Query 000599
Match_columns 1400
No_of_seqs 332 out of 1074
Neff 7.7
Searched_HMMs 29240
Date Tue Mar 26 17:26:58 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000599.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_370-374//hhsearch_pdb/000599hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4ffb_C Protein STU2; tubulin f 1.0 1 1 242.1 19.2 218 4-224 14-250 (278)
2 1u6g_C TIP120 protein, CAND1; 1.0 1 1 235.5 76.1 1032 2-1378 9-1204(1230)
3 2of3_A ZYG-9; multifunctional 1.0 1 1 233.1 25.2 205 2-218 49-264 (266)
4 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 217.7 20.8 212 1172-1387 21-249 (249)
5 2of3_A ZYG-9; multifunctional 1.0 1 1 214.5 17.9 203 781-997 54-263 (266)
6 2qk1_A Protein STU2; STU2P, XM 1.0 1 1 208.3 20.7 213 2-217 19-248 (249)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 206.1 71.5 194 1170-1377 859-1053(1230)
8 2qk2_A LP04448P; mini spindles 1.0 1 1 194.7 24.6 216 2-221 18-237 (242)
9 2qk2_A LP04448P; mini spindles 1.0 1 1 182.3 21.0 214 1171-1388 19-235 (242)
10 4fdd_A Transportin-1; heat rep 1.0 1 1 181.7 63.1 799 52-1383 24-850 (852)
No 1
>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=242.11 Aligned_cols=218 Identities=18% Similarity=0.196 Sum_probs=183.4
Q ss_pred HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHH----HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHH------
Q ss_conf 99883199999999999999999995213677586----99999999965204882438999999999999831------
Q 000599 4 ALELARAKDTKERMAGVERLHQLLEASRKSLTSAE----VTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSG------ 73 (1400)
Q Consensus 4 ~le~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~----~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~------ 73 (1400)
+-++|.|++||+|++||++|.+++..........+ +..+...+.+.++|+|++|+..+++++..++..++
T Consensus 14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~ 93 (278)
T 4ffb_C 14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN 93 (278)
T ss_dssp HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred HHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 77752068189999999999999863865555306799999989999998545449999999999999999851221012
Q ss_pred HHHHHHHHHHHHHHHHH-HCCCCHHHHHHHHHHHHHHHHHHCH-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
Q ss_conf 45676665369999998-3799946999999999999997163-589999855653149834799999999999974067
Q 000599 74 EHFKLHFNALVPAVVER-LGDAKQPVRDAARRLLLTLMEVSSP-TIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSA 151 (1400)
Q Consensus 74 ~~~~~~~~~ilp~LieK-LgD~K~~vre~a~~~L~~l~e~~~p-~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~i~~fg~ 151 (1400)
..+..++..++|.|++| |||.|..+|+.+.++|+.+++.+.+ ..+++.+.. +++||||+++.+++.||..++..||.
T Consensus 94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~~~e~l~~-~l~~Knpkv~~~~l~~l~~~l~~fg~ 172 (278)
T 4ffb_C 94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQSVELVIP-FFEKKLPKLIAAAANCVYELMAAFGL 172 (278)
T ss_dssp HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHHHHHHHGG-GGGCSCHHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHHCCCHHHHHHHHHHHHHHHHHHCC
T ss_conf 02588899998999999705763899999999999999861769999999999-88426877899999999999998498
Q ss_pred CCHHH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHH----HHHHCCCCCHHHHHHHHHHHHHHCCCCCC
Q ss_conf 64046---652699899740799943799999999999862173689----75401999956699999999751788999
Q 000599 152 TELTL---QRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFR----DELHRHNLPNSMVKDINARLERIQPQIRS 224 (1400)
Q Consensus 152 ~~l~~---~k~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~----~~L~~~~l~~~~l~~i~~~~~~~~~~~~~ 224 (1400)
..++. .+.+++.+.++|+|+|++||++|+++++++|+|+|+.+. .++. +++|+++++|+++|+++.+..++
T Consensus 173 ~~~~~k~~l~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~G~~~~~~~~~~l~--~lkp~~~k~le~~f~k~~~~~~~ 250 (278)
T 4ffb_C 173 TNVNVQTFLPELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVTGNNSDLLEEILFK--KLKPIQVKDLHKLFAKVGDEPSS 250 (278)
T ss_dssp TTCCHHHHHHHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-----------CTT--SSCHHHHHHHHHHHSCCCC----
T ss_pred CCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH--CCCHHHHHHHHHHHHHCCCCCCC
T ss_conf 7688144799999999999817869999999999999999968434455566661--18999999999999866799999
No 2
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=235.53 Aligned_cols=1032 Identities=16% Similarity=0.178 Sum_probs=541.8
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 88998831999999999999999999952136775869999999996520488243899999999999983145676665
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLKDNNFKVSQGALQSLASAAVLSGEHFKLHFN 81 (1400)
Q Consensus 2 e~~le~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~DsN~~V~~~al~~l~~l~~~l~~~~~~~~~ 81 (1400)
..+++++.+.|...|..|.+.|.+.+.......+......++..+..++.|.|..|...|+.+|..++..++. .+..
T Consensus 9 ~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~---~~~~ 85 (1230)
T 1u6g_C 9 SNLLEKMTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE---YQVE 85 (1230)
T ss_dssp HHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH---HHHH
T ss_pred HHHHHHCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCH---HHHH
T ss_conf 9999755898785999999999999741665787567999999999986699989999999999999975879---8999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH------------HHHHHHHHHHHH-CCCHHHHHHHHHHHHHHHHH
Q ss_conf 36999999837999469999999999999971635------------899998556531-49834799999999999974
Q 000599 82 ALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPT------------IIVERAGSYAWT-HRSWRVREEFARTVTSAIGL 148 (1400)
Q Consensus 82 ~ilp~LieKLgD~K~~vre~a~~~L~~l~e~~~p~------------~V~e~l~~~~~~-~Knpkvr~~~l~~L~~~i~~ 148 (1400)
.+++.|++.++|.++.+|..+..+|..+++...+. .++..++. ++. +.+|.+|.+++..+...++.
T Consensus 86 ~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~-~l~~~~~~~~~~~al~~l~~~~~~ 164 (1230)
T 1u6g_C 86 TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTS-AIAKQEDVSVQLEALDIMADMLSR 164 (1230)
T ss_dssp HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHH-HHSCCSCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHH-HHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 9999999986698388999999999999996797444441178899999999999-875788467999999999999998
Q ss_pred CCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHH--------HHHHHCC---CCCHHHHHHHHHHHHH
Q ss_conf 0676404665269989974079994379999999999986217368--------9754019---9995669999999975
Q 000599 149 FSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQF--------RDELHRH---NLPNSMVKDINARLER 217 (1400)
Q Consensus 149 fg~~~l~~~k~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l--------~~~L~~~---~l~~~~l~~i~~~~~~ 217 (1400)
+|....++...+++.+..+++|+++.||..|..+++.+....++.+ ...|... .++..-++.+..-...
T Consensus 165 ~~~~l~~~~~~ll~~l~~~L~~~~~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~ 244 (1230)
T 1u6g_C 165 QGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQ 244 (1230)
T ss_dssp TCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 27677887999999999987599689999999999999985689999999999999861677556899999999999998
Q ss_pred HCCCCCCCCCCCCCCHHHHHCCC-CCCC-CCCC------------CCC-CCC-C-------CCCCCCCC--CCCCCCCCC
Q ss_conf 17889998999886101001013-5898-8898------------322-245-5-------44566899--887545678
Q 000599 218 IQPQIRSSDGLPNTFAALEIKTA-SFNP-KKSS------------PKA-KSS-T-------RETSLFGG--EDITEKLIE 272 (1400)
Q Consensus 218 ~~~~~~~~~~~~~~~~~~~~r~~-s~~~-~r~~------------~~~-~ss-~-------~~~~~~g~--~~~~~~~v~ 272 (1400)
......+. .......-..-. ...+ .|.. +.. .+- . .....+.. .+.++...+
T Consensus 245 ~~~~~~~~---l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~ 321 (1230)
T 1u6g_C 245 AGHRIGEY---LEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDEN 321 (1230)
T ss_dssp SSGGGTTS---CTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC-------------
T ss_pred HHHHHHHH---HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCC
T ss_conf 68989988---999999999986689778999999999999997848777768999999999827899888764411011
Q ss_pred CCCCCCHHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHH
Q ss_conf 755577477999999875100--899897899999999999870599995017886999899898541651369999999
Q 000599 273 PIKVYSEKELIREFEKIGSTL--VPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQAC 350 (1400)
Q Consensus 273 ~i~i~s~~dl~~~l~ki~~~l--~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~l~~~l~Dlrs~Vv~~Ac 350 (1400)
. + +..+..+..+.....+ .++..|+.|..|+..+..++.... +.|...+..+...+...+.|....|...++
T Consensus 322 ~--~-~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~---~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~ 395 (1230)
T 1u6g_C 322 A--M-DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRH---EMLPEFYKTVSPALISRFKEREENVKADVF 395 (1230)
T ss_dssp --------------------------CTTHHHHHHHHHHHHHHTTCC---TTHHHHHTTTHHHHHSTTSCSSSHHHHHHH
T ss_pred C--C-CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCH---HHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 2--2-334465301100136664555677999999999999997466---679999999989999871798657999999
Q ss_pred HHHHHHHHHHHH-------------------HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCC------CCC
Q ss_conf 999999999645-------------------2899999999999998401147999999999999997279------701
Q 000599 351 HLLCFLSKELLG-------------------DFEACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCK------AVR 405 (1400)
Q Consensus 351 ~~l~~la~~L~~-------------------~f~~~a~~~lp~Ll~~~~~~k~vi~~sa~~al~~ii~~~~------~~r 405 (1400)
.++..+...++. .++.+...+++.+++.+.+....++..+..++..++..+. ...
