCCLDLLKDNNFKVSQGALQSLASAAVL--SGEHFKLHFNALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSPT 116 (1400)
Q Consensus 40 ~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~--l~~~~~~~~~~ilp~LleKLg-D~K~~vre~a~~~L~~l~e~~~p~ 116 (1400)
..-+..|..++.+...++...|||-++.++.. .-+.++.|. ..++.-|. +...+||..|.++|-+|+......
T Consensus 328 ~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~----d~Ii~sLkterDvSirrravDLLY~mcD~~Nak 403 (938)
T KOG1077|consen 328 SRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQ----DTIINSLKTERDVSIRRRAVDLLYAMCDVSNAK 403 (938)
T ss_pred HHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHH----HHHHHHhccccchHHHHHHHHHHHHHhchhhHH
Confidence 34445556788888888999999999888743 233455554 44555565 666779999999999999988888
Q ss_pred HHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCc
Q 000599 117 IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1400)
Q Consensus 117 ~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~ 152 (1400)
.+++.++. .+.+-.+-+|++...-+.-.-+.|...
T Consensus 404 ~IV~elLq-YL~tAd~sireeivlKvAILaEKyAtD 438 (938)
T KOG1077|consen 404 QIVAELLQ-YLETADYSIREEIVLKVAILAEKYATD 438 (938)
T ss_pred HHHHHHHH-HHhhcchHHHHHHHHHHHHHHHHhcCC
Confidence 99999997 788899999999887776666777664
No 141
>cd00197 VHS_ENTH_ANTH VHS, ENTH and ANTH domain superfamily; composed of proteins containing a VHS, ENTH or ANTH domain. The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It is located at the N-termini of proteins involved in intracellular membrane trafficking. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. VHS, ENTH and ANTH domains are structurally similar and are composed of a superhelix of eight alpha helices. ENTH adnd ANTH (E/ANTH) domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membra
Probab=91.86 E-value=1.3 Score=43.87 Aligned_cols=103 Identities=20% Similarity=0.275 Sum_probs=70.7
Q ss_pred HHHHHHhcCC-CHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 2 EEALELARAK-DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~l~~l~s~-~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
|..++...+. .|..-...+.+|...+... ......+++.|.+.+.+.|+.++..||..|..++++++..|..++
T Consensus 2 ~~~v~~AT~~~~~~p~~~~i~~i~d~~~~~-----~~~~~~~~~~l~kRl~~~~~~~~lkaL~lLe~lvkN~g~~f~~~i 76 (115)
T cd00197 2 EKTVEKATSNENMGPDWPLIMEICDLINET-----NVGPKEAVDAIKKRINNKNPHVVLKALTLLEYCVKNCGERFHQEV 76 (115)
T ss_pred hHHHHHHcCCCCCCCCHHHHHHHHHHHHCC-----CccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHccHHHHHHH
Confidence 4455555553 4444446777777777542 123457888898999999999999999999999999998887665
Q ss_pred hh--hHHHHHH----H-hC-CCChhHHHHHHHHHHHH
Q 000599 81 NA--LVPAVVE----R-LG-DAKQPVRDAARRLLLTL 109 (1400)
Q Consensus 81 ~~--ilp~Lle----K-Lg-D~K~~vre~a~~~L~~l 109 (1400)
.. ++--++. + .| +....||+.+.+++..+
T Consensus 77 ~~~~~~~~l~~~~~~~~~~~~~~~~Vr~k~~~l~~~w 113 (115)
T cd00197 77 ASNDFAVELLKFDKSKLLGDDVSTNVREKAIELVQLW 113 (115)
T ss_pred HHhHHHHHHHHhhccccccCCCChHHHHHHHHHHHHH
Confidence 43 2222321 1 22 44667888888877665
No 142
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=91.78 E-value=3.5 Score=49.34 Aligned_cols=135 Identities=15% Similarity=0.275 Sum_probs=97.3
Q ss_pred hHHHHHHHHHHHHHhcCC----hhhHHHHHHHH-----HHHHHHHhcCCChHHHHHHHHHHHHHHhhc-----------c
Q 000599 1185 TSKHGALQQLIKASVAND----HSIWTKYFNQI-----LTAVLEVLDDADSSVREVALSLINEMLKNQ-----------K 1244 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~----~~~~~~~f~~l-----l~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~-----------~ 1244 (1400)
+.|..||.-+...++.-. +.+|...|.+- ...++-.|+|+++..|..||.++..|+.-- +
T Consensus 11 kvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls~a~~~~~ 90 (728)
T KOG4535|consen 11 KVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLSVAEDTSD 90 (728)
T ss_pred HHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHHHHhccCC
Confidence 567777777766665432 23344322211 123455789999999999999999887531 2
Q ss_pred ccccccHHHHHHHHHHHhc--------CCcHHHHHHHHHHHHHHHhhcChhh--------HHHhhhhhccCCchhhHhHH
Q 000599 1245 DVMEDSVEIVIEKLLHVTK--------DAVPKVSNEAEHCLTVVLSQYDPFR--------CLSVIVPLLVTEDEKTLVTC 1308 (1400)
Q Consensus 1245 ~~~~~~~e~~l~~ll~~~~--------D~~k~V~~aA~~al~~i~~~~~p~~--------~l~~l~~~l~s~~~~~~~~a 1308 (1400)
+.|.+|...+-..++++|. .....|++....|+..++...|..+ +.+-+.++|++++.++++.+
T Consensus 91 ~~ftpf~v~~a~si~~~~r~l~~~l~~e~~~~~~tq~~kcla~lv~~~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~ 170 (728)
T KOG4535|consen 91 HAFTPFSVMIACSIRELHRCLLLALVAESSSQTVTQIIKCLANLVSNAPYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSS 170 (728)
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHhhcCCCChhhHH
Confidence 4589998777766666554 5667899999999999999988764 55666788899999999999
Q ss_pred HHHHHHHHhhc
Q 000599 1309 INCLTKLVGRL 1319 (1400)
Q Consensus 1309 lk~l~~lv~~~ 1319 (1400)
+-+|+.++...
T Consensus 171 l~~~~~~v~t~ 181 (728)
T KOG4535|consen 171 LTLLGAIVSTH 181 (728)
T ss_pred HHHHHHHHhcC
Confidence 99999888554
No 143
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=91.78 E-value=4.5 Score=46.98 Aligned_cols=142 Identities=15% Similarity=0.232 Sum_probs=102.6
Q ss_pred CChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc----cccc--HHHHHHHHHHHhc--------CCc
Q 000599 1201 NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV----MEDS--VEIVIEKLLHVTK--------DAV 1266 (1400)
Q Consensus 1201 ~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~----~~~~--~e~~l~~ll~~~~--------D~~ 1266 (1400)
-+...+.+|+..++..++..++|.++.+|..+|.+|.+++...+.. +..+ ...+-..+..++- +..
T Consensus 108 ~~~~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s 187 (282)
T PF10521_consen 108 LDRPWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDES 187 (282)
T ss_pred CCcchHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhh
Confidence 3455566899999999999999999999999999999999977533 3332 4444444554444 555
Q ss_pred HHHHHHHHHHHHHHHhhc--Ch-----hhHHHhhhh-hcc----CCc---hhhHhHHHHHHHHHHhhcCHHHHHhhhhhh
Q 000599 1267 PKVSNEAEHCLTVVLSQY--DP-----FRCLSVIVP-LLV----TED---EKTLVTCINCLTKLVGRLSQEELMAQLPSF 1331 (1400)
Q Consensus 1267 k~V~~aA~~al~~i~~~~--~p-----~~~l~~l~~-~l~----s~~---~~~~~~alk~l~~lv~~~~~~~l~~~l~~l 1331 (1400)
-.+...|-.|+..++... ++ ..+.++|.. ++. -.+ .+.....++-+..+++.+|. ....||..+
T Consensus 188 ~~Ll~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi-~~~~hL~ri 266 (282)
T PF10521_consen 188 LELLQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGI-SSVKHLQRI 266 (282)
T ss_pred HHHHHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence 778889999999887652 11 124444444 222 223 55677788999999999884 566899999
Q ss_pred HHHHHHHhcCCC
Q 000599 1332 LPALFEAFGNQS 1343 (1400)
Q Consensus 1332 iP~l~~~~~d~~ 1343 (1400)
+|.|.+-+.|..
T Consensus 267 i~~l~~~l~npf 278 (282)
T PF10521_consen 267 IPVLSQILENPF 278 (282)
T ss_pred HHHHHHHhcCCC
Confidence 999999887764
No 144
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=91.73 E-value=2 Score=50.42 Aligned_cols=127 Identities=11% Similarity=0.088 Sum_probs=91.4
Q ss_pred HHHHHHHHHHHhhhhhHh--hhhhhHHHHHHH-hCCCChhHHHHHHHHHHHHHHHh--chhHHHHHHhhhhhhcCChhHH
Q 000599 61 ALQSLASAAVLSGEHFKL--HFNALVPAVVER-LGDAKQPVRDAARRLLLTLMEVS--SPTIIVERAGSYAWTHRSWRVR 135 (1400)
Q Consensus 61 aL~~l~~l~~~l~~~~~~--~~~~ilp~LleK-LgD~K~~vre~a~~~L~~l~e~~--~p~~V~e~l~~~~~~~Knpkvr 135 (1400)
.|.++..+.++....+.. .+..++..||-. +......||+.+.+||-.++-.. .....+.-+.. .++.....|+
T Consensus 3 cL~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~~l~l~~~-~~~~~~~~v~ 81 (298)
T PF12719_consen 3 CLSITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKEHLPLFLQ-ALQKDDEEVK 81 (298)
T ss_pred HHHHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHHHHHHHHH-HHHhCCHHHH
Confidence 456666676665544544 344777777755 45566679999999998887321 11223333444 4555689999
Q ss_pred HHHHHHHHHHHHhccCcchhhh---------hhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 136 EEFARTVTSAIGLFSATELTLQ---------RAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 136 ~~~l~~L~~~l~~fg~~~l~l~---------k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
..++..+...+..||...++.. ..++..+.+.+.+.+++||..|.+.++.|+-
T Consensus 82 ~~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 82 ITALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HHHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 9999999999999997654321 3588889999999999999999999999874
No 145
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=91.70 E-value=9 Score=48.63 Aligned_cols=136 Identities=17% Similarity=0.201 Sum_probs=93.4
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh----HHHhhhhhc-cCCchhhHhHHHHHHHHHHhhcCH
Q 000599 1247 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR----CLSVIVPLL-VTEDEKTLVTCINCLTKLVGRLSQ 1321 (1400)
Q Consensus 1247 ~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~----~l~~l~~~l-~s~~~~~~~~alk~l~~lv~~~~~ 1321 (1400)
=+++.+-+||-|+.++.|....++..+-..+.++++.++..- ++|.|.... .+.+..+++-|+-++..+++++..
T Consensus 383 ~e~~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~ 462 (700)
T KOG2137|consen 383 PEEVKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDK 462 (700)
T ss_pred hHHHHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHH
Confidence 356778899999999999999999999999999999998764 444444433 356778899999999999977776
Q ss_pred HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH-hh------hhcchhhhhhcHHHHHHHHHHHHh
Q 000599 1322 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM-LG------KAFLPYLERLNSTQLRLVTIYANR 1386 (1400)
Q Consensus 1322 ~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~-lg------e~~~p~l~~L~~s~~kll~~yi~r 1386 (1400)
-.+... ++.+.+++.-.++++--.-+..+-.+... -+ +-+.|++-.|+-.+.=-++-|-+.
T Consensus 463 ~~v~d~----~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~~Qy~~~ 530 (700)
T KOG2137|consen 463 AAVLDE----LLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNGEQYNKY 530 (700)
T ss_pred HHhHHH----HHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccHHHHHHH
Confidence 555443 66778899888888765555444333222 22 235566655554444223344333
No 146
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=91.67 E-value=0.68 Score=44.04 Aligned_cols=72 Identities=17% Similarity=0.150 Sum_probs=61.1
Q ss_pred hhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcch
Q 000599 1294 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLP 1367 (1400)
Q Consensus 1294 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p 1367 (1400)
...+.+...|+|..++-+|.+|++.-. .-...++.++..+...+.|.||-|=-+|++|++++....++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~~vl~ 80 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPDEVLP 80 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChHHHHH
Confidence 344556778999999999999998877 333467888999999999999999999999999999999887665
No 147
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=91.66 E-value=1.5 Score=51.53 Aligned_cols=215 Identities=11% Similarity=0.046 Sum_probs=139.6
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhh-ccCC---hHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhh--hhH
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASR-KSLT---SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGE--HFK 77 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~-~~~~---~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~--~~~ 77 (1400)
+.+....+.|-.|..++-.+.+.+...+ ..+- .+++..-+..+...+.|-...+.++.|+.|..++..+-+ .|.
T Consensus 398 leaealcktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfs 477 (666)
T KOG4825|consen 398 LEAEALCKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFS 477 (666)
T ss_pred HHHHHHhcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhh
Confidence 4566778899999999999988886653 1111 122233344445677777778888888888877655421 122
Q ss_pred -----hhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHH---HHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhc
Q 000599 78 -----LHFNALVPAVVERLGDAKQPVRDAARRLLLTLM---EVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1400)
Q Consensus 78 -----~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~---e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~f 149 (1400)
.++..-++.++-+-||....++..|.+.+..|+ +....+.|-+.|..+.-.+|.|.+-..-...|.+.+...
T Consensus 478 kledahclehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdl 557 (666)
T KOG4825|consen 478 KLEDAHCLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDL 557 (666)
T ss_pred hhhHHHHHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhc
Confidence 334555666777778988889988888776665 344556677777765566888888877777777777776
Q ss_pred cCc--chhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhCh-hHHHhhhc---CCCChhhHHHHHHHHHhhC
Q 000599 150 SAT--ELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP-QFRDELHR---HNLPNSMVKDINARLERIQ 219 (1400)
Q Consensus 150 g~~--~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~-~l~~~L~~---~~l~~~~l~~i~~~~~~~~ 219 (1400)
|.. ++.. .-...+-+..+++.--++|++|+..++.+|+..-. .+..+|-- .+=+-...+.+.+.|.+..
T Consensus 558 gkGragfie-diakkfgVpaeehglndkreaafaiicdmtrdhQarsIgedLmpddskngriilvksefEgFAkiD 632 (666)
T KOG4825|consen 558 GKGRAGFIE-DIAKKFGVPAEEHGLNDKREAAFAIICDMTRDHQARSIGEDLMPDDSKNGRIILVKSEFEGFAKID 632 (666)
T ss_pred CCCccchhH-HHHHHhCCCccccchhHHHHhHhhhhhhhcccHHHHHHHhhcCcccccCCceEEeHHHhhhhhhcc
Confidence 643 2221 22333345667777789999999999999975443 34444421 1223345666666666654
No 148
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.62 E-value=4 Score=55.83 Aligned_cols=190 Identities=16% Similarity=0.176 Sum_probs=134.1
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1247 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~ 1247 (1400)
-+..+++.++... ...+..||++|.+++.+.+.+.....+...+..+.+.+-|.+..||++...++..++...+-++
T Consensus 42 el~~I~kkL~KkD---~~TK~KaL~eL~eli~~~~~e~~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~l 118 (1312)
T KOG0803|consen 42 ELDIIVKKLLKRD---ETTKIKALQELSELIDTSDTEELKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKL 118 (1312)
T ss_pred HHHHHHHHHhccC---hHHHHHHHHhHHHhcccccchHHhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHh
Confidence 3677888887553 4788889999999998776554332244555666777888899999999999999999999999
Q ss_pred cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh-----------HHHhhhhhcc------------------
Q 000599 1248 EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-----------CLSVIVPLLV------------------ 1298 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~-----------~l~~l~~~l~------------------ 1298 (1400)
.+|+..++|..+-..-|..-.|..+|-...+..- +|++ +..+++.++.
T Consensus 119 sp~LK~li~~wl~~~~d~~~~vs~aa~~sf~~~f---~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~ 195 (1312)
T KOG0803|consen 119 SPFLKSLIPPWLGGQFDLDYPVSEAAKASFKDGF---AEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEEL 195 (1312)
T ss_pred hHHHHhhhhhhhheecccchHHHHHHHHHHHhhc---ChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHH
Confidence 9999999999999999998899888877775433 2321 3333333321
Q ss_pred -CCchhhHhHHHHHHHHHHhhcCHHH-HH---hhhh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh
Q 000599 1299 -TEDEKTLVTCINCLTKLVGRLSQEE-LM---AQLP--SFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK 1363 (1400)
Q Consensus 1299 -s~~~~~~~~alk~l~~lv~~~~~~~-l~---~~l~--~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge 1363 (1400)
++..+..-.++.++.+++...+.++ +. .-.. .--..+-+-..+..+.||-+...++..+...+-+
T Consensus 196 E~k~~Rvi~ssLl~l~~l~~~~~~~~el~~~~~~~kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~~ 267 (1312)
T KOG0803|consen 196 ESKYQRVISSSLLLLLKLFKITGDEEELHSLSEKEKTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDILN 267 (1312)
T ss_pred HHhhHHHHHHHHHHHHHHHHHhCchHhhhhhhhhhhhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhHH
Confidence 1233566678888888886665433 33 1111 1122345556688899999999997766654444
No 149
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=91.46 E-value=3.7 Score=46.81 Aligned_cols=187 Identities=22% Similarity=0.280 Sum_probs=117.3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC-ChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN-DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1247 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~-~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~ 1247 (1400)
++.++..|...++ +.-+..|+-.+....--. ....+. .+ ..+..+...+.++++.+|+.||.+|..|...-. .
T Consensus 14 l~~Ll~lL~~t~d--p~i~e~al~al~n~aaf~~nq~~Ir-~~-Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~e--n 87 (254)
T PF04826_consen 14 LQKLLCLLESTED--PFIQEKALIALGNSAAFPFNQDIIR-DL-GGISLIGSLLNDPNPSVREKALNALNNLSVNDE--N 87 (254)
T ss_pred HHHHHHHHhcCCC--hHHHHHHHHHHHhhccChhHHHHHH-Hc-CCHHHHHHHcCCCChHHHHHHHHHHHhcCCChh--h
Confidence 5677777776654 566666776665532211 112222 12 245567888999999999999999997765422 2
Q ss_pred cccHHHHHHHHHHHhcC--CcHHHHHHHHHHHHHHHhh--cCh--hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcC-
Q 000599 1248 EDSVEIVIEKLLHVTKD--AVPKVSNEAEHCLTVVLSQ--YDP--FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS- 1320 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~D--~~k~V~~aA~~al~~i~~~--~~p--~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~- 1320 (1400)
..-++..++.+++.... ..-.++.++-.++..+..- ++. ...++-+.++|.+++..++.-++|+|..|.+.-.
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np~~ 167 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENPDM 167 (254)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCHHH
Confidence 22345566666664322 2348888888888776421 111 2367777788888999999999999988875332
Q ss_pred -HHHHHhhhhhhHHHHHHHhcC-CCHHHHHHHHHHHHHHHHHhhhh
Q 000599 1321 -QEELMAQLPSFLPALFEAFGN-QSADVRKTVVFCLVDIYIMLGKA 1364 (1400)
Q Consensus 1321 -~~~l~~~l~~liP~l~~~~~d-~~seVRkaAv~~lv~~~~~lge~ 1364 (1400)
++.+.. ..++.+..-|+. ...++---++.-+-.+..++..+
T Consensus 168 ~~~Ll~~---q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~ 210 (254)
T PF04826_consen 168 TRELLSA---QVLSSFLSLFNSSESKENLLRVLTFFENINENIKKE 210 (254)
T ss_pred HHHHHhc---cchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcc
Confidence 122222 345566666665 46777777777777777777653
No 150
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=91.15 E-value=0.64 Score=63.06 Aligned_cols=206 Identities=17% Similarity=0.175 Sum_probs=127.9
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVME 1248 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~ 1248 (1400)
|++|..+|...++ +.|..|..-++.+....+.... +.++.+...++..+.|....||..++.....++-+.+..-+
T Consensus 261 ip~l~~eL~se~~---~~Rl~a~~lvg~~~~~~~~~l~-~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~~~~~~~~ 336 (1266)
T KOG1525|consen 261 IPQLEFELLSEQE---EVRLKAVKLVGRMFSDKDSQLS-ETYDDLWSAFLGRFNDISVEVRMECVESIKQCLLNNPSIAK 336 (1266)
T ss_pred HHHHHHHHhcchH---HHHHHHHHHHHHHHhcchhhhc-ccchHHHHHHHHHhccCChhhhhhHHHHhHHHHhcCchhhh
Confidence 5788888766553 7999999999999887654443 56888888999999999999999999999988887444444
Q ss_pred ccHHHHHHHHHHHhcCCcHHHHHH-----HHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhh-----
Q 000599 1249 DSVEIVIEKLLHVTKDAVPKVSNE-----AEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR----- 1318 (1400)
Q Consensus 1249 ~~~e~~l~~ll~~~~D~~k~V~~a-----A~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~----- 1318 (1400)
... ++..+-+.--| .+|+.. .......+...+-|. +++.+..-+..|.|.+|..|+.-|+.+-++
T Consensus 337 ~~~--~~~~l~~~~~D--~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~LaqlYk~~~~~~ 411 (1266)
T KOG1525|consen 337 AST--ILLALRERDLD--EDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLAQLYKNVYCLR 411 (1266)
T ss_pred HHH--HHHHHHhhcCC--hhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhh
Confidence 333 22222223333 344321 111222233334455 999999999999999999999999999885
Q ss_pred ------------cCHHHHHhhhh-------hhHH-HHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHH
Q 000599 1319 ------------LSQEELMAQLP-------SFLP-ALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLR 1378 (1400)
Q Consensus 1319 ------------~~~~~l~~~l~-------~liP-~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~k 1378 (1400)
|-++.|...+- .++. .+...+...+.++++ .+.||..++..|..-..+-|..+...|++
T Consensus 412 ~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~-Rmk~l~~~l~~~D~~a~kaf~~i~~~q~~ 490 (1266)
T KOG1525|consen 412 SAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQE-RMKHLYQLLAGLDLNAHKAFNEILKRQSR 490 (1266)
T ss_pred ccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHH-HHHHHHHHHhcccHhhhhHHHHHHHHHHH
Confidence 11222222111 1122 233334444555543 35566666655555344555555555544
Q ss_pred H---HHHHH
Q 000599 1379 L---VTIYA 1384 (1400)
Q Consensus 1379 l---l~~yi 1384 (1400)
+ +..||
T Consensus 491 ls~~vr~~I 499 (1266)
T KOG1525|consen 491 LSEEVRDYI 499 (1266)
T ss_pred HHHHHHHHh
Confidence 4 44444
No 151
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=90.88 E-value=5.1 Score=40.92 Aligned_cols=108 Identities=17% Similarity=0.149 Sum_probs=77.1
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhH
Q 000599 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1400)
Q Consensus 285 ~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f 364 (1400)
.+++.+.....+.||..-.+--+ ++.... . .-++.+.+|.+.++..|..|+..|+.++..+.+.+|..|
T Consensus 4 ~I~kATs~~~~~~D~~~il~icd----~I~~~~-~------~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f 72 (133)
T cd03561 4 LIERATSPSLEEPDWALNLELCD----LINLKP-N------GPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPF 72 (133)
T ss_pred HHHHHcCcccCCccHHHHHHHHH----HHhCCC-C------CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHH
Confidence 35666665567789985554444 443321 1 135688899999999999999999999999999999999
Q ss_pred HHH-HH-HHHHHHHHHhch---hhHHHHHHHHHHHHHHHHhCCC
Q 000599 365 EAC-AE-MFIPVLFKLVVI---TVLVIAESSDNCIKTMLRNCKA 403 (1400)
Q Consensus 365 ~~~-a~-~~lp~Ll~~~~~---~kkvi~~sa~~al~~i~~~~~~ 403 (1400)
... +. .|+..|++.+.. ....+++-+...|..|......
T Consensus 73 ~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f~~ 116 (133)
T cd03561 73 HLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESFGG 116 (133)
T ss_pred HHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 764 33 577778877765 3455677777777777765543
No 152
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.40 E-value=1.6 Score=41.58 Aligned_cols=86 Identities=23% Similarity=0.311 Sum_probs=70.9
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~ 81 (1400)
+.+++.|.+..--.|..|+..|.++++... ....++..++..+...++|...=|...|+..+..++... -.
T Consensus 6 ~~al~~L~dp~~PvRa~gL~~L~~Li~~~~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~-------p~ 76 (92)
T PF10363_consen 6 QEALSDLNDPLPPVRAHGLVLLRKLIESKS--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH-------PD 76 (92)
T ss_pred HHHHHHccCCCcchHHHHHHHHHHHHHcCC--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC-------hH
Confidence 467888899999999999999999998854 234556788888889999999999999999999998553 34
Q ss_pred hhHHHHHHHhCCCCh
Q 000599 82 ALVPAVVERLGDAKQ 96 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~ 96 (1400)
.++|.|++...|.+.
T Consensus 77 ~vl~~L~~~y~~~~~ 91 (92)
T PF10363_consen 77 EVLPILLDEYADPSE 91 (92)
T ss_pred HHHHHHHHHHhCccc
Confidence 578889988877653
No 153
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=90.37 E-value=2.6 Score=52.77 Aligned_cols=147 Identities=18% Similarity=0.239 Sum_probs=85.0
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC
Q 000599 1185 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 1264 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D 1264 (1400)
+++.-|.+-|.++.+... + .-++-+..+++++.|.+..||..|+..|-.+|+..+. |+.-+.=-|.+++.-
T Consensus 37 k~K~Laaq~I~kffk~FP-~----l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~----~v~kvaDvL~QlL~t 107 (556)
T PF05918_consen 37 KEKRLAAQFIPKFFKHFP-D----LQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE----HVSKVADVLVQLLQT 107 (556)
T ss_dssp HHHHHHHHHHHHHHCC-G-G----GHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-----HHHHHHHHHHHTT-
T ss_pred HHHHHHHHHHHHHHhhCh-h----hHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH----HHhHHHHHHHHHHhc
Confidence 444445555555544221 1 1235566899999999999999999999999996433 322222233334443
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---CCchhhHhHHHHHHHHHHhhcCHHHHH--hhh-hhhHHHHHHH
Q 000599 1265 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQEELM--AQL-PSFLPALFEA 1338 (1400)
Q Consensus 1265 ~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~~~l~--~~l-~~liP~l~~~ 1338 (1400)
-....+.++..++..++.. +|-..|..|...+. +.+..+|-.+|++|..=+..++++.+. ..+ .-|+..+.+.
T Consensus 108 dd~~E~~~v~~sL~~ll~~-d~k~tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkv 186 (556)
T PF05918_consen 108 DDPVELDAVKNSLMSLLKQ-DPKGTLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKV 186 (556)
T ss_dssp --HHHHHHHHHHHHHHHHH--HHHHHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHhc-CcHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHH
Confidence 3356777888888888876 66666666666664 567788999999995444455544433 111 2245566777
Q ss_pred hcC
Q 000599 1339 FGN 1341 (1400)
Q Consensus 1339 ~~d 1341 (1400)
+.|
T Consensus 187 L~D 189 (556)
T PF05918_consen 187 LQD 189 (556)
T ss_dssp CTT
T ss_pred HHh
Confidence 776
No 154
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=90.25 E-value=2.5 Score=45.91 Aligned_cols=84 Identities=15% Similarity=0.258 Sum_probs=71.4
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhh
Q 000599 1253 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPS 1330 (1400)
Q Consensus 1253 ~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~--~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~ 1330 (1400)
.+++.+|+.+-++...|+.+|.+.+..++.. +||-.|+|.|..+..+.+-.++-.|.+++..+.+.++ +-+...
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~-s~v~~~--- 83 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPKQCVPTLIALETSPNPSIRSRAYQLLKELHEKHE-SLVESR--- 83 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhH-HHHHHH---
Confidence 4788999999999999999999999999976 9999999999999988888899999999999999887 555444
Q ss_pred hHHHHHHHhc
Q 000599 1331 FLPALFEAFG 1340 (1400)
Q Consensus 1331 liP~l~~~~~ 1340 (1400)
++.|+..+|.
T Consensus 84 ~~~gi~~af~ 93 (187)
T PF12830_consen 84 YSEGIRLAFD 93 (187)
T ss_pred HHHHHHHHHH
Confidence 3455665554
No 155
>KOG2149 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.16 E-value=2.1 Score=50.75 Aligned_cols=121 Identities=17% Similarity=0.193 Sum_probs=102.6
Q ss_pred hHHHhhcCCCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhcccc-CCC
Q 000599 773 LSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSC-RKP 851 (1400)
Q Consensus 773 l~~~l~~~~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~-~~~ 851 (1400)
+.|.|. ....-|=+.|++++.+|+++|.+++. ++..++-.++.....++.|--+.|=..+...+..+|... .++
T Consensus 60 lkeLl~--qlkHhNakvRkdal~glkd~l~s~p~---~l~~~~~~ll~~~~~~i~D~~~~vR~~~~qll~~~i~~~~~e~ 134 (393)
T KOG2149|consen 60 LKELLS--QLKHHNAKVRKDALNGLKDLLKSHPA---ELQSHLYALLQKLRELILDDDSLVRDALYQLLDSLILPACKED 134 (393)
T ss_pred HHHHHh--hhcCchHhhhHHHHHHHHHHHHhChH---HHHHHHHHHHHHhhhhhcCccccHHHHHHHHHHHHHhhcchhh
Confidence 678876 56788889999999999999999665 344578888999999999998888888888888876664 455
Q ss_pred chhHHHHHHHHHHHhhCCchhhhHHHHHHHHHHHhccCCchhhHHHH
Q 000599 852 FESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPAL 898 (1400)
Q Consensus 852 l~~~l~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l 898 (1400)
+.+....++|.+.--|.+.-+.||.-+.+.|+.+.+.|||.....+.
T Consensus 135 ~sp~~~l~~~yi~~AMThit~~i~~dslkfL~~Ll~~~~p~~~~~~~ 181 (393)
T KOG2149|consen 135 QSPMVSLLMPYISSAMTHITPEIQEDSLKFLSLLLERYPDTFSRYAS 181 (393)
T ss_pred hcchHHHHHHHHHHHHhhccHHHHHhhHHHHHHHHHHcChHHHHHHH
Confidence 79999999999999999999999999999999999999887765444
No 156
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=90.11 E-value=4.5 Score=47.36 Aligned_cols=109 Identities=17% Similarity=0.184 Sum_probs=72.6
Q ss_pred HHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhh
Q 000599 282 LIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELL 361 (1400)
Q Consensus 282 l~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg 361 (1400)
++..+.|++..-.+.+||.--++.-+++. .+.+. =++.+..|.++|+..+-.|+..|+.++..++..+|
T Consensus 9 ~e~~v~KAT~e~nT~enW~~IlDvCD~v~-------~~~~~----~kd~lk~i~KRln~~dphV~L~AlTLlda~~~NCg 77 (462)
T KOG2199|consen 9 FEQDVEKATDEKNTSENWSLILDVCDKVG-------SDPDG----GKDCLKAIMKRLNHKDPHVVLQALTLLDACVANCG 77 (462)
T ss_pred HHHHHHHhcCcccccccHHHHHHHHHhhc-------CCCcc----cHHHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcc
Confidence 34557778777778899997666655543 22221 34566677789998899999999999999999999
Q ss_pred hhHHHH--HHHHHHHHHHHhchh-hHHHHHHHHHHHHHHHHhC
Q 000599 362 GDFEAC--AEMFIPVLFKLVVIT-VLVIAESSDNCIKTMLRNC 401 (1400)
Q Consensus 362 ~~f~~~--a~~~lp~Ll~~~~~~-kkvi~~sa~~al~~i~~~~ 401 (1400)
+.|... ...|...|..++.++ -.-+++.....+..|.+.+
T Consensus 78 ~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee~ 120 (462)
T KOG2199|consen 78 KRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEEF 120 (462)
T ss_pred hHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHHh
Confidence 998764 344666666655532 2224444444444454433
No 157
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=89.88 E-value=1.5 Score=42.98 Aligned_cols=77 Identities=16% Similarity=0.270 Sum_probs=66.7
Q ss_pred CchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHHHH
Q 000599 1300 EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLR 1378 (1400)
Q Consensus 1300 ~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~~k 1378 (1400)
+....+..|++.|+.+++ .....+...+|.++-.|..+++.. ++|..|..|.-.+-..+++ ++.|+++.....=..
T Consensus 27 ~~~~ek~~~l~si~~lI~-~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi~~L~~~~l~~ll~~~~~~l~~ 103 (107)
T PF08064_consen 27 KPIPEKKRALRSIEELIK-LGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFIKTLDEEDLGPLLDQIFAILLP 103 (107)
T ss_pred CCHHHHHHHHHHHHHHHH-HhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHH
Confidence 467789999999999997 777899999999999999998877 9999999999999999997 899999887665443
Q ss_pred H
Q 000599 1379 L 1379 (1400)
Q Consensus 1379 l 1379 (1400)
+
T Consensus 104 ~ 104 (107)
T PF08064_consen 104 L 104 (107)
T ss_pred h
Confidence 3
No 158
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.64 E-value=3.3 Score=50.84 Aligned_cols=105 Identities=20% Similarity=0.188 Sum_probs=73.1
Q ss_pred HHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhH
Q 000599 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1400)
Q Consensus 285 ~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f 364 (1400)
.+++.+.....+.||-.-+ .|..+|... ... -++.+.+|++++.+.++.|+..|+.+|..+.+.+|..|
T Consensus 5 ~IdkAT~~~l~~pDWa~Nl----eIcD~IN~~---~~~----~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~f 73 (470)
T KOG1087|consen 5 LIDKATSESLAEPDWALNL----EICDLINST---EGG----PKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSF 73 (470)
T ss_pred HHHHhhcccccCccHHHHH----HHHHHHhcC---ccC----cHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHH
Confidence 4566666666789998544 344444321 111 34789999999999999999999999999999999999
Q ss_pred HHHH--HHHHHHHHHHhchh--hHHHHHHHHHHHHHHHHh
Q 000599 365 EACA--EMFIPVLFKLVVIT--VLVIAESSDNCIKTMLRN 400 (1400)
Q Consensus 365 ~~~a--~~~lp~Ll~~~~~~--kkvi~~sa~~al~~i~~~ 400 (1400)
...+ +.|+..+++.+.++ -..|++-+...|++|-+.
T Consensus 74 h~~Va~k~fL~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 74 HLQVASKEFLNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHHHHHHHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 8543 44888777666554 234555556666665544
No 159
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=89.49 E-value=16 Score=46.17 Aligned_cols=179 Identities=20% Similarity=0.128 Sum_probs=112.2
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH-hchh-
Q 000599 39 VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV-SSPT- 116 (1400)
Q Consensus 39 ~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~-~~p~- 116 (1400)
+..++..+.++....--+|.-..+++|..+....+..=...+..+.-.++.|+.|.-+.||-.|.-+|..+-+- -.+.
T Consensus 83 V~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~dee~ 162 (892)
T KOG2025|consen 83 VAGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDEEC 162 (892)
T ss_pred HHHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCCcc
Confidence 34455555566555556677788888888776433333456777888899999999999999998888888631 1111
Q ss_pred HHHHHHhhhhhhcCChhHHHHHHHHHHHH--------------------------HHhccCcchhhhhhhHHHHHHhhCC
Q 000599 117 IIVERAGSYAWTHRSWRVREEFARTVTSA--------------------------IGLFSATELTLQRAILPPILQMLND 170 (1400)
Q Consensus 117 ~V~e~l~~~~~~~Knpkvr~~~l~~L~~~--------------------------l~~fg~~~l~l~k~~lp~l~~~L~d 170 (1400)
.|...+....-+..++.||..++..|.-- +...-...+++ +..+-.+-..|+|
T Consensus 163 ~v~n~l~~liqnDpS~EVRRaaLsnI~vdnsTlp~IveRarDV~~anRrlvY~r~lpkid~r~lsi-~krv~LlewgLnD 241 (892)
T KOG2025|consen 163 PVVNLLKDLIQNDPSDEVRRAALSNISVDNSTLPCIVERARDVSGANRRLVYERCLPKIDLRSLSI-DKRVLLLEWGLND 241 (892)
T ss_pred cHHHHHHHHHhcCCcHHHHHHHHHhhccCcccchhHHHHhhhhhHHHHHHHHHHhhhhhhhhhhhH-HHHHHHHHHhhhh
Confidence 34444433345678888888777665321 11111112333 5566667778999
Q ss_pred CChhHHHHHHHHHHHHH-hhhChhHHHhhhcCCC---ChhhHHHHHHHHHhh
Q 000599 171 PNPGVREAAILCIEEMY-TYAGPQFRDELHRHNL---PNSMVKDINARLERI 218 (1400)
Q Consensus 171 ~n~~VR~aA~~~l~~l~-~~~G~~l~~~L~~~~l---~~~~l~~i~~~~~~~ 218 (1400)
+.-.||.++...+..=+ +.....+...|.+-++ ...-.+.|++-|...
T Consensus 242 Re~sVk~A~~d~il~~Wl~~~dgni~ElL~~ldvsnss~vavk~lealf~~v 293 (892)
T KOG2025|consen 242 REFSVKGALVDAILSGWLRFSDGNILELLERLDVSNSSEVAVKALEALFSGV 293 (892)
T ss_pred hhhHHHHHHHHHHHHHHhhhccccHHHHHHHhccccchHHHHHHHHHHHHHH
Confidence 99999999998876422 1222346666665444 244667777766643
No 160
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=89.12 E-value=18 Score=46.96 Aligned_cols=164 Identities=14% Similarity=0.144 Sum_probs=109.6
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK 1263 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~ 1263 (1400)
..+|.+|++.+..-+..|.. ....|..+++.+. ..|..++..+=.+|.-..+.-+ +-+.+.++.+++-.+
T Consensus 33 ~~~kidAmK~iIa~M~~G~d--mssLf~dViK~~~----trd~ElKrL~ylYl~~yak~~P----~~~lLavNti~kDl~ 102 (757)
T COG5096 33 DYKKIDAMKKIIAQMSLGED--MSSLFPDVIKNVA----TRDVELKRLLYLYLERYAKLKP----ELALLAVNTIQKDLQ 102 (757)
T ss_pred hHHHHHHHHHHHHHHhcCCC--hHHHHHHHHHHHH----hcCHHHHHHHHHHHHHHhccCH----HHHHHHHHHHHhhcc
Confidence 37899999998887776653 2234554444443 4556677666444444443222 346678888899999
Q ss_pred CCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCC
Q 000599 1264 DAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQS 1343 (1400)
Q Consensus 1264 D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~ 1343 (1400)
|+...++-.|...+..|=..-=-..+++-|...+++..-.+|..|+-++.++. +++++-+... .++..+...+.|++
T Consensus 103 d~N~~iR~~AlR~ls~l~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly-~ld~~l~~~~--g~~~~l~~l~~D~d 179 (757)
T COG5096 103 DPNEEIRGFALRTLSLLRVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLY-RLDKDLYHEL--GLIDILKELVADSD 179 (757)
T ss_pred CCCHHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHH-hcCHhhhhcc--cHHHHHHHHhhCCC
Confidence 99999988776655432211111235555556666777788999999999999 6776555332 13556777888999
Q ss_pred HHHHHHHHHHHHHHHHH
Q 000599 1344 ADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1344 seVRkaAv~~lv~~~~~ 1360 (1400)
+.|-.+|+.++..+|.-
T Consensus 180 P~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 180 PIVIANALASLAEIDPE 196 (757)
T ss_pred chHHHHHHHHHHHhchh
Confidence 99999999998877743
No 161
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=88.65 E-value=1.1e+02 Score=41.53 Aligned_cols=104 Identities=16% Similarity=0.129 Sum_probs=71.7
Q ss_pred HHHHHhCCCChhHHHHHHHHHHHHHHH--hchh----------HHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcc
Q 000599 86 AVVERLGDAKQPVRDAARRLLLTLMEV--SSPT----------IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE 153 (1400)
Q Consensus 86 ~LleKLgD~K~~vre~a~~~L~~l~e~--~~p~----------~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~ 153 (1400)
.+++-|+...=.+|.+..+++..+... .+++ ..++.+.+ -+-.-++-||..+++.+....+......
T Consensus 316 ~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~~sk~~r~~~le~l~e-rl~Dvsa~vRskVLqv~~~l~~~~s~p~ 394 (1251)
T KOG0414|consen 316 LLVDLLDSESYTLRNAVLEICANLVASELRDEELEEMSKSLRDELLELLRE-RLLDVSAYVRSKVLQVFRRLFQQHSIPL 394 (1251)
T ss_pred HHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHH-HhhcccHHHHHHHHHHHHHHHHccCCCc
Confidence 345555555666888888877777632 1111 23444443 4567789999999999877665543322
Q ss_pred hhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 154 LTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 154 l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
-.+ ..++..++..|+|.+.-||..|++++..+.....
T Consensus 395 ~~~-~eV~~la~grl~DkSslVRk~Ai~Ll~~~L~~~P 431 (1251)
T KOG0414|consen 395 GSR-TEVLELAIGRLEDKSSLVRKNAIQLLSSLLDRHP 431 (1251)
T ss_pred cHH-HHHHHHHhcccccccHHHHHHHHHHHHHHHhcCC
Confidence 223 4688888999999999999999999999876654
No 162
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=88.64 E-value=15 Score=46.22 Aligned_cols=140 Identities=18% Similarity=0.206 Sum_probs=84.6
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHH
Q 000599 41 SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVE 120 (1400)
Q Consensus 41 ~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e 120 (1400)
.-++.+..+..|-...|...|+.-|..+++. -..++..++..|+.-|..-.+.-.+.+..+|+.++.. .|..++.
T Consensus 59 ~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~----~~~~v~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~-d~k~tL~ 133 (556)
T PF05918_consen 59 EAINAQLDLCEDEDVQIRKQAIKGLPQLCKD----NPEHVSKVADVLVQLLQTDDPVELDAVKNSLMSLLKQ-DPKGTLT 133 (556)
T ss_dssp HHHHHHHHHHT-SSHHHHHHHHHHGGGG--T------T-HHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--HHHHHH
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhHHHHHHh----HHHHHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHhc-CcHHHHH
Confidence 3445555667788888888888888887754 2356666777777777665666778899999999874 3444444
Q ss_pred HHhhhhh--hcCChhHHHHHHHHHHHHHHhccCcchh----hhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 121 RAGSYAW--THRSWRVREEFARTVTSAIGLFSATELT----LQRAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 121 ~l~~~~~--~~Knpkvr~~~l~~L~~~l~~fg~~~l~----l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
.++.... ..-...+|+.++.+|..-+...+...+. ..+.++..+.+.|+| |=..=+.++..+.++
T Consensus 134 ~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~D----VTaeEF~l~m~lL~~ 204 (556)
T PF05918_consen 134 GLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQD----VTAEEFELFMSLLKS 204 (556)
T ss_dssp HHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT------HHHHHHHHHHHHT
T ss_pred HHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHh----ccHHHHHHHHHHHHh
Confidence 4444222 2345679999999998877777666555 224466777788877 333444444444443
No 163
>PF05536 Neurochondrin: Neurochondrin
Probab=88.63 E-value=13 Score=47.42 Aligned_cols=183 Identities=19% Similarity=0.261 Sum_probs=121.3
Q ss_pred CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHh-cC------CC-hHHHHHHHHHH
Q 000599 1167 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLEVL-DD------AD-SSVREVALSLI 1236 (1400)
Q Consensus 1167 ~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~--~f~~ll~~Ll~~l-~d------~~-~~vR~~aL~~L 1236 (1400)
+.+.+.++.|...+| ++|-.||.-+.+++..++...-.+ .|+.|=.-++..| .. .+ ..-+..|+.+|
T Consensus 5 ~~l~~c~~lL~~~~D---~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL 81 (543)
T PF05536_consen 5 ASLEKCLSLLKSADD---TERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVL 81 (543)
T ss_pred HHHHHHHHHhccCCc---HHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHH
Confidence 446777777777764 899999999999999776433221 3443333333333 22 12 33678899999
Q ss_pred HHHHhhccccccccHHHHHHHHHHHhcCCcH-HHHHHHHHHHHHHHhhcChh-------hHHHhhhhhccCCchhhHhHH
Q 000599 1237 NEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP-KVSNEAEHCLTVVLSQYDPF-------RCLSVIVPLLVTEDEKTLVTC 1308 (1400)
Q Consensus 1237 ~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k-~V~~aA~~al~~i~~~~~p~-------~~l~~l~~~l~s~~~~~~~~a 1308 (1400)
...+....-.-++-+...+|.+++.+..+.. .++..|-+|+..|+ ..+.- ..++.|+.++.+. ....-.|
T Consensus 82 ~~f~~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ia-s~~~G~~aLl~~g~v~~L~ei~~~~-~~~~E~A 159 (543)
T PF05536_consen 82 AAFCRDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIA-SSPEGAKALLESGAVPALCEIIPNQ-SFQMEIA 159 (543)
T ss_pred HHHcCChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHH-cCcHhHHHHHhcCCHHHHHHHHHhC-cchHHHH
Confidence 9999833333455577889999999877666 99999999999999 33332 2667777777663 3335667
Q ss_pred HHHHHHHHhhcCHHHHHh---hhhhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000599 1309 INCLTKLVGRLSQEELMA---QLPSFLPALFEAFGNQSADVRKTVVFCL 1354 (1400)
Q Consensus 1309 lk~l~~lv~~~~~~~l~~---~l~~liP~l~~~~~d~~seVRkaAv~~l 1354 (1400)
++++..++...+.+.... .+..+++.|...+.....+-+=..-.-|
T Consensus 160 l~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L 208 (543)
T PF05536_consen 160 LNLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFL 208 (543)
T ss_pred HHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHH
Confidence 888888877766544433 4556777778777765555554443333
No 164
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=88.53 E-value=14 Score=45.45 Aligned_cols=183 Identities=17% Similarity=0.209 Sum_probs=114.6
Q ss_pred HHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhhCCchhhhHHHHHHHHHHHhccC-CchhhH
Q 000599 817 KVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTY-SVDSLL 895 (1400)
Q Consensus 817 ~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~-~~~~~l 895 (1400)
.++.-+.+.+-....+|=-..|.+|..++...++-=+.....|+-.|.+|+=|--..||-.|..+|...-+-- ..+--.
T Consensus 91 ~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~neen~~ 170 (885)
T COG5218 91 GTFYHLLRGTESKDKKVRKRSLQILALLSDVVREIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEENRI 170 (885)
T ss_pred HHHHHHHhcccCcchhHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChHHHH
Confidence 3444444555556678999999999999999888667888999999999999999999999999999887533 333222
Q ss_pred HHHHHhhccC-CCchhHHHHHHHHH-------HHHhhhhcCCCCCCCcchHHHHHHh--------------hccc-ccCC
Q 000599 896 PALLRSLDEQ-RSPKAKLAVIEFAI-------SSLNKHAMNSEGSGNLGILKLWLAK--------------LTPL-VHDK 952 (1400)
Q Consensus 896 ~~l~r~l~~~-~~~k~k~~~L~~l~-------~~l~~~~~~~~~~~~~~~~~~~l~~--------------i~~l-~~dk 952 (1400)
-.++.++.+. -+..+|-.+|--+. ..|++ +.+..+....-.-...|++ ++.| +.||
T Consensus 171 ~n~l~~~vqnDPS~EVRr~allni~vdnsT~p~IlER-arDv~~anRr~vY~r~Lp~iGd~~~lsi~kri~l~ewgl~dR 249 (885)
T COG5218 171 VNLLKDIVQNDPSDEVRRLALLNISVDNSTYPCILER-ARDVSGANRRMVYERCLPRIGDLKSLSIDKRILLMEWGLLDR 249 (885)
T ss_pred HHHHHHHHhcCcHHHHHHHHHHHeeeCCCcchhHHHH-hhhhhHHHHHHHHHHHhhhhcchhhccccceehhhhhcchhh
Confidence 2244444332 23466655543321 11111 2222211000000011222 3446 6789
Q ss_pred CHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHHhhhcc
Q 000599 953 NTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQYTP 1000 (1400)
Q Consensus 953 s~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l~~~~~ 1000 (1400)
.-.||+|+...|..-|...-...+...+..|.-.....+..+|+.+|+
T Consensus 250 e~sv~~a~~d~ia~~w~~~~d~~lveLle~lDvSr~sv~v~aik~~F~ 297 (885)
T COG5218 250 EFSVKGALVDAIASAWRIPEDLRLVELLEFLDVSRRSVLVAAIKGVFE 297 (885)
T ss_pred hhhHHHHHHHHHHHHhcccccccHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence 999999999999998865544346665655666666676677776554
No 165
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=87.56 E-value=26 Score=41.20 Aligned_cols=178 Identities=12% Similarity=0.124 Sum_probs=106.9
Q ss_pred cCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh-hhhHHHH
Q 000599 9 RAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF-NALVPAV 87 (1400)
Q Consensus 9 ~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~-~~ilp~L 87 (1400)
.+.+-..|..+++.|..++++.+...+.-.++-+...+ ..+++++..|...|..+|+.++.+....-...+ ...+..|
T Consensus 93 ~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll-~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L 171 (342)
T KOG2160|consen 93 SSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLL-GYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL 171 (342)
T ss_pred ccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHH-HHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence 45678899999999999998865432222222223333 388999999999999999999876433211111 1256777
Q ss_pred HHHh-CCCChhHHHHHHHHHHHHHHHhchhH-H------HHHHhhhhhhc--CChhHHHHHHHHHHHHHHhccCcchhhh
Q 000599 88 VERL-GDAKQPVRDAARRLLLTLMEVSSPTI-I------VERAGSYAWTH--RSWRVREEFARTVTSAIGLFSATELTLQ 157 (1400)
Q Consensus 88 leKL-gD~K~~vre~a~~~L~~l~e~~~p~~-V------~e~l~~~~~~~--Knpkvr~~~l~~L~~~l~~fg~~~l~l~ 157 (1400)
+.-| .|....+|.+|.-++..++...-|.. - +..|.+ ++.. .+.+.+.-++..+...+..--...-...
T Consensus 172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~-vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~ 250 (342)
T KOG2160|consen 172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRD-VLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIAS 250 (342)
T ss_pred HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHH-HHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHH
Confidence 7776 45555677888888888887543321 1 223333 5555 5667777677766666554332211110
Q ss_pred -hhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 158 -RAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 158 -k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
..+-..+..+...-+-++++.|...+.++-.
T Consensus 251 ~~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~ 282 (342)
T KOG2160|consen 251 SLGFQRVLENLISSLDFEVNEAALTALLSLLS 282 (342)
T ss_pred HhhhhHHHHHHhhccchhhhHHHHHHHHHHHH
Confidence 1222333444555566777777776666543
No 166
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=87.53 E-value=17 Score=47.57 Aligned_cols=180 Identities=14% Similarity=0.213 Sum_probs=123.6
Q ss_pred HHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhc------C--CChHHHHHHHHHHHHHHhhc--cccccccHHH-HHH
Q 000599 1188 HGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD------D--ADSSVREVALSLINEMLKNQ--KDVMEDSVEI-VIE 1256 (1400)
Q Consensus 1188 ~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~------d--~~~~vR~~aL~~L~~l~~~~--~~~~~~~~e~-~l~ 1256 (1400)
.+|+.-|..+...-+. ++|..++.-+.++|. . ++..-.+.||+++..|+..+ ...+++-+|. +++
T Consensus 390 ~Aa~~~l~~~~~KR~k----e~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~mE~flv~ 465 (1010)
T KOG1991|consen 390 TAALDFLTTLVSKRGK----ETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQMEYFLVN 465 (1010)
T ss_pred HHHHHHHHHHHHhcch----hhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHHHHHHHHH
Confidence 3344444444433322 346666666666664 2 34445678999999998765 3446655553 566
Q ss_pred HHHHHhcCCcHHHHHHHHHHHHHHHh-hcChh----hHHHhhhhhcc-CCchhhHhHHHHHHHHHHhhcC-HHH-HHhhh
Q 000599 1257 KLLHVTKDAVPKVSNEAEHCLTVVLS-QYDPF----RCLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLS-QEE-LMAQL 1328 (1400)
Q Consensus 1257 ~ll~~~~D~~k~V~~aA~~al~~i~~-~~~p~----~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~~-~~~-l~~~l 1328 (1400)
.|+=.+.++.--.+..|...+..++. -++-+ ..+.....++. +..-|+++.|.--|.-++.... .++ +.+|+
T Consensus 466 hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hv 545 (1010)
T KOG1991|consen 466 HVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHV 545 (1010)
T ss_pred HhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhh
Confidence 77778888877777777777787773 34333 34555555555 7788999988777777775554 224 89999
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcH
Q 000599 1329 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNS 1374 (1400)
Q Consensus 1329 ~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~ 1374 (1400)
|.+|..|.+-+.+.+.|.=. +||-++-..|+|++-||=..|..
T Consensus 546 p~~mq~lL~L~ne~End~Lt---~vme~iV~~fseElsPfA~eL~q 588 (1010)
T KOG1991|consen 546 PPIMQELLKLSNEVENDDLT---NVMEKIVCKFSEELSPFAVELCQ 588 (1010)
T ss_pred hHHHHHHHHHHHhcchhHHH---HHHHHHHHHHHHhhchhHHHHHH
Confidence 99999999999999998754 56666777889999999887764
No 167
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=87.51 E-value=9.3 Score=45.43 Aligned_cols=88 Identities=19% Similarity=0.263 Sum_probs=49.8
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVM 1247 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~ 1247 (1400)
.+..+++.+.+.. +..|..|...+..+- -...+..+...+.|.++.+|..|...|..+ .
T Consensus 44 ~~~~~~~~l~~~~---~~vr~~aa~~l~~~~-----------~~~av~~l~~~l~d~~~~vr~~a~~aLg~~-------~ 102 (335)
T COG1413 44 AADELLKLLEDED---LLVRLSAAVALGELG-----------SEEAVPLLRELLSDEDPRVRDAAADALGEL-------G 102 (335)
T ss_pred hHHHHHHHHcCCC---HHHHHHHHHHHhhhc-----------hHHHHHHHHHHhcCCCHHHHHHHHHHHHcc-------C
Confidence 3556666665542 567777776643211 234445778888888888888777633221 2
Q ss_pred cccHHHHHHHHHHHhc-CCcHHHHHHHHHHHHH
Q 000599 1248 EDSVEIVIEKLLHVTK-DAVPKVSNEAEHCLTV 1279 (1400)
Q Consensus 1248 ~~~~e~~l~~ll~~~~-D~~k~V~~aA~~al~~ 1279 (1400)
.+. .++.++..+. |....|+..|..++..
T Consensus 103 ~~~---a~~~li~~l~~d~~~~vR~~aa~aL~~ 132 (335)
T COG1413 103 DPE---AVPPLVELLENDENEGVRAAAARALGK 132 (335)
T ss_pred Chh---HHHHHHHHHHcCCcHhHHHHHHHHHHh
Confidence 222 2333333333 6667777777666654
No 168
>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p [].
Probab=87.33 E-value=5.5 Score=46.26 Aligned_cols=131 Identities=16% Similarity=0.201 Sum_probs=93.5
Q ss_pred ccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh------------HHHhhhhhcc--------CCchhh
Q 000599 1245 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR------------CLSVIVPLLV--------TEDEKT 1304 (1400)
Q Consensus 1245 ~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~------------~l~~l~~~l~--------s~~~~~ 1304 (1400)
..++.+...++|.+|..+.|....++..+..|+..++..+++.. +...+.+.+. .+....
T Consensus 111 ~~i~~~~~liiP~iL~llDD~~~~~K~~G~~lL~~ll~~~~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~L 190 (282)
T PF10521_consen 111 PWISQHWPLIIPPILNLLDDYSPEIKIQGCQLLHHLLEKVPAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLEL 190 (282)
T ss_pred chHHHhhhHHHhhHHHHhcCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHH
Confidence 44678889999999999999999999999999999999887654 2223333332 344566
Q ss_pred HhHHHHHHHHHHhhc---CHHHHHhhh-hhhHHHHHHHhcCCC----HHHHHHHHHHHHHHHHHhhhhcchhhhhhcHH
Q 000599 1305 LVTCINCLTKLVGRL---SQEELMAQL-PSFLPALFEAFGNQS----ADVRKTVVFCLVDIYIMLGKAFLPYLERLNST 1375 (1400)
Q Consensus 1305 ~~~alk~l~~lv~~~---~~~~l~~~l-~~liP~l~~~~~d~~----seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s 1375 (1400)
...++.++..|+... +...=...+ ..+-.+|..+|.+.. ..+|......+..+...+|-....|+..+.+-
T Consensus 191 l~~ay~~L~~L~~~~~~~~~~~r~~~l~~~l~e~IL~~~~~~~~~~~~~l~~~ll~~l~~~i~~lGi~~~~hL~rii~~ 269 (282)
T PF10521_consen 191 LQAAYPALLSLLKTQENDDSNPRSTWLDKILREGILSSMEHESSFSYPRLRTVLLQQLPPIIDELGISSVKHLQRIIPV 269 (282)
T ss_pred HHHHHHHHHHHHHhhccCCcccchHHHHHHHHHHHhhhceeccccCchhHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 677777777775431 111111223 333455777776554 68999999999999999999999999888653
No 169
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=87.33 E-value=2.4 Score=45.10 Aligned_cols=88 Identities=14% Similarity=0.314 Sum_probs=71.1
Q ss_pred CChhhHHHHHHHHHHHHhcCCCchH------HHHHHH-HHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHH
Q 000599 785 SDWCARVSAFNYLRSLLQQGPKGIQ------EVIQNF-EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYME 857 (1400)
Q Consensus 785 ~~W~~R~~gl~~L~~~l~~~~~~~~------~v~~~l-~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~ 857 (1400)
.+...|.=||+-|..+|+++...+. +...-+ +.+|..+.+-+..+++.|+..+|.++..++..++..++..+.
T Consensus 34 ~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~~~~~i~~~slri~~~l~~~~~~~Lk~ele 113 (168)
T PF12783_consen 34 HDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSSSDFPIFSRSLRIFLTLLSRFRSHLKLELE 113 (168)
T ss_pred hhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888899999999988765333 232233 478888888887788999999999999999999999999999
Q ss_pred HHHHHHHHhhCCchh
Q 000599 858 RILPHVFSRLIDPKE 872 (1400)
Q Consensus 858 ~ll~~L~~klgD~k~ 872 (1400)
.+++.++.++-+.+.
T Consensus 114 ~~l~~i~~~il~~~~ 128 (168)
T PF12783_consen 114 VFLSHIILRILESDN 128 (168)
T ss_pred HHHHHHHHHHHccCC
Confidence 999999998754433
No 170
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=87.28 E-value=16 Score=39.96 Aligned_cols=82 Identities=12% Similarity=0.147 Sum_probs=69.8
Q ss_pred HHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhh
Q 000599 1217 VLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPL 1296 (1400)
Q Consensus 1217 Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~ 1296 (1400)
+...|+=+-...-..+|.++..|+...+.+..+++..+|..+-+...++.-..+.+++.|+.+.+.++.|+.++.++.=.
T Consensus 5 ~e~~L~~~y~~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLn 84 (198)
T PF08161_consen 5 LESLLSYRYQHAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLN 84 (198)
T ss_pred HHHHhCcchHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCC
Confidence 34444334445667799999999999999999999999999999999988889999999999999999999999998866
Q ss_pred cc
Q 000599 1297 LV 1298 (1400)
Q Consensus 1297 l~ 1298 (1400)
+.
T Consensus 85 l~ 86 (198)
T PF08161_consen 85 LD 86 (198)
T ss_pred cc
Confidence 65
No 171
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=87.16 E-value=0.68 Score=37.15 Aligned_cols=40 Identities=20% Similarity=0.257 Sum_probs=29.4
Q ss_pred HHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000599 1311 CLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1353 (1400)
Q Consensus 1311 ~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~ 1353 (1400)
+|..+++ ..+..+ ..+.++..|.+.+.|.++.||+||+..
T Consensus 2 ~l~~iv~-~dp~ll--~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 2 ALSSIVE-KDPTLL--DSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred hHHHHHh-cCcccc--chHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 4555553 333444 335889999999999999999999865
No 172
>KOG0803 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=13 Score=51.13 Aligned_cols=188 Identities=13% Similarity=0.138 Sum_probs=133.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHh-HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
..++.+|.-+|-+.|.-|+++|.+++.+-.-.. ... +......+.+.+.|-+..|..+..+++..+...+++.+.+|.
