Citrus Sinensis ID: 000602
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 1398 | 2.2.26 [Sep-21-2011] | |||||||
| A7Z052 | 1124 | WD repeat-containing prot | yes | no | 0.462 | 0.574 | 0.233 | 2e-36 | |
| Q9NNW5 | 1121 | WD repeat-containing prot | yes | no | 0.465 | 0.580 | 0.234 | 3e-36 | |
| Q5RB07 | 1121 | WD repeat-containing prot | yes | no | 0.465 | 0.580 | 0.232 | 3e-35 | |
| Q99ME2 | 1125 | WD repeat-containing prot | yes | no | 0.462 | 0.574 | 0.234 | 2e-32 | |
| Q5XFW6 | 1125 | WD repeat-containing prot | yes | no | 0.460 | 0.572 | 0.242 | 6e-32 | |
| Q08924 | 1013 | Regulator of Ty1 transpos | yes | no | 0.189 | 0.261 | 0.241 | 1e-16 | |
| Q9USZ0 | 984 | Uncharacterized WD repeat | yes | no | 0.140 | 0.200 | 0.268 | 2e-12 | |
| Q09715 | 614 | Transcriptional repressor | no | no | 0.150 | 0.343 | 0.226 | 9e-08 | |
| Q3Y8L7 | 446 | Outer row dynein assembly | N/A | no | 0.056 | 0.177 | 0.351 | 1e-06 | |
| Q0P593 | 415 | Outer row dynein assembly | no | no | 0.143 | 0.481 | 0.243 | 2e-06 |
| >sp|A7Z052|WDR6_BOVIN WD repeat-containing protein 6 OS=Bos taurus GN=WDR6 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 155 bits (393), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 182/778 (23%), Positives = 320/778 (41%), Gaps = 132/778 (16%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + VA FG K
Sbjct: 31 LLAGEGPDVLVYTLDFGGHLRMMKRVQNLLGHYLIHGFRVRPEPNGDLDSEVMVAAFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRIVKISWGQGRFRELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D + +V +RC L S L GD + L + +G + N+++VW
Sbjct: 137 SVVLYDPVVGCSLQDVPCTDRCTLSSACLIGDTWKELTVVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + V R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPAAALTDDK-PVVPDRRVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ HP + F
Sbjct: 288 EILQAFRGHQGRGIRALAAHERQAWVITGGDDSGIRLWHLVG------RGHPGSGVFA-- 339
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
S K + S+ ++ + L + T+ G LY L D++ W +
Sbjct: 340 ---LSFK----------SHSRPGVLKAVTLAGSWRVLAVTDAGALY---LYDLEVKCWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G AL +G+G + +V ++TP + T
Sbjct: 384 LLE-DKRFQSYC--LLEAAPG-PEGF-GLCALANGEGRVKVV----PINTPTAAVDLTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL-CDPFSSVCYESSKTNNVFLVAE-- 574
G L ++ + + + P G + ++ P + + + ++
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 575 FSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHV--------- 623
+ +C ++F + L CGD RG+++L+P DLL D V V
Sbjct: 493 WHTC---------SAFLPPGDFLVCGDRRGSVLLYPSRPDLLKDLGVVSKVGAITSAPGA 543
Query: 624 ----------EVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673
E P++ HG V++++ + + +TG DG Y + +
Sbjct: 544 GSGEGEPSLAEWGPMSTLPSLHGKQGVTSVTC-----HGGYVYTTGRDGSY-YQLFVRGG 597
Query: 674 ESLEFIGMKQVKELSLIQSVS--AENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIP 731
+ + K + ++ + V A+ N + L GF + +F++W+ + K+ I
Sbjct: 598 QLQPVLRQKPCRGMNWVAGVRMVADGNMVIL-------GFHANEFVVWSPRSHEKLHIIN 650
Query: 732 CGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
CGG R S+ D E FAY+KD + ++R + L HGREI
Sbjct: 651 CGGGHR--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LRESLHGREI 702
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Enhances the STK11/LKB1-induced cell growth suppression activity. Bos taurus (taxid: 9913) |
| >sp|Q9NNW5|WDR6_HUMAN WD repeat-containing protein 6 OS=Homo sapiens GN=WDR6 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 155 bits (391), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 182/775 (23%), Positives = 322/775 (41%), Gaps = 124/775 (16%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + + VA+FG K
Sbjct: 31 LLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRVRPEPNGDLDLEAMVAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQGHFWELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D I+ EV +RC L S L GD + L I +G + N+++VW
Sbjct: 137 SVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALADNKPVAPDR-RISGHVGIIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ H + + G
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLW------------HLVGRGYRG- 334
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
+ F + S+ ++ + L L T+ G LY L D++ W +
Sbjct: 335 ---LGVSALCFKSR-----SRPGTLKAVTLAGSWRLLAVTDTGALY---LYDVEVKCWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G A+ +G+G + +V ++TP + T
Sbjct: 384 LLE-DKHFQSYC--LLEAAPG-PEGF-GLCAMANGEGRVKVV----PINTPTAAVDQTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL-CDPFSSVCYESSKTNNVFLVAE-- 574
G L ++ + + + P G + ++ P + + + ++
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 575 FSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLLNDK------------SVA 620
+ +C ++F + L CGD RG+++LFP LL D V
Sbjct: 493 WHTC---------SAFLPPGDFLVCGDRRGSVLLFPSRPGLLKDPGVGGKARAGAGAPVV 543
Query: 621 LHVEVSPLNYFKGAHGISTVSTL----SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESL 676
N F G +ST+ +L V + + + +TG DG Y + +D +
Sbjct: 544 GSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAY-YQLFVRDGQLQ 602
Query: 677 EFIGMKQVKELSLIQS--VSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734
+ K + ++ + + + + + L GF + +F++WN + K+ + CGG
Sbjct: 603 PVLRQKSCRGMNWLAGLRIVPDGSMVIL-------GFHANEFVVWNPRSHEKLHIVNCGG 655
Query: 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
R S+ D E FAY+KD + ++R + L HGREI
Sbjct: 656 GHR--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LREGLHGREI 704
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Enhances the STK11/LKB1-induced cell growth suppression activity. Homo sapiens (taxid: 9606) |
| >sp|Q5RB07|WDR6_PONAB WD repeat-containing protein 6 OS=Pongo abelii GN=WDR6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 152 bits (383), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 180/775 (23%), Positives = 320/775 (41%), Gaps = 124/775 (16%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G VL+Y L+ G +R + + H + F E + + VA+FG K
Sbjct: 31 LLAGEGPDVLVYSLDFGGHLRMIKRVQNLLGHYLIHGFRIRPEPNGDLDLEAMVAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQGHFRELWRSGLWNMS---------DWIWDARWLE---GNIALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D I+ EV +RC L S L GD + L I +G + N+++VW
Sbjct: 137 SVVLYDPVVGCILQEVPCTDRCTLSSACLIGDAWKELTIVAGAVSNQLLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALADNKPVAPDR-RISGHVGIIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397
+ L+ + H GRGI + ++T G DS I++ H + + G
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQAWVITGGDDSGIRLW------------HLVGRGYRG- 334
Query: 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457
+ F + S+ ++ + L L T+ G LY L D++ W +
Sbjct: 335 ---LGVSALCFKSR-----SRPGTLKAVTLAGSWRLLAVTDTGALY---LYDVEVKRWEQ 383
Query: 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS 517
+L+ + C LL P P G A+ +G+G + +V ++TP + T
Sbjct: 384 LLE-DKHFQSYC--LLEAAPG-PEGF-GLCAMANGEGRVKVV----PINTPTAAVDRTLF 434
Query: 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQL-CDPFSSVCYESSKTNNVFLVAE-- 574
G L ++ + + + P G + ++ P + + + ++
Sbjct: 435 PGKVHSL--SWALRGYEELLLLASGPGGVVACLEISAAPSGKAIFVKERCRYLLPPSKQR 492
Query: 575 FSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLLND------------KSVA 620
+ +C ++F + L C D RG+++LFP LL D
Sbjct: 493 WHTC---------SAFLPPGDFLVCSDRRGSVLLFPSRPGLLKDPGVGGKAGAGAGAPGV 543
Query: 621 LHVEVSPLNYFKGAHGISTVSTL----SVAKLRSNQTEIRSTGGDGCICYLEYDKDRESL 676
N F G +ST+ +L V + + + +TG DG Y + +D +
Sbjct: 544 GSGSSGGGNAFTGLGPVSTLPSLHGKQGVTSVTCHGGYVYTTGRDGAY-YQLFVRDSQLQ 602
Query: 677 EFIGMKQVKELSLIQS--VSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734
+ K + ++ + + + + + L GF + +F++WN + K+ + CGG
Sbjct: 603 PVLRQKSCRGMNWLAGLRIVPDGSMVIL-------GFHANEFVVWNPRSHEKLHIVNCGG 655
Query: 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
R S+ D E FAY+KD + ++R + L HGREI
Sbjct: 656 GHR--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCTRPHVI---LREGLHGREI 704
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Enhances the STK11/LKB1-induced cell growth suppression activity. Pongo abelii (taxid: 9601) |
| >sp|Q99ME2|WDR6_MOUSE WD repeat-containing protein 6 OS=Mus musculus GN=Wdr6 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 142 bits (358), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 183/780 (23%), Positives = 319/780 (40%), Gaps = 134/780 (17%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G +L+Y+L+ G +R + + H + F E +A+FG K
Sbjct: 31 LLAGEGPDLLVYNLDLGGHLRMVKRVQNLLGHFLIHGFRVRPEPKGDLDSEAMIAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+K+ ++++ S + N+S W++DV +++ GN ++A+G N
Sbjct: 91 GLKVVKVSWGQSHLRELWRSGLWNMS---------DWIWDVRWIE---GNVAVALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D ++ +V +RC L S L GD + L I +G + NE+++W
Sbjct: 137 SVVLYDPVIGCMLQDVPCTDRCTLSSACLVGDTWKELTIVAGAVSNELLIW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALTDNKPVAPDR-RVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS R+W+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRLWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG- 396
+ L+ + H GRGI + +VT G DS I++ H + + G
Sbjct: 288 EILQAFRGHRGRGIRAIATHERQAWVVTGGDDSGIRLW------------HLAGRGYPGL 335
Query: 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456
S K P S+ ++ + L + T+ G LY L D++ +W
Sbjct: 336 GVSSLSFKSP----------SRPGALKAVTLAGSWRVLAVTDVGSLY---LYDLEVKSWE 382
Query: 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTW 516
++L+ + LL P P G AL +G+G +V+VV ++TP
Sbjct: 383 QLLEDNR---FRSYCLLEAAPG-PEGF-GLCALANGEG---LVKVV-PINTP-------- 425
Query: 517 SAGIERQLLG------TYWCKSLGHRFIFTADPKGRLKLWQL-CDPFSSVCYESSKTNNV 569
+A +E++L ++ + + + P G + ++ P + + +
Sbjct: 426 TAAVEQKLFQGKVHSLSWALRGYEELLLLASGPGGVIACLEISAAPTGKAIFVKERCRYL 485
Query: 570 FLVAE--FSSCFGARIMCLDASF--EDEVLFCGDLRGNLVLFPLLRDLLNDK---SVALH 622
++ + +C ++F + L CGD RG+++LFP+ L S A+
Sbjct: 486 LPPSKQRWHTC---------SAFLPPGDFLVCGDRRGSVMLFPVRPCLFKKPGAGSKAIT 536
Query: 623 VEVSPLNYFKGAH------GISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESL 676
+P GI VSTL + T + GG YL Y R+S
Sbjct: 537 AAEAPGAGSGSGGSESVPTGIGPVSTLHSLHGKQGVTSVTCHGG-----YL-YSTGRDSS 590
Query: 677 EFIGMKQVKELSLIQSVSAENNSIDLASCNYAA-------GFASTDFIIWNLITEAKVVQ 729
F L + A +A GF + +F++W+ + K+
Sbjct: 591 YFQLFVHGGHLQPVLRQKACRGMNWVAGLRMVPDGSMVILGFHANEFVVWSPRSHEKLHI 650
Query: 730 IPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREI 789
+ CGG R S+ D E F Y+KD + ++R + L HGREI
Sbjct: 651 VNCGGGHR--SWAFSDT-EAAMAFTYLKDGEVMLYRALGGCIRPNVI---LREGLHGREI 704
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Mus musculus (taxid: 10090) |
| >sp|Q5XFW6|WDR6_RAT WD repeat-containing protein 6 OS=Rattus norvegicus GN=Wdr6 PE=1 SV=2 | Back alignment and function description |
|---|
Score = 140 bits (354), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 190/782 (24%), Positives = 318/782 (40%), Gaps = 138/782 (17%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97
LLAG G +L+Y+L+ G +R + + H + F E +A+FG K
Sbjct: 31 LLAGEGPDLLVYNLDFGGHLRMVKRVQNLLGHYLIHGFRVQPEPKGDLDSEAMIAVFGSK 90
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+++ ++++ S + N+S W++D +L+ GN +LA+G N
Sbjct: 91 GLRVVKISWGQSHLRELWRSGLWNMS---------DWIWDARWLE---GNVALALG--HN 136
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
S+ ++D ++ +V +RC L S L GD + L I +G + NE++VW
Sbjct: 137 SVVLYDPVIGCMLQDVPCTDRCTLSSACLIGDTWKELTIVAGAVSNELLVW--------- 187
Query: 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277
+ L D + A + R+ GH G IF + + L + S+D
Sbjct: 188 ----------------YPATALPDNKPVAPDR-RVSGHVGVIFSMSYLESKGLLATASED 230
Query: 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDG 337
RS RIW+V + ++ +G +GH+ARVW L ++++I+AGEDC C VW +G
Sbjct: 231 RSVRIWKV-GDLRVPGGRVQNIGHC--FGHSARVWQVKLLENYLISAGEDCVCLVWSHEG 287
Query: 338 KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV-HQFQAFLPGSLESHPEAKEFNG 396
+ L+ + H GRGI + ++T G DS I++ H PG S
Sbjct: 288 EILQAFRGHQGRGIRAIAAHERQTWVITGGDDSGIRLWHLVGRGYPGLGVSS-------- 339
Query: 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWN 456
S K P S+ ++ + L + T+ G LY L D++ W
Sbjct: 340 ----LSFKSP----------SRPGALKAVTLAGSWRVLAVTDVGGLY---LYDLEVKCWE 382
Query: 457 KILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF---- 512
++L+ + C LL P P G AL +G+G +V+VV ++TP +
Sbjct: 383 QLLEDNR-FQSYC--LLEAAPG-PEGF-GLCALANGEG---LVKVV-PINTPTAAVDQNL 433
Query: 513 ------TFTWSA-GIERQLLGTYWCKSLGHRFIFTADPKGR-LKLWQLCDPFSSVCYESS 564
+ +W+ G E LL + +A P G+ + + + C +
Sbjct: 434 FQGKVHSLSWALRGYEELLLLASGPGGVVACLEISAAPTGKAIFVKERCRYLLPPSKQRW 493
Query: 565 KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSV---AL 621
T + FL + L CGD RG+++LFP L V A+
Sbjct: 494 HTCSAFLP------------------PGDFLVCGDRRGSVLLFPARPCLFKKPGVGPKAI 535
Query: 622 HVEVSPLNYFKGAH------GISTVSTL-------SVAKLRSNQTEIRSTGGDGCICYLE 668
+P G+ VS+L V + + + STG DG L
Sbjct: 536 TAAEAPQAGSSSGGSESVVTGLGPVSSLHSLHGKQGVTSVTCHGGYVYSTGRDGSYYQLF 595
Query: 669 YDKDRESLEFIGMKQVKELSLIQSVS-AENNSIDLASCNYAAGFASTDFIIWNLITEAKV 727
R + K + ++ I + A + S+ GF + +F++W+ + K+
Sbjct: 596 VHGGRLQ-PVLRQKACRGMNWIAGLRMAPDGSM------VVLGFHANEFVVWSPRSHEKL 648
Query: 728 VQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGR 787
+ CGG R S+ D E FAY+KD + ++R + L HGR
Sbjct: 649 HIVNCGGGHR--SWAFSDT-EAAMAFAYLKDGDVMLYRALGGCIRPNVI---LREGLHGR 702
Query: 788 EI 789
EI
Sbjct: 703 EI 704
|
Enhances the STK11/LKB1-induced cell growth suppression activity. Rattus norvegicus (taxid: 10116) |
| >sp|Q08924|WDR6_YEAST Regulator of Ty1 transposition protein 10 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=RTT10 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 89.7 bits (221), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 85/352 (24%), Positives = 151/352 (42%), Gaps = 87/352 (24%)
Query: 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
++LAG G + +YD + TLI ++FH ++HG+S + +EG ++ +G
Sbjct: 19 YVLAGYGPFIHVYDYHSATLINKCRLFHYNKVHGLSLS----SEG--------KILAYGA 66
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+ V + EL L + E+ V+ + S W+ F N + +
Sbjct: 67 RSVTIVELEDVL------KKESLVDFERINS-----DWITGATF---SFDNLQIYLLTCY 112
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYS--MKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214
N + + D++ + + ER +LYS +K++G + + + +GT+ +I+W +
Sbjct: 113 NKVLICDLNCEVLFRKSLGGERSILYSGIIKVFGP--DKVYVNAGTVMGGVIIWDL---- 166
Query: 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274
+ + L+GHEGSIF + S+ G + S
Sbjct: 167 -----------------------------FSETKIHNLLGHEGSIFYVNLSNNGRYVASC 197
Query: 275 SDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCL--TDSFIITAGEDCTC 330
SDDRS R+W++ E G SV + H AR+W+ DS +I+ EDCTC
Sbjct: 198 SDDRSIRLWDL------------ETGKQLSVGWSHTARIWNLMFFDNDSKLISVSEDCTC 245
Query: 331 RVWG--------SDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
RVW ++ + + H+ + IW + VT+G D +K+
Sbjct: 246 RVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKDDEMIAVTSGNDGRLKL 297
|
Involved in regulation of Ty1 transposition. Plays also a role in the regulation of the retromer complex and is required for the recycling from endosomes of plasma membrane proteins like CAN1 and MUP1. Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292) |
| >sp|Q9USZ0|WDR6_SCHPO Uncharacterized WD repeat-containing protein C1306.02 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC1306.02 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 76.3 bits (186), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 69/257 (26%), Positives = 118/257 (45%), Gaps = 60/257 (23%)
Query: 130 RLSHWVFDVC-------FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
R+S W+F+ F V + N+ + S S W+++N+ + + LL+
Sbjct: 97 RISDWIFNAAELGEENKFCVVTSKNQVHLLSLSKGS---WEVTNT-----ISCEKTPLLF 148
Query: 183 --SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
++++ G+ + IAS + + +I VWK ++ N+P C +
Sbjct: 149 CATVQISGNEI---YIASASAFQQIYVWKFNY-------NNPPS-----------CVSID 187
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
LVGHEG+ F +++SS G L SVS+DR+ R+W + + S + G
Sbjct: 188 TY---------LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLWSIES-----SPFLIATG 233
Query: 301 SSVLYGHNARVWDCC-LTDSFIITAGEDCTCRVWGSDGKQLK---MIKEHIGRGIWRCLY 356
+GH+ARVW C L + I T ED T R+W + K L H G+ IW +
Sbjct: 234 ----FGHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLVV 289
Query: 357 DSLSSLLVTAGFDSAIK 373
S + ++ T G D +++
Sbjct: 290 SSANPIIYTGGNDGSVR 306
|
Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q09715|TUP11_SCHPO Transcriptional repressor tup11 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=tup11 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 60.5 bits (145), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 59/261 (22%), Positives = 104/261 (39%), Gaps = 50/261 (19%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH--SPER 178
N++LV +L S VC +K N + LA GC + + V+D+ + +H SP+
Sbjct: 303 NINLVHTLEHPSV----VCCVKFSNNGKYLATGC-NQAANVFDVQTGKKLFTLHEESPDP 357
Query: 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238
++ + + + +GT +I +W + + V
Sbjct: 358 SRDLYVRTIAFSPDGKYLVTGTEDRQIKLWDLSTQKV----------------------- 394
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
+ GHE I+ +++S G +VS S DR+AR+W+V IE
Sbjct: 395 ----------RYVFSGHEQDIYSLDFSHNGRFIVSGSGDRTARLWDVETGQCILKLEIEN 444
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
+++ N D FI D RVW G ++ ++ H ++ +
Sbjct: 445 GVTAIAISPN---------DQFIAVGSLDQIIRVWSVSGTLVERLEGH-KESVYSIAFSP 494
Query: 359 LSSLLVTAGFDSAIKVHQFQA 379
SS+L++ D IKV + QA
Sbjct: 495 DSSILLSGSLDKTIKVWELQA 515
|
Transcriptional repressor. Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812) |
| >sp|Q3Y8L7|WDR69_CHLRE Outer row dynein assembly protein 16 OS=Chlamydomonas reinhardtii GN=ODA16 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 57.0 bits (136), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 32/91 (35%), Positives = 49/91 (53%), Gaps = 12/91 (13%)
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304
T V LVGHEG I ++ ++ G++L++ S D++ R+W D D+ E + VL
Sbjct: 336 TGVCQHTLVGHEGEISKVAFNPQGTRLITASSDKTCRLW--------DCDTGECL--QVL 385
Query: 305 YGHNARVWDCCLT--DSFIITAGEDCTCRVW 333
GH ++ C FIIT +D TCR+W
Sbjct: 386 EGHTDEIFSCAFNYEGDFIITGSKDNTCRIW 416
|
Functions as a cargo-specific adapter between intraflagellar transport (IFT) particles and outer row dynein. Required for efficient dynein-mediated transport into the flagellar compartment. Chlamydomonas reinhardtii (taxid: 3055) |
| >sp|Q0P593|WDR69_BOVIN Outer row dynein assembly protein 16 homolog OS=Bos taurus GN=WDR69 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 55.8 bits (133), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 59/242 (24%), Positives = 109/242 (45%), Gaps = 42/242 (17%)
Query: 153 GCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210
G D + ++WD ++ E+H+ E R ++Y++ +N +IA+G+ +W V
Sbjct: 110 GSYDRTCKLWDTASGE---ELHTLEGHRNVVYAIAF--NNPYGDKIATGSFDKTCKLWSV 164
Query: 211 DWE--------HVAPLLN---SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259
+ H A ++ +P+ S D KL D Q + +F L GH I
Sbjct: 165 ETGKCYHTFRGHTAEIVCLSFNPQSTLVATGSMDTTA-KLWDIQ-SGEEVFTLTGHSAEI 222
Query: 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV------WD 313
+ +++ G+++++ S D + +WE +D+ +V L GH A + WD
Sbjct: 223 ISLSFNTSGNRIITGSFDHTVTVWE--------ADTGRKV--YTLIGHCAEISSAVFNWD 272
Query: 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372
C S I+T D TC++W + +GK + + H + C +D L+ TA D
Sbjct: 273 C----SLILTGSMDKTCKLWDAVNGKCVATLTGHDDEILDSC-FDYTGKLIATASADGTA 327
Query: 373 KV 374
++
Sbjct: 328 RI 329
|
May play a role in axonemal outer row dynein assembly. Bos taurus (taxid: 9913) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1398 | ||||||
| 359479974 | 1404 | PREDICTED: uncharacterized protein LOC10 | 0.983 | 0.979 | 0.613 | 0.0 | |
| 224064722 | 1455 | predicted protein [Populus trichocarpa] | 0.984 | 0.945 | 0.603 | 0.0 | |
| 297744046 | 1324 | unnamed protein product [Vitis vinifera] | 0.930 | 0.982 | 0.596 | 0.0 | |
| 255548301 | 1385 | nucleotide binding protein, putative [Ri | 0.977 | 0.987 | 0.614 | 0.0 | |
| 356571019 | 1377 | PREDICTED: uncharacterized protein LOC10 | 0.967 | 0.982 | 0.570 | 0.0 | |
| 297809977 | 1307 | transducin family protein [Arabidopsis l | 0.917 | 0.980 | 0.536 | 0.0 | |
| 449461733 | 1371 | PREDICTED: uncharacterized protein LOC10 | 0.965 | 0.984 | 0.537 | 0.0 | |
| 22328224 | 1308 | transducin/WD40 domain-containing protei | 0.915 | 0.978 | 0.533 | 0.0 | |
| 4558555 | 1216 | hypothetical protein [Arabidopsis thalia | 0.849 | 0.976 | 0.486 | 0.0 | |
| 449511518 | 1079 | PREDICTED: WD repeat-containing protein | 0.740 | 0.959 | 0.557 | 0.0 |
| >gi|359479974|ref|XP_002273071.2| PREDICTED: uncharacterized protein LOC100257191 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1743 bits (4514), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 863/1406 (61%), Positives = 1065/1406 (75%), Gaps = 31/1406 (2%)
Query: 7 SEWRLDVGQYLGEISALCFVHLPS--HLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
SEWRL G YLGEISALC +H P H SSLP+LLAG+GSQVLLYDLE+ ++R F V
Sbjct: 5 SEWRLHGGHYLGEISALCLIHAPPLPHFSSLPYLLAGTGSQVLLYDLESVKILRSFHVLE 64
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
GIR+HGI+C ++C EGSV ++ ++A+FGE+RVKLF L E+ P SQ +P+ C+ L+L
Sbjct: 65 GIRVHGIACRLVDCKEGSV---LSVKIAVFGERRVKLFNLRIEMVPESQDEPQVCLELTL 121
Query: 125 VQSLPRLSHWVFDVCFLK--VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ SLP+ SHWV DVCF K + + L +GCSDNS+ +WD+ SS ILEV +PERCLLY
Sbjct: 122 LHSLPKFSHWVLDVCFFKEDIATSSHCLVVGCSDNSVHLWDMLTSSSILEVRNPERCLLY 181
Query: 183 SMKLWGDNLEALRIASGTIYNE-IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241
SM+LWGD L+ L +ASGTIYNE IIVWK ++ P L S +H + SSS F
Sbjct: 182 SMRLWGDELQNLLVASGTIYNEVIIVWKAVPQNCTPSLGSSVKDHINSSSSFCNGFNHYS 241
Query: 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE--YWKDSDSIEEV 299
QQ+ A+N+ RL GHEGSIFR+ WSS GSKLVSVSDDRSARIW + AE +S I +
Sbjct: 242 QQYQALNICRLAGHEGSIFRLAWSSNGSKLVSVSDDRSARIWPIHAEREVSDNSGEIVDT 301
Query: 300 GSS--VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
GS+ VL+GHNAR+WDCC+ DS I+TAGEDCTCRVWG+DG QLKMIKEHIGRG+WRCLYD
Sbjct: 302 GSAGPVLFGHNARIWDCCILDSLIVTAGEDCTCRVWGTDGNQLKMIKEHIGRGVWRCLYD 361
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESH-PEAKEFNGRTEIFSIKIPNFSEQIRLTD 416
SLLVTAGFDSAIKVHQ QA LP + + E KE RTEIF++ IPN SE L D
Sbjct: 362 PKFSLLVTAGFDSAIKVHQLQASLPKAPQEQVAEVKELIDRTEIFTVCIPNSSEHTGLMD 421
Query: 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-N 475
SKSEYVR L T E++LY++TN GYLYH KL D V W ++++VSE +PI+CMDLLS N
Sbjct: 422 SKSEYVRSLRFTCENSLYVSTNRGYLYHAKLFDTGDVKWTELIRVSEEVPIVCMDLLSRN 481
Query: 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535
PK G++DW+A+GDGKGNMT+ +V D+ P++ T+TWSAGIERQLLGT+WCKSLG+
Sbjct: 482 GPKLSSGVEDWIAVGDGKGNMTVTGIVSDLCPPKVGLTYTWSAGIERQLLGTFWCKSLGY 541
Query: 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595
R+IFTADP+G+LKLW+LC+P S S+ +NNV L+AEF S F RIMCLDAS E+EVL
Sbjct: 542 RYIFTADPRGKLKLWRLCNPSQSASQNSAISNNVSLIAEFISSFNIRIMCLDASSEEEVL 601
Query: 596 FCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655
CGDLRGNL+L+PLLR +L S V+++PL YFKGAHGIS+VS +S+A SNQ EI
Sbjct: 602 ICGDLRGNLILYPLLRSILVGSSFGSEVKITPLTYFKGAHGISSVSGISIAGFVSNQIEI 661
Query: 656 RSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFAST 714
+STGGDGCICYLEY +DR++L+FIGMK+VKELSL+QSVS+ +S+D L S YA GFAST
Sbjct: 662 QSTGGDGCICYLEYRRDRQNLQFIGMKRVKELSLVQSVSSGADSVDDLTSSKYAIGFAST 721
Query: 715 DFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERK 774
DFIIWNLITE KVVQ+PCGGWRRPHSY+LGDVPE++NCFAYVKDE+I+IHR WI ERK
Sbjct: 722 DFIIWNLITETKVVQVPCGGWRRPHSYYLGDVPEMRNCFAYVKDEIIYIHRFWIPESERK 781
Query: 775 MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGF 834
+FP+NLH+QFHGRE+H+LCFVS + QVG N K ++SSWIATGCEDGTVRLTRYSPG
Sbjct: 782 IFPQNLHIQFHGREMHSLCFVSRDSQVGLNGKHDLSSRSSWIATGCEDGTVRLTRYSPGV 841
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
ENW SS+LLGEHVGGSAVRSIC VS+I+ I A N+ RQ+ + +ENPFLLISV
Sbjct: 842 ENWFSSQLLGEHVGGSAVRSICPVSKIHTIPADATNMPNGTQRQHATWDGRENPFLLISV 901
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
GAKRV+TSW+LR ID E + + ++ G S+SFQWLSTDMPTK S
Sbjct: 902 GAKRVITSWVLRTSTIDNKGEASDDGVQDKTGKGFP-------SMSFQWLSTDMPTKYSG 954
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFL 1014
K +D++ + I + +S+N +A++ S+ E +E + + +GD YE+DWRYLAVTAFL
Sbjct: 955 IRKKTEDLENIVGI-KKASSVNIDAESRSLFPERKEMQLRTCIGDMYENDWRYLAVTAFL 1013
Query: 1015 VKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLP 1074
VK P SR+TVCF+VV CSDATL+LRALILP RLWF+VA+LVP SSPVLALQH I+P+ P
Sbjct: 1014 VKDPVSRITVCFIVVGCSDATLSLRALILPSRLWFDVALLVPQSSPVLALQHAIIPLFQP 1073
Query: 1075 SKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGSQ 1134
S+E +QIG++Y ISG+TDGSIAFWD+T VE F+ + STLH EN IDCQKRPRTGRGSQ
Sbjct: 1074 SEEKIQIGNAYIAISGSTDGSIAFWDLTESVENFMLRASTLHTENSIDCQKRPRTGRGSQ 1133
Query: 1135 GGRWWRNLRHTRPNKESGSSIVSVRTE--GGVQNHDACGVSANVNDTENCTVEDGQ---I 1189
GGRWWR+L T K SG S VS+R E GV N+ ACG S+ +ND EN Q
Sbjct: 1134 GGRWWRSLGTTPKKKPSGGS-VSMRVEEGTGVLNYVACGTSSKLNDPENTPTACSQAMFT 1192
Query: 1190 ASCEPELNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGD 1249
AS E E+N +S+SE EI P+H+L++ HQSGVNCLH+S + +C S GF +Y++SGGD
Sbjct: 1193 ASLESEVNTDDSSSEICEISPLHVLSSIHQSGVNCLHISDMNHCQSFNNGFLYYLLSGGD 1252
Query: 1250 DQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFR 1309
DQA+HCL DL+LL +S+I A +V N ++ ED+K+L + +QN+NYRIRF + R
Sbjct: 1253 DQALHCLGFDLTLLPTSSESQIKAVNVENPTTKFEDIKNLNHC--KQNKNYRIRFLYHDR 1310
Query: 1310 ATSAHSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARAC 1369
SAH+SA+KGIWTDGTWVFSTGLDQR+R W L EH L + AHLV+SVPEPEAL ARAC
Sbjct: 1311 VASAHNSAVKGIWTDGTWVFSTGLDQRVRCWYLGEHGKLIEQAHLVISVPEPEALDARAC 1370
Query: 1370 GRNHYEIAVAGRGMQMVEFHASTDID 1395
GRNHY+IAVAGRGMQMVEF S D+D
Sbjct: 1371 GRNHYQIAVAGRGMQMVEFSVSPDMD 1396
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224064722|ref|XP_002301542.1| predicted protein [Populus trichocarpa] gi|222843268|gb|EEE80815.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 1712 bits (4434), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 884/1464 (60%), Positives = 1064/1464 (72%), Gaps = 88/1464 (6%)
Query: 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV 62
++ S W+L+ G YLGEISALCF+H PS+LSSLPFLLAG+GSQ+LLY+LE+G +I+ F+V
Sbjct: 5 QQKQSRWKLERGHYLGEISALCFLHPPSNLSSLPFLLAGTGSQLLLYNLESGKIIKSFEV 64
Query: 63 FHGIRLHGISCNFINCTEGSV-STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
F GIR+HGI+C+ + S V+F++A+FGEKR+KLF L+ Q + +
Sbjct: 65 FDGIRVHGITCSSSEEESSNFPSLTVSFKIAVFGEKRLKLFNLHI------QTPSQVNAD 118
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS------LAIGCSDNSIRVWDISNSSIILEVHS 175
L+L+ LP+ +HWV DV F K + S LAIGCSDNS+ +WD+S SS++L+V S
Sbjct: 119 LALIHCLPKFTHWVLDVSFFKNSAVSSSQEERQCLAIGCSDNSVHLWDMSVSSVVLQVQS 178
Query: 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235
PERCLLYSM+LWGD+LE LRIASGTI+NEIIVWKV V P L
Sbjct: 179 PERCLLYSMRLWGDSLETLRIASGTIFNEIIVWKV--VPVEPQLGGLPSTSLLEDDMYLS 236
Query: 236 CF-----KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290
C +L+ QQH + ++ RL+GHEGSIFRI WSS GSKLVSVSDDRSARIW VR E
Sbjct: 237 CSLPDSSQLRFQQHKSAHMCRLIGHEGSIFRIAWSSDGSKLVSVSDDRSARIWAVRDEL- 295
Query: 291 KDSDSIEE-VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGR 349
KDSD+ EE V VL+GHNARVWDCC+ DS I+TAGEDCTCRVW DGKQLKMIKEHIGR
Sbjct: 296 KDSDNREEEVAGPVLFGHNARVWDCCICDSVIVTAGEDCTCRVWRLDGKQLKMIKEHIGR 355
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409
GIWRCLYD SSLL+TAGFDS+IKVHQ A + SLE E+K F R EIF+ +IPN S
Sbjct: 356 GIWRCLYDPTSSLLITAGFDSSIKVHQVSASISQSLEGQIESKPFIDRMEIFTCRIPNSS 415
Query: 410 EQI------------------RLTDS---------------------------------- 417
E I L DS
Sbjct: 416 EYIGLMDRFSSRVERLGNGFYALVDSDGNAFISNVKPIKCWLTYFILLCAIDFIIVYTVY 475
Query: 418 -KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476
KSEYVRCLH T EDTLY+ATN+GYLYH +L V W K+ Q+SE +PI+CMDLLS +
Sbjct: 476 CKSEYVRCLHFTCEDTLYVATNNGYLYHARLHGTVDVKWTKLAQLSEEVPIVCMDLLSKK 535
Query: 477 -PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGH 535
PK+ G+DDWVALGDGKGNMTIVR++GDV TP++ FT TWSAG ERQLLGTYWCK+LG
Sbjct: 536 LPKHSNGVDDWVALGDGKGNMTIVRIMGDVFTPEVGFTVTWSAGKERQLLGTYWCKALGC 595
Query: 536 RFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVL 595
RFIFTADP+G LKLW+L DP S +T + L+AEF+SCFG RIMCLDASFEDEVL
Sbjct: 596 RFIFTADPRGILKLWRLSDPLPSGSLTYGRTFDASLIAEFTSCFGIRIMCLDASFEDEVL 655
Query: 596 FCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655
CGDLRGNLVLFPL + LL DK +++SPL YFKG+HGISTVS +SVAKL S+ EI
Sbjct: 656 VCGDLRGNLVLFPLSKGLLLDKPTLPEIKISPLCYFKGSHGISTVSNISVAKL-SDTIEI 714
Query: 656 RSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFAST 714
RSTGGDGCICYLEYD D+ LEFIGMKQVKELSL+QSVSA+NN +D LA+C YA GFAST
Sbjct: 715 RSTGGDGCICYLEYDPDQRGLEFIGMKQVKELSLVQSVSADNNCLDDLANCGYAIGFAST 774
Query: 715 DFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERK 774
DFIIWNLI+EAKVVQIPCGGWRRPHSY+LGDVPE +CFAYVKDE+I+IHR W+ E K
Sbjct: 775 DFIIWNLISEAKVVQIPCGGWRRPHSYYLGDVPEAMSCFAYVKDEIIYIHRKWVPEREWK 834
Query: 775 MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGF 834
+FP+NLH QFHGRE+H+LCFVS+N V AN ++SSWIATGCEDGTVRLTRY PG
Sbjct: 835 IFPQNLHTQFHGREMHSLCFVSKNTLVEANGNDFQFDRSSWIATGCEDGTVRLTRYIPGV 894
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
E W +SKLLGEHVGGSAVRSIC VS+++ I++ + N+S+ RQN A D +NPFLLISV
Sbjct: 895 EGWLTSKLLGEHVGGSAVRSICSVSKMHIIASDLTNLSDWTKRQNTCAGDMDNPFLLISV 954
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
GAKRVLTSWLLR R +D+ E +E + N N + S SS +SF+WLSTDMP +NSS
Sbjct: 955 GAKRVLTSWLLRDRNLDK-ENVFIEQEKMENENGYKPSSEVSSLMSFKWLSTDMPPRNSS 1013
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFL 1014
+ GK K + + IT+ + ++N + +G + E E +K DKYEDDWRYLAVTAFL
Sbjct: 1014 SRGKTKVAENIQGITKEL-NVNIDVTSGPLLLEKGEGYSKISYDDKYEDDWRYLAVTAFL 1072
Query: 1015 VKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLP 1074
VKC GSRLTVCFVVVACSDATLALRAL+LP RLWF+VA+LVPLSSPVL LQHVI+P LP
Sbjct: 1073 VKCAGSRLTVCFVVVACSDATLALRALVLPHRLWFDVALLVPLSSPVLTLQHVIIPSCLP 1132
Query: 1075 SKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGSQ 1134
+EN++IG+ Y VISGATDGSIAFWD+T ++E FVQ++STL+IE I+CQ RPRTGRGSQ
Sbjct: 1133 FEENIRIGNVYIVISGATDGSIAFWDLTDNIEAFVQRLSTLNIEKSINCQTRPRTGRGSQ 1192
Query: 1135 GGRWWRNLRHTRPNKESGSSIVSV----RTEGGVQNHDACGVSANVNDTENCTVEDGQIA 1190
GGRWWR L P G +V++ RT + NH S V+D ENCT+ Q
Sbjct: 1193 GGRWWRTLSSGVPKNRPGDGLVAIKAGERTNCNLANHPMNEASTAVSDAENCTIVCSQAV 1252
Query: 1191 SC---EPELNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSG 1247
EPE+N+VNS EIRP H+ NN HQSGVN LH+S I++ S+E GF F V+SG
Sbjct: 1253 DNTHHEPEVNSVNSLPGICEIRPFHVFNNVHQSGVNSLHISDIQDIQSSENGFAFSVISG 1312
Query: 1248 GDDQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNY 1307
GDDQA+HCL+ DLS LS G DS+++ +++IN + SE +K+ Q Q YRIRF +
Sbjct: 1313 GDDQALHCLKFDLSPLSTGKDSDVVTSNLINLFTSSESMKNNCCR-QSQTNKYRIRFLYH 1371
Query: 1308 FRATSAHSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSAR 1367
R SAHSSAIKG+WTDG WVFSTGLDQRIR WLL+++ L++ A+L++SVPEPEAL AR
Sbjct: 1372 DRIISAHSSAIKGVWTDGMWVFSTGLDQRIRCWLLQDNCKLTEQAYLIISVPEPEALHAR 1431
Query: 1368 ACGRNHYEIAVAGRGMQMVEFHAS 1391
A GRNHYEIAVAGRGMQMVEF AS
Sbjct: 1432 ARGRNHYEIAVAGRGMQMVEFSAS 1455
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297744046|emb|CBI37016.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 1677 bits (4342), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 835/1400 (59%), Positives = 1023/1400 (73%), Gaps = 99/1400 (7%)
Query: 7 SEWRLDVGQYLGEISALCFVHLPS--HLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
SEWRL G YLGEISALC +H P H SSLP+LLAG+GSQVLLYDLE+ ++R F V
Sbjct: 5 SEWRLHGGHYLGEISALCLIHAPPLPHFSSLPYLLAGTGSQVLLYDLESVKILRSFHVLE 64
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
GIR+HGI+C ++C EGSV ++ ++A+FGE+RVKLF L E+ P SQ +P+ C+ L+L
Sbjct: 65 GIRVHGIACRLVDCKEGSV---LSVKIAVFGERRVKLFNLRIEMVPESQDEPQVCLELTL 121
Query: 125 VQSLPRLSHWVFDVCFLK--VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ SLP+ SHWV DVCF K + + L +GCSDNS+ +WD+ SS ILEV +PERCLLY
Sbjct: 122 LHSLPKFSHWVLDVCFFKEDIATSSHCLVVGCSDNSVHLWDMLTSSSILEVRNPERCLLY 181
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242
SM+LWGD L+ L +ASGTIYNEIIVWK ++ P L S
Sbjct: 182 SMRLWGDELQNLLVASGTIYNEIIVWKAVPQNCTPSLGS--------------------S 221
Query: 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE--YWKDSDSIEEVG 300
Q+ A+N+ RL GHEGSIFR+ WSS GSKLVSVSDDRSARIW + AE +S I + G
Sbjct: 222 QYQALNICRLAGHEGSIFRLAWSSNGSKLVSVSDDRSARIWPIHAEREVSDNSGEIVDTG 281
Query: 301 SS--VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
S+ VL+GHNAR+WDCC+ DS I+TAGEDCTCRVWG+DG QLKMIKEHIGRG+WRCLYD
Sbjct: 282 SAGPVLFGHNARIWDCCILDSLIVTAGEDCTCRVWGTDGNQLKMIKEHIGRGVWRCLYDP 341
Query: 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESH-PEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
SLLVTAGFDSAIKVHQ QA LP + + E KE RTEIF++ IPN SE L DS
Sbjct: 342 KFSLLVTAGFDSAIKVHQLQASLPKAPQEQVAEVKELIDRTEIFTVCIPNSSEHTGLMDS 401
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-NE 476
KSEYVR L T E++LY++TN GYLYH KL D V W ++++VSE +PI+CMDLLS N
Sbjct: 402 KSEYVRSLRFTCENSLYVSTNRGYLYHAKLFDTGDVKWTELIRVSEEVPIVCMDLLSRNG 461
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
PK G++DW+A+GDGKGNMT+ +V D+ P++ T+TWSAGIERQLLGT+WCKSLG+R
Sbjct: 462 PKLSSGVEDWIAVGDGKGNMTVTGIVSDLCPPKVGLTYTWSAGIERQLLGTFWCKSLGYR 521
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
+IFTADP+G+LKLW+LC+P S S+ +NNV L+AEF S F RIMCLDAS E+EVL
Sbjct: 522 YIFTADPRGKLKLWRLCNPSQSASQNSAISNNVSLIAEFISSFNIRIMCLDASSEEEVLI 581
Query: 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656
CGDLRGNL+L+PLLR +L S V+++PL YFKGAHGIS+VS +S+A SNQ EI+
Sbjct: 582 CGDLRGNLILYPLLRSILVGSSFGSEVKITPLTYFKGAHGISSVSGISIAGFVSNQIEIQ 641
Query: 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSID-LASCNYAAGFASTD 715
STGGDGCICYLEY +DR++L+FIGMK+VKELSL+QSVS+ +S+D L S YA GFASTD
Sbjct: 642 STGGDGCICYLEYRRDRQNLQFIGMKRVKELSLVQSVSSGADSVDDLTSSKYAIGFASTD 701
Query: 716 FIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKM 775
FIIWNLITE KVVQ+PCGGWRRPHSY+LGDVPE++NCFAYVKDE+I+IHR WI ERK+
Sbjct: 702 FIIWNLITETKVVQVPCGGWRRPHSYYLGDVPEMRNCFAYVKDEIIYIHRFWIPESERKI 761
Query: 776 FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFE 835
FP+NLH+QFHGRE+H+LCFVS + QVG N K ++SSWIATGCEDGTVRLTRYSPG E
Sbjct: 762 FPQNLHIQFHGREMHSLCFVSRDSQVGLNGKHDLSSRSSWIATGCEDGTVRLTRYSPGVE 821
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NW SS+LLGEHVGGSAVRSIC VS+I+ I A N+ RQ+ + +ENPFLLISVG
Sbjct: 822 NWFSSQLLGEHVGGSAVRSICPVSKIHTIPADATNMPNGTQRQHATWDGRENPFLLISVG 881
Query: 896 AKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSST 955
AKRV+TSW+LR ID E + + ++ G S+SFQWLSTDMPTK S
Sbjct: 882 AKRVITSWVLRTSTIDNKGEASDDGVQDKTGKGFP-------SMSFQWLSTDMPTKYSGI 934
Query: 956 HGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLV 1015
K +D++ + I + +S+N +A++ S+ E +E + + +GD YE+DWRYLAVTAFLV
Sbjct: 935 RKKTEDLENIVGI-KKASSVNIDAESRSLFPERKEMQLRTCIGDMYENDWRYLAVTAFLV 993
Query: 1016 KCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPS 1075
K P SR+TVCF+VV CSDATL+LRALILP RLWF+VA+LVP SSPVLALQH I+P+ PS
Sbjct: 994 KDPVSRITVCFIVVGCSDATLSLRALILPSRLWFDVALLVPQSSPVLALQHAIIPLFQPS 1053
Query: 1076 KENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGSQG 1135
+E +QIG++Y ISG+TDGSIAFWD+T VE F+ + STLH EN IDCQKRPRTGRGSQG
Sbjct: 1054 EEKIQIGNAYIAISGSTDGSIAFWDLTESVENFMLRASTLHTENSIDCQKRPRTGRGSQG 1113
Query: 1136 GRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCEPE 1195
GRWWR+L T K SG S VS+R E G N D
Sbjct: 1114 GRWWRSLGTTPKKKPSGGS-VSMRVEEGTVNTD--------------------------- 1145
Query: 1196 LNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAIHC 1255
+S+SE EI P+H+L++ HQSGVNCLH+S + +C S GF +Y++SGGDDQA+HC
Sbjct: 1146 ----DSSSEICEISPLHVLSSIHQSGVNCLHISDMNHCQSFNNGFLYYLLSGGDDQALHC 1201
Query: 1256 LRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFRATSAHS 1315
L DL+LL +S+I A NYRIRF + R SAH+
Sbjct: 1202 LGFDLTLLPTSSESQIKA-------------------------NYRIRFLYHDRVASAHN 1236
Query: 1316 SAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARACGRNHYE 1375
SA+KGIWTDGTWVFSTGLDQR+R W L EH L + AHLV+SVPEPEAL ARACGRNHY+
Sbjct: 1237 SAVKGIWTDGTWVFSTGLDQRVRCWYLGEHGKLIEQAHLVISVPEPEALDARACGRNHYQ 1296
Query: 1376 IAVAGRGMQMVEFHASTDID 1395
IAVAGRGMQMVEF S D+D
Sbjct: 1297 IAVAGRGMQMVEFSVSPDMD 1316
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548301|ref|XP_002515207.1| nucleotide binding protein, putative [Ricinus communis] gi|223545687|gb|EEF47191.1| nucleotide binding protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 1671 bits (4328), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 857/1395 (61%), Positives = 1055/1395 (75%), Gaps = 28/1395 (2%)
Query: 7 SEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGI 66
S+WRL GQYLGEISALCF+HLPSH SSLP+LLAG+GSQ+LLY+LE +I FQVF GI
Sbjct: 9 SKWRLHSGQYLGEISALCFLHLPSHFSSLPYLLAGTGSQLLLYNLEEVNIIESFQVFQGI 68
Query: 67 RLHGISCNFINCTEGSVS-TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
R+HGI+C I+ ++GS S T + +VA+FGEKRVKLF N ++ N+ + V+L+LV
Sbjct: 69 RVHGITCESIDNSKGSSSSTLLASKVAIFGEKRVKLF--NLHIARNASHMH---VDLALV 123
Query: 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK 185
SLP+ +HW+ DV F+K N L IGC DNS+ +WDIS+SSIIL+V SPE+CLLYSM+
Sbjct: 124 HSLPKFNHWLLDVSFVK---ENDCLGIGCGDNSVCIWDISSSSIILQVQSPEKCLLYSMR 180
Query: 186 LWGDNLEALRIASGTIYNEII-VWKVDWEHVAPLLNSPEGNHA---HGSSSDFKCFKLQD 241
LWG NLE+LRIASGTI+NE+I +WKV + L S G+ + SS+ C
Sbjct: 181 LWGYNLESLRIASGTIFNEVISIWKVVPHEGSLTLRSALGDDKRLNNSSSTQLHC----- 235
Query: 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301
QQ+ AV++ RLVGHEGSIFR+ WSS GSKLVSVSDDRSARIW V AE + + E
Sbjct: 236 QQYKAVHISRLVGHEGSIFRLAWSSDGSKLVSVSDDRSARIWAVEAEQNDPDNQVMETAG 295
Query: 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS 361
++L+GH ARVWDCC+ DS I+TAGEDCTCRVWG DGKQ +MIKEHIGRG+WRCLYD SS
Sbjct: 296 TILFGHTARVWDCCIFDSLIVTAGEDCTCRVWGLDGKQHRMIKEHIGRGVWRCLYDQNSS 355
Query: 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEY 421
LL+TAGFDSA+KVHQ A P SL+ E +EF R +IF+ +IPN E DSKSEY
Sbjct: 356 LLLTAGFDSAVKVHQLPASFPQSLDGRSEREEFIDRIQIFTSRIPNSYEPTGFMDSKSEY 415
Query: 422 VRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLS-NEPKYP 480
VRCLH T +DTLYIATNHGYLYH KL V W K++QVSE +PI+CMDLLS N P++
Sbjct: 416 VRCLHFTCKDTLYIATNHGYLYHAKLFQTQEVKWTKLVQVSEKVPIVCMDLLSKNLPRHS 475
Query: 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFT 540
G+DDWVALGDGKGN+TIVRV G V T +FT TWSA ERQLLGTYWCK+LG+RFIFT
Sbjct: 476 YGVDDWVALGDGKGNLTIVRVAGVVCTLDNNFTITWSAEKERQLLGTYWCKALGNRFIFT 535
Query: 541 ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600
ADP+G LK+W+L DP V + S++ +V LVAEFSSCFG RIMCLDAS +EVL CGDL
Sbjct: 536 ADPRGVLKIWKLPDPLLPVPHISARMFDVSLVAEFSSCFGNRIMCLDASSSNEVLVCGDL 595
Query: 601 RGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGG 660
RGNLVL+PL + LL D ++SPL+YFKGAHGIS+VS++SV+ L S++TEI STG
Sbjct: 596 RGNLVLYPLTKGLLLDSPAGTVTKISPLSYFKGAHGISSVSSISVSTLSSSETEICSTGA 655
Query: 661 DGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSI-DLASCNYAAGFASTDFIIW 719
DGCICY EYD+D++SLEFIGMKQVKELSLIQSVSA NNS+ D A+ YA GFASTDFIIW
Sbjct: 656 DGCICYFEYDQDQKSLEFIGMKQVKELSLIQSVSANNNSLYDSANSGYAIGFASTDFIIW 715
Query: 720 NLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKN 779
NL TEAKV+QIPCGGWRRPHSY+LGD+PE+ CFAYVKDE+I+IHR WI ERK+FP +
Sbjct: 716 NLTTEAKVLQIPCGGWRRPHSYYLGDIPEMDTCFAYVKDEIIYIHRQWILESERKIFPHH 775
Query: 780 LHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSS 839
+H+QFHGRE+HTLCF+S N N K S +KSSWIATGCEDGTVRLTRY+PG E+W++
Sbjct: 776 MHVQFHGRELHTLCFISNNDANEENGKDSLFDKSSWIATGCEDGTVRLTRYNPGVESWTT 835
Query: 840 SKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRV 899
SKLLGEHVGGSAVRSICFVS+++ I + + N+S+ + N E+ NP LLISVGAKRV
Sbjct: 836 SKLLGEHVGGSAVRSICFVSKMHFIPSDMTNMSDWRYKLNAFEENCGNPLLLISVGAKRV 895
Query: 900 LTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHGKK 959
LTSWLLR + +D+ + V+ + ++NGN +G SSS+SF+WLSTDMP K SS H K
Sbjct: 896 LTSWLLRDKRLDKKGDPLVKQE-DKNGNGYMPCMGISSSMSFKWLSTDMPAKISSAHRKT 954
Query: 960 KDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPG 1019
K+ +K+ T+N+ASM + K S+ E E E+K L D EDDWRYLAVTAF VKC G
Sbjct: 955 KNRRKIGGNTKNVASMEPDTKFRSLIQEKGETESKGCLDDNDEDDWRYLAVTAFHVKCTG 1014
Query: 1020 SRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPSKENV 1079
S+LTVCF+VVACSDATLALRAL+LP RLWF+VA+LVPLSSPVLALQHVI+P HL S E
Sbjct: 1015 SKLTVCFIVVACSDATLALRALVLPHRLWFDVALLVPLSSPVLALQHVIIPAHLLSGETT 1074
Query: 1080 QIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGSQGGRWW 1139
IG++Y VISGATDGSIAFWD+T +E+F++Q+STL E I CQ RPRTGRGSQGGR W
Sbjct: 1075 YIGNAYIVISGATDGSIAFWDLTESIESFLRQLSTLDTEKLIHCQTRPRTGRGSQGGRRW 1134
Query: 1140 RNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQI---ASCEPEL 1196
++L+ K+ S+VS ++ G + + + + +D E+C + Q S EPE+
Sbjct: 1135 KSLKSNISKKKPADSLVS--SKAGKKT--SYNLVNDASDAESCRTDCAQAMHNVSLEPEV 1190
Query: 1197 NAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAIHCL 1256
N+V+ E EI P+H+L N HQSGVNCLHVS I++ +++ GF F V+SGGDDQA+HCL
Sbjct: 1191 NSVDPMREICEIHPLHVLCNVHQSGVNCLHVSDIQDSRNSDSGFLFCVISGGDDQALHCL 1250
Query: 1257 RVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFRATSAHSS 1316
+ + SLLS DSEI+ D +N ++SE K+ I + Q + Y IR + R TSAHSS
Sbjct: 1251 KFNKSLLSTHEDSEIVTPDTVNIIAKSESSKNSILVTECQIKKYGIRLSYHDRVTSAHSS 1310
Query: 1317 AIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARACGRNHYEI 1376
AIKG+WTDGTWVFSTGLDQR+R WLL+EH L++ HL++SVPEPE L ARAC RN YEI
Sbjct: 1311 AIKGVWTDGTWVFSTGLDQRVRCWLLKEHRKLTEQTHLIISVPEPETLHARACERNRYEI 1370
Query: 1377 AVAGRGMQMVEFHAS 1391
AVAGRGMQM+EF AS
Sbjct: 1371 AVAGRGMQMIEFLAS 1385
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571019|ref|XP_003553679.1| PREDICTED: uncharacterized protein LOC100780968 [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 1542 bits (3992), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 797/1396 (57%), Positives = 1015/1396 (72%), Gaps = 43/1396 (3%)
Query: 3 KKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQV 62
++ L+E + G YLG+ISALCF+ +P+ SLPFLLAG GS++ LYDLE +R F V
Sbjct: 12 EQRLTERSMHRGPYLGDISALCFLRIPN--LSLPFLLAGLGSEITLYDLELSKRVRSFSV 69
Query: 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNL 122
F G+R+HGI+ +F + +V +A+FGE RVKLF F+ + S PE L
Sbjct: 70 FEGVRVHGIASSF---PQENV-------IAVFGETRVKLFSFAFDSASRS---PE----L 112
Query: 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
+ V LP+ HWV DV FLK + LA+GCSDNS+ VWDISNS ++L+V SP RCLLY
Sbjct: 113 TFVHLLPKFGHWVLDVSFLK----SEFLAVGCSDNSVHVWDISNSKMVLKVQSPVRCLLY 168
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242
SM+LWG NLE RIASGTI+NEIIVWKV +H +S + NH H S S C +++DQ
Sbjct: 169 SMRLWGHNLEVFRIASGTIFNEIIVWKVAPQHNKS--SSHQENHYHQSISSSNCCQIKDQ 226
Query: 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302
+ A+++ +L+GHEGSIFRI WSSCGSKL+SVSDDRSAR+W V E ++ + +
Sbjct: 227 LYEAIHVCKLIGHEGSIFRIAWSSCGSKLISVSDDRSARVWAVATE--REHSLCHDPVAL 284
Query: 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSL 362
VL+GH ARVWDCC+ D+ I+T EDCTCR+WG DGKQL++IKEHIGRGIWRCLYD SSL
Sbjct: 285 VLFGHYARVWDCCMYDNLIVTVSEDCTCRIWGVDGKQLQVIKEHIGRGIWRCLYDPNSSL 344
Query: 363 LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYV 422
L+TAGFDSAIKVHQ +A LP LE+ A+ GRTE+FSI IPN DSKSEYV
Sbjct: 345 LITAGFDSAIKVHQPRASLPRGLEA---AQGSPGRTEMFSICIPNVLNHSGFMDSKSEYV 401
Query: 423 RCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP-KYPC 481
RCL + +D+LY+ATNHGYLY KLCD WN+++QVS G PIICMDLLS + + C
Sbjct: 402 RCLRFSCQDSLYVATNHGYLYLAKLCDTGGAQWNQLVQVSNGAPIICMDLLSKDSFELDC 461
Query: 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541
G +DW+A+GDGKGNMT++ V D TP + FTW A +ERQLLGTYWCKSLG R++FTA
Sbjct: 462 GAEDWIAIGDGKGNMTVIGVSNDDCTPTVRLCFTWPAEMERQLLGTYWCKSLGCRYVFTA 521
Query: 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601
DP+G LKLW+L DP S S ++NNV +AEF+S +G RIMCLDA E+EVL CGD+R
Sbjct: 522 DPRGTLKLWRLPDPSQSDLPSSMRSNNVSCIAEFTSNYGMRIMCLDACMEEEVLACGDVR 581
Query: 602 GNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD 661
GN+VLFPLL++L+ S A +++ P+N+FKG HGIS+VS++SV KL NQ EI STG D
Sbjct: 582 GNMVLFPLLKNLVLGISAAQEMKIPPVNHFKGVHGISSVSSVSVTKLGYNQIEICSTGAD 641
Query: 662 GCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNL 721
GCICYLE+DK+ ++L+F GMKQVK LSLI+ VS +NNS D S +YAAGFAS DFI+WNL
Sbjct: 642 GCICYLEFDKEMQNLQFTGMKQVKGLSLIEYVSVDNNSGDKLSSSYAAGFASVDFIVWNL 701
Query: 722 ITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLH 781
E KVV IPCGGWRRPHSY+LGD+PE+KNCFA++KDE+I+IHRHWI N + K++P++LH
Sbjct: 702 ANENKVVNIPCGGWRRPHSYYLGDIPEMKNCFAFIKDEMINIHRHWIHNRDGKVYPQSLH 761
Query: 782 MQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSK 841
MQFHGREIH+LCF+S++ VG N K + +KSSWIATGCEDGTVRLT YSPG ENWS+SK
Sbjct: 762 MQFHGREIHSLCFISDDVLVGDNYKCALFSKSSWIATGCEDGTVRLTWYSPGIENWSTSK 821
Query: 842 LLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLT 901
LLGEHVGGSAVRSIC VS++ IS+ NV + N E+ +NP LLISVGAKRVLT
Sbjct: 822 LLGEHVGGSAVRSICCVSKVYTISSDTGNVPDGRIELNAAVENNDNPTLLISVGAKRVLT 881
Query: 902 SWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHG-KKK 960
SW+L++R +D + + + N G D + SSS++FQWLSTDMP K S TH +
Sbjct: 882 SWILKNRRLDNKNDFVTDHQCNSEGVDDQFLSNFSSSMTFQWLSTDMPAKYSITHNTPEN 941
Query: 961 DMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPGS 1020
+++K+ I N+++ N++A+ GS+ SESR + DK+EDDWRYLAVTAFLVKC GS
Sbjct: 942 NVEKIVGIAENVSNTNSDARMGSLVSESR---TANLIRDKHEDDWRYLAVTAFLVKCSGS 998
Query: 1021 RLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHLPSKENVQ 1080
R++VCFVVVACSDATL LRAL+LP RLWF VA+LVPL +PVL+LQH+I P+ P KEN+Q
Sbjct: 999 RISVCFVVVACSDATLVLRALVLPFRLWFGVALLVPLLAPVLSLQHIIFPMCRPHKENIQ 1058
Query: 1081 IGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGSQGGRWWR 1140
+G+ Y VISG+TDGS+AFWD+T VE F+QQVS ++ENF DCQKRPRTGRGSQGGR WR
Sbjct: 1059 VGNVYIVISGSTDGSVAFWDLTDSVEAFMQQVSVCNVENFFDCQKRPRTGRGSQGGRQWR 1118
Query: 1141 NLRHTRPNKESGSSIVSVRTEGGVQ--NHDACGVSANVNDTENCTV---EDGQIASCEPE 1195
+L K +V+++ E Q ++ G S + + +C + + + E E
Sbjct: 1119 SLSRDLSKKRQDGKLVTLKAEDRTQSISYATQGTSYMPSSSADCEMVCSQSTHMVPPELE 1178
Query: 1196 LNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAIHC 1255
N + E EIRP+ L N HQSGVNCLHVS+IK T+ + +V+GGDDQA+H
Sbjct: 1179 SKTDNLSVEICEIRPLCRLQNIHQSGVNCLHVSEIKGGQITDNCHVYSIVTGGDDQALHH 1238
Query: 1256 LRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFRATSAHS 1315
L V+LS S I+ D+I+ S E K + Q Q++NY+I+F NY + SAHS
Sbjct: 1239 LMVELSPKSINSSEGILIPDIIHFVSVPEHGKDINL--QSQSKNYKIKFLNYQKLPSAHS 1296
Query: 1316 SAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARACGRNHYE 1375
S++KG+WTDG+WVFSTGLDQRIR W L + S L +H++L+VSVPEPEALSARACGRNHY+
Sbjct: 1297 SSVKGVWTDGSWVFSTGLDQRIRCWHLLQ-SKLIEHSYLIVSVPEPEALSARACGRNHYQ 1355
Query: 1376 IAVAGRGMQMVEFHAS 1391
IAVAGRGMQ++EF S
Sbjct: 1356 IAVAGRGMQIIEFSES 1371
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297809977|ref|XP_002872872.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] gi|297318709|gb|EFH49131.1| transducin family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 1443 bits (3736), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 748/1395 (53%), Positives = 961/1395 (68%), Gaps = 113/1395 (8%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ FI T+ R T+++ +FGEK+VK+F L EL+ S E VNL +
Sbjct: 69 VHGTVCSSSFIRSTD-----RYTYKLVIFGEKKVKIFSLIVELASGSG---EISVNLEIF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 DSLPRLSNWVFDVCFLQDSTGSLGDEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ + +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWRT------VGFDGDNADHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A + RL GHEGSIFRI WS GSKLVSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASPMLRLTGHEGSIFRIVWSLDGSKLVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DSFI+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSFIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420
SLLVTAGFDSAIKVHQ +L + E FS +PN +E LTDSKSE
Sbjct: 331 SLLVTAGFDSAIKVHQLHNRGSETLLDAVGVLNSPDKVEYFSTCLPNLTEHTGLTDSKSE 390
Query: 421 YVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EPKY 479
YVRC+ LT EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S + +
Sbjct: 391 YVRCMQLTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKVRE 450
Query: 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539
C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+RF+F
Sbjct: 451 SCALDDWVALGDGKGNMTIVRVIGDIYNPHAGLNQSWKASPERQLLGAFWCKSLGYRFVF 510
Query: 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599
+ +P+G LKLW+L P S +++T +V L+AEFSSCFG RIMC+DAS EDEV+ CGD
Sbjct: 511 SCNPRGLLKLWKLSGPSESAASSAAETYHVSLLAEFSSCFGKRIMCVDASVEDEVILCGD 570
Query: 600 LRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659
LRGN+ LFPL +D+LN SV+ +++ L YFKGAHGIS+VS+LSVA+L SN+ EI STG
Sbjct: 571 LRGNITLFPLSKDMLNGVSVSSELKIPSLKYFKGAHGISSVSSLSVARLTSNKAEICSTG 630
Query: 660 GDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDFII 718
DGCICY EYD++R++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDFI+
Sbjct: 631 ADGCICYFEYDRERQTLEFMGLKQLKELNLVQSVCQGVQFSKDHPNNDYAAGFASTDFIL 690
Query: 719 WNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPK 778
WNL EAKV QI CGGWRRPHS++LG++PE +NCFAY+KD+VIHIHRHW+ + K+FP
Sbjct: 691 WNLTAEAKVTQITCGGWRRPHSFYLGEIPEWQNCFAYLKDDVIHIHRHWVVGKKTKVFPL 750
Query: 779 NLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWS 838
NLH QFHGRE+H+LCF+S + + G + K + ++SSWIATGCEDG+VRLTRY F NWS
Sbjct: 751 NLHTQFHGRELHSLCFISADTKAGFDESKLS-DRSSWIATGCEDGSVRLTRYVSEFGNWS 809
Query: 839 SSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKR 898
+S+LLGEHVGGSAVRS+C VS ++ IS+ + NV ++ Q+ +D E+P LLISVGAKR
Sbjct: 810 TSELLGEHVGGSAVRSVCCVSNMHMISSDMPNV-PDVCEQDSAVDDSESPCLLISVGAKR 868
Query: 899 VLTSWLLRHRGIDEMEETTV-ESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHG 957
V++SWLLR+ ++ E+ + ++ +NR +++ SS++FQWL+TDMPTK S G
Sbjct: 869 VVSSWLLRNGRQNKKGESCISDNGHNRASSEV-------SSVTFQWLATDMPTK-SRPCG 920
Query: 958 KKKDMKKVDHI----TRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
K + K+D + T NI + +N ERE YEDDWRY+A TAF
Sbjct: 921 KTEKSPKLDGVDEDTTANITKLGSNTY--------HERE-------NYEDDWRYMAATAF 965
Query: 1014 LVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHL 1073
LVKC GSRLT+CF+ VACSDA+L LRAL+LP RLWF+VA LVPL SPVL+LQH ++ +H
Sbjct: 966 LVKCVGSRLTICFIAVACSDASLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVHLHP 1025
Query: 1074 PSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGS 1133
P + N Y +ISGATDGSIAFWDVT VE FV+QVS++HIE FIDCQ RPRTGRGS
Sbjct: 1026 PHEGNTSSSDVYLLISGATDGSIAFWDVTKCVEAFVKQVSSIHIEKFIDCQLRPRTGRGS 1085
Query: 1134 QGGRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCE 1193
QGG+ W+ L GS I E +A S + + +
Sbjct: 1086 QGGKKWKLL---------GSKISKKPQENSNSVGEAAATSLELTNG---------VPQEN 1127
Query: 1194 PELNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAI 1253
E +S ETSEI+P H++ NAHQSGVNCL+VS+ + S F V+SGGDDQA+
Sbjct: 1128 HEYEGADSPPETSEIKPSHVVKNAHQSGVNCLYVSRSSSSPSNGNSLMFNVISGGDDQAL 1187
Query: 1254 HCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFRATSA 1313
HCL ++ S P + +++++ N Q +YRIR + SA
Sbjct: 1188 HCLSFNILSSSNSPARK---SEIMDLN---------------QTPSYRIRLTDRGGIASA 1229
Query: 1314 HSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARACGRNH 1373
HSSAIKG+W D WVFSTGLDQR+R W L++ L +HAHLV+SVPEPEAL A+A N
Sbjct: 1230 HSSAIKGVWMDVNWVFSTGLDQRVRCWFLDKDGKLIEHAHLVISVPEPEALDAKAIDENR 1289
Query: 1374 YEIAVAGRGMQMVEF 1388
Y+IAVAGRG+QMVEF
Sbjct: 1290 YQIAVAGRGIQMVEF 1304
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449461733|ref|XP_004148596.1| PREDICTED: uncharacterized protein LOC101207681 [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1437 bits (3719), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 756/1407 (53%), Positives = 977/1407 (69%), Gaps = 57/1407 (4%)
Query: 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ 61
GK++ S+W L GQYLGEISALCF+HLP +SS P LLAGSGS+V+ Y+LE+G ++ F+
Sbjct: 3 GKEEQSDWHLHSGQYLGEISALCFLHLPPQISSFPILLAGSGSEVMAYNLESGKMLESFR 62
Query: 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
VF GIR+HGIS +N E S T++ F + +FGEKRVKL+ ++ E+ E CVN
Sbjct: 63 VFEGIRVHGISSISLNFNEASSFTKLDFILVVFGEKRVKLYRISVEVIA------EVCVN 116
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGCSDNSIRVWDISNSSIILEVHSPERC 179
+ L+ SLPR +HWV D CFLKV + +AIGC DNS+ VWD S +IL+V SPERC
Sbjct: 117 MVLLCSLPRFNHWVLDACFLKVPIHDNCGYIAIGCGDNSVHVWDTCESRMILKVESPERC 176
Query: 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239
LLYSM+LWGD+++ +R+ASGTI+NEIIVW+V P +GN + K +
Sbjct: 177 LLYSMRLWGDDIDTIRVASGTIFNEIIVWEV-----VP----SKGNKKNLDEKSHKTHDI 227
Query: 240 Q--DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297
Q Q+ AV+ RLV HEGSIFRI WSS G KLVSVSDDRSARIW + A+ D+D+
Sbjct: 228 QFHHMQYEAVHKSRLVAHEGSIFRIAWSSDGFKLVSVSDDRSARIWSLNAK-GSDADNPG 286
Query: 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
EV VL+GHNARVWDCC+ DS IITA EDCTCR WG DG+QL+MIKEHIGRG+WRCLYD
Sbjct: 287 EV--IVLFGHNARVWDCCIYDSLIITASEDCTCRAWGIDGQQLEMIKEHIGRGVWRCLYD 344
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
+S+LL+TAGFDS+IKVH+ L G+ E + + + E+F+ IP+ + R DS
Sbjct: 345 PISNLLITAGFDSSIKVHRLNTSLSGTSNEPAENADRSMKREVFTTCIPDSLDHNRHMDS 404
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477
KSEYVRCL +SE T+Y+ATNHGYLYH L D V W K++ V E + IICMDLL+ P
Sbjct: 405 KSEYVRCLRFSSERTIYVATNHGYLYHATLSDSMGVMWTKLIHVGEEVQIICMDLLACSP 464
Query: 478 -KYPCGIDDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAGIERQLLGTYWCKSLG 534
+ G +DW+ALGD +G MT+++V+ D HTP +S FTWSA ERQLLGT+WCKSLG
Sbjct: 465 FEVSGGAEDWIALGDSQGRMTVLKVLHDSNAHTPDIS--FTWSAEKERQLLGTFWCKSLG 522
Query: 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594
R+IFTADP+G LKLW+L D S+ ++ K N LVAE+ SCFG RIMCLD S E+E+
Sbjct: 523 FRYIFTADPRGALKLWRLADHVSA--SQNGKNYNPSLVAEYISCFGLRIMCLDVSCEEEI 580
Query: 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654
+ CGD+RGNL+LFPL +DLL + + V++ P YFKGAHGISTV+++ VA+L S QTE
Sbjct: 581 VVCGDVRGNLILFPLSKDLLLETPITTGVKIIPTCYFKGAHGISTVTSVVVARLESCQTE 640
Query: 655 IRSTGGDGCICYLEYDK--DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFA 712
+ STG DGCIC++EY K DR+ LEFIGMKQVK L+ +QS+ + S+DL S YA GFA
Sbjct: 641 LHSTGADGCICHIEYVKVNDRKVLEFIGMKQVKALTSVQSLFYDQTSLDLTSNLYATGFA 700
Query: 713 STDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGE 772
S DFIIWNL TEAKV+QI CGGWRRP+S +LGD+PE+KNCFAYVKDE I+IHRHW+S E
Sbjct: 701 SADFIIWNLTTEAKVLQIQCGGWRRPYSNYLGDIPELKNCFAYVKDETIYIHRHWVSGSE 760
Query: 773 RKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSP 832
RK+FP+NLH+QFHGRE+H+LCFV E A+ K ++S WI TGCEDGTVR+TRY+
Sbjct: 761 RKVFPQNLHVQFHGRELHSLCFVPE-----ADNKLGISSRSCWIVTGCEDGTVRMTRYTR 815
Query: 833 GFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLI 892
G +W +S LLGEHVGGSAVRS+C++S ++ IS+ + + Q +D+E+P LLI
Sbjct: 816 GINSWPASNLLGEHVGGSAVRSLCYISNVHLISSNGTITPDAKDTQESDLDDREDPVLLI 875
Query: 893 SVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKN 952
S GAKRVLTSWL +HR ++++ + +N G+ E S G +S+SF+WLSTDMPTKN
Sbjct: 876 SAGAKRVLTSWLQKHRKLEKIANACLH--HNAKGS-CEPS-GFPTSISFKWLSTDMPTKN 931
Query: 953 SSTHGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTA 1012
S++ ++ + +S+N +A++ S+ E E K+ +KYEDDWRY+AVT
Sbjct: 932 STS--RRNSFNTMQDEATTGSSINPDAESKSL-QEKEELSLKSCSVEKYEDDWRYMAVTG 988
Query: 1013 FLVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMP-I 1071
FLVK SR TVCF+VVACSDATL+LRALILP RLWF+VA LVP+ SPVL LQH++ P
Sbjct: 989 FLVKHFNSRFTVCFIVVACSDATLSLRALILPHRLWFDVASLVPVGSPVLTLQHIVFPKF 1048
Query: 1072 HLPSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGR 1131
H +G+ Y VISGATDGSIAFWD+TG++E F++++S+L E FID QKRPRTGR
Sbjct: 1049 HSDGGGETLLGNVYIVISGATDGSIAFWDLTGNIEAFMKRLSSLRQEKFIDFQKRPRTGR 1108
Query: 1132 GSQGGRWWRNLRHTRPNKESGSSIVSV---RTEGGVQNHDACGVSANVNDTENCTVEDGQ 1188
GSQGGR +L ++ S ++ T +QN C S+ VN +E
Sbjct: 1109 GSQGGRRRTSLSTVTKSRSSKKMVIKKDEDDTNSSIQNQVPCESSSKVNISEANAAGSQP 1168
Query: 1189 IASCEPE--LNAVNSTSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVS 1246
S E L+ N +SE +I+PIH++ NAHQSGVNCLHV+ + + + ++V+S
Sbjct: 1169 DCSTSSELILSTSNYSSEMCDIQPIHVVTNAHQSGVNCLHVAAVNSSECVNNCYLYHVIS 1228
Query: 1247 GGDDQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYN 1306
GGDDQA+ CL DLSLLS S + I++ ++ N Y RF
Sbjct: 1229 GGDDQALQCLTFDLSLLSENTSS--------EKMESESECAKFIFHSEDHNHKYLARFLR 1280
Query: 1307 YFRATSAHSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSA 1366
+ SAHSSAIKGIWTDG WVFSTGLDQRIR W LE L ++A+ +++VPEPEA+ A
Sbjct: 1281 PHKIESAHSSAIKGIWTDGIWVFSTGLDQRIRCWKLEAQGKLVEYAYSIITVPEPEAIDA 1340
Query: 1367 RACGRNHYEIAVAGRGMQMVEFHASTD 1393
RAC RNHY+IAVAGRGMQ++EF S D
Sbjct: 1341 RACDRNHYQIAVAGRGMQIIEFSTSCD 1367
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|22328224|ref|NP_192095.2| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|30678983|ref|NP_849536.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|19699003|gb|AAL91237.1| unknown protein [Arabidopsis thaliana] gi|32306503|gb|AAP78935.1| At4g01860 [Arabidopsis thaliana] gi|332656686|gb|AEE82086.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] gi|332656687|gb|AEE82087.1| transducin/WD40 domain-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1425 bits (3690), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 746/1399 (53%), Positives = 969/1399 (69%), Gaps = 119/1399 (8%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ F++ E R T+++ +FGEK+VK+F L EL+ +S E VNL
Sbjct: 69 VHGTVCSKSFVHSAE-----RYTYKLVIFGEKKVKIFSLIVELASSSG---EISVNLENF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 ESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ A L+ +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWR------AVGLDGDNVDHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDSK 418
SLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDSK
Sbjct: 331 SLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSK 388
Query: 419 SEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EP 477
SEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 389 SEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKV 448
Query: 478 KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+RF
Sbjct: 449 RESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYRF 508
Query: 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597
+F+ +P+G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+ C
Sbjct: 509 VFSCNPRGLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVILC 564
Query: 598 GDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS 657
GDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI S
Sbjct: 565 GDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICS 624
Query: 658 TGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDF 716
TG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDF
Sbjct: 625 TGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDF 684
Query: 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMF 776
I+WNL E KV QI CGGWRRPHS++LG++PE +NCFAYVKD+VIHIHRHW+ + K+F
Sbjct: 685 ILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKDDVIHIHRHWVGGQKTKVF 744
Query: 777 PKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL-NKSSWIATGCEDGTVRLTRYSPGFE 835
P NLH QFHGRE+H+LCF+S + + G + ++S + ++SSWIATGCEDG+VRL+RY+ F
Sbjct: 745 PLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEFG 804
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + + Q+ +D E+P LLISVG
Sbjct: 805 NWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCD-QDYAVDDCESPRLLISVG 863
Query: 896 AKRVLTSWLLRH-RGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
AKRV+TSWLLR+ R + E ++ +NR +++ S ++FQWL+TDMPTK
Sbjct: 864 AKRVVTSWLLRNGRHKKKGESCISDNGHNRASSEV-------SPVTFQWLATDMPTKYRP 916
Query: 955 THGKKKDMKKVDHITRNIASMNAN-AKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
GK + K++ + + + AN K GS + RE YEDDWRY+A TAF
Sbjct: 917 C-GKIEKSPKLEGVEEDTS---ANVTKLGSNTYNERE---------NYEDDWRYMAATAF 963
Query: 1014 LVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHL 1073
LVKC GSRLT+CF+ VACSDATL LRAL+LP RLWF+VA LVPL SPVL+LQH ++P+
Sbjct: 964 LVKCVGSRLTICFIAVACSDATLTLRALVLPHRLWFDVASLVPLKSPVLSLQHAVVPLDP 1023
Query: 1074 PSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGS 1133
P + N Y +ISGATDGSI FWDVT VE FV+QVS++HIE +IDCQ RPRTGRGS
Sbjct: 1024 PHEGNTPYSDVYLLISGATDGSIGFWDVTKCVEAFVKQVSSIHIEKYIDCQLRPRTGRGS 1083
Query: 1134 QGGRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCE 1193
QGGR W+ L S +S R + +N ++ G +A + + ++ +
Sbjct: 1084 QGGRKWKLL----------GSKISKRAQ---ENSNSVGEAAEEDPASSL-----ELTNDH 1125
Query: 1194 PELNAVN----STSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGD 1249
P+ N N S ETSEI+ H++ NAHQSGVNCLHVS+ + S G F V+SGGD
Sbjct: 1126 PQENGKNEDADSLPETSEIKTSHVVKNAHQSGVNCLHVSRSNSSPSYGNGLMFNVISGGD 1185
Query: 1250 DQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFR 1309
DQA+HCL ++LS + I +++++ N Q +YRI +
Sbjct: 1186 DQALHCL--SFNILSSSNNRATI-SEIMDLN---------------QTPSYRIMLTDRGG 1227
Query: 1310 ATSAHSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARAC 1369
SAHSSAIKG+W D WVFSTGLDQR+R W LE+ L +HAH+V+SVPEPEAL A+A
Sbjct: 1228 IASAHSSAIKGVWMDTNWVFSTGLDQRVRCWFLEKDGKLIEHAHIVISVPEPEALDAKAI 1287
Query: 1370 GRNHYEIAVAGRGMQMVEF 1388
N Y+IAVAGRG+QMVEF
Sbjct: 1288 DENRYQIAVAGRGIQMVEF 1306
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|4558555|gb|AAD22648.1|AC007138_12 hypothetical protein [Arabidopsis thaliana] gi|7268570|emb|CAB80679.1| hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 1209 bits (3128), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 681/1399 (48%), Positives = 888/1399 (63%), Gaps = 211/1399 (15%)
Query: 8 EWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIR 67
+W G YLGE+S+L F++LP H+SS+P+LLAGSGS++LLYDL +G LIR FQVF G+R
Sbjct: 9 KWNPHAGPYLGEVSSLAFLNLPQHVSSIPYLLAGSGSEILLYDLSSGELIRSFQVFEGVR 68
Query: 68 LHGISCN--FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLV 125
+HG C+ F++ E R T+++ +FGEK+VK+F L EL+ +S E VNL
Sbjct: 69 VHGTVCSKSFVHSAE-----RYTYKLVIFGEKKVKIFSLIVELASSSG---EISVNLENF 120
Query: 126 QSLPRLSHWVFDVCFLKVCNG-----NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+SLPRLS+WVFDVCFL+ G ++ LAIGCSDNS+ +WD+ S + E+ SPERCL
Sbjct: 121 ESLPRLSNWVFDVCFLQDSTGSLEEEDKLLAIGCSDNSLSIWDVKESRMAFEIQSPERCL 180
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
LY+M+LWGD++ LRIASGTI+NEIIVW+ A L+ +H H
Sbjct: 181 LYTMRLWGDSISTLRIASGTIFNEIIVWR------AVGLDGDNVDHGH------------ 222
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
++A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E VG
Sbjct: 223 ---YSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVVG 271
Query: 301 SSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360
VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD S
Sbjct: 272 P-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPNS 330
Query: 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDSK 418
SLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDSK
Sbjct: 331 SLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDSK 388
Query: 419 SEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-EP 477
SEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 389 SEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGKV 448
Query: 478 KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+R
Sbjct: 449 RESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYR- 507
Query: 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFC 597
G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+ C
Sbjct: 508 -------GLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVILC 556
Query: 598 GDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRS 657
GDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI S
Sbjct: 557 GDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEICS 616
Query: 658 TGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTDF 716
TG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTDF
Sbjct: 617 TGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTDF 676
Query: 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMF 776
I+WNL E KD+VIHIHRHW+ + K+F
Sbjct: 677 ILWNLTAE-------------------------------TKDDVIHIHRHWVGGQKTKVF 705
Query: 777 PKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL-NKSSWIATGCEDGTVRLTRYSPGFE 835
P NLH QFHGRE+H+LCF+S + + G + ++S + ++SSWIATGCEDG+VRL+RY+ F
Sbjct: 706 PLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEFG 765
Query: 836 NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVG 895
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + + Q+ +D E+P LLISVG
Sbjct: 766 NWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCD-QDYAVDDCESPRLLISVG 824
Query: 896 AKRVLTSWLLRH-RGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSS 954
AKRV+TSWLLR+ R + E ++ +NR +++ S ++FQWL+TDMPTK
Sbjct: 825 AKRVVTSWLLRNGRHKKKGESCISDNGHNRASSEV-------SPVTFQWLATDMPTKYRP 877
Query: 955 THGKKKDMKKVDHITRNIASMNAN-AKTGSISSESREREAKAFLGDKYEDDWRYLAVTAF 1013
GK + K++ + + + AN K GS + RE YEDDWRY+A TAF
Sbjct: 878 C-GKIEKSPKLEGVEEDTS---ANVTKLGSNTYNERE---------NYEDDWRYMAATAF 924
Query: 1014 LVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMPIHL 1073
LVKC GSRL + L+L LI P+
Sbjct: 925 LVKCVGSRL----------EGQLSL-TLIEPI---------------------------- 945
Query: 1074 PSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRGS 1133
N Y +ISGATDGSI FWDVT VE FV+QVS++HIE +IDCQ RPRTGRGS
Sbjct: 946 --NGNTPYSDVYLLISGATDGSIGFWDVTKCVEAFVKQVSSIHIEKYIDCQLRPRTGRGS 1003
Query: 1134 QGGRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCE 1193
QGGR W+ L S +S R + +N ++ G +A + + ++ +
Sbjct: 1004 QGGRKWKLL----------GSKISKRAQ---ENSNSVGEAAEEDPASSL-----ELTNDH 1045
Query: 1194 PELNAVN----STSETSEIRPIHILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGD 1249
P+ N N S ETSEI+ H++ NAHQSGVNCLHVS+ + S G F V+SGGD
Sbjct: 1046 PQENGKNEDADSLPETSEIKTSHVVKNAHQSGVNCLHVSRSNSSPSYGNGLMFNVISGGD 1105
Query: 1250 DQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYYGQEQNQNYRIRFYNYFR 1309
DQA+HCL ++LS + I +++++ N Q +YRI +
Sbjct: 1106 DQALHCL--SFNILSSSNNRATI-SEIMDLN---------------QTPSYRIMLTDRGG 1147
Query: 1310 ATSAHSSAIKGIWTDGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPEPEALSARAC 1369
SAHSSAIK GLDQR+R W LE+ L +HAH+V+SVPEPEAL A+A
Sbjct: 1148 IASAHSSAIK------------GLDQRVRCWFLEKDGKLIEHAHIVISVPEPEALDAKAI 1195
Query: 1370 GRNHYEIAVAGRGMQMVEF 1388
N Y+IAVAGRG+QMVEF
Sbjct: 1196 DENRYQIAVAGRGIQMVEF 1214
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449511518|ref|XP_004163977.1| PREDICTED: WD repeat-containing protein 6-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 1179 bits (3050), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 601/1078 (55%), Positives = 776/1078 (71%), Gaps = 43/1078 (3%)
Query: 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ 61
GK++ S+W L GQYLGEISALCF+HLP +SS P LLAGSGS+V++Y+LE+G ++ F+
Sbjct: 3 GKEEQSDWHLHSGQYLGEISALCFLHLPPQISSFPILLAGSGSEVMVYNLESGKMLESFR 62
Query: 62 VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121
VF GIR+HGIS +N E S T++ F + +FGEKRVKL+ ++ E+ E CVN
Sbjct: 63 VFEGIRVHGISSISLNFNEASSFTKLDFILVVFGEKRVKLYRISVEVIA------EVCVN 116
Query: 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS--LAIGCSDNSIRVWDISNSSIILEVHSPERC 179
+ L+ SLPR +HWV D CFLKV + +AIGC DNS+ VWD S +IL+V SPERC
Sbjct: 117 MVLLCSLPRFNHWVLDACFLKVPIHDNCGYIAIGCGDNSVHVWDTCESRMILKVESPERC 176
Query: 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239
LLYSM+LWGD+++ +R+ASGTI+NEIIVW+V P +GN + K +
Sbjct: 177 LLYSMRLWGDDIDTIRVASGTIFNEIIVWEV-----VP----SKGNKKNLDEKSHKTHDI 227
Query: 240 Q--DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297
Q Q+ AV+ RL+ HEGSIFRI WSS G KLVSVSDDRSARIW + A+ D+D+
Sbjct: 228 QFHHMQYEAVHKSRLIAHEGSIFRIAWSSDGFKLVSVSDDRSARIWSLNAK-GSDADNPG 286
Query: 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYD 357
EV VL+GHNARVWDCC+ DS IITA EDCTCR WG DG+QL+MIKEHIGRG+WRCLYD
Sbjct: 287 EV--IVLFGHNARVWDCCIYDSLIITASEDCTCRAWGIDGQQLEMIKEHIGRGVWRCLYD 344
Query: 358 SLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417
+S+LL+TAGFDS+IKVH+ L G+ E + + + E+F+ IP+ + R DS
Sbjct: 345 PISNLLITAGFDSSIKVHRLNTSLSGTSNEPAENADRSMKREVFTTCIPDSLDHNRHMDS 404
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477
KSEYVRCL +SE T+Y+ATNHGYLYH L D V W K++ V E + IICMDLL+ P
Sbjct: 405 KSEYVRCLRFSSERTIYVATNHGYLYHATLSDSMGVMWTKLIHVGEEVQIICMDLLACSP 464
Query: 478 -KYPCGIDDWVALGDGKGNMTIVRVVGD--VHTPQLSFTFTWSAGIERQLLGTYWCKSLG 534
+ G +DW+ALGD +G MT+++V+ D HTP +S FTWSA ERQLLGT+WCKSLG
Sbjct: 465 FEVSGGAEDWIALGDSQGRMTVLKVLHDSNAHTPDIS--FTWSAEKERQLLGTFWCKSLG 522
Query: 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEV 594
R+IFTADP+G LKLW+L D S+ ++ K N LVAE+ SCFG RIMCLD S E+E+
Sbjct: 523 FRYIFTADPRGALKLWRLADHVSA--SQNGKNYNPSLVAEYISCFGLRIMCLDVSCEEEI 580
Query: 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654
+ CGD+RGNL+LFPL +DLL + + V++ P YFKGAHGISTV+++ VA+L S QTE
Sbjct: 581 VVCGDVRGNLILFPLSKDLLLETPITTGVKIIPTCYFKGAHGISTVTSVVVARLESCQTE 640
Query: 655 IRSTGGDGCICYLEYDK--DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFA 712
+ STG DGCIC++EY K DR+ LEFIGMKQVK L+ +QS+ + S+DL S YA GFA
Sbjct: 641 LHSTGADGCICHIEYVKVNDRKVLEFIGMKQVKALTSVQSLFYDQTSLDLTSNLYATGFA 700
Query: 713 STDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGE 772
S DFIIWNL TEAKV+QI CGGWRRP+S +LGD+PE+KNCFAYVKDE I+IHRHW+S E
Sbjct: 701 SADFIIWNLTTEAKVLQIQCGGWRRPYSNYLGDIPELKNCFAYVKDETIYIHRHWVSGSE 760
Query: 773 RKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSP 832
RK+FP+NLH+QFHGRE+H+LCFV E A+ K ++S WI TGCEDGTVR+TRY+
Sbjct: 761 RKVFPQNLHVQFHGRELHSLCFVPE-----ADNKLGISSRSCWIVTGCEDGTVRMTRYTR 815
Query: 833 GFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLI 892
G +W +S LLGEHVGGSAVRS+C++S ++ IS+ + + Q +D+E+P LLI
Sbjct: 816 GINSWPASNLLGEHVGGSAVRSLCYISNVHLISSNGTITPDAKDTQESDLDDREDPVLLI 875
Query: 893 SVGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKN 952
S GAKRVLTSWL +HR ++++ + +N G+ E S G +S+SF+WLSTDMPTKN
Sbjct: 876 SAGAKRVLTSWLQKHRKLEKIANACLH--HNAKGS-CEPS-GFPTSISFKWLSTDMPTKN 931
Query: 953 SSTHGKKKDMKKVDHITRNIASMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTA 1012
S++ ++ + +S+N +A++ S+ E E + +KYEDDWRY+AVT
Sbjct: 932 STS--RRNSFNTMQDEATTGSSINPDAESKSL-QEKEELSLTSCSVEKYEDDWRYMAVTG 988
Query: 1013 FLVKCPGSRLTVCFVVVACSDATLALRALILPLRLWFEVAMLVPLSSPVLALQHVIMP 1070
FLVK SR TVCF+VVACSDATL+LRALILP RLWF+VA LVP+ SPVL LQH++ P
Sbjct: 989 FLVKHFNSRFTVCFIVVACSDATLSLRALILPHRLWFDVASLVPVGSPVLTLQHIVFP 1046
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 1398 | ||||||
| TAIR|locus:2141395 | 1308 | AT4G01860 "AT4G01860" [Arabido | 0.518 | 0.554 | 0.560 | 3.7e-293 | |
| UNIPROTKB|A7Z052 | 1124 | WDR6 "WD repeat-containing pro | 0.093 | 0.116 | 0.355 | 1.1e-32 | |
| RGD|1307649 | 1125 | Wdr6 "WD repeat domain 6" [Rat | 0.092 | 0.115 | 0.350 | 4.2e-31 | |
| UNIPROTKB|E9PDU5 | 1070 | WDR6 "WD repeat-containing pro | 0.086 | 0.113 | 0.354 | 1.1e-25 | |
| UNIPROTKB|Q9NNW5 | 1121 | WDR6 "WD repeat-containing pro | 0.086 | 0.107 | 0.354 | 1.4e-25 | |
| UNIPROTKB|E2RQM6 | 1119 | WDR6 "Uncharacterized protein" | 0.125 | 0.156 | 0.331 | 5.2e-23 | |
| MGI|MGI:1930140 | 1125 | Wdr6 "WD repeat domain 6" [Mus | 0.128 | 0.16 | 0.304 | 5.9e-22 | |
| UNIPROTKB|F1SKI8 | 1019 | WDR6 "Uncharacterized protein" | 0.093 | 0.128 | 0.355 | 4.2e-21 | |
| POMBASE|SPBC1306.02 | 984 | rtt10 "WD repeat protein, huma | 0.080 | 0.114 | 0.357 | 1.7e-16 | |
| SGD|S000006104 | 1013 | RTT10 "WD40 domain-containing | 0.082 | 0.114 | 0.338 | 2.1e-14 |
| TAIR|locus:2141395 AT4G01860 "AT4G01860" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 2148 (761.2 bits), Expect = 3.7e-293, Sum P(2) = 3.7e-293
Identities = 424/756 (56%), Positives = 545/756 (72%)
Query: 241 DQQH-TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299
D H +A ++ RL GHEGSIFRI WS GSK+VSVSDDRSARIWE+ DS E V
Sbjct: 219 DHGHYSASHMLRLTGHEGSIFRIVWSLDGSKIVSVSDDRSARIWEI--------DSQEVV 270
Query: 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL 359
G VL+GH+ RVWDCC++DS I+TAGEDCTCRVWG DG QL++IKEHIGRGIWRCLYD
Sbjct: 271 GP-VLFGHSVRVWDCCISDSLIVTAGEDCTCRVWGVDGTQLEVIKEHIGRGIWRCLYDPN 329
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG--RTEIFSIKIPNFSEQIRLTDS 417
SSLLVTAGFDSAIKVHQ GS S N + E FS +PN ++ LTDS
Sbjct: 330 SSLLVTAGFDSAIKVHQLHN--RGSETSLDAVGVLNSPDKLEYFSTCLPNSTKHTGLTDS 387
Query: 418 KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN-E 476
KSEYVRCL T EDT+Y+ATNHG LYH +L +V W +++++ E PII MD++S +
Sbjct: 388 KSEYVRCLQFTQEDTIYVATNHGCLYHARLLSSGNVRWTELVRIPEEGPIITMDVMSGGK 447
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
+ C +DDWVALGDGKGNMTIVRV+GD++ P +W A ERQLLG +WCKSLG+R
Sbjct: 448 VRESCALDDWVALGDGKGNMTIVRVIGDMYNPHAGLNQSWKASPERQLLGAFWCKSLGYR 507
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
F+F+ +P+G LKLW+L S +++T +V L+AEFSS FG RIMC+DAS EDEV+
Sbjct: 508 FVFSCNPRGLLKLWKLSGSLES----AAETYDVSLLAEFSSGFGKRIMCVDASVEDEVIL 563
Query: 597 CGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656
CGDLRGN+ LFPL +D+L+ SV+ +++ L YFKGAHGISTVS+LSVA+L SN+ EI
Sbjct: 564 CGDLRGNITLFPLTKDMLHGVSVSSELKIPSLKYFKGAHGISTVSSLSVARLTSNKAEIC 623
Query: 657 STGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSV-SAENNSIDLASCNYAAGFASTD 715
STG DGCICY EYD++ ++LEF+G+KQ+KEL+L+QSV S D + +YAAGFASTD
Sbjct: 624 STGADGCICYFEYDREMQTLEFMGLKQLKELNLVQSVCQGVQFSEDHPNNDYAAGFASTD 683
Query: 716 FIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKM 775
FI+WNL E KV QI CGGWRRPHS++LG++PE +NCFAYVKD+VIHIHRHW+ + K+
Sbjct: 684 FILWNLTAETKVTQISCGGWRRPHSFYLGEIPEWQNCFAYVKDDVIHIHRHWVGGQKTKV 743
Query: 776 FPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALN-KSSWIATGCEDGTVRLTRYSPGF 834
FP NLH QFHGRE+H+LCF+S + + G + ++S ++ +SSWIATGCEDG+VRL+RY+ F
Sbjct: 744 FPLNLHTQFHGRELHSLCFISTDTKAGFDSEESKISDRSSWIATGCEDGSVRLSRYASEF 803
Query: 835 ENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISV 894
NWS+S+LLGEHVGGSAVRS+C VS ++ +S+ V N+ + ++ V +D E+P LLISV
Sbjct: 804 GNWSTSELLGEHVGGSAVRSVCCVSNMHMMSSDVPNLPDMCDQDYAV-DDCESPRLLISV 862
Query: 895 GAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDXXXXXXXXXXXXFQWLSTDMPTKNSS 954
GAKRV+TSWLLR+ + E+ + NG++ FQWL+TDMPTK
Sbjct: 863 GAKRVVTSWLLRNGRHKKKGESCISD----NGHNRASSEVSPVT--FQWLATDMPTKYRP 916
Query: 955 THGKKKDMKKVDHITRNIASMNANAKTGSISSESRE 990
GK + K++ + + S N K GS + RE
Sbjct: 917 C-GKIEKSPKLEGVEED-TSANVT-KLGSNTYNERE 949
|
|
| UNIPROTKB|A7Z052 WDR6 "WD repeat-containing protein 6" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 1.1e-32, Sum P(7) = 1.1e-32
Identities = 48/135 (35%), Positives = 74/135 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRALAAHERQAWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPGS 384
I++ H PGS
Sbjct: 321 GIRLWHLVGRGHPGS 335
|
|
| RGD|1307649 Wdr6 "WD repeat domain 6" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
|---|
Score = 221 (82.9 bits), Expect = 4.2e-31, Sum P(8) = 4.2e-31
Identities = 47/134 (35%), Positives = 73/134 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQTWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPG 383
I++ H PG
Sbjct: 321 GIRLWHLVGRGYPG 334
|
|
| UNIPROTKB|E9PDU5 WDR6 "WD repeat-containing protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.1e-25, Sum P(4) = 1.1e-25
Identities = 44/124 (35%), Positives = 70/124 (56%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 153 RISGHVGIIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 209
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 210 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 269
Query: 371 AIKV 374
I++
Sbjct: 270 GIRL 273
|
|
| UNIPROTKB|Q9NNW5 WDR6 "WD repeat-containing protein 6" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
|---|
Score = 220 (82.5 bits), Expect = 1.4e-25, Sum P(4) = 1.4e-25
Identities = 44/124 (35%), Positives = 70/124 (56%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RISGHVGIIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 320
Query: 371 AIKV 374
I++
Sbjct: 321 GIRL 324
|
|
| UNIPROTKB|E2RQM6 WDR6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