T Consensus 396 ~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ 475 (1230)
T 1u6g_C 396 HAYLSLLKQTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPV 475 (1230)
T ss_dssp HHHHHHHHHHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHH
T ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHH
T ss_conf 99999999724243434675201356455999998746999999998613778799999999999999761105777999
Q ss_pred HHHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHH
Q ss_conf 28999999630799--8789999999999986199960000138999999999718999699999982079999999753
Q 000599 406 VLPRIADCAKNDRN--AVLRARCCEYALLVLEHWPDAPEIQRSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINE 483 (1400)
Q Consensus 406 ll~~i~~~l~~~Kn--~~~R~~~~~~L~~~L~~~~~~~~l~~~~~~l~~~i~k~l~Da~~e~A~~l~~~l~~~~qk~L~~ 483 (1400)
+++.+...+. +++ ..+|..++.++..++...+.. .+..+++.+.+.+..++.|.+.......+..+..- -+.+..
T Consensus 476 ll~~l~~~L~-d~~~~~~v~~~a~~~l~~~~~~~~~~-~~~~~l~~llp~L~~~l~d~~~~v~~~al~~l~~l-~~~~~~ 552 (1230)
T 1u6g_C 476 LVPGIIFSLN-DKSSSSNLKIDALSCLYVILCNHSPQ-VFHPHVQALVPPVVACVGDPFYKITSEALLVTQQL-VKVIRP 552 (1230)
T ss_dssp HHHHHHHHTT-CSSSCHHHHHHHHHHHHHHHHSSCGG-GGHHHHTTTHHHHHHHHTCSSHHHHHHHHHHHHHH-HHHHCC
T ss_pred HHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH-HHHHCC
T ss_conf 9999999974-87885168999999999999838988-78867999999999997142468999999999999-987167
Q ss_pred HCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHH
Q ss_conf 01988655688732224765544655655667789986401101345556789876730336775322100000246775
Q 000599 484 EDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAIVAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVL 563 (1400)
Q Consensus 484 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~rs~~~v~ 563 (1400)
...... ....| +-...+..--...... . .+..+
T Consensus 553 ~~~~~~-~~~~~-------------------------------------------~~~~ll~~ll~~l~~~-d-~~~~v- 585 (1230)
T 1u6g_C 553 LDQPSS-FDATP-------------------------------------------YIKDLFTCTIKRLKAA-D-IDQEV- 585 (1230)
T ss_dssp SSSCCC-CCCHH-------------------------------------------HHHHHHHHHHHHHSCS-S-SCHHH-
T ss_pred CCCCCC-CCHHH-------------------------------------------HHHHHHHHHHHHHHCC-C-CCHHH-
T ss_conf 555653-23278-------------------------------------------9999999999987326-9-98899-
Q ss_pred HHHHHCHHHHHH---HHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 330000135797---42044545678999766566678889999999999975688888874211234566887788889
Q 000599 564 NASKQKVSAIES---MLRGLEISDKQNPSTLRSSSLDLGVDPPSSRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRN 640 (1400)
Q Consensus 564 ~a~~~~~~~~~~---~~~g~~~~~~~~~~~~~s~s~~~~~~~p~s~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~r~ 640 (1400)
+..+..+ +....+ +... + ..+...+ .+. ...
T Consensus 586 -----r~~a~~~lg~L~~~~g--~~~~---------------~-----~~~~~l~--------~L~----~~l------- 619 (1230)
T 1u6g_C 586 -----KERAISCMGQIICNLG--DNLG---------------S-----DLPNTLQ--------IFL----ERL------- 619 (1230)
T ss_dssp -----HHHHHHHHHHHHHHTG--GGCC---------------T-----HHHHHHH--------HHH----HHT-------
T ss_pred -----HHHHHHHHHHHHHHHC--CHHH---------------H-----HHHHHHH--------HHH----HHH-------
T ss_conf -----9999999999999827--0324---------------4-----3889999--------999----884-------
Q ss_pred CCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCC
Q ss_conf 98765302431001368998887888665677887654578654443431000123663203798643111222337998
Q 000599 641 GGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEKLQERVSVEENDMREARRFVNPHIDRQYLDASYKDGN 720 (1400)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 720 (1400)
. ....|.. ..+.
T Consensus 620 ---------------------~------------~e~~r~~----------------~~~a------------------- 631 (1230)
T 1u6g_C 620 ---------------------K------------NEITRLT----------------TVKA------------------- 631 (1230)
T ss_dssp ---------------------T------------SSSHHHH----------------HHHH-------------------
T ss_pred ---------------------C------------CCHHHHH----------------HHHH-------------------
T ss_conf ---------------------4------------5305999----------------9999-------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHH
Q ss_conf 77788988887532100026898776655565664211358877667898996888644899999835679999999999
Q 000599 721 FRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMSNYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSL 800 (1400)
Q Consensus 721 ~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~s~~W~~R~egl~~L~~l 800 (1400)
+.. +. . +. .. . +...|.. .+...|.. ...+.+|..|..++..|..+
T Consensus 632 ----------------l~~-i~-~-~~-~~--~--------~~~~~~~---~i~~~L~~-~l~~~~~~~r~~a~~al~~l 677 (1230)
T 1u6g_C 632 ----------------LTL-IA-G-SP-LK--I--------DLRPVLG---EGVPILAS-FLRKNQRALKLGTLSALDIL 677 (1230)
T ss_dssp ----------------HHH-HT-T-CS-SC--C--------CCHHHHH---HHHHHHHH-HTTSCCHHHHHHHHHHHHHH
T ss_pred ----------------HHH-HH-H-CC-CC--C--------CHHHHHH---HHHHHHHH-HHHHCCHHHHHHHHHHHHHH
T ss_conf ----------------999-98-1-85-64--4--------3688899---99999999-99867888999999999999
Q ss_pred HHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCH--HHHHHHH
Q ss_conf 84499865899998999999987520697247999999988755101698704589988999997307962--5558999
Q 000599 801 LQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRKPFESYMERILPHVFSRLIDPK--ELVRQPC 878 (1400)
Q Consensus 801 l~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~L~~li~~~~~~l~~~l~~ll~~L~~klgD~k--~~vr~~~ 878 (1400)
+...+..+.. ..+..++..+.+.+.|.+..+...++++|..++...+..+.+++..+++.++..+.+.. +......