T Consensus 44 ~~I~kkL~KkD~~TK~KaL~eL~eli~~~~~e~-~~~il~~w~~i~~kl~~d~~~~VR~~t~~v~s~l~t~lkk~lsp~L 122 (1312)
T KOG0803|consen 44 DIIVKKLLKRDETTKIKALQELSELIDTSDTEE-LKGILPEWLVIYAKLIIDEDRTVRLLTHDVFSKLLTKLKKKLSPFL 122 (1312)
T ss_pred HHHHHHHhccChHHHHHHHHhHHHhcccccchH-HhhhHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence 467889999999999999999999997632110 111 233445567889999999999999999999999999999999
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHH---------Hhchh--HHHHHH-h--------------hhhhhcCChhH
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLME---------VSSPT--IIVERA-G--------------SYAWTHRSWRV 134 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e---------~~~p~--~V~e~l-~--------------~~~~~~Knpkv 134 (1400)
..++|..+--.-|.-..|-.+|.+.+..... .|.|+ .+..++ + ..-...|-+||
T Consensus 123 K~li~~wl~~~~d~~~~vs~aa~~sf~~~f~~ek~~~v~~~c~~~i~~~~~~~~~~~~~~slSd~~~~s~Ee~E~k~~Rv 202 (1312)
T KOG0803|consen 123 KSLIPPWLGGQFDLDYPVSEAAKASFKDGFAEEKDRHVWFKCDPEIFYLVTEILVKETPDSLSDLRTLSSEELESKYQRV 202 (1312)
T ss_pred HhhhhhhhheecccchHHHHHHHHHHHhhcChhhhHHHHHHhhHHHHHHHHHHHhccCccccchhhhcchHHHHHhhHHH
Confidence 9999987755556665566666666555432 23332 112221 1 12244677899
Q ss_pred HHHHHHHHHHHHHhccCcc-hh-----hhhhh--HHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 135 REEFARTVTSAIGLFSATE-LT-----LQRAI--LPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 135 r~~~l~~L~~~l~~fg~~~-l~-----l~k~~--lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
..+++..+...+...|... +. + |.+ -..+.+++.+.++.||.+..+++..+...+-
T Consensus 203 i~ssLl~l~~l~~~~~~~~el~~~~~~~-kt~~s~~~fWk~~~~k~~~i~~~~~ell~~l~~~i~ 266 (1312)
T KOG0803|consen 203 ISSSLLLLLKLFKITGDEEELHSLSEKE-KTFLSSEKFWKLLKSKSPSIKVALLELLLSLIDDIL 266 (1312)
T ss_pred HHHHHHHHHHHHHHhCchHhhhhhhhhh-hhhhhHHHHHHHhcCCCcchhHHHHHHHHHHHhhhH
Confidence 9999999988887777421 11 1 332 2445788999999999999999888776544
No 173
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=86.83 E-value=8.1 Score=50.30 Aligned_cols=151 Identities=17% Similarity=0.274 Sum_probs=106.7
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh--hhHHHhh
Q 000599 1216 AVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVI 1293 (1400)
Q Consensus 1216 ~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p--~~~l~~l 1293 (1400)
.|+..|...+..+.+.+-..|.+.+..-... .++..+++.|-.. ....++..++..=.| -.++..|
T Consensus 8 ~l~~~l~s~~~~~~~~~~~~~~~~~~~~~~~------~l~~~l~~y~~~t------~s~~~~~il~~~~~P~~K~~~~~l 75 (668)
T PF04388_consen 8 ELLSLLESNDLSVLEEIKALLQELLNSDREP------WLVNGLVDYYLST------NSQRALEILVGVQEPHDKHLFDKL 75 (668)
T ss_pred HHHHHhcCCchhhHHHHHHHHHHHhhccchH------HHHHHHHHHHhhc------CcHHHHHHHHhcCCccHHHHHHHH
Confidence 3555566666667777777777777653322 2466666666433 233455566666677 5699999
Q ss_pred hhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhc-CCCHHHHHHHHHHHHHHHHHhhhhcchhhhh
Q 000599 1294 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFG-NQSADVRKTVVFCLVDIYIMLGKAFLPYLER 1371 (1400)
Q Consensus 1294 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l-~~liP~l~~~~~-d~~seVRkaAv~~lv~~~~~lge~~~p~l~~ 1371 (1400)
..++....+ |+.+|-+|..+|...++ -+...+ ..+++.|.+|+. |++.-|=-+|+.||+.+-=++...+.|||+.
T Consensus 76 ~~~~~~~~~--Rl~~L~Ll~~~v~~qp~-~l~~i~~t~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~~ 152 (668)
T PF04388_consen 76 NDYFVKPSY--RLQALTLLGHFVRSQPP-WLYKILQTPLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLPD 152 (668)
T ss_pred HHHHcCchh--HHHHHHHHHHHHhcCCc-hHHHHhcChhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHHH
Confidence 999976554 89999999999976664 444433 367888888876 9999999999999998888888888888887
Q ss_pred hcHHHHHHHH
Q 000599 1372 LNSTQLRLVT 1381 (1400)
Q Consensus 1372 L~~s~~kll~ 1381 (1400)
|=.-.-+|+.
T Consensus 153 Lf~If~Rl~~ 162 (668)
T PF04388_consen 153 LFNIFGRLLS 162 (668)
T ss_pred HHHHHHHHHH
Confidence 6666555553
No 174
>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain. The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t
Probab=86.54 E-value=3.4 Score=41.36 Aligned_cols=98 Identities=10% Similarity=0.148 Sum_probs=72.9
Q ss_pred CCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHH
Q 000599 782 SPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILP 861 (1400)
Q Consensus 782 ~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~ 861 (1400)
+.+.+|-.-..-++.+.++.-... +.+..++|.|.++|.|.+.-|-.++|-+|..++..-...|..|+..-..
T Consensus 10 Tsdd~~p~pgy~~~Eia~~t~~s~-------~~~~ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~ 82 (122)
T cd03572 10 TSDDDEPTPGYLYEEIAKLTRKSV-------GSCQELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSA 82 (122)
T ss_pred hcCCCCCCchHHHHHHHHHHHcCH-------HHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHH
Confidence 345566666666666666655422 3677899999999999998998999999999999988999999887665
Q ss_pred HHHHhh---C--------CchhhhHHHHHHHHHHHh
Q 000599 862 HVFSRL---I--------DPKELVRQPCSTTLDIVS 886 (1400)
Q Consensus 862 ~L~~kl---g--------D~k~~vr~~~~~~L~~~~ 886 (1400)
.+-... | +....||.+|++++.++.
T Consensus 83 ~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if 118 (122)
T cd03572 83 QIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF 118 (122)
T ss_pred HHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence 443322 3 235568888888888775
No 175
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=86.49 E-value=13 Score=45.81 Aligned_cols=175 Identities=14% Similarity=0.141 Sum_probs=96.8
Q ss_pred HHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhc----ccchHHHHHHHHHHHH
Q 000599 280 KELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLS----DRRSSIVKQACHLLCF 355 (1400)
Q Consensus 280 ~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~----Dlrs~Vv~~Ac~~l~~ 355 (1400)
.|++-.+++|++.+.+ .|=..|.+||+.|+ .+.. +.+.+..++.-|...+. -.|-.+.....+++-.
T Consensus 203 ~ElQlYy~~It~a~~g-~~~~~r~eAL~sL~-------TDsG-L~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rS 273 (576)
T KOG2549|consen 203 VELQLYYKEITEACTG-SDEPLRQEALQSLE-------TDSG-LQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRS 273 (576)
T ss_pred HHHHHHHHHHHHHHhc-CCHHHHHHHHHhhc-------cCcc-HHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHH
Confidence 5666778999998865 77788999999887 2221 11112233322222221 2333444444444444
Q ss_pred HHHHhhhhHHHHHHHHHHHHHHHhchhhH----------HHHHHHHHHHHHHHHhCC------CcchHHHHHHHhhhCCC
Q 000599 356 LSKELLGDFEACAEMFIPVLFKLVVITVL----------VIAESSDNCIKTMLRNCK------AVRVLPRIADCAKNDRN 419 (1400)
Q Consensus 356 La~~Lg~~f~~~a~~~lp~Ll~~~~~~kk----------vi~~sa~~al~~i~~~~~------~~rll~~i~~~l~~~Kn 419 (1400)
|...=--.+++|+..+||.++..+-.++- .+|+=|...+..|+.+.+ .+|++..+...+.+.|.
T Consensus 274 Ll~Np~i~lepYlh~L~PSvlTCvVsk~l~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~y~~L~~Rit~tl~k~l~D~~~ 353 (576)
T KOG2549|consen 274 LLDNPNIFLEPYLHQLVPSVLTCVVSKNLCLRPELDNHWALRDFAARLLAQICKNFSTLYNNLQPRITRTLSKALLDNKK 353 (576)
T ss_pred HhcCCccchhhHHHHHhhHHHHhhhhhhccCCccccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCCCC
Confidence 44333337899999999999988865542 367878888888887653 23555555555544433
Q ss_pred HHHHHH-HHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 420 AVLRAR-CCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 420 ~~~R~~-~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
+---.| +.--|. .|..-.....+-..++.+..-|+.-+.+.+-+
T Consensus 354 ~~st~YGai~gL~-~lg~~~I~~~ilp~L~~~~~~l~~~l~~~~~~ 398 (576)
T KOG2549|consen 354 PLSTHYGAIAGLS-ELGHEVIRTVILPNLKEYNERLQSVLDVESLS 398 (576)
T ss_pred CchhhhhHHHHHH-HhhhhhhhheeccchHHHHHHhhhhcccchhh
Confidence 332222 222221 11111111123334566666666666655544
No 176
>PF12783 Sec7_N: Guanine nucleotide exchange factor in Golgi transport N-terminal
Probab=86.26 E-value=18 Score=38.43 Aligned_cols=133 Identities=17% Similarity=0.206 Sum_probs=89.3
Q ss_pred hHHHHHHHHHHhhhc----C-CC------CCHHHHHHHHHHHHHHHhcCC---C---CchhHHHhHH-HHHHHHHhhhcc
Q 000599 279 EKELIREFEKIGSTL----V-PD------KDWSVRIAAMQRVEGLVLGGA---A---DHPCFRGLLK-QLVGPLSTQLSD 340 (1400)
Q Consensus 279 ~~dl~~~l~ki~~~l----~-~~------~dW~~R~~AL~~l~~ll~~~~---~---~~~~f~~~L~-~L~~~L~~~l~D 340 (1400)
.+|....|..+.... . +. .++..|.=+|+-|..++..++ . .++.|...++ .+...|.+.+..
T Consensus 5 ~~Da~~vf~~Lc~L~~~~~~~~~~~~~~~~~~~~k~l~LeLl~~iL~~~~~~f~~~~~~~~l~~~lk~~l~~~Ll~~~~~ 84 (168)
T PF12783_consen 5 VKDAFLVFRDLCSLSSKPSDPGNSPDFLSHDERSKLLSLELLESILENHGSVFRSSEEHPSLINLLKDDLCPALLKNLSS 84 (168)
T ss_pred HHHHHHHHHHHHHHhCCCCCCCCCcchhhhhHHHHHHHHHHHHHHHHhCHHHHhCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence 355555566555544 1 11 255788889999999998765 3 2236777665 467777777766
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhch-hhH--HHHHHHHHHHHHHHHhCCCcchHHHHHHHh
Q 000599 341 RRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVI-TVL--VIAESSDNCIKTMLRNCKAVRVLPRIADCA 414 (1400)
Q Consensus 341 lrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~-~kk--vi~~sa~~al~~i~~~~~~~rll~~i~~~l 414 (1400)
...+|...++.++..+...++..+....+.+++.++..+-+ ... -.+..+.+++. +-|.-+.++-.+..+.
T Consensus 85 ~~~~i~~~slri~~~l~~~~~~~Lk~ele~~l~~i~~~il~~~~~~~~~k~~~Le~l~---~l~~~p~~l~~lf~NY 158 (168)
T PF12783_consen 85 SDFPIFSRSLRIFLTLLSRFRSHLKLELEVFLSHIILRILESDNSSLWQKELALEILR---ELCKDPQFLVDLFVNY 158 (168)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHH---HHHhChhHHHHHHHHc
Confidence 66999999999999999999999999999999988884433 221 23333444444 4445566665555544
No 177
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=86.12 E-value=15 Score=44.00 Aligned_cols=149 Identities=16% Similarity=0.184 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCC--CchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 000599 279 EKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAA--DHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFL 356 (1400)
Q Consensus 279 ~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~--~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~L 356 (1400)
.+|+...|++|++.+.+ .+=..|.+||+.|+. ..+. -.|-|+ .-+...+...+.+ |..+....+.++..|
T Consensus 173 S~Elq~yf~~It~a~~~-~~~~~r~~aL~sL~t---D~gl~~LlPyf~---~fI~~~v~~n~~~-nl~~L~~lm~~v~AL 244 (343)
T cd08050 173 SKELQLYFEEITEALVG-SNEEKRREALQSLRT---DPGLQQLLPYFV---RFIAEGVTVNLDQ-NLALLIYLMRMVRAL 244 (343)
T ss_pred CHHHHHHHHHHHHHHhC-CCHHHHHHHHHHhcc---CCCchhhhhHHH---HHHHHHHHhhhcc-cHHHHHHHHHHHHHH
Confidence 37788889999998864 566789999998872 2111 122232 2233444444444 677777778888777
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhh
Q 000599 357 SKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEH 436 (1400)
Q Consensus 357 a~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~ 436 (1400)
...=.-..++|+..++|.++..+-.+. + +..+. + .....+|.+++..|..+.++
T Consensus 245 l~N~~l~le~Ylh~Lip~vltclv~~~--l--------------~~~~~--------~--~~h~~LRd~AA~ll~~i~~~ 298 (343)
T cd08050 245 LDNPNLHLEPYLHQLIPSVLTCLVAKQ--L--------------CSRPP--------D--DNHWALRDYAARLLAQICRK 298 (343)
T ss_pred hcCCCCchHHhHHHHHHHHHHHhhhHh--h--------------cCCCC--------C--chHHHHHHHHHHHHHHHHHH
Confidence 766666889999999999987665443 0 00000 1 22567888888888888888
Q ss_pred CCCcccccccHHHHHHHHHHHcCCCCh
Q 000599 437 WPDAPEIQRSADLYEDLIRCCVADAMS 463 (1400)
Q Consensus 437 ~~~~~~l~~~~~~l~~~i~k~l~Da~~ 463 (1400)
|+.. ...-...+...+.+.+.|.+.
T Consensus 299 f~~~--y~~l~~ri~~tl~k~l~d~~~ 323 (343)
T cd08050 299 FSTS--YNTLQPRITRTLLKALLDPKK 323 (343)
T ss_pred cCCC--CCcHHHHHHHHHHHHHcCCCC
Confidence 8764 222344466666666666654
No 178
>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]
Probab=85.93 E-value=3.6 Score=49.21 Aligned_cols=155 Identities=19% Similarity=0.198 Sum_probs=95.0
Q ss_pred HhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHH-H--------HHHhhhccCCcchHHHHHHHHHHHHHHhhhhhH
Q 000599 7 LARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLV-D--------CCLDLLKDNNFKVSQGALQSLASAAVLSGEHFK 77 (1400)
Q Consensus 7 ~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv-~--------~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~ 77 (1400)
.+.|..-|.|..|+-.+...+++.++..-+.-+..|+ | .+.-.++|.||+....||+.+..+..+...++.
T Consensus 4 ~~r~~~akvr~~al~~~~~~~~~~~~~~~ygyw~~~~pd~~~~g~p~l~~l~lkd~~~~~ra~alqv~~~~l~gsk~fls 83 (728)
T KOG4535|consen 4 KMRSYQAKVRQGALVCFLSTIKSIEKKVLYGYWSAFIPDTPELGSPSLMTLTLKDPSPKTRACALQVLSAILEGSKQFLS 83 (728)
T ss_pred chhhHHHHHHhhHHHHHHHHHhhhhhhhhhceeeeecCCCCCCCCceeeEEecCCCChhHHHHHHHHHHHHHHhhHHHHH
Confidence 3456678999999999999998876542122122222 1 112378999999999999999999877543322
Q ss_pred hhhhhhHHHHHHHhCCCCh---------hHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHh
Q 000599 78 LHFNALVPAVVERLGDAKQ---------PVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGL 148 (1400)
Q Consensus 78 ~~~~~ilp~LleKLgD~K~---------~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~ 148 (1400)
. .+-+||..- .|++.=+-.|..+..-. .|.+.-+|+.+|...+..
T Consensus 84 ~---------a~~~~~~~ftpf~v~~a~si~~~~r~l~~~l~~e~-----------------~~~~~tq~~kcla~lv~~ 137 (728)
T KOG4535|consen 84 V---------AEDTSDHAFTPFSVMIACSIRELHRCLLLALVAES-----------------SSQTVTQIIKCLANLVSN 137 (728)
T ss_pred H---------HhccCCcCCCchHHHHHHHHHHHHHHHHHHHHHhc-----------------CchhHHHHHHHHHHHHhc
Confidence 1 122333221 12322222222222122 244555566677666655
Q ss_pred ccCcch--hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 000599 149 FSATEL--TLQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1400)
Q Consensus 149 fg~~~l--~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~ 187 (1400)
-....+ .+.-++...+.+++.++|+.||-.+..+++.|-
T Consensus 138 ~p~~~l~~~~~~~~~~~ik~~i~~~d~~v~vs~l~~~~~~v 178 (728)
T KOG4535|consen 138 APYDRLKLSLLTKVWNQIKPYIRHKDVNVRVSSLTLLGAIV 178 (728)
T ss_pred CchHHHHHHHHHHHHHHHHHHhhcCCCChhhHHHHHHHHHH
Confidence 433322 233578888999999999999999988887764
No 179
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=85.47 E-value=22 Score=40.38 Aligned_cols=177 Identities=16% Similarity=0.180 Sum_probs=92.5
Q ss_pred hHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCC--CchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHH
Q 000599 279 EKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAA--DHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFL 356 (1400)
Q Consensus 279 ~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~--~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~L 356 (1400)
.+||.-.|++++..+.++.+-+.|..||..||. ..+. -.|-|+.. +.+.+.+-++++ ++...-...+-.|
T Consensus 192 sKELq~YF~kvisal~dEs~~~~r~aAl~sLr~---dsGlhQLvPYFi~f---~~eqit~Nl~nl--~~LtTv~~m~~sL 263 (450)
T COG5095 192 SKELQMYFDKVISALLDESDEQTRDAALESLRN---DSGLHQLVPYFIHF---FNEQITKNLKNL--EKLTTVVMMYSSL 263 (450)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccHHHHHHHHHHH---HHHHHHHhhhhH--HHHHHHHHHHHHH
Confidence 477777899999999888899999999998872 1111 11223222 223333333332 2222222222222
Q ss_pred HHHhhhhHHHHHHHHHHHHHHHhchhh-----HH-----HHHHHHHHHHHHHHhCC--C----cchHHHHHHHh-hhCCC
Q 000599 357 SKELLGDFEACAEMFIPVLFKLVVITV-----LV-----IAESSDNCIKTMLRNCK--A----VRVLPRIADCA-KNDRN 419 (1400)
Q Consensus 357 a~~Lg~~f~~~a~~~lp~Ll~~~~~~k-----kv-----i~~sa~~al~~i~~~~~--~----~rll~~i~~~l-~~~Kn 419 (1400)
-..---..+||+..+||.++.++--++ +- +|+-|..-++..+.+.+ + ||+..-+..+. ...|.
T Consensus 264 L~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrTllKafLD~~k~ 343 (450)
T COG5095 264 LKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRTLLKAFLDREKT 343 (450)
T ss_pred hcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHHHHHHHHhcccc
Confidence 222112559999999998887654332 22 67777777777766553 2 23333322222 11222
Q ss_pred HHHHHHHHHHHHHHHhhCCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 420 AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 420 ~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
-...--|.--+ .++........+...++.++..+.+.+...+.+
T Consensus 344 ~sT~YGalkgl-s~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~ 387 (450)
T COG5095 344 ESTQYGALKGL-SILSKEVIRTVIKPNADYYVRLVNKTLEKGNEE 387 (450)
T ss_pred cchhhhhhhhh-hhhchhheeeeeccchHHHHHHHHHHHhccchh
Confidence 11222222222 223322222234456777888888877777766
No 180
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.00 E-value=4 Score=47.25 Aligned_cols=144 Identities=17% Similarity=0.262 Sum_probs=100.1
Q ss_pred HHHHHHhcCCChHHHHHHHHHHHHHHhhcccc--ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh----
Q 000599 1215 TAVLEVLDDADSSVREVALSLINEMLKNQKDV--MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---- 1288 (1400)
Q Consensus 1215 ~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~--~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~---- 1288 (1400)
..|...++..+..++.-|...+.-|.-.-.++ +.+.=.-++|++++++.|+...|.-.|.-|++.++..+...+
T Consensus 211 pvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ 290 (550)
T KOG4224|consen 211 PVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVE 290 (550)
T ss_pred hhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHh
Confidence 46778888889999999998888777654333 333333489999999999999999999999999997766643
Q ss_pred --HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHH-HHHHHHHHHHHHHH
Q 000599 1289 --CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSAD-VRKTVVFCLVDIYI 1359 (1400)
Q Consensus 1289 --~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~se-VRkaAv~~lv~~~~ 1359 (1400)
-+|.+..++++.-.|--++.+-|+..+.-+=.-+.+-. =.-++-.|++-+.-.+.| +.-+|+-+|+.+..
T Consensus 291 ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 291 AGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred cCCchHHHHHHhCcchhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 67777788877666655555555544432222122211 123445567777777777 88899999888765
No 181
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=84.96 E-value=3.8 Score=44.53 Aligned_cols=78 Identities=12% Similarity=0.141 Sum_probs=61.5
Q ss_pred hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHH
Q 000599 116 TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFR 195 (1400)
Q Consensus 116 ~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~ 195 (1400)
|.-++.+++ ..-+.+..+|..++..|..+++ .|.. +. +.++|.++.+..|+|+.||+.|..++.+++...+.-+.
T Consensus 7 Qryl~~Il~-~~~~~~~~vr~~Al~~l~~il~-qGLv--nP-~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~~s~v~ 81 (187)
T PF12830_consen 7 QRYLKNILE-LCLSSDDSVRLAALQVLELILR-QGLV--NP-KQCVPTLIALETSPNPSIRSRAYQLLKELHEKHESLVE 81 (187)
T ss_pred HHHHHHHHH-HHhCCCHHHHHHHHHHHHHHHh-cCCC--Ch-HHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHhHHHHH
Confidence 345666676 6778899999999998866654 6652 34 68999999999999999999999999999977666554
Q ss_pred Hhh
Q 000599 196 DEL 198 (1400)
Q Consensus 196 ~~L 198 (1400)
..+
T Consensus 82 ~~~ 84 (187)
T PF12830_consen 82 SRY 84 (187)
T ss_pred HHH
Confidence 433
No 182
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.92 E-value=15 Score=46.84 Aligned_cols=172 Identities=20% Similarity=0.190 Sum_probs=101.0
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhccCCh--HhH----------------------------HHHHHHHHh---hhccCC
Q 000599 8 ARAKDTKERMAGVERLHQLLEASRKSLTS--AEV----------------------------TSLVDCCLD---LLKDNN 54 (1400)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~--~~~----------------------------~~lv~~l~~---~l~DsN 54 (1400)
+.+.+--.|.+|+.-|.+.....+..+.+ .++ ..+++-+.. -+.|-+
T Consensus 291 lssp~~~lRfaAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeF 370 (865)
T KOG1078|consen 291 LSSPKVALRFAAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEF 370 (865)
T ss_pred hcCcHHHHHHHHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccc
Confidence 34566677888888888887665433221 112 222222222 344566
Q ss_pred cchHHHHHHHHHHHHHH------------hh----hhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhH-
Q 000599 55 FKVSQGALQSLASAAVL------------SG----EHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTI- 117 (1400)
Q Consensus 55 ~~V~~~aL~~l~~l~~~------------l~----~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~- 117 (1400)
-.|...|+..|+....+ ++ =.|++++-.++-.+++---|+| +.+..-|..++|-|-...
T Consensus 371 Kivvvdai~sLc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsK----e~~L~~LCefIEDce~~~i 446 (865)
T KOG1078|consen 371 KIVVVDAIRSLCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSK----ERGLEHLCEFIEDCEFTQI 446 (865)
T ss_pred eEEeHHHHHHHHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchh----hHHHHHHHHHHHhccchHH
Confidence 66777777777754432 11 1345555555555555555555 677778888887544333
Q ss_pred ---HHHHHhhhhhhcCC----------------hhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHH
Q 000599 118 ---IVERAGSYAWTHRS----------------WRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREA 178 (1400)
Q Consensus 118 ---V~e~l~~~~~~~Kn----------------pkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~a 178 (1400)
++..+...|-+.+| ..||.+...+| -.||...-.+...+.-.+.+|+.|++.+||+.
T Consensus 447 ~~rILhlLG~EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~al----aKfg~~~~~l~~sI~vllkRc~~D~DdevRdr 522 (865)
T KOG1078|consen 447 AVRILHLLGKEGPKAPNPSKYIRFIYNRVILENAIVRAAAVSAL----AKFGAQDVVLLPSILVLLKRCLNDSDDEVRDR 522 (865)
T ss_pred HHHHHHHHhccCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHH----HHHhcCCCCccccHHHHHHHHhcCchHHHHHH
Confidence 33333333444444 34666665555 45775444332456666689999999999999
Q ss_pred HHHHHHHHH
Q 000599 179 AILCIEEMY 187 (1400)
Q Consensus 179 A~~~l~~l~ 187 (1400)
|.-.+..+-
T Consensus 523 Atf~l~~l~ 531 (865)
T KOG1078|consen 523 ATFYLKNLE 531 (865)
T ss_pred HHHHHHHhh
Confidence 998888776
No 183
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=84.37 E-value=93 Score=41.00 Aligned_cols=106 Identities=17% Similarity=0.217 Sum_probs=75.5
Q ss_pred HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhch-hhHHHHHHHHHHHHHHHHhC--CCcchHHHHHHHhhhCCCHH
Q 000599 345 IVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVI-TVLVIAESSDNCIKTMLRNC--KAVRVLPRIADCAKNDRNAV 421 (1400)
Q Consensus 345 Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~-~kkvi~~sa~~al~~i~~~~--~~~rll~~i~~~l~~~Kn~~ 421 (1400)
|-.++..|++.|+-+- +..++.+||.|.+-+.- ...-+|.....++.-|+-+. -..+.+|.|...+. +-.+-
T Consensus 947 vra~~vvTlakmcLah----~~LaKr~~P~lvkeLe~~~~~aiRnNiV~am~D~C~~YTam~d~YiP~I~~~L~-Dp~~i 1021 (1529)
T KOG0413|consen 947 VRAVGVVTLAKMCLAH----DRLAKRLMPMLVKELEYNTAHAIRNNIVLAMGDICSSYTAMTDRYIPMIAASLC-DPSVI 1021 (1529)
T ss_pred HHHHHHHHHHHHHhhh----hHHHHHHHHHHHHHHHhhhHHHHhcceeeeehhhHHHHHHHHHHhhHHHHHHhc-CchHH
Confidence 3456777888776443 55788889988887753 34557777777777776555 34799999999994 66999
Q ss_pred HHHHHHHHHHHHHhh----CCCcccccccHHHHHHHHHHHcCCCChH
Q 000599 422 LRARCCEYALLVLEH----WPDAPEIQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 422 ~R~~~~~~L~~~L~~----~~~~~~l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
+|++++..|.++|+. |.-. .+.. +.-.+-|++++
T Consensus 1022 VRrqt~ilL~rLLq~~~vKw~G~--------Lf~R-f~l~l~D~~ed 1059 (1529)
T KOG0413|consen 1022 VRRQTIILLARLLQFGIVKWNGE--------LFIR-FMLALLDANED 1059 (1529)
T ss_pred HHHHHHHHHHHHHhhhhhhcchh--------hHHH-HHHHHcccCHH
Confidence 999999999999875 4321 2232 23456789988
No 184
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=84.34 E-value=3.7 Score=40.80 Aligned_cols=68 Identities=16% Similarity=0.287 Sum_probs=38.8
Q ss_pred HHHhhhhhcc-CCchhhHhHHHHHHHHHHhhcCH--HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1289 CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQ--EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1289 ~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~~~--~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
+++.|..+|. +.+..+...|+.=|+.++..+|. ..+.. + ..-+.|.+.|.|.+++||+.|..|+=.+.
T Consensus 44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~-l-g~K~~vM~Lm~h~d~eVr~eAL~avQklm 114 (119)
T PF11698_consen 44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEK-L-GAKERVMELMNHEDPEVRYEALLAVQKLM 114 (119)
T ss_dssp HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHH-H-SHHHHHHHHTS-SSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHh-c-ChHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 4555555552 23334444555556666655542 11211 1 13456788899999999999999976654
No 185
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=83.63 E-value=9.2 Score=37.50 Aligned_cols=90 Identities=16% Similarity=0.213 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHHHHHhcCCC---hH-HHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000599 1206 WTKYFNQILTAVLEVLDDAD---SS-VREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1281 (1400)
Q Consensus 1206 ~~~~f~~ll~~Ll~~l~d~~---~~-vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~ 1281 (1400)
+.+||=.|+..+-+.+.|.+ +. .+..+++.+.+|.+..+..+..+...++-.|..+... ++.+..|-.|-..++
T Consensus 5 L~~~~LGil~~f~~~l~d~~g~~~~~ek~~~i~ai~~lI~~~g~~i~~a~pQI~acL~saL~~--~eL~~~al~~W~~~i 82 (107)
T smart00802 5 LKDHFLGILAVFSNILHDSSGKKPYNEKKRALRSIGFLIKLMGKHISSALPQIMACLQSALEI--PELRSLALRCWHVLI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHcCcccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc--hhHHHHHHHHHHHHH
Confidence 44677777888888888754 33 6889999999999965544444444444444444544 579999999999999
Q ss_pred hhcChhhHHHhhhhhc
Q 000599 1282 SQYDPFRCLSVIVPLL 1297 (1400)
Q Consensus 1282 ~~~~p~~~l~~l~~~l 1297 (1400)
..++++.+-+++...+
T Consensus 83 ~~L~~~~l~~ll~~~~ 98 (107)
T smart00802 83 KTLKEEELGPLLDQIF 98 (107)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 9999887776665544
No 186
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=83.49 E-value=21 Score=45.62 Aligned_cols=168 Identities=14% Similarity=0.178 Sum_probs=109.8
Q ss_pred CCHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhc-C-CChHHHHHHHHHHHHHHhhcc
Q 000599 1167 PSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLD-D-ADSSVREVALSLINEMLKNQK 1244 (1400)
Q Consensus 1167 ~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~-d-~~~~vR~~aL~~L~~l~~~~~ 1244 (1400)
+.|..|.+.+..+.- .++|++|+..|-.+.+.-.-.+.....+ .|+..|. | .|+.+...+|.+|--++.+-.
T Consensus 22 ETI~kLcDRvessTL--~eDRR~A~rgLKa~srkYR~~Vga~Gmk----~li~vL~~D~~D~E~ik~~LdTl~il~~~dd 95 (970)
T KOG0946|consen 22 ETIEKLCDRVESSTL--LEDRRDAVRGLKAFSRKYREEVGAQGMK----PLIQVLQRDYMDPEIIKYALDTLLILTSHDD 95 (970)
T ss_pred hHHHHHHHHHhhccc--hhhHHHHHHHHHHHHHHHHHHHHHcccH----HHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence 446777777766653 5899999999998888654444333333 5555553 2 355555556666555544321
Q ss_pred ccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHH
Q 000599 1245 DVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEEL 1324 (1400)
Q Consensus 1245 ~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l 1324 (1400)
+ | +...|+ +.+..-+...+..++ .-...|..+...+...++.+|+.++++++.++...|++ +
T Consensus 96 --~--------~---~v~dds-~qsdd~g~~iae~fi---k~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e-~ 157 (970)
T KOG0946|consen 96 --S--------P---EVMDDS-TQSDDLGLWIAEQFI---KNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTE-L 157 (970)
T ss_pred --c--------h---hhcccc-hhhhHHHHHHHHHHH---cCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHH-H
Confidence 0 0 112233 233344444444443 33557777788888889999999999999999888854 3
Q ss_pred Hh---hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1325 MA---QLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1325 ~~---~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
.. ..|.=|-.+..-++|.---+|..|+.-+.++.
T Consensus 158 q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~ 194 (970)
T KOG0946|consen 158 QDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELV 194 (970)
T ss_pred HHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHH
Confidence 33 34777778888889999999999998876665
No 187
>PF08064 UME: UME (NUC010) domain; InterPro: IPR012993 This domain is characteristic of UVSB PI-3 kinase, MEI-41 and ESR1 [].; GO: 0004674 protein serine/threonine kinase activity
Probab=82.72 E-value=11 Score=37.04 Aligned_cols=90 Identities=18% Similarity=0.214 Sum_probs=62.1
Q ss_pred HHHHHHHHHHHHHHHhcC---CCh-HHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000599 1206 WTKYFNQILTAVLEVLDD---ADS-SVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1281 (1400)
Q Consensus 1206 ~~~~f~~ll~~Ll~~l~d---~~~-~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~ 1281 (1400)
+.+||=.|+..+-+.+.| +.+ ..+..+++.|.+|.+-.+..+..+...++-.|..+...+ +.+..|-+|-..++
T Consensus 5 L~~~~Lgil~~f~~~l~d~~~~~~~~ek~~~l~si~~lI~~~~~~i~~~~pQI~a~L~sal~~~--~l~~~al~~W~~fi 82 (107)
T PF08064_consen 5 LQPHILGILTRFSDVLNDLRGKKPIPEKKRALRSIEELIKLGGSHISSARPQIMACLQSALEIP--ELREEALSCWNCFI 82 (107)
T ss_pred HHHHHHHHHHHHHHHHhccccCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhCCh--hhHHHHHHHHHHHH
Confidence 335666677777777776 333 388899999999999434444444444444444454554 88889999999999
Q ss_pred hhcChhhHHHhhhhhc
Q 000599 1282 SQYDPFRCLSVIVPLL 1297 (1400)
Q Consensus 1282 ~~~~p~~~l~~l~~~l 1297 (1400)
..++++.+-+++...+
T Consensus 83 ~~L~~~~l~~ll~~~~ 98 (107)
T PF08064_consen 83 KTLDEEDLGPLLDQIF 98 (107)
T ss_pred HHCCHHHHHHHHHHHH
Confidence 9999887777665544
No 188
>KOG2549 consensus Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=82.64 E-value=12 Score=46.20 Aligned_cols=161 Identities=16% Similarity=0.145 Sum_probs=96.8
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhcc--------CCcchHHHHHHHHHHHHHHh
Q 000599 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKD--------NNFKVSQGALQSLASAAVLS 72 (1400)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~D--------sN~~V~~~aL~~l~~l~~~l 72 (1400)
|+++.+.+.+.|-+.|.+|++.|.+-- .++.|+-.+..++.| .|.......+..+..|.++=
T Consensus 209 y~~It~a~~g~~~~~r~eAL~sL~TDs----------GL~~LlPyFv~fIae~vs~ni~~~nL~lL~~lm~m~rSLl~Np 278 (576)
T KOG2549|consen 209 YKEITEACTGSDEPLRQEALQSLETDS----------GLQQLLPYFVTFIAEGVSVNIVQNNLELLIYLMRMVRSLLDNP 278 (576)
T ss_pred HHHHHHHHhcCCHHHHHHHHHhhccCc----------cHHHHHHHHHHHHhhheeeccccccHHHHHHHHHHHHHHhcCC
Confidence 457788888899999999999984331 233333333333332 34444444455555554432
Q ss_pred hhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCc
Q 000599 73 GEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSAT 152 (1400)
Q Consensus 73 ~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~ 152 (1400)
.=++.+|+..++|.++..+-.++- +..-..+..|-+|--...++..++..|+..
T Consensus 279 ~i~lepYlh~L~PSvlTCvVsk~l--------------------------~~~p~~dnhwaLRDfAA~ll~~i~k~f~~~ 332 (576)
T KOG2549|consen 279 NIFLEPYLHQLVPSVLTCVVSKNL--------------------------CLRPELDNHWALRDFAARLLAQICKNFSTL 332 (576)
T ss_pred ccchhhHHHHHhhHHHHhhhhhhc--------------------------cCCccccchHHHHHHHHHHHHHHHHhhhhH
Confidence 335789999999998866544331 111255666888887788888888888876
Q ss_pred chhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhh
Q 000599 153 ELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDEL 198 (1400)
Q Consensus 153 ~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L 198 (1400)
.-+++.-++..+.+.|.|.... =..=+.++.-|+.+.++.++..|
T Consensus 333 y~~L~~Rit~tl~k~l~D~~~~-~st~YGai~gL~~lg~~~I~~~i 377 (576)
T KOG2549|consen 333 YNNLQPRITRTLSKALLDNKKP-LSTHYGAIAGLSELGHEVIRTVI 377 (576)
T ss_pred HHHHHHHHHHHHHHHhcCCCCC-chhhhhHHHHHHHhhhhhhhhee
Confidence 6566556888888888876432 11222333333333444454444
No 189
>KOG1087 consensus Cytosolic sorting protein GGA2/TOM1 [Intracellular trafficking, secretion, and vesicular transport]
Probab=82.31 E-value=5.9 Score=48.75 Aligned_cols=98 Identities=20% Similarity=0.208 Sum_probs=65.9
Q ss_pred HHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhh--hhhh
Q 000599 6 ELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH--FNAL 83 (1400)
Q Consensus 6 ~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~--~~~i 83 (1400)
+.|..-||-.-++ |.+++.... ....+.++.|++.+.+.|.+|+..||.+|..++++||..|... -..|
T Consensus 12 ~~l~~pDWa~Nle----IcD~IN~~~-----~~~~eAvralkKRi~~k~s~vq~lALtlLE~cvkNCG~~fh~~Va~k~f 82 (470)
T KOG1087|consen 12 ESLAEPDWALNLE----ICDLINSTE-----GGPKEAVRALKKRLNSKNSKVQLLALTLLETCVKNCGYSFHLQVASKEF 82 (470)
T ss_pred ccccCccHHHHHH----HHHHHhcCc-----cCcHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 3456678877664 444443321 1223788899999999999999999999999999999988754 3356
Q ss_pred HHHHHHHhCCC--ChhHHHHHHHHHHHHHHH
Q 000599 84 VPAVVERLGDA--KQPVRDAARRLLLTLMEV 112 (1400)
Q Consensus 84 lp~LleKLgD~--K~~vre~a~~~L~~l~e~ 112 (1400)
++-+|.+.... -..||+.+..+|..|.+.
T Consensus 83 L~emVk~~k~~~~~~~Vr~kiL~LI~~W~~a 113 (470)
T KOG1087|consen 83 LNEMVKRPKNKPRDLKVREKILELIDTWQQA 113 (470)
T ss_pred HHHHHhccccCCcchhHHHHHHHHHHHHHHH
Confidence 66655554332 233666666666665543
No 190
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=81.98 E-value=20 Score=47.98 Aligned_cols=155 Identities=16% Similarity=0.132 Sum_probs=98.5
Q ss_pred CCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHh-CCCChhHHHHHHHHHHHHHHHhc--hhHHHHHHhhhhhhc
Q 000599 53 NNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL-GDAKQPVRDAARRLLLTLMEVSS--PTIIVERAGSYAWTH 129 (1400)
Q Consensus 53 sN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKL-gD~K~~vre~a~~~L~~l~e~~~--p~~V~e~l~~~~~~~ 129 (1400)
+|+.++.+|--+|+.+.--.. .+...-+|.++.-+ +.+.+.||..+.-+|-.|+-+.. .+...+.++. -+..
T Consensus 935 sdp~Lq~AAtLaL~klM~iSa----~fces~l~llftimeksp~p~IRsN~VvalgDlav~fpnlie~~T~~Ly~-rL~D 1009 (1251)
T KOG0414|consen 935 SDPELQAAATLALGKLMCISA----EFCESHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPNLIEPWTEHLYR-RLRD 1009 (1251)
T ss_pred CCHHHHHHHHHHHHHHhhhhH----HHHHHHHHHHHHHHhcCCCceeeecchheccchhhhcccccchhhHHHHH-HhcC
Confidence 456677777666666653322 33334455555555 35566688888887777764321 2344555664 6788
Q ss_pred CChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC------hhHHHhhhcCCC
Q 000599 130 RSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG------PQFRDELHRHNL 203 (1400)
Q Consensus 130 Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G------~~l~~~L~~~~l 203 (1400)
-++-||..++..|.-.|-. .-+.+ |-.++....|+.|+|+.||+-|..++-+|-.... +++.-.|.+.++
T Consensus 1010 ~~~~vRkta~lvlshLILn---dmiKV-KGql~eMA~cl~D~~~~IsdlAk~FF~Els~k~n~iynlLPdil~~Ls~~~l 1085 (1251)
T KOG0414|consen 1010 ESPSVRKTALLVLSHLILN---DMIKV-KGQLSEMALCLEDPNAEISDLAKSFFKELSSKGNTIYNLLPDILSRLSNGNL 1085 (1251)
T ss_pred ccHHHHHHHHHHHHHHHHh---hhhHh-cccHHHHHHHhcCCcHHHHHHHHHHHHHhhhcccchhhhchHHHHhhccCcc
Confidence 8999999998888765532 12334 7788999999999999999999999998875532 223333333345
Q ss_pred ChhhHHHHHHHHH
Q 000599 204 PNSMVKDINARLE 216 (1400)
Q Consensus 204 ~~~~l~~i~~~~~ 216 (1400)
.....+.|.+.+-
T Consensus 1086 ~~~~~~~vm~~li 1098 (1251)
T KOG0414|consen 1086 EEESYKTVMEFLI 1098 (1251)
T ss_pred cchhhHHHHHHHH
Confidence 4444444444443
No 191
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.56 E-value=33 Score=41.46 Aligned_cols=142 Identities=18% Similarity=0.279 Sum_probs=86.4
Q ss_pred HhcCCChHHHHHHHHHHHHHHhhccc--cccc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh--cC---hhhHHH
Q 000599 1220 VLDDADSSVREVALSLINEMLKNQKD--VMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ--YD---PFRCLS 1291 (1400)
Q Consensus 1220 ~l~d~~~~vR~~aL~~L~~l~~~~~~--~~~~-~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~--~~---p~~~l~ 1291 (1400)
.+.|. ..||..|++++++++..... .+.. .+..++..-|+.-. +...=+..|-..++.++.. -+ |..++.
T Consensus 34 lL~~~-~~vraa~yRilRy~i~d~~~l~~~~~l~id~~ii~SL~~~~-~~~~ER~QALkliR~~l~~~~~~~~~~~~vvr 111 (371)
T PF14664_consen 34 LLSDS-KEVRAAGYRILRYLISDEESLQILLKLHIDIFIIRSLDRDN-KNDVEREQALKLIRAFLEIKKGPKEIPRGVVR 111 (371)
T ss_pred HCCCc-HHHHHHHHHHHHHHHcCHHHHHHHHHcCCchhhHhhhcccC-CChHHHHHHHHHHHHHHHhcCCcccCCHHHHH
Confidence 44444 78999999999999986432 1222 24444444444322 2223366788888888876 22 556888
Q ss_pred hhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhh
Q 000599 1292 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYL 1369 (1400)
Q Consensus 1292 ~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l 1369 (1400)
.|..+....+.+-+..|++.|..+. -..++.+..+ .-+..|.+++-|...++-.+ ++..+...+.. .-++|+
T Consensus 112 alvaiae~~~D~lr~~cletL~El~-l~~P~lv~~~--gG~~~L~~~l~d~~~~~~~~---l~~~lL~lLd~p~tR~yl 184 (371)
T PF14664_consen 112 ALVAIAEHEDDRLRRICLETLCELA-LLNPELVAEC--GGIRVLLRALIDGSFSISES---LLDTLLYLLDSPRTRKYL 184 (371)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHHH-hhCHHHHHHc--CCHHHHHHHHHhccHhHHHH---HHHHHHHHhCCcchhhhh
Confidence 8888888888888999999999888 4444555332 12456666666644443333 44444445544 344433
No 192
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=81.45 E-value=22 Score=42.94 Aligned_cols=166 Identities=14% Similarity=0.239 Sum_probs=105.0
Q ss_pred hHHHHHHHHHHHHHhcCC-hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccc--cHHHHHHHHHHH
Q 000599 1185 TSKHGALQQLIKASVAND-HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED--SVEIVIEKLLHV 1261 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~-~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~--~~e~~l~~ll~~ 1261 (1400)
.||..|++=++.++.-.+ ...+ =..+.+.+..+..+.+-..|..|+.+|.||+-..+.-+.. .+..++. .
T Consensus 83 ~ER~QALkliR~~l~~~~~~~~~---~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~lv~~~gG~~~L~~----~ 155 (371)
T PF14664_consen 83 VEREQALKLIRAFLEIKKGPKEI---PRGVVRALVAIAEHEDDRLRRICLETLCELALLNPELVAECGGIRVLLR----A 155 (371)
T ss_pred HHHHHHHHHHHHHHHhcCCcccC---CHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHHHHHcCCHHHHHH----H
Confidence 699999999999988743 2221 2456678888888877778999999999999876655432 2444444 4
Q ss_pred hcCCcHHHHHHHHHHHHHHHhh------cChh-hHHHhhhhhccC-----Cch---hhHhHHHHHHHHHHhhcCHHHHHh
Q 000599 1262 TKDAVPKVSNEAEHCLTVVLSQ------YDPF-RCLSVIVPLLVT-----EDE---KTLVTCINCLTKLVGRLSQEELMA 1326 (1400)
Q Consensus 1262 ~~D~~k~V~~aA~~al~~i~~~------~~p~-~~l~~l~~~l~s-----~~~---~~~~~alk~l~~lv~~~~~~~l~~ 1326 (1400)
+.|..-++......++-.++.. +.+. .+=.+++|+... ++. .....|-+.+..++..|+ ..+.-
T Consensus 156 l~d~~~~~~~~l~~~lL~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~-GLl~l 234 (371)
T PF14664_consen 156 LIDGSFSISESLLDTLLYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWP-GLLYL 234 (371)
T ss_pred HHhccHhHHHHHHHHHHHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCC-ceeee
Confidence 4443223444444444444322 1111 122233444432 111 345667888899999998 44433
Q ss_pred hhh--hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1327 QLP--SFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1327 ~l~--~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
+.+ .-+..|+.++..+..++|+....-+..+.
T Consensus 235 ~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dll 268 (371)
T PF14664_consen 235 SMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLL 268 (371)
T ss_pred ecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHH
Confidence 333 35677899999999999999998865554
No 193
>PF08161 NUC173: NUC173 domain; InterPro: IPR012978 This is the central domain of a novel family of hypothetical nucleolar proteins [].
Probab=80.85 E-value=6.2 Score=43.22 Aligned_cols=108 Identities=12% Similarity=0.065 Sum_probs=79.3
Q ss_pred HHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHhh-hCCCHHH
Q 000599 344 SIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAK-NDRNAVL 422 (1400)
Q Consensus 344 ~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l~-~~Kn~~~ 422 (1400)
....+.+.+++.+.+.+|....++...++..|-++-.+..-..++.+..|+.+.+++.++..++..+--.+. .++...
T Consensus 15 ~aw~~vl~v~s~lf~~lg~~~~~~l~~~L~~l~~lr~~~~f~~~~~~e~~lgaAi~amGpe~vL~~lPLnl~~~~~~~~- 93 (198)
T PF08161_consen 15 HAWPEVLNVLSALFEKLGERSSPLLKPILKTLGDLRESEDFSFRKELEQVLGAAIRAMGPEQVLSILPLNLDNADDSQP- 93 (198)
T ss_pred HHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHHHCCHHHHHHHCCCCccCCCcCCc-
Confidence 466788999999999999999999888998888888877778899999999999999999988876654442 122222
Q ss_pred HHHHHHHHHHHHhhCCCcccccccHHHHHHHHH
Q 000599 423 RARCCEYALLVLEHWPDAPEIQRSADLYEDLIR 455 (1400)
Q Consensus 423 R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~ 455 (1400)
.-.||.-+|+.+.....+.-..+.+.+.++
T Consensus 94 ---~raWLLPlLr~~i~~~~L~fF~~~~lPla~ 123 (198)
T PF08161_consen 94 ---GRAWLLPLLRDHIRNASLSFFVEEFLPLAR 123 (198)
T ss_pred ---ccchhHHHHHHhccCCChHHHHHHHHHHHH
Confidence 235777777766433345444455554444
No 194
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=80.78 E-value=1.4e+02 Score=36.16 Aligned_cols=95 Identities=14% Similarity=0.207 Sum_probs=55.2
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC------CCch---hHHHhHHH-HHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHH
Q 000599 296 DKDWSVRIAAMQRVEGLVLGGA------ADHP---CFRGLLKQ-LVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFE 365 (1400)
Q Consensus 296 ~~dW~~R~~AL~~l~~ll~~~~------~~~~---~f~~~L~~-L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~ 365 (1400)
..||+.+-.||--+.++..-+. .+.. ++.+.+.. +..-|. .-.+...-+-..||.++..+...+. .
T Consensus 266 ~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~-~~~~~~piLka~aik~~~~Fr~~l~---~ 341 (370)
T PF08506_consen 266 SNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ-PDVNSHPILKADAIKFLYTFRNQLP---K 341 (370)
T ss_dssp TT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH--SS-S-HHHHHHHHHHHHHHGGGS----H
T ss_pred cccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc-ccCCCCcchHHHHHHHHHHHHhhCC---H
Confidence 4689888888888888775432 1111 11111111 122222 1112333455667888887766554 3
Q ss_pred HHHHHHHHHHHHHhchhhHHHHHHHHHHH
Q 000599 366 ACAEMFIPVLFKLVVITVLVIAESSDNCI 394 (1400)
Q Consensus 366 ~~a~~~lp~Ll~~~~~~kkvi~~sa~~al 394 (1400)
.....++|.|++.+++..-|+.+-|..||
T Consensus 342 ~~l~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 342 EQLLQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 46777999999999999999998887775
No 195
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.74 E-value=22 Score=42.53 Aligned_cols=150 Identities=21% Similarity=0.206 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHHHh----cCCcHHHHHHHHHHHHHHHh---
Q 000599 1211 NQILTAVLEVLDDADSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLHVT----KDAVPKVSNEAEHCLTVVLS--- 1282 (1400)
Q Consensus 1211 ~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~-~~~~~~~e~~l~~ll~~~----~D~~k~V~~aA~~al~~i~~--- 1282 (1400)
+.+...+..-++|+++.+|..-+..+.+++.... .....+++.++|.+++.+ .++........-.|+-.++.
T Consensus 60 ~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~ 139 (339)
T PF12074_consen 60 KKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSS 139 (339)
T ss_pred HHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhcc
Confidence 5566688889999988899988888888887222 236677888888888766 45544333211222222222
Q ss_pred ----------------hcChhh-HH---HhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000599 1283 ----------------QYDPFR-CL---SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1283 ----------------~~~p~~-~l---~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~ 1342 (1400)
...|.. ++ +++.-+. ......-+++.+..++..+...........+--+++-.+-++
T Consensus 140 ~~~~~~~~~~~~~~~l~~~~kps~ll~~kvyskl~---~~~d~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~ 216 (339)
T PF12074_consen 140 WKLDKIDSKNISFWSLALDPKPSFLLSEKVYSKLA---SEEDLCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSS 216 (339)
T ss_pred ccchhhhhhhhhhhhhccCCCcchhcCHHHHhccC---CHhHHHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcC
Confidence 111111 00 1111111 122234456666666655553222222233445566777777
Q ss_pred --CHHHHHHHHHHHHHHHHHhhh
Q 000599 1343 --SADVRKTVVFCLVDIYIMLGK 1363 (1400)
Q Consensus 1343 --~seVRkaAv~~lv~~~~~lge 1363 (1400)
..+||+.|..++-.+|..-+.
T Consensus 217 ~~~~~vR~~A~~~l~~l~~~~~~ 239 (339)
T PF12074_consen 217 NVSWKVRRAALSALKKLYASNPE 239 (339)
T ss_pred CCCHHHHHHHHHHHHHHHHhChH
Confidence 999999999999998875443
No 196
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.65 E-value=20 Score=45.99 Aligned_cols=175 Identities=14% Similarity=0.109 Sum_probs=107.2
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhh
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNAL 83 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~i 83 (1400)
+-.++.++.-+.|.+|+..+...+.-. .|+..++.-+.+.+.-.|..+-...-.-+..++.. .. ......
T Consensus 18 lks~l~s~~~~kr~~a~kkvIa~Mt~G------~DvSslF~dvvk~~~T~dlelKKlvyLYl~nYa~~---~P-~~a~~a 87 (734)
T KOG1061|consen 18 LKSQLNSQSKEKRKDAVKKVIAYMTVG------KDVSSLFPDVVKCMQTRDLELKKLVYLYLMNYAKG---KP-DLAILA 87 (734)
T ss_pred HHHHhhhhhhhhHHHHHHHHHhcCccC------cchHhhhHHHHhhcccCCchHHHHHHHHHHHhhcc---Cc-hHHHhh
Confidence 334455444478888888776665432 33444444444444444432222222223322211 11 123456
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHH
Q 000599 84 VPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPP 163 (1400)
Q Consensus 84 lp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~ 163 (1400)
++.++.-++|.++-+|.-|...+..+--..--+.+++.+.. ++++++|-||.....++..... .+.....- ..+++.
T Consensus 88 vnt~~kD~~d~np~iR~lAlrtm~~l~v~~i~ey~~~Pl~~-~l~d~~~yvRktaa~~vakl~~-~~~~~~~~-~gl~~~ 164 (734)
T KOG1061|consen 88 VNTFLKDCEDPNPLIRALALRTMGCLRVDKITEYLCDPLLK-CLKDDDPYVRKTAAVCVAKLFD-IDPDLVED-SGLVDA 164 (734)
T ss_pred hhhhhccCCCCCHHHHHHHhhceeeEeehHHHHHHHHHHHH-hccCCChhHHHHHHHHHHHhhc-CChhhccc-cchhHH
Confidence 77788889999999998887766554211112355666665 8999999999877666654432 22222222 368899
Q ss_pred HHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 164 ILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 164 l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
+..++.|+|+.|-..|...|-+|.....
T Consensus 165 L~~ll~D~~p~VVAnAlaaL~eI~e~~~ 192 (734)
T KOG1061|consen 165 LKDLLSDSNPMVVANALAALSEIHESHP 192 (734)
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999999987653
No 197
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=80.61 E-value=27 Score=46.38 Aligned_cols=150 Identities=16% Similarity=0.149 Sum_probs=103.9
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHh--hcC
Q 000599 1210 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLS--QYD 1285 (1400)
Q Consensus 1210 f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~--D~~k~V~~aA~~al~~i~~--~~~ 1285 (1400)
...++..|+..+.|+++.||+.|...+..|..+++..+ ++.++-.+++... ++ ...=.-|.-++.-++. .+.
T Consensus 339 vE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~L---ad~vi~svid~~~p~e~-~~aWHgacLaLAELA~rGlLl 414 (1133)
T KOG1943|consen 339 VEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPEL---ADQVIGSVIDLFNPAED-DSAWHGACLALAELALRGLLL 414 (1133)
T ss_pred HHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHH---HHHHHHHHHHhcCcCCc-hhHHHHHHHHHHHHHhcCCcc
Confidence 45566689999999999999999999999999888333 4445555665332 22 2233344444444443 366
Q ss_pred hhh---HHHhhhhhcc--------CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHH-HHHhcCCCHHHHHHHHHH
Q 000599 1286 PFR---CLSVIVPLLV--------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPAL-FEAFGNQSADVRKTVVFC 1353 (1400)
Q Consensus 1286 p~~---~l~~l~~~l~--------s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l-~~~~~d~~seVRkaAv~~ 1353 (1400)
|.. ++++|.-.|. +..-.+|=+|+=+.=.+...+.+..+.+.+..+.++| ..++=|++--+|.||--+
T Consensus 415 ps~l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevncRRAAsAA 494 (1133)
T KOG1943|consen 415 PSLLEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNCRRAASAA 494 (1133)
T ss_pred hHHHHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhHhHHHHHH
Confidence 654 4444444332 2344577788888889999999999999999888875 467789999999999988
Q ss_pred HHHHHHHhhh
Q 000599 1354 LVDIYIMLGK 1363 (1400)
Q Consensus 1354 lv~~~~~lge 1363 (1400)
+-..-+..||
T Consensus 495 lqE~VGR~~n 504 (1133)
T KOG1943|consen 495 LQENVGRQGN 504 (1133)
T ss_pred HHHHhccCCC
Confidence 6555544443
No 198
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.96 E-value=43 Score=42.41 Aligned_cols=140 Identities=19% Similarity=0.181 Sum_probs=93.4
Q ss_pred hhhccCCcchHHHHHHHHHHHHHHhhhhh-HhhhhhhHH----HHHHHhCCCChhHHHHHHH----HHHHHHHHhchhHH
Q 000599 48 DLLKDNNFKVSQGALQSLASAAVLSGEHF-KLHFNALVP----AVVERLGDAKQPVRDAARR----LLLTLMEVSSPTII 118 (1400)
Q Consensus 48 ~~l~DsN~~V~~~aL~~l~~l~~~l~~~~-~~~~~~ilp----~LleKLgD~K~~vre~a~~----~L~~l~e~~~p~~V 118 (1400)
..++-.|..|...|+..+-.+..--+.+. +..+..++. -+.+-|.|.=+.||..|.. +.-.+||.+.|..+
T Consensus 181 R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~~i~ 260 (1005)
T KOG1949|consen 181 RGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPPTIL 260 (1005)
T ss_pred HhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCHHHH
Confidence 56778999999999998887764333222 122222222 2444467878888877655 44556777755444
Q ss_pred HH---HHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 119 VE---RAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 119 ~e---~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
.+ .+..........-||..+.+.|...+ +.+..+++.+.++|.+-..|.|....||-|+..+|..|..+
T Consensus 261 ~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l--~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 261 IDLLKKITDELAFDTSSDVRCSVFKGLPMIL--DNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHhhhccchheehhHhcCcHHHH--cCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 33 33332333444578888877776654 44555665588999999999999999999999999988644
No 199
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=79.66 E-value=21 Score=44.05 Aligned_cols=183 Identities=16% Similarity=0.196 Sum_probs=102.3
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHH---hcCC-hhhHHHHHHHHHHHHHHHhcCCChH----HHHHHHHHHHHH
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKAS---VAND-HSIWTKYFNQILTAVLEVLDDADSS----VREVALSLINEM 1239 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l---~~~~-~~~~~~~f~~ll~~Ll~~l~d~~~~----vR~~aL~~L~~l 1239 (1400)
.++.++.-+....+.-...-...+.+|..++ ..|. -..+..+.-+-+-.|++...+.++. .=+.-+-++..|
T Consensus 46 lMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~kNPsnP~FnHylFEsi~~lir~~~~~~~~~v~~~E~~L~P~f~~I 125 (435)
T PF03378_consen 46 LMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVSKNPSNPRFNHYLFESIGALIRFVCEADPEAVSQFEEALFPPFQEI 125 (435)
T ss_dssp HHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHS-GGGHH---HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCCcchhhhHHHHHHHHHHhccCCChhHHHHHHHHHHHHHHHH
Confidence 3455555554433321223334444444443 2221 1222223333333444444433333 222335667777
Q ss_pred HhhccccccccHHHHHHHHHHHhc-CCc-------------------HHHHHHHHHHHHHHHhhcCh--------hhHHH
Q 000599 1240 LKNQKDVMEDSVEIVIEKLLHVTK-DAV-------------------PKVSNEAEHCLTVVLSQYDP--------FRCLS 1291 (1400)
Q Consensus 1240 ~~~~~~~~~~~~e~~l~~ll~~~~-D~~-------------------k~V~~aA~~al~~i~~~~~p--------~~~l~ 1291 (1400)
++..-..|-||+-.+|--+++.+. ++- +.-+-+....+.++++..+. ..++.