|---|
Score = 229 (85.7 bits), Expect = 5.2e-23, Sum P(6) = 5.2e-23
Identities = 63/190 (33%), Positives = 95/190 (50%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + +VT G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVVTGGDDS 320
Query: 371 AIKV-HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL---TDSKSEY----- 421
I++ H PGS S A F R+ ++K + RL TD+ + Y
Sbjct: 321 GIRLWHLVGRGYPGSGVS---ALCFKSRSRPGTLKAVTLAGSWRLLAVTDTGALYLYDLE 377
Query: 422 VRCLHLTSED 431
V+C ED
Sbjct: 378 VKCWEQLLED 387
|
|
| MGI|MGI:1930140 Wdr6 "WD repeat domain 6" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 5.9e-22, Sum P(6) = 5.9e-22
Identities = 56/184 (30%), Positives = 92/184 (50%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS R+W+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRLWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + +VT G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHRGRGIRAIATHERQAWVVTGGDDS 320
Query: 371 AIKV-HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429
I++ H PG S K + + ++ + + +TD S Y+ L + S
Sbjct: 321 GIRLWHLAGRGYPGLGVSSLSFKSPSRPGALKAVTLAGSWRVLAVTDVGSLYLYDLEVKS 380
Query: 430 EDTL 433
+ L
Sbjct: 381 WEQL 384
|
|
| UNIPROTKB|F1SKI8 WDR6 "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
|---|
Score = 223 (83.6 bits), Expect = 4.2e-21, Sum P(6) = 4.2e-21
Identities = 48/135 (35%), Positives = 74/135 (54%)
Query: 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310
R+ GH G IF + + L + S+DRS RIW+V + ++ +G +GH+AR
Sbjct: 204 RVSGHVGVIFSMSYLESKGLLATASEDRSVRIWKV-GDLRVPGGRVQNIGHC--FGHSAR 260
Query: 311 VWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370
VW L ++++I+AGEDC C VW +G+ L+ + H GRGI + ++T G DS
Sbjct: 261 VWQVKLLENYLISAGEDCVCLVWSHEGEILQAFRGHQGRGIRAIAAHERQAWVITGGDDS 320
Query: 371 AIKV-HQFQAFLPGS 384
I++ H PGS
Sbjct: 321 GIRLWHLVGRGHPGS 335
|
|
| POMBASE|SPBC1306.02 rtt10 "WD repeat protein, human WDR6 family, involved in endocytic recycling" [Schizosaccharomyces pombe (taxid:4896)] | Back alignment and assigned GO terms |
|---|
Score = 185 (70.2 bits), Expect = 1.7e-16, Sum P(4) = 1.7e-16
Identities = 45/126 (35%), Positives = 68/126 (53%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
LVGHEG+ F +++SS G L SVS+DR+ R+W + + S + G +GH+ARV
Sbjct: 190 LVGHEGACFDLKFSSDGRYLCSVSEDRTLRLWSIES-----SPFLIATG----FGHSARV 240
Query: 312 WDCC-LTDSFIITAGEDCTCRVWGSDGKQLK---MIKEHIGRGIWRCLYDSLSSLLVTAG 367
W C L + I T ED T R+W + K L H G+ IW + S + ++ T G
Sbjct: 241 WRCVFLPNKEIATVSEDLTLRLWTWNDKTLTNTYTYTGHRGKHIWSLVVSSANPIIYTGG 300
Query: 368 FDSAIK 373
D +++
Sbjct: 301 NDGSVR 306
|
|
| SGD|S000006104 RTT10 "WD40 domain-containing protein involved in endosomal recycling" [Saccharomyces cerevisiae (taxid:4932)] | Back alignment and assigned GO terms |
|---|
Score = 170 (64.9 bits), Expect = 2.1e-14, Sum P(5) = 2.1e-14
Identities = 46/136 (33%), Positives = 70/136 (51%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
+ L+GHEGSIF + S+ G + S SDDRS R+W++ E K SV + H
Sbjct: 172 IHNLLGHEGSIFYVNLSNNGRYVASCSDDRSIRLWDL--ETGKQL--------SVGWSHT 221
Query: 309 ARVWDCCL--TDSFIITAGEDCTCRVWGS-DGKQ------LKMIKE-HIGRGIWRCLYDS 358
AR+W+ DS +I+ EDCTCRVW + ++ + + E H+ + IW
Sbjct: 222 ARIWNLMFFDNDSKLISVSEDCTCRVWNIIESRENVAELSISNVYEVHLIKSIWGVDVKD 281
Query: 359 LSSLLVTAGFDSAIKV 374
+ VT+G D +K+
Sbjct: 282 DEMIAVTSGNDGRLKL 297
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 1398 | |||
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-18 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-14 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 3e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 9e-12 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 3e-10 | |
| cd00200 | 289 | cd00200, WD40, WD40 domain, found in a number of e | 4e-07 | |
| smart00320 | 40 | smart00320, WD40, WD40 repeats | 2e-04 | |
| pfam00400 | 39 | pfam00400, WD40, WD domain, G-beta repeat | 4e-04 | |
| COG2319 | 466 | COG2319, COG2319, FOG: WD40 repeat [General functi | 7e-04 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 4e-18
Identities = 60/265 (22%), Positives = 95/265 (35%), Gaps = 50/265 (18%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVH-SPERCLLYSMKLWG 188
+ V DV LA G SD +IR+WD+ + L H S + +S
Sbjct: 51 TGPVRDV---AASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFS----- 102
Query: 189 DNLEALRIASGTIY-NEIIVWKVDWE--------HVAPLLN---SPEGNHAHGSSSDFKC 236
RI S + I VW V+ H + + SP+G SS D
Sbjct: 103 ---PDGRILSSSSRDKTIKVWDVETGKCLTTLRGHTDWVNSVAFSPDGTFVASSSQD-GT 158
Query: 237 FKLQDQQHTAVNLFRLV----GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
KL D + + V GH G + + +S G KL+S S D + ++W++
Sbjct: 159 IKLWD-----LRTGKCVATLTGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKCLG 213
Query: 293 SDSIEEVGSSVLYGHNARVWDCCLTDS--FIITAGEDCTCRVW-GSDGKQLKMIKEHIGR 349
L GH V + + + ED T RVW G+ ++ + H
Sbjct: 214 ----------TLRGHENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGECVQTLSGHTNS 263
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKV 374
+ + L + D I++
Sbjct: 264 -VTSLAWSPDGKRLASGSADGTIRI 287
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 3e-14
Identities = 52/266 (19%), Positives = 89/266 (33%), Gaps = 59/266 (22%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGD 189
+ V V F + LA G D +I+VWD+ ++ L+ H+
Sbjct: 9 TGGVTCVAFS---PDGKLLATGSGDGTIKVWDLETGELLRTLKGHT-------------- 51
Query: 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249
V V L S S K +L D + T +
Sbjct: 52 ---------------GPVRDVAASADGTYL---------ASGSSDKTIRLWDLE-TGECV 86
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309
L GH + + +S G L S S D++ ++W+V + L GH
Sbjct: 87 RTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDVE----------TGKCLTTLRGHTD 136
Query: 310 RVWDCCL--TDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366
V +F+ ++ +D T ++W GK + + H G + + L+++
Sbjct: 137 WVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEKLLSS 195
Query: 367 GFDSAIKVHQFQAF-LPGSLESHPEA 391
D IK+ G+L H
Sbjct: 196 SSDGTIKLWDLSTGKCLGTLRGHENG 221
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 27/132 (20%), Positives = 49/132 (37%), Gaps = 14/132 (10%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH G + + +S G L + S D + ++W D L GH V
Sbjct: 5 LKGHTGGVTCVAFSPDGKLLATGSGDGTIKVW----------DLETGELLRTLKGHTGPV 54
Query: 312 WDC--CLTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
D +++ + D T R+W G+ ++ + H + + +L ++
Sbjct: 55 RDVAASADGTYLASGSSDKTIRLWDLETGECVRTLTGHTS-YVSSVAFSPDGRILSSSSR 113
Query: 369 DSAIKVHQFQAF 380
D IKV +
Sbjct: 114 DKTIKVWDVETG 125
|
Length = 289 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 3e-12
Identities = 65/335 (19%), Positives = 108/335 (32%), Gaps = 92/335 (27%)
Query: 9 WRLDVGQYL----GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH 64
W L+ G+ L G + V + + L S + L+DLE G +R
Sbjct: 36 WDLETGELLRTLKGHTGPVRDVAASADGTYL--ASGSSDKTIRLWDLETGECVR---TLT 90
Query: 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL 124
G + S F S R+ + +K +K++++
Sbjct: 91 GHTSYVSSVAF------SPDGRIL--SSSSRDKTIKVWDVE---------------TGKC 127
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLY 182
+ +L + WV V F +A D +I++WD+ + L H+ E
Sbjct: 128 LTTLRGHTDWVNSVAFSP---DGTFVASSSQDGTIKLWDLRTGKCVATLTGHTGE----- 179
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH--AHGSSSDFKCFKLQ 240
V V + SP+G + S K + L
Sbjct: 180 ------------------------VNSVAF--------SPDGEKLLSSSSDGTIKLWDLS 207
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300
+ L GHE + + +S G L S S+D + R+W D + E V
Sbjct: 208 TGKCLGT----LRGHENGVNSVAFSPDGYLLASGSEDGTIRVW--------DLRTGECVQ 255
Query: 301 SSVLYGHNARVWDCCLTDS--FIITAGEDCTCRVW 333
L GH V + + + D T R+W
Sbjct: 256 --TLSGHTNSVTSLAWSPDGKRLASGSADGTIRIW 288
|
Length = 289 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 69.0 bits (167), Expect = 9e-12
Identities = 55/341 (16%), Positives = 103/341 (30%), Gaps = 36/341 (10%)
Query: 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK 185
L + + F L G SD +I++WD+ N +++ S K
Sbjct: 59 LLLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVS-K 114
Query: 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF----KCFKLQD 241
L + + I + + V D L+ + EG+ +S F K
Sbjct: 115 LALSSPDGNSILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDGKLLASGS 174
Query: 242 QQHTAVNLFR---------LVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWK 291
+ L+ L GH + + +S G + S S D + R+W++
Sbjct: 175 SLDGTIKLWDLRTGKPLSTLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLL 234
Query: 292 DSDSIEEVGSSVLYGHNARVWDCCLTDS-FIITAGEDCTCRVW--GSDGKQLKMIKEHIG 348
S L GH+ V D + + D T R+W S L+ + H
Sbjct: 235 ---------RSTLSGHSDSVVSSFSPDGSLLASGSSDGTIRLWDLRSSSSLLRTLSGH-S 284
Query: 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNF 408
+ + LL + D +++ + + + + S+
Sbjct: 285 SSVLSVAFSPDGKLLASGSSDGTVRLWDLE-----TGKLLSSLTLKGHEGPVSSLSFSPD 339
Query: 409 SEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449
+ S +R L + L H +
Sbjct: 340 GSLLVSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSP 380
|
Length = 466 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 64.0 bits (154), Expect = 3e-10
Identities = 52/246 (21%), Positives = 91/246 (36%), Gaps = 34/246 (13%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER-- 178
L+++L S V + F +G + D +I++WD+ + +
Sbjct: 144 PGKLIRTLEGHSESVTSLAFSP--DGKLLASGSSLDGTIKLWDLRTGKPLSTLAGHTDPV 201
Query: 179 -CLLYSMKLWGDNLEALRIASGTIYNEIIVWKV-DWEHVAPLLN----------SPEGNH 226
L +S L IASG+ I +W + + + L+ SP+G+
Sbjct: 202 SSLAFS------PDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSVVSSFSPDGSL 255
Query: 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286
SSD +L D + ++ L L GH S+ + +S G L S S D + R+W
Sbjct: 256 LASGSSD-GTIRLWDLRSSSSLLRTLSGHSSSVLSVAFSPDGKLLASGSSDGTVRLW--- 311
Query: 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS---FIITAGEDCTCRVWGSDGKQLKMI 343
D ++ + + S L GH V + + +D T R+W +
Sbjct: 312 -----DLETGKLLSSLTLKGHEGPVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGKPLKT 366
Query: 344 KEHIGR 349
E
Sbjct: 367 LEGHSN 372
|
Length = 466 |
| >gnl|CDD|238121 cd00200, WD40, WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and bottom surface of the propeller are proposed to coordinate interactions with other proteins and/or small ligands; 7 copies of the repeat are present in this alignment | Back alignment and domain information |
|---|
Score = 53.1 bits (128), Expect = 4e-07
Identities = 16/77 (20%), Positives = 28/77 (36%), Gaps = 4/77 (5%)
Query: 301 SSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYD 357
L GH V + + T D T +VW + +L +K H G +
Sbjct: 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS 60
Query: 358 SLSSLLVTAGFDSAIKV 374
+ + L + D I++
Sbjct: 61 ADGTYLASGSSDKTIRL 77
|
Length = 289 |
| >gnl|CDD|197651 smart00320, WD40, WD40 repeats | Back alignment and domain information |
|---|
Score = 40.0 bits (94), Expect = 2e-04
Identities = 13/36 (36%), Positives = 20/36 (55%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
L L GH G + + +S G L S SDD + ++W+
Sbjct: 5 LKTLKGHTGPVTSVAFSPDGKYLASGSDDGTIKLWD 40
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. Length = 40 |
| >gnl|CDD|201208 pfam00400, WD40, WD domain, G-beta repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (91), Expect = 4e-04
Identities = 14/35 (40%), Positives = 20/35 (57%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283
L L GH G + + +S G+ L S SDD + R+W
Sbjct: 4 LRTLKGHTGPVTSVAFSPDGNLLASGSDDGTVRVW 38
|
Length = 39 |
| >gnl|CDD|225201 COG2319, COG2319, FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Score = 43.5 bits (101), Expect = 7e-04
Identities = 42/186 (22%), Positives = 76/186 (40%), Gaps = 16/186 (8%)
Query: 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY 182
SL+++L S V V F + LA G SD ++R+WD+ ++ +
Sbjct: 275 SLLRTLSGHSSSVLSVAFSPD---GKLLASGSSDGTVRLWDLETGKLLSSLTLKGHEGPV 331
Query: 183 SMKLWGDNLEALRIASGTIYNEIIVWKVDWEH----------VAPLLNSPEGNHAHGSSS 232
S + + L ++ G+ I +W + V + SP+G S+
Sbjct: 332 SSLSFSPDGSLL-VSGGSDDGTIRLWDLRTGKPLKTLEGHSNVLSVSFSPDGRVVSSGST 390
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
D +L D ++ L L GH + +++S G L S S D + R+W+++
Sbjct: 391 DGTV-RLWDLSTGSL-LRNLDGHTSRVTSLDFSPDGKSLASGSSDNTIRLWDLKTSLKSV 448
Query: 293 SDSIEE 298
S S +
Sbjct: 449 SFSPDG 454
|
Length = 466 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1398 | |||
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0319 | 775 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0318 | 603 | consensus WD40 repeat stress protein/actin interac | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0271 | 480 | consensus Notchless-like WD40 repeat-containing pr | 100.0 | |
| KOG0291 | 893 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0306 | 888 | consensus WD40-repeat-containing subunit of the 18 | 100.0 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 100.0 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 100.0 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 100.0 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 100.0 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 100.0 | |
| KOG2106 | 626 | consensus Uncharacterized conserved protein, conta | 100.0 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.98 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.98 | |
| KOG0272 | 459 | consensus U4/U6 small nuclear ribonucleoprotein Pr | 99.97 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.97 | |
| KOG0279 | 315 | consensus G protein beta subunit-like protein [Sig | 99.97 | |
| KOG0315 | 311 | consensus G-protein beta subunit-like protein (con | 99.97 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.97 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 99.97 | |
| KOG0286 | 343 | consensus G-protein beta subunit [General function | 99.97 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.97 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG1063 | 764 | consensus RNA polymerase II elongator complex, sub | 99.96 | |
| KOG1408 | 1080 | consensus WD40 repeat protein [Function unknown] | 99.96 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.96 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG0285 | 460 | consensus Pleiotropic regulator 1 [RNA processing | 99.96 | |
| KOG1539 | 910 | consensus WD repeat protein [General function pred | 99.96 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.96 | |
| KOG0645 | 312 | consensus WD40 repeat protein [General function pr | 99.96 | |
| KOG0292 | 1202 | consensus Vesicle coat complex COPI, alpha subunit | 99.96 | |
| KOG0273 | 524 | consensus Beta-transducin family (WD-40 repeat) pr | 99.95 | |
| KOG0296 | 399 | consensus Angio-associated migratory cell protein | 99.95 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.95 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.95 | |
| KOG0281 | 499 | consensus Beta-TrCP (transducin repeats containing | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| KOG0295 | 406 | consensus WD40 repeat-containing protein [Function | 99.95 | |
| KOG2048 | 691 | consensus WD40 repeat protein [General function pr | 99.95 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.95 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.95 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.94 | |
| KOG0263 | 707 | consensus Transcription initiation factor TFIID, s | 99.94 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.94 | |
| KOG0284 | 464 | consensus Polyadenylation factor I complex, subuni | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.93 | |
| KOG0293 | 519 | consensus WD40 repeat-containing protein [Function | 99.93 | |
| KOG0266 | 456 | consensus WD40 repeat-containing protein [General | 99.93 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.93 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.92 | |
| PLN00181 | 793 | protein SPA1-RELATED; Provisional | 99.92 | |
| KOG0265 | 338 | consensus U5 snRNP-specific protein-like factor an | 99.92 | |
| cd00200 | 289 | WD40 WD40 domain, found in a number of eukaryotic | 99.92 | |
| KOG0313 | 423 | consensus Microtubule binding protein YTM1 (contai | 99.91 | |
| KOG0316 | 307 | consensus Conserved WD40 repeat-containing protein | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0282 | 503 | consensus mRNA splicing factor [Function unknown] | 99.91 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.91 | |
| KOG0274 | 537 | consensus Cdc4 and related F-box and WD-40 protein | 99.9 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.89 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0277 | 311 | consensus Peroxisomal targeting signal type 2 rece | 99.89 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.89 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.89 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.89 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.89 | |
| KOG0643 | 327 | consensus Translation initiation factor 3, subunit | 99.88 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.88 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.88 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.88 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.88 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.88 | |
| KOG0278 | 334 | consensus Serine/threonine kinase receptor-associa | 99.88 | |
| KOG0301 | 745 | consensus Phospholipase A2-activating protein (con | 99.87 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0275 | 508 | consensus Conserved WD40 repeat-containing protein | 99.87 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.87 | |
| KOG0973 | 942 | consensus Histone transcription regulator HIRA, WD | 99.87 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.87 | |
| KOG0288 | 459 | consensus WD40 repeat protein TipD [General functi | 99.86 | |
| KOG0310 | 487 | consensus Conserved WD40 repeat-containing protein | 99.86 | |
| KOG0283 | 712 | consensus WD40 repeat-containing protein [Function | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.86 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.86 | |
| KOG0772 | 641 | consensus Uncharacterized conserved protein, conta | 99.86 | |
| PTZ00421 | 493 | coronin; Provisional | 99.86 | |
| PTZ00420 | 568 | coronin; Provisional | 99.85 | |
| KOG0268 | 433 | consensus Sof1-like rRNA processing protein (conta | 99.85 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.85 | |
| KOG0300 | 481 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.85 | |
| KOG0641 | 350 | consensus WD40 repeat protein [General function pr | 99.85 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.85 | |
| KOG0308 | 735 | consensus Conserved WD40 repeat-containing protein | 99.85 | |
| KOG0294 | 362 | consensus WD40 repeat-containing protein [Function | 99.84 | |
| KOG1446 | 311 | consensus Histone H3 (Lys4) methyltransferase comp | 99.84 | |
| KOG0305 | 484 | consensus Anaphase promoting complex, Cdc20, Cdh1, | 99.84 | |
| PTZ00420 | 568 | coronin; Provisional | 99.84 | |
| KOG0289 | 506 | consensus mRNA splicing factor [General function p | 99.84 | |
| KOG1407 | 313 | consensus WD40 repeat protein [Function unknown] | 99.84 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.83 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.83 | |
| KOG0299 | 479 | consensus U3 snoRNP-associated protein (contains W | 99.83 | |
| KOG0640 | 430 | consensus mRNA cleavage stimulating factor complex | 99.83 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.83 | |
| KOG0647 | 347 | consensus mRNA export protein (contains WD40 repea | 99.82 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.81 | |
| KOG0639 | 705 | consensus Transducin-like enhancer of split protei | 99.8 | |
| KOG1036 | 323 | consensus Mitotic spindle checkpoint protein BUB3, | 99.8 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.8 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.79 | |
| KOG1332 | 299 | consensus Vesicle coat complex COPII, subunit SEC1 | 99.78 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.78 | |
| KOG0264 | 422 | consensus Nucleosome remodeling factor, subunit CA | 99.78 | |
| KOG0646 | 476 | consensus WD40 repeat protein [General function pr | 99.78 | |
| KOG0974 | 967 | consensus WD-repeat protein WDR6, WD repeat superf | 99.78 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.77 | |
| KOG2445 | 361 | consensus Nuclear pore complex component (sc Seh1) | 99.77 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.77 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.77 | |
| KOG2096 | 420 | consensus WD40 repeat protein [General function pr | 99.77 | |
| KOG1445 | 1012 | consensus Tumor-specific antigen (contains WD repe | 99.76 | |
| KOG4283 | 397 | consensus Transcription-coupled repair protein CSA | 99.76 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.76 | |
| TIGR03866 | 300 | PQQ_ABC_repeats PQQ-dependent catabolism-associate | 99.75 | |
| KOG0269 | 839 | consensus WD40 repeat-containing protein [Function | 99.75 | |
| KOG1963 | 792 | consensus WD40 repeat protein [General function pr | 99.75 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.74 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.73 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.73 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.73 | |
| KOG2055 | 514 | consensus WD40 repeat protein [General function pr | 99.72 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.72 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.72 | |
| KOG0267 | 825 | consensus Microtubule severing protein katanin p80 | 99.72 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.72 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 99.71 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.71 | |
| KOG1034 | 385 | consensus Transcriptional repressor EED/ESC/FIE, r | 99.7 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.7 | |
| KOG0321 | 720 | consensus WD40 repeat-containing protein L2DTL [Fu | 99.7 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.69 | |
| KOG4378 | 673 | consensus Nuclear protein COP1 [Signal transductio | 99.69 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.69 | |
| KOG0650 | 733 | consensus WD40 repeat nucleolar protein Bop1, invo | 99.68 | |
| KOG1274 | 933 | consensus WD40 repeat protein [General function pr | 99.67 | |
| KOG4328 | 498 | consensus WD40 protein [Function unknown] | 99.67 | |
| KOG0302 | 440 | consensus Ribosome Assembly protein [General funct | 99.67 | |
| KOG0270 | 463 | consensus WD40 repeat-containing protein [Function | 99.66 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.65 | |
| KOG1273 | 405 | consensus WD40 repeat protein [General function pr | 99.65 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.63 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.63 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.62 | |
| COG2319 | 466 | FOG: WD40 repeat [General function prediction only | 99.62 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.62 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.61 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.61 | |
| KOG1007 | 370 | consensus WD repeat protein TSSC1, WD repeat super | 99.6 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.59 | |
| KOG2919 | 406 | consensus Guanine nucleotide-binding protein [Gene | 99.58 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.57 | |
| KOG1188 | 376 | consensus WD40 repeat protein [General function pr | 99.57 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.55 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.55 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.54 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.54 | |
| KOG0290 | 364 | consensus Conserved WD40 repeat-containing protein | 99.53 | |
| KOG1009 | 434 | consensus Chromatin assembly complex 1 subunit B/C | 99.53 | |
| KOG4227 | 609 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG1524 | 737 | consensus WD40 repeat-containing protein CHE-2 [Ge | 99.52 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.52 | |
| KOG0307 | 1049 | consensus Vesicle coat complex COPII, subunit SEC3 | 99.52 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.51 | |
| KOG0303 | 472 | consensus Actin-binding protein Coronin, contains | 99.49 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.49 | |
| KOG0649 | 325 | consensus WD40 repeat protein [General function pr | 99.46 | |
| KOG0642 | 577 | consensus Cell-cycle nuclear protein, contains WD- | 99.45 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.45 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.45 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.43 | |
| PRK11028 | 330 | 6-phosphogluconolactonase; Provisional | 99.42 | |
| KOG0644 | 1113 | consensus Uncharacterized conserved protein, conta | 99.42 | |
| KOG0322 | 323 | consensus G-protein beta subunit-like protein GNB1 | 99.41 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.41 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.4 | |
| KOG2110 | 391 | consensus Uncharacterized conserved protein, conta | 99.38 | |
| KOG1517 | 1387 | consensus Guanine nucleotide binding protein MIP1 | 99.38 | |
| KOG1310 | 758 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1334 | 559 | consensus WD40 repeat protein [General function pr | 99.35 | |
| KOG1240 | 1431 | consensus Protein kinase containing WD40 repeats [ | 99.33 | |
| KOG1587 | 555 | consensus Cytoplasmic dynein intermediate chain [C | 99.32 | |
| KOG1523 | 361 | consensus Actin-related protein Arp2/3 complex, su | 99.29 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.23 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| KOG2111 | 346 | consensus Uncharacterized conserved protein, conta | 99.23 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 99.21 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.19 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.19 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.18 | |
| KOG0771 | 398 | consensus Prolactin regulatory element-binding pro | 99.18 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 99.17 | |
| PRK01742 | 429 | tolB translocation protein TolB; Provisional | 99.16 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 99.14 | |
| KOG4497 | 447 | consensus Uncharacterized conserved protein WDR8, | 99.14 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 99.13 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.11 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.1 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.07 | |
| KOG3881 | 412 | consensus Uncharacterized conserved protein [Funct | 99.07 | |
| KOG1272 | 545 | consensus WD40-repeat-containing subunit of the 18 | 99.04 | |
| PF02239 | 369 | Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO | 99.04 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 99.03 | |
| KOG2394 | 636 | consensus WD40 protein DMR-N9 [General function pr | 99.02 | |
| KOG1912 | 1062 | consensus WD40 repeat protein [General function pr | 99.01 | |
| KOG1354 | 433 | consensus Serine/threonine protein phosphatase 2A, | 99.01 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.98 | |
| KOG2139 | 445 | consensus WD40 repeat protein [General function pr | 98.98 | |
| PRK03629 | 429 | tolB translocation protein TolB; Provisional | 98.94 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.88 | |
| PF04762 | 928 | IKI3: IKI3 family; InterPro: IPR006849 Members of | 98.87 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.86 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.84 | |
| KOG2321 | 703 | consensus WD40 repeat protein [General function pr | 98.84 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.84 | |
| PRK04922 | 433 | tolB translocation protein TolB; Provisional | 98.79 | |
| PRK05137 | 435 | tolB translocation protein TolB; Provisional | 98.79 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.78 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.77 | |
| PRK02889 | 427 | tolB translocation protein TolB; Provisional | 98.76 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.73 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.72 | |
| PF08662 | 194 | eIF2A: Eukaryotic translation initiation factor eI | 98.71 | |
| KOG1409 | 404 | consensus Uncharacterized conserved protein, conta | 98.7 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 98.68 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.68 | |
| KOG0280 | 339 | consensus Uncharacterized conserved protein [Amino | 98.67 | |
| TIGR03300 | 377 | assembly_YfgL outer membrane assembly lipoprotein | 98.66 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.65 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.64 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.57 | |
| KOG2315 | 566 | consensus Predicted translation initiation factor | 98.56 | |
| COG5354 | 561 | Uncharacterized protein, contains Trp-Asp (WD) rep | 98.54 | |
| PF10282 | 345 | Lactonase: Lactonase, 7-bladed beta-propeller; Int | 98.54 | |
| TIGR02800 | 417 | propeller_TolB tol-pal system beta propeller repea | 98.51 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.5 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.49 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.45 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.44 | |
| KOG4547 | 541 | consensus WD40 repeat-containing protein [General | 98.44 | |
| COG2706 | 346 | 3-carboxymuconate cyclase [Carbohydrate transport | 98.44 | |
| KOG0309 | 1081 | consensus Conserved WD40 repeat-containing protein | 98.42 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 98.41 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.41 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.4 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.4 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.39 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.37 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 98.37 | |
| TIGR02658 | 352 | TTQ_MADH_Hv methylamine dehydrogenase heavy chain. | 98.33 | |
| PRK00178 | 430 | tolB translocation protein TolB; Provisional | 98.31 | |
| KOG1064 | 2439 | consensus RAVE (regulator of V-ATPase assembly) co | 98.31 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.3 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.26 | |
| PRK01029 | 428 | tolB translocation protein TolB; Provisional | 98.24 | |
| KOG4190 | 1034 | consensus Uncharacterized conserved protein [Funct | 98.21 | |
| KOG4714 | 319 | consensus Nucleoporin [Nuclear structure] | 98.21 | |
| KOG2314 | 698 | consensus Translation initiation factor 3, subunit | 98.2 | |
| PRK04792 | 448 | tolB translocation protein TolB; Provisional | 98.2 | |
| COG5170 | 460 | CDC55 Serine/threonine protein phosphatase 2A, reg | 98.19 | |
| COG4946 | 668 | Uncharacterized protein related to the periplasmic | 98.15 | |
| PLN02919 | 1057 | haloacid dehalogenase-like hydrolase family protei | 98.12 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 98.08 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 98.05 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 98.0 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 98.0 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.98 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 97.97 | |
| PRK11138 | 394 | outer membrane biogenesis protein BamB; Provisiona | 97.96 | |
| KOG4532 | 344 | consensus WD40-like repeat containing protein [Gen | 97.96 | |
| PF13360 | 238 | PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A | 97.94 | |
| PF00400 | 39 | WD40: WD domain, G-beta repeat; InterPro: IPR01978 | 97.92 | |
| KOG3914 | 390 | consensus WD repeat protein WDR4 [Function unknown | 97.89 | |
| PF15492 | 282 | Nbas_N: Neuroblastoma-amplified sequence, N termin | 97.88 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.82 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 97.79 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.68 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.66 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.62 | |
| PF07433 | 305 | DUF1513: Protein of unknown function (DUF1513); In | 97.6 | |
| KOG4649 | 354 | consensus PQQ (pyrrolo-quinoline quinone) repeat p | 97.56 | |
| PF08450 | 246 | SGL: SMP-30/Gluconolaconase/LRE-like region; Inter | 97.41 | |
| KOG2695 | 425 | consensus WD40 repeat protein [General function pr | 97.4 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.37 | |
| PRK04043 | 419 | tolB translocation protein TolB; Provisional | 97.34 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.32 | |
| KOG3621 | 726 | consensus WD40 repeat-containing protein [General | 97.27 | |
| KOG1275 | 1118 | consensus PAB-dependent poly(A) ribonuclease, subu | 97.22 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 97.14 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 97.09 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 97.04 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.03 | |
| PF03178 | 321 | CPSF_A: CPSF A subunit region; InterPro: IPR004871 | 97.0 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 97.0 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.98 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.97 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 96.95 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 96.94 | |
| PF11768 | 545 | DUF3312: Protein of unknown function (DUF3312); In | 96.92 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.88 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.82 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 96.81 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 96.75 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 96.72 | |
| KOG0882 | 558 | consensus Cyclophilin-related peptidyl-prolyl cis- | 96.71 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 96.7 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.7 | |
| PF06433 | 342 | Me-amine-dh_H: Methylamine dehydrogenase heavy cha | 96.61 | |
| cd00216 | 488 | PQQ_DH Dehydrogenases with pyrrolo-quinoline quino | 96.58 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 96.42 | |
| KOG1832 | 1516 | consensus HIV-1 Vpr-binding protein [Cell cycle co | 96.38 | |
| PF06977 | 248 | SdiA-regulated: SdiA-regulated; InterPro: IPR00972 | 96.35 | |
| KOG1645 | 463 | consensus RING-finger-containing E3 ubiquitin liga | 96.23 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 96.15 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 96.05 | |
| PF08596 | 395 | Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; | 95.81 | |
| PF08553 | 794 | VID27: VID27 cytoplasmic protein; InterPro: IPR013 | 95.67 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 95.5 | |
| smart00320 | 40 | WD40 WD40 repeats. Note that these repeats are per | 95.44 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.24 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 95.17 | |
| PRK02888 | 635 | nitrous-oxide reductase; Validated | 95.17 | |
| PF00930 | 353 | DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-termin | 95.14 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.11 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 94.98 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 94.87 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 94.81 | |
| COG3204 | 316 | Uncharacterized protein conserved in bacteria [Fun | 94.62 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 94.51 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 94.35 | |
| PF14583 | 386 | Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C | 94.33 | |
| KOG1897 | 1096 | consensus Damage-specific DNA binding complex, sub | 94.32 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 94.26 | |
| PF14783 | 111 | BBS2_Mid: Ciliary BBSome complex subunit 2, middle | 94.23 | |
| KOG1008 | 783 | consensus Uncharacterized conserved protein, conta | 93.55 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 93.44 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 93.24 | |
| PF05694 | 461 | SBP56: 56kDa selenium binding protein (SBP56); Int | 92.9 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 92.8 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 92.63 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 92.26 | |
| COG3386 | 307 | Gluconolactonase [Carbohydrate transport and metab | 92.25 | |
| COG3391 | 381 | Uncharacterized conserved protein [Function unknow | 92.12 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 91.98 | |
| PF04841 | 410 | Vps16_N: Vps16, N-terminal region; InterPro: IPR00 | 91.81 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 91.77 | |
| PF00780 | 275 | CNH: CNH domain; InterPro: IPR001180 Based on sequ | 91.71 | |
| PF02897 | 414 | Peptidase_S9_N: Prolyl oligopeptidase, N-terminal | 91.67 | |
| PRK13616 | 591 | lipoprotein LpqB; Provisional | 91.54 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 91.14 | |
| KOG4640 | 665 | consensus Anaphase-promoting complex (APC), subuni | 90.72 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.47 | |
| PF14870 | 302 | PSII_BNR: Photosynthesis system II assembly factor | 90.29 | |
| KOG1898 | 1205 | consensus Splicing factor 3b, subunit 3 [RNA proce | 90.19 | |
| PHA02713 | 557 | hypothetical protein; Provisional | 90.06 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 90.01 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 89.88 | |
| PF12894 | 47 | Apc4_WD40: Anaphase-promoting complex subunit 4 WD | 89.01 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 88.82 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 88.75 | |
| KOG2395 | 644 | consensus Protein involved in vacuole import and d | 87.09 | |
| KOG2444 | 238 | consensus WD40 repeat protein [General function pr | 86.59 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 86.22 | |
| PF07995 | 331 | GSDH: Glucose / Sorbosone dehydrogenase; InterPro: | 86.2 | |
| KOG2079 | 1206 | consensus Vacuolar assembly/sorting protein VPS8 [ | 85.94 | |
| PF05096 | 264 | Glu_cyclase_2: Glutamine cyclotransferase; InterPr | 85.68 | |
| PF10168 | 717 | Nup88: Nuclear pore component; InterPro: IPR019321 | 85.57 | |
| KOG3630 | 1405 | consensus Nuclear pore complex, Nup214/CAN compone | 85.08 | |
| PRK13684 | 334 | Ycf48-like protein; Provisional | 84.69 | |
| COG0823 | 425 | TolB Periplasmic component of the Tol biopolymer t | 83.37 | |
| COG3490 | 366 | Uncharacterized protein conserved in bacteria [Fun | 83.23 | |
| KOG4441 | 571 | consensus Proteins containing BTB/POZ and Kelch do | 82.09 | |
| KOG4499 | 310 | consensus Ca2+-binding protein Regucalcin/SMP30 [I | 81.25 | |
| PF14727 | 418 | PHTB1_N: PTHB1 N-terminus | 80.85 | |
| TIGR03075 | 527 | PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methan | 80.77 | |
| PF08728 | 717 | CRT10: CRT10; InterPro: IPR014839 CRT10 is a trans | 80.54 | |
| PF15390 | 671 | DUF4613: Domain of unknown function (DUF4613) | 80.28 |
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-59 Score=560.91 Aligned_cols=958 Identities=26% Similarity=0.334 Sum_probs=640.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
+.+++++.++- . +||++|+++.|.+||+.++.++..+..++..++| . +.+ .+-..+
T Consensus 6 ~~~~l~~~~~~--~------~~llag~gp~i~~yd~~s~~li~~~~~~~~~~~H----~-------~e~-----~~~l~~ 61 (967)
T KOG0974|consen 6 SLGPLNLPQLV--S------DYLLAGSGPEILVYDLSSGCLIRHLIQSKILEVH----R-------GEG-----KVKLLS 61 (967)
T ss_pred ccccccchhhc--c------ceeeecCCCceEEeeCCchhHhhhhhhhcccccc----c-------ccc-----cceecc
Confidence 56777777776 3 5999999999999999999998888877766666 2 222 222222
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000602 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1398)
Q Consensus 96 d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~ 175 (1398)
...|.......... .......+..-.+||....+.. ....++++..++.+.+||...+.....+.+
T Consensus 62 ~~~v~~~~~~~v~~-----------~~~~~~~~~~~s~wi~g~~l~~---e~k~i~l~~~~ns~~i~d~~~~~~~~~i~~ 127 (967)
T KOG0974|consen 62 GKIVTCAKSDEVYV-----------KEASNQIIERFSDWIFGAKLFE---ENKKIALVTSRNSLLIRDSKNSSVLSKIQS 127 (967)
T ss_pred ceEEEEEeecceee-----------cchhhhhhhhccccccccchhh---hcceEEEEEcCceEEEEecccCceehhcCC
Confidence 22222222221000 0011112334457777766666 778899999999999999999999999999
Q ss_pred CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 176 ~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
.+++.++++..+.++++..++++|+..++|.+|++.. ...+. .+.||
T Consensus 128 ~er~~l~~~~~~g~s~~~~~i~~gsv~~~iivW~~~~--------------------------------dn~p~-~l~GH 174 (967)
T KOG0974|consen 128 DERCTLYSSLIIGDSAEELYIASGSVFGEIIVWKPHE--------------------------------DNKPI-RLKGH 174 (967)
T ss_pred CceEEEEeEEEEeccCcEEEEEeccccccEEEEeccc--------------------------------cCCcc-eeccc
Confidence 9999999999999999999999999999999999870 22223 78899
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~ 335 (1398)
++.|+++.|+.||++++|+|+|+++|+|++.+.+.. . ...++|+++||.+.|.++.++|+++|.++++|+.
T Consensus 175 eG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~-----~----~~~fgHsaRvw~~~~~~n~i~t~gedctcrvW~~ 245 (967)
T KOG0974|consen 175 EGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVL-----G----CTGFGHSARVWACCFLPNRIITVGEDCTCRVWGV 245 (967)
T ss_pred CCceEEEEEccCCcEEEEEecCcceeeeeccccccc-----C----cccccccceeEEEEeccceeEEeccceEEEEEec
Confidence 999999999999999999999999999999997662 2 3789999999999999999999999999999999
Q ss_pred CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeec
Q 000602 336 DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT 415 (1398)
Q Consensus 336 ~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 415 (1398)
++..+.++.+|.++.||.++..++...++|++.||.+++|++.+......... ......+..
T Consensus 246 ~~~~l~~y~~h~g~~iw~~~~~~~~~~~vT~g~Ds~lk~~~l~~r~~e~~~~~-----------~~~~~s~~k------- 307 (967)
T KOG0974|consen 246 NGTQLEVYDEHSGKGIWKIAVPIGVIIKVTGGNDSTLKLWDLNGRGLEGHVEQ-----------SSLLSSIVK------- 307 (967)
T ss_pred ccceehhhhhhhhcceeEEEEcCCceEEEeeccCcchhhhhhhccccccceee-----------eeeecchhh-------
Confidence 99999999999999999999999999999999999999999965432211100 000000000
Q ss_pred cCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCC-CCCcCCCCcEEEEEeCCC
Q 000602 416 DSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE-PKYPCGIDDWVALGDGKG 494 (1398)
Q Consensus 416 ~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~-~~~s~~~~~~la~gs~dG 494 (1398)
.....|.....++..+..+..+. +... ....++..++..... +..+...+.+++.++..+
T Consensus 308 ------l~~~~f~k~~~~~~~~~~~~~~~--~~~~-----------~~~~~l~~~~~~s~~~i~~~~~~~~~v~~~~~k~ 368 (967)
T KOG0974|consen 308 ------LKDDQFVKCDTLLNFANHGGKLS--ILGN-----------KGEKELITFESDSMLRIIFSCTNDDWVAHMSNKG 368 (967)
T ss_pred ------hcceeeeehHHHHHHHhcCCeEe--eccc-----------ccccceeeeeeccCccceehccccceeeeccCCC
Confidence 01112222222222232222110 1010 111222233333222 334456678899999999
Q ss_pred CEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeee
Q 000602 495 NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAE 574 (1398)
Q Consensus 495 ~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~ 574 (1398)
.+.+.............+...+...........+ +..+=.-++..++|......+. ......+...+.
T Consensus 369 ~~~v~~~~~~~~~~~~~~h~~~s~~~~~~~~~~~--------~~~~~~~~g~~~~r~~~~~~~~----~ad~~~i~~~~~ 436 (967)
T KOG0974|consen 369 DIYVAWHQNTIVITTSSLHRKLSANPISQVCEAS--------YVASKLIDGSIQVRNLSGSLES----FADVLNIRSLKE 436 (967)
T ss_pred cEEEEEeecccCccchhHHHHHhhCcccceeeee--------eehhhccCCcchhhhhhccccc----ccceeEEeeeee
Confidence 8888766543222222211122222222221111 1222234566777764432211 113344556666
Q ss_pred eccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceE
Q 000602 575 FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654 (1398)
Q Consensus 575 ~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~ 654 (1398)
|......+++|+.-.+.+..+++|++.|++.+|++..+.. ....+.| .+|+-++++++.+..+.++..+
T Consensus 437 f~~~~~~~~~~l~~~~~~~~~l~Gs~~g~lv~~~l~~~~~------~~~~~~~-----~~~~~~~~~si~~~~~kdn~~~ 505 (967)
T KOG0974|consen 437 FRLPFAFRIPCLTSVVEDNLILIGSRHGELVLYNLDEPND------DIVLSLS-----RSHELDTGSSITCIRSKDNSAI 505 (967)
T ss_pred eccccCCCCcceecccCcceEEEccCcCcEEEecCCCCCc------cceeecc-----CcccccccccEEEEecCCCcEE
Confidence 6677788899999999899999999999999999987522 2222211 1566688999999998899999
Q ss_pred EEEEcCCccEEEEEEecCCcceeeeeeeeeeeeeeeEeEecCCCccCcccceEEeeeccccEEEEeCccceEEEEeeccC
Q 000602 655 IRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGG 734 (1398)
Q Consensus 655 L~S~g~DG~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG 734 (1398)
+.++++||++.++++........+..+...+....+....++.+..+...+.+++||++..|++||++++.+++...|||
T Consensus 506 ~~~~g~dg~~~~~~~~r~~~~n~~~~L~~~~~~s~v~~g~~~~~~~~~k~n~~~~gf~st~f~l~n~T~~~~i~~~~cGg 585 (967)
T KOG0974|consen 506 FMTTGRDGYWSTIELIRGGTTNYPMELMNKKSFSTVSSGALPSKFINWKGNLLIVGFYSTSFILWNETNETPIFETYCGG 585 (967)
T ss_pred EEEecCCcEEEEEEEecCccccccceeeeeccCCeeeecchhhhhccCCCceEEEEEEeccceEeccccCceeEEEEeCC
Confidence 99999999999999998776555555555554333333344433333447789999999999999999999999999999
Q ss_pred cccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCccccccccCCCcceeeEEEeecccccccccccccCCCCCe
Q 000602 735 WRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSS 814 (1398)
Q Consensus 735 ~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~ 814 (1398)
.||.|+|.. ......+.+.+.+..+++...-.... ...+..+.|+|+|+++.|.+-++..- ......+.
T Consensus 586 ~hr~wal~g---~t~~~~~~re~~~~~~i~~~~~~~~~----s~~~~nglh~~~irai~~~~~~ttv~----~~~~~~~t 654 (967)
T KOG0974|consen 586 SHRIWALNG---STDNQFNFREIASSQLIRQKIDNLSR----NSWISNGLHGREIRAISFSPYSTTVS----LDEHLSGS 654 (967)
T ss_pred eeEEeecCC---ccccceeeeecccccEEEEEeecccc----cccccCCCCCCceeeeEeccccccee----cccCCcce
Confidence 999999963 23334445545445454432111111 12455678888888888875311110 11123355
Q ss_pred EEEEeecCCeEEEEEecCCCc-ccccccccccccCccceeeeeeeeeeccccccccCCcccccccccccccCCCCEEEEE
Q 000602 815 WIATGCEDGTVRLTRYSPGFE-NWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLIS 893 (1398)
Q Consensus 815 ~laTGseD~tIrl~~~~~~~~-~~~~~~~l~~H~~gsav~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S 893 (1398)
.++++++|+++++-.+..... ...+.+... +......++++
T Consensus 655 ~~~~a~~~~~~~l~sv~~v~~~~~~t~~~~~--------------------------------------d~~~g~~~~~~ 696 (967)
T KOG0974|consen 655 AVRSASCDGNIKLISVIFVNENLQCTDWYDE--------------------------------------DDENGTVYLLT 696 (967)
T ss_pred eEEeeeccccceeEEEEecccCcccCCCCCc--------------------------------------CCCCCcEEEEE
Confidence 666666776666655443111 011111111 12223466666
Q ss_pred ecccceEEEEEEEecCccccccceeecccccCCCccccccCCCCccceeecccCCCCcccCCCCcccccccccccccccc
Q 000602 894 VGAKRVLTSWLLRHRGIDEMEETTVESKYNRNGNDLELSLGASSSLSFQWLSTDMPTKNSSTHGKKKDMKKVDHITRNIA 973 (1398)
Q Consensus 894 ~g~d~~i~vW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 973 (1398)
+++++.++ .|...++ .+|..++.| ++..+||+..+
T Consensus 697 ~~gkr~i~----------------~~~~l~~----------~s~e~~~~~------~~s~~~~~~~~------------- 731 (967)
T KOG0974|consen 697 GGGKRKIS----------------SENILWR----------SSHELDEVW------DRSLRRHRPVK------------- 731 (967)
T ss_pred eccceeec----------------hhhhHhh----------hhhhhcccC------hhHhhhcCcee-------------
Confidence 77777666 1333333 555666555 44445555444
Q ss_pred ccccccccCccccchhhhHhhhccCCCCCCCceEEEEEEEEeecCCceeeEEEEEEEeCcchhheeeccc-cccceeeee
Q 000602 974 SMNANAKTGSISSESREREAKAFLGDKYEDDWRYLAVTAFLVKCPGSRLTVCFVVVACSDATLALRALIL-PLRLWFEVA 1052 (1398)
Q Consensus 974 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~v~~~~~~~~~~~~~~~~~~~a~sd~~~~~~~~~~-~~~~~~~~~ 1052 (1398)
++|++|||++....+.+++. .+|++++||+++++.+-+.. ..+..+.+.
T Consensus 732 ---------------------------~~p~~Ri~~v~v~~laq~g~---~~lv~s~~s~~~ti~i~~~~~~~~~l~~l~ 781 (967)
T KOG0974|consen 732 ---------------------------YDPETRIMDVAVCELAQEGL---GVLVASLVSSGSTIKIFLYDNSGRILQLLI 781 (967)
T ss_pred ---------------------------ECCCccEEEeeeeeecccCC---cceEEEEecCCceEEEEeecccchhhhhee
Confidence 79999999999998877764 46799999877776655544 344567777
Q ss_pred ccccCCCceEEEeeeeecccCCCccccccCCEEEEEEecccCcEEEEeccchhhHhhhhhcccceecccccccCCCCCCC
Q 000602 1053 MLVPLSSPVLALQHVIMPIHLPSKENVQIGSSYFVISGATDGSIAFWDVTGHVETFVQQVSTLHIENFIDCQKRPRTGRG 1132 (1398)
Q Consensus 1053 ~~~~~~~~vl~~~~~~~~~~~~~~~~~~~~~~~~~~s~~tdg~i~~wd~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1132 (1398)
+..+++.|.|.+. .++.+ +...+.+++.+||+|||+++|||.+ +|.+...+..+...||+-++|+|++
T Consensus 782 ~s~~~k~~~L~l~---~~v~~----~~~~~~vv~~tSg~~~~s~~fW~~~-----~v~~~~~i~i~~~~~~gv~s~~g~~ 849 (967)
T KOG0974|consen 782 ESRHEKTCCLKLH---EFVAE----APSKSLVVVLTSGATDGSNAFWDDG-----TVNLPDSIWIEPPHDSGVKSRLGTP 849 (967)
T ss_pred eeeecccEEEEeh---hhhhc----CCcceEEEEEecccccceeeeeecc-----ccccccceeeccccccCccccccCC
Confidence 8899999999986 22222 3445567799999999999999999 4445566777788888888888877
Q ss_pred CCCCcccccccCCCCCCCCCCcceeeccCCCcccccccCcccccCCCCCcccccCccccCCccccccCCCCCccccccee
Q 000602 1133 SQGGRWWRNLRHTRPNKESGSSIVSVRTEGGVQNHDACGVSANVNDTENCTVEDGQIASCEPELNAVNSTSETSEIRPIH 1212 (1398)
Q Consensus 1133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1212 (1398)
+-+-
T Consensus 850 s~~l---------------------------------------------------------------------------- 853 (967)
T KOG0974|consen 850 SLVL---------------------------------------------------------------------------- 853 (967)
T ss_pred cccc----------------------------------------------------------------------------
Confidence 5222
Q ss_pred eeecccccccceEEEeeccccccCCCCeEEEEEEccCCCeEEEEEEEeeccCCCCCccceecccccCCCCchhhhhhhhc
Q 000602 1213 ILNNAHQSGVNCLHVSKIKNCWSTECGFHFYVVSGGDDQAIHCLRVDLSLLSRGPDSEIIAADVINSNSESEDVKSLIYY 1292 (1398)
Q Consensus 1213 ~~~~~h~~g~n~l~~~~~~~~~~~~~~~~~~~~sggdd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1292 (1398)
.+|..|+|.+|.-...+. .-...++-=++++|++.+.-.+.+..+ ...
T Consensus 854 ---~i~~~G~d~~~s~~~~~~-------~~~sss~~lt~~~~~~v~a~~~~ss~~-------------~v~--------- 901 (967)
T KOG0974|consen 854 ---TISTGGCDSLHSLPTLEL-------EDLSSSSSLTNSLHVFVLAAEMASSVS-------------LVL--------- 901 (967)
T ss_pred ---eeeecccccccccccccc-------ccccccceeccchhheeehhhhcccce-------------eee---------
Confidence 345555555554433221 124445555666666655544333211 000
Q ss_pred ccccCCcceEEEEEeeccccccccceeeEEE-eCcEEEEecccceEEEEEeeecccceeeeeeEeecCC
Q 000602 1293 GQEQNQNYRIRFYNYFRATSAHSSAIKGIWT-DGTWVFSTGLDQRIRFWLLEEHSILSQHAHLVVSVPE 1360 (1398)
Q Consensus 1293 ~~~~~~~~~~~~~~~~~~~~~~~~~v~g~~~-~~~~~~s~~~dqr~~~w~~~~~~~~~~~~~~~~~v~~ 1360 (1398)
+.....-+++.-.++||.+|.++.++..+ .+..++|.+.|||+.||+++ .+.+++..+.+.||||
T Consensus 902 --~~~ts~~l~~s~~~~I~c~~vt~~~~s~il~~~~~Vsg~idq~l~~~~~g-~g~~~f~~~tl~~v~d 967 (967)
T KOG0974|consen 902 --EIGTSPVLRVSEDSRIPCWHVTPVTLSKILEPVAVVSGSIDQSLTCWRLG-IGEPTFMNSTLSHVPD 967 (967)
T ss_pred --eecceeeeeecccCCcceEEEcCCCccccccceeEeecccccchhhhhhc-CCCccccCceeEecCC
Confidence 00122336778889999999999999998 56899999999999999999 9999999999999997
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-43 Score=388.50 Aligned_cols=528 Identities=18% Similarity=0.261 Sum_probs=390.3
Q ss_pred CcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EEEEEEeeeCccEEEEEE
Q 000602 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISC 73 (1398)
Q Consensus 4 ~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~--~l~~~~~~~~~~V~~i~f 73 (1398)
+.|.+-+++++. |..+++-..|| |. |-|+|+|. .|.|||||....+ +-.+|+++.+ +|..|+|
T Consensus 39 ksv~ir~i~~~~~~~iYtEH~~~vtVAkyS--Ps----G~yiASGD~sG~vRIWdtt~~~hiLKnef~v~aG-~I~Di~W 111 (603)
T KOG0318|consen 39 KSVIIRNIDNPASVDIYTEHAHQVTVAKYS--PS----GFYIASGDVSGKVRIWDTTQKEHILKNEFQVLAG-PIKDISW 111 (603)
T ss_pred CEEEEEECCCccceeeeccccceeEEEEeC--CC----ceEEeecCCcCcEEEEeccCcceeeeeeeeeccc-cccccee
Confidence 346666666654 88999999999 98 88999998 6999999986533 3357788777 8999999
Q ss_pred eccccccCCCCccceeEEEEEcC-----CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC-
Q 000602 74 NFINCTEGSVSTRVTFEVALFGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN- 147 (1398)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd-----~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg- 147 (1398)
+ +|+ +.|++.|+ +.+.+||-- .-+..+.||...|++++|-| ..
T Consensus 112 d-------~ds----~RI~avGEGrerfg~~F~~DSG-----------------~SvGei~GhSr~ins~~~Kp---sRP 160 (603)
T KOG0318|consen 112 D-------FDS----KRIAAVGEGRERFGHVFLWDSG-----------------NSVGEITGHSRRINSVDFKP---SRP 160 (603)
T ss_pred C-------CCC----cEEEEEecCccceeEEEEecCC-----------------CccceeeccceeEeeeeccC---CCc
Confidence 9 888 55555553 345555543 33456779999999999998 44
Q ss_pred cEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCC
Q 000602 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHA 227 (1398)
Q Consensus 148 ~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~ 227 (1398)
-+++||+.|++|.+|+-.--+.-.++..|.+ .+++++| +|||.++++.+.||+|.+||-.
T Consensus 161 fRi~T~sdDn~v~ffeGPPFKFk~s~r~Hsk-FV~~VRy---sPDG~~Fat~gsDgki~iyDGk---------------- 220 (603)
T KOG0318|consen 161 FRIATGSDDNTVAFFEGPPFKFKSSFREHSK-FVNCVRY---SPDGSRFATAGSDGKIYIYDGK---------------- 220 (603)
T ss_pred eEEEeccCCCeEEEeeCCCeeeeeccccccc-ceeeEEE---CCCCCeEEEecCCccEEEEcCC----------------
Confidence 4799999999999998655554555555544 7888888 8999999999999999999988
Q ss_pred CCCCCCcceeeecccccceeEEEEEe---CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEE
Q 000602 228 HGSSSDFKCFKLQDQQHTAVNLFRLV---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1398)
Q Consensus 228 ~~~~~~~~~i~i~~~~~~~~~~~~l~---gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1398)
++..+..+. +|.+.|++|+|+||+..++|+|.|.+++|||+.+.++ ++.+ .
T Consensus 221 -----------------tge~vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~sl-----v~t~----~ 274 (603)
T KOG0318|consen 221 -----------------TGEKVGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSL-----VSTW----P 274 (603)
T ss_pred -----------------CccEEEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccce-----EEEe----e
Confidence 556666666 8999999999999999999999999999999999876 3322 1
Q ss_pred ecCC--ccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCC
Q 000602 305 YGHN--ARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1398)
Q Consensus 305 ~gh~--~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~ 381 (1398)
.+.+ ..-..+.|....|++-+.+|+|-+++. ++..+..+.+|.. +|++++.+|++++|++|+.||.|.-|+.....
T Consensus 275 ~~~~v~dqqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK-~ITaLtv~~d~~~i~SgsyDG~I~~W~~~~g~ 353 (603)
T KOG0318|consen 275 MGSTVEDQQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNK-SITALTVSPDGKTIYSGSYDGHINSWDSGSGT 353 (603)
T ss_pred cCCchhceEEEEEEeCCeEEEEEcCcEEEEecccCCChhheeccccc-ceeEEEEcCCCCEEEeeccCceEEEEecCCcc
Confidence 1221 334556666899999999999999999 7889999999998 79999999999999999999999999994322
Q ss_pred cccc--cCCCcc---ccccCCccEEEeeeCCCccceeecc---------CCCCcEEEEEEecCCeEEEEEcCCcEEEEEe
Q 000602 382 PGSL--ESHPEA---KEFNGRTEIFSIKIPNFSEQIRLTD---------SKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1398)
Q Consensus 382 l~~l--~~~~~~---v~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~V~~lafs~dg~llv~t~~g~i~~~~l 447 (1398)
-..+ ++|... +......+++++...+..+.+...+ .-.....+++..+++.+++.+..+.+..++
T Consensus 354 ~~~~~g~~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~- 432 (603)
T KOG0318|consen 354 SDRLAGKGHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQ- 432 (603)
T ss_pred ccccccccccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEe-
Confidence 2222 233321 2222335566655444332221111 011223478888887666666555555322
Q ss_pred ecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEE
Q 000602 448 CDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGT 527 (1398)
Q Consensus 448 ~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~ 527 (1398)
+... +....-.....++++ .+++..+++|..||+++||.+..+.+...... ..+...+.
T Consensus 433 -~~~~-----~~~~~~~y~~s~vAv--------~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~-----~~h~a~iT-- 491 (603)
T KOG0318|consen 433 -DQTK-----VSSIPIGYESSAVAV--------SPDGSEVAVGGQDGKVHVYSLSGDELKEEAKL-----LEHRAAIT-- 491 (603)
T ss_pred -cCCc-----ceeeccccccceEEE--------cCCCCEEEEecccceEEEEEecCCcccceeee-----ecccCCce--
Confidence 2221 222333444455555 47789999999999999999988765432211 11222232
Q ss_pred EEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEE
Q 000602 528 YWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1398)
Q Consensus 528 ~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iw 607 (1398)
.+++|||+.||+++...+.+.+|++..... ....+ .=|+++|.|++|||++.++|+|+-|-+|.||
T Consensus 492 ~vaySpd~~yla~~Da~rkvv~yd~~s~~~-------------~~~~w-~FHtakI~~~aWsP~n~~vATGSlDt~Viiy 557 (603)
T KOG0318|consen 492 DVAYSPDGAYLAAGDASRKVVLYDVASREV-------------KTNRW-AFHTAKINCVAWSPNNKLVATGSLDTNVIIY 557 (603)
T ss_pred EEEECCCCcEEEEeccCCcEEEEEcccCce-------------eccee-eeeeeeEEEEEeCCCceEEEeccccceEEEE
Confidence 368999999999999999999999986532 01111 1389999999999999999999999999999
Q ss_pred ECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEe
Q 000602 608 PLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1398)
Q Consensus 608 d~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~ 670 (1398)
++++.. .. -..+++|- .+|++|.|.. ...|+|+|.|-+|++|.+.
T Consensus 558 sv~kP~-------~~------i~iknAH~-~gVn~v~wld----e~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 558 SVKKPA-------KH------IIIKNAHL-GGVNSVAWLD----ESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred EccChh-------hh------eEeccccc-cCceeEEEec----CceEEeccCcceeEEeccc
Confidence 998741 11 13467887 5699999993 5789999999999999874
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-42 Score=396.22 Aligned_cols=582 Identities=16% Similarity=0.226 Sum_probs=422.1
Q ss_pred EEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeE-EEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEE
Q 000602 23 LCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTL-IRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1398)
Q Consensus 23 lafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~-l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~v 101 (1398)
++|+ ++ |+.|++..+..|.+-|+++++. +..........|.+++.. ||.. .++.++-.+.+++
T Consensus 25 ~~~s--~n----G~~L~t~~~d~Vi~idv~t~~~~l~s~~~ed~d~ita~~l~-------~d~~---~L~~a~rs~llrv 88 (775)
T KOG0319|consen 25 VAWS--SN----GQHLYTACGDRVIIIDVATGSIALPSGSNEDEDEITALALT-------PDEE---VLVTASRSQLLRV 88 (775)
T ss_pred eeEC--CC----CCEEEEecCceEEEEEccCCceecccCCccchhhhheeeec-------CCcc---EEEEeeccceEEE
Confidence 7899 88 9999999998999999999987 444444444579999999 8862 4555556899999
Q ss_pred EEecCCCCCCCCCCCcccccceeeeeccc-CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcce
Q 000602 102 FELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1398)
Q Consensus 102 wdl~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~ 180 (1398)
|++.+ +++++..+. |..+|.-++|.| .+..|++|+.|+.|+|||+..+.+...++++.+ .
T Consensus 89 ~~L~t---------------gk~irswKa~He~Pvi~ma~~~---~g~LlAtggaD~~v~VWdi~~~~~th~fkG~gG-v 149 (775)
T KOG0319|consen 89 WSLPT---------------GKLIRSWKAIHEAPVITMAFDP---TGTLLATGGADGRVKVWDIKNGYCTHSFKGHGG-V 149 (775)
T ss_pred EEccc---------------chHhHhHhhccCCCeEEEEEcC---CCceEEeccccceEEEEEeeCCEEEEEecCCCc-e
Confidence 99986 567788888 999999999999 899999999999999999999999999988654 6
Q ss_pred EEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEE
Q 000602 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1398)
Q Consensus 181 ~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1398)
+.++.|++. +....|++|..|+++++||+.. ...++..+..|.+.|+
T Consensus 150 Vssl~F~~~-~~~~lL~sg~~D~~v~vwnl~~--------------------------------~~tcl~~~~~H~S~vt 196 (775)
T KOG0319|consen 150 VSSLLFHPH-WNRWLLASGATDGTVRVWNLND--------------------------------KRTCLHTMILHKSAVT 196 (775)
T ss_pred EEEEEeCCc-cchhheeecCCCceEEEEEccc--------------------------------CchHHHHHHhhhhhee
Confidence 778888664 3457899999999999999981 1225677889999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-------CCEEEEEeCCCcEEEE
Q 000602 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 261 ~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-------~~~l~sgs~Dg~i~vW 333 (1398)
+++|++|+..+++++.|+.+.+||+.+.+. .+ ..+-...+-++.+- +.+++|+|.+|.+++|
T Consensus 197 sL~~~~d~~~~ls~~RDkvi~vwd~~~~~~-----l~------~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~ 265 (775)
T KOG0319|consen 197 SLAFSEDSLELLSVGRDKVIIVWDLVQYKK-----LK------TLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYW 265 (775)
T ss_pred eeeeccCCceEEEeccCcEEEEeehhhhhh-----hh------eechhhheeeEEEechhcCCcceEEEEecCCceEEEE
Confidence 999999999999999999999999966554 11 11112223333332 3599999999999999
Q ss_pred cC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccc
Q 000602 334 GS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1398)
Q Consensus 334 d~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 411 (1398)
|. .++++...+....+.+..+...+....++....|..+.++|.+. ...+.
T Consensus 266 d~es~~~~~~~~~~~~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~--------------------------- 318 (775)
T KOG0319|consen 266 DSESGKCVYKQRQSDSEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQ--------------------------- 318 (775)
T ss_pred ecccchhhhhhccCCchhhhcceeccccCceEEEEccceEEEEEccccEEehh---------------------------
Confidence 99 66666554443233477777777777777888899999998742 11111
Q ss_pred eeeccCCCCcEEEEEEec-C-CeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEE
Q 000602 412 IRLTDSKSEYVRCLHLTS-E-DTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (1398)
Q Consensus 412 ~~~~~~~~~~V~~lafs~-d-g~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~ 489 (1398)
+-+..+.|..++|.. + ..+.++++.+.+..+ +..+..+ .+..+| ...+.++++ ...+.++++
T Consensus 319 ---ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y---~~~~~~c-~ii~GH-~e~vlSL~~--------~~~g~llat 382 (775)
T KOG0319|consen 319 ---IVGYNDEILDMKFLGPEESHLAVATNSPELRLY---TLPTSYC-QIIPGH-TEAVLSLDV--------WSSGDLLAT 382 (775)
T ss_pred ---hcCCchhheeeeecCCccceEEEEeCCCceEEE---ecCCCce-EEEeCc-hhheeeeee--------cccCcEEEE
Confidence 112334566777665 2 357778888888755 4444333 477777 556777764 133579999
Q ss_pred EeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCcccee
Q 000602 490 GDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNV 569 (1398)
Q Consensus 490 gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l 569 (1398)
|+.|..+++|.++++..... ... ....+...++.+.+....-.+|++++.|+++++|+++...+... ..
T Consensus 383 ~sKD~svilWr~~~~~~~~~---~~a-~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~-------~~ 451 (775)
T KOG0319|consen 383 GSKDKSVILWRLNNNCSKSL---CVA-QANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF-------PI 451 (775)
T ss_pred ecCCceEEEEEecCCcchhh---hhh-hhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-------cc
Confidence 99999999999955443211 011 12222333333333234456899999999999999987322111 11
Q ss_pred eeeeee-ccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEee
Q 000602 570 FLVAEF-SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKL 648 (1398)
Q Consensus 570 ~l~~~~-~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~ 648 (1398)
.+...+ ...|++.|+|++++|+.+++|+||.|.+.+||+++.. ....++.| |. -+|-+|.|+
T Consensus 452 ~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le~~-------------~l~~vLsG-H~-RGvw~V~Fs-- 514 (775)
T KOG0319|consen 452 VLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLEQL-------------RLLGVLSG-HT-RGVWCVSFS-- 514 (775)
T ss_pred eehhhHHHHhhcccccceEecCCCceEEecccccceeeecccCc-------------eEEEEeeC-Cc-cceEEEEec--
Confidence 111111 3489999999999999999999999999999999853 33445543 43 579999999
Q ss_pred CCCceEEEEEcCCccEEEEEEecCCcceeeeeeeeeeeeeeeEeEecCCCccCcccceEEeeeccccEEEEeCccceEEE
Q 000602 649 RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVV 728 (1398)
Q Consensus 649 ~~~~~~L~S~g~DG~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~ 728 (1398)
+.+..|+|+|.|++|+||.++.......|.+ +....+...+..+ +..++.+-.++.+++||..+.+.++
T Consensus 515 -~~dq~laT~SgD~TvKIW~is~fSClkT~eG----H~~aVlra~F~~~------~~qliS~~adGliKlWnikt~eC~~ 583 (775)
T KOG0319|consen 515 -KNDQLLATCSGDKTVKIWSISTFSCLKTFEG----HTSAVLRASFIRN------GKQLISAGADGLIKLWNIKTNECEM 583 (775)
T ss_pred -cccceeEeccCCceEEEEEeccceeeeeecC----ccceeEeeeeeeC------CcEEEeccCCCcEEEEeccchhhhh
Confidence 4558899999999999999987643323321 1122333333332 4567888889999999988776333
Q ss_pred EeeccCcccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCccccccccCCCcceeeEEEeeccccccccccccc
Q 000602 729 QIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKS 808 (1398)
Q Consensus 729 ~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~ 808 (1398)
++ -.|...|.++..++.
T Consensus 584 tl----------------------------------------------------D~H~DrvWaL~~~~~----------- 600 (775)
T KOG0319|consen 584 TL----------------------------------------------------DAHNDRVWALSVSPL----------- 600 (775)
T ss_pred hh----------------------------------------------------hhccceeEEEeecCc-----------
Confidence 22 278888999987744
Q ss_pred CCCCCeEEEEeecCCeEEEEEecC
Q 000602 809 ALNKSSWIATGCEDGTVRLTRYSP 832 (1398)
Q Consensus 809 ~~~~~~~laTGseD~tIrl~~~~~ 832 (1398)
...++||+-|+.|-+|.=.+
T Consensus 601 ----~~~~~tgg~Dg~i~~wkD~T 620 (775)
T KOG0319|consen 601 ----LDMFVTGGGDGRIIFWKDVT 620 (775)
T ss_pred ----cceeEecCCCeEEEEeecCc
Confidence 44899999999999997543
|
|
| >KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-41 Score=390.48 Aligned_cols=543 Identities=17% Similarity=0.220 Sum_probs=408.6
Q ss_pred EEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEE
Q 000602 71 ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1398)
Q Consensus 71 i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~L 150 (1398)
++|+ ++| ..|++.-...|.+.|+.+.. ......-..-.+.|++++..| |+.+|
T Consensus 25 ~~~s-------~nG----~~L~t~~~d~Vi~idv~t~~-------------~~l~s~~~ed~d~ita~~l~~---d~~~L 77 (775)
T KOG0319|consen 25 VAWS-------SNG----QHLYTACGDRVIIIDVATGS-------------IALPSGSNEDEDEITALALTP---DEEVL 77 (775)
T ss_pred eeEC-------CCC----CEEEEecCceEEEEEccCCc-------------eecccCCccchhhhheeeecC---CccEE
Confidence 7888 888 56666656778889998744 111122234557899999999 99999
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000602 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1398)
Q Consensus 151 atgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1398)
++++....+++|++.+++.+...+..+..++..+++ +|.+.++++|+.|+.++|||+.
T Consensus 78 ~~a~rs~llrv~~L~tgk~irswKa~He~Pvi~ma~---~~~g~LlAtggaD~~v~VWdi~------------------- 135 (775)
T KOG0319|consen 78 VTASRSQLLRVWSLPTGKLIRSWKAIHEAPVITMAF---DPTGTLLATGGADGRVKVWDIK------------------- 135 (775)
T ss_pred EEeeccceEEEEEcccchHhHhHhhccCCCeEEEEE---cCCCceEEeccccceEEEEEee-------------------
Confidence 999999999999999999998888866667778888 6778999999999999999998
Q ss_pred CCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC--EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~--~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~ 308 (1398)
.+...+.|+||.+.|.++.|+|+-. .|++|..|+++++||+.+... ++ ..+..|.
T Consensus 136 --------------~~~~th~fkG~gGvVssl~F~~~~~~~lL~sg~~D~~v~vwnl~~~~t----cl-----~~~~~H~ 192 (775)
T KOG0319|consen 136 --------------NGYCTHSFKGHGGVVSSLLFHPHWNRWLLASGATDGTVRVWNLNDKRT----CL-----HTMILHK 192 (775)
T ss_pred --------------CCEEEEEecCCCceEEEEEeCCccchhheeecCCCceEEEEEcccCch----HH-----HHHHhhh
Confidence 7888999999999999999999765 489999999999999996543 12 3778999
Q ss_pred ccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCC-----CCEEEEEEcCCcEEEEEcCC-
Q 000602 309 ARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-----SSLLVTAGFDSAIKVHQFQA- 379 (1398)
Q Consensus 309 ~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spd-----g~~latgg~Dg~I~iwdl~~- 379 (1398)
+.|++++|. +..+++++.|..+.|||+ +-+.++++..... +.++.+-++ +.+++|+|.+|.+++||.++
T Consensus 193 S~vtsL~~~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~--~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~ 270 (775)
T KOG0319|consen 193 SAVTSLAFSEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYES--LESVVRLREELGGKGEYIITAGGSGVVQYWDSESG 270 (775)
T ss_pred hheeeeeeccCCceEEEeccCcEEEEeehhhhhhhheechhhh--eeeEEEechhcCCcceEEEEecCCceEEEEecccc
Confidence 999999998 578999999999999999 6677777766654 888888777 67999999999999999954
Q ss_pred CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEE
Q 000602 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1398)
Q Consensus 380 ~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~ 459 (1398)
.++..... ++. .+....+.....+++++.+.+-.++.++ ..+..-..-+
T Consensus 271 ~~~~~~~~------------------~~~----------~e~~~~~~~~~~~~~l~vtaeQnl~l~d---~~~l~i~k~i 319 (775)
T KOG0319|consen 271 KCVYKQRQ------------------SDS----------EEIDHLLAIESMSQLLLVTAEQNLFLYD---EDELTIVKQI 319 (775)
T ss_pred hhhhhhcc------------------CCc----------hhhhcceeccccCceEEEEccceEEEEE---ccccEEehhh
Confidence 32222111 100 0112334445566788888888887553 3332211122
Q ss_pred eecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEE
Q 000602 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (1398)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~ 539 (1398)
-+. ..+|..|.+. .++.+.+|++++.+.+++|++.+..+. ...++...++++ ....+|-+|+
T Consensus 320 vG~-ndEI~Dm~~l-------G~e~~~laVATNs~~lr~y~~~~~~c~--------ii~GH~e~vlSL--~~~~~g~lla 381 (775)
T KOG0319|consen 320 VGY-NDEILDMKFL-------GPEESHLAVATNSPELRLYTLPTSYCQ--------IIPGHTEAVLSL--DVWSSGDLLA 381 (775)
T ss_pred cCC-chhheeeeec-------CCccceEEEEeCCCceEEEecCCCceE--------EEeCchhheeee--eecccCcEEE
Confidence 222 3456666553 366889999999999999988765543 123333334432 2234667999
Q ss_pred EEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCC-CEEEEecCCCeEEEEECCCccccccc
Q 000602 540 TADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED-EVLFCGDLRGNLVLFPLLRDLLNDKS 618 (1398)
Q Consensus 540 s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg-~lLatGs~dGtI~Iwd~~~~~~~~~~ 618 (1398)
|++.|.++++|++++... ...+.+. ..+|...|.+++++..+ .+|++++.|+++++|++..... .
T Consensus 382 t~sKD~svilWr~~~~~~----------~~~~~a~-~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~-~-- 447 (775)
T KOG0319|consen 382 TGSKDKSVILWRLNNNCS----------KSLCVAQ-ANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKE-T-- 447 (775)
T ss_pred EecCCceEEEEEecCCcc----------hhhhhhh-hcccccccceeeecccCccEEEEecCCceEEEecCCCccc-c--
Confidence 999999999999954321 1122232 45899999999998654 6999999999999999987211 0
Q ss_pred ccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCcceeeeeeeeeeeeeeeEeEecCCC
Q 000602 619 VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENN 698 (1398)
Q Consensus 619 ~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 698 (1398)
..+..+ ...+...+|+ ..|++|++. ++...|+|+|.|.+.++|+++....
T Consensus 448 -~~~~~~-~~~~t~~aHd-KdIN~Vaia---~ndkLiAT~SqDktaKiW~le~~~l------------------------ 497 (775)
T KOG0319|consen 448 -AFPIVL-TCRYTERAHD-KDINCVAIA---PNDKLIATGSQDKTAKIWDLEQLRL------------------------ 497 (775)
T ss_pred -ccccee-hhhHHHHhhc-ccccceEec---CCCceEEecccccceeeecccCceE------------------------
Confidence 011111 1123445888 669999999 5568999999999999999873210
Q ss_pred ccCcccceEEeeeccccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCcccc
Q 000602 699 SIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPK 778 (1398)
Q Consensus 699 ~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~ 778 (1398)
. .+
T Consensus 498 --------~------------------------------------------------------~v--------------- 500 (775)
T KOG0319|consen 498 --------L------------------------------------------------------GV--------------- 500 (775)
T ss_pred --------E------------------------------------------------------EE---------------
Confidence 0 00
Q ss_pred ccccCCCcceeeEEEeecccccccccccccCCCCCeEEEEeecCCeEEEEEecCCCcccccccccccccCccceeeeeee
Q 000602 779 NLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFV 858 (1398)
Q Consensus 779 ~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~laTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~f~ 858 (1398)
..+|.|.|.||.|++. .+++||+|-|+|||||.++. ..+++++.+|. ++|-...|+
T Consensus 501 ---LsGH~RGvw~V~Fs~~---------------dq~laT~SgD~TvKIW~is~----fSClkT~eGH~--~aVlra~F~ 556 (775)
T KOG0319|consen 501 ---LSGHTRGVWCVSFSKN---------------DQLLATCSGDKTVKIWSIST----FSCLKTFEGHT--SAVLRASFI 556 (775)
T ss_pred ---eeCCccceEEEEeccc---------------cceeEeccCCceEEEEEecc----ceeeeeecCcc--ceeEeeeee
Confidence 1289999999999965 57999999999999999987 66899999999 999999997
Q ss_pred eeeccccccccCCcccccccccccccCCCCEEEEEecccceEEEEEEEec
Q 000602 859 SEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHR 908 (1398)
Q Consensus 859 ~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~~~ 908 (1398)
. ++..|+|+|+|+-||+|++...
T Consensus 557 ~---------------------------~~~qliS~~adGliKlWnikt~ 579 (775)
T KOG0319|consen 557 R---------------------------NGKQLISAGADGLIKLWNIKTN 579 (775)
T ss_pred e---------------------------CCcEEEeccCCCcEEEEeccch
Confidence 2 3567899999999999998776
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-38 Score=365.43 Aligned_cols=558 Identities=18% Similarity=0.264 Sum_probs=396.5
Q ss_pred eEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1398)
Q Consensus 89 ~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~ 168 (1398)
+.+++.+...|.+||+.+++. -+.+ ........|+|++-+| +..+||+|.+||.|+||+..++.
T Consensus 35 r~va~~a~E~vn~WdlRtge~------------~~~l-~~~~~k~evt~l~~~~---d~l~lAVGYaDGsVqif~~~s~~ 98 (888)
T KOG0306|consen 35 RAVAVSALEQVNIWDLRTGEI------------EKKL-ILLKKKAEVTCLRSSD---DILLLAVGYADGSVQIFSLESEE 98 (888)
T ss_pred cEEEEeccccEeEEeeecchh------------hhhh-hhhcccceEEEeeccC---CcceEEEEecCceEEeeccCCCc
Confidence 688887888999999998531 0111 1122336899999988 88999999999999999999988
Q ss_pred EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
.+.++.+|.. .+..+.| +..|.+|++|+.|+.|.+||+- ...-
T Consensus 99 ~~~tfngHK~-AVt~l~f---d~~G~rlaSGskDt~IIvwDlV---------------------------------~E~G 141 (888)
T KOG0306|consen 99 ILITFNGHKA-AVTTLKF---DKIGTRLASGSKDTDIIVWDLV---------------------------------GEEG 141 (888)
T ss_pred eeeeeccccc-ceEEEEE---cccCceEeecCCCccEEEEEec---------------------------------ccee
Confidence 8888877765 4566666 7889999999999999999998 4556
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCC
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg 328 (1398)
+.++.||.+.|+..-|..+.++++|+|.|+.|++||+.+..+ .. +...|.+.||.+++.++.+++++.|+
T Consensus 142 l~rL~GHkd~iT~~~F~~~~~~lvS~sKDs~iK~WdL~tqhC-----f~-----Thvd~r~Eiw~l~~~~~~lvt~~~ds 211 (888)
T KOG0306|consen 142 LFRLRGHKDSITQALFLNGDSFLVSVSKDSMIKFWDLETQHC-----FE-----THVDHRGEIWALVLDEKLLVTAGTDS 211 (888)
T ss_pred eEEeecchHHHhHHhccCCCeEEEEeccCceEEEEeccccee-----ee-----EEecccceEEEEEEecceEEEEecCC
Confidence 788999999999999999899999999999999999999877 33 78899999999999999999999999
Q ss_pred cEEEEcC--C-C----------ceEEEEe-cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCC-C--------cccc
Q 000602 329 TCRVWGS--D-G----------KQLKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-L--------PGSL 385 (1398)
Q Consensus 329 ~i~vWd~--~-g----------~~l~~l~-~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~-~--------l~~l 385 (1398)
.+++|++ + . +...++. ...++ .-.++..+++++++.-+.|..+.++.+... . ++..