T Consensus 678 ~~~~~~~~~~--~~v~~~l~~ll~ll~~~D~~~~~~~~~~L~~l~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~l 755 (1230)
T 1u6g_C 678 IKNYSDSLTA--AMIDAVLDELPPLISESDMHVSQMAISFLTTLAKVYPSSLSKISGSILNELIGLVRSPLLQGGALSAM 755 (1230)
T ss_dssp HHHCCTTCCH--HHHHHHHTTCGGGSCTTCHHHHHHHHHHHHHHTTSCGGGGGGTTTTTHHHHHHHHTCTTCCHHHHHHH
T ss_pred HHCCCCCCCH--HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
T ss_conf 9604333898--99999999987635754187899999999999884912677767768999999975862105789999
Q ss_pred HHHHHHHHCCCCCHHHHHHHHHHHC-------------------------------------------CCCCC----HHH
Q ss_conf 9999998602990212799998521-------------------------------------------37991----257
Q 000599 879 STTLDIVSKTYSVDSLLPALLRSLD-------------------------------------------EQRSP----KAK 911 (1400)
Q Consensus 879 ~~~L~~~~~~~~~~~~l~~l~r~l~-------------------------------------------~~~~~----k~k 911 (1400)
......+...-++...+..++..+. ..+++ ..+
T Consensus 756 ~~~~~~l~~~~~~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~a~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 835 (1230)
T 1u6g_C 756 LDFFQALVVTGTNNLGYMDLLRMLTGPVYSQSTALTHKQSYYSIAKCVAALTRACPKEGPAVVGQFIQDVKNSRSTDSIR 835 (1230)
T ss_dssp HHHHHHHHTTCCTTCSHHHHHHHHSTTTTTC----CCHHHHHHHHHHHHHHHHHSCCCSHHHHTTTTTTTTTTTCCHHHH
T ss_pred HHHHHHHHHCCCCCCCHHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf 99999998347887889999999850035788732000104899999999998465666899999999837887667999
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHH
Q ss_conf 99999999998552049999887301799999662223589978999999999998510694789999840899999999
Q 000599 912 LAVIEFAISSLNKHAMNSEGSGNLGILKLWLAKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSL 991 (1400)
Q Consensus 912 ~~~L~~l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~Lp~~~~~~l 991 (1400)
.-.+..+.. +.. ..+-..+ .-....++.++.+.+.+||.+|..+|..++..+ .+ .....+
T Consensus 836 ~~~l~~l~~-~g~-~~~~~~~------~~l~~~~~~~l~~~~~~Vr~aAa~aLg~l~~~~-~~-----------~~lp~l 895 (1230)
T 1u6g_C 836 LLALLSLGE-VGH-HIDLSGQ------LELKSVILEAFSSPSEEVKSAASYALGSISVGN-LP-----------EYLPFV 895 (1230)
T ss_dssp HHHHHHHHH-HHH-HSCCCSC------THHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHT-HH-----------HHHHHH
T ss_pred HHHHHHHHH-HCC-CCCCCCC------CCHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCC-HH-----------HHHHHH
T ss_conf 999999998-615-6787656------418999999847997789999999968775269-99-----------889999
Q ss_pred HHHHHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHC
Q ss_conf 99986206135888999863111000357899999987888744444566777777778899877889987763000000
Q 000599 992 RRALKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNL 1071 (1400)
Q Consensus 992 ~~~l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1071 (1400)
...+... ++........|+.--... . .+.. .++
T Consensus 896 l~~l~~~-~~~~~~~l~al~e~i~~~----~---~~~~-----~~~---------------------------------- 928 (1230)
T 1u6g_C 896 LQEITSQ-PKRQYLLLHSLKEIISSA----S---VVGL-----KPY---------------------------------- 928 (1230)
T ss_dssp HHHHHSC-GGGHHHHHHHHHHHHHSS----C---STTT-----HHH----------------------------------
T ss_pred HHHHHCC-CHHHHHHHHHHHHHHHCC----C---HHHH-----HHH----------------------------------
T ss_conf 9987266-032498899999998238----7---6667-----766----------------------------------
Q ss_pred CCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 12667988871025777531047888677766667889988777888875565664222222346799999999666798
Q 000599 1072 MTGSMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNH 1151 (1400)
Q Consensus 1072 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1151 (1400)
.+.+...+-...+. .+ ++ -+.. .++.. +.. .
T Consensus 929 -------------~~~i~~~L~~~~~~------~~--------~~---~r~~---~a~~l---g~l---------~---- 959 (1230)
T 1u6g_C 929 -------------VENIWALLLKHCEC------AE--------EG---TRNV---VAECL---GKL---------T---- 959 (1230)
T ss_dssp -------------HHHHHHHHTTCCCC------SS--------TT---HHHH---HHHHH---HHH---------H----
T ss_pred -------------HHHHHHHHHHHHCC------CC--------HH---HHHH---HHHHH---HHH---------H----
T ss_conf -------------99999999987338------30--------44---6899---99887---566---------5----
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHH
Q ss_conf 99853223677878999789999841099999227999999999998308923599989999999999831889479999
Q 000599 1152 HKPSAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREV 1231 (1400)
Q Consensus 1152 ~~~~~~~~~~~~d~~~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~il~~Ll~~l~d~~~~vR~~ 1231 (1400)
..+..+.++.+...+.+.+ +..|..++..+..++...... +..+++.++..|+..+.|.+..||..
T Consensus 960 ----------~~~~~~l~p~l~~~l~~~~---~~~R~~~~~~l~~~~~~~~~~-~~~~l~~~~~~ll~~l~d~~~~vr~~ 1025 (1230)
T 1u6g_C 960 ----------LIDPETLLPRLKGYLISGS---SYARSSVVTAVKFTISDHPQP-IDPLLKNCIGDFLKTLEDPDLNVRRV 1025 (1230)
T ss_dssp ----------HSSGGGTHHHHTTTSSSSC---HHHHHHHHHHTGGGCCSSCCT-HHHHHHHHSTTTHHHHSSSSTHHHHH
T ss_pred ----------CCCHHHHHHHHHHHHCCCC---HHHHHHHHHHHHHHHCCCCHH-HHHHHHHHHHHHHHHCCCCCHHHHHH
T ss_conf ----------0676888899999856997---889999999999997068233-58989998999998648985879999
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCC------------------CCHHHHHHHHHHHHHHHHHCCH----HHH
Q ss_conf 999999999634454300199999999999459------------------9277999999999999921391----438
Q 000599 1232 ALSLINEMLKNQKDVMEDSVEIVIEKLLHVTKD------------------AVPKVSNEAEHCLTVVLSQYDP----FRC 1289 (1400)
Q Consensus 1232 aL~~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d------------------~~k~V~~aA~~~l~~i~~~~~p----~~~ 1289 (1400)
|+.+|..++++.+..+.+++..++|.+++.... ..-+++.+|-+|+-+++.+... ..+
T Consensus 1026 a~~~l~~~~~~~~~~~~~~l~~~lp~l~~~~~~~~~~~~~v~~gp~k~~vd~~l~~rk~a~~~~~~ll~~~~~~i~~~~~ 1105 (1230)
T 1u6g_C 1026 ALVTFNSAAHNKPSLIRDLLDTVLPHLYNETKVRKELIREVEMGPFKHTVDDGLDIRKAAFECMYTLLDSCLDRLDIFEF 1105 (1230)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTTSCCGGGEEEEEETTEEEEEETHHHHHHHHHHHHHHHHHSSCSSSCHHHH
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCHHHHEEECCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHH
T ss_conf 99999999842857689779889899998830268760133058960236774899999999999999988874789999
Q ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCC------------CHHHHHHHHHHHHHH
Q ss_conf 97421200377324596999999999832298899944235699999981599------------877999999999999
Q 000599 1290 LSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQ------------SADVRKTVVFCLVDI 1357 (1400)
Q Consensus 1290 l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~------------~seVRkaAv~~lv~~ 1357 (1400)
+..+..++.. ++-+++.|..|+.+|++..+ ..+..+++.+++.+.+.+.-. .-|..+++..|+.++
T Consensus 1106 ~~~~~~gl~d-~~di~~~~~~~l~~l~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~qe~e~~~e~~r~~~r~~~~l 1183 (1230)
T 1u6g_C 1106 LNHVEDGLKD-HYDIKMLTFLMLVRLSTLCP-SAVLQRLDRLVEPLRATCTTKVKANSVKQEFEKQDELKRSAMRAVAAL 1183 (1230)
T ss_dssp HHHHHHTTSS-CHHHHHHHHHHHHHHHHSCC-HHHHTTTTTTHHHHHHHHHCCCCTTSCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHCCCCC-HHHHHHHHHHHHHHHHHCCH-HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 9999804676-68899999999999984087-989999999999999998411463436524889999999999999999
Q ss_pred HHHHHHHCCHHHHHHCHHHHH
Q ss_conf 998512001122211177787
Q 000599 1358 YIMLGKAFLPYLERLNSTQLR 1378 (1400)
Q Consensus 1358 ~~~lGe~~~p~l~~L~~s~~k 1378 (1400)
..+.|-+--|.+..+..--++
T Consensus 1184 ~~~~~~~~~~~~~~~~~~~~~ 1204 (1230)
T 1u6g_C 1184 LTIPEAEKSPLMSEFQSQISS 1204 (1230)
T ss_dssp TSSCSCSSSSSCCCCCHHHHH
T ss_pred HHCCCCCCCHHHHHHHHHHHH
T ss_conf 807884227489999999980
No 3
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=233.15 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=140.0
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHHHHHHH--
Q ss_conf 88998831999999999999999999952136775869999999996520----488243899999999999983145--
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLLK----DNNFKVSQGALQSLASAAVLSGEH-- 75 (1400)
Q Consensus 2 e~~le~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l~----DsN~~V~~~al~~l~~l~~~l~~~-- 75 (1400)
+++..++.++|||.|++|++.|.+.+... ..++...+|.+.+|+. |+|++|...+|++|..++.+++..