T Consensus 126 Lq~dV~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~~i~~~~~l~~iLg 205 (435)
T PF03378_consen 126 LQQDVQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPSFIVANNQLEPILG 205 (435)
T ss_dssp HHTT-TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGGG----S-CHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCchhhcchhhHHHHHH
Confidence 776666777777777777777776 111 11123555555655554333 34777
Q ss_pred hhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC--CHHHHHHHHH
Q 000599 1292 VIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ--SADVRKTVVF 1352 (1400)
Q Consensus 1292 ~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~--~seVRkaAv~ 1352 (1400)
+...++.+|.. =..+.++|..+++.++.+.+.++++.|+-.+.+-+... ..-||.-.+|
T Consensus 206 vFQkLi~sk~~--D~~gF~LL~~iv~~~p~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F 266 (435)
T PF03378_consen 206 VFQKLIASKAN--DHYGFDLLESIVENLPPEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVF 266 (435)
T ss_dssp HHHHHHT-TTC--HHHHHHHHHHHHHHS-HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHH
T ss_pred HHHHHHCCCCc--chHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHH
Confidence 77777777754 25689999999999999999999999999998888743 3445555555
No 200
>cd08050 TAF6 TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and is involved in forming Transcription Factor IID (TFIID) complex. The TATA Binding Protein (TBP) Associated Factor 6 (TAF6) is one of several TAFs that bind TBP and are involved in forming Transcription Factor IID (TFIID) complex. TFIID is one of seven General Transcription Factors (GTFs) (TFIIA, TFIIB, TFIID, TFIIE, TFIIF, and TFIID) that are involved in accurate initiation of transcription by RNA polymerase II in eukaryotes. TFIID plays an important role in the recognition of promoter DNA and assembly of the pre-initiation complex. TFIID complex is composed of the TBP and at least 13 TAFs. TAFs are named after their electrophoretic mobility in polyacrylamide gels in different species. A new, unified nomenclature has been suggested for the pol II TAFs to show the relationship between TAF orthologs and paralogs. Several hypotheses are proposed for TAFs functions such as serving as
Probab=79.58 E-value=15 Score=44.05 Aligned_cols=135 Identities=16% Similarity=0.091 Sum_probs=78.5
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccC---CcchHHHHHHHHHHHHHHhhhhhHh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDN---NFKVSQGALQSLASAAVLSGEHFKL 78 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~Ds---N~~V~~~aL~~l~~l~~~l~~~~~~ 78 (1400)
+.+.+.+.+.+-..|..|++.|..--.- ..=+-.|+..+...+..+ |..+....+.++.+|+.+-.=.+..
T Consensus 181 ~~It~a~~~~~~~~r~~aL~sL~tD~gl------~~LlPyf~~fI~~~v~~n~~~nl~~L~~lm~~v~ALl~N~~l~le~ 254 (343)
T cd08050 181 EEITEALVGSNEEKRREALQSLRTDPGL------QQLLPYFVRFIAEGVTVNLDQNLALLIYLMRMVRALLDNPNLHLEP 254 (343)
T ss_pred HHHHHHHhCCCHHHHHHHHHHhccCCCc------hhhhhHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHhcCCCCchHH
Confidence 4556667777788888888887433211 000223334333222211 6666777777777777654445678
Q ss_pred hhhhhHHHHHHHh-----CC-----CChhHHHHHHHHHHHHHHHhchh------HHHHHHhhhhhhcCChhH-HHHHHHH
Q 000599 79 HFNALVPAVVERL-----GD-----AKQPVRDAARRLLLTLMEVSSPT------IIVERAGSYAWTHRSWRV-REEFART 141 (1400)
Q Consensus 79 ~~~~ilp~LleKL-----gD-----~K~~vre~a~~~L~~l~e~~~p~------~V~e~l~~~~~~~Knpkv-r~~~l~~ 141 (1400)
|+..++|.++.-+ +. .--.+|+-|..+|..++..++.. .|+..+.+..+..+.|.. +-+++..
T Consensus 255 Ylh~Lip~vltclv~~~l~~~~~~~~h~~LRd~AA~ll~~i~~~f~~~y~~l~~ri~~tl~k~l~d~~~~~~~~YGAi~G 334 (343)
T cd08050 255 YLHQLIPSVLTCLVAKQLCSRPPDDNHWALRDYAARLLAQICRKFSTSYNTLQPRITRTLLKALLDPKKPLTTHYGAIVG 334 (343)
T ss_pred hHHHHHHHHHHHhhhHhhcCCCCCchHHHHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHcCCCCCcchhhHHHHH
Confidence 8888888876554 22 22368999999999998764432 344444444444444444 5555544
Q ss_pred H
Q 000599 142 V 142 (1400)
Q Consensus 142 L 142 (1400)
|
T Consensus 335 L 335 (343)
T cd08050 335 L 335 (343)
T ss_pred H
Confidence 4
No 201
>KOG2137 consensus Protein kinase [Signal transduction mechanisms]
Probab=79.58 E-value=13 Score=47.26 Aligned_cols=129 Identities=19% Similarity=0.286 Sum_probs=97.1
Q ss_pred HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhhcChh
Q 000599 1209 YFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPF 1287 (1400)
Q Consensus 1209 ~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~-~~D~~k~V~~aA~~al~~i~~~~~p~ 1287 (1400)
....||..|...++|.+..+.+.+|.++...++.....|- -..+||+|-++ ++.....|+..+-.|+..+++.+.-.
T Consensus 386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~iD~~~v--k~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD~~ 463 (700)
T KOG2137|consen 386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESIDVPFV--KQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLDKA 463 (700)
T ss_pred HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhccHHHH--HHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 3567888999999999999999999999999986652211 33467777664 45666788889999999999999999
Q ss_pred hHHHhhhhhcc---CCchhhHhHHHHHHHHHHhhcCH--HHH-HhhhhhhHHHHHHHh
Q 000599 1288 RCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQ--EEL-MAQLPSFLPALFEAF 1339 (1400)
Q Consensus 1288 ~~l~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~--~~l-~~~l~~liP~l~~~~ 1339 (1400)
.|++.+.|+++ +.+-.+.++++.+...++-...- +.+ +..+|-++|..++..
T Consensus 464 ~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~ 521 (700)
T KOG2137|consen 464 AVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPS 521 (700)
T ss_pred HhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhccc
Confidence 99999998885 45666888888888877644432 333 346788888776543
No 202
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=79.51 E-value=12 Score=45.89 Aligned_cols=110 Identities=19% Similarity=0.238 Sum_probs=75.6
Q ss_pred hCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCC
Q 000599 91 LGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLND 170 (1400)
Q Consensus 91 LgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d 170 (1400)
..|.++.||.+|.-+|--++ +-.++.++..+ +...++-|+.||.++.-.|--+..--|. +..+..+-.++.|
T Consensus 561 vsD~nDDVrRAAViAlGfvc-~~D~~~lv~tv-elLs~shN~hVR~g~AvaLGiacag~G~------~~a~diL~~L~~D 632 (926)
T COG5116 561 VSDGNDDVRRAAVIALGFVC-CDDRDLLVGTV-ELLSESHNFHVRAGVAVALGIACAGTGD------KVATDILEALMYD 632 (926)
T ss_pred cccCchHHHHHHHHheeeeE-ecCcchhhHHH-HHhhhccchhhhhhhHHHhhhhhcCCcc------HHHHHHHHHHhhC
Confidence 57889999988877665543 22344444333 3356788999999988777544332232 5677888899999
Q ss_pred CChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHHHhh
Q 000599 171 PNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERI 218 (1400)
Q Consensus 171 ~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~ 218 (1400)
++.-||.+|+-.++-|.....+.+ .| +.+.|.+.|+.+
T Consensus 633 ~~dfVRQ~AmIa~~mIl~Q~n~~L---------np-~v~~I~k~f~~v 670 (926)
T COG5116 633 TNDFVRQSAMIAVGMILMQCNPEL---------NP-NVKRIIKKFNRV 670 (926)
T ss_pred cHHHHHHHHHHHHHHHHhhcCccc---------Ch-hHHHHHHHHHHH
Confidence 999999999999988876655533 33 255666666664
No 203
>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]
Probab=79.51 E-value=37 Score=44.32 Aligned_cols=171 Identities=15% Similarity=0.227 Sum_probs=119.4
Q ss_pred HHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHHHh
Q 000599 1186 SKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQK---DVMEDSVEIVIEKLLHVT 1262 (1400)
Q Consensus 1186 ~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~---~~~~~~~e~~l~~ll~~~ 1262 (1400)
-|..|+..+..+- +..+.......+|+.|.....+.+..+--.-+.+|.-+++--+ +.++.-+.+++..|+-.+
T Consensus 507 ~ki~a~~~~~~~~---~~~vl~~~~p~ild~L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~ 583 (1005)
T KOG2274|consen 507 VKISAVRAFCGYC---KVKVLLSLQPMILDGLLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKY 583 (1005)
T ss_pred hhHHHHHHHHhcc---CceeccccchHHHHHHHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHh
Confidence 4455555444333 4444455678888899998888777777777788888887643 234455555555555555
Q ss_pred cCCcHHHHHHHHHHHHHHHh---hcChh--hHHHhhhhhccCCchh----hHhHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000599 1263 KDAVPKVSNEAEHCLTVVLS---QYDPF--RCLSVIVPLLVTEDEK----TLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333 (1400)
Q Consensus 1263 ~D~~k~V~~aA~~al~~i~~---~~~p~--~~l~~l~~~l~s~~~~----~~~~alk~l~~lv~~~~~~~l~~~l~~liP 1333 (1400)
.+- +.|...+.+|++-++. .+.|. +|||-|.+++....|. ---.+++.|+.+++.-+++.-...+.-..|
T Consensus 584 s~D-P~V~~~~qd~f~el~q~~~~~g~m~e~~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~~~~Fp 662 (1005)
T KOG2274|consen 584 SED-PQVASLAQDLFEELLQIAANYGPMQERLIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLICYAFP 662 (1005)
T ss_pred cCC-chHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHHHHHhH
Confidence 433 3888889998877764 47774 6999999999765432 334589999999977666644456667788
Q ss_pred HHHHHh-cCCCHHHHHHHHHHHHHHHHH
Q 000599 1334 ALFEAF-GNQSADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1334 ~l~~~~-~d~~seVRkaAv~~lv~~~~~ 1360 (1400)
+|.++. |..|-++=..+-.||-++-.+
T Consensus 663 aVak~tlHsdD~~tlQ~~~EcLra~Is~ 690 (1005)
T KOG2274|consen 663 AVAKITLHSDDHETLQNATECLRALISV 690 (1005)
T ss_pred HhHhheeecCChHHHHhHHHHHHHHHhc
Confidence 888885 566788889999999887766
No 204
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=79.43 E-value=14 Score=39.14 Aligned_cols=146 Identities=12% Similarity=0.185 Sum_probs=87.4
Q ss_pred HhHHHHHHHHHhhhc-cCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHH------H
Q 000599 37 AEVTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLT------L 109 (1400)
Q Consensus 37 ~~~~~lv~~l~~~l~-DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~------l 109 (1400)
.++-.|++.+...++ +.+..+...++.+|+.+= .+.+|....+..-.+ +.......+...+.... -
T Consensus 6 ~~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGilG-----ALDP~~~k~~~~~~~--~~~~~~~~~~~~~~~l~~~~~~~~ 78 (160)
T PF11865_consen 6 LDYPELLDILLNILKTEQSQSIRREALRVLGILG-----ALDPYKHKSIQKSLD--SKSSENSNDESTDISLPMMGISPS 78 (160)
T ss_pred HHhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-----ccCcHHHhcccccCC--ccccccccccchhhHHhhccCCCc
Confidence 445567777766665 446888889999888761 222222211100000 00000001112222221 1
Q ss_pred HHHhchhHHHHHHhhhhhhcCC-hhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 110 MEVSSPTIIVERAGSYAWTHRS-WRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 110 ~e~~~p~~V~e~l~~~~~~~Kn-pkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
.+-+-|..++..++. .++.+. ..-+..++..+...++..|.++.++...++|.++..+...+...|+.-..-|+.+..
T Consensus 79 ~ee~y~~vvi~~L~~-iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMR-ILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHH-HHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 233345667777776 344333 334456777777788888999888878999999999998888999998888888776
Q ss_pred hh
Q 000599 189 YA 190 (1400)
Q Consensus 189 ~~ 190 (1400)
.+
T Consensus 158 iv 159 (160)
T PF11865_consen 158 IV 159 (160)
T ss_pred Hh
Confidence 54
No 205
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=78.54 E-value=2.3e+02 Score=37.31 Aligned_cols=136 Identities=18% Similarity=0.167 Sum_probs=76.3
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh--
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF-- 80 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~-- 80 (1400)
-++..|.+.+-.....++.-|.++--....+ +...-..++.-|.+.+...|..+...++.+|..+.- ....+..+
T Consensus 294 ~Lv~~Ldr~n~ellil~v~fLkkLSi~~ENK-~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSf--d~~~R~~mV~ 370 (708)
T PF05804_consen 294 LLVKCLDRENEELLILAVTFLKKLSIFKENK-DEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSF--DPELRSQMVS 370 (708)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHcCCHHHH-HHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCc--CHHHHHHHHH
Confidence 3556667777666666666665553111110 000111344556677888899999999999998862 22334333
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH------hchhHHHHHHhhhhhhcCChhHHHHHHHHHH
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEV------SSPTIIVERAGSYAWTHRSWRVREEFARTVT 143 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~------~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~ 143 (1400)
..++|.|++-|.|.+ .+.-+..+|-.+.-. +.....+..++...+.+.++++..+.+..++
T Consensus 371 ~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~eliaL~i 437 (708)
T PF05804_consen 371 LGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLELIALLI 437 (708)
T ss_pred CCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHHHHHHHH
Confidence 348899999998865 556666666655421 1111234444443445555666555444433
No 206
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=78.47 E-value=2.5e+02 Score=37.61 Aligned_cols=412 Identities=13% Similarity=0.113 Sum_probs=225.6
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHh-------hh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS-------GE 74 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l-------~~ 74 (1400)
+.+++.+.+..--.|.+-.+.|..++.... +..+..+++-+...+...+......||-++-.+++.- +.
T Consensus 92 enIl~~iv~~p~~iRvql~~~l~~Ii~~D~----p~~Wp~l~d~i~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~ 167 (1010)
T KOG1991|consen 92 ENILETIVQVPELIRVQLTACLNTIIKADY----PEQWPGLLDKIKNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQ 167 (1010)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHhcCC----cccchhHHHHHHHHhcCcchhhHHHHHHHHHHHHHHHhhccccccc
Confidence 346677777777788888888888886532 3567888999999999999999999999999998753 33
Q ss_pred hhHhhhhhhHHHHHHHh----CCCChhHHHHHHHHHHHHHHH---------hchhH---HHH---HHhh-----h-----
Q 000599 75 HFKLHFNALVPAVVERL----GDAKQPVRDAARRLLLTLMEV---------SSPTI---IVE---RAGS-----Y----- 125 (1400)
Q Consensus 75 ~~~~~~~~ilp~LleKL----gD~K~~vre~a~~~L~~l~e~---------~~p~~---V~e---~l~~-----~----- 125 (1400)
.+...+....|.|+++. .+......+.....|--+.-. ..++. .++ .++. .
T Consensus 168 ~l~~~v~~~fP~il~~~~~ll~~~s~~s~el~klIlKifks~~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d 247 (1010)
T KOG1991|consen 168 PLGEAVEELFPDILQIFNGLLSQESYQSVELQKLILKIFKSLIYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLD 247 (1010)
T ss_pred cHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCC
Confidence 45666777888877774 344443333333333322211 11111 111 1110 0
Q ss_pred ---hhhcCChhHHHHHHHHHHHHHHhccCcchhh--hhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhc
Q 000599 126 ---AWTHRSWRVREEFARTVTSAIGLFSATELTL--QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR 200 (1400)
Q Consensus 126 ---~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l--~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~ 200 (1400)
--.++=||++.=.+..|.+..+.||...... .+.|..... .+....+=+.+.+.|..
T Consensus 248 ~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~~f~------------------~n~~~~ile~~lk~l~~ 309 (1010)
T KOG1991|consen 248 PEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQMFL------------------KNFAQGILEVFLKILEQ 309 (1010)
T ss_pred hhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHHHHH------------------HHHHHHHHHHHHHHHHH
Confidence 0123446777778888999999999754321 123322222 11111111111122211
Q ss_pred ----CCCChhhHHHHHHHHHhhCCCCCCCCCCCCcchhhhhcc--ccC-CCCCCCccccccccccccCCCCCCccccCCC
Q 000599 201 ----HNLPNSMVKDINARLERIQPQIRSSDGLPNTFAALEIKT--ASF-NPKKSSPKAKSSTRETSLFGGEDITEKLIEP 273 (1400)
Q Consensus 201 ----~~l~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~--~s~-~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~ 273 (1400)
--+.+..+..+..-+++...... .-.+..|---- ... =|.-+ . . +.+++
T Consensus 310 ~~~~~yls~rvl~~~l~fl~~~Vs~~~-----twkll~PHl~~ii~~vIFPlmc----~---------~--d~dee---- 365 (1010)
T KOG1991|consen 310 WRQQLYLSDRVLYYLLNFLEQCVSHAS-----TWKLLKPHLQVIIQDVIFPLMC----F---------N--DEDEE---- 365 (1010)
T ss_pred HHhcccCCHHHHHHHHHHHHHhccHHH-----HHHHhhhHHHHHHHHhhhhhcC----C---------C--cccHH----
Confidence 11345555555555554311000 00000000000 000 00000 0 0 00000
Q ss_pred cccCChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcC-CCCchhHHHhHHHHHHHHHhh-hcccchHHHHHHHH
Q 000599 274 IKVYSEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGG-AADHPCFRGLLKQLVGPLSTQ-LSDRRSSIVKQACH 351 (1400)
Q Consensus 274 v~i~s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~-~~~~~~f~~~L~~L~~~L~~~-l~Dlrs~Vv~~Ac~ 351 (1400)
. -+.|-.+.+.+-.+.+. .--.-+.+|+.-+..++.-- ...++.+++.+-+++...... ...-|-.----|+.
T Consensus 366 --l-we~DP~EYiR~~~Di~e--d~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~ 440 (1010)
T KOG1991|consen 366 --L-WEEDPYEYIRKKFDIFE--DGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALR 440 (1010)
T ss_pred --H-HhcCHHHHHHhcCchhc--ccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHH
Confidence 0 00111122222222221 12224677777777776543 334555554455555443333 22222223334789
Q ss_pred HHHHHHHHhhh--hHHHHHHH-HHHHHHHHhchhhHHHHHHHHHHHHHHH-HhCC----CcchHHHHHHHhhhCCCHHHH
Q 000599 352 LLCFLSKELLG--DFEACAEM-FIPVLFKLVVITVLVIAESSDNCIKTML-RNCK----AVRVLPRIADCAKNDRNAVLR 423 (1400)
Q Consensus 352 ~l~~La~~Lg~--~f~~~a~~-~lp~Ll~~~~~~kkvi~~sa~~al~~i~-~~~~----~~rll~~i~~~l~~~Kn~~~R 423 (1400)
+++.|+..|.+ .|....+. +++.++-.+.+..-.++..|.-.+..+. ...+ +...+.....++.+++.=.+|
T Consensus 441 ~vgsl~~~L~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~d~~lPV~ 520 (1010)
T KOG1991|consen 441 MVGSLASILLKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLNDNELPVR 520 (1010)
T ss_pred HHHHHHHHHccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhccCCcCchh
Confidence 99999988876 45555554 4567777788888889988888888776 2222 234566667777668778899
Q ss_pred HHHHHHHHHHHhhCCCccc-ccccHHHHHHHHHHHcCCCChH
Q 000599 424 ARCCEYALLVLEHWPDAPE-IQRSADLYEDLIRCCVADAMSE 464 (1400)
Q Consensus 424 ~~~~~~L~~~L~~~~~~~~-l~~~~~~l~~~i~k~l~Da~~e 464 (1400)
.+++.-|..++.....+++ +..++..+.+-+.+..++-+.|
T Consensus 521 VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End 562 (1010)
T KOG1991|consen 521 VEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVEND 562 (1010)
T ss_pred hHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchh
Confidence 9999999999887765433 6778888888888888888887
No 207
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=78.25 E-value=5.7 Score=46.07 Aligned_cols=169 Identities=19% Similarity=0.253 Sum_probs=103.9
Q ss_pred hHHHHHHHHHHHHHhc-CChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc--ccccHHHHHHHHHHH
Q 000599 1185 TSKHGALQQLIKASVA-NDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV--MEDSVEIVIEKLLHV 1261 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~-~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~--~~~~~e~~l~~ll~~ 1261 (1400)
.-++.|-.++..+... +..-++.+ +.-+-..+++...|- ..++-.+...+..+++.-..+ +... --|..+..+
T Consensus 100 ~Iq~aa~~alGnlAVn~enk~liv~-l~Gl~~Li~qmmtd~-vevqcnaVgCitnLaT~d~nk~kiA~s--GaL~pltrL 175 (550)
T KOG4224|consen 100 CIQCAAGEALGNLAVNMENKGLIVS-LLGLDLLILQMMTDG-VEVQCNAVGCITNLATFDSNKVKIARS--GALEPLTRL 175 (550)
T ss_pred hhhhhhhhhhccceeccCCceEEEe-ccChHHHHHHhcCCC-cEEEeeehhhhhhhhccccchhhhhhc--cchhhhHhh
Confidence 5566677777766432 22222111 222223344555543 234444555555555543333 3332 111222223
Q ss_pred hcCCcHHHHHHHHHHHHHHHhhcChh------hHHHhhhhhccCCchhhHhHHHHHHHHH-HhhcCHHHHHhhhhhhHHH
Q 000599 1262 TKDAVPKVSNEAEHCLTVVLSQYDPF------RCLSVIVPLLVTEDEKTLVTCINCLTKL-VGRLSQEELMAQLPSFLPA 1334 (1400)
Q Consensus 1262 ~~D~~k~V~~aA~~al~~i~~~~~p~------~~l~~l~~~l~s~~~~~~~~alk~l~~l-v~~~~~~~l~~~l~~liP~ 1334 (1400)
.+-++--|++-|..++-.+-....-- --+|+|...+.+.+..+...|...+..+ |.+..+..|...=|.++|.
T Consensus 176 akskdirvqrnatgaLlnmThs~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~ 255 (550)
T KOG4224|consen 176 AKSKDIRVQRNATGALLNMTHSRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPA 255 (550)
T ss_pred cccchhhHHHHHHHHHHHhhhhhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHH
Confidence 33334577888888887665443332 2689999999999888888888888766 5666777788888999999
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1335 LFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1335 l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
|++.|+|.++-|.-.|-.+|-.+
T Consensus 256 Lv~Lmd~~s~kvkcqA~lALrnl 278 (550)
T KOG4224|consen 256 LVDLMDDGSDKVKCQAGLALRNL 278 (550)
T ss_pred HHHHHhCCChHHHHHHHHHHhhh
Confidence 99999999999988888776544
No 208
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=77.66 E-value=15 Score=43.17 Aligned_cols=72 Identities=18% Similarity=0.224 Sum_probs=54.9
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhh--hhhhHHHHHHHhC-CCChhHHHHHHHHHHHHHHH
Q 000599 41 SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH--FNALVPAVVERLG-DAKQPVRDAARRLLLTLMEV 112 (1400)
Q Consensus 41 ~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~--~~~ilp~LleKLg-D~K~~vre~a~~~L~~l~e~ 112 (1400)
.-++.|.+.++..++.|+..||..+.+++.+||+.|... ...+...|..-+. ..-.+|+++.+.++..|.+.
T Consensus 45 d~lk~i~KRln~~dphV~L~AlTLlda~~~NCg~~~r~EVsSr~F~~el~al~~~~~h~kV~~k~~~lv~eWsee 119 (462)
T KOG2199|consen 45 DCLKAIMKRLNHKDPHVVLQALTLLDACVANCGKRFRLEVSSRDFTTELRALIESKAHPKVCEKMRDLVKEWSEE 119 (462)
T ss_pred HHHHHHHHHhcCCCcchHHHHHHHHHHHHHhcchHHHHHHhhhhHHHHHHHHHhhcccHHHHHHHHHHHHHHHHH
Confidence 566788899999999999999999999999999988753 3344444444444 45556888888888888764
No 209
>KOG4524 consensus Uncharacterized conserved protein [Function unknown]
Probab=77.17 E-value=2.7e+02 Score=37.28 Aligned_cols=75 Identities=16% Similarity=0.115 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHh
Q 000599 39 VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS 113 (1400)
Q Consensus 39 ~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~ 113 (1400)
+...++.+.......|..|...-.++...+..++....+.+...++-.++.-..|-++.++....+.+.-+++..
T Consensus 276 L~~~~~~~~~~~~~~~~~v~~aL~d~~~~Ll~~C~~sL~~c~~~llesll~L~ndEn~ki~~~~~~~l~~~~eq~ 350 (1014)
T KOG4524|consen 276 LNIALKAIIPLRKHNNESVREALADFVSILLTRCENSLNNCEKHLLESLVHLENDENPKLPSHCVKLLEVLNEQL 350 (1014)
T ss_pred HHHHHHhhhhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCChhHHHHHHHHHHHHHHHH
Confidence 344455555555888999999999999999988888888888888888887778899999999999999999854
No 210
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=76.43 E-value=71 Score=37.67 Aligned_cols=191 Identities=18% Similarity=0.213 Sum_probs=108.8
Q ss_pred hHHHHHHHHHHHHHhcCCh--hhHHHHHH----HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHH
Q 000599 1185 TSKHGALQQLIKASVANDH--SIWTKYFN----QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKL 1258 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~--~~~~~~f~----~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~l 1258 (1400)
+...-.|.-|.+++.++.. ..+.+..+ .....++..+...+..+...|+.+|..++..-+........-+++.+
T Consensus 72 d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~l 151 (312)
T PF03224_consen 72 DTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKL 151 (312)
T ss_dssp HHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHH
Confidence 4455566667777766531 22222111 24556777777778889999999999999987766666556677777
Q ss_pred HHHhcC----CcHHHHHHHHHHHHHHHhhcCh-------hhHHHhhhhhc------cCC-chhhHhHHHHHHHHHHhhcC
Q 000599 1259 LHVTKD----AVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLL------VTE-DEKTLVTCINCLTKLVGRLS 1320 (1400)
Q Consensus 1259 l~~~~D----~~k~V~~aA~~al~~i~~~~~p-------~~~l~~l~~~l------~s~-~~~~~~~alk~l~~lv~~~~ 1320 (1400)
++...+ +...+...|..|+..++.. +. ...++.|.+++ .+. +.+..-.++=++=.| .+.
T Consensus 152 l~~L~~~l~~~~~~~~~~av~~L~~LL~~-~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlL--SF~ 228 (312)
T PF03224_consen 152 LQWLSSQLSSSDSELQYIAVQCLQNLLRS-KEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLL--SFE 228 (312)
T ss_dssp HHHHH-TT-HHHH---HHHHHHHHHHHTS-HHHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHH--TTS
T ss_pred HHHHHHhhcCCCcchHHHHHHHHHHHhCc-chhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHH--hcC
Confidence 776664 3345667777888887743 22 34677777777 111 233332233222222 223
Q ss_pred H---HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHH-HHHHHH
Q 000599 1321 Q---EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQ-LRLVTI 1382 (1400)
Q Consensus 1321 ~---~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~-~kll~~ 1382 (1400)
+ +.+..+ .++|.|.+-+.++..| |-.+-|+..+...+...-..+++.+...+ .++|+.
T Consensus 229 ~~~~~~~~~~--~~i~~L~~i~~~~~KE--KvvRv~la~l~Nl~~~~~~~~~~~mv~~~~l~~l~~ 290 (312)
T PF03224_consen 229 PEIAEELNKK--YLIPLLADILKDSIKE--KVVRVSLAILRNLLSKAPKSNIELMVLCGLLKTLQN 290 (312)
T ss_dssp HHHHHHHHTT--SHHHHHHHHHHH--SH--HHHHHHHHHHHHTTSSSSTTHHHHHHHH-HHHHHHH
T ss_pred HHHHHHHhcc--chHHHHHHHHHhcccc--hHHHHHHHHHHHHHhccHHHHHHHHHHccHHHHHHH
Confidence 2 223222 2899999999988887 99999999999888764444555554444 344443
No 211
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=76.40 E-value=26 Score=44.12 Aligned_cols=32 Identities=19% Similarity=0.196 Sum_probs=26.3
Q ss_pred hhHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 000599 159 AILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1400)
Q Consensus 159 ~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~ 190 (1400)
.++..++.+++|...-||..|+.++..+....
T Consensus 386 ev~~lv~r~lqDrss~VRrnaikl~SkLL~~H 417 (1128)
T COG5098 386 EVIRLVGRRLQDRSSVVRRNAIKLCSKLLMRH 417 (1128)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhcC
Confidence 46666788999999999999999998876543
No 212
>PF11640 TAN: Telomere-length maintenance and DNA damage repair; InterPro: IPR021668 ATM is a large protein kinase, in humans, critical for responding to DNA double-strand breaks (DSBs). Tel1, the orthologue from budding yeast, also regulates responses to DSBs. Tel1 is important for maintaining viability and for phosphorylation of the DNA damage signal transducer kinase Rad53 (an orthologue of mammalian CHK2). In addition to functioning in the response to DSBs, numerous findings indicate that Tel1/ATM regulates telomeres. The overall domain structure of Tel1/ATM is shared by proteins of the phosphatidylinositol 3-kinase (PI3K)-related kinase (PIKK) family, but this family carries a unique and functionally important TAN sequence motif, near its N-terminal, LxxxKxxE/DRxxxL. which is conserved specifically in the Tel1/ATM subclass of the PIKKs. The TAN motif is essential for both telomere length maintenance and Tel1 action in response to DNA damage []. It is classified as an 2.7.11.1 from EC. ; GO: 0004674 protein serine/threonine kinase activity
Probab=76.39 E-value=38 Score=35.56 Aligned_cols=109 Identities=13% Similarity=0.273 Sum_probs=67.5
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC------ChhhHHHHHHHHHHHHHH---Hh-cCCCh---HH-----H-
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN------DHSIWTKYFNQILTAVLE---VL-DDADS---SV-----R- 1229 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~------~~~~~~~~f~~ll~~Ll~---~l-~d~~~---~v-----R- 1229 (1400)
+.+++..|...+ ..+|.+|+++|..++... +.-.|..-|.-|+..+.. .+ ..++. .. |
T Consensus 6 i~~~~~~L~S~k---~keR~~al~~L~~il~~~~~~~~l~~k~~~~ifeaL~~~i~~Ek~~y~~~~~~~~s~~~~~~~RL 82 (155)
T PF11640_consen 6 INSILRLLSSDK---IKERNKALEDLRHILSSPPRVDSLNDKQWHSIFEALFRCIEKEKEAYSRKKSSSASTATTAESRL 82 (155)
T ss_pred HHHHHHHHhccc---cchHHHHHHHHHHHHcCccccccCCcchHHHHHHHHHHHHHHHHHHHhcCCCcccchHHHHHHHH
Confidence 566777777665 489999999999999654 233466666655555432 22 22211 22 2
Q ss_pred HHHHHHHHHHHhhcccccccc-HHHHHHHHHHHhcCCcHH-HHHHHHHHHHHH
Q 000599 1230 EVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVTKDAVPK-VSNEAEHCLTVV 1280 (1400)
Q Consensus 1230 ~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~~D~~k~-V~~aA~~al~~i 1280 (1400)
..|..+|+.+++.--.+|..= +..++..|++.+.++... +.--+..++++|
T Consensus 83 ~~~a~~lR~~ve~~~~~~k~kt~~~Ll~hI~~~l~~~~~~~~~p~~~Dy~k~L 135 (155)
T PF11640_consen 83 SSCASALRLFVEKSNSRLKRKTVKALLDHITDLLPDPDDSLLEPLSLDYSKIL 135 (155)
T ss_pred HHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHhhCCchhHHHHHHHHHHHHH
Confidence 345666777666555666653 778999999999998623 333344444444
No 213
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=76.36 E-value=19 Score=36.78 Aligned_cols=140 Identities=15% Similarity=0.321 Sum_probs=79.0
Q ss_pred HHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCc
Q 000599 1187 KHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAV 1266 (1400)
Q Consensus 1187 r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~ 1266 (1400)
+.....-+..++...-+..|...|. .++..+.. ++...+..|.+|..+.+.... |. ..+-.
T Consensus 5 ~~kl~~~l~~i~~~~~P~~Wp~~l~----~l~~~~~~-~~~~~~~~L~iL~~l~eEi~~----~~----------~~~~~ 65 (148)
T PF08389_consen 5 RNKLAQVLAEIAKRDWPQQWPDFLE----DLLQLLQS-SPQHLELVLRILRILPEEITD----FR----------RSSLS 65 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTTSTTHHH----HHHHHHHT-THHHHHHHHHHHHHHHHHHHT----SH----------CCHSH
T ss_pred HHHHHHHHHHHHHHHChhhCchHHH----HHHHHhcc-chhHHHHHHHHHHHHHHHHHh----hh----------chhhh
Confidence 3334455666666555666766555 34444443 355566677777766663222 10 00000
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCc----hhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000599 1267 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTED----EKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1267 k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~----~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~ 1342 (1400)
..-++.-..+++. + -+.++.++..++.... ......+++++...+.-.+.+.+.. ..+++.+.+.+.+
T Consensus 66 ~~r~~~l~~~l~~---~--~~~i~~~l~~~l~~~~~~~~~~~~~~~L~~l~s~i~~~~~~~i~~--~~~l~~~~~~l~~- 137 (148)
T PF08389_consen 66 QERRRELKDALRS---N--SPDILEILSQILSQSSSEANEELVKAALKCLKSWISWIPIELIIN--SNLLNLIFQLLQS- 137 (148)
T ss_dssp HHHHHHHHHHHHH---H--HHHHHHHHHHHHHHHCHCCHHHHHHHHHHHHHHHTTTS-HHHHHS--SSHHHHHHHHTTS-
T ss_pred HHHHHHHHHHHHH---H--HHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHHHhCCHHHhcc--HHHHHHHHHHcCC-
Confidence 1112222222222 1 4455666666664221 4567788999999997556666654 4589999999944
Q ss_pred CHHHHHHHHHHH
Q 000599 1343 SADVRKTVVFCL 1354 (1400)
Q Consensus 1343 ~seVRkaAv~~l 1354 (1400)
++.+.+|..|+
T Consensus 138 -~~~~~~A~~cl 148 (148)
T PF08389_consen 138 -PELREAAAECL 148 (148)
T ss_dssp -CCCHHHHHHHH
T ss_pred -HHHHHHHHHhC
Confidence 44599999986
No 214
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=76.33 E-value=36 Score=43.84 Aligned_cols=169 Identities=18% Similarity=0.215 Sum_probs=97.6
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ 1243 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d----~~~~vR~~aL~~L~~l~~~~ 1243 (1400)
.+.-+.+++.... .+..+...++..+..++.... ..++..+++++.+ .+..+|..|+..+..|++..
T Consensus 358 a~~~i~~~i~~~~-~~~~ea~~~~~~~~~~~~~Pt--------~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~ 428 (574)
T smart00638 358 ALKFIKQWIKNKK-ITPLEAAQLLAVLPHTARYPT--------EEILKALFELAESPEVQKQPYLRESALLAYGSLVRRY 428 (574)
T ss_pred HHHHHHHHHHcCC-CCHHHHHHHHHHHHHhhhcCC--------HHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHH
Confidence 3555666655543 223455555555555544333 2344466677664 24458999999988888743
Q ss_pred c---cccccc-HHHHHHHHHHHhcC----CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc-CC--chhhHhHHHHHH
Q 000599 1244 K---DVMEDS-VEIVIEKLLHVTKD----AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-TE--DEKTLVTCINCL 1312 (1400)
Q Consensus 1244 ~---~~~~~~-~e~~l~~ll~~~~D----~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~-s~--~~~~~~~alk~l 1312 (1400)
- ....++ ++.+++++.+.+++ ...+. ...++++|. .+.-+..++++.+++. +. .-.+++.|+..|
T Consensus 429 c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~---~~~~LkaLG-N~g~~~~i~~l~~~l~~~~~~~~~iR~~Av~Al 504 (574)
T smart00638 429 CVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE---IQLYLKALG-NAGHPSSIKVLEPYLEGAEPLSTFIRLAAILAL 504 (574)
T ss_pred hcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh---eeeHHHhhh-ccCChhHHHHHHHhcCCCCCCCHHHHHHHHHHH
Confidence 1 111111 34455555543332 21222 234555554 3455677778888886 22 335899999999
Q ss_pred HHHHhhcCHHHHHhhhhhhHHHHHHHhc--CCCHHHHHHHHHHHHHH
Q 000599 1313 TKLVGRLSQEELMAQLPSFLPALFEAFG--NQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1313 ~~lv~~~~~~~l~~~l~~liP~l~~~~~--d~~seVRkaAv~~lv~~ 1357 (1400)
.++++.++. .+ .+.+..-|. +.++|||-+|+..|+..
T Consensus 505 r~~a~~~p~-~v-------~~~l~~i~~n~~e~~EvRiaA~~~lm~t 543 (574)
T smart00638 505 RNLAKRDPR-KV-------QEVLLPIYLNRAEPPEVRMAAVLVLMET 543 (574)
T ss_pred HHHHHhCch-HH-------HHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence 999877773 33 333333343 57899999999987654
No 215
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=76.17 E-value=5 Score=43.36 Aligned_cols=85 Identities=19% Similarity=0.274 Sum_probs=64.0
Q ss_pred HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh---hhhc
Q 000599 1289 CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML---GKAF 1365 (1400)
Q Consensus 1289 ~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~l---ge~~ 1365 (1400)
.++....+|..-+++.+..|-.-++.|+.+.+ +.+.+.||.+|+.|..++...|-||-+.+.+.+.-+.... |.++
T Consensus 115 yLp~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g-~kilpVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aL 193 (262)
T KOG3961|consen 115 YLPLFFDGLAETDHPYRFVARQGITDLLLAGG-EKILPVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAAL 193 (262)
T ss_pred HHHHHhhhhhhcCCCcchhhhhcHHHHHHhcc-cccccccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhh
Confidence 34444455544455556666666677776666 7778899999999999999999999999999988777654 4688
Q ss_pred chhhhhhcH
Q 000599 1366 LPYLERLNS 1374 (1400)
Q Consensus 1366 ~p~l~~L~~ 1374 (1400)
.||+-+|=+
T Consensus 194 VPfYRQlLp 202 (262)
T KOG3961|consen 194 VPFYRQLLP 202 (262)
T ss_pred hhHHHHhhh
Confidence 898876644
No 216
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=75.89 E-value=6.2 Score=45.37 Aligned_cols=155 Identities=13% Similarity=0.216 Sum_probs=107.9
Q ss_pred hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHH-HHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Q 000599 1203 HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEHCLTVVL 1281 (1400)
Q Consensus 1203 ~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e-~~l~~ll~~~~D~~k~V~~aA~~al~~i~ 1281 (1400)
+.-|. +..+.+..|.+.+-..++.|..-||..+.+|..-.-.+..-.+. -+...|++++.++...|.+-|...+..|+
T Consensus 235 ~P~w~-~isqalpiL~KLiys~D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPalR~vGNIV 313 (526)
T COG5064 235 PPDWS-NISQALPILAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPALRSVGNIV 313 (526)
T ss_pred CCchH-HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHHHhhcCee
Confidence 34564 67788888888888778887777888888887632222222222 25567889988888888777777776666
Q ss_pred hhcChh-------hHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhcCCCHHHHHHHHHH
Q 000599 1282 SQYDPF-------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFC 1353 (1400)
Q Consensus 1282 ~~~~p~-------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l-~~liP~l~~~~~d~~seVRkaAv~~ 1353 (1400)
+-.... -.++.+.++|.+.+..++-.+|=.+..+. .-..+++...+ ..++|.|+..+...+=-.||.|-.+
T Consensus 314 TG~D~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNIT-AGnteqiqavid~nliPpLi~lls~ae~k~kKEACWA 392 (526)
T COG5064 314 TGSDDQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNIT-AGNTEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWA 392 (526)
T ss_pred ecCccceehheecccHHHHHHHhcChhhhhhhhhheeecccc-cCCHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHH
Confidence 543332 26778888888777777777766655554 33345554443 4789999999999999999999888
Q ss_pred HHHHHH
Q 000599 1354 LVDIYI 1359 (1400)
Q Consensus 1354 lv~~~~ 1359 (1400)
+.....
T Consensus 393 isNats 398 (526)
T COG5064 393 ISNATS 398 (526)
T ss_pred HHhhhc
Confidence 766543
No 217
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=75.30 E-value=67 Score=40.70 Aligned_cols=159 Identities=16% Similarity=0.114 Sum_probs=93.7
Q ss_pred HhhcCCCCChhHHHHHHHHHHHHHhcCChh-----hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccc
Q 000599 1175 LMCNGNDGSPTSKHGALQQLIKASVANDHS-----IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMED 1249 (1400)
Q Consensus 1175 ~l~~~~~~~~~~r~~al~~L~~~l~~~~~~-----~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~ 1249 (1400)
++-|...+ .-|..-++..+.++.+-..+ ...+.+..++..|.+.+.|.++-+|..||.++..|+.-. .++-.
T Consensus 306 ~LLdses~--tlRc~~~EicaN~V~~~~~d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~ 382 (1128)
T COG5098 306 ELLDSESF--TLRCCFLEICANLVEHFKKDGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVG 382 (1128)
T ss_pred HHhcccch--hHHHHHHHHHHHHHHHHhcchhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccc
Confidence 34454433 56777777766666543221 123356667777888999999999999999999999843 23333
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhh
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLP 1329 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~ 1329 (1400)
--.-++..+.-..+|..-.|++-|.....-++. .||...+.- ..++-.-|...+...+ ..+.
T Consensus 383 ~r~ev~~lv~r~lqDrss~VRrnaikl~SkLL~-~HPF~~~h~--~~l~~~~wek~L~~~E---------------~qlN 444 (1128)
T COG5098 383 RRHEVIRLVGRRLQDRSSVVRRNAIKLCSKLLM-RHPFASEHG--SQLRLTLWEKNLGSAE---------------NQLN 444 (1128)
T ss_pred hHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHh-cCChhhhcc--chhhhHHHHhhcchhH---------------hHhh
Confidence 333345556677888888898888775554443 366654442 2222233544443322 2222
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHH
Q 000599 1330 SFLPALFEAFGNQSADVRKTVVFCL 1354 (1400)
Q Consensus 1330 ~liP~l~~~~~d~~seVRkaAv~~l 1354 (1400)
.+-|++-+.+.|.+-||-.---.|-
T Consensus 445 slk~~~qe~l~D~E~Eveqd~~q~~ 469 (1128)
T COG5098 445 SLKSGLQETLCDGEKEVEQDEGQCR 469 (1128)
T ss_pred ccchhhhccccchHHhhhhhhhhhh
Confidence 3445555555666666664444443
No 218
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=75.08 E-value=53 Score=45.46 Aligned_cols=70 Identities=14% Similarity=0.257 Sum_probs=56.6
Q ss_pred HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000599 1289 CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1359 (1400)
Q Consensus 1289 ~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~ 1359 (1400)
++|-|...|.+.+...|..|+++++.++...+ ..+...-+.+.-.....+.|...+||-++|.|.-.++.
T Consensus 260 vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~-~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~~~~~~l~ 329 (1266)
T KOG1525|consen 260 VIPQLEFELLSEQEEVRLKAVKLVGRMFSDKD-SQLSETYDDLWSAFLGRFNDISVEVRMECVESIKQCLL 329 (1266)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHHHHhcch-hhhcccchHHHHHHHHHhccCChhhhhhHHHHhHHHHh
Confidence 55666666778999999999999999995555 66666667777788889999999999999998766553
No 219
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=75.07 E-value=7.5 Score=44.48 Aligned_cols=94 Identities=12% Similarity=0.206 Sum_probs=72.0
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc----CCchhhHhHHHHHHHHHHhhcCHHHHHhhh----hhhHHHHH
Q 000599 1265 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV----TEDEKTLVTCINCLTKLVGRLSQEELMAQL----PSFLPALF 1336 (1400)
Q Consensus 1265 ~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~----s~~~~~~~~alk~l~~lv~~~~~~~l~~~l----~~liP~l~ 1336 (1400)
.+.+--+-...|+..+.+.--|..+++-+.|.++ ..+.-++..+++-++.++|.+++..+...+ .+|.|-|.
T Consensus 55 nhrekttlcVscLERLfkakegahlapnlmpdLQrGLiaddasVKiLackqigcilEdcDtnaVseillvvNaeilklil 134 (524)
T KOG4413|consen 55 NHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGLIADDASVKILACKQIGCILEDCDTNAVSEILLVVNAEILKLIL 134 (524)
T ss_pred cccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcccCCcchhhhhhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHH
Confidence 3444445567788777777666665555555554 556668899999999999999977665543 58999999
Q ss_pred HHhcCCCHHHHHHHHHHHHHHH
Q 000599 1337 EAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1337 ~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
.|+...+-+|-|||...+-.+.
T Consensus 135 dcIggeddeVAkAAiesikria 156 (524)
T KOG4413|consen 135 DCIGGEDDEVAKAAIESIKRIA 156 (524)
T ss_pred HHHcCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999976554
No 220
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=74.91 E-value=3.7e+02 Score=37.83 Aligned_cols=111 Identities=19% Similarity=0.207 Sum_probs=84.6
Q ss_pred hHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH----hchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccC
Q 000599 76 FKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV----SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1400)
Q Consensus 76 ~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~----~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~ 151 (1400)
|...+..++..|+--+|+....+|.+|.+||-.++++ ..-..|.+.+.. -+.....-||+.++..+...+-.+..
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~-R~~DssasVREAaldLvGrfvl~~~e 888 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHG-RLNDSSASVREAALDLVGRFVLSIPE 888 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHH-hhccchhHHHHHHHHHHhhhhhccHH
Confidence 4444556677777778999999999999999999985 223456666654 57777889999888887655433221
Q ss_pred cchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 152 TELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 152 ~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
+..++-..+..-..|+...||.-++..+.+||.-..
T Consensus 889 ----~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~p 924 (1692)
T KOG1020|consen 889 ----LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETP 924 (1692)
T ss_pred ----HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCC
Confidence 224677788888999999999999999999997655
No 221
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=74.86 E-value=1.4e+02 Score=36.00 Aligned_cols=187 Identities=14% Similarity=0.118 Sum_probs=116.8
Q ss_pred HHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhccC---ChHh-H---HHHHHHHHhhhccCCcchHHHHHHHHHHHHHHh-
Q 000599 2 EEALELARA-KDTKERMAGVERLHQLLEASRKSL---TSAE-V---TSLVDCCLDLLKDNNFKVSQGALQSLASAAVLS- 72 (1400)
Q Consensus 2 e~~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~~~---~~~~-~---~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l- 72 (1400)
|+.++.+.. ++...+-+++..+....+-.--.. ++.+ + ..+++.+..|+...|.+....+--+|+.|+.+=
T Consensus 268 e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~ 347 (604)
T KOG4500|consen 268 EDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDD 347 (604)
T ss_pred HHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccch
Confidence 455666666 666667777776666554321111 1111 1 237788889999999999999999999998651
Q ss_pred --hhhhH-hhhhhhHHHHHH-HhCCCChhHHHHHHHHHHHHHH------HhchhHHHHHHhhhhhhcCChhHHHHHHHHH
Q 000599 73 --GEHFK-LHFNALVPAVVE-RLGDAKQPVRDAARRLLLTLME------VSSPTIIVERAGSYAWTHRSWRVREEFARTV 142 (1400)
Q Consensus 73 --~~~~~-~~~~~ilp~Lle-KLgD~K~~vre~a~~~L~~l~e------~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L 142 (1400)
-..+. ..+..++..|.. +--|.+..+.-++..+|..++= +.-|.-|.+.++. .++.-.|.|.--.+..+
T Consensus 348 ~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~aGvteaIL~-~lk~~~ppv~fkllgTl 426 (604)
T KOG4500|consen 348 ICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAPAGVTEAILL-QLKLASPPVTFKLLGTL 426 (604)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccccchHHHHHH-HHHhcCCcchHHHHHHH
Confidence 12222 345555555544 3445555566677788888761 2445678888887 77777788876555544
Q ss_pred HHHHHhc--cCcchhhhhhhHHHHHHhhCCCChh-HHHHHHHHHHHHHhh
Q 000599 143 TSAIGLF--SATELTLQRAILPPILQMLNDPNPG-VREAAILCIEEMYTY 189 (1400)
Q Consensus 143 ~~~l~~f--g~~~l~l~k~~lp~l~~~L~d~n~~-VR~aA~~~l~~l~~~ 189 (1400)
.-+++.. -...+--.+.++..++.+-+.+|-. |--..-.++.-+.+|
T Consensus 427 rM~~d~qe~~a~eL~kn~~l~ekLv~Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 427 RMIRDSQEYIACELAKNPELFEKLVDWSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred HHHHhchHHHHHHHhcCHHHHHHHHHhhhCCccchhhhhhhHHHHHHHHh
Confidence 3333211 1111111157888889988888765 777777777777766
No 222
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=74.86 E-value=57 Score=41.76 Aligned_cols=150 Identities=19% Similarity=0.185 Sum_probs=100.3
Q ss_pred HHHHHhcCCChHHHHHHHHHHH-HHHhhccccccccHHHHHHHHHHH-hcCCcHHHHHHHHHHHHHHHhhcChhhHHHhh
Q 000599 1216 AVLEVLDDADSSVREVALSLIN-EMLKNQKDVMEDSVEIVIEKLLHV-TKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVI 1293 (1400)
Q Consensus 1216 ~Ll~~l~d~~~~vR~~aL~~L~-~l~~~~~~~~~~~~e~~l~~ll~~-~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l 1293 (1400)
.+.+.+.|+++..|-.+...+. +-+.. ++ --.+-.||+- ..|...+|+|+|..++..++-. .|++|..++
T Consensus 523 lI~el~~dkdpilR~~Gm~t~alAy~GT-gn------nkair~lLh~aVsD~nDDVrRaAVialGFVl~~-dp~~~~s~V 594 (929)
T KOG2062|consen 523 LIKELLRDKDPILRYGGMYTLALAYVGT-GN------NKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFR-DPEQLPSTV 594 (929)
T ss_pred HHHHHhcCCchhhhhhhHHHHHHHHhcc-Cc------hhhHHHhhcccccccchHHHHHHHHHheeeEec-ChhhchHHH
Confidence 3556778899998887654443 22221 11 1245566664 7899999999999999988754 899999999
Q ss_pred hhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhc
Q 000599 1294 VPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLN 1373 (1400)
Q Consensus 1294 ~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~ 1373 (1400)
..+-.+-+.-+|-++-=.|+.-.---|-. +-+-.|---+.|+..-||+.|.-++.-|....-+...|-.....
T Consensus 595 ~lLses~N~HVRyGaA~ALGIaCAGtG~~-------eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~~~pkv~~fr 667 (929)
T KOG2062|consen 595 SLLSESYNPHVRYGAAMALGIACAGTGLK-------EAINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQLCPKVNGFR 667 (929)
T ss_pred HHHhhhcChhhhhhHHHHHhhhhcCCCcH-------HHHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccccCchHHHHH
Confidence 88887777777777665555544333322 22333344456999999999999988777776667776665554
Q ss_pred HHHHHHH
Q 000599 1374 STQLRLV 1380 (1400)
Q Consensus 1374 ~s~~kll 1380 (1400)
....|++
T Consensus 668 k~l~kvI 674 (929)
T KOG2062|consen 668 KQLEKVI 674 (929)
T ss_pred HHHHHHh
Confidence 3333333
No 223
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=74.51 E-value=20 Score=47.19 Aligned_cols=165 Identities=15% Similarity=0.200 Sum_probs=97.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHH---HHHHHHHHHhcCCChHHHHHHHHHHH-----------HHHhhcccc-ccc
Q 000599 1185 TSKHGALQQLIKASVANDHSIWTKYFN---QILTAVLEVLDDADSSVREVALSLIN-----------EMLKNQKDV-MED 1249 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~~~~~f~---~ll~~Ll~~l~d~~~~vR~~aL~~L~-----------~l~~~~~~~-~~~ 1249 (1400)
-+|..||.-|..|+--|. |.-++. -|+..+++.|-.+-...|-.=.-+.+ +|++..|+. |-.
T Consensus 485 vHRlRAL~LL~RFLDlGp---WAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~ 561 (1387)
T KOG1517|consen 485 VHRLRALVLLARFLDLGP---WAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQ 561 (1387)
T ss_pred HHHHHHHHHHHHHhccch---hhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEE
Confidence 579999999999997663 221111 24445556665432223321111122 444444433 333
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh-------HHHhhhhhccCC-chhhHhHHHHHHHHHHhhcCH
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQ 1321 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~-------~l~~l~~~l~s~-~~~~~~~alk~l~~lv~~~~~ 1321 (1400)
++.. -+.=.++-+..|.=.+..|+..++--+ +|.+....+++. .+--+.=++-+|++|-+.+..
T Consensus 562 vL~~--------~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~ 633 (1387)
T KOG1517|consen 562 VLDP--------SQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDE 633 (1387)
T ss_pred EecC--------cCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcch
Confidence 3222 011124555556667777887766643 556555666664 455566677899999887775
Q ss_pred HHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000599 1322 EELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1322 ~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~ 1360 (1400)
....-.=..--+-|+..+.|.-+|||-||||||=.+-..
T Consensus 634 Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~ 672 (1387)
T KOG1517|consen 634 ARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSN 672 (1387)
T ss_pred hhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhcc
Confidence 554332233356678888999999999999998887765
No 224
>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length. It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].
Probab=74.32 E-value=16 Score=38.69 Aligned_cols=142 Identities=14% Similarity=0.241 Sum_probs=81.0
Q ss_pred HHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhc---
Q 000599 1209 YFNQILTAVLEVLDDA-DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY--- 1284 (1400)
Q Consensus 1209 ~f~~ll~~Ll~~l~d~-~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~--- 1284 (1400)
.+..+|..|+.+|+.. +..+|..++++|.-| + .++||.--.+..-.+... ..+.......... +....
T Consensus 7 ~yP~LL~~L~~iLk~e~s~~iR~E~lr~lGil-G----ALDP~~~k~~~~~~~~~~--~~~~~~~~~~~~l-~~~~~~~~ 78 (160)
T PF11865_consen 7 DYPELLDILLNILKTEQSQSIRREALRVLGIL-G----ALDPYKHKSIQKSLDSKS--SENSNDESTDISL-PMMGISPS 78 (160)
T ss_pred HhHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-c----ccCcHHHhcccccCCccc--cccccccchhhHH-hhccCCCc
Confidence 3788999999999864 566999898887643 2 344443221111111000 0000011111111 11122
Q ss_pred ----ChhhHHHhhhhhccCCchhh-HhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000599 1285 ----DPFRCLSVIVPLLVTEDEKT-LVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1359 (1400)
Q Consensus 1285 ----~p~~~l~~l~~~l~s~~~~~-~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~ 1359 (1400)
=|.-++..|..+++...... ...++..+..+++..+... -+.||.++|.+...+...++..|..-..-|..+..
T Consensus 79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~c-v~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~lv~ 157 (160)
T PF11865_consen 79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKC-VPYLPQVIPIFLRVIRTCPDSLREFYFQQLADLVS 157 (160)
T ss_pred hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCc-hhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 22236666667776442221 1245777778887777555 78999999999999999999777765555554443
No 225
>PF09324 DUF1981: Domain of unknown function (DUF1981); InterPro: IPR015403 This domain is functionally uncharacterised and found in various plant and yeast protein transport proteins. It is noramlly associated with and C-termianl to the SEC7 domain. The SEC7 domain was named after the first protein found to contain such a region []. It has been shown to be linked with guanine nucleotide exchange function [, ].
Probab=74.00 E-value=12 Score=35.26 Aligned_cols=69 Identities=16% Similarity=0.256 Sum_probs=55.1
Q ss_pred HHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Q 000599 1211 NQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTV 1279 (1400)
Q Consensus 1211 ~~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~ 1279 (1400)
+.+|..+..++.+ .+..||+..|..+..|+...+..+...-..++.-+-.+..|..+.++..|=++++.
T Consensus 16 ~~fL~Pf~~i~~~~~~~~vre~il~ci~qil~~~~~~i~SGW~~if~il~~aa~~~~e~lv~~af~~~~~ 85 (86)
T PF09324_consen 16 KDFLKPFEYIMSNNPSIDVRELILECILQILQSRGENIKSGWKVIFSILRAAAKDNDESLVRLAFQIVQL 85 (86)
T ss_pred HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHhCCCccHHHHHHHHHhh
Confidence 4566667777655 56779999999999999999888877766677777777888889999988888764
No 226
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=73.99 E-value=10 Score=36.80 Aligned_cols=43 Identities=9% Similarity=0.148 Sum_probs=40.4
Q ss_pred CCchhHHHHHHHHHHHhhCCchhhhHHHHHHHHHHHhccCCch
Q 000599 850 KPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD 892 (1400)
Q Consensus 850 ~~l~~~l~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~ 892 (1400)
+.+.++...++..+..-|.+....||.-+.+.|+.+.+++|..
T Consensus 3 ~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~ 45 (102)
T PF12333_consen 3 ELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDE 45 (102)
T ss_pred HHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChH
Confidence 4578999999999999999999999999999999999999998
No 227
>COG5095 TAF6 Transcription initiation factor TFIID, subunit TAF6 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=73.92 E-value=83 Score=36.02 Aligned_cols=154 Identities=12% Similarity=0.139 Sum_probs=81.4
Q ss_pred HHHHHHHHHHHHhhccccccccHHHHHHHHHHHh-----cCCcHH-----HHHHHHHHHHHHHhhcChh------hHHHh
Q 000599 1229 REVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT-----KDAVPK-----VSNEAEHCLTVVLSQYDPF------RCLSV 1292 (1400)
Q Consensus 1229 R~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~-----~D~~k~-----V~~aA~~al~~i~~~~~p~------~~l~~ 1292 (1400)
....+.....++++.--=+++|+-.++|.+|-+. |+..+. ++.-|...++.++..++-. ++.+.
T Consensus 253 LtTv~~m~~sLL~N~~iFvdPY~hqlmPSilTcliakklg~~p~dhe~~alRd~AA~ll~yV~~~F~~~YktLkPRvtrT 332 (450)
T COG5095 253 LTTVVMMYSSLLKNKYIFVDPYLHQLMPSILTCLIAKKLGNVPDDHEHYALRDVAADLLKYVFSNFSSSYKTLKPRVTRT 332 (450)
T ss_pred HHHHHHHHHHHhcCCceeecHHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHHHHHhhhhHhhhhhchHHHHH
Confidence 3334455555555433347899988888877543 344344 7778888889999887653 33332
Q ss_pred h-hhhcc-CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH---HHhhhhcch
Q 000599 1293 I-VPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY---IMLGKAFLP 1367 (1400)
Q Consensus 1293 l-~~~l~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~---~~lge~~~p 1367 (1400)
+ ..++. .+-+-+-.+|++.+..+-.+.=+-.+.+.+....--+.+.++.-+-+---.+-.|+=.++ .++-.+=.|
T Consensus 333 llKafLD~~k~~sT~YGalkgls~l~ke~ir~~i~pn~~~y~rlv~ktle~~~e~~~~e~n~~vd~l~dalliL~~d~Lp 412 (450)
T COG5095 333 LLKAFLDREKTESTQYGALKGLSILSKEVIRTVIKPNADYYVRLVNKTLEKGNEEEIYENNRVVDLLKDALLILQSDGLP 412 (450)
T ss_pred HHHHHHhcccccchhhhhhhhhhhhchhheeeeeccchHHHHHHHHHHHhccchhhcccchHHHHHHHHHHHHHhccCCC
Confidence 2 23442 455667889999887775443332233332222222233333222222222223333333 355555555
Q ss_pred hhhhhcHHHHHHHHH
Q 000599 1368 YLERLNSTQLRLVTI 1382 (1400)
Q Consensus 1368 ~l~~L~~s~~kll~~ 1382 (1400)
-=..|.+-.-+||+-
T Consensus 413 nqr~~~~n~~~llek 427 (450)
T COG5095 413 NQRTLPPNASGLLEK 427 (450)
T ss_pred CccCCCCcHHHHHHH
Confidence 555566666666653
No 228
>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=73.48 E-value=37 Score=40.09 Aligned_cols=149 Identities=14% Similarity=0.182 Sum_probs=82.9
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQ 1243 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d----~~~~vR~~aL~~L~~l~~~~ 1243 (1400)
....++. +.+.+| +--...|+.-|..++..+....-. ....++..++.++.+ .+..+...|+..|+.|++..