T Consensus 212 e~~v~~L~~~~D~~~~~~~~s~~~~G~~~rqsk~R-~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~ 290 (888)
T KOG0306|consen 212 ELKVWELAFEDDEKETNRYISTKLRGTFIRQSKGR-EINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRA 290 (888)
T ss_pred ceEEEEeecccccccccccceeeccceeeeccCCc-eeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHh
Confidence 9999998 1 1 1112222 22333 445667778889999999999999988431 0 0000
Q ss_pred cCCCc------cc-----------------------cc--cCC------------ccEEEeee--CCCc----cceeecc
Q 000602 386 ESHPE------AK-----------------------EF--NGR------------TEIFSIKI--PNFS----EQIRLTD 416 (1398)
Q Consensus 386 ~~~~~------~v-----------------------~~--~~~------------~~~~~~~~--~~~~----~~~~~~~ 416 (1398)
..+.. .+ .. ... .+.+++.. +..+ .......
T Consensus 291 Kkka~t~e~~~~v~~sl~~~i~r~~~ir~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~ 370 (888)
T KOG0306|consen 291 KKKAETEENEDDVEKSLSDEIKRLETIRTSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIG 370 (888)
T ss_pred hhhccccccccchhhhHHHHHHHHHheechhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeec
Confidence 00000 00 00 000 11111111 0000 0112345
Q ss_pred CCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCE
Q 000602 417 SKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNM 496 (1398)
Q Consensus 417 ~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I 496 (1398)
+|...|++++++.+..+++++..+.+. +|+..+.++ +.+...+ -+.+..+ .|.++++++|...|.+
T Consensus 371 GHR~dVRsl~vS~d~~~~~Sga~~Sik---iWn~~t~kc--iRTi~~~-y~l~~~F--------vpgd~~Iv~G~k~Gel 436 (888)
T KOG0306|consen 371 GHRSDVRSLCVSSDSILLASGAGESIK---IWNRDTLKC--IRTITCG-YILASKF--------VPGDRYIVLGTKNGEL 436 (888)
T ss_pred cchhheeEEEeecCceeeeecCCCcEE---EEEccCcce--eEEeccc-cEEEEEe--------cCCCceEEEeccCCce
Confidence 788999999999999888888888888 555555553 4444434 3333333 3778999999999999
Q ss_pred EEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeec
Q 000602 497 TIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFS 576 (1398)
Q Consensus 497 ~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~ 576 (1398)
.+||+.+....... ..+++.++. +..+||++.+++++.|.+|++|++..... .+...+..+.+.....
T Consensus 437 ~vfdlaS~~l~Eti-------~AHdgaIWs--i~~~pD~~g~vT~saDktVkfWdf~l~~~---~~gt~~k~lsl~~~rt 504 (888)
T KOG0306|consen 437 QVFDLASASLVETI-------RAHDGAIWS--ISLSPDNKGFVTGSADKTVKFWDFKLVVS---VPGTQKKVLSLKHTRT 504 (888)
T ss_pred EEEEeehhhhhhhh-------hccccceee--eeecCCCCceEEecCCcEEEEEeEEEEec---cCcccceeeeeccceE
Confidence 99999987765432 234555555 45789999999999999999999864322 1111112244444334
Q ss_pred cccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEE
Q 000602 577 SCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIR 656 (1398)
Q Consensus 577 ~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~ 656 (1398)
...+..|.|+.+||||++||+|--|.+++||-+.+-.+ .+ .+. .|. -+|.++.++ +|+..++
T Consensus 505 Lel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF---------fl----sLY-GHk-LPV~smDIS---~DSkliv 566 (888)
T KOG0306|consen 505 LELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF---------FL----SLY-GHK-LPVLSMDIS---PDSKLIV 566 (888)
T ss_pred EeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee---------ee----eec-ccc-cceeEEecc---CCcCeEE
Confidence 45577899999999999999999999999999887421 12 222 454 789999999 6789999
Q ss_pred EEcCCccEEEEEEecCCcceeee-eeeeeeeeeeeEeEecCCCccCcccceEEeeeccccEEEEeCccceEEEEeeccCc
Q 000602 657 STGGDGCICYLEYDKDRESLEFI-GMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGW 735 (1398)
Q Consensus 657 S~g~DG~i~iw~~~~~~~~~~~~-~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~ 735 (1398)
|+|.|..|++|-++.+.....+. |.+.+....|+ + ...++....
T Consensus 567 TgSADKnVKiWGLdFGDCHKS~fAHdDSvm~V~F~-----P------~~~~FFt~g------------------------ 611 (888)
T KOG0306|consen 567 TGSADKNVKIWGLDFGDCHKSFFAHDDSVMSVQFL-----P------KTHLFFTCG------------------------ 611 (888)
T ss_pred eccCCCceEEeccccchhhhhhhcccCceeEEEEc-----c------cceeEEEec------------------------
Confidence 99999999999999987654332 33333322222 0 122333333
Q ss_pred ccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCccccccccCCCcceeeEEEeecccccccccccccCCCCCeE
Q 000602 736 RRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSW 815 (1398)
Q Consensus 736 hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~ 815 (1398)
|++.|+.|+- ..|...++.-+|..||+|++.+|+ +.+
T Consensus 612 ---------------------KD~kvKqWDg-------~kFe~iq~L~~H~~ev~cLav~~~---------------G~~ 648 (888)
T KOG0306|consen 612 ---------------------KDGKVKQWDG-------EKFEEIQKLDGHHSEVWCLAVSPN---------------GSF 648 (888)
T ss_pred ---------------------CcceEEeech-------hhhhhheeeccchheeeeeEEcCC---------------CCe
Confidence 5555554431 234456667799999999999966 779
Q ss_pred EEEeecCCeEEEEEecC
Q 000602 816 IATGCEDGTVRLTRYSP 832 (1398)
Q Consensus 816 laTGseD~tIrl~~~~~ 832 (1398)
++|+|.|.+||+|....
T Consensus 649 vvs~shD~sIRlwE~td 665 (888)
T KOG0306|consen 649 VVSSSHDKSIRLWERTD 665 (888)
T ss_pred EEeccCCceeEeeeccC
Confidence 99999999999998643
|
|
| >KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-36 Score=339.55 Aligned_cols=562 Identities=16% Similarity=0.207 Sum_probs=407.7
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~v 161 (1398)
|.| ..++...++.|.+-+++. +.....+.+|...++-..|+| .|.++|+|...|.|||
T Consensus 28 pkg----d~ilY~nGksv~ir~i~~---------------~~~~~iYtEH~~~vtVAkySP---sG~yiASGD~sG~vRI 85 (603)
T KOG0318|consen 28 PKG----DNILYTNGKSVIIRNIDN---------------PASVDIYTEHAHQVTVAKYSP---SGFYIASGDVSGKVRI 85 (603)
T ss_pred CCC----CeEEEeCCCEEEEEECCC---------------ccceeeeccccceeEEEEeCC---CceEEeecCCcCcEEE
Confidence 666 577788889999999986 334556778999999999999 9999999999999999
Q ss_pred EEcCCCeEEEEEc-cCCcceEEEEEeecCCCCCcEEEEEEC----CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcce
Q 000602 162 WDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTI----YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1398)
Q Consensus 162 Wd~~~~~~~~~l~-~~~~~~~~s~~~~~~s~d~~~lasgs~----dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1398)
||......+.+-+ ......+..+.| +.++.+|++.+. .|.+.+||
T Consensus 86 Wdtt~~~hiLKnef~v~aG~I~Di~W---d~ds~RI~avGEGrerfg~~F~~D--------------------------- 135 (603)
T KOG0318|consen 86 WDTTQKEHILKNEFQVLAGPIKDISW---DFDSKRIAAVGEGRERFGHVFLWD--------------------------- 135 (603)
T ss_pred EeccCcceeeeeeeeeccccccccee---CCCCcEEEEEecCccceeEEEEec---------------------------
Confidence 9997744432211 111223444555 678888887653 45666676
Q ss_pred eeecccccceeEEEEEeCccCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEE
Q 000602 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1398)
Q Consensus 237 i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~-~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~ 315 (1398)
++..+..+.||...|++++|-|... +++|||+|++|.+|+-..-+. + ..+..|..-|.|+.
T Consensus 136 --------SG~SvGei~GhSr~ins~~~KpsRPfRi~T~sdDn~v~ffeGPPFKF---------k-~s~r~HskFV~~VR 197 (603)
T KOG0318|consen 136 --------SGNSVGEITGHSRRINSVDFKPSRPFRIATGSDDNTVAFFEGPPFKF---------K-SSFREHSKFVNCVR 197 (603)
T ss_pred --------CCCccceeeccceeEeeeeccCCCceEEEeccCCCeEEEeeCCCeee---------e-ecccccccceeeEE
Confidence 3455778899999999999999776 589999999999997544222 2 47778999999999
Q ss_pred Ec--CCEEEEEeCCCcEEEEcC-CCceEEEEe---cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCcccccCC
Q 000602 316 LT--DSFIITAGEDCTCRVWGS-DGKQLKMIK---EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESH 388 (1398)
Q Consensus 316 ~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~---~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~~~ 388 (1398)
|+ +.+++|++.||++.+||- +|+.+..+. +|.+ .|.+++|+||+..++|++.|.++||||+. ..+++++...
T Consensus 198 ysPDG~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkG-sIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~ 276 (603)
T KOG0318|consen 198 YSPDGSRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKG-SIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMG 276 (603)
T ss_pred ECCCCCeEEEecCCccEEEEcCCCccEEEEecCCCCccc-cEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecC
Confidence 99 589999999999999999 999999998 8999 79999999999999999999999999994 3444433221
Q ss_pred CccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEE
Q 000602 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (1398)
Q Consensus 389 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~ 468 (1398)
.. + ....+-|+. +.+.++...-.|.+..++..+... ..+..+| ...|.
T Consensus 277 ~~---------v-----------------~dqqvG~lW--qkd~lItVSl~G~in~ln~~d~~~---~~~i~GH-nK~IT 324 (603)
T KOG0318|consen 277 ST---------V-----------------EDQQVGCLW--QKDHLITVSLSGTINYLNPSDPSV---LKVISGH-NKSIT 324 (603)
T ss_pred Cc---------h-----------------hceEEEEEE--eCCeEEEEEcCcEEEEecccCCCh---hheeccc-cccee
Confidence 10 0 011233332 255777788889888766555442 3456666 67899
Q ss_pred EEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEE
Q 000602 469 CMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548 (1398)
Q Consensus 469 ~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~ 548 (1398)
++.+ .+++.+|++|+.||.|.-|+..++..-... ...+...+.++ .. .+...+++.+.|.+++
T Consensus 325 aLtv--------~~d~~~i~SgsyDG~I~~W~~~~g~~~~~~------g~~h~nqI~~~--~~-~~~~~~~t~g~Dd~l~ 387 (603)
T KOG0318|consen 325 ALTV--------SPDGKTIYSGSYDGHINSWDSGSGTSDRLA------GKGHTNQIKGM--AA-SESGELFTIGWDDTLR 387 (603)
T ss_pred EEEE--------cCCCCEEEeeccCceEEEEecCCccccccc------cccccceEEEE--ee-cCCCcEEEEecCCeEE
Confidence 9888 466799999999999999999887643210 11222233332 11 2335789999999999
Q ss_pred EEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeeccc
Q 000602 549 LWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPL 628 (1398)
Q Consensus 549 iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~ 628 (1398)
+.++......+.. . +..+++ -.+++..+++.++++...++-+.+=+.... ..++ .
T Consensus 388 ~~~~~~~~~t~~~------~------~~lg~Q--P~~lav~~d~~~avv~~~~~iv~l~~~~~~----------~~~~-~ 442 (603)
T KOG0318|consen 388 VISLKDNGYTKSE------V------VKLGSQ--PKGLAVLSDGGTAVVACISDIVLLQDQTKV----------SSIP-I 442 (603)
T ss_pred EEecccCcccccc------e------eecCCC--ceeEEEcCCCCEEEEEecCcEEEEecCCcc----------eeec-c
Confidence 9988654321110 0 111222 238888899888888888777666554431 1121 1
Q ss_pred ceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCcceeeeeeeeeeeeeeeEeEecCCCccCcccceEE
Q 000602 629 NYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYA 708 (1398)
Q Consensus 629 ~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v 708 (1398)
. -..+.++++ +++.+++.+|.||++.+|.+..+.+.-+.. ....++.+..+.++ +++.+++
T Consensus 443 ~--------y~~s~vAv~---~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~---~~~h~a~iT~vayS-----pd~~yla 503 (603)
T KOG0318|consen 443 G--------YESSAVAVS---PDGSEVAVGGQDGKVHVYSLSGDELKEEAK---LLEHRAAITDVAYS-----PDGAYLA 503 (603)
T ss_pred c--------cccceEEEc---CCCCEEEEecccceEEEEEecCCcccceee---eecccCCceEEEEC-----CCCcEEE
Confidence 1 346667777 667889999999999999999875432211 12225667777765 3467899
Q ss_pred eeeccccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCccccccccCCCcce
Q 000602 709 AGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGRE 788 (1398)
Q Consensus 709 ~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~Hgre 788 (1398)
+|-.++.+++|+..+.+.- ..+..+|...
T Consensus 504 ~~Da~rkvv~yd~~s~~~~---------------------------------------------------~~~w~FHtak 532 (603)
T KOG0318|consen 504 AGDASRKVVLYDVASREVK---------------------------------------------------TNRWAFHTAK 532 (603)
T ss_pred EeccCCcEEEEEcccCcee---------------------------------------------------cceeeeeeee
Confidence 9999999999998765420 1223489999
Q ss_pred eeEEEeecccccccccccccCCCCCeEEEEeecCCeEEEEEecCCCcccccccccccccCccceeeeeeeeeeccccccc
Q 000602 789 IHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVV 868 (1398)
Q Consensus 789 I~sv~~~~~~~~~~~~~~~~~~~~~~~laTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~f~~~~~~~~~~~ 868 (1398)
|.||+++|+ .+++||||-|++|-||.+..- .......++|. ..|+.+.++
T Consensus 533 I~~~aWsP~---------------n~~vATGSlDt~Viiysv~kP---~~~i~iknAH~--~gVn~v~wl---------- 582 (603)
T KOG0318|consen 533 INCVAWSPN---------------NKLVATGSLDTNVIIYSVKKP---AKHIIIKNAHL--GGVNSVAWL---------- 582 (603)
T ss_pred EEEEEeCCC---------------ceEEEeccccceEEEEEccCh---hhheEeccccc--cCceeEEEe----------
Confidence 999999976 679999999999999999753 23488999999 449999986
Q ss_pred cCCcccccccccccccCCCCEEEEEecccceEEEEEEE
Q 000602 869 DNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLR 906 (1398)
Q Consensus 869 ~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~ 906 (1398)
++--|+|.|.|..||+|++.
T Consensus 583 ------------------de~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 583 ------------------DESTVVSSGQDANIKVWNVT 602 (603)
T ss_pred ------------------cCceEEeccCcceeEEeccc
Confidence 34568999999999999864
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-35 Score=342.88 Aligned_cols=553 Identities=14% Similarity=0.178 Sum_probs=406.3
Q ss_pred CcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEec
Q 000602 4 KDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNF 75 (1398)
Q Consensus 4 ~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~ 75 (1398)
+.|.++|+.+.+ +.+.|++++.| |+ |.+|++.. .|...+-++.....++.|. ++. +|.+|.||
T Consensus 35 Nrvsv~dLknN~S~Tl~~e~~~NI~~ialS--p~----g~lllavdE~g~~~lvs~~~r~Vlh~f~-fk~-~v~~i~fS- 105 (893)
T KOG0291|consen 35 NRVSVFDLKNNKSYTLPLETRYNITRIALS--PD----GTLLLAVDERGRALLVSLLSRSVLHRFN-FKR-GVGAIKFS- 105 (893)
T ss_pred CEEEEEEccCCcceeEEeecCCceEEEEeC--CC----ceEEEEEcCCCcEEEEecccceeeEEEe-ecC-ccceEEEC-
Confidence 468899998865 56789999999 99 88888877 5888888988888888887 454 69999999
Q ss_pred cccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC
Q 000602 76 INCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1398)
Q Consensus 76 ~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~ 155 (1398)
|+| .++|++-++.+.||...... ..+|.| +.+.+++.+|-+.|.++.|+. |.++|++|+.
T Consensus 106 ------Png----~~fav~~gn~lqiw~~P~~~--~~~~~p-----Fvl~r~~~g~fddi~si~Ws~---DSr~l~~gsr 165 (893)
T KOG0291|consen 106 ------PNG----KFFAVGCGNLLQIWHAPGEI--KNEFNP-----FVLHRTYLGHFDDITSIDWSD---DSRLLVTGSR 165 (893)
T ss_pred ------CCC----cEEEEEecceeEEEecCcch--hcccCc-----ceEeeeecCCccceeEEEecc---CCceEEeccc
Confidence 999 79999999999999986432 225665 888899999999999999999 9999999999
Q ss_pred CCeEEEEEcCCCeE--EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCC-CCCCCCCCCCCC
Q 000602 156 DNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSS 232 (1398)
Q Consensus 156 Dg~V~vWd~~~~~~--~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~-~~~~~s~~~~~~ 232 (1398)
|-++++|+++..+. ...+.+|...++-+. | ..+...+++-+.||.+.+|.+.......... .....+.+....
T Consensus 166 D~s~rl~~v~~~k~~~~~~l~gHkd~Vvacf-F---~~~~~~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~ 241 (893)
T KOG0291|consen 166 DLSARLFGVDGNKNLFTYALNGHKDYVVACF-F---GANSLDLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMD 241 (893)
T ss_pred cceEEEEEeccccccceEeccCCCcceEEEE-e---ccCcceEEEEecCceEEEEEecCCCccccccccccccccccccc
Confidence 99999999986555 445556665544332 3 5677789999999999999987321110000 000001111111
Q ss_pred Ccc--eee--ecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC
Q 000602 233 DFK--CFK--LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1398)
Q Consensus 233 ~~~--~i~--i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~ 308 (1398)
.++ .++ .|. .....-+......|++.+|++.-..|+++-..|...+|++..-.. +. .+.--.
T Consensus 242 ~~~Eek~~~~~~~----k~~k~~ln~~~~kvtaa~fH~~t~~lvvgFssG~f~LyelP~f~l-----ih-----~LSis~ 307 (893)
T KOG0291|consen 242 EDGEEKTHKIFWY----KTKKHYLNQNSSKVTAAAFHKGTNLLVVGFSSGEFGLYELPDFNL-----IH-----SLSISD 307 (893)
T ss_pred ccchhhhcceEEE----EEEeeeecccccceeeeeccCCceEEEEEecCCeeEEEecCCceE-----EE-----Eeeccc
Confidence 110 111 111 111222334447899999999999999999999999999988655 33 444445
Q ss_pred ccEEEEEEc--CCEEEEEeCC-CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCcc
Q 000602 309 ARVWDCCLT--DSFIITAGED-CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPG 383 (1398)
Q Consensus 309 ~~V~~l~~s--~~~l~sgs~D-g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~ 383 (1398)
.+|..++|+ |..|+.|+.. |.+.||+. ...-+-+.++|.. .+.+++++|||+++|||+.||+|+|||.. +-|+.
T Consensus 308 ~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~-~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~v 386 (893)
T KOG0291|consen 308 QKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSD-RITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFV 386 (893)
T ss_pred ceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeecccccc-ceeeEEECCCCcEEEeccCCCcEEEEeccCceEEE
Confidence 788999998 8999988766 89999999 6667778889988 59999999999999999999999999994 34443
Q ss_pred cccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE-EcCCcEEEEEeecCCCceeEEEEeec
Q 000602 384 SLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVS 462 (1398)
Q Consensus 384 ~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~-t~~g~i~~~~l~~~~~~~w~~i~~~~ 462 (1398)
+| ..|+..|+.+.|+..|+.+++ +-+|.+..|++..... -+.++.+
T Consensus 387 TF------------------------------teHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRYrN---fRTft~P 433 (893)
T KOG0291|consen 387 TF------------------------------TEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRYRN---FRTFTSP 433 (893)
T ss_pred Ee------------------------------ccCCCceEEEEEEecCCEEEEeecCCeEEeeeecccce---eeeecCC
Confidence 33 356678999999999976665 5689888766655443 3345566
Q ss_pred CCccEEEEeccCCCCCCcCCCCcEEEEEeCCC-CEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEE
Q 000602 463 EGMPIICMDLLSNEPKYPCGIDDWVALGDGKG-NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTA 541 (1398)
Q Consensus 463 ~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG-~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~ 541 (1398)
......|+++.+ .+.++..|+.|. .|.+|++.+|+.+.. ..++++.+.+ ++|+|++..|+++
T Consensus 434 ~p~QfscvavD~--------sGelV~AG~~d~F~IfvWS~qTGqllDi-------LsGHEgPVs~--l~f~~~~~~LaS~ 496 (893)
T KOG0291|consen 434 EPIQFSCVAVDP--------SGELVCAGAQDSFEIFVWSVQTGQLLDI-------LSGHEGPVSG--LSFSPDGSLLASG 496 (893)
T ss_pred CceeeeEEEEcC--------CCCEEEeeccceEEEEEEEeecCeeeeh-------hcCCCCccee--eEEccccCeEEec
Confidence 666777887743 467888888887 899999999986642 2344555544 5799999999999
Q ss_pred cCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccc
Q 000602 542 DPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVAL 621 (1398)
Q Consensus 542 s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~ 621 (1398)
+.|.+||+|++-.... .. . ...+...++.++|+|||+-||++..||.|.+||...+..... ...
T Consensus 497 SWDkTVRiW~if~s~~----------~v---E--tl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~-Idg 560 (893)
T KOG0291|consen 497 SWDKTVRIWDIFSSSG----------TV---E--TLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGS-IDG 560 (893)
T ss_pred cccceEEEEEeeccCc----------ee---e--eEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeecc-ccc
Confidence 9999999999864311 11 1 223456699999999999999999999999999987532210 000
Q ss_pred eeeecccc----ee--cc-ccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCc
Q 000602 622 HVEVSPLN----YF--KG-AHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1398)
Q Consensus 622 ~~~l~p~~----~~--~g-~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~ 674 (1398)
...+.++. .+ +. +.+ .+.|+|+++ .|+..|+++|....||+|+++.+..
T Consensus 561 rkD~~~gR~~~D~~ta~~sa~~-K~Ftti~yS---aDG~~IlAgG~sn~iCiY~v~~~vl 616 (893)
T KOG0291|consen 561 RKDLSGGRKETDRITAENSAKG-KTFTTICYS---ADGKCILAGGESNSICIYDVPEGVL 616 (893)
T ss_pred hhhccccccccceeehhhcccC-CceEEEEEc---CCCCEEEecCCcccEEEEECchhhe
Confidence 11111111 11 11 222 678999888 6789999999999999999987644
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-38 Score=340.69 Aligned_cols=319 Identities=19% Similarity=0.283 Sum_probs=275.4
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|.|++|+ |+ ++.|++|+ |.++|+||+.+..++++.++|.. -|.+|+|+ ||| ..||++
T Consensus 114 H~e~Vl~~~fs--p~----g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~-WVlcvaws-------PDg----k~iASG 175 (480)
T KOG0271|consen 114 HGEAVLSVQFS--PT----GSRLVTGSGDTTVRLWDLDTETPLFTCKGHKN-WVLCVAWS-------PDG----KKIASG 175 (480)
T ss_pred CCCcEEEEEec--CC----CceEEecCCCceEEeeccCCCCcceeecCCcc-EEEEEEEC-------CCc----chhhcc
Confidence 89999999999 99 99999999 79999999999999999999876 89999999 998 677776
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEee--cCCCcEEEEEECCCeEEEEEcCCCeEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV--CNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~--~~dg~~Latgs~Dg~V~vWd~~~~~~~~ 171 (1398)
. +|+|++||..++. ...+.|++|..||++++|.|. .+..++||+++.||+|+|||+..+.++.
T Consensus 176 ~~dg~I~lwdpktg~--------------~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~ 241 (480)
T KOG0271|consen 176 SKDGSIRLWDPKTGQ--------------QIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVR 241 (480)
T ss_pred ccCCeEEEecCCCCC--------------cccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEE
Confidence 6 9999999988743 455688999999999999874 2466799999999999999999999999
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
.+.+|.. .+.++++ ....+|++|+.|++|++|+.. .+.....
T Consensus 242 ~lsgHT~-~VTCvrw----GG~gliySgS~DrtIkvw~a~---------------------------------dG~~~r~ 283 (480)
T KOG0271|consen 242 TLSGHTA-SVTCVRW----GGEGLIYSGSQDRTIKVWRAL---------------------------------DGKLCRE 283 (480)
T ss_pred EeccCcc-ceEEEEE----cCCceEEecCCCceEEEEEcc---------------------------------chhHHHh
Confidence 8887765 4677876 234599999999999999988 6778888
Q ss_pred EeCccCCEEEEEEc-----------CCCC-------------------------EEEEEECCCeEEEEEcCCCcccCCCC
Q 000602 252 LVGHEGSIFRIEWS-----------SCGS-------------------------KLVSVSDDRSARIWEVRAEYWKDSDS 295 (1398)
Q Consensus 252 l~gH~~~I~~vafs-----------pdg~-------------------------~LaS~s~Dg~V~iWd~~~~~~~~~~~ 295 (1398)
++||..+|+.++.+ |.++ .|+|||+|.++.+|+....+..
T Consensus 284 lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkp---- 359 (480)
T KOG0271|consen 284 LKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKP---- 359 (480)
T ss_pred hcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccc----
Confidence 99999999999876 2233 5999999999999998765431
Q ss_pred ceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcE
Q 000602 296 IEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1398)
Q Consensus 296 ~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I 372 (1398)
+ ....||...|..+.|+| .+|++|+.|..|++|+. +|+.+.+|++|-+ +|+.++|+.|.++|++|+.|.++
T Consensus 360 i-----~rmtgHq~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv~-~VYqvawsaDsRLlVS~SkDsTL 433 (480)
T KOG0271|consen 360 I-----TRMTGHQALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHVA-AVYQVAWSADSRLLVSGSKDSTL 433 (480)
T ss_pred h-----hhhhchhhheeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhccc-eeEEEEeccCccEEEEcCCCceE
Confidence 2 27789999999999994 89999999999999999 9999999999999 79999999999999999999999
Q ss_pred EEEEcCCCC-cccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEE
Q 000602 373 KVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYH 444 (1398)
Q Consensus 373 ~iwdl~~~~-l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~ 444 (1398)
++|+++.+. ... +.+|...|.++.|+|||..++++..++++.
T Consensus 434 Kvw~V~tkKl~~D------------------------------LpGh~DEVf~vDwspDG~rV~sggkdkv~~ 476 (480)
T KOG0271|consen 434 KVWDVRTKKLKQD------------------------------LPGHADEVFAVDWSPDGQRVASGGKDKVLR 476 (480)
T ss_pred EEEEeeeeeeccc------------------------------CCCCCceEEEEEecCCCceeecCCCceEEE
Confidence 999995432 222 234667799999999999999987777653
|
|
| >KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-37 Score=335.41 Aligned_cols=329 Identities=17% Similarity=0.263 Sum_probs=274.5
Q ss_pred eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCC
Q 000602 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1398)
Q Consensus 55 ~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1398)
++-..+.+|.+ +|.+++|+ |+| ..|++ +||.++|+||+.+ ..+..+.++|..
T Consensus 106 rCssS~~GH~e-~Vl~~~fs-------p~g----~~l~tGsGD~TvR~WD~~T---------------eTp~~t~KgH~~ 158 (480)
T KOG0271|consen 106 RCSSSIAGHGE-AVLSVQFS-------PTG----SRLVTGSGDTTVRLWDLDT---------------ETPLFTCKGHKN 158 (480)
T ss_pred eeccccCCCCC-cEEEEEec-------CCC----ceEEecCCCceEEeeccCC---------------CCcceeecCCcc
Confidence 34456677666 89999999 988 45555 5699999999997 356778899999
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeec--CCCCCcEEEEEECCCeEEEEEcc
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG--DNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~--~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
||.|++|+| ||+.||+|+.||+|++||..+|+.+..-...++..+.+++|.+ ..|...+||+++.||.|+|||..
T Consensus 159 WVlcvawsP---Dgk~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~ 235 (480)
T KOG0271|consen 159 WVLCVAWSP---DGKKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTK 235 (480)
T ss_pred EEEEEEECC---CcchhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEcc
Confidence 999999999 9999999999999999999999887665555566788888865 35677899999999999999998
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc
Q 000602 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1398)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~ 291 (1398)
.+..+..+.||+.+|+||.|--+ .+++|+|.|++|++|+...+.+
T Consensus 236 ---------------------------------~~~~~~~lsgHT~~VTCvrwGG~-gliySgS~DrtIkvw~a~dG~~- 280 (480)
T KOG0271|consen 236 ---------------------------------LGTCVRTLSGHTASVTCVRWGGE-GLIYSGSQDRTIKVWRALDGKL- 280 (480)
T ss_pred ---------------------------------CceEEEEeccCccceEEEEEcCC-ceEEecCCCceEEEEEccchhH-
Confidence 67889999999999999999654 5899999999999999999877
Q ss_pred CCCCceEeeeeEEecCCccEEEEEEc-------------CC-------------------------EEEEEeCCCcEEEE
Q 000602 292 DSDSIEEVGSSVLYGHNARVWDCCLT-------------DS-------------------------FIITAGEDCTCRVW 333 (1398)
Q Consensus 292 ~~~~~~~i~~~~~~gh~~~V~~l~~s-------------~~-------------------------~l~sgs~Dg~i~vW 333 (1398)
.+ .+.||..+|..++.+ +. .+++|+.|.++.+|
T Consensus 281 ----~r-----~lkGHahwvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW 351 (480)
T KOG0271|consen 281 ----CR-----ELKGHAHWVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLW 351 (480)
T ss_pred ----HH-----hhcccchheeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEe
Confidence 33 888999999998876 22 49999999999999
Q ss_pred cC--CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeeCCCcc
Q 000602 334 GS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE 410 (1398)
Q Consensus 334 d~--~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl-~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~ 410 (1398)
+. ..+++..+.+|.. -|..+.|+||+++||+++.|..|++|+. .|+.+.+|.+|.
T Consensus 352 ~p~~~kkpi~rmtgHq~-lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~lasfRGHv--------------------- 409 (480)
T KOG0271|consen 352 NPFKSKKPITRMTGHQA-LVNHVSFSPDGRYIASASFDKSVKLWDGRTGKFLASFRGHV--------------------- 409 (480)
T ss_pred cccccccchhhhhchhh-heeeEEECCCccEEEEeecccceeeeeCCCcchhhhhhhcc---------------------
Confidence 98 6678999999999 5999999999999999999999999998 566666666554
Q ss_pred ceeeccCCCCcEEEEEEecCCeEEEEEcCC-cEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEE
Q 000602 411 QIRLTDSKSEYVRCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVAL 489 (1398)
Q Consensus 411 ~~~~~~~~~~~V~~lafs~dg~llv~t~~g-~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~ 489 (1398)
..|..++|+.|.+++++++.+ .+. +|+..+.+...=+.+ +..+++++|. +|++..+++
T Consensus 410 ---------~~VYqvawsaDsRLlVS~SkDsTLK---vw~V~tkKl~~DLpG-h~DEVf~vDw--------spDG~rV~s 468 (480)
T KOG0271|consen 410 ---------AAVYQVAWSADSRLLVSGSKDSTLK---VWDVRTKKLKQDLPG-HADEVFAVDW--------SPDGQRVAS 468 (480)
T ss_pred ---------ceeEEEEeccCccEEEEcCCCceEE---EEEeeeeeecccCCC-CCceEEEEEe--------cCCCceeec
Confidence 578999999999999987654 444 455444332222333 4778999988 578899999
Q ss_pred EeCCCCEEEEE
Q 000602 490 GDGKGNMTIVR 500 (1398)
Q Consensus 490 gs~dG~I~Iwd 500 (1398)
|..|..+++|.
T Consensus 469 ggkdkv~~lw~ 479 (480)
T KOG0271|consen 469 GGKDKVLRLWR 479 (480)
T ss_pred CCCceEEEeec
Confidence 99999999984
|
|
| >KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-33 Score=323.04 Aligned_cols=468 Identities=13% Similarity=0.199 Sum_probs=358.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC--------eEEEEEEeeeCccEEEEEEeccccccCCCCccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG--------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg--------~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~ 87 (1398)
...+|.|++|| |+ |+++|+|.++.+.||..... .+.+++.+|-. .|.+|.|+ .|.
T Consensus 95 fk~~v~~i~fS--Pn----g~~fav~~gn~lqiw~~P~~~~~~~~pFvl~r~~~g~fd-di~si~Ws-------~DS--- 157 (893)
T KOG0291|consen 95 FKRGVGAIKFS--PN----GKFFAVGCGNLLQIWHAPGEIKNEFNPFVLHRTYLGHFD-DITSIDWS-------DDS--- 157 (893)
T ss_pred ecCccceEEEC--CC----CcEEEEEecceeEEEecCcchhcccCcceEeeeecCCcc-ceeEEEec-------cCC---
Confidence 45789999999 99 99999999999999987542 23345555544 69999999 776
Q ss_pred eeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC
Q 000602 88 TFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 88 ~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
+++++++ |.+++||.++... .-....+.+|.+.|-..-|.. +...+.|-+.||.+.+|....
T Consensus 158 -r~l~~gsrD~s~rl~~v~~~k-------------~~~~~~l~gHkd~VvacfF~~---~~~~l~tvskdG~l~~W~~~~ 220 (893)
T KOG0291|consen 158 -RLLVTGSRDLSARLFGVDGNK-------------NLFTYALNGHKDYVVACFFGA---NSLDLYTVSKDGALFVWTCDL 220 (893)
T ss_pred -ceEEeccccceEEEEEecccc-------------ccceEeccCCCcceEEEEecc---CcceEEEEecCceEEEEEecC
Confidence 6777755 9999999998633 233567889999999999998 888899999999999998761
Q ss_pred C-----------------------eE-----E-EEE----ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 167 S-----------------------SI-----I-LEV----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 167 ~-----------------------~~-----~-~~l----~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
. +. . ... -.....-+.+.+| .+....||+|-..|...++.+.
T Consensus 221 ~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~f---H~~t~~lvvgFssG~f~LyelP-- 295 (893)
T KOG0291|consen 221 RPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAF---HKGTNLLVVGFSSGEFGLYELP-- 295 (893)
T ss_pred CCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeec---cCCceEEEEEecCCeeEEEecC--
Confidence 1 00 0 000 0111133445555 4566789999999999999988
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCcccC
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKD 292 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~V~iWd~~~~~~~~ 292 (1398)
....++.+.--..+|..++|+..|.+||.|+. -|.+-+|+......
T Consensus 296 -------------------------------~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsY-- 342 (893)
T KOG0291|consen 296 -------------------------------DFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESY-- 342 (893)
T ss_pred -------------------------------CceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccce--
Confidence 67788888888899999999999999998765 48999999988655
Q ss_pred CCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
+ ....+|..++.+++++ +++++||++||.|+|||. .|-+..+|..|.. +|+.+.|+..|+.+++.+-|
T Consensus 343 ---V-----lKQQgH~~~i~~l~YSpDgq~iaTG~eDgKVKvWn~~SgfC~vTFteHts-~Vt~v~f~~~g~~llssSLD 413 (893)
T KOG0291|consen 343 ---V-----LKQQGHSDRITSLAYSPDGQLIATGAEDGKVKVWNTQSGFCFVTFTEHTS-GVTAVQFTARGNVLLSSSLD 413 (893)
T ss_pred ---e-----eeccccccceeeEEECCCCcEEEeccCCCcEEEEeccCceEEEEeccCCC-ceEEEEEEecCCEEEEeecC
Confidence 2 3678999999999999 469999999999999999 8999999999999 79999999999999999999
Q ss_pred CcEEEEEcC-CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEee
Q 000602 370 SAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLC 448 (1398)
Q Consensus 370 g~I~iwdl~-~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~ 448 (1398)
|+||.||+. ..+.+++.... .-...|++..|.|.+++++.... +.+.+|
T Consensus 414 GtVRAwDlkRYrNfRTft~P~-----------------------------p~QfscvavD~sGelV~AG~~d~-F~IfvW 463 (893)
T KOG0291|consen 414 GTVRAWDLKRYRNFRTFTSPE-----------------------------PIQFSCVAVDPSGELVCAGAQDS-FEIFVW 463 (893)
T ss_pred CeEEeeeecccceeeeecCCC-----------------------------ceeeeEEEEcCCCCEEEeeccce-EEEEEE
Confidence 999999994 45555443322 12367888889898888776554 345588
Q ss_pred cCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEE
Q 000602 449 DMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTY 528 (1398)
Q Consensus 449 ~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 528 (1398)
+.++++...++.+| ..|+.++.+ .+.+..|++|+-|.+|++|++-...... -++. ..+..+.
T Consensus 464 S~qTGqllDiLsGH-EgPVs~l~f--------~~~~~~LaS~SWDkTVRiW~if~s~~~v-----Etl~--i~sdvl~-- 525 (893)
T KOG0291|consen 464 SVQTGQLLDILSGH-EGPVSGLSF--------SPDGSLLASGSWDKTVRIWDIFSSSGTV-----ETLE--IRSDVLA-- 525 (893)
T ss_pred EeecCeeeehhcCC-CCcceeeEE--------ccccCeEEeccccceEEEEEeeccCcee-----eeEe--eccceeE--
Confidence 88888877888888 678888777 3557899999999999999996532111 1111 1122333
Q ss_pred EEecCCCcEEEEEcCCCcEEEEecCCCCCccccccC-----ccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCe
Q 000602 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS-----KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN 603 (1398)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~-----~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGt 603 (1398)
+.|+|+|+-|+++.-||.|.+||+....+....+.. .+..............+..+.+++|+||..|+.|.....
T Consensus 526 vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR~~~D~~ta~~sa~~K~Ftti~ySaDG~~IlAgG~sn~ 605 (893)
T KOG0291|consen 526 VSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGRKETDRITAENSAKGKTFTTICYSADGKCILAGGESNS 605 (893)
T ss_pred EEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccccccceeehhhcccCCceEEEEEcCCCCEEEecCCccc
Confidence 578999999999999999999999876543222100 000001111111244578999999999999999999999
Q ss_pred EEEEECCCc
Q 000602 604 LVLFPLLRD 612 (1398)
Q Consensus 604 I~Iwd~~~~ 612 (1398)
|+||++.++
T Consensus 606 iCiY~v~~~ 614 (893)
T KOG0291|consen 606 ICIYDVPEG 614 (893)
T ss_pred EEEEECchh
Confidence 999999876
|
|
| >KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-34 Score=327.72 Aligned_cols=539 Identities=14% Similarity=0.210 Sum_probs=381.4
Q ss_pred cEEEEeCCcCe---------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEe
Q 000602 5 DLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 5 tv~iWdl~~~~---------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs 74 (1398)
.|.+||+++++ -..+|+|++-+ |+ ..+||+|+ ||.|+||+..++..+-++.+|.. .|+.+.|.
T Consensus 44 ~vn~WdlRtge~~~~l~~~~~k~evt~l~~~--~d----~l~lAVGYaDGsVqif~~~s~~~~~tfngHK~-AVt~l~fd 116 (888)
T KOG0306|consen 44 QVNIWDLRTGEIEKKLILLKKKAEVTCLRSS--DD----ILLLAVGYADGSVQIFSLESEEILITFNGHKA-AVTTLKFD 116 (888)
T ss_pred cEeEEeeecchhhhhhhhhcccceEEEeecc--CC----cceEEEEecCceEEeeccCCCceeeeeccccc-ceEEEEEc
Confidence 47899999993 23489999999 88 77889999 89999999999999999999887 79999999
Q ss_pred ccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE
Q 000602 75 FINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg 153 (1398)
..| ..|++++ |+.|.+||+-.+ .-...++||++.|+..-|.. +...|++.
T Consensus 117 -------~~G----~rlaSGskDt~IIvwDlV~E---------------~Gl~rL~GHkd~iT~~~F~~---~~~~lvS~ 167 (888)
T KOG0306|consen 117 -------KIG----TRLASGSKDTDIIVWDLVGE---------------EGLFRLRGHKDSITQALFLN---GDSFLVSV 167 (888)
T ss_pred -------ccC----ceEeecCCCccEEEEEeccc---------------eeeEEeecchHHHhHHhccC---CCeEEEEe
Confidence 777 6777777 999999999752 23557889999999999997 78899999
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCC---
Q 000602 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS--- 230 (1398)
Q Consensus 154 s~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~--- 230 (1398)
+.|+.|++||+++..+..+.-.+ +..+|.+.+. +..+++++.|+.+++|++..+...........+...+.
T Consensus 168 sKDs~iK~WdL~tqhCf~Thvd~-r~Eiw~l~~~-----~~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~~~r 241 (888)
T KOG0306|consen 168 SKDSMIKFWDLETQHCFETHVDH-RGEIWALVLD-----EKLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGTFIR 241 (888)
T ss_pred ccCceEEEEecccceeeeEEecc-cceEEEEEEe-----cceEEEEecCCceEEEEeecccccccccccceeeccceeee
Confidence 99999999999999888776544 4568888772 37899999999999999963322211111111111111
Q ss_pred CCCcceeeecccccceeEEEEEeCc-------------------------------------------------------
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGH------------------------------------------------------- 255 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH------------------------------------------------------- 255 (1398)
++.++.+++-... +.. +..+.|+
T Consensus 242 qsk~R~i~l~~d~-s~r-~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir~ 319 (888)
T KOG0306|consen 242 QSKGREINLVTDF-SDR-FLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIRT 319 (888)
T ss_pred ccCCceeEEeecC-ccc-EEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHheec
Confidence 1122333322111 011 1111111
Q ss_pred cCCEEEEEEcCCCC---EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC-CEEEEEeCCCcEE
Q 000602 256 EGSIFRIEWSSCGS---KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCR 331 (1398)
Q Consensus 256 ~~~I~~vafspdg~---~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~-~~l~sgs~Dg~i~ 331 (1398)
...|.++.+.|.++ .|++ -.+.++.+|.+.......+. ...+....+.||...|.+++++. +.++..+..+.++
T Consensus 320 ~~kiks~dv~~~~~~~~~lv~-l~nNtv~~ysl~~s~~~~p~-~~~~~~i~~~GHR~dVRsl~vS~d~~~~~Sga~~Sik 397 (888)
T KOG0306|consen 320 SAKIKSFDVTPSGGTENTLVL-LANNTVEWYSLENSGKTSPE-ADRTSNIEIGGHRSDVRSLCVSSDSILLASGAGESIK 397 (888)
T ss_pred hhheeEEEEEecCCcceeEEE-eecCceEEEEeccCCCCCcc-ccccceeeeccchhheeEEEeecCceeeeecCCCcEE
Confidence 11234455555432 2333 44556777766652110011 11112247789999999999994 5555555678999
Q ss_pred EEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCc
Q 000602 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFS 409 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~ 409 (1398)
+|+. +.+++.++... -+.+..|-|.++++++|...|.+.+||+.. ..+.++
T Consensus 398 iWn~~t~kciRTi~~~---y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti------------------------ 450 (888)
T KOG0306|consen 398 IWNRDTLKCIRTITCG---YILASKFVPGDRYIVLGTKNGELQVFDLASASLVETI------------------------ 450 (888)
T ss_pred EEEccCcceeEEeccc---cEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhh------------------------
Confidence 9999 79999998654 378889999999999999999999999943 333332
Q ss_pred cceeeccCCCCcEEEEEEecCCeEEEEE-cCCcEEEEEeecCCC--ceeEEEEe------ecCCccEEEEeccCCCCCCc
Q 000602 410 EQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCDMDS--VNWNKILQ------VSEGMPIICMDLLSNEPKYP 480 (1398)
Q Consensus 410 ~~~~~~~~~~~~V~~lafs~dg~llv~t-~~g~i~~~~l~~~~~--~~w~~i~~------~~~~~~i~~l~~~~~~~~~s 480 (1398)
..|.+.|..++.+||+.-++++ .+..+..|.+.-... +.-++++. ..-...+.|+.+
T Consensus 451 ------~AHdgaIWsi~~~pD~~g~vT~saDktVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~-------- 516 (888)
T KOG0306|consen 451 ------RAHDGAIWSISLSPDNKGFVTGSADKTVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSV-------- 516 (888)
T ss_pred ------hccccceeeeeecCCCCceEEecCCcEEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEE--------
Confidence 3466788899999998766555 455566554321111 11111111 222456777776
Q ss_pred CCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccc
Q 000602 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (1398)
Q Consensus 481 ~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~ 560 (1398)
+|+++++|++--|.+++||-+++-+.. +.+. .|.+....+..|||++.++||+.|..|++|-++-+.
T Consensus 517 Spdgk~LaVsLLdnTVkVyflDtlKFf------lsLY---GHkLPV~smDIS~DSklivTgSADKnVKiWGLdFGD---- 583 (888)
T KOG0306|consen 517 SPDGKLLAVSLLDNTVKVYFLDTLKFF------LSLY---GHKLPVLSMDISPDSKLIVTGSADKNVKIWGLDFGD---- 583 (888)
T ss_pred cCCCcEEEEEeccCeEEEEEecceeee------eeec---ccccceeEEeccCCcCeEEeccCCCceEEeccccch----
Confidence 588999999999999999999874322 3333 233444456789999999999999999999887552
Q ss_pred cccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccE
Q 000602 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTV 640 (1398)
Q Consensus 561 ~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~V 640 (1398)
|-+.| .+|+..|+++.|-|+..++.++++|+.|+-||-.+ +.....+.++|+ .|
T Consensus 584 ----------CHKS~-fAHdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~k-------------Fe~iq~L~~H~~--ev 637 (888)
T KOG0306|consen 584 ----------CHKSF-FAHDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEK-------------FEEIQKLDGHHS--EV 637 (888)
T ss_pred ----------hhhhh-hcccCceeEEEEcccceeEEEecCcceEEeechhh-------------hhhheeeccchh--ee
Confidence 23332 37999999999999999999999999999999664 344555566664 78
Q ss_pred EEEEEEeeCCCceEEEEEcCCccEEEEEEecC
Q 000602 641 STLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1398)
Q Consensus 641 tsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~ 672 (1398)
-+++.. +++.+++|+|+|..||+|.-...
T Consensus 638 ~cLav~---~~G~~vvs~shD~sIRlwE~tde 666 (888)
T KOG0306|consen 638 WCLAVS---PNGSFVVSSSHDKSIRLWERTDE 666 (888)
T ss_pred eeeEEc---CCCCeEEeccCCceeEeeeccCc
Confidence 888777 67899999999999999996653
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-36 Score=326.61 Aligned_cols=278 Identities=22% Similarity=0.348 Sum_probs=254.0
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
.+||..+.|| +| +..||+|+ +|.++||+..+...+.+|.+|.. +|.++.|+ |... +..+|+++
T Consensus 175 ~rPis~~~fS--~d----s~~laT~swsG~~kvW~~~~~~~~~~l~gH~~-~v~~~~fh-------P~~~--~~~lat~s 238 (459)
T KOG0272|consen 175 TRPISGCSFS--RD----SKHLATGSWSGLVKVWSVPQCNLLQTLRGHTS-RVGAAVFH-------PVDS--DLNLATAS 238 (459)
T ss_pred CCcceeeEee--cC----CCeEEEeecCCceeEeecCCcceeEEEecccc-ceeeEEEc-------cCCC--ccceeeec
Confidence 5789999999 98 89999999 99999999999999999999887 79999999 6510 24666665
Q ss_pred -CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 96 -d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
||++++|+++. -.++..+.+|...|..++|+| +|++|+|++.|.+-++||+.++..+...+
T Consensus 239 ~Dgtvklw~~~~---------------e~~l~~l~gH~~RVs~VafHP---sG~~L~TasfD~tWRlWD~~tk~ElL~QE 300 (459)
T KOG0272|consen 239 ADGTVKLWKLSQ---------------ETPLQDLEGHLARVSRVAFHP---SGKFLGTASFDSTWRLWDLETKSELLLQE 300 (459)
T ss_pred cCCceeeeccCC---------------CcchhhhhcchhhheeeeecC---CCceeeecccccchhhcccccchhhHhhc
Confidence 99999999986 356788999999999999999 99999999999999999999998877777
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1398)
+|.. .+++++| .+||.++++|+.|..-+|||++ ++..+..+.|
T Consensus 301 GHs~-~v~~iaf---~~DGSL~~tGGlD~~~RvWDlR---------------------------------tgr~im~L~g 343 (459)
T KOG0272|consen 301 GHSK-GVFSIAF---QPDGSLAATGGLDSLGRVWDLR---------------------------------TGRCIMFLAG 343 (459)
T ss_pred cccc-ccceeEe---cCCCceeeccCccchhheeecc---------------------------------cCcEEEEecc
Confidence 7665 4788887 6899999999999999999999 7889999999
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCR 331 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~ 331 (1398)
|...|.+|+|+|+|..|||||.|++++|||++..+. + ..+.+|..-|..+.|. +.+|+|++.|++++
T Consensus 344 H~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~-----l-----y~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~k 413 (459)
T KOG0272|consen 344 HIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSE-----L-----YTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVK 413 (459)
T ss_pred cccceeeEeECCCceEEeecCCCCcEEEeeeccccc-----c-----eecccccchhhheEecccCCeEEEEcccCccee
Confidence 999999999999999999999999999999998765 2 4888999999999998 58999999999999
Q ss_pred EEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
||.. +..+++.+.+|.++ |.++++++++.+++|++.|.++++|.
T Consensus 414 iWs~~~~~~~ksLaGHe~k-V~s~Dis~d~~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 414 IWSTRTWSPLKSLAGHEGK-VISLDISPDSQAIATSSFDRTIKLWR 458 (459)
T ss_pred eecCCCcccchhhcCCccc-eEEEEeccCCceEEEeccCceeeecc
Confidence 9999 88999999999995 99999999999999999999999995
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-32 Score=313.24 Aligned_cols=670 Identities=14% Similarity=0.162 Sum_probs=413.5
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCC
Q 000602 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 35 g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~ 114 (1398)
+.++|.|.+..|.+||..+...+..+.+|.. +|.++.+- |+......++....|+.|.+|.++.+.
T Consensus 25 ~~~vafGa~~~Iav~dp~k~~i~t~l~GH~a-~VnC~~~l-------~~s~~~a~~vsG~sD~~v~lW~l~~~~------ 90 (764)
T KOG1063|consen 25 GGLVAFGAGPAIAVADPEKILIVTTLDGHVA-RVNCVHWL-------PTSEIVAEMVSGDSDGRVILWKLRDEY------ 90 (764)
T ss_pred cceEEecCCceEEEeCcccceeEEeccCCcc-ceEEEEEc-------ccccccceEEEccCCCcEEEEEEeehh------
Confidence 4788889999999999998877788888877 89999998 554211223333449999999998433
Q ss_pred CCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE--EEEEccCC-cceEEEEEeecCCC
Q 000602 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPE-RCLLYSMKLWGDNL 191 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~--~~~l~~~~-~~~~~s~~~~~~s~ 191 (1398)
+..+.++.+|...+.|+.=.+ ....+...|+++.+||.+..+. ...+.-.. ..+..++++.+ .+
T Consensus 91 -------~~~i~~~~g~~~~~~cv~a~~-----~~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~-~~ 157 (764)
T KOG1063|consen 91 -------LIKIYTIQGHCKECVCVVARS-----SVMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALK-NN 157 (764)
T ss_pred -------eEEEEeecCcceeEEEEEeee-----eEEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhc-cC
Confidence 677888888766655554322 2233336899999999965552 22222111 11223333333 34
Q ss_pred CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC--
Q 000602 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-- 269 (1398)
Q Consensus 192 d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~-- 269 (1398)
+.-+++.|+.+..|.++.-.. .+.+.+..+.||.++|.+|+|...+.
T Consensus 158 ~~~lla~Ggs~~~v~~~s~~~-------------------------------d~f~~v~el~GH~DWIrsl~f~~~~~~~ 206 (764)
T KOG1063|consen 158 KTFLLACGGSKFVVDLYSSSA-------------------------------DSFARVAELEGHTDWIRSLAFARLGGDD 206 (764)
T ss_pred CcEEEEecCcceEEEEeccCC-------------------------------cceeEEEEeeccchhhhhhhhhccCCCc
Confidence 445566677777787776540 14677889999999999999987554
Q ss_pred -EEEEEECCCeEEEEEcCCCcccC------------CCC----ceEee-----eeEEecCCccEEEEEEcC--CEEEEEe
Q 000602 270 -KLVSVSDDRSARIWEVRAEYWKD------------SDS----IEEVG-----SSVLYGHNARVWDCCLTD--SFIITAG 325 (1398)
Q Consensus 270 -~LaS~s~Dg~V~iWd~~~~~~~~------------~~~----~~~i~-----~~~~~gh~~~V~~l~~s~--~~l~sgs 325 (1398)
+|+|+|+|+.||||.+.-+...+ ..+ ...+. -..+.||+.+|.++.|++ ..|++++
T Consensus 207 ~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~eall~GHeDWV~sv~W~p~~~~LLSAS 286 (764)
T KOG1063|consen 207 LLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEALLMGHEDWVYSVWWHPEGLDLLSAS 286 (764)
T ss_pred EEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhhhhcCcccceEEEEEccchhhheecc
Confidence 78999999999999987544210 000 00110 024559999999999995 4799999
Q ss_pred CCCcEEEEcCC---CceEE-----EEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCC
Q 000602 326 EDCTCRVWGSD---GKQLK-----MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGR 397 (1398)
Q Consensus 326 ~Dg~i~vWd~~---g~~l~-----~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~ 397 (1398)
.|.++.+|..+ |--+. .+.+..+ +.++..|+|+++.+++-|.-|..++|....
T Consensus 287 aDksmiiW~pd~~tGiWv~~vRlGe~gg~a~-GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d------------------ 347 (764)
T KOG1063|consen 287 ADKSMIIWKPDENTGIWVDVVRLGEVGGSAG-GFWGGLWSPNSNVIIAHGRTGGFHLWKTKD------------------ 347 (764)
T ss_pred cCcceEEEecCCccceEEEEEEeeccccccc-ceeeEEEcCCCCEEEEecccCcEEEEeccC------------------
Confidence 99999999983 22222 2223333 689999999999999999999999998421
Q ss_pred ccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEE-EeecCCCceeEEEEeec-CCccEEEEeccCC
Q 000602 398 TEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHT-KLCDMDSVNWNKILQVS-EGMPIICMDLLSN 475 (1398)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~-~l~~~~~~~w~~i~~~~-~~~~i~~l~~~~~ 475 (1398)
...+.. .....+|...|+.++|.|.|.+|++.+.++..++ .-| .+...|.++.+.. +++.+.|+.+.+.
T Consensus 348 ~~~w~~--------~~~iSGH~~~V~dv~W~psGeflLsvs~DQTTRlFa~w-g~q~~wHEiaRPQiHGyDl~c~~~vn~ 418 (764)
T KOG1063|consen 348 KTFWTQ--------EPVISGHVDGVKDVDWDPSGEFLLSVSLDQTTRLFARW-GRQQEWHEIARPQIHGYDLTCLSFVNE 418 (764)
T ss_pred ccceee--------ccccccccccceeeeecCCCCEEEEeccccceeeeccc-ccccceeeecccccccccceeeehccC
Confidence 111111 1233478889999999999998888765554332 222 2333488875543 4788888887542
Q ss_pred CCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceee-eeeee---cCcccceeEEEEEecCCCcEEEE-EcCCCcE-EE
Q 000602 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSF-TFTWS---AGIERQLLGTYWCKSLGHRFIFT-ADPKGRL-KL 549 (1398)
Q Consensus 476 ~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~-~~~~~---~~~~~~~l~~~~~~s~d~~~L~s-~s~dg~I-~i 549 (1398)
+-..++|..+.-+|+|+....-...-... ..... ....+..+. .+..|+ +-++- -..+|.. ..
T Consensus 419 --------~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~Vp-aLGLSn--Ka~~~~e~~~G~~~~~ 487 (764)
T KOG1063|consen 419 --------DLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVP-ALGLSN--KAFFPGETNTGGEAAV 487 (764)
T ss_pred --------CceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccc-cccccC--CCCcccccccccccce
Confidence 34567777778889998754221100000 00000 000111000 011111 11110 0011111 11
Q ss_pred E-ecCCCCC-----ccccc-cCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCe-----EEEEECCCcccccc
Q 000602 550 W-QLCDPFS-----SVCYE-SSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN-----LVLFPLLRDLLNDK 617 (1398)
Q Consensus 550 W-di~~~~~-----~~~~~-~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGt-----I~Iwd~~~~~~~~~ 617 (1398)
| ....... ..+.+ ...+..+-.......+|+.+|.|++.+|+|+++|++++... |++|+..+-
T Consensus 488 ~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W----- 562 (764)
T KOG1063|consen 488 CAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANW----- 562 (764)
T ss_pred eeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccch-----
Confidence 1 1110000 00000 01111221111223599999999999999999999998864 789987762
Q ss_pred cccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCcc-eeeeeeeeeeeeeeeEeEecC
Q 000602 618 SVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRES-LEFIGMKQVKELSLIQSVSAE 696 (1398)
Q Consensus 618 ~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~ 696 (1398)
...+.+ . .|. -+||.+.|+ +|+.+|++.|||.++.+|+...+... ..|.. .+.+ ..+|=...|.
T Consensus 563 --~~~~~L------~-~Hs-LTVT~l~FS---pdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~-~k~H-tRIIWdcsW~ 627 (764)
T KOG1063|consen 563 --LQVQEL------E-GHS-LTVTRLAFS---PDGRYLLSVSRDRTVSLYEVQEDIKDEFRFAC-LKAH-TRIIWDCSWS 627 (764)
T ss_pred --hhhhee------c-ccc-eEEEEEEEC---CCCcEEEEeecCceEEeeeeecccchhhhhcc-cccc-ceEEEEcccC
Confidence 111112 1 455 789999999 67899999999999999998654321 11111 2233 2233333343
Q ss_pred CCccCcccceEEeeeccccEEEEeCccc--eEE---EEeeccCcccccccccCCCCCCc-eEEEEEeccEEEEEEEeecc
Q 000602 697 NNSIDLASCNYAAGFASTDFIIWNLITE--AKV---VQIPCGGWRRPHSYFLGDVPEIK-NCFAYVKDEVIHIHRHWISN 770 (1398)
Q Consensus 697 ~~~~~~~~~~~v~Gf~s~~~~iWn~~~~--~el---~~i~CGG~hR~w~~~~~~~~~~~-~~f~~~k~~~i~~~~~~~~~ 770 (1398)
| +..-++++.+++.+++|.+.+. ..+ +.+.-+++--.-+|.+....+.. .+.+..+.|.|.+|+.....
T Consensus 628 p-----de~~FaTaSRDK~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~ 702 (764)
T KOG1063|consen 628 P-----DEKYFATASRDKKVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREH 702 (764)
T ss_pred c-----ccceeEEecCCceEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEeccccc
Confidence 2 2334899999999999998776 222 33444555444445444455555 55678999999999853211
Q ss_pred CcCC-----ccccccccCCCcceeeEEEeecccccccccccccCCCCCeEEEEeecCCeEEEEEec
Q 000602 771 GERK-----MFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1398)
Q Consensus 771 ~~~~-----~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~laTGseD~tIrl~~~~ 831 (1398)
+... ...+.-..+.|-..|+-+++.|. -+. +.....++.-|+.|++|.++||+++.
T Consensus 703 ~~~~~~~~~~~~~l~~~~~~~~aV~rl~w~p~---~~~--~~~~~~~~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 703 RQVTVGTFNLDTRLCATIGPDSAVNRLLWRPT---CSD--DWVEDKEWLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred ccccceeeeeccccccccChHHhhheeEeccc---ccc--ccccccceeEEeeecccceeEEeecc
Confidence 1111 01223345678889999999864 110 11122445678999999999999864
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-30 Score=285.81 Aligned_cols=535 Identities=15% Similarity=0.191 Sum_probs=372.7
Q ss_pred EEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCC--------eEEE
Q 000602 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN--------SIRV 161 (1398)
Q Consensus 90 ~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg--------~V~v 161 (1398)
-++.+-..-+.+++++.. ..+.+.+|++.|.|++.+| +.-++++|-.-+ .|++
T Consensus 78 E~vyfvA~V~Vl~n~ee~----------------~Qr~y~GH~ddikc~~vHP---dri~vatGQ~ag~~g~~~~phvri 138 (626)
T KOG2106|consen 78 ELVYFVAAVGVLYNWEER----------------SQRHYLGHNDDIKCMAVHP---DRIRVATGQGAGTSGRPLQPHVRI 138 (626)
T ss_pred cEEEEeccEEEEEeehhh----------------hcccccCCCCceEEEeecC---CceeeccCcccccCCCcCCCeeee
Confidence 455566677888888642 2345669999999999999 888888875444 5999
Q ss_pred EEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE--ECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG--TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg--s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
||..+-..+..+...++ -+.+++|...+ .|.++..- +.+..+.+||.+
T Consensus 139 Wdsv~L~TL~V~g~f~~-GV~~vaFsk~~-~G~~l~~vD~s~~h~lSVWdWq---------------------------- 188 (626)
T KOG2106|consen 139 WDSVTLSTLHVIGFFDR-GVTCVAFSKIN-GGSLLCAVDDSNPHMLSVWDWQ---------------------------- 188 (626)
T ss_pred cccccceeeeeeccccc-cceeeeecccC-CCceEEEecCCCccccchhhch----------------------------
Confidence 99877766666653332 35566665433 45555553 456778999988
Q ss_pred cccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecC-CccEEEEEEc-
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT- 317 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh-~~~V~~l~~s- 317 (1398)
.+......+.-...|....|+|...-|+.....+.+.+|+.+.+.. .+..+ .+.++ ...|.|++|.
T Consensus 189 -----k~~~~~~vk~sne~v~~a~FHPtd~nliit~Gk~H~~Fw~~~~~~l-----~k~~~--~fek~ekk~Vl~v~F~e 256 (626)
T KOG2106|consen 189 -----KKAKLGPVKTSNEVVFLATFHPTDPNLIITCGKGHLYFWTLRGGSL-----VKRQG--IFEKREKKFVLCVTFLE 256 (626)
T ss_pred -----hhhccCcceeccceEEEEEeccCCCcEEEEeCCceEEEEEccCCce-----EEEee--ccccccceEEEEEEEcC
Confidence 2333334445567889999999766555555567999999998866 33333 33333 2579999998
Q ss_pred CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccC
Q 000602 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNG 396 (1398)
Q Consensus 318 ~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~ 396 (1398)
+..++||..+|.|.||+. ..+..+....|.+ +|.++....+|.+| +|+.|..|..||-.-+.++
T Consensus 257 ngdviTgDS~G~i~Iw~~~~~~~~k~~~aH~g-gv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k~r------------- 321 (626)
T KOG2106|consen 257 NGDVITGDSGGNILIWSKGTNRISKQVHAHDG-GVFSLCMLRDGTLL-SGGKDRKIILWDDNYRKLR------------- 321 (626)
T ss_pred CCCEEeecCCceEEEEeCCCceEEeEeeecCC-ceEEEEEecCccEe-ecCccceEEeccccccccc-------------
Confidence 578999999999999999 5555566668988 79999999999755 5999999999994211111
Q ss_pred CccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCC
Q 000602 397 RTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1398)
Q Consensus 397 ~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~ 476 (1398)
.+..|+ ..++|+.++-...+ ++++|+...|+.-.+.+. +..+.++| ..+.+.+...
T Consensus 322 -----~~elPe----------~~G~iRtv~e~~~d-i~vGTtrN~iL~Gt~~~~----f~~~v~gh-~delwgla~h--- 377 (626)
T KOG2106|consen 322 -----ETELPE----------QFGPIRTVAEGKGD-ILVGTTRNFILQGTLENG----FTLTVQGH-GDELWGLATH--- 377 (626)
T ss_pred -----cccCch----------hcCCeeEEecCCCc-EEEeeccceEEEeeecCC----ceEEEEec-ccceeeEEcC---
Confidence 111222 33567777655444 889998888887666443 34556666 4477777663
Q ss_pred CCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCC
Q 000602 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPF 556 (1398)
Q Consensus 477 ~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~ 556 (1398)
+..+.+++++.|+.+++|+ ..+.. |...-+.... ...|+|.| .++.|...|...+.|.+...
T Consensus 378 -----ps~~q~~T~gqdk~v~lW~--~~k~~--------wt~~~~d~~~--~~~fhpsg-~va~Gt~~G~w~V~d~e~~~ 439 (626)
T KOG2106|consen 378 -----PSKNQLLTCGQDKHVRLWN--DHKLE--------WTKIIEDPAE--CADFHPSG-VVAVGTATGRWFVLDTETQD 439 (626)
T ss_pred -----CChhheeeccCcceEEEcc--CCcee--------EEEEecCcee--EeeccCcc-eEEEeeccceEEEEecccce
Confidence 4567899999999999999 22221 2211111111 25688999 99999999999999988632
Q ss_pred CccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccC
Q 000602 557 SSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1398)
Q Consensus 557 ~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg 636 (1398)
++.... . ..+++++.|+|+|.+||+|+.|+.|+||.++.+.+ ++... .-.||
T Consensus 440 --------------lv~~~~-d-~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~---------~y~r~---~k~~g 491 (626)
T KOG2106|consen 440 --------------LVTIHT-D-NEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR---------KYSRV---GKCSG 491 (626)
T ss_pred --------------eEEEEe-c-CCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc---------EEEEe---eeecC
Confidence 112111 2 67899999999999999999999999999987522 22111 12566
Q ss_pred cccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCcceeeeeeeeeeeeeeeEeEecCCCccCcccceEEeeeccccE
Q 000602 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDF 716 (1398)
Q Consensus 637 ~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~Gf~s~~~ 716 (1398)
..||.+.|+ .|+.+|.+.+.|..|.+|. .+..+ +...++.++ |. ...+..||.
T Consensus 492 -s~ithLDwS---~Ds~~~~~~S~d~eiLyW~--~~~~~-~~ts~kDvk---------W~-------t~~c~lGF~---- 544 (626)
T KOG2106|consen 492 -SPITHLDWS---SDSQFLVSNSGDYEILYWK--PSECK-QITSVKDVK---------WA-------TYTCTLGFE---- 544 (626)
T ss_pred -ceeEEeeec---CCCceEEeccCceEEEEEc--cccCc-ccceeccee---------ee-------eeEEEEEEE----
Confidence 899999999 6789999999999999993 22111 111111111 21 112333441
Q ss_pred EEEeCccceEEEEeeccCcccccccccCCCCCCceEEEEEeccEEEEEEEeeccCcCCccccccccCCCcceeeEEEeec
Q 000602 717 IIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVS 796 (1398)
Q Consensus 717 ~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~ 796 (1398)
...+.|+..|++++.+.
T Consensus 545 ---------------------------------------------------------------v~g~s~~t~i~a~~rs~ 561 (626)
T KOG2106|consen 545 ---------------------------------------------------------------VFGGSDGTDINAVARSH 561 (626)
T ss_pred ---------------------------------------------------------------EecccCCchHHHhhhhh
Confidence 01147888999998874
Q ss_pred ccccccccccccCCCCCeEEEEeecCCeEEEEEecCCCcccccccccccccCccceeeeeeeeeeccccccccCCccccc
Q 000602 797 ENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEIN 876 (1398)
Q Consensus 797 ~~~~~~~~~~~~~~~~~~~laTGseD~tIrl~~~~~~~~~~~~~~~l~~H~~gsav~~i~f~~~~~~~~~~~~~~~~~~~ 876 (1398)
. .+++|+|.+.|+|+|++|+-.+. -..+..+.+|. +.|+.++|+++
T Consensus 562 ~---------------~~~lA~gdd~g~v~lf~yPc~s~-rA~~he~~ghs--~~vt~V~Fl~~---------------- 607 (626)
T KOG2106|consen 562 C---------------EKLLASGDDFGKVHLFSYPCSSP-RAPSHEYGGHS--SHVTNVAFLCK---------------- 607 (626)
T ss_pred h---------------hhhhhccccCceEEEEccccCCC-cccceeecccc--ceeEEEEEeeC----------------
Confidence 3 67999999999999999986554 34577899999 99999999744
Q ss_pred ccccccccCCCCEEEEEecccceEEEEEE
Q 000602 877 RQNGVAEDKENPFLLISVGAKRVLTSWLL 905 (1398)
Q Consensus 877 ~d~~~~~~~~~~~ll~S~g~d~~i~vW~~ 905 (1398)
+..++.++ .|..|+.|++
T Consensus 608 ----------d~~li~tg-~D~Si~qW~l 625 (626)
T KOG2106|consen 608 ----------DSHLISTG-KDTSIMQWRL 625 (626)
T ss_pred ----------CceEEecC-CCceEEEEEe
Confidence 34555554 9999999986
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.7e-32 Score=282.37 Aligned_cols=281 Identities=18% Similarity=0.328 Sum_probs=248.7
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.+.|.++.|+ +| .++|++++ ||.+.|||.-|...++.++.... -|...+|+ |.| .++|++
T Consensus 54 H~~Ki~~~~ws--~D----sr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~s-------PSg----~~VAcG 115 (343)
T KOG0286|consen 54 HLNKIYAMDWS--TD----SRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAYS-------PSG----NFVACG 115 (343)
T ss_pred cccceeeeEec--CC----cCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEEC-------CCC----CeEEec
Confidence 89999999999 99 89999988 99999999999888888876544 89999999 998 799999
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
| |+...||++.+....+ ..+..+.+.+|++.+.|+.|.+ |+ .|+|++.|.+..+||+++++.+..+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------~~~v~r~l~gHtgylScC~f~d---D~-~ilT~SGD~TCalWDie~g~~~~~f 182 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------NVRVSRELAGHTGYLSCCRFLD---DN-HILTGSGDMTCALWDIETGQQTQVF 182 (343)
T ss_pred CcCceeEEEecccccccc---------cceeeeeecCccceeEEEEEcC---CC-ceEecCCCceEEEEEcccceEEEEe
Confidence 8 9999999998643111 1356678999999999999986 55 5779999999999999999999999
Q ss_pred ccCCcceEEEEEeecCCC-CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 174 HSPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~-d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
.+|... +.++.+ +| +++.+++|+-|+..++||++ .+..++.|
T Consensus 183 ~GH~gD-V~slsl---~p~~~ntFvSg~cD~~aklWD~R---------------------------------~~~c~qtF 225 (343)
T KOG0286|consen 183 HGHTGD-VMSLSL---SPSDGNTFVSGGCDKSAKLWDVR---------------------------------SGQCVQTF 225 (343)
T ss_pred cCCccc-EEEEec---CCCCCCeEEecccccceeeeecc---------------------------------CcceeEee
Confidence 988765 557776 45 89999999999999999999 67889999
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecC---CccEEEEEEc--CCEEEEEeCC
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---NARVWDCCLT--DSFIITAGED 327 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh---~~~V~~l~~s--~~~l~sgs~D 327 (1398)
.||+..|++|+|.|+|.-+++||+|++.|+||++..++ + ..+.| ...|++++|+ |++|+.|..|
T Consensus 226 ~ghesDINsv~ffP~G~afatGSDD~tcRlyDlRaD~~-----~------a~ys~~~~~~gitSv~FS~SGRlLfagy~d 294 (343)
T KOG0286|consen 226 EGHESDINSVRFFPSGDAFATGSDDATCRLYDLRADQE-----L------AVYSHDSIICGITSVAFSKSGRLLFAGYDD 294 (343)
T ss_pred cccccccceEEEccCCCeeeecCCCceeEEEeecCCcE-----E------eeeccCcccCCceeEEEcccccEEEeeecC
Confidence 99999999999999999999999999999999999766 2 33334 3478999998 8999999999
Q ss_pred CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 328 g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
.++.|||. .++.+..+.+|.++ |.++..+|||.-++||+.|.++|||.
T Consensus 295 ~~c~vWDtlk~e~vg~L~GHeNR-vScl~~s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 295 FTCNVWDTLKGERVGVLAGHENR-VSCLGVSPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred CceeEeeccccceEEEeeccCCe-eEEEEECCCCcEEEecchhHheeecC
Confidence 99999999 99999999999995 99999999999999999999999994
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-31 Score=299.77 Aligned_cols=523 Identities=13% Similarity=0.136 Sum_probs=348.4
Q ss_pred cEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-C--CcEEEEECCCCeEEEEEEeeeCccEEEEEEe
Q 000602 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 5 tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs 74 (1398)
+|.++|+++.. +..+++||||| ++ |+|+|+|. + +.++||+++....+++|..|+- .|.+++|+
T Consensus 59 vVVlfn~~~~tQ~hlvnssRk~~t~vAfS--~~----GryvatGEcG~~pa~kVw~la~h~vVAEfvdHKY-~vtcvaFs 131 (1080)
T KOG1408|consen 59 VVVLFNVDSCTQSHLVNSSRKPLTCVAFS--QN----GRYVATGECGRTPASKVWSLAFHGVVAEFVDHKY-NVTCVAFS 131 (1080)
T ss_pred EEEEEcccccchhheecccCcceeEEEEc--CC----CcEEEecccCCCccceeeeeccccchhhhhhccc-cceeeeec
Confidence 67889988765 45789999999 99 99999998 4 7899999999988999987764 79999999
Q ss_pred ccccccCCCCccceeEEEEEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 75 FINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
|.+ .++++.| |--|.+||+.... ...-..-...|..++|+. +|.+++
T Consensus 132 -------p~~----kyvvSVGsQHDMIVnv~dWr~N~----------------~~asnkiss~Vsav~fsE---dgSYfv 181 (1080)
T KOG1408|consen 132 -------PGN----KYVVSVGSQHDMIVNVNDWRVNS----------------SGASNKISSVVSAVAFSE---DGSYFV 181 (1080)
T ss_pred -------CCC----cEEEeeccccceEEEhhhhhhcc----------------cccccccceeEEEEEEcc---CCceee
Confidence 887 5666655 6788999887422 001112346789999999 999999
Q ss_pred EEECCCeEEEEEcCCCeEEE-------------EEc--------cCCc-c--eEEEEEe----ec---------------
Q 000602 152 IGCSDNSIRVWDISNSSIIL-------------EVH--------SPER-C--LLYSMKL----WG--------------- 188 (1398)
Q Consensus 152 tgs~Dg~V~vWd~~~~~~~~-------------~l~--------~~~~-~--~~~s~~~----~~--------------- 188 (1398)
|.+ ...|++|.++.++... .+. +..+ | ..|++.- ..
T Consensus 182 T~g-nrHvk~wyl~~~~KykdpiPl~gRs~~lg~lr~n~f~avaCg~gicAestfait~qGhLvEFSsRRLLDKWVqcRT 260 (1080)
T KOG1408|consen 182 TSG-NRHVKLWYLQIQSKYKDPIPLPGRSYFLGNLRFNEFLAVACGVGICAESTFAITAQGHLVEFSSRRLLDKWVQCRT 260 (1080)
T ss_pred eee-eeeEEEEEeeccccccCCccccchhhhccccccchhhhhhhcCcccccceEEEecccceeeechhhhhhhhhhhhc
Confidence 886 5789999997655210 110 0000 0 1111110 00
Q ss_pred -----CCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEE
Q 000602 189 -----DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1398)
Q Consensus 189 -----~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~va 263 (1398)
-.-...+|+.|+.+|.|++++..+-+..+...- ..+.......+... .......-.+.--.-.++.
T Consensus 261 TnAnCIcVs~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr-------~halg~d~a~~~q~--~~~~s~~~~a~fPD~IA~~ 331 (1080)
T KOG1408|consen 261 TNANCICVSSRLIACGCAKGMVRLFNPETLDYAGTLPR-------SHALGSDTANLSQP--EPKNSESSPAIFPDAIACQ 331 (1080)
T ss_pred cccceeeeecceEEEeeccceeeecCcchhhhcccccc-------ccccccchhhcccc--cccccccCcccCCceeEEE
Confidence 012456899999999999999875443322210 00000000000000 0000000011122345678
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-------------CCEEEEEeCCCcE
Q 000602 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------------DSFIITAGEDCTC 330 (1398)
Q Consensus 264 fspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-------------~~~l~sgs~Dg~i 330 (1398)
|+|...+|.....|..+++||+++... +... ..+.-|...||++.-- +.-|+|++.|++|
T Consensus 332 Fdet~~klscVYndhSlYvWDvrD~~k-----vgk~--~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TI 404 (1080)
T KOG1408|consen 332 FDETTDKLSCVYNDHSLYVWDVRDVNK-----VGKC--SSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSSDGTI 404 (1080)
T ss_pred ecCCCceEEEEEcCceEEEEecccccc-----ccce--eeeeeccceeeeeccccccccCcccccCCccceeEecCCCcE
Confidence 999999999999999999999998654 2222 2566788999987643 2579999999999
Q ss_pred EEEcCCC----ceEE----------EE---------ec--------------ccCccEEEEEEcCCCCEEEEEEcCCcEE
Q 000602 331 RVWGSDG----KQLK----------MI---------KE--------------HIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1398)
Q Consensus 331 ~vWd~~g----~~l~----------~l---------~~--------------h~~~~V~sl~~spdg~~latgg~Dg~I~ 373 (1398)
|+|++.+ .... .. .. ...-++.+++++|+|++||+|..-|.+|
T Consensus 405 RlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~Gnlr 484 (1080)
T KOG1408|consen 405 RLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLR 484 (1080)
T ss_pred EEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCcceecccCccCceE
Confidence 9999843 1100 00 00 0112699999999999999999999999
Q ss_pred EEEcCC-CCcccccCCCccc---ccc-------------CCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC--e-E
Q 000602 374 VHQFQA-FLPGSLESHPEAK---EFN-------------GRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--T-L 433 (1398)
Q Consensus 374 iwdl~~-~~l~~l~~~~~~v---~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg--~-l 433 (1398)
+|++.. ..+...+.|...+ .++ .+..+........-..+..+++|+..|+++.|...| . +
T Consensus 485 Vy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~Dv~rny~l~qtld~HSssITsvKFa~~gln~~M 564 (1080)
T KOG1408|consen 485 VYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYDVKRNYDLVQTLDGHSSSITSVKFACNGLNRKM 564 (1080)
T ss_pred EEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCceEEEEecccccchhhhhcccccceeEEEEeecCCceEE
Confidence 999943 4444555555432 111 122222222233334556778999999999999877 3 4
Q ss_pred EEEEcCCcEEEEEeecC-CCce-eEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCcccccee
Q 000602 434 YIATNHGYLYHTKLCDM-DSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS 511 (1398)
Q Consensus 434 lv~t~~g~i~~~~l~~~-~~~~-w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~ 511 (1398)
+.++.+..++ ++.... ..+. +.+-.+.-....++.|++.+ ..+++++++.|.+|+||++.+++....
T Consensus 565 iscGADksim-Fr~~qk~~~g~~f~r~t~t~~ktTlYDm~Vdp--------~~k~v~t~cQDrnirif~i~sgKq~k~-- 633 (1080)
T KOG1408|consen 565 ISCGADKSIM-FRVNQKASSGRLFPRHTQTLSKTTLYDMAVDP--------TSKLVVTVCQDRNIRIFDIESGKQVKS-- 633 (1080)
T ss_pred EeccCchhhh-eehhccccCceeccccccccccceEEEeeeCC--------CcceEEEEecccceEEEeccccceeee--
Confidence 4444444443 333221 1121 11111111245677888854 468999999999999999999876643
Q ss_pred eeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecC
Q 000602 512 FTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE 591 (1398)
Q Consensus 512 ~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spd 591 (1398)
++.....++.++. +...|.|.||+++..|+++.++|+-.+ ++.+. ..+|...||.+-|++|
T Consensus 634 --FKgs~~~eG~lIK--v~lDPSgiY~atScsdktl~~~Df~sg--------------EcvA~-m~GHsE~VTG~kF~nD 694 (1080)
T KOG1408|consen 634 --FKGSRDHEGDLIK--VILDPSGIYLATSCSDKTLCFVDFVSG--------------ECVAQ-MTGHSEAVTGVKFLND 694 (1080)
T ss_pred --ecccccCCCceEE--EEECCCccEEEEeecCCceEEEEeccc--------------hhhhh-hcCcchheeeeeeccc
Confidence 3344455566655 345789999999999999999998765 34444 3489999999999999
Q ss_pred CCEEEEecCCCeEEEEECCC
Q 000602 592 DEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 592 g~lLatGs~dGtI~Iwd~~~ 611 (1398)
-+.|++.+.||.|+||.++.
T Consensus 695 CkHlISvsgDgCIFvW~lp~ 714 (1080)
T KOG1408|consen 695 CKHLISVSGDGCIFVWKLPL 714 (1080)
T ss_pred chhheeecCCceEEEEECch
Confidence 99999999999999999875
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-30 Score=295.92 Aligned_cols=460 Identities=15% Similarity=0.210 Sum_probs=323.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
++..|.+|.|+ |. ..+++++- +|.|.|||.++...+..|.+.+- +|....|- +-- ..+++.+
T Consensus 12 rSdRVKsVd~H--Pt----ePw~la~LynG~V~IWnyetqtmVksfeV~~~-PvRa~kfi-------aRk---nWiv~Gs 74 (794)
T KOG0276|consen 12 RSDRVKSVDFH--PT----EPWILAALYNGDVQIWNYETQTMVKSFEVSEV-PVRAAKFI-------ARK---NWIVTGS 74 (794)
T ss_pred cCCceeeeecC--CC----CceEEEeeecCeeEEEecccceeeeeeeeccc-chhhheee-------ecc---ceEEEec
Confidence 67889999999 98 78888877 89999999999999999998655 89998887 432 1455555
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe-EEEEE
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEV 173 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-~~~~l 173 (1398)
.|..|+||+..+ ++.++.+..|.+.|.+++.+| ...+++|++.|-+|++||.+.+- +.+++
T Consensus 75 DD~~IrVfnynt---------------~ekV~~FeAH~DyIR~iavHP---t~P~vLtsSDDm~iKlW~we~~wa~~qtf 136 (794)
T KOG0276|consen 75 DDMQIRVFNYNT---------------GEKVKTFEAHSDYIRSIAVHP---TLPYVLTSSDDMTIKLWDWENEWACEQTF 136 (794)
T ss_pred CCceEEEEeccc---------------ceeeEEeeccccceeeeeecC---CCCeEEecCCccEEEEeeccCceeeeeEE
Confidence 589999999987 778999999999999999999 99999999999999999998764 45666
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
++|.. .+.+++|. ..|...+|+++-|++|+||.+. +..+..++.
T Consensus 137 eGH~H-yVMqv~fn--PkD~ntFaS~sLDrTVKVWslg---------------------------------s~~~nfTl~ 180 (794)
T KOG0276|consen 137 EGHEH-YVMQVAFN--PKDPNTFASASLDRTVKVWSLG---------------------------------SPHPNFTLE 180 (794)
T ss_pred cCcce-EEEEEEec--CCCccceeeeeccccEEEEEcC---------------------------------CCCCceeee
Confidence 66654 46677764 4567899999999999999998 566788999
Q ss_pred CccCCEEEEEEcC--CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCc
Q 000602 254 GHEGSIFRIEWSS--CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCT 329 (1398)
Q Consensus 254 gH~~~I~~vafsp--dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~ 329 (1398)
||+..|++|.|-+ |..+|+||++|.+|+|||..+..+ ++ ++.||...|..+.|+| ..++||++||+
T Consensus 181 gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~C-----V~-----TLeGHt~Nvs~v~fhp~lpiiisgsEDGT 250 (794)
T KOG0276|consen 181 GHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSC-----VQ-----TLEGHTNNVSFVFFHPELPIIISGSEDGT 250 (794)
T ss_pred ccccCcceEEeccCCCcceEEecCCCceEEEeecchHHH-----HH-----HhhcccccceEEEecCCCcEEEEecCCcc
Confidence 9999999999987 557999999999999999999888 54 9999999999999997 78999999999
Q ss_pred EEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeeCC
Q 000602 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1398)
Q Consensus 330 i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl-~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~ 407 (1398)
+|||+. +-+...++.-..+ .||+++-.+.+..++.|...|.|.+ .+ +.....+.. ....+-.....++.......
T Consensus 251 vriWhs~Ty~lE~tLn~gle-RvW~I~~~k~~~~i~vG~Deg~i~v-~lgreeP~vsMd-~~gKIiwa~~~ei~~~~~ks 327 (794)
T KOG0276|consen 251 VRIWNSKTYKLEKTLNYGLE-RVWCIAAHKGDGKIAVGFDEGSVTV-KLGREEPAVSMD-SNGKIIWAVHSEIQAVNLKS 327 (794)
T ss_pred EEEecCcceehhhhhhcCCc-eEEEEeecCCCCeEEEeccCCcEEE-EccCCCCceeec-CCccEEEEcCceeeeeecee
Confidence 999998 6666677776666 5999999998888888887776654 44 221111111 00001111111221111110
Q ss_pred Ccc------------ceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCC
Q 000602 408 FSE------------QIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSN 475 (1398)
Q Consensus 408 ~~~------------~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~ 475 (1398)
... .+..+..-.-+...++.+|+|++++.+++|....+.. ..|+...-+. ++++.+.
T Consensus 328 ~~~~~ev~DgErL~LsvKeLgs~eiyPq~L~hsPNGrfV~VcgdGEyiIyTa-----la~RnK~fG~------~~eFvw~ 396 (794)
T KOG0276|consen 328 VGAQKEVTDGERLPLSVKELGSVEIYPQTLAHSPNGRFVVVCGDGEYIIYTA-----LALRNKAFGS------GLEFVWA 396 (794)
T ss_pred ccCcccccCCccccchhhhccccccchHHhccCCCCcEEEEecCccEEEEEe-----eehhhccccc------ceeEEEc
Confidence 000 0011111112345778899999999999998665432 2233222222 2333332
Q ss_pred CCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCC
Q 000602 476 EPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1398)
Q Consensus 476 ~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~ 555 (1398)
.+.+..++-..++.|+++ .+.+.... +..... +..--|..|+..-.++.++++|-+.+
T Consensus 397 ------~dsne~avRes~~~vki~--knfke~ks------i~~~~~--------~e~i~gg~Llg~~ss~~~~fydW~~~ 454 (794)
T KOG0276|consen 397 ------ADSNEFAVRESNGNVKIF--KNFKEHKS------IRPDMS--------AEGIFGGPLLGVRSSDFLCFYDWESG 454 (794)
T ss_pred ------CCCCeEEEEecCCceEEE--ecceeccc------cccccc--------eeeecCCceEEEEeCCeEEEEEcccc
Confidence 455677888888999998 33332211 111111 11112234444455677888887754
Q ss_pred CCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCC
Q 000602 556 FSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 556 ~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~ 611 (1398)
.. +... .-..-.+.|+.+|.++++++.+. .+|+.++.
T Consensus 455 ~l--------------VrrI----~v~~k~v~w~d~g~lVai~~d~S-fyil~~n~ 491 (794)
T KOG0276|consen 455 EL--------------VRRI----EVTSKHVYWSDNGELVAIAGDDS-FYILKFNA 491 (794)
T ss_pred eE--------------EEEE----eeccceeEEecCCCEEEEEecCc-eeEEEecH
Confidence 31 1111 11124678999999999988875 56666554
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-31 Score=268.16 Aligned_cols=280 Identities=22% Similarity=0.335 Sum_probs=237.0
Q ss_pred CCCCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe--EEEEEEeeeCccEEEE
Q 000602 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT--LIRPFQVFHGIRLHGI 71 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~--~l~~~~~~~~~~V~~i 71 (1398)
|.|.|||+|...+|. ..+.|++|.+. || +++||++....||+||+.++. ++.+|.+|.. .|..+
T Consensus 17 ~YDhTIRfWqa~tG~C~rTiqh~dsqVNrLeiT--pd----k~~LAaa~~qhvRlyD~~S~np~Pv~t~e~h~k-NVtaV 89 (311)
T KOG0315|consen 17 GYDHTIRFWQALTGICSRTIQHPDSQVNRLEIT--PD----KKDLAAAGNQHVRLYDLNSNNPNPVATFEGHTK-NVTAV 89 (311)
T ss_pred cCcceeeeeehhcCeEEEEEecCccceeeEEEc--CC----cchhhhccCCeeEEEEccCCCCCceeEEeccCC-ceEEE
Confidence 579999999999997 24569999999 99 899999999999999999874 6889998866 69999
Q ss_pred EEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEE
Q 000602 72 SCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1398)
Q Consensus 72 ~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~L 150 (1398)
.|. .+| +-..+++ ||+++|||+.... . +..-.|..+|+++..+| +...|
T Consensus 90 gF~-------~dg----rWMyTgseDgt~kIWdlR~~~---------------~-qR~~~~~spVn~vvlhp---nQteL 139 (311)
T KOG0315|consen 90 GFQ-------CDG----RWMYTGSEDGTVKIWDLRSLS---------------C-QRNYQHNSPVNTVVLHP---NQTEL 139 (311)
T ss_pred EEe-------ecC----eEEEecCCCceEEEEeccCcc---------------c-chhccCCCCcceEEecC---CcceE
Confidence 999 888 5555555 9999999998622 2 23335789999999999 99999
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000602 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1398)
Q Consensus 151 atgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1398)
++|..+|.|++||+.+..+...+-......+.++.+ .+||..++++...|+.++|++-.....