T Consensus 49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~-----~~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y 123 (266)
T 2of3_A 49 VSLMSQLFHKDFKQHLAALDSLVRLADTS-----PRSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTET 123 (266)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHHC-----HHHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHC-----HHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999862877999999999999883017-----6999999999999999997188799999999999999999986455
Q ss_pred -HHHH-HHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf -6766-65369999998379994699999999999999716358999985565314983479999999999997406764
Q 000599 76 -FKLH-FNALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE 153 (1400)
Q Consensus 76 -~~~~-~~~ilp~LieKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~i~~fg~~~ 153 (1400)
+..| +..++|.|++|+||+|+.||+.+++++..+++.++|..+++.++. +++|||||+|+||+.|+..+++.||..
T Consensus 124 ~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~-g~ksKN~R~R~e~l~~l~~li~~~G~~- 201 (266)
T 2of3_A 124 PMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLD-ALKSKNARQRSECLLVIEYYITNAGIS- 201 (266)
T ss_dssp CCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHH-GGGCSCHHHHHHHHHHHHHHHHHHCSG-
T ss_pred CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCCC-
T ss_conf 650989997899999982897488999999999999987899999999999-971698999999999999999862997-
Q ss_pred HHHHHHHH---HHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 04665269---989974079994379999999999986217368975401999956699999999751
Q 000599 154 LTLQRAIL---PPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLPNSMVKDINARLERI 218 (1400)
Q Consensus 154 l~~~k~~i---p~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~~~~l~~i~~~~~~~ 218 (1400)
. ...+ |.++++++|+|.+||++|+++++++|+++|+.+.++++ ++++++++.|+++|...
T Consensus 202 --~-~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~v~k~lg--~L~~~~~~~l~er~~r~ 264 (266)
T 2of3_A 202 --P-LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQMWKAAG--RMADKDKSLVEERIKRT 264 (266)
T ss_dssp --G-GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTHHHHHHC--CCCHHHHHHHHHHHHHH
T ss_pred --C-CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHHHC
T ss_conf --2-000243479999873998789999999999999981199999884--48999999999998644
No 4
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=217.72 Aligned_cols=212 Identities=14% Similarity=0.216 Sum_probs=178.8
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHH-HHHCCCHHHH--HHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCC-CC
Q ss_conf 9998410999992279999999999-9830892359--998999999999983-18894799999999999996344-54
Q 000599 1172 ILHLMCNGNDGSPTSKHGALQQLIK-ASVANDHSIW--TKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQK-DV 1246 (1400)
Q Consensus 1172 ll~~l~~~~~~~~~~r~~al~~L~~-~l~~~~~~~~--~~~f~~il~~Ll~~l-~d~~~~vR~~aL~~L~~l~~~~~-~~ 1246 (1400)
....+...+ |++|++|+..|.. ++.. ....+ ...|..++..|...+ +|+|..||+.|+.+|..|+..++ ..
T Consensus 21 f~~~l~s~~---w~eRk~al~~L~~~~~~~-~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~ 96 (249)
T 2qk1_A 21 FQERITSSK---WKDRVEALEEFWDSVLSQ-TKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPG 96 (249)
T ss_dssp HHHHHTCSS---HHHHHHHHHHHHHHTGGG-CCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTT
T ss_pred HHHHHHCCC---HHHHHHHHHHHHHHHHHC-CCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCC
T ss_conf 787851687---999999999999999745-9865667423999999999983358989999999999999997626545
Q ss_pred CC-CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC------C-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 30-019999999999945992779999999999999213------9-143897421200377324596999999999832
Q 000599 1247 ME-DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQY------D-PFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGR 1318 (1400)
Q Consensus 1247 ~~-~~~e~~l~~ll~~~~d~~k~V~~aA~~~l~~i~~~~------~-p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~ 1318 (1400)
|. +|+..++|.+|++++|+.+.|+.++..|+.+|+.++ + ++.+++.|...+.+++|+++..++.++..+++.
T Consensus 97 f~~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~ 176 (249)
T 2qk1_A 97 FSKDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKE 176 (249)
T ss_dssp SCHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
T ss_conf 41878999999999987379779999999999999997301235776999999999987699839999999999999987
Q ss_pred CCH--HHHHHHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHCHHHHHHHHHHHHHH
Q ss_conf 298--8999442-35699999981599877999999999999998512-001122211177787899999853
Q 000599 1319 LSQ--EELMAQL-PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRI 1387 (1400)
Q Consensus 1319 ~~~--~~l~~~l-~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lGe-~~~p~l~~L~~s~~kLL~~yi~r~ 1387 (1400)
++. +.+..++ +.++|.|.++++|++++||++|..||+.+|.++|+ ++.||++.|.+.+++.|+.|++++
T Consensus 177 ~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~~Ld~~k~~ki~~~~~~~ 249 (249)
T 2qk1_A 177 EKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLEHLDNLKRKKIEETVKTL 249 (249)
T ss_dssp CCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHHHSCHHHHHHHHHHHHC-
T ss_pred CCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 6785066889879999999999866998999999999999999981978789999987088999999987459
No 5
>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=214.47 Aligned_cols=203 Identities=14% Similarity=0.251 Sum_probs=180.1
Q ss_pred CCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCC---CCHHH-H
Q ss_conf 9999983567999999999984499865899998999999987520697247999999988755101698---70458-9
Q 000599 781 LSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADIIPSCRK---PFESY-M 856 (1400)
Q Consensus 781 ~~~s~~W~~R~egl~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~L~~li~~~~~---~l~~~-l 856 (1400)
.+.++||+.|.+|++.|+..+++.++ ++..+++.+++|++.+|.|+|++|++.+||+|..++..+.+ .+.++ .
T Consensus 54 ~lfs~d~k~~~~ale~L~~~l~~~~~---~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~~ea 130 (266)
T 2of3_A 54 QLFHKDFKQHLAALDSLVRLADTSPR---SLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQEEV 130 (266)
T ss_dssp HHTCSCHHHHHHHHHHHHHHHHHCHH---HHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHHHCHH---HHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHH
T ss_conf 86287799999999999988301769---999999999999999971887999999999999999999864556509899
Q ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 98899999730796255589999999998602990212799998521379912579999999999855204999988730
Q 000599 857 ERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVDSLLPALLRSLDEQRSPKAKLAVIEFAISSLNKHAMNSEGSGNLG 936 (1400)
Q Consensus 857 ~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~~~l~~l~r~l~~~~~~k~k~~~L~~l~~~l~~~~~~~~~~~~~~ 936 (1400)
..+||.|++|+||+|+.||++++.+|..+...+|++.++++++..+ ..||+|+|.++|+++..++..|++.+
T Consensus 131 ~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v~~~~~v~~~l~~g~-ksKN~R~R~e~l~~l~~li~~~G~~~------- 202 (266)
T 2of3_A 131 SAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDVVGPLKMTPMLLDAL-KSKNARQRSECLLVIEYYITNAGISP------- 202 (266)
T ss_dssp HHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHHCHHHHHHHHHHGG-GCSCHHHHHHHHHHHHHHHHHHCSGG-------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCC-------
T ss_conf 9789999998289748899999999999998789999999999997-16989999999999999998629972-------
Q ss_pred HHHHHH---HHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHHHHH
Q ss_conf 179999---9662223589978999999999998510694789999840899999999999862
Q 000599 937 ILKLWL---AKLTPLVHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRALKQ 997 (1400)
Q Consensus 937 ~~~~~l---~~i~~l~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~Lp~~~~~~l~~~l~~ 997 (1400)
..++ ..++.+++|++++||.||.+|++++|.+.|.. ++.++.+||+..++++.+.+++
T Consensus 203 --~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~Gd~-v~k~lg~L~~~~~~~l~er~~r 263 (266)
T 2of3_A 203 --LKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFEGDQ-MWKAAGRMADKDKSLVEERIKR 263 (266)
T ss_dssp --GGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHHTTH-HHHHHCCCCHHHHHHHHHHHHH
T ss_pred --CCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-HHHHHHCCCHHHHHHHHHHHHH
T ss_conf --000243479999873998789999999999999981199-9998844899999999999864
No 6
>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=208.27 Aligned_cols=213 Identities=19% Similarity=0.261 Sum_probs=190.4
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHH-HHHHHHCCCC-HHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHH-HHHH
Q ss_conf 889988319999999999999999-9995213677-586999999999652-04882438999999999999831-4567
Q 000599 2 EEALELARAKDTKERMAGVERLHQ-LLEASRKSLT-SAEVTSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSG-EHFK 77 (1400)
Q Consensus 2 e~~le~l~s~~Wk~R~~ale~L~~-~l~~~~~~~~-~~~~~~lv~~l~~~l-~DsN~~V~~~al~~l~~l~~~l~-~~~~ 77 (1400)
.+|.+.+.|++|++|.+|++.|.. +++...+... ..++..+++.+.+++ +|+|+.|+..|+++++.+++.++ +.|.