T Consensus 106 ~~~~fl~-ll~~~D--~~i~~~a~~iLt~Ll~~~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~ 181 (312)
T PF03224_consen 106 PYSPFLK-LLDRND--SFIQLKAAFILTSLLSQGPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSK 181 (312)
T ss_dssp -HHHHHH-H-S-SS--HHHHHHHHHHHHHHHTSTTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSH
T ss_pred hHHHHHH-HhcCCC--HHHHHHHHHHHHHHHHcCCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcc
Confidence 3566776 444443 577888999999998877543322 113444555555543 34456788999999999887
Q ss_pred cccccccHHHHHHHHHHHh-----cCCcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhcc-CCchhhHhHHH
Q 000599 1244 KDVMEDSVEIVIEKLLHVT-----KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCI 1309 (1400)
Q Consensus 1244 ~~~~~~~~e~~l~~ll~~~-----~D~~k~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~al 1309 (1400)
..+..-+-.-.++.+++.+ .+..-.+.-.=..++-.|.-.+.++ .+++.|..+++ +.+.++-..|+
T Consensus 182 ~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~KEKvvRv~l 261 (312)
T PF03224_consen 182 EYRQVFWKSNGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSIKEKVVRVSL 261 (312)
T ss_dssp HHHHHHHTHHHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH--SHHHHHHHH
T ss_pred hhHHHHHhcCcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcccchHHHHHH
Confidence 6652111133344444444 2333444444455555665556653 27777777775 55677777778
Q ss_pred HHHHHHHhhcC
Q 000599 1310 NCLTKLVGRLS 1320 (1400)
Q Consensus 1310 k~l~~lv~~~~ 1320 (1400)
-.+..+++.-.
T Consensus 262 a~l~Nl~~~~~ 272 (312)
T PF03224_consen 262 AILRNLLSKAP 272 (312)
T ss_dssp HHHHHTTSSSS
T ss_pred HHHHHHHhccH
Confidence 87778876555
No 229
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=73.30 E-value=3e+02 Score=36.00 Aligned_cols=160 Identities=18% Similarity=0.194 Sum_probs=99.9
Q ss_pred hhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhh
Q 000599 788 CARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL 867 (1400)
Q Consensus 788 ~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~kl 867 (1400)
--|-.|+..|-.++.++ .+.-+-+.+..-|.|.|.-|..++|=.=-.+++.-.+....|...+-+++..+
T Consensus 115 ~yr~~AiR~L~~I~d~~---------m~~~iery~kqaivd~~~avSsaalvss~hll~~~~~~vkrw~neiqea~~s~- 184 (865)
T KOG1078|consen 115 LYRAAAIRALCSIIDGT---------MLQAIERYMKQAIVDKNPAVSSAALVSSYHLLPISFDVVKRWANEVQEAVNSD- 184 (865)
T ss_pred chhHHHHHHHHhhcCcc---------hhHHHHHHHHhHeeccccccchHHHHHHhhhhcccHHHHHHHHHhhhhccCcH-
Confidence 34566777777776653 12233455667788999999888887766777777778899999988776544
Q ss_pred CCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhcc--CCCchhHHHHHHHHHHHHhhhhcCCCCCCCcchHHHHHHhh
Q 000599 868 IDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDE--QRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKL 945 (1400)
Q Consensus 868 gD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~--~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i 945 (1400)
+.-+|..+..+|-.++..- -+.+..+...... -++|-+++-.......++.+ ++... ......+
T Consensus 185 ---~~m~QyHalglLyqirk~d--rla~sklv~~~~~~~~~~~~A~~~lir~~~~~l~~---~~~~~------s~~~~fl 250 (865)
T KOG1078|consen 185 ---NIMVQYHALGLLYQIRKND--RLAVSKLVQKFTRGSLKSPLAVCMLIRIASELLKE---NQQAD------SPLFPFL 250 (865)
T ss_pred ---HHHHHHHHHHHHHHHHhhh--HHHHHHHHHHHccccccchhHHHHHHHHHHHHhhh---cccch------hhHHHHH
Confidence 3368889999999998522 1233333333322 25677777666666655543 11111 1112222
Q ss_pred cccccCCCHHHHHHHHHHHHHHhhcc
Q 000599 946 TPLVHDKNTKLKEAAITCIISVYTHY 971 (1400)
Q Consensus 946 ~~l~~dks~~vR~aA~~~l~~ly~~~ 971 (1400)
=.|+-.|.--|---|...++.+|..+
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~ 276 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTN 276 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccC
Confidence 23555566667666677888888755
No 230
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.23 E-value=37 Score=42.97 Aligned_cols=142 Identities=19% Similarity=0.210 Sum_probs=102.2
Q ss_pred HHHHHhcCCChHHHHHHHHHHHHHHhhcccc-----ccccHHHHHHHHHHHhcCCcHHHHHHHHHHH-HH---HHhhcCh
Q 000599 1216 AVLEVLDDADSSVREVALSLINEMLKNQKDV-----MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCL-TV---VLSQYDP 1286 (1400)
Q Consensus 1216 ~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~-----~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al-~~---i~~~~~p 1286 (1400)
.|.+.|+-.|..||..|+.++-+.+---++. ++.-++-..-.+..++.|+-..|+..|..-+ +. .-..+||
T Consensus 178 ~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP~ 257 (1005)
T KOG1949|consen 178 ILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIPP 257 (1005)
T ss_pred HHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcCH
Confidence 4667888899999999999888777544332 3444566666777888999999988877744 22 2356888
Q ss_pred hhHHHhhhhhccC----CchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000599 1287 FRCLSVIVPLLVT----EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1287 ~~~l~~l~~~l~s----~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~ 1360 (1400)
.-++.++.-++.+ ....+|....+.|+.+... ..-...+-.++|+|--+++|..-.||-|+|.-+..+-.|
T Consensus 258 ~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n---p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~v 332 (1005)
T KOG1949|consen 258 TILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN---PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAV 332 (1005)
T ss_pred HHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC---ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhh
Confidence 8777777766641 1225677778888877632 223345667788999999999999999999888766544
No 231
>smart00802 UME Domain in UVSB PI-3 kinase, MEI-41 and ESR-1. Characteristic domain in UVSP PI-3 kinase, MEI-41 and ESR-1. Found in nucleolar proteins. Associated with FAT, FATC, PI3_PI4_kinase modules.
Probab=72.79 E-value=19 Score=35.31 Aligned_cols=72 Identities=14% Similarity=0.267 Sum_probs=60.2
Q ss_pred chhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHH
Q 000599 1301 DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNST 1375 (1400)
Q Consensus 1301 ~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s 1375 (1400)
.+..+..++.-++.+++-.+ ..+...+|.|+-.|..+++ .+|.|..|..|.-.+-..+.+ ++.|.+...-..
T Consensus 28 ~~~ek~~~i~ai~~lI~~~g-~~i~~a~pQI~acL~saL~--~~eL~~~al~~W~~~i~~L~~~~l~~ll~~~~~~ 100 (107)
T smart00802 28 PYNEKKRALRSIGFLIKLMG-KHISSALPQIMACLQSALE--IPELRSLALRCWHVLIKTLKEEELGPLLDQIFAA 100 (107)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhC--chhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 55678999999999997544 8888899999999999997 557999999999999999986 788887765443
No 232
>COG5593 Nucleic-acid-binding protein possibly involved in ribosomal biogenesis [Translation, ribosomal structure and biogenesis]
Probab=72.42 E-value=63 Score=39.56 Aligned_cols=96 Identities=13% Similarity=0.091 Sum_probs=60.3
Q ss_pred HHHHHHHhhCCchhhhHHHHHHHHHHHhccCCchh--hHHHHHHhhccC-CCchhHHHHHHHHHHHHhhhhcCCCCCCCc
Q 000599 859 ILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS--LLPALLRSLDEQ-RSPKAKLAVIEFAISSLNKHAMNSEGSGNL 935 (1400)
Q Consensus 859 ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~--~l~~l~r~l~~~-~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~ 935 (1400)
||--+++||||..+.|-.++.-.|..+-...|... +++.+.+|++.. ...+.+.-.|.+|..+.-+
T Consensus 229 Ll~L~INKlGDk~~kvsskasY~ilkLe~~hP~mk~VV~d~Iedf~f~pn~~~~s~yyalitLnqt~l~----------- 297 (821)
T COG5593 229 LLHLFINKLGDKRDKVSSKASYVILKLELLHPGMKEVVLDGIEDFYFKPNDLFRSRYYALITLNQTELE----------- 297 (821)
T ss_pred HHHHHHHhhccchhhhhhhhhHHHHHHHhcCCchhHHHHhhhhHheeccccccceeeeeehhhHHHHHh-----------
Confidence 34445778999999999999999998887777654 344444444321 1224444333333322211
Q ss_pred chHHHHHHhhcccccCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHH
Q 000599 936 GILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQ 988 (1400)
Q Consensus 936 ~~~~~~l~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~ 988 (1400)
+ --++..+.|+.+|... |+.++.++|++..
T Consensus 298 -----------------~--~e~~van~lv~vyf~~----f~kfl~n~~ke~~ 327 (821)
T COG5593 298 -----------------N--REKAVANKLVKVYFSI----FRKFLENIPKEHR 327 (821)
T ss_pred -----------------h--hHHHHHHHHHHHHHHH----HHHHHhcCchhhc
Confidence 0 1234556788999654 8888999998887
No 233
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=71.84 E-value=5.9 Score=31.81 Aligned_cols=31 Identities=35% Similarity=0.492 Sum_probs=25.4
Q ss_pred cchhhhhhhHHHHHHhhCCCChhHHHHHHHHH
Q 000599 152 TELTLQRAILPPILQMLNDPNPGVREAAILCI 183 (1400)
Q Consensus 152 ~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l 183 (1400)
..+.. +.+...+...|.|+++.||++|.+++
T Consensus 12 ~ll~~-~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 12 TLLDS-SDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred cccch-HHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 33444 57888899999999999999999874
No 234
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=71.76 E-value=6.1 Score=31.20 Aligned_cols=29 Identities=31% Similarity=0.683 Sum_probs=26.7
Q ss_pred hhHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 000599 159 AILPPILQMLNDPNPGVREAAILCIEEMY 187 (1400)
Q Consensus 159 ~~lp~l~~~L~d~n~~VR~aA~~~l~~l~ 187 (1400)
-.+|.++.+|.+.+.+|++.|..+|..|.
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 47899999999999999999999998874
No 235
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=71.73 E-value=13 Score=45.71 Aligned_cols=115 Identities=18% Similarity=0.212 Sum_probs=82.6
Q ss_pred HHhhcCCCCCCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHH--hhccccCCCc
Q 000599 775 DALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLA--DIIPSCRKPF 852 (1400)
Q Consensus 775 ~~l~~~~~~s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~--~li~~~~~~l 852 (1400)
-+|. .-+-+|=..-+--|..+..+|...+.. +...-...++..+.+-+..+|++|+..+|.++. .++....+.-
T Consensus 259 ~llk--~WP~t~s~Kev~FL~el~~il~~~~~~--~f~~i~~~lf~~la~ci~S~h~qVAErAl~~w~n~~~~~li~~~~ 334 (409)
T PF01603_consen 259 GLLK--HWPKTNSQKEVLFLNELEEILEVLPPE--EFQKIMVPLFKRLAKCISSPHFQVAERALYFWNNEYFLSLISQNS 334 (409)
T ss_dssp HHHH--HS-SS-HHHHHHHHHHHHHHHTT--HH--HHHHHHHHHHHHHHHHHTSSSHHHHHHHHGGGGSHHHHHHHHCTH
T ss_pred HHHH--hCCCCCchhHHHHHHHHHHHHHhcCHH--HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHCCHHHHHHHHhCh
Confidence 3455 455666666666778888888875542 333456688999999999999999999998887 3466666666
Q ss_pred hhHHHHHHHHHHHhh-CCchhhhHHHHHHHHHHHhccCCchhh
Q 000599 853 ESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYSVDSL 894 (1400)
Q Consensus 853 ~~~l~~ll~~L~~kl-gD~k~~vr~~~~~~L~~~~~~~~~~~~ 894 (1400)
+.-+..+.|+|.... ++=...||..+..+|..+++ .+++..
T Consensus 335 ~~i~p~i~~~L~~~~~~HWn~~Vr~~a~~vl~~l~~-~d~~lf 376 (409)
T PF01603_consen 335 RVILPIIFPALYRNSKNHWNQTVRNLAQNVLKILME-MDPKLF 376 (409)
T ss_dssp HHHHHHHHHHHSSTTSS-SSTTHHHHHHHHHHHHHT-TSHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-hCHHHH
Confidence 777888888888766 57788999999999999986 444433
No 236
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=71.69 E-value=80 Score=41.54 Aligned_cols=179 Identities=20% Similarity=0.184 Sum_probs=112.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHH----------------
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLAS---------------- 67 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~---------------- 67 (1400)
++.++.++.--.|..|+..+.++++...... ...++..+.+.-.|.-|.+.+.+-.++..
T Consensus 477 ~~~rClDkaaavR~~al~s~tk~l~l~~~~~----~~sIl~~~inS~~d~~fs~ves~~~~~~~~~~~~s~~~~tt~~l~ 552 (1529)
T KOG0413|consen 477 VYMRCLDKAAAVRLHALNSLTKILQLQSHRE----AFSILCATINSEMDEKFSAVESLEDLNVSGKAPSSKTKKTTDLLL 552 (1529)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccc----hHHHHHHhcCCccccchhHHHhchhhhhcccCcccccccchhhcC
Confidence 4667788999999999999999997754321 12333333333333334444333332221
Q ss_pred ----HH-HHhhhhhHh----hhhhhHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhchhHHHHHH---hhhhhhcCChhH
Q 000599 68 ----AA-VLSGEHFKL----HFNALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSPTIIVERA---GSYAWTHRSWRV 134 (1400)
Q Consensus 68 ----l~-~~l~~~~~~----~~~~ilp~LleKLg-D~K~~vre~a~~~L~~l~e~~~p~~V~e~l---~~~~~~~Knpkv 134 (1400)
++ +.-++.+.. .-..++--|+-++. |.|..|+.+|...|..+...|.-...++.. +...-....--|
T Consensus 553 ~~~~ii~d~~~~~~~~ge~~~e~~V~~mi~Rr~~~d~k~~v~k~a~~~l~S~l~~cD~~~~fe~~L~iLq~lCrd~~vsv 632 (1529)
T KOG0413|consen 553 DEQQIIQDFKLKLMNKGETRVEKDVVYMIVRRLSTDDKAPVKKAACSLLKSYLSYCDEASKFEVVLSILQMLCRDRMVSV 632 (1529)
T ss_pred cchhhhhhcchhhhhccccHHHHHHHHHHHHHhccCCCcccchhhHHHHHHHHhccchhhcchhHHHHHHHHhcCcchHH
Confidence 10 000111111 13345666777786 999999999999999988776655555542 222344555556
Q ss_pred HHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 000599 135 REEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMY 187 (1400)
Q Consensus 135 r~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~ 187 (1400)
|...+.-|.+.+. ..+..+.+++.++-.++..+.|....|-+.|+.++-.+.
T Consensus 633 rk~~~~Sltel~~-~~pr~~~~~~~wl~~li~~~~d~es~v~e~a~~~i~k~l 684 (1529)
T KOG0413|consen 633 RKTGADSLTELML-RDPRLFSLSSKWLHTLISMLNDTESDVTEHARKLIMKVL 684 (1529)
T ss_pred HHHHHHHHHHHHh-hCchhhhhhHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 7777777766443 234455677889999999999999999999999776554
No 237
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=71.52 E-value=60 Score=43.15 Aligned_cols=153 Identities=20% Similarity=0.166 Sum_probs=97.2
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHH-HHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhhcc-ccccccHHHHHHHHHH
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYF-NQILTAVLEVLDDA-DSSVREVALSLINEMLKNQK-DVMEDSVEIVIEKLLH 1260 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f-~~ll~~Ll~~l~d~-~~~vR~~aL~~L~~l~~~~~-~~~~~~~e~~l~~ll~ 1260 (1400)
+|+|.-|..-|+.+++.... .-..++ +.++...++.|+|. .+-.|..+++.|..|-.... ++|.---...-.|++.
T Consensus 571 ~EqrtmaAFVLAviv~nf~l-GQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~ 649 (1387)
T KOG1517|consen 571 PEQRTMAAFVLAVIVRNFKL-GQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLIL 649 (1387)
T ss_pred HHHHHHHHHHHHHHHcccch-hHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHH
Confidence 47888788888877764321 111233 35666788899884 56699999999998887653 5555555567789999
Q ss_pred HhcCCcHHHHHHHHHHHHHHHhhcCh---hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHH
Q 000599 1261 VTKDAVPKVSNEAEHCLTVVLSQYDP---FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFE 1337 (1400)
Q Consensus 1261 ~~~D~~k~V~~aA~~al~~i~~~~~p---~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~ 1337 (1400)
.+.|+..+|+.||.-|+.+++....= ++...+ ...-.|+.....+|..- ... .=.+..
T Consensus 650 ~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~-----------~~~~~l~~~~~~~E~~i----~~~----~~~ll~ 710 (1387)
T KOG1517|consen 650 LLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVV-----------EEEIDLDDERTSIEDLI----IKG----LMSLLA 710 (1387)
T ss_pred HhcCccHHHHHHHHHHHHHHhcccccccchhhhhh-----------hhhhcchhhhhhHHHHH----Hhh----HHHHHH
Confidence 99999999999999999999876421 110000 00001121111222111 111 114567
Q ss_pred HhcCCCHHHHHHHHHHHHH
Q 000599 1338 AFGNQSADVRKTVVFCLVD 1356 (1400)
Q Consensus 1338 ~~~d~~seVRkaAv~~lv~ 1356 (1400)
.+.|-.+-||++.+.++..
T Consensus 711 ~vsdgsplvr~ev~v~ls~ 729 (1387)
T KOG1517|consen 711 LVSDGSPLVRTEVVVALSH 729 (1387)
T ss_pred HHhccchHHHHHHHHHHHH
Confidence 7889999999998877653
No 238
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=70.46 E-value=21 Score=39.25 Aligned_cols=89 Identities=15% Similarity=0.191 Sum_probs=64.8
Q ss_pred HHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHH
Q 000599 1274 EHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFC 1353 (1400)
Q Consensus 1274 ~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~ 1353 (1400)
..++..+.... +...+.+..++.+++.=.+..++-++...+.. ..++.++..+...++|.+-.|||+.-.+
T Consensus 108 ~~~~~~~~~~~--~~~~~~~~~W~~s~~~w~rR~~~v~~~~~~~~-------~~~~~~l~~~~~~~~d~~~~vq~ai~w~ 178 (213)
T PF08713_consen 108 SKLLGPLLKKH--PEALELLEKWAKSDNEWVRRAAIVMLLRYIRK-------EDFDELLEIIEALLKDEEYYVQKAIGWA 178 (213)
T ss_dssp HHHHHHHHHHH--GGHHHHHHHHHHCSSHHHHHHHHHCTTTHGGG-------CHHHHHHHHHHHCTTGS-HHHHHHHHHH
T ss_pred HHHHHHHHHhh--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHh-------cCHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence 44444444333 67888999999887644555556555455544 4556677888889999999999999999
Q ss_pred HHHHHHHhhhhcchhhhh
Q 000599 1354 LVDIYIMLGKAFLPYLER 1371 (1400)
Q Consensus 1354 lv~~~~~lge~~~p~l~~ 1371 (1400)
|-.+...-.+.+.+||..
T Consensus 179 L~~~~~~~~~~v~~~l~~ 196 (213)
T PF08713_consen 179 LREIGKKDPDEVLEFLQK 196 (213)
T ss_dssp HHHHCTT-HHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHH
Confidence 999998888888899887
No 239
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=70.39 E-value=65 Score=40.36 Aligned_cols=159 Identities=12% Similarity=0.155 Sum_probs=104.4
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHHhh--cccc-ccccHHHHHHHHHHHhcCCcHHH
Q 000599 1194 LIKASVANDHSIWTKYFNQILTAVLEVLDDA-DSSVREVALSLINEMLKN--QKDV-MEDSVEIVIEKLLHVTKDAVPKV 1269 (1400)
Q Consensus 1194 L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~-~~~vR~~aL~~L~~l~~~--~~~~-~~~~~e~~l~~ll~~~~D~~k~V 1269 (1400)
+..+++-+....-++....++..++.+...+ +...-+.||.+|..+... .+.. +.++ ..+|..+.+.. ..
T Consensus 158 l~nviKfn~~~l~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl~~~-i~vLCsi~~~~-----~l 231 (464)
T PF11864_consen 158 LVNVIKFNFNYLDEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESLSPC-IEVLCSIVNSV-----SL 231 (464)
T ss_pred HHHHHhcCCCCCCHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHHHHH-HHHHhhHhccc-----cc
Confidence 4444544433332356778888888887664 444567899999999873 2322 2222 23344442222 56
Q ss_pred HHHHHHHHHHHHhhcChhhHHHhhhhhcc--C----CchhhHhHHHHHHHHHHhhcCHHHHH---hhhhhhHHHHHHHhc
Q 000599 1270 SNEAEHCLTVVLSQYDPFRCLSVIVPLLV--T----EDEKTLVTCINCLTKLVGRLSQEELM---AQLPSFLPALFEAFG 1340 (1400)
Q Consensus 1270 ~~aA~~al~~i~~~~~p~~~l~~l~~~l~--s----~~~~~~~~alk~l~~lv~~~~~~~l~---~~l~~liP~l~~~~~ 1340 (1400)
...+-.+++.|++.-.-...+..|+.+|. + .+.....+|+.+++.++-..+.+.+. -.+..++|++..++.
T Consensus 232 ~~~~w~~m~nL~~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al~ 311 (464)
T PF11864_consen 232 CKPSWRTMRNLLKSHLGHSAIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNALK 311 (464)
T ss_pred chhHHHHHHHHHcCccHHHHHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhccccCCcceecccHHHHHHHHHHHHh
Confidence 66777899999987667788899999993 2 35567889999999998666434332 233459999999999
Q ss_pred CCCHHHHHHHHHHHHHHH
Q 000599 1341 NQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1341 d~~seVRkaAv~~lv~~~ 1358 (1400)
-.++-|=-....++-.+-
T Consensus 312 ~~~~~v~~eIl~~i~~ll 329 (464)
T PF11864_consen 312 SNSPRVDYEILLLINRLL 329 (464)
T ss_pred CCCCeehHHHHHHHHHHH
Confidence 888777666666544444
No 240
>PF05536 Neurochondrin: Neurochondrin
Probab=68.95 E-value=69 Score=40.87 Aligned_cols=183 Identities=16% Similarity=0.185 Sum_probs=116.5
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHH-----Hhhhcc------CCcch-HHHHHHHHHHH
Q 000599 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCC-----LDLLKD------NNFKV-SQGALQSLASA 68 (1400)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l-----~~~l~D------sN~~V-~~~aL~~l~~l 68 (1400)
++.++..|++++=..|..|+--+.++++..+. +......+.+.+ ..+++- .+... ...|+.+|..|
T Consensus 7 l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~--~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f 84 (543)
T PF05536_consen 7 LEKCLSLLKSADDTERFAGLLLVTKLLDADDE--DSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAF 84 (543)
T ss_pred HHHHHHHhccCCcHHHHHHHHHHHHcCCCchh--hHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHH
Confidence 36788999999988999999999999875321 111111233322 233332 23333 34677788777
Q ss_pred HHHhhhhh--HhhhhhhHHHHHHHhCCCCh-hHHHHHHHHHHHHHHH-hchhHH-----HHHHhhhhhhcCChhHHHHHH
Q 000599 69 AVLSGEHF--KLHFNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEV-SSPTII-----VERAGSYAWTHRSWRVREEFA 139 (1400)
Q Consensus 69 ~~~l~~~~--~~~~~~ilp~LleKLgD~K~-~vre~a~~~L~~l~e~-~~p~~V-----~e~l~~~~~~~Knpkvr~~~l 139 (1400)
+. ...+ .+.+-..+|.|++-+...-. .+.+.+.++|..++.. .+++.+ +..+.+ ...+ ++...+..+
T Consensus 85 ~~--~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~e-i~~~-~~~~~E~Al 160 (543)
T PF05536_consen 85 CR--DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCE-IIPN-QSFQMEIAL 160 (543)
T ss_pred cC--ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHH-HHHh-CcchHHHHH
Confidence 64 2333 25577789999998865555 7888999999999842 233333 334444 2333 788888888
Q ss_pred HHHHHHHHhccCcch-----hhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhh
Q 000599 140 RTVTSAIGLFSATEL-----TLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYA 190 (1400)
Q Consensus 140 ~~L~~~l~~fg~~~l-----~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~ 190 (1400)
..+...+...+.+.. .+ ..+++.+...+......-+-....+|..+....
T Consensus 161 ~lL~~Lls~~~~~~~~~~~~~l-~~il~~La~~fs~~~~~~kfell~~L~~~L~~~ 215 (543)
T PF05536_consen 161 NLLLNLLSRLGQKSWAEDSQLL-HSILPSLARDFSSFHGEDKFELLEFLSAFLPRS 215 (543)
T ss_pred HHHHHHHHhcchhhhhhhHHHH-HHHHHHHHHHHHhhccchHHHHHHHHHHhcCcC
Confidence 888887777664322 22 456677777777666666777777777766655
No 241
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=68.59 E-value=19 Score=45.67 Aligned_cols=132 Identities=19% Similarity=0.181 Sum_probs=83.3
Q ss_pred hhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhh
Q 000599 48 DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAW 127 (1400)
Q Consensus 48 ~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~ 127 (1400)
..+.|.++.....++-.+...- +|.--...+..+++.- ..|.++-||.+|.-+|--++ .-+|+.+...+- ..-
T Consensus 526 el~~dkdpilR~~Gm~t~alAy--~GTgnnkair~lLh~a---VsD~nDDVrRaAVialGFVl-~~dp~~~~s~V~-lLs 598 (929)
T KOG2062|consen 526 ELLRDKDPILRYGGMYTLALAY--VGTGNNKAIRRLLHVA---VSDVNDDVRRAAVIALGFVL-FRDPEQLPSTVS-LLS 598 (929)
T ss_pred HHhcCCchhhhhhhHHHHHHHH--hccCchhhHHHhhccc---ccccchHHHHHHHHHheeeE-ecChhhchHHHH-HHh
Confidence 4566777776666654433221 1222233344444432 36888889998887776554 224544433332 246
Q ss_pred hcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhCh
Q 000599 128 THRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGP 192 (1400)
Q Consensus 128 ~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~ 192 (1400)
.|-||.||-+..-.|--+.---|. +..+..+-.+..|++.-||..|+-.+.-|.....+
T Consensus 599 es~N~HVRyGaA~ALGIaCAGtG~------~eAi~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~ 657 (929)
T KOG2062|consen 599 ESYNPHVRYGAAMALGIACAGTGL------KEAINLLEPLTSDPVDFVRQGALIALAMIMIQQTE 657 (929)
T ss_pred hhcChhhhhhHHHHHhhhhcCCCc------HHHHHHHhhhhcChHHHHHHHHHHHHHHHHHhccc
Confidence 788999999887776533322222 57778888889999999999999998888765543
No 242
>PF01603 B56: Protein phosphatase 2A regulatory B subunit (B56 family); InterPro: IPR002554 Protein phosphatase 2A (PP2A) is a major intracellular protein phosphatase that regulates multiple aspects of cell growth and metabolism. The ability of this widely distributed heterotrimeric enzyme to act on a diverse array of substrates is largely controlled by the nature of its regulatory B subunit. There are multiple families of B subunits, this family is called the B56 family [].; GO: 0008601 protein phosphatase type 2A regulator activity, 0007165 signal transduction, 0000159 protein phosphatase type 2A complex; PDB: 2NYM_B 2NYL_B 2IAE_E 2NPP_B 3FGA_B 2JAK_A.
Probab=68.50 E-value=97 Score=38.12 Aligned_cols=203 Identities=13% Similarity=0.121 Sum_probs=117.4
Q ss_pred HHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHh-HHHHHHHHHhhhc-cCCcchHHHHHHHHHHHHHHhhhhhHhh
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-VTSLVDCCLDLLK-DNNFKVSQGALQSLASAAVLSGEHFKLH 79 (1400)
Q Consensus 2 e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-~~~lv~~l~~~l~-DsN~~V~~~aL~~l~~l~~~l~~~~~~~ 79 (1400)
..+++.+.|.|-.+|.....-|..+....... -.- ...+.+.+...+- ...+......|++++.++.+....++..
T Consensus 136 ~~Ll~l~~S~D~rER~~lk~~l~~iy~k~~~~--r~~Ir~~i~~~~~~fi~e~~~~~gI~elLeil~sii~gf~~plk~e 213 (409)
T PF01603_consen 136 KKLLELFDSPDPRERDYLKTILHRIYGKFPNL--RSFIRKSINNIFYRFIYETERHNGIAELLEILGSIINGFAVPLKEE 213 (409)
T ss_dssp HHHHHTTTSSTHHHHHHHHHHHHHHHHH-TTT--HHHHHHHHHHHHHHHHHTTS--STHHHHHHHHHHHHTT--SS--HH
T ss_pred HHHHHHcCCCCHHHHHHHHHHHHHHHHHhhhh--HHHHHHHHHHHHHHHhcCcccccCHHHHHHHHHHHHhccCCCCcHH
Confidence 35788899999999998888888887653221 111 1122233333333 5688889999999999998765433322
Q ss_pred -hhhhHHHHHHHhCCCCh-hHHHHHHHHHHHHHHH--hchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchh
Q 000599 80 -FNALVPAVVERLGDAKQ-PVRDAARRLLLTLMEV--SSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELT 155 (1400)
Q Consensus 80 -~~~ilp~LleKLgD~K~-~vre~a~~~L~~l~e~--~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~ 155 (1400)
...+...|+--.+.+.- .-...-..++..+++. .-...++..++. .|-.-|+.=..-.+..|..+++......+.
T Consensus 214 h~~fl~~vllPLh~~~~~~~y~~~L~~~~~~f~~kdp~l~~~~i~~llk-~WP~t~s~Kev~FL~el~~il~~~~~~~f~ 292 (409)
T PF01603_consen 214 HKQFLRKVLLPLHKSPHLSSYHQQLSYCVVQFLEKDPSLAEPVIKGLLK-HWPKTNSQKEVLFLNELEEILEVLPPEEFQ 292 (409)
T ss_dssp HHHHHHHTTGGGGGSTGGGGTHHHHHHHHHHHHHH-GGGHHHHHHHHHH-HS-SS-HHHHHHHHHHHHHHHTT--HHHHH
T ss_pred HHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHH-hCCCCCchhHHHHHHHHHHHHHhcCHHHHH
Confidence 11122222222222221 1346677788888874 122467777776 566666655556677777777766544332
Q ss_pred -hhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhHHHHHHHH
Q 000599 156 -LQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARL 215 (1400)
Q Consensus 156 -l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~ 215 (1400)
+..++...+.+|+..++-.|-+.|.. -|-.+.+...+. +-....+..|...+
T Consensus 293 ~i~~~lf~~la~ci~S~h~qVAErAl~------~w~n~~~~~li~--~~~~~i~p~i~~~L 345 (409)
T PF01603_consen 293 KIMVPLFKRLAKCISSPHFQVAERALY------FWNNEYFLSLIS--QNSRVILPIIFPAL 345 (409)
T ss_dssp HHHHHHHHHHHHHHTSSSHHHHHHHHG------GGGSHHHHHHHH--CTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHH------HHCCHHHHHHHH--hChHHHHHHHHHHH
Confidence 34678899999999999999988764 455555555554 33344444444433
No 243
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=68.41 E-value=48 Score=34.92 Aligned_cols=129 Identities=12% Similarity=0.052 Sum_probs=80.4
Q ss_pred cCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH--------hchhHHHHHHh
Q 000599 52 DNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEV--------SSPTIIVERAG 123 (1400)
Q Consensus 52 DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~--------~~p~~V~e~l~ 123 (1400)
.....+...++=++..+.+..++.+...+..++..++++-... -.-.+..++.+++.. ..-+.+++.++
T Consensus 16 ~~~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d---~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~ 92 (157)
T PF11701_consen 16 RQPEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMD---SLIIAFSALTALFPGPPDVGSELFLSEGFLESLL 92 (157)
T ss_dssp TTSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCC---HHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHH
T ss_pred CCCHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccch---hHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHH
Confidence 3455677777777777767777778777777777777554321 233455555555431 22234566666
Q ss_pred hhhhh--cCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhC-CCChh-HHHHHHHHHHH
Q 000599 124 SYAWT--HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLN-DPNPG-VREAAILCIEE 185 (1400)
Q Consensus 124 ~~~~~--~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~-d~n~~-VR~aA~~~l~~ 185 (1400)
+ ... .++..+...+++.|..+...-.....- .+.+++++.+++. +.|.. ||..|.-.|+.
T Consensus 93 ~-~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I-~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 93 P-LASRKSKDRKVQKAALELLSAACIDKSCRTFI-SKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp H-HHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCC-HHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred H-HHhcccCCHHHHHHHHHHHHHHHccHHHHHHH-HHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 5 444 788888888888887653322221122 2789999999995 55566 89988888775
No 244
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=68.01 E-value=89 Score=32.23 Aligned_cols=92 Identities=14% Similarity=0.235 Sum_probs=67.4
Q ss_pred HHHHHHHHHhhCCchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhcCCC--CCCC
Q 000599 857 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSE--GSGN 934 (1400)
Q Consensus 857 ~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~--~~~~ 934 (1400)
..-...++.+|.-++++++.+++-||+. .--.+.+++.+++-+.+. +-..|.-++-|+-. |.+.....+ ....
T Consensus 7 r~~F~~~L~~L~aS~qSi~kaa~fAlk~---~~~~edL~~cIle~le~~-~lN~R~nI~~fID~-l~e~~~~~~~~~~~Y 81 (139)
T PF12243_consen 7 RMQFTQLLRRLNASQQSIQKAAQFALKN---RDMEEDLWSCILEQLEKE-NLNTRINIFYFIDS-LCESSQKSKKYNYPY 81 (139)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHc---cccHHHHHHHHHHHHhcc-chhhHHHHHHHHHH-HHHHHHhcccccchh
Confidence 3456788999999999999999999998 334688899999888654 77889999988754 555433333 2223
Q ss_pred cchHHHHHHhhcccccCCC
Q 000599 935 LGILKLWLAKLTPLVHDKN 953 (1400)
Q Consensus 935 ~~~~~~~l~~i~~l~~dks 953 (1400)
...+...|.+|+.+..+.+
T Consensus 82 v~~l~~dL~~Iv~~V~P~~ 100 (139)
T PF12243_consen 82 VSMLQRDLPRIVDAVAPPD 100 (139)
T ss_pred HHHHHHHHHHHHHHhCCCC
Confidence 3567778999988876533
No 245
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=67.66 E-value=1e+02 Score=37.89 Aligned_cols=178 Identities=15% Similarity=0.196 Sum_probs=106.1
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHH-----H-HHHHHHHHHhcC---CChHHHHHHHHHHHH
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYF-----N-QILTAVLEVLDD---ADSSVREVALSLINE 1238 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f-----~-~ll~~Ll~~l~d---~~~~vR~~aL~~L~~ 1238 (1400)
.|+.+++.+..... -+.-+-++.-|..++..+........+ + .++. ++..|.. +|..+.+ .|..|.+
T Consensus 229 ~i~~l~~i~k~s~K--EKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv~~~l~~-~l~~L~~rk~~DedL~e-dl~~L~e 304 (429)
T cd00256 229 LIQDLSDILKESTK--EKVIRIVLAIFRNLISKRVDREVKKTAALQMVQCKVLK-TLQSLEQRKYDDEDLTD-DLKFLTE 304 (429)
T ss_pred HHHHHHHHHHhhhh--HHHHHHHHHHHHHHhhcccccchhhhHHHHHHHcChHH-HHHHHhcCCCCcHHHHH-HHHHHHH
Confidence 36666666655532 122233666777777654211111111 1 2222 3333333 4666776 7888888
Q ss_pred HHhhcc---ccccccHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc-CCchhhHhHHHHH
Q 000599 1239 MLKNQK---DVMEDSVEIVIEKLLH---VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV-TEDEKTLVTCINC 1311 (1400)
Q Consensus 1239 l~~~~~---~~~~~~~e~~l~~ll~---~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~-s~~~~~~~~alk~ 1311 (1400)
++...- ..|+.|..-+....|+ .|.+. +.=++-|..-- . +-..+++.|..++. +.+-.+...||.=
T Consensus 305 ~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se-~FW~EN~~kf~----~--~~~~llk~L~~iL~~s~d~~~laVAc~D 377 (429)
T cd00256 305 ELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSE-KFWRENADRLN----E--KNYELLKILIHLLETSVDPIILAVACHD 377 (429)
T ss_pred HHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCc-hHHHHHHHHHH----h--cchHHHHHHHHHHhcCCCcceeehhhhh
Confidence 887642 4588996555555554 22222 33333333221 1 22578888888884 5566677788888
Q ss_pred HHHHHhhcC--HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1312 LTKLVGRLS--QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1312 l~~lv~~~~--~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
++.++.++| +..+.. +. .-..|.+.|.|.+++||+.|..|+=.++
T Consensus 378 ige~vr~~P~gr~i~~~-lg-~K~~vM~Lm~h~d~~Vr~eAL~avQklm 424 (429)
T cd00256 378 IGEYVRHYPRGKDVVEQ-LG-GKQRVMRLLNHEDPNVRYEALLAVQKLM 424 (429)
T ss_pred HHHHHHHCccHHHHHHH-cC-cHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 999998874 444543 22 3556889999999999999999987664
No 246
>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]
Probab=67.14 E-value=74 Score=38.33 Aligned_cols=125 Identities=14% Similarity=0.241 Sum_probs=77.4
Q ss_pred CChHHHHHHHHHHHHHHhhcc---ccccccHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhc
Q 000599 1224 ADSSVREVALSLINEMLKNQK---DVMEDSVEIVIEKLLH---VTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLL 1297 (1400)
Q Consensus 1224 ~~~~vR~~aL~~L~~l~~~~~---~~~~~~~e~~l~~ll~---~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l 1297 (1400)
++..+++ .+..|.+.++.-- ..|++|.--+....|+ .|++. +.=++-|.. ++ =+-..++++|..+|
T Consensus 304 sDEDL~~-di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e-~FW~eNa~r-ln-----ennyellkiL~~lL 375 (442)
T KOG2759|consen 304 SDEDLVD-DIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSE-KFWRENADR-LN-----ENNYELLKILIKLL 375 (442)
T ss_pred CcHHHHH-HHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCcccccc-chHHHhHHH-Hh-----hccHHHHHHHHHHH
Confidence 3455554 6677777666532 3477776556655554 22222 222332222 21 13457999999999
Q ss_pred cCCchh-hHhHHHHHHHHHHhhcCHHH--HHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1298 VTEDEK-TLVTCINCLTKLVGRLSQEE--LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1298 ~s~~~~-~~~~alk~l~~lv~~~~~~~--l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
.+.+.| +.-.|+.=++..|+.+|..- ++..- --..+.+.++|.|++||..|..|.=.+.
T Consensus 376 e~s~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~g--gKe~vM~Llnh~d~~Vry~ALlavQ~lm 437 (442)
T KOG2759|consen 376 ETSNDPIILCVACHDIGEYVRHYPEGKAVVEKYG--GKERVMNLLNHEDPEVRYHALLAVQKLM 437 (442)
T ss_pred hcCCCCceeehhhhhHHHHHHhCchHhHHHHHhc--hHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 876644 56667888999998887533 22211 1345678899999999999999855443
No 247
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=66.00 E-value=74 Score=41.39 Aligned_cols=168 Identities=16% Similarity=0.190 Sum_probs=88.2
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC----CChHHHHHHHHHHHHHHhhcc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD----ADSSVREVALSLINEMLKNQK 1244 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d----~~~~vR~~aL~~L~~l~~~~~ 1244 (1400)
+.-+++++.... .+..+....+..|...++.-. ..++..++++++. .+..++..|+..+..|++..-
T Consensus 397 v~~i~~~I~~~~-~~~~ea~~~l~~l~~~~~~Pt--------~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c 467 (618)
T PF01347_consen 397 VKFIKDLIKSKK-LTDDEAAQLLASLPFHVRRPT--------EELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYC 467 (618)
T ss_dssp HHHHHHHHHTT--S-HHHHHHHHHHHHHT-------------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCC-CCHHHHHHHHHHHHhhcCCCC--------HHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCcee
Confidence 344555555533 223344444444443332222 3344455555553 345588889888887777531
Q ss_pred -c-------------cccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCC---chhhHhH
Q 000599 1245 -D-------------VMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTE---DEKTLVT 1307 (1400)
Q Consensus 1245 -~-------------~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~---~~~~~~~ 1307 (1400)
. ..+.|+..+...+-++......+....+..||.. +.-+..++.+.+++..+ .-.+++.
T Consensus 468 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN----~g~~~~i~~l~~~i~~~~~~~~~~R~~ 543 (618)
T PF01347_consen 468 VNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGN----LGHPESIPVLLPYIEGKEEVPHFIRVA 543 (618)
T ss_dssp TT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHH----HT-GGGHHHHHTTSTTSS-S-HHHHHH
T ss_pred ecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhc----cCCchhhHHHHhHhhhccccchHHHHH
Confidence 1 1333444444444444444333444444444433 34457999999999766 4458889
Q ss_pred HHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC--CCHHHHHHHHHHHHHH
Q 000599 1308 CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN--QSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1308 alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d--~~seVRkaAv~~lv~~ 1357 (1400)
|+..|.++...++ +.+ .+.+..-|.| .++|||-||+..|+..
T Consensus 544 Ai~Alr~~~~~~~-~~v-------~~~l~~I~~n~~e~~EvRiaA~~~lm~~ 587 (618)
T PF01347_consen 544 AIQALRRLAKHCP-EKV-------REILLPIFMNTTEDPEVRIAAYLILMRC 587 (618)
T ss_dssp HHHTTTTGGGT-H-HHH-------HHHHHHHHH-TTS-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHhhcCc-HHH-------HHHHHHHhcCCCCChhHHHHHHHHHHhc
Confidence 9998888876554 333 3334444443 4688999998886643
No 248
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=65.51 E-value=2.6e+02 Score=32.21 Aligned_cols=179 Identities=18% Similarity=0.259 Sum_probs=112.0
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHh-----------------HHHHHHHHHhhhccCCcchHHHHHHHHH
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAE-----------------VTSLVDCCLDLLKDNNFKVSQGALQSLA 66 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~-----------------~~~lv~~l~~~l~DsN~~V~~~aL~~l~ 66 (1400)
.++.|.+..=.+=.+|++-|.+++...+ ++..+ +.-+...+.+++..++ ..+.+++++.
T Consensus 12 ~vAcL~S~~E~EF~~aL~lL~~~l~k~d--l~~~~~~~~L~~~~p~~we~~~f~Glq~Ll~KGL~Ss~--t~e~tl~lL~ 87 (262)
T PF14225_consen 12 AVACLESIHEHEFLEALSLLNKLLDKLD--LDDPDVRDVLESSQPQLWEWGNFEGLQPLLLKGLRSSS--TYELTLRLLS 87 (262)
T ss_pred HHHhhcCCcHHHHHHHHHHHHHHHhhcC--CchHHHHHHHHHhCCccccCCCchhHHHHHhCccCCCC--cHHHHHHHHH
Confidence 3566677777777788888888876532 11111 1122223334444442 5567777887
Q ss_pred HHHHHh-----h---hhhHhhhhhhHHHHHHHhCCCC-----hhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChh
Q 000599 67 SAAVLS-----G---EHFKLHFNALVPAVVERLGDAK-----QPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWR 133 (1400)
Q Consensus 67 ~l~~~l-----~---~~~~~~~~~ilp~LleKLgD~K-----~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpk 133 (1400)
.++... + ..+--.+-..+|.++..+.+.+ +.+++.| +.|..+++..+-. =+.+++. .+..+..|
T Consensus 88 ~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A-~~La~~a~~~~~~-~La~il~-~ya~~~fr 164 (262)
T PF14225_consen 88 RLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIA-EALAQVAEAQGLP-NLARILS-SYAKGRFR 164 (262)
T ss_pred HHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHH-HHHHHHHHhCCCc-cHHHHHH-HHHhcCCC
Confidence 776531 1 1334456778899999998877 3344333 5566666543222 2334443 33333348
Q ss_pred HHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhC
Q 000599 134 VREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 134 vr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
-+.+.+..+...+.++=...+.+ .++-.+..+|++.-+.+|...+++|..+..++.
T Consensus 165 ~~~dfl~~v~~~l~~~f~P~~~~--~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d 220 (262)
T PF14225_consen 165 DKDDFLSQVVSYLREAFFPDHEF--QILTFLLGLLENGPPWLRRKTLQILKVLLPHVD 220 (262)
T ss_pred CHHHHHHHHHHHHHHHhCchhHH--HHHHHHHHHHhCCcHHHHHHHHHHHHHHhcccc
Confidence 88888888888877643222333 677889999999999999999999999987754
No 249
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=65.17 E-value=2.9e+02 Score=32.62 Aligned_cols=57 Identities=7% Similarity=0.091 Sum_probs=43.7
Q ss_pred cchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHH
Q 000599 341 RRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTM 397 (1400)
Q Consensus 341 lrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i 397 (1400)
.-.+|.++||..|.-|+..-...-.+....=+..|+.........+...+..||+-+
T Consensus 386 ~~a~vQrnac~~IRNiv~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 386 VAAQVQRNACNMIRNIVVRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 356799999999999988877655666666677788777777777777777777754
No 250
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=64.03 E-value=62 Score=34.10 Aligned_cols=95 Identities=17% Similarity=0.163 Sum_probs=62.0
Q ss_pred HHHHHHHHHHHHHHHh--ch----hHHHHHHhhhhhh-cCChhHHHHHHHHHHHHHHhccC--cchhhhhhhHHHHHHhh
Q 000599 98 VRDAARRLLLTLMEVS--SP----TIIVERAGSYAWT-HRSWRVREEFARTVTSAIGLFSA--TELTLQRAILPPILQML 168 (1400)
Q Consensus 98 vre~a~~~L~~l~e~~--~p----~~V~e~l~~~~~~-~Knpkvr~~~l~~L~~~l~~fg~--~~l~l~k~~lp~l~~~L 168 (1400)
+=.-+..++..+||+- += ...+.++..+.-. ..++.+.+.++..|-..+..... ..+. .+--++.+...|
T Consensus 33 ~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl~S~~ly~~V~-~evt~~~Li~hL 111 (160)
T PF11841_consen 33 ILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVLNSPKLYQLVE-QEVTLESLIRHL 111 (160)
T ss_pred HHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHhCCHHHHHHHh-ccCCHHHHHHHH
Confidence 3345666777777741 11 2334444443322 23678888888888777653221 1111 134678889999
Q ss_pred CCCChhHHHHHHHHHHHHHhhhChh
Q 000599 169 NDPNPGVREAAILCIEEMYTYAGPQ 193 (1400)
Q Consensus 169 ~d~n~~VR~aA~~~l~~l~~~~G~~ 193 (1400)
+++|+++...|+.++-.|+...++.
T Consensus 112 q~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 112 QVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred HcCCHHHHHHHHHHHHHHHhcCChH
Confidence 9999999999999999999888765
No 251
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=63.94 E-value=1.3e+02 Score=42.76 Aligned_cols=143 Identities=16% Similarity=0.208 Sum_probs=99.4
Q ss_pred HHHhhhccCCc-chHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCC---hhHHHHHHHHHH------HHHHHhc
Q 000599 45 CCLDLLKDNNF-KVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAK---QPVRDAARRLLL------TLMEVSS 114 (1400)
Q Consensus 45 ~l~~~l~DsN~-~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K---~~vre~a~~~L~------~l~e~~~ 114 (1400)
.+.-.-.|++. .|+.-+|.++..++...+.-+.-++...+..++.-|-..+ ..++..-..++. ++..+.+
T Consensus 962 illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlg 1041 (2067)
T KOG1822|consen 962 ILLALATDSTSPVVQTWSLHALALILDSSGPMFRVLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLG 1041 (2067)
T ss_pred HHHHHhhcCCCchhhhhHHHHHHHHHcCCCceehhhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcc
Confidence 33446689998 8888899999999887777777787777776665553322 234444444555 5554433
Q ss_pred hh----H---HHHH-----Hhh--hhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHH
Q 000599 115 PT----I---IVER-----AGS--YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAI 180 (1400)
Q Consensus 115 p~----~---V~e~-----l~~--~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~ 180 (1400)
|+ . .... +.. ..+.|.++-+..+.+.++.. +..|.+..+++ ..+++.++.++..+.--.|++++
T Consensus 1042 peL~~N~~~d~t~~~rts~la~~allls~~d~lnqa~ai~clqq-lhlFapr~~n~-~~lV~~L~~~l~s~~~i~r~~~~ 1119 (2067)
T KOG1822|consen 1042 PELGPNGDKDSTSTLRTSCLAACALLLSHSDPLNQAAAIKCLQQ-LHLFAPRHVNL-DSLVLQLCSLLSSSYLILRRASF 1119 (2067)
T ss_pred cccCCCCcccchhHHHHHHHHHHHHhcCCCccchHHHHHHHHHH-HHhhcchhccH-HHHHHHHHHHhcchhhhhhhhHH
Confidence 32 0 1111 111 13568889999999998854 67899988888 78999999999998888888888
Q ss_pred HHHHHHHhh
Q 000599 181 LCIEEMYTY 189 (1400)
Q Consensus 181 ~~l~~l~~~ 189 (1400)
.++-.+-..
T Consensus 1120 ~clrql~~R 1128 (2067)
T KOG1822|consen 1120 SCLRQLVQR 1128 (2067)
T ss_pred hhhhHHhHH
Confidence 888777654
No 252
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=63.90 E-value=13 Score=29.38 Aligned_cols=29 Identities=14% Similarity=0.339 Sum_probs=26.0
Q ss_pred hhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1330 SFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1330 ~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
..+|.|++.+.+.+.+|++.|..|+..++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 35899999999999999999999988765
No 253
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=63.84 E-value=97 Score=33.79 Aligned_cols=104 Identities=17% Similarity=0.160 Sum_probs=69.7
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCC-hHhHHHHHHHHH-hhhccCCcchHHHHHHHHHHHHHHhhhhhHhhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLT-SAEVTSLVDCCL-DLLKDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~-~~~~~~lv~~l~-~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~ 80 (1400)
.++.+...|-=+.|..|...|..++......+. -++...+.+.+. ......|.......+..+..+. .+..|.
T Consensus 11 ~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL-----~~~~y~ 85 (193)
T PF12612_consen 11 GLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL-----DLPEYR 85 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh-----ccHHHH
Confidence 456677778889999999999999944322111 122333333331 1111234555556666555554 345788
Q ss_pred hhhHHHHHHHhCCCChhHHHHHHHHHHHHHH
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLME 111 (1400)
Q Consensus 81 ~~ilp~LleKLgD~K~~vre~a~~~L~~l~e 111 (1400)
..++-+++--.|...+.+...+..+|..++.
T Consensus 86 ~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~ 116 (193)
T PF12612_consen 86 YSLLSGLVVSAGGLTESLVRASSAALLSYLR 116 (193)
T ss_pred HHHHhHHHhcCCCCchhHHHHHHHHHHHHHH
Confidence 8899999999999999999999999999986
No 254
>KOG2753 consensus Uncharacterized conserved protein, contains PCI domain [General function prediction only]
Probab=63.76 E-value=1.4e+02 Score=34.84 Aligned_cols=95 Identities=19% Similarity=0.202 Sum_probs=56.1
Q ss_pred CCChhHHHHHHHHHHHHHHHhch-hHH---HHHHhhhhhhcCChhH--HHHHHHHHHHHHHhccCcchhhhhhhHHHHHH
Q 000599 93 DAKQPVRDAARRLLLTLMEVSSP-TII---VERAGSYAWTHRSWRV--REEFARTVTSAIGLFSATELTLQRAILPPILQ 166 (1400)
Q Consensus 93 D~K~~vre~a~~~L~~l~e~~~p-~~V---~e~l~~~~~~~Knpkv--r~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~ 166 (1400)
|+.-++|...-..+..++..+.. +++ ++.+-. .++.=|+-+ ..+.+.++..++..+....... |-+...+..
T Consensus 117 d~~~~aR~~Vy~~lv~la~~~~~~~~i~~~lk~~~~-~lkew~~~vedqrel~r~v~~al~~~k~~~~s~-kvmt~lLgt 194 (378)
T KOG2753|consen 117 DKPTPARYQVYMSLVTLAASCKLIEYIVPNLKQLDD-WLKEWNISVEDQRELLRAVHKALKDNKSVDESS-KVMTELLGT 194 (378)
T ss_pred CCCchHHHHHHHHHHHHHhhcceeeeecccHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHhcchhhhHH-HHHHHHHHH
Confidence 43334777777777777654321 111 222222 343333333 4567888888888876533333 445555555
Q ss_pred hhCCCChhHHHHHHHHHHHHHhh
Q 000599 167 MLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 167 ~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
.-+|.-..-|+.|+.|+.+.-+-
T Consensus 195 yt~dnas~AredA~rcV~~av~d 217 (378)
T KOG2753|consen 195 YTEDNASEAREDAMRCVVEAVKD 217 (378)
T ss_pred hcccchhHHHHHHHHHHHHHHcC
Confidence 56666688999999999987654
No 255
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=63.63 E-value=76 Score=38.42 Aligned_cols=125 Identities=11% Similarity=0.076 Sum_probs=78.9
Q ss_pred cchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHh---CCCChhHHHHHHHHHHHHHHHh--------------c-hh
Q 000599 55 FKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL---GDAKQPVRDAARRLLLTLMEVS--------------S-PT 116 (1400)
Q Consensus 55 ~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKL---gD~K~~vre~a~~~L~~l~e~~--------------~-p~ 116 (1400)
.....+|.+++..+++..++.....+..++..++... ...+..-++.|.-++..++... . .+
T Consensus 225 ~TrR~AA~dfl~~L~~~~~~~v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~ 304 (370)
T PF08506_consen 225 DTRRRAACDFLRSLCKKFEKQVTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVD 304 (370)
T ss_dssp -SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHH
T ss_pred CCcHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHH
Confidence 4566788999999987766655555666666666643 2334445677777777776321 0 11
Q ss_pred HHHHHHhhhhhh---cCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHH
Q 000599 117 IIVERAGSYAWT---HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCI 183 (1400)
Q Consensus 117 ~V~e~l~~~~~~---~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l 183 (1400)
+....+++ -+. .+.|-+|..+|.++...-+.+.... + -.++|.++.+|++++.-|+.-|..++
T Consensus 305 Ff~~~v~p-eL~~~~~~~piLka~aik~~~~Fr~~l~~~~--l-~~~~~~l~~~L~~~~~vv~tyAA~~i 370 (370)
T PF08506_consen 305 FFSQHVLP-ELQPDVNSHPILKADAIKFLYTFRNQLPKEQ--L-LQIFPLLVNHLQSSSYVVHTYAAIAI 370 (370)
T ss_dssp HHHHHTCH-HHH-SS-S-HHHHHHHHHHHHHHGGGS-HHH--H-HHHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred HHHHHhHH-HhcccCCCCcchHHHHHHHHHHHHhhCCHHH--H-HHHHHHHHHHhCCCCcchhhhhhhhC
Confidence 22333333 233 6778899999988876554433221 2 47999999999999999999888764
No 256
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=62.51 E-value=38 Score=41.81 Aligned_cols=155 Identities=9% Similarity=0.133 Sum_probs=101.4
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHhhccccccc
Q 000599 1171 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDVMED 1249 (1400)
Q Consensus 1171 ~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-l~d~~~~vR~~aL~~L~~l~~~~~~~~~~ 1249 (1400)
+++.+|..+.+ +--|..++..++..-..-+ +. .+.+.|+.. ..|.|-.||.+|.+.|.-+| |++
T Consensus 519 d~I~ell~d~d--s~lRy~G~fs~alAy~GTg------n~-~vv~~lLh~avsD~nDDVrRAAViAlGfvc------~~D 583 (926)
T COG5116 519 DYINELLYDKD--SILRYNGVFSLALAYVGTG------NL-GVVSTLLHYAVSDGNDDVRRAAVIALGFVC------CDD 583 (926)
T ss_pred HHHHHHhcCch--HHhhhccHHHHHHHHhcCC------cc-hhHhhhheeecccCchHHHHHHHHheeeeE------ecC
Confidence 34555544443 4677777777665433222 11 233355554 78888889998988776655 344
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHH-HHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhh
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEH-CLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1328 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k~V~~aA~~-al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l 1328 (1400)
+- +++..++.+-+++..-+|++.+ ++...|....-..|+.+|.+++.....-+|..|+--+.-+.-++. ++|.+..
T Consensus 584 ~~--~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n-~~Lnp~v 660 (926)
T COG5116 584 RD--LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDKVATDILEALMYDTNDFVRQSAMIAVGMILMQCN-PELNPNV 660 (926)
T ss_pred cc--hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcC-cccChhH
Confidence 43 6778888888887777776666 556556667777899999999876666667777766666665555 6677777
Q ss_pred hhhHHHHHHHhcCCC
Q 000599 1329 PSFLPALFEAFGNQS 1343 (1400)
Q Consensus 1329 ~~liP~l~~~~~d~~ 1343 (1400)
..|+..+.+-+.|.+
T Consensus 661 ~~I~k~f~~vI~~Kh 675 (926)
T COG5116 661 KRIIKKFNRVIVDKH 675 (926)
T ss_pred HHHHHHHHHHHhhhh
Confidence 777776666665443
No 257
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=62.29 E-value=97 Score=33.99 Aligned_cols=77 Identities=16% Similarity=0.029 Sum_probs=55.4
Q ss_pred HHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHH
Q 000599 117 IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRD 196 (1400)
Q Consensus 117 ~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~ 196 (1400)
...+.+.. ..++.|+-+|...+..+...+.. -++ ..++..+..++.|++.-||.+.-.+|.++++...+.+.+
T Consensus 120 ~~~~~~~~-W~~s~~~w~rR~~~v~~~~~~~~-----~~~-~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~~~v~~ 192 (213)
T PF08713_consen 120 EALELLEK-WAKSDNEWVRRAAIVMLLRYIRK-----EDF-DELLEIIEALLKDEEYYVQKAIGWALREIGKKDPDEVLE 192 (213)
T ss_dssp GHHHHHHH-HHHCSSHHHHHHHHHCTTTHGGG-----CHH-HHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-HHHHHH
T ss_pred HHHHHHHH-HHhCCcHHHHHHHHHHHHHHHHh-----cCH-HHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCHHHHHH
Confidence 44455554 78888877666555444332222 233 578888889999999999999999999999998888999
Q ss_pred hhhc
Q 000599 197 ELHR 200 (1400)
Q Consensus 197 ~L~~ 200 (1400)
+|..
T Consensus 193 ~l~~ 196 (213)
T PF08713_consen 193 FLQK 196 (213)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 9874
No 258
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=62.00 E-value=2.2e+02 Score=31.82 Aligned_cols=164 Identities=17% Similarity=0.177 Sum_probs=87.8
Q ss_pred chHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhhC---------CchhhhHHHHHHHHHHHhc--------cC-Cc
Q 000599 830 HHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI---------DPKELVRQPCSTTLDIVSK--------TY-SV 891 (1400)
Q Consensus 830 n~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klg---------D~k~~vr~~~~~~L~~~~~--------~~-~~ 891 (1400)
|.+++..+|++|..++....-.+.+|.-..+-.++..+. +.-+.+-..+-++|..+.. .+ ..