T Consensus 140 is~dqsg~irvWDl~~~~c~~~liPe~~~~i~sl~v---~~dgsml~a~nnkG~cyvW~l~~~~~~-------------- 202 (311)
T KOG0315|consen 140 ISGDQSGNIRVWDLGENSCTHELIPEDDTSIQSLTV---MPDGSMLAAANNKGNCYVWRLLNHQTA-------------- 202 (311)
T ss_pred EeecCCCcEEEEEccCCccccccCCCCCcceeeEEE---cCCCcEEEEecCCccEEEEEccCCCcc--------------
Confidence 999999999999999887777666555556777777 689999999999999999998732211
Q ss_pred CCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~ 310 (1398)
....++..+..|++.|..+.+|||+++||++|.|.+++||+.++- .. .+ ..+.+|+.+
T Consensus 203 -------------s~l~P~~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~-~k----le----~~l~gh~rW 260 (311)
T KOG0315|consen 203 -------------SELEPVHKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDF-FK----LE----LVLTGHQRW 260 (311)
T ss_pred -------------ccceEhhheecccceEEEEEECCCCcEEEeecCCceEEEEecCCc-ee----eE----EEeecCCce
Confidence 145678889999999999999999999999999999999999885 10 11 488999999
Q ss_pred EEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEc
Q 000602 311 VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1398)
Q Consensus 311 V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~s 357 (1398)
+|+++|+ +.+|+||+.|+++++|++ .++.+..+.+|.. +..+++..
T Consensus 261 vWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh~K-~~vc~~ln 309 (311)
T KOG0315|consen 261 VWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGHHK-AAVCVALN 309 (311)
T ss_pred EEeeeeccCccEEEecCCCCceeecccccCceeeecCCccc-ccEEEEee
Confidence 9999998 689999999999999999 8999999999988 46666653
|
|
| >KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-28 Score=272.66 Aligned_cols=504 Identities=14% Similarity=0.189 Sum_probs=353.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-C--------CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-G--------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-d--------g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
|..+|.|++++ || .-.+++|. . +.++|||..+-.-++.+..++. .|.+++|++. ..|
T Consensus 103 H~ddikc~~vH--Pd----ri~vatGQ~ag~~g~~~~phvriWdsv~L~TL~V~g~f~~-GV~~vaFsk~-----~~G-- 168 (626)
T KOG2106|consen 103 HNDDIKCMAVH--PD----RIRVATGQGAGTSGRPLQPHVRIWDSVTLSTLHVIGFFDR-GVTCVAFSKI-----NGG-- 168 (626)
T ss_pred CCCceEEEeec--CC----ceeeccCcccccCCCcCCCeeeecccccceeeeeeccccc-cceeeeeccc-----CCC--
Confidence 77889999999 98 55566555 2 3599999888877777776666 6999999944 333
Q ss_pred ceeEEEEEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEE
Q 000602 87 VTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1398)
Q Consensus 87 ~~~~la~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd 163 (1398)
.++++-. +..+.+||+..+ ......+..++.|..+.|+| .+..|.+....+.+.+|+
T Consensus 169 --~~l~~vD~s~~h~lSVWdWqk~---------------~~~~~vk~sne~v~~a~FHP---td~nliit~Gk~H~~Fw~ 228 (626)
T KOG2106|consen 169 --SLLCAVDDSNPHMLSVWDWQKK---------------AKLGPVKTSNEVVFLATFHP---TDPNLIITCGKGHLYFWT 228 (626)
T ss_pred --ceEEEecCCCccccchhhchhh---------------hccCcceeccceEEEEEecc---CCCcEEEEeCCceEEEEE
Confidence 4555443 567999999852 23334445668899999999 555444444578999999
Q ss_pred cCCCeEEE---EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000602 164 ISNSSIIL---EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1398)
Q Consensus 164 ~~~~~~~~---~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1398)
++.+.... .++.+++..+.+++| .+++ -+++|..+|.|.||+..
T Consensus 229 ~~~~~l~k~~~~fek~ekk~Vl~v~F---~eng-dviTgDS~G~i~Iw~~~----------------------------- 275 (626)
T KOG2106|consen 229 LRGGSLVKRQGIFEKREKKFVLCVTF---LENG-DVITGDSGGNILIWSKG----------------------------- 275 (626)
T ss_pred ccCCceEEEeeccccccceEEEEEEE---cCCC-CEEeecCCceEEEEeCC-----------------------------
Confidence 99886644 456777788999998 4444 58899999999999987
Q ss_pred ccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCE
Q 000602 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSF 320 (1398)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~ 320 (1398)
..+..+....|.+.|+++....+|.+| ||+.|+.|..||-.-.+ .++ ..+....+.|..++-...-
T Consensus 276 ----~~~~~k~~~aH~ggv~~L~~lr~Gtll-SGgKDRki~~Wd~~y~k------~r~---~elPe~~G~iRtv~e~~~d 341 (626)
T KOG2106|consen 276 ----TNRISKQVHAHDGGVFSLCMLRDGTLL-SGGKDRKIILWDDNYRK------LRE---TELPEQFGPIRTVAEGKGD 341 (626)
T ss_pred ----CceEEeEeeecCCceEEEEEecCccEe-ecCccceEEeccccccc------ccc---ccCchhcCCeeEEecCCCc
Confidence 344444444899999999999998755 49999999999932221 121 2444455667777665333
Q ss_pred EEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000602 321 IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1398)
Q Consensus 321 l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~ 400 (1398)
|+.|..-+.|..=.++...-.+..+|.. ..|.++.+|+...++|++.|+.+++|+- .+ ..
T Consensus 342 i~vGTtrN~iL~Gt~~~~f~~~v~gh~d-elwgla~hps~~q~~T~gqdk~v~lW~~-~k------------------~~ 401 (626)
T KOG2106|consen 342 ILVGTTRNFILQGTLENGFTLTVQGHGD-ELWGLATHPSKNQLLTCGQDKHVRLWND-HK------------------LE 401 (626)
T ss_pred EEEeeccceEEEeeecCCceEEEEeccc-ceeeEEcCCChhheeeccCcceEEEccC-Cc------------------ee
Confidence 6777766666655565555556677877 6999999999999999999999999992 11 12
Q ss_pred EEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEee-cCCccEEEEeccCCCCCC
Q 000602 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKY 479 (1398)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~-~~~~~i~~l~~~~~~~~~ 479 (1398)
|+..+ ..+..|+.|.|.|.+.+++..|..+.++. .+.. +.+. .+..++.++..
T Consensus 402 wt~~~-------------~d~~~~~~fhpsg~va~Gt~~G~w~V~d~---e~~~---lv~~~~d~~~ls~v~y------- 455 (626)
T KOG2106|consen 402 WTKII-------------EDPAECADFHPSGVVAVGTATGRWFVLDT---ETQD---LVTIHTDNEQLSVVRY------- 455 (626)
T ss_pred EEEEe-------------cCceeEeeccCcceEEEeeccceEEEEec---ccce---eEEEEecCCceEEEEE-------
Confidence 33222 24689999999997777788887775443 3322 2222 23678888877
Q ss_pred cCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCcc
Q 000602 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSV 559 (1398)
Q Consensus 480 s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~ 559 (1398)
++++.++|+|+.|+.|+||.++.....-... ....+ .....+.||+|+++|.+-+.|-.|..|......+..
T Consensus 456 -sp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~------~k~~g-s~ithLDwS~Ds~~~~~~S~d~eiLyW~~~~~~~~t 527 (626)
T KOG2106|consen 456 -SPDGAFLAVGSHDNHIYIYRVSANGRKYSRV------GKCSG-SPITHLDWSSDSQFLVSNSGDYEILYWKPSECKQIT 527 (626)
T ss_pred -cCCCCEEEEecCCCeEEEEEECCCCcEEEEe------eeecC-ceeEEeeecCCCceEEeccCceEEEEEccccCcccc
Confidence 5778999999999999999998655332111 11111 222347799999999999999999999433322211
Q ss_pred ccccCccceeeeeee---eccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccC
Q 000602 560 CYESSKTNNVFLVAE---FSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHG 636 (1398)
Q Consensus 560 ~~~~~~~~~l~l~~~---~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg 636 (1398)
+..-..-.+-.+.-. |...+...|..++-+.+.++||+|+..|.|++|..+-.. ......-.+.|+
T Consensus 528 s~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yPc~s-----------~rA~~he~~ghs 596 (626)
T KOG2106|consen 528 SVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYPCSS-----------PRAPSHEYGGHS 596 (626)
T ss_pred eecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccccCC-----------Ccccceeecccc
Confidence 111001011112222 234678889999999999999999999999999876421 111223335787
Q ss_pred cccEEEEEEEeeCCCceEEEEEcCCccEEEEEE
Q 000602 637 ISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1398)
Q Consensus 637 ~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~ 669 (1398)
..|++|+|+. +...|++++.|..|..|++
T Consensus 597 -~~vt~V~Fl~---~d~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 597 -SHVTNVAFLC---KDSHLISTGKDTSIMQWRL 625 (626)
T ss_pred -ceeEEEEEee---CCceEEecCCCceEEEEEe
Confidence 8899999993 4477888889999999986
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.98 E-value=4.8e-30 Score=267.73 Aligned_cols=296 Identities=17% Similarity=0.238 Sum_probs=232.3
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC-----CeEEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-----SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~-----~~~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
+.+..++++|+++|..++..+ .+.+.|++++.|.++.+|++.. |..++.+.+|+. .+..+.. ++|+.+.
T Consensus 5 l~l~~tl~gh~d~Vt~la~~~--~~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~---s~dg~~a 78 (315)
T KOG0279|consen 5 LVLRGTLEGHTDWVTALAIKI--KNSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVL---SSDGNFA 78 (315)
T ss_pred heeeeeecCCCceEEEEEeec--CCCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEE---ccCCceE
Confidence 566778999999999999998 2467899999999999999854 566777877543 3444544 7899999
Q ss_pred EEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC
Q 000602 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1398)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~ 276 (1398)
++++.|+++++||+. .++..+.|.||...|.+++|+||.+.++|||.
T Consensus 79 lS~swD~~lrlWDl~---------------------------------~g~~t~~f~GH~~dVlsva~s~dn~qivSGSr 125 (315)
T KOG0279|consen 79 LSASWDGTLRLWDLA---------------------------------TGESTRRFVGHTKDVLSVAFSTDNRQIVSGSR 125 (315)
T ss_pred EeccccceEEEEEec---------------------------------CCcEEEEEEecCCceEEEEecCCCceeecCCC
Confidence 999999999999998 67888999999999999999999999999999
Q ss_pred CCeEEEEEcCCCcccCCCCceEeeeeEEe--cCCccEEEEEEcC----CEEEEEeCCCcEEEEcC-CCceEEEEecccCc
Q 000602 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLY--GHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1398)
Q Consensus 277 Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~--gh~~~V~~l~~s~----~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~ 349 (1398)
|++|++|+.-.... .+.. +|..+|.|+.|+| .+|++++.|+++++||+ +-+....+.+|.+
T Consensus 126 DkTiklwnt~g~ck-----------~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~~~~gh~~- 193 (315)
T KOG0279|consen 126 DKTIKLWNTLGVCK-----------YTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRTTFIGHSG- 193 (315)
T ss_pred cceeeeeeecccEE-----------EEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhhccccccc-
Confidence 99999999977543 2333 3478999999996 48999999999999999 5666778999999
Q ss_pred cEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEe
Q 000602 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1398)
Q Consensus 350 ~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs 428 (1398)
.++.++++|||..+++||.||.+.+||++ ++.+.++ ++...|++++|+
T Consensus 194 ~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~lysl-------------------------------~a~~~v~sl~fs 242 (315)
T KOG0279|consen 194 YVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKNLYSL-------------------------------EAFDIVNSLCFS 242 (315)
T ss_pred cEEEEEECCCCCEEecCCCCceEEEEEccCCceeEec-------------------------------cCCCeEeeEEec
Confidence 69999999999999999999999999994 3332222 233467888888
Q ss_pred cCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCcccc
Q 000602 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1398)
Q Consensus 429 ~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~ 508 (1398)
|+...|++... ..|+||++.++.++.
T Consensus 243 pnrywL~~at~------------------------------------------------------~sIkIwdl~~~~~v~ 268 (315)
T KOG0279|consen 243 PNRYWLCAATA------------------------------------------------------TSIKIWDLESKAVVE 268 (315)
T ss_pred CCceeEeeccC------------------------------------------------------CceEEEeccchhhhh
Confidence 77443333222 236666666655554
Q ss_pred ceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecC
Q 000602 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLC 553 (1398)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~ 553 (1398)
.+.+...-...+......+.++++++|..|+++-.|+.|++|.+.
T Consensus 269 ~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 269 ELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred hccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 443333222233333444557899999999999999999999864
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.5e-28 Score=286.36 Aligned_cols=309 Identities=19% Similarity=0.305 Sum_probs=248.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
.+..|..++|+ |. ..+++++- .|.|++||..-+.++..|..|++ +|.+|+|+ |.+ -+++++
T Consensus 8 kSsRvKglsFH--P~----rPwILtslHsG~IQlWDYRM~tli~rFdeHdG-pVRgv~FH-------~~q----plFVSG 69 (1202)
T KOG0292|consen 8 KSSRVKGLSFH--PK----RPWILTSLHSGVIQLWDYRMGTLIDRFDEHDG-PVRGVDFH-------PTQ----PLFVSG 69 (1202)
T ss_pred ccccccceecC--CC----CCEEEEeecCceeeeehhhhhhHHhhhhccCC-ccceeeec-------CCC----CeEEec
Confidence 34678999999 98 89999988 79999999999999999999888 89999999 776 577777
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
| |..|+||+... -+++.++.||-+.|..+.|++ .-..|++++.|.+|+||+..+++++..+
T Consensus 70 GDDykIkVWnYk~---------------rrclftL~GHlDYVRt~~FHh---eyPWIlSASDDQTIrIWNwqsr~~iavl 131 (1202)
T KOG0292|consen 70 GDDYKIKVWNYKT---------------RRCLFTLLGHLDYVRTVFFHH---EYPWILSASDDQTIRIWNWQSRKCIAVL 131 (1202)
T ss_pred CCccEEEEEeccc---------------ceehhhhccccceeEEeeccC---CCceEEEccCCCeEEEEeccCCceEEEE
Confidence 6 78999999986 568889999999999999999 8899999999999999999999999999
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCC-CCCcceeeecccccceeEEEEE
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS-SSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~-~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
.+|.- .+.+..| .|...++++++-|.+|+|||+..-+......+ +.... ........++-.. ..-..+.+
T Consensus 132 tGHnH-YVMcAqF---hptEDlIVSaSLDQTVRVWDisGLRkk~~~pg----~~e~~~~~~~~~~dLfg~~-DaVVK~VL 202 (1202)
T KOG0292|consen 132 TGHNH-YVMCAQF---HPTEDLIVSASLDQTVRVWDISGLRKKNKAPG----SLEDQMRGQQGNSDLFGQT-DAVVKHVL 202 (1202)
T ss_pred ecCce-EEEeecc---CCccceEEEecccceEEEEeecchhccCCCCC----CchhhhhccccchhhcCCc-Ceeeeeee
Confidence 87754 4667777 46678999999999999999973211110000 00000 0000111111110 22334678
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTC 330 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i 330 (1398)
.||...|+.++|+|.-..++||++|+.|++|.+...+. . ++ -+..||...|.++-|+| ++|++.|+|++|
T Consensus 203 EGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKa-----W-Ev--DtcrgH~nnVssvlfhp~q~lIlSnsEDksi 274 (1202)
T KOG0292|consen 203 EGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKA-----W-EV--DTCRGHYNNVSSVLFHPHQDLILSNSEDKSI 274 (1202)
T ss_pred cccccccceEEecCCcceEEecCCcceeeEEEeccccc-----e-ee--hhhhcccCCcceEEecCccceeEecCCCccE
Confidence 99999999999999999999999999999999987543 1 12 27889999999999997 899999999999
Q ss_pred EEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 331 ~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
||||+ ..+.+++|+...+ ..|.++.+|..++++ +|.|+-+.+|.++.
T Consensus 275 rVwDm~kRt~v~tfrrend-RFW~laahP~lNLfA-AgHDsGm~VFkleR 322 (1202)
T KOG0292|consen 275 RVWDMTKRTSVQTFRREND-RFWILAAHPELNLFA-AGHDSGMIVFKLER 322 (1202)
T ss_pred EEEecccccceeeeeccCC-eEEEEEecCCcceee-eecCCceEEEEEcc
Confidence 99999 6678889987777 499999999998765 56688888888853
|
|
| >KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-31 Score=290.31 Aligned_cols=271 Identities=20% Similarity=0.313 Sum_probs=236.5
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEee
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 143 (1398)
..+|..+.|+ +|+ ..|++++ +|.++||+... ...++++.||++.|.++.|+|.
T Consensus 175 ~rPis~~~fS-------~ds----~~laT~swsG~~kvW~~~~---------------~~~~~~l~gH~~~v~~~~fhP~ 228 (459)
T KOG0272|consen 175 TRPISGCSFS-------RDS----KHLATGSWSGLVKVWSVPQ---------------CNLLQTLRGHTSRVGAAVFHPV 228 (459)
T ss_pred CCcceeeEee-------cCC----CeEEEeecCCceeEeecCC---------------cceeEEEeccccceeeEEEccC
Confidence 3489999999 887 6777777 99999999985 5788899999999999999993
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCC
Q 000602 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1398)
Q Consensus 144 ~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1398)
+ ++..||||+.||++++|++.+...+..+.+|.. -+..++| .|+|.+|++++.|.+-++||+.
T Consensus 229 ~-~~~~lat~s~Dgtvklw~~~~e~~l~~l~gH~~-RVs~Vaf---HPsG~~L~TasfD~tWRlWD~~------------ 291 (459)
T KOG0272|consen 229 D-SDLNLATASADGTVKLWKLSQETPLQDLEGHLA-RVSRVAF---HPSGKFLGTASFDSTWRLWDLE------------ 291 (459)
T ss_pred C-CccceeeeccCCceeeeccCCCcchhhhhcchh-hheeeee---cCCCceeeecccccchhhcccc------------
Confidence 2 366899999999999999999889999988774 4556777 6889999999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeE
Q 000602 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1398)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~ 303 (1398)
+...+....||+..|++++|.|||..++||+.|..-||||++++++ + ..
T Consensus 292 ---------------------tk~ElL~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtgr~-----i-----m~ 340 (459)
T KOG0272|consen 292 ---------------------TKSELLLQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTGRC-----I-----MF 340 (459)
T ss_pred ---------------------cchhhHhhcccccccceeEecCCCceeeccCccchhheeecccCcE-----E-----EE
Confidence 5666777789999999999999999999999999999999999988 3 48
Q ss_pred EecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcC-CCCEEEEEEcCCcEEEEEcCC
Q 000602 304 LYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 304 ~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~sp-dg~~latgg~Dg~I~iwdl~~ 379 (1398)
+.+|..+|.+++|+ |-.|+|||.|++++|||+ ..+.+.++.+|.. -|+.+.|+| .|.+|+|++.|++++||...+
T Consensus 341 L~gH~k~I~~V~fsPNGy~lATgs~Dnt~kVWDLR~r~~ly~ipAH~n-lVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~ 419 (459)
T KOG0272|consen 341 LAGHIKEILSVAFSPNGYHLATGSSDNTCKVWDLRMRSELYTIPAHSN-LVSQVKYSPQEGYFLVTASYDNTVKIWSTRT 419 (459)
T ss_pred ecccccceeeEeECCCceEEeecCCCCcEEEeeecccccceecccccc-hhhheEecccCCeEEEEcccCcceeeecCCC
Confidence 89999999999999 468999999999999999 5667899999999 599999998 678999999999999999843
Q ss_pred -CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC
Q 000602 380 -FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1398)
Q Consensus 380 -~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g 440 (1398)
.+++++. +|.+.|-++.+++++.++++++-+
T Consensus 420 ~~~~ksLa------------------------------GHe~kV~s~Dis~d~~~i~t~s~D 451 (459)
T KOG0272|consen 420 WSPLKSLA------------------------------GHEGKVISLDISPDSQAIATSSFD 451 (459)
T ss_pred cccchhhc------------------------------CCccceEEEEeccCCceEEEeccC
Confidence 4444444 555789999999999988887543
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.97 E-value=8.5e-30 Score=282.24 Aligned_cols=315 Identities=16% Similarity=0.245 Sum_probs=258.3
Q ss_pred eccceEEEEEEecCCCCCCCC-EEEEEe-CCcEEEEECCC--Ce--EE----EEE-----EeeeCccEEEEEEecccccc
Q 000602 16 YLGEISALCFVHLPSHLSSLP-FLLAGS-GSQVLLYDLEA--GT--LI----RPF-----QVFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~-lLaag~-dg~I~Iwd~~t--g~--~l----~~~-----~~~~~~~V~~i~fs~~~~~~ 80 (1398)
|..+|++.+|+ |- .. +||+|+ +.+.++|++.. .. .. +.+ .++....|++++|+
T Consensus 177 ~~~~V~~~~Wn--P~----~~~llasg~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn------ 244 (524)
T KOG0273|consen 177 HESEVFICAWN--PL----RDGLLASGSGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN------ 244 (524)
T ss_pred CCCceEEEecC--ch----hhhhhhccCCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec------
Confidence 88999999999 86 44 888888 68999999874 11 11 111 12233579999999
Q ss_pred CCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeE
Q 000602 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1398)
Q Consensus 81 ~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V 159 (1398)
.+| .+||++. +|.+++|+.. +.++.++..|.++|.++.|+. +|++|++++.|+++
T Consensus 245 -~~G----~~LatG~~~G~~riw~~~----------------G~l~~tl~~HkgPI~slKWnk---~G~yilS~~vD~tt 300 (524)
T KOG0273|consen 245 -NDG----TLLATGSEDGEARIWNKD----------------GNLISTLGQHKGPIFSLKWNK---KGTYILSGGVDGTT 300 (524)
T ss_pred -CCC----CeEEEeecCcEEEEEecC----------------chhhhhhhccCCceEEEEEcC---CCCEEEeccCCccE
Confidence 888 6777766 9999999987 567788999999999999999 99999999999999
Q ss_pred EEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
.+||..++...+.+.-++.. ...+.|. +...+++.+.|+.|+|+.+.
T Consensus 301 ilwd~~~g~~~q~f~~~s~~-~lDVdW~----~~~~F~ts~td~~i~V~kv~---------------------------- 347 (524)
T KOG0273|consen 301 ILWDAHTGTVKQQFEFHSAP-ALDVDWQ----SNDEFATSSTDGCIHVCKVG---------------------------- 347 (524)
T ss_pred EEEeccCceEEEeeeeccCC-ccceEEe----cCceEeecCCCceEEEEEec----------------------------
Confidence 99999999888877755543 2334442 34579999999999999998
Q ss_pred cccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC-
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~- 318 (1398)
...|+.++.||.+.|.+|.|.|.+.+|+|+|+|++++||....... .. .+..|...|..+.|+|
T Consensus 348 -----~~~P~~t~~GH~g~V~alk~n~tg~LLaS~SdD~TlkiWs~~~~~~-----~~-----~l~~Hskei~t~~wsp~ 412 (524)
T KOG0273|consen 348 -----EDRPVKTFIGHHGEVNALKWNPTGSLLASCSDDGTLKIWSMGQSNS-----VH-----DLQAHSKEIYTIKWSPT 412 (524)
T ss_pred -----CCCcceeeecccCceEEEEECCCCceEEEecCCCeeEeeecCCCcc-----hh-----hhhhhccceeeEeecCC
Confidence 6778889999999999999999999999999999999999887765 33 7889999999999983
Q ss_pred ----------CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCccccc
Q 000602 319 ----------SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLE 386 (1398)
Q Consensus 319 ----------~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~ 386 (1398)
..+++++.|++|++||+ .+.++.+|..|.. +|.+++|+|+|+++|+|+.||.|.+|+.+ ++..+...
T Consensus 413 g~v~~n~~~~~~l~sas~dstV~lwdv~~gv~i~~f~kH~~-pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~ 491 (524)
T KOG0273|consen 413 GPVTSNPNMNLMLASASFDSTVKLWDVESGVPIHTLMKHQE-PVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQ 491 (524)
T ss_pred CCccCCCcCCceEEEeecCCeEEEEEccCCceeEeeccCCC-ceEEEEecCCCcEEEecCCCCeeEeccccchheeEeec
Confidence 47999999999999999 9999999999999 79999999999999999999999999994 23222221
Q ss_pred CCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EEcCCcEEEEE
Q 000602 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTK 446 (1398)
Q Consensus 387 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t~~g~i~~~~ 446 (1398)
....|..++|+.+|..+. +.+++.+..++
T Consensus 492 -------------------------------~~~~Ifel~Wn~~G~kl~~~~sd~~vcvld 521 (524)
T KOG0273|consen 492 -------------------------------GTGGIFELCWNAAGDKLGACASDGSVCVLD 521 (524)
T ss_pred -------------------------------CCCeEEEEEEcCCCCEEEEEecCCCceEEE
Confidence 224588899999886554 45666655443
|
|
| >KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.2e-29 Score=261.64 Aligned_cols=284 Identities=16% Similarity=0.220 Sum_probs=237.4
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECC-----CCeEEEEEEeeeCccEEEEEEeccccccCCCCcccee
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE-----AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~-----tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~ 89 (1398)
|.+.|++++.. +. ....+++++ |.++.+|++. .|..++.+.+|.. .|..++.+ +||+ .
T Consensus 14 h~d~Vt~la~~--~~---~~~~l~sasrDk~ii~W~L~~dd~~~G~~~r~~~GHsH-~v~dv~~s-------~dg~---~ 77 (315)
T KOG0279|consen 14 HTDWVTALAIK--IK---NSDILVSASRDKTIIVWKLTSDDIKYGVPVRRLTGHSH-FVSDVVLS-------SDGN---F 77 (315)
T ss_pred CCceEEEEEee--cC---CCceEEEcccceEEEEEEeccCccccCceeeeeeccce-EecceEEc-------cCCc---e
Confidence 88999999998 65 246777777 8999999875 4678899999776 79999999 9983 5
Q ss_pred EEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 90 ~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
.|.++-|+++++||+.. ++..+.|.||...|.+++|+| |.+.+++|+.|++|++|+......
T Consensus 78 alS~swD~~lrlWDl~~---------------g~~t~~f~GH~~dVlsva~s~---dn~qivSGSrDkTiklwnt~g~ck 139 (315)
T KOG0279|consen 78 ALSASWDGTLRLWDLAT---------------GESTRRFVGHTKDVLSVAFST---DNRQIVSGSRDKTIKLWNTLGVCK 139 (315)
T ss_pred EEeccccceEEEEEecC---------------CcEEEEEEecCCceEEEEecC---CCceeecCCCcceeeeeeecccEE
Confidence 55555599999999986 567888999999999999999 999999999999999999976655
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
.......++..+.+++|++. .+..+|++++.|++|++||++ ..+..
T Consensus 140 ~t~~~~~~~~WVscvrfsP~-~~~p~Ivs~s~DktvKvWnl~---------------------------------~~~l~ 185 (315)
T KOG0279|consen 140 YTIHEDSHREWVSCVRFSPN-ESNPIIVSASWDKTVKVWNLR---------------------------------NCQLR 185 (315)
T ss_pred EEEecCCCcCcEEEEEEcCC-CCCcEEEEccCCceEEEEccC---------------------------------Ccchh
Confidence 44444444788999999654 247799999999999999998 56677
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC-CEEEEEeCCC
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDC 328 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~-~~l~sgs~Dg 328 (1398)
..+.||.+.++.+++||||..+++|+.||.+.+||++.++. ....+|...|.+++|+| .+.+.+..+.
T Consensus 186 ~~~~gh~~~v~t~~vSpDGslcasGgkdg~~~LwdL~~~k~-----------lysl~a~~~v~sl~fspnrywL~~at~~ 254 (315)
T KOG0279|consen 186 TTFIGHSGYVNTVTVSPDGSLCASGGKDGEAMLWDLNEGKN-----------LYSLEAFDIVNSLCFSPNRYWLCAATAT 254 (315)
T ss_pred hccccccccEEEEEECCCCCEEecCCCCceEEEEEccCCce-----------eEeccCCCeEeeEEecCCceeEeeccCC
Confidence 78899999999999999999999999999999999999877 26678899999999996 5666667777
Q ss_pred cEEEEcC-CCceEEEEeccc--------CccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 329 TCRVWGS-DGKQLKMIKEHI--------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 329 ~i~vWd~-~g~~l~~l~~h~--------~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.|+|||+ ++..+..++... .....+++|+++|..|+.|-.|+.|++|.+.
T Consensus 255 sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 255 SIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred ceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEEEEEee
Confidence 8999999 666665554221 1125678899999999999999999999873
|
|
| >KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.3e-29 Score=256.85 Aligned_cols=282 Identities=19% Similarity=0.330 Sum_probs=230.6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCC
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 36 ~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~ 114 (1398)
-+|++++ |.+||+|...+|.+.++++..+. .|..+.+. |++ ..||+++...||+||+....
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C~rTiqh~ds-qVNrLeiT-------pdk----~~LAaa~~qhvRlyD~~S~n------ 72 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGICSRTIQHPDS-QVNRLEIT-------PDK----KDLAAAGNQHVRLYDLNSNN------ 72 (311)
T ss_pred eEEEeccCcceeeeeehhcCeEEEEEecCcc-ceeeEEEc-------CCc----chhhhccCCeeEEEEccCCC------
Confidence 4666655 89999999999999999995444 79999999 987 79999999999999998754
Q ss_pred CCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCc
Q 000602 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~ 194 (1398)
..++.++.+|+..|.+|.|.. +|+.++||++||+++|||++...+.+.+... ..+.++.+ .|+..
T Consensus 73 -------p~Pv~t~e~h~kNVtaVgF~~---dgrWMyTgseDgt~kIWdlR~~~~qR~~~~~--spVn~vvl---hpnQt 137 (311)
T KOG0315|consen 73 -------PNPVATFEGHTKNVTAVGFQC---DGRWMYTGSEDGTVKIWDLRSLSCQRNYQHN--SPVNTVVL---HPNQT 137 (311)
T ss_pred -------CCceeEEeccCCceEEEEEee---cCeEEEecCCCceEEEEeccCcccchhccCC--CCcceEEe---cCCcc
Confidence 347889999999999999999 9999999999999999999986665555433 44566665 46677
Q ss_pred EEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE-EeCccCCEEEEEEcCCCCEEEE
Q 000602 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR-LVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 195 ~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~-l~gH~~~I~~vafspdg~~LaS 273 (1398)
-|++|..+|.|++||+.. ...... +..-...|.++...|||.+|+.
T Consensus 138 eLis~dqsg~irvWDl~~---------------------------------~~c~~~liPe~~~~i~sl~v~~dgsml~a 184 (311)
T KOG0315|consen 138 ELISGDQSGNIRVWDLGE---------------------------------NSCTHELIPEDDTSIQSLTVMPDGSMLAA 184 (311)
T ss_pred eEEeecCCCcEEEEEccC---------------------------------CccccccCCCCCcceeeEEEcCCCcEEEE
Confidence 899999999999999982 222222 2234467999999999999999
Q ss_pred EECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcCCC--ceEEEEecccCc
Q 000602 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDG--KQLKMIKEHIGR 349 (1398)
Q Consensus 274 ~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~~g--~~l~~l~~h~~~ 349 (1398)
+...|...+|++-..... ..+.++ ..+..|+..+..+.++| ++|++++.|.+++||+.++ +....+.+|.+
T Consensus 185 ~nnkG~cyvW~l~~~~~~--s~l~P~--~k~~ah~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~r- 259 (311)
T KOG0315|consen 185 ANNKGNCYVWRLLNHQTA--SELEPV--HKFQAHNGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQR- 259 (311)
T ss_pred ecCCccEEEEEccCCCcc--ccceEh--hheecccceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCc-
Confidence 999999999999875431 113333 37889999999999994 8999999999999999954 44567889988
Q ss_pred cEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCcccccCC
Q 000602 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLESH 388 (1398)
Q Consensus 350 ~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~~~ 388 (1398)
-+|.++||.||.||+||+.|+.+|+|++. ++.++...+|
T Consensus 260 WvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~v~qy~gh 299 (311)
T KOG0315|consen 260 WVWDCAFSADGEYLVTASSDHTARLWDLSAGKEVRQYQGH 299 (311)
T ss_pred eEEeeeeccCccEEEecCCCCceeecccccCceeeecCCc
Confidence 59999999999999999999999999994 4444444443
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-29 Score=273.24 Aligned_cols=279 Identities=23% Similarity=0.345 Sum_probs=249.7
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|..+|+.+-|+ |+ ..++++++ |.+|++||..+|++...+++|.. .|..|+|+ ..| .+++++
T Consensus 107 ~r~~vt~v~~h--p~----~~~v~~as~d~tikv~D~~tg~~e~~LrGHt~-sv~di~~~-------a~G----k~l~tc 168 (406)
T KOG0295|consen 107 HRSSVTRVIFH--PS----EALVVSASEDATIKVFDTETGELERSLRGHTD-SVFDISFD-------ASG----KYLATC 168 (406)
T ss_pred cccceeeeeec--cC----ceEEEEecCCceEEEEEccchhhhhhhhcccc-ceeEEEEe-------cCc----cEEEec
Confidence 77889999999 98 67777776 79999999999999999999987 59999999 777 577776
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
+ |-.+++||.+. ..++++.+.+|...|.+++|.| .|.+|++++.|++|+.|++.++.++.++
T Consensus 169 SsDl~~~LWd~~~--------------~~~c~ks~~gh~h~vS~V~f~P---~gd~ilS~srD~tik~We~~tg~cv~t~ 231 (406)
T KOG0295|consen 169 SSDLSAKLWDFDT--------------FFRCIKSLIGHEHGVSSVFFLP---LGDHILSCSRDNTIKAWECDTGYCVKTF 231 (406)
T ss_pred CCccchhheeHHH--------------HHHHHHHhcCcccceeeEEEEe---cCCeeeecccccceeEEecccceeEEec
Confidence 6 66699999985 3577888889999999999999 9999999999999999999999999999
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
.+|.. .+..++. ..||.++|+++.|.+|++|-.. +.++...++
T Consensus 232 ~~h~e-wvr~v~v---~~DGti~As~s~dqtl~vW~~~---------------------------------t~~~k~~lR 274 (406)
T KOG0295|consen 232 PGHSE-WVRMVRV---NQDGTIIASCSNDQTLRVWVVA---------------------------------TKQCKAELR 274 (406)
T ss_pred cCchH-hEEEEEe---cCCeeEEEecCCCceEEEEEec---------------------------------cchhhhhhh
Confidence 88765 5555555 7899999999999999999988 566677889
Q ss_pred CccCCEEEEEEcCC---------------CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-
Q 000602 254 GHEGSIFRIEWSSC---------------GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1398)
Q Consensus 254 gH~~~I~~vafspd---------------g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s- 317 (1398)
+|+.+|.+++|.|. +.++.++|.|++|++||+.++.+. .++.+|..+|..++|+
T Consensus 275 ~hEh~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~cL----------~tL~ghdnwVr~~af~p 344 (406)
T KOG0295|consen 275 EHEHPVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMCL----------FTLVGHDNWVRGVAFSP 344 (406)
T ss_pred ccccceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeEE----------EEEecccceeeeeEEcC
Confidence 99999999999763 248999999999999999999873 4899999999999999
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 318 -~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
|++|+++.+|+++++||+ ++++++++..|.. -|++++|+.+..+++||+-|.++++|.-
T Consensus 345 ~Gkyi~ScaDDktlrvwdl~~~~cmk~~~ah~h-fvt~lDfh~~~p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 345 GGKYILSCADDKTLRVWDLKNLQCMKTLEAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWEC 405 (406)
T ss_pred CCeEEEEEecCCcEEEEEeccceeeeccCCCcc-eeEEEecCCCCceEEeccccceeeeeec
Confidence 799999999999999999 8999999999998 5999999999999999999999999963
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.97 E-value=9.2e-28 Score=273.00 Aligned_cols=429 Identities=13% Similarity=0.192 Sum_probs=301.9
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
..+|.+|+|+ |.- +..|++-=.|.|.||+.++ ...++.+.-..-+|.+..|.+
T Consensus 13 SdRVKsVd~H-------Pte---Pw~la~LynG~V~IWnyet---------------qtmVksfeV~~~PvRa~kfia-- 65 (794)
T KOG0276|consen 13 SDRVKSVDFH-------PTE---PWILAALYNGDVQIWNYET---------------QTMVKSFEVSEVPVRAAKFIA-- 65 (794)
T ss_pred CCceeeeecC-------CCC---ceEEEeeecCeeEEEeccc---------------ceeeeeeeecccchhhheeee--
Confidence 3489999999 553 3667766699999999987 567778877788999999999
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCC
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
..+.+++|+.|..|+||+..+++.+..++.|.. .+.++..| |...++++++.|-.|++||.+
T Consensus 66 -RknWiv~GsDD~~IrVfnynt~ekV~~FeAH~D-yIR~iavH---Pt~P~vLtsSDDm~iKlW~we------------- 127 (794)
T KOG0276|consen 66 -RKNWIVTGSDDMQIRVFNYNTGEKVKTFEAHSD-YIRSIAVH---PTLPYVLTSSDDMTIKLWDWE------------- 127 (794)
T ss_pred -ccceEEEecCCceEEEEecccceeeEEeecccc-ceeeeeec---CCCCeEEecCCccEEEEeecc-------------
Confidence 889999999999999999999999999998765 45677775 456699999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeE
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~ 303 (1398)
....+.+++.||+..|.+|+|+| |.+.+||+|-|++|++|.+...... .+
T Consensus 128 -------------------~~wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~n----------fT 178 (794)
T KOG0276|consen 128 -------------------NEWACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPN----------FT 178 (794)
T ss_pred -------------------CceeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCc----------ee
Confidence 25678889999999999999999 6789999999999999999887652 48
Q ss_pred EecCCccEEEEEEc-C---CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 304 LYGHNARVWDCCLT-D---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 304 ~~gh~~~V~~l~~s-~---~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.+|...|.|+.|- + .+|+||+.|.+++|||. +..+++++.+|.. .|..+.|+|.-.+++||+.||++|||+..
T Consensus 179 l~gHekGVN~Vdyy~~gdkpylIsgaDD~tiKvWDyQtk~CV~TLeGHt~-Nvs~v~fhp~lpiiisgsEDGTvriWhs~ 257 (794)
T KOG0276|consen 179 LEGHEKGVNCVDYYTGGDKPYLISGADDLTIKVWDYQTKSCVQTLEGHTN-NVSFVFFHPELPIIISGSEDGTVRIWNSK 257 (794)
T ss_pred eeccccCcceEEeccCCCcceEEecCCCceEEEeecchHHHHHHhhcccc-cceEEEecCCCcEEEEecCCccEEEecCc
Confidence 89999999999997 2 59999999999999999 8899999999999 69999999999999999999999999984
Q ss_pred CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEE
Q 000602 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1398)
Q Consensus 379 ~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i 458 (1398)
.-.+.. .++-.-+.+.|++-.+.+..++.+.+.....+++-.
T Consensus 258 Ty~lE~-----------------------------tLn~gleRvW~I~~~k~~~~i~vG~Deg~i~v~lgr--------- 299 (794)
T KOG0276|consen 258 TYKLEK-----------------------------TLNYGLERVWCIAAHKGDGKIAVGFDEGSVTVKLGR--------- 299 (794)
T ss_pred ceehhh-----------------------------hhhcCCceEEEEeecCCCCeEEEeccCCcEEEEccC---------
Confidence 321110 111122467788777766666655444433333221
Q ss_pred EeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEE---------EEcCCccccceeeeeeeecCcccceeEEEE
Q 000602 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV---------RVVGDVHTPQLSFTFTWSAGIERQLLGTYW 529 (1398)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iw---------d~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 529 (1398)
+.|...|+.. ++++ .+..+.|.-- ++.+|+.++.. . ..-....+.-..+
T Consensus 300 -----eeP~vsMd~~----------gKIi--wa~~~ei~~~~~ks~~~~~ev~DgErL~Ls---v--KeLgs~eiyPq~L 357 (794)
T KOG0276|consen 300 -----EEPAVSMDSN----------GKII--WAVHSEIQAVNLKSVGAQKEVTDGERLPLS---V--KELGSVEIYPQTL 357 (794)
T ss_pred -----CCCceeecCC----------ccEE--EEcCceeeeeeceeccCcccccCCccccch---h--hhccccccchHHh
Confidence 3333334321 1111 1111112111 22333322210 0 0000000101114
Q ss_pred EecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEEC
Q 000602 530 CKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1398)
Q Consensus 530 ~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~ 609 (1398)
..+|+|++++.++ ||...|+-.-. +...+-+.-..+.|++|.+..|+-..++.|++|.
T Consensus 358 ~hsPNGrfV~Vcg-dGEyiIyTala--------------------~RnK~fG~~~eFvw~~dsne~avRes~~~vki~k- 415 (794)
T KOG0276|consen 358 AHSPNGRFVVVCG-DGEYIIYTALA--------------------LRNKAFGSGLEFVWAADSNEFAVRESNGNVKIFK- 415 (794)
T ss_pred ccCCCCcEEEEec-CccEEEEEeee--------------------hhhcccccceeEEEcCCCCeEEEEecCCceEEEe-
Confidence 5689999988774 57777774211 0112223345678999988888988899999982
Q ss_pred CCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCc
Q 000602 610 LRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1398)
Q Consensus 610 ~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~ 674 (1398)
+. .....+.|-.. .-.+. +..|+..-.++.+++||++.+.+
T Consensus 416 -nf-------ke~ksi~~~~~-----------~e~i~-----gg~Llg~~ss~~~~fydW~~~~l 456 (794)
T KOG0276|consen 416 -NF-------KEHKSIRPDMS-----------AEGIF-----GGPLLGVRSSDFLCFYDWESGEL 456 (794)
T ss_pred -cc-------eeccccccccc-----------eeeec-----CCceEEEEeCCeEEEEEcccceE
Confidence 21 11112222110 01111 45677777788899999988753
|
|
| >KOG0286 consensus G-protein beta subunit [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.1e-27 Score=251.36 Aligned_cols=295 Identities=14% Similarity=0.210 Sum_probs=241.1
Q ss_pred ccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE
Q 000602 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1398)
Q Consensus 120 ~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg 199 (1398)
+.++..++|+||...|.++.|++ |.++|++++.||.+.|||.-+.....-++-+.. .+...+| +|.+.++|.|
T Consensus 43 i~~~~rr~LkGH~~Ki~~~~ws~---Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~-WVMtCA~---sPSg~~VAcG 115 (343)
T KOG0286|consen 43 IQMRTRRTLKGHLNKIYAMDWST---DSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSS-WVMTCAY---SPSGNFVACG 115 (343)
T ss_pred eeeeeEEEecccccceeeeEecC---CcCeEEeeccCCeEEEEEcccccceeEEecCce-eEEEEEE---CCCCCeEEec
Confidence 34666789999999999999999 999999999999999999998877777765543 4555566 8999999999
Q ss_pred ECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCe
Q 000602 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1398)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~ 279 (1398)
+-|+...||++.+.+..+ ..+..+.+.+|++.+.++.|.+| ..|+|+|.|.+
T Consensus 116 GLdN~Csiy~ls~~d~~g---------------------------~~~v~r~l~gHtgylScC~f~dD-~~ilT~SGD~T 167 (343)
T KOG0286|consen 116 GLDNKCSIYPLSTRDAEG---------------------------NVRVSRELAGHTGYLSCCRFLDD-NHILTGSGDMT 167 (343)
T ss_pred CcCceeEEEecccccccc---------------------------cceeeeeecCccceeEEEEEcCC-CceEecCCCce
Confidence 999999999998332111 23455678999999999999885 56889999999
Q ss_pred EEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEE
Q 000602 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCL 355 (1398)
Q Consensus 280 V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~ 355 (1398)
.-+||+++++. . ..+.||.+.|.++.+.| +.+++|+.|++.++||+ .+.++++|.+|..+ |.++.
T Consensus 168 CalWDie~g~~-----~-----~~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~~c~qtF~ghesD-INsv~ 236 (343)
T KOG0286|consen 168 CALWDIETGQQ-----T-----QVFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSGQCVQTFEGHESD-INSVR 236 (343)
T ss_pred EEEEEcccceE-----E-----EEecCCcccEEEEecCCCCCCeEEecccccceeeeeccCcceeEeecccccc-cceEE
Confidence 99999999876 3 38889999999999974 89999999999999999 89999999999995 99999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEE
Q 000602 356 YDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLY 434 (1398)
Q Consensus 356 ~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~ll 434 (1398)
|.|+|.-++||+.|++.|+||++. +.+..+.. +....+|++++|+..|++|
T Consensus 237 ffP~G~afatGSDD~tcRlyDlRaD~~~a~ys~----------------------------~~~~~gitSv~FS~SGRlL 288 (343)
T KOG0286|consen 237 FFPSGDAFATGSDDATCRLYDLRADQELAVYSH----------------------------DSIICGITSVAFSKSGRLL 288 (343)
T ss_pred EccCCCeeeecCCCceeEEEeecCCcEEeeecc----------------------------CcccCCceeEEEcccccEE
Confidence 999999999999999999999963 22222110 1123479999999999988
Q ss_pred EEE-cCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEE
Q 000602 435 IAT-NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1398)
Q Consensus 435 v~t-~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd 500 (1398)
.++ .+.... +|+.-...-.-++.+| +..|.|+.+ .|++--+++|+-|..++||.
T Consensus 289 fagy~d~~c~---vWDtlk~e~vg~L~GH-eNRvScl~~--------s~DG~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 289 FAGYDDFTCN---VWDTLKGERVGVLAGH-ENRVSCLGV--------SPDGMAVATGSWDSTLRIWA 343 (343)
T ss_pred EeeecCCcee---EeeccccceEEEeecc-CCeeEEEEE--------CCCCcEEEecchhHheeecC
Confidence 775 455555 5554333333456666 678999988 57788899999999999994
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-27 Score=247.46 Aligned_cols=295 Identities=19% Similarity=0.316 Sum_probs=235.2
Q ss_pred ceeeeecccCCCcEEEEEEEeecCC-CcEEEEEECCCeEEEEEcCCC---eEEEEEccCCcceEEEEEeecCCCCCcEEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNG-NRSLAIGCSDNSIRVWDISNS---SIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~d-g~~Latgs~Dg~V~vWd~~~~---~~~~~l~~~~~~~~~s~~~~~~s~d~~~la 197 (1398)
+..++.+.+|.++|+.++|+| . |..||+|+.|+.|++|+...+ .+...+...+...+.++++ +|.+.+|+
T Consensus 4 l~~~~~~~gh~~r~W~~awhp---~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAw---sp~g~~La 77 (312)
T KOG0645|consen 4 LILEQKLSGHKDRVWSVAWHP---GKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAW---SPHGRYLA 77 (312)
T ss_pred ceeEEeecCCCCcEEEEEecc---CCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeee---cCCCcEEE
Confidence 556788999999999999999 5 789999999999999999853 3344454555666778887 88999999
Q ss_pred EEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC
Q 000602 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD 277 (1398)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D 277 (1398)
+|+.|.++.||.-. ....+++..+.||+..|.+++|+++|++||+||.|
T Consensus 78 ~aSFD~t~~Iw~k~-------------------------------~~efecv~~lEGHEnEVK~Vaws~sG~~LATCSRD 126 (312)
T KOG0645|consen 78 SASFDATVVIWKKE-------------------------------DGEFECVATLEGHENEVKCVAWSASGNYLATCSRD 126 (312)
T ss_pred EeeccceEEEeecC-------------------------------CCceeEEeeeeccccceeEEEEcCCCCEEEEeeCC
Confidence 99999999999865 12577899999999999999999999999999999
Q ss_pred CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcCC-C---ceEEEEecccCccE
Q 000602 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-G---KQLKMIKEHIGRGI 351 (1398)
Q Consensus 278 g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~~-g---~~l~~l~~h~~~~V 351 (1398)
++|.||.+..... +.... .+.+|+..|-.+.|+| .+|++++.|.+|++|.-. + .+++++.+|.. .|
T Consensus 127 KSVWiWe~deddE-----fec~a--VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~-TV 198 (312)
T KOG0645|consen 127 KSVWIWEIDEDDE-----FECIA--VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN-TV 198 (312)
T ss_pred CeEEEEEecCCCc-----EEEEe--eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc-eE
Confidence 9999999986554 45553 8999999999999997 899999999999999872 3 57899999999 69
Q ss_pred EEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC
Q 000602 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1398)
Q Consensus 352 ~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg 431 (1398)
|+++|++.|..|++++.|++++||.+... ....|+..+..++|. ++
T Consensus 199 W~~~F~~~G~rl~s~sdD~tv~Iw~~~~~---------------------------------~~~~~sr~~Y~v~W~-~~ 244 (312)
T KOG0645|consen 199 WSLAFDNIGSRLVSCSDDGTVSIWRLYTD---------------------------------LSGMHSRALYDVPWD-NG 244 (312)
T ss_pred EEEEecCCCceEEEecCCcceEeeeeccC---------------------------------cchhcccceEeeeec-cc
Confidence 99999999999999999999999996311 011244567778888 66
Q ss_pred eEEEEEcCCcEEEEEeecCC-CceeEEEE--eecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEc
Q 000602 432 TLYIATNHGYLYHTKLCDMD-SVNWNKIL--QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1398)
Q Consensus 432 ~llv~t~~g~i~~~~l~~~~-~~~w~~i~--~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~ 502 (1398)
.+..++.++.+..++-.+.. ...|..+. ...++..|.++...+ ...++|++|+.||.+++|.+.
T Consensus 245 ~IaS~ggD~~i~lf~~s~~~d~p~~~l~~~~~~aHe~dVNsV~w~p-------~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 245 VIASGGGDDAIRLFKESDSPDEPSWNLLAKKEGAHEVDVNSVQWNP-------KVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred ceEeccCCCEEEEEEecCCCCCchHHHHHhhhcccccccceEEEcC-------CCCCceeecCCCceEEEEEec
Confidence 55556678877766554321 12243333 223345666666633 236889999999999999874
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.5e-25 Score=263.59 Aligned_cols=536 Identities=14% Similarity=0.185 Sum_probs=358.5
Q ss_pred CCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe-EEEEEEeeeCccEEEEEEe
Q 000602 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT-LIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 3 D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~-~l~~~~~~~~~~V~~i~fs 74 (1398)
|++..+||..+.. +...|+|++-. ..++.++++..|.+|-- |+ ..+.+..|. ..|+-+..-
T Consensus 55 gksfqvYd~~kl~ll~vs~~lp~~I~alas~--------~~~vy~A~g~~i~~~~r--gk~i~~~~~~~~-a~v~~l~~f 123 (910)
T KOG1539|consen 55 GKSFQVYDVNKLNLLFVSKPLPDKITALASD--------KDYVYVASGNKIYAYAR--GKHIRHTTLLHG-AKVHLLLPF 123 (910)
T ss_pred CceEEEEeccceEEEEecCCCCCceEEEEec--------CceEEEecCcEEEEEEc--cceEEEEecccc-ceEEEEeee
Confidence 5678888877654 66789999877 45899999999999973 43 345555555 468777643
Q ss_pred ccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE
Q 000602 75 FINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs 154 (1398)
| +.++++-.++.+.||+..... .+. ..+ ...++.-.+.|+++. +| +.--+.++.|+
T Consensus 124 ---------G---e~lia~d~~~~l~vw~~s~~~--~e~-------~l~-~~~~~~~~~~Ital~-HP-~TYLNKIvvGs 179 (910)
T KOG1539|consen 124 ---------G---EHLIAVDISNILFVWKTSSIQ--EEL-------YLQ-STFLKVEGDFITALL-HP-STYLNKIVVGS 179 (910)
T ss_pred ---------c---ceEEEEEccCcEEEEEecccc--ccc-------ccc-ceeeeccCCceeeEe-cc-hhheeeEEEee
Confidence 3 368888889999999998631 000 011 122222233477665 34 11234688999
Q ss_pred CCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCc
Q 000602 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1398)
Q Consensus 155 ~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1398)
.+|.+.+|++++++.+.+++... ..+.++. .+|-=..+|.|..+|+|.+++++
T Consensus 180 ~~G~lql~Nvrt~K~v~~f~~~~-s~IT~ie---qsPaLDVVaiG~~~G~ViifNlK----------------------- 232 (910)
T KOG1539|consen 180 SQGRLQLWNVRTGKVVYTFQEFF-SRITAIE---QSPALDVVAIGLENGTVIIFNLK----------------------- 232 (910)
T ss_pred cCCcEEEEEeccCcEEEEecccc-cceeEec---cCCcceEEEEeccCceEEEEEcc-----------------------
Confidence 99999999999999999998766 3344443 25667789999999999999999
Q ss_pred ceeeecccccceeEEEEEeCccCCEEEEEEcCCCCE-EEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEE
Q 000602 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1398)
Q Consensus 235 ~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~-LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~ 313 (1398)
.++.+..++.-.+.|++++|..||+. +++++..|.+.+||++..+. +. .....|.+.|..
T Consensus 233 ----------~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl-----~~----v~~nah~~sv~~ 293 (910)
T KOG1539|consen 233 ----------FDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKL-----IN----VTRNAHYGSVTG 293 (910)
T ss_pred ----------cCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCee-----ee----eeeccccCCccc
Confidence 67778888755699999999999975 57777889999999998766 22 255578888888
Q ss_pred EEEc--CCEEEEEeCCCcEEEEcC---CC--ceEEEEecccCccEEEEEEc-CCCCEEEEEEcCCcEEEEEcCCCCcccc
Q 000602 314 CCLT--DSFIITAGEDCTCRVWGS---DG--KQLKMIKEHIGRGIWRCLYD-SLSSLLVTAGFDSAIKVHQFQAFLPGSL 385 (1398)
Q Consensus 314 l~~s--~~~l~sgs~Dg~i~vWd~---~g--~~l~~l~~h~~~~V~sl~~s-pdg~~latgg~Dg~I~iwdl~~~~l~~l 385 (1398)
+.|. ...++|++.|..+++|=. +| +.++.=.+|.. |-.++.|. .+|..+.+++.|++++.+++.......-
T Consensus 294 ~~fl~~epVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~GHs~-Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~ 372 (910)
T KOG1539|consen 294 ATFLPGEPVLVTAGADNSLKVWVFDSGDGVPRLLRSRGGHSA-PPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQE 372 (910)
T ss_pred ceecCCCceEeeccCCCceeEEEeeCCCCcchheeeccCCCC-CchheeeeccCcEEEEecccCcchhhhhhhHHHHhHh
Confidence 8887 479999999999998855 33 44555567888 68899986 6788999999999999999832111110
Q ss_pred cCCCccccccCCccEEEeeeCCCcccee---eccCCCCcEEEEEEec------CCeEEEEEcCCcEEEEEeecCCCceeE
Q 000602 386 ESHPEAKEFNGRTEIFSIKIPNFSEQIR---LTDSKSEYVRCLHLTS------EDTLYIATNHGYLYHTKLCDMDSVNWN 456 (1398)
Q Consensus 386 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~V~~lafs~------dg~llv~t~~g~i~~~~l~~~~~~~w~ 456 (1398)
.++. .. +...+... ...-.-.+|..+++.. ++.+.+-.++-..+.|++.+...++|.
T Consensus 373 l~~~-----------~~---~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~n~~~G~~~ 438 (910)
T KOG1539|consen 373 LGQL-----------HN---KKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFRNKTSGRHV 438 (910)
T ss_pred hccc-----------cc---ccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEeccCcccccEE
Confidence 0110 00 00000000 0011112344444433 122233345566777777666666652
Q ss_pred EEEee--cCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCC
Q 000602 457 KILQV--SEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLG 534 (1398)
Q Consensus 457 ~i~~~--~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d 534 (1398)
.-... .....+.++.+ ...+++.++|...|.|.+|++.+|-...... -...+.+.+.+ ++...-
T Consensus 439 L~~~~~~~~~~~~~av~v--------s~CGNF~~IG~S~G~Id~fNmQSGi~r~sf~----~~~ah~~~V~g--la~D~~ 504 (910)
T KOG1539|consen 439 LDPKRFKKDDINATAVCV--------SFCGNFVFIGYSKGTIDRFNMQSGIHRKSFG----DSPAHKGEVTG--LAVDGT 504 (910)
T ss_pred ecCccccccCcceEEEEE--------eccCceEEEeccCCeEEEEEcccCeeecccc----cCccccCceeE--EEecCC
Confidence 21110 02344555554 3568999999999999999999876543211 12233344444 233445
Q ss_pred CcEEEEEcCCCcEEEEecCCCCCccccccC-------------------ccceee--------eeeeeccccCCcEEEEE
Q 000602 535 HRFIFTADPKGRLKLWQLCDPFSSVCYESS-------------------KTNNVF--------LVAEFSSCFGARIMCLD 587 (1398)
Q Consensus 535 ~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~-------------------~~~~l~--------l~~~~~~~h~~~Itsla 587 (1398)
++.+++++.+|.++.|++............ ....+. ...+| .+|+.+|+.++
T Consensus 505 n~~~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f-~gh~nritd~~ 583 (910)
T KOG1539|consen 505 NRLLVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREF-WGHGNRITDMT 583 (910)
T ss_pred CceEEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHh-hccccceeeeE
Confidence 677999999999999999865421111000 001111 11121 37999999999
Q ss_pred eecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCC-ccEEE
Q 000602 588 ASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGD-GCICY 666 (1398)
Q Consensus 588 ~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~D-G~i~i 666 (1398)
|||||++|++++.|++|++||+.++.. + . +.+-....+++.|+ |++.+|+|+-.| .-|.+
T Consensus 584 FS~DgrWlisasmD~tIr~wDlpt~~l----------I---D---~~~vd~~~~sls~S---PngD~LAT~Hvd~~gIyl 644 (910)
T KOG1539|consen 584 FSPDGRWLISASMDSTIRTWDLPTGTL----------I---D---GLLVDSPCTSLSFS---PNGDFLATVHVDQNGIYL 644 (910)
T ss_pred eCCCCcEEEEeecCCcEEEEeccCcce----------e---e---eEecCCcceeeEEC---CCCCEEEEEEecCceEEE
Confidence 999999999999999999999998631 1 1 11112567888888 678999999999 56888
Q ss_pred EE
Q 000602 667 LE 668 (1398)
Q Consensus 667 w~ 668 (1398)
|.
T Consensus 645 Ws 646 (910)
T KOG1539|consen 645 WS 646 (910)
T ss_pred EE
Confidence 86
|
|
| >KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=4.7e-26 Score=262.91 Aligned_cols=580 Identities=15% Similarity=0.196 Sum_probs=370.8
Q ss_pred CCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCC---EEEEEe-CCcEEEEECCCCe--EEEEEEeeeCccEE
Q 000602 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLP---FLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLH 69 (1398)
Q Consensus 3 D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~---lLaag~-dg~I~Iwd~~tg~--~l~~~~~~~~~~V~ 69 (1398)
...|.+||..+.. |.++|+|+.+. |+ .+ ++++|+ |+.|++|.++... .+.++++| .+.
T Consensus 33 ~~~Iav~dp~k~~i~t~l~GH~a~VnC~~~l--~~----s~~~a~~vsG~sD~~v~lW~l~~~~~~~i~~~~g~---~~~ 103 (764)
T KOG1063|consen 33 GPAIAVADPEKILIVTTLDGHVARVNCVHWL--PT----SEIVAEMVSGDSDGRVILWKLRDEYLIKIYTIQGH---CKE 103 (764)
T ss_pred CceEEEeCcccceeEEeccCCccceEEEEEc--cc----ccccceEEEccCCCcEEEEEEeehheEEEEeecCc---cee
Confidence 4568899977653 99999999999 87 34 677777 8999999998443 34455542 344
Q ss_pred EEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCC-----C---CCCCC-------CC--c---------------
Q 000602 70 GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL-----S---PNSQY-------QP--E--------------- 117 (1398)
Q Consensus 70 ~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~-----~---~~~~~-------~~--~--------------- 117 (1398)
++++... +. ...+.+.++.+.+|+.+.++ . ....+ .+ +
T Consensus 104 ~~cv~a~-----~~-----~~~~~~ad~~v~vw~~~~~e~~~~~~~rf~~k~~ipLcL~~~~~~~~~lla~Ggs~~~v~~ 173 (764)
T KOG1063|consen 104 CVCVVAR-----SS-----VMTCKAADGTVSVWDKQQDEVFLLAVLRFEIKEAIPLCLAALKNNKTFLLACGGSKFVVDL 173 (764)
T ss_pred EEEEEee-----ee-----EEEeeccCceEEEeecCCCceeeehheehhhhhHhhHHHhhhccCCcEEEEecCcceEEEE
Confidence 5555410 11 11222468999999984322 0 00000 00 0
Q ss_pred ---ccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe---------------------EEEE-
Q 000602 118 ---TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS---------------------IILE- 172 (1398)
Q Consensus 118 ---~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~---------------------~~~~- 172 (1398)
..-.++.+..+.||.+||.+++|.....+.-+||+++.|..||||.+.-+. ....
T Consensus 174 ~s~~~d~f~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i 253 (764)
T KOG1063|consen 174 YSSSADSFARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEI 253 (764)
T ss_pred eccCCcceeEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeE
Confidence 011357788999999999999998743344589999999999999884322 0101
Q ss_pred --------EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 173 --------VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 173 --------l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
+...+...++++.| .|.+..|++++.|.++.+|..... .-+|..
T Consensus 254 ~~~is~eall~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~-----------------------tGiWv~-- 305 (764)
T KOG1063|consen 254 QYRISFEALLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDEN-----------------------TGIWVD-- 305 (764)
T ss_pred EEEEehhhhhcCcccceEEEEE---ccchhhheecccCcceEEEecCCc-----------------------cceEEE--
Confidence 11244557888877 577889999999999999998721 112211
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEE
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~ 322 (1398)
.-.+..+.|..+.-++.-|+|++..+++-+..|-.++|...+... .... ....||...|.+++|+ |.+|+
T Consensus 306 -~vRlGe~gg~a~GF~g~lw~~n~~~ii~~g~~Gg~hlWkt~d~~~-----w~~~--~~iSGH~~~V~dv~W~psGeflL 377 (764)
T KOG1063|consen 306 -VVRLGEVGGSAGGFWGGLWSPNSNVIIAHGRTGGFHLWKTKDKTF-----WTQE--PVISGHVDGVKDVDWDPSGEFLL 377 (764)
T ss_pred -EEEeecccccccceeeEEEcCCCCEEEEecccCcEEEEeccCccc-----eeec--cccccccccceeeeecCCCCEEE
Confidence 122333445566788999999999999999999999999333222 1111 2778999999999998 79999
Q ss_pred EEeCCCcEEEEcCCCce-----EEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccc---cC-----C-
Q 000602 323 TAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSL---ES-----H- 388 (1398)
Q Consensus 323 sgs~Dg~i~vWd~~g~~-----l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l---~~-----~- 388 (1398)
+.|.|.|-|+|-.-|++ +..-+.|.. .++|++|-+....+++|.....+|+|+.....++.+ .+ .
T Consensus 378 svs~DQTTRlFa~wg~q~~wHEiaRPQiHGy-Dl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~ 456 (764)
T KOG1063|consen 378 SVSLDQTTRLFARWGRQQEWHEIARPQIHGY-DLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSD 456 (764)
T ss_pred Eeccccceeeecccccccceeeecccccccc-cceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCch
Confidence 99999999999874332 333345666 489999987666889999999999999843221111 11 0
Q ss_pred -------Ccccccc---------CCccE----EE---------eeeCCCc---------cceeeccCCCCcEEEEEEecC
Q 000602 389 -------PEAKEFN---------GRTEI----FS---------IKIPNFS---------EQIRLTDSKSEYVRCLHLTSE 430 (1398)
Q Consensus 389 -------~~~v~~~---------~~~~~----~~---------~~~~~~~---------~~~~~~~~~~~~V~~lafs~d 430 (1398)
....+.+ ..+.. +. +..|..+ ..+..+-+|...|.+++.+|+
T Consensus 457 ~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~ 536 (764)
T KOG1063|consen 457 ELPDGANVPALGLSNKAFFPGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPT 536 (764)
T ss_pred hcccccccccccccCCCCcccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCC
Confidence 0000000 00000 00 0001111 122223378889999999999
Q ss_pred CeEEEEEcCCc---EEEEEeecCCCceeEEEE--eecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCc
Q 000602 431 DTLYIATNHGY---LYHTKLCDMDSVNWNKIL--QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDV 505 (1398)
Q Consensus 431 g~llv~t~~g~---i~~~~l~~~~~~~w~~i~--~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~ 505 (1398)
+.+++++.... --.+.+|+..+ |.++. .+| ...|.-+.+ ++++++|++.+.|.++.+|+.....
T Consensus 537 gnliASaCKS~~~ehAvI~lw~t~~--W~~~~~L~~H-sLTVT~l~F--------Spdg~~LLsvsRDRt~sl~~~~~~~ 605 (764)
T KOG1063|consen 537 GNLIASACKSSLKEHAVIRLWNTAN--WLQVQELEGH-SLTVTRLAF--------SPDGRYLLSVSRDRTVSLYEVQEDI 605 (764)
T ss_pred CCEEeehhhhCCccceEEEEEeccc--hhhhheeccc-ceEEEEEEE--------CCCCcEEEEeecCceEEeeeeeccc
Confidence 99999864332 22334666544 54443 333 556666766 5789999999999999999985433
Q ss_pred cccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEE
Q 000602 506 HTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMC 585 (1398)
Q Consensus 506 ~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Its 585 (1398)
.. . ..+.. ...+.+++= -..++|++.+++|++.|++|++|..++.... .+.-.+ ...++..||+
T Consensus 606 ~~-e--~~fa~-~k~HtRIIW-dcsW~pde~~FaTaSRDK~VkVW~~~~~~d~---------~i~~~a--~~~~~~aVTA 669 (764)
T KOG1063|consen 606 KD-E--FRFAC-LKAHTRIIW-DCSWSPDEKYFATASRDKKVKVWEEPDLRDK---------YISRFA--CLKFSLAVTA 669 (764)
T ss_pred ch-h--hhhcc-ccccceEEE-EcccCcccceeEEecCCceEEEEeccCchhh---------hhhhhc--hhccCCceee
Confidence 21 1 11111 122233221 1347899999999999999999998865210 001001 2367888999
Q ss_pred EEeec-----CCCEEEEecCCCeEEEEECCCccccccccc--ceeeecccceeccccCcccEEEEEEEeeC-------CC
Q 000602 586 LDASF-----EDEVLFCGDLRGNLVLFPLLRDLLNDKSVA--LHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SN 651 (1398)
Q Consensus 586 la~Sp-----dg~lLatGs~dGtI~Iwd~~~~~~~~~~~~--~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~-------~~ 651 (1398)
+++.| .+.++++|-+.|.|.||........-+... ....+.+. ..|. +.|+.+.|.+.. ..
T Consensus 670 v~~~~~~~~e~~~~vavGle~GeI~l~~~~~~~~~~~~~~~~~~~~l~~~----~~~~-~aV~rl~w~p~~~~~~~~~~~ 744 (764)
T KOG1063|consen 670 VAYLPVDHNEKGDVVAVGLEKGEIVLWRRKREHRQVTVGTFNLDTRLCAT----IGPD-SAVNRLLWRPTCSDDWVEDKE 744 (764)
T ss_pred EEeeccccccccceEEEEecccEEEEEecccccccccceeeeeccccccc----cChH-HhhheeEeccccccccccccc
Confidence 99886 244899999999999999763221100000 01111111 1333 679999999642 22
Q ss_pred ceEEEEEcCCccEEEEEEe
Q 000602 652 QTEIRSTGGDGCICYLEYD 670 (1398)
Q Consensus 652 ~~~L~S~g~DG~i~iw~~~ 670 (1398)
...|+++|.|-++|+++++
T Consensus 745 ~l~la~~g~D~~vri~nv~ 763 (764)
T KOG1063|consen 745 WLNLAVGGDDESVRIFNVD 763 (764)
T ss_pred eeEEeeecccceeEEeecc
Confidence 3568999999999999864
|
|
| >KOG1408 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6e-26 Score=260.46 Aligned_cols=612 Identities=14% Similarity=0.142 Sum_probs=363.1
Q ss_pred eEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE--CCCeEEEEEcCC
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISN 166 (1398)
Q Consensus 89 ~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs--~Dg~V~vWd~~~ 166 (1398)
.++|.-.+..|.+|+.+. .+..+-+..|..++++++|++ +|+++|+|- ....++||++..
T Consensus 50 gl~aYpAGCvVVlfn~~~---------------~tQ~hlvnssRk~~t~vAfS~---~GryvatGEcG~~pa~kVw~la~ 111 (1080)
T KOG1408|consen 50 GLCAYPAGCVVVLFNVDS---------------CTQSHLVNSSRKPLTCVAFSQ---NGRYVATGECGRTPASKVWSLAF 111 (1080)
T ss_pred cceeeccCcEEEEEcccc---------------cchhheecccCcceeEEEEcC---CCcEEEecccCCCccceeeeecc
Confidence 466666788999999874 334445556778999999999 999999984 567899999998
Q ss_pred CeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC--CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY--NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 167 ~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d--g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
...+.++..|.. .+.+++| +|.+.+|++.+.. -.|.+||++-
T Consensus 112 h~vVAEfvdHKY-~vtcvaF---sp~~kyvvSVGsQHDMIVnv~dWr~-------------------------------- 155 (1080)
T KOG1408|consen 112 HGVVAEFVDHKY-NVTCVAF---SPGNKYVVSVGSQHDMIVNVNDWRV-------------------------------- 155 (1080)
T ss_pred ccchhhhhhccc-cceeeee---cCCCcEEEeeccccceEEEhhhhhh--------------------------------
Confidence 877777766543 4556666 8889999986644 3566788761
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-------
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------- 317 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s------- 317 (1398)
.. ...-..-...|..++|+.||.|+++++. +.|++|.+..++. ..+++ .+.+...-.-.+.+.
T Consensus 156 -N~-~~asnkiss~Vsav~fsEdgSYfvT~gn-rHvk~wyl~~~~K-ykdpi------Pl~gRs~~lg~lr~n~f~avaC 225 (1080)
T KOG1408|consen 156 -NS-SGASNKISSVVSAVAFSEDGSYFVTSGN-RHVKLWYLQIQSK-YKDPI------PLPGRSYFLGNLRFNEFLAVAC 225 (1080)
T ss_pred -cc-cccccccceeEEEEEEccCCceeeeeee-eeEEEEEeecccc-ccCCc------cccchhhhccccccchhhhhhh
Confidence 10 1111123567899999999999999764 6999999988763 11111 222222211112211
Q ss_pred --C----CEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCC-CcccccC-CC
Q 000602 318 --D----SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLES-HP 389 (1398)
Q Consensus 318 --~----~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~-~l~~l~~-~~ 389 (1398)
+ ..++ .+..|.+.-|. +.+.+.++-........||.++ .++|++|+.+|.|++|+...- .+.+++. |.
T Consensus 226 g~gicAestfa-it~qGhLvEFS-sRRLLDKWVqcRTTnAnCIcVs--~r~I~cgCa~g~vrlFnp~tL~y~~Tlpr~ha 301 (1080)
T KOG1408|consen 226 GVGICAESTFA-ITAQGHLVEFS-SRRLLDKWVQCRTTNANCICVS--SRLIACGCAKGMVRLFNPETLDYAGTLPRSHA 301 (1080)
T ss_pred cCcccccceEE-Eecccceeeec-hhhhhhhhhhhhccccceeeee--cceEEEeeccceeeecCcchhhhccccccccc
Confidence 0 1111 11223222222 1122211111111134567665 679999999999999988431 1222221 11
Q ss_pred ccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC-eEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEE
Q 000602 390 EAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPII 468 (1398)
Q Consensus 390 ~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg-~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~ 468 (1398)
... +.. .+..++ ......-.+.....-++.|.+.. .+.+.-++-.+|.|++.+.+...-...+ ..+..-|+
T Consensus 302 lg~----d~a--~~~q~~-~~~s~~~~a~fPD~IA~~Fdet~~klscVYndhSlYvWDvrD~~kvgk~~s~-lyHS~ciW 373 (1080)
T KOG1408|consen 302 LGS----DTA--NLSQPE-PKNSESSPAIFPDAIACQFDETTDKLSCVYNDHSLYVWDVRDVNKVGKCSSM-LYHSACIW 373 (1080)
T ss_pred ccc----chh--hccccc-ccccccCcccCCceeEEEecCCCceEEEEEcCceEEEEeccccccccceeee-eeccceee
Confidence 000 000 000000 00000111111223456677655 4455567888998888776543311111 22344555
Q ss_pred EEeccCCCC---CCcCCCCcEEEEEeCCCCEEEEEEcCCcccccee----------ee------------------eeee
Q 000602 469 CMDLLSNEP---KYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLS----------FT------------------FTWS 517 (1398)
Q Consensus 469 ~l~~~~~~~---~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~----------~~------------------~~~~ 517 (1398)
.++..+... ....-....+.+++.|++|++|++..+....... .. ....
T Consensus 374 ~Ve~~p~nv~~~~~aclp~~cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~ 453 (1080)
T KOG1408|consen 374 DVENLPCNVHSPTAACLPRGCFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALV 453 (1080)
T ss_pred eeccccccccCcccccCCccceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccch
Confidence 555544220 0011123457899999999999997632111100 00 0000
Q ss_pred cCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeec---CCCE
Q 000602 518 AGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF---EDEV 594 (1398)
Q Consensus 518 ~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Sp---dg~l 594 (1398)
..-+.+...-.++.||++++|++|..-|.++++++..... ..+...|..+|.||.||. ..++
T Consensus 454 s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~---------------~~~~eAHesEilcLeyS~p~~~~kL 518 (1080)
T KOG1408|consen 454 STCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEY---------------TCFMEAHESEILCLEYSFPVLTNKL 518 (1080)
T ss_pred hhcCcccceEEEEECCCcceecccCccCceEEEEehhhhh---------------hhheecccceeEEEeecCchhhhHh
Confidence 0000111111257899999999999999999999875321 112347999999999994 3689
Q ss_pred EEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCCc
Q 000602 595 LFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRE 674 (1398)
Q Consensus 595 LatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~~ 674 (1398)
||+|++|.-|.|||+..+ +.+..++. .|. ..||+|.|...+-+ ..++++|.|..|.+=.......
T Consensus 519 LASasrdRlIHV~Dv~rn------------y~l~qtld-~HS-ssITsvKFa~~gln-~~MiscGADksimFr~~qk~~~ 583 (1080)
T KOG1408|consen 519 LASASRDRLIHVYDVKRN------------YDLVQTLD-GHS-SSITSVKFACNGLN-RKMISCGADKSIMFRVNQKASS 583 (1080)
T ss_pred hhhccCCceEEEEecccc------------cchhhhhc-ccc-cceeEEEEeecCCc-eEEEeccCchhhheehhccccC
Confidence 999999999999999874 34455444 344 78999999964333 7899999999876544333222
Q ss_pred ceeeeeeeeeeeeeeeEeEecCCCccCcccceEEeeeccccEEEEeCccceEEEEeeccCcccccccccCCCCCCceEEE
Q 000602 675 SLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFA 754 (1398)
Q Consensus 675 ~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~ 754 (1398)
-..|......-..+.+.....+ +...+++++-.++.+.|+|..+..
T Consensus 584 g~~f~r~t~t~~ktTlYDm~Vd-----p~~k~v~t~cQDrnirif~i~sgK----------------------------- 629 (1080)
T KOG1408|consen 584 GRLFPRHTQTLSKTTLYDMAVD-----PTSKLVVTVCQDRNIRIFDIESGK----------------------------- 629 (1080)
T ss_pred ceeccccccccccceEEEeeeC-----CCcceEEEEecccceEEEeccccc-----------------------------
Confidence 2223222222223333333322 123355666666666666654432
Q ss_pred EEeccEEEEEEEeeccCcCCccccccccCCC-cceeeEEEeecccccccccccccCCCCCeEEEEeecCCeEEEEEecCC
Q 000602 755 YVKDEVIHIHRHWISNGERKMFPKNLHMQFH-GREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPG 833 (1398)
Q Consensus 755 ~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~H-greI~sv~~~~~~~~~~~~~~~~~~~~~~~laTGseD~tIrl~~~~~~ 833 (1398)
+.+.| ++. +.| |.-|+- ..- ..+-||||.+.|.|+.+++|..
T Consensus 630 -----q~k~F------------Kgs---~~~eG~lIKv-~lD---------------PSgiY~atScsdktl~~~Df~s- 672 (1080)
T KOG1408|consen 630 -----QVKSF------------KGS---RDHEGDLIKV-ILD---------------PSGIYLATSCSDKTLCFVDFVS- 672 (1080)
T ss_pred -----eeeee------------ccc---ccCCCceEEE-EEC---------------CCccEEEEeecCCceEEEEecc-
Confidence 11111 111 244 444553 222 1267999999999999999976
Q ss_pred CcccccccccccccCccceeeeeeeeeeccccccccCCcccccccccccccCCCCEEEEEecccceEEEEEEEecC
Q 000602 834 FENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHRG 909 (1398)
Q Consensus 834 ~~~~~~~~~l~~H~~gsav~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~vW~~~~~~ 909 (1398)
......+.+|. -+|+.+.|. .|-..|+|+++|+.|.||++-.+.
T Consensus 673 ---gEcvA~m~GHs--E~VTG~kF~---------------------------nDCkHlISvsgDgCIFvW~lp~~m 716 (1080)
T KOG1408|consen 673 ---GECVAQMTGHS--EAVTGVKFL---------------------------NDCKHLISVSGDGCIFVWKLPLTM 716 (1080)
T ss_pred ---chhhhhhcCcc--hheeeeeec---------------------------ccchhheeecCCceEEEEECchhH
Confidence 34677889999 999999995 134679999999999999987654
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2e-29 Score=268.09 Aligned_cols=259 Identities=18% Similarity=0.328 Sum_probs=219.5
Q ss_pred CCCCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
..|+||+|||..+.+ |+|.|.|+.|. .+++++|+ |.+|+|||+.+|+++.++-.|.. .|.++.
T Consensus 214 lrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd--------~rviisGSSDsTvrvWDv~tge~l~tlihHce-aVLhlr 284 (499)
T KOG0281|consen 214 LRDNTIKIWDKNSLECLKILTGHTGSVLCLQYD--------ERVIVSGSSDSTVRVWDVNTGEPLNTLIHHCE-AVLHLR 284 (499)
T ss_pred cccCceEEeccccHHHHHhhhcCCCcEEeeecc--------ceEEEecCCCceEEEEeccCCchhhHHhhhcc-eeEEEE
Confidence 368999999988866 99999999998 57999998 89999999999999999887665 799999
Q ss_pred EeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEE
Q 000602 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Lat 152 (1398)
|+ . | .++.++.|+++++||+..+. ...+.+.+.||...|+.+.|+. +++++
T Consensus 285 f~-------n-g----~mvtcSkDrsiaVWdm~sps------------~it~rrVLvGHrAaVNvVdfd~-----kyIVs 335 (499)
T KOG0281|consen 285 FS-------N-G----YMVTCSKDRSIAVWDMASPT------------DITLRRVLVGHRAAVNVVDFDD-----KYIVS 335 (499)
T ss_pred Ee-------C-C----EEEEecCCceeEEEeccCch------------HHHHHHHHhhhhhheeeecccc-----ceEEE
Confidence 98 3 2 56666669999999998643 3567788999999999999954 79999
Q ss_pred EECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000602 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1398)
Q Consensus 153 gs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1398)
++.|.+|++|+..+++.+.++.+|.+.+. ++.+ .+.++++|+.|.+|++||+.
T Consensus 336 ASgDRTikvW~~st~efvRtl~gHkRGIA-ClQY-----r~rlvVSGSSDntIRlwdi~--------------------- 388 (499)
T KOG0281|consen 336 ASGDRTIKVWSTSTCEFVRTLNGHKRGIA-CLQY-----RDRLVVSGSSDNTIRLWDIE--------------------- 388 (499)
T ss_pred ecCCceEEEEeccceeeehhhhcccccce-ehhc-----cCeEEEecCCCceEEEEecc---------------------
Confidence 99999999999999999999999887644 4433 68899999999999999998
Q ss_pred CcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEE
Q 000602 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312 (1398)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~ 312 (1398)
.+.++..+.||+.-|.++.| |.+.++||+.||+|++||+.....+ ......+-...+..|+++|.
T Consensus 389 ------------~G~cLRvLeGHEeLvRciRF--d~krIVSGaYDGkikvWdl~aaldp-ra~~~~~Cl~~lv~hsgRVF 453 (499)
T KOG0281|consen 389 ------------CGACLRVLEGHEELVRCIRF--DNKRIVSGAYDGKIKVWDLQAALDP-RAPASTLCLRTLVEHSGRVF 453 (499)
T ss_pred ------------ccHHHHHHhchHHhhhheee--cCceeeeccccceEEEEecccccCC-cccccchHHHhhhhccceeE
Confidence 78889999999999999999 4678999999999999999876542 11011111126678999999
Q ss_pred EEEEcCCEEEEEeCCCcEEEEcC-CCce
Q 000602 313 DCCLTDSFIITAGEDCTCRVWGS-DGKQ 339 (1398)
Q Consensus 313 ~l~~s~~~l~sgs~Dg~i~vWd~-~g~~ 339 (1398)
.+.|..-.+++++.|.+|.|||. ++.+
T Consensus 454 rLQFD~fqIvsssHddtILiWdFl~~~~ 481 (499)
T KOG0281|consen 454 RLQFDEFQIISSSHDDTILIWDFLNGPP 481 (499)
T ss_pred EEeecceEEEeccCCCeEEEEEcCCCCc
Confidence 99999999999999999999999 5543
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-28 Score=289.08 Aligned_cols=267 Identities=17% Similarity=0.306 Sum_probs=223.4
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcC
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd 96 (1398)
..++|..|+ +| .++||+|. |..|++|.+...+ +.+++.. .+-.. ++- -+.|
T Consensus 379 ~~v~ca~fS--dd----ssmlA~Gf~dS~i~~~Sl~p~k-l~~lk~~--------~~l~~-----~d~--------~sad 430 (707)
T KOG0263|consen 379 QGVTCAEFS--DD----SSMLACGFVDSSVRVWSLTPKK-LKKLKDA--------SDLSN-----IDT--------ESAD 430 (707)
T ss_pred CcceeEeec--CC----cchhhccccccEEEEEecchhh-hccccch--------hhhcc-----ccc--------cccc
Confidence 458999999 88 78899988 7999999987543 2333321 11100 110 0112
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccC
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~ 176 (1398)
-.+.+.|-.. ....+.+.||.++|..+.|+| +.++|++++.|++||+|.+.+...+...++|
T Consensus 431 ~~~~~~D~~~---------------~~~~~~L~GH~GPVyg~sFsP---d~rfLlScSED~svRLWsl~t~s~~V~y~GH 492 (707)
T KOG0263|consen 431 VDVDMLDDDS---------------SGTSRTLYGHSGPVYGCSFSP---DRRFLLSCSEDSSVRLWSLDTWSCLVIYKGH 492 (707)
T ss_pred hhhhhccccC---------------CceeEEeecCCCceeeeeecc---cccceeeccCCcceeeeecccceeEEEecCC
Confidence 2233333332 234456889999999999999 9999999999999999999999998888855
Q ss_pred CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc
Q 000602 177 ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1398)
Q Consensus 177 ~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1398)
. .+++.+.| +|.|-++|+++.|++-++|... ...+++.+.||-
T Consensus 493 ~-~PVwdV~F---~P~GyYFatas~D~tArLWs~d---------------------------------~~~PlRifaghl 535 (707)
T KOG0263|consen 493 L-APVWDVQF---APRGYYFATASHDQTARLWSTD---------------------------------HNKPLRIFAGHL 535 (707)
T ss_pred C-cceeeEEe---cCCceEEEecCCCceeeeeecc---------------------------------cCCchhhhcccc
Confidence 4 56888887 7889999999999999999988 567888899999
Q ss_pred CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEc
Q 000602 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 257 ~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd 334 (1398)
+.|.|++|+|+..|+++||.|++||+||+.++.. + +.+.||.++|.+++|+ |.+|++|++|+.|.+||
T Consensus 536 sDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~~-----V-----RiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWD 605 (707)
T KOG0263|consen 536 SDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGNS-----V-----RIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWD 605 (707)
T ss_pred cccceEEECCcccccccCCCCceEEEEEcCCCcE-----E-----EEecCCCCceEEEEEcCCCceEeecccCCcEEEEE
Confidence 9999999999999999999999999999999876 3 3889999999999999 69999999999999999
Q ss_pred C-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 335 S-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 335 ~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+ .++.+..+.+|.+ .|.++.|+.+|..||+||.|.+|++||+.
T Consensus 606 l~~~~~v~~l~~Ht~-ti~SlsFS~dg~vLasgg~DnsV~lWD~~ 649 (707)
T KOG0263|consen 606 LANGSLVKQLKGHTG-TIYSLSFSRDGNVLASGGADNSVRLWDLT 649 (707)
T ss_pred cCCCcchhhhhcccC-ceeEEEEecCCCEEEecCCCCeEEEEEch
Confidence 9 8899999999988 79999999999999999999999999994
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.1e-28 Score=257.96 Aligned_cols=280 Identities=19% Similarity=0.328 Sum_probs=241.9
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.+.|.||++. |. ..++++|+ |++|+|||+++|++..++.+|-. .|.++++| +-. ++++.++
T Consensus 150 HlgWVr~vavd--P~----n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vavS-------~rH---pYlFs~g 212 (460)
T KOG0285|consen 150 HLGWVRSVAVD--PG----NEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAVS-------KRH---PYLFSAG 212 (460)
T ss_pred ccceEEEEeeC--CC----ceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeeec-------ccC---ceEEEec
Confidence 89999999999 87 89999999 89999999999999999999876 79999999 443 3666666
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.|+.|+.||++. -+.++.+.||-..|.|++.+| .-+.|+||+.|.+++|||+++...+..+.
T Consensus 213 edk~VKCwDLe~---------------nkvIR~YhGHlS~V~~L~lhP---Tldvl~t~grDst~RvWDiRtr~~V~~l~ 274 (460)
T KOG0285|consen 213 EDKQVKCWDLEY---------------NKVIRHYHGHLSGVYCLDLHP---TLDVLVTGGRDSTIRVWDIRTRASVHVLS 274 (460)
T ss_pred CCCeeEEEechh---------------hhhHHHhccccceeEEEeccc---cceeEEecCCcceEEEeeecccceEEEec
Confidence 699999999986 467788899999999999999 88999999999999999999999999998
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1398)
+|... +.++.+ .+-...+++|+.|++|++||+. .++...++..
T Consensus 275 GH~~~-V~~V~~---~~~dpqvit~S~D~tvrlWDl~---------------------------------agkt~~tlt~ 317 (460)
T KOG0285|consen 275 GHTNP-VASVMC---QPTDPQVITGSHDSTVRLWDLR---------------------------------AGKTMITLTH 317 (460)
T ss_pred CCCCc-ceeEEe---ecCCCceEEecCCceEEEeeec---------------------------------cCceeEeeec
Confidence 87654 555555 3445689999999999999999 6777888999
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vW 333 (1398)
|...|.+++.+|....+||++.| .|+-|++..+.. +. .+.+|++.|.+++.. +.++++|+++|.+..|
T Consensus 318 hkksvral~lhP~e~~fASas~d-nik~w~~p~g~f-----~~-----nlsgh~~iintl~~nsD~v~~~G~dng~~~fw 386 (460)
T KOG0285|consen 318 HKKSVRALCLHPKENLFASASPD-NIKQWKLPEGEF-----LQ-----NLSGHNAIINTLSVNSDGVLVSGGDNGSIMFW 386 (460)
T ss_pred ccceeeEEecCCchhhhhccCCc-cceeccCCccch-----hh-----ccccccceeeeeeeccCceEEEcCCceEEEEE
Confidence 99999999999999999999998 789999998766 33 688999999999987 7999999999999999
Q ss_pred cC-CCceEEEEec-------ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 334 GS-DGKQLKMIKE-------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 334 d~-~g~~l~~l~~-------h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
|. +|...+.+.. ....+|.+.+|...|..|+||..|.+|++|.-.