T Consensus 19 ~~f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~ 98 (249)
T 2qk1_A 19 KDFQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS 98 (249)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCC
T ss_conf 20787851687999999999999999745986566742399999999998335898999999999999999762654541
Q ss_pred -HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH------C-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHC
Q ss_conf -666536999999837999469999999999999971------6-35899998556531498347999999999999740
Q 000599 78 -LHFNALVPAVVERLGDAKQPVRDAARRLLLTLMEVS------S-PTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLF 149 (1400)
Q Consensus 78 -~~~~~ilp~LieKLgD~K~~vre~a~~~L~~l~e~~------~-p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~i~~f 149 (1400)
+|...++|.|+++++|+|..|++++..+|..+++.+ + ++.+++.|+. +++||||.+|++++.||..++...
T Consensus 99 ~~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~-~l~~k~~~vk~~al~~l~~~~~~~ 177 (249)
T 2qk1_A 99 KDYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILE-HMKHKTPQIRMECTQLFNASMKEE 177 (249)
T ss_dssp HHHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHH-HTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHC
T ss_conf 8789999999999873797799999999999999973012357769999999999-876998399999999999999876
Q ss_pred CC--CCH-HHH-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 67--640-466-526998997407999437999999999998621736-897540199995669999999975
Q 000599 150 SA--TEL-TLQ-RAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLER 217 (1400)
Q Consensus 150 g~--~~l-~~~-k~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~-l~~~L~~~~l~~~~l~~i~~~~~~ 217 (1400)
+. ..+ +.. +.++|.+.+++.|++++||++|+++++.+++++|+. +.+++. ++.+.+++.|...+++
T Consensus 178 ~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~vG~~~~~p~l~--~Ld~~k~~ki~~~~~~ 248 (249)
T 2qk1_A 178 KDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIFGMNTFVKTLE--HLDNLKRKKIEETVKT 248 (249)
T ss_dssp CSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCSGGGHHHHH--HSCHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHH--HHHHHHHHHHHHHHHC
T ss_conf 7850668898799999999998669989999999999999999819787899999--8708899999998745
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=206.14 Aligned_cols=194 Identities=14% Similarity=0.144 Sum_probs=140.1
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHC-CCCCC
Q ss_conf 89999841099999227999999999998308923599989999999999831889479999999999999634-45430
Q 000599 1170 PQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALSLINEMLKNQ-KDVME 1248 (1400)
Q Consensus 1170 ~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~il~~Ll~~l~d~~~~vR~~aL~~L~~l~~~~-~~~~~ 1248 (1400)
..++..+.+.+ .+.|..|...|..++. .++..++..++..+.+. ...|+..+..|.++.... +..+.
T Consensus 859 ~~~~~~l~~~~---~~Vr~aAa~aLg~l~~--------~~~~~~lp~ll~~l~~~-~~~~~~~l~al~e~i~~~~~~~~~ 926 (1230)
T 1u6g_C 859 SVILEAFSSPS---EEVKSAASYALGSISV--------GNLPEYLPFVLQEITSQ-PKRQYLLLHSLKEIISSASVVGLK 926 (1230)
T ss_dssp HHHHHGGGCSC---HHHHHHHHHHHHHHHH--------HTHHHHHHHHHHHHHSC-GGGHHHHHHHHHHHHHSSCSTTTH
T ss_pred HHHHHHHCCCC---HHHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHCCCHHHHH
T ss_conf 99999847997---7899999999687752--------69998899999987266-032498899999998238766677
Q ss_pred CCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHH
Q ss_conf 01999999999994599277999999999999921391438974212003773245969999999998322988999442
Q 000599 1249 DSVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEELMAQL 1328 (1400)
Q Consensus 1249 ~~~e~~l~~ll~~~~d~~k~V~~aA~~~l~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~l~~~l 1328 (1400)
+|++.+++.|+....+....++..+.+|+..++.. .|..+++.+...+.+.+..+|..++..+..++...+ .....++
T Consensus 927 ~~~~~i~~~L~~~~~~~~~~~r~~~a~~lg~l~~~-~~~~l~p~l~~~l~~~~~~~R~~~~~~l~~~~~~~~-~~~~~~l 1004 (1230)
T 1u6g_C 927 PYVENIWALLLKHCECAEEGTRNVVAECLGKLTLI-DPETLLPRLKGYLISGSSYARSSVVTAVKFTISDHP-QPIDPLL 1004 (1230)
T ss_dssp HHHHHHHHHHTTCCCCSSTTHHHHHHHHHHHHHHS-SGGGTHHHHTTTSSSSCHHHHHHHHHHTGGGCCSSC-CTHHHHH
T ss_pred HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHCCCC-HHHHHHH
T ss_conf 66999999999873383044689999887566506-768888999998569978899999999999970682-3358989
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCHHHH
Q ss_conf 3569999998159987799999999999999851200112221117778
Q 000599 1329 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKAFLPYLERLNSTQL 1377 (1400)
Q Consensus 1329 ~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lGe~~~p~l~~L~~s~~ 1377 (1400)
+.++|.+.++++|.+.+||.+|.+|+-.+...-|+.+.+|++.+-+.-+
T Consensus 1005 ~~~~~~ll~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~l~~~lp~l~ 1053 (1230)
T 1u6g_C 1005 KNCIGDFLKTLEDPDLNVRRVALVTFNSAAHNKPSLIRDLLDTVLPHLY 1053 (1230)
T ss_dssp HHHSTTTHHHHSSSSTHHHHHHHHHHHHHHHHCGGGTGGGHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
T ss_conf 9989999986489858799999999999984285768977988989999
No 8
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=194.71 Aligned_cols=216 Identities=20% Similarity=0.235 Sum_probs=180.2
Q ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 8899883199999999999999999995213677586999999999652-048824389999999999998314567666
Q 000599 2 EEALELARAKDTKERMAGVERLHQLLEASRKSLTSAEVTSLVDCCLDLL-KDNNFKVSQGALQSLASAAVLSGEHFKLHF 80 (1400)
Q Consensus 2 e~~le~l~s~~Wk~R~~ale~L~~~l~~~~~~~~~~~~~~lv~~l~~~l-~DsN~~V~~~al~~l~~l~~~l~~~~~~~~ 80 (1400)
+++++.+.+++|++|.+|++.|..+++...+. ...++..++..+...+ +|+|.+|...++.+++.++..++..|.+|+
T Consensus 18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~-~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~~~ 96 (242)
T 2qk2_A 18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKL-ENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSNYA 96 (242)
T ss_dssp TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSB-CCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHHHH
T ss_pred HHHHHHHCCCCHHHHHHHHHHHHHHHCCCCCC-CCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 89996626387899999999999987128888-87779999999999845689899999999999999999866179899
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCC--HHHHH
Q ss_conf 5369999998379994699999999999999716358999985565314983479999999999997406764--04665
Q 000599 81 NALVPAVVERLGDAKQPVRDAARRLLLTLMEVSSPTIIVERAGSYAWTHRSWRVREEFARTVTSAIGLFSATE--LTLQR 158 (1400)
Q Consensus 81 ~~ilp~LieKLgD~K~~vre~a~~~L~~l~e~~~p~~V~e~l~~~~~~~Knpkvr~~~l~~L~~~i~~fg~~~--l~~~k 158 (1400)
..++|.|+++++|++..||+++..+|..+++..+++.+++.+.. .++|+||++|++++.||..++..++... .....