T Consensus 1 ~~~~~~~~l~~l~~ll~~~~~~~sq~~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll 80 (223)
T PF10441_consen 1 NGKSILLILEILKQLLSSKPWLFSQYNIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLL 80 (223)
T ss_pred CchHHHHHHHHHHHHHhcCchhccchhHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHH
Confidence 456788888888888888777776666555555554432 3344555566666665543 22 33
Q ss_pred hhhHHHHHHhhc------cCCCchhHH---HHHHHHHHHHhhhhcCCCCCC-----------CcchHHHHHHhhcc----
Q 000599 892 DSLLPALLRSLD------EQRSPKAKL---AVIEFAISSLNKHAMNSEGSG-----------NLGILKLWLAKLTP---- 947 (1400)
Q Consensus 892 ~~~l~~l~r~l~------~~~~~k~k~---~~L~~l~~~l~~~~~~~~~~~-----------~~~~~~~~l~~i~~---- 947 (1400)
-..+..+++.+. +.+....-. ++..| ..+|+.+ .++.... .....+..+.+-++
T Consensus 81 ~~~l~~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~-aRlL~~l-~ep~~~~~~~~~~~~l~~~~~~~k~~~~kh~~~lL~ 158 (223)
T PF10441_consen 81 LSVLQRLLRCLFSPNSQRSSKQLGLSAEAEEAKAF-ARLLTNL-CEPSSVSRSSKKTSSLTSATSSAKKSLRKHAPYLLA 158 (223)
T ss_pred HHHHHHHHHHHHhcCccccccccccchhhHHHHHH-HHHHHHH-hCcccccccccccccccHHHHHHHHHHHhHHHHHHH
Confidence 344555555555 111111111 22333 2344442 3331000 01222333333333
Q ss_pred ----cc--cCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHH
Q 000599 948 ----LV--HDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 995 (1400)
Q Consensus 948 ----l~--~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l 995 (1400)
.. ..=.++||++=..++.+|+..++..........|+.+-+...+...
T Consensus 159 ~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr~~fk~Ly 212 (223)
T PF10441_consen 159 NYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGRAVFKSLY 212 (223)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHHHHHHHHH
Confidence 22 2266899999999999999888766544444567777766654433
No 259
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=61.75 E-value=2.4e+02 Score=35.36 Aligned_cols=147 Identities=16% Similarity=0.135 Sum_probs=103.5
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHHHh--------hhhhHhhhhhhHHHHHHHhCC------------CChhHHH
Q 000599 41 SLVDCCLDLLKDNNFKVSQGALQSLASAAVLS--------GEHFKLHFNALVPAVVERLGD------------AKQPVRD 100 (1400)
Q Consensus 41 ~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l--------~~~~~~~~~~ilp~LleKLgD------------~K~~vre 100 (1400)
.+++.+.-....+-..|.+..+..+-.+-+.+ .+.|++|...++..+.+++.= .+...|.
T Consensus 291 ~~vellLl~~~h~~~evie~SF~fW~~lse~l~~~~~~~~~~~frpy~~rLvs~l~~h~qlp~~~~~l~Ee~~~f~~fR~ 370 (559)
T KOG2081|consen 291 RIVELLLLVAGHNDTEVIEASFNFWYSLSEELTLTDDDEALGIFRPYFLRLVSLLKRHVQLPPDQFDLPEEESEFFEFRL 370 (559)
T ss_pred hHHHHHHHhccCCchhhhhhhHHhhhhhHHHHhccccHHHHHHhHHHHHHHHHHHHHHccCCCccccCccchhHHHHHHH
Confidence 44444443344555588888888887765432 346899999999999988631 1223677
Q ss_pred HHHHHHHHHHHHhchhHHHHHHhhhhh-hcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCC--CChhHHH
Q 000599 101 AARRLLLTLMEVSSPTIIVERAGSYAW-THRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLND--PNPGVRE 177 (1400)
Q Consensus 101 ~a~~~L~~l~e~~~p~~V~e~l~~~~~-~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d--~n~~VR~ 177 (1400)
++.++|..+.-.++-+..+..+..... ++..|...+..+-.|...+..+.... .+++|.+++++-+ -...+|-
T Consensus 371 ~v~dvl~Dv~~iigs~e~lk~~~~~l~e~~~~We~~EAaLF~l~~~~~~~~~~e----~~i~pevl~~i~nlp~Q~~~~~ 446 (559)
T KOG2081|consen 371 KVGDVLKDVAFIIGSDECLKQMYIRLKENNASWEEVEAALFILRAVAKNVSPEE----NTIMPEVLKLICNLPEQAPLRY 446 (559)
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhccCCccc----cchHHHHHHHHhCCccchhHHH
Confidence 788888888877777777776654222 35669999999998888777766543 4677777776543 3334999
Q ss_pred HHHHHHHHHHhhhC
Q 000599 178 AAILCIEEMYTYAG 191 (1400)
Q Consensus 178 aA~~~l~~l~~~~G 191 (1400)
.++.+++++-.|+.
T Consensus 447 ts~ll~g~~~ew~~ 460 (559)
T KOG2081|consen 447 TSILLLGEYSEWVE 460 (559)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999999875
No 260
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=61.10 E-value=2.5e+02 Score=34.61 Aligned_cols=134 Identities=11% Similarity=0.127 Sum_probs=79.5
Q ss_pred hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHh
Q 000599 1184 PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDAD-SSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVT 1262 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~-~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~ 1262 (1400)
+--...|+.-|..++..+...........++.+|...+...+ ......|+..|+.|++....+..-+-...++.|++.+
T Consensus 115 ~~i~~~a~~iLt~l~~~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L 194 (429)
T cd00256 115 QFIVHMSFSILAKLACFGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLL 194 (429)
T ss_pred hhHHHHHHHHHHHHHhcCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHH
Confidence 455666777788887665432222223345567777776543 4456678899999999877662111111344444444
Q ss_pred cCCcHHHHHHHHHHHHHHHhhcChh--------hHHHhhhhhcc-CCchhhHhHHHHHHHHHHh
Q 000599 1263 KDAVPKVSNEAEHCLTVVLSQYDPF--------RCLSVIVPLLV-TEDEKTLVTCINCLTKLVG 1317 (1400)
Q Consensus 1263 ~D~~k~V~~aA~~al~~i~~~~~p~--------~~l~~l~~~l~-s~~~~~~~~alk~l~~lv~ 1317 (1400)
....-.+.-.=+.++-.|+-.|.+. .+|+.|..+++ +.+.++-..|+-.+..++.
T Consensus 195 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~ 258 (429)
T cd00256 195 SNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS 258 (429)
T ss_pred hhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence 3322234444455555566555553 47888888885 4567767777777777775
No 261
>PF12333 Ipi1_N: Rix1 complex component involved in 60S ribosome maturation; InterPro: IPR024679 This domain is found in IPI1, which is a component of the Rix1 complex involved in pre-rRNA-processing [, ]. It is also found in testis-expressed sequence 10 protein, a nuclear membrane protein, which is a component of the MLL1/MLL complex [].
Probab=60.93 E-value=22 Score=34.53 Aligned_cols=64 Identities=13% Similarity=0.109 Sum_probs=49.8
Q ss_pred CHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhh-cchhhhhhcHHHHHHHHHHHHhhhhc
Q 000599 1320 SQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVTIYANRISQA 1390 (1400)
Q Consensus 1320 ~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~-~~p~l~~L~~s~~kll~~yi~r~~~~ 1390 (1400)
+++.+.++.+.++..+..||.|=.++||.-|...|--+-.+.|++ +..+. -|+|+-|+.=++..
T Consensus 1 ~~~~l~p~~~~l~~~i~sAMTHi~~~Ir~dsl~~L~~lL~~~p~~~~~~~~-------~kil~~f~~ll~~~ 65 (102)
T PF12333_consen 1 QPELLSPFFPLLMLYISSAMTHISPDIREDSLKFLDLLLEHAPDELCSGGW-------VKILPNFLDLLGWS 65 (102)
T ss_pred ChHHHHhHHHHHHHHHHHHHHhCCHHHHHhHHHHHHHHHHHCChHhHhhhH-------HHHHHHHHHHHCCC
Confidence 467899999999999999999999999999999987777777766 33333 45666666555444
No 262
>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.
Probab=60.05 E-value=36 Score=34.04 Aligned_cols=29 Identities=21% Similarity=0.521 Sum_probs=23.4
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
.-..++.+++|+|++||..|..++-.++.
T Consensus 87 ~K~~vM~Lm~h~d~eVr~eAL~avQklm~ 115 (119)
T PF11698_consen 87 AKERVMELMNHEDPEVRYEALLAVQKLMV 115 (119)
T ss_dssp HHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 33557899999999999999999988764
No 263
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=59.96 E-value=48 Score=33.38 Aligned_cols=95 Identities=14% Similarity=0.282 Sum_probs=65.4
Q ss_pred CCChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhc---cCCchHHHHHHHHHHHhhccccCCCchhHHHHHH
Q 000599 784 SSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHL---DDPHHKVAQAALSTLADIIPSCRKPFESYMERIL 860 (1400)
Q Consensus 784 s~~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l---~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll 860 (1400)
+.+|.---.-+..+..+--+. .++..+++.+.++| ..++.++..++|.+|.-|+..-.+.|-+|+..-+
T Consensus 14 ~d~~gp~~~~l~eIa~~t~~~--------~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~ 85 (125)
T PF01417_consen 14 NDPWGPPGKLLAEIAQLTYNS--------KDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI 85 (125)
T ss_dssp SSSSS--HHHHHHHHHHTTSC--------HHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH
T ss_pred CCCCCcCHHHHHHHHHHHhcc--------ccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 556666655555555543331 26789999999999 7788899999999999999998888888886544
Q ss_pred HHHHHh--h-C-C-----chhhhHHHHHHHHHHHh
Q 000599 861 PHVFSR--L-I-D-----PKELVRQPCSTTLDIVS 886 (1400)
Q Consensus 861 ~~L~~k--l-g-D-----~k~~vr~~~~~~L~~~~ 886 (1400)
..+-.- . + | .--.||++|.++++.+.
T Consensus 86 ~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 86 DIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 433222 1 1 2 22348999999998775
No 264
>PF08623 TIP120: TATA-binding protein interacting (TIP20); InterPro: IPR013932 TIP120 (also known as cullin-associated and neddylation-dissociated protein 1) is a TATA binding protein interacting protein that enhances transcription []. ; PDB: 4A0C_A 1U6G_C.
Probab=59.81 E-value=19 Score=38.23 Aligned_cols=83 Identities=12% Similarity=0.199 Sum_probs=66.4
Q ss_pred CchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHH
Q 000599 1300 EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRL 1379 (1400)
Q Consensus 1300 ~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kl 1379 (1400)
+....|-.|+++|-.+++.+. +.+ .+..++..+..|+.| +.++|--+.-.+..+...-++++.+++..|...-.+.
T Consensus 39 DGLelRK~ayE~lytlLd~~~-~~~--~~~~~~~~v~~GL~D-~~DIk~L~~~~l~kl~~~~p~~v~~~Ld~l~~~l~~~ 114 (169)
T PF08623_consen 39 DGLELRKAAYECLYTLLDTCL-SRI--DISEFLDRVEAGLKD-EHDIKMLCHLMLSKLAQLAPEEVLQRLDSLVEPLRKT 114 (169)
T ss_dssp GGGHHHHHHHHHHHHHHHSTC-SSS---HHHHHHHHHHTTSS--HHHHHHHHHHHHHHHHS-HHHHHHCCTTTHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHH-HhC--CHHHHHHHHHhhcCC-cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHH
Confidence 345789999999999997554 333 367889999999999 9999999999999999888899999999999999999
Q ss_pred HHHHHHh
Q 000599 1380 VTIYANR 1386 (1400)
Q Consensus 1380 l~~yi~r 1386 (1400)
|+.-.+-
T Consensus 115 L~~k~k~ 121 (169)
T PF08623_consen 115 LSKKLKE 121 (169)
T ss_dssp HH----T
T ss_pred hhccCCC
Confidence 8865543
No 265
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=59.63 E-value=1.2e+02 Score=35.85 Aligned_cols=165 Identities=15% Similarity=0.221 Sum_probs=92.7
Q ss_pred hhHHHHHHHHHHHHHhcCChh----hHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc-------c-ccccH
Q 000599 1184 PTSKHGALQQLIKASVANDHS----IWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD-------V-MEDSV 1251 (1400)
Q Consensus 1184 ~~~r~~al~~L~~~l~~~~~~----~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~-------~-~~~~~ 1251 (1400)
|+.|. ..-+|.+.+....+. ...+.|+.++..+.-.+++.+..|-+.||.+|.+|++.... . +..|.
T Consensus 134 Pe~r~-~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~~~~~~~~~F~~~y~ 212 (319)
T PF08767_consen 134 PEHRV-NFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSKTNPEFANQFYQQYY 212 (319)
T ss_dssp HHHHH-HHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH-SHHHHHHHHHHHH
T ss_pred hHHHH-HHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 45555 555555554443222 24567999999999999999999999999999999998754 2 45667
Q ss_pred HHHHHHHHHHhcCC-cHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---CCchhhHhHHHHHHHHHHhhcCHHHHHhh
Q 000599 1252 EIVIEKLLHVTKDA-VPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV---TEDEKTLVTCINCLTKLVGRLSQEELMAQ 1327 (1400)
Q Consensus 1252 e~~l~~ll~~~~D~-~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~---s~~~~~~~~alk~l~~lv~~~~~~~l~~~ 1327 (1400)
-.++..++..+-|+ ++..-..-...+..+.....-.. +-.|... +...-..-....+|...+.++.++++...
T Consensus 213 ~~il~~if~vltD~~Hk~gf~~q~~iL~~Lf~~ve~~~---i~~~l~~~~~~n~~~v~~~i~~~L~~~Fp~l~~~qi~~f 289 (319)
T PF08767_consen 213 LDILQDIFSVLTDSDHKSGFKLQSQILSNLFRLVESGS---IQVPLFDPGMSNQEFVSEYIANLLSEAFPNLSPKQIENF 289 (319)
T ss_dssp HHHHHHHHHHHHSTT-GGGHHHHHHHHHHHHHHHHTT----SSSSSSSTTT-HHHHHHHHHHHHHHHH-TTS-HHHHHHH
T ss_pred HHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHHHHccc---ccccccCCCCccHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence 77888888888887 45444444455554443211111 0001111 11111222234455555555666655554
Q ss_pred hhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1328 LPSFLPALFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1328 l~~liP~l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
+-++.+..+| ..+-|..-+.-++.+
T Consensus 290 ----v~~Lf~~~~d-~~~Fk~~lrDFlI~~ 314 (319)
T PF08767_consen 290 ----VQGLFELNND-PEKFKTHLRDFLIQL 314 (319)
T ss_dssp ----HHHHHHTTT--HHHHHHHHHHHHHHH
T ss_pred ----HHHHHHhcCC-HHHHHHHHHHHhhhh
Confidence 4555665553 445555555554443
No 266
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=58.92 E-value=3.7e+02 Score=31.86 Aligned_cols=135 Identities=17% Similarity=0.243 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHHhcCC-hh-hHHHHHHHHHHHHHHHhcCCChHHHH-HHHHHHHHHHhhccccccccHHHHHHHHH----
Q 000599 1187 KHGALQQLIKASVAND-HS-IWTKYFNQILTAVLEVLDDADSSVRE-VALSLINEMLKNQKDVMEDSVEIVIEKLL---- 1259 (1400)
Q Consensus 1187 r~~al~~L~~~l~~~~-~~-~~~~~f~~ll~~Ll~~l~d~~~~vR~-~aL~~L~~l~~~~~~~~~~~~e~~l~~ll---- 1259 (1400)
+++-|+-+..++.... .. .+......++..++.-..+..+..|+ .+|.++..|++.++..+.+++..++..++
T Consensus 44 KkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~Tl 123 (319)
T PF08767_consen 44 KKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECTL 123 (319)
T ss_dssp HHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence 3444544555554332 22 23333444555555444445666665 46999999999998877776555555544
Q ss_pred HHhcC---CcHHHHHHHHHHHHHHHhh-------cChhh---HHHhhhhhccCCchhhHhHHHHHHHHHHhhcCH
Q 000599 1260 HVTKD---AVPKVSNEAEHCLTVVLSQ-------YDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQ 1321 (1400)
Q Consensus 1260 ~~~~D---~~k~V~~aA~~al~~i~~~-------~~p~~---~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~ 1321 (1400)
+.+.+ ..++.+..-=.-+++++.+ +||+. ++..+.-++++..-.+-..|++.+..+++.+..
T Consensus 124 ~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~~~~ 198 (319)
T PF08767_consen 124 PMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNNVSK 198 (319)
T ss_dssp HHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHh
Confidence 45543 3577777666666666655 34544 444454555566666778889988888887776
No 267
>KOG1851 consensus Uncharacterized conserved protein [Function unknown]
Probab=58.84 E-value=1.8e+02 Score=40.72 Aligned_cols=72 Identities=22% Similarity=0.359 Sum_probs=54.6
Q ss_pred HHHHHHhhhhhhcCChhHHHHHHHHHHHHH--HhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhh
Q 000599 117 IIVERAGSYAWTHRSWRVREEFARTVTSAI--GLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTY 189 (1400)
Q Consensus 117 ~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l--~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~ 189 (1400)
.++..+....+.+-+|++|..++.++...+ +.|+.....- +.+-..+..+++|.+.+||+.|..+|.-+.+.
T Consensus 1526 e~l~~l~~~~~~~~tw~vr~avl~fl~~~vy~n~Fv~~~~~r-~dI~~l~~s~l~D~~i~vre~Aa~~Lsgl~~~ 1599 (1710)
T KOG1851|consen 1526 EFLRDLKMLTADSSTWRVRSAVLKFLQTVVYSNIFVSQELRR-DDIRKLLESLLNDDQIEVREEAAKCLSGLLQG 1599 (1710)
T ss_pred HHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHhhcccchhH-HHHHHHHHHHHcchHHHHHHHHHHHHHHHHhc
Confidence 344444433466788999999999987754 5677555555 56777788999999999999999999988653
No 268
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=58.32 E-value=2.5e+02 Score=32.72 Aligned_cols=167 Identities=16% Similarity=0.208 Sum_probs=98.8
Q ss_pred CHHHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHH-----HHHHHHHhhhccCCcchHHHHHHHHHHHHH---Hh
Q 000599 1 MEEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVT-----SLVDCCLDLLKDNNFKVSQGALQSLASAAV---LS 72 (1400)
Q Consensus 1 ~e~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~-----~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~---~l 72 (1400)
|.++-.+|.+.+--.+.-+...+.-+++..+- .+..++. .+.+.+...+..+|-.|+.+|++.|..++. .+
T Consensus 84 mpdLQrGLiaddasVKiLackqigcilEdcDt-naVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaal 162 (524)
T KOG4413|consen 84 MPDLQRGLIADDASVKILACKQIGCILEDCDT-NAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAAL 162 (524)
T ss_pred hHHHHhcccCCcchhhhhhHhhhhHHHhcCch-hhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHH
Confidence 45666778888888888888888888876431 1112221 344455567788999999999999988762 12
Q ss_pred hhhhHhhhh--hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch--------hHHHHHHhhhhhhcCChhHHHHHHHHH
Q 000599 73 GEHFKLHFN--ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP--------TIIVERAGSYAWTHRSWRVREEFARTV 142 (1400)
Q Consensus 73 ~~~~~~~~~--~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p--------~~V~e~l~~~~~~~Knpkvr~~~l~~L 142 (1400)
.-.|.+... .-+-.|..|+.| -+|-...+.+..+... +| .-+++.+.....+-+.-.|+..|+...
T Consensus 163 eaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi-SpesaneckkSGLldlLeaElkGteDtLVianciElv 238 (524)
T KOG4413|consen 163 EAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI-SPESANECKKSGLLDLLEAELKGTEDTLVIANCIELV 238 (524)
T ss_pred HHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc-CHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHH
Confidence 222222111 111123334433 3455566666666532 23 234454544334458889999999998
Q ss_pred HHHHHh-ccCcchhhhhhhHHHHHHhhC--CCCh
Q 000599 143 TSAIGL-FSATELTLQRAILPPILQMLN--DPNP 173 (1400)
Q Consensus 143 ~~~l~~-fg~~~l~l~k~~lp~l~~~L~--d~n~ 173 (1400)
++.... +|...+. |..+|..++..+. |++|
T Consensus 239 teLaeteHgrefla-QeglIdlicnIIsGadsdP 271 (524)
T KOG4413|consen 239 TELAETEHGREFLA-QEGLIDLICNIISGADSDP 271 (524)
T ss_pred HHHHHHhhhhhhcc-hhhHHHHHHHHhhCCCCCc
Confidence 886653 5555444 3567777777664 4444
No 269
>PF08389 Xpo1: Exportin 1-like protein; InterPro: IPR013598 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found close to the N terminus of yeast exportin 1 (Xpo1, Crm1, P14068 from SWISSPROT), as well as adjacent to the N-terminal domain of importin-beta (IPR001494 from INTERPRO). Exportin 1 is a nuclear export receptor that translocates proteins out of the nucleus; it interacts with leucine-rich nuclear export signal (NES) sequences in proteins to be transported, as well as with RanGTP [, ]. Importin-beta is a nuclear import receptor that translocates proteins into the nucleus; it interacts with RanGTP and importin-alpha, the latter binding with the nuclear localisation signal (NLS) sequences in proteins to be transported []. More information about these proteins can be found at Protein of the Month: Importins [].; PDB: 3IBV_A 3ICQ_U 3M1I_C 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D 2XWU_B 2X19_B ....
Probab=57.63 E-value=51 Score=33.59 Aligned_cols=50 Identities=24% Similarity=0.331 Sum_probs=35.0
Q ss_pred ChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHH
Q 000599 131 SWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCI 183 (1400)
Q Consensus 131 npkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l 183 (1400)
+..+...++.++...+.-.....+.- ..+++.+..+| ++++.|++|.+||
T Consensus 99 ~~~~~~~~L~~l~s~i~~~~~~~i~~-~~~l~~~~~~l--~~~~~~~~A~~cl 148 (148)
T PF08389_consen 99 NEELVKAALKCLKSWISWIPIELIIN-SNLLNLIFQLL--QSPELREAAAECL 148 (148)
T ss_dssp HHHHHHHHHHHHHHHTTTS-HHHHHS-SSHHHHHHHHT--TSCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHhcc-HHHHHHHHHHc--CCHHHHHHHHHhC
Confidence 37777888888877776433333322 46899999999 5555699999986
No 270
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=57.43 E-value=2.6e+02 Score=36.61 Aligned_cols=126 Identities=11% Similarity=0.228 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHHhhcccc
Q 000599 1170 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDH--SIWTKYFNQILTAVLEVLDD-ADSSVREVALSLINEMLKNQKDV 1246 (1400)
Q Consensus 1170 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~--~~~~~~f~~ll~~Ll~~l~d-~~~~vR~~aL~~L~~l~~~~~~~ 1246 (1400)
..+++.+.+.+| -..|.++...+.-.+..-++ +.+..++..+...|+..+.. .....|...|.+|..++.+.+..
T Consensus 529 ~a~lnLL~d~~D--~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL~~ls~lI~r~~e~ 606 (978)
T KOG1993|consen 529 CAFLNLLQDQND--LVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVLNLLSTLIERVSEH 606 (978)
T ss_pred HHHHHhcCcccc--ceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHh
Confidence 345555555554 36888888888877776554 34555566666666666665 33447788899999999988888
Q ss_pred ccccHHH---HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh--hhHHHhhhhhcc
Q 000599 1247 MEDSVEI---VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--FRCLSVIVPLLV 1298 (1400)
Q Consensus 1247 ~~~~~e~---~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p--~~~l~~l~~~l~ 1298 (1400)
+.||+-. ++|.+-+... .+.-.+-+--.+++.++..+.. .-+-+++.|+++
T Consensus 607 I~P~~~~ivq~lp~LWe~s~-~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIe 662 (978)
T KOG1993|consen 607 IAPYASTIVQYLPLLWEESE-EEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIE 662 (978)
T ss_pred hhHHHHHHHHHHHHHHhhhc-cCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHH
Confidence 8787543 4455544433 2223344555677888877554 457777777775
No 271
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=56.97 E-value=1.8e+02 Score=37.11 Aligned_cols=141 Identities=15% Similarity=0.080 Sum_probs=92.9
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhh---ccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhh-
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASR---KSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLH- 79 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~---~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~- 79 (1400)
.......+|-..+.+|+..+...-..-. ...+. ....+-+.+.+.|....|.-.++.+|..++-..+..=..+
T Consensus 382 l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~---~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl 458 (678)
T KOG1293|consen 382 LMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGLKR---NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFL 458 (678)
T ss_pred HccccccccHHHHHHHHHHHHHHHHHHHHHHcCCcc---chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHH
Confidence 3444556777888888887766543321 11111 1233444566688888999999999999986554322222
Q ss_pred hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch-------hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHH
Q 000599 80 FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP-------TIIVERAGSYAWTHRSWRVREEFARTVTSAIG 147 (1400)
Q Consensus 80 ~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p-------~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~ 147 (1400)
....+..|.+-+.+.-..+|..+.-+|..++=.+.- ..+....+....+++.|-|.++|++.|.....
T Consensus 459 ~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c 533 (678)
T KOG1293|consen 459 RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTC 533 (678)
T ss_pred HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhc
Confidence 335677778778888888999999999988733222 12333333345779999999999999876554
No 272
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=56.47 E-value=74 Score=31.63 Aligned_cols=94 Identities=19% Similarity=0.310 Sum_probs=57.0
Q ss_pred HHHHHhc-CC-ChHHHHHHHHHHHHHHhhccc---cccccHHHHHHHHHHHhc----CCcHHHHHHHHHHHHHHHhhcCh
Q 000599 1216 AVLEVLD-DA-DSSVREVALSLINEMLKNQKD---VMEDSVEIVIEKLLHVTK----DAVPKVSNEAEHCLTVVLSQYDP 1286 (1400)
Q Consensus 1216 ~Ll~~l~-d~-~~~vR~~aL~~L~~l~~~~~~---~~~~~~e~~l~~ll~~~~----D~~k~V~~aA~~al~~i~~~~~p 1286 (1400)
-+++.|. +. +....+.||..+..|.+..+. .+..|++-++-.|+.... +...+.+..|..++- ...|
T Consensus 7 Dll~~L~~~~~~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~----v~~P 82 (114)
T PF10193_consen 7 DLLEYLRSDDEDYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALV----VAAP 82 (114)
T ss_dssp HHHHHHT------S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHH----HHSG
T ss_pred HHHHHHhcCcCCHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHH----HHhh
Confidence 3444444 32 455678899999999999877 899999988888887665 345566666655544 2578
Q ss_pred hhHHHhhhhhccCCch--hhHhHHHHHHH
Q 000599 1287 FRCLSVIVPLLVTEDE--KTLVTCINCLT 1313 (1400)
Q Consensus 1287 ~~~l~~l~~~l~s~~~--~~~~~alk~l~ 1313 (1400)
..+.++|+..+=+.++ ..|+.-|..|+
T Consensus 83 ~~~~~~L~~~f~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 83 EKVAPYLTEEFFSGDYSLQQRMSILSALS 111 (114)
T ss_dssp GGHHH-HHHHHTTS---THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 9999988887765544 55655555443
No 273
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=54.93 E-value=1.2e+02 Score=36.29 Aligned_cols=99 Identities=12% Similarity=0.276 Sum_probs=76.2
Q ss_pred hHHHHHHHHHHHHHhcCC---hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc--ccccHH--HHHHH
Q 000599 1185 TSKHGALQQLIKASVAND---HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV--MEDSVE--IVIEK 1257 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~---~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~--~~~~~e--~~l~~ 1257 (1400)
+...+|..-+..++-.+. ...+..||+......-..|...|=++|..+|.+|.+|+-...+. |..|+. .-|-.
T Consensus 179 diasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl 258 (335)
T PF08569_consen 179 DIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKL 258 (335)
T ss_dssp HHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHH
T ss_pred HhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHH
Confidence 777888888888776553 34567789988888888888889999999999999999865542 456632 46677
Q ss_pred HHHHhcCCcHHHHHHHHHHHHHHHhh
Q 000599 1258 LLHVTKDAVPKVSNEAEHCLTVVLSQ 1283 (1400)
Q Consensus 1258 ll~~~~D~~k~V~~aA~~al~~i~~~ 1283 (1400)
++++++|+.|.|+-.|=-..+.++..
T Consensus 259 ~M~lL~d~sk~Iq~eAFhvFKvFVAN 284 (335)
T PF08569_consen 259 MMNLLRDKSKNIQFEAFHVFKVFVAN 284 (335)
T ss_dssp HHHHTT-S-HHHHHHHHHHHHHHHH-
T ss_pred HHHHhcCcchhhhHHHHHHHHHHHhC
Confidence 78999999999999999999988865
No 274
>COG5656 SXM1 Importin, protein involved in nuclear import [Posttranslational modification, protein turnover, chaperones]
Probab=54.68 E-value=2.9e+02 Score=35.88 Aligned_cols=166 Identities=13% Similarity=0.232 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHh-------cC-CChHHHHHHHHHHHHHHh--hccccccccHH-HHHHHHHHHhcCCcHHHHHHHHH
Q 000599 1207 TKYFNQILTAVLEVL-------DD-ADSSVREVALSLINEMLK--NQKDVMEDSVE-IVIEKLLHVTKDAVPKVSNEAEH 1275 (1400)
Q Consensus 1207 ~~~f~~ll~~Ll~~l-------~d-~~~~vR~~aL~~L~~l~~--~~~~~~~~~~e-~~l~~ll~~~~D~~k~V~~aA~~ 1275 (1400)
.+.|..+|.-+..+| .| .|.--.|.||++++.|.. .....+.+-.+ -+++.|+-.++++---.+..|.+
T Consensus 403 e~TfqgiLsf~~sil~qsaa~psn~dnarq~egalr~lasi~s~itk~sp~an~me~fiv~hv~P~f~s~ygfL~Srace 482 (970)
T COG5656 403 EETFQGILSFLLSILGQSAATPSNIDNARQAEGALRLLASIKSFITKMSPAANVMEYFIVNHVIPAFRSNYGFLKSRACE 482 (970)
T ss_pred hhhhhhHHHHHHHHHhcccCCCCccccHHHHhhHHHHHHHHHHHhccCchHHHHHHHHHHHHhhHhhcCcccchHHHHHH
Q ss_pred HHHHHHhhcChhh----HHHhhhhhccCCchhhHhH-HHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHH
Q 000599 1276 CLTVVLSQYDPFR----CLSVIVPLLVTEDEKTLVT-CINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTV 1350 (1400)
Q Consensus 1276 al~~i~~~~~p~~----~l~~l~~~l~s~~~~~~~~-alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaA 1350 (1400)
.+..+-.-++-.- +......++++..-|+.+. |+.+...++..-..+.+..|+|.+|.-|...-++=+.++=...
T Consensus 483 ~is~~eeDfkd~~ill~aye~t~ncl~nn~lpv~ieAalAlq~fi~~~q~h~k~sahVp~tmekLLsLSn~feiD~LS~v 562 (970)
T COG5656 483 FISTIEEDFKDNGILLEAYENTHNCLKNNHLPVMIEAALALQFFIFNEQSHEKFSAHVPETMEKLLSLSNTFEIDPLSMV 562 (970)
T ss_pred HHHHHHHhcccchHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHhchhhhHHHHhhhhHHHHHHHHhcccccchHHHHH
Q ss_pred HHHHHHHHHHhhhhcchhhhhhcHH
Q 000599 1351 VFCLVDIYIMLGKAFLPYLERLNST 1375 (1400)
Q Consensus 1351 v~~lv~~~~~lge~~~p~l~~L~~s 1375 (1400)
...+|.-+ .+++-||=+.|..+
T Consensus 563 Me~fVe~f---seELspfa~eLa~~ 584 (970)
T COG5656 563 MESFVEYF---SEELSPFAPELAGS 584 (970)
T ss_pred HHHHHHHh---HHhhchhHHHHHHH
No 275
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=54.20 E-value=1.6e+02 Score=43.59 Aligned_cols=203 Identities=16% Similarity=0.198 Sum_probs=124.0
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCCh-----hhHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHhh
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDH-----SIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKN 1242 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~-----~~~~~~f~~ll~~Ll~~-l~d~~~~vR~~aL~~L~~l~~~ 1242 (1400)
+.+++...-.+.+ .+-|..+..-+..++.-... ..-.+.|+.++..++-+ +.|.++.+|+..+..+-
T Consensus 482 ~~~~~~~~~~~~~--~e~r~~~~l~~~~ll~~~~~~~~~~~~~~~~v~~vl~~ll~~aia~~~~~i~~~v~~~l~----- 554 (2341)
T KOG0891|consen 482 VQQCVDSYLEADD--SEIRKNAALTCCELLKYDIICSQTSPHALQVVKEVLSALLTVAIADTDPDIRIRVLSSLN----- 554 (2341)
T ss_pred HHHHHHHHHhccc--HHHHHHHHHHHHHHHhhhhhhhcccchHHHHHHHHHHHHHHHhccCCCcchhhhHHhhhc-----
Confidence 5565655555443 47777776555555432211 11125688888887764 45677778886655544
Q ss_pred ccccccccH-HHHHHH-HHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhh--------hhccCCchhhHhHHHHHH
Q 000599 1243 QKDVMEDSV-EIVIEK-LLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIV--------PLLVTEDEKTLVTCINCL 1312 (1400)
Q Consensus 1243 ~~~~~~~~~-e~~l~~-ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~--------~~l~s~~~~~~~~alk~l 1312 (1400)
.+|.+.+ -..+.. ++-+..|..-.++.+++..+..++. ++|..+++-+. +..-+.--.++..|-+++
T Consensus 555 --~~~~~~laQ~~~lr~~~~al~~~~l~~~~~~~~~ig~l~~-~~~a~vl~~lr~~~l~~~s~l~~sg~~r~~~~~a~~~ 631 (2341)
T KOG0891|consen 555 --ERFDAQLAQPDLLRLLFIALHDENFAIQELATVIIGRLSS-YNPAYVLPSLRKTLLELLTELEFSGMARTKEESAKLL 631 (2341)
T ss_pred --cchhhhhcCchhHHHHHHHhhhhhhhhHHhHHhhcccccc-ccHHHHhHHHHHHHHHHhchhhhcchHHhHHHHHHHh
Confidence 2333321 112222 4445556656666666666655443 34433333332 222244445666666766
Q ss_pred HHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHH
Q 000599 1313 TKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTI 1382 (1400)
Q Consensus 1313 ~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~~ 1382 (1400)
..++... +.-+......++-.+..-..+.++.|-+++++|...+|.+.|++++.++..+.+.-.+.|+.
T Consensus 632 ~~~i~~~-~~~i~~~v~~~l~~~~~~~~~~~s~~~~~~~~~~~eL~~v~g~~~~~~~~~~~~~~~~~l~~ 700 (2341)
T KOG0891|consen 632 CELIISS-PVLISPYVGPILLVLLPKLQDPSSGVEKAVLETIGELCAVGGEEMVKWVDELFSLIIKMLQD 700 (2341)
T ss_pred hHHHHHH-HHHHHhhcCchHHHHHHHHhccchhhHHHHHHHHHHHHHhccchhhhccchHHHHHHHHHHH
Confidence 6666332 34455566666677788888999999999999999999999999988888888877777763
No 276
>KOG2022 consensus Nuclear transport receptor LGL2 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=54.05 E-value=2.4e+02 Score=37.34 Aligned_cols=111 Identities=14% Similarity=0.120 Sum_probs=74.4
Q ss_pred HHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHH
Q 000599 299 WSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDFEACAEMFIPVLFKL 378 (1400)
Q Consensus 299 W~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~ 378 (1400)
|..-...+-.++.+...-...+...++.+-++...+ .+.-.|.++++.+..+|+.++.-++.. -.+....+|.|++-
T Consensus 481 ~~~tEaci~~~~sva~~~~~t~~~~i~rl~~~~asi--k~S~~n~ql~~Tss~~igs~s~~l~e~-P~~ln~sl~~L~~~ 557 (982)
T KOG2022|consen 481 LNRTEACIFQFQSVAEYLGETESTWIPRLFETSASI--KLSAPNPQLLSTSSDLIGSLSNWLGEH-PMYLNPSLPLLFQG 557 (982)
T ss_pred HHHHHHHHHHHHHHHhhcCcchhHHHHHHHHhcccc--ccccCChhHHHHHHHHHHHHHHHHhcC-CcccCchHHHHHHH
Confidence 886666677788877654433333322222222222 233459999999999999999998852 12677789999999
Q ss_pred hchhhHHHHHHHHHHHHHHHHhCC--CcchHHHHHHHh
Q 000599 379 VVITVLVIAESSDNCIKTMLRNCK--AVRVLPRIADCA 414 (1400)
Q Consensus 379 ~~~~kkvi~~sa~~al~~i~~~~~--~~rll~~i~~~l 414 (1400)
+.+++ ....+...|..+.+.|. ++-.+..+...+
T Consensus 558 Lh~sk--~s~q~i~tl~tlC~~C~~~L~py~d~~~a~~ 593 (982)
T KOG2022|consen 558 LHNSK--ESEQAISTLKTLCETCPESLDPYADQFSAVC 593 (982)
T ss_pred hcCch--HHHHHHHHHHHHHHhhhhhCchHHHHHHHHH
Confidence 98887 66677777999999885 344455555444
No 277
>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal
Probab=53.63 E-value=2.4e+02 Score=32.44 Aligned_cols=137 Identities=18% Similarity=0.264 Sum_probs=86.9
Q ss_pred HHHHHHHhhcCCCCC-hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHHhhcccc
Q 000599 1169 IPQILHLMCNGNDGS-PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-LDDADSSVREVALSLINEMLKNQKDV 1246 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~-~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-l~d~~~~vR~~aL~~L~~l~~~~~~~ 1246 (1400)
++-+++.+.+.+-.+ .++..+.+..|.......+.. ++..++...... .++.+ ..+..+++.....
T Consensus 113 LP~ll~~~d~~~~i~~~~~~~~~A~~La~~a~~~~~~----~La~il~~ya~~~fr~~~--------dfl~~v~~~l~~~ 180 (262)
T PF14225_consen 113 LPRLLHAFDDPNPIQPDQECIEIAEALAQVAEAQGLP----NLARILSSYAKGRFRDKD--------DFLSQVVSYLREA 180 (262)
T ss_pred HHHHHHHhcccccccccHHHHHHHHHHHHHHHhCCCc----cHHHHHHHHHhcCCCCHH--------HHHHHHHHHHHHH
Confidence 355666665554000 146667777888777654444 355555554432 22221 2333333333334
Q ss_pred c-cccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-----hHHHhhhhhccCCchhhHhHHHHHHHHHHhhcC
Q 000599 1247 M-EDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS 1320 (1400)
Q Consensus 1247 ~-~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~-----~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~ 1320 (1400)
| -+|--.++.-++....++...++......++.++.+++.. .+|..|...+++.-| ..|++.|+.++...+
T Consensus 181 f~P~~~~~~l~~Ll~lL~n~~~w~~~~~L~iL~~ll~~~d~~~~~~~dlispllrlL~t~~~---~eAL~VLd~~v~~s~ 257 (262)
T PF14225_consen 181 FFPDHEFQILTFLLGLLENGPPWLRRKTLQILKVLLPHVDMRSPHGADLISPLLRLLQTDLW---MEALEVLDEIVTRSG 257 (262)
T ss_pred hCchhHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhccccCCCCcchHHHHHHHHHhCCccH---HHHHHHHHHHHhhcc
Confidence 4 3555566666888888888999999999999999887663 477777777788888 677888888886544
No 278
>PF12422 Condensin2nSMC: Condensin II non structural maintenance of chromosomes subunit; InterPro: IPR024741 Subunit G2 is a non-SMC subunit of condensin II, which is involved in maintenance of the structural integrity of chromosomes. Condensin II is made up of SMC (structural maintenance of chromosomes) and non-SMC subunits. The non-SMC subunits bind to the catalytic ends of the SMC subunit dimer. The condensin holocomplex is able to introduce superhelical tension into DNA in an ATP hydrolysis- dependent manner, resulting in the formation of positive supercoils in the presence of topoisomerase I and of positive knots in the presence of topoisomerase II [].; GO: 0005634 nucleus
Probab=52.63 E-value=3e+02 Score=28.86 Aligned_cols=31 Identities=23% Similarity=0.302 Sum_probs=27.6
Q ss_pred hhhHHHHHHhhCCCChhHHHHHHHHHHHHHh
Q 000599 158 RAILPPILQMLNDPNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 158 k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~ 188 (1400)
+.+=|.|.+.|.-+|..||..|..++...|-
T Consensus 118 rl~~PiL~r~L~~~n~~Vr~na~~l~~~aFp 148 (152)
T PF12422_consen 118 RLYEPILWRALQAANAKVRSNAAALFLDAFP 148 (152)
T ss_pred HHHHHHHHHHHcCCCcchhccHHHHHHHHcC
Confidence 6677888999999999999999999998874
No 279
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=52.15 E-value=27 Score=34.76 Aligned_cols=76 Identities=13% Similarity=0.337 Sum_probs=42.8
Q ss_pred HHHHHHHhhccC--CchHHHHHHHHHHHhhccccCCC----chhHHHHHHHHHHHhhC-CchhhhHHHHHHHHHHHhc--
Q 000599 817 KVMKLFFQHLDD--PHHKVAQAALSTLADIIPSCRKP----FESYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSK-- 887 (1400)
Q Consensus 817 ~l~~~~~~~l~D--sn~kV~~~~Le~L~~li~~~~~~----l~~~l~~ll~~L~~klg-D~k~~vr~~~~~~L~~~~~-- 887 (1400)
.+++.+...+.. ++.|+. .|=.+.+++...+.. |...+...++.++..+. ...+.+|.++.++|+.|.+
T Consensus 32 ~Iv~~i~~~~~~~~~~~kL~--~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~ 109 (121)
T smart00582 32 EIVELWEKYIKKAPPPRKLP--LLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERG 109 (121)
T ss_pred HHHHHHHHHHHhCCccceeh--hHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCC
Confidence 455555554443 445653 444555555554332 32222223333333332 2236799999999999997
Q ss_pred cCCchhh
Q 000599 888 TYSVDSL 894 (1400)
Q Consensus 888 ~~~~~~~ 894 (1400)
.||++.+
T Consensus 110 iF~~~~i 116 (121)
T smart00582 110 IFPPSVL 116 (121)
T ss_pred CCCHHHH
Confidence 8888765
No 280
>KOG2973 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.88 E-value=1e+02 Score=35.69 Aligned_cols=55 Identities=20% Similarity=0.300 Sum_probs=44.9
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcH
Q 000599 1213 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVP 1267 (1400)
Q Consensus 1213 ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k 1267 (1400)
.+..|.+.+.+.++.||..|...|-.+.......|.+|-+..|.-|.++.+|+..
T Consensus 4 ~l~elv~ll~~~sP~v~~~AV~~l~~lt~~~~~~~~~~~~~~lk~l~qL~~~~~~ 58 (353)
T KOG2973|consen 4 ELVELVELLHSLSPPVRKAAVEHLLGLTGRGLQSLSKYSEALLKDLTQLLKDLDP 58 (353)
T ss_pred HHHHHHHHhccCChHHHHHHHHHHhhccccchhhhccchhhhHHHHHHHccCccc
Confidence 3457888999999999999987777666655556888988899999999999855
No 281
>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle. Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.
Probab=51.83 E-value=91 Score=32.83 Aligned_cols=129 Identities=18% Similarity=0.238 Sum_probs=73.7
Q ss_pred ChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhc-CCcHHHHHHHHHHHH----HHHhhcChhhHHHhhhhhcc-
Q 000599 1225 DSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTK-DAVPKVSNEAEHCLT----VVLSQYDPFRCLSVIVPLLV- 1298 (1400)
Q Consensus 1225 ~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~-D~~k~V~~aA~~al~----~i~~~~~p~~~l~~l~~~l~- 1298 (1400)
...+|-.++.++..++...+..|.+.+..++-.+++... |+.-.+..+...++. .....+.-+.++..+.+.+.
T Consensus 18 ~~~~r~~a~v~l~k~l~~~~~~~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~ 97 (157)
T PF11701_consen 18 PEEVRSHALVILSKLLDAAREEFKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASR 97 (157)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-
T ss_pred CHhHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhc
Confidence 455899999999888866666677766666666653332 321112222222221 11122333568888888887
Q ss_pred -CCchhhHhHHHHHHHHHHhhcCHHHHHh-hhhhhHHHHHHHhcCCCHH--HHHHHHHHHHH
Q 000599 1299 -TEDEKTLVTCINCLTKLVGRLSQEELMA-QLPSFLPALFEAFGNQSAD--VRKTVVFCLVD 1356 (1400)
Q Consensus 1299 -s~~~~~~~~alk~l~~lv~~~~~~~l~~-~l~~liP~l~~~~~d~~se--VRkaAv~~lv~ 1356 (1400)
+++...-..++++| .-.+..+.... .....++-|.+.|.+.+.+ ||-.|..+|++
T Consensus 98 ~~~~~~~~~~~lell---~aAc~d~~~r~~I~~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K 156 (157)
T PF11701_consen 98 KSKDRKVQKAALELL---SAACIDKSCRTFISKNYVSWLKELYKNSKDDSEIRVLAAVGLCK 156 (157)
T ss_dssp CTS-HHHHHHHHHHH---HHHTTSHHHHHCCHHHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHH---HHHHccHHHHHHHHHHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence 55555556666654 44444444433 4456788889999655544 67777666654
No 282
>PF04388 Hamartin: Hamartin protein; InterPro: IPR007483 This family includes the hamartin protein which is thought to function as a tumour suppressor. The hamartin protein interacts with the tuberin protein IPR003913 from INTERPRO. Tuberous sclerosis complex (TSC) is an autosomal dominant disorder and is characterised by the presence of hamartomas in many organs, such as brain, skin, heart, lung, and kidney. It is caused by mutation in either TSC1 or TSC2 tumour suppressor genes. TSC1 encodes a protein, hamartin, containing two coiled-coil regions, which have been shown to mediate binding to tuberin. The TSC2 gene codes for tuberin IPR003913 from INTERPRO. These two proteins function within the same pathway(s) regulating cell cycle, cell growth, adhesion, and vesicular trafficking [].
Probab=51.67 E-value=1.7e+02 Score=38.51 Aligned_cols=109 Identities=15% Similarity=0.166 Sum_probs=79.4
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch--hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhh-hh
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP--TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTL-QR 158 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p--~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l-~k 158 (1400)
.++..||+-...++. ..+.++|.. +-.| ..+++.|-. .|. ++..|..+|..|...+....+....+ +-
T Consensus 39 ~l~~~l~~y~~~t~s---~~~~~il~~---~~~P~~K~~~~~l~~-~~~--~~~~Rl~~L~Ll~~~v~~qp~~l~~i~~t 109 (668)
T PF04388_consen 39 WLVNGLVDYYLSTNS---QRALEILVG---VQEPHDKHLFDKLND-YFV--KPSYRLQALTLLGHFVRSQPPWLYKILQT 109 (668)
T ss_pred HHHHHHHHHHhhcCc---HHHHHHHHh---cCCccHHHHHHHHHH-HHc--CchhHHHHHHHHHHHHhcCCchHHHHhcC
Confidence 457788888766553 244444443 3457 778888776 555 46788889999988888766543322 24
Q ss_pred hhHHHHHHhhC-CCChhHHHHHHHHHHHHHhhhChhHHHhhh
Q 000599 159 AILPPILQMLN-DPNPGVREAAILCIEEMYTYAGPQFRDELH 199 (1400)
Q Consensus 159 ~~lp~l~~~L~-d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~ 199 (1400)
++++.|.+||. |.+..|=..|..+|+.|.=++...+..+|.
T Consensus 110 ~Lf~~LLk~L~~D~~~~~~~~al~~LimlLP~ip~~l~~~L~ 151 (668)
T PF04388_consen 110 PLFKSLLKCLQFDTSITVVSSALLVLIMLLPHIPSSLGPHLP 151 (668)
T ss_pred hhHHHHHHHHhhcccHHHHHHHHHHHHHHhccccchhhHHHH
Confidence 78899988875 999999999999999999888877777765
No 283
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=51.64 E-value=3.5e+02 Score=32.36 Aligned_cols=205 Identities=12% Similarity=0.135 Sum_probs=121.7
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC--Ch-----hhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHh
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVAN--DH-----SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLK 1241 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~--~~-----~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~ 1241 (1400)
+..++.-|..- +.|.|+++..-...+++.. +. +++..|-..++..|+...++.+.. -.|=.+|++.++
T Consensus 78 l~~Li~~L~~L---~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~~~dia--l~~g~mlRec~k 152 (335)
T PF08569_consen 78 LYLLIRNLPKL---DFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYENPDIA--LNCGDMLRECIK 152 (335)
T ss_dssp HHHHHHTGGGS----HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGGSTTTH--HHHHHHHHHHTT
T ss_pred HHHHHHHhhhC---CCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhcCcccc--chHHHHHHHHHh
Confidence 44555555443 3689999888888888664 21 123333377888888888865533 122233333333
Q ss_pred hccccccccH--HHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhc----------ChhhHHHhhhhhccCCchhhHhHHH
Q 000599 1242 NQKDVMEDSV--EIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY----------DPFRCLSVIVPLLVTEDEKTLVTCI 1309 (1400)
Q Consensus 1242 ~~~~~~~~~~--e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~----------~p~~~l~~l~~~l~s~~~~~~~~al 1309 (1400)
... +..++ ...+-++++-+..+.-+|...|-..++-+.+.- +.++.+..+..+|.+++|-++.-++
T Consensus 153 ~e~--l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqsl 230 (335)
T PF08569_consen 153 HES--LAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSL 230 (335)
T ss_dssp SHH--HHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHH
T ss_pred hHH--HHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhH
Confidence 211 00000 012233556677888899998888888777541 2246788888889999999999999
Q ss_pred HHHHHHHh-hcCHHHHHhhh--hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHH
Q 000599 1310 NCLTKLVG-RLSQEELMAQL--PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVT 1381 (1400)
Q Consensus 1310 k~l~~lv~-~~~~~~l~~~l--~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~ 1381 (1400)
|+|+.++. +..-..+.+.+ ++-+-.+.-.+.|...-++=.|.-. -++.-.=++.=.|-..-|..-+-|||.
T Consensus 231 kLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhv-FKvFVANp~K~~~I~~iL~~Nr~kLl~ 304 (335)
T PF08569_consen 231 KLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHV-FKVFVANPNKPPPIVDILIKNREKLLR 304 (335)
T ss_dssp HHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHH-HHHHHH-SS-BHHHHHHHHHTHHHHHH
T ss_pred HHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHH-HHHHHhCCCCChHHHHHHHHHHHHHHH
Confidence 99999874 44444455544 4556667777889998898888443 223333334455556666666666654
No 284
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=51.20 E-value=1e+02 Score=38.97 Aligned_cols=95 Identities=17% Similarity=0.204 Sum_probs=69.4
Q ss_pred hhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch----hHHHHHHhhhhhhcC-ChhHHHHHHHHHHHHHH
Q 000599 73 GEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP----TIIVERAGSYAWTHR-SWRVREEFARTVTSAIG 147 (1400)
Q Consensus 73 ~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p----~~V~e~l~~~~~~~K-npkvr~~~l~~L~~~l~ 147 (1400)
.+.++.....++|.++.||+...+.||.++.++|..+...+.. +-=++.|+....+.. ++-||-=++.+|...++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 3467788888999999999999999999999999998874332 233667776445555 58888877777765555
Q ss_pred hccCcchhhhhhhHHHHHHhhCC
Q 000599 148 LFSATELTLQRAILPPILQMLND 170 (1400)
Q Consensus 148 ~fg~~~l~l~k~~lp~l~~~L~d 170 (1400)
...... +..++|.+++.++.
T Consensus 94 Rl~~~e---~~~llP~ll~~is~ 113 (501)
T PF13001_consen 94 RLDDEE---RRELLPSLLKGISK 113 (501)
T ss_pred cCCHHH---HHHHHHHHHHhhcc
Confidence 443321 15789999988874
No 285
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=50.74 E-value=4.1e+02 Score=29.91 Aligned_cols=126 Identities=14% Similarity=0.152 Sum_probs=72.6
Q ss_pred cCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhcc---
Q 000599 1222 DDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLV--- 1298 (1400)
Q Consensus 1222 ~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~--- 1298 (1400)
+..++......|..|.+++.+ ++ ...-.++-.+......++....--+...+..+..+= +++++.|.+.+.
T Consensus 11 ~~~~~~~~~~~L~~L~~l~~~---~~-~~~~~v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~--~r~f~~L~~~L~~~~ 84 (234)
T PF12530_consen 11 KISDPELQLPLLEALPSLACH---KN-VCVPPVLQTLVSLVEQGSLELRYVALRLLTLLWKAN--DRHFPFLQPLLLLLI 84 (234)
T ss_pred CCCChHHHHHHHHHHHHHhcc---Cc-cchhHHHHHHHHHHcCCchhHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHH
Confidence 345666777777888887773 33 333333333334444444444333333333333221 122222222221
Q ss_pred ----------CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHh-cCCCHHHHHHHHHHHHHHH
Q 000599 1299 ----------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAF-GNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1299 ----------s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~-~d~~seVRkaAv~~lv~~~ 1358 (1400)
+..|....++--.+..+.+..+ + |-+++++.|...+ ++.+..++..|+.+|-.+|
T Consensus 85 ~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p-~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc 150 (234)
T PF12530_consen 85 LRIPSSFSSKDEFWECLISIAASIRDICCSRP-D----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLC 150 (234)
T ss_pred hhcccccCCCcchHHHHHHHHHHHHHHHHhCh-h----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHH
Confidence 2355555554445556665555 2 8889999999999 8999999999999988888
No 286
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=49.64 E-value=1e+02 Score=38.98 Aligned_cols=118 Identities=13% Similarity=0.080 Sum_probs=81.3
Q ss_pred cccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh-hh----HHHhhhhhccCC-chhhHhHHHHHHHHHHh
Q 000599 1244 KDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP-FR----CLSVIVPLLVTE-DEKTLVTCINCLTKLVG 1317 (1400)
Q Consensus 1244 ~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p-~~----~l~~l~~~l~s~-~~~~~~~alk~l~~lv~ 1317 (1400)
..++++.+..+||.+|.+...++..|+....+.+..+-+.+.+ .. +-..|..+-..+ .--++.-++=++.+=++
T Consensus 14 D~kLe~~L~~~L~plLlkl~S~~~~VR~kV~eil~hin~Rik~~~~I~LPv~~Ll~q~~~~~~s~~vrnfsliyi~~g~~ 93 (501)
T PF13001_consen 14 DEKLEQVLDKYLPPLLLKLASPHASVRKKVIEILSHINKRIKSNPSIQLPVEALLKQYKEPSDSSFVRNFSLIYIEMGFD 93 (501)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhccCCcCcCcHHHHHHHHhCCCCchHHHHHHHHHHHHhhh
Confidence 4578999999999999999999999999999999888877666 22 333333333333 45578888999999999
Q ss_pred hcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Q 000599 1318 RLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLG 1362 (1400)
Q Consensus 1318 ~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lg 1362 (1400)
|++.++-...+|.++.++.+...+.. +..-....++..+|..+.
T Consensus 94 Rl~~~e~~~llP~ll~~is~~~~~~~-~~~~~~~~~f~~~~k~~~ 137 (501)
T PF13001_consen 94 RLDDEERRELLPSLLKGISKKPKQHQ-DSFLRLARLFNILLKLLP 137 (501)
T ss_pred cCCHHHHHHHHHHHHHhhccCchhhh-HHHHHHHHHHHHHhhcCC
Confidence 99999888886666666643333322 333333333444555544
No 287
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=49.18 E-value=5.3e+02 Score=30.71 Aligned_cols=97 Identities=11% Similarity=0.140 Sum_probs=56.0
Q ss_pred HhhhccCCcchHHHHHHHHHHHHH-Hh---hhhhHhhhh---hhHHHHHHH-hCCCC---------hhHHHHHHHHHHHH
Q 000599 47 LDLLKDNNFKVSQGALQSLASAAV-LS---GEHFKLHFN---ALVPAVVER-LGDAK---------QPVRDAARRLLLTL 109 (1400)
Q Consensus 47 ~~~l~DsN~~V~~~aL~~l~~l~~-~l---~~~~~~~~~---~ilp~LleK-LgD~K---------~~vre~a~~~L~~l 109 (1400)
-..++.....+...+|..|.+++. .- ...+-.+.. ..+|.++.. -.+.+ +.||....+.++.+
T Consensus 62 yr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsf 141 (330)
T PF11707_consen 62 YRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSF 141 (330)
T ss_pred HHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHHHHHH
Confidence 356777777888899999999987 32 222222222 234444422 11111 27999999999999
Q ss_pred HHHhchhHH---------HHHHhhhhhhcCChhHHHHHHHHHHH
Q 000599 110 MEVSSPTII---------VERAGSYAWTHRSWRVREEFARTVTS 144 (1400)
Q Consensus 110 ~e~~~p~~V---------~e~l~~~~~~~Knpkvr~~~l~~L~~ 144 (1400)
.+...+... +..+.+ ++..-.+-+...++.+|.+
T Consensus 142 l~~~~~~~~~~lL~~~~~~~~l~k-~l~~D~~~~v~~iL~~l~~ 184 (330)
T PF11707_consen 142 LSSGDPELKRDLLSQKKLMSALFK-GLRKDPPETVILILETLKD 184 (330)
T ss_pred HccCCHHHHHHHHHcCchHHHHHh-cccCCCHHHHHHHHHHHHH
Confidence 887655322 233333 3444445566666666654
No 288
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=49.03 E-value=2.3e+02 Score=29.98 Aligned_cols=116 Identities=16% Similarity=0.230 Sum_probs=60.7
Q ss_pred HHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh--hHHHhhhhhccCCch-h--hH
Q 000599 1231 VALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF--RCLSVIVPLLVTEDE-K--TL 1305 (1400)
Q Consensus 1231 ~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~--~~l~~l~~~l~s~~~-~--~~ 1305 (1400)
.+..+|.++++....--.+-++.++..++-....+. .-=.+|+..|+..++.. .+..-|..++..=.+ + +-
T Consensus 37 LG~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~----~~~idlL~~lv~~~p~~vle~~~~l~~~ld~l~~lp~~~a 112 (158)
T PF14676_consen 37 LGIQILLELFKVHEMIRSEILEQLLNRIVTKSSSPS----SQYIDLLSELVRKAPLTVLECSSKLKELLDYLSFLPGDVA 112 (158)
T ss_dssp HHHHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS------HHHHHHHHHHHHH-HHHHS-S-HHHHGGGGGTTTS-HHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccch----hHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 677888888875433223334444444444444421 22358888888775553 345555555432111 1 11
Q ss_pred hHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000599 1306 VTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1355 (1400)
Q Consensus 1306 ~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv 1355 (1400)
..-++.+-=|+ +.. ..+ -..+|-.|.|+|-..+.++|+.||..+.