T Consensus 387 dwksg~nyQ~~~t~vqpGSl~sEagI~as~fDktg~rlit~eadKtIk~~keD 439 (460)
T KOG0285|consen 387 DWKSGHNYQRGQTIVQPGSLESEAGIFASCFDKTGSRLITGEADKTIKMYKED 439 (460)
T ss_pred ecCcCcccccccccccCCccccccceeEEeecccCceEEeccCCcceEEEecc
Confidence 99 6544333211 122369999999999999999999999999873
|
|
| >KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9.2e-28 Score=257.14 Aligned_cols=298 Identities=18% Similarity=0.299 Sum_probs=244.6
Q ss_pred CcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcE
Q 000602 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1398)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~ 195 (1398)
|+-+...++.+.+.+|.+||.|+++.| ....+++|+.|++++|||+.+|+...++.++.. .+..+++ ++...+
T Consensus 135 PeWHapwKl~rVi~gHlgWVr~vavdP---~n~wf~tgs~DrtikIwDlatg~LkltltGhi~-~vr~vav---S~rHpY 207 (460)
T KOG0285|consen 135 PEWHAPWKLYRVISGHLGWVRSVAVDP---GNEWFATGSADRTIKIWDLATGQLKLTLTGHIE-TVRGVAV---SKRHPY 207 (460)
T ss_pred ccccCcceehhhhhhccceEEEEeeCC---CceeEEecCCCceeEEEEcccCeEEEeecchhh-eeeeeee---cccCce
Confidence 344556889999999999999999999 899999999999999999999999999887654 3555666 667789
Q ss_pred EEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE
Q 000602 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1398)
Q Consensus 196 lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s 275 (1398)
+++++.|++|+.||+. ..+.++.+.||-..|.+++.+|.-..|+||+
T Consensus 208 lFs~gedk~VKCwDLe---------------------------------~nkvIR~YhGHlS~V~~L~lhPTldvl~t~g 254 (460)
T KOG0285|consen 208 LFSAGEDKQVKCWDLE---------------------------------YNKVIRHYHGHLSGVYCLDLHPTLDVLVTGG 254 (460)
T ss_pred EEEecCCCeeEEEech---------------------------------hhhhHHHhccccceeEEEeccccceeEEecC
Confidence 9999999999999999 5677888999999999999999999999999
Q ss_pred CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEE
Q 000602 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 276 ~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~ 352 (1398)
.|.++|+||+++... + ..+.||...|.++.+. +..++||+.|++|++||+ .|+...++..|.. .|.
T Consensus 255 rDst~RvWDiRtr~~-----V-----~~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agkt~~tlt~hkk-svr 323 (460)
T KOG0285|consen 255 RDSTIRVWDIRTRAS-----V-----HVLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGKTMITLTHHKK-SVR 323 (460)
T ss_pred CcceEEEeeecccce-----E-----EEecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCceeEeeecccc-eee
Confidence 999999999999765 3 3889999999999998 689999999999999999 8999999998988 699
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC
Q 000602 353 RCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1398)
Q Consensus 353 sl~~spdg~~latgg~Dg~I~iwdl-~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg 431 (1398)
+++.+|....+|+++.| .|+-|++ .+..++.+. +|...|.+++...|+
T Consensus 324 al~lhP~e~~fASas~d-nik~w~~p~g~f~~nls------------------------------gh~~iintl~~nsD~ 372 (460)
T KOG0285|consen 324 ALCLHPKENLFASASPD-NIKQWKLPEGEFLQNLS------------------------------GHNAIINTLSVNSDG 372 (460)
T ss_pred EEecCCchhhhhccCCc-cceeccCCccchhhccc------------------------------cccceeeeeeeccCc
Confidence 99999999999999988 7899998 444444333 355678899999999
Q ss_pred eEEEEEcCCcEEEEEeecCCCceeE-EEEe-ec--CCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcC
Q 000602 432 TLYIATNHGYLYHTKLCDMDSVNWN-KILQ-VS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1398)
Q Consensus 432 ~llv~t~~g~i~~~~l~~~~~~~w~-~i~~-~~--~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~ 503 (1398)
.+++++.+|.+.+|+..+....+.. .+.+ +. ....|++..+.. .+..|++|..|.+|++|.-+.
T Consensus 373 v~~~G~dng~~~fwdwksg~nyQ~~~t~vqpGSl~sEagI~as~fDk--------tg~rlit~eadKtIk~~keDe 440 (460)
T KOG0285|consen 373 VLVSGGDNGSIMFWDWKSGHNYQRGQTIVQPGSLESEAGIFASCFDK--------TGSRLITGEADKTIKMYKEDE 440 (460)
T ss_pred eEEEcCCceEEEEEecCcCcccccccccccCCccccccceeEEeecc--------cCceEEeccCCcceEEEeccc
Confidence 9999999999887765443322211 1111 11 133445544432 356799999999999998654
|
|
| >KOG1539 consensus WD repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.7e-24 Score=254.82 Aligned_cols=466 Identities=15% Similarity=0.188 Sum_probs=299.9
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCC
Q 000602 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1398)
Q Consensus 36 ~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~ 115 (1398)
-++.++-|....+||++.-.++..-..+. ..|++++-. .+ ++-++.++.|.+|....
T Consensus 48 ~~vtt~vgksfqvYd~~kl~ll~vs~~lp-~~I~alas~-------~~------~vy~A~g~~i~~~~rgk--------- 104 (910)
T KOG1539|consen 48 FYVTTCVGKSFQVYDVNKLNLLFVSKPLP-DKITALASD-------KD------YVYVASGNKIYAYARGK--------- 104 (910)
T ss_pred EEEEEecCceEEEEeccceEEEEecCCCC-CceEEEEec-------Cc------eEEEecCcEEEEEEccc---------
Confidence 34555559999999998877766554333 479999865 32 33334456788776531
Q ss_pred CcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC-eEE---EEEccCCcceEEEEEeecCCC
Q 000602 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SII---LEVHSPERCLLYSMKLWGDNL 191 (1398)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~-~~~---~~l~~~~~~~~~s~~~~~~s~ 191 (1398)
...+.+.+|...|.-+.. =|..+..+..++.+.||+...+ +.. ..+...+...+.++. |+ +-
T Consensus 105 -------~i~~~~~~~~a~v~~l~~-----fGe~lia~d~~~~l~vw~~s~~~~e~~l~~~~~~~~~~~Ital~-HP-~T 170 (910)
T KOG1539|consen 105 -------HIRHTTLLHGAKVHLLLP-----FGEHLIAVDISNILFVWKTSSIQEELYLQSTFLKVEGDFITALL-HP-ST 170 (910)
T ss_pred -------eEEEEeccccceEEEEee-----ecceEEEEEccCcEEEEEeccccccccccceeeeccCCceeeEe-cc-hh
Confidence 234556677766665543 4578888999999999999874 111 111111222233322 22 22
Q ss_pred CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEE
Q 000602 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1398)
Q Consensus 192 d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~L 271 (1398)
-=+.|+.|+..|.+++|+++ +++.+.++.++...|+++.=+|--..+
T Consensus 171 YLNKIvvGs~~G~lql~Nvr---------------------------------t~K~v~~f~~~~s~IT~ieqsPaLDVV 217 (910)
T KOG1539|consen 171 YLNKIVVGSSQGRLQLWNVR---------------------------------TGKVVYTFQEFFSRITAIEQSPALDVV 217 (910)
T ss_pred heeeEEEeecCCcEEEEEec---------------------------------cCcEEEEecccccceeEeccCCcceEE
Confidence 23578999999999999999 789999999999999999999988899
Q ss_pred EEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecC-CccEEEEEEc--C-CEEEEEeCCCcEEEEcCCCceE-EEE-ec
Q 000602 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVWDCCLT--D-SFIITAGEDCTCRVWGSDGKQL-KMI-KE 345 (1398)
Q Consensus 272 aS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh-~~~V~~l~~s--~-~~l~sgs~Dg~i~vWd~~g~~l-~~l-~~ 345 (1398)
|.|..+|+|.|++++.++. + .-+.| .++|++++|. | ..+++|+..|.+.+||++++.+ ..+ ..
T Consensus 218 aiG~~~G~ViifNlK~dki-----l------~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v~~na 286 (910)
T KOG1539|consen 218 AIGLENGTVIIFNLKFDKI-----L------MSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINVTRNA 286 (910)
T ss_pred EEeccCceEEEEEcccCcE-----E------EEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeeeeecc
Confidence 9999999999999999876 2 33445 5999999997 3 6889999999999999965544 344 46
Q ss_pred ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEE
Q 000602 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCL 425 (1398)
Q Consensus 346 h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~l 425 (1398)
|.+ +|....|.|....++|++.|+.+++|=.+.. ...+..++.-.+|+.+..|+
T Consensus 287 h~~-sv~~~~fl~~epVl~ta~~DnSlk~~vfD~~-------------------------dg~pR~LR~R~GHs~Pp~~i 340 (910)
T KOG1539|consen 287 HYG-SVTGATFLPGEPVLVTAGADNSLKVWVFDSG-------------------------DGVPRLLRSRGGHSAPPSCI 340 (910)
T ss_pred ccC-CcccceecCCCceEeeccCCCceeEEEeeCC-------------------------CCcchheeeccCCCCCchhe
Confidence 767 6999999999999999999999999976310 01122333445788899999
Q ss_pred EEe-cCCeEEEEEcC-CcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcC
Q 000602 426 HLT-SEDTLYIATNH-GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1398)
Q Consensus 426 afs-~dg~llv~t~~-g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~ 503 (1398)
+|. .+|.++..... +.+..+.+...... +.+-+.+ .-...+.+.+.....
T Consensus 341 rfy~~~g~~ilsa~~Drt~r~fs~~~e~~~--~~l~~~~--------------------------~~~~~kk~~~~~~~~ 392 (910)
T KOG1539|consen 341 RFYGSQGHFILSAKQDRTLRSFSVISESQS--QELGQLH--------------------------NKKRAKKVNVFSTEK 392 (910)
T ss_pred eeeccCcEEEEecccCcchhhhhhhHHHHh--Hhhcccc--------------------------cccccccccccchhh
Confidence 998 56666665543 33322211110000 0000000 000001121211111
Q ss_pred CccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcE
Q 000602 504 DVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARI 583 (1398)
Q Consensus 504 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~I 583 (1398)
-+..+...+.. ....+. .....+++.-.+..++.|+...... ....+...-.......+
T Consensus 393 ~k~p~i~~fa~--~~~RE~----------~W~Nv~~~h~~~~~~~tW~~~n~~~---------G~~~L~~~~~~~~~~~~ 451 (910)
T KOG1539|consen 393 LKLPPIVEFAF--ENAREK----------EWDNVITAHKGKRSAYTWNFRNKTS---------GRHVLDPKRFKKDDINA 451 (910)
T ss_pred hcCCcceeeec--ccchhh----------hhcceeEEecCcceEEEEeccCccc---------ccEEecCccccccCcce
Confidence 11111101000 000000 1122344445567788999876421 11122221112356779
Q ss_pred EEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceec-cccCcccEEEEEEEeeCCCceEEEEEcCCc
Q 000602 584 MCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFK-GAHGISTVSTLSVAKLRSNQTEIRSTGGDG 662 (1398)
Q Consensus 584 tsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~-g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG 662 (1398)
++++.++.|++.+.|+..|+|-+|++.++.. ...... .+|+ ..|+.|+.. .-...++|++.||
T Consensus 452 ~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~------------r~sf~~~~ah~-~~V~gla~D---~~n~~~vsa~~~G 515 (910)
T KOG1539|consen 452 TAVCVSFCGNFVFIGYSKGTIDRFNMQSGIH------------RKSFGDSPAHK-GEVTGLAVD---GTNRLLVSAGADG 515 (910)
T ss_pred EEEEEeccCceEEEeccCCeEEEEEcccCee------------ecccccCcccc-CceeEEEec---CCCceEEEccCcc
Confidence 9999999999999999999999999998621 111111 2566 789999887 3357899999999
Q ss_pred cEEEEEEecCC
Q 000602 663 CICYLEYDKDR 673 (1398)
Q Consensus 663 ~i~iw~~~~~~ 673 (1398)
.+++|+.....
T Consensus 516 ilkfw~f~~k~ 526 (910)
T KOG1539|consen 516 ILKFWDFKKKV 526 (910)
T ss_pred eEEEEecCCcc
Confidence 99999988754
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.96 E-value=9e-27 Score=251.44 Aligned_cols=294 Identities=15% Similarity=0.155 Sum_probs=246.8
Q ss_pred CCCCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
|+|....+|+..++. |-..|+++.|| .| |.|||+|. +|.|+||...++.....+.. +...|.=+.
T Consensus 83 GgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fs--hd----gtlLATGdmsG~v~v~~~stg~~~~~~~~-e~~dieWl~ 155 (399)
T KOG0296|consen 83 GGDDLAFLWDISTGEFAGELTGHKDSVTCCSFS--HD----GTLLATGDMSGKVLVFKVSTGGEQWKLDQ-EVEDIEWLK 155 (399)
T ss_pred CCCceEEEEEccCCcceeEecCCCCceEEEEEc--cC----ceEEEecCCCccEEEEEcccCceEEEeec-ccCceEEEE
Confidence 578889999999987 88899999999 77 89999999 89999999999988777752 233577788
Q ss_pred EeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEE
Q 000602 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Lat 152 (1398)
|+ |.+ ..++|.+.||.+-+|.+.. ....+.+.||+.++++-+|.| +|+++++
T Consensus 156 WH-------p~a---~illAG~~DGsvWmw~ip~---------------~~~~kv~~Gh~~~ct~G~f~p---dGKr~~t 207 (399)
T KOG0296|consen 156 WH-------PRA---HILLAGSTDGSVWMWQIPS---------------QALCKVMSGHNSPCTCGEFIP---DGKRILT 207 (399)
T ss_pred ec-------ccc---cEEEeecCCCcEEEEECCC---------------cceeeEecCCCCCcccccccC---CCceEEE
Confidence 88 766 2444445599999999975 356778889999999999999 9999999
Q ss_pred EECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000602 153 GCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1398)
Q Consensus 153 gs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1398)
+..||+|++||+.+++++..+...+......+.+ +..+..+.+|..++.+++-+..+
T Consensus 208 gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~---~~~~~~~~~g~~e~~~~~~~~~s-------------------- 264 (399)
T KOG0296|consen 208 GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISL---NLAGSTLTKGNSEGVACGVNNGS-------------------- 264 (399)
T ss_pred EecCceEEEEecCCCceeEEecccccCcCCcccc---ccccceeEeccCCccEEEEcccc--------------------
Confidence 9999999999999999998887555444444444 66788999999999999988773
Q ss_pred CcceeeecccccceeEEEEEe--------CccCCEEEEEEcC---CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeee
Q 000602 233 DFKCFKLQDQQHTAVNLFRLV--------GHEGSIFRIEWSS---CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1398)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~--------gH~~~I~~vafsp---dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~ 301 (1398)
++.+.... +++..+.+|.|.| .-.+.|+|+-||+|.|||+...+.
T Consensus 265 -------------gKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~----------- 320 (399)
T KOG0296|consen 265 -------------GKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL----------- 320 (399)
T ss_pred -------------ceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh-----------
Confidence 33333222 4555566665555 556789999999999999998776
Q ss_pred eEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 302 SVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 302 ~~~~gh~~~V~~l~~s~-~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
+....|...|..+.|.+ .+|++++.||+|+.||. +|+++.++.+|.. +|..++++|+.++++|++.|++.++|+.
T Consensus 321 R~~c~he~~V~~l~w~~t~~l~t~c~~g~v~~wDaRtG~l~~~y~GH~~-~Il~f~ls~~~~~vvT~s~D~~a~VF~v 397 (399)
T KOG0296|consen 321 RHICEHEDGVTKLKWLNTDYLLTACANGKVRQWDARTGQLKFTYTGHQM-GILDFALSPQKRLVVTVSDDNTALVFEV 397 (399)
T ss_pred heeccCCCceEEEEEcCcchheeeccCceEEeeeccccceEEEEecCch-heeEEEEcCCCcEEEEecCCCeEEEEec
Confidence 47788999999999986 89999999999999999 9999999999999 7999999999999999999999999986
|
|
| >KOG0645 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-26 Score=239.44 Aligned_cols=282 Identities=18% Similarity=0.229 Sum_probs=228.8
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC---eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg---~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
|.+.|-.+||+ |. .|.+||+|+ |..|+||+...+ .+...+...+...|..++|+ |.| ++|
T Consensus 13 h~~r~W~~awh--p~---~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAws-------p~g----~~L 76 (312)
T KOG0645|consen 13 HKDRVWSVAWH--PG---KGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWS-------PHG----RYL 76 (312)
T ss_pred CCCcEEEEEec--cC---CceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeec-------CCC----cEE
Confidence 77899999999 74 255889888 799999999853 44444443344479999999 998 688
Q ss_pred EEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe--
Q 000602 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-- 168 (1398)
Q Consensus 92 a~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-- 168 (1398)
|+++ |.++.||.-.... ++++..++||...|.|++|++ +|.+|||++.|++|-||.+..+.
T Consensus 77 a~aSFD~t~~Iw~k~~~e-------------fecv~~lEGHEnEVK~Vaws~---sG~~LATCSRDKSVWiWe~deddEf 140 (312)
T KOG0645|consen 77 ASASFDATVVIWKKEDGE-------------FECVATLEGHENEVKCVAWSA---SGNYLATCSRDKSVWIWEIDEDDEF 140 (312)
T ss_pred EEeeccceEEEeecCCCc-------------eeEEeeeeccccceeEEEEcC---CCCEEEEeeCCCeEEEEEecCCCcE
Confidence 8887 9999999877544 899999999999999999999 99999999999999999997543
Q ss_pred -EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000602 169 -IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1398)
Q Consensus 169 -~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1398)
+...++.|. .-+-.+.| .|...+|++++.|++|++|+-.. .....
T Consensus 141 ec~aVL~~Ht-qDVK~V~W---HPt~dlL~S~SYDnTIk~~~~~~------------------------------dddW~ 186 (312)
T KOG0645|consen 141 ECIAVLQEHT-QDVKHVIW---HPTEDLLFSCSYDNTIKVYRDED------------------------------DDDWE 186 (312)
T ss_pred EEEeeecccc-ccccEEEE---cCCcceeEEeccCCeEEEEeecC------------------------------CCCee
Confidence 344444443 33444555 46678999999999999998761 12577
Q ss_pred EEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCC
Q 000602 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGED 327 (1398)
Q Consensus 248 ~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~D 327 (1398)
+++++.+|+..|.+++|+|.|..|+++++|++++||...+. ...-|...++.++|....|+|++.|
T Consensus 187 c~~tl~g~~~TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~--------------~~~~~sr~~Y~v~W~~~~IaS~ggD 252 (312)
T KOG0645|consen 187 CVQTLDGHENTVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD--------------LSGMHSRALYDVPWDNGVIASGGGD 252 (312)
T ss_pred EEEEecCccceEEEEEecCCCceEEEecCCcceEeeeeccC--------------cchhcccceEeeeecccceEeccCC
Confidence 89999999999999999999999999999999999997642 3345778899999988899999999
Q ss_pred CcEEEEcCCCc---e----E-EEEecccCccEEEEEEcCC-CCEEEEEEcCCcEEEEEcC
Q 000602 328 CTCRVWGSDGK---Q----L-KMIKEHIGRGIWRCLYDSL-SSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 328 g~i~vWd~~g~---~----l-~~l~~h~~~~V~sl~~spd-g~~latgg~Dg~I~iwdl~ 378 (1398)
+.|++|..... + + +.-..|.. .|+++.|+|. .++|++||.||.|++|.+.
T Consensus 253 ~~i~lf~~s~~~d~p~~~l~~~~~~aHe~-dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 253 DAIRLFKESDSPDEPSWNLLAKKEGAHEV-DVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred CEEEEEEecCCCCCchHHHHHhhhccccc-ccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 99999987211 1 1 23345666 5999999995 6799999999999999873
|
|
| >KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.4e-25 Score=257.49 Aligned_cols=320 Identities=16% Similarity=0.256 Sum_probs=258.0
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
..+|.+++|+ |.- +.+|++--.|.|++||... ..++..+.+|.++|..++|+|
T Consensus 9 SsRvKglsFH-------P~r---PwILtslHsG~IQlWDYRM---------------~tli~rFdeHdGpVRgv~FH~-- 61 (1202)
T KOG0292|consen 9 SSRVKGLSFH-------PKR---PWILTSLHSGVIQLWDYRM---------------GTLIDRFDEHDGPVRGVDFHP-- 61 (1202)
T ss_pred cccccceecC-------CCC---CEEEEeecCceeeeehhhh---------------hhHHhhhhccCCccceeeecC--
Confidence 4589999999 653 3667667799999999985 678889999999999999999
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCC
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
.+.++++|+.|..|+||+..+.+++.++.+|.. .+.++.||. .-.+|++++.|.+|+||+++
T Consensus 62 -~qplFVSGGDDykIkVWnYk~rrclftL~GHlD-YVRt~~FHh---eyPWIlSASDDQTIrIWNwq------------- 123 (1202)
T KOG0292|consen 62 -TQPLFVSGGDDYKIKVWNYKTRRCLFTLLGHLD-YVRTVFFHH---EYPWILSASDDQTIRIWNWQ------------- 123 (1202)
T ss_pred -CCCeEEecCCccEEEEEecccceehhhhccccc-eeEEeeccC---CCceEEEccCCCeEEEEecc-------------
Confidence 999999999999999999999999999988765 356677754 45699999999999999999
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC---C--------
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD---S-------- 293 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~---~-------- 293 (1398)
+.+++..++||...|.|..|+|....++|+|-|.+||+||+..-+... +
T Consensus 124 --------------------sr~~iavltGHnHYVMcAqFhptEDlIVSaSLDQTVRVWDisGLRkk~~~pg~~e~~~~~ 183 (1202)
T KOG0292|consen 124 --------------------SRKCIAVLTGHNHYVMCAQFHPTEDLIVSASLDQTVRVWDISGLRKKNKAPGSLEDQMRG 183 (1202)
T ss_pred --------------------CCceEEEEecCceEEEeeccCCccceEEEecccceEEEEeecchhccCCCCCCchhhhhc
Confidence 788999999999999999999999999999999999999998644320 0
Q ss_pred -----C----CceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcCCCc---eEEEEecccCccEEEEEEcCC
Q 000602 294 -----D----SIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSDGK---QLKMIKEHIGRGIWRCLYDSL 359 (1398)
Q Consensus 294 -----~----~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~~g~---~l~~l~~h~~~~V~sl~~spd 359 (1398)
+ .--.++ ..+.||...|.-++|+| .+|++|+.|..|++|.++.. .+.+.++|.+ +|.++.|+|.
T Consensus 184 ~~~~~dLfg~~DaVVK-~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~n-nVssvlfhp~ 261 (1202)
T KOG0292|consen 184 QQGNSDLFGQTDAVVK-HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHYN-NVSSVLFHPH 261 (1202)
T ss_pred cccchhhcCCcCeeee-eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhcccC-CcceEEecCc
Confidence 0 001123 47889999999999998 89999999999999999332 4667899999 7999999999
Q ss_pred CCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc
Q 000602 360 SSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1398)
Q Consensus 360 g~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~ 438 (1398)
...|++.|.|++||+||++. ..++++. ...+....++..|...+++++.
T Consensus 262 q~lIlSnsEDksirVwDm~kRt~v~tfr------------------------------rendRFW~laahP~lNLfAAgH 311 (1202)
T KOG0292|consen 262 QDLILSNSEDKSIRVWDMTKRTSVQTFR------------------------------RENDRFWILAAHPELNLFAAGH 311 (1202)
T ss_pred cceeEecCCCccEEEEecccccceeeee------------------------------ccCCeEEEEEecCCcceeeeec
Confidence 99999999999999999953 3333332 1224677888899999999998
Q ss_pred CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCcccc
Q 000602 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1398)
Q Consensus 439 ~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~ 508 (1398)
++.+..+++ ....+.+++. ++.+.... |..|+-+|+.+.+..+
T Consensus 312 DsGm~VFkl--------------eRErpa~~v~------------~n~LfYvk-d~~i~~~d~~t~~d~~ 354 (1202)
T KOG0292|consen 312 DSGMIVFKL--------------ERERPAYAVN------------GNGLFYVK-DRFIRSYDLRTQKDTA 354 (1202)
T ss_pred CCceEEEEE--------------cccCceEEEc------------CCEEEEEc-cceEEeeeccccccce
Confidence 887765443 2244555542 22334333 7889999998755443
|
|
| >KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.95 E-value=2.4e-26 Score=254.95 Aligned_cols=291 Identities=19% Similarity=0.319 Sum_probs=250.8
Q ss_pred CCCCcEEEEeCCc------Ce---------------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEE
Q 000602 1 MGKKDLSEWRLDV------GQ---------------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIR 58 (1398)
Q Consensus 1 ~~D~tv~iWdl~~------~~---------------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~ 58 (1398)
+.|.+.|+|++.. .+ -..+||+|+|+ .+ |.+||+|. +|.++||+. +|.++.
T Consensus 198 ~~~s~ari~~l~e~~~~~~~q~~lrh~~~~~~~s~~~nkdVT~L~Wn--~~----G~~LatG~~~G~~riw~~-~G~l~~ 270 (524)
T KOG0273|consen 198 SGDSTARIWNLLENSNIGSTQLVLRHCIREGGKSVPSNKDVTSLDWN--ND----GTLLATGSEDGEARIWNK-DGNLIS 270 (524)
T ss_pred CCccceeeeeehhhccccchhhhhhhhhhhhcccCCccCCcceEEec--CC----CCeEEEeecCcEEEEEec-Cchhhh
Confidence 3577899999874 11 13579999999 77 99999999 899999995 677778
Q ss_pred EEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEE
Q 000602 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 137 (1398)
++..|.+ +|.++.|+ ..| .+|++++ |+++.+||..+ ++..+.+.-|..+-.+
T Consensus 271 tl~~Hkg-PI~slKWn-------k~G----~yilS~~vD~ttilwd~~~---------------g~~~q~f~~~s~~~lD 323 (524)
T KOG0273|consen 271 TLGQHKG-PIFSLKWN-------KKG----TYILSGGVDGTTILWDAHT---------------GTVKQQFEFHSAPALD 323 (524)
T ss_pred hhhccCC-ceEEEEEc-------CCC----CEEEeccCCccEEEEeccC---------------ceEEEeeeeccCCccc
Confidence 8887777 99999999 777 5666666 99999999976 4566677778887788
Q ss_pred EEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccc
Q 000602 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~ 217 (1398)
|.|- +...+++.+.|+.|+|+.+....++.++.+|++ .+..+.| +|.+.+|++++.|++++||...
T Consensus 324 VdW~----~~~~F~ts~td~~i~V~kv~~~~P~~t~~GH~g-~V~alk~---n~tg~LLaS~SdD~TlkiWs~~------ 389 (524)
T KOG0273|consen 324 VDWQ----SNDEFATSSTDGCIHVCKVGEDRPVKTFIGHHG-EVNALKW---NPTGSLLASCSDDGTLKIWSMG------ 389 (524)
T ss_pred eEEe----cCceEeecCCCceEEEEEecCCCcceeeecccC-ceEEEEE---CCCCceEEEecCCCeeEeeecC------
Confidence 9997 456689999999999999999999999988665 4667777 7889999999999999999987
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC---------CEEEEEECCCeEEEEEcCCC
Q 000602 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG---------SKLVSVSDDRSARIWEVRAE 288 (1398)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg---------~~LaS~s~Dg~V~iWd~~~~ 288 (1398)
.......+.+|+..|..+.|+|+| ..+++++.|.+|++||+..+
T Consensus 390 ---------------------------~~~~~~~l~~Hskei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 390 ---------------------------QSNSVHDLQAHSKEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred ---------------------------CCcchhhhhhhccceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 556678889999999999999965 37999999999999999998
Q ss_pred cccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEE
Q 000602 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1398)
Q Consensus 289 ~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~lat 365 (1398)
.+ + ..+..|+.+|.+++|+ +.++++|+.||.|.+|+. .++.++.+.+..+ |..+.|+.+|.+|..
T Consensus 443 v~-----i-----~~f~kH~~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~~s~~~~~~--Ifel~Wn~~G~kl~~ 510 (524)
T KOG0273|consen 443 VP-----I-----HTLMKHQEPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLVKSYQGTGG--IFELCWNAAGDKLGA 510 (524)
T ss_pred ce-----e-----EeeccCCCceEEEEecCCCcEEEecCCCCeeEeccccchheeEeecCCCe--EEEEEEcCCCCEEEE
Confidence 76 2 3888999999999999 689999999999999999 8888888887665 999999999999999
Q ss_pred EEcCCcEEEEEcC
Q 000602 366 AGFDSAIKVHQFQ 378 (1398)
Q Consensus 366 gg~Dg~I~iwdl~ 378 (1398)
+-.|+.+++-|++
T Consensus 511 ~~sd~~vcvldlr 523 (524)
T KOG0273|consen 511 CASDGSVCVLDLR 523 (524)
T ss_pred EecCCCceEEEec
Confidence 9999999999874
|
|
| >KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=8.5e-26 Score=243.95 Aligned_cols=340 Identities=17% Similarity=0.236 Sum_probs=263.9
Q ss_pred eeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCC
Q 000602 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 124 ~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg 203 (1398)
-+.++..|++.|.+++.+| +.+++|||+.|....+|++.++.....+.+|..+ +.++.| +.++.+||+|+.+|
T Consensus 56 S~~tF~~H~~svFavsl~P---~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDS-Vt~~~F---shdgtlLATGdmsG 128 (399)
T KOG0296|consen 56 SLVTFDKHTDSVFAVSLHP---NNNLVATGGGDDLAFLWDISTGEFAGELTGHKDS-VTCCSF---SHDGTLLATGDMSG 128 (399)
T ss_pred ceeehhhcCCceEEEEeCC---CCceEEecCCCceEEEEEccCCcceeEecCCCCc-eEEEEE---ccCceEEEecCCCc
Confidence 4568889999999999999 9999999999999999999999988888877664 556665 78999999999999
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iW 283 (1398)
.|+||+.. ++.....+..--..|.-+.|+|.+..|+.|+.||.+.+|
T Consensus 129 ~v~v~~~s---------------------------------tg~~~~~~~~e~~dieWl~WHp~a~illAG~~DGsvWmw 175 (399)
T KOG0296|consen 129 KVLVFKVS---------------------------------TGGEQWKLDQEVEDIEWLKWHPRAHILLAGSTDGSVWMW 175 (399)
T ss_pred cEEEEEcc---------------------------------cCceEEEeecccCceEEEEecccccEEEeecCCCcEEEE
Confidence 99999998 455555665666788899999999999999999999999
Q ss_pred EcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCC
Q 000602 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1398)
.+..+.. . ..+.||+.++.+-.|. |+.++++..||+|++|++ ++.++..+....+....++.++..+
T Consensus 176 ~ip~~~~-----~-----kv~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~ 245 (399)
T KOG0296|consen 176 QIPSQAL-----C-----KVMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAG 245 (399)
T ss_pred ECCCcce-----e-----eEecCCCCCcccccccCCCceEEEEecCceEEEEecCCCceeEEecccccCcCCcccccccc
Confidence 9998543 2 3889999999999997 689999999999999999 9999998886655568899999999
Q ss_pred CEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC
Q 000602 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g 440 (1398)
..+++|..++.+++-.... |+.+.+. ++
T Consensus 246 ~~~~~g~~e~~~~~~~~~s---------------------------------------------------gKVv~~~-n~ 273 (399)
T KOG0296|consen 246 STLTKGNSEGVACGVNNGS---------------------------------------------------GKVVNCN-NG 273 (399)
T ss_pred ceeEeccCCccEEEEcccc---------------------------------------------------ceEEEec-CC
Confidence 9999999999888765410 0111111 11
Q ss_pred cEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCc
Q 000602 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGI 520 (1398)
Q Consensus 441 ~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~ 520 (1398)
... . + .......+.++...+. +..-.+.|+|+-||+|.|||+....... ...+
T Consensus 274 ~~~--------~-----l-~~~~e~~~esve~~~~-----ss~lpL~A~G~vdG~i~iyD~a~~~~R~--------~c~h 326 (399)
T KOG0296|consen 274 TVP--------E-----L-KPSQEELDESVESIPS-----SSKLPLAACGSVDGTIAIYDLAASTLRH--------ICEH 326 (399)
T ss_pred CCc--------c-----c-cccchhhhhhhhhccc-----ccccchhhcccccceEEEEecccchhhe--------eccC
Confidence 000 0 0 0111222233333322 2344678999999999999998654332 1222
Q ss_pred ccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecC
Q 000602 521 ERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL 600 (1398)
Q Consensus 521 ~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~ 600 (1398)
+..+..+.| -+ ..+|++++.+|.|+.||.+.+. +...+ .+|...|.+++++|+.+++++++.
T Consensus 327 e~~V~~l~w--~~-t~~l~t~c~~g~v~~wDaRtG~--------------l~~~y-~GH~~~Il~f~ls~~~~~vvT~s~ 388 (399)
T KOG0296|consen 327 EDGVTKLKW--LN-TDYLLTACANGKVRQWDARTGQ--------------LKFTY-TGHQMGILDFALSPQKRLVVTVSD 388 (399)
T ss_pred CCceEEEEE--cC-cchheeeccCceEEeeeccccc--------------eEEEE-ecCchheeEEEEcCCCcEEEEecC
Confidence 333444333 33 6799999999999999998763 33333 489999999999999999999999
Q ss_pred CCeEEEEECC
Q 000602 601 RGNLVLFPLL 610 (1398)
Q Consensus 601 dGtI~Iwd~~ 610 (1398)
|++.+||+++
T Consensus 389 D~~a~VF~v~ 398 (399)
T KOG0296|consen 389 DNTALVFEVP 398 (399)
T ss_pred CCeEEEEecC
Confidence 9999999875
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-26 Score=243.60 Aligned_cols=281 Identities=20% Similarity=0.316 Sum_probs=232.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-CeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t-g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
|.+.|..+.|+ |+ |.++|+|+ |..|.+|++.. .+-...+++|.+ .|.++.|. +|++ .++.+
T Consensus 46 h~geI~~~~F~--P~----gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~~-------~d~s---~i~S~ 108 (338)
T KOG0265|consen 46 HKGEIYTIKFH--PD----GSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHGM-------RDGS---HILSC 108 (338)
T ss_pred CcceEEEEEEC--CC----CCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeeec-------cCCC---EEEEe
Confidence 88999999999 99 99999988 99999999643 345667788877 79999999 8883 44444
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
+.|++|+.||.++ ++..+.+++|.+-|+++.-+. -+-.++.+|+.|+++++||+++...++++
T Consensus 109 gtDk~v~~wD~~t---------------G~~~rk~k~h~~~vNs~~p~r--rg~~lv~SgsdD~t~kl~D~R~k~~~~t~ 171 (338)
T KOG0265|consen 109 GTDKTVRGWDAET---------------GKRIRKHKGHTSFVNSLDPSR--RGPQLVCSGSDDGTLKLWDIRKKEAIKTF 171 (338)
T ss_pred cCCceEEEEeccc---------------ceeeehhccccceeeecCccc--cCCeEEEecCCCceEEEEeecccchhhcc
Confidence 5599999999997 678889999999999998443 23357888999999999999988887776
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
... ..++++.| ..++..+.+|+.|+.|++||++ .......+.
T Consensus 172 ~~k--yqltAv~f---~d~s~qv~sggIdn~ikvWd~r---------------------------------~~d~~~~ls 213 (338)
T KOG0265|consen 172 ENK--YQLTAVGF---KDTSDQVISGGIDNDIKVWDLR---------------------------------KNDGLYTLS 213 (338)
T ss_pred ccc--eeEEEEEe---cccccceeeccccCceeeeccc---------------------------------cCcceEEee
Confidence 432 34566666 6778899999999999999998 567788999
Q ss_pred CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC--cc--EEEEEEc--CCEEEEEeCC
Q 000602 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--AR--VWDCCLT--DSFIITAGED 327 (1398)
Q Consensus 254 gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~--~~--V~~l~~s--~~~l~sgs~D 327 (1398)
||.+.|+.+..+|+|.++.+-+.|.++++||++..... .+.++ .+.+|. .. ...++|+ +..+-.|+.|
T Consensus 214 Gh~DtIt~lsls~~gs~llsnsMd~tvrvwd~rp~~p~----~R~v~--if~g~~hnfeknlL~cswsp~~~~i~ags~d 287 (338)
T KOG0265|consen 214 GHADTITGLSLSRYGSFLLSNSMDNTVRVWDVRPFAPS----QRCVK--IFQGHIHNFEKNLLKCSWSPNGTKITAGSAD 287 (338)
T ss_pred cccCceeeEEeccCCCccccccccceEEEEEecccCCC----CceEE--EeecchhhhhhhcceeeccCCCCcccccccc
Confidence 99999999999999999999999999999999875441 12232 455543 33 3556676 4788889999
Q ss_pred CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEE
Q 000602 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1398)
Q Consensus 328 g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iw 375 (1398)
..+.+||. ..+.+..+.+|.+ .|.+++|+|...+|.+++.|.+|.+=
T Consensus 288 r~vyvwd~~~r~~lyklpGh~g-svn~~~Fhp~e~iils~~sdk~i~lg 335 (338)
T KOG0265|consen 288 RFVYVWDTTSRRILYKLPGHYG-SVNEVDFHPTEPIILSCSSDKTIYLG 335 (338)
T ss_pred ceEEEeecccccEEEEcCCcce-eEEEeeecCCCcEEEEeccCceeEee
Confidence 99999999 5588899999999 69999999999999999999999763
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.95 E-value=5.8e-28 Score=263.40 Aligned_cols=277 Identities=18% Similarity=0.274 Sum_probs=230.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
-..+|..|.|. |+ |+-|++|+ .|...+|+..+-..-..++.|+. .|.++.++ ++| ..++++
T Consensus 95 vkc~V~~v~Wt--Pe----GRRLltgs~SGEFtLWNg~~fnFEtilQaHDs-~Vr~m~ws-------~~g----~wmiSg 156 (464)
T KOG0284|consen 95 VKCPVNVVRWT--PE----GRRLLTGSQSGEFTLWNGTSFNFETILQAHDS-PVRTMKWS-------HNG----TWMISG 156 (464)
T ss_pred cccceeeEEEc--CC----CceeEeecccccEEEecCceeeHHHHhhhhcc-cceeEEEc-------cCC----CEEEEc
Confidence 34679999999 99 88898988 59999999743221122344554 89999999 887 455555
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCC-CcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~-~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
. ++.|++|+... ..++.+.+|. ..|++++|+| +...+++++.||+|+|||....+.-..
T Consensus 157 D~gG~iKyWqpnm----------------nnVk~~~ahh~eaIRdlafSp---nDskF~t~SdDg~ikiWdf~~~kee~v 217 (464)
T KOG0284|consen 157 DKGGMIKYWQPNM----------------NNVKIIQAHHAEAIRDLAFSP---NDSKFLTCSDDGTIKIWDFRMPKEERV 217 (464)
T ss_pred CCCceEEecccch----------------hhhHHhhHhhhhhhheeccCC---CCceeEEecCCCeEEEEeccCCchhhe
Confidence 4 89999999874 3344444555 8999999999 888899999999999999988777666
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+.+| +-.+.+++|+ |...+|++|+.|+.|++||.+ ++.++.++
T Consensus 218 L~GH-gwdVksvdWH---P~kgLiasgskDnlVKlWDpr---------------------------------Sg~cl~tl 260 (464)
T KOG0284|consen 218 LRGH-GWDVKSVDWH---PTKGLIASGSKDNLVKLWDPR---------------------------------SGSCLATL 260 (464)
T ss_pred eccC-CCCcceeccC---CccceeEEccCCceeEeecCC---------------------------------Ccchhhhh
Confidence 6554 3456778874 567799999999999999999 78899999
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCc
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCT 329 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~ 329 (1398)
.+|+..|.++.|+|++++|+|+|.|..++++|+++.+. + +.+.+|...|+++.|+ +++|.+|+.||.
T Consensus 261 h~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkE-----l-----~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgs 330 (464)
T KOG0284|consen 261 HGHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKE-----L-----FTYRGHKKDVTSLTWHPLNESLFTSGGSDGS 330 (464)
T ss_pred hhccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHH-----H-----HHhhcchhhheeeccccccccceeeccCCCc
Confidence 99999999999999999999999999999999996544 2 3888999999999998 489999999999
Q ss_pred EEEEcCC-CceEEEE-ecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 330 CRVWGSD-GKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 330 i~vWd~~-g~~l~~l-~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
+..|.+. .+++..+ .+|.+ .||+++|+|-|.+|++|+.|.++++|.-
T Consensus 331 vvh~~v~~~~p~~~i~~AHd~-~iwsl~~hPlGhil~tgsnd~t~rfw~r 379 (464)
T KOG0284|consen 331 VVHWVVGLEEPLGEIPPAHDG-EIWSLAYHPLGHILATGSNDRTVRFWTR 379 (464)
T ss_pred eEEEeccccccccCCCccccc-ceeeeeccccceeEeecCCCcceeeecc
Confidence 9999993 5555554 45666 6999999999999999999999999986
|
|
| >KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-28 Score=256.68 Aligned_cols=267 Identities=19% Similarity=0.313 Sum_probs=226.6
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
...|.|+.+. . ..+++|. |++|+|||..+-.++..+.+|.+ .|.|+.|. ++++++++
T Consensus 197 skgVYClQYD--D------~kiVSGlrDnTikiWD~n~~~c~~~L~GHtG-SVLCLqyd-------------~rviisGS 254 (499)
T KOG0281|consen 197 SKGVYCLQYD--D------EKIVSGLRDNTIKIWDKNSLECLKILTGHTG-SVLCLQYD-------------ERVIVSGS 254 (499)
T ss_pred CCceEEEEec--c------hhhhcccccCceEEeccccHHHHHhhhcCCC-cEEeeecc-------------ceEEEecC
Confidence 5679999997 3 5888888 89999999999999999999988 79999987 24555544
Q ss_pred -CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE--EE
Q 000602 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LE 172 (1398)
Q Consensus 96 -d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~--~~ 172 (1398)
|.+|+|||+++ ++++.++-+|.+.|..+.|+. .+++|++.|.++.+||+.....+ ..
T Consensus 255 SDsTvrvWDv~t---------------ge~l~tlihHceaVLhlrf~n-----g~mvtcSkDrsiaVWdm~sps~it~rr 314 (499)
T KOG0281|consen 255 SDSTVRVWDVNT---------------GEPLNTLIHHCEAVLHLRFSN-----GYMVTCSKDRSIAVWDMASPTDITLRR 314 (499)
T ss_pred CCceEEEEeccC---------------CchhhHHhhhcceeEEEEEeC-----CEEEEecCCceeEEEeccCchHHHHHH
Confidence 99999999997 567888889999999999976 78999999999999999765432 11
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+...+...+..+.| +..++++++.|.+|++|+.. +...+.++
T Consensus 315 VLvGHrAaVNvVdf-----d~kyIVsASgDRTikvW~~s---------------------------------t~efvRtl 356 (499)
T KOG0281|consen 315 VLVGHRAAVNVVDF-----DDKYIVSASGDRTIKVWSTS---------------------------------TCEFVRTL 356 (499)
T ss_pred HHhhhhhheeeecc-----ccceEEEecCCceEEEEecc---------------------------------ceeeehhh
Confidence 22334455666655 56799999999999999998 78889999
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~v 332 (1398)
.||...|-++.+ .+++++|||.|.+||+||+..+.+ + +.+.||+.-|.++.|..+.+++|+.||+|+|
T Consensus 357 ~gHkRGIAClQY--r~rlvVSGSSDntIRlwdi~~G~c-----L-----RvLeGHEeLvRciRFd~krIVSGaYDGkikv 424 (499)
T KOG0281|consen 357 NGHKRGIACLQY--RDRLVVSGSSDNTIRLWDIECGAC-----L-----RVLEGHEELVRCIRFDNKRIVSGAYDGKIKV 424 (499)
T ss_pred hcccccceehhc--cCeEEEecCCCceEEEEeccccHH-----H-----HHHhchHHhhhheeecCceeeeccccceEEE
Confidence 999999999887 578999999999999999999988 4 3899999999999999999999999999999
Q ss_pred EcC-CCc---------eEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 333 WGS-DGK---------QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 333 Wd~-~g~---------~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
||+ .+. ++.++..|.++ |..+.| |...|++++.|.+|.|||+.
T Consensus 425 Wdl~aaldpra~~~~~Cl~~lv~hsgR-VFrLQF--D~fqIvsssHddtILiWdFl 477 (499)
T KOG0281|consen 425 WDLQAALDPRAPASTLCLRTLVEHSGR-VFRLQF--DEFQIISSSHDDTILIWDFL 477 (499)
T ss_pred EecccccCCcccccchHHHhhhhccce-eEEEee--cceEEEeccCCCeEEEEEcC
Confidence 998 321 45566778884 999999 46689999999999999994
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=4.9e-24 Score=246.59 Aligned_cols=479 Identities=13% Similarity=0.141 Sum_probs=325.9
Q ss_pred CCCcEEEEeCCcCee---------ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 2 GKKDLSEWRLDVGQY---------LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~h---------~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
.||.|.||++...-| .+.|-+++|+ +. ++++-+|.+|.|.-||+.+++.+..+....+ .|++|+
T Consensus 45 t~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~--e~----~RLFS~g~sg~i~EwDl~~lk~~~~~d~~gg-~IWsia 117 (691)
T KOG2048|consen 45 TDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA--EG----GRLFSSGLSGSITEWDLHTLKQKYNIDSNGG-AIWSIA 117 (691)
T ss_pred cCCcEEEEccCCCceeeEEEecCCCCceeeEEEc--cC----CeEEeecCCceEEEEecccCceeEEecCCCc-ceeEEE
Confidence 478899999998653 3558999999 76 7888778899999999999999888886544 899999
Q ss_pred EeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEE
Q 000602 73 CNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI 152 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Lat 152 (1398)
.+ |.+ +.+.+.+.||.+..++...+. .+....|..-+++|.++.|+| ++..|++
T Consensus 118 i~-------p~~---~~l~IgcddGvl~~~s~~p~~-------------I~~~r~l~rq~sRvLslsw~~---~~~~i~~ 171 (691)
T KOG2048|consen 118 IN-------PEN---TILAIGCDDGVLYDFSIGPDK-------------ITYKRSLMRQKSRVLSLSWNP---TGTKIAG 171 (691)
T ss_pred eC-------Ccc---ceEEeecCCceEEEEecCCce-------------EEEEeecccccceEEEEEecC---CccEEEe
Confidence 99 766 244444568866666666432 555566777789999999999 9999999
Q ss_pred EECCCeEEEEEcCCCeEEEE-------EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCC
Q 000602 153 GCSDNSIRVWDISNSSIILE-------VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1398)
Q Consensus 153 gs~Dg~V~vWd~~~~~~~~~-------l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1398)
|+.||.|++||+.++..+.. +...+.+++|++.+. ....|++|..-|+|++||..
T Consensus 172 Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L----rd~tI~sgDS~G~V~FWd~~-------------- 233 (691)
T KOG2048|consen 172 GSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL----RDSTIASGDSAGTVTFWDSI-------------- 233 (691)
T ss_pred cccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe----ecCcEEEecCCceEEEEccc--------------
Confidence 99999999999999887652 223467889999885 34589999999999999998
Q ss_pred CCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEe
Q 000602 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1398)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1398)
.+..++.+..|.+.|.+++..+++.++.+++.|+.|..+...+... +.+......
T Consensus 234 -------------------~gTLiqS~~~h~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~------~wv~~~~r~ 288 (691)
T KOG2048|consen 234 -------------------FGTLIQSHSCHDADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKS------EWVINSRRD 288 (691)
T ss_pred -------------------CcchhhhhhhhhcceeEEEEcCCCCeEEEccCCCceEEEEecCCcc------ceeeecccc
Confidence 6677788889999999999999999999999999999998887643 111112456
Q ss_pred cCCccEEEEEEcCCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCC--------cEEEEEc
Q 000602 306 GHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS--------AIKVHQF 377 (1398)
Q Consensus 306 gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg--------~I~iwdl 377 (1398)
.|...|.+++..+..+++|+.|.++.+-.... ..+..|.. -...|.+..+..+..+. .+.+|.+
T Consensus 289 ~h~hdvrs~av~~~~l~sgG~d~~l~i~~s~~---~~~~~h~~-----~~~~p~~~~v~~a~~~~L~~~w~~h~v~lwrl 360 (691)
T KOG2048|consen 289 LHAHDVRSMAVIENALISGGRDFTLAICSSRE---FKNMDHRQ-----KNLFPASDRVSVAPENRLLVLWKAHGVDLWRL 360 (691)
T ss_pred CCcccceeeeeecceEEecceeeEEEEccccc---cCchhhhc-----cccccccceeecCccceEEEEeccccccceec
Confidence 78888999999999999999999998866522 11111211 11122333344444444 4444444
Q ss_pred CCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEE
Q 000602 378 QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1398)
Q Consensus 378 ~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~ 457 (1398)
....++ ++. ....+ ........+.|.+.+.+|+|++++.+.-..+..+++......+-..
T Consensus 361 GS~~~~---g~~------~~~~L-----------lkl~~k~~~nIs~~aiSPdg~~Ia~st~~~~~iy~L~~~~~vk~~~ 420 (691)
T KOG2048|consen 361 GSVILQ---GEY------NYIHL-----------LKLFTKEKENISCAAISPDGNLIAISTVSRTKIYRLQPDPNVKVIN 420 (691)
T ss_pred cCcccc---ccc------Chhhh-----------eeeecCCccceeeeccCCCCCEEEEeeccceEEEEeccCcceeEEE
Confidence 211000 000 01111 1112223457999999999999998876666666665544333211
Q ss_pred EEeecC-CccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCc
Q 000602 458 ILQVSE-GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536 (1398)
Q Consensus 458 i~~~~~-~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~ 536 (1398)
+-.... ..+...+ .++.....++++.-....+.++++.+...+.......+ .... .+. .++.|++|+
T Consensus 421 v~~~~~~~~~a~~i-------~ftid~~k~~~~s~~~~~le~~el~~ps~kel~~~~~~---~~~~-~I~-~l~~SsdG~ 488 (691)
T KOG2048|consen 421 VDDVPLALLDASAI-------SFTIDKNKLFLVSKNIFSLEEFELETPSFKELKSIQSQ---AKCP-SIS-RLVVSSDGN 488 (691)
T ss_pred eccchhhhccceee-------EEEecCceEEEEecccceeEEEEecCcchhhhhccccc---cCCC-cce-eEEEcCCCC
Confidence 111110 0011111 11112233344444777888888877654432221111 1111 111 356789999
Q ss_pred EEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeec-CCCEEEEecCCCeEEEEECCC
Q 000602 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASF-EDEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 537 ~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Sp-dg~lLatGs~dGtI~Iwd~~~ 611 (1398)
|+++.+.+|.|.+|+++.... .+ +...-...+|+++++| +..-|+.+..++.++-||++.
T Consensus 489 yiaa~~t~g~I~v~nl~~~~~------------~~---l~~rln~~vTa~~~~~~~~~~lvvats~nQv~efdi~~ 549 (691)
T KOG2048|consen 489 YIAAISTRGQIFVYNLETLES------------HL---LKVRLNIDVTAAAFSPFVRNRLVVATSNNQVFEFDIEA 549 (691)
T ss_pred EEEEEeccceEEEEEccccee------------ec---chhccCcceeeeeccccccCcEEEEecCCeEEEEecch
Confidence 999999999999999986532 11 1112346699999994 567899999999999999954
|
|
| >KOG0295 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.3e-26 Score=249.99 Aligned_cols=255 Identities=20% Similarity=0.332 Sum_probs=215.2
Q ss_pred CCCCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-CeEEEEEEeeeCccEEEE
Q 000602 1 MGKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGI 71 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t-g~~l~~~~~~~~~~V~~i 71 (1398)
++|.++++||..+++ |+..|..|+|+ .. |++|++++ |=.+++||.++ -+++....+|+. .|.++
T Consensus 127 s~d~tikv~D~~tg~~e~~LrGHt~sv~di~~~--a~----Gk~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h-~vS~V 199 (406)
T KOG0295|consen 127 SEDATIKVFDTETGELERSLRGHTDSVFDISFD--AS----GKYLATCSSDLSAKLWDFDTFFRCIKSLIGHEH-GVSSV 199 (406)
T ss_pred cCCceEEEEEccchhhhhhhhccccceeEEEEe--cC----ccEEEecCCccchhheeHHHHHHHHHHhcCccc-ceeeE
Confidence 479999999999998 88889999999 55 89999998 65599999987 466677777766 69999
Q ss_pred EEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 72 ~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
+|- |.| +.++.++-|.+|+.|++++ +.++.++.+|..||..++.+. ||.++|
T Consensus 200 ~f~-------P~g---d~ilS~srD~tik~We~~t---------------g~cv~t~~~h~ewvr~v~v~~---DGti~A 251 (406)
T KOG0295|consen 200 FFL-------PLG---DHILSCSRDNTIKAWECDT---------------GYCVKTFPGHSEWVRMVRVNQ---DGTIIA 251 (406)
T ss_pred EEE-------ecC---CeeeecccccceeEEeccc---------------ceeEEeccCchHhEEEEEecC---CeeEEE
Confidence 999 777 2444444599999999997 778999999999999999998 999999
Q ss_pred EEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecC------------CCCCcEEEEEECCCeEEEEEcccCCccccC
Q 000602 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD------------NLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1398)
Q Consensus 152 tgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~------------s~d~~~lasgs~dg~I~vWd~~~~~~~~~~ 219 (1398)
+++.|.+|++|-+.++++...+..++- .+-+++|.++ ...+.++.+++.|++|++||+.
T Consensus 252 s~s~dqtl~vW~~~t~~~k~~lR~hEh-~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~-------- 322 (406)
T KOG0295|consen 252 SCSNDQTLRVWVVATKQCKAELREHEH-PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVS-------- 322 (406)
T ss_pred ecCCCceEEEEEeccchhhhhhhcccc-ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEecc--------
Confidence 999999999999999866544443332 1222222221 1234689999999999999999
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEe
Q 000602 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1398)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i 299 (1398)
++.++.++.||..+|.+++|+|.|+||+|+.+|+++++||+.+.++ ..
T Consensus 323 -------------------------tg~cL~tL~ghdnwVr~~af~p~Gkyi~ScaDDktlrvwdl~~~~c-----mk-- 370 (406)
T KOG0295|consen 323 -------------------------TGMCLFTLVGHDNWVRGVAFSPGGKYILSCADDKTLRVWDLKNLQC-----MK-- 370 (406)
T ss_pred -------------------------CCeEEEEEecccceeeeeEEcCCCeEEEEEecCCcEEEEEecccee-----ee--
Confidence 7889999999999999999999999999999999999999999877 33
Q ss_pred eeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEc
Q 000602 300 GSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 300 ~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd 334 (1398)
.+..|+.-|.++.|+ -.+++||+-|.++++|.
T Consensus 371 ---~~~ah~hfvt~lDfh~~~p~VvTGsVdqt~KvwE 404 (406)
T KOG0295|consen 371 ---TLEAHEHFVTSLDFHKTAPYVVTGSVDQTVKVWE 404 (406)
T ss_pred ---ccCCCcceeEEEecCCCCceEEeccccceeeeee
Confidence 777999999999998 46999999999999996
|
|
| >KOG2048 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=3.9e-23 Score=239.17 Aligned_cols=508 Identities=14% Similarity=0.140 Sum_probs=333.0
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC-eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg-~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
..+|+++||+ .+ .+.||++- +|+|-||++..+ -+...+.+++...|.+++|+ +.+ +++.++
T Consensus 25 Ps~I~slA~s--~k----S~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~-------e~~----RLFS~g 87 (691)
T KOG2048|consen 25 PSEIVSLAYS--HK----SNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWA-------EGG----RLFSSG 87 (691)
T ss_pred ccceEEEEEe--cc----CCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEc-------cCC----eEEeec
Confidence 4789999999 44 35577776 899999999876 44566777777899999999 776 788888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.++.|.-||+.+ ++....+....+.||+++.+| .++.+++|+.||.+..++...+.......
T Consensus 88 ~sg~i~EwDl~~---------------lk~~~~~d~~gg~IWsiai~p---~~~~l~IgcddGvl~~~s~~p~~I~~~r~ 149 (691)
T KOG2048|consen 88 LSGSITEWDLHT---------------LKQKYNIDSNGGAIWSIAINP---ENTILAIGCDDGVLYDFSIGPDKITYKRS 149 (691)
T ss_pred CCceEEEEeccc---------------CceeEEecCCCcceeEEEeCC---ccceEEeecCCceEEEEecCCceEEEEee
Confidence 899999999986 677777778889999999999 88999999999988888887777654332
Q ss_pred -cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 175 -SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 175 -~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
.....-+.++.| ++++..|++|+.||.|++||...+. ++.+.+. .+..+.
T Consensus 150 l~rq~sRvLslsw---~~~~~~i~~Gs~Dg~Iriwd~~~~~---------------------t~~~~~~-----~~d~l~ 200 (691)
T KOG2048|consen 150 LMRQKSRVLSLSW---NPTGTKIAGGSIDGVIRIWDVKSGQ---------------------TLHIITM-----QLDRLS 200 (691)
T ss_pred cccccceEEEEEe---cCCccEEEecccCceEEEEEcCCCc---------------------eEEEeee-----cccccc
Confidence 344466888888 7889999999999999999998211 0000000 011111
Q ss_pred -CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcE
Q 000602 254 -GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1398)
Q Consensus 254 -gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i 330 (1398)
+-.--|++|.|..+ ..|++|...|+|.+||...+.+ ++ ...-|.+.|.+++.. +++++++|.|+.+
T Consensus 201 k~~~~iVWSv~~Lrd-~tI~sgDS~G~V~FWd~~~gTL-----iq-----S~~~h~adVl~Lav~~~~d~vfsaGvd~~i 269 (691)
T KOG2048|consen 201 KREPTIVWSVLFLRD-STIASGDSAGTVTFWDSIFGTL-----IQ-----SHSCHDADVLALAVADNEDRVFSAGVDPKI 269 (691)
T ss_pred cCCceEEEEEEEeec-CcEEEecCCceEEEEcccCcch-----hh-----hhhhhhcceeEEEEcCCCCeEEEccCCCce
Confidence 13445888888855 4689999999999999999877 44 667799999999998 4899999999999
Q ss_pred EEEcCCCc-----eEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeee
Q 000602 331 RVWGSDGK-----QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1398)
Q Consensus 331 ~vWd~~g~-----~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~ 405 (1398)
..|..++. .......|.. -|.+++..++ .+++||.|..+.+-..... ....|.....+...
T Consensus 270 i~~~~~~~~~~wv~~~~r~~h~h-dvrs~av~~~--~l~sgG~d~~l~i~~s~~~---~~~~h~~~~~~p~~-------- 335 (691)
T KOG2048|consen 270 IQYSLTTNKSEWVINSRRDLHAH-DVRSMAVIEN--ALISGGRDFTLAICSSREF---KNMDHRQKNLFPAS-------- 335 (691)
T ss_pred EEEEecCCccceeeeccccCCcc-cceeeeeecc--eEEecceeeEEEEcccccc---Cchhhhcccccccc--------
Confidence 99988333 1223345655 4999999876 8999999999988766321 01111100000000
Q ss_pred CCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecC------CCceeEEEEeecCCccEEEEeccCCCCCC
Q 000602 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM------DSVNWNKILQVSEGMPIICMDLLSNEPKY 479 (1398)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~------~~~~w~~i~~~~~~~~i~~l~~~~~~~~~ 479 (1398)
..+...+..++++.-....+..|++-.. ......++ ...+...|.|.++
T Consensus 336 -----------------~~v~~a~~~~L~~~w~~h~v~lwrlGS~~~~g~~~~~~Llkl-~~k~~~nIs~~ai------- 390 (691)
T KOG2048|consen 336 -----------------DRVSVAPENRLLVLWKAHGVDLWRLGSVILQGEYNYIHLLKL-FTKEKENISCAAI------- 390 (691)
T ss_pred -----------------ceeecCccceEEEEeccccccceeccCcccccccChhhheee-ecCCccceeeecc-------
Confidence 0111122333333332222332222211 00000111 1223456666666
Q ss_pred cCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEc-CCCcEEEEecCCCCCc
Q 000602 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD-PKGRLKLWQLCDPFSS 558 (1398)
Q Consensus 480 s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s-~dg~I~iWdi~~~~~~ 558 (1398)
+|++++|+.+.-. ..+||.+........... ...+....-.+...|+-|+..++.++ ....+.+.+.+.+...
T Consensus 391 -SPdg~~Ia~st~~-~~~iy~L~~~~~vk~~~v----~~~~~~~~~a~~i~ftid~~k~~~~s~~~~~le~~el~~ps~k 464 (691)
T KOG2048|consen 391 -SPDGNLIAISTVS-RTKIYRLQPDPNVKVINV----DDVPLALLDASAISFTIDKNKLFLVSKNIFSLEEFELETPSFK 464 (691)
T ss_pred -CCCCCEEEEeecc-ceEEEEeccCcceeEEEe----ccchhhhccceeeEEEecCceEEEEecccceeEEEEecCcchh
Confidence 5889999999854 788888875432211111 11111111122344666666666555 5566777776654321
Q ss_pred cccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcc
Q 000602 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGIS 638 (1398)
Q Consensus 559 ~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~ 638 (1398)
++.-.. ..+-...|+.+..||+|++||+.+.+|.|++|++.+... ..+.+ .+ ..
T Consensus 465 ---------el~~~~--~~~~~~~I~~l~~SsdG~yiaa~~t~g~I~v~nl~~~~~--------~~l~~--rl-----n~ 518 (691)
T KOG2048|consen 465 ---------ELKSIQ--SQAKCPSISRLVVSSDGNYIAAISTRGQIFVYNLETLES--------HLLKV--RL-----NI 518 (691)
T ss_pred ---------hhhccc--cccCCCcceeEEEcCCCCEEEEEeccceEEEEEccccee--------ecchh--cc-----Cc
Confidence 001000 112345689999999999999999999999999997421 11110 11 13
Q ss_pred cEEEEEEEeeCCCceEEEEEcCCccEEEEEEecC
Q 000602 639 TVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1398)
Q Consensus 639 ~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~ 672 (1398)
.||.++|.+ .+...|+.+-.|+.+.-++++..
T Consensus 519 ~vTa~~~~~--~~~~~lvvats~nQv~efdi~~~ 550 (691)
T KOG2048|consen 519 DVTAAAFSP--FVRNRLVVATSNNQVFEFDIEAR 550 (691)
T ss_pred ceeeeeccc--cccCcEEEEecCCeEEEEecchh
Confidence 588888884 34456777778899999988544
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.95 E-value=6.5e-25 Score=250.94 Aligned_cols=278 Identities=22% Similarity=0.419 Sum_probs=235.1
Q ss_pred eeccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 15 ~h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
.|.++|++++|+ |+ +++|++++ ++.|++||+.+++....+..|.. .+..+.|+ |++ ..+++
T Consensus 7 ~h~~~i~~~~~~--~~----~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~-~i~~~~~~-------~~~----~~l~~ 68 (289)
T cd00200 7 GHTGGVTCVAFS--PD----GKLLATGSGDGTIKVWDLETGELLRTLKGHTG-PVRDVAAS-------ADG----TYLAS 68 (289)
T ss_pred ccCCCEEEEEEc--CC----CCEEEEeecCcEEEEEEeeCCCcEEEEecCCc-ceeEEEEC-------CCC----CEEEE
Confidence 378999999999 98 88999988 89999999999888778877665 68899999 876 45555
Q ss_pred Ec-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 94 ~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
++ ++.|++|++.. .+....+..|...|.++.|+| ++.++++++.|+.|++||+.+++....
T Consensus 69 ~~~~~~i~i~~~~~---------------~~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~~~~i~~~~~~~~~~~~~ 130 (289)
T cd00200 69 GSSDKTIRLWDLET---------------GECVRTLTGHTSYVSSVAFSP---DGRILSSSSRDKTIKVWDVETGKCLTT 130 (289)
T ss_pred EcCCCeEEEEEcCc---------------ccceEEEeccCCcEEEEEEcC---CCCEEEEecCCCeEEEEECCCcEEEEE
Confidence 55 99999999985 234556678888999999999 888888888899999999998888877
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+..+. ..+.++.+ ++++.++++++.++.|++||+. ..+.+..+
T Consensus 131 ~~~~~-~~i~~~~~---~~~~~~l~~~~~~~~i~i~d~~---------------------------------~~~~~~~~ 173 (289)
T cd00200 131 LRGHT-DWVNSVAF---SPDGTFVASSSQDGTIKLWDLR---------------------------------TGKCVATL 173 (289)
T ss_pred eccCC-CcEEEEEE---cCcCCEEEEEcCCCcEEEEEcc---------------------------------ccccceeE
Confidence 77443 34667776 5668888888889999999998 45566777
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTC 330 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i 330 (1398)
..|...|.++.|+|+++.+++++.|+.|++||+..++. . ..+..|...+.++.|++ .++++++.|+.+
T Consensus 174 ~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i 243 (289)
T cd00200 174 TGHTGEVNSVAFSPDGEKLLSSSSDGTIKLWDLSTGKC-----L-----GTLRGHENGVNSVAFSPDGYLLASGSEDGTI 243 (289)
T ss_pred ecCccccceEEECCCcCEEEEecCCCcEEEEECCCCce-----e-----cchhhcCCceEEEEEcCCCcEEEEEcCCCcE
Confidence 78999999999999999999999999999999987654 2 24457888999999984 677777779999
Q ss_pred EEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 331 ~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
++|++ .++.+..+..|.. .|.+++|+|++.+|++++.||.+++|+
T Consensus 244 ~i~~~~~~~~~~~~~~~~~-~i~~~~~~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 244 RVWDLRTGECVQTLSGHTN-SVTSLAWSPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred EEEEcCCceeEEEccccCC-cEEEEEECCCCCEEEEecCCCeEEecC
Confidence 99999 6888888888887 699999999999999999999999996
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.1e-25 Score=275.16 Aligned_cols=280 Identities=20% Similarity=0.344 Sum_probs=239.3
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~--~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
+...|+++.|+ |+ |++++++. ++.+++|+..+++ .++.+.+|.. .|.+++|+ |++ .+++
T Consensus 158 ~~~sv~~~~fs--~~----g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~-~v~~~~fs-------~d~----~~l~ 219 (456)
T KOG0266|consen 158 ECPSVTCVDFS--PD----GRALAAASSDGLIRIWKLEGIKSNLLRELSGHTR-GVSDVAFS-------PDG----SYLL 219 (456)
T ss_pred ccCceEEEEEc--CC----CCeEEEccCCCcEEEeecccccchhhcccccccc-ceeeeEEC-------CCC----cEEE
Confidence 46789999999 99 88998887 8999999998887 7777777666 79999999 998 4555
Q ss_pred EEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEE
Q 000602 93 LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1398)
Q Consensus 93 ~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~ 171 (1398)
+++ |++++|||+.. ..+.++++++|...|++++|+| +++++++|+.|++|+|||+++++++.
T Consensus 220 s~s~D~tiriwd~~~--------------~~~~~~~l~gH~~~v~~~~f~p---~g~~i~Sgs~D~tvriWd~~~~~~~~ 282 (456)
T KOG0266|consen 220 SGSDDKTLRIWDLKD--------------DGRNLKTLKGHSTYVTSVAFSP---DGNLLVSGSDDGTVRIWDVRTGECVR 282 (456)
T ss_pred EecCCceEEEeeccC--------------CCeEEEEecCCCCceEEEEecC---CCCEEEEecCCCcEEEEeccCCeEEE
Confidence 555 99999999943 2578899999999999999999 99999999999999999999999999
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee--EE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV--NL 249 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~--~~ 249 (1398)
.+..+... +.+++| ++++.+|++++.|+.|++||+. ++. +.
T Consensus 283 ~l~~hs~~-is~~~f---~~d~~~l~s~s~d~~i~vwd~~---------------------------------~~~~~~~ 325 (456)
T KOG0266|consen 283 KLKGHSDG-ISGLAF---SPDGNLLVSASYDGTIRVWDLE---------------------------------TGSKLCL 325 (456)
T ss_pred eeeccCCc-eEEEEE---CCCCCEEEEcCCCccEEEEECC---------------------------------CCceeee
Confidence 99888764 556666 8899999999999999999998 334 45
Q ss_pred EEEeCccCC--EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEE---EEc--CCEEE
Q 000602 250 FRLVGHEGS--IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC---CLT--DSFII 322 (1398)
Q Consensus 250 ~~l~gH~~~--I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l---~~s--~~~l~ 322 (1398)
..+.+++.. +..+.|+|++.++++++.|+.+++||+..... .. ...+|...++++ .+. +.+++
T Consensus 326 ~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~i~ 395 (456)
T KOG0266|consen 326 KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKS-----VG-----TYTGHSNLVRCIFSPTLSTGGKLIY 395 (456)
T ss_pred ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcc-----ee-----eecccCCcceeEecccccCCCCeEE
Confidence 666777666 99999999999999999999999999998766 22 666777654333 222 68999
Q ss_pred EEeCCCcEEEEcC-CCceEEEEecc-cCccEEEEEEcCCCCEEEEEE--cCCcEEEEEcC
Q 000602 323 TAGEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAG--FDSAIKVHQFQ 378 (1398)
Q Consensus 323 sgs~Dg~i~vWd~-~g~~l~~l~~h-~~~~V~sl~~spdg~~latgg--~Dg~I~iwdl~ 378 (1398)
+|++|+.|.+|+. ++..+..+.+| .. .+..++++|...++++++ .|+.+++|...
T Consensus 396 sg~~d~~v~~~~~~s~~~~~~l~~h~~~-~~~~~~~~~~~~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 396 SGSEDGSVYVWDSSSGGILQRLEGHSKA-AVSDLSSHPTENLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred EEeCCceEEEEeCCccchhhhhcCCCCC-ceeccccCCCcCeeeecCcCCCceEEEecCC
Confidence 9999999999999 78888999999 66 689999999999999998 79999999763
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.94 E-value=1.4e-24 Score=285.34 Aligned_cols=285 Identities=18% Similarity=0.249 Sum_probs=223.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----e----EEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----T----LIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg----~----~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
|.+.|++++|+ |+ +++||+|+ |+.|+|||..+. . .+..+.. ...|.+++|+ |...
T Consensus 482 ~~~~V~~i~fs--~d----g~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~~~~--~~~v~~l~~~-------~~~~- 545 (793)
T PLN00181 482 SSNLVCAIGFD--RD----GEFFATAGVNKKIKIFECESIIKDGRDIHYPVVELAS--RSKLSGICWN-------SYIK- 545 (793)
T ss_pred CCCcEEEEEEC--CC----CCEEEEEeCCCEEEEEECCcccccccccccceEEecc--cCceeeEEec-------cCCC-
Confidence 77889999999 99 89999988 899999997542 1 1222222 2368999998 5421
Q ss_pred ceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 87 ~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
..|++++ |++|+|||+.. .+.+..+.+|.+.|++++|+| .++.+|++|+.|++|++||+.
T Consensus 546 --~~las~~~Dg~v~lWd~~~---------------~~~~~~~~~H~~~V~~l~~~p--~~~~~L~Sgs~Dg~v~iWd~~ 606 (793)
T PLN00181 546 --SQVASSNFEGVVQVWDVAR---------------SQLVTEMKEHEKRVWSIDYSS--ADPTLLASGSDDGSVKLWSIN 606 (793)
T ss_pred --CEEEEEeCCCeEEEEECCC---------------CeEEEEecCCCCCEEEEEEcC--CCCCEEEEEcCCCEEEEEECC
Confidence 4566655 99999999975 456778889999999999996 267899999999999999999
Q ss_pred CCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000602 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1398)
Q Consensus 166 ~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1398)
++..+..+..+ ..+.++.|. ++++.+|++|+.||.|++||++. .
T Consensus 607 ~~~~~~~~~~~--~~v~~v~~~--~~~g~~latgs~dg~I~iwD~~~--------------------------------~ 650 (793)
T PLN00181 607 QGVSIGTIKTK--ANICCVQFP--SESGRSLAFGSADHKVYYYDLRN--------------------------------P 650 (793)
T ss_pred CCcEEEEEecC--CCeEEEEEe--CCCCCEEEEEeCCCeEEEEECCC--------------------------------C
Confidence 99888777644 235566653 45789999999999999999971 1
Q ss_pred eeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEE
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT 323 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~s 323 (1398)
..++..+.+|...|.++.|. ++.+|++++.|++|++||+...... .....+ ..+.+|...+.+++|+ +.+|++
T Consensus 651 ~~~~~~~~~h~~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~--~~~~~l--~~~~gh~~~i~~v~~s~~~~~las 725 (793)
T PLN00181 651 KLPLCTMIGHSKTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISG--INETPL--HSFMGHTNVKNFVGLSVSDGYIAT 725 (793)
T ss_pred CccceEecCCCCCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccc--cCCcce--EEEcCCCCCeeEEEEcCCCCEEEE
Confidence 22456678999999999997 7889999999999999999754210 001122 2778999999999998 689999
Q ss_pred EeCCCcEEEEcC-CCceEEEE-------------ecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 324 AGEDCTCRVWGS-DGKQLKMI-------------KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 324 gs~Dg~i~vWd~-~g~~l~~l-------------~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
|+.|+++++|+. ...++..+ ..+.. .|.+++|+|++..|++|+.||.|+||++
T Consensus 726 gs~D~~v~iw~~~~~~~~~s~~~~~~~~~~~~~~~~~~~-~V~~v~ws~~~~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 726 GSETNEVFVYHKAFPMPVLSYKFKTIDPVSGLEVDDASQ-FISSVCWRGQSSTLVAANSTGNIKILEM 792 (793)
T ss_pred EeCCCEEEEEECCCCCceEEEecccCCcccccccCCCCc-EEEEEEEcCCCCeEEEecCCCcEEEEec
Confidence 999999999997 44333222 12233 5999999999999999999999999986
|
|
| >KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription] | Back alignment and domain information |
|---|
Probab=99.94 E-value=6.4e-26 Score=267.53 Aligned_cols=247 Identities=18% Similarity=0.318 Sum_probs=206.8
Q ss_pred CCCcEEEEeCCcCeeccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEecccccc
Q 000602 2 GKKDLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~ 80 (1398)
.|..|++|.+...+ ..++...++. +. +-.++ |-.+.+-|-.++....++.+|.+ +|.+..|+
T Consensus 398 ~dS~i~~~Sl~p~k-l~~lk~~~~l--~~-------~d~~sad~~~~~~D~~~~~~~~~L~GH~G-PVyg~sFs------ 460 (707)
T KOG0263|consen 398 VDSSVRVWSLTPKK-LKKLKDASDL--SN-------IDTESADVDVDMLDDDSSGTSRTLYGHSG-PVYGCSFS------ 460 (707)
T ss_pred cccEEEEEecchhh-hccccchhhh--cc-------ccccccchhhhhccccCCceeEEeecCCC-ceeeeeec------
Confidence 36779999988653 3344443333 21 11122 44477888877777788898888 89999999
Q ss_pred CCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeE
Q 000602 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1398)
Q Consensus 81 ~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V 159 (1398)
|+. ++|++++ |++||+|.+.+ ...+-.++||..+||++.|+| .|-++|||+.|++.
T Consensus 461 -Pd~----rfLlScSED~svRLWsl~t---------------~s~~V~y~GH~~PVwdV~F~P---~GyYFatas~D~tA 517 (707)
T KOG0263|consen 461 -PDR----RFLLSCSEDSSVRLWSLDT---------------WSCLVIYKGHLAPVWDVQFAP---RGYYFATASHDQTA 517 (707)
T ss_pred -ccc----cceeeccCCcceeeeeccc---------------ceeEEEecCCCcceeeEEecC---CceEEEecCCCcee
Confidence 886 5666555 89999999997 667778889999999999999 99999999999999
Q ss_pred EEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
++|.......++.+.+|... +-++.| .|+..++++|+.|.++++||+.
T Consensus 518 rLWs~d~~~PlRifaghlsD-V~cv~F---HPNs~Y~aTGSsD~tVRlWDv~---------------------------- 565 (707)
T KOG0263|consen 518 RLWSTDHNKPLRIFAGHLSD-VDCVSF---HPNSNYVATGSSDRTVRLWDVS---------------------------- 565 (707)
T ss_pred eeeecccCCchhhhcccccc-cceEEE---CCcccccccCCCCceEEEEEcC----------------------------
Confidence 99999988887777766543 456666 5778999999999999999998
Q ss_pred cccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-- 317 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-- 317 (1398)
++..++.|.||.++|.+|+|||+|++|+||+.|+.|.+||+.+++. +. .+.+|++.|.++.|+
T Consensus 566 -----~G~~VRiF~GH~~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-----v~-----~l~~Ht~ti~SlsFS~d 630 (707)
T KOG0263|consen 566 -----TGNSVRIFTGHKGPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-----VK-----QLKGHTGTIYSLSFSRD 630 (707)
T ss_pred -----CCcEEEEecCCCCceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-----hh-----hhhcccCceeEEEEecC
Confidence 7788999999999999999999999999999999999999999876 33 788999999999998
Q ss_pred CCEEEEEeCCCcEEEEcC
Q 000602 318 DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 318 ~~~l~sgs~Dg~i~vWd~ 335 (1398)
+..|++||.|++|++||+
T Consensus 631 g~vLasgg~DnsV~lWD~ 648 (707)
T KOG0263|consen 631 GNVLASGGADNSVRLWDL 648 (707)
T ss_pred CCEEEecCCCCeEEEEEc
Confidence 799999999999999998
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.94 E-value=4.3e-25 Score=224.82 Aligned_cols=273 Identities=18% Similarity=0.233 Sum_probs=222.4
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
+.++|.++.|+ -| |.|.++++ |.+|++|++..|.+++++.+|.. .|..++.+ .|. ..++++
T Consensus 16 ~qgaV~avryN--~d----GnY~ltcGsdrtvrLWNp~rg~liktYsghG~-EVlD~~~s-------~Dn----skf~s~ 77 (307)
T KOG0316|consen 16 AQGAVRAVRYN--VD----GNYCLTCGSDRTVRLWNPLRGALIKTYSGHGH-EVLDAALS-------SDN----SKFASC 77 (307)
T ss_pred cccceEEEEEc--cC----CCEEEEcCCCceEEeecccccceeeeecCCCc-eeeecccc-------ccc----cccccC
Confidence 67999999999 88 88877765 89999999999999999998655 79999988 665 455555
Q ss_pred -cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC--eEEE
Q 000602 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIIL 171 (1398)
Q Consensus 95 -gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~--~~~~ 171 (1398)
||+.|.+||+++ ++..+.+.+|.+.|+.++|+. +...+++|+-|.++++||.++. ++++
T Consensus 78 GgDk~v~vwDV~T---------------Gkv~Rr~rgH~aqVNtV~fNe---esSVv~SgsfD~s~r~wDCRS~s~ePiQ 139 (307)
T KOG0316|consen 78 GGDKAVQVWDVNT---------------GKVDRRFRGHLAQVNTVRFNE---ESSVVASGSFDSSVRLWDCRSRSFEPIQ 139 (307)
T ss_pred CCCceEEEEEccc---------------CeeeeecccccceeeEEEecC---cceEEEeccccceeEEEEcccCCCCccc
Confidence 599999999997 788999999999999999998 8899999999999999999764 3455
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
.+... ...+.++.+ .+..|++|+.||+++.||++ .++....
T Consensus 140 ildea-~D~V~Si~v-----~~heIvaGS~DGtvRtydiR---------------------------------~G~l~sD 180 (307)
T KOG0316|consen 140 ILDEA-KDGVSSIDV-----AEHEIVAGSVDGTVRTYDIR---------------------------------KGTLSSD 180 (307)
T ss_pred hhhhh-cCceeEEEe-----cccEEEeeccCCcEEEEEee---------------------------------cceeehh
Confidence 44433 334556654 46789999999999999999 4444433
Q ss_pred EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEE--EEEEc--CCEEEEEeCC
Q 000602 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW--DCCLT--DSFIITAGED 327 (1398)
Q Consensus 252 l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~--~l~~s--~~~l~sgs~D 327 (1398)
.. ..+|+++.|++|++..+.++.|+++|+-|-.+++. ++ ...||...-. .+++. ...+++|++|
T Consensus 181 y~--g~pit~vs~s~d~nc~La~~l~stlrLlDk~tGkl-----L~-----sYkGhkn~eykldc~l~qsdthV~sgSED 248 (307)
T KOG0316|consen 181 YF--GHPITSVSFSKDGNCSLASSLDSTLRLLDKETGKL-----LK-----SYKGHKNMEYKLDCCLNQSDTHVFSGSED 248 (307)
T ss_pred hc--CCcceeEEecCCCCEEEEeeccceeeecccchhHH-----HH-----HhcccccceeeeeeeecccceeEEeccCC
Confidence 33 45899999999999999999999999999999887 33 6678876433 33443 6899999999
Q ss_pred CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 328 g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
|.+.+||+ ++..+..+..+....|.+++++|.-..++++... .+.+|-
T Consensus 249 G~Vy~wdLvd~~~~sk~~~~~~v~v~dl~~hp~~~~f~~A~~~-~~~~~~ 297 (307)
T KOG0316|consen 249 GKVYFWDLVDETQISKLSVVSTVIVTDLSCHPTMDDFITATGH-GDLFWY 297 (307)
T ss_pred ceEEEEEeccceeeeeeccCCceeEEeeecccCccceeEecCC-ceecee
Confidence 99999999 8899999998887458999999988777776643 444554
|
|
| >KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1e-25 Score=245.91 Aligned_cols=271 Identities=13% Similarity=0.195 Sum_probs=226.0
Q ss_pred ccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecC
Q 000602 66 IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1398)
Q Consensus 66 ~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 145 (1398)
..|..|.|. |+|+ ++++.+..|.+.+|+... +.....+..|.++|.++.|++
T Consensus 97 c~V~~v~Wt-------PeGR---RLltgs~SGEFtLWNg~~---------------fnFEtilQaHDs~Vr~m~ws~--- 148 (464)
T KOG0284|consen 97 CPVNVVRWT-------PEGR---RLLTGSQSGEFTLWNGTS---------------FNFETILQAHDSPVRTMKWSH--- 148 (464)
T ss_pred cceeeEEEc-------CCCc---eeEeecccccEEEecCce---------------eeHHHHhhhhcccceeEEEcc---
Confidence 468899999 9994 566666689999999864 334445678999999999999
Q ss_pred CCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCC
Q 000602 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1398)
++.++++|..+|.|++|+..- ..++.+..++...+..++| +|+...+++++.||+|+|||..
T Consensus 149 ~g~wmiSgD~gG~iKyWqpnm-nnVk~~~ahh~eaIRdlaf---SpnDskF~t~SdDg~ikiWdf~-------------- 210 (464)
T KOG0284|consen 149 NGTWMISGDKGGMIKYWQPNM-NNVKIIQAHHAEAIRDLAF---SPNDSKFLTCSDDGTIKIWDFR-------------- 210 (464)
T ss_pred CCCEEEEcCCCceEEecccch-hhhHHhhHhhhhhhheecc---CCCCceeEEecCCCeEEEEecc--------------
Confidence 999999999999999999853 3344455555455667776 7788999999999999999988
Q ss_pred CCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEe
Q 000602 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1398)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1398)
..+.-..+.||.-.|.+++|+|....++|+|.|..|++||.+++.+ + .++.
T Consensus 211 -------------------~~kee~vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg~c-----l-----~tlh 261 (464)
T KOG0284|consen 211 -------------------MPKEERVLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSGSC-----L-----ATLH 261 (464)
T ss_pred -------------------CCchhheeccCCCCcceeccCCccceeEEccCCceeEeecCCCcch-----h-----hhhh
Confidence 4445556799999999999999999999999999999999999988 3 4889
Q ss_pred cCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCC-CEEEEEEcCCcEEEEEcCCC-
Q 000602 306 GHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAF- 380 (1398)
Q Consensus 306 gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg-~~latgg~Dg~I~iwdl~~~- 380 (1398)
+|...|..+.|. +++|+|+|+|..++++|+ .-+.+.++++|..+ |++++|+|-. .+|.+||.||.|..|.+...
T Consensus 262 ~HKntVl~~~f~~n~N~Llt~skD~~~kv~DiR~mkEl~~~r~Hkkd-v~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~ 340 (464)
T KOG0284|consen 262 GHKNTVLAVKFNPNGNWLLTGSKDQSCKVFDIRTMKELFTYRGHKKD-VTSLTWHPLNESLFTSGGSDGSVVHWVVGLEE 340 (464)
T ss_pred hccceEEEEEEcCCCCeeEEccCCceEEEEehhHhHHHHHhhcchhh-heeeccccccccceeeccCCCceEEEeccccc
Confidence 999999999998 689999999999999999 68889999999995 9999999954 58899999999999998421
Q ss_pred CcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCc
Q 000602 381 LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGY 441 (1398)
Q Consensus 381 ~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~ 441 (1398)
.+. ..-.+|...|.+++|.|=|.+|+++++.+
T Consensus 341 p~~-----------------------------~i~~AHd~~iwsl~~hPlGhil~tgsnd~ 372 (464)
T KOG0284|consen 341 PLG-----------------------------EIPPAHDGEIWSLAYHPLGHILATGSNDR 372 (464)
T ss_pred ccc-----------------------------CCCcccccceeeeeccccceeEeecCCCc
Confidence 111 11225677899999999999999876554
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.4e-25 Score=238.44 Aligned_cols=278 Identities=16% Similarity=0.263 Sum_probs=225.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC---eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg---~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
|...|.-+.|| ++ |+|||+++ |.+..||++... ++.+++.+|.. +|.-|.|| ||. ++|
T Consensus 223 htdEVWfl~FS--~n----GkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~-~V~yi~wS-------PDd----ryL 284 (519)
T KOG0293|consen 223 HTDEVWFLQFS--HN----GKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQ-PVSYIMWS-------PDD----RYL 284 (519)
T ss_pred CCCcEEEEEEc--CC----CeeEeeccCCceEEEEEEecCcceeeeeeeecccC-ceEEEEEC-------CCC----CeE
Confidence 88899999999 98 99999999 899999987644 45678887766 89999999 996 566
Q ss_pred EEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeec-ccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 92 a~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
+++| +..+++||+.++. +.+.+ .+|...+.+++|.| ||..+++|+.|+++..||++. ..
T Consensus 285 laCg~~e~~~lwDv~tgd---------------~~~~y~~~~~~S~~sc~W~p---Dg~~~V~Gs~dr~i~~wdlDg-n~ 345 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGD---------------LRHLYPSGLGFSVSSCAWCP---DGFRFVTGSPDRTIIMWDLDG-NI 345 (519)
T ss_pred EecCchHheeeccCCcch---------------hhhhcccCcCCCcceeEEcc---CCceeEecCCCCcEEEecCCc-ch
Confidence 6666 8889999999744 22222 23567899999999 999999999999999999954 34
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
+...++-...-++.+++ ++||.++++.+.|..|++++... ....
T Consensus 346 ~~~W~gvr~~~v~dlai---t~Dgk~vl~v~~d~~i~l~~~e~---------------------------------~~dr 389 (519)
T KOG0293|consen 346 LGNWEGVRDPKVHDLAI---TYDGKYVLLVTVDKKIRLYNREA---------------------------------RVDR 389 (519)
T ss_pred hhcccccccceeEEEEE---cCCCcEEEEEecccceeeechhh---------------------------------hhhh
Confidence 44444444455778877 78999999999999999999871 1111
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc--EEEEEEc---CCEEEEE
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR--VWDCCLT---DSFIITA 324 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~--V~~l~~s---~~~l~sg 324 (1398)
. +..-..+|+++..|.|+++++.--.+..+++||+..... + ..+.||... +-.-+|. ..++++|
T Consensus 390 ~-lise~~~its~~iS~d~k~~LvnL~~qei~LWDl~e~~l-----v-----~kY~Ghkq~~fiIrSCFgg~~~~fiaSG 458 (519)
T KOG0293|consen 390 G-LISEEQPITSFSISKDGKLALVNLQDQEIHLWDLEENKL-----V-----RKYFGHKQGHFIIRSCFGGGNDKFIASG 458 (519)
T ss_pred c-cccccCceeEEEEcCCCcEEEEEcccCeeEEeecchhhH-----H-----HHhhcccccceEEEeccCCCCcceEEec
Confidence 1 334567899999999999999999999999999997665 3 367788664 3333454 3799999
Q ss_pred eCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCC-CEEEEEEcCCcEEEEEcC
Q 000602 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 325 s~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg-~~latgg~Dg~I~iwdl~ 378 (1398)
++|+.|+||+. +|+++..+.||.. .|.+++|+|.. ..+|++|.||+||||-+.