T Consensus 97 ~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~-~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l~ 175 (242)
T 2qk2_A 97 SACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVE-SLSNKNPSVKSETALFIARALTRTQPTALNKKLLK 175 (242)
T ss_dssp HHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHH-HTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHH-HHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHH
T ss_conf 99999999997689889999999999999972899999999999-88489839999999999999987188776689999
Q ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH-HHHHHHCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 26998997407999437999999999998621736-8975401999956699999999751788
Q 000599 159 AILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQ-FRDELHRHNLPNSMVKDINARLERIQPQ 221 (1400)
Q Consensus 159 ~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~-l~~~L~~~~l~~~~l~~i~~~~~~~~~~ 221 (1400)
.++|.+..+++|++++||++|..+++.++..+|+. +..++. ++++.+++.|...+++....
T Consensus 176 ~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~--~L~~~~~~~i~~~~~~a~v~ 237 (242)
T 2qk2_A 176 LLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLA--DVDPLKMAKIKECQEKAEIK 237 (242)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGT--TSCHHHHHHHHHHHHHCCCC
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHH--HCCHHHHHHHHHHHHHHHHH
T ss_conf 999999988469985899999999999999849999999998--52799999999999888873
No 9
>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=182.25 Aligned_cols=214 Identities=13% Similarity=0.163 Sum_probs=192.2
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 999984109999922799999999999830892359998999999999983-1889479999999999999634454300
Q 000599 1171 QILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVL-DDADSSVREVALSLINEMLKNQKDVMED 1249 (1400)
Q Consensus 1171 ~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~il~~Ll~~l-~d~~~~vR~~aL~~L~~l~~~~~~~~~~ 1249 (1400)
.++..+.+. +|.+|++|+..|..++..... .....+..++..|...+ +|.+..||..|+.+|..|++.++..|.+
T Consensus 19 ~l~~~l~s~---~w~~R~~a~~~L~~l~~~~~~-~~~~~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~ 94 (242)
T 2qk2_A 19 DFYDKLEEK---KWTLRKESLEVLEKLLTDHPK-LENGEYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN 94 (242)
T ss_dssp THHHHHTCS---SHHHHHHHHHHHHHHHHHCSS-BCCCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH
T ss_pred HHHHHHCCC---CHHHHHHHHHHHHHHHCCCCC-CCCCCHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999662638---789999999999998712888-8877799999999998456898999999999999999998661798
Q ss_pred CHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCHHH-HHHHH
Q ss_conf 19999999999945992779999999999999213914389742120037732459699999999983229889-99442
Q 000599 1250 SVEIVIEKLLHVTKDAVPKVSNEAEHCLTVVLSQYDPFRCLSVIVPLLVTEDEKTLVTCINCLTKLVGRLSQEE-LMAQL 1328 (1400)
Q Consensus 1250 ~~e~~l~~ll~~~~d~~k~V~~aA~~~l~~i~~~~~p~~~l~~l~~~l~s~~~~~~~~alk~l~~lv~~~~~~~-l~~~l 1328 (1400)
|++.+++.|+++++|+...|+.+|..++..++..+++..+++.+...+.+++|+++..++.++..++..++++. ...++
T Consensus 95 ~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~~~~~~~l 174 (242)
T 2qk2_A 95 YASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSLEAQQESIVESLSNKNPSVKSETALFIARALTRTQPTALNKKLL 174 (242)
T ss_dssp HHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGGGCCHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHH
T ss_conf 99999999999976898899999999999999728999999999998848983999999999999998718877668999
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH-HCCHHHHHHCHHHHHHHHHHHHHHH
Q ss_conf 35699999981599877999999999999998512-0011222111777878999998532
Q 000599 1329 PSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGK-AFLPYLERLNSTQLRLVTIYANRIS 1388 (1400)
Q Consensus 1329 ~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lGe-~~~p~l~~L~~s~~kLL~~yi~r~~ 1388 (1400)
+.++|.|.++++|++.+||++|..|+..++.++|+ .+.||++.|.+++++.|..|++++.
T Consensus 175 ~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~vg~~~~~~~l~~L~~~~~~~i~~~~~~a~ 235 (242)
T 2qk2_A 175 KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLMGDKAVTPLLADVDPLKMAKIKECQEKAE 235 (242)
T ss_dssp HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHHCHHHHGGGGTTSCHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_conf 9999999988469985899999999999999849999999998527999999999998888
No 10
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=181.66 Aligned_cols=799 Identities=13% Similarity=0.152 Sum_probs=454.9
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH----HHCH---HHHHHHHHH
Q ss_conf 488243899999999999983145676665369999998379994699999999999999----7163---589999855
Q 000599 52 DNNFKVSQGALQSLASAAVLSGEHFKLHFNALVPAVVERLGDAKQPVRDAARRLLLTLME----VSSP---TIIVERAGS 124 (1400)
Q Consensus 52 DsN~~V~~~al~~l~~l~~~l~~~~~~~~~~ilp~LieKLgD~K~~vre~a~~~L~~l~e----~~~p---~~V~e~l~~ 124 (1400)
++|..+...|-+.|..+-. .+.....+-.++..+.+....+|..|.-.|...+. ...+ ..+-+.++.
T Consensus 24 s~d~~~r~~Ae~~L~~~~~------~p~~~~~l~~il~~~~~~~~~vR~~a~~~Lkn~i~~~w~~~~~~~~~~ik~~ll~ 97 (852)
T 4fdd_A 24 SPDTTIQRTVQQKLEQLNQ------YPDFNNYLIFVLTKLKSEDEPTRSLSGLILKNNVKAHFQNFPNGVTDFIKSECLN 97 (852)
T ss_dssp CSCHHHHHHHHHHHHHHTT------SHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHTTTSGGGCCHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH------CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
T ss_conf 9498999999999999870------9988999999985668898679999999999989874477999999999999999
Q ss_pred HHHHCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCC
Q ss_conf 65314983479999999999997406764046652699899740799943799999999999862173689754019999
Q 000599 125 YAWTHRSWRVREEFARTVTSAIGLFSATELTLQRAILPPILQMLNDPNPGVREAAILCIEEMYTYAGPQFRDELHRHNLP 204 (1400)
Q Consensus 125 ~~~~~Knpkvr~~~l~~L~~~i~~fg~~~l~~~k~~ip~l~~~L~d~n~~VR~aA~~~l~~l~~~~G~~l~~~L~~~~l~ 204 (1400)
++...++.||.....++..+....+... . ..+++.+..++.+.+..+|+.|..++..++...++.+.... +.
T Consensus 98 -~l~~~~~~vr~~~a~~i~~ia~~~~~~~--w-p~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~----~~ 169 (852)
T 4fdd_A 98 -NIGDSSPLIRATVGILITTIASKGELQN--W-PDLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDV----LD 169 (852)
T ss_dssp -TTTCSSHHHHHHHHHHHHHHHHHTTTTT--C-TTHHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCS----SS
T ss_pred -HHCCCCHHHHHHHHHHHHHHHHHCCCCC--C-HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHH----HC
T ss_conf -8749989999999999999998648135--6-89999999987099989999999999999998578756343----13
Q ss_pred HHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHH
Q ss_conf 56699999999751788999899988610100101358988898322245544566899887545678755577477999
Q 000599 205 NSMVKDINARLERIQPQIRSSDGLPNTFAALEIKTASFNPKKSSPKAKSSTRETSLFGGEDITEKLIEPIKVYSEKELIR 284 (1400)
Q Consensus 205 ~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~r~~s~~~~r~~~~~~ss~~~~~~~g~~~~~~~~v~~i~i~s~~dl~~ 284 (1400)
..+..