T Consensus 113 ~~ll~Al~PLi-~~s-~~l---rd~lilvLRKamf~r~~~~R~~Av~Gfl 157 (158)
T PF14676_consen 113 IGLLRALLPLI-KFS-PSL---RDSLILVLRKAMFSRELDARQMAVNGFL 157 (158)
T ss_dssp HHHHHHHHHHH-TT--HHH---HHHHHHHHHHHTT-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH-hcC-HHH---HHHHHHHHHHHHccccHHHHHHHHHHhc
Confidence 11233333333 223 222 2346889999999999999999998754
No 289
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=48.89 E-value=1.4e+02 Score=36.97 Aligned_cols=167 Identities=14% Similarity=0.220 Sum_probs=84.2
Q ss_pred HHHHHHHHHHHHhc-CCChHHHHHHHHHHHHHHhhcccccc--ccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcC
Q 000599 1209 YFNQILTAVLEVLD-DADSSVREVALSLINEMLKNQKDVME--DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYD 1285 (1400)
Q Consensus 1209 ~f~~ll~~Ll~~l~-d~~~~vR~~aL~~L~~l~~~~~~~~~--~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~ 1285 (1400)
.+..++..|+.-.- +..-.| -...++|+.++++-+..+. ++++.+|--.=.++..+..+ ..|-+.+.+|+.+++
T Consensus 156 ~y~~L~~~Ll~p~lWe~~gni-PalvrLL~a~i~k~~~~i~~~~~l~~iLgvFQkLi~sk~~D--~~gF~LL~~iv~~~p 232 (435)
T PF03378_consen 156 AYKQLFPPLLSPALWERRGNI-PALVRLLQAYIKKDPSFIVANNQLEPILGVFQKLIASKAND--HYGFDLLESIVENLP 232 (435)
T ss_dssp TTGGGHHHHTSGGGGGSTTTH-HHHHHHHHHHHHHHGGG----S-CHHHHHHHHHHHT-TTCH--HHHHHHHHHHHHHS-
T ss_pred HHHHHHHHHcCcchhccCCCc-CcHHHHHHHHHHhCchhhcchhhHHHHHHHHHHHHCCCCcc--hHHHHHHHHHHHHCC
Confidence 45555555554221 222223 2345678888877666653 44554444222233333222 446779999999999
Q ss_pred hhhHHHhhhhhcc--------CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC----------CCHHHH
Q 000599 1286 PFRCLSVIVPLLV--------TEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN----------QSADVR 1347 (1400)
Q Consensus 1286 p~~~l~~l~~~l~--------s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d----------~~seVR 1347 (1400)
+..+-+++.+++. ++..+-....+-++..++-..+++.+...+..+-|++..-+.. +..-=|
T Consensus 233 ~~~l~~yl~~I~~lll~RLq~skT~kf~~~fv~F~~~~~~~~g~~~li~~id~IQ~glF~~il~~v~lp~~~k~~~~~er 312 (435)
T PF03378_consen 233 PEALEPYLKQIFTLLLTRLQSSKTEKFVKRFVVFLSLFAIKYGPDFLIQTIDSIQPGLFGMILEKVWLPDLQKVSGPIER 312 (435)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHC--HHHHHHHHHHHHHHHHHH-HHHHHHHHHTTSTTHHHHHHHHTHHHHGGG--SHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHcCHHHHHHHHHHhcCCcHHHHHHHHhcCchhhcCCcchh
Confidence 9765444444442 4444445555677777777778888877665555544333322 223335
Q ss_pred HHHHHHHHHHHHHhhh-h-c----chhhhhhcHHHHHHHH
Q 000599 1348 KTVVFCLVDIYIMLGK-A-F----LPYLERLNSTQLRLVT 1381 (1400)
Q Consensus 1348 kaAv~~lv~~~~~lge-~-~----~p~l~~L~~s~~kll~ 1381 (1400)
|.++ |+++..+.+ . + ....+.+-.+-.+|++
T Consensus 313 Ki~~---vGltkLL~es~~~~~~~~~~w~~ll~~Ll~ll~ 349 (435)
T PF03378_consen 313 KICA---VGLTKLLCESPAFLSEYSQLWPPLLEALLKLLE 349 (435)
T ss_dssp HHHH---HHHHHHHHSSTTHHHH-CHHHHHHHHHHHHHHH
T ss_pred hHHH---HHHHHHHhccHhhhhHHHHHHHHHHHHHHHHHc
Confidence 5544 455555543 1 1 2344455555555554
No 290
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=48.75 E-value=2.9e+02 Score=29.79 Aligned_cols=79 Identities=15% Similarity=0.159 Sum_probs=61.2
Q ss_pred HhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhh
Q 000599 1291 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLE 1370 (1400)
Q Consensus 1291 ~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~ 1370 (1400)
+++..++.+++.=.+..|+-++...+.. ...+..+++.+....+|.+--|+|+.-.||-.++....+.+..|+.
T Consensus 108 ~~~~~w~~s~~~~~rR~~~~~~~~~~~~------~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~ 181 (197)
T cd06561 108 DLLEEWAKSENEWVRRAAIVLLLRLIKK------ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLE 181 (197)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHHHHHh------cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHH
Confidence 8888999887655555666666555544 2355666888899999999999999999999999998888888887
Q ss_pred hhcHH
Q 000599 1371 RLNST 1375 (1400)
Q Consensus 1371 ~L~~s 1375 (1400)
.....
T Consensus 182 ~~~~~ 186 (197)
T cd06561 182 KNGLS 186 (197)
T ss_pred HHHHh
Confidence 65443
No 291
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=48.17 E-value=3.7e+02 Score=28.71 Aligned_cols=166 Identities=16% Similarity=0.189 Sum_probs=85.8
Q ss_pred hHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhch
Q 000599 36 SAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSP 115 (1400)
Q Consensus 36 ~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p 115 (1400)
..++..+++.+.....+.+.......++++..-+.... .+.+....++..|..+.. ..++....+.+...++....
T Consensus 13 ~~n~~~~~~~l~~~~~~~~~~~~~~i~~~i~~~a~~~~-~~~~~~a~l~~~l~~~~~---~~f~~~ll~~~~~~f~~~~~ 88 (209)
T PF02854_consen 13 PSNFESIIDELIKLNWSDDPETLKEIVKLIFEKAVEEP-NFSPLYARLCAALNSRFP---SEFRSLLLNRCQEEFEERYS 88 (209)
T ss_dssp STTHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSG-GGHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHHHhhccHHHHHHHHHHHhhhhhcCc-hHHHHHHHHHHHHhccch---hhHHHHHHHHHHHHHHHhhh
Confidence 34455666666544333366666666666666554433 344444445555555544 12333333333332221000
Q ss_pred hHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCCh----hHHHHHHHHHHHHHhhhC
Q 000599 116 TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNP----GVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 116 ~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~----~VR~aA~~~l~~l~~~~G 191 (1400)
....+ .....+.+-+.+.+.+|.... .+|. ++. +.++..+..++.+... .--+..+++++.+..++|
T Consensus 89 ~~~~~-----~~~~~~~~~~~~~~~fl~eL~-~~~v--v~~-~~i~~~l~~ll~~~~~~~~~~~~~~~ie~~~~lL~~~G 159 (209)
T PF02854_consen 89 NEELE-----ENRQSSKQRRRGNIRFLAELF-NFGV--VSE-KIIFDILRELLSDGTDECQPPPDEENIECLCTLLKTCG 159 (209)
T ss_dssp HHHHH-----HHHHHHHHHHHHHHHHHHHHH-HTTS--SCH-HHHHHHHHHHHHHTSHHCCHHTCHHHHHHHHHHHHHHH
T ss_pred hhhHH-----HHHHHHHHHHhhhhhHHHhhH-hhcc--ccc-hhHHHHHHHHHhcccccccCCCcHhHHHHHHHHHHHHH
Confidence 00111 122233344555666665443 2333 333 4555555666665554 445678999999999999
Q ss_pred hhHHHhhhcCCCChhhHHHHHHHHHhh
Q 000599 192 PQFRDELHRHNLPNSMVKDINARLERI 218 (1400)
Q Consensus 192 ~~l~~~L~~~~l~~~~l~~i~~~~~~~ 218 (1400)
..+.. .+..+..++.+...+...
T Consensus 160 ~~l~~----~~~~~~~l~~~~~~~~~~ 182 (209)
T PF02854_consen 160 KKLEN----SEESPKALDEIFERLQKY 182 (209)
T ss_dssp HHHHH----CHHHHHHHHHHHHHHHHH
T ss_pred HHHhc----CCCchhHHHHHHHHHHHH
Confidence 98871 112345677777777765
No 292
>KOG2081 consensus Nuclear transport regulator [Intracellular trafficking, secretion, and vesicular transport]
Probab=47.46 E-value=3.4e+02 Score=34.17 Aligned_cols=155 Identities=13% Similarity=0.142 Sum_probs=98.7
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC-CChH-HHHHHHHHHHHHHhhcccc
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD-ADSS-VREVALSLINEMLKNQKDV 1246 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d-~~~~-vR~~aL~~L~~l~~~~~~~ 1246 (1400)
+++....+...+ .+|++-.++|.-|..+++.-.... +.++..+++.+-+ +.+. +|-.++.++.++.+....
T Consensus 389 lk~~~~~l~e~~-~~We~~EAaLF~l~~~~~~~~~~e-----~~i~pevl~~i~nlp~Q~~~~~ts~ll~g~~~ew~~~- 461 (559)
T KOG2081|consen 389 LKQMYIRLKENN-ASWEEVEAALFILRAVAKNVSPEE-----NTIMPEVLKLICNLPEQAPLRYTSILLLGEYSEWVEQ- 461 (559)
T ss_pred HHHHHHHHccCC-CchHHHHHHHHHHHHHhccCCccc-----cchHHHHHHHHhCCccchhHHHHHHHHHHHHHHHHHh-
Confidence 455555554433 369999999999988887554332 4566666666655 2222 888898999988876431
Q ss_pred ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcCh--------hh-HHHhhhhhccCCchhhHhHHHHHHHHHHh
Q 000599 1247 MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDP--------FR-CLSVIVPLLVTEDEKTLVTCINCLTKLVG 1317 (1400)
Q Consensus 1247 ~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p--------~~-~l~~l~~~l~s~~~~~~~~alk~l~~lv~ 1317 (1400)
=-+++++++..++....++. ...+|..|...|+..+-- .. ++..+.....+ ..+ ..+++-+..++.
T Consensus 462 ~p~~le~v~~~~~~~~~~~~--~as~~a~~~~~i~~~c~~~~~~l~~~~~~l~~~l~~~~~~-~e~--a~l~~~~s~i~~ 536 (559)
T KOG2081|consen 462 HPELLEPVLRYIRQGLQLKR--LASAAALAFHRICSACRVQMTCLIPSLLELIRSLDSTQIN-EEA--ACLLQGISLIIS 536 (559)
T ss_pred CcHHHHHHHHHHHHHhhhcc--hhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcc-HHH--HHHHHHHHHHHh
Confidence 12457788888888888864 777777777777644322 11 22222222222 222 237888889999
Q ss_pred hcCHHHHHhhhhhhHHHH
Q 000599 1318 RLSQEELMAQLPSFLPAL 1335 (1400)
Q Consensus 1318 ~~~~~~l~~~l~~liP~l 1335 (1400)
+++.+.+..++.++....
T Consensus 537 ~lp~~k~~~~~~el~~~~ 554 (559)
T KOG2081|consen 537 NLPAHKAKIALEELCEPQ 554 (559)
T ss_pred cCCHhhhhHHHHHHhhHH
Confidence 999998888877665443
No 293
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=45.05 E-value=51 Score=35.38 Aligned_cols=89 Identities=11% Similarity=0.177 Sum_probs=51.4
Q ss_pred HHHHHHHHHHHHHHhchhHHHHHHhhhh----hhcCChhHHHHHHHHHHHHHHh-ccCcchhhhhhhHHHHHHhhCCCCh
Q 000599 99 RDAARRLLLTLMEVSSPTIIVERAGSYA----WTHRSWRVREEFARTVTSAIGL-FSATELTLQRAILPPILQMLNDPNP 173 (1400)
Q Consensus 99 re~a~~~L~~l~e~~~p~~V~e~l~~~~----~~~Knpkvr~~~l~~L~~~l~~-fg~~~l~l~k~~lp~l~~~L~d~n~ 173 (1400)
|.....-+..|++.-+...+++.+.... ...+......+|+.||...++. +|...+--...++..++.+|..++.
T Consensus 93 rt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~ 172 (187)
T PF06371_consen 93 RTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNI 172 (187)
T ss_dssp HHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSH
T ss_pred ccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCH
Confidence 3333344555554444444444333211 1123446677888888665553 3433221125789999999999999
Q ss_pred hHHHHHHHHHHHHH
Q 000599 174 GVREAAILCIEEMY 187 (1400)
Q Consensus 174 ~VR~aA~~~l~~l~ 187 (1400)
.+|..+.++|..++
T Consensus 173 ~~r~~~leiL~~lc 186 (187)
T PF06371_consen 173 KTRKLALEILAALC 186 (187)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999998775
No 294
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=44.73 E-value=2.4e+02 Score=36.86 Aligned_cols=77 Identities=16% Similarity=0.173 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCch------------------hhH----hHHHHHHHHHHhhcCHHHH
Q 000599 1267 PKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDE------------------KTL----VTCINCLTKLVGRLSQEEL 1324 (1400)
Q Consensus 1267 k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~------------------~~~----~~alk~l~~lv~~~~~~~l 1324 (1400)
..++..+..|++.|+...+|-.|+-.++..|..-+. ... ..-+++|..+..++++.--
T Consensus 80 ~~~~~~~~~~l~~la~~gnPkE~~l~~~E~l~~l~~ed~~~~~~~~~~~~~~~~~~~~~kf~~Ll~~l~~~l~ri~t~~p 159 (633)
T PF08568_consen 80 SPCVDCCMKCLEELARLGNPKELLLKVCELLEELSPEDEDDEEDDESIERNQIEEPFDLKFYCLLELLQIVLKRIQTKYP 159 (633)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhcccccccccccccccccccchhhhHHHHHHHHHHHHHHHHHhcccch
Confidence 578888999999999999998887777777742111 111 1247888888888876555
Q ss_pred HhhhhhhHHHHHHHhcCCC
Q 000599 1325 MAQLPSFLPALFEAFGNQS 1343 (1400)
Q Consensus 1325 ~~~l~~liP~l~~~~~d~~ 1343 (1400)
.+.|...+++|...+..--
T Consensus 160 s~Fl~~~l~~i~~~~~~~~ 178 (633)
T PF08568_consen 160 SRFLAMALSAILNFLKNNP 178 (633)
T ss_pred hHHHHHHHHHHHHHHHhcc
Confidence 5556666666666666433
No 295
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=43.19 E-value=5.3e+02 Score=29.02 Aligned_cols=168 Identities=15% Similarity=0.093 Sum_probs=90.3
Q ss_pred HHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHH-h---cCCChH--HHHHHHHHHHHHHhh
Q 000599 1169 IPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEV-L---DDADSS--VREVALSLINEMLKN 1242 (1400)
Q Consensus 1169 i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~-l---~d~~~~--vR~~aL~~L~~l~~~ 1242 (1400)
+=+.+..|.+.+. .+-+.-++.-+..+...+...+ ..+..++..+.-. . .+.+.. ..-..-..+..+|+.
T Consensus 39 v~~~L~~L~~~~~--~~~~~~~~rLl~~lw~~~~r~f--~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~ 114 (234)
T PF12530_consen 39 VLQTLVSLVEQGS--LELRYVALRLLTLLWKANDRHF--PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCS 114 (234)
T ss_pred HHHHHHHHHcCCc--hhHHHHHHHHHHHHHHhCchHH--HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHh
Confidence 4455555555542 1233345666666666554332 2344343332221 1 111111 222223468889987
Q ss_pred ccccccccHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHh--hcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhc
Q 000599 1243 QKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLS--QYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRL 1319 (1400)
Q Consensus 1243 ~~~~~~~~~e~~l~~ll~~~-~D~~k~V~~aA~~al~~i~~--~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~ 1319 (1400)
.++ +...+++.|-..+ ++....++.-|-+++..++. .+......++|.+.+..+.-+.-..++=.+-.++-+.
T Consensus 115 ~p~----~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 115 RPD----HGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred Chh----hHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccc
Confidence 776 5555666666666 77778888899999999994 4677788899999883332222222111222232222
Q ss_pred --CHHHHHhhhhhhHHHHHHHhcCCCH
Q 000599 1320 --SQEELMAQLPSFLPALFEAFGNQSA 1344 (1400)
Q Consensus 1320 --~~~~l~~~l~~liP~l~~~~~d~~s 1344 (1400)
..++....-..++..+-+...+.+.
T Consensus 191 ~~~~e~~~~~~~~~l~~lW~~~~~~~~ 217 (234)
T PF12530_consen 191 AVDSEEYEELKRQILQLLWEYTSSSDV 217 (234)
T ss_pred cCChhhhhHHHHHHHHHHHhhcccccc
Confidence 2344444555556666666666664
No 296
>PF10193 Telomere_reg-2: Telomere length regulation protein; InterPro: IPR019337 This entry represents a conserved domain found in a group of proteins called telomere-length regulation, or clock abnormal protein-2, which are conserved from plants to humans. These proteins regulate telomere length and contribute to silencing of sub-telomeric regions []. In vitro the protein binds to telomeric DNA repeats. ; PDB: 3O4Z_B.
Probab=42.86 E-value=1.9e+02 Score=28.69 Aligned_cols=86 Identities=16% Similarity=0.194 Sum_probs=55.7
Q ss_pred chHHHHHHHHHHHhhccccCC---CchhHHHHHHHHHHHhh---C-CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhh
Q 000599 830 HHKVAQAALSTLADIIPSCRK---PFESYMERILPHVFSRL---I-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSL 902 (1400)
Q Consensus 830 n~kV~~~~Le~L~~li~~~~~---~l~~~l~~ll~~L~~kl---g-D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l 902 (1400)
|..-+..+|..+..+|+.-.. ++..+...|+..|+.-- . +.=+..|-.+.-+|-+.. |....+++++.+
T Consensus 18 ~~e~~e~aL~~a~~LIR~k~~fg~el~~~a~eL~~~Ll~L~~~f~~~~Fe~~R~~alval~v~~----P~~~~~~L~~~f 93 (114)
T PF10193_consen 18 DYEKFEAALKSAEKLIRRKPDFGTELSEYAEELLKALLHLQNKFDIENFEELRQNALVALVVAA----PEKVAPYLTEEF 93 (114)
T ss_dssp --S-SHHHHHHHHHHHHS-----SSHHHHHHHHHHHHHH---TT--TTTTHHHHHHHHHHHHHS----GGGHHH-HHHHH
T ss_pred CHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHHHHHh----hHHHHHHHHHHH
Confidence 577778999999999998666 88888888877776533 2 344455655555555544 778888888877
Q ss_pred ccC-CCchhHHHHHHHHH
Q 000599 903 DEQ-RSPKAKLAVIEFAI 919 (1400)
Q Consensus 903 ~~~-~~~k~k~~~L~~l~ 919 (1400)
... -+-..|..+|..|.
T Consensus 94 ~~~~~Sl~qR~~iL~~l~ 111 (114)
T PF10193_consen 94 FSGDYSLQQRMSILSALS 111 (114)
T ss_dssp TTS---THHHHHHHHHHH
T ss_pred hcCCCCHHHHHHHHHHHH
Confidence 553 46789999998875
No 297
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=42.71 E-value=1.1e+02 Score=42.31 Aligned_cols=84 Identities=19% Similarity=0.251 Sum_probs=64.9
Q ss_pred HHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHH
Q 000599 100 DAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAA 179 (1400)
Q Consensus 100 e~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA 179 (1400)
..++.+|..+.+. ++ .+++..+..+.. .+++|-.++...|.+++.......+++ -.++..+.-.++|++.+||+.|
T Consensus 488 ~lgr~AL~nLL~~-N~-dLl~~~IdrCYs-s~~~va~gYF~vlaev~~~~~~~~~~~-~~LL~L~Lfklg~~~~eIR~~A 563 (1120)
T PF14228_consen 488 SLGRRALKNLLEH-NP-DLLDWVIDRCYS-SSPRVAEGYFTVLAEVFSEREYPPCPF-WELLNLVLFKLGDESSEIRSKA 563 (1120)
T ss_pred HHHHHHHHHHHHh-hH-HHHHHHHHHhcC-CChhHHHHHHHHHHHHHHcCCCCCCCH-HHhHHHHHHhhcCCcHHHHHHH
Confidence 4577888888874 33 377777765655 468898999998988877666555566 4788888888999999999999
Q ss_pred HHHHHHHH
Q 000599 180 ILCIEEMY 187 (1400)
Q Consensus 180 ~~~l~~l~ 187 (1400)
+++|-.+-
T Consensus 564 ~qLL~~Le 571 (1120)
T PF14228_consen 564 MQLLRALE 571 (1120)
T ss_pred HHHHHHHH
Confidence 99988764
No 298
>KOG4199 consensus Uncharacterized conserved protein [Function unknown]
Probab=41.99 E-value=3.1e+02 Score=32.39 Aligned_cols=139 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred HHHHHhcCC-ChHHHH---HHHHHHHHHHhhcccc---ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh
Q 000599 1216 AVLEVLDDA-DSSVRE---VALSLINEMLKNQKDV---MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR 1288 (1400)
Q Consensus 1216 ~Ll~~l~d~-~~~vR~---~aL~~L~~l~~~~~~~---~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~ 1288 (1400)
.|++.+.|. .+.+|+ .||.+|+.|+.+-..+ ++..--..|..++..+.|. +-|..++..|+..|+-. .|+.
T Consensus 287 tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~-p~Vi~~~~a~i~~l~LR-~pdh 364 (461)
T KOG4199|consen 287 TLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDD-PLVIQEVMAIISILCLR-SPDH 364 (461)
T ss_pred HHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCC-hHHHHHHHHHHHHHHhc-Ccch
Confidence 566777774 344664 4588888888754332 3333223344445555555 68888888888887754 4443
Q ss_pred HHHhhh--------hhccC--CchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1289 CLSVIV--------PLLVT--EDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1289 ~l~~l~--------~~l~s--~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
--.++- ..++. .....-.-++.|+..++ ..+.+.-...|.-=++.|+..-.-...+++.+|..+|-++
T Consensus 365 sa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv-~rs~~~~~~~l~~GiE~Li~~A~~~h~tce~~akaALRDL 442 (461)
T KOG4199|consen 365 SAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIV-VRSAENRTILLANGIEKLIRTAKANHETCEAAAKAALRDL 442 (461)
T ss_pred HHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHH-HhhhhccchHHhccHHHHHHHHHhcCccHHHHHHHHHHhc
Confidence 222222 11211 12223344688888888 4444555555555566666666666777888887776554
No 299
>KOG0929 consensus Guanine nucleotide exchange factor [Intracellular trafficking, secretion, and vesicular transport]
Probab=41.90 E-value=83 Score=43.98 Aligned_cols=136 Identities=18% Similarity=0.298 Sum_probs=91.3
Q ss_pred hhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccccccc-HHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHH
Q 000599 1204 SIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDS-VEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVL 1281 (1400)
Q Consensus 1204 ~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~-~e~~l~~ll~~~-~D~~k~V~~aA~~al~~i~ 1281 (1400)
.+|..+...++..+-.++.+....||..+|.++.+++...|+.|... -+.++. ++--+ ..-..+....
T Consensus 1166 ~~~~~~wfP~l~~ls~i~~~~~~~vr~~al~vlF~il~~~g~~F~~~~We~v~~-~~fpIF~~~~~~~~~~--------- 1235 (1514)
T KOG0929|consen 1166 DVWNSGWFPMLFQLSKIINDYRLEVRKRALEVLFDILKEHGDDFSKEFWEDVFR-ILFPIFDNVKLDEDES--------- 1235 (1514)
T ss_pred ccceeeeehhHhhhhHHhhccHHHHHHHHHHHHHHHHHhhhhhccHHHHHHHHH-heeecccccCcccchh---------
Confidence 34554445566666677777788899999999999999999999865 444444 43222 2211111111
Q ss_pred hhcChhhHHHhhhhhccCCchh--hHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Q 000599 1282 SQYDPFRCLSVIVPLLVTEDEK--TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYI 1359 (1400)
Q Consensus 1282 ~~~~p~~~l~~l~~~l~s~~~~--~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~ 1359 (1400)
...+|- +-..|+..+..|+.+.= ++|...||.++--+..|+...+..+-+..+.||+-+..
T Consensus 1236 ----------------~~~eW~~tT~~~Al~~~v~lf~~~~-~~l~~lL~~~~~ll~~ci~~~n~~la~~g~~cl~~l~~ 1298 (1514)
T KOG0929|consen 1236 ----------------EKDEWLSTTCNHALQALVDLFTQFF-KQLNNLLPKVLGLLVGCIKQDNQQLARIGTSCLLQLVS 1298 (1514)
T ss_pred ----------------hhhHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCcchhhHHhHHHHHHHHHH
Confidence 111242 33445555555543333 67778888888889999999999999999999999988
Q ss_pred Hhhhhcc
Q 000599 1360 MLGKAFL 1366 (1400)
Q Consensus 1360 ~lge~~~ 1366 (1400)
..|+.+.
T Consensus 1299 ~n~~~fs 1305 (1514)
T KOG0929|consen 1299 SNGEKFS 1305 (1514)
T ss_pred hcccccC
Confidence 8886443
No 300
>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]
Probab=41.86 E-value=1.4e+02 Score=34.12 Aligned_cols=46 Identities=20% Similarity=0.238 Sum_probs=29.7
Q ss_pred cCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHH
Q 000599 129 HRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIE 184 (1400)
Q Consensus 129 ~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~ 184 (1400)
.-+|.||.+|...|... +. ...++.|.+.++|..+-||+.+.-.|-
T Consensus 231 ~E~pMVRhEaAeALGaI----a~------e~~~~vL~e~~~D~~~vv~esc~vald 276 (289)
T KOG0567|consen 231 TEHPMVRHEAAEALGAI----AD------EDCVEVLKEYLGDEERVVRESCEVALD 276 (289)
T ss_pred hcchHHHHHHHHHHHhh----cC------HHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 44677777777666321 11 467777778888888877776655443
No 301
>KOG1104 consensus Nuclear cap-binding complex, subunit NCBP1/CBP80 [RNA processing and modification]
Probab=41.85 E-value=6.9e+02 Score=32.68 Aligned_cols=179 Identities=15% Similarity=0.212 Sum_probs=105.9
Q ss_pred hHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcC
Q 000599 1185 TSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD 1264 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D 1264 (1400)
++-..-++.+...+-+.+......+++.+.-.+..-+.. -+..-|.+|..-+..++.+...|+ +|..++++-..
T Consensus 25 e~l~krl~~~i~~vg~~s~ss~e~~l~~l~~~l~~~~~~----~~~~iL~~L~~ca~~lP~K~~~ya--TLvgllN~kn~ 98 (759)
T KOG1104|consen 25 ETLEKRLESLIREVGEPSGSSVEDNLENLVAVLEADLEN----FKSKILDILNTCAVYLPEKITAYA--TLVGLLNLKNF 98 (759)
T ss_pred HHHHHHHHHHHHhhcCCCCCcHHHhHHHHHHHHHhhHHH----HHHHHHHHHHHHHHHcccchhHHH--HHHHHHhccch
Confidence 344444455444444444444455666444444444443 566678888888888888888887 55566664322
Q ss_pred CcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHH--hhcCHHHHHhhhhhhHHHHHHHhcCC
Q 000599 1265 AVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLV--GRLSQEELMAQLPSFLPALFEAFGNQ 1342 (1400)
Q Consensus 1265 ~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv--~~~~~~~l~~~l~~liP~l~~~~~d~ 1342 (1400)
..+.+++..++..+. ..+.+.+|..-..-+.||.-|. .-++++.|...+..++.. +....
T Consensus 99 ------~fg~~~v~~~~~~~q---------~sl~~~~~n~ar~llrfL~dL~~~~vl~~~sli~l~esl~~~---~~e~~ 160 (759)
T KOG1104|consen 99 ------NFGGEFVEYMIEELQ---------ESLKSGNWNEARYLLRFLSDLSNCHVLQADSLINLFESLLDA---AIEEN 160 (759)
T ss_pred ------hhHHHHHHHHHHHHH---------HHhhcCChHHHHHHHHHHHHHhcCCccChHHHHHHHHHHHHH---HHhhc
Confidence 235555555554432 5566788887777889999998 777888887776666443 33455
Q ss_pred CHHHHHH-HHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHHHHHhh
Q 000599 1343 SADVRKT-VVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYANRI 1387 (1400)
Q Consensus 1343 ~seVRka-Av~~lv~~~~~lge~~~p~l~~L~~s~~kll~~yi~r~ 1387 (1400)
.+.||.= =++|+..-+--+|.+..--.+.-...-.--+++|+++-
T Consensus 161 ~Pqvr~D~~v~~vLs~lPw~g~el~e~~~~~~e~ll~~ie~Yl~~R 206 (759)
T KOG1104|consen 161 VPQVRRDYYVYCVLSSLPWFGRELNEKKPTEMEELLVYIEIYLKKR 206 (759)
T ss_pred CcchhhhHHHHHHHhccchhhhhhcccchHHHHHHHHHHHHHHHHh
Confidence 7777753 34454444445555443222222222234467777663
No 302
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=41.48 E-value=1.6e+02 Score=28.50 Aligned_cols=58 Identities=17% Similarity=0.296 Sum_probs=41.4
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccc
Q 000599 789 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPS 847 (1400)
Q Consensus 789 ~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~ 847 (1400)
-|.-||..+..-+..+--...++. +-..++.-+..||+.+..-.-..+|+.|..++..
T Consensus 3 IR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~ 60 (98)
T PF14726_consen 3 IRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKS 60 (98)
T ss_pred HHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhC
Confidence 377788888876666543333332 3456788888899988887888889988887665
No 303
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=41.24 E-value=2.7e+02 Score=33.22 Aligned_cols=109 Identities=11% Similarity=0.205 Sum_probs=57.2
Q ss_pred hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHH-hccC------c
Q 000599 80 FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIG-LFSA------T 152 (1400)
Q Consensus 80 ~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~-~fg~------~ 152 (1400)
+..++-.++.++..... .+..+..++..++... +..+.. +++.+.+.+...+|..|.+++. .-|. .
T Consensus 25 ~~~~L~~~l~~ls~~~~-~~~~g~~l~~~iL~~~-----~k~lyr-~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~ 97 (330)
T PF11707_consen 25 VSSVLALLLKKLSSDLS-FQSYGLELIRSILQNH-----LKLLYR-SLSSSKPSLTNPALRLLTAIVSFDGGALAREVLR 97 (330)
T ss_pred HHHHHHHHHHHhccchh-HHHHHHHHHHHHHHHH-----HHHHHH-HhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence 33344444444444333 4444444444444321 333443 5666666666677777777665 2111 1
Q ss_pred chhhhhhhHHHHHHhhCCC-----C--------hhHHHHHHHHHHHHHhhhChhHHHhh
Q 000599 153 ELTLQRAILPPILQMLNDP-----N--------PGVREAAILCIEEMYTYAGPQFRDEL 198 (1400)
Q Consensus 153 ~l~l~k~~lp~l~~~L~d~-----n--------~~VR~aA~~~l~~l~~~~G~~l~~~L 198 (1400)
.+++ -++.+.+++..+ + +.||...+.++..+.......++..|
T Consensus 98 ~fd~---~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F~Lsfl~~~~~~~~~~l 153 (330)
T PF11707_consen 98 SFDF---SLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRFWLSFLSSGDPELKRDL 153 (330)
T ss_pred hcCC---chhhHHHHhccccccccccccccccCcCHHHHHHHHHHHHHccCCHHHHHHH
Confidence 1222 122233333211 1 38999999999999988777665544
No 304
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=41.03 E-value=7.6e+02 Score=31.86 Aligned_cols=134 Identities=11% Similarity=0.142 Sum_probs=92.8
Q ss_pred hcCCChHHHHHHHHHHHHHHhh---ccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh-------HH
Q 000599 1221 LDDADSSVREVALSLINEMLKN---QKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR-------CL 1290 (1400)
Q Consensus 1221 l~d~~~~vR~~aL~~L~~l~~~---~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~-------~l 1290 (1400)
..-+++..+.+||..+....+. +...++. .-++.+++....||.--|..++..++..++--|++.+ .|
T Consensus 386 ~~~kd~~~~aaa~l~~~s~srsV~aL~tg~~~--~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs~~kskfl~~ngI 463 (678)
T KOG1293|consen 386 PPIKDHDFVAAALLCLKSFSRSVSALRTGLKR--NDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFSNLKSKFLRNNGI 463 (678)
T ss_pred cccccHHHHHHHHHHHHHHHHHHHHHHcCCcc--chhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcccHHHHHHHcCcH
Confidence 3346788787787777655544 3344432 2234444555588888888899999999998898875 67
Q ss_pred HhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhh-hHHHHHHHhcCCCHHHHHHHHHHHHH
Q 000599 1291 SVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPS-FLPALFEAFGNQSADVRKTVVFCLVD 1356 (1400)
Q Consensus 1291 ~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~-liP~l~~~~~d~~seVRkaAv~~lv~ 1356 (1400)
..|...+.+.+.-++.-++..|..++-....+.-...+.. ..-.|..-++|.+.+|...+..-|-.
T Consensus 464 d~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRN 530 (678)
T KOG1293|consen 464 DILESMLTDPDFNSRANSLWVLRHLMFNCDEEEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRN 530 (678)
T ss_pred HHHHHHhcCCCchHHHHHHHHHHHHHhcchHHHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 7788888788777788888888888755554433333333 34467788899999999987665433
No 305
>PF14726 RTTN_N: Rotatin, an armadillo repeat protein, centriole functioning
Probab=40.99 E-value=1.8e+02 Score=28.21 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHHHhcCC--hhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc
Q 000599 1185 TSKHGALQQLIKASVAND--HSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ 1243 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~--~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~ 1243 (1400)
|-|..|++.|..=+..+- ..... +-..++..|++|++......-+.+|.+|..++++.
T Consensus 2 EIR~RAL~~I~~Kl~~~Li~~~dl~-~~~~Ll~~LleWFnf~~~~~~~~VL~Ll~~L~~~~ 61 (98)
T PF14726_consen 2 EIRVRALESIEFKLEHGLISEEDLV-KERLLLKQLLEWFNFPPVPMKEEVLALLLRLLKSP 61 (98)
T ss_pred hHHHHHHHHHHHHHHhccccHHHHc-cHHHHHHHHHHHhCCCCCccHHHHHHHHHHHHhCc
Confidence 568889999876666552 12222 45788889999999876667788999999998864
No 306
>PF01417 ENTH: ENTH domain; InterPro: IPR001026 The ENTH (Epsin N-terminal homology) domain is approximately 150 amino acids in length and is always found located at the N-termini of proteins. The domain forms a compact globular structure, composed of 9 alpha-helices connected by loops of varying length. The general topology is determined by three helical hairpins that are stacked consecutively with a right hand twist []. An N-terminal helix folds back, forming a deep basic groove that forms the binding pocket for the Ins(1,4,5)P3 ligand []. The ligand is coordinated by residues from surrounding alpha-helices and all three phosphates are multiply coordinated. The coordination of Ins(1,4,5)P3 suggests that ENTH is specific for particular head groups. Proteins containing this domain have been found to bind PtdIns(4,5)P2 and PtdIns(1,4,5)P3 suggesting that the domain may be a membrane interacting module. The main function of proteins containing this domain appears to be to act as accessory clathrin adaptors in endocytosis, Epsin is able to recruit and promote clathrin polymerisation on a lipid monolayer, but may have additional roles in signalling and actin regulation []. Epsin causes a strong degree of membrane curvature and tubulation, even fragmentation of membranes with a high PtdIns(4,5)P2 content. Epsin binding to membranes facilitates their deformation by insertion of the N-terminal helix into the outer leaflet of the bilayer, pushing the head groups apart. This would reduce the energy needed to curve the membrane into a vesicle, making it easier for the clathrin cage to fix and stabilise the curved membrane. This points to a pioneering role for epsin in vesicle budding as it provides both a driving force and a link between membrane invagination and clathrin polymerisation. ; PDB: 1H0A_A 1EYH_A 1EDU_A 2QY7_B 1XGW_A 2V8S_E 1VDY_A 2DCP_A 1INZ_A 3ONL_B ....
Probab=40.68 E-value=1.7e+02 Score=29.38 Aligned_cols=97 Identities=19% Similarity=0.184 Sum_probs=59.3
Q ss_pred hcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhh---ccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhH
Q 000599 8 ARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLL---KDNNFKVSQGALQSLASAAVLSGEHFKLHFNALV 84 (1400)
Q Consensus 8 l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l---~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~il 84 (1400)
..+.+|----.-+++|.... .+..++..+++.|.+.+ ..++..+..+||.+|..|+.+-...|...+..-+
T Consensus 12 T~~d~~gp~~~~l~eIa~~t------~~~~~~~~I~~~l~kRL~~~~~k~wr~~~KaL~ll~yLl~nG~~~~~~~~~~~~ 85 (125)
T PF01417_consen 12 TSNDPWGPPGKLLAEIAQLT------YNSKDCQEIMDVLWKRLSKSDGKNWRHVYKALTLLEYLLKNGSERFVDELRDHI 85 (125)
T ss_dssp TSSSSSS--HHHHHHHHHHT------TSCHHHHHHHHHHHHHHHSSTSSGHHHHHHHHHHHHHHHHHS-HHHHHHHHHTH
T ss_pred cCCCCCCcCHHHHHHHHHHH------hccccHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHCCHHHHHHHHHHH
Confidence 33456766666666664443 12356778888888888 7889999999999999999775554444332222
Q ss_pred HHHH--HHh--CC--CCh---hHHHHHHHHHHHHH
Q 000599 85 PAVV--ERL--GD--AKQ---PVRDAARRLLLTLM 110 (1400)
Q Consensus 85 p~Ll--eKL--gD--~K~---~vre~a~~~L~~l~ 110 (1400)
..|- ..+ .| .++ .||+.|.+++..+.
T Consensus 86 ~~I~~l~~f~~~d~~g~d~~~~VR~~A~~i~~lL~ 120 (125)
T PF01417_consen 86 DIIRELQDFQYVDPKGKDQGQNVREKAKEILELLN 120 (125)
T ss_dssp HHHHGGGG---BBTTSTBHHHHHHHHHHHHHHHHT
T ss_pred HHHhhcceeeccCCCCccHHHHHHHHHHHHHHHhC
Confidence 2111 222 12 233 38888888887664
No 307
>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4.2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.
Probab=39.80 E-value=70 Score=33.22 Aligned_cols=117 Identities=11% Similarity=0.182 Sum_probs=65.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh---------hHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHH
Q 000599 1253 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF---------RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE 1323 (1400)
Q Consensus 1253 ~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~---------~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~ 1323 (1400)
-..-.|++.++++... ..+..+..+...++|- ..|.-|...=.+...-++..|+++|+.+.--+.
T Consensus 22 ~Qt~~lielLk~~~~~---~~~~lldLL~~RV~PGVD~AA~VKA~FL~~ia~g~~~~~~Is~~~Av~LLGtM~GGYN--- 95 (154)
T PF11791_consen 22 EQTAELIELLKNPPAG---EEAFLLDLLTNRVPPGVDEAAYVKAEFLAAIAKGEISSPLISPAEAVELLGTMLGGYN--- 95 (154)
T ss_dssp HHHHHHHHHHHS--TT----HHHHHHHHHHSS--TT-HHHHHHHHHHHHHHTTSS-BTTB-HHHHHHHHTTS-SSTT---
T ss_pred HHHHHHHHHHhCCCCc---cHHHHHHHHHhcCCCCCChHHHHHHHHHHHHHcCCccCCCcCHHHHHHHHhhccCCCc---
Confidence 3445566666665333 3345667777777772 122222222223344577889999999998887
Q ss_pred HHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhh--hcchhhhhhcHHHHHHHHHHH
Q 000599 1324 LMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK--AFLPYLERLNSTQLRLVTIYA 1384 (1400)
Q Consensus 1324 l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge--~~~p~l~~L~~s~~kll~~yi 1384 (1400)
+..|++.+.+.+.++.+.|..+|-..-.+++. ++.-.-.. ++--+..|+.|.
T Consensus 96 --------V~~LI~~L~~~d~~lA~~Aa~aLk~TlLvyDaf~dv~~~ak~-N~~Ak~VleSWA 149 (154)
T PF11791_consen 96 --------VQPLIDLLKSDDEELAEEAAEALKNTLLVYDAFNDVAELAKA-NAYAKEVLESWA 149 (154)
T ss_dssp --------HHHHHHGG--G-TTTHHHHHHHHHT--TTCCHHHHHHHHHHT--HHHHHHHHHHH
T ss_pred --------HHHHHHHHcCCcHHHHHHHHHHHHhhHHHHhhHHHHHHHHHc-CHHHHHHHHHHh
Confidence 67778999999999999999999887777763 44433333 444455555443
No 308
>PF12243 CTK3: CTD kinase subunit gamma CTK3
Probab=39.35 E-value=1.2e+02 Score=31.18 Aligned_cols=87 Identities=10% Similarity=0.025 Sum_probs=56.9
Q ss_pred HHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCC-cchHHHHHHHhhhCCCHHHHHHHHHHHHHHHhhCCCcc-cccc
Q 000599 368 AEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKA-VRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAP-EIQR 445 (1400)
Q Consensus 368 a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~-~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~-~l~~ 445 (1400)
+..-+..+|+.+.-++..+..++.-||+. -.. +.+++-|++.|. .-+--.|...+.|+..+.+...... ....
T Consensus 6 ~r~~F~~~L~~L~aS~qSi~kaa~fAlk~----~~~~edL~~cIle~le-~~~lN~R~nI~~fID~l~e~~~~~~~~~~~ 80 (139)
T PF12243_consen 6 VRMQFTQLLRRLNASQQSIQKAAQFALKN----RDMEEDLWSCILEQLE-KENLNTRINIFYFIDSLCESSQKSKKYNYP 80 (139)
T ss_pred HHHHHHHHHHHcchhHHHHHHHHHHHHHc----cccHHHHHHHHHHHHh-ccchhhHHHHHHHHHHHHHHHHhcccccch
Confidence 45556678888887776676666666654 444 588999999994 4477789999999988766654321 1233
Q ss_pred cHHHHHHHHHHHcC
Q 000599 446 SADLYEDLIRCCVA 459 (1400)
Q Consensus 446 ~~~~l~~~i~k~l~ 459 (1400)
++..+...|.+.+.
T Consensus 81 Yv~~l~~dL~~Iv~ 94 (139)
T PF12243_consen 81 YVSMLQRDLPRIVD 94 (139)
T ss_pred hHHHHHHHHHHHHH
Confidence 45555555555443
No 309
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=39.27 E-value=93 Score=42.01 Aligned_cols=121 Identities=17% Similarity=0.211 Sum_probs=81.6
Q ss_pred HHHhcCCcHHHHHHHHHHHHHHHhhcChh----hHHHhhhhhccCCchhhHhHHHHHHHHHHhhcC-HHHHHhhhhhhHH
Q 000599 1259 LHVTKDAVPKVSNEAEHCLTVVLSQYDPF----RCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLS-QEELMAQLPSFLP 1333 (1400)
Q Consensus 1259 l~~~~D~~k~V~~aA~~al~~i~~~~~p~----~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~-~~~l~~~l~~liP 1333 (1400)
++.|.|-..+++..+.+.+-.|+..||-. --|+++-=.|..++..+|+.|++.|-+|++.-. .+-|.....-+=.
T Consensus 293 VHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~ 372 (1048)
T KOG2011|consen 293 VHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKD 372 (1048)
T ss_pred eeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHH
Confidence 47889999999999999999999998874 367776666667888899999999999997710 1112222222222
Q ss_pred HHHHH-hcCCCHHHHHHHHHHHHHH--HHHhhh-hcchhhhhhcHHHHHH
Q 000599 1334 ALFEA-FGNQSADVRKTVVFCLVDI--YIMLGK-AFLPYLERLNSTQLRL 1379 (1400)
Q Consensus 1334 ~l~~~-~~d~~seVRkaAv~~lv~~--~~~lge-~~~p~l~~L~~s~~kl 1379 (1400)
-+++- ..|.+..||-.+...+... +..+.+ |+.+.+.-+.++.+..
T Consensus 373 RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~d~di~~Vy~Li~d~~r~~ 422 (1048)
T KOG2011|consen 373 RIVEMADRDRNVSVRAVGLVLCLLLSSSGLLSDKDILIVYSLIYDSNRRV 422 (1048)
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHhcccccChhHHHHHHHHHhccCcch
Confidence 22222 4677777887777666655 455555 7777777666666543
No 310
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=38.72 E-value=2.8e+02 Score=30.13 Aligned_cols=106 Identities=19% Similarity=0.220 Sum_probs=72.9
Q ss_pred cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh-h---HHHhhhhhccC-----CchhhHhHHHHHHHHHHhhcC
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF-R---CLSVIVPLLVT-----EDEKTLVTCINCLTKLVGRLS 1320 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~-~---~l~~l~~~l~s-----~~~~~~~~alk~l~~lv~~~~ 1320 (1400)
.+..++.+|+....++-..|+..|..|+..+.....|. . -.+.|..++.. -+|..-..+...+..|+ .
T Consensus 4 ~~~~~~~~llrqa~EKiDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~~~~w~~~~~~F~~l~~LL---~ 80 (193)
T PF12612_consen 4 LVQQIIGGLLRQAAEKIDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEASLNWSSSSEYFPRLVKLL---D 80 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHcccccccccccCCHHHHHHHHHHHh---c
Confidence 45678888898888888999999999998888443231 1 12223333321 23655555666555554 2
Q ss_pred HHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Q 000599 1321 QEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIML 1361 (1400)
Q Consensus 1321 ~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~l 1361 (1400)
.+ ..-..++-||+-..+.-..++.++|..+|+.++.-+
T Consensus 81 ~~---~y~~~ll~Glv~S~G~~tesl~~~s~~AL~~~~~~~ 118 (193)
T PF12612_consen 81 LP---EYRYSLLSGLVVSAGGLTESLVRASSAALLSYLREL 118 (193)
T ss_pred cH---HHHHHHHhHHHhcCCCCchhHHHHHHHHHHHHHHHh
Confidence 12 344558889999999999999999999999988644
No 311
>KOG2229 consensus Protein required for actin cytoskeleton organization and cell cycle progression [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=38.45 E-value=2.8e+02 Score=34.45 Aligned_cols=93 Identities=13% Similarity=0.176 Sum_probs=63.2
Q ss_pred ChhHHHHHHHHHHHHHH--HhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcc--hhhhhhhHHHHHHhhCC
Q 000599 95 KQPVRDAARRLLLTLME--VSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE--LTLQRAILPPILQMLND 170 (1400)
Q Consensus 95 K~~vre~a~~~L~~l~e--~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~--l~l~k~~lp~l~~~L~d 170 (1400)
-+.+|+....||+.|.. .+.+..+++.+++ .+.--.-..|.-....|+..|....... -++.+.+-..+..+|.+
T Consensus 33 p~~Lr~~i~~~LiLLrNk~~i~~~~LL~lff~-l~~~~dk~lRkllythiv~~Ikn~n~~~kn~klnkslq~~~fsml~~ 111 (616)
T KOG2229|consen 33 PPELREKIVKALILLRNKNLIVAEDLLELFFP-LLRCGDKNLRKLLYTHIVTTIKNINKKHKNDKLNKSLQAFMFSMLDQ 111 (616)
T ss_pred CHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH-HHhcCchhHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHhC
Confidence 34478888889888886 4677778877776 4443333446666666777776544332 23434566666789999
Q ss_pred CChhHHHHHHHHHHHHHh
Q 000599 171 PNPGVREAAILCIEEMYT 188 (1400)
Q Consensus 171 ~n~~VR~aA~~~l~~l~~ 188 (1400)
+|+.--.-|..++++||+
T Consensus 112 ~d~~~ak~a~~~~~eL~k 129 (616)
T KOG2229|consen 112 SDSTAAKMALDTMIELYK 129 (616)
T ss_pred CCchhHHHHHHHHHHHHH
Confidence 999877777888888886
No 312
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=37.56 E-value=7.3e+02 Score=34.64 Aligned_cols=70 Identities=13% Similarity=0.140 Sum_probs=54.6
Q ss_pred HHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh
Q 000599 1213 ILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ 1283 (1400)
Q Consensus 1213 ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~ 1283 (1400)
++.+.++.+-..++.+.+..+.+|.+++-.....--++. .+|.-+|-.++|+..+|+..|...+++|-..
T Consensus 504 Ll~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~-~LL~L~Lfklg~~~~eIR~~A~qLL~~Le~R 573 (1120)
T PF14228_consen 504 LLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFW-ELLNLVLFKLGDESSEIRSKAMQLLRALEER 573 (1120)
T ss_pred HHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHH-HhHHHHHHhhcCCcHHHHHHHHHHHHHHHHH
Confidence 667777777767777888889999999875554323333 4778888999999999999999999988754
No 313
>cd03562 CID CID (CTD-Interacting Domain) domain family; CID is present in several RNA-processing factors such as Pcf11 and Nrd1. Pcf11 is a conserved and essential subunit of the yeast cleavage factor IA, which is required for polyadenylation-dependent 3'-RNA processing and transcription termination. Nrd1 is implicated in polyadenylation-independent 3'-RNA processing. CID binds tightly to the carboxy-terminal domain (CTD) of RNA polymerase (Pol) II. During transcription, Pol II synthesizes eukaryotic messenger RNA. Transcription is coupled to RNA processing through the CTD, which consists of up to 52 repeats of the sequence Tyr 1-Ser 2-Pro 3-Thr 4-Ser 5-Pro 6-Ser 7. CID contains eight alpha-helices in a right-handed superhelical arrangement, which closely resembles that of the VHS domains and ARM (Armadillo) repeat proteins, except for its two amino-terminal helices.
Probab=37.23 E-value=1.1e+02 Score=30.13 Aligned_cols=75 Identities=13% Similarity=0.265 Sum_probs=49.5
Q ss_pred HHHHHHHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhh-CCchhhhHHHHHHHHHHHhccCC
Q 000599 816 EKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKTYS 890 (1400)
Q Consensus 816 ~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~kl-gD~k~~vr~~~~~~L~~~~~~~~ 890 (1400)
..+++.+.+++......--..+|=.+..++...+..-..+....++.+|... ...-+.+|.++.++++.|.+.++
T Consensus 36 ~~iv~~i~~~i~~~~~~~KL~~LYL~dsIvkn~~~~~~~~~~~~~~~~f~~~~~~~~~~~r~kl~rl~~iW~~~~~ 111 (114)
T cd03562 36 KEIVEIIEKHIKKCPPEQKLPLLYLLDSIVKNVGRKYKEFFSEFLVPLFLDAYEKVDEKTRKKLERLLNIWEERFV 111 (114)
T ss_pred HHHHHHHHHHHHhCCcccchHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCCC
Confidence 3555555555554433333466777777777777666555555555555543 46678899999999999987554
No 314
>KOG1837 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.54 E-value=9.6e+02 Score=34.19 Aligned_cols=71 Identities=13% Similarity=0.094 Sum_probs=59.6
Q ss_pred hhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHh
Q 000599 127 WTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDE 197 (1400)
Q Consensus 127 ~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~ 197 (1400)
...-++++|--.+..+...+...|...+.+....||++.++++|-+.+|--.+..++-.+-...|+.+..+
T Consensus 1550 trss~~~~r~~ai~~~~~l~~~lge~~~~lL~q~iPfLaEL~ED~~~~Ve~~~q~li~q~e~~lGE~l~~y 1620 (1621)
T KOG1837|consen 1550 TRSSSRKARYLAIIQVKLLYTKLGENVIVLLPQSIPFLAELMEDEDDEVECLCQKLIRQLEEVLGEPLQSY 1620 (1621)
T ss_pred hccccHHHHHHHHHHHHHHHHHhcchhHHhhhhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHHhchhhhhc
Confidence 44566788888888888888888887776657899999999999999999999998888888899877654
No 315
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=36.44 E-value=47 Score=25.53 Aligned_cols=28 Identities=18% Similarity=0.370 Sum_probs=24.4
Q ss_pred hHHHHHHhhCCCChhHHHHHHHHHHHHH
Q 000599 160 ILPPILQMLNDPNPGVREAAILCIEEMY 187 (1400)
Q Consensus 160 ~lp~l~~~L~d~n~~VR~aA~~~l~~l~ 187 (1400)
.++.+++++.+.+++|+..|..+|..|.
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl~ 40 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNLS 40 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence 6788899999999999999999988763
No 316
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=36.09 E-value=2.9e+02 Score=35.89 Aligned_cols=115 Identities=17% Similarity=0.216 Sum_probs=73.4
Q ss_pred HHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh--H
Q 000599 1212 QILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR--C 1289 (1400)
Q Consensus 1212 ~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~--~ 1289 (1400)
+.+..|.++..|.=..|+..+|.++-.|+.+.+..= ..+|-.++|++||+...|..-|.-.+..|...-|..+ +
T Consensus 304 rfievLe~lS~D~L~~vk~raL~ti~~lL~~kPEqE----~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vv 379 (988)
T KOG2038|consen 304 RFIEVLEELSKDPLEEVKKRALKTIYDLLTNKPEQE----NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVV 379 (988)
T ss_pred HHHHHHHHHccccHHHHHHHHHHHHHHHHhCCcHHH----HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeeh
Confidence 334455555566656688889999999998655431 1366778899999999998888888877766534433 3
Q ss_pred HHhhhhhc-c-CCchhhHhHHHHHHHHHHhhcCHHHHHhhhhh
Q 000599 1290 LSVIVPLL-V-TEDEKTLVTCINCLTKLVGRLSQEELMAQLPS 1330 (1400)
Q Consensus 1290 l~~l~~~l-~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~ 1330 (1400)
+.-|-.++ + +-+.+....|+-+|..++=....+.+...|=+
T Consensus 380 i~EIer~~FRpn~~~ra~Yyav~fLnQ~~Lshke~dvAnrLi~ 422 (988)
T KOG2038|consen 380 IDEIERLAFRPNVSERAHYYAVIFLNQMKLSHKESDVANRLIS 422 (988)
T ss_pred HHHHHHHHcccCccccceeehhhhhhhhHhccchHHHHHHHHH
Confidence 44444333 2 23455666677777776655555556555433
No 317
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=35.03 E-value=4.4e+02 Score=31.77 Aligned_cols=80 Identities=20% Similarity=0.280 Sum_probs=46.9
Q ss_pred hhcCCCCChhHHHHHHHHHHHHHhcCChh---------hHHHHHHHHH----HHHHHHhcCCChHHHHHHHHHHHHHHhh
Q 000599 1176 MCNGNDGSPTSKHGALQQLIKASVANDHS---------IWTKYFNQIL----TAVLEVLDDADSSVREVALSLINEMLKN 1242 (1400)
Q Consensus 1176 l~~~~~~~~~~r~~al~~L~~~l~~~~~~---------~~~~~f~~ll----~~Ll~~l~d~~~~vR~~aL~~L~~l~~~ 1242 (1400)
|+.+.|. -+.++..+.|.+.++.+.-+ -+.+||..+- .+=++.+.|.+.+||..|..-|-.+|+-
T Consensus 14 l~~a~dk--~q~v~~y~~il~~~k~~~k~k~lasq~ip~~fk~fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~ 91 (460)
T KOG2213|consen 14 LSEATDK--SQHVDDYEGILKAVKGTSKEKRLASQFIPRFFKHFPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKG 91 (460)
T ss_pred HHhhchh--hhhHHHHHHHHHHhhcchHHHHHHHHHHHHHHhhCchhhhHHHHhhhccccccchhhHHHHHhccchhccC
Confidence 4444432 26677777777777655311 1223443333 2344566778889999999999998883
Q ss_pred ccccccccHHHHHHHHHH
Q 000599 1243 QKDVMEDSVEIVIEKLLH 1260 (1400)
Q Consensus 1243 ~~~~~~~~~e~~l~~ll~ 1260 (1400)
.+-.-+..+|..+|+
T Consensus 92 ---d~~~rv~d~l~qLLn 106 (460)
T KOG2213|consen 92 ---DALSRVNDVLVQLLN 106 (460)
T ss_pred ---chhhhhHHHHHHHHH
Confidence 333334445555555
No 318
>PF00613 PI3Ka: Phosphoinositide 3-kinase family, accessory domain (PIK domain); InterPro: IPR001263 Phosphatidylinositol 3-kinase (PI3-kinase) (2.7.1.137 from EC) is an enzyme that phosphorylates phosphoinositides on the 3-hydroxyl group of the inositol ring. The role of the accessory domain of phosphoinositide 3-kinase (PI3-kinase) is unclear. It may be involved in substrate presentation [].; GO: 0004428 inositol or phosphatidylinositol kinase activity; PDB: 1E8W_A 1E8X_A 1E7V_A 1E90_A 1E7U_A 2WXL_A 4AJW_B 2WXQ_A 2WXP_A 2WXM_A ....
Probab=34.60 E-value=74 Score=34.52 Aligned_cols=75 Identities=27% Similarity=0.267 Sum_probs=51.4
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000599 1254 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333 (1400)
Q Consensus 1254 ~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP 1333 (1400)
.||++|.++.-.....+..+...+..+.. ++|..+|..|.+.+.. -.++..|++.| +.++.+++...||.++-
T Consensus 46 aL~~~L~sv~w~~~~~~~~~~~ll~~W~~-~~p~~AL~LL~~~f~~--~~VR~yAv~~L----~~~~d~~l~~yLpQLVQ 118 (184)
T PF00613_consen 46 ALPKLLRSVDWWNPEEVSEAYQLLLQWPP-ISPEDALELLSPNFPD--PFVRQYAVRRL----ESLSDEELLFYLPQLVQ 118 (184)
T ss_dssp GHHHHHTTSTTTSHHHHHHHHHHHHTSHC-TTHHHHHHCTSTT-----HHHHHHHHHHH----CTS-HHHHHHHHHHHHH
T ss_pred HHHHHHhhCCCCchhhHHHHHHHHHcCCC-CCHHHHHHHHHhhccH--HHHHHHHHHHH----HHcCchHHHHHHHHHHH
Confidence 56688887765555656677777777666 7899999999988755 55777777754 56788888888666644
Q ss_pred HH
Q 000599 1334 AL 1335 (1400)
Q Consensus 1334 ~l 1335 (1400)
+|
T Consensus 119 aL 120 (184)
T PF00613_consen 119 AL 120 (184)
T ss_dssp HG
T ss_pred Hh
Confidence 44
No 319
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=34.60 E-value=3.5e+02 Score=32.17 Aligned_cols=108 Identities=17% Similarity=0.095 Sum_probs=71.0
Q ss_pred HHHHhhccccccccHHHHHHHHHHHh-cCCcHHHHHHHHHHHHHHHhhc---ChhhHHHhhhhhccCCchhhHhHHHHHH
Q 000599 1237 NEMLKNQKDVMEDSVEIVIEKLLHVT-KDAVPKVSNEAEHCLTVVLSQY---DPFRCLSVIVPLLVTEDEKTLVTCINCL 1312 (1400)
Q Consensus 1237 ~~l~~~~~~~~~~~~e~~l~~ll~~~-~D~~k~V~~aA~~al~~i~~~~---~p~~~l~~l~~~l~s~~~~~~~~alk~l 1312 (1400)
..|+...+. .+-...++..++-.+ ++.++.+..++..++...+..+ .|..++..+..++..|+-++|..-+..+
T Consensus 8 ~~~L~~l~~--~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~ 85 (339)
T PF12074_consen 8 ASMLSSLPS--SSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCL 85 (339)
T ss_pred HHHHHhCCC--cchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence 344444443 223334444444444 4566677777777777776655 5678999999999999888888889988
Q ss_pred HHHHh----hcCHHHHHhhhhhhHHHHHHHhcCCCHHH
Q 000599 1313 TKLVG----RLSQEELMAQLPSFLPALFEAFGNQSADV 1346 (1400)
Q Consensus 1313 ~~lv~----~~~~~~l~~~l~~liP~l~~~~~d~~seV 1346 (1400)
+..+. .-....+...+|.++..+.++..++-..+
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~~~~ 123 (339)
T PF12074_consen 86 GEALWESPNSDSLKFAEPFLPKLLQSLKEASANPLQSA 123 (339)
T ss_pred HHHHhhccCchHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence 88885 23334455566667777777777776553
No 320
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=34.43 E-value=1.4e+02 Score=45.28 Aligned_cols=113 Identities=16% Similarity=0.146 Sum_probs=92.7
Q ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhh----cC-hh---------hHHHhhhhhccCCchhhHhHHHHHHHHHH
Q 000599 1251 VEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQ----YD-PF---------RCLSVIVPLLVTEDEKTLVTCINCLTKLV 1316 (1400)
Q Consensus 1251 ~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~----~~-p~---------~~l~~l~~~l~s~~~~~~~~alk~l~~lv 1316 (1400)
...++..|++++.....++..++..|+..|-.. ++ ++ .+++-+...+.++.|..+.+.+--|..++
T Consensus 982 ~~i~ldal~~~l~~~~~~~~~~g~~~l~~i~~~~~~~l~~~~~~~~lpi~~~l~~k~~~lCy~~~wy~k~gG~~gI~~l~ 1061 (3550)
T KOG0889|consen 982 PSTFLDALVESLSHENSEMRPAGVRALKVIFSTSTLILGSPERAFKLPMFEYLLEKLCHLCYDSTWYAKDGGVNGIKCLI 1061 (3550)
T ss_pred HHHHHHHHHHHHhccchhhhhhHHHHHHHHHHHHHHhhcCcchhhccchHHHHHHHHHHHhccHhHHHHcCCCceeeeeh
Confidence 446899999999988899999999999877633 11 22 35555566666889998888888888999
Q ss_pred hhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHH----HHHHHHHHHHHHhhh
Q 000599 1317 GRLSQEELMAQLPSFLPALFEAFGNQSADVRK----TVVFCLVDIYIMLGK 1363 (1400)
Q Consensus 1317 ~~~~~~~l~~~l~~liP~l~~~~~d~~seVRk----aAv~~lv~~~~~lge 1363 (1400)
+..+...+....-+++-++..-+-|+.+||-+ .+.+|+..+++++=.