T Consensus 459 SED~kvyIWhr~sgkll~~LsGHs~-~vNcVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 459 SEDSKVYIWHRISGKLLAVLSGHSK-TVNCVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred CCCceEEEEEccCCceeEeecCCcc-eeeEEecCCCCHHHhhccCCCCeEEEecCC
Confidence 99999999999 9999999999998 69999999965 478999999999999874
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.3e-24 Score=224.05 Aligned_cols=282 Identities=16% Similarity=0.270 Sum_probs=224.5
Q ss_pred EEEEEEecCCCCCCCCEEEE-E------eCCcEEEEECCCCeEEEEEEeee-CccEEEEEEeccccccCCCCccceeEEE
Q 000602 21 SALCFVHLPSHLSSLPFLLA-G------SGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaa-g------~dg~I~Iwd~~tg~~l~~~~~~~-~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
.++.|| |= -.++++++ + ++|.+.|-++..++-+..+..++ ...+.+++|+ +... +.+++
T Consensus 12 ysvqfS--Pf--~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Ws-------e~~e--~~~~~ 78 (311)
T KOG0277|consen 12 YSVQFS--PF--VENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWS-------ENHE--NQVIA 78 (311)
T ss_pred ceeEec--cc--ccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeec-------CCCc--ceEEE
Confidence 467888 73 11344433 2 24899999997555555554432 2369999999 4321 36888
Q ss_pred EEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 93 ~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
+.|||+++|||+... .++++.++.|...|.++.|++ .++..+++++.|++|++|+...++.+.+
T Consensus 79 a~GDGSLrl~d~~~~--------------s~Pi~~~kEH~~EV~Svdwn~--~~r~~~ltsSWD~TiKLW~~~r~~Sv~T 142 (311)
T KOG0277|consen 79 ASGDGSLRLFDLTMP--------------SKPIHKFKEHKREVYSVDWNT--VRRRIFLTSSWDGTIKLWDPNRPNSVQT 142 (311)
T ss_pred EecCceEEEeccCCC--------------CcchhHHHhhhhheEEecccc--ccceeEEeeccCCceEeecCCCCcceEe
Confidence 889999999996542 457889999999999999998 3667788899999999999999999999
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+.++.. .+|...|.+. ...++++++.|+.+++||++ ..++.+. +
T Consensus 143 f~gh~~-~Iy~a~~sp~--~~nlfas~Sgd~~l~lwdvr--------------------------------~~gk~~~-i 186 (311)
T KOG0277|consen 143 FNGHNS-CIYQAAFSPH--IPNLFASASGDGTLRLWDVR--------------------------------SPGKFMS-I 186 (311)
T ss_pred ecCCcc-EEEEEecCCC--CCCeEEEccCCceEEEEEec--------------------------------CCCceeE-E
Confidence 988655 5788888654 46789999999999999998 1344444 8
Q ss_pred eCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCC
Q 000602 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDC 328 (1398)
Q Consensus 253 ~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg 328 (1398)
..|...|.++.|+. +...|+|++.|+.||.||++.-+.+ + ..+.+|.-.|..++|+| ..|++++.|=
T Consensus 187 ~ah~~Eil~cdw~ky~~~vl~Tg~vd~~vr~wDir~~r~p----l-----~eL~gh~~AVRkvk~Sph~~~lLaSasYDm 257 (311)
T KOG0277|consen 187 EAHNSEILCCDWSKYNHNVLATGGVDNLVRGWDIRNLRTP----L-----FELNGHGLAVRKVKFSPHHASLLASASYDM 257 (311)
T ss_pred EeccceeEeecccccCCcEEEecCCCceEEEEehhhcccc----c-----eeecCCceEEEEEecCcchhhHhhhccccc
Confidence 88999999999997 6678999999999999999986542 2 38899999999999996 7899999999
Q ss_pred cEEEEcC--CCceEEEEecccCccEEEEEEcC-CCCEEEEEEcCCcEEEEEc
Q 000602 329 TCRVWGS--DGKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 329 ~i~vWd~--~g~~l~~l~~h~~~~V~sl~~sp-dg~~latgg~Dg~I~iwdl 377 (1398)
++||||. ....+.+...|.. -|..+.|++ ++.++|++|.|+.+.||+.
T Consensus 258 T~riw~~~~~ds~~e~~~~HtE-Fv~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 258 TVRIWDPERQDSAIETVDHHTE-FVCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred eEEecccccchhhhhhhhccce-EEeccccccccCceeeecccccceeeecc
Confidence 9999999 3345556666766 588999986 4669999999999999985
|
|
| >KOG0293 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.6e-24 Score=236.23 Aligned_cols=294 Identities=16% Similarity=0.214 Sum_probs=224.1
Q ss_pred eEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEE
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITA 324 (1398)
Q Consensus 247 ~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sg 324 (1398)
+..+.+..|.+.|+-+.||++|++|||+|.|.+..+|++..... ++.. .++.+|..+|.-+.|+| ++|++|
T Consensus 215 qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~-----~kl~--~tlvgh~~~V~yi~wSPDdryLlaC 287 (519)
T KOG0293|consen 215 QTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVH-----FKLK--KTLVGHSQPVSYIMWSPDDRYLLAC 287 (519)
T ss_pred hhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcc-----eeee--eeeecccCceEEEEECCCCCeEEec
Confidence 34566788999999999999999999999999999999987554 3433 38999999999999994 899999
Q ss_pred eCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEe
Q 000602 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1398)
Q Consensus 325 s~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~ 403 (1398)
+.|..+++||+ +|.....+....+..+.+++|.|||..+++|+.|+++..||++|..+...++..
T Consensus 288 g~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg~~~V~Gs~dr~i~~wdlDgn~~~~W~gvr-------------- 353 (519)
T KOG0293|consen 288 GFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDGFRFVTGSPDRTIIMWDLDGNILGNWEGVR-------------- 353 (519)
T ss_pred CchHheeeccCCcchhhhhcccCcCCCcceeEEccCCceeEecCCCCcEEEecCCcchhhcccccc--------------
Confidence 99999999999 787776665443447999999999999999999999999999887654444322
Q ss_pred eeCCCccceeeccCCCCcEEEEEEecCCeEEE-EEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCC
Q 000602 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1398)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1398)
...|.+++..+||+.++ .+.+..+..+ +......+.+ ..+..+|....+ +.
T Consensus 354 ---------------~~~v~dlait~Dgk~vl~v~~d~~i~l~---~~e~~~dr~l--ise~~~its~~i--------S~ 405 (519)
T KOG0293|consen 354 ---------------DPKVHDLAITYDGKYVLLVTVDKKIRLY---NREARVDRGL--ISEEQPITSFSI--------SK 405 (519)
T ss_pred ---------------cceeEEEEEcCCCcEEEEEecccceeee---chhhhhhhcc--ccccCceeEEEE--------cC
Confidence 13588999999996554 4566666644 3332221112 233567777777 46
Q ss_pred CCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEec-CCCcEEEEEcCCCcEEEEecCCCCCcccc
Q 000602 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKS-LGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1398)
Q Consensus 483 ~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s-~d~~~L~s~s~dg~I~iWdi~~~~~~~~~ 561 (1398)
+++++++.-.+..+.+||+....... .+..++.+..+. --||. .+..++++|+.|+.|+||+...+.
T Consensus 406 d~k~~LvnL~~qei~LWDl~e~~lv~------kY~Ghkq~~fiI-rSCFgg~~~~fiaSGSED~kvyIWhr~sgk----- 473 (519)
T KOG0293|consen 406 DGKLALVNLQDQEIHLWDLEENKLVR------KYFGHKQGHFII-RSCFGGGNDKFIASGSEDSKVYIWHRISGK----- 473 (519)
T ss_pred CCcEEEEEcccCeeEEeecchhhHHH------HhhcccccceEE-EeccCCCCcceEEecCCCceEEEEEccCCc-----
Confidence 67889999999999999998554332 223333333222 24554 355889999999999999987653
Q ss_pred ccCccceeeeeeeeccccCCcEEEEEeecC-CCEEEEecCCCeEEEEECCC
Q 000602 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFE-DEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 562 ~~~~~~~l~l~~~~~~~h~~~Itsla~Spd-g~lLatGs~dGtI~Iwd~~~ 611 (1398)
+.+. ..+|...|+|++|+|. -.++|+|+.||+|+||...+
T Consensus 474 ---------ll~~-LsGHs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~ 514 (519)
T KOG0293|consen 474 ---------LLAV-LSGHSKTVNCVSWNPADPEMFASASDDGTIRIWGPSD 514 (519)
T ss_pred ---------eeEe-ecCCcceeeEEecCCCCHHHhhccCCCCeEEEecCCc
Confidence 3333 4699999999999995 57999999999999998764
|
|
| >KOG0266 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=1.4e-23 Score=256.84 Aligned_cols=280 Identities=19% Similarity=0.299 Sum_probs=227.2
Q ss_pred EEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEE
Q 000602 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1398)
Q Consensus 58 ~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~ 136 (1398)
..+..++...|.++.|+ |+| ..++++ .++.+++|+..... ..+.+.+.+|...|.
T Consensus 152 ~~~~~~~~~sv~~~~fs-------~~g----~~l~~~~~~~~i~~~~~~~~~-------------~~~~~~l~~h~~~v~ 207 (456)
T KOG0266|consen 152 QTLAGHECPSVTCVDFS-------PDG----RALAAASSDGLIRIWKLEGIK-------------SNLLRELSGHTRGVS 207 (456)
T ss_pred eeecccccCceEEEEEc-------CCC----CeEEEccCCCcEEEeeccccc-------------chhhcccccccccee
Confidence 33444445579999999 998 345554 59999999995421 025666789999999
Q ss_pred EEEEEeecCCCcEEEEEECCCeEEEEEc-CCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCc
Q 000602 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (1398)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~Dg~V~vWd~-~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~ 215 (1398)
+++|+| ++.++++++.|++|+|||+ ..+..++.+.+|.. .+++++| ++++.++++|+.|++|++||++
T Consensus 208 ~~~fs~---d~~~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~-~v~~~~f---~p~g~~i~Sgs~D~tvriWd~~---- 276 (456)
T KOG0266|consen 208 DVAFSP---DGSYLLSGSDDKTLRIWDLKDDGRNLKTLKGHST-YVTSVAF---SPDGNLLVSGSDDGTVRIWDVR---- 276 (456)
T ss_pred eeEECC---CCcEEEEecCCceEEEeeccCCCeEEEEecCCCC-ceEEEEe---cCCCCEEEEecCCCcEEEEecc----
Confidence 999999 9999999999999999999 55688889987665 4688888 7888999999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCC
Q 000602 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1398)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~ 295 (1398)
.++++..+.+|.+.|.+++|++++.+|++++.|+.|++||+.++..
T Consensus 277 -----------------------------~~~~~~~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~----- 322 (456)
T KOG0266|consen 277 -----------------------------TGECVRKLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSK----- 322 (456)
T ss_pred -----------------------------CCeEEEeeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCce-----
Confidence 6788999999999999999999999999999999999999999873
Q ss_pred ceEeeeeEEecCCcc--EEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCc--cEEEEEEcCCCCEEEEEEc
Q 000602 296 IEEVGSSVLYGHNAR--VWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR--GIWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 296 ~~~i~~~~~~gh~~~--V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~--~V~sl~~spdg~~latgg~ 368 (1398)
. .+ ..+.++... +++++|+ +.+++++..|+++++||+ .+..+..+.+|... .+.+..+++.+.++++|+.
T Consensus 323 ~-~~--~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~~~w~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~ 399 (456)
T KOG0266|consen 323 L-CL--KLLSGAENSAPVTSVQFSPNGKYLLSASLDRTLKLWDLRSGKSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSE 399 (456)
T ss_pred e-ee--ecccCCCCCCceeEEEECCCCcEEEEecCCCeEEEEEccCCcceeeecccCCcceeEecccccCCCCeEEEEeC
Confidence 1 01 144555554 8999998 689999999999999999 78999999999874 3444456788999999999
Q ss_pred CCcEEEEEcC-CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc
Q 000602 369 DSAIKVHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1398)
Q Consensus 369 Dg~I~iwdl~-~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~ 438 (1398)
|+.|++|++. +..++.+++|. ...+..+++++...+++...
T Consensus 400 d~~v~~~~~~s~~~~~~l~~h~-----------------------------~~~~~~~~~~~~~~~~~s~s 441 (456)
T KOG0266|consen 400 DGSVYVWDSSSGGILQRLEGHS-----------------------------KAAVSDLSSHPTENLIASSS 441 (456)
T ss_pred CceEEEEeCCccchhhhhcCCC-----------------------------CCceeccccCCCcCeeeecC
Confidence 9999999995 44444444441 34567777888777777654
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.93 E-value=8.7e-24 Score=257.08 Aligned_cols=276 Identities=23% Similarity=0.373 Sum_probs=238.3
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEE-EEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~-~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
+...+++..|. + .++.+|+ +++|++||..++..+.. +.+|.+ .|+++++. ..+ .++++
T Consensus 207 ~~~~~~~~q~~--~------~~~~~~s~~~tl~~~~~~~~~~i~~~l~GH~g-~V~~l~~~-------~~~----~~lvs 266 (537)
T KOG0274|consen 207 DDHVVLCLQLH--D------GFFKSGSDDSTLHLWDLNNGYLILTRLVGHFG-GVWGLAFP-------SGG----DKLVS 266 (537)
T ss_pred Ccchhhhheee--c------CeEEecCCCceeEEeecccceEEEeeccCCCC-CceeEEEe-------cCC----CEEEE
Confidence 35567888887 4 4888888 69999999999998888 999887 79999997 433 45555
Q ss_pred Ec-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 94 ~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
++ |+++++||..+ +.+.+.+.+|.+.|.++...+ .++++|+.|.+|++|++.++..+..
T Consensus 267 gS~D~t~rvWd~~s---------------g~C~~~l~gh~stv~~~~~~~-----~~~~sgs~D~tVkVW~v~n~~~l~l 326 (537)
T KOG0274|consen 267 GSTDKTERVWDCST---------------GECTHSLQGHTSSVRCLTIDP-----FLLVSGSRDNTVKVWDVTNGACLNL 326 (537)
T ss_pred EecCCcEEeEecCC---------------CcEEEEecCCCceEEEEEccC-----ceEeeccCCceEEEEeccCcceEEE
Confidence 54 99999999876 778999999999999999865 6788899999999999999999999
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+.+ +...+.++.+ ++.++++|+.|++|++||+. +++++..+
T Consensus 327 ~~~-h~~~V~~v~~-----~~~~lvsgs~d~~v~VW~~~---------------------------------~~~cl~sl 367 (537)
T KOG0274|consen 327 LRG-HTGPVNCVQL-----DEPLLVSGSYDGTVKVWDPR---------------------------------TGKCLKSL 367 (537)
T ss_pred ecc-ccccEEEEEe-----cCCEEEEEecCceEEEEEhh---------------------------------hceeeeee
Confidence 887 5556788866 47899999999999999998 78999999
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC-cccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE-YWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCR 331 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~-~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~ 331 (1398)
.||.+.|.++.+.+. ..+++|+.|++|++||+.+. ++ + .++.+|..-+.++.+.+++|++++.|++|+
T Consensus 368 ~gH~~~V~sl~~~~~-~~~~Sgs~D~~IkvWdl~~~~~c-----~-----~tl~~h~~~v~~l~~~~~~Lvs~~aD~~Ik 436 (537)
T KOG0274|consen 368 SGHTGRVYSLIVDSE-NRLLSGSLDTTIKVWDLRTKRKC-----I-----HTLQGHTSLVSSLLLRDNFLVSSSADGTIK 436 (537)
T ss_pred cCCcceEEEEEecCc-ceEEeeeeccceEeecCCchhhh-----h-----hhhcCCcccccccccccceeEeccccccEE
Confidence 999999999988766 89999999999999999998 66 3 388999999999999999999999999999
Q ss_pred EEcC-CCceEEEEec-ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCccc
Q 000602 332 VWGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGS 384 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~-h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~ 384 (1398)
+||. +++++.++.+ |.+ +|+++++. ...+++++.||++++||+. +.+.+.
T Consensus 437 ~WD~~~~~~~~~~~~~~~~-~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~ 489 (537)
T KOG0274|consen 437 LWDAEEGECLRTLEGRHVG-GVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRT 489 (537)
T ss_pred EeecccCceeeeeccCCcc-cEEEeecC--cceEEEEecCCeeEEEecccCchhhh
Confidence 9999 8999999999 556 68888876 4578999999999999994 444433
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.1e-23 Score=228.69 Aligned_cols=282 Identities=19% Similarity=0.264 Sum_probs=221.9
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|...|.+|... .+.+++|+ ||.++|||. .|+.+.++.+|.+ +|..+++.- ++.. ...++++
T Consensus 104 hdDWVSsv~~~--------~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~-~ik~v~~v~------~n~~--~~~fvsa 165 (423)
T KOG0313|consen 104 HDDWVSSVKGA--------SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTG-PIKSVAWVI------KNSS--SCLFVSA 165 (423)
T ss_pred chhhhhhhccc--------CceEEEeecCCeeEEEec-CCceEEEEecCCc-ceeeeEEEe------cCCc--cceEEEe
Confidence 66677777766 46899988 999999995 6788889998776 899888761 2210 1345555
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC------
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS------ 167 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~------ 167 (1398)
+ |+++++|.++.+.. ..+.++.-.||...|-+|...+ +|..+++|+.|.+|.||+..+.
T Consensus 166 s~Dqtl~Lw~~~~~~~-----------~~~~~~~~~GHk~~V~sVsv~~---sgtr~~SgS~D~~lkiWs~~~~~~~~~E 231 (423)
T KOG0313|consen 166 SMDQTLRLWKWNVGEN-----------KVKALKVCRGHKRSVDSVSVDS---SGTRFCSGSWDTMLKIWSVETDEEDELE 231 (423)
T ss_pred cCCceEEEEEecCchh-----------hhhHHhHhcccccceeEEEecC---CCCeEEeecccceeeecccCCCcccccc
Confidence 5 99999999986441 1344455569999999999999 9999999999999999993211
Q ss_pred -------------------eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCC
Q 000602 168 -------------------SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 168 -------------------~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
.++..+.+|. ..+.++.| + +...+++++.|.+|+.||+.
T Consensus 232 ~~s~~rrk~~~~~~~~~~r~P~vtl~GHt-~~Vs~V~w---~-d~~v~yS~SwDHTIk~WDle----------------- 289 (423)
T KOG0313|consen 232 SSSNRRRKKQKREKEGGTRTPLVTLEGHT-EPVSSVVW---S-DATVIYSVSWDHTIKVWDLE----------------- 289 (423)
T ss_pred ccchhhhhhhhhhhcccccCceEEecccc-cceeeEEE---c-CCCceEeecccceEEEEEee-----------------
Confidence 1223333443 34666666 2 36789999999999999999
Q ss_pred CCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~ 308 (1398)
.+..+.++.+ ...++++.++|..++|++|+.|+.+|+||.+++.- ..+. ..+.||.
T Consensus 290 ----------------tg~~~~~~~~-~ksl~~i~~~~~~~Ll~~gssdr~irl~DPR~~~g------s~v~-~s~~gH~ 345 (423)
T KOG0313|consen 290 ----------------TGGLKSTLTT-NKSLNCISYSPLSKLLASGSSDRHIRLWDPRTGDG------SVVS-QSLIGHK 345 (423)
T ss_pred ----------------cccceeeeec-CcceeEeecccccceeeecCCCCceeecCCCCCCC------ceeE-Eeeecch
Confidence 4445555543 56789999999999999999999999999998743 1222 4889999
Q ss_pred ccEEEEEEcC---CEEEEEeCCCcEEEEcC-CCc-eEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 309 ARVWDCCLTD---SFIITAGEDCTCRVWGS-DGK-QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 309 ~~V~~l~~s~---~~l~sgs~Dg~i~vWd~-~g~-~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
..|.++.|++ .+|++++.|+++++||+ ..+ ++..+.+|..+ |.++.|. ++..|++||.|.+++|+.-
T Consensus 346 nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plydI~~h~DK-vl~vdW~-~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 346 NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYDIAGHNDK-VLSVDWN-EGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCcceeeccCCce-EEEEecc-CCceEEeccCcceEEEecc
Confidence 9999999984 78999999999999999 444 89999999885 9999998 4669999999999999875
|
|
| >PLN00181 protein SPA1-RELATED; Provisional | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.7e-22 Score=265.56 Aligned_cols=319 Identities=15% Similarity=0.214 Sum_probs=233.7
Q ss_pred CCcEEEEECCCCeEEEEEEe----eeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCc
Q 000602 43 GSQVLLYDLEAGTLIRPFQV----FHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPE 117 (1398)
Q Consensus 43 dg~I~Iwd~~tg~~l~~~~~----~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~ 117 (1398)
+|.+++|+..+.+....++. .+...|.+++|+ |+| .++++++ |+.|+||++.........
T Consensus 457 ~gl~~~~~~~~~~~~~~~~~~~~~~~~~~V~~i~fs-------~dg----~~latgg~D~~I~iwd~~~~~~~~~~---- 521 (793)
T PLN00181 457 EGLCKYLSFSKLRVKADLKQGDLLNSSNLVCAIGFD-------RDG----EFFATAGVNKKIKIFECESIIKDGRD---- 521 (793)
T ss_pred hhhhhhhcccceEEEEeeccccccCCCCcEEEEEEC-------CCC----CEEEEEeCCCEEEEEECCcccccccc----
Confidence 46788888877655444332 134579999999 988 5666665 999999998642100000
Q ss_pred ccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE
Q 000602 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1398)
Q Consensus 118 ~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la 197 (1398)
.......+. +...|.+++|+| .++.+|++++.|++|++||+.+++.+..+..|.. .++++.|.+ .++.+|+
T Consensus 522 ---~~~~~~~~~-~~~~v~~l~~~~--~~~~~las~~~Dg~v~lWd~~~~~~~~~~~~H~~-~V~~l~~~p--~~~~~L~ 592 (793)
T PLN00181 522 ---IHYPVVELA-SRSKLSGICWNS--YIKSQVASSNFEGVVQVWDVARSQLVTEMKEHEK-RVWSIDYSS--ADPTLLA 592 (793)
T ss_pred ---cccceEEec-ccCceeeEEecc--CCCCEEEEEeCCCeEEEEECCCCeEEEEecCCCC-CEEEEEEcC--CCCCEEE
Confidence 011122333 346899999987 2578999999999999999999988888876654 578888732 3678999
Q ss_pred EEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEc-CCCCEEEEEEC
Q 000602 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS-SCGSKLVSVSD 276 (1398)
Q Consensus 198 sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafs-pdg~~LaS~s~ 276 (1398)
+|+.|+.|++||+. .+..+..+..| ..|.++.|+ +++.+|++|+.
T Consensus 593 Sgs~Dg~v~iWd~~---------------------------------~~~~~~~~~~~-~~v~~v~~~~~~g~~latgs~ 638 (793)
T PLN00181 593 SGSDDGSVKLWSIN---------------------------------QGVSIGTIKTK-ANICCVQFPSESGRSLAFGSA 638 (793)
T ss_pred EEcCCCEEEEEECC---------------------------------CCcEEEEEecC-CCeEEEEEeCCCCCEEEEEeC
Confidence 99999999999998 44556666644 679999995 57899999999
Q ss_pred CCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcCC-------CceEEEEecccC
Q 000602 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSD-------GKQLKMIKEHIG 348 (1398)
Q Consensus 277 Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~~-------g~~l~~l~~h~~ 348 (1398)
|+.|++||+...+.. . ..+.+|...|.++.|. +.+|++++.|++|++||+. .+.+..+.+|..
T Consensus 639 dg~I~iwD~~~~~~~----~-----~~~~~h~~~V~~v~f~~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~ 709 (793)
T PLN00181 639 DHKVYYYDLRNPKLP----L-----CTMIGHSKTVSYVRFVDSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTN 709 (793)
T ss_pred CCeEEEEECCCCCcc----c-----eEecCCCCCEEEEEEeCCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCC
Confidence 999999999875421 1 2667999999999997 6899999999999999983 256788999988
Q ss_pred ccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCcc-ceeeccCCCCcEEEEEE
Q 000602 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSE-QIRLTDSKSEYVRCLHL 427 (1398)
Q Consensus 349 ~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~V~~laf 427 (1398)
.+..++|+|++.+|++|+.|+.|++|+...... ++......... .-.....+...|++++|
T Consensus 710 -~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~-----------------~~s~~~~~~~~~~~~~~~~~~~~V~~v~w 771 (793)
T PLN00181 710 -VKNFVGLSVSDGYIATGSETNEVFVYHKAFPMP-----------------VLSYKFKTIDPVSGLEVDDASQFISSVCW 771 (793)
T ss_pred -CeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCc-----------------eEEEecccCCcccccccCCCCcEEEEEEE
Confidence 699999999999999999999999999742210 00100000000 00012345568999999
Q ss_pred ecCCeEEEE-EcCCcEEEEE
Q 000602 428 TSEDTLYIA-TNHGYLYHTK 446 (1398)
Q Consensus 428 s~dg~llv~-t~~g~i~~~~ 446 (1398)
++++..+++ +.+|.|..|.
T Consensus 772 s~~~~~lva~~~dG~I~i~~ 791 (793)
T PLN00181 772 RGQSSTLVAANSTGNIKILE 791 (793)
T ss_pred cCCCCeEEEecCCCcEEEEe
Confidence 999966555 5678777554
|
|
| >KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.1e-23 Score=219.05 Aligned_cols=288 Identities=15% Similarity=0.206 Sum_probs=226.0
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC-eEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~-~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
.++..+.+|.+.|+.+.|+| +|.+||+|+.|..|.+|++... +-...+++|.+ .+..+.+ ..|+..|++++.
T Consensus 38 ap~m~l~gh~geI~~~~F~P---~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsg-AVM~l~~---~~d~s~i~S~gt 110 (338)
T KOG0265|consen 38 APIMLLPGHKGEIYTIKFHP---DGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSG-AVMELHG---MRDGSHILSCGT 110 (338)
T ss_pred chhhhcCCCcceEEEEEECC---CCCeEeecCCcceEEEEeccccccceeeeccccc-eeEeeee---ccCCCEEEEecC
Confidence 45567789999999999999 9999999999999999997543 33455555544 4667766 788999999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeE
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (1398)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V 280 (1398)
|.+|+.||.+ +++.+..+++|.+.|+++.-+.-| .++.|+++||++
T Consensus 111 Dk~v~~wD~~---------------------------------tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~ 157 (338)
T KOG0265|consen 111 DKTVRGWDAE---------------------------------TGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTL 157 (338)
T ss_pred CceEEEEecc---------------------------------cceeeehhccccceeeecCccccCCeEEEecCCCceE
Confidence 9999999999 788999999999999999955444 456789999999
Q ss_pred EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEc
Q 000602 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYD 357 (1398)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~s 357 (1398)
++||++.... .........++++.|. ...+++|+-|+.|++||+ .+..+.++.+|.. +|+.+..+
T Consensus 158 kl~D~R~k~~-----------~~t~~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~d~~~~lsGh~D-tIt~lsls 225 (338)
T KOG0265|consen 158 KLWDIRKKEA-----------IKTFENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKNDGLYTLSGHAD-TITGLSLS 225 (338)
T ss_pred EEEeecccch-----------hhccccceeEEEEEecccccceeeccccCceeeeccccCcceEEeecccC-ceeeEEec
Confidence 9999998766 2444456778999997 589999999999999999 8889999999999 79999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCC-----CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCe
Q 000602 358 SLSSLLVTAGFDSAIKVHQFQA-----FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (1398)
Q Consensus 358 pdg~~latgg~Dg~I~iwdl~~-----~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~ 432 (1398)
|+|.++.+-+.|.++++||++. ++++.+.++.-.. ....-..+|+|+++
T Consensus 226 ~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnf--------------------------eknlL~cswsp~~~ 279 (338)
T KOG0265|consen 226 RYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNF--------------------------EKNLLKCSWSPNGT 279 (338)
T ss_pred cCCCccccccccceEEEEEecccCCCCceEEEeecchhhh--------------------------hhhcceeeccCCCC
Confidence 9999999999999999999953 2233333322100 01234557899988
Q ss_pred EEEEEc-CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEE
Q 000602 433 LYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1398)
Q Consensus 433 llv~t~-~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd 500 (1398)
.+.+++ +..+| +|+.........+.+| ...|.++++. |...+|.+++.|.+|++=+
T Consensus 280 ~i~ags~dr~vy---vwd~~~r~~lyklpGh-~gsvn~~~Fh--------p~e~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 280 KITAGSADRFVY---VWDTTSRRILYKLPGH-YGSVNEVDFH--------PTEPIILSCSSDKTIYLGE 336 (338)
T ss_pred ccccccccceEE---EeecccccEEEEcCCc-ceeEEEeeec--------CCCcEEEEeccCceeEeec
Confidence 777665 44555 5666555544555666 5678888884 5578899999999988743
|
|
| >cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto | Back alignment and domain information |
|---|
Probab=99.92 E-value=2.5e-22 Score=229.55 Aligned_cols=282 Identities=20% Similarity=0.336 Sum_probs=225.4
Q ss_pred eecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeE
Q 000602 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1398)
Q Consensus 126 ~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I 205 (1398)
+.+.+|.++|.+++|+| ++++|++++.|+.|++|++.+++....+..+... +..+.+ .+++..+++++.+|.|
T Consensus 3 ~~~~~h~~~i~~~~~~~---~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~-i~~~~~---~~~~~~l~~~~~~~~i 75 (289)
T cd00200 3 RTLKGHTGGVTCVAFSP---DGKLLATGSGDGTIKVWDLETGELLRTLKGHTGP-VRDVAA---SADGTYLASGSSDKTI 75 (289)
T ss_pred hHhcccCCCEEEEEEcC---CCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcc-eeEEEE---CCCCCEEEEEcCCCeE
Confidence 45678999999999999 9999999999999999999988777766655543 345555 5677899999999999
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~ 285 (1398)
++|++. ..+.+..+..|...|.++.|+|+++++++++.|+.+++||+
T Consensus 76 ~i~~~~---------------------------------~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~~ 122 (289)
T cd00200 76 RLWDLE---------------------------------TGECVRTLTGHTSYVSSVAFSPDGRILSSSSRDKTIKVWDV 122 (289)
T ss_pred EEEEcC---------------------------------cccceEEEeccCCcEEEEEEcCCCCEEEEecCCCeEEEEEC
Confidence 999998 44556677889999999999999999999988999999999
Q ss_pred CCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCE
Q 000602 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~ 362 (1398)
.+.+. . ..+..|...|.+++|++ .++++++.|+.+++||+ .++.+..+..|.. .|.++.|+|+++.
T Consensus 123 ~~~~~-----~-----~~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~~~~~~~~~~~-~i~~~~~~~~~~~ 191 (289)
T cd00200 123 ETGKC-----L-----TTLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGKCVATLTGHTG-EVNSVAFSPDGEK 191 (289)
T ss_pred CCcEE-----E-----EEeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccccceeEecCcc-ccceEEECCCcCE
Confidence 86554 2 25567889999999985 67777777999999999 6888888888887 6999999999999
Q ss_pred EEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc-CC
Q 000602 363 LVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HG 440 (1398)
Q Consensus 363 latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~-~g 440 (1398)
+++++.|+.|++||+.. ..+.. +..+...+.+++|++++.+++++. +|
T Consensus 192 l~~~~~~~~i~i~d~~~~~~~~~------------------------------~~~~~~~i~~~~~~~~~~~~~~~~~~~ 241 (289)
T cd00200 192 LLSSSSDGTIKLWDLSTGKCLGT------------------------------LRGHENGVNSVAFSPDGYLLASGSEDG 241 (289)
T ss_pred EEEecCCCcEEEEECCCCceecc------------------------------hhhcCCceEEEEEcCCCcEEEEEcCCC
Confidence 99999999999999953 22111 113445789999999988888877 89
Q ss_pred cEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEE
Q 000602 441 YLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1398)
Q Consensus 441 ~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd 500 (1398)
.+..|++.. ......... +...+.++.+ .+++.++++++.||.+++|+
T Consensus 242 ~i~i~~~~~---~~~~~~~~~-~~~~i~~~~~--------~~~~~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 242 TIRVWDLRT---GECVQTLSG-HTNSVTSLAW--------SPDGKRLASGSADGTIRIWD 289 (289)
T ss_pred cEEEEEcCC---ceeEEEccc-cCCcEEEEEE--------CCCCCEEEEecCCCeEEecC
Confidence 888666543 222222332 3456777777 34568899999999999995
|
|
| >KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5.3e-23 Score=223.25 Aligned_cols=272 Identities=18% Similarity=0.277 Sum_probs=208.8
Q ss_pred CCCCcEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeE----EEEEEeeeCccEE
Q 000602 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL----IRPFQVFHGIRLH 69 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~----l~~~~~~~~~~V~ 69 (1398)
++||++|+||..-.. |.++|.++++.- ++ .....+++++ |.++++|-.+.++. +...++|++ .|.
T Consensus 122 sYDg~~riWd~~Gk~~~~~~Ght~~ik~v~~v~-~n--~~~~~fvsas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~-~V~ 197 (423)
T KOG0313|consen 122 SYDGTSRIWDLKGKSIKTIVGHTGPIKSVAWVI-KN--SSSCLFVSASMDQTLRLWKWNVGENKVKALKVCRGHKR-SVD 197 (423)
T ss_pred ecCCeeEEEecCCceEEEEecCCcceeeeEEEe-cC--CccceEEEecCCceEEEEEecCchhhhhHHhHhccccc-cee
Confidence 579999999987544 899999877752 44 1122455554 99999999887753 344457877 799
Q ss_pred EEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCC-CCCCCC---------cccccceeeeecccCCCcEEEE
Q 000602 70 GISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSP-NSQYQP---------ETCVNLSLVQSLPRLSHWVFDV 138 (1398)
Q Consensus 70 ~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~-~~~~~~---------~~~~~~~~~~~l~~h~~~V~~v 138 (1398)
+|... ++| ..+++++ |.+++||+.+..... .+.+.. ...-...++-++.||.++|.+|
T Consensus 198 sVsv~-------~sg----tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V 266 (423)
T KOG0313|consen 198 SVSVD-------SSG----TRFCSGSWDTMLKIWSVETDEEDELESSSNRRRKKQKREKEGGTRTPLVTLEGHTEPVSSV 266 (423)
T ss_pred EEEec-------CCC----CeEEeecccceeeecccCCCccccccccchhhhhhhhhhhcccccCceEEecccccceeeE
Confidence 99988 888 4555555 999999994432210 011000 0111235677899999999999
Q ss_pred EEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCcccc
Q 000602 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPL 218 (1398)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~ 218 (1398)
.|++ ...+++++.|.+|+.||+.++....++.++. .+.++.+ .+...+|++|+.|..|++||++.+
T Consensus 267 ~w~d----~~v~yS~SwDHTIk~WDletg~~~~~~~~~k--sl~~i~~---~~~~~Ll~~gssdr~irl~DPR~~----- 332 (423)
T KOG0313|consen 267 VWSD----ATVIYSVSWDHTIKVWDLETGGLKSTLTTNK--SLNCISY---SPLSKLLASGSSDRHIRLWDPRTG----- 332 (423)
T ss_pred EEcC----CCceEeecccceEEEEEeecccceeeeecCc--ceeEeec---ccccceeeecCCCCceeecCCCCC-----
Confidence 9985 5678899999999999999999888876654 3566665 567889999999999999999832
Q ss_pred CCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcccCCCCce
Q 000602 219 LNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 219 ~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~-~LaS~s~Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
...-..+.+.||...|.++.|+|... .|+|++.|+++++||++....+ +
T Consensus 333 -------------------------~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~p----l- 382 (423)
T KOG0313|consen 333 -------------------------DGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAP----L- 382 (423)
T ss_pred -------------------------CCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCc----c-
Confidence 13445678999999999999999664 6899999999999999987631 2
Q ss_pred EeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcC
Q 000602 298 EVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~ 335 (1398)
..+.+|...|.++.|. +..|++||.|++++|+..
T Consensus 383 ----ydI~~h~DKvl~vdW~~~~~IvSGGaD~~l~i~~~ 417 (423)
T KOG0313|consen 383 ----YDIAGHNDKVLSVDWNEGGLIVSGGADNKLRIFKG 417 (423)
T ss_pred ----eeeccCCceEEEEeccCCceEEeccCcceEEEecc
Confidence 4888999999999999 679999999999999864
|
|
| >KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.7e-22 Score=206.04 Aligned_cols=251 Identities=19% Similarity=0.235 Sum_probs=207.5
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
.+..+.+.+|.++|+.+.|+- +|++.++++.|.+|++|+...+.++++..++... +..++. +.|...+++|+.
T Consensus 7 tkr~~~l~~~qgaV~avryN~---dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~E-VlD~~~---s~Dnskf~s~Gg 79 (307)
T KOG0316|consen 7 TKRLSILDCAQGAVRAVRYNV---DGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHE-VLDAAL---SSDNSKFASCGG 79 (307)
T ss_pred chhceeecccccceEEEEEcc---CCCEEEEcCCCceEEeecccccceeeeecCCCce-eeeccc---cccccccccCCC
Confidence 345677889999999999999 9999999999999999999999999999877654 334443 567889999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEE
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1398)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~ 281 (1398)
|..+.+||+. +++.++++.||.+.|+.|+|+.+...++|||.|.++|
T Consensus 80 Dk~v~vwDV~---------------------------------TGkv~Rr~rgH~aqVNtV~fNeesSVv~SgsfD~s~r 126 (307)
T KOG0316|consen 80 DKAVQVWDVN---------------------------------TGKVDRRFRGHLAQVNTVRFNEESSVVASGSFDSSVR 126 (307)
T ss_pred CceEEEEEcc---------------------------------cCeeeeecccccceeeEEEecCcceEEEeccccceeE
Confidence 9999999999 8899999999999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCC
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1398)
+||-+.... +++ +.+..-...|.++...+..|++|+.||++|.||+ .|+....+-+| +|+++.|++++
T Consensus 127 ~wDCRS~s~------ePi--Qildea~D~V~Si~v~~heIvaGS~DGtvRtydiR~G~l~sDy~g~---pit~vs~s~d~ 195 (307)
T KOG0316|consen 127 LWDCRSRSF------EPI--QILDEAKDGVSSIDVAEHEIVAGSVDGTVRTYDIRKGTLSSDYFGH---PITSVSFSKDG 195 (307)
T ss_pred EEEcccCCC------Ccc--chhhhhcCceeEEEecccEEEeeccCCcEEEEEeecceeehhhcCC---cceeEEecCCC
Confidence 999988654 223 2566667789999999999999999999999999 77766655554 79999999999
Q ss_pred CEEEEEEcCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEec-CCeEEEEEc
Q 000602 361 SLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATN 438 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl-~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~-dg~llv~t~ 438 (1398)
+..+.++.|+++++.|- .|+.++...+|.. . ++=...++.. +...+.++.
T Consensus 196 nc~La~~l~stlrLlDk~tGklL~sYkGhkn-------~---------------------eykldc~l~qsdthV~sgSE 247 (307)
T KOG0316|consen 196 NCSLASSLDSTLRLLDKETGKLLKSYKGHKN-------M---------------------EYKLDCCLNQSDTHVFSGSE 247 (307)
T ss_pred CEEEEeeccceeeecccchhHHHHHhccccc-------c---------------------eeeeeeeecccceeEEeccC
Confidence 99999999999999998 5677888777762 0 1111222333 334555678
Q ss_pred CCcEEEEEeecCC
Q 000602 439 HGYLYHTKLCDMD 451 (1398)
Q Consensus 439 ~g~i~~~~l~~~~ 451 (1398)
+|.++.|++-+..
T Consensus 248 DG~Vy~wdLvd~~ 260 (307)
T KOG0316|consen 248 DGKVYFWDLVDET 260 (307)
T ss_pred CceEEEEEeccce
Confidence 9999988776544
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=5e-24 Score=237.95 Aligned_cols=287 Identities=16% Similarity=0.189 Sum_probs=227.5
Q ss_pred eEEEEEEeeeCccEEEEEEeccccccCC-CCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCC
Q 000602 55 TLIRPFQVFHGIRLHGISCNFINCTEGS-VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS 132 (1398)
Q Consensus 55 ~~l~~~~~~~~~~V~~i~fs~~~~~~~p-dg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~ 132 (1398)
+.++++.+|.. .|.++.|. | .+ .+|+++| |+.|+||++-. ..++++++.+|+
T Consensus 205 k~~~~~~gH~k-gvsai~~f-------p~~~----hLlLS~gmD~~vklW~vy~--------------~~~~lrtf~gH~ 258 (503)
T KOG0282|consen 205 KLSHNLSGHTK-GVSAIQWF-------PKKG----HLLLSGGMDGLVKLWNVYD--------------DRRCLRTFKGHR 258 (503)
T ss_pred hheeeccCCcc-ccchhhhc-------ccee----eEEEecCCCceEEEEEEec--------------Ccceehhhhcch
Confidence 45677888776 69999999 7 44 6788887 99999999986 268899999999
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEccc
Q 000602 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1398)
Q Consensus 133 ~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~ 212 (1398)
.+|.+++|++ +|..+++++.|+.|++||+++|+++..++. ++..+++.+++.+ ...+++|+.|+.|+.||++
T Consensus 259 k~Vrd~~~s~---~g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cvkf~pd~--~n~fl~G~sd~ki~~wDiR- 330 (503)
T KOG0282|consen 259 KPVRDASFNN---CGTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCVKFHPDN--QNIFLVGGSDKKIRQWDIR- 330 (503)
T ss_pred hhhhhhhccc---cCCeeeeeecceeeeeeccccceEEEEEec--CCCceeeecCCCC--CcEEEEecCCCcEEEEecc-
Confidence 9999999999 999999999999999999999999988864 4568888885442 4889999999999999999
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
.++.++.+..|-+.|..+.|-++|++++|.++|++++||+...+..
T Consensus 331 --------------------------------s~kvvqeYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~-- 376 (503)
T KOG0282|consen 331 --------------------------------SGKVVQEYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP-- 376 (503)
T ss_pred --------------------------------chHHHHHHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc--
Confidence 6667778888999999999999999999999999999999988654
Q ss_pred CCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-C---CceEEEEecccCcc-EEEEEEcCCCCEEEEEE
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D---GKQLKMIKEHIGRG-IWRCLYDSLSSLLVTAG 367 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~---g~~l~~l~~h~~~~-V~sl~~spdg~~latgg 367 (1398)
++.+ .....|+.+...+.-.+++++.-+.|..+.++.+ . ....+.|.+|...+ -..+.|||||.+|++|.
T Consensus 377 ---ik~i--~~~~~hsmP~~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGd 451 (503)
T KOG0282|consen 377 ---IKNI--ADPEMHTMPCLTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGD 451 (503)
T ss_pred ---chhh--cchhhccCcceecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeec
Confidence 2322 1333455554444334689999999999999987 2 23345677885422 34688999999999999
Q ss_pred cCCcEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC--eEEEEEcCCcEEE
Q 000602 368 FDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED--TLYIATNHGYLYH 444 (1398)
Q Consensus 368 ~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg--~llv~t~~g~i~~ 444 (1398)
.||.+.+||.+. +++. .+..|.+.+..+.|.|.. .++.++=+|.|..
T Consensus 452 sdG~v~~wdwkt~kl~~------------------------------~lkah~~~ci~v~wHP~e~Skvat~~w~G~Iki 501 (503)
T KOG0282|consen 452 SDGKVNFWDWKTTKLVS------------------------------KLKAHDQPCIGVDWHPVEPSKVATCGWDGLIKI 501 (503)
T ss_pred CCccEEEeechhhhhhh------------------------------ccccCCcceEEEEecCCCcceeEecccCceeEe
Confidence 999999999953 2222 344566778888999855 3444445676663
|
|
| >KOG0282 consensus mRNA splicing factor [Function unknown] | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.5e-23 Score=234.09 Aligned_cols=256 Identities=17% Similarity=0.253 Sum_probs=208.8
Q ss_pred CCCCcEEEEeCCcCe--------eccceEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEEEeeeCccEEEE
Q 000602 1 MGKKDLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~--------h~~~Vtalafs~~pd~~~~g~lLaag-~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i 71 (1398)
+-|+.|.||++-... |..+|.+++|+ ++ |.-++++ .|++|++||+++|+++..|.. +..+.++
T Consensus 234 gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s--~~----g~~fLS~sfD~~lKlwDtETG~~~~~f~~--~~~~~cv 305 (503)
T KOG0282|consen 234 GMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFN--NC----GTSFLSASFDRFLKLWDTETGQVLSRFHL--DKVPTCV 305 (503)
T ss_pred CCCceEEEEEEecCcceehhhhcchhhhhhhhcc--cc----CCeeeeeecceeeeeeccccceEEEEEec--CCCceee
Confidence 458999999988732 88999999999 87 5555554 499999999999999988874 4479999
Q ss_pred EEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 72 ~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
.|+ |++. ..+|+...|+.|+.||+.. .+.++.+..|-+.|+++.|.+ +|.+++
T Consensus 306 kf~-------pd~~--n~fl~G~sd~ki~~wDiRs---------------~kvvqeYd~hLg~i~~i~F~~---~g~rFi 358 (503)
T KOG0282|consen 306 KFH-------PDNQ--NIFLVGGSDKKIRQWDIRS---------------GKVVQEYDRHLGAILDITFVD---EGRRFI 358 (503)
T ss_pred ecC-------CCCC--cEEEEecCCCcEEEEeccc---------------hHHHHHHHhhhhheeeeEEcc---CCceEe
Confidence 999 7762 1444445599999999986 567888889999999999999 999999
Q ss_pred EEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCC
Q 000602 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 152 tgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
+.+.|++++||+...+..+..+..+..-..-++.. .|++.++++-+.|+.|.++....
T Consensus 359 ssSDdks~riWe~~~~v~ik~i~~~~~hsmP~~~~---~P~~~~~~aQs~dN~i~ifs~~~------------------- 416 (503)
T KOG0282|consen 359 SSSDDKSVRIWENRIPVPIKNIADPEMHTMPCLTL---HPNGKWFAAQSMDNYIAIFSTVP------------------- 416 (503)
T ss_pred eeccCccEEEEEcCCCccchhhcchhhccCcceec---CCCCCeehhhccCceEEEEeccc-------------------
Confidence 99999999999999887766555444333333444 68899999999999999999761
Q ss_pred CCcceeeecccccceeEEEEEeCcc--CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCc
Q 000602 232 SDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1398)
Q Consensus 232 ~~~~~i~i~~~~~~~~~~~~l~gH~--~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~ 309 (1398)
.........+.||. +.-..+.|||||++|+||+.||.+.+||..+-+. + ..+..|+.
T Consensus 417 -----------~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-----~-----~~lkah~~ 475 (503)
T KOG0282|consen 417 -----------PFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-----V-----SKLKAHDQ 475 (503)
T ss_pred -----------ccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-----h-----hccccCCc
Confidence 11223345577885 5567789999999999999999999999998766 3 37889999
Q ss_pred cEEEEEEcC---CEEEEEeCCCcEEEEc
Q 000602 310 RVWDCCLTD---SFIITAGEDCTCRVWG 334 (1398)
Q Consensus 310 ~V~~l~~s~---~~l~sgs~Dg~i~vWd 334 (1398)
.+..+.|+| +.++||+.||.|++|+
T Consensus 476 ~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 476 PCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred ceEEEEecCCCcceeEecccCceeEecC
Confidence 999999994 8999999999999997
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=9e-23 Score=211.91 Aligned_cols=279 Identities=15% Similarity=0.167 Sum_probs=222.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|+.|++-|.|+ .+ |.+|+++. |.+..||-..+|+.+.++.+|.+ .|+++++. -+. ..++..+
T Consensus 9 HERplTqiKyN--~e----GDLlFscaKD~~~~vw~s~nGerlGty~GHtG-avW~~Did-------~~s---~~liTGS 71 (327)
T KOG0643|consen 9 HERPLTQIKYN--RE----GDLLFSCAKDSTPTVWYSLNGERLGTYDGHTG-AVWCCDID-------WDS---KHLITGS 71 (327)
T ss_pred CccccceEEec--CC----CcEEEEecCCCCceEEEecCCceeeeecCCCc-eEEEEEec-------CCc---ceeeecc
Confidence 89999999999 77 89999999 89999999999999999999988 79999998 554 1455555
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-----CCCeEEEEEcC----
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDIS---- 165 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-----~Dg~V~vWd~~---- 165 (1398)
+|.+++|||+++ ++.+..++ ...+|..+.|++ +|.+++... ..+.|.++|++
T Consensus 72 AD~t~kLWDv~t---------------Gk~la~~k-~~~~Vk~~~F~~---~gn~~l~~tD~~mg~~~~v~~fdi~~~~~ 132 (327)
T KOG0643|consen 72 ADQTAKLWDVET---------------GKQLATWK-TNSPVKRVDFSF---GGNLILASTDKQMGYTCFVSVFDIRDDSS 132 (327)
T ss_pred ccceeEEEEcCC---------------CcEEEEee-cCCeeEEEeecc---CCcEEEEEehhhcCcceEEEEEEccCChh
Confidence 699999999997 56666665 567899999999 888776654 35579999997
Q ss_pred ---CCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000602 166 ---NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1398)
Q Consensus 166 ---~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1398)
..++...+..+... +.++.| ++-+..|++|..||.|.+||+++
T Consensus 133 ~~~s~ep~~kI~t~~sk-it~a~W---g~l~~~ii~Ghe~G~is~~da~~------------------------------ 178 (327)
T KOG0643|consen 133 DIDSEEPYLKIPTPDSK-ITSALW---GPLGETIIAGHEDGSISIYDART------------------------------ 178 (327)
T ss_pred hhcccCceEEecCCccc-eeeeee---cccCCEEEEecCCCcEEEEEccc------------------------------
Confidence 34456777777644 334444 67899999999999999999982
Q ss_pred ccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CE
Q 000602 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SF 320 (1398)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~ 320 (1398)
..+.+..-..|+..|+.+.++||..+++++|.|.+.++||+.+-.. + ..+.-..+|.+++++| ..
T Consensus 179 --g~~~v~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v-----~------Kty~te~PvN~aaisP~~d~ 245 (327)
T KOG0643|consen 179 --GKELVDSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEV-----L------KTYTTERPVNTAAISPLLDH 245 (327)
T ss_pred --CceeeechhhhccccccccccCCcceEEecccCccceeeeccceee-----E------EEeeecccccceecccccce
Confidence 2345556678999999999999999999999999999999998655 1 3344567889999985 45
Q ss_pred EEEEeCCCc--------------EEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 321 IITAGEDCT--------------CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 321 l~sgs~Dg~--------------i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
++.|+.... .|.|++ -.+.+..+++|-+ +|++++|+|+|+..++||.||.||++-+.
T Consensus 246 VilgGGqeA~dVTTT~~r~GKFEArFyh~i~eEEigrvkGHFG-PINsvAfhPdGksYsSGGEDG~VR~h~Fd 317 (327)
T KOG0643|consen 246 VILGGGQEAMDVTTTSTRAGKFEARFYHLIFEEEIGRVKGHFG-PINSVAFHPDGKSYSSGGEDGYVRLHHFD 317 (327)
T ss_pred EEecCCceeeeeeeecccccchhhhHHHHHHHHHhcccccccc-CcceeEECCCCcccccCCCCceEEEEEec
Confidence 555543222 122222 2345778899999 79999999999999999999999999774
|
|
| >KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.90 E-value=8.6e-22 Score=239.71 Aligned_cols=273 Identities=22% Similarity=0.323 Sum_probs=223.0
Q ss_pred eCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeee-cccCCCcEEEEEEEe
Q 000602 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQS-LPRLSHWVFDVCFLK 142 (1398)
Q Consensus 64 ~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~-l~~h~~~V~~v~fsp 142 (1398)
+...+.+..|. .+ .++....++++++|+... ...+.. +.||.+.|++++|..
T Consensus 207 ~~~~~~~~q~~-------~~-----~~~~~s~~~tl~~~~~~~---------------~~~i~~~l~GH~g~V~~l~~~~ 259 (537)
T KOG0274|consen 207 DDHVVLCLQLH-------DG-----FFKSGSDDSTLHLWDLNN---------------GYLILTRLVGHFGGVWGLAFPS 259 (537)
T ss_pred Ccchhhhheee-------cC-----eEEecCCCceeEEeeccc---------------ceEEEeeccCCCCCceeEEEec
Confidence 33356666665 32 455556689999999986 445555 999999999999986
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCC
Q 000602 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 143 ~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~ 222 (1398)
.+.+|++|+.|.++++||..+|++...+.++.. .+.++.. ...++++|+.|.+|++|++.
T Consensus 260 ---~~~~lvsgS~D~t~rvWd~~sg~C~~~l~gh~s-tv~~~~~-----~~~~~~sgs~D~tVkVW~v~----------- 319 (537)
T KOG0274|consen 260 ---GGDKLVSGSTDKTERVWDCSTGECTHSLQGHTS-SVRCLTI-----DPFLLVSGSRDNTVKVWDVT----------- 319 (537)
T ss_pred ---CCCEEEEEecCCcEEeEecCCCcEEEEecCCCc-eEEEEEc-----cCceEeeccCCceEEEEecc-----------
Confidence 789999999999999999999999999987654 4555543 56688899999999999998
Q ss_pred CCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeee
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~ 302 (1398)
.+..+..+.+|.++|+++..+ +.++++|+.|++|++||+.+.++ + .
T Consensus 320 ----------------------n~~~l~l~~~h~~~V~~v~~~--~~~lvsgs~d~~v~VW~~~~~~c-----l-----~ 365 (537)
T KOG0274|consen 320 ----------------------NGACLNLLRGHTGPVNCVQLD--EPLLVSGSYDGTVKVWDPRTGKC-----L-----K 365 (537)
T ss_pred ----------------------CcceEEEeccccccEEEEEec--CCEEEEEecCceEEEEEhhhcee-----e-----e
Confidence 778889999999999999997 88999999999999999998776 3 3
Q ss_pred EEecCCccEEEEEEcC-CEEEEEeCCCcEEEEcC-CC-ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc-C
Q 000602 303 VLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-Q 378 (1398)
Q Consensus 303 ~~~gh~~~V~~l~~s~-~~l~sgs~Dg~i~vWd~-~g-~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl-~ 378 (1398)
.+.||..+|.++.+.+ +.+++|+.|++|++||+ +. +++.++.+|.. -+..+.+ .+++|++++.|++|++||. +
T Consensus 366 sl~gH~~~V~sl~~~~~~~~~Sgs~D~~IkvWdl~~~~~c~~tl~~h~~-~v~~l~~--~~~~Lvs~~aD~~Ik~WD~~~ 442 (537)
T KOG0274|consen 366 SLSGHTGRVYSLIVDSENRLLSGSLDTTIKVWDLRTKRKCIHTLQGHTS-LVSSLLL--RDNFLVSSSADGTIKLWDAEE 442 (537)
T ss_pred eecCCcceEEEEEecCcceEEeeeeccceEeecCCchhhhhhhhcCCcc-ccccccc--ccceeEeccccccEEEeeccc
Confidence 8899999999999998 99999999999999999 66 69999999988 4766555 5789999999999999998 4
Q ss_pred CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecC
Q 000602 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM 450 (1398)
Q Consensus 379 ~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~ 450 (1398)
+.++++++++ +...|..+++. +..+++++.+|.+..+++...
T Consensus 443 ~~~~~~~~~~-----------------------------~~~~v~~l~~~-~~~il~s~~~~~~~l~dl~~~ 484 (537)
T KOG0274|consen 443 GECLRTLEGR-----------------------------HVGGVSALALG-KEEILCSSDDGSVKLWDLRSG 484 (537)
T ss_pred CceeeeeccC-----------------------------CcccEEEeecC-cceEEEEecCCeeEEEecccC
Confidence 4555554431 22456666665 457888889999886655443
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.9e-22 Score=231.75 Aligned_cols=270 Identities=17% Similarity=0.291 Sum_probs=216.2
Q ss_pred CCCEEEEEe-CCcEEEEECCCC------eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecC
Q 000602 34 SLPFLLAGS-GSQVLLYDLEAG------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1398)
Q Consensus 34 ~g~lLaag~-dg~I~Iwd~~tg------~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~ 106 (1398)
.++||++|+ ||.|++|+.... ..+.+++.|.. -|..|+.. -+|+ .+|.++.|-+|++|+...
T Consensus 36 ~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsD-WVNDiiL~-------~~~~---tlIS~SsDtTVK~W~~~~ 104 (735)
T KOG0308|consen 36 NGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSD-WVNDIILC-------GNGK---TLISASSDTTVKVWNAHK 104 (735)
T ss_pred CCceEEecCCCceEEEeccccccCCcccchhhhhhhhHh-HHhhHHhh-------cCCC---ceEEecCCceEEEeeccc
Confidence 478899988 999999998532 24677776655 78888776 5652 566667799999999985
Q ss_pred CCCCCCCCCCcccccceeeeecccCCCcEEEEEE-EeecCCCcEEEEEECCCeEEEEEcCCCeE--EEE--------Ecc
Q 000602 107 ELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCF-LKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILE--------VHS 175 (1398)
Q Consensus 107 ~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~f-sp~~~dg~~Latgs~Dg~V~vWd~~~~~~--~~~--------l~~ 175 (1398)
.. -.+..++..|.+.|.|+++ -+ +..++|+||-|+.|.+||+.++.. +.+ +..
T Consensus 105 ~~-------------~~c~stir~H~DYVkcla~~ak---~~~lvaSgGLD~~IflWDin~~~~~l~~s~n~~t~~sl~s 168 (735)
T KOG0308|consen 105 DN-------------TFCMSTIRTHKDYVKCLAYIAK---NNELVASGGLDRKIFLWDINTGTATLVASFNNVTVNSLGS 168 (735)
T ss_pred Cc-------------chhHhhhhcccchheeeeeccc---CceeEEecCCCccEEEEEccCcchhhhhhccccccccCCC
Confidence 32 2567788899999999999 55 888999999999999999997732 222 222
Q ss_pred CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 176 ~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
.....+|+++. ++.+..|++|+..+.|++||.+ +.+.+..+.||
T Consensus 169 G~k~siYSLA~---N~t~t~ivsGgtek~lr~wDpr---------------------------------t~~kimkLrGH 212 (735)
T KOG0308|consen 169 GPKDSIYSLAM---NQTGTIIVSGGTEKDLRLWDPR---------------------------------TCKKIMKLRGH 212 (735)
T ss_pred CCccceeeeec---CCcceEEEecCcccceEEeccc---------------------------------cccceeeeecc
Confidence 44567899887 7778899999999999999999 67778889999
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEE
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVW 333 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vW 333 (1398)
+..|..+..++||..++|+|.||+|++||+...++ + .++..|...||++..++ .++++|+.||.|..=
T Consensus 213 TdNVr~ll~~dDGt~~ls~sSDgtIrlWdLgqQrC-----l-----~T~~vH~e~VWaL~~~~sf~~vYsG~rd~~i~~T 282 (735)
T KOG0308|consen 213 TDNVRVLLVNDDGTRLLSASSDGTIRLWDLGQQRC-----L-----ATYIVHKEGVWALQSSPSFTHVYSGGRDGNIYRT 282 (735)
T ss_pred ccceEEEEEcCCCCeEeecCCCceEEeeeccccce-----e-----eeEEeccCceEEEeeCCCcceEEecCCCCcEEec
Confidence 99999999999999999999999999999999887 3 37888999999999986 689999999999999
Q ss_pred cC-CC-ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 334 GS-DG-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 334 d~-~g-~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
|+ +. +....++ ... +|..+..+...+-+-.+..|+.|+-|...
T Consensus 283 dl~n~~~~tlick-~da-Pv~~l~~~~~~~~~WvtTtds~I~rW~~~ 327 (735)
T KOG0308|consen 283 DLRNPAKSTLICK-EDA-PVLKLHLHEHDNSVWVTTTDSSIKRWKLE 327 (735)
T ss_pred ccCCchhheEeec-CCC-chhhhhhccccCCceeeeccccceecCCc
Confidence 98 42 2222222 223 57777777544444667789999999874
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.9e-23 Score=224.97 Aligned_cols=279 Identities=17% Similarity=0.265 Sum_probs=226.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~--~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
|.+.|..+.|- ++ ...|++|+ |..|++|++..++ .+.++.+..+ +|..++|. ++++ ..|+
T Consensus 174 h~gev~~v~~l--~~----sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g-~it~~d~d-------~~~~---~~iA 236 (459)
T KOG0288|consen 174 HEGEVHDVEFL--RN----SDTLATGGSDRIIKLWNVLGEKSELISTLAGSLG-NITSIDFD-------SDNK---HVIA 236 (459)
T ss_pred cccccceeEEc--cC----cchhhhcchhhhhhhhhcccchhhhhhhhhccCC-Ccceeeec-------CCCc---eEEe
Confidence 88999999999 76 57888877 8999999987766 6667776545 79999999 7773 6777
Q ss_pred EEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 93 ~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
.+.|+.+++|+++. .++.++|.||++.|+++.|.- ....+++|+.|.+|++||+....+..+
T Consensus 237 as~d~~~r~Wnvd~---------------~r~~~TLsGHtdkVt~ak~~~---~~~~vVsgs~DRtiK~WDl~k~~C~kt 298 (459)
T KOG0288|consen 237 ASNDKNLRLWNVDS---------------LRLRHTLSGHTDKVTAAKFKL---SHSRVVSGSADRTIKLWDLQKAYCSKT 298 (459)
T ss_pred ecCCCceeeeeccc---------------hhhhhhhcccccceeeehhhc---cccceeeccccchhhhhhhhhhheecc
Confidence 77799999999985 678889999999999999987 555699999999999999999888877
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+.....|.-..+ ....+++|..|++|++||.+ ...+....
T Consensus 299 ~l~~S~cnDI~~-------~~~~~~SgH~DkkvRfwD~R---------------------------------s~~~~~sv 338 (459)
T KOG0288|consen 299 VLPGSQCNDIVC-------SISDVISGHFDKKVRFWDIR---------------------------------SADKTRSV 338 (459)
T ss_pred ccccccccceEe-------cceeeeecccccceEEEecc---------------------------------CCceeeEe
Confidence 765544432221 15578899999999999998 55566666
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i 330 (1398)
..+. .|++|..++++..|.+++.|.++.+.|+++... ..... +.-+.-....+.+.|+ +.|+++|+.||.|
T Consensus 339 ~~gg-~vtSl~ls~~g~~lLsssRDdtl~viDlRt~eI-----~~~~s-A~g~k~asDwtrvvfSpd~~YvaAGS~dgsv 411 (459)
T KOG0288|consen 339 PLGG-RVTSLDLSMDGLELLSSSRDDTLKVIDLRTKEI-----RQTFS-AEGFKCASDWTRVVFSPDGSYVAAGSADGSV 411 (459)
T ss_pred ecCc-ceeeEeeccCCeEEeeecCCCceeeeecccccE-----EEEee-ccccccccccceeEECCCCceeeeccCCCcE
Confidence 6664 999999999999999999999999999998654 22221 1112222346778888 4899999999999
Q ss_pred EEEcC-CCceEEEEecccCc-cEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 331 RVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 331 ~vWd~-~g~~l~~l~~h~~~-~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
+||++ ++++.+.+...... +|++++|+|.|..+++++.++.+.+|.
T Consensus 412 ~iW~v~tgKlE~~l~~s~s~~aI~s~~W~~sG~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 412 YIWSVFTGKLEKVLSLSTSNAAITSLSWNPSGSGLLSADKQKAVTLWT 459 (459)
T ss_pred EEEEccCceEEEEeccCCCCcceEEEEEcCCCchhhcccCCcceEecC
Confidence 99999 88888888766553 599999999999999999999999993
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=6.3e-22 Score=236.19 Aligned_cols=318 Identities=17% Similarity=0.238 Sum_probs=206.7
Q ss_pred eeeeecc-cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 123 SLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 123 ~~~~~l~-~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
...+.+. .|.+.||++.|++ ||+|||+||.|+.|+||.+...+....-.....++...+. ..+..-.+...
T Consensus 257 ~~~Qe~~~ah~gaIw~mKFS~---DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~-----~~s~~~p~~s~ 328 (712)
T KOG0283|consen 257 TVVQEISNAHKGAIWAMKFSH---DGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYN-----ANSQIEPSTSS 328 (712)
T ss_pred EEeeccccccCCcEEEEEeCC---CCceeeecCCCceEEEEEEeccchhcccccccchhhhhhh-----hccccCccccc
Confidence 3455666 8999999999999 9999999999999999998764432111111111111110 00100000000
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEE
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1398)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~ 281 (1398)
.+.+. . ....+-.........+......-..++++.+.||.+.|..|.||.+ ++|+|+|.|++||
T Consensus 329 ~~~~~----------~----~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn-~fLLSSSMDKTVR 393 (712)
T KOG0283|consen 329 EEKIS----------S----RTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN-NFLLSSSMDKTVR 393 (712)
T ss_pred ccccc----------c----cccccccccCCccccCCCccccccccchhhhhccchhheecccccC-CeeEeccccccEE
Confidence 00000 0 0000000000000000001111145788899999999999999975 6899999999999
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcC
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~sp 358 (1398)
||++....+ ...+.|..-|+|++|+ +++|++|+-||.||||++..+.+.....-.. -|++++|.|
T Consensus 394 LWh~~~~~C-----------L~~F~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~W~Dl~~-lITAvcy~P 461 (712)
T KOG0283|consen 394 LWHPGRKEC-----------LKVFSHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVDWNDLRD-LITAVCYSP 461 (712)
T ss_pred eecCCCcce-----------eeEEecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEeehhhhh-hheeEEecc
Confidence 999998887 3778999999999999 4899999999999999996666665555445 699999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc
Q 000602 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1398)
Q Consensus 359 dg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~ 438 (1398)
||++.+.|+.+|.+++|+..+..+++ ..
T Consensus 462 dGk~avIGt~~G~C~fY~t~~lk~~~---------------------------------------~~------------- 489 (712)
T KOG0283|consen 462 DGKGAVIGTFNGYCRFYDTEGLKLVS---------------------------------------DF------------- 489 (712)
T ss_pred CCceEEEEEeccEEEEEEccCCeEEE---------------------------------------ee-------------
Confidence 99999999999999999996422110 00
Q ss_pred CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeec
Q 000602 439 HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA 518 (1398)
Q Consensus 439 ~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~ 518 (1398)
.+++.+.+.. . ...|+.+.+.+.. ...+++.+.|..|+|||..+..++.+.+- ..
T Consensus 490 -----~I~~~~~Kk~--------~-~~rITG~Q~~p~~-------~~~vLVTSnDSrIRI~d~~~~~lv~KfKG----~~ 544 (712)
T KOG0283|consen 490 -----HIRLHNKKKK--------Q-GKRITGLQFFPGD-------PDEVLVTSNDSRIRIYDGRDKDLVHKFKG----FR 544 (712)
T ss_pred -----eEeeccCccc--------c-CceeeeeEecCCC-------CCeEEEecCCCceEEEeccchhhhhhhcc----cc
Confidence 0011111111 1 2256666665432 33678888899999999976665544321 11
Q ss_pred CcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCC
Q 000602 519 GIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1398)
Q Consensus 519 ~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~ 555 (1398)
....++ ...|+.||+++++++.|..|++|+++..
T Consensus 545 n~~SQ~---~Asfs~Dgk~IVs~seDs~VYiW~~~~~ 578 (712)
T KOG0283|consen 545 NTSSQI---SASFSSDGKHIVSASEDSWVYIWKNDSF 578 (712)
T ss_pred cCCcce---eeeEccCCCEEEEeecCceEEEEeCCCC
Confidence 112222 2457789999999999999999998753
|
|
| >KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.89 E-value=3.5e-22 Score=206.24 Aligned_cols=259 Identities=18% Similarity=0.274 Sum_probs=201.9
Q ss_pred CCCcEEEEeCCcCe---------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCC-CeEEEEEEeeeCccEEEE
Q 000602 2 GKKDLSEWRLDVGQ---------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA-GTLIRPFQVFHGIRLHGI 71 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~---------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~t-g~~l~~~~~~~~~~V~~i 71 (1398)
+.|++.|-++..++ -...+..|+|+ +. ....++++.+||.++|||... ..+++.++.|+. .|.++
T Consensus 36 G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Ws--e~--~e~~~~~a~GDGSLrl~d~~~~s~Pi~~~kEH~~-EV~Sv 110 (311)
T KOG0277|consen 36 GNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWS--EN--HENQVIAASGDGSLRLFDLTMPSKPIHKFKEHKR-EVYSV 110 (311)
T ss_pred cCceEEEEecCCCCCeEEEEeeecccceeEeeec--CC--CcceEEEEecCceEEEeccCCCCcchhHHHhhhh-heEEe
Confidence 45677777775332 24568899999 75 223455555689999999643 467888998877 69999
Q ss_pred EEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 72 ~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
.++ +..+ ..+|.++-|++|++|+... ..-++++.||+..|...+|+| ....+++
T Consensus 111 dwn-------~~~r--~~~ltsSWD~TiKLW~~~r---------------~~Sv~Tf~gh~~~Iy~a~~sp--~~~nlfa 164 (311)
T KOG0277|consen 111 DWN-------TVRR--RIFLTSSWDGTIKLWDPNR---------------PNSVQTFNGHNSCIYQAAFSP--HIPNLFA 164 (311)
T ss_pred ccc-------cccc--eeEEeeccCCceEeecCCC---------------CcceEeecCCccEEEEEecCC--CCCCeEE
Confidence 999 4432 2344444499999999875 456778999999999999999 4778999
Q ss_pred EEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCC
Q 000602 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 152 tgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
+++.|+++++||++..-....+..|. ..+.+..|.. -+...|++|+.|+.|++||++
T Consensus 165 s~Sgd~~l~lwdvr~~gk~~~i~ah~-~Eil~cdw~k--y~~~vl~Tg~vd~~vr~wDir-------------------- 221 (311)
T KOG0277|consen 165 SASGDGTLRLWDVRSPGKFMSIEAHN-SEILCCDWSK--YNHNVLATGGVDNLVRGWDIR-------------------- 221 (311)
T ss_pred EccCCceEEEEEecCCCceeEEEecc-ceeEeecccc--cCCcEEEecCCCceEEEEehh--------------------
Confidence 99999999999997644433466665 3455666543 357799999999999999998
Q ss_pred CCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc
Q 000602 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1398)
Q Consensus 232 ~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~ 310 (1398)
.-..++..+.+|.-.|..|+|||.. ..|||++.|-++||||...+... ++ +..-|+.-
T Consensus 222 ------------~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~----~e-----~~~~HtEF 280 (311)
T KOG0277|consen 222 ------------NLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQDSA----IE-----TVDHHTEF 280 (311)
T ss_pred ------------hccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccchhh----hh-----hhhccceE
Confidence 1346788899999999999999954 67899999999999999865431 22 55678888
Q ss_pred EEEEEEc---CCEEEEEeCCCcEEEEcC
Q 000602 311 VWDCCLT---DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 311 V~~l~~s---~~~l~sgs~Dg~i~vWd~ 335 (1398)
+..+.|+ +.++++++-|..+.||+.
T Consensus 281 v~g~Dws~~~~~~vAs~gWDe~l~Vw~p 308 (311)
T KOG0277|consen 281 VCGLDWSLFDPGQVASTGWDELLYVWNP 308 (311)
T ss_pred EeccccccccCceeeecccccceeeecc
Confidence 9999998 799999999999999984
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=218.89 Aligned_cols=280 Identities=17% Similarity=0.259 Sum_probs=225.0
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
...+|++++|| |. .+..+.+ .+.-.+.||+..+...+.++.-|+. .|.++.|. .|| +++|+++
T Consensus 25 e~~~vssl~fs--p~--~P~d~aV-t~S~rvqly~~~~~~~~k~~srFk~-~v~s~~fR-------~DG----~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCFS--PK--HPYDFAV-TSSVRVQLYSSVTRSVRKTFSRFKD-VVYSVDFR-------SDG----RLLAAGD 87 (487)
T ss_pred ccCcceeEecC--CC--CCCceEE-ecccEEEEEecchhhhhhhHHhhcc-ceeEEEee-------cCC----eEEEccC
Confidence 35789999999 86 2223444 4456799999998887777776776 69999999 998 6777777
Q ss_pred -CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 96 -d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.|.|+|||+.+ -..++.+.+|+.+|..+.|+| .++..|++|+.|+.+++||+.+......+.
T Consensus 88 ~sG~V~vfD~k~---------------r~iLR~~~ah~apv~~~~f~~--~d~t~l~s~sDd~v~k~~d~s~a~v~~~l~ 150 (487)
T KOG0310|consen 88 ESGHVKVFDMKS---------------RVILRQLYAHQAPVHVTKFSP--QDNTMLVSGSDDKVVKYWDLSTAYVQAELS 150 (487)
T ss_pred CcCcEEEecccc---------------HHHHHHHhhccCceeEEEecc--cCCeEEEecCCCceEEEEEcCCcEEEEEec
Confidence 69999999653 234667889999999999999 477889999999999999999998766776
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1398)
++.. .+.+..+. +.++..+++|+.||.|++||.+. ....+..+ .
T Consensus 151 ~htD-YVR~g~~~--~~~~hivvtGsYDg~vrl~DtR~--------------------------------~~~~v~el-n 194 (487)
T KOG0310|consen 151 GHTD-YVRCGDIS--PANDHIVVTGSYDGKVRLWDTRS--------------------------------LTSRVVEL-N 194 (487)
T ss_pred CCcc-eeEeeccc--cCCCeEEEecCCCceEEEEEecc--------------------------------CCceeEEe-c
Confidence 6654 35555553 34566899999999999999981 22445555 4
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~v 332 (1398)
|..+|..+.|.|.|..+||++.. .|++||+.++... + .....|...|+|+.+. +..|++++-|+.+++
T Consensus 195 hg~pVe~vl~lpsgs~iasAgGn-~vkVWDl~~G~ql----l-----~~~~~H~KtVTcL~l~s~~~rLlS~sLD~~VKV 264 (487)
T KOG0310|consen 195 HGCPVESVLALPSGSLIASAGGN-SVKVWDLTTGGQL----L-----TSMFNHNKTVTCLRLASDSTRLLSGSLDRHVKV 264 (487)
T ss_pred CCCceeeEEEcCCCCEEEEcCCC-eEEEEEecCCcee----h-----hhhhcccceEEEEEeecCCceEeecccccceEE
Confidence 99999999999999999998876 8999999976541 1 1344599999999997 589999999999999
Q ss_pred EcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
||+ +-+.+..+... + +|.+++++|++..++.|..||.+-+-+.
T Consensus 265 fd~t~~Kvv~s~~~~-~-pvLsiavs~dd~t~viGmsnGlv~~rr~ 308 (487)
T KOG0310|consen 265 FDTTNYKVVHSWKYP-G-PVLSIAVSPDDQTVVIGMSNGLVSIRRR 308 (487)
T ss_pred EEccceEEEEeeecc-c-ceeeEEecCCCceEEEecccceeeeehh
Confidence 998 66777777654 4 6999999999999999999999877644
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=5.3e-22 Score=222.10 Aligned_cols=295 Identities=18% Similarity=0.230 Sum_probs=219.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeeeCccEEEEEEeccccccCCCCccceeE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg----~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
|...|+++++. |. |..+++|+ |.+|++||.... +..+.++.-+...|.+++|+ |.| +.+
T Consensus 166 gtk~Vsal~~D--p~----GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys-------~Tg---~~i 229 (641)
T KOG0772|consen 166 GTKIVSALAVD--PS----GARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYS-------VTG---DQI 229 (641)
T ss_pred CceEEEEeeec--CC----CceeeeccccceEEEEecccccccchhhhccCcccccccceeeec-------CCC---CeE
Confidence 56779999999 88 88999998 999999998643 22333443445579999999 777 489
Q ss_pred EEEEcCCeEEEEEecCCC----CCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC
Q 000602 91 VALFGEKRVKLFELNFEL----SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 91 la~~gd~~V~vwdl~~~~----~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
|+++|....+|+|-+.-. .++.+| ..-+..-+||...++|.+|+|. +...++|++.||++||||+.+
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~~KGDQY-------I~Dm~nTKGHia~lt~g~whP~--~k~~FlT~s~DgtlRiWdv~~ 300 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEFSKGDQY-------IRDMYNTKGHIAELTCGCWHPD--NKEEFLTCSYDGTLRIWDVNN 300 (641)
T ss_pred EEEecCcceeEEccCCceeeeeeccchh-------hhhhhccCCceeeeeccccccC--cccceEEecCCCcEEEEecCC
Confidence 999999999999976311 122222 1223455799999999999992 456788999999999999976
Q ss_pred CeE-EEEEc----cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 167 SSI-ILEVH----SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 167 ~~~-~~~l~----~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
.+. +..++ ...+-.+.+.+| ++++.+||+|+.||.|.+|+....
T Consensus 301 ~k~q~qVik~k~~~g~Rv~~tsC~~---nrdg~~iAagc~DGSIQ~W~~~~~---------------------------- 349 (641)
T KOG0772|consen 301 TKSQLQVIKTKPAGGKRVPVTSCAW---NRDGKLIAAGCLDGSIQIWDKGSR---------------------------- 349 (641)
T ss_pred chhheeEEeeccCCCcccCceeeec---CCCcchhhhcccCCceeeeecCCc----------------------------
Confidence 433 22222 333444555555 899999999999999999997611
Q ss_pred cccceeEEEEEeCccC--CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC-
Q 000602 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~--~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~- 318 (1398)
........-..|.. .|++|+||+||++|+|=+.|.++++||+++.+.. +. + ..-......-+.++|+|
T Consensus 350 --~v~p~~~vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkp----L~-~--~tgL~t~~~~tdc~FSPd 420 (641)
T KOG0772|consen 350 --TVRPVMKVKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKP----LN-V--RTGLPTPFPGTDCCFSPD 420 (641)
T ss_pred --ccccceEeeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccccc----hh-h--hcCCCccCCCCccccCCC
Confidence 11223344567887 9999999999999999999999999999986552 11 0 01112233457788984
Q ss_pred -CEEEEEe------CCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 319 -SFIITAG------EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 319 -~~l~sgs------~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
.+|+||. ..|++.+||. +-..+.++..... .|..+.|+|.=+.|..|+.||++++|-
T Consensus 421 ~kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~~a-Svv~~~WhpkLNQi~~gsgdG~~~vyY 485 (641)
T KOG0772|consen 421 DKLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDISTA-SVVRCLWHPKLNQIFAGSGDGTAHVYY 485 (641)
T ss_pred ceEEEecccccCCCCCceEEEEeccceeeEEEecCCCc-eEEEEeecchhhheeeecCCCceEEEE
Confidence 6777775 3478999998 7777777776666 699999999999999999999999864
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.89 E-value=2.3e-22 Score=206.51 Aligned_cols=278 Identities=19% Similarity=0.264 Sum_probs=218.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|..||-.++|| |- ...|-+|.+++ |+.=.+-+-++|.-+.+|.+|++ .|++.... .+. ...|++
T Consensus 13 htrpvvdl~~s--~i-tp~g~flisa~kd~~pmlr~g~tgdwigtfeghkg-avw~~~l~-------~na----~~aasa 77 (334)
T KOG0278|consen 13 HTRPVVDLAFS--PI-TPDGYFLISASKDGKPMLRNGDTGDWIGTFEGHKG-AVWSATLN-------KNA----TRAASA 77 (334)
T ss_pred CCcceeEEecc--CC-CCCceEEEEeccCCCchhccCCCCCcEEeeeccCc-ceeeeecC-------chh----hhhhhh
Confidence 89999999999 52 11266777777 77777778889999999999998 69998887 443 333333
Q ss_pred -cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE-EEE
Q 000602 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILE 172 (1398)
Q Consensus 95 -gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~-~~~ 172 (1398)
.|-+.+|||.-++ ..++.+ .|..-|.+++|+. |..+|+||+.+..+||||++..+. ...
T Consensus 78 aadftakvw~a~tg---------------delhsf-~hkhivk~~af~~---ds~~lltgg~ekllrvfdln~p~App~E 138 (334)
T KOG0278|consen 78 AADFTAKVWDAVTG---------------DELHSF-EHKHIVKAVAFSQ---DSNYLLTGGQEKLLRVFDLNRPKAPPKE 138 (334)
T ss_pred cccchhhhhhhhhh---------------hhhhhh-hhhheeeeEEecc---cchhhhccchHHHhhhhhccCCCCCchh
Confidence 3899999998763 344555 4888999999999 999999999999999999986543 455
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+.++.+. +..+.|. .....|++.+.|++|++||.+ ++..++++
T Consensus 139 ~~ghtg~-Ir~v~wc---~eD~~iLSSadd~tVRLWD~r---------------------------------Tgt~v~sL 181 (334)
T KOG0278|consen 139 ISGHTGG-IRTVLWC---HEDKCILSSADDKTVRLWDHR---------------------------------TGTEVQSL 181 (334)
T ss_pred hcCCCCc-ceeEEEe---ccCceEEeeccCCceEEEEec---------------------------------cCcEEEEE
Confidence 5555544 3333332 245678888999999999999 66677776
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTC 330 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i 330 (1398)
. -..+|+++.+++||++|.++ ..+.|.+||..+-.. + .-+.-...|.+...+| ..+++|++|..+
T Consensus 182 ~-~~s~VtSlEvs~dG~ilTia-~gssV~Fwdaksf~~-----l------Ks~k~P~nV~SASL~P~k~~fVaGged~~~ 248 (334)
T KOG0278|consen 182 E-FNSPVTSLEVSQDGRILTIA-YGSSVKFWDAKSFGL-----L------KSYKMPCNVESASLHPKKEFFVAGGEDFKV 248 (334)
T ss_pred e-cCCCCcceeeccCCCEEEEe-cCceeEEeccccccc-----e------eeccCccccccccccCCCceEEecCcceEE
Confidence 5 56789999999999977665 556899999988544 2 2223345567777774 689999999999
Q ss_pred EEEcC-CCceEEEE-ecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 331 RVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 331 ~vWd~-~g~~l~~l-~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.||+ +|..+..+ ++|.+ +|.|+.|+|+|...++|+.||+||||...
T Consensus 249 ~kfDy~TgeEi~~~nkgh~g-pVhcVrFSPdGE~yAsGSEDGTirlWQt~ 297 (334)
T KOG0278|consen 249 YKFDYNTGEEIGSYNKGHFG-PVHCVRFSPDGELYASGSEDGTIRLWQTT 297 (334)
T ss_pred EEEeccCCceeeecccCCCC-ceEEEEECCCCceeeccCCCceEEEEEec
Confidence 99999 88888886 89999 79999999999999999999999999984
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.5e-21 Score=205.99 Aligned_cols=295 Identities=14% Similarity=0.254 Sum_probs=228.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|...|.-++.. .. ..++.+++ |.+-+||.+++|+++.++.+|.+ .|.+|+|+ +.+ ..++..+
T Consensus 147 HkDGiW~Vaa~--~t----qpi~gtASADhTA~iWs~Esg~CL~~Y~GH~G-SVNsikfh-------~s~---~L~lTaS 209 (481)
T KOG0300|consen 147 HKDGIWHVAAD--ST----QPICGTASADHTARIWSLESGACLATYTGHTG-SVNSIKFH-------NSG---LLLLTAS 209 (481)
T ss_pred cccceeeehhh--cC----CcceeecccccceeEEeeccccceeeeccccc-ceeeEEec-------ccc---ceEEEcc
Confidence 66667777765 43 56777777 89999999999999999999988 79999999 766 2445556
Q ss_pred cCCeEEEEEec----CCC--CCCC-----------CCCC--------cccccceeeeecccCCCcEEEEEEEeecCCCcE
Q 000602 95 GEKRVKLFELN----FEL--SPNS-----------QYQP--------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS 149 (1398)
Q Consensus 95 gd~~V~vwdl~----~~~--~~~~-----------~~~~--------~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~ 149 (1398)
||++..||... .+. .+.. +-.+ |+...-.++..+.+|...|.+..|.. .|+.
T Consensus 210 GD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dWL~---gg~Q 286 (481)
T KOG0300|consen 210 GDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDWLA---GGQQ 286 (481)
T ss_pred CCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhhhc---Ccce
Confidence 79999999732 111 0000 0001 11112235677899999999999999 9999
Q ss_pred EEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000602 150 LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1398)
Q Consensus 150 Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1398)
+++++.|.+..+||+++++.+..+.+|...+..+. ..|...++++.+.|.+.++||.+
T Consensus 287 ~vTaSWDRTAnlwDVEtge~v~~LtGHd~ELtHcs----tHptQrLVvTsSrDtTFRLWDFR------------------ 344 (481)
T KOG0300|consen 287 MVTASWDRTANLWDVETGEVVNILTGHDSELTHCS----THPTQRLVVTSSRDTTFRLWDFR------------------ 344 (481)
T ss_pred eeeeeccccceeeeeccCceeccccCcchhccccc----cCCcceEEEEeccCceeEeccch------------------
Confidence 99999999999999999999999988776544332 25778899999999999999998
Q ss_pred CCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCc
Q 000602 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309 (1398)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~ 309 (1398)
..-..+..|.||...|+++.|..+. .++|+|+|++|++||+++.+.+ +. + ..-..
T Consensus 345 --------------eaI~sV~VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRsp----lA-----T-IRtdS 399 (481)
T KOG0300|consen 345 --------------EAIQSVAVFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRSP----LA-----T-IRTDS 399 (481)
T ss_pred --------------hhcceeeeecccccceeEEEEecCC-ceeecCCCceEEEeeeccccCc----ce-----e-eecCC
Confidence 1345678899999999999998764 5899999999999999987652 22 2 22345
Q ss_pred cEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEe-----cccCccEEEEEEcCCC--CEEEEEEcCCcEEEEEcC
Q 000602 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIK-----EHIGRGIWRCLYDSLS--SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 310 ~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~-----~h~~~~V~sl~~spdg--~~latgg~Dg~I~iwdl~ 378 (1398)
++..++.+ ...|+.--.+..||+||++|..+..+. +|.. -|.|++|..+. .-|+++|.|..+.-|.++
T Consensus 400 ~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrR-MV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 400 PANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRR-MVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred ccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccce-eeeeeeccccCcccccccccccceeeeeEec
Confidence 67777777 457888888899999999988776654 6766 69999997654 368899999999999984
|
|
| >KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1e-20 Score=196.75 Aligned_cols=300 Identities=13% Similarity=0.188 Sum_probs=227.4
Q ss_pred EEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEE
Q 000602 60 FQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1398)
Q Consensus 60 ~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 139 (1398)
+++|++ ++..|.++ -+| +.++.++.|.+..||--.+ ++.+.++.||++.|||++
T Consensus 6 l~GHER-plTqiKyN-------~eG---DLlFscaKD~~~~vw~s~n---------------GerlGty~GHtGavW~~D 59 (327)
T KOG0643|consen 6 LQGHER-PLTQIKYN-------REG---DLLFSCAKDSTPTVWYSLN---------------GERLGTYDGHTGAVWCCD 59 (327)
T ss_pred cccCcc-ccceEEec-------CCC---cEEEEecCCCCceEEEecC---------------CceeeeecCCCceEEEEE
Confidence 567887 89999999 777 4566666699999998754 667889999999999999
Q ss_pred EEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC-----CCeEEEEEcccCC
Q 000602 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVWKVDWEH 214 (1398)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~-----dg~I~vWd~~~~~ 214 (1398)
..- +.++|+||+.|.++++||+++|+++.+++.+. .+..+.| +.++.+++..+. .+.|.++|++...
T Consensus 60 id~---~s~~liTGSAD~t~kLWDv~tGk~la~~k~~~--~Vk~~~F---~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~ 131 (327)
T KOG0643|consen 60 IDW---DSKHLITGSADQTAKLWDVETGKQLATWKTNS--PVKRVDF---SFGGNLILASTDKQMGYTCFVSVFDIRDDS 131 (327)
T ss_pred ecC---CcceeeeccccceeEEEEcCCCcEEEEeecCC--eeEEEee---ccCCcEEEEEehhhcCcceEEEEEEccCCh
Confidence 988 88999999999999999999999999887654 4555655 777888777653 4678999987211
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCC
Q 000602 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1398)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~ 294 (1398)
- ......++..+..++..++.+-|.|-+++|++|..||.|.+||++++...
T Consensus 132 ~--------------------------~~~s~ep~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~~--- 182 (327)
T KOG0643|consen 132 S--------------------------DIDSEEPYLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKEL--- 182 (327)
T ss_pred h--------------------------hhcccCceEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCcee---
Confidence 0 00134567788889999999999999999999999999999999997551
Q ss_pred CceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCc
Q 000602 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 295 ~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~ 371 (1398)
+ .....|...|.+++++ ..+++|++.|.+.++||. +-..++++.... ||.+.+++|....++.||.-..
T Consensus 183 -v-----~s~~~h~~~Ind~q~s~d~T~FiT~s~Dttakl~D~~tl~v~Kty~te~--PvN~aaisP~~d~VilgGGqeA 254 (327)
T KOG0643|consen 183 -V-----DSDEEHSSKINDLQFSRDRTYFITGSKDTTAKLVDVRTLEVLKTYTTER--PVNTAAISPLLDHVILGGGQEA 254 (327)
T ss_pred -e-----echhhhccccccccccCCcceEEecccCccceeeeccceeeEEEeeecc--cccceecccccceEEecCCcee
Confidence 1 1456788899999998 489999999999999999 778888876543 7999999998887777765332
Q ss_pred EEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEE-cCCcEEEE
Q 000602 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHT 445 (1398)
Q Consensus 372 I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t-~~g~i~~~ 445 (1398)
.-+=-...+ .-.|+. ..+.+ -.++.++...+|-++|++++|+|+|+.++++ .+|++...