T Consensus 170 ---------------------------------------------------------------------------~~~~~ 174 (852)
T 4fdd_A 170 ---------------------------------------------------------------------------RPLNI 174 (852)
T ss_dssp ---------------------------------------------------------------------------SCHHH
T ss_pred ---------------------------------------------------------------------------CHHHH
T ss_conf ---------------------------------------------------------------------------32999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99987510089989789999999999987059999501788699989989854165136999999999999999964528
Q 000599 285 EFEKIGSTLVPDKDWSVRIAAMQRVEGLVLGGAADHPCFRGLLKQLVGPLSTQLSDRRSSIVKQACHLLCFLSKELLGDF 364 (1400)
Q Consensus 285 ~l~ki~~~l~~~~dW~~R~~AL~~l~~ll~~~~~~~~~f~~~L~~L~~~l~~~l~Dlrs~Vv~~Ac~~l~~la~~L~~~f 364 (1400)
.+..+...| .+.+++.|..|++.+..++... ...+...+..+...+...+.|....|.+.+|.++..++......+
T Consensus 175 il~~l~~~l-~~~~~~vR~~A~~aL~~~~~~~---~~~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~ 250 (852)
T 4fdd_A 175 MIPKFLQFF-KHSSPKIRSHAVACVNQFIISR---TQALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL 250 (852)
T ss_dssp HHHHHTTTT-TCSSHHHHHHHHHHHHTTTTTT---CHHHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred HHHHHHHHH-CCCCHHHHHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_conf 999999985-6797899999999999998646---387998899999999987179977899999999999998577989
Q ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 99999999999998401147999999999999997279701289999996307998789999999999986199960000
Q 000599 365 EACAEMFIPVLFKLVVITVLVIAESSDNCIKTMLRNCKAVRVLPRIADCAKNDRNAVLRARCCEYALLVLEHWPDAPEIQ 444 (1400)
Q Consensus 365 ~~~a~~~lp~Ll~~~~~~k~vi~~sa~~al~~ii~~~~~~rll~~i~~~l~~~Kn~~~R~~~~~~L~~~L~~~~~~~~l~ 444 (1400)
.++...+++.+++.+.+....++ ..+++++..+.+.-.....+.
T Consensus 251 ~~~l~~l~~~l~~~~~~~~~~vr------------------------------------~~a~e~l~~l~~~~~~~~~~~ 294 (852)
T 4fdd_A 251 LPHMHNIVEYMLQRTQDQDENVA------------------------------------LEACEFWLTLAEQPICKDVLV 294 (852)
T ss_dssp GGGHHHHHHHHHHHHTCSSHHHH------------------------------------HHHHHHHHHHTTSTTHHHHHT
T ss_pred HHHHHHHHHHHHHHCCCCCHHHH------------------------------------HHHHHHHHHHHCCHHHHHHHH
T ss_conf 98899999999987069968999------------------------------------999999999860365798878
Q ss_pred CCHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCH
Q ss_conf 13899999999971899969999998207999999975301988655688732224765544655655667789986401
Q 000599 445 RSADLYEDLIRCCVADAMSERSRRLFSSFDPAIQRIINEEDGGMHRRHASPSVRERGAHLSFTSQTSTASNLSGYGTSAI 524 (1400)
Q Consensus 445 ~~~~~l~~~i~k~l~Da~~e~A~~l~~~l~~~~qk~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 524 (1400)
.++..+.+.+...+.+.+.+ ..++.-|+.-. ++++... .
T Consensus 295 ~~~~~l~p~ll~~l~~~e~d---~~~~~~d~~ed---~~~dd~~------~----------------------------- 333 (852)
T 4fdd_A 295 RHLPKLIPVLVNGMKYSDID---IILLKGDVEGG---SGGDDTI------S----------------------------- 333 (852)
T ss_dssp TTHHHHHHHHHHHTSCCHHH---HHHHHC---------------------C-----------------------------
T ss_pred HHHHHHHHHHHHHCCCCHHH---HHHHCCCCCCC---CCCCCCC------C-----------------------------
T ss_conf 88988999999875786767---99866984432---2245640------1-----------------------------
Q ss_pred HHCCCCCCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 10134555678987673033677532210000024677533000013579742044545678999766566678889999
Q 000599 525 VAMDRSSNLSSGASLSSGLLLSQAKSLNKATERSLESVLNASKQKVSAIESMLRGLEISDKQNPSTLRSSSLDLGVDPPS 604 (1400)
Q Consensus 525 ~~~~~~~~~~~~~~~~~~~l~~~~k~~~~~~~rs~~~v~~a~~~~~~~~~~~~~g~~~~~~~~~~~~~s~s~~~~~~~p~ 604 (1400)
. + ..++. +. .........
T Consensus 334 -----------~--~------~vr~~--------------a~----~~L~~la~~------------------------- 351 (852)
T 4fdd_A 334 -----------D--W------NLRKC--------------SA----AALDVLANV------------------------- 351 (852)
T ss_dssp -----------C--C------CHHHH--------------HH----HHHHHHHHH-------------------------
T ss_pred -----------C--C------HHHHH--------------HH----HHHHHHHHH-------------------------
T ss_conf -----------1--1------69999--------------99----999999874-------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999997568888887421123456688778888998765302431001368998887888665677887654578654
Q 000599 605 SRDPPFPAVVPASNDDTNAFMVESTTSGLNKGSNRNGGMVLSDIITQIQASKDSGKLSYHSNTESLSSLSSYSTRRGSEK 684 (1400)
Q Consensus 605 s~~~~~~~~~~~~~~~~~s~~~~s~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~r~~~~~ 684 (1400)
. + .
T Consensus 352 --------------------------~---------~-------------~----------------------------- 354 (852)
T 4fdd_A 352 --------------------------Y---------R-------------D----------------------------- 354 (852)
T ss_dssp --------------------------H---------G-------------G-----------------------------
T ss_pred --------------------------C---------C-------------H-----------------------------
T ss_conf --------------------------6---------1-------------8-----------------------------
Q ss_pred CCCCCCHHCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 44343100012366320379864311122233799877788988887532100026898776655565664211358877
Q 000599 685 LQERVSVEENDMREARRFVNPHIDRQYLDASYKDGNFRDSHNSYIPNFQRPLLRKHGTGRMSASRRKSFDDSQLQLGEMS 764 (1400)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 764 (1400)
. . .+ .+
T Consensus 355 ---------------~----------~-----------------~~----~l---------------------------- 360 (852)
T 4fdd_A 355 ---------------E----------L-----------------LP----HI---------------------------- 360 (852)
T ss_dssp ---------------G----------G-----------------HH----HH----------------------------
T ss_pred ---------------H----------H-----------------HH----HH----------------------------
T ss_conf ---------------7----------8-----------------99----99----------------------------
Q ss_pred CCCCCCCCHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Q ss_conf 66789899688864489999983567999999999984499865899998999999987520697247999999988755
Q 000599 765 NYTDGPASLSDALSEGLSPSSDWCARVSAFNYLRSLLQQGPKGIQEVIQNFEKVMKLFFQHLDDPHHKVAQAALSTLADI 844 (1400)
Q Consensus 765 ~~~~~~~~l~~~l~~~~~~s~~W~~R~egl~~L~~ll~~~~~~~~~v~~~l~~l~~~l~~~l~Dsn~kV~~~~Le~L~~l 844 (1400)
+ .-+.+.+ .+.+|..|..++..|..+.+.... .+...+..++..+...+.|+|..|-..+..++..+
T Consensus 361 --~---~~l~~~l-----~~~~~~~R~aa~~alg~i~~~~~~---~~~~~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l 427 (852)
T 4fdd_A 361 --L---PLLKELL-----FHHEWVVKESGILVLGAIAEGCMQ---GMIPYLPELIPHLIQCLSDKKALVRSITCWTLSRY 427 (852)
T ss_dssp --H---HHHHHHH-----TCSSHHHHHHHHHHHHHTTTTTHH---HHGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHT
T ss_pred --H---HHHHHHH-----CCCCHHHHHHHHHHHHHHHHCCHH---HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
T ss_conf --9---9999985-----599889999999999999863568---89987999999999871799889999999999999
Q ss_pred CCCCC-CCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCH------HHHHHHHHHHCCCCCCHHHHHHHHH
Q ss_conf 10169-8704589988999997307962555899999999986029902------1279999852137991257999999
Q 000599 845 IPSCR-KPFESYMERILPHVFSRLIDPKELVRQPCSTTLDIVSKTYSVD------SLLPALLRSLDEQRSPKAKLAVIEF 917 (1400)
Q Consensus 845 i~~~~-~~l~~~l~~ll~~L~~klgD~k~~vr~~~~~~L~~~~~~~~~~------~~l~~l~r~l~~~~~~k~k~~~L~~ 917 (1400)
....+ .....++..+++.|+..+.|....||..+..+|..+.+..+.. .+++.++..+.. ...+....+++.