T Consensus 1062 ~~~~~~~l~d~~~d~~~~l~fvl~d~~~e~~~~~~~~~~~~l~~ll~~~~~ 1112 (3550)
T KOG0889|consen 1062 ESMPSLWLLDFQVDILKALFFVLKDTESEVSSLPLDEAKDILMDILRVIFI 1112 (3550)
T ss_pred hhchHHHHHHHHHHHhhhHHHhhcCCccccccchHHHHHHHHHHHHHHHHH
Confidence 99998888888889999999999999999999 889999999887654
No 321
>PF12397 U3snoRNP10: U3 small nucleolar RNA-associated protein 10 ; InterPro: IPR022125 This domain family is found in eukaryotes, and is approximately 120 amino acids in length. The family is found in association with PF08146 from PFAM. This family is the protein associated with U3 snoRNA which is involved in the processing of pre-rRNA.
Probab=34.18 E-value=2.8e+02 Score=27.56 Aligned_cols=78 Identities=10% Similarity=0.026 Sum_probs=51.3
Q ss_pred hhhhhhHHHHHHHhC-CCChhHHHHHHHHHHHHHHHhch-hHHHHHHhhhhhhcCChhHH-HHHHHHHHHHHHhc-cCcc
Q 000599 78 LHFNALVPAVVERLG-DAKQPVRDAARRLLLTLMEVSSP-TIIVERAGSYAWTHRSWRVR-EEFARTVTSAIGLF-SATE 153 (1400)
Q Consensus 78 ~~~~~ilp~LleKLg-D~K~~vre~a~~~L~~l~e~~~p-~~V~e~l~~~~~~~Knpkvr-~~~l~~L~~~l~~f-g~~~ 153 (1400)
.++..++|.+.+-|. ......+-++--.+..++...+. +.+++.+++...++..+.-. .+.+.+|....+.+ +...
T Consensus 2 ~~l~~lLP~l~~~L~~s~~~d~~~a~ymIl~~La~k~~L~~~~l~~l~~~i~~~~~~~~~~~~~l~~L~~l~q~q~~~~~ 81 (121)
T PF12397_consen 2 DILPRLLPFLLKGLKSSSSPDLQAAAYMILSVLASKVPLSDEVLNALMESILKNWTQETVQRQALICLIVLCQSQENVDS 81 (121)
T ss_pred cHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHccccccc
Confidence 356788999999998 55666777777777777766554 46777776655555554444 66777776666665 3333
Q ss_pred hh
Q 000599 154 LT 155 (1400)
Q Consensus 154 l~ 155 (1400)
++
T Consensus 82 lp 83 (121)
T PF12397_consen 82 LP 83 (121)
T ss_pred CC
Confidence 43
No 322
>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []. Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.
Probab=34.08 E-value=3.3e+02 Score=31.15 Aligned_cols=128 Identities=16% Similarity=0.178 Sum_probs=73.6
Q ss_pred ChHHHHHHHHHHHHHHhhc---cc-ccccc--HHHHHHHHHHHhcC--CcHHHHH------HHHHHHHHHHhhcChhh--
Q 000599 1225 DSSVREVALSLINEMLKNQ---KD-VMEDS--VEIVIEKLLHVTKD--AVPKVSN------EAEHCLTVVLSQYDPFR-- 1288 (1400)
Q Consensus 1225 ~~~vR~~aL~~L~~l~~~~---~~-~~~~~--~e~~l~~ll~~~~D--~~k~V~~------aA~~al~~i~~~~~p~~-- 1288 (1400)
++..||.||.-|...-... +. -|+.| +..+|..++..|.- +..-..+ .|-..+..++ .||+.
T Consensus 8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vA--shpetr~ 85 (262)
T PF04078_consen 8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVA--SHPETRM 85 (262)
T ss_dssp SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHH--H-TTTHH
T ss_pred CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHH--cChHHHH
Confidence 4667998876666433322 21 25555 56688888888863 2111122 2222233333 36653
Q ss_pred ------HHHhhhhhccC--Cc---hhhHhHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhcCCCHHHHHHHHHHH
Q 000599 1289 ------CLSVIVPLLVT--ED---EKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFGNQSADVRKTVVFCL 1354 (1400)
Q Consensus 1289 ------~l~~l~~~l~s--~~---~~~~~~alk~l~~lv~~~~~~~l~~~l-~~liP~l~~~~~d~~seVRkaAv~~l 1354 (1400)
+.-+|.|++++ +. .-.|+.++-.++.+++.-.++.+.-.+ .+++|-..+.|+.-+---+..|.|-+
T Consensus 86 ~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~GselSKtvAtfIl 163 (262)
T PF04078_consen 86 PFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSELSKTVATFIL 163 (262)
T ss_dssp HHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HHHHHHHHHHH
T ss_pred HHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHHHHHHHHHHH
Confidence 44456677753 22 347899999999999877766554433 69999999999876544555577763
No 323
>PF11841 DUF3361: Domain of unknown function (DUF3361)
Probab=34.06 E-value=4e+02 Score=28.21 Aligned_cols=120 Identities=11% Similarity=0.222 Sum_probs=79.5
Q ss_pred CCHHHHHHHhhcCCCCC---hhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHHh
Q 000599 1167 PSIPQILHLMCNGNDGS---PTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDD--ADSSVREVALSLINEMLK 1241 (1400)
Q Consensus 1167 ~~i~~ll~~l~~~~~~~---~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d--~~~~vR~~aL~~L~~l~~ 1241 (1400)
+.+..|++.+.+..+.+ .+--.-+|..+.++... +...|+........-+...+.. .+..|.+.||.+|..|+.
T Consensus 11 ~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeH-g~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaILEs~Vl 89 (160)
T PF11841_consen 11 DGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEH-GIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAILESIVL 89 (160)
T ss_pred cCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhc-CcCchhhccHHHHHHHHHHHccccccchHHHHHHHHHHHHHh
Confidence 34666666666654210 12333367777776664 4567865444444445555543 356788899999999998
Q ss_pred hccccccc-cHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChh
Q 000599 1242 NQKDVMED-SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPF 1287 (1400)
Q Consensus 1242 ~~~~~~~~-~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~ 1287 (1400)
+-...... .-|..++.++..+.++..+++..|...++++....+..
T Consensus 90 ~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~ 136 (160)
T PF11841_consen 90 NSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDS 136 (160)
T ss_pred CCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChH
Confidence 65432221 23678888888888888999999999999998776554
No 324
>KOG0891 consensus DNA-dependent protein kinase [Replication, recombination and repair]
Probab=34.00 E-value=9.5e+02 Score=36.30 Aligned_cols=175 Identities=13% Similarity=0.144 Sum_probs=108.2
Q ss_pred hHHHHHHHHHHHHHhcCChhh----HHHHHHHHHHHHHHHhcCCChHHHHHH--HHHHHHHHhhccccccc----cHHHH
Q 000599 1185 TSKHGALQQLIKASVANDHSI----WTKYFNQILTAVLEVLDDADSSVREVA--LSLINEMLKNQKDVMED----SVEIV 1254 (1400)
Q Consensus 1185 ~~r~~al~~L~~~l~~~~~~~----~~~~f~~ll~~Ll~~l~d~~~~vR~~a--L~~L~~l~~~~~~~~~~----~~e~~ 1254 (1400)
..+..|..++..++.....+. ....|..+...+.+...+.+...+..| +.++-..+. .....+ -...-
T Consensus 20 ~~~~~~s~e~~~~~~~~~~~~~~~~~~~f~~~l~~n~~~l~~~~~~~~~~~~~~~~~~~~~~~--~t~~~~~~~s~~~n~ 97 (2341)
T KOG0891|consen 20 SEQAQAARELFNYVTSELRELSAEESARFSNDLNHNIFELVHCLDSNERIGGILAIALLISFE--GTEHDRKNISRLANY 97 (2341)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhcccchhhHHHHHHHHHhh--hcccccchhHhHHHH
Confidence 455667777766655443322 222455555556666555444444222 222222222 111111 13344
Q ss_pred HHHHHHHhcCCcHHHHHHHHHHHHHHHh---hcCh---hhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhh
Q 000599 1255 IEKLLHVTKDAVPKVSNEAEHCLTVVLS---QYDP---FRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1328 (1400)
Q Consensus 1255 l~~ll~~~~D~~k~V~~aA~~al~~i~~---~~~p---~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l 1328 (1400)
++.+++.. | ..+.+.|..++..++. .+.+ +.+++-+..++.......++.|.-.+.++....+ ..+-+++
T Consensus 98 l~~l~~~~-~--~~~~~~a~~~~~l~~~~~~~~~~~~v~~~~k~~~ew~~~~~~~~~~~a~~~~~~l~~~~P-~~~~~~~ 173 (2341)
T KOG0891|consen 98 LRYLLPSN-D--VEVMELAAKSLGLLAAPGKTKTAELVDFEVKRLIEWLGERQEYRRLAAVLIIKELADNVP-TFFYPYV 173 (2341)
T ss_pred HHHhhccC-C--hHHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhhhhhhhhhHHHHHhhhhHhhcCc-HHHHHHH
Confidence 45555444 2 3444444444433332 2333 3477888888866666778889888888885555 8888999
Q ss_pred hhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhc
Q 000599 1329 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAF 1365 (1400)
Q Consensus 1329 ~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~ 1365 (1400)
+.+.-.+..+..|.+.-+|-.|..++.+....++++.
T Consensus 174 ~~~~~~i~~~~~~~~~~i~~~a~~al~~~~~~~~~~~ 210 (2341)
T KOG0891|consen 174 NKFFKNIFAALRDPKPAIRLQACSALHAVLSSLAQRE 210 (2341)
T ss_pred HHHHHHHHHhccCCChhhhHHHHHHHHHHHhhhhhcc
Confidence 9999999999999999999999999999999999844
No 325
>smart00145 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain). PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation.
Probab=33.99 E-value=1.3e+02 Score=32.57 Aligned_cols=75 Identities=23% Similarity=0.212 Sum_probs=54.2
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000599 1254 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333 (1400)
Q Consensus 1254 ~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP 1333 (1400)
.||++|.+..=.....+..+...+..+. .++|..+|..|.+.+. +-.++.-|++.| +..+.++|...||.++-
T Consensus 45 aL~~~L~sv~W~~~~e~~e~~~ll~~W~-~~~~~~aL~LL~~~~~--~~~Vr~yAV~~L----~~~~d~~l~~yLpQLVQ 117 (184)
T smart00145 45 ALPKFLLSVNWSDADEVAQALSLLKKWA-PLDPEDALELLSPKFP--DPFVRAYAVERL----ESASDEELLLYLLQLVQ 117 (184)
T ss_pred HHHHHHhcCCCCCHHHHHHHHHHHHcCC-CCCHHHHHHHhCccCC--CHHHHHHHHHHH----HhCCHHHHHHHHHHHHH
Confidence 4788886665444554556666777664 5788999999998886 456788788754 56788999888777766
Q ss_pred HH
Q 000599 1334 AL 1335 (1400)
Q Consensus 1334 ~l 1335 (1400)
+|
T Consensus 118 aL 119 (184)
T smart00145 118 AL 119 (184)
T ss_pred HH
Confidence 65
No 326
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=33.53 E-value=1e+03 Score=29.67 Aligned_cols=167 Identities=11% Similarity=0.085 Sum_probs=86.7
Q ss_pred ChHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHH
Q 000599 278 SEKELIREFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLS 357 (1400)
Q Consensus 278 s~~dl~~~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La 357 (1400)
++.++...++.+........+=..=...|.-+..++.-+..--+.| ..++..|+..++-. .+...+.+++.-|+
T Consensus 170 ~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~y~~iP~~sl----~~~i~vLCsi~~~~--~l~~~~w~~m~nL~ 243 (464)
T PF11864_consen 170 DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIITYGDIPSESL----SPCIEVLCSIVNSV--SLCKPSWRTMRNLL 243 (464)
T ss_pred CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHcCcCChHHH----HHHHHHHhhHhccc--ccchhHHHHHHHHH
Confidence 3455556666666654322333344777888888887554333343 33444444333221 45555666666654
Q ss_pred HHhhhhHHHHHHHHHHHHHH--Hh--chhhHHHHHHHHHHHHHHH-Hh-------CCCcc--hHHHHHHHhhhCCCHHHH
Q 000599 358 KELLGDFEACAEMFIPVLFK--LV--VITVLVIAESSDNCIKTML-RN-------CKAVR--VLPRIADCAKNDRNAVLR 423 (1400)
Q Consensus 358 ~~Lg~~f~~~a~~~lp~Ll~--~~--~~~kkvi~~sa~~al~~i~-~~-------~~~~r--ll~~i~~~l~~~Kn~~~R 423 (1400)
|.+..+.+-..|-.++. .- .+...++|.+ ...+..++ .. +++.. +++.+..++ +.+++.+=
T Consensus 244 ---~S~~g~~~i~~L~~iL~~~~~~~~~~~~~lRGA-v~~l~~ll~~~~~~~~~~l~~~~~~vl~sl~~al-~~~~~~v~ 318 (464)
T PF11864_consen 244 ---KSHLGHSAIRTLCDILRSPDPQNKRDINVLRGA-VFFLRMLLWGSGEQGYPSLPFSPSSVLPSLLNAL-KSNSPRVD 318 (464)
T ss_pred ---cCccHHHHHHHHHHHHcccCccccccHHHHhhH-HHHHHHHHhccccCCcceecccHHHHHHHHHHHH-hCCCCeeh
Confidence 33333333233333331 00 1223345533 33444433 33 12333 888899888 46677788
Q ss_pred HHHHHHHHHHH-hhCCCcccccccHHHHHHHHHH
Q 000599 424 ARCCEYALLVL-EHWPDAPEIQRSADLYEDLIRC 456 (1400)
Q Consensus 424 ~~~~~~L~~~L-~~~~~~~~l~~~~~~l~~~i~k 456 (1400)
.++...+..+| .++... ......+.+.+++..
T Consensus 319 ~eIl~~i~~ll~~~~~~~-l~~~~W~~~~~i~~~ 351 (464)
T PF11864_consen 319 YEILLLINRLLDGKYGRE-LSEEDWDIILDIIEE 351 (464)
T ss_pred HHHHHHHHHHHhHhhhhh-hcccCchHHHHHHHH
Confidence 88888888888 666542 233344444444433
No 327
>KOG1822 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.45 E-value=6.5e+02 Score=36.49 Aligned_cols=180 Identities=18% Similarity=0.242 Sum_probs=108.5
Q ss_pred HHHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCCh-HHHHHHHHHHHHHHhhcccccc
Q 000599 1170 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADS-SVREVALSLINEMLKNQKDVME 1248 (1400)
Q Consensus 1170 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~-~vR~~aL~~L~~l~~~~~~~~~ 1248 (1400)
+-.++++-...| +--|..-...|.-+-+..+...-.+|++.-+..|+....|++. .|++.+|+.+..++..-+.-+-
T Consensus 918 q~~fdklas~~d--~i~R~ghslalg~lhkyvgs~~s~qhl~t~v~illal~~Ds~~p~VqtwSL~al~~i~~s~~p~~~ 995 (2067)
T KOG1822|consen 918 QNSFDKLASARD--PITRTGHSLALGCLHKYVGSIGSGQHLNTSVSILLALATDSTSPVVQTWSLHALALILDSSGPMFR 995 (2067)
T ss_pred HHHHHHHHhcCC--cHHHHHHHHHHHHHHHhccCCCCchhcccHHHHHHHHhhcCCCchhhhhHHHHHHHHHcCCCceeh
Confidence 344555555543 3455555555555555544444346677656677777788765 7999999999999998888888
Q ss_pred ccHHHHHHHHHHHh---cCCcHHHHHHHHHHHH------HHHhhcChhh---------------HHHhhhhhccCC-chh
Q 000599 1249 DSVEIVIEKLLHVT---KDAVPKVSNEAEHCLT------VVLSQYDPFR---------------CLSVIVPLLVTE-DEK 1303 (1400)
Q Consensus 1249 ~~~e~~l~~ll~~~---~D~~k~V~~aA~~al~------~i~~~~~p~~---------------~l~~l~~~l~s~-~~~ 1303 (1400)
-|++.++--++.+. ++.+.+|...-..|++ .+.+.+.|+- |+-.. -++.+. +.-
T Consensus 996 ~~ve~tlsl~~~lLls~p~~~~ev~q~~~R~~~~~~~~~alittlgpeL~~N~~~d~t~~~rts~la~~-allls~~d~l 1074 (2067)
T KOG1822|consen 996 VLVEPTLSLCLKLLLSVPTSHVEVHQCYNRCFNGDDDEDALITTLGPELGPNGDKDSTSTLRTSCLAAC-ALLLSHSDPL 1074 (2067)
T ss_pred hhHHHHHHHHHHHcCCCCcchhhhhhhhccccccchhHHHHHHhcccccCCCCcccchhHHHHHHHHHH-HHhcCCCccc
Confidence 88888777666644 3456667666666666 6666655521 11111 111222 333
Q ss_pred hHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHH
Q 000599 1304 TLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLV 1355 (1400)
Q Consensus 1304 ~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv 1355 (1400)
.-..+++|+-.+----++ ..++..+++.|...+.-+---.|++++-||-
T Consensus 1075 nqa~ai~clqqlhlFapr---~~n~~~lV~~L~~~l~s~~~i~r~~~~~clr 1123 (2067)
T KOG1822|consen 1075 NQAAAIKCLQQLHLFAPR---HVNLDSLVLQLCSLLSSSYLILRRASFSCLR 1123 (2067)
T ss_pred hHHHHHHHHHHHHhhcch---hccHHHHHHHHHHHhcchhhhhhhhHHhhhh
Confidence 446678887766522232 3366777777777555554445555555543
No 328
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=33.44 E-value=36 Score=32.34 Aligned_cols=79 Identities=15% Similarity=0.134 Sum_probs=55.3
Q ss_pred hhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHH
Q 000599 1303 KTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTI 1382 (1400)
Q Consensus 1303 ~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~~ 1382 (1400)
..+.+++-.|..+|..++ -.+=..+|.++..|....+| ...|++++.+|+-.++..--+.-.-|=..++..|+..|+.
T Consensus 4 ~~rH~~VLGL~Alv~a~P-y~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~D~W~~~~~~Ft~~ql~~l~~ 81 (90)
T PF11919_consen 4 RRRHAAVLGLSALVLAFP-YDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQDTWHEHKKKFTEDQLEDLED 81 (90)
T ss_dssp HHHHHHHHHHHHHHTT-S---SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTSTTHHHHGGG--SSTTGGGSS
T ss_pred HHHHHHHHHHHHHHHHcC-CCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCcccHHHHHHhCCHHHHHHHHc
Confidence 457788888999998877 34445889999999998887 8899999999999999877654344555666666655544
Q ss_pred H
Q 000599 1383 Y 1383 (1400)
Q Consensus 1383 y 1383 (1400)
+
T Consensus 82 ~ 82 (90)
T PF11919_consen 82 V 82 (90)
T ss_dssp -
T ss_pred C
Confidence 3
No 329
>KOG3961 consensus Uncharacterized conserved protein [Function unknown]
Probab=33.41 E-value=1e+02 Score=33.72 Aligned_cols=84 Identities=17% Similarity=0.165 Sum_probs=65.9
Q ss_pred HHHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHH---hhhhhHhh
Q 000599 3 EALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVL---SGEHFKLH 79 (1400)
Q Consensus 3 ~~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~---l~~~~~~~ 79 (1400)
-|+++|...+.-.|.-|-+.+.+++...++++- +-+-.++--|+..+.-.|-.|...+|.+|..++.. .|..+-++
T Consensus 118 ~F~dGL~e~~hpyrf~A~~Gi~DLLl~~g~kil-pVLPqLI~plK~al~trd~ev~~~~Lkvlq~lv~~~~~vG~aLVPf 196 (262)
T KOG3961|consen 118 LFFDGLAETDHPYRFVARQGITDLLLAGGEKIL-PVLPQLILPLKAALVTRDDEVICRTLKVLQQLVVSVGCVGAALVPF 196 (262)
T ss_pred HHhhhhhhcCCCcchhhhhcHHHHHHhcccccc-cccHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhccccchhhhhH
Confidence 478888889999999999999999987765432 23446677778889999999999999999998754 35667778
Q ss_pred hhhhHHHH
Q 000599 80 FNALVPAV 87 (1400)
Q Consensus 80 ~~~ilp~L 87 (1400)
...++|.+
T Consensus 197 YRQlLp~~ 204 (262)
T KOG3961|consen 197 YRQLLPVL 204 (262)
T ss_pred HHHhhhhh
Confidence 88888865
No 330
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=31.70 E-value=3.8e+02 Score=32.42 Aligned_cols=106 Identities=15% Similarity=0.254 Sum_probs=67.4
Q ss_pred HHHHHHHHHHhhc----cccccccHHHHHHHHHHHhc--CCcHHHHHHHHHHHHHHHhhcCh-------hhHHHhhhhhc
Q 000599 1231 VALSLINEMLKNQ----KDVMEDSVEIVIEKLLHVTK--DAVPKVSNEAEHCLTVVLSQYDP-------FRCLSVIVPLL 1297 (1400)
Q Consensus 1231 ~aL~~L~~l~~~~----~~~~~~~~e~~l~~ll~~~~--D~~k~V~~aA~~al~~i~~~~~p-------~~~l~~l~~~l 1297 (1400)
.+|..|.++++.. .....-.++.++|.||+++- |-...++.-|.+.++.|+..+.. +.|-.++.+++
T Consensus 230 ~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~~~~~~l~s~lrsfv 309 (373)
T PF14911_consen 230 SVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSGEPREQLTSVLRSFV 309 (373)
T ss_pred HHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcchHHHHHHHHHHHHH
Confidence 4566666666663 23344568888999998653 43478888999999999977552 34777777777
Q ss_pred cCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000599 1298 VTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGN 1341 (1400)
Q Consensus 1298 ~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d 1341 (1400)
+.-.-.-..--.++|.++. ...++.+... +|.|.+.+.|
T Consensus 310 qk~l~~~t~~~f~~l~~vA-~l~p~lV~~L----ip~i~q~l~~ 348 (373)
T PF14911_consen 310 QKYLAHYTYQYFQFLEKVA-ELDPQLVISL----IPTIRQSLKD 348 (373)
T ss_pred HHHhhhhhHHHHHHHHHHH-HhCHHHHHHH----HHHHHHHHHH
Confidence 5221111122378888888 4555666555 5555555544
No 331
>KOG0889 consensus Histone acetyltransferase SAGA, TRRAP/TRA1 component, PI-3 kinase superfamily [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=31.61 E-value=2.6e+02 Score=42.64 Aligned_cols=94 Identities=19% Similarity=0.389 Sum_probs=68.2
Q ss_pred cccccHHHHHHHHHHHhcCCcHH---------HHHHHHHHHHHHH--hhcChh--hHHHhhhhhccCCchhhHhHHHHHH
Q 000599 1246 VMEDSVEIVIEKLLHVTKDAVPK---------VSNEAEHCLTVVL--SQYDPF--RCLSVIVPLLVTEDEKTLVTCINCL 1312 (1400)
Q Consensus 1246 ~~~~~~e~~l~~ll~~~~D~~k~---------V~~aA~~al~~i~--~~~~p~--~~l~~l~~~l~s~~~~~~~~alk~l 1312 (1400)
.+. |++.++|.+++-..+-.+. .+..+-+.++.+. +++.|. .|++++..+|+.++..--+.|+|.+
T Consensus 43 ~~~-~l~~~ip~~l~~l~~~~~~~~~~~~~~~lR~~~Leil~r~~~~e~~~~~~~~~~~~~~~vl~~dNeen~~l~lkii 121 (3550)
T KOG0889|consen 43 SYL-FLEMLIPLLLNFLENTEKSFSAESPEQELRNLVLEILNRLPHNEVFKPFSQELLKVLMRVLTNDNEENAILCLKII 121 (3550)
T ss_pred HHH-HHHHHHHHHHHHhcccCchhhhcCcHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHhcccchhhhhHHHHH
Confidence 355 8999999999988765444 3334444444333 223333 5999999999999988889999999
Q ss_pred HHHHhhcCHHHHHhhhhhhHHHHHHHhcC
Q 000599 1313 TKLVGRLSQEELMAQLPSFLPALFEAFGN 1341 (1400)
Q Consensus 1313 ~~lv~~~~~~~l~~~l~~liP~l~~~~~d 1341 (1400)
+.+..... ..+..++..++..|++-|.+
T Consensus 122 ~~l~r~f~-~~~~~~v~~fl~~V~~ly~~ 149 (3550)
T KOG0889|consen 122 TDLFRQFK-SLVEQHVQPFLDIVIDLYKN 149 (3550)
T ss_pred HHHHHhhc-hHHHHHHHHHHHHHHHHHHh
Confidence 99997666 78888888777777765543
No 332
>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []. Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.
Probab=31.55 E-value=2.8e+02 Score=29.60 Aligned_cols=26 Identities=23% Similarity=0.252 Sum_probs=11.5
Q ss_pred HHHHHHHhCCCChhHHHHHHHHHHHH
Q 000599 84 VPAVVERLGDAKQPVRDAARRLLLTL 109 (1400)
Q Consensus 84 lp~LleKLgD~K~~vre~a~~~L~~l 109 (1400)
+..|+.-|...+..+|..+.++|..+
T Consensus 160 v~~i~~~L~s~~~~~r~~~leiL~~l 185 (187)
T PF06371_consen 160 VNLIALSLDSPNIKTRKLALEILAAL 185 (187)
T ss_dssp HHHHHHT--TTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence 34444444444455555555555444
No 333
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=31.00 E-value=5.1e+02 Score=33.34 Aligned_cols=97 Identities=14% Similarity=0.189 Sum_probs=50.3
Q ss_pred HHHHHHHHhcCC----cHHHHHHHHHHHHHHHhh--cCh--------hhHHHhhhhhcc----CCchhhHhHHHHHHHHH
Q 000599 1254 VIEKLLHVTKDA----VPKVSNEAEHCLTVVLSQ--YDP--------FRCLSVIVPLLV----TEDEKTLVTCINCLTKL 1315 (1400)
Q Consensus 1254 ~l~~ll~~~~D~----~k~V~~aA~~al~~i~~~--~~p--------~~~l~~l~~~l~----s~~~~~~~~alk~l~~l 1315 (1400)
++-.+++.+.++ ...+...|.-++..++.. ... ..+++.+...|. .++....+.+|+.|+.+
T Consensus 394 ~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~ 473 (574)
T smart00638 394 ILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA 473 (574)
T ss_pred HHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence 344444444432 344555556665555532 111 235555554443 23444566677766654
Q ss_pred HhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHH
Q 000599 1316 VGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIY 1358 (1400)
Q Consensus 1316 v~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~ 1358 (1400)
-... .++.+.|.+. +=.+....+|.+|+.+|-.+-
T Consensus 474 g~~~-------~i~~l~~~l~-~~~~~~~~iR~~Av~Alr~~a 508 (574)
T smart00638 474 GHPS-------SIKVLEPYLE-GAEPLSTFIRLAAILALRNLA 508 (574)
T ss_pred CChh-------HHHHHHHhcC-CCCCCCHHHHHHHHHHHHHHH
Confidence 4211 1222333333 335667889999999987554
No 334
>cd00872 PI3Ka_I Phosphoinositide 3-kinase (PI3K) class I, accessory domain ; PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3K class I prefer phosphoinositol (4,5)-bisphosphate as a substrate. Mammalian members interact with active Ras. They form heterodimers with adapter molecules linking them to different signaling pathways.
Probab=30.73 E-value=1.4e+02 Score=31.91 Aligned_cols=78 Identities=21% Similarity=0.205 Sum_probs=55.5
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhH
Q 000599 1253 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1332 (1400)
Q Consensus 1253 ~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~li 1332 (1400)
..||+++.++.=...+-+..+...+..+ .-++|..++..|.+.+.. -.+|.-|++.|. ..+.++|...||.++
T Consensus 39 ~aL~~~l~sv~w~~~~~v~e~~~lL~~W-~~i~~~~aLeLL~~~f~d--~~VR~yAV~~L~----~~sd~eL~~yL~QLV 111 (171)
T cd00872 39 QALPKLLLSVKWNKRDDVAQMYQLLKRW-PKLKPEQALELLDCNFPD--EHVREFAVRCLE----KLSDDELLQYLLQLV 111 (171)
T ss_pred HHHHHHHhhCCCCCHHHHHHHHHHHHCC-CCCCHHHHHHHCCCcCCC--HHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 3588888887655455555666666665 346888999999988854 556888888655 466799999977776
Q ss_pred HHHHH
Q 000599 1333 PALFE 1337 (1400)
Q Consensus 1333 P~l~~ 1337 (1400)
-+|.=
T Consensus 112 QaLKy 116 (171)
T cd00872 112 QVLKY 116 (171)
T ss_pred HHHHc
Confidence 66554
No 335
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=30.53 E-value=5.3e+02 Score=35.26 Aligned_cols=160 Identities=17% Similarity=0.103 Sum_probs=101.7
Q ss_pred HHHHHHHHHHHHHhhhccCChHhHHHHHHHH-HhhhccCCcchHHHHHHHHHHHHHHhhhhhH--hhhhhhHHHHHHHhC
Q 000599 16 RMAGVERLHQLLEASRKSLTSAEVTSLVDCC-LDLLKDNNFKVSQGALQSLASAAVLSGEHFK--LHFNALVPAVVERLG 92 (1400)
Q Consensus 16 R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l-~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~--~~~~~ilp~LleKLg 92 (1400)
|++.+..+.+..+.....+. .=++.+++.+ .-..+|.-+.+..-.++.|+.+++..+..|- .|+..+ ==-|.
T Consensus 262 rle~Ll~~r~etqe~~d~i~-~mi~~if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYi----GWtLs 336 (1048)
T KOG2011|consen 262 RLESLLMLRKETQEQQDEIE-SMINDIFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYI----GWTLS 336 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHh----cceee
Confidence 67777777776655332110 0133444433 2467899999999999999998887766553 333221 11246
Q ss_pred CCChhHHHHHHHHHHHHHHHhch----h----HHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHH
Q 000599 93 DAKQPVRDAARRLLLTLMEVSSP----T----IIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPI 164 (1400)
Q Consensus 93 D~K~~vre~a~~~L~~l~e~~~p----~----~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l 164 (1400)
|....||-.+..+|..|.+.... . ..-++|++-+-..-+.-||...+..+.... -...++ ..-+-.+
T Consensus 337 Dk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~---~~g~L~--d~di~~V 411 (1048)
T KOG2011|consen 337 DKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADRDRNVSVRAVGLVLCLLLS---SSGLLS--DKDILIV 411 (1048)
T ss_pred cCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhhhcchhHHHHHHHHHHHHh---cccccC--hhHHHHH
Confidence 88889999999999999986222 2 223345553346677888876665554321 112232 3455567
Q ss_pred HHhhCCCChhHHHHHHHHHHH
Q 000599 165 LQMLNDPNPGVREAAILCIEE 185 (1400)
Q Consensus 165 ~~~L~d~n~~VR~aA~~~l~~ 185 (1400)
..++=|.++.|+-+|...+..
T Consensus 412 y~Li~d~~r~~~~aa~~fl~~ 432 (1048)
T KOG2011|consen 412 YSLIYDSNRRVAVAAGEFLYK 432 (1048)
T ss_pred HHHHhccCcchHHHHHHHHHH
Confidence 889999999999999887754
No 336
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=29.29 E-value=1.4e+03 Score=29.66 Aligned_cols=42 Identities=17% Similarity=0.144 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHHHhCCCcchHHHHHHHhhhCCCHHHHHHHHHHH
Q 000599 386 IAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYA 430 (1400)
Q Consensus 386 i~~sa~~al~~i~~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L 430 (1400)
+|-+ |...|++.-+...++..|...+..++|.+++.++..+|
T Consensus 576 vRia---A~~~lm~~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 576 VRIA---AYLILMRCNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp HHHH---HHHHHHHT---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHHH---HHHHHHhcCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 6644 45555555466789999999998899999999887765
No 337
>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]
Probab=29.02 E-value=6.9e+02 Score=32.81 Aligned_cols=158 Identities=15% Similarity=0.114 Sum_probs=89.0
Q ss_pred HHHHHHHhhh-ccCCcchHHHHHHHHHHHHHHhhh---hhHhh---hhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHH-
Q 000599 41 SLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGE---HFKLH---FNALVPAVVERLGDAKQPVRDAARRLLLTLMEV- 112 (1400)
Q Consensus 41 ~lv~~l~~~l-~DsN~~V~~~aL~~l~~l~~~l~~---~~~~~---~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~- 112 (1400)
.+|+.....+ ..+|....+++.-+|..+...... .+... .+..+|.|++.|-...+.|...+..+|..|...
T Consensus 518 ~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~ 597 (717)
T KOG1048|consen 518 SVVRPYLLLLALSKNDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDI 597 (717)
T ss_pred HHHHHHHHHHHHhcchHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCc
Confidence 3444433333 457899999999888888754332 22221 234578999999666677888888899888632
Q ss_pred -----hchhHHHHHHhhhhhhcCC-----hhHHHHHHHHHHHHHH--------hccCcchhhhhhhHHHHHHh-hCCCCh
Q 000599 113 -----SSPTIIVERAGSYAWTHRS-----WRVREEFARTVTSAIG--------LFSATELTLQRAILPPILQM-LNDPNP 173 (1400)
Q Consensus 113 -----~~p~~V~e~l~~~~~~~Kn-----pkvr~~~l~~L~~~l~--------~fg~~~l~l~k~~lp~l~~~-L~d~n~ 173 (1400)
++ ..++-+|+...-.+-+ +.+...+|..|.+++. .|+.+.+ +.++-+ ..-.++
T Consensus 598 rnk~lig-k~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~-------~kL~~I~~s~~S~ 669 (717)
T KOG1048|consen 598 RNKELIG-KYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGI-------PKLRLISKSQHSP 669 (717)
T ss_pred hhhhhhh-cchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccCh-------HHHHHHhcccCCH
Confidence 22 3444455541111222 4455555555555542 1223332 233322 224555
Q ss_pred hHHHHHHHHHHHHHhhhChhHHHhhhcCCCChhhH
Q 000599 174 GVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMV 208 (1400)
Q Consensus 174 ~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l 208 (1400)
.+=++|..+|-.|..+ ..+...+.+++++++.+
T Consensus 670 k~~kaAs~vL~~lW~y--~eLh~~~kk~g~~q~~F 702 (717)
T KOG1048|consen 670 KEFKAASSVLDVLWQY--KELHFKLKKKGFKQQDF 702 (717)
T ss_pred HHHHHHHHHHHHHHHH--HHHhhhHhhhhhHHHHH
Confidence 7777888888887655 44555555445544433
No 338
>KOG4825 consensus Component of synaptic membrane glycine-, glutamate- and thienylcyclohexylpiperidine-binding glycoprotein (43kDa) [Signal transduction mechanisms]
Probab=28.53 E-value=1.2e+03 Score=28.66 Aligned_cols=144 Identities=11% Similarity=0.025 Sum_probs=96.6
Q ss_pred CCCHHHHHHHHHHHHHHHhcCC--CCchhHHHhHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHh-hh-hHH-----H
Q 000599 296 DKDWSVRIAAMQRVEGLVLGGA--ADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKEL-LG-DFE-----A 366 (1400)
Q Consensus 296 ~~dW~~R~~AL~~l~~ll~~~~--~~~~~f~~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~l~~La~~L-g~-~f~-----~ 366 (1400)
...|-.|.+++..+.+.+.... ..|+...+.++.=+.-+...+.|+-..+-...+.+|.+|-..+ .. .|. +
T Consensus 404 cktppdqedallaaikkfgeePiakikedhfenlkagieeiReaIddisaekfqasfelikciiahlikehkfskledah 483 (666)
T KOG4825|consen 404 CKTPPDQEDALLAAIKKFGEEPIAKIKEDHFENLKAGIEEIREAIDDISAEKFQASFELIKCIIAHLIKEHKFSKLEDAH 483 (666)
T ss_pred hcCCccchhhHHHHHHHhccCcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcchhhhhhhhHHH
Confidence 4789999999988877765432 4566555566666666666777777777777777777654333 32 343 4
Q ss_pred HHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhC--CCcchHH-HHHHHhhhCCCHHHHHHHHHHHHHHHhhCCC
Q 000599 367 CAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNC--KAVRVLP-RIADCAKNDRNAVLRARCCEYALLVLEHWPD 439 (1400)
Q Consensus 367 ~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~--~~~rll~-~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~ 439 (1400)
+++.-+++++--.++..+-|+-.|.+.+..+.-.. .-.+++| .++..+..+|.|.+-..-...|.+.+...+.
T Consensus 484 clehhfctlllpngdleariqrtAaefieelAlfkeskekqiipetLtqfldanklphiAkSqggkLarllkdlgk 559 (666)
T KOG4825|consen 484 CLEHHFCTLLLPNGDLEARIQRTAAEFIEELALFKESKEKQIIPETLTQFLDANKLPHIAKSQGGKLARLLKDLGK 559 (666)
T ss_pred HHHHhhhhhhcCCCCHHHHHHHHHHHHHHHHHHHHHhhhhccchHhhhhhcccCcchHHHHHHhHHHHHHHHhcCC
Confidence 56777888888888887778777777777766443 3457777 5666666677777766555556666655543
No 339
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=28.35 E-value=2.7e+02 Score=36.49 Aligned_cols=202 Identities=14% Similarity=0.139 Sum_probs=0.0
Q ss_pred ChhHHHHHHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc----------------
Q 000599 1183 SPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV---------------- 1246 (1400)
Q Consensus 1183 ~~~~r~~al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~---------------- 1246 (1400)
+.+.|++++.+|.+-++.+--......|...+..++.... +|+..-+.--.+.-+++.+.+-+
T Consensus 374 DvdTRRR~a~dlvrgL~~~fe~~vt~v~~~~v~~~l~~y~-~nPS~nWk~kd~aiyL~talaik~~t~~~Gvtstn~lvd 452 (960)
T KOG1992|consen 374 DVDTRRRAAIDLVRGLCKNFEGQVTGVFSSEVQRLLDQYS-KNPSGNWKKKDRAIYLVTALAIKGQTAKHGVTSTNELVD 452 (960)
T ss_pred CcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhc-cCCCccccccchhhhhhHHHHhhcchhhcceeecccccc
Q ss_pred -ccccHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhh---HHHhhhhhccCCchhhHhHHHHHHHHHH------
Q 000599 1247 -MEDSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFR---CLSVIVPLLVTEDEKTLVTCINCLTKLV------ 1316 (1400)
Q Consensus 1247 -~~~~~e~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~---~l~~l~~~l~s~~~~~~~~alk~l~~lv------ 1316 (1400)
.+=|+-.++|.|...-.+.+..+..+|..-+-+.=.+++++. ++|.+..+|.+...-.--.|-..++++.
T Consensus 453 v~~Ff~~~ilp~L~s~~vn~~pilka~aIKy~~~FR~ql~~~~lm~~~p~li~~L~a~s~vvhsYAA~aiEkil~vre~~ 532 (960)
T KOG1992|consen 453 VVDFFANQILPDLLSPNVNEFPILKADAIKYIYTFRNQLGKEHLMALLPRLIRFLEAESRVVHSYAAIAIEKLLTVRENS 532 (960)
T ss_pred HHHHHHHHhhHHhccCccccccchhhcccceeeeecccCChHHHHHHHHHHHHhccCcchHHHHHHHHHHHhccccccCc
Q ss_pred --hhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcchhhhhhcHHHHHHHHHHHH
Q 000599 1317 --GRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQLRLVTIYAN 1385 (1400)
Q Consensus 1317 --~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~p~l~~L~~s~~kll~~yi~ 1385 (1400)
...+++.+.+++-.++-.|.+++.-.++.=-.-..+|+.-+..+..+++-||.+.+-..--..+..--|
T Consensus 533 ~~~if~~~~iap~~~~ll~nLf~a~s~p~~~EneylmKaImRii~i~~~~i~p~~~~~l~~Lteiv~~v~K 603 (960)
T KOG1992|consen 533 NAKIFGAEDIAPFVEILLTNLFKALSLPGKAENEYLMKAIMRIISILQSAIIPHAPELLRQLTEIVEEVSK 603 (960)
T ss_pred cccccchhhcchHHHHHHHHHHHhccCCcccccHHHHHHHHHHHHhCHHhhhhhhhHHHHHHHHHHHHHhc
No 340
>cd00864 PI3Ka Phosphoinositide 3-kinase family, accessory domain (PIK domain); PIK domain is conserved in PI3 and PI4-kinases. Its role is unclear, but it has been suggested to be involved in substrate presentation. Phosphoinositide 3-kinases play an important role in a variety of fundamental cellular processes and can be divided into three main classes, defined by their substrate specificity and domain architecture.
Probab=27.88 E-value=2.4e+02 Score=29.55 Aligned_cols=76 Identities=21% Similarity=0.222 Sum_probs=53.2
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhH
Q 000599 1253 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1332 (1400)
Q Consensus 1253 ~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~li 1332 (1400)
..+|++|....-....-+..+...+..+ ..+.|..+|..|.+.... -.++.-|++.| +..+.+++...+|.++
T Consensus 39 ~~lp~~L~sv~w~~~~~~~e~~~lL~~W-~~~~~~~aL~LL~~~~~~--~~vr~yAv~~L----~~~~~~~l~~ylpQLV 111 (152)
T cd00864 39 KALPKLLKSVNWNDDEEVSELYQLLKWW-APLSPEDALELLSPKYPD--PVVRQYAVRVL----ESASDDELLLYLPQLV 111 (152)
T ss_pred HHHHHHHHHccCCCHHHHHHHHHHHhcC-CCCCHHHHHHHcCCcCCC--HHHHHHHHHHH----HhCCHHHHHHHHHHHH
Confidence 5788888877655455555555555544 457888999999987754 55677777754 4577789988877775
Q ss_pred HHH
Q 000599 1333 PAL 1335 (1400)
Q Consensus 1333 P~l 1335 (1400)
-+|
T Consensus 112 QaL 114 (152)
T cd00864 112 QAL 114 (152)
T ss_pred HHH
Confidence 555
No 341
>PF11935 DUF3453: Domain of unknown function (DUF3453); InterPro: IPR021850 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 239 to 261 amino acids in length. ; PDB: 3ODS_A 3ODR_A 3O2Q_A 3O2T_A 3O2S_A 3GS3_A.
Probab=27.78 E-value=9.2e+02 Score=27.22 Aligned_cols=74 Identities=22% Similarity=0.164 Sum_probs=44.8
Q ss_pred hccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHHHHHHhhhhhhc
Q 000599 50 LKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTH 129 (1400)
Q Consensus 50 l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~ 129 (1400)
++|.+..|...++.+...+. |.+++.+. ...-...+|+.. ..+-+.++. .|.+
T Consensus 2 l~d~d~~v~K~~I~~~~~iy---------------~~~~~~i~---------~~~~~~~~W~~~--~~lK~~Il~-~~~~ 54 (239)
T PF11935_consen 2 LNDEDPAVVKRAIQCSTSIY---------------PLVFRWIC---------VNPSDEQLWESM--NELKDRILS-LWDS 54 (239)
T ss_dssp CT-SSHHHHHHHHHHHHHHH---------------HHHHHHHS-----------HHHHHHHHHH--HHHHHHHHH-GGGS
T ss_pred CCCCcHHHHHHHHHHHHHHH---------------HHHHHHHc---------CCchHHHHHHHH--HHHHHHHHH-HhcC
Confidence 67888888888888887764 33333331 111222333321 234445555 5888
Q ss_pred CChhHHHHHHHHHHHHHHhcc
Q 000599 130 RSWRVREEFARTVTSAIGLFS 150 (1400)
Q Consensus 130 Knpkvr~~~l~~L~~~l~~fg 150 (1400)
.||.||..++.++..+|..+.
T Consensus 55 ~~~gvk~~~iKFle~vIl~qs 75 (239)
T PF11935_consen 55 ENPGVKLAAIKFLERVILVQS 75 (239)
T ss_dssp SSHHHHHHHHHHHHHHHHHTS
T ss_pred CCchHHHHHHHHHHHHHHhcC
Confidence 899999999999888776654
No 342
>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]
Probab=27.75 E-value=9.1e+02 Score=29.62 Aligned_cols=142 Identities=15% Similarity=0.155 Sum_probs=73.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCCh---HhHHHHHHHHHh-hhccCCcchHHHHHHHHHHHHHHh-h-hhhH
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTS---AEVTSLVDCCLD-LLKDNNFKVSQGALQSLASAAVLS-G-EHFK 77 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~---~~~~~lv~~l~~-~l~DsN~~V~~~aL~~l~~l~~~l-~-~~~~ 77 (1400)
++..+.|.|-.--..|.-.+..+.......+.. .-+..+++.+.+ -.-|-|..++.+++.+|..++--. . ..|-
T Consensus 320 ~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~ 399 (604)
T KOG4500|consen 320 LESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFA 399 (604)
T ss_pred HHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhcc
Confidence 345566777777777777777766543222111 114566666654 566889999999999999886221 1 1111
Q ss_pred hhhhhhHHHHHHHhCCCChhHHHHHHHHHHHHHH--------HhchhHHHHHHhhhhhhcCChh-HHHHHHHHHHHHHHh
Q 000599 78 LHFNALVPAVVERLGDAKQPVRDAARRLLLTLME--------VSSPTIIVERAGSYAWTHRSWR-VREEFARTVTSAIGL 148 (1400)
Q Consensus 78 ~~~~~ilp~LleKLgD~K~~vre~a~~~L~~l~e--------~~~p~~V~e~l~~~~~~~Knpk-vr~~~l~~L~~~l~~ 148 (1400)
+ ..+.-.++--+.-.-++|.-.-.-.|.++.. -..-...+|++.. +-+++..- |--|....|...|..
T Consensus 400 ~--aGvteaIL~~lk~~~ppv~fkllgTlrM~~d~qe~~a~eL~kn~~l~ekLv~-Wsks~D~aGv~gESnRll~~lIkH 476 (604)
T KOG4500|consen 400 P--AGVTEAILLQLKLASPPVTFKLLGTLRMIRDSQEYIACELAKNPELFEKLVD-WSKSPDFAGVAGESNRLLLGLIKH 476 (604)
T ss_pred c--cchHHHHHHHHHhcCCcchHHHHHHHHHHHhchHHHHHHHhcCHHHHHHHHH-hhhCCccchhhhhhhHHHHHHHHh
Confidence 1 1122222222333333344443333333321 1112256666665 55555544 555555555444444
No 343
>COG5221 DOP1 Dopey and related predicted leucine zipper transcription factors [Transcription]
Probab=27.71 E-value=2.7e+02 Score=37.39 Aligned_cols=145 Identities=14% Similarity=0.129 Sum_probs=100.3
Q ss_pred HHHhhccCCchHHHHHHHHHHHhhccccCCCchhHHHHHHHHHHHhhC-CchhhhHHHHHHHHHHHhccC-CchhhHHHH
Q 000599 821 LFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLI-DPKELVRQPCSTTLDIVSKTY-SVDSLLPAL 898 (1400)
Q Consensus 821 ~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klg-D~k~~vr~~~~~~L~~~~~~~-~~~~~l~~l 898 (1400)
.+.+.++-+.-+|...++|....-|..+|.+++++...++..|+--|- |..+.. ....++++...++. +++..++.+
T Consensus 109 Gl~pf~~~~si~v~s~~i~li~~yiv~Lg~~vr~~~~~i~isLLpg~e~es~e~~-~l~~hLi~tl~k~L~d~~~fw~~~ 187 (1618)
T COG5221 109 GLFPFSAHCSILVVSSFIDLIERYIVPLGKDVRSYCTSILISLLPGMEFESGEYY-SLRAHLIITLFKSLIDPDVFWSSM 187 (1618)
T ss_pred chhhhhhhhhhHhHHHHHHHHHhheeecCccHHHHHHHHHHHhCCCccccccchH-HHHHHHHHHHHHhcCChhHHHHHH
Confidence 345555555668899999999999999999999999999999999986 455544 43455555555555 777777766
Q ss_pred HHhhccCCCchhHHHHHHHHHHHHhh-hhcCCCCCCCcchHHHHHHhhcccccCCCHHHHHHHHHHHHHHh
Q 000599 899 LRSLDEQRSPKAKLAVIEFAISSLNK-HAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVY 968 (1400)
Q Consensus 899 ~r~l~~~~~~k~k~~~L~~l~~~l~~-~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~~ly 968 (1400)
.-.+ ..+++.|.++|.|++.-=+. -.++.+...-..+..+.+..++.+++|.+.-|.+-...+|...|
T Consensus 188 w~il--l~~~~~R~g~l~~l~reeNNdsh~d~~~rlI~p~~gL~VR~l~a~l~dndiLV~R~~lDlLl~~f 256 (1618)
T COG5221 188 WGIL--LNDERLRTGVLNSLMREENNDSHMDWSERLILPHAGLMVRALCAGLGDNDILVVRNCLDLLLFVF 256 (1618)
T ss_pred HHHH--hcCccccchHHHHHHHHhcCcchhchhhhccCCCcchhHHHHHhhcCCCceeeehhHHHHHHHHc
Confidence 5443 25689999999998751110 01232222223455666777778889977778888888877766
No 344
>PF02854 MIF4G: MIF4G domain; InterPro: IPR003890 This entry represents an MIF4G-like domain. MIF4G domains share a common structure but can differ in sequence. This entry is designated "type 3", and is found in nuclear cap-binding proteins, eIF4G, and UPF2. The MIF4G domain is a structural motif with an ARM (Armadillo) repeat-type fold, consisting of a 2-layer alpha/alpha right-handed superhelix. Proteins usually contain two or more structurally similar MIF4G domains connected by unstructured linkers. MIF4G domains are found in several proteins involved in RNA metabolism, including eIF4G (eukaryotic initiation factor 4-gamma), eIF-2b (translation initiation factor), UPF2 (regulator of nonsense transcripts 2), and nuclear cap-binding proteins (CBP80, CBC1, NCBP1), although the sequence identity between them may be low []. The nuclear cap-binding complex (CBC) is a heterodimer. Human CBC consists of a large CBP80 subunit and a small CBP20 subunit, the latter being critical for cap binding. CBP80 contains three MIF4G domains connected with long linkers, while CBP20 has an RNP (ribonucleoprotein)-type domain that associates with domains 2 and 3 of CBP80 []. The complex binds to 5'-cap of eukaryotic RNA polymerase II transcripts, such as mRNA and U snRNA. The binding is important for several mRNA nuclear maturation steps and for nonsense-mediated decay. It is also essential for nuclear export of U snRNAs in metazoans []. Eukaryotic translation initiation factor 4 gamma (eIF4G) plays a critical role in protein expression, and is at the centre of a complex regulatory network. Together with the cap-binding protein eIF4E, it recruits the small ribosomal subunit to the 5'-end of mRNA and promotes the assembly of a functional translation initiation complex, which scans along the mRNA to the translation start codon. The activity of eIF4G in translation initiation could be regulated through intra- and inter-protein interactions involving the ARM repeats []. In eIF4G, the MIF4G domain binds eIF4A, eIF3, RNA and DNA. Nonsense-mediated mRNA decay (NMD) in eukaryotes involves UPF1, UPF2 and UPF3 to accelerate the decay rate of two unique classes of transcripts: (1) nonsense mRNAs that arise through errors in gene expression, and (2) naturally occurring transcripts that lack coding errors but have built-in features that target them for accelerated decay (error-free mRNAs). NMD can trigger decay during any round of translation and can target CBC-bound or eIF-4E-bound transcripts []. UPF2 contains MIF4G domains, while UPF3 contains an RNP domain []. ; GO: 0005515 protein binding, 0016070 RNA metabolic process; PDB: 3FEY_A 3FEX_A 1H6K_C 1H2V_C 1H2U_A 1H2T_C 1N54_A 1N52_A 1HU3_A 3RK6_A ....
Probab=27.17 E-value=7.8e+02 Score=26.16 Aligned_cols=83 Identities=16% Similarity=0.162 Sum_probs=47.0
Q ss_pred chhhHhHHHHHHHHHHhh--cCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhcc--hhhhhhcHHH
Q 000599 1301 DEKTLVTCINCLTKLVGR--LSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFL--PYLERLNSTQ 1376 (1400)
Q Consensus 1301 ~~~~~~~alk~l~~lv~~--~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lge~~~--p~l~~L~~s~ 1376 (1400)
.++...+.+.+++.|... ++...+...+-.++........ +.--...+.|+..+...+|..+. +.-+..-..-
T Consensus 99 ~~~~~~~~~~fl~eL~~~~vv~~~~i~~~l~~ll~~~~~~~~---~~~~~~~ie~~~~lL~~~G~~l~~~~~~~~~l~~~ 175 (209)
T PF02854_consen 99 SKQRRRGNIRFLAELFNFGVVSEKIIFDILRELLSDGTDECQ---PPPDEENIECLCTLLKTCGKKLENSEESPKALDEI 175 (209)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHTSHHCC---HHTCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_pred HHHHHhhhhhHHHhhHhhccccchhHHHHHHHHHhccccccc---CCCcHhHHHHHHHHHHHHHHHHhcCCCchhHHHHH
Confidence 455667778888888743 3444444444433333222111 33445678888888888898777 4444444444
Q ss_pred HHHHHHHHHh
Q 000599 1377 LRLVTIYANR 1386 (1400)
Q Consensus 1377 ~kll~~yi~r 1386 (1400)
+..++.|+..
T Consensus 176 ~~~~~~~~~~ 185 (209)
T PF02854_consen 176 FERLQKYANS 185 (209)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 4445554443
No 345
>PLN03205 ATR interacting protein; Provisional
Probab=26.51 E-value=4.5e+02 Score=31.53 Aligned_cols=143 Identities=13% Similarity=0.207 Sum_probs=90.2
Q ss_pred HHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhc-c--cccccc----HHHHHHHHHH-HhcCCcHHHHHHHHHHHHHHH
Q 000599 1210 FNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-K--DVMEDS----VEIVIEKLLH-VTKDAVPKVSNEAEHCLTVVL 1281 (1400)
Q Consensus 1210 f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~-~--~~~~~~----~e~~l~~ll~-~~~D~~k~V~~aA~~al~~i~ 1281 (1400)
++.++..|++..+-.+..+.-.+|++|..++++. + .+|+.. -..++....+ +..+....|+-.|...++.|+
T Consensus 321 lqtLlEaLLdLC~v~n~a~V~RsLRvLh~vLqHl~~~~~~~~~~~~~NWvsLfElm~QiAv~~TEE~VrLEAvSIMnVIl 400 (652)
T PLN03205 321 LKSLVEPLLDLCKAETAVLVHRSLRVLHVLLEHICGDEKRFEASWDANWHSLFELMNQIASIRTEEDVKLEALSIMNIIV 400 (652)
T ss_pred HHHHHHHHHHHHhcCchhhhHHHHHHHHHHHHHHhCCcccccccccccHHHHHHHHHHHHhccchhheeeehhhhhHHhh
Confidence 5666668888887666677777888877777765 2 234322 2222322222 456777889999999999999
Q ss_pred hhcChhh---------HHHhhhhhccCC-chhhHhHHHHHHHHHHhhcCHH------------------------HHHhh
Q 000599 1282 SQYDPFR---------CLSVIVPLLVTE-DEKTLVTCINCLTKLVGRLSQE------------------------ELMAQ 1327 (1400)
Q Consensus 1282 ~~~~p~~---------~l~~l~~~l~s~-~~~~~~~alk~l~~lv~~~~~~------------------------~l~~~ 1327 (1400)
...++.. ++.-|..+|+.+ ...+.-.|+.++-.|+ .++.- ....-
T Consensus 401 mssna~~eREkFG~~~VfESiaQLLkkEaGl~VqKealhLLfLLL-NCpklL~iFcSg~~e~~~ad~eNd~~~n~st~k~ 479 (652)
T PLN03205 401 MSTDAYTARESFVSKEVFESISLLLRKEGGLHVRKEAIHLFYLLL-NCPKLYDRFDSLHEEKNSSDTENDSEGNFFALEA 479 (652)
T ss_pred hccchhHHHHHhcchHHHHHHHHHHHHhccchhhHHHHHHHHHHH-cCcHHHHHHhcCCccccccccccccccccccHHH
Confidence 8888742 666677777533 3445566677665555 33320 01123
Q ss_pred hhhhHHHHHHHhc-----CCCHHHHHHHHHH
Q 000599 1328 LPSFLPALFEAFG-----NQSADVRKTVVFC 1353 (1400)
Q Consensus 1328 l~~liP~l~~~~~-----d~~seVRkaAv~~ 1353 (1400)
...++.+|.+|+. -.+=+.||-|+--
T Consensus 480 fSsIlegLAeCiac~~~s~~dIeLck~aiim 510 (652)
T PLN03205 480 FGKIFEGLADCLTSPRKTSEDLELCRNVIMI 510 (652)
T ss_pred HHHHHHHHHHHHcCCCCChhhhHHHHHHHHH
Confidence 5678888888864 3456778877643
No 346
>PF08349 DUF1722: Protein of unknown function (DUF1722); InterPro: IPR013560 This domain of unknown function is found in bacteria and archaea and is homologous to the hypothetical protein ybgA from Escherichia coli.
Probab=25.52 E-value=4.4e+02 Score=26.21 Aligned_cols=97 Identities=9% Similarity=0.099 Sum_probs=61.8
Q ss_pred HHHHHHHHHhcCChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHhcCCcHHH
Q 000599 1190 ALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKDAVPKV 1269 (1400)
Q Consensus 1190 al~~L~~~l~~~~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~D~~k~V 1269 (1400)
...+|++++...+...+.+.+......|.+++..+ ..+..-..+|.+|.+-....+..-=...+..+|+.+.+. +.=
T Consensus 11 ~y~~lg~~va~~~~~~~~~~~~~Y~~~l~~al~~~--~~~~~~~Nvl~Hi~Gyfk~~ls~~EK~~~~~~i~~yr~g-~i~ 87 (117)
T PF08349_consen 11 IYRELGRLVANAGKRPLEEVFEEYEELLMEALSKP--PTRGSHINVLQHIFGYFKKKLSSEEKQHFLDLIEDYREG-KIP 87 (117)
T ss_pred HHHHHHHHHhcCCCCChHHHHHHHHHHHHHHHhcC--CCchhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHcC-Ccc
Confidence 46667777776544445555666666677777642 223345677888887666666666666788888888876 333
Q ss_pred HHHHHHHHHHHHhhcChhhH
Q 000599 1270 SNEAEHCLTVVLSQYDPFRC 1289 (1400)
Q Consensus 1270 ~~aA~~al~~i~~~~~p~~~ 1289 (1400)
..+-...++.++..++-+.+
T Consensus 88 l~~~l~~L~~~~~ry~~~YL 107 (117)
T PF08349_consen 88 LSVPLTLLKHLARRYPDEYL 107 (117)
T ss_pred HHHHHHHHHHHHHHCCCHHH
Confidence 44555677777777665443
No 347
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=25.42 E-value=2.4e+02 Score=34.06 Aligned_cols=80 Identities=18% Similarity=0.237 Sum_probs=48.7
Q ss_pred HHHHHHHhhhccCCcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHh-CCCCh----hHHHHHHHHHHHHHHHhch
Q 000599 41 SLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERL-GDAKQ----PVRDAARRLLLTLMEVSSP 115 (1400)
Q Consensus 41 ~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKL-gD~K~----~vre~a~~~L~~l~e~~~p 115 (1400)
.++.-+...+..++|+|++.||..|..= ............++|.+..-| ..+|. .|...+..+|-.++|. -
T Consensus 341 PLf~qia~c~sS~HFQVAEraL~~wnNe--~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~em--d 416 (457)
T KOG2085|consen 341 PLFRQIARCVSSPHFQVAERALYLWNNE--YIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEM--D 416 (457)
T ss_pred HHHHHHHHHcCChhHHHHHHHHHHHhhH--HHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--C
Confidence 4566667899999999999999887641 111233455566666665554 23333 3444555666666664 2
Q ss_pred hHHHHHHhh
Q 000599 116 TIIVERAGS 124 (1400)
Q Consensus 116 ~~V~e~l~~ 124 (1400)
..+++....
T Consensus 417 ~~LFeec~~ 425 (457)
T KOG2085|consen 417 PKLFEECLA 425 (457)
T ss_pred HHHHHHHHH
Confidence 356666554
No 348
>PF07159 DUF1394: Protein of unknown function (DUF1394); InterPro: IPR009828 This family consists of several hypothetical eukaryotic proteins of around 320 residues in length. The function of this family is unknown.