T Consensus 255 ~dVTTT~~r-~GKFEA-----------rFyh~---i~eEEigrvkGHFGPINsvAfhPdGksYsSGGEDG~VR~h 314 (327)
T KOG0643|consen 255 MDVTTTSTR-AGKFEA-----------RFYHL---IFEEEIGRVKGHFGPINSVAFHPDGKSYSSGGEDGYVRLH 314 (327)
T ss_pred eeeeeeccc-ccchhh-----------hHHHH---HHHHHhccccccccCcceeEECCCCcccccCCCCceEEEE
Confidence 222111100 000100 00000 0124566777899999999999999988876 46666543
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.3e-21 Score=224.53 Aligned_cols=264 Identities=14% Similarity=0.214 Sum_probs=218.2
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCCC
Q 000602 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 35 g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~~ 113 (1398)
...||.|.+..|++|+..+++.......+ .+.|.++.|+ ++| ..||++ .+|.|.|||...
T Consensus 188 ~n~laValg~~vylW~~~s~~v~~l~~~~-~~~vtSv~ws-------~~G----~~LavG~~~g~v~iwD~~~------- 248 (484)
T KOG0305|consen 188 ANVLAVALGQSVYLWSASSGSVTELCSFG-EELVTSVKWS-------PDG----SHLAVGTSDGTVQIWDVKE------- 248 (484)
T ss_pred CCeEEEEecceEEEEecCCCceEEeEecC-CCceEEEEEC-------CCC----CEEEEeecCCeEEEEehhh-------
Confidence 47999999999999999999865555543 4579999999 998 566665 599999999985
Q ss_pred CCCcccccceeeeeccc-CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC
Q 000602 114 YQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d 192 (1398)
.+.+..+.+ |...|-+++|.. ..+.+|+.|+.|..+|++..+.......++...+..+.+ ++|
T Consensus 249 --------~k~~~~~~~~h~~rvg~laW~~-----~~lssGsr~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkw---s~d 312 (484)
T KOG0305|consen 249 --------QKKTRTLRGSHASRVGSLAWNS-----SVLSSGSRDGKILNHDVRISQHVVSTLQGHRQEVCGLKW---SPD 312 (484)
T ss_pred --------ccccccccCCcCceeEEEeccC-----ceEEEecCCCcEEEEEEecchhhhhhhhcccceeeeeEE---CCC
Confidence 455667777 999999999965 789999999999999998876655422333444556666 889
Q ss_pred CcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC-CCCEE
Q 000602 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKL 271 (1398)
Q Consensus 193 ~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~L 271 (1398)
+.++|+|+.|+.+.|||.. ...+...+..|.+.|.+++|+| ....|
T Consensus 313 ~~~lASGgnDN~~~Iwd~~---------------------------------~~~p~~~~~~H~aAVKA~awcP~q~~lL 359 (484)
T KOG0305|consen 313 GNQLASGGNDNVVFIWDGL---------------------------------SPEPKFTFTEHTAAVKALAWCPWQSGLL 359 (484)
T ss_pred CCeeccCCCccceEeccCC---------------------------------CccccEEEeccceeeeEeeeCCCccCce
Confidence 9999999999999999986 5567788999999999999999 66788
Q ss_pred EEEE--CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCC--EEEEE--eCCCcEEEEcC-CCceEEEEe
Q 000602 272 VSVS--DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS--FIITA--GEDCTCRVWGS-DGKQLKMIK 344 (1398)
Q Consensus 272 aS~s--~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~--~l~sg--s~Dg~i~vWd~-~g~~l~~l~ 344 (1398)
|+|+ .|+.|++||..++.. + ....-...|.++.|++. -|+++ -.+..|.||++ +-+.+..+.
T Consensus 360 AsGGGs~D~~i~fwn~~~g~~-----i------~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~~~~l~ 428 (484)
T KOG0305|consen 360 ATGGGSADRCIKFWNTNTGAR-----I------DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKLVAELL 428 (484)
T ss_pred EEcCCCcccEEEEEEcCCCcE-----e------cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccceeeeec
Confidence 9854 699999999998876 2 22334578999999953 35554 35578999999 888899999
Q ss_pred cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 345 ~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+|..+ |..++++|||..+++|+.|.++++|++-
T Consensus 429 gH~~R-Vl~la~SPdg~~i~t~a~DETlrfw~~f 461 (484)
T KOG0305|consen 429 GHTSR-VLYLALSPDGETIVTGAADETLRFWNLF 461 (484)
T ss_pred CCcce-eEEEEECCCCCEEEEecccCcEEecccc
Confidence 99995 9999999999999999999999999993
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=2.9e-22 Score=211.62 Aligned_cols=283 Identities=18% Similarity=0.245 Sum_probs=221.2
Q ss_pred cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC-------cceEEEEEeecCCCCCcEEEEEECC
Q 000602 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-------RCLLYSMKLWGDNLEALRIASGTIY 202 (1398)
Q Consensus 130 ~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~-------~~~~~s~~~~~~s~d~~~lasgs~d 202 (1398)
+....+.|..|+| ||++|++|+.||-|.+||..+|+....++... ...+.++.| +.|...+|+|+.|
T Consensus 211 g~KSh~EcA~FSP---DgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~F---SRDsEMlAsGsqD 284 (508)
T KOG0275|consen 211 GQKSHVECARFSP---DGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISF---SRDSEMLASGSQD 284 (508)
T ss_pred ccccchhheeeCC---CCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEee---cccHHHhhccCcC
Confidence 3456788999999 99999999999999999999998765554211 223555655 7888999999999
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe-CccCCEEEEEEcCCCCEEEEEECCCeEE
Q 000602 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1398)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~-gH~~~I~~vafspdg~~LaS~s~Dg~V~ 281 (1398)
|.|++|.+. ++.+++++. .|+..|+++.|+.|+..++|++.|.++|
T Consensus 285 GkIKvWri~---------------------------------tG~ClRrFdrAHtkGvt~l~FSrD~SqiLS~sfD~tvR 331 (508)
T KOG0275|consen 285 GKIKVWRIE---------------------------------TGQCLRRFDRAHTKGVTCLSFSRDNSQILSASFDQTVR 331 (508)
T ss_pred CcEEEEEEe---------------------------------cchHHHHhhhhhccCeeEEEEccCcchhhcccccceEE
Confidence 999999999 777888876 8999999999999999999999999999
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEeccc-CccEEEEEEc
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI-GRGIWRCLYD 357 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~-~~~V~sl~~s 357 (1398)
+.-+..+++ ++ .+.||...|..+.|. |..+++++.||+++||+. +++++.+|+... .-+|.++..-
T Consensus 332 iHGlKSGK~-----LK-----EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC~~Tfk~~~~d~~vnsv~~~ 401 (508)
T KOG0275|consen 332 IHGLKSGKC-----LK-----EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTECLSTFKPLGTDYPVNSVILL 401 (508)
T ss_pred Eeccccchh-----HH-----HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhhhhhccCCCCcccceeEEEc
Confidence 999999987 44 888999999999998 789999999999999999 889999887543 2268888877
Q ss_pred CCC-CEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeE-EE
Q 000602 358 SLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTL-YI 435 (1398)
Q Consensus 358 pdg-~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~l-lv 435 (1398)
|.. ..++.+...+++.|.++.|+.++++..... ..+..-+.+.+|.|.+ ++
T Consensus 402 PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkR---------------------------EgGdFi~~~lSpkGewiYc 454 (508)
T KOG0275|consen 402 PKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKR---------------------------EGGDFINAILSPKGEWIYC 454 (508)
T ss_pred CCCCceEEEEcCCCeEEEEeccceEEeeeccCCc---------------------------cCCceEEEEecCCCcEEEE
Confidence 754 478889999999999999887766543221 1123445567888865 45
Q ss_pred EEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEE
Q 000602 436 ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVR 500 (1398)
Q Consensus 436 ~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd 500 (1398)
.+.++.+|.+.+.. +..+..+..++...| .+.- -|..+++|+-++||.+++|.
T Consensus 455 igED~vlYCF~~~s---G~LE~tl~VhEkdvI-Gl~H--------HPHqNllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 455 IGEDGVLYCFSVLS---GKLERTLPVHEKDVI-GLTH--------HPHQNLLASYSEDGLLKLWK 507 (508)
T ss_pred EccCcEEEEEEeec---Cceeeeeeccccccc-cccc--------CcccchhhhhcccchhhhcC
Confidence 56777777554433 333344445543332 2211 36788999999999999995
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.4e-20 Score=197.15 Aligned_cols=278 Identities=14% Similarity=0.194 Sum_probs=219.0
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
..+.|+++.|+ ++ |.+|++++ |.+|+|||..+++.+.++..++ ..|..++|. ...+ ..+.++
T Consensus 13 ~~~~i~sl~fs--~~----G~~litss~dDsl~LYd~~~g~~~~ti~skk-yG~~~~~Ft-------h~~~---~~i~sS 75 (311)
T KOG1446|consen 13 TNGKINSLDFS--DD----GLLLITSSEDDSLRLYDSLSGKQVKTINSKK-YGVDLACFT-------HHSN---TVIHSS 75 (311)
T ss_pred CCCceeEEEec--CC----CCEEEEecCCCeEEEEEcCCCceeeEeeccc-ccccEEEEe-------cCCc---eEEEcc
Confidence 45789999999 88 88888876 6899999999999999998654 368888887 3321 455554
Q ss_pred c--CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 95 g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
. |.+||..++.+ -+.++.+.||...|++++.+| -++.+++++.|++|++||++..++...
T Consensus 76 tk~d~tIryLsl~d---------------NkylRYF~GH~~~V~sL~~sP---~~d~FlS~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHD---------------NKYLRYFPGHKKRVNSLSVSP---KDDTFLSSSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred CCCCCceEEEEeec---------------CceEEEcCCCCceEEEEEecC---CCCeEEecccCCeEEeeEecCCCCceE
Confidence 4 88999999986 568899999999999999999 779999999999999999997777666
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+....+.+ .++ +|+|.++|++...+.|+++|++.-. ..+..++
T Consensus 138 l~~~~~pi---~Af---Dp~GLifA~~~~~~~IkLyD~Rs~d-------------------------------kgPF~tf 180 (311)
T KOG1446|consen 138 LNLSGRPI---AAF---DPEGLIFALANGSELIKLYDLRSFD-------------------------------KGPFTTF 180 (311)
T ss_pred EecCCCcc---eeE---CCCCcEEEEecCCCeEEEEEecccC-------------------------------CCCceeE
Confidence 55444332 223 7999999999988899999998211 1122222
Q ss_pred e---CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc---EEEEEEc--CCEEEEE
Q 000602 253 V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR---VWDCCLT--DSFIITA 324 (1398)
Q Consensus 253 ~---gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~---V~~l~~s--~~~l~sg 324 (1398)
. +-....+.|.|||||++++.+...+.+++.|.-++.. .. .+.++... -.++.|. ++++++|
T Consensus 181 ~i~~~~~~ew~~l~FS~dGK~iLlsT~~s~~~~lDAf~G~~-----~~-----tfs~~~~~~~~~~~a~ftPds~Fvl~g 250 (311)
T KOG1446|consen 181 SITDNDEAEWTDLEFSPDGKSILLSTNASFIYLLDAFDGTV-----KS-----TFSGYPNAGNLPLSATFTPDSKFVLSG 250 (311)
T ss_pred ccCCCCccceeeeEEcCCCCEEEEEeCCCcEEEEEccCCcE-----ee-----eEeeccCCCCcceeEEECCCCcEEEEe
Confidence 2 4467789999999999999999999999999998875 22 34433322 2566776 5899999
Q ss_pred eCCCcEEEEcC-CCceEEEEecc-cCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 325 GEDCTCRVWGS-DGKQLKMIKEH-IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 325 s~Dg~i~vWd~-~g~~l~~l~~h-~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.||+|.+|++ +|..+..+++. .+ ++.++.|+|.-..++++ +..+.+|-..
T Consensus 251 s~dg~i~vw~~~tg~~v~~~~~~~~~-~~~~~~fnP~~~mf~sa--~s~l~fw~p~ 303 (311)
T KOG1446|consen 251 SDDGTIHVWNLETGKKVAVLRGPNGG-PVSCVRFNPRYAMFVSA--SSNLVFWLPD 303 (311)
T ss_pred cCCCcEEEEEcCCCcEeeEecCCCCC-CccccccCCceeeeeec--CceEEEEecc
Confidence 99999999999 99999999984 55 79999999987666654 5578888763
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.88 E-value=5.6e-21 Score=210.44 Aligned_cols=279 Identities=16% Similarity=0.268 Sum_probs=230.2
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcC
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd 96 (1398)
-.++++... |. ...+++|+ |.++.++|..+++.+..|++|.. .|..+.|+ |+. +..+..+.|
T Consensus 220 pgi~ald~~--~s----~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~k-ki~~v~~~-------~~~---~~v~~aSad 282 (506)
T KOG0289|consen 220 PGITALDII--PS----SSKILTGGEDKTAVLFDKPSNQILATLKGHTK-KITSVKFH-------KDL---DTVITASAD 282 (506)
T ss_pred CCeeEEeec--CC----CCcceecCCCCceEEEecchhhhhhhccCcce-EEEEEEec-------cch---hheeecCCc
Confidence 357888888 64 46888888 78999999999999999999876 79999999 775 244444559
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccC
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~ 176 (1398)
..|+||...... .......|..+|+.+..+| .|.||++++.|++..+.|++++..+......
T Consensus 283 ~~i~vws~~~~s---------------~~~~~~~h~~~V~~ls~h~---tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~ 344 (506)
T KOG0289|consen 283 EIIRVWSVPLSS---------------EPTSSRPHEEPVTGLSLHP---TGEYLLSASNDGTWAFSDISSGSQLTVVSDE 344 (506)
T ss_pred ceEEeecccccc---------------Cccccccccccceeeeecc---CCcEEEEecCCceEEEEEccCCcEEEEEeec
Confidence 999999987532 2335568999999999999 9999999999999999999999988776653
Q ss_pred -CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 177 -ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 177 -~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
....+.+..| .|||.++.+|+.|+.|++||+. +...+..|.+|
T Consensus 345 ~s~v~~ts~~f---HpDgLifgtgt~d~~vkiwdlk---------------------------------s~~~~a~Fpgh 388 (506)
T KOG0289|consen 345 TSDVEYTSAAF---HPDGLIFGTGTPDGVVKIWDLK---------------------------------SQTNVAKFPGH 388 (506)
T ss_pred cccceeEEeeE---cCCceEEeccCCCceEEEEEcC---------------------------------CccccccCCCC
Confidence 3445667777 6889999999999999999998 45567889999
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEE
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vW 333 (1398)
+++|..|+|+.+|-+|+++++|+.|++||++..+. .+. ........+.++.|. +.+|+.++.|=.|.++
T Consensus 389 t~~vk~i~FsENGY~Lat~add~~V~lwDLRKl~n-----~kt----~~l~~~~~v~s~~fD~SGt~L~~~g~~l~Vy~~ 459 (506)
T KOG0289|consen 389 TGPVKAISFSENGYWLATAADDGSVKLWDLRKLKN-----FKT----IQLDEKKEVNSLSFDQSGTYLGIAGSDLQVYIC 459 (506)
T ss_pred CCceeEEEeccCceEEEEEecCCeEEEEEehhhcc-----cce----eeccccccceeEEEcCCCCeEEeecceeEEEEE
Confidence 99999999999999999999999999999998654 331 222233468888887 7899999888777777
Q ss_pred cC---CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 334 GS---DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 334 d~---~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
+- +-.++..+..|.+ ..+.+.|.....+++++|.|..++++.+
T Consensus 460 ~k~~k~W~~~~~~~~~sg-~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 460 KKKTKSWTEIKELADHSG-LSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred ecccccceeeehhhhccc-ccceeeecccceEEeeccchhheEEeec
Confidence 74 3456777888887 5899999999999999999999998764
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=4.9e-21 Score=222.02 Aligned_cols=283 Identities=20% Similarity=0.337 Sum_probs=224.8
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE--EEEccCCcceEEEEEeecCCCCCcEEEEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~--~~l~~~~~~~~~s~~~~~~s~d~~~lasg 199 (1398)
.++.+.+.+|...|..+++.+ +..+++++.|+++++|+-..++.+ ..+..|.+.+.+++++.. .++..+++|
T Consensus 4 Y~ls~~l~gH~~DVr~v~~~~----~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e--~~~~~l~~g 77 (745)
T KOG0301|consen 4 YKLSHELEGHKSDVRAVAVTD----GVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAE--SDKGRLVVG 77 (745)
T ss_pred ceeEEEeccCccchheeEecC----CeEEeecCCCCceeeeeccCcccccceecccCcceeeccceecc--ccCcceEee
Confidence 567788999999999999874 457899999999999998766554 345677777777777643 456679999
Q ss_pred ECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCe
Q 000602 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1398)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~ 279 (1398)
+.|.+|.+|... ...++..+.||+..|.+++...++. ++|||.|.+
T Consensus 78 ~~D~~i~v~~~~---------------------------------~~~P~~~LkgH~snVC~ls~~~~~~-~iSgSWD~T 123 (745)
T KOG0301|consen 78 GMDTTIIVFKLS---------------------------------QAEPLYTLKGHKSNVCSLSIGEDGT-LISGSWDST 123 (745)
T ss_pred cccceEEEEecC---------------------------------CCCchhhhhccccceeeeecCCcCc-eEecccccc
Confidence 999999999998 6788999999999999999888887 999999999
Q ss_pred EEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcC
Q 000602 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358 (1398)
Q Consensus 280 V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~sp 358 (1398)
+++|....-.. .+.+|+..||+++.- .+.++||+.|.+|++|.- ++.+++|.+|.. -|+++++-+
T Consensus 124 akvW~~~~l~~------------~l~gH~asVWAv~~l~e~~~vTgsaDKtIklWk~-~~~l~tf~gHtD-~VRgL~vl~ 189 (745)
T KOG0301|consen 124 AKVWRIGELVY------------SLQGHTASVWAVASLPENTYVTGSADKTIKLWKG-GTLLKTFSGHTD-CVRGLAVLD 189 (745)
T ss_pred eEEecchhhhc------------ccCCcchheeeeeecCCCcEEeccCcceeeeccC-Cchhhhhccchh-heeeeEEec
Confidence 99999876443 789999999999887 479999999999999996 888999999998 699999998
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EE
Q 000602 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1398)
Q Consensus 359 dg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t 437 (1398)
++. +++++.||.|++|++.+.++....+ |+..|.++....++.+++ ++
T Consensus 190 ~~~-flScsNDg~Ir~w~~~ge~l~~~~g------------------------------htn~vYsis~~~~~~~Ivs~g 238 (745)
T KOG0301|consen 190 DSH-FLSCSNDGSIRLWDLDGEVLLEMHG------------------------------HTNFVYSISMALSDGLIVSTG 238 (745)
T ss_pred CCC-eEeecCCceEEEEeccCceeeeeec------------------------------cceEEEEEEecCCCCeEEEec
Confidence 754 6799999999999998776655444 445788888555555555 55
Q ss_pred cCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCC
Q 000602 438 NHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1398)
Q Consensus 438 ~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~ 504 (1398)
.++++.. |... .+.+..+.+ ...+++..++.+ .-|++|+.||.|+||.....
T Consensus 239 EDrtlri---W~~~--e~~q~I~lP-ttsiWsa~~L~N---------gDIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 239 EDRTLRI---WKKD--ECVQVITLP-TTSIWSAKVLLN---------GDIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred CCceEEE---eecC--ceEEEEecC-ccceEEEEEeeC---------CCEEEeccCceEEEEEeccc
Confidence 6777764 4443 233444333 346666666533 22889999999999988743
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.7e-20 Score=194.72 Aligned_cols=269 Identities=13% Similarity=0.145 Sum_probs=217.3
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEE--EeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF--QVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~--~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
|.++|.+|+|+ .+ |..|++|+ |+++.||+++.++..... ++|.+ .|-.+++.|.. |+ .+.+
T Consensus 19 ~~~~v~Sv~wn--~~----g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~-svdql~w~~~~----~d-----~~at 82 (313)
T KOG1407|consen 19 HVQKVHSVAWN--CD----GTKLASGSFDKTVSVWNLERDRFRKELVYRGHTD-SVDQLCWDPKH----PD-----LFAT 82 (313)
T ss_pred hhhcceEEEEc--cc----CceeeecccCCceEEEEecchhhhhhhcccCCCc-chhhheeCCCC----Cc-----ceEE
Confidence 78899999999 88 99999999 899999999887655443 34554 68889998432 43 6777
Q ss_pred EEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 93 LFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 93 ~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
+++|++|++||+.. .++.+......+. .-+.|+| +|.+++.++.|..|.+.|.++.+....
T Consensus 83 as~dk~ir~wd~r~---------------~k~~~~i~~~~en-i~i~wsp---~g~~~~~~~kdD~it~id~r~~~~~~~ 143 (313)
T KOG1407|consen 83 ASGDKTIRIWDIRS---------------GKCTARIETKGEN-INITWSP---DGEYIAVGNKDDRITFIDARTYKIVNE 143 (313)
T ss_pred ecCCceEEEEEecc---------------CcEEEEeeccCcc-eEEEEcC---CCCEEEEecCcccEEEEEecccceeeh
Confidence 88899999999985 5566665544344 4578999 999999999999999999988777654
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
.+.. +.+..+.++ .++.+++..+-.|.|.|.... ..+++..+
T Consensus 144 ~~~~--~e~ne~~w~---~~nd~Fflt~GlG~v~ILsyp---------------------------------sLkpv~si 185 (313)
T KOG1407|consen 144 EQFK--FEVNEISWN---NSNDLFFLTNGLGCVEILSYP---------------------------------SLKPVQSI 185 (313)
T ss_pred hccc--ceeeeeeec---CCCCEEEEecCCceEEEEecc---------------------------------cccccccc
Confidence 4322 223334442 345566666667899998887 67889999
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i 330 (1398)
+.|.....+|.|+|+|++||+|+.|-.+.+||+...-+ . +.+..+.-+|..+.|+ +++|++|++|..|
T Consensus 186 ~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC-----~-----R~isRldwpVRTlSFS~dg~~lASaSEDh~I 255 (313)
T KOG1407|consen 186 KAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELIC-----E-----RCISRLDWPVRTLSFSHDGRMLASASEDHFI 255 (313)
T ss_pred ccCCcceEEEEECCCCceEeeccccceeeccChhHhhh-----h-----eeeccccCceEEEEeccCcceeeccCccceE
Confidence 99999999999999999999999999999999988665 3 3777889999999998 8999999999999
Q ss_pred EEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 331 RVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 331 ~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
-|=++ +|..+..++.. + +-..++|+|...+||-++.|
T Consensus 256 DIA~vetGd~~~eI~~~-~-~t~tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 256 DIAEVETGDRVWEIPCE-G-PTFTVAWHPKRPLLAYACDD 293 (313)
T ss_pred EeEecccCCeEEEeecc-C-CceeEEecCCCceeeEEecC
Confidence 99999 89998888644 4 57899999999999888765
|
|
| >KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.88 E-value=7.4e-22 Score=202.83 Aligned_cols=285 Identities=14% Similarity=0.217 Sum_probs=228.3
Q ss_pred EEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEE
Q 000602 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 137 (1398)
+..+|.+ +|..++|||.. |+| .+|++.. |+.=.+-+-++ +..+.++.||.+.||+
T Consensus 9 ~c~ghtr-pvvdl~~s~it----p~g----~flisa~kd~~pmlr~g~t---------------gdwigtfeghkgavw~ 64 (334)
T KOG0278|consen 9 TCHGHTR-PVVDLAFSPIT----PDG----YFLISASKDGKPMLRNGDT---------------GDWIGTFEGHKGAVWS 64 (334)
T ss_pred EEcCCCc-ceeEEeccCCC----CCc----eEEEEeccCCCchhccCCC---------------CCcEEeeeccCcceee
Confidence 4556666 89999999664 888 6666655 66555444443 5578899999999999
Q ss_pred EEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccc
Q 000602 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~ 217 (1398)
..... +..+-|+++.|-+.+|||.-+|..+..+.. +.++.+++| +.|..+|++|+.+..++|+|++.
T Consensus 65 ~~l~~---na~~aasaaadftakvw~a~tgdelhsf~h--khivk~~af---~~ds~~lltgg~ekllrvfdln~----- 131 (334)
T KOG0278|consen 65 ATLNK---NATRAASAAADFTAKVWDAVTGDELHSFEH--KHIVKAVAF---SQDSNYLLTGGQEKLLRVFDLNR----- 131 (334)
T ss_pred eecCc---hhhhhhhhcccchhhhhhhhhhhhhhhhhh--hheeeeEEe---cccchhhhccchHHHhhhhhccC-----
Confidence 99988 888889999999999999999998887754 336677776 78899999999999999999982
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCce
Q 000602 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
...+...+.+|.+.|..+-|....+.++|.++|++||+||.+++.. ++
T Consensus 132 ---------------------------p~App~E~~ghtg~Ir~v~wc~eD~~iLSSadd~tVRLWD~rTgt~-----v~ 179 (334)
T KOG0278|consen 132 ---------------------------PKAPPKEISGHTGGIRTVLWCHEDKCILSSADDKTVRLWDHRTGTE-----VQ 179 (334)
T ss_pred ---------------------------CCCCchhhcCCCCcceeEEEeccCceEEeeccCCceEEEEeccCcE-----EE
Confidence 3345567889999999999999889999999999999999999876 33
Q ss_pred EeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEE
Q 000602 298 EVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVH 375 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iw 375 (1398)
...-...|.++.++ +..++|....+.|.+||. +-..++.++.... |.+..++|+...+++|+.|..++.|
T Consensus 180 ------sL~~~s~VtSlEvs~dG~ilTia~gssV~Fwdaksf~~lKs~k~P~n--V~SASL~P~k~~fVaGged~~~~kf 251 (334)
T KOG0278|consen 180 ------SLEFNSPVTSLEVSQDGRILTIAYGSSVKFWDAKSFGLLKSYKMPCN--VESASLHPKKEFFVAGGEDFKVYKF 251 (334)
T ss_pred ------EEecCCCCcceeeccCCCEEEEecCceeEEeccccccceeeccCccc--cccccccCCCceEEecCcceEEEEE
Confidence 22234678888887 567778888899999999 7778888777664 9999999999999999999999999
Q ss_pred EcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEE-cCCcEEEEEeec
Q 000602 376 QFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLCD 449 (1398)
Q Consensus 376 dl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t-~~g~i~~~~l~~ 449 (1398)
|... ..+.. ...+|.++|.|+.|+|+|.+++++ .+|.|.+|....
T Consensus 252 Dy~TgeEi~~-----------------------------~nkgh~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~ 298 (334)
T KOG0278|consen 252 DYNTGEEIGS-----------------------------YNKGHFGPVHCVRFSPDGELYASGSEDGTIRLWQTTP 298 (334)
T ss_pred eccCCceeee-----------------------------cccCCCCceEEEEECCCCceeeccCCCceEEEEEecC
Confidence 9942 21111 124677899999999999988876 578887665443
|
|
| >KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.2e-21 Score=220.21 Aligned_cols=280 Identities=15% Similarity=0.302 Sum_probs=224.7
Q ss_pred eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCC
Q 000602 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1398)
Q Consensus 55 ~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~ 133 (1398)
++-+.+.+|.. .|..+++. ++ ..+++.+ |+++++|+-.... ......+.+|.+
T Consensus 5 ~ls~~l~gH~~-DVr~v~~~-------~~-----~~i~s~sRd~t~~vw~~~~~~-------------~l~~~~~~~~~g 58 (745)
T KOG0301|consen 5 KLSHELEGHKS-DVRAVAVT-------DG-----VCIISGSRDGTVKVWAKKGKQ-------------YLETHAFEGPKG 58 (745)
T ss_pred eeEEEeccCcc-chheeEec-------CC-----eEEeecCCCCceeeeeccCcc-------------cccceecccCcc
Confidence 44567777765 57777776 54 3455554 9999999976432 334466778999
Q ss_pred cEEE-EEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEccc
Q 000602 134 WVFD-VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1398)
Q Consensus 134 ~V~~-v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~ 212 (1398)
.|.. +++.+ .++..|++|+.|.+|.+|.+.+..++..+.+|... +.++.. ..++ .+++|+.|.++++|...
T Consensus 59 ~i~~~i~y~e--~~~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~sn-VC~ls~---~~~~-~~iSgSWD~TakvW~~~- 130 (745)
T KOG0301|consen 59 FIANSICYAE--SDKGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSN-VCSLSI---GEDG-TLISGSWDSTAKVWRIG- 130 (745)
T ss_pred eeeccceecc--ccCcceEeecccceEEEEecCCCCchhhhhccccc-eeeeec---CCcC-ceEecccccceEEecch-
Confidence 9988 99886 26667899999999999999999999999988764 445443 2334 49999999999999875
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
+....+.+|...|+++++-|++ .++|||.|++|++|.-.+.
T Consensus 131 ----------------------------------~l~~~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~~~~---- 171 (745)
T KOG0301|consen 131 ----------------------------------ELVYSLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKGGTL---- 171 (745)
T ss_pred ----------------------------------hhhcccCCcchheeeeeecCCC-cEEeccCcceeeeccCCch----
Confidence 3344589999999999999988 8899999999999987442
Q ss_pred CCCceEeeeeEEecCCccEEEEEEcC-CEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCc
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s~-~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~ 371 (1398)
+ .++.||+..|..+++-+ ..|++|+.||.|++|+++|+.+..+.+|.. -|.+++..+++..++++|.|++
T Consensus 172 ---l-----~tf~gHtD~VRgL~vl~~~~flScsNDg~Ir~w~~~ge~l~~~~ghtn-~vYsis~~~~~~~Ivs~gEDrt 242 (745)
T KOG0301|consen 172 ---L-----KTFSGHTDCVRGLAVLDDSHFLSCSNDGSIRLWDLDGEVLLEMHGHTN-FVYSISMALSDGLIVSTGEDRT 242 (745)
T ss_pred ---h-----hhhccchhheeeeEEecCCCeEeecCCceEEEEeccCceeeeeeccce-EEEEEEecCCCCeEEEecCCce
Confidence 2 38899999999999985 599999999999999999999999999999 6999998888889999999999
Q ss_pred EEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEe
Q 000602 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKL 447 (1398)
Q Consensus 372 I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l 447 (1398)
++||+.. .+.+ .+..|. -.|.++.+.++|.+++++++|.++.+..
T Consensus 243 lriW~~~-e~~q------------------~I~lPt------------tsiWsa~~L~NgDIvvg~SDG~VrVfT~ 287 (745)
T KOG0301|consen 243 LRIWKKD-ECVQ------------------VITLPT------------TSIWSAKVLLNGDIVVGGSDGRVRVFTV 287 (745)
T ss_pred EEEeecC-ceEE------------------EEecCc------------cceEEEEEeeCCCEEEeccCceEEEEEe
Confidence 9999984 2222 122222 2478888889999999999999986544
|
|
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2e-20 Score=198.37 Aligned_cols=313 Identities=16% Similarity=0.248 Sum_probs=214.5
Q ss_pred EEEeCCcCe-eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeE--EEEE--EeeeCccEEEEEEecccccc
Q 000602 7 SEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTL--IRPF--QVFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 7 ~iWdl~~~~-h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~--l~~~--~~~~~~~V~~i~fs~~~~~~ 80 (1398)
.-|++...+ |.+.|++++|+ .| |++||+.+ |++|+||++.+-.. .+.+ ++.-+ .-+.++|+
T Consensus 75 Hpl~~~~LKgH~~~vt~~~Fs--Sd----GK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d-hpT~V~Fa------ 141 (420)
T KOG2096|consen 75 HPLNVSVLKGHKKEVTDVAFS--SD----GKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD-HPTRVVFA------ 141 (420)
T ss_pred cchhhhhhhccCCceeeeEEc--CC----CceeEEEeCCceEEEEecchhhhhhhhHhhccccCC-CceEEEEC------
Confidence 345555544 89999999999 88 99999988 79999999986321 1111 11112 45778999
Q ss_pred CCCCccceeEEEEEcCCeEEEEEecCCCC--CCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCe
Q 000602 81 GSVSTRVTFEVALFGEKRVKLFELNFELS--PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS 158 (1398)
Q Consensus 81 ~pdg~~~~~~la~~gd~~V~vwdl~~~~~--~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~ 158 (1398)
||-+ ...+++..+.++++|.+..... ....+.+ .-...-.+.|.-.|.++-... ++.+|++++.|..
T Consensus 142 -pDc~--s~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~-----~D~~~f~~kh~v~~i~iGiA~---~~k~imsas~dt~ 210 (420)
T KOG2096|consen 142 -PDCK--SVVVSVKRGNKLCVYKLVKKTDGSGSHHFVH-----IDNLEFERKHQVDIINIGIAG---NAKYIMSASLDTK 210 (420)
T ss_pred -CCcc--eEEEEEccCCEEEEEEeeecccCCCCccccc-----ccccccchhcccceEEEeecC---CceEEEEecCCCc
Confidence 7763 1233333478999999874321 0011111 111122345677787877776 8899999999999
Q ss_pred EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000602 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1398)
Q Consensus 159 V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1398)
|.+|++. |+.+..+...... .+..++ +|+|.+|++++.--.|++|.+-..+.. ++
T Consensus 211 i~lw~lk-Gq~L~~idtnq~~-n~~aav---SP~GRFia~~gFTpDVkVwE~~f~kdG-------------------~f- 265 (420)
T KOG2096|consen 211 ICLWDLK-GQLLQSIDTNQSS-NYDAAV---SPDGRFIAVSGFTPDVKVWEPIFTKDG-------------------TF- 265 (420)
T ss_pred EEEEecC-Cceeeeecccccc-ccceee---CCCCcEEEEecCCCCceEEEEEeccCc-------------------ch-
Confidence 9999998 8888887654433 233333 899999999999999999997622111 00
Q ss_pred ecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEe--eeeEEecCCccEEEEEE
Q 000602 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV--GSSVLYGHNARVWDCCL 316 (1398)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i--~~~~~~gh~~~V~~l~~ 316 (1398)
.....+..++||...|..++|+++.+.++|+|.||++||||..-.-.. .+....+ ++..+..-.+....+..
T Consensus 266 -----qev~rvf~LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~-~qDpk~Lk~g~~pl~aag~~p~RL~l 339 (420)
T KOG2096|consen 266 -----QEVKRVFSLKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEA-GQDPKILKEGSAPLHAAGSEPVRLEL 339 (420)
T ss_pred -----hhhhhhheeccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEec-CCCchHhhcCCcchhhcCCCceEEEe
Confidence 134456789999999999999999999999999999999998754321 1111111 11122223334446777
Q ss_pred cC-CEEEEEeCCCcEEEEcC-CCceEEEEec-ccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 317 TD-SFIITAGEDCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 317 s~-~~l~sgs~Dg~i~vWd~-~g~~l~~l~~-h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
+| ..++..+...++.++.. +|+....+.. |.+ .|.+++|+++|++++|+| |..++++.
T Consensus 340 sP~g~~lA~s~gs~l~~~~se~g~~~~~~e~~h~~-~Is~is~~~~g~~~atcG-dr~vrv~~ 400 (420)
T KOG2096|consen 340 SPSGDSLAVSFGSDLKVFASEDGKDYPELEDIHST-TISSISYSSDGKYIATCG-DRYVRVIR 400 (420)
T ss_pred CCCCcEEEeecCCceEEEEcccCccchhHHHhhcC-ceeeEEecCCCcEEeeec-ceeeeeec
Confidence 64 34444556678999998 7777766654 555 699999999999999988 67888776
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.9e-20 Score=228.67 Aligned_cols=295 Identities=15% Similarity=0.183 Sum_probs=231.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe---CCcEEEEECCC------------CeEEEEEEeeeCccEEEEEEecccccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEA------------GTLIRPFQVFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~---dg~I~Iwd~~t------------g~~l~~~~~~~~~~V~~i~fs~~~~~~ 80 (1398)
+...|.+++.+ || +..+|+|+ |+.++||+.+. .+.+.+...|.+ .|.|+.|+
T Consensus 12 ~~~~IfSIdv~--pd----g~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~l~k~l~~m~~h~~-sv~CVR~S------ 78 (942)
T KOG0973|consen 12 NEKSIFSIDVH--PD----GVKFATGGQVLDGGIVIWSQDPVLDEKEEKNENLPKHLCTMDDHDG-SVNCVRFS------ 78 (942)
T ss_pred CCeeEEEEEec--CC----ceeEecCCccccccceeeccccccchhhhhhcccchhheeeccccC-ceeEEEEC------
Confidence 34569999999 99 88999977 58888999753 233445555655 79999999
Q ss_pred CCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCC----cccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC
Q 000602 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQP----ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1398)
Q Consensus 81 ~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~----~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~ 155 (1398)
||| .+||+++ |+.|.||+.... .....|.- ...-.++....+.+|...|.+++|+| ++.+||+++.
T Consensus 79 -~dG----~~lAsGSDD~~v~iW~~~~~-~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp---~~~~lvS~s~ 149 (942)
T KOG0973|consen 79 -PDG----SYLASGSDDRLVMIWERAEI-GSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSP---DDSLLVSVSL 149 (942)
T ss_pred -CCC----CeEeeccCcceEEEeeeccc-CCcccccccccccccceeeEEEEEecCCCccceeccCC---CccEEEEecc
Confidence 999 7888888 688999998841 11112211 11225788999999999999999999 9999999999
Q ss_pred CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000602 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1398)
Q Consensus 156 Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1398)
|++|.|||..+.+.+..+.+|.. .+-.+.| +|-|.++|+-+.|++|++|+..
T Consensus 150 DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~---DP~Gky~ASqsdDrtikvwrt~------------------------ 201 (942)
T KOG0973|consen 150 DNSVIIWNAKTFELLKVLRGHQS-LVKGVSW---DPIGKYFASQSDDRTLKVWRTS------------------------ 201 (942)
T ss_pred cceEEEEccccceeeeeeecccc-cccceEE---CCccCeeeeecCCceEEEEEcc------------------------
Confidence 99999999999988888887765 3445555 7899999999999999999976
Q ss_pred eeeecccccceeEEEEEeCc------cCCEEEEEEcCCCCEEEEEEC----CCeEEEEEcCCCcccCCCCceEeeeeEEe
Q 000602 236 CFKLQDQQHTAVNLFRLVGH------EGSIFRIEWSSCGSKLVSVSD----DRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1398)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH------~~~I~~vafspdg~~LaS~s~----Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1398)
.....+.+.++ +..+..+.|||||.+|++.-. --++.|.+-.+.+.. ..+.
T Consensus 202 ---------dw~i~k~It~pf~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~----------~~Lv 262 (942)
T KOG0973|consen 202 ---------DWGIEKSITKPFEESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVD----------KDLV 262 (942)
T ss_pred ---------cceeeEeeccchhhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceee----------eeee
Confidence 23333333333 335788999999999998642 236777776665431 4888
Q ss_pred cCCccEEEEEEcC-------C------------EEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEE
Q 000602 306 GHNARVWDCCLTD-------S------------FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1398)
Q Consensus 306 gh~~~V~~l~~s~-------~------------~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~lat 365 (1398)
||.+++.++.|+| + .+++|+.|++|.||.. ..+++..++.-....|..+.|+|||..|+.
T Consensus 263 GH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG~~Lfa 342 (942)
T KOG0973|consen 263 GHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDGFSLFA 342 (942)
T ss_pred cCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCCCeEEE
Confidence 9999999999982 2 6889999999999998 677777665555558999999999999999
Q ss_pred EEcCCcEEEEEcCC
Q 000602 366 AGFDSAIKVHQFQA 379 (1398)
Q Consensus 366 gg~Dg~I~iwdl~~ 379 (1398)
++.||+|.+..++.
T Consensus 343 cS~DGtV~~i~Fee 356 (942)
T KOG0973|consen 343 CSLDGTVALIHFEE 356 (942)
T ss_pred EecCCeEEEEEcch
Confidence 99999999999953
|
|
| >KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.87 E-value=8.9e-22 Score=208.00 Aligned_cols=255 Identities=12% Similarity=0.197 Sum_probs=209.2
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEee
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKV 143 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~ 143 (1398)
...+.+..|| ||| .+|++++ ||-|.+|+..++..+.+ ++......+.-+.++|.|+.|+.
T Consensus 213 KSh~EcA~FS-------PDg----qyLvsgSvDGFiEVWny~~GKlrKD-------LkYQAqd~fMMmd~aVlci~FSR- 273 (508)
T KOG0275|consen 213 KSHVECARFS-------PDG----QYLVSGSVDGFIEVWNYTTGKLRKD-------LKYQAQDNFMMMDDAVLCISFSR- 273 (508)
T ss_pred ccchhheeeC-------CCC----ceEeeccccceeeeehhccchhhhh-------hhhhhhcceeecccceEEEeecc-
Confidence 3468888999 998 6777776 99999999987542211 01112223456789999999999
Q ss_pred cCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCC
Q 000602 144 CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1398)
Q Consensus 144 ~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1398)
|...||+|+.||.|++|.+.+|.+++.+...+...+.++.| +.|+..+.+++.|.++++.-+.
T Consensus 274 --DsEMlAsGsqDGkIKvWri~tG~ClRrFdrAHtkGvt~l~F---SrD~SqiLS~sfD~tvRiHGlK------------ 336 (508)
T KOG0275|consen 274 --DSEMLASGSQDGKIKVWRIETGQCLRRFDRAHTKGVTCLSF---SRDNSQILSASFDQTVRIHGLK------------ 336 (508)
T ss_pred --cHHHhhccCcCCcEEEEEEecchHHHHhhhhhccCeeEEEE---ccCcchhhcccccceEEEeccc------------
Confidence 99999999999999999999999999998666666788887 7889999999999999999998
Q ss_pred CCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeE
Q 000602 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSV 303 (1398)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~ 303 (1398)
+++.+..++||+..|+...|.+||..++|+|.||+|++|+..+..+ ...+ .
T Consensus 337 ---------------------SGK~LKEfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~KtteC-----~~Tf---k 387 (508)
T KOG0275|consen 337 ---------------------SGKCLKEFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTEC-----LSTF---K 387 (508)
T ss_pred ---------------------cchhHHHhcCccccccceEEcCCCCeEEEecCCccEEEecCcchhh-----hhhc---c
Confidence 7888999999999999999999999999999999999999999877 3322 2
Q ss_pred EecCCccEEEEEEc---CCEEEEEeCCCcEEEEcCCCceEEEEecc---cCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 304 LYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 304 ~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h---~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
..+....|.++... +..++.|....++.|-++.|+.++.|..- .+ ..-++.++|.|.++.+.|.|+.+..+..
T Consensus 388 ~~~~d~~vnsv~~~PKnpeh~iVCNrsntv~imn~qGQvVrsfsSGkREgG-dFi~~~lSpkGewiYcigED~vlYCF~~ 466 (508)
T KOG0275|consen 388 PLGTDYPVNSVILLPKNPEHFIVCNRSNTVYIMNMQGQVVRSFSSGKREGG-DFINAILSPKGEWIYCIGEDGVLYCFSV 466 (508)
T ss_pred CCCCcccceeEEEcCCCCceEEEEcCCCeEEEEeccceEEeeeccCCccCC-ceEEEEecCCCcEEEEEccCcEEEEEEe
Confidence 23456677777765 57899999999999999999999988643 33 3557788999999999999999999998
Q ss_pred -CCCCcccc
Q 000602 378 -QAFLPGSL 385 (1398)
Q Consensus 378 -~~~~l~~l 385 (1398)
.|.+.+++
T Consensus 467 ~sG~LE~tl 475 (508)
T KOG0275|consen 467 LSGKLERTL 475 (508)
T ss_pred ecCceeeee
Confidence 44443333
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.1e-21 Score=201.93 Aligned_cols=286 Identities=13% Similarity=0.242 Sum_probs=215.6
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC------------C------eEEEEEEeeeCccEEEEEEecc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------------G------TLIRPFQVFHGIRLHGISCNFI 76 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t------------g------~~l~~~~~~~~~~V~~i~fs~~ 76 (1398)
|-+++.+.+|+ || |.++|+|+ |..|+|.|++. + -.++++-.|-. .|..+.|+
T Consensus 111 HK~~cR~aafs--~D----G~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~d-evn~l~FH-- 181 (430)
T KOG0640|consen 111 HKSPCRAAAFS--PD----GSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVD-EVNDLDFH-- 181 (430)
T ss_pred cccceeeeeeC--CC----CcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccC-cccceeec--
Confidence 78899999999 99 99999999 89999999861 1 24566666655 79999999
Q ss_pred ccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC
Q 000602 77 NCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1398)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~ 155 (1398)
|.. .+|++++ |++|++||+..... .+..+.+ ....+|.++.|+| .|.+|++|..
T Consensus 182 -----Pre----~ILiS~srD~tvKlFDfsK~sa------------KrA~K~~-qd~~~vrsiSfHP---sGefllvgTd 236 (430)
T KOG0640|consen 182 -----PRE----TILISGSRDNTVKLFDFSKTSA------------KRAFKVF-QDTEPVRSISFHP---SGEFLLVGTD 236 (430)
T ss_pred -----chh----heEEeccCCCeEEEEecccHHH------------HHHHHHh-hccceeeeEeecC---CCceEEEecC
Confidence 764 5666665 99999999985331 1111222 2446899999999 9999999999
Q ss_pred CCeEEEEEcCCCeEEEEEc--cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000602 156 DNSIRVWDISNSSIILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1398)
Q Consensus 156 Dg~V~vWd~~~~~~~~~l~--~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1398)
..++++||+.+-++..... ..+...+.++.+ ++.+.+-++|+.||.|++||--
T Consensus 237 Hp~~rlYdv~T~QcfvsanPd~qht~ai~~V~Y---s~t~~lYvTaSkDG~IklwDGV---------------------- 291 (430)
T KOG0640|consen 237 HPTLRLYDVNTYQCFVSANPDDQHTGAITQVRY---SSTGSLYVTASKDGAIKLWDGV---------------------- 291 (430)
T ss_pred CCceeEEeccceeEeeecCcccccccceeEEEe---cCCccEEEEeccCCcEEeeccc----------------------
Confidence 9999999999988765433 233445667776 7889999999999999999976
Q ss_pred cceeeecccccceeEEEEE-eCcc-CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccE
Q 000602 234 FKCFKLQDQQHTAVNLFRL-VGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1398)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l-~gH~-~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V 311 (1398)
+++++.++ ..|. ..|.+..|..++++++|.+.|..+++|.+.+++. +....-+-..|....-
T Consensus 292 -----------S~rCv~t~~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~-----l~~YtGAg~tgrq~~r 355 (430)
T KOG0640|consen 292 -----------SNRCVRTIGNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRM-----LKEYTGAGTTGRQKHR 355 (430)
T ss_pred -----------cHHHHHHHHhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCce-----EEEEecCCcccchhhh
Confidence 45555554 3454 4689999999999999999999999999999887 3321101111111122
Q ss_pred EEEEEc--CCEEEEEeC-CCcEEEEcC-CCceEEEE-ecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 312 WDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLKMI-KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 312 ~~l~~s--~~~l~sgs~-Dg~i~vWd~-~g~~l~~l-~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
+...|+ ..+++.-.+ .+.++-||. ++..+..+ .+|.+ ++..+.-+|.+.-++|++.|-.+|+|--
T Consensus 356 tqAvFNhtEdyVl~pDEas~slcsWdaRtadr~~l~slgHn~-a~R~i~HSP~~p~FmTcsdD~raRFWyr 425 (430)
T KOG0640|consen 356 TQAVFNHTEDYVLFPDEASNSLCSWDARTADRVALLSLGHNG-AVRWIVHSPVEPAFMTCSDDFRARFWYR 425 (430)
T ss_pred hhhhhcCccceEEccccccCceeeccccchhhhhhcccCCCC-CceEEEeCCCCCceeeecccceeeeeee
Confidence 334454 456665554 467999999 65555444 46777 7999999999999999999999999965
|
|
| >KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.3e-20 Score=228.05 Aligned_cols=321 Identities=18% Similarity=0.272 Sum_probs=228.6
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEE--CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGT--IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs--~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
.|....++++.. +|++..+++|+ .|+.+.||+.. +... ....++.. -.+.+..+
T Consensus 10 ~H~~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~-----~vl~---------------~~~~~~~~-l~k~l~~m 65 (942)
T KOG0973|consen 10 NHNEKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQD-----PVLD---------------EKEEKNEN-LPKHLCTM 65 (942)
T ss_pred ccCCeeEEEEEe---cCCceeEecCCccccccceeeccc-----cccc---------------hhhhhhcc-cchhheee
Confidence 455555888887 78999999999 99999999987 1110 00011110 24557778
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC----cc------cCCCCceEeeeeEEecCCccEEEEEEc--CCE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE----YW------KDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~----~~------~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~ 320 (1398)
..|.+.|.|+.|+|||++||+||+|+.|.||..... .. ......+.+ ..+.+|...|.+++|+ +.+
T Consensus 66 ~~h~~sv~CVR~S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~--~~l~~H~~DV~Dv~Wsp~~~~ 143 (942)
T KOG0973|consen 66 DDHDGSVNCVRFSPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVV--SILRGHDSDVLDVNWSPDDSL 143 (942)
T ss_pred ccccCceeEEEECCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEE--EEEecCCCccceeccCCCccE
Confidence 899999999999999999999999999999998841 00 001112222 4888999999999999 689
Q ss_pred EEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCc
Q 000602 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRT 398 (1398)
Q Consensus 321 l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~ 398 (1398)
|++++.|++|.||+. +.+.++.+++|.+ .|..+.|+|-|+|||+-+.|++|+||++.. ...+.+..+-.
T Consensus 144 lvS~s~DnsViiwn~~tF~~~~vl~~H~s-~VKGvs~DP~Gky~ASqsdDrtikvwrt~dw~i~k~It~pf~-------- 214 (942)
T KOG0973|consen 144 LVSVSLDNSVIIWNAKTFELLKVLRGHQS-LVKGVSWDPIGKYFASQSDDRTLKVWRTSDWGIEKSITKPFE-------- 214 (942)
T ss_pred EEEecccceEEEEccccceeeeeeecccc-cccceEECCccCeeeeecCCceEEEEEcccceeeEeeccchh--------
Confidence 999999999999999 8899999999999 699999999999999999999999999732 22221111110
Q ss_pred cEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc--CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCC
Q 000602 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN--HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476 (1398)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~--~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~ 476 (1398)
. ..-...++.+.|+|||.+|++.+ ++....+.+-+..+.+...-+-+| ..++.|+.+.+..
T Consensus 215 --------~--------~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~~LvGH-~~p~evvrFnP~l 277 (942)
T KOG0973|consen 215 --------E--------SPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDKDLVGH-SAPVEVVRFNPKL 277 (942)
T ss_pred --------h--------CCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeeeeeecC-CCceEEEEeChHH
Confidence 0 01223688999999999998853 444455555555443322334556 5588888876543
Q ss_pred CCC-----cCCCC----cEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcE
Q 000602 477 PKY-----PCGID----DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1398)
Q Consensus 477 ~~~-----s~~~~----~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I 547 (1398)
..- ..... ..+|+|+.|+.|.||.....+..... ..-....+++ ++|+|||-.|+.++.||+|
T Consensus 278 fe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi------~~lf~~SI~D--msWspdG~~LfacS~DGtV 349 (942)
T KOG0973|consen 278 FERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTALPRPLFVI------HNLFNKSIVD--MSWSPDGFSLFACSLDGTV 349 (942)
T ss_pred hccccccCCccCCCcceEEEEEecCCccEEEEecCCCCchhhh------hhhhcCceee--eeEcCCCCeEEEEecCCeE
Confidence 110 01112 27899999999999998554333211 1112345556 5789999999999999999
Q ss_pred EEEecCCC
Q 000602 548 KLWQLCDP 555 (1398)
Q Consensus 548 ~iWdi~~~ 555 (1398)
.+..++..
T Consensus 350 ~~i~Fee~ 357 (942)
T KOG0973|consen 350 ALIHFEEK 357 (942)
T ss_pred EEEEcchH
Confidence 99998753
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.6e-20 Score=197.12 Aligned_cols=270 Identities=20% Similarity=0.217 Sum_probs=205.0
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-CeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t-g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
....|.+|+|| |. ...++++|+ |++||+|+++. |..+.+....+..+|.+++|+ .||. ..++.
T Consensus 26 P~DsIS~l~FS--P~---~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Ws-------ddgs---kVf~g 90 (347)
T KOG0647|consen 26 PEDSISALAFS--PQ---ADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWS-------DDGS---KVFSG 90 (347)
T ss_pred cccchheeEec--cc---cCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEc-------cCCc---eEEee
Confidence 45779999999 84 256777888 99999999986 566554443344599999999 8872 44445
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
+.|+.+++||+..+ ....+..|.++|.++.|-+. .....|+||+.|.+|+.||.+....+.++
T Consensus 91 ~~Dk~~k~wDL~S~----------------Q~~~v~~Hd~pvkt~~wv~~-~~~~cl~TGSWDKTlKfWD~R~~~pv~t~ 153 (347)
T KOG0647|consen 91 GCDKQAKLWDLASG----------------QVSQVAAHDAPVKTCHWVPG-MNYQCLVTGSWDKTLKFWDTRSSNPVATL 153 (347)
T ss_pred ccCCceEEEEccCC----------------CeeeeeecccceeEEEEecC-CCcceeEecccccceeecccCCCCeeeee
Confidence 55999999999863 34456689999999999871 12348999999999999999999999999
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE-
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL- 252 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l- 252 (1398)
.-|+++ |++.. ...+++.++.+..|.+++++... ....+.
T Consensus 154 ~LPeRv--Ya~Dv-----~~pm~vVata~r~i~vynL~n~~--------------------------------te~k~~~ 194 (347)
T KOG0647|consen 154 QLPERV--YAADV-----LYPMAVVATAERHIAVYNLENPP--------------------------------TEFKRIE 194 (347)
T ss_pred ecccee--eehhc-----cCceeEEEecCCcEEEEEcCCCc--------------------------------chhhhhc
Confidence 989874 55533 34578889999999999997211 111111
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC---------ccEEEEEEcC--CEE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFI 321 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~---------~~V~~l~~s~--~~l 321 (1398)
..-.-.+.+|+..+|....+.|+-.|.+-|..+..+..... ..+.-|. ..|.+++|++ +.|
T Consensus 195 SpLk~Q~R~va~f~d~~~~alGsiEGrv~iq~id~~~~~~n--------FtFkCHR~~~~~~~~VYaVNsi~FhP~hgtl 266 (347)
T KOG0647|consen 195 SPLKWQTRCVACFQDKDGFALGSIEGRVAIQYIDDPNPKDN--------FTFKCHRSTNSVNDDVYAVNSIAFHPVHGTL 266 (347)
T ss_pred CcccceeeEEEEEecCCceEeeeecceEEEEecCCCCccCc--------eeEEEeccCCCCCCceEEecceEeecccceE
Confidence 11234578999999988889999999999999988633211 2333333 3578889996 789
Q ss_pred EEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEE
Q 000602 322 ITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1398)
Q Consensus 322 ~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~lat 365 (1398)
+|+|.||+..+||- ....+++...|.. +|+++.|+.+|.++|-
T Consensus 267 vTaGsDGtf~FWDkdar~kLk~s~~~~q-pItcc~fn~~G~ifaY 310 (347)
T KOG0647|consen 267 VTAGSDGTFSFWDKDARTKLKTSETHPQ-PITCCSFNRNGSIFAY 310 (347)
T ss_pred EEecCCceEEEecchhhhhhhccCcCCC-ccceeEecCCCCEEEE
Confidence 99999999999998 4556777777888 7999999999997654
|
|
| >KOG0288 consensus WD40 repeat protein TipD [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.4e-21 Score=212.45 Aligned_cols=204 Identities=20% Similarity=0.306 Sum_probs=169.3
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe--EEEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS--IILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~--~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
.....+..|.+.|.++.|.+ +...|++|+.|..|++|++...+ .+.++.+. ...+.++.+ .+++..+++.+
T Consensus 166 ~~~~~ld~h~gev~~v~~l~---~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs-~g~it~~d~---d~~~~~~iAas 238 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEFLR---NSDTLATGGSDRIIKLWNVLGEKSELISTLAGS-LGNITSIDF---DSDNKHVIAAS 238 (459)
T ss_pred hhhhhhhccccccceeEEcc---Ccchhhhcchhhhhhhhhcccchhhhhhhhhcc-CCCcceeee---cCCCceEEeec
Confidence 34456778999999999999 88899999999999999997655 34444433 234666766 77889999999
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeE
Q 000602 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1398)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V 280 (1398)
.|+.+++|++. ..+...++.||.+.|+++.|......+++++.|++|
T Consensus 239 ~d~~~r~Wnvd---------------------------------~~r~~~TLsGHtdkVt~ak~~~~~~~vVsgs~DRti 285 (459)
T KOG0288|consen 239 NDKNLRLWNVD---------------------------------SLRLRHTLSGHTDKVTAAKFKLSHSRVVSGSADRTI 285 (459)
T ss_pred CCCceeeeecc---------------------------------chhhhhhhcccccceeeehhhccccceeeccccchh
Confidence 99999999998 677888999999999999999877779999999999
Q ss_pred EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCC
Q 000602 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1398)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spd 359 (1398)
++||+....+ .+. .+ ....+.++...+..+++|..|++||+||. .+.+......+.. |+++..+++
T Consensus 286 K~WDl~k~~C-----~kt----~l--~~S~cnDI~~~~~~~~SgH~DkkvRfwD~Rs~~~~~sv~~gg~--vtSl~ls~~ 352 (459)
T KOG0288|consen 286 KLWDLQKAYC-----SKT----VL--PGSQCNDIVCSISDVISGHFDKKVRFWDIRSADKTRSVPLGGR--VTSLDLSMD 352 (459)
T ss_pred hhhhhhhhhe-----ecc----cc--ccccccceEecceeeeecccccceEEEeccCCceeeEeecCcc--eeeEeeccC
Confidence 9999998766 221 12 23445666666788999999999999998 7788888887763 999999999
Q ss_pred CCEEEEEEcCCcEEEEEcCC
Q 000602 360 SSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 360 g~~latgg~Dg~I~iwdl~~ 379 (1398)
+..|.+.+.|.++.++|+++
T Consensus 353 g~~lLsssRDdtl~viDlRt 372 (459)
T KOG0288|consen 353 GLELLSSSRDDTLKVIDLRT 372 (459)
T ss_pred CeEEeeecCCCceeeeeccc
Confidence 99999999999999999853
|
|
| >KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-20 Score=209.18 Aligned_cols=290 Identities=20% Similarity=0.275 Sum_probs=216.6
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccce
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLS 123 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~ 123 (1398)
+.++.|+-.+--.+. + +.+.|..++|+|.. | .-+|+.+.-.+.||+..+. .
T Consensus 9 ~e~~~w~~~~~~~~~--k--e~~~vssl~fsp~~----P------~d~aVt~S~rvqly~~~~~---------------~ 59 (487)
T KOG0310|consen 9 PEIRYWRQETFPPVH--K--EHNSVSSLCFSPKH----P------YDFAVTSSVRVQLYSSVTR---------------S 59 (487)
T ss_pred ccchhhhhhcccccc--c--ccCcceeEecCCCC----C------CceEEecccEEEEEecchh---------------h
Confidence 456667654432221 1 23479999999432 3 5678888889999998762 3
Q ss_pred eeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCC
Q 000602 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 124 ~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg 203 (1398)
..+++....+.|.++.|-. ||++||.|...|.|+|+|..+...+..+..+.. .+....|. ..++..+++|+.|+
T Consensus 60 ~~k~~srFk~~v~s~~fR~---DG~LlaaGD~sG~V~vfD~k~r~iLR~~~ah~a-pv~~~~f~--~~d~t~l~s~sDd~ 133 (487)
T KOG0310|consen 60 VRKTFSRFKDVVYSVDFRS---DGRLLAAGDESGHVKVFDMKSRVILRQLYAHQA-PVHVTKFS--PQDNTMLVSGSDDK 133 (487)
T ss_pred hhhhHHhhccceeEEEeec---CCeEEEccCCcCcEEEeccccHHHHHHHhhccC-ceeEEEec--ccCCeEEEecCCCc
Confidence 3444556678999999999 999999999999999999766555555555443 45555553 23667888899999
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARI 282 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~i 282 (1398)
.+++||+. +......+.+|++.|.+.+|+|-. ..++|||.||.||+
T Consensus 134 v~k~~d~s---------------------------------~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl 180 (487)
T KOG0310|consen 134 VVKYWDLS---------------------------------TAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRL 180 (487)
T ss_pred eEEEEEcC---------------------------------CcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEE
Confidence 99999998 344466899999999999999954 58899999999999
Q ss_pred EEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEE-EEecccCccEEEEEEcC
Q 000602 283 WEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLYDS 358 (1398)
Q Consensus 283 Wd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~-~l~~h~~~~V~sl~~sp 358 (1398)
||.+..... .....|..+|-++.+- +..|++|+. ..++|||+ .|..+- .+..|.. .|+|+.+..
T Consensus 181 ~DtR~~~~~----------v~elnhg~pVe~vl~lpsgs~iasAgG-n~vkVWDl~~G~qll~~~~~H~K-tVTcL~l~s 248 (487)
T KOG0310|consen 181 WDTRSLTSR----------VVELNHGCPVESVLALPSGSLIASAGG-NSVKVWDLTTGGQLLTSMFNHNK-TVTCLRLAS 248 (487)
T ss_pred EEeccCCce----------eEEecCCCceeeEEEcCCCCEEEEcCC-CeEEEEEecCCceehhhhhcccc-eEEEEEeec
Confidence 999986331 2556799999999986 478888874 57999999 455544 4444777 699999999
Q ss_pred CCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EE
Q 000602 359 LSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1398)
Q Consensus 359 dg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t 437 (1398)
++..|++||-|+.|++||+.. -.-+..+..| ++|-+++.+|+++.++ +.
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~-----------------~Kvv~s~~~~-------------~pvLsiavs~dd~t~viGm 298 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTN-----------------YKVVHSWKYP-------------GPVLSIAVSPDDQTVVIGM 298 (487)
T ss_pred CCceEeecccccceEEEEccc-----------------eEEEEeeecc-------------cceeeEEecCCCceEEEec
Confidence 999999999999999999742 1223333333 4799999999886554 55
Q ss_pred cCCcEE
Q 000602 438 NHGYLY 443 (1398)
Q Consensus 438 ~~g~i~ 443 (1398)
++|-+.
T Consensus 299 snGlv~ 304 (487)
T KOG0310|consen 299 SNGLVS 304 (487)
T ss_pred ccceee
Confidence 666554
|
|
| >KOG0283 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=1.7e-20 Score=224.19 Aligned_cols=269 Identities=12% Similarity=0.141 Sum_probs=202.6
Q ss_pred eEEEEEE-eeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCC------------------------
Q 000602 55 TLIRPFQ-VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL------------------------ 108 (1398)
Q Consensus 55 ~~l~~~~-~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~------------------------ 108 (1398)
...+.+. .|.+ .|++|.|| +|| ++||++| |+.|+||.+...+
T Consensus 257 ~~~Qe~~~ah~g-aIw~mKFS-------~DG----KyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p 324 (712)
T KOG0283|consen 257 TVVQEISNAHKG-AIWAMKFS-------HDG----KYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEP 324 (712)
T ss_pred EEeeccccccCC-cEEEEEeC-------CCC----ceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCc
Confidence 3345556 5666 79999999 999 7999988 9999999986400
Q ss_pred ---CC-----------CCCCCCc-------ccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC
Q 000602 109 ---SP-----------NSQYQPE-------TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1398)
Q Consensus 109 ---~~-----------~~~~~~~-------~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~ 167 (1398)
.. .....+. ..+..++++.+.||.+.|.++.|+. ..+|++++.|.|||+|++...
T Consensus 325 ~~s~~~~~~~~~s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK----n~fLLSSSMDKTVRLWh~~~~ 400 (712)
T KOG0283|consen 325 STSSEEKISSRTSSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK----NNFLLSSSMDKTVRLWHPGRK 400 (712)
T ss_pred cccccccccccccccccccCCccccCCCccccccccchhhhhccchhheeccccc----CCeeEeccccccEEeecCCCc
Confidence 00 0000000 1113467888999999999999994 567889999999999999999
Q ss_pred eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000602 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1398)
Q Consensus 168 ~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1398)
.++..+... ..+.+++|++. |..++++|+.||.|+||++. ..+
T Consensus 401 ~CL~~F~Hn--dfVTcVaFnPv--DDryFiSGSLD~KvRiWsI~---------------------------------d~~ 443 (712)
T KOG0283|consen 401 ECLKVFSHN--DFVTCVAFNPV--DDRYFISGSLDGKVRLWSIS---------------------------------DKK 443 (712)
T ss_pred ceeeEEecC--CeeEEEEeccc--CCCcEeecccccceEEeecC---------------------------------cCe
Confidence 999988644 46889999754 78899999999999999997 122
Q ss_pred EEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEE
Q 000602 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA 324 (1398)
Q Consensus 248 ~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sg 324 (1398)
+.....-..-|++++|.|||++.+.|+.+|.+++|+....+......+..-. ..-..|. +|+.+.|. +..++..
T Consensus 444 -Vv~W~Dl~~lITAvcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~-~Kk~~~~-rITG~Q~~p~~~~~vLVT 520 (712)
T KOG0283|consen 444 -VVDWNDLRDLITAVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHN-KKKKQGK-RITGLQFFPGDPDEVLVT 520 (712)
T ss_pred -eEeehhhhhhheeEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeecc-CccccCc-eeeeeEecCCCCCeEEEe
Confidence 2222233478999999999999999999999999999887652100011000 0111233 89999997 3568888
Q ss_pred eCCCcEEEEcC-CCceEEEEecccCc-cEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 325 GEDCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 325 s~Dg~i~vWd~-~g~~l~~l~~h~~~-~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
+.|..|||+|. +.+.+..|+++... .=....|+.||++|++++.|..|++|++..
T Consensus 521 SnDSrIRI~d~~~~~lv~KfKG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~ 577 (712)
T KOG0283|consen 521 SNDSRIRIYDGRDKDLVHKFKGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDS 577 (712)
T ss_pred cCCCceEEEeccchhhhhhhcccccCCcceeeeEccCCCEEEEeecCceEEEEeCCC
Confidence 89999999999 77788888876532 224567999999999999999999999853
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.3e-19 Score=218.66 Aligned_cols=270 Identities=9% Similarity=0.062 Sum_probs=193.9
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEE-------------EEEEeeeCccEEEEEEeccccccC
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLI-------------RPFQVFHGIRLHGISCNFINCTEG 81 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l-------------~~~~~~~~~~V~~i~fs~~~~~~~ 81 (1398)
+...|...+++ +| +..++++. +.....|+...+..+ ..+.+|.+ .|.+++|+
T Consensus 19 ~~~~i~~~~~~--~d----~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~-~V~~v~fs------- 84 (493)
T PTZ00421 19 HFLNVTPSTAL--WD----CSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEG-PIIDVAFN------- 84 (493)
T ss_pred ceecccccccc--CC----CCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCC-CEEEEEEc-------
Confidence 44556666666 66 33344433 455556665443222 13556665 79999999
Q ss_pred C-CCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC-cEEEEEECCCe
Q 000602 82 S-VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNS 158 (1398)
Q Consensus 82 p-dg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg-~~Latgs~Dg~ 158 (1398)
| ++ .+|++++ |++|++||+........ ....+..+.+|...|.+++|+| ++ .+|++|+.|++
T Consensus 85 P~d~----~~LaSgS~DgtIkIWdi~~~~~~~~--------~~~~l~~L~gH~~~V~~l~f~P---~~~~iLaSgs~Dgt 149 (493)
T PTZ00421 85 PFDP----QKLFTASEDGTIMGWGIPEEGLTQN--------ISDPIVHLQGHTKKVGIVSFHP---SAMNVLASAGADMV 149 (493)
T ss_pred CCCC----CEEEEEeCCCEEEEEecCCCccccc--------cCcceEEecCCCCcEEEEEeCc---CCCCEEEEEeCCCE
Confidence 7 55 4556554 99999999975321000 1245667889999999999999 65 68999999999
Q ss_pred EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000602 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1398)
Q Consensus 159 V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1398)
|+|||+.+++.+..+..+.. .++++.| ++++.+|++++.|+.|++||++
T Consensus 150 VrIWDl~tg~~~~~l~~h~~-~V~sla~---spdG~lLatgs~Dg~IrIwD~r--------------------------- 198 (493)
T PTZ00421 150 VNVWDVERGKAVEVIKCHSD-QITSLEW---NLDGSLLCTTSKDKKLNIIDPR--------------------------- 198 (493)
T ss_pred EEEEECCCCeEEEEEcCCCC-ceEEEEE---ECCCCEEEEecCCCEEEEEECC---------------------------
Confidence 99999999988888876554 4778887 6789999999999999999998
Q ss_pred ecccccceeEEEEEeCccCC-EEEEEEcCCCCEEEEEE----CCCeEEEEEcCCCcccCCCCceEeeeeEEecC-CccEE
Q 000602 239 LQDQQHTAVNLFRLVGHEGS-IFRIEWSSCGSKLVSVS----DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH-NARVW 312 (1398)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~-I~~vafspdg~~LaS~s----~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh-~~~V~ 312 (1398)
+++.+..+.+|.+. +..+.|.+++..+++++ .|+.|++||+++.... .. ....+ ...+.
T Consensus 199 ------sg~~v~tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p----~~-----~~~~d~~~~~~ 263 (493)
T PTZ00421 199 ------DGTIVSSVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASP----YS-----TVDLDQSSALF 263 (493)
T ss_pred ------CCcEEEEEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCc----ee-----EeccCCCCceE
Confidence 56677788889865 45788999888887764 4799999999875431 11 22222 33455
Q ss_pred EEEEc--CCEEEEEe-CCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCC
Q 000602 313 DCCLT--DSFIITAG-EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 313 ~l~~s--~~~l~sgs-~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg 360 (1398)
...|+ +++|++++ .|+.|++||+ +++.+.........++..++|.|..
T Consensus 264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~g~~~~pk~ 315 (493)
T PTZ00421 264 IPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHKGLCMMPKW 315 (493)
T ss_pred EEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCcceEecccc
Confidence 55665 57888887 5999999999 7777666655444467888888854
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.86 E-value=6.3e-19 Score=178.28 Aligned_cols=291 Identities=16% Similarity=0.251 Sum_probs=209.7
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCC----CCCCCCCCCcccccceeeeecccCCCcEEEEE
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFE----LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~----~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 139 (1398)
...|..++|+ |.| .+.++++ .++++|-....- ...+.+-+| ..-+.+.-+.|.+.|.|.+
T Consensus 32 sqairav~fh-------p~g----~lyavgsnskt~ric~yp~l~~~r~~hea~~~p----p~v~~kr~khhkgsiyc~~ 96 (350)
T KOG0641|consen 32 SQAIRAVAFH-------PAG----GLYAVGSNSKTFRICAYPALIDLRHAHEAAKQP----PSVLCKRNKHHKGSIYCTA 96 (350)
T ss_pred hhheeeEEec-------CCC----ceEEeccCCceEEEEccccccCcccccccccCC----CeEEeeeccccCccEEEEE
Confidence 4579999999 998 5777766 688888754321 111111111 1233445567899999999
Q ss_pred EEeecCCCcEEEEEECCCeEEEEEcCCCeEE-----EEEccCCcceEEEEEeecCCCC-CcEEEEE-ECCCeEEEEEccc
Q 000602 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSII-----LEVHSPERCLLYSMKLWGDNLE-ALRIASG-TIYNEIIVWKVDW 212 (1398)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~-----~~l~~~~~~~~~s~~~~~~s~d-~~~lasg-s~dg~I~vWd~~~ 212 (1398)
|+| +|.+||+|+.|.+|++.-+....+. .++.-+ ...+..++|...+.. +.+|+++ ..|..|++=|..
T Consensus 97 ws~---~geliatgsndk~ik~l~fn~dt~~~~g~dle~nmh-dgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~- 171 (350)
T KOG0641|consen 97 WSP---CGELIATGSNDKTIKVLPFNADTCNATGHDLEFNMH-DGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCG- 171 (350)
T ss_pred ecC---ccCeEEecCCCceEEEEecccccccccCcceeeeec-CCceeeeEEecCCCcCceEEEecCCCcceEEEeecC-
Confidence 999 9999999999999999766543221 122222 234666777655433 4455554 456778887877
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
.++.++.+.||++.|.++ ++=++-++++||.|.+||+||++-..+
T Consensus 172 --------------------------------~g~~~~a~sghtghilal-yswn~~m~~sgsqdktirfwdlrv~~~-- 216 (350)
T KOG0641|consen 172 --------------------------------RGQGFHALSGHTGHILAL-YSWNGAMFASGSQDKTIRFWDLRVNSC-- 216 (350)
T ss_pred --------------------------------CCCcceeecCCcccEEEE-EEecCcEEEccCCCceEEEEeeeccce--
Confidence 788899999999999987 345688999999999999999998766
Q ss_pred CCCceEeeeeEEec---CCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEE
Q 000602 293 SDSIEEVGSSVLYG---HNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1398)
Q Consensus 293 ~~~~~~i~~~~~~g---h~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latg 366 (1398)
+..+.. .+.+ ....|.+++.. +++|++|-.|..+.+||+ .+++++.+..|..+ |.++.|+|...|++|+
T Consensus 217 ---v~~l~~-~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~iq~f~phsad-ir~vrfsp~a~yllt~ 291 (350)
T KOG0641|consen 217 ---VNTLDN-DFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRMIQRFHPHSAD-IRCVRFSPGAHYLLTC 291 (350)
T ss_pred ---eeeccC-cccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCceeeeeCCCccc-eeEEEeCCCceEEEEe
Confidence 443321 2222 12467777776 689999999999999999 78899999999995 9999999999999999
Q ss_pred EcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC
Q 000602 367 GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1398)
Q Consensus 367 g~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g 440 (1398)
+.|..|++-|+++.+.+.+. +. ...+|...+-.+.|.|..--+++++..
T Consensus 292 syd~~ikltdlqgdla~el~-------------~~------------vv~ehkdk~i~~rwh~~d~sfisssad 340 (350)
T KOG0641|consen 292 SYDMKIKLTDLQGDLAHELP-------------IM------------VVAEHKDKAIQCRWHPQDFSFISSSAD 340 (350)
T ss_pred cccceEEEeecccchhhcCc-------------eE------------EEEeccCceEEEEecCccceeeeccCc
Confidence 99999999999876443322 11 222466677788899987555555433
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.86 E-value=2.5e-21 Score=208.84 Aligned_cols=276 Identities=17% Similarity=0.252 Sum_probs=214.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|...|.|+|=+ |. .-..+|+|+ ||.|+|||+....++.+|+.|.+ .|.||++. .. .++.++
T Consensus 65 HrdGV~~lakh--p~---~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G-~V~Gi~v~-------~~-----~~~tvg 126 (433)
T KOG0268|consen 65 HRDGVSCLAKH--PN---KLSTVASGSCDGEVKIWNLSQRECIRTFKAHEG-LVRGICVT-------QT-----SFFTVG 126 (433)
T ss_pred cccccchhhcC--cc---hhhhhhccccCceEEEEehhhhhhhheeecccC-ceeeEEec-------cc-----ceEEec
Confidence 67789999988 86 225788888 89999999999999999999888 79999998 42 678888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.|++|+.|.++. .+.+++.+. ..+..+.-+. .+..+||+|. .|.|||.....++.++.
T Consensus 127 dDKtvK~wk~~~----------------~p~~tilg~-s~~~gIdh~~---~~~~FaTcGe--~i~IWD~~R~~Pv~sms 184 (433)
T KOG0268|consen 127 DDKTVKQWKIDG----------------PPLHTILGK-SVYLGIDHHR---KNSVFATCGE--QIDIWDEQRDNPVSSMS 184 (433)
T ss_pred CCcceeeeeccC----------------Ccceeeecc-cccccccccc---ccccccccCc--eeeecccccCCccceee
Confidence 899999999874 234444432 4466666665 6677888875 49999998888887776
Q ss_pred cCCcceEEEEEeecCCC-CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 175 SPERCLLYSMKLWGDNL-EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~-d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
-.... +.++.| +| ....|+++..|+.|.++|++ ...+++.+.
T Consensus 185 wG~Dt-i~svkf---NpvETsILas~~sDrsIvLyD~R---------------------------------~~~Pl~KVi 227 (433)
T KOG0268|consen 185 WGADS-ISSVKF---NPVETSILASCASDRSIVLYDLR---------------------------------QASPLKKVI 227 (433)
T ss_pred cCCCc-eeEEec---CCCcchheeeeccCCceEEEecc---------------------------------cCCccceee
Confidence 44432 445555 33 34567778899999999999 344443332
Q ss_pred CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEE
Q 000602 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 254 gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~ 331 (1398)
-...-+.|+|+|++--++++++|..+..+|++.... ++ ....+|...|.++.|+ |+-|++||.|.+||
T Consensus 228 -~~mRTN~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------p~--~v~~dhvsAV~dVdfsptG~EfvsgsyDksIR 297 (433)
T KOG0268|consen 228 -LTMRTNTICWNPEAFNFVAANEDHNLYTYDMRNLSR-------PL--NVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIR 297 (433)
T ss_pred -eeccccceecCccccceeeccccccceehhhhhhcc-------cc--hhhcccceeEEEeccCCCcchhccccccceEE
Confidence 234457899999888899999999999999987544 22 2778999999999999 68999999999999
Q ss_pred EEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
||.. .+.....+..-.-..|.++.|+.|.+++++|+.|+.||+|...
T Consensus 298 If~~~~~~SRdiYhtkRMq~V~~Vk~S~Dskyi~SGSdd~nvRlWka~ 345 (433)
T KOG0268|consen 298 IFPVNHGHSRDIYHTKRMQHVFCVKYSMDSKYIISGSDDGNVRLWKAK 345 (433)
T ss_pred EeecCCCcchhhhhHhhhheeeEEEEeccccEEEecCCCcceeeeecc
Confidence 9999 4443333332222369999999999999999999999999984
|
|
| >KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown] | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.7e-20 Score=207.50 Aligned_cols=310 Identities=15% Similarity=0.203 Sum_probs=210.4
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe----EEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS----IILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~----~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
.......+++|+..|.++++.| .|.+|++|+.|.+|++||+.... ..+.+...+...+.++.| ++.+..|
T Consensus 156 P~shEi~l~hgtk~Vsal~~Dp---~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~y---s~Tg~~i 229 (641)
T KOG0772|consen 156 PGSHEIQLKHGTKIVSALAVDP---SGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQY---SVTGDQI 229 (641)
T ss_pred CccceEeccCCceEEEEeeecC---CCceeeeccccceEEEEecccccccchhhhccCcccccccceeee---cCCCCeE
Confidence 4556677889999999999999 99999999999999999997543 234444444555667777 6778888
Q ss_pred EEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEE
Q 000602 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVS 275 (1398)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s 275 (1398)
++.+...+.+|+|-...+.... ..+... -.-+...+||...+++.+|+|+. ..++|++
T Consensus 230 Lvvsg~aqakl~DRdG~~~~e~--------------~KGDQY-------I~Dm~nTKGHia~lt~g~whP~~k~~FlT~s 288 (641)
T KOG0772|consen 230 LVVSGSAQAKLLDRDGFEIVEF--------------SKGDQY-------IRDMYNTKGHIAELTCGCWHPDNKEEFLTCS 288 (641)
T ss_pred EEEecCcceeEEccCCceeeee--------------eccchh-------hhhhhccCCceeeeeccccccCcccceEEec
Confidence 8888888999999762111000 000000 11123457999999999999965 5789999
Q ss_pred CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCC---ceE-EEEecccC-
Q 000602 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG---KQL-KMIKEHIG- 348 (1398)
Q Consensus 276 ~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g---~~l-~~l~~h~~- 348 (1398)
.||++||||+...+.. .+.+++....+..-.+..++|+ +.+|++|+.||.|.+|+..+ .+. ..-..|..
T Consensus 289 ~DgtlRiWdv~~~k~q----~qVik~k~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g 364 (641)
T KOG0772|consen 289 YDGTLRIWDVNNTKSQ----LQVIKTKPAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPG 364 (641)
T ss_pred CCCcEEEEecCCchhh----eeEEeeccCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCC
Confidence 9999999999876542 4444433334555578999998 68899999999999999722 222 22234433
Q ss_pred ccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC--CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEE
Q 000602 349 RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA--FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1398)
Q Consensus 349 ~~V~sl~~spdg~~latgg~Dg~I~iwdl~~--~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~la 426 (1398)
..|+||+|+++|++|++-|.|+++++||++. +.+....+.. ....-+..+
T Consensus 365 ~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~----------------------------t~~~~tdc~ 416 (641)
T KOG0772|consen 365 QDITSISFSYDGNYLLSRGFDDTLKVWDLRQFKKPLNVRTGLP----------------------------TPFPGTDCC 416 (641)
T ss_pred CceeEEEeccccchhhhccCCCceeeeeccccccchhhhcCCC----------------------------ccCCCCccc
Confidence 2599999999999999999999999999953 2332222211 112346778
Q ss_pred EecCCeEEEEEc-------CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEE
Q 000602 427 LTSEDTLYIATN-------HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIV 499 (1398)
Q Consensus 427 fs~dg~llv~t~-------~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iw 499 (1398)
|+|+.++++++. .|.+++ ++..+ +..+....- ....+..+.|. |.-+.|.+|+.||.+++|
T Consensus 417 FSPd~kli~TGtS~~~~~~~g~L~f---~d~~t--~d~v~ki~i-~~aSvv~~~Wh------pkLNQi~~gsgdG~~~vy 484 (641)
T KOG0772|consen 417 FSPDDKLILTGTSAPNGMTAGTLFF---FDRMT--LDTVYKIDI-STASVVRCLWH------PKLNQIFAGSGDGTAHVY 484 (641)
T ss_pred cCCCceEEEecccccCCCCCceEEE---Eeccc--eeeEEEecC-CCceEEEEeec------chhhheeeecCCCceEEE
Confidence 999998888753 244443 33222 222332221 12233333332 445678999999999987
Q ss_pred EE
Q 000602 500 RV 501 (1398)
Q Consensus 500 d~ 501 (1398)
--
T Consensus 485 Yd 486 (641)
T KOG0772|consen 485 YD 486 (641)
T ss_pred EC
Confidence 43
|
|
| >PTZ00421 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3e-19 Score=217.64 Aligned_cols=226 Identities=14% Similarity=0.120 Sum_probs=169.5
Q ss_pred eccceEEEEEEecC-CCCCCCCEEEEEe-CCcEEEEECCCC-------eEEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 16 YLGEISALCFVHLP-SHLSSLPFLLAGS-GSQVLLYDLEAG-------TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 16 h~~~Vtalafs~~p-d~~~~g~lLaag~-dg~I~Iwd~~tg-------~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
|.++|++++|+ | + +.+|++|+ |++|+|||+.++ ..+..+.+|.. +|.+++|+ |++.
T Consensus 74 H~~~V~~v~fs--P~d----~~~LaSgS~DgtIkIWdi~~~~~~~~~~~~l~~L~gH~~-~V~~l~f~-------P~~~- 138 (493)
T PTZ00421 74 QEGPIIDVAFN--PFD----PQKLFTASEDGTIMGWGIPEEGLTQNISDPIVHLQGHTK-KVGIVSFH-------PSAM- 138 (493)
T ss_pred CCCCEEEEEEc--CCC----CCEEEEEeCCCEEEEEecCCCccccccCcceEEecCCCC-cEEEEEeC-------cCCC-
Confidence 78899999999 9 6 67888888 899999999765 34667777765 89999999 7642
Q ss_pred ceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 87 ~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
.+|++++ |++|+|||++. .+....+.+|.+.|.+++|+| ++.+|++++.|++|++||++
T Consensus 139 --~iLaSgs~DgtVrIWDl~t---------------g~~~~~l~~h~~~V~sla~sp---dG~lLatgs~Dg~IrIwD~r 198 (493)
T PTZ00421 139 --NVLASAGADMVVNVWDVER---------------GKAVEVIKCHSDQITSLEWNL---DGSLLCTTSKDKKLNIIDPR 198 (493)
T ss_pred --CEEEEEeCCCEEEEEECCC---------------CeEEEEEcCCCCceEEEEEEC---CCCEEEEecCCCEEEEEECC
Confidence 4666655 99999999985 455677889999999999999 99999999999999999999
Q ss_pred CCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE----CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 166 NSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 166 ~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs----~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
+++.+..+..+.......+.+ .+++..+++++ .|++|++||++.
T Consensus 199 sg~~v~tl~~H~~~~~~~~~w---~~~~~~ivt~G~s~s~Dr~VklWDlr~----------------------------- 246 (493)
T PTZ00421 199 DGTIVSSVEAHASAKSQRCLW---AKRKDLIITLGCSKSQQRQIMLWDTRK----------------------------- 246 (493)
T ss_pred CCcEEEEEecCCCCcceEEEE---cCCCCeEEEEecCCCCCCeEEEEeCCC-----------------------------
Confidence 999888887765543333333 34455666543 479999999971
Q ss_pred cccceeEEEEEeC-ccCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCC
Q 000602 242 QQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1398)
Q Consensus 242 ~~~~~~~~~~l~g-H~~~I~~vafspdg~~LaS~s-~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~ 319 (1398)
...++..... +...+....|++++++|++++ .|+.|++||+.++.. .. .....+...+..++|.++
T Consensus 247 ---~~~p~~~~~~d~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~-----~~----~~~~~s~~~~~g~~~~pk 314 (493)
T PTZ00421 247 ---MASPYSTVDLDQSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERL-----TF----CSSYSSVEPHKGLCMMPK 314 (493)
T ss_pred ---CCCceeEeccCCCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCce-----EE----EeeccCCCCCcceEeccc
Confidence 1223333332 334566778999999999887 599999999998754 22 122334556677777754
Q ss_pred E
Q 000602 320 F 320 (1398)
Q Consensus 320 ~ 320 (1398)
.
T Consensus 315 ~ 315 (493)
T PTZ00421 315 W 315 (493)
T ss_pred c
Confidence 3
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.85 E-value=7.2e-19 Score=214.85 Aligned_cols=252 Identities=10% Similarity=0.082 Sum_probs=182.5
Q ss_pred CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCccccc
Q 000602 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1398)
Q Consensus 43 dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~ 121 (1398)
.+.|++|+......+..+.+|.+ .|.+++|+ |+. ..+|++++ |++|+|||+......... .
T Consensus 53 ~gvI~L~~~~r~~~v~~L~gH~~-~V~~lafs-------P~~---~~lLASgS~DgtIrIWDi~t~~~~~~~-------i 114 (568)
T PTZ00420 53 IGAIRLENQMRKPPVIKLKGHTS-SILDLQFN-------PCF---SEILASGSEDLTIRVWEIPHNDESVKE-------I 114 (568)
T ss_pred eeEEEeeecCCCceEEEEcCCCC-CEEEEEEc-------CCC---CCEEEEEeCCCeEEEEECCCCCccccc-------c
Confidence 47899999888788888888776 79999999 762 15666655 999999999753210000 0
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcE-EEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~-Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
...+..+.+|...|.+++|+| ++.. |++++.|++|+|||+.+++.+..+..+ ..+.++.| ++++.+|++++
T Consensus 115 ~~p~~~L~gH~~~V~sVaf~P---~g~~iLaSgS~DgtIrIWDl~tg~~~~~i~~~--~~V~Slsw---spdG~lLat~s 186 (568)
T PTZ00420 115 KDPQCILKGHKKKISIIDWNP---MNYYIMCSSGFDSFVNIWDIENEKRAFQINMP--KKLSSLKW---NIKGNLLSGTC 186 (568)
T ss_pred ccceEEeecCCCcEEEEEECC---CCCeEEEEEeCCCeEEEEECCCCcEEEEEecC--CcEEEEEE---CCCCCEEEEEe
Confidence 124456789999999999999 7765 578999999999999999877766532 35778887 78899999999
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEE-----EEEcCCCCEEEEEE
Q 000602 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR-----IEWSSCGSKLVSVS 275 (1398)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~-----vafspdg~~LaS~s 275 (1398)
.|+.|++||++ ++..+..+.+|.+.+.. ..|++++.+|++++
T Consensus 187 ~D~~IrIwD~R---------------------------------sg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG 233 (568)
T PTZ00420 187 VGKHMHIIDPR---------------------------------KQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTG 233 (568)
T ss_pred cCCEEEEEECC---------------------------------CCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEE
Confidence 99999999998 56677888999886543 34568999999988
Q ss_pred CC----CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEecc-cC
Q 000602 276 DD----RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEH-IG 348 (1398)
Q Consensus 276 ~D----g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h-~~ 348 (1398)
.| +.|+|||++..... +.. ..+..+.+.+...... +.++++|+.|++|++|++....+..+... ..
T Consensus 234 ~d~~~~R~VkLWDlr~~~~p----l~~---~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~ 306 (568)
T PTZ00420 234 FSKNNMREMKLWDLKNTTSA----LVT---MSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSC 306 (568)
T ss_pred cCCCCccEEEEEECCCCCCc----eEE---EEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccC
Confidence 77 47999999863321 211 1222233333222222 56888999999999999943334333322 23
Q ss_pred ccEEEEEEcCCC
Q 000602 349 RGIWRCLYDSLS 360 (1398)
Q Consensus 349 ~~V~sl~~spdg 360 (1398)
.++.+++|.|+.