T Consensus 428 ~~~~~~~~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~~ll~~L~~~l~~-~~~~~~~~~~~a 506 (852)
T 4fdd_A 428 AHWVVSQPPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLAYILDTLVFAFSK-YQHKNLLILYDA 506 (852)
T ss_dssp HHHHHHSCTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHH-CCHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HCHHHHHHHHHH
T ss_conf 9886110478999999999999985898889999999999999973676676799999999999988-374799999999
Q ss_pred HHHHHHHHHCCCCCCCCCCHHHHHHHHHCC-C--CCCCCHHHHHHHHHHHHHHHHCCCCHHHHHHHHCCCHHHHHHHHHH
Q ss_conf 999985520499998873017999996622-2--3589978999999999998510694789999840899999999999
Q 000599 918 AISSLNKHAMNSEGSGNLGILKLWLAKLTP-L--VHDKNTKLKEAAITCIISVYTHYDSTAVLNFILSLSVEEQNSLRRA 994 (1400)
Q Consensus 918 l~~~l~~~~~~~~~~~~~~~~~~~l~~i~~-l--~~dks~~vR~aA~~~l~~ly~~~~~~~~~~~l~~Lp~~~~~~l~~~ 994 (1400)
+.. +... +. ..+.........++.++. | +.|...++| .+..++..+....|.. +..++..+ ...+...
T Consensus 507 i~~-l~~~-~~-~~~~~~~~~~~l~p~l~~~~~~l~d~~~~~~-~~~~~l~~i~~~~g~~-~~~~~~~i----~~~~~~~ 577 (852)
T 4fdd_A 507 IGT-LADS-VG-HHLNKPEYIQMLMPPLIQKWNMLKDEDKDLF-PLLECLSSVATALQSG-FLPYCEPV----YQRCVNL 577 (852)
T ss_dssp HHH-HHHH-HG-GGGCCHHHHHHHHHHHHHHHHHSCTTCTTHH-HHHHHHHHHHHHHGGG-GHHHHHHH----HHHHHHH
T ss_pred HHH-HHHH-HH-HHHCCHHHHHHHHHHHHHHHHHCCCCCHHHH-HHHHHHHHHHHHHHHH-HHHHHHHH----HHHHHHH
T ss_conf 999-9997-42-4313678999988999999873330469999-9999999999997486-79889999----9999999
Q ss_pred HHHHCCHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHCCCC
Q ss_conf 86206135888999863111000357899999987888744444566777777778899877889987763000000126
Q 000599 995 LKQYTPRIEVDLMNYLQSKKERQRLKSSYDPSDVVGTSSEEGYAVASKKSHYFGRYSSGSIDSDGGRKWSSMQESNLMTG 1074 (1400)
Q Consensus 995 l~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1074 (1400)
+.. .+.........+..++.++ .+.. .. ..
T Consensus 578 l~~-----------~l~~~~~~~~~~~~~~~~d------~~~~----~~---------------------------~l-- 607 (852)
T 4fdd_A 578 VQK-----------TLAQAMLNNAQPDQYEAPD------KDFM----IV---------------------------AL-- 607 (852)
T ss_dssp HHH-----------HHHHHHHHHHCTTTSCCCC------THHH----HH---------------------------HH--
T ss_pred HHH-----------HHHHHHHHHCCCCCCCCCC------CHHH----HH---------------------------HH--
T ss_conf 999-----------9999987533886668876------1199----99---------------------------99--
Q ss_pred CCCCCCCCCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 67988871025777531047888677766667889988777888875565664222222346799999999666798998
Q 000599 1075 SMGHAMSDETKENLYQNFETGANADVSSKTKDLTGSNTYLEGFSTPRIDINGLRDHLEVSEGAGHNNEIPPELDLNHHKP 1154 (1400)
Q Consensus 1075 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1154 (1400)
.....+.+... +.+
T Consensus 608 --------~~l~~l~~~l~-----------------------------------------~~~----------------- 621 (852)
T 4fdd_A 608 --------DLLSGLAEGLG-----------------------------------------GNI----------------- 621 (852)
T ss_dssp --------HHHHHHHHHHG-----------------------------------------GGG-----------------
T ss_pred --------HHHHHHHHHHH-----------------------------------------HHH-----------------
T ss_conf --------99978999874-----------------------------------------769-----------------
Q ss_pred CCCCCCCCCCCCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
Q ss_conf 53223677878999789999841099999227999999999998308923599989999999999831889479999999
Q 000599 1155 SAIKTNSLTDAGPSIPQILHLMCNGNDGSPTSKHGALQQLIKASVANDHSIWTKYFNQILTAVLEVLDDADSSVREVALS 1234 (1400)
Q Consensus 1155 ~~~~~~~~~d~~~~i~~ll~~l~~~~~~~~~~r~~al~~L~~~l~~~~~~~~~~~f~~il~~Ll~~l~d~~~~vR~~aL~ 1234 (1400)
..+.. ....++-+++.+.+. .++.|..+...+..+....+ ..+..++..++..+...+.+.+..+|..|+.
T Consensus 622 ---~~~~~--~~~~~~~l~~~l~~~---~~~vr~~a~~~l~~l~~~~~-~~~~~~l~~~lp~l~~~l~~~~~~v~~~a~~ 692 (852)
T 4fdd_A 622 ---EQLVA--RSNILTLMYQCMQDK---MPEVRQSSFALLGDLTKACF-QHVKPCIADFMPILGTNLNPEFISVCNNATW 692 (852)
T ss_dssp ---HHHHH--TCCHHHHHHHHTTCS---SHHHHHHHHHHHHHHHHHCG-GGTGGGHHHHHHHHHHTCCTTSHHHHHHHHH
T ss_pred ---HHHHC--CCCHHHHHHHHHCCC---CHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf ---98836--771899999983899---84499999999999999816-8889879999999998769420689999999
Q ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHHHCC----H--HHHHHHHHHHCCC-CCHHHH
Q ss_conf 9999996344543001999999999994599--27799999999999992139----1--4389742120037-732459
Q 000599 1235 LINEMLKNQKDVMEDSVEIVIEKLLHVTKDA--VPKVSNEAEHCLTVVLSQYD----P--FRCLSVIVPLLVT-EDEKTL 1305 (1400)
Q Consensus 1235 ~L~~l~~~~~~~~~~~~e~~l~~ll~~~~d~--~k~V~~aA~~~l~~i~~~~~----p--~~~l~~l~~~l~s-~~~~~~ 1305 (1400)
.+.+|+...+..|.+|+..+++.++....++ .+.+...+..++..++..++ | .++++.....+.. ++...+
T Consensus 693 alg~i~~~~~~~~~p~~~~il~~L~~~l~~~~~~~~~~~~a~~~igrl~~~~~~~~~~~l~~~~~~~~~~l~~~~d~~e~ 772 (852)
T 4fdd_A 693 AIGEISIQMGIEMQPYIPMVLHQLVEIINRPNTPKTLLENTAITIGRLGYVCPQEVAPMLQQFIRPWCTSLRNIRDNEEK 772 (852)
T ss_dssp HHHHHHHHHGGGGGGGTHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHHTSCSSHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCHHHHCCCHHHHHHHHHHHHCCCCCCHHH
T ss_conf 99999997117678789999999999857998872077889999999998688976755899999999986536660799
Q ss_pred HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH-CCHHHHHHCHHHHHHHH-HH
Q ss_conf 69999999998322988999442356999999815998779999999999999985120-01122211177787899-99
Q 000599 1306 VTCINCLTKLVGRLSQEELMAQLPSFLPALFEAFGNQSADVRKTVVFCLVDIYIMLGKA-FLPYLERLNSTQLRLVT-IY 1383 (1400)
Q Consensus 1306 ~~alk~l~~lv~~~~~~~l~~~l~~liP~l~~~~~d~~seVRkaAv~~lv~~~~~lGe~-~~p~l~~L~~s~~kLL~-~y 1383 (1400)
..+++.+..++...| ..+..++..+..+ +..+.+...+.+..-..-+.++-..+|++ ...++..|.+..+.-|. .|
T Consensus 773 ~~a~~~l~~li~~~p-~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 850 (852)
T 4fdd_A 773 DSAFRGICTMISVNP-SGVIQDFIFFCDA-VASWINPKDDLRDMFCKILHGFKNQVGDENWRRFSDQFPLPLKERLAAFY 850 (852)
T ss_dssp HHHHHHHHHHHHHCG-GGTGGGHHHHHHH-HHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHH-HHHCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHCCHHHHHHHHHHH
T ss_conf 999999999998691-8688889999999-87068997899999999999998767720199998729999999999870
Done!