Probab=25.05 E-value=3.3e+02 Score=31.94 Aligned_cols=113 Identities=10% Similarity=0.120 Sum_probs=63.8
Q ss_pred HHHHHHHHHHHhhhccCCh-HhHHHHHHHHHhhhccCCcc-hHHHHHHHHHHHHHHhhhh--hHhhhhhhHHHHHHHhCC
Q 000599 18 AGVERLHQLLEASRKSLTS-AEVTSLVDCCLDLLKDNNFK-VSQGALQSLASAAVLSGEH--FKLHFNALVPAVVERLGD 93 (1400)
Q Consensus 18 ~ale~L~~~l~~~~~~~~~-~~~~~lv~~l~~~l~DsN~~-V~~~aL~~l~~l~~~l~~~--~~~~~~~ilp~LleKLgD 93 (1400)
+.++.+..++++....+.. ..+..--+.+...+.+.|-. +.+++.++|.-++..+..+ |...+..++|.++..|..
T Consensus 18 ev~~~v~~VL~~~~~iL~~L~~Yrgas~~Ir~Ai~~Ps~ee~qe~aw~al~P~V~kLk~Fy~Fs~~le~~~~~ll~~L~~ 97 (303)
T PF07159_consen 18 EVYNEVNEVLEEGEQILQDLYTYRGASREIRQAISNPSDEELQEKAWEALEPLVKKLKEFYEFSQELEKVFPKLLKELCS 97 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCchHHHHHHHcCCChHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 4666666666654332110 01111112233345555544 9999999999999888875 567889999999999864
Q ss_pred CChh-HH--HHHHHHHHHHHHHhchhHHHHHHhhhhhhcCChhHH
Q 000599 94 AKQP-VR--DAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVR 135 (1400)
Q Consensus 94 ~K~~-vr--e~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr 135 (1400)
.+.. .. +.-+..+..|++....-..++ .++.+||-+.
T Consensus 98 ~~~~~~~~l~~~qAL~kq~a~iL~f~l~fD-----~LK~~npaIq 137 (303)
T PF07159_consen 98 GPLKPKEHLEQKQALAKQFAEILDFVLKFD-----ELKMMNPAIQ 137 (303)
T ss_pred CCCCchhhhHHhHHHHHHHHHHHHHHhhhh-----hhhccChhhh
Confidence 3221 11 223345556666543323333 3455666443
No 349
>PF04869 Uso1_p115_head: Uso1 / p115 like vesicle tethering protein, head region; InterPro: IPR006953 This domain identifies a group of proteins, which are described as: General vesicular transport factor, Transcytosis associated protein (TAP) or Vesicle docking protein, this myosin-shaped molecule consists of an N-terminal globular head region, a coiled-coil tail which mediates dimerisation, and a short C-terminal acidic region []. p115 tethers COP1 vesicles to the Golgi by binding the coiled coil proteins giantin (on the vesicles) and GM130 (on the Golgi), via its C-terminal acidic region. It is required for intercisternal transport in the Golgi stack. This domain is found in the head region. The head region is highly conserved, but its function is unknown. It does not seem to be essential for vesicle tethering []. The N-terminal part of the head region contains context-detected Armadillo/beta-catenin-like repeats.; GO: 0006886 intracellular protein transport, 0048280 vesicle fusion with Golgi apparatus, 0000139 Golgi membrane, 0005737 cytoplasm; PDB: 2W3C_A 3GRL_A 3GQ2_A.
Probab=24.84 E-value=3e+02 Score=32.53 Aligned_cols=166 Identities=10% Similarity=0.050 Sum_probs=76.3
Q ss_pred CHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCc-chHHHHHHHHHHHHHH-hhhhhHhhhhhhHHHHHH
Q 000599 12 DTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNF-KVSQGALQSLASAAVL-SGEHFKLHFNALVPAVVE 89 (1400)
Q Consensus 12 ~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~-~V~~~aL~~l~~l~~~-l~~~~~~~~~~ilp~Lle 89 (1400)
....|.+|...++.++.++... -..++..+.+.-.+.+. ..... ++..+..- ......+|..-+.-.++-
T Consensus 51 ~f~lR~AA~~c~kay~~~N~~~-----q~~~l~~~i~~~~~~~~~~~~~n---l~~~Ll~~~~~~~~dpy~~wfAa~il~ 122 (312)
T PF04869_consen 51 PFDLRCAALYCFKAYFYNNEEG-----QTAFLSTLIPSYASGNSDDPIAN---LLTALLDYDSDLSLDPYRCWFAAVILM 122 (312)
T ss_dssp -HHHHHHHHHHHHHHHTT-HHH-----HHHHHHTTSSTT--SS--SSSS----HHHHHT------SS-HHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHhcCHHH-----HHHHHHHHhccCCCCcccchhhH---HHHHHHHhhccccCCHHHHHHHHHHHH
Confidence 6899999999999999764321 12455544433333331 11111 22222210 011223433333333333
Q ss_pred HhCCCChhHHHHHHHHH-HHHHHHhc----hhHHHHHHhhhhhh-cCChhHHHHHHHHHHH-------HHHhccCcchhh
Q 000599 90 RLGDAKQPVRDAARRLL-LTLMEVSS----PTIIVERAGSYAWT-HRSWRVREEFARTVTS-------AIGLFSATELTL 156 (1400)
Q Consensus 90 KLgD~K~~vre~a~~~L-~~l~e~~~----p~~V~e~l~~~~~~-~Knpkvr~~~l~~L~~-------~l~~fg~~~l~l 156 (1400)
-+-..++.-|+.+..+- ..--+-.. .+.|.+.++. .+. ...++++.+.|..|.. +++.|=..
T Consensus 123 hll~dn~~~Ke~al~V~~~~~~~ge~~vtliq~v~~lL~~-~l~~~~d~ri~igyL~LL~~WL~e~p~AV~~FL~~---- 197 (312)
T PF04869_consen 123 HLLRDNPEAKEQALRVTEGDESSGEEPVTLIQTVSELLIA-SLRRNSDPRIQIGYLMLLIVWLFECPDAVNDFLSE---- 197 (312)
T ss_dssp HHHTT-HHHHHHHTT--EE--STTS--EEHHHHHHHHTTT-----T--HHHHHHHHHHHHHHHTT-HHHHHHHHCS----
T ss_pred HHHhcCHHHHHHHHcccCCCCCCCCCcccHHHHHHHHHHh-hhhcCCchhHHHHHHHHHHHHHhCCHHHHHHHHcC----
Confidence 43233433344444331 00000111 2334444443 344 7789999987554433 45555222
Q ss_pred hhhhHHHHHHh---hCCCChhHHHHHHHHHHHHHhhhC
Q 000599 157 QRAILPPILQM---LNDPNPGVREAAILCIEEMYTYAG 191 (1400)
Q Consensus 157 ~k~~lp~l~~~---L~d~n~~VR~aA~~~l~~l~~~~G 191 (1400)
...++.|+.. -++.+.-|+--+.-+|+.+|.+-.
T Consensus 198 -~s~l~~Li~~~~~~~~~~~~VqGL~A~LLGicyef~~ 234 (312)
T PF04869_consen 198 -GSNLQSLIEFSNQSSSEDVLVQGLCAFLLGICYEFST 234 (312)
T ss_dssp -TTHHHHHHHHHS--TCCCHHHHHHHHHHHHHHHHT-S
T ss_pred -cchHHHHHHHhhcCCCCcchHHHHHHHHHHHHHHhcC
Confidence 2344555543 456788899999999999998765
No 350
>smart00582 RPR domain present in proteins, which are involved in regulation of nuclear pre-mRNA.
Probab=24.67 E-value=2.8e+02 Score=27.42 Aligned_cols=80 Identities=14% Similarity=0.099 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhcccc-ccccHHHHHHH---HHH-HhcCCcHHHHHHHHHHHHHHHh--h
Q 000599 1211 NQILTAVLEVLDDADSSVREVALSLINEMLKNQKDV-MEDSVEIVIEK---LLH-VTKDAVPKVSNEAEHCLTVVLS--Q 1283 (1400)
Q Consensus 1211 ~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~~-~~~~~e~~l~~---ll~-~~~D~~k~V~~aA~~al~~i~~--~ 1283 (1400)
..|...+.+.+....+.-+...|.++.+|+++-..+ ...|...+.+. ++. .+.....+++......++.|-+ .
T Consensus 31 ~~Iv~~i~~~~~~~~~~~kL~~LYlindIl~n~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~ki~kll~iW~~~~i 110 (121)
T smart00582 31 KEIVELWEKYIKKAPPPRKLPLLYLLDSIVQNSKRKYGSEFGDELGPVFQDALRDVLGAANDETKKKIRRLLNIWEERGI 110 (121)
T ss_pred HHHHHHHHHHHHhCCccceehhHHhHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcCCC
Confidence 345555666665544445666788899999986544 22233333333 332 2223335678888888888886 5
Q ss_pred cChhhHH
Q 000599 1284 YDPFRCL 1290 (1400)
Q Consensus 1284 ~~p~~~l 1290 (1400)
++++-+-
T Consensus 111 F~~~~i~ 117 (121)
T smart00582 111 FPPSVLR 117 (121)
T ss_pred CCHHHHH
Confidence 6665443
No 351
>PF08568 Kinetochor_Ybp2: Uncharacterised protein family, YAP/Alf4/glomulin; InterPro: IPR013877 This is a family of proteins integrally involved in the central kinetochore. In baker's yeast the protein seems to be part of a macromolecular kinetochore complex and appears to contribute to the proper associations among the central kinetochore sub-complexes and the kinetochore-specific nucleosome. The family is localised in such a way as to bridge the COMA and Ndc80 complexes onto the centromeric nucleosome []. This family also includes aberrant root formation protein 4 and glomulin. Aberrant root formation protein 4 (Alf4) of Arabidopsis thaliana (Mouse-ear cress) is required for the initiation of lateral roots independent from auxin signalling. It may also function in maintaining the pericycle in the mitotically competent state needed for lateral root formation []. Glomulin (FAP68) is essential for normal development of the vasculature and may represent a naturally occurring ligand of the immunophilins FKBP59 and FKBP12 [, ].
Probab=24.61 E-value=1.4e+03 Score=29.95 Aligned_cols=101 Identities=16% Similarity=0.193 Sum_probs=54.9
Q ss_pred HHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCC--cchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHHHHhCCCC--
Q 000599 20 VERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNN--FKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAK-- 95 (1400)
Q Consensus 20 le~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN--~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~LleKLgD~K-- 95 (1400)
.+.+...++...+.-|.-.+..+++.+ +.|.| .......+..|..+.+. .+.+-..++-=+|.++=++-..+
T Consensus 4 ~e~l~~~~e~~~~~~D~~s~~t~l~~~---~~~~~~~~~~~~~~l~~L~~~L~~-n~~l~~~igWDL~~~l~~~~~~~~~ 79 (633)
T PF08568_consen 4 CENLEPLFEEAPPAEDYLSYLTILDIY---LEDVNYSNEEKEEFLPELLEILQD-NQELTYEIGWDLPKLLLPFLPSSEI 79 (633)
T ss_pred HHHHHHHHhcccCCcCHHHHHHHHHHH---HhccccchhhHHHHHHHHHHHHhh-CHHHHHHccccCHHHHHHHhhhhhc
Confidence 345555565533333333333444433 34333 22334445555555533 33333444433333333433222
Q ss_pred hhHHHHHHHHHHHHHHHhchhHHHHHHhh
Q 000599 96 QPVRDAARRLLLTLMEVSSPTIIVERAGS 124 (1400)
Q Consensus 96 ~~vre~a~~~L~~l~e~~~p~~V~e~l~~ 124 (1400)
..++..+.++|..+++.++|.+++-.+++
T Consensus 80 ~~~~~~~~~~l~~la~~gnPkE~~l~~~E 108 (633)
T PF08568_consen 80 SPCVDCCMKCLEELARLGNPKELLLKVCE 108 (633)
T ss_pred chHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 46899999999999999999988777765
No 352
>smart00543 MIF4G Middle domain of eukaryotic initiation factor 4G (eIF4G). Also occurs in NMD2p and CBP80. The domain is rich in alpha-helices and may contain multiple alpha-helical repeats. In eIF4G, this domain binds eIF4A, eIF3, RNA and DNA. Ponting (TiBS) "Novel eIF4G domain homologues (in press)
Probab=24.60 E-value=8.6e+02 Score=25.80 Aligned_cols=81 Identities=20% Similarity=0.333 Sum_probs=48.6
Q ss_pred CChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCC---ChhHHHHHHHHHHHHHhhhChhHHHhhhcCCCChh
Q 000599 130 RSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP---NPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNS 206 (1400)
Q Consensus 130 Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~---n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~ 206 (1400)
..++-..+++.+|..... ||. ++. +.++..+..++++. .+.-.+-..++++.+..++|..+.. ...+.
T Consensus 91 ~~~~~~~~~i~fl~eL~~-~~~--i~~-~~i~~~l~~ll~~~~~~~~~~~~~~ve~l~~lL~~~G~~l~~-----~~~~~ 161 (200)
T smart00543 91 SDKQRRLGLVRFLGELYN-FQV--LTS-KIILELLKELLNDLTKLDPPRSDFSVECLLSLLPTCGKDLER-----EKSPK 161 (200)
T ss_pred HhhhhHHhHHHHHHHHHH-ccc--CcH-HHHHHHHHHHHhccCCCCCCCcHHHHHHHHHHHHHhhHHHcC-----cccHH
Confidence 345555667777765432 333 332 33444444444443 3333467899999999999998764 23455
Q ss_pred hHHHHHHHHHhhC
Q 000599 207 MVKDINARLERIQ 219 (1400)
Q Consensus 207 ~l~~i~~~~~~~~ 219 (1400)
.++.+.+.+....
T Consensus 162 ~~~~~l~~l~~~~ 174 (200)
T smart00543 162 LLDEILERLQDYL 174 (200)
T ss_pred HHHHHHHHHHHHH
Confidence 6777877777654
No 353
>smart00273 ENTH Epsin N-terminal homology (ENTH) domain.
Probab=24.19 E-value=3.7e+02 Score=26.98 Aligned_cols=39 Identities=21% Similarity=0.401 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhccCC-chHHHHHHHHHHHhhccccCCCc
Q 000599 814 NFEKVMKLFFQHLDDP-HHKVAQAALSTLADIIPSCRKPF 852 (1400)
Q Consensus 814 ~l~~l~~~~~~~l~Ds-n~kV~~~~Le~L~~li~~~~~~l 852 (1400)
.+..+++.+.++|.|+ |..|+.++|-+|..++..-.+.+
T Consensus 36 ~~~~i~~~l~~Rl~~~~~w~~v~KsL~llh~ll~~G~~~~ 75 (127)
T smart00273 36 SFAEIMAVLWRRLNDTKNWRVVYKALILLHYLLRNGSPRV 75 (127)
T ss_pred hHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHhcCCHHH
Confidence 5668899999999998 99999999999999998755544
No 354
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=23.98 E-value=9e+02 Score=25.83 Aligned_cols=71 Identities=17% Similarity=0.029 Sum_probs=52.3
Q ss_pred hhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCCChhHHHHHHHHHHHHHhhhChhHHHhhhc
Q 000599 125 YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHR 200 (1400)
Q Consensus 125 ~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~ 200 (1400)
....+.|.-+|--++..+...+.. ...+ ..+++.+-.++.|...-||.+...+|.++++...+.+..++.+
T Consensus 112 ~w~~s~~~~~rR~~~~~~~~~~~~----~~~~-~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~~~~~v~~~l~~ 182 (197)
T cd06561 112 EWAKSENEWVRRAAIVLLLRLIKK----ETDF-DLLLEIIERLLHDEEYFVQKAVGWALREYGKKDPERVIAFLEK 182 (197)
T ss_pred HHHhCCcHHHHHHHHHHHHHHHHh----cccH-HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhCHHHHHHHHHH
Confidence 367777766655554444443333 1223 6788999999999999999999999999999977778888763
No 355
>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.91 E-value=1.4e+03 Score=28.39 Aligned_cols=76 Identities=18% Similarity=0.184 Sum_probs=43.9
Q ss_pred cChhhHHHhhhhhccCC---chhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Q 000599 1284 YDPFRCLSVIVPLLVTE---DEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIM 1360 (1400)
Q Consensus 1284 ~~p~~~l~~l~~~l~s~---~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~ 1360 (1400)
+.|..+++.+..+++++ +.-+-..-.=++-.|..+..++.+.. =..+-..+++.|||.+.+|||-+-+|+--+-.+
T Consensus 586 la~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He~tr~~mik-et~~~AylIDLMHDkN~eiRkVCDn~LdIiae~ 664 (791)
T KOG1222|consen 586 LAPAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHELTRRLMIK-ETALGAYLIDLMHDKNAEIRKVCDNALDIIAEH 664 (791)
T ss_pred hCccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHHh-hccchHHHHHHHhcccHHHHHHHHHHHHHHHHh
Confidence 55667888888888643 22122211222222332223222211 123445789999999999999999998755443
No 356
>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]
Probab=23.80 E-value=5.7e+02 Score=34.68 Aligned_cols=50 Identities=18% Similarity=0.303 Sum_probs=29.3
Q ss_pred HHHhhhhhcc-CCchhhHhHHHHHHHHHHhhcCHHHHHhhh-hhhHHHHHHHhc
Q 000599 1289 CLSVIVPLLV-TEDEKTLVTCINCLTKLVGRLSQEELMAQL-PSFLPALFEAFG 1340 (1400)
Q Consensus 1289 ~l~~l~~~l~-s~~~~~~~~alk~l~~lv~~~~~~~l~~~l-~~liP~l~~~~~ 1340 (1400)
|+..+.+.++ .-+| .-.|++.|..++.+-.-+.+..-| -.++|.|.+.++
T Consensus 2089 ~i~~~m~~mkK~~~~--~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd 2140 (2235)
T KOG1789|consen 2089 CIDGIMKSMKKQPSL--MGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLD 2140 (2235)
T ss_pred cchhhHHHHHhcchH--HHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhc
Confidence 4444445553 2345 335788888888766544444444 367887777664
No 357
>PF14663 RasGEF_N_2: Rapamycin-insensitive companion of mTOR RasGEF_N domain
Probab=23.79 E-value=2.4e+02 Score=28.05 Aligned_cols=31 Identities=29% Similarity=0.375 Sum_probs=27.5
Q ss_pred HHHHHHhhccCCchHHHHHHHHHHHhhcccc
Q 000599 818 VMKLFFQHLDDPHHKVAQAALSTLADIIPSC 848 (1400)
Q Consensus 818 l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~ 848 (1400)
.++.++..|.|++.+|+..|+++|-+.....
T Consensus 9 ~i~lLv~QL~D~~~~V~~~A~~iL~e~c~~~ 39 (115)
T PF14663_consen 9 GIELLVTQLYDPSPEVVAAALEILEEACEDK 39 (115)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHhch
Confidence 4688899999999999999999999887764
No 358
>smart00185 ARM Armadillo/beta-catenin-like repeats. Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.
Probab=23.42 E-value=1.1e+02 Score=23.26 Aligned_cols=27 Identities=30% Similarity=0.480 Sum_probs=23.2
Q ss_pred hHHHHHHHhcCCCHHHHHHHHHHHHHH
Q 000599 1331 FLPALFEAFGNQSADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1331 liP~l~~~~~d~~seVRkaAv~~lv~~ 1357 (1400)
.+|.|.+.+.+.+.++++.|..++-.+
T Consensus 13 ~i~~L~~ll~~~~~~i~~~a~~aL~nl 39 (41)
T smart00185 13 GLPALVELLKSEDEEVVKEAAWALSNL 39 (41)
T ss_pred CHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence 588888888899999999999987654
No 359
>KOG0931 consensus Predicted guanine nucleotide exchange factor, contains Sec7 domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=23.22 E-value=5.4e+02 Score=31.41 Aligned_cols=113 Identities=15% Similarity=0.102 Sum_probs=72.8
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHH-----HHHHh--h---ccccCCCchhHHHH
Q 000599 789 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAAL-----STLAD--I---IPSCRKPFESYMER 858 (1400)
Q Consensus 789 ~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~L-----e~L~~--l---i~~~~~~l~~~l~~ 858 (1400)
|=-+||..+|..+.-..+ ++..++|++.|..+.+-.|.+|++.|= -+|.- + -..|.+.+++.=+.
T Consensus 276 elDeALRKfqahirvqgE-----AqKveRlIeAFsqrYc~cNP~~v~qfrnpDTIfiLaFAIIlLNTDmySPnVKperkM 350 (627)
T KOG0931|consen 276 ELDEALRKFQAHIRVQGE-----AQKVERLIEAFSQRYCKCNPKVVRQFRNPDTIFILAFAIILLNTDMYSPNVKPERKM 350 (627)
T ss_pred hHHHHHHHHHHHeecccH-----HHHHHHHHHHHHHHHhccCHHHHhhccCCCeehHHHHHHHHhcccccCCCCCHHHhh
Confidence 445666777776644332 257889999999999999999987542 11221 1 23456778888899
Q ss_pred HHHHHHHhh-C-Cch-hhhHHHHHHHHHHHhc-----cCCchhhHHHHHHhhccCC
Q 000599 859 ILPHVFSRL-I-DPK-ELVRQPCSTTLDIVSK-----TYSVDSLLPALLRSLDEQR 906 (1400)
Q Consensus 859 ll~~L~~kl-g-D~k-~~vr~~~~~~L~~~~~-----~~~~~~~l~~l~r~l~~~~ 906 (1400)
.|-..+++| | |.- +-=|+-..-+-+.|.. .-+-..+++++.|.|+.-+
T Consensus 351 ~leDFikNLRGvDnGeDIpRell~GIYeRIqk~ELktndDHVsqVqkVer~IVGkk 406 (627)
T KOG0931|consen 351 KLEDFIKNLRGVDNGEDIPRELLVGIYERIQKRELKTNDDHVSQVQKVERAIVGKK 406 (627)
T ss_pred hHHHHHHhccCCCCcccCcHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHhcCC
Confidence 999999999 5 543 2224434444444431 2345567778888887644
No 360
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=22.81 E-value=1.1e+03 Score=30.37 Aligned_cols=106 Identities=14% Similarity=-0.031 Sum_probs=73.5
Q ss_pred HHHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhccCCcchHHHHHHHHHHHHHHhh--hhhHhhhh
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG--EHFKLHFN 81 (1400)
Q Consensus 4 ~l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~~~l~--~~~~~~~~ 81 (1400)
|+-++.+.+-..|...+..|...++..+.. .-. ..+++...-.|.|.|..|......++..|+.+-. +.++..+.
T Consensus 280 fvsRy~Dv~d~IRv~c~~~L~dwi~lvP~y--f~k-~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 280 FVSRYIDVDDVIRVLCSMSLRDWIGLVPDY--FRK-ILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred HhhhccchhHHHHHHHHHHHHHHHhcchHH--HHh-hhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 566777888889999999998888653211 000 0122222346789999999999999999987632 23445555
Q ss_pred hhHHHHHHHh-CCCChhHHHHHHHHHHHHHHHh
Q 000599 82 ALVPAVVERL-GDAKQPVRDAARRLLLTLMEVS 113 (1400)
Q Consensus 82 ~ilp~LleKL-gD~K~~vre~a~~~L~~l~e~~ 113 (1400)
-+-.-++|-+ -|..- ||-.+.+.|..+....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~lr~lg 388 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYLRILG 388 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHHHHhc
Confidence 5666666665 56665 9999999999998753
No 361
>cd00869 PI3Ka_II Phosphoinositide 3-kinase (PI3K) class II, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, class II PI3-kinases phosphorylate phosphoinositol (PtdIns), PtdIns(4)-phosphate, but not PtdIns(4,5)-bisphosphate. They are larger, having a C2 domain at the C-terminus.
Probab=22.63 E-value=2e+02 Score=30.78 Aligned_cols=77 Identities=19% Similarity=0.239 Sum_probs=50.8
Q ss_pred HHHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhH
Q 000599 1253 IVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFL 1332 (1400)
Q Consensus 1253 ~~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~li 1332 (1400)
..||++|....+-...-+..+...+..+. -+.|...+..|.+.+.+ -.+|.-|++.|. ..+.++|...||.++
T Consensus 39 ~aLp~~L~s~~~w~~~~~~e~~~LL~~W~-p~~p~~ALeLL~~~f~d--~~VR~yAV~~L~----~~~ddeL~~yLpQLV 111 (169)
T cd00869 39 NALPLVLASAPSWDWANLMDVYQLLHQWA-PLRPLIALELLLPKFPD--QEVRAHAVQWLA----RLSNDELLDYLPQLV 111 (169)
T ss_pred HHHHHHHHhcccCcHHHHHHHHHHHhCCC-CCCHHHHHHHcCCcCCC--hHHHHHHHHHHH----hCCHHHHHHHHHHHH
Confidence 35888888765443333334555555553 47888899999998865 357778888654 566788888866665
Q ss_pred HHHH
Q 000599 1333 PALF 1336 (1400)
Q Consensus 1333 P~l~ 1336 (1400)
-+|.
T Consensus 112 QaLk 115 (169)
T cd00869 112 QALK 115 (169)
T ss_pred HHHH
Confidence 4443
No 362
>PF12030 DUF3517: Domain of unknown function (DUF3517); InterPro: IPR021905 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is about 340 amino acids in length. This domain is found associated with PF00443 from PFAM.
Probab=22.00 E-value=1.4e+03 Score=27.33 Aligned_cols=90 Identities=18% Similarity=0.275 Sum_probs=46.4
Q ss_pred ChhhHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHhhccccCC-CchhHHHHHHHHHH
Q 000599 786 DWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK-PFESYMERILPHVF 864 (1400)
Q Consensus 786 ~W~~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~li~~~~~-~l~~~l~~ll~~L~ 864 (1400)
.| .|..++..|.++|+.+... + -...|+.+|+.. ++.-.+....+.+|.+=|..-.. ...|||.. .-+|
T Consensus 108 ~~-~~~~~~~fl~KlL~i~q~~--~---at~~Ii~~L~~~--~~~~~l~~~i~~tL~~gi~~~p~~~~~PfLrA--alvf 177 (337)
T PF12030_consen 108 PW-DRSNASIFLDKLLEIDQNP--E---ATHSIIKRLLRA--SPDAGLQDSIFKTLEEGIRGQPAQLCDPFLRA--ALVF 177 (337)
T ss_pred hc-CCccccHHHHHHHhccCCh--H---HHHHHHHHHHhC--CcccchHHHHHHHHHcccccCchhhhhHHHHH--HHHH
Confidence 36 5667899999999876552 1 222444444433 33334555556666666655432 23555552 2233
Q ss_pred HhhCCchhhhHHHHHHHHHHH
Q 000599 865 SRLIDPKELVRQPCSTTLDIV 885 (1400)
Q Consensus 865 ~klgD~k~~vr~~~~~~L~~~ 885 (1400)
-...-.-+.|+.-++.+...+
T Consensus 178 ce~s~~~~~v~~li~~Va~~~ 198 (337)
T PF12030_consen 178 CERSPDADRVQDLIRHVAKQV 198 (337)
T ss_pred HHcCCCHHHHHHHHHHHHHHh
Confidence 333444444555444444433
No 363
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=21.94 E-value=1.3e+03 Score=26.80 Aligned_cols=166 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhh-ccCCchHHHHHHHHHHHhhccccCCC-------chhHHHHHH
Q 000599 789 ARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQH-LDDPHHKVAQAALSTLADIIPSCRKP-------FESYMERIL 860 (1400)
Q Consensus 789 ~R~~gl~~L~~~l~~~~~~~~~v~~~l~~l~~~~~~~-l~Dsn~kV~~~~Le~L~~li~~~~~~-------l~~~l~~ll 860 (1400)
+|..-+.-+-.+...|.- +...+++++... -.+.+.-|...+++.|..+...+... |+.|+..++
T Consensus 37 ~R~~ll~D~~al~~~g~~-------~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~ 109 (324)
T PF11838_consen 37 DRAQLLDDLFALARAGRL-------SYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLL 109 (324)
T ss_dssp HHHHHHHHHHHHHHTTSS--------HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCC-------CHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Q ss_pred HHHHHhhC-CchhhhHHHHHHHHHHHhccCCchhhHHHHHHhhccCCCchhHHHHHHHHHHHHhhhhcCCCCCCCcchHH
Q 000599 861 PHVFSRLI-DPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLGILK 939 (1400)
Q Consensus 861 ~~L~~klg-D~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~~~~ 939 (1400)
..+++++| +..++ +.+.-..+-..++..+. ..+.....+.+.+...+.. ..+.. ..-...++
T Consensus 110 ~~~~~~l~~~~~~~-------------~~~~~~~lr~~~~~~a~--~~~~~~~~a~~~~~~~~~~-~~~~~-~~i~~dlr 172 (324)
T PF11838_consen 110 EPLYERLGWDPRPG-------------EDHNDRLLRALLLSLAC--GDPECVAEARELFKAWLDG-NDSPE-SSIPPDLR 172 (324)
T ss_dssp HHHHHH--SSSS---------------SCHHHHHHHHHHHHHHH--T-HHHHHHHHHHHHHHHHT-TT-TT-STS-HHHH
T ss_pred HHHHHHcCCCCccc-------------ccHHHHHHHHHHHHHhc--cchhHHHHHHHHHHHHhcC-Ccccc-cccchHHH
Q ss_pred HHHHhhcccccCCCHHHHHHHHHHHHHHhhccCcHHHHHHHhcCCHHHHHHHHHHH
Q 000599 940 LWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRAL 995 (1400)
Q Consensus 940 ~~l~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~L~~~~~~~l~~~l 995 (1400)
.++ .+.++...-.+.|... +..+...=.+.++..+..+|
T Consensus 173 ~~v-------------~~~~~~~g~~~~~~~l----~~~~~~~~~~~~k~~~l~aL 211 (324)
T PF11838_consen 173 WAV-------------YCAGVRNGDEEEWDFL----WELYKNSTSPEEKRRLLSAL 211 (324)
T ss_dssp HHH-------------HHHHTTS--HHHHHHH----HHHHHTTSTHHHHHHHHHHH
T ss_pred HHH-------------HHHHHHHhhHhhHHHH----HHHHhccCCHHHHHHHHHhh
No 364
>cd00870 PI3Ka_III Phosphoinositide 3-kinase (PI3K) class III, accessory domain (PIK domain); PIK domain is conserved in all PI3 and PI4-kinases. Its role is unclear but it has been suggested to be involved in substrate presentation. In general, PI3Ks class III phosphorylate phosphoinositol (PtdIns) only. The prototypical PI3K class III, yeast Vps34, is involved in trafficking proteins from Golgi to the vacuole.
Probab=21.91 E-value=2.4e+02 Score=30.01 Aligned_cols=77 Identities=18% Similarity=0.157 Sum_probs=53.1
Q ss_pred HHHHHHHHhcCCcHHHHHHHHHHHHHHHhhcChhhHHHhhhhhccCCchhhHhHHHHHHHHHHhhcCHHHHHhhhhhhHH
Q 000599 1254 VIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLP 1333 (1400)
Q Consensus 1254 ~l~~ll~~~~D~~k~V~~aA~~al~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP 1333 (1400)
.||++|.++.=.....+..+...+..+. -+.|..++..|.+.+. +-.+|..|++.|.. .+.++|...||.++-
T Consensus 47 aL~~~L~sv~W~~~~e~~e~~~lL~~W~-~i~~~~aLeLL~~~f~--~~~VR~yAV~~L~~----~sd~eL~~yL~QLVQ 119 (166)
T cd00870 47 ALTKFLKSVNWSDEQEVKQALELMPKWA-KIDIEDALELLSPYFT--NPVVRKYAVSRLKL----ASDEELLLYLLQLVQ 119 (166)
T ss_pred HHHHHhhhCCCCCHHHHHHHHHHHhcCC-CCCHHHHHHHcCccCC--CHHHHHHHHHHHHh----CCHHHHHHHHHHHHH
Confidence 5777777763233445555666676664 4688899999998885 35578888887664 667889888777755
Q ss_pred HHHH
Q 000599 1334 ALFE 1337 (1400)
Q Consensus 1334 ~l~~ 1337 (1400)
+|.=
T Consensus 120 aLKy 123 (166)
T cd00870 120 ALKY 123 (166)
T ss_pred HHHh
Confidence 5543
No 365
>KOG2085 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=21.73 E-value=1.9e+02 Score=34.83 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=54.6
Q ss_pred HHHHHHHHHhhccCCchHHHHHHHHHHHh--hccccCCCchhHHHHHHHHHHHhh-CCchhhhHHHHHHHHHHHhcc
Q 000599 815 FEKVMKLFFQHLDDPHHKVAQAALSTLAD--IIPSCRKPFESYMERILPHVFSRL-IDPKELVRQPCSTTLDIVSKT 888 (1400)
Q Consensus 815 l~~l~~~~~~~l~Dsn~kV~~~~Le~L~~--li~~~~~~l~~~l~~ll~~L~~kl-gD~k~~vr~~~~~~L~~~~~~ 888 (1400)
...||+-+.+-++.+||+|+-.+|....- +.-...+.-+-.++++.|+|..+. ++=+..|.+.+..+|..+++.
T Consensus 339 ~~PLf~qia~c~sS~HFQVAEraL~~wnNe~i~~Li~~n~~~ilPiiFpaLyr~sk~hWN~~i~~l~~nvlk~f~em 415 (457)
T KOG2085|consen 339 MVPLFRQIARCVSSPHFQVAERALYLWNNEYIRSLISQNAEVILPIVFPALYRNSKSHWNQAIHNLILNVLKTFMEM 415 (457)
T ss_pred hHHHHHHHHHHcCChhHHHHHHHHHHHhhHHHHHHHHhccceeeehhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34678888999999999999999877652 233334444566777888888776 577788888888888887753
No 366
>PF10441 Urb2: Urb2/Npa2 family; InterPro: IPR018849 This entry represents a conserved domain found towards the C terminus of proteins involved in ribosome biogenesis, such as the Urb2 protein from yeast [].
Probab=21.64 E-value=1.1e+03 Score=26.09 Aligned_cols=170 Identities=12% Similarity=0.192 Sum_probs=96.6
Q ss_pred HHHHHHHHHhcCCh--hhHHHHHHHHHHHHHHHhcC--------CChHHHHHHHHHHHHHHhhccccccc---cHHHHHH
Q 000599 1190 ALQQLIKASVANDH--SIWTKYFNQILTAVLEVLDD--------ADSSVREVALSLINEMLKNQKDVMED---SVEIVIE 1256 (1400)
Q Consensus 1190 al~~L~~~l~~~~~--~~~~~~f~~ll~~Ll~~l~d--------~~~~vR~~aL~~L~~l~~~~~~~~~~---~~e~~l~ 1256 (1400)
++..|..++..... ..| ++..++..+.....+ ....+=...+.+|..|++....++.. -+..++.
T Consensus 8 ~l~~l~~ll~~~~~~~sq~--~ie~~l~~~~~~~~~~~~~~~~~~~~~if~~~~~ll~~il~~hr~~l~~r~hll~~~l~ 85 (223)
T PF10441_consen 8 ILEILKQLLSSKPWLFSQY--NIEQILSILSTLFSSLRNTLSADSSPSIFISLCRLLSSILRHHRFKLSGRFHLLLSVLQ 85 (223)
T ss_pred HHHHHHHHHhcCchhccch--hHHHHHHHHHHHHcccccccccchhHHHHHHHHHHHHHHHHHhHHHHcCCChHHHHHHH
Confidence 45555555555432 333 377777777766632 12235556788999999887655443 3555666
Q ss_pred HHHHHhc------C--CcHHHHHH--HHHHHHHHHhhcChhhHHHhhhhhccCC--chhhHhHHHHHHHHHHhhcCHHHH
Q 000599 1257 KLLHVTK------D--AVPKVSNE--AEHCLTVVLSQYDPFRCLSVIVPLLVTE--DEKTLVTCINCLTKLVGRLSQEEL 1324 (1400)
Q Consensus 1257 ~ll~~~~------D--~~k~V~~a--A~~al~~i~~~~~p~~~l~~l~~~l~s~--~~~~~~~alk~l~~lv~~~~~~~l 1324 (1400)
.+|.++. + ........ |..+.+.+...+.| ..+.+. .-...-.+.+.. +..+
T Consensus 86 ~LL~~l~~~~~~~~~~~~~~s~~~~~a~~~aRlL~~l~ep--------~~~~~~~~~~~~l~~~~~~~--------k~~~ 149 (223)
T PF10441_consen 86 RLLRCLFSPNSQRSSKQLGLSAEAEEAKAFARLLTNLCEP--------SSVSRSSKKTSSLTSATSSA--------KKSL 149 (223)
T ss_pred HHHHHHHhcCccccccccccchhhHHHHHHHHHHHHHhCc--------ccccccccccccccHHHHHH--------HHHH
Confidence 6666555 1 11222334 77777777777777 122111 111111112211 1445
Q ss_pred HhhhhhhHHHHHHHh--cCCCHHHHHHHHHHHHHHHHHhhh-hcchhhhhhcHHHH
Q 000599 1325 MAQLPSFLPALFEAF--GNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQL 1377 (1400)
Q Consensus 1325 ~~~l~~liP~l~~~~--~d~~seVRkaAv~~lv~~~~~lge-~~~p~l~~L~~s~~ 1377 (1400)
..|+|-++=.-+... ..-.++||++=.-++.+++.+.++ ++.-....|..+-+
T Consensus 150 ~kh~~~lL~~Yi~~~~~~~l~~~vr~~L~pGiy~l~d~~s~~e~~~l~a~Ld~~gr 205 (223)
T PF10441_consen 150 RKHAPYLLANYISLQLKYTLPPEVREALMPGIYALFDVCSQHELQQLNASLDASGR 205 (223)
T ss_pred HhHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhCCHHHHHHHHHHcChHHH
Confidence 556555544444443 346899999999998889888886 65555566766664
No 367
>KOG1993 consensus Nuclear transport receptor KAP120 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=21.23 E-value=1.9e+03 Score=29.25 Aligned_cols=116 Identities=16% Similarity=0.153 Sum_probs=74.3
Q ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCchhHHHhHHHHHHHH---Hhhhc--ccchHHHHHHHHHHHHHHHHhhhhHHHHHH
Q 000599 295 PDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPL---STQLS--DRRSSIVKQACHLLCFLSKELLGDFEACAE 369 (1400)
Q Consensus 295 ~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~L---~~~l~--Dlrs~Vv~~Ac~~l~~La~~Lg~~f~~~a~ 369 (1400)
+..|--.|.++.+.++-++..-...-+.|.+.+..+...+ .+.+. |.|..|. .+++.+-...+....|++-
T Consensus 537 d~~D~vV~Ltt~~tlkl~vDD~nF~~dsFlp~lenlf~~lfkll~~~~e~Dtk~~VL----~~ls~lI~r~~e~I~P~~~ 612 (978)
T KOG1993|consen 537 DQNDLVVRLTTARTLKLVVDDWNFSEDSFLPYLENLFVLLFKLLKAVEECDTKTSVL----NLLSTLIERVSEHIAPYAS 612 (978)
T ss_pred ccccceeehHHHHHHHHhhhhccCChhhhhhhHHHHHHHHHHHHHHHhhhhhHHHHH----HHHHHHHHHHHHhhhHHHH
Confidence 3357788999999999888764433345665554444443 33333 6666554 5666677777777778777
Q ss_pred HHHHHHHHHhch--hhHHHHHHHHHHHHHHHHhCCC------cchHHHHHHHh
Q 000599 370 MFIPVLFKLVVI--TVLVIAESSDNCIKTMLRNCKA------VRVLPRIADCA 414 (1400)
Q Consensus 370 ~~lp~Ll~~~~~--~kkvi~~sa~~al~~i~~~~~~------~rll~~i~~~l 414 (1400)
.++..|-++... +-...+-+...+++.++...+. +-++|.|.-++
T Consensus 613 ~ivq~lp~LWe~s~~e~lLr~alL~~L~~lV~alg~qS~~~~~fL~pVIel~~ 665 (978)
T KOG1993|consen 613 TIVQYLPLLWEESEEEPLLRCALLATLRNLVNALGAQSFEFYPFLYPVIELST 665 (978)
T ss_pred HHHHHHHHHHhhhccCcHHHHHHHHHHHHHHHHhccCCccchHHHHHHHHHhc
Confidence 766655444433 3457788888888888877652 34556555554
No 368
>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]
Probab=21.11 E-value=1.7e+03 Score=27.86 Aligned_cols=110 Identities=15% Similarity=0.201 Sum_probs=72.3
Q ss_pred HHHHHhhcCCCCChhHHHHHHHHHHHHHhcCChhhHHH--HHHHHHHHHHHHh-------cC-CChHHHHHHHHHHHHHH
Q 000599 1171 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTK--YFNQILTAVLEVL-------DD-ADSSVREVALSLINEML 1240 (1400)
Q Consensus 1171 ~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~--~f~~ll~~Ll~~l-------~d-~~~~vR~~aL~~L~~l~ 1240 (1400)
+.+..+..++| +||-+||.-+.++++.++.....+ .|+-+=-.+++.| +| ++.+-+..++.+|.-.|
T Consensus 15 ~~~~L~~~k~D---~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC 91 (698)
T KOG2611|consen 15 DCLKLLKGKRD---EERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFC 91 (698)
T ss_pred hHHHHhcccCh---HHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHh
Confidence 35555555654 899999999999999887766433 2332222233322 22 45678888999999999
Q ss_pred hhcccccccc---HHHHHHHHHHHhcCCc----HHHHHHHHHHHHHHHhh
Q 000599 1241 KNQKDVMEDS---VEIVIEKLLHVTKDAV----PKVSNEAEHCLTVVLSQ 1283 (1400)
Q Consensus 1241 ~~~~~~~~~~---~e~~l~~ll~~~~D~~----k~V~~aA~~al~~i~~~ 1283 (1400)
+...-.-++- ..++|..++..-.|+. ..|...+-+|+..++.+
T Consensus 92 ~~pElAsh~~~v~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~ 141 (698)
T KOG2611|consen 92 RVPELASHEEMVSRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATA 141 (698)
T ss_pred CChhhccCHHHHHhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcC
Confidence 8643222332 3345556666667764 33788999999999987
No 369
>KOG2842 consensus Interferon-related protein PC4 like [Cytoskeleton]
Probab=20.67 E-value=7.4e+02 Score=29.94 Aligned_cols=137 Identities=16% Similarity=0.026 Sum_probs=0.0
Q ss_pred cCChHHHHHHHHHHhhhcC--CCCCHHHHHHHHHHHHHHHhcCCCCchhHH-HhHHHHHHHHHhhhcccchHHHHHHHHH
Q 000599 276 VYSEKELIREFEKIGSTLV--PDKDWSVRIAAMQRVEGLVLGGAADHPCFR-GLLKQLVGPLSTQLSDRRSSIVKQACHL 352 (1400)
Q Consensus 276 i~s~~dl~~~l~ki~~~l~--~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~-~~L~~L~~~L~~~l~Dlrs~Vv~~Ac~~ 352 (1400)
+-+..+-++..++..+.+. .++.=++|.++|+.+.-.+.. ..++.|+ +..-.+...+.+.++.-++-=..-+-.+
T Consensus 49 l~~s~~~~dl~~~~~d~lde~~dk~AktR~~~le~i~lalt~--r~l~~fi~e~~~tl~~~~~k~~~k~~sd~q~~a~~~ 126 (427)
T KOG2842|consen 49 LDESGTQEDLEEKLKDDLDEVKDKSAKTRQEALEKIYLALTS--RHLPEFILENRATLEDLLEKCLNKPKSDEQLLAAAL 126 (427)
T ss_pred hcccccHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH--HHhHHHhhhhHHHHHHHHHHHhcCCccHHHHHHHHH
Q ss_pred HHHHHHHhh--hhHHHHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHhCCCcchHHHHHHHh
Q 000599 353 LCFLSKELL--GDFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCA 414 (1400)
Q Consensus 353 l~~La~~Lg--~~f~~~a~~~lp~Ll~~~~~~kkvi~~sa~~al~~i~~~~~~~rll~~i~~~l 414 (1400)
++.++-.+| ..-+-......|.+...+.+..+.|.-.+.-|...-+-......=+..+...+
T Consensus 127 ~g~~~vqlg~~q~~ee~~~t~~~~~~li~~d~s~sv~~r~~ca~sl~v~~l~a~~d~~e~~~~l 190 (427)
T KOG2842|consen 127 IGLLCVQAGPGQEEEEWTKTLGPFLALILDDESASIKARSICATSLGTACLIAEADIIELGSFL 190 (427)
T ss_pred HHHHHHhccCcchhhHHHhccchHHHHHhhccccchHHHHHHHHHHHHHHHHHhhhHHHHHHHH
No 370
>KOG1848 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.63 E-value=2.6e+03 Score=29.93 Aligned_cols=327 Identities=11% Similarity=0.046 Sum_probs=0.0
Q ss_pred HHHhcCCCHHHHHHHHHHHHHHHHhhhccCChHh--HHHHHHHHHhhhccCCcchHHHHHHHHHHHH-HHhhhhhHhhhh
Q 000599 5 LELARAKDTKERMAGVERLHQLLEASRKSLTSAE--VTSLVDCCLDLLKDNNFKVSQGALQSLASAA-VLSGEHFKLHFN 81 (1400)
Q Consensus 5 l~~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~--~~~lv~~l~~~l~DsN~~V~~~aL~~l~~l~-~~l~~~~~~~~~ 81 (1400)
+.-..+..-..|..-++.|..+++..++.+-... +-+.++.+.....+...+++..+++++..+. ..++..-..++.
T Consensus 848 v~~~s~~~~evr~~sl~~l~silet~ge~ll~~w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~ 927 (1610)
T KOG1848|consen 848 VSDNSSRGVEVRISSLEALVSILETVGEHLLHGWQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCIL 927 (1610)
T ss_pred HHHhcCccceeeHHHHHHHHHHHhccchhhccccHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHH
Q ss_pred hhHHHHHHHhCCCChhHHHHHHHHHHHHHHHhchhHH-HHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhh
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTII-VERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAI 160 (1400)
Q Consensus 82 ~ilp~LleKLgD~K~~vre~a~~~L~~l~e~~~p~~V-~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~ 160 (1400)
.++..++.-.....+. .....++..+|-..+--.. ....-+.+-+|+.-..-.. ..-.+..-...+=+ .+
T Consensus 928 ~lidtl~~fs~Qktdl--NISltAi~lfWtvsDfl~~km~S~sed~~~~~~~e~~~s-----s~~~~~~l~e~lwi--~l 998 (1610)
T KOG1848|consen 928 DLIDTLLVFSRQKTDL--NISLTAIGLFWTVSDFLKNKMFSTSEDSCAYNSVEDLYS-----SMKSKEILPEVLWI--ML 998 (1610)
T ss_pred HHHHHHHHHHhhhccc--cccHHHHHHHHHHHHHHHhhhhccchhhhhhcchhhhcc-----cccchhhhhhHHHH--HH
Q ss_pred HHHHHHhhCCCChhHHHHHHHHHHHHHhhhC-------------hhHHHhhhc---CCCChhhHHHHHHHHHhhCCCCCC
Q 000599 161 LPPILQMLNDPNPGVREAAILCIEEMYTYAG-------------PQFRDELHR---HNLPNSMVKDINARLERIQPQIRS 224 (1400)
Q Consensus 161 lp~l~~~L~d~n~~VR~aA~~~l~~l~~~~G-------------~~l~~~L~~---~~l~~~~l~~i~~~~~~~~~~~~~ 224 (1400)
+..+.++.+|.-++||+.|.+++-.++...| ..+.+.|.+ .++.+-.=++|++..++.
T Consensus 999 l~~L~~~~~dsr~eVRngAvqtlfri~~Shg~~l~~~aW~s~~w~vi~pLLd~~~~q~~~ewngkeiqkqwtet------ 1072 (1610)
T KOG1848|consen 999 LVHLADLCEDSRAEVRNGAVQTLFRIFNSHGSKLGTNAWASCCWLVIMPLLDSQPIQNVSEWNGKEIQKQWTET------ 1072 (1610)
T ss_pred HHHHHHHhccchHHHhhhHHHHHHHHHhhhcccCChhHHHHHHHHHHHHHhccccccchhhhcchhHhhhhhhh------
Q ss_pred CCCCCCcchhhhhccccCCCCCCCccccccccccccCCCCCCccccCCCcccCChHHHHHHHHHHhhhcCCCCC-HHHHH
Q 000599 225 SDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIREFEKIGSTLVPDKD-WSVRI 303 (1400)
Q Consensus 225 ~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~v~i~s~~dl~~~l~ki~~~l~~~~d-W~~R~ 303 (1400)
-+..-.-+.+.|..-.+.|..-.+ |+.-.
T Consensus 1073 --------------------------------------------------~~ltisgIaklf~e~fk~llnln~f~~vwe 1102 (1610)
T KOG1848|consen 1073 --------------------------------------------------SCLTISGIAKLFSENFKLLLNLNGFLDVWE 1102 (1610)
T ss_pred --------------------------------------------------hhhhHHHHHHHHHHHHHHHHhcccHHHHHH
Q ss_pred HHHHHHHHHHhcCCCCch-hHHHhHHHHHHHHHhhhcccchH---HHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHh
Q 000599 304 AAMQRVEGLVLGGAADHP-CFRGLLKQLVGPLSTQLSDRRSS---IVKQACHLLCFLSKELLGDFEACAEMFIPVLFKLV 379 (1400)
Q Consensus 304 ~AL~~l~~ll~~~~~~~~-~f~~~L~~L~~~L~~~l~Dlrs~---Vv~~Ac~~l~~La~~Lg~~f~~~a~~~lp~Ll~~~ 379 (1400)
+.|+-+..++.....+.. .-+..++++.-.++.. .++|.. -........+.+.+.+...-....-.+...++..+
T Consensus 1103 ~ll~flkrl~s~~s~e~slsai~~~qell~sii~~-~~ln~~~~~k~n~vf~~y~~~~~~~ssas~~t~~kv~~eiltgl 1181 (1610)
T KOG1848|consen 1103 ELLQFLKRLHSDISPEISLSAIKALQELLFSIIEF-GKLNATFTLKINLVFINYGRFCEVSSSASERTLAKVSQEILTGL 1181 (1610)
T ss_pred HHHHHHHHHHhcCChHhHHHHHHHHHHHHHHHhhh-ccccchHHHHhhhhhhhHhhhcccccccchhHHHHHHHHHHhhh
Q ss_pred chhhHHHHHHHHHHHHHH
Q 000599 380 VITVLVIAESSDNCIKTM 397 (1400)
Q Consensus 380 ~~~kkvi~~sa~~al~~i 397 (1400)
+.....+..+-...+..+
T Consensus 1182 ~~~vqs~sk~d~~~~e~~ 1199 (1610)
T KOG1848|consen 1182 IESVQSLSKADNFGIEEI 1199 (1610)
T ss_pred HHHHHHHHhhcchhHHHH
No 371
>PF14961 BROMI: Broad-minded protein
Probab=20.45 E-value=2.1e+02 Score=39.11 Aligned_cols=74 Identities=19% Similarity=0.302 Sum_probs=55.3
Q ss_pred CHHHHHHHhhcCCCCChhHHHHHHHHHHHHHhcC--ChhhHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHhhccc
Q 000599 1168 SIPQILHLMCNGNDGSPTSKHGALQQLIKASVAN--DHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQKD 1245 (1400)
Q Consensus 1168 ~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~--~~~~~~~~f~~ll~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~~~ 1245 (1400)
...-+++++.-.+- -+.|.+|++.|-.+-..+ +.+.|. .+...|...|.|++..+.+.+|.+.+.++..-+.
T Consensus 162 ~lq~i~d~ld~~~P--~evR~eAlq~Lc~~p~SDVls~E~W~----~L~~~L~~~LsDpD~~is~~~L~f~Ak~fssSpl 235 (1296)
T PF14961_consen 162 QLQLIADKLDPGQP--KEVRLEALQILCSAPPSDVLSCESWS----VLRENLTDALSDPDPEISDASLRFHAKMFSSSPL 235 (1296)
T ss_pred HHHHHHHhcCCCCc--hHHHHHHHHHHhcCChhhccccccHH----HHHHHHHHHcCCCCHHHHHHHHHHHHHhccCCch
Confidence 35667777765542 479999999988775544 456676 3445788999999999999999999988877655
Q ss_pred cc
Q 000599 1246 VM 1247 (1400)
Q Consensus 1246 ~~ 1247 (1400)
.+
T Consensus 236 ~~ 237 (1296)
T PF14961_consen 236 NM 237 (1296)
T ss_pred hh
Confidence 54
No 372
>KOG4346 consensus Uncharacterized conserved protein [Function unknown]
Probab=20.44 E-value=5.2e+02 Score=33.37 Aligned_cols=107 Identities=15% Similarity=0.166 Sum_probs=0.0
Q ss_pred HHHHHHHhhhccC-CcchHHHHHHHHHHHHHHhhhhhHhhhhhhHHHHH---HHhCCCChhHHHHHHHHHHHHHHHhchh
Q 000599 41 SLVDCCLDLLKDN-NFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVV---ERLGDAKQPVRDAARRLLLTLMEVSSPT 116 (1400)
Q Consensus 41 ~lv~~l~~~l~Ds-N~~V~~~aL~~l~~l~~~l~~~~~~~~~~ilp~Ll---eKLgD~K~~vre~a~~~L~~l~e~~~p~ 116 (1400)
.+|.-+...+.++ ++.|.+.||..+..++.+.+..+......++..++ ++++-.| -.+.=..++.+++ .+.|.
T Consensus 508 aYV~Dl~emL~~~E~yE~~eaAL~nae~LI~r~pt~~rq~A~eLlq~lLhLqn~f~~~~--F~etq~~aiVa~~-vT~p~ 584 (849)
T KOG4346|consen 508 AYVADLFEMLLEKEKYEVFEAALFNAENLINRRPTGFRQIAEELLQRLLHLQNNFGTPK--FKETQVDAIVAAC-VTQPP 584 (849)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHhcCccc--hhhhhHHHHHHHH-hcCCC
Q ss_pred HHHHHHhhhhhhcC---ChhHHHHHHHHHHHHHHhcc
Q 000599 117 IIVERAGSYAWTHR---SWRVREEFARTVTSAIGLFS 150 (1400)
Q Consensus 117 ~V~e~l~~~~~~~K---npkvr~~~l~~L~~~l~~fg 150 (1400)
.+.+.++...+... .-++|.-++.+|..+-++++
T Consensus 585 pcapylcrqf~a~n~~YS~rQRiliL~vi~lAA~els 621 (849)
T KOG4346|consen 585 PCAPYLCRQFIAPNQGYSIRQRILILSVIHLAADELS 621 (849)
T ss_pred cchhHHHHHhhcCCCcccHHHHHHHHHHHHHHHHHhC
No 373
>KOG2073 consensus SAP family cell cycle dependent phosphatase-associated protein [Cell cycle control, cell division, chromosome partitioning]
Probab=20.43 E-value=2.1e+03 Score=29.24 Aligned_cols=82 Identities=13% Similarity=0.238 Sum_probs=54.3
Q ss_pred HHHHHHHHhchhHHHHHHhhhhhhcCChhHHHHHHHHHHHHHHhccCcchhhhhhhHHHHHHhhCCC-ChhHHHHHHHHH
Q 000599 105 LLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDP-NPGVREAAILCI 183 (1400)
Q Consensus 105 ~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~l~~fg~~~l~l~k~~lp~l~~~L~d~-n~~VR~aA~~~l 183 (1400)
++..+..+++-..+++-|++.....+-.-.|.++++||.. ..+++.++.++..+ +++|-..|.+.|
T Consensus 149 ~v~~~l~hi~~stlMD~Llkli~~de~~~p~~~Viq~l~d-------------~~li~kll~ll~ps~~~~~qsna~~~L 215 (838)
T KOG2073|consen 149 FVDLFLKHIDISTLMDFLLKLISTDEPESPRTDVIQWLND-------------QELIPKLLELLNPSKDPDVQSNAGQTL 215 (838)
T ss_pred HHHHHHHHcCccHHHHHHHHhccccCCCCchHHHHHHHhh-------------HHHHHHHHHHhCCccccchhHHHHHHH
Confidence 3334444555556666666644333333334889999964 46888888888754 468999999999
Q ss_pred HHHHhhh----C-hhHHHhhh
Q 000599 184 EEMYTYA----G-PQFRDELH 199 (1400)
Q Consensus 184 ~~l~~~~----G-~~l~~~L~ 199 (1400)
+.|-+.. | ..|.+.|.
T Consensus 216 ~~iv~~s~~~~gPn~L~~qL~ 236 (838)
T KOG2073|consen 216 CAIVRLSRNQPGPNPLTKQLE 236 (838)
T ss_pred HHHHhcccccCCCCHHHHhhc
Confidence 9998872 3 33666665
No 374
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=20.29 E-value=3.8e+02 Score=34.95 Aligned_cols=63 Identities=16% Similarity=0.139 Sum_probs=49.5
Q ss_pred HHHHHHHHHhhCCchhhhHHHHHHHHHHHhccCCchh--hHHHHHHhhccC-CCchhHHHHHHHHH
Q 000599 857 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDS--LLPALLRSLDEQ-RSPKAKLAVIEFAI 919 (1400)
Q Consensus 857 ~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~--~l~~l~r~l~~~-~~~k~k~~~L~~l~ 919 (1400)
.-||-.|++||||....+-+++...|..+-..+|+.. +...+.|+++.. .+-++..-.+.||.
T Consensus 340 ~~LL~~lVNKlGDpqnKiaskAsylL~~L~~~HPnMK~Vvi~EIer~~FRpn~~~ra~Yyav~fLn 405 (988)
T KOG2038|consen 340 NNLLVLLVNKLGDPQNKIASKASYLLEGLLAKHPNMKIVVIDEIERLAFRPNVSERAHYYAVIFLN 405 (988)
T ss_pred HHHHHHHHHhcCCcchhhhhhHHHHHHHHHhhCCcceeehHHHHHHHHcccCccccceeehhhhhh
Confidence 4577889999999999999999999999998888865 567888888653 45566665555554
No 375
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis]
Probab=20.21 E-value=7.5e+02 Score=28.24 Aligned_cols=130 Identities=14% Similarity=0.124 Sum_probs=0.0
Q ss_pred CHHHHHHhcC-CCHHHHHHHHHHHHHHHHhhhccCChHhHHHHHHHHHhhhc-----cCCcchHHHHHHHHHHHHHHhhh
Q 000599 1 MEEALELARA-KDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLK-----DNNFKVSQGALQSLASAAVLSGE 74 (1400)
Q Consensus 1 ~e~~l~~l~s-~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~-----DsN~~V~~~aL~~l~~l~~~l~~ 74 (1400)
+|+|...++. .+.-.=++|++.|..+++... ...+.++...+.+... |.|..-...+.+++..++.+..-
T Consensus 14 ie~f~~~l~eDpd~a~~vAAIraL~~vL~~s~----a~Ti~el~~~l~~a~~tL~~~d~ss~Sl~agcdlF~Rfvtr~sl 89 (313)
T KOG1466|consen 14 IEYFLSFLQEDPDLAMAVAAIRALLEVLRRSQ----ATTIAELENELKSASATLKKTDTSSISLRAGCDLFMRFVTRASL 89 (313)
T ss_pred HHHHHHHHhcCchhhhHHHHHHHHHHHHhhcc----cchHHHHHHHHHHHHHHHHccCccchhhhhhhHHHHHHHHhhhh
Q ss_pred hhHhhhhhhHHHHHHH---hCCCChhHHHHHHHHHHHHHH-------HhchhHHHHHHhhhhhhcCChhH
Q 000599 75 HFKLHFNALVPAVVER---LGDAKQPVRDAARRLLLTLME-------VSSPTIIVERAGSYAWTHRSWRV 134 (1400)
Q Consensus 75 ~~~~~~~~ilp~LleK---LgD~K~~vre~a~~~L~~l~e-------~~~p~~V~e~l~~~~~~~Knpkv 134 (1400)
.--.....|-..++|| ++..--.-|....++-..++. +.--..|++.|....-++|-.+|
T Consensus 90 ld~~Df~~ck~~l~erg~~F~~~~~~sR~~IA~l~~~Fi~dg~~ILtHg~SRvVl~~L~~Aa~~~~~F~V 159 (313)
T KOG1466|consen 90 LDYEDFEQCKQHLLERGELFIERARKSRQKIAMLAQDFITDGCTILTHGYSRVVLEVLLTAAQNKKRFRV 159 (313)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHhhCCCEEEEcchhHHHHHHHHHHHhcCceEEE
Done!