T Consensus 307 ~p~~g~~f~Pkr 318 (568)
T PTZ00420 307 SPFRSFGFLPKQ 318 (568)
T ss_pred CCccceEEcccc
Confidence 368889999864
|
|
| >KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=203.49 Aligned_cols=291 Identities=16% Similarity=0.163 Sum_probs=218.6
Q ss_pred eEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEe
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAG 325 (1398)
Q Consensus 247 ~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs 325 (1398)
..+..+.||.+.|.+++=+|.. ..++||+.||.|+|||+.+..+ . ..+..|.+.|..+++....++++|
T Consensus 57 PFv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~-----~-----~~f~AH~G~V~Gi~v~~~~~~tvg 126 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQREC-----I-----RTFKAHEGLVRGICVTQTSFFTVG 126 (433)
T ss_pred cchhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhh-----h-----heeecccCceeeEEecccceEEec
Confidence 3466789999999999999977 7899999999999999999776 2 488999999999999989999999
Q ss_pred CCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeee
Q 000602 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKI 405 (1398)
Q Consensus 326 ~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~ 405 (1398)
.|.+|+.|.+++.++.++.+... +..+.-+..+..++|+|. .|.|||....
T Consensus 127 dDKtvK~wk~~~~p~~tilg~s~--~~gIdh~~~~~~FaTcGe--~i~IWD~~R~------------------------- 177 (433)
T KOG0268|consen 127 DDKTVKQWKIDGPPLHTILGKSV--YLGIDHHRKNSVFATCGE--QIDIWDEQRD------------------------- 177 (433)
T ss_pred CCcceeeeeccCCcceeeecccc--ccccccccccccccccCc--eeeecccccC-------------------------
Confidence 99999999998888888876654 778887777888999987 4899998421
Q ss_pred CCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCc
Q 000602 406 PNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485 (1398)
Q Consensus 406 ~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~ 485 (1398)
.+++++.|--|. |.++.+. +....
T Consensus 178 --------------~Pv~smswG~Dt-----------------------------------i~svkfN-------pvETs 201 (433)
T KOG0268|consen 178 --------------NPVSSMSWGADS-----------------------------------ISSVKFN-------PVETS 201 (433)
T ss_pred --------------CccceeecCCCc-----------------------------------eeEEecC-------CCcch
Confidence 122333222211 1111111 11234
Q ss_pred EEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCc
Q 000602 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1398)
Q Consensus 486 ~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~ 565 (1398)
+|+++..|+.|.+||+..+..+.++.+. .. .+ -+||+|.+-.+++++.|..++.+|+.....
T Consensus 202 ILas~~sDrsIvLyD~R~~~Pl~KVi~~--mR----TN----~IswnPeafnF~~a~ED~nlY~~DmR~l~~-------- 263 (433)
T KOG0268|consen 202 ILASCASDRSIVLYDLRQASPLKKVILT--MR----TN----TICWNPEAFNFVAANEDHNLYTYDMRNLSR-------- 263 (433)
T ss_pred heeeeccCCceEEEecccCCccceeeee--cc----cc----ceecCccccceeeccccccceehhhhhhcc--------
Confidence 6888889999999999988766543321 11 11 157889655577889999999999885321
Q ss_pred cceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEE
Q 000602 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSV 645 (1398)
Q Consensus 566 ~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~ 645 (1398)
|-..-.+|...|+.++|||.|+-+++|+-|.+|+||.++.+. .+.+.--.. -..|.+|.|
T Consensus 264 ------p~~v~~dhvsAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~--------SRdiYhtkR------Mq~V~~Vk~ 323 (433)
T KOG0268|consen 264 ------PLNVHKDHVSAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGH--------SRDIYHTKR------MQHVFCVKY 323 (433)
T ss_pred ------cchhhcccceeEEEeccCCCcchhccccccceEEEeecCCCc--------chhhhhHhh------hheeeEEEE
Confidence 112235899999999999999999999999999999998641 111100000 156999999
Q ss_pred EeeCCCceEEEEEcCCccEEEEEEecCC
Q 000602 646 AKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1398)
Q Consensus 646 ~~~~~~~~~L~S~g~DG~i~iw~~~~~~ 673 (1398)
+ -|..|+++||.|+.|++|+....+
T Consensus 324 S---~Dskyi~SGSdd~nvRlWka~Ase 348 (433)
T KOG0268|consen 324 S---MDSKYIISGSDDGNVRLWKAKASE 348 (433)
T ss_pred e---ccccEEEecCCCcceeeeecchhh
Confidence 9 567999999999999999977653
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.85 E-value=8.1e-20 Score=203.45 Aligned_cols=291 Identities=13% Similarity=0.185 Sum_probs=218.8
Q ss_pred EEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcc---cccceeeeec-ccCCC
Q 000602 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPET---CVNLSLVQSL-PRLSH 133 (1398)
Q Consensus 58 ~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~---~~~~~~~~~l-~~h~~ 133 (1398)
..+..|.. +|.+++++ |++. +.+.++.+++|.=|++.++.... .+.+.. ...+...+.- ++|..
T Consensus 136 ~~~~~H~~-s~~~vals-------~d~~---~~fsask~g~i~kw~v~tgk~~~-~i~~~~ev~k~~~~~~k~~r~~h~k 203 (479)
T KOG0299|consen 136 RVIGKHQL-SVTSVALS-------PDDK---RVFSASKDGTILKWDVLTGKKDR-YIIERDEVLKSHGNPLKESRKGHVK 203 (479)
T ss_pred eeeccccC-cceEEEee-------cccc---ceeecCCCcceeeeehhcCcccc-cccccchhhhhccCCCCcccccccc
Confidence 34444554 79999999 8872 55666669999999998644111 111110 0011111111 48999
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
.|.+++.+| ||++||+|+.|..|.||+.++.+.+..+.++.+ .+.+++|. .....+++++.|+.|++|+++
T Consensus 204 eil~~avS~---Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~-~V~~L~fr---~gt~~lys~s~Drsvkvw~~~-- 274 (479)
T KOG0299|consen 204 EILTLAVSS---DGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRG-AVSSLAFR---KGTSELYSASADRSVKVWSID-- 274 (479)
T ss_pred eeEEEEEcC---CCcEEEecCCCceEEEecCcccchhhccccccc-ceeeeeee---cCccceeeeecCCceEEEehh--
Confidence 999999999 999999999999999999999999988776654 56777773 345679999999999999998
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCC
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~ 293 (1398)
....+.++.||.+.|.+|.-..-++.+-.|+.|+++++|++.....
T Consensus 275 -------------------------------~~s~vetlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesq--- 320 (479)
T KOG0299|consen 275 -------------------------------QLSYVETLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQ--- 320 (479)
T ss_pred -------------------------------HhHHHHHHhCCccceeeechhcccceEEeccccceeEEEeccccce---
Confidence 5566778899999999999887777777777999999999966544
Q ss_pred CCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcC-CCceEEEEec-cc--C--------ccEEEEEEcCCC
Q 000602 294 DSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE-HI--G--------RGIWRCLYDSLS 360 (1398)
Q Consensus 294 ~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~-h~--~--------~~V~sl~~spdg 360 (1398)
..+.+|.+.+-|++|. ...+++|+.||.|.+|++ ..+++.+.+. |. . .-|++++..|..
T Consensus 321 --------lifrg~~~sidcv~~In~~HfvsGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~s 392 (479)
T KOG0299|consen 321 --------LIFRGGEGSIDCVAFINDEHFVSGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGS 392 (479)
T ss_pred --------eeeeCCCCCeeeEEEecccceeeccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEecccC
Confidence 3788999999999997 789999999999999999 7777776542 21 0 148899999999
Q ss_pred CEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEE
Q 000602 361 SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t 437 (1398)
.++++|+.+|.||+|.+.... +.+ ..++.+. -.+.|++++|+++|+.++++
T Consensus 393 dL~asGS~~G~vrLW~i~~g~-r~i------------~~l~~ls-------------~~GfVNsl~f~~sgk~ivag 443 (479)
T KOG0299|consen 393 DLLASGSWSGCVRLWKIEDGL-RAI------------NLLYSLS-------------LVGFVNSLAFSNSGKRIVAG 443 (479)
T ss_pred ceEEecCCCCceEEEEecCCc-ccc------------ceeeecc-------------cccEEEEEEEccCCCEEEEe
Confidence 999999999999999994321 000 0111221 22579999999999855544
|
|
| >KOG0300 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.2e-19 Score=191.82 Aligned_cols=323 Identities=16% Similarity=0.297 Sum_probs=231.1
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
.++++.+.||.+.||.++-.. ....+.+++.|.+.+||.++++.++.++.+|.++ +.++.| .+.+.++++++.
T Consensus 138 ~~lvre~~GHkDGiW~Vaa~~---tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GS-VNsikf---h~s~~L~lTaSG 210 (481)
T KOG0300|consen 138 FRLVRELEGHKDGIWHVAADS---TQPICGTASADHTARIWSLESGACLATYTGHTGS-VNSIKF---HNSGLLLLTASG 210 (481)
T ss_pred Eeehhhhcccccceeeehhhc---CCcceeecccccceeEEeeccccceeeecccccc-eeeEEe---ccccceEEEccC
Confidence 567778889999999999877 7778999999999999999999999999988764 678887 567899999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCC-------CCCCC-CcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHA-------HGSSS-DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~-------~~~~~-~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS 273 (1398)
|++-.||...-.--.|....+...+. +.... .++..+ .+...-..++..+.||.+.|.+..|...|+.+++
T Consensus 211 D~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~-sD~~tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT 289 (481)
T KOG0300|consen 211 DETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEK-SDGHTIRVPLMRLTGHRAVVSACDWLAGGQQMVT 289 (481)
T ss_pred CcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccc-cCCceeeeeeeeeeccccceEehhhhcCcceeee
Confidence 99999998541111111111111111 00000 111111 1111124567889999999999999999999999
Q ss_pred EECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC--CCceEEEEecccCc
Q 000602 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGR 349 (1398)
Q Consensus 274 ~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~--~g~~l~~l~~h~~~ 349 (1398)
+|.|++..+||++++.. +. .+.||....+.++-++ +++++.+.|.+.|+||+ .-..+..|++|..
T Consensus 290 aSWDRTAnlwDVEtge~-----v~-----~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFReaI~sV~VFQGHtd- 358 (481)
T KOG0300|consen 290 ASWDRTANLWDVETGEV-----VN-----ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFREAIQSVAVFQGHTD- 358 (481)
T ss_pred eeccccceeeeeccCce-----ec-----cccCcchhccccccCCcceEEEEeccCceeEeccchhhcceeeeeccccc-
Confidence 99999999999999876 33 8889999998888774 78999999999999999 3456788999999
Q ss_pred cEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEec
Q 000602 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTS 429 (1398)
Q Consensus 350 ~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~ 429 (1398)
.|+++.|..+. .+++|+.|.+|++||++.. ...+..+. ...+++.++.+.
T Consensus 359 tVTS~vF~~dd-~vVSgSDDrTvKvWdLrNM----------------RsplATIR-------------tdS~~NRvavs~ 408 (481)
T KOG0300|consen 359 TVTSVVFNTDD-RVVSGSDDRTVKVWDLRNM----------------RSPLATIR-------------TDSPANRVAVSK 408 (481)
T ss_pred ceeEEEEecCC-ceeecCCCceEEEeeeccc----------------cCcceeee-------------cCCccceeEeec
Confidence 69999998654 6889999999999999531 11111222 123577778777
Q ss_pred CCeEEEEEcC-CcEEEEEeecCCCceeEEE----EeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcC
Q 000602 430 EDTLYIATNH-GYLYHTKLCDMDSVNWNKI----LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1398)
Q Consensus 430 dg~llv~t~~-g~i~~~~l~~~~~~~w~~i----~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~ 503 (1398)
.+.+++.-.+ .++. +++.+..+..++ .++| ..-+.|.++.... |- .-|++++-|..+.-|++..
T Consensus 409 g~~iIAiPhDNRqvR---lfDlnG~RlaRlPrtsRqgH-rRMV~c~AW~eeh-----p~-cnLftcGFDR~v~gW~in~ 477 (481)
T KOG0300|consen 409 GHPIIAIPHDNRQVR---LFDLNGNRLARLPRTSRQGH-RRMVTCCAWLEEH-----PA-CNLFTCGFDRMVAGWKINT 477 (481)
T ss_pred CCceEEeccCCceEE---EEecCCCccccCCccccccc-ceeeeeeeccccC-----cc-cccccccccceeeeeEecc
Confidence 7767766544 3444 444443332222 2333 4556676665543 22 3477888898999998864
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.5e-19 Score=188.83 Aligned_cols=275 Identities=17% Similarity=0.269 Sum_probs=198.6
Q ss_pred EEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEE
Q 000602 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1398)
Q Consensus 195 ~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~ 274 (1398)
.|++|+....|.-+++.-.. . ...+. ...+..++..+..|.++|++||. ++.++|||
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-----~----~~~~s------------~~~~l~~lF~~~aH~~sitavAV--s~~~~aSG 59 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-----K----GCTDS------------VKPTLKPLFAFSAHAGSITALAV--SGPYVASG 59 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-----c----ccccc------------cceeeeccccccccccceeEEEe--cceeEecc
Confidence 47788888888888776110 0 00000 00134557778899999999998 48999999
Q ss_pred ECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC----CEEEEEeCCCcEEEEcC-CCceEEEEecccCc
Q 000602 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD----SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1398)
Q Consensus 275 s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~----~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~ 349 (1398)
|.|-+|+|||+....+ . ..+..|.+.|+++.|.+ +.|++|++||.|.+|+. .-.++..+++|.++
T Consensus 60 ssDetI~IYDm~k~~q-----l-----g~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~ 129 (362)
T KOG0294|consen 60 SSDETIHIYDMRKRKQ-----L-----GILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQ 129 (362)
T ss_pred CCCCcEEEEeccchhh-----h-----cceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccc
Confidence 9999999999998766 2 37888999999999983 38999999999999999 77899999999995
Q ss_pred cEEEEEEcCCCCEEEEEEcCCcEEEEEc-CCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEe
Q 000602 350 GIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428 (1398)
Q Consensus 350 ~V~sl~~spdg~~latgg~Dg~I~iwdl-~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs 428 (1398)
|+.++++|.+++.++.|.|+.+++|++ +|+. -+...+. ...+.+.|+
T Consensus 130 -Vt~lsiHPS~KLALsVg~D~~lr~WNLV~Gr~------------------a~v~~L~-------------~~at~v~w~ 177 (362)
T KOG0294|consen 130 -VTDLSIHPSGKLALSVGGDQVLRTWNLVRGRV------------------AFVLNLK-------------NKATLVSWS 177 (362)
T ss_pred -cceeEecCCCceEEEEcCCceeeeehhhcCcc------------------ceeeccC-------------CcceeeEEc
Confidence 999999999999999999999999999 4321 1111111 123448899
Q ss_pred cCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCcccc
Q 000602 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTP 508 (1398)
Q Consensus 429 ~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~ 508 (1398)
|.|..++......+-.+.+-+..... .......+.|+-+ .++..|++|..++.|++||.++..+.
T Consensus 178 ~~Gd~F~v~~~~~i~i~q~d~A~v~~-----~i~~~~r~l~~~~---------l~~~~L~vG~d~~~i~~~D~ds~~~~- 242 (362)
T KOG0294|consen 178 PQGDHFVVSGRNKIDIYQLDNASVFR-----EIENPKRILCATF---------LDGSELLVGGDNEWISLKDTDSDTPL- 242 (362)
T ss_pred CCCCEEEEEeccEEEEEecccHhHhh-----hhhccccceeeee---------cCCceEEEecCCceEEEeccCCCccc-
Confidence 99986666666666655443322111 1122233444433 34678999999999999999874322
Q ss_pred ceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCC
Q 000602 509 QLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1398)
Q Consensus 509 ~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~ 555 (1398)
.....++.++-+++....|++.+|+|++.||.|++||++..
T Consensus 243 ------~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I~vWd~~~~ 283 (362)
T KOG0294|consen 243 ------TEFLAHENRVKDIASYTNPEHEYLVTASSDGFIKVWDIDME 283 (362)
T ss_pred ------eeeecchhheeeeEEEecCCceEEEEeccCceEEEEEcccc
Confidence 12223344555554455688899999999999999999864
|
|
| >KOG0641 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.8e-18 Score=173.69 Aligned_cols=286 Identities=15% Similarity=0.199 Sum_probs=218.3
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCC------C--------eEEEEEEeeeCccEEEEEEeccccccC
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEA------G--------TLIRPFQVFHGIRLHGISCNFINCTEG 81 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~d-g~I~Iwd~~t------g--------~~l~~~~~~~~~~V~~i~fs~~~~~~~ 81 (1398)
...|.+++|+ |. |.+.|+|++ .+++|--... + ..+.+-..|+...|.+.+|+
T Consensus 32 sqairav~fh--p~----g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws------- 98 (350)
T KOG0641|consen 32 SQAIRAVAFH--PA----GGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWS------- 98 (350)
T ss_pred hhheeeEEec--CC----CceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEec-------
Confidence 4568999999 98 899999995 7887764321 1 12222233555589999999
Q ss_pred CCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecC-CCcEEEEEEC-CCe
Q 000602 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN-GNRSLAIGCS-DNS 158 (1398)
Q Consensus 82 pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~-dg~~Latgs~-Dg~ 158 (1398)
|+| .+|++++ |++|++..++.+.... .-....+.-|.+.|.+++|...++ .+.+|++++. |..
T Consensus 99 ~~g----eliatgsndk~ik~l~fn~dt~~~----------~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~ 164 (350)
T KOG0641|consen 99 PCG----ELIATGSNDKTIKVLPFNADTCNA----------TGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCK 164 (350)
T ss_pred Ccc----CeEEecCCCceEEEEecccccccc----------cCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcce
Confidence 998 7888876 8999998876433111 111224557899999999986332 4567777654 677
Q ss_pred EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000602 159 IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1398)
Q Consensus 159 V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1398)
|.+=|..+|+....+.++.+.++.-. +.++..+++|+.|.+|++||++
T Consensus 165 iy~tdc~~g~~~~a~sghtghilaly-----swn~~m~~sgsqdktirfwdlr--------------------------- 212 (350)
T KOG0641|consen 165 IYITDCGRGQGFHALSGHTGHILALY-----SWNGAMFASGSQDKTIRFWDLR--------------------------- 212 (350)
T ss_pred EEEeecCCCCcceeecCCcccEEEEE-----EecCcEEEccCCCceEEEEeee---------------------------
Confidence 88888889999888888877654322 3468899999999999999998
Q ss_pred ecccccceeEEEEEe----C---ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccE
Q 000602 239 LQDQQHTAVNLFRLV----G---HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1398)
Q Consensus 239 i~~~~~~~~~~~~l~----g---H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V 311 (1398)
-...+.++. + .+..|.+|+..|.|++|++|-.|.+..+||++.++. ++ .+.+|...|
T Consensus 213 ------v~~~v~~l~~~~~~~glessavaav~vdpsgrll~sg~~dssc~lydirg~r~-----iq-----~f~phsadi 276 (350)
T KOG0641|consen 213 ------VNSCVNTLDNDFHDGGLESSAVAAVAVDPSGRLLASGHADSSCMLYDIRGGRM-----IQ-----RFHPHSADI 276 (350)
T ss_pred ------ccceeeeccCcccCCCcccceeEEEEECCCcceeeeccCCCceEEEEeeCCce-----ee-----eeCCCccce
Confidence 122222221 1 236799999999999999999999999999999887 44 888999999
Q ss_pred EEEEEcC--CEEEEEeCCCcEEEEcCCCce-----EEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 312 WDCCLTD--SFIITAGEDCTCRVWGSDGKQ-----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 312 ~~l~~s~--~~l~sgs~Dg~i~vWd~~g~~-----l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.|+.|+| .++++++.|..|++=|+.|.. +-....|..+ +-.+.|+|..--+++.+.|.++.+|-+.
T Consensus 277 r~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~ehkdk-~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 277 RCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEHKDK-AIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred eEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEeccCc-eEEEEecCccceeeeccCcceEEEeccC
Confidence 9999995 699999999999999996643 3345567775 6788999999889999999999999874
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.85 E-value=3.2e-19 Score=190.10 Aligned_cols=267 Identities=18% Similarity=0.188 Sum_probs=206.2
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
...|+.|.|+ |. ...|++++ ||++++||.....+...++ +. .++.+.+|. ++ ..+++++
T Consensus 13 ~d~IS~v~f~--~~----~~~LLvssWDgslrlYdv~~~~l~~~~~-~~-~plL~c~F~-------d~-----~~~~~G~ 72 (323)
T KOG1036|consen 13 EDGISSVKFS--PS----SSDLLVSSWDGSLRLYDVPANSLKLKFK-HG-APLLDCAFA-------DE-----STIVTGG 72 (323)
T ss_pred hhceeeEEEc--Cc----CCcEEEEeccCcEEEEeccchhhhhhee-cC-Cceeeeecc-------CC-----ceEEEec
Confidence 4569999999 87 66777777 9999999999887766666 33 489999998 55 3455555
Q ss_pred -CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 96 -EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 96 -d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
|+.|+.+|+.+.. ...+..|...|.|+.+++ ....+++|+.|++|++||.+.......+.
T Consensus 73 ~dg~vr~~Dln~~~----------------~~~igth~~~i~ci~~~~---~~~~vIsgsWD~~ik~wD~R~~~~~~~~d 133 (323)
T KOG1036|consen 73 LDGQVRRYDLNTGN----------------EDQIGTHDEGIRCIEYSY---EVGCVISGSWDKTIKFWDPRNKVVVGTFD 133 (323)
T ss_pred cCceEEEEEecCCc----------------ceeeccCCCceEEEEeec---cCCeEEEcccCccEEEEeccccccccccc
Confidence 9999999998743 224557999999999998 67788999999999999998765555554
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE-EEEe
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLV 253 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~-~~l~ 253 (1398)
.+. -+|++.. .+..|+.|+.+..+.+||++.-. .+. .+-.
T Consensus 134 ~~k--kVy~~~v-----~g~~LvVg~~~r~v~iyDLRn~~--------------------------------~~~q~reS 174 (323)
T KOG1036|consen 134 QGK--KVYCMDV-----SGNRLVVGTSDRKVLIYDLRNLD--------------------------------EPFQRRES 174 (323)
T ss_pred cCc--eEEEEec-----cCCEEEEeecCceEEEEEccccc--------------------------------chhhhccc
Confidence 444 5777754 57899999999999999998211 111 1112
Q ss_pred CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC---------ccEEEEEEcC--CEEE
Q 000602 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN---------ARVWDCCLTD--SFII 322 (1398)
Q Consensus 254 gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~---------~~V~~l~~s~--~~l~ 322 (1398)
.-+-.+.+|++.|++.-.+.+|-||.|.+=.+..... .+..+ ..+.-|. .+|.+++|++ +.|+
T Consensus 175 ~lkyqtR~v~~~pn~eGy~~sSieGRVavE~~d~s~~-----~~skk-yaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfa 248 (323)
T KOG1036|consen 175 SLKYQTRCVALVPNGEGYVVSSIEGRVAVEYFDDSEE-----AQSKK-YAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFA 248 (323)
T ss_pred cceeEEEEEEEecCCCceEEEeecceEEEEccCCchH-----Hhhhc-eeEEeeecccCCceEEEEeceeEeccccceEE
Confidence 3345688999999888899999999998877766522 11111 2444443 3789999996 7899
Q ss_pred EEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEc
Q 000602 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 323 sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~ 368 (1398)
||+.||.|.+||+ +.+.+..+..... .|.+++|+.+|..||+++.
T Consensus 249 TgGsDG~V~~Wd~~~rKrl~q~~~~~~-SI~slsfs~dG~~LAia~s 294 (323)
T KOG1036|consen 249 TGGSDGIVNIWDLFNRKRLKQLAKYET-SISSLSFSMDGSLLAIASS 294 (323)
T ss_pred ecCCCceEEEccCcchhhhhhccCCCC-ceEEEEeccCCCeEEEEec
Confidence 9999999999999 8888888887766 6999999999999999874
|
|
| >KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.85 E-value=4.2e-20 Score=212.64 Aligned_cols=242 Identities=19% Similarity=0.337 Sum_probs=190.1
Q ss_pred eEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC
Q 000602 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1398)
Q Consensus 89 ~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~ 167 (1398)
++|.++| |+.|++|++....... .......++.|.+||++++... +++.|++++.|-+|++|+...+
T Consensus 38 ryLfTgGRDg~i~~W~~~~d~~~~---------s~~~~asme~HsDWVNDiiL~~---~~~tlIS~SsDtTVK~W~~~~~ 105 (735)
T KOG0308|consen 38 RYLFTGGRDGIIRLWSVTQDSNEP---------STPYIASMEHHSDWVNDIILCG---NGKTLISASSDTTVKVWNAHKD 105 (735)
T ss_pred ceEEecCCCceEEEeccccccCCc---------ccchhhhhhhhHhHHhhHHhhc---CCCceEEecCCceEEEeecccC
Confidence 5555555 9999999997543110 1224678889999999999988 8989999999999999999776
Q ss_pred --eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000602 168 --SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1398)
Q Consensus 168 --~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1398)
-++.++..|.. .+.++++. .++..++|+|+-|+.|.+||+..+.-.-. .+ ..
T Consensus 106 ~~~c~stir~H~D-YVkcla~~--ak~~~lvaSgGLD~~IflWDin~~~~~l~------~s-----------------~n 159 (735)
T KOG0308|consen 106 NTFCMSTIRTHKD-YVKCLAYI--AKNNELVASGGLDRKIFLWDINTGTATLV------AS-----------------FN 159 (735)
T ss_pred cchhHhhhhcccc-hheeeeec--ccCceeEEecCCCccEEEEEccCcchhhh------hh-----------------cc
Confidence 34444444432 23333331 35678999999999999999984311000 00 01
Q ss_pred eeEEEEEe-CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEE
Q 000602 246 AVNLFRLV-GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1398)
Q Consensus 246 ~~~~~~l~-gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~ 322 (1398)
......+. |+...|++++.++.|..+++|+..+.+|+||.++.+. + ..+.||+..|.++..+ |..++
T Consensus 160 ~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt~~k-----i-----mkLrGHTdNVr~ll~~dDGt~~l 229 (735)
T KOG0308|consen 160 NVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRTCKK-----I-----MKLRGHTDNVRVLLVNDDGTRLL 229 (735)
T ss_pred ccccccCCCCCccceeeeecCCcceEEEecCcccceEEeccccccc-----e-----eeeeccccceEEEEEcCCCCeEe
Confidence 11222233 8999999999999999999999999999999999766 2 3778999999999997 68999
Q ss_pred EEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 323 sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
+++.||+|++||+ ..+++.++..|.. +||++..+|+-..+++|+.||.|..=|+..
T Consensus 230 s~sSDgtIrlWdLgqQrCl~T~~vH~e-~VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n 286 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRCLATYIVHKE-GVWALQSSPSFTHVYSGGRDGNIYRTDLRN 286 (735)
T ss_pred ecCCCceEEeeeccccceeeeEEeccC-ceEEEeeCCCcceEEecCCCCcEEecccCC
Confidence 9999999999999 7889999999998 699999999999999999999999988853
|
|
| >KOG0294 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.5e-19 Score=190.70 Aligned_cols=235 Identities=15% Similarity=0.245 Sum_probs=186.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|++||++ ++|+|+|+ |-+|+|||+.+...+..+..|.+ .|+++.|. ++-. ...+|.++
T Consensus 42 H~~sitavAVs--------~~~~aSGssDetI~IYDm~k~~qlg~ll~Hag-sitaL~F~-------~~~S-~shLlS~s 104 (362)
T KOG0294|consen 42 HAGSITALAVS--------GPYVASGSSDETIHIYDMRKRKQLGILLSHAG-SITALKFY-------PPLS-KSHLLSGS 104 (362)
T ss_pred cccceeEEEec--------ceeEeccCCCCcEEEEeccchhhhcceecccc-ceEEEEec-------CCcc-hhheeeec
Confidence 89999999999 78999999 89999999999999999988876 89999999 4320 01567777
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.||.|.+|+... +.++..+++|.+.|+.++++| .+++-++.+.|+.++.||+-+|+.-..+.
T Consensus 105 dDG~i~iw~~~~---------------W~~~~slK~H~~~Vt~lsiHP---S~KLALsVg~D~~lr~WNLV~Gr~a~v~~ 166 (362)
T KOG0294|consen 105 DDGHIIIWRVGS---------------WELLKSLKAHKGQVTDLSIHP---SGKLALSVGGDQVLRTWNLVRGRVAFVLN 166 (362)
T ss_pred CCCcEEEEEcCC---------------eEEeeeecccccccceeEecC---CCceEEEEcCCceeeeehhhcCccceeec
Confidence 799999999975 889999999999999999999 99998899999999999999887654443
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1398)
-... ...+.| ++.|.+++.+..+ .|-+|.+.. ...+..+.
T Consensus 167 L~~~--at~v~w---~~~Gd~F~v~~~~-~i~i~q~d~---------------------------------A~v~~~i~- 206 (362)
T KOG0294|consen 167 LKNK--ATLVSW---SPQGDHFVVSGRN-KIDIYQLDN---------------------------------ASVFREIE- 206 (362)
T ss_pred cCCc--ceeeEE---cCCCCEEEEEecc-EEEEEeccc---------------------------------HhHhhhhh-
Confidence 2222 223555 6788888877654 588888772 11111111
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc----CCEEEEEeCCCcE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTC 330 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s----~~~l~sgs~Dg~i 330 (1398)
....+.++.|. ++..|++|.+|+.|++||-.+... . ..+.+|..+|-++.+- +.+|+|++.||.|
T Consensus 207 ~~~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds~~~-----~-----~~~~AH~~RVK~i~~~~~~~~~~lvTaSSDG~I 275 (362)
T KOG0294|consen 207 NPKRILCATFL-DGSELLVGGDNEWISLKDTDSDTP-----L-----TEFLAHENRVKDIASYTNPEHEYLVTASSDGFI 275 (362)
T ss_pred ccccceeeeec-CCceEEEecCCceEEEeccCCCcc-----c-----eeeecchhheeeeEEEecCCceEEEEeccCceE
Confidence 12445666664 567899999999999999987554 2 3788999999999965 2599999999999
Q ss_pred EEEcCC
Q 000602 331 RVWGSD 336 (1398)
Q Consensus 331 ~vWd~~ 336 (1398)
+|||++
T Consensus 276 ~vWd~~ 281 (362)
T KOG0294|consen 276 KVWDID 281 (362)
T ss_pred EEEEcc
Confidence 999994
|
|
| >KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-18 Score=184.95 Aligned_cols=291 Identities=14% Similarity=0.176 Sum_probs=210.1
Q ss_pred EEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEe
Q 000602 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG 325 (1398)
Q Consensus 248 ~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs 325 (1398)
+.+.+..-.+.|.++.|+++|..|++++.|.+++|||..++++ .+ .+..+...+..++|. +..++.++
T Consensus 6 ~ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~-----~~-----ti~skkyG~~~~~Fth~~~~~i~sS 75 (311)
T KOG1446|consen 6 PAKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQ-----VK-----TINSKKYGVDLACFTHHSNTVIHSS 75 (311)
T ss_pred cccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCce-----ee-----EeecccccccEEEEecCCceEEEcc
Confidence 3444555678999999999999999999999999999999877 33 555666667777775 56666666
Q ss_pred C--CCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEE
Q 000602 326 E--DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1398)
Q Consensus 326 ~--Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~ 402 (1398)
. |.+||.-++ +.+.++.|.||.. .|.++..+|-+..+++++.|++||+||++...-+.+
T Consensus 76 tk~d~tIryLsl~dNkylRYF~GH~~-~V~sL~~sP~~d~FlS~S~D~tvrLWDlR~~~cqg~----------------- 137 (311)
T KOG1446|consen 76 TKEDDTIRYLSLHDNKYLRYFPGHKK-RVNSLSVSPKDDTFLSSSLDKTVRLWDLRVKKCQGL----------------- 137 (311)
T ss_pred CCCCCceEEEEeecCceEEEcCCCCc-eEEEEEecCCCCeEEecccCCeEEeeEecCCCCceE-----------------
Confidence 5 899999999 8999999999999 599999999999999999999999999963211100
Q ss_pred eeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC-cEEEEEeecCCCceeEEEEee-cCCccEEEEeccCCCCCCc
Q 000602 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG-YLYHTKLCDMDSVNWNKILQV-SEGMPIICMDLLSNEPKYP 480 (1398)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g-~i~~~~l~~~~~~~w~~i~~~-~~~~~i~~l~~~~~~~~~s 480 (1398)
+. ...-...||.|+|-++|.+..+ .|.++++.....+.+....-. ....+...+.+
T Consensus 138 ------------l~--~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~F-------- 195 (311)
T KOG1446|consen 138 ------------LN--LSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEF-------- 195 (311)
T ss_pred ------------Ee--cCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEE--------
Confidence 00 0112467899999888887766 666555544433333222222 22344445555
Q ss_pred CCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccc
Q 000602 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (1398)
Q Consensus 481 ~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~ 560 (1398)
+++++.+++++..+.+++.|.-+|..+. ++...+....+..-.+|+||++++++|+.||+|.+|+++.+..
T Consensus 196 S~dGK~iLlsT~~s~~~~lDAf~G~~~~------tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~--- 266 (311)
T KOG1446|consen 196 SPDGKSILLSTNASFIYLLDAFDGTVKS------TFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKK--- 266 (311)
T ss_pred cCCCCEEEEEeCCCcEEEEEccCCcEee------eEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcE---
Confidence 4789999999999999999998887442 2222222222223468999999999999999999999976532
Q ss_pred cccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECC
Q 000602 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1398)
Q Consensus 561 ~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~ 610 (1398)
...+...+...+.|+.|+|.-.++|+++. .+.+|-..
T Consensus 267 -----------v~~~~~~~~~~~~~~~fnP~~~mf~sa~s--~l~fw~p~ 303 (311)
T KOG1446|consen 267 -----------VAVLRGPNGGPVSCVRFNPRYAMFVSASS--NLVFWLPD 303 (311)
T ss_pred -----------eeEecCCCCCCccccccCCceeeeeecCc--eEEEEecc
Confidence 12222236788999999998777776654 56666443
|
|
| >KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.84 E-value=3e-19 Score=209.19 Aligned_cols=267 Identities=17% Similarity=0.245 Sum_probs=213.9
Q ss_pred eEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1398)
Q Consensus 89 ~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~ 168 (1398)
..||++-+..|.+|+-.... ...+..+ +.+.|+++.|++ +|.+||+|..+|.|.|||..+.+
T Consensus 189 n~laValg~~vylW~~~s~~-------------v~~l~~~--~~~~vtSv~ws~---~G~~LavG~~~g~v~iwD~~~~k 250 (484)
T KOG0305|consen 189 NVLAVALGQSVYLWSASSGS-------------VTELCSF--GEELVTSVKWSP---DGSHLAVGTSDGTVQIWDVKEQK 250 (484)
T ss_pred CeEEEEecceEEEEecCCCc-------------eEEeEec--CCCceEEEEECC---CCCEEEEeecCCeEEEEehhhcc
Confidence 58888888999999988633 2233333 378999999999 99999999999999999999988
Q ss_pred EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
.+..+..++...+-++++ +...+.+|+.++.|..+|++. ....
T Consensus 251 ~~~~~~~~h~~rvg~laW-----~~~~lssGsr~~~I~~~dvR~--------------------------------~~~~ 293 (484)
T KOG0305|consen 251 KTRTLRGSHASRVGSLAW-----NSSVLSSGSRDGKILNHDVRI--------------------------------SQHV 293 (484)
T ss_pred ccccccCCcCceeEEEec-----cCceEEEecCCCcEEEEEEec--------------------------------chhh
Confidence 888888755556667765 477899999999999999982 1112
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEe
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG 325 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs 325 (1398)
...+.+|...|..++|++|+.+||||+.|+.+.|||...... . ..+..|.+.|..++|+| ++||+|+
T Consensus 294 ~~~~~~H~qeVCgLkws~d~~~lASGgnDN~~~Iwd~~~~~p-----~-----~~~~~H~aAVKA~awcP~q~~lLAsGG 363 (484)
T KOG0305|consen 294 VSTLQGHRQEVCGLKWSPDGNQLASGGNDNVVFIWDGLSPEP-----K-----FTFTEHTAAVKALAWCPWQSGLLATGG 363 (484)
T ss_pred hhhhhcccceeeeeEECCCCCeeccCCCccceEeccCCCccc-----c-----EEEeccceeeeEeeeCCCccCceEEcC
Confidence 224889999999999999999999999999999999955443 2 38889999999999994 8899885
Q ss_pred --CCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEE--EcCCcEEEEEcCCCCcccccCCCccccccCCccE
Q 000602 326 --EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEI 400 (1398)
Q Consensus 326 --~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latg--g~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~ 400 (1398)
.|+.|++||. +|+.+..+.... .|.+|.|++..+-|+++ -.++.|.||+....
T Consensus 364 Gs~D~~i~fwn~~~g~~i~~vdtgs--QVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~-------------------- 421 (484)
T KOG0305|consen 364 GSADRCIKFWNTNTGARIDSVDTGS--QVCSLIWSKKYKELLSTHGYSENQITLWKYPSM-------------------- 421 (484)
T ss_pred CCcccEEEEEEcCCCcEecccccCC--ceeeEEEcCCCCEEEEecCCCCCcEEEEecccc--------------------
Confidence 7899999999 888888776554 49999999998755553 34778999998421
Q ss_pred EEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EEcCCcEEEEEeecCC
Q 000602 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMD 451 (1398)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t~~g~i~~~~l~~~~ 451 (1398)
+.+..+.+|...|-.++++|||..++ ++.+..+.+|++++..
T Consensus 422 ---------~~~~~l~gH~~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 422 ---------KLVAELLGHTSRVLYLALSPDGETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred ---------ceeeeecCCcceeEEEEECCCCCEEEEecccCcEEeccccCCC
Confidence 11233456778899999999986655 4678889888887753
|
|
| >PTZ00420 coronin; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.1e-18 Score=213.30 Aligned_cols=244 Identities=13% Similarity=0.093 Sum_probs=176.9
Q ss_pred CCCcEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--------EEEEEEeeeC
Q 000602 2 GKKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--------LIRPFQVFHG 65 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~--------~l~~~~~~~~ 65 (1398)
.++++++|++.+.. |.++|++++|+ |+ .+.+||+|+ |++|+|||+.++. .+..+.+|..
T Consensus 52 ~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafs--P~---~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~p~~~L~gH~~ 126 (568)
T PTZ00420 52 LIGAIRLENQMRKPPVIKLKGHTSSILDLQFN--PC---FSEILASGSEDLTIRVWEIPHNDESVKEIKDPQCILKGHKK 126 (568)
T ss_pred ceeEEEeeecCCCceEEEEcCCCCCEEEEEEc--CC---CCCEEEEEeCCCeEEEEECCCCCccccccccceEEeecCCC
Confidence 35678999876543 88999999999 85 257888888 8999999997642 2345666665
Q ss_pred ccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 66 ~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
.|.+++|+ |++. .++++++ |++|+|||+... +....+. |...|.+++|+|
T Consensus 127 -~V~sVaf~-------P~g~---~iLaSgS~DgtIrIWDl~tg---------------~~~~~i~-~~~~V~Slswsp-- 177 (568)
T PTZ00420 127 -KISIIDWN-------PMNY---YIMCSSGFDSFVNIWDIENE---------------KRAFQIN-MPKKLSSLKWNI-- 177 (568)
T ss_pred -cEEEEEEC-------CCCC---eEEEEEeCCCeEEEEECCCC---------------cEEEEEe-cCCcEEEEEECC--
Confidence 79999999 8762 4555554 999999999862 2333443 567899999999
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEE-EEEeecCCCCCcEEEEEECCC----eEEEEEcccCCccccC
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY-SMKLWGDNLEALRIASGTIYN----EIIVWKVDWEHVAPLL 219 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~-s~~~~~~s~d~~~lasgs~dg----~I~vWd~~~~~~~~~~ 219 (1398)
+|.+|++++.|+.|+|||+++++.+.++.+|...... .+....+++++.+|++++.++ +|++||++.
T Consensus 178 -dG~lLat~s~D~~IrIwD~Rsg~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~------- 249 (568)
T PTZ00420 178 -KGNLLSGTCVGKHMHIIDPRKQEIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKN------- 249 (568)
T ss_pred -CCCEEEEEecCCEEEEEECCCCcEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCC-------
Confidence 9999999999999999999999998888877653211 111112257788899888774 799999981
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeEEEE--EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCce
Q 000602 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR--LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~--l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
...++.. +..+.+.+......+++.++++|+.|++||+|++..+.. .
T Consensus 250 -------------------------~~~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~------~ 298 (568)
T PTZ00420 250 -------------------------TTSALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSI------R 298 (568)
T ss_pred -------------------------CCCceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcE------E
Confidence 1233333 334445555555566789999999999999999987543 2
Q ss_pred EeeeeEEecCCccEEEEEEcCCEE
Q 000602 298 EVGSSVLYGHNARVWDCCLTDSFI 321 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s~~~l 321 (1398)
.+ ....+..++.+++|.|+..
T Consensus 299 ~l---~~~~s~~p~~g~~f~Pkr~ 319 (568)
T PTZ00420 299 KV---NEYKSCSPFRSFGFLPKQI 319 (568)
T ss_pred ee---cccccCCCccceEEccccc
Confidence 22 2233667778888887543
|
|
| >KOG0289 consensus mRNA splicing factor [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.84 E-value=4.1e-19 Score=195.91 Aligned_cols=280 Identities=13% Similarity=0.188 Sum_probs=216.6
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
.|.++...| ....++||+.|.++.++|...++.+..++++...+ .++.+ .++...+++++.|-.|+||...
T Consensus 221 gi~ald~~~---s~~~ilTGG~d~~av~~d~~s~q~l~~~~Gh~kki-~~v~~---~~~~~~v~~aSad~~i~vws~~-- 291 (506)
T KOG0289|consen 221 GITALDIIP---SSSKILTGGEDKTAVLFDKPSNQILATLKGHTKKI-TSVKF---HKDLDTVITASADEIIRVWSVP-- 291 (506)
T ss_pred CeeEEeecC---CCCcceecCCCCceEEEecchhhhhhhccCcceEE-EEEEe---ccchhheeecCCcceEEeeccc--
Confidence 577888887 66789999999999999999999999999887654 44555 6778899999999999999987
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCC
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~ 293 (1398)
..........|+++|+.+..+|.|.||++++.|++.-+.|++++.+
T Consensus 292 -------------------------------~~s~~~~~~~h~~~V~~ls~h~tgeYllsAs~d~~w~Fsd~~~g~~--- 337 (506)
T KOG0289|consen 292 -------------------------------LSSEPTSSRPHEEPVTGLSLHPTGEYLLSASNDGTWAFSDISSGSQ--- 337 (506)
T ss_pred -------------------------------cccCccccccccccceeeeeccCCcEEEEecCCceEEEEEccCCcE---
Confidence 2334455678999999999999999999999999999999999876
Q ss_pred CCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCC
Q 000602 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDS 370 (1398)
Q Consensus 294 ~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg 370 (1398)
+..+ .-.+..-.+++++|+ +..|.+|..|+.++|||+ ++..+..|.+|.+ +|..++|+.+|-|||++..|+
T Consensus 338 --lt~v---s~~~s~v~~ts~~fHpDgLifgtgt~d~~vkiwdlks~~~~a~Fpght~-~vk~i~FsENGY~Lat~add~ 411 (506)
T KOG0289|consen 338 --LTVV---SDETSDVEYTSAAFHPDGLIFGTGTPDGVVKIWDLKSQTNVAKFPGHTG-PVKAISFSENGYWLATAADDG 411 (506)
T ss_pred --EEEE---eeccccceeEEeeEcCCceEEeccCCCceEEEEEcCCccccccCCCCCC-ceeEEEeccCceEEEEEecCC
Confidence 2211 111223457999998 468889999999999999 7788999999999 699999999999999999999
Q ss_pred cEEEEEcCC-CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeec
Q 000602 371 AIKVHQFQA-FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1398)
Q Consensus 371 ~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~ 449 (1398)
.|++||++. ...+++. .+ ....+.++.|...|.+++.. |.-..+..+.
T Consensus 412 ~V~lwDLRKl~n~kt~~------------------l~-----------~~~~v~s~~fD~SGt~L~~~--g~~l~Vy~~~ 460 (506)
T KOG0289|consen 412 SVKLWDLRKLKNFKTIQ------------------LD-----------EKKEVNSLSFDQSGTYLGIA--GSDLQVYICK 460 (506)
T ss_pred eEEEEEehhhcccceee------------------cc-----------ccccceeEEEcCCCCeEEee--cceeEEEEEe
Confidence 999999953 2222221 11 11258899999999888776 2222333556
Q ss_pred CCCceeEEEEeecCCc-cEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEE
Q 000602 450 MDSVNWNKILQVSEGM-PIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRV 501 (1398)
Q Consensus 450 ~~~~~w~~i~~~~~~~-~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~ 501 (1398)
.....|..+.+.+... ...++.+ .....++++++.|..++++.+
T Consensus 461 k~~k~W~~~~~~~~~sg~st~v~F--------g~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 461 KKTKSWTEIKELADHSGLSTGVRF--------GEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccccceeeehhhhcccccceeee--------cccceEEeeccchhheEEeec
Confidence 6667798887665432 3344444 234678999999988888754
|
|
| >KOG1407 consensus WD40 repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.84 E-value=7.1e-19 Score=182.70 Aligned_cols=274 Identities=13% Similarity=0.143 Sum_probs=214.3
Q ss_pred EEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEE
Q 000602 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 137 (1398)
.++.|.. +|++|+|+ -+| ..+++++ |+++++|+++... +.......+|.+.|-.
T Consensus 15 ~~~~~~~-~v~Sv~wn-------~~g----~~lasgs~dktv~v~n~e~~r-------------~~~~~~~~gh~~svdq 69 (313)
T KOG1407|consen 15 ELQGHVQ-KVHSVAWN-------CDG----TKLASGSFDKTVSVWNLERDR-------------FRKELVYRGHTDSVDQ 69 (313)
T ss_pred Hhhhhhh-cceEEEEc-------ccC----ceeeecccCCceEEEEecchh-------------hhhhhcccCCCcchhh
Confidence 4455555 79999999 888 6777766 9999999998532 3344467799999999
Q ss_pred EEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccc
Q 000602 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~ 217 (1398)
++|.| .....+++++.|.+|++||++.+++...+......+. +.+ +|++.++++++.|..|...|.+
T Consensus 70 l~w~~--~~~d~~atas~dk~ir~wd~r~~k~~~~i~~~~eni~--i~w---sp~g~~~~~~~kdD~it~id~r------ 136 (313)
T KOG1407|consen 70 LCWDP--KHPDLFATASGDKTIRIWDIRSGKCTARIETKGENIN--ITW---SPDGEYIAVGNKDDRITFIDAR------ 136 (313)
T ss_pred heeCC--CCCcceEEecCCceEEEEEeccCcEEEEeeccCcceE--EEE---cCCCCEEEEecCcccEEEEEec------
Confidence 99998 4667899999999999999999999888775544332 223 7899999999999999999998
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCce
Q 000602 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
+.+..... ...-.+..++|+.++.++.-....|.|.|-....-+.
T Consensus 137 ---------------------------~~~~~~~~-~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsypsLkp------- 181 (313)
T KOG1407|consen 137 ---------------------------TYKIVNEE-QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYPSLKP------- 181 (313)
T ss_pred ---------------------------ccceeehh-cccceeeeeeecCCCCEEEEecCCceEEEEecccccc-------
Confidence 23332222 2344577888998888877777789999988876443
Q ss_pred EeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEE
Q 000602 298 EVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~i 374 (1398)
+ ..+..|.....|+.|+ |++|++|+.|..+.+||+ +--+++.+..+.- +|..+.|+.+|++||+|+.|-.|-|
T Consensus 182 -v--~si~AH~snCicI~f~p~GryfA~GsADAlvSLWD~~ELiC~R~isRldw-pVRTlSFS~dg~~lASaSEDh~IDI 257 (313)
T KOG1407|consen 182 -V--QSIKAHPSNCICIEFDPDGRYFATGSADALVSLWDVDELICERCISRLDW-PVRTLSFSHDGRMLASASEDHFIDI 257 (313)
T ss_pred -c--cccccCCcceEEEEECCCCceEeeccccceeeccChhHhhhheeeccccC-ceEEEEeccCcceeeccCccceEEe
Confidence 2 3888999999999998 699999999999999999 7778888888877 7999999999999999999988877
Q ss_pred EEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcC
Q 000602 375 HQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1398)
Q Consensus 375 wdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~ 439 (1398)
=+++ .+.+++.+. +.++...++|+|...+|+.+.+
T Consensus 258 A~ve-----------------tGd~~~eI~-------------~~~~t~tVAWHPk~~LLAyA~d 292 (313)
T KOG1407|consen 258 AEVE-----------------TGDRVWEIP-------------CEGPTFTVAWHPKRPLLAYACD 292 (313)
T ss_pred Eecc-----------------cCCeEEEee-------------ccCCceeEEecCCCceeeEEec
Confidence 6663 122233322 3356788999999888876643
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.83 E-value=7.4e-20 Score=188.17 Aligned_cols=248 Identities=21% Similarity=0.292 Sum_probs=189.2
Q ss_pred cEEEEEEeccccccCCCCccceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecC
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 145 (1398)
.||.+... --| ..||+ ++|++|+|+.++... ..+++.+|.||.++|+.++|.. ..
T Consensus 13 ~IHda~lD-------yyg----krlATcsSD~tVkIf~v~~n~------------~s~ll~~L~Gh~GPVwqv~wah-Pk 68 (299)
T KOG1332|consen 13 MIHDAQLD-------YYG----KRLATCSSDGTVKIFEVRNNG------------QSKLLAELTGHSGPVWKVAWAH-PK 68 (299)
T ss_pred hhhHhhhh-------hhc----ceeeeecCCccEEEEEEcCCC------------CceeeeEecCCCCCeeEEeecc-cc
Confidence 67776655 334 34555 559999999998644 2578999999999999999964 24
Q ss_pred CCcEEEEEECCCeEEEEEcCCCeEEEEEc-cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCC
Q 000602 146 GNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~~~~~~~l~-~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
-|.+||+++.||.|.||.-++++-.+... ..+...+.++++.+ ..-|..|+.++.||.|.|.+++..
T Consensus 69 ~G~iLAScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wap-heygl~LacasSDG~vsvl~~~~~----------- 136 (299)
T KOG1332|consen 69 FGTILASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAP-HEYGLLLACASSDGKVSVLTYDSS----------- 136 (299)
T ss_pred cCcEeeEeecCceEEEEecCCCchhhhhhhhhhcccceeecccc-cccceEEEEeeCCCcEEEEEEcCC-----------
Confidence 68999999999999999998885432221 23344567777644 346889999999999999998821
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC---C-----------CEEEEEECCCeEEEEEcCCCcc
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC---G-----------SKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd---g-----------~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
.....-.....|.-.|++++|.|- | +.|+||+-|..|+||+...++-
T Consensus 137 -------------------g~w~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w 197 (299)
T KOG1332|consen 137 -------------------GGWTTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSW 197 (299)
T ss_pred -------------------CCccchhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcch
Confidence 011122335679999999999985 4 5799999999999999988633
Q ss_pred cCCCCceEeeeeEEecCCccEEEEEEcC------CEEEEEeCCCcEEEEcCCC---ce-EEEEecccCccEEEEEEcCCC
Q 000602 291 KDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG---KQ-LKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 291 ~~~~~~~~i~~~~~~gh~~~V~~l~~s~------~~l~sgs~Dg~i~vWd~~g---~~-l~~l~~h~~~~V~sl~~spdg 360 (1398)
. .+ .++.+|...|.+++|.| ..|+++++||++.||..+. .. ...++.... .++++.|+..|
T Consensus 198 ~----~e----~~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~-~~w~vSWS~sG 268 (299)
T KOG1332|consen 198 K----LE----RTLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPD-VVWRVSWSLSG 268 (299)
T ss_pred h----hh----hhhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCc-ceEEEEEeccc
Confidence 1 11 36899999999999984 5899999999999998731 11 222333344 69999999999
Q ss_pred CEEEEEEcCCcEEEEEcC
Q 000602 361 SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl~ 378 (1398)
+.|+.++.|+.|.+|.-+
T Consensus 269 n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 269 NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred cEEEEecCCcEEEEEEeC
Confidence 999999999999999873
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.83 E-value=9.3e-20 Score=203.03 Aligned_cols=279 Identities=13% Similarity=0.224 Sum_probs=222.9
Q ss_pred eeccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC---eEEEEEEee-eCccEEEEEEeccccccCCCCccceeE
Q 000602 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 15 ~h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg---~~l~~~~~~-~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
.|..-|.++++| .. .+.+.+|+-|.|+|||+... ..+..+... .++.|..+... ||| +.
T Consensus 417 ~HGEvVcAvtIS--~~----trhVyTgGkgcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~-------pdg----rt 479 (705)
T KOG0639|consen 417 AHGEVVCAVTIS--NP----TRHVYTGGKGCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLL-------PDG----RT 479 (705)
T ss_pred ccCcEEEEEEec--CC----cceeEecCCCeEEEeeccCCCCCCccccccccCcccceeeeEec-------CCC----ce
Confidence 377778999999 54 79999999999999999642 344455443 35678888888 998 67
Q ss_pred EEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 91 la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
|+++| ..++.|||+..+. ......+....-...+++.+| |.+...++..||.|.|||+.+...
T Consensus 480 LivGGeastlsiWDLAapT-------------prikaeltssapaCyALa~sp---DakvcFsccsdGnI~vwDLhnq~~ 543 (705)
T KOG0639|consen 480 LIVGGEASTLSIWDLAAPT-------------PRIKAELTSSAPACYALAISP---DAKVCFSCCSDGNIAVWDLHNQTL 543 (705)
T ss_pred EEeccccceeeeeeccCCC-------------cchhhhcCCcchhhhhhhcCC---ccceeeeeccCCcEEEEEccccee
Confidence 77776 6899999998644 222223333334577899999 999999999999999999999999
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
+++++++... +.++.+ ++||..|-+|+-|++|+.||++ ++..+
T Consensus 544 VrqfqGhtDG-ascIdi---s~dGtklWTGGlDntvRcWDlr---------------------------------egrql 586 (705)
T KOG0639|consen 544 VRQFQGHTDG-ASCIDI---SKDGTKLWTGGLDNTVRCWDLR---------------------------------EGRQL 586 (705)
T ss_pred eecccCCCCC-ceeEEe---cCCCceeecCCCccceeehhhh---------------------------------hhhhh
Confidence 9999987654 345555 7899999999999999999998 23222
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED 327 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D 327 (1398)
... .....|+++.++|.+.+|+.|-..+.+.+-....... ..+.-|...|.++.|. ++++++.+.|
T Consensus 587 qqh-dF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~k-----------yqlhlheScVLSlKFa~cGkwfvStGkD 654 (705)
T KOG0639|consen 587 QQH-DFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKD 654 (705)
T ss_pred hhh-hhhhhheecccCCCccceeeecccCcEEEEecCCccc-----------eeecccccEEEEEEecccCceeeecCch
Confidence 211 2357899999999999999999999988877665443 4677899999999997 8999999999
Q ss_pred CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 328 g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
..+-.|.. -|..+...+... +|.++.++.|.++|+||+.|....+|.+
T Consensus 655 nlLnawrtPyGasiFqskE~S--sVlsCDIS~ddkyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 655 NLLNAWRTPYGASIFQSKESS--SVLSCDISFDDKYIVTGSGDKKATVYEV 703 (705)
T ss_pred hhhhhccCccccceeeccccC--cceeeeeccCceEEEecCCCcceEEEEE
Confidence 99999998 777776665544 5999999999999999999999888875
|
|
| >KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=8.5e-19 Score=195.38 Aligned_cols=257 Identities=17% Similarity=0.271 Sum_probs=199.1
Q ss_pred eeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE-EEEcc----------------CCcceEEEEEee
Q 000602 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHS----------------PERCLLYSMKLW 187 (1398)
Q Consensus 125 ~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~-~~l~~----------------~~~~~~~s~~~~ 187 (1398)
...+..|.-.|.+++++| +..++.+++.+++|.-|++.+++.. ..++. .+...+.++++
T Consensus 135 ~~~~~~H~~s~~~vals~---d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~av- 210 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVALSP---DDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAV- 210 (479)
T ss_pred ceeeccccCcceEEEeec---cccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEE-
Confidence 456678999999999999 9999999999999999999888743 11110 12234556666
Q ss_pred cCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC
Q 000602 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1398)
Q Consensus 188 ~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd 267 (1398)
++|+.+||+|+.|..|.||+.+ +..+++.+.+|.+.|.+++|-..
T Consensus 211 --S~Dgkylatgg~d~~v~Iw~~~---------------------------------t~ehv~~~~ghr~~V~~L~fr~g 255 (479)
T KOG0299|consen 211 --SSDGKYLATGGRDRHVQIWDCD---------------------------------TLEHVKVFKGHRGAVSSLAFRKG 255 (479)
T ss_pred --cCCCcEEEecCCCceEEEecCc---------------------------------ccchhhcccccccceeeeeeecC
Confidence 8899999999999999999999 67788889999999999999988
Q ss_pred CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEec
Q 000602 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKE 345 (1398)
Q Consensus 268 g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~~ 345 (1398)
...|++++.|++|++|++..... ++ +++||+..|.++... +..+-.|+.|+++++|++.....-.+.+
T Consensus 256 t~~lys~s~Drsvkvw~~~~~s~-----ve-----tlyGHqd~v~~IdaL~reR~vtVGgrDrT~rlwKi~eesqlifrg 325 (479)
T KOG0299|consen 256 TSELYSASADRSVKVWSIDQLSY-----VE-----TLYGHQDGVLGIDALSRERCVTVGGRDRTVRLWKIPEESQLIFRG 325 (479)
T ss_pred ccceeeeecCCceEEEehhHhHH-----HH-----HHhCCccceeeechhcccceEEeccccceeEEEeccccceeeeeC
Confidence 88999999999999999988765 33 899999999998776 3555555699999999996666667888
Q ss_pred ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccce-eeccCCCCcEEE
Q 000602 346 HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI-RLTDSKSEYVRC 424 (1398)
Q Consensus 346 h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~V~~ 424 (1398)
+.+ .+-|++|-.+ ..+++|+.||.|.+|++..+ ..+|+...+...... ... .+..+|++
T Consensus 326 ~~~-sidcv~~In~-~HfvsGSdnG~IaLWs~~KK-----------------kplf~~~~AHgv~~~~~~~-~~~~Wits 385 (479)
T KOG0299|consen 326 GEG-SIDCVAFIND-EHFVSGSDNGSIALWSLLKK-----------------KPLFTSRLAHGVIPELDPV-NGNFWITS 385 (479)
T ss_pred CCC-CeeeEEEecc-cceeeccCCceEEEeeeccc-----------------CceeEeeccccccCCcccc-ccccceee
Confidence 887 6999999754 46889999999999999421 122332222211111 111 12258999
Q ss_pred EEEecCCeEEEEEc-CCcEEEEEeecC
Q 000602 425 LHLTSEDTLYIATN-HGYLYHTKLCDM 450 (1398)
Q Consensus 425 lafs~dg~llv~t~-~g~i~~~~l~~~ 450 (1398)
++..|...++++++ +|.+.+|.+.+.
T Consensus 386 la~i~~sdL~asGS~~G~vrLW~i~~g 412 (479)
T KOG0299|consen 386 LAVIPGSDLLASGSWSGCVRLWKIEDG 412 (479)
T ss_pred eEecccCceEEecCCCCceEEEEecCC
Confidence 99999888888765 888887766543
|
|
| >KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=4.1e-19 Score=187.67 Aligned_cols=294 Identities=16% Similarity=0.234 Sum_probs=214.7
Q ss_pred EEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCC---CCCCCCcccccceeeeecccCCCc
Q 000602 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSP---NSQYQPETCVNLSLVQSLPRLSHW 134 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~---~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1398)
.+..|+. ++.+-+|+ ||| .++|+++ |.+|+|+|++..-.+ .+....+...+-..++++-.|.+.
T Consensus 107 ylt~HK~-~cR~aafs-------~DG----~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~de 174 (430)
T KOG0640|consen 107 YLTSHKS-PCRAAAFS-------PDG----SLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDE 174 (430)
T ss_pred EEeeccc-ceeeeeeC-------CCC----cEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCc
Confidence 3445555 79999999 998 7888877 999999999832111 111111111123578899999999
Q ss_pred EEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc-CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~-~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
|+++.|+| ....|++|+.|++|+++|+......+.++. .+...+.++.| .|.|.+|+.|+.-..+++||+.
T Consensus 175 vn~l~FHP---re~ILiS~srD~tvKlFDfsK~saKrA~K~~qd~~~vrsiSf---HPsGefllvgTdHp~~rlYdv~-- 246 (430)
T KOG0640|consen 175 VNDLDFHP---RETILISGSRDNTVKLFDFSKTSAKRAFKVFQDTEPVRSISF---HPSGEFLLVGTDHPTLRLYDVN-- 246 (430)
T ss_pred ccceeecc---hhheEEeccCCCeEEEEecccHHHHHHHHHhhccceeeeEee---cCCCceEEEecCCCceeEEecc--
Confidence 99999999 999999999999999999976433222211 11224556666 5789999999999999999998
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE---EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR---LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~---l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
+.++... -.+|++.|++|.+++.+++.+++|.||.|+|||--.+++
T Consensus 247 -------------------------------T~QcfvsanPd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS~rC 295 (430)
T KOG0640|consen 247 -------------------------------TYQCFVSANPDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVSNRC 295 (430)
T ss_pred -------------------------------ceeEeeecCcccccccceeEEEecCCccEEEEeccCCcEEeeccccHHH
Confidence 3333322 247999999999999999999999999999999988887
Q ss_pred cCCCCceEeeeeEEecCCc-cEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccC--c--cEEEEEEcCCCCE
Q 000602 291 KDSDSIEEVGSSVLYGHNA-RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--R--GIWRCLYDSLSSL 362 (1398)
Q Consensus 291 ~~~~~~~~i~~~~~~gh~~-~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~--~--~V~sl~~spdg~~ 362 (1398)
++.+ -..|.+ .|.++.|. ++++++.|.|.++++|++ +++++..+.+... + .-+...|+....+
T Consensus 296 -----v~t~----~~AH~gsevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l~~YtGAg~tgrq~~rtqAvFNhtEdy 366 (430)
T KOG0640|consen 296 -----VRTI----GNAHGGSEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRMLKEYTGAGTTGRQKHRTQAVFNHTEDY 366 (430)
T ss_pred -----HHHH----HhhcCCceeeeEEEccCCeEEeecCCcceeeeeeecCCceEEEEecCCcccchhhhhhhhhcCccce
Confidence 4422 245654 68888887 789999999999999999 9999999876521 1 1233457777777
Q ss_pred EEEEE-cCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC
Q 000602 363 LVTAG-FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1398)
Q Consensus 363 latgg-~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g 440 (1398)
++.-. ..+.+.-||.+...-.. + .--+|.+.++.+.-+|.+..+++++++
T Consensus 367 Vl~pDEas~slcsWdaRtadr~~---------------l-------------~slgHn~a~R~i~HSP~~p~FmTcsdD 417 (430)
T KOG0640|consen 367 VLFPDEASNSLCSWDARTADRVA---------------L-------------LSLGHNGAVRWIVHSPVEPAFMTCSDD 417 (430)
T ss_pred EEccccccCceeeccccchhhhh---------------h-------------cccCCCCCceEEEeCCCCCceeeeccc
Confidence 66544 35678889885321111 1 112578899999999988766666554
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.83 E-value=1.8e-17 Score=188.93 Aligned_cols=223 Identities=17% Similarity=0.263 Sum_probs=162.7
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE--E---E
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--I---L 171 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~--~---~ 171 (1398)
+.+-|.-+...+. +.+.+..+.+|.+.|+++.|+|+ ...+||||+.|..|+||.+..+-. + .
T Consensus 55 ~~lgvlPl~~~Gr-----------~~r~i~~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~LSape 121 (1012)
T KOG1445|consen 55 GKLGVLPLTAKGR-----------RTRDIGILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKLSAPE 121 (1012)
T ss_pred ceEEEEeccccCc-----------cccccceeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCcccccCCcc
Confidence 4667766654221 13456677899999999999996 667899999999999999985422 1 1
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
...++..-++-++.|++.. |+ |...+.-|.+++||+. +.+.+..
T Consensus 122 ~~~g~~~~~vE~l~fHpTa-Dg--il~s~a~g~v~i~D~s---------------------------------tqk~~~e 165 (1012)
T KOG1445|consen 122 IDVGGGNVIVECLRFHPTA-DG--ILASGAHGSVYITDIS---------------------------------TQKTAVE 165 (1012)
T ss_pred eeecCCceEEEEeecccCc-Cc--eEEeccCceEEEEEcc---------------------------------cCceeec
Confidence 1224555667778886542 33 4444567999999998 7788889
Q ss_pred EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc-EEEEEEcCC--EEEEEeCC-
Q 000602 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR-VWDCCLTDS--FIITAGED- 327 (1398)
Q Consensus 252 l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~-V~~l~~s~~--~l~sgs~D- 327 (1398)
+.+|.+.|.+..|+.||..|++++.|+.|+|||.+..... ++ ...+|.+. =..+.|.|+ .|++.+.+
T Consensus 166 l~~h~d~vQSa~WseDG~llatscKdkqirifDPRa~~~p----iQ-----~te~H~~~rdsRv~w~Gn~~rlisTGF~~ 236 (1012)
T KOG1445|consen 166 LSGHTDKVQSADWSEDGKLLATSCKDKQIRIFDPRASMEP----IQ-----TTEGHGGMRDSRVLWAGNWERLISTGFTT 236 (1012)
T ss_pred ccCCchhhhccccccCCceEeeecCCcceEEeCCccCCCc----cc-----cccccccchhheeeeccchhhhhhcccch
Confidence 9999999999999999999999999999999999875431 33 55777653 345677765 67777665
Q ss_pred ---CcEEEEcC--CCceEEEEecccCccEEEEEEcCCCCEEEEEE-cCCcEEEEEc
Q 000602 328 ---CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQF 377 (1398)
Q Consensus 328 ---g~i~vWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~latgg-~Dg~I~iwdl 377 (1398)
..+++||. =+..++++......+|.--.|.||.++|+.+| .+.++..+.+
T Consensus 237 ~R~reV~~~Dtr~f~~p~~tleld~stGvLiPl~DpDt~llfLaGKG~~~l~~lE~ 292 (1012)
T KOG1445|consen 237 KRIREVRAYDTRKFGAPVHTLELDSSTGVLIPLYDPDTRLLFLAGKGTNKLFMLEM 292 (1012)
T ss_pred hhheeeeeeeccccCCcceeEEeecccceEeeeecCCCceEEEecCCcceEEEEEe
Confidence 46899998 35666666655444566667899988665544 4667777666
|
|
| >KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.82 E-value=2e-18 Score=182.88 Aligned_cols=289 Identities=18% Similarity=0.230 Sum_probs=198.1
Q ss_pred eCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCc
Q 000602 253 VGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1398)
Q Consensus 253 ~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~ 329 (1398)
...++.|.+|+||| ...+++.+|.|++||+|++...... .. .....|.++|.+++|+ +..+++|+.|+.
T Consensus 24 ~pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~----~~----ka~~~~~~PvL~v~WsddgskVf~g~~Dk~ 95 (347)
T KOG0647|consen 24 NPPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQL----VP----KAQQSHDGPVLDVCWSDDGSKVFSGGCDKQ 95 (347)
T ss_pred CCcccchheeEeccccCceEEecccCCceEEEEEecCCcc----cc----hhhhccCCCeEEEEEccCCceEEeeccCCc
Confidence 34678999999999 5556678999999999999874221 11 2667899999999998 689999999999
Q ss_pred EEEEcCCCceEEEEecccCccEEEEEEcCCCC--EEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCC
Q 000602 330 CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPN 407 (1398)
Q Consensus 330 i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~--~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~ 407 (1398)
+++||+...++..+..|.+ +|..+.|-+... .|+||+.|.+|++||++.. .++..+.+|+
T Consensus 96 ~k~wDL~S~Q~~~v~~Hd~-pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~-----------------~pv~t~~LPe 157 (347)
T KOG0647|consen 96 AKLWDLASGQVSQVAAHDA-PVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSS-----------------NPVATLQLPE 157 (347)
T ss_pred eEEEEccCCCeeeeeeccc-ceeEEEEecCCCcceeEecccccceeecccCCC-----------------Ceeeeeeccc
Confidence 9999994447888889999 799999976655 8999999999999999632 2344444443
Q ss_pred CccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEE
Q 000602 408 FSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487 (1398)
Q Consensus 408 ~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~l 487 (1398)
.+.++..-. ..+++++.+..|..+++.+..+.. ++ .+..-...+.|+++. .+.+..
T Consensus 158 -------------RvYa~Dv~~-pm~vVata~r~i~vynL~n~~te~-k~-~~SpLk~Q~R~va~f--------~d~~~~ 213 (347)
T KOG0647|consen 158 -------------RVYAADVLY-PMAVVATAERHIAVYNLENPPTEF-KR-IESPLKWQTRCVACF--------QDKDGF 213 (347)
T ss_pred -------------eeeehhccC-ceeEEEecCCcEEEEEcCCCcchh-hh-hcCcccceeeEEEEE--------ecCCce
Confidence 222222211 145667778888888776544322 11 112234456667663 334455
Q ss_pred EEEeCCCCEEEEEEcCCccccceeeeeeeecCcccc-eeE-EEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCc
Q 000602 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQ-LLG-TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSK 565 (1398)
Q Consensus 488 a~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~-~l~-~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~ 565 (1398)
|+|+.+|++-|..++.+.......+........... +-. --++|+|.-..|+|+|.||++..||-+...
T Consensus 214 alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~--------- 284 (347)
T KOG0647|consen 214 ALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDART--------- 284 (347)
T ss_pred EeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhh---------
Confidence 999999999999998765433222222221111111 100 125788988899999999999999976421
Q ss_pred cceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCc
Q 000602 566 TNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 566 ~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~ 612 (1398)
++. . ...|..+|+|.+|+.+|.++|=+. =||++.+
T Consensus 285 ----kLk-~-s~~~~qpItcc~fn~~G~ifaYA~------gYDWSkG 319 (347)
T KOG0647|consen 285 ----KLK-T-SETHPQPITCCSFNRNGSIFAYAL------GYDWSKG 319 (347)
T ss_pred ----hhh-c-cCcCCCccceeEecCCCCEEEEEe------ecccccc
Confidence 111 1 236889999999999888887432 3566554
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.2e-18 Score=194.92 Aligned_cols=261 Identities=18% Similarity=0.257 Sum_probs=194.2
Q ss_pred eeccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe----------EEEEEEeeeCccEEEEEEeccccccCCC
Q 000602 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT----------LIRPFQVFHGIRLHGISCNFINCTEGSV 83 (1398)
Q Consensus 15 ~h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~----------~l~~~~~~~~~~V~~i~fs~~~~~~~pd 83 (1398)
.|.+.|+.+.+- |. ...++|+++ ++.|.|||..+.. .-.++.+|+. .=.++.|++. ..
T Consensus 122 ~h~gEVnRaRym--PQ---np~iVAt~t~~~dv~Vfd~tk~~s~~~~~~~~~Pdl~L~gH~~-eg~glsWn~~-----~~ 190 (422)
T KOG0264|consen 122 NHDGEVNRARYM--PQ---NPNIVATKTSSGDVYVFDYTKHPSKPKASGECRPDLRLKGHEK-EGYGLSWNRQ-----QE 190 (422)
T ss_pred cCCccchhhhhC--CC---CCcEEEecCCCCCEEEEEeccCCCcccccccCCCceEEEeecc-cccccccccc-----cc
Confidence 388999999998 86 245666666 6999999986421 1126777776 3577888833 23
Q ss_pred CccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEE
Q 000602 84 STRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1398)
Q Consensus 84 g~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd 163 (1398)
| .+|.++.|++|.+||+........ .......+.+|.+.|.+++|+| .+..++++++.|+.+.|||
T Consensus 191 g----~Lls~~~d~~i~lwdi~~~~~~~~--------~~~p~~~~~~h~~~VeDV~~h~--~h~~lF~sv~dd~~L~iwD 256 (422)
T KOG0264|consen 191 G----TLLSGSDDHTICLWDINAESKEDK--------VVDPKTIFSGHEDVVEDVAWHP--LHEDLFGSVGDDGKLMIWD 256 (422)
T ss_pred e----eEeeccCCCcEEEEeccccccCCc--------cccceEEeecCCcceehhhccc--cchhhheeecCCCeEEEEE
Confidence 3 455555589999999986431111 1345667889999999999999 3667899999999999999
Q ss_pred cCCC--eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 164 ISNS--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 164 ~~~~--~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
++++ +.......+ ...+.+++|-+. ++..||+|+.|++|.+||++
T Consensus 257 ~R~~~~~~~~~~~ah-~~~vn~~~fnp~--~~~ilAT~S~D~tV~LwDlR------------------------------ 303 (422)
T KOG0264|consen 257 TRSNTSKPSHSVKAH-SAEVNCVAFNPF--NEFILATGSADKTVALWDLR------------------------------ 303 (422)
T ss_pred cCCCCCCCccccccc-CCceeEEEeCCC--CCceEEeccCCCcEEEeech------------------------------
Confidence 9953 333333333 445788888544 47889999999999999998
Q ss_pred cccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCC-----CCceEeeeeEEecCCccEEEEE
Q 000602 242 QQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDS-----DSIEEVGSSVLYGHNARVWDCC 315 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~-----~~~~~i~~~~~~gh~~~V~~l~ 315 (1398)
.-.+++..+.+|+..|++|.|+|.. ..|||++.|+.+.+||+..-..... +...++- ..-.||...|..+.
T Consensus 304 --nL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEll-F~HgGH~~kV~Dfs 380 (422)
T KOG0264|consen 304 --NLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELL-FIHGGHTAKVSDFS 380 (422)
T ss_pred --hcccCceeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCccee-EEecCccccccccc
Confidence 2345788999999999999999965 5789999999999999986433210 0011111 35568999999999
Q ss_pred Ec---CCEEEEEeCCCcEEEEcCC
Q 000602 316 LT---DSFIITAGEDCTCRVWGSD 336 (1398)
Q Consensus 316 ~s---~~~l~sgs~Dg~i~vWd~~ 336 (1398)
|+ |-.|++.++|+.+.||...
T Consensus 381 Wnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 381 WNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CCCCCCeEEEEecCCceEEEeecc
Confidence 98 4689999999999999974
|
|
| >KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.7e-18 Score=193.16 Aligned_cols=273 Identities=16% Similarity=0.240 Sum_probs=214.0
Q ss_pred eCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc--CCCcEEEEEEE
Q 000602 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVFDVCFL 141 (1398)
Q Consensus 64 ~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~~v~fs 141 (1398)
++.-|..+.+| ... +.+-++|.+.|+|||+..... ...+..|.. -...|.++..+
T Consensus 418 HGEvVcAvtIS-------~~t----rhVyTgGkgcVKVWdis~pg~------------k~PvsqLdcl~rdnyiRSckL~ 474 (705)
T KOG0639|consen 418 HGEVVCAVTIS-------NPT----RHVYTGGKGCVKVWDISQPGN------------KSPVSQLDCLNRDNYIRSCKLL 474 (705)
T ss_pred cCcEEEEEEec-------CCc----ceeEecCCCeEEEeeccCCCC------------CCccccccccCcccceeeeEec
Confidence 44457778887 332 788889999999999986431 122333333 23579999999
Q ss_pred eecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC-cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCC
Q 000602 142 KVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN 220 (1398)
Q Consensus 142 p~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~-~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~ 220 (1398)
| ||+.|++|+.-.++.|||+.........+-.. ...+|.++. ++|.++.+++..||.|.|||+.
T Consensus 475 p---dgrtLivGGeastlsiWDLAapTprikaeltssapaCyALa~---spDakvcFsccsdGnI~vwDLh--------- 539 (705)
T KOG0639|consen 475 P---DGRTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAI---SPDAKVCFSCCSDGNIAVWDLH--------- 539 (705)
T ss_pred C---CCceEEeccccceeeeeeccCCCcchhhhcCCcchhhhhhhc---CCccceeeeeccCCcEEEEEcc---------
Confidence 9 99999999999999999998655433222111 223556665 8999999999999999999998
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEee
Q 000602 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVG 300 (1398)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~ 300 (1398)
....++.|.||.+.+.||.+++||..|-||+-|.+||-||+++++..
T Consensus 540 ------------------------nq~~VrqfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrql--------- 586 (705)
T KOG0639|consen 540 ------------------------NQTLVRQFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQL--------- 586 (705)
T ss_pred ------------------------cceeeecccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhhh---------
Confidence 56778899999999999999999999999999999999999998652
Q ss_pred eeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 301 SSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 301 ~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
........|.++.++ +.+|+.|-+++.+.|-..++.....+..|.. -|.++.|.+-|+|+++.|.|..+..|...
T Consensus 587 --qqhdF~SQIfSLg~cP~~dWlavGMens~vevlh~skp~kyqlhlheS-cVLSlKFa~cGkwfvStGkDnlLnawrtP 663 (705)
T KOG0639|consen 587 --QQHDFSSQIFSLGYCPTGDWLAVGMENSNVEVLHTSKPEKYQLHLHES-CVLSLKFAYCGKWFVSTGKDNLLNAWRTP 663 (705)
T ss_pred --hhhhhhhhheecccCCCccceeeecccCcEEEEecCCccceeeccccc-EEEEEEecccCceeeecCchhhhhhccCc
Confidence 222334578888887 5899999999999999888888888888888 69999999999999999999999999983
Q ss_pred CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCC
Q 000602 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHG 440 (1398)
Q Consensus 379 ~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g 440 (1398)
.+..+|... ....|.+..++.|++++++++..
T Consensus 664 -----------------yGasiFqsk-------------E~SsVlsCDIS~ddkyIVTGSGd 695 (705)
T KOG0639|consen 664 -----------------YGASIFQSK-------------ESSSVLSCDISFDDKYIVTGSGD 695 (705)
T ss_pred -----------------cccceeecc-------------ccCcceeeeeccCceEEEecCCC
Confidence 122233221 23468888999999988887543
|
|
| >KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-17 Score=176.64 Aligned_cols=278 Identities=18% Similarity=0.269 Sum_probs=199.8
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vW 333 (1398)
.+..|.+|.|+|.+..|+.++.||++++||+..... .....|..++.+++|. ...+++|+.||.|+.+
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l-----------~~~~~~~~plL~c~F~d~~~~~~G~~dg~vr~~ 80 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSL-----------KLKFKHGAPLLDCAFADESTIVTGGLDGQVRRY 80 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhh-----------hhheecCCceeeeeccCCceEEEeccCceEEEE
Confidence 367899999999999999999999999999998755 2667899999999998 5899999999999999
Q ss_pred cCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCC-cccccCCCccccccCCccEEEeeeCCCccce
Q 000602 334 GSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1398)
Q Consensus 334 d~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~-l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 412 (1398)
|++......+..|.. +|.++.+++....+++||.|++|++||.+... ..++
T Consensus 81 Dln~~~~~~igth~~-~i~ci~~~~~~~~vIsgsWD~~ik~wD~R~~~~~~~~--------------------------- 132 (323)
T KOG1036|consen 81 DLNTGNEDQIGTHDE-GIRCIEYSYEVGCVISGSWDKTIKFWDPRNKVVVGTF--------------------------- 132 (323)
T ss_pred EecCCcceeeccCCC-ceEEEEeeccCCeEEEcccCccEEEEecccccccccc---------------------------
Confidence 997766777777887 79999999988899999999999999996421 0000
Q ss_pred eeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeC
Q 000602 413 RLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1398)
Q Consensus 413 ~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~ 492 (1398)
...+.|.++....+ ++++++.+.++..|++.+..... +..+-.-...+.|+.+.+ .+.=.++++-
T Consensus 133 ----d~~kkVy~~~v~g~-~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~p--------n~eGy~~sSi 197 (323)
T KOG1036|consen 133 ----DQGKKVYCMDVSGN-RLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVP--------NGEGYVVSSI 197 (323)
T ss_pred ----ccCceEEEEeccCC-EEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEec--------CCCceEEEee
Confidence 01124566655443 78888999999877765543311 222333356677777744 2344688899
Q ss_pred CCCEEEEEEcCCccccceeeeeeeec--CcccceeE--EEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccce
Q 000602 493 KGNMTIVRVVGDVHTPQLSFTFTWSA--GIERQLLG--TYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN 568 (1398)
Q Consensus 493 dG~I~Iwd~~~~~~~~~~~~~~~~~~--~~~~~~l~--~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~ 568 (1398)
||+|.+=.++........+..+..+. .....+.- -.+.|+|-..+|+||+.||.|.+||+.....
T Consensus 198 eGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr----------- 266 (323)
T KOG1036|consen 198 EGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR----------- 266 (323)
T ss_pred cceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-----------
Confidence 99998866655433332232232222 22222111 0256888888899999999999999875421
Q ss_pred eeeeeeeccccCCcEEEEEeecCCCEEEEecCC
Q 000602 569 VFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1398)
Q Consensus 569 l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~d 601 (1398)
+. ++ .+....|.+++|+.||..||+|+.-
T Consensus 267 l~---q~-~~~~~SI~slsfs~dG~~LAia~sy 295 (323)
T KOG1036|consen 267 LK---QL-AKYETSISSLSFSMDGSLLAIASSY 295 (323)
T ss_pred hh---hc-cCCCCceEEEEeccCCCeEEEEech
Confidence 11 21 2345679999999999999999763
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.80 E-value=8.6e-18 Score=176.79 Aligned_cols=298 Identities=17% Similarity=0.265 Sum_probs=215.8
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe------EEEEE----E----eeeCccEEEEEEecccccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT------LIRPF----Q----VFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~------~l~~~----~----~~~~~~V~~i~fs~~~~~~ 80 (1398)
|.|.|+++.+. +. .|+|+++|. ||.|.|||++... ++... . ..+...|..+.|-
T Consensus 42 HgGsvNsL~id--~t---egrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~Wy------ 110 (397)
T KOG4283|consen 42 HGGSVNSLQID--LT---EGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWY------ 110 (397)
T ss_pred CCCccceeeec--cc---cceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEe------
Confidence 88999999998 64 489999998 8999999997532 11111 1 1123467777777
Q ss_pred CCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeE
Q 000602 81 GSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSI 159 (1398)
Q Consensus 81 ~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V 159 (1398)
|-.+ .++.+++ |.+++|||..+ ++....++ ..+.|.+-+++|....-.++|+|..|-.|
T Consensus 111 -P~Dt---GmFtssSFDhtlKVWDtnT---------------lQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~V 170 (397)
T KOG4283|consen 111 -PIDT---GMFTSSSFDHTLKVWDTNT---------------LQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQV 170 (397)
T ss_pred -eecC---ceeecccccceEEEeeccc---------------ceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcE
Confidence 4331 4666666 99999999986 33333332 45778889999866566789999999999
Q ss_pred EEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
++.|+.+|.....+.+|... +.++.|.+. ..-.|++|+.||.|++||++.. .+.++.
T Consensus 171 rLCDi~SGs~sH~LsGHr~~-vlaV~Wsp~--~e~vLatgsaDg~irlWDiRra--------------------sgcf~~ 227 (397)
T KOG4283|consen 171 RLCDIASGSFSHTLSGHRDG-VLAVEWSPS--SEWVLATGSADGAIRLWDIRRA--------------------SGCFRV 227 (397)
T ss_pred EEEeccCCcceeeeccccCc-eEEEEeccC--ceeEEEecCCCceEEEEEeecc--------------------cceeEE
Confidence 99999999999999877654 667777432 3456788999999999999821 122222
Q ss_pred ccccc--ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc------E
Q 000602 240 QDQQH--TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR------V 311 (1398)
Q Consensus 240 ~~~~~--~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~------V 311 (1398)
.|... ..+.+..-..|.+.|++++|+.|+.++++++.|..+++|+...++.. .++.++ .-|+.. |
T Consensus 228 lD~hn~k~~p~~~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~nt----l~~~g~---~~~n~~~~~~~~~ 300 (397)
T KOG4283|consen 228 LDQHNTKRPPILKTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNT----LREFGP---IIHNQTTSFAVHI 300 (397)
T ss_pred eecccCccCccccccccccceeeeeeecccchhhhhccCccceEEeecccCccc----cccccc---ccccccccceEEE
Confidence 22221 11223334679999999999999999999999999999999988653 222221 111111 2
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 312 WDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 312 ~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.+. +...++---.++++.++++ +|..+..+..|.. .|.+.++-|+-....+|..|+.|..|..
T Consensus 301 ~~~--~s~vfv~~p~~~~lall~~~sgs~ir~l~~h~k-~i~c~~~~~~fq~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 301 QSM--DSDVFVLFPNDGSLALLNLLEGSFVRRLSTHLK-RINCAAYRPDFEQCFTGDMNGNIYMWSP 364 (397)
T ss_pred eec--ccceEEEEecCCeEEEEEccCceEEEeeecccc-eeeEEeecCchhhhhccccCCccccccc
Confidence 211 1234444456689999999 9999999999955 7999999999899999999999999987
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.79 E-value=5.9e-18 Score=189.22 Aligned_cols=275 Identities=14% Similarity=0.196 Sum_probs=204.6
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccccc
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~~~ 122 (1398)
.++.+||+.||..+.++++.....-+++..- .+. .++++ .+...+.+|.+....
T Consensus 18 ~~~~~~dl~TGt~~~~ykg~~~a~~~sl~~l------~~~-----yllsaq~~rp~l~vw~i~k~~-------------- 72 (476)
T KOG0646|consen 18 INCIVWDLRTGTSLLQYKGSYLAQAASLTAL------NNE-----YLLSAQLKRPLLHVWEILKKD-------------- 72 (476)
T ss_pred cceeEEecCCCceeEEecCcccccchhhhhh------chh-----heeeecccCccccccccCchh--------------
Confidence 5699999999999888876411112222221 021 33333 336789999987522
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d 202 (1398)
... ...--.++|.+++-+| +|.+|+.|+-.+.+.+|.+.+|..+..+..| ...+.++.| +.|+..|++|+.|
T Consensus 73 ~~~-q~~v~Pg~v~al~s~n---~G~~l~ag~i~g~lYlWelssG~LL~v~~aH-YQ~ITcL~f---s~dgs~iiTgskD 144 (476)
T KOG0646|consen 73 QVV-QYIVLPGPVHALASSN---LGYFLLAGTISGNLYLWELSSGILLNVLSAH-YQSITCLKF---SDDGSHIITGSKD 144 (476)
T ss_pred hhh-hhcccccceeeeecCC---CceEEEeecccCcEEEEEeccccHHHHHHhh-ccceeEEEE---eCCCcEEEecCCC
Confidence 111 1223457899999999 9999988889999999999999988777544 345677777 7789999999999
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC--CCEEEEEECCCeE
Q 000602 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC--GSKLVSVSDDRSA 280 (1398)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd--g~~LaS~s~Dg~V 280 (1398)
|.|.+|.+..- .+++ ......+++.+..|.-+|+.+...+- ..+|+|+|.|+++
T Consensus 145 g~V~vW~l~~l-----------v~a~-------------~~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~ 200 (476)
T KOG0646|consen 145 GAVLVWLLTDL-----------VSAD-------------NDHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTI 200 (476)
T ss_pred ccEEEEEEEee-----------cccc-------------cCCCccceeeeccCcceeEEEEecCCCccceEEEecCCceE
Confidence 99999998610 0000 11146788899999999999988765 4689999999999
Q ss_pred EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC---C--------------CceEE
Q 000602 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---D--------------GKQLK 341 (1398)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~---~--------------g~~l~ 341 (1398)
++||+..+.. + .-..-...+.+++.+ +..++.|+++|.|.+.++ . +..+.
T Consensus 201 k~wdlS~g~L-----L------lti~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~ 269 (476)
T KOG0646|consen 201 KLWDLSLGVL-----L------LTITFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQIN 269 (476)
T ss_pred EEEEecccee-----e------EEEecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceee
Confidence 9999999876 2 222334678888887 589999999999998877 2 12456
Q ss_pred EEecccC-ccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCccccc
Q 000602 342 MIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLE 386 (1398)
Q Consensus 342 ~l~~h~~-~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~ 386 (1398)
.+.+|.+ .+|+|++++-||..|++|+.||.|+|||+. .++++++.
T Consensus 270 ~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 270 VLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 6778876 569999999999999999999999999994 45555543
|
|
| >KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=5.8e-18 Score=174.35 Aligned_cols=243 Identities=19% Similarity=0.224 Sum_probs=181.7
Q ss_pred CCEEEEEe-CCcEEEEECCCC---eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCC
Q 000602 35 LPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELS 109 (1398)
Q Consensus 35 g~lLaag~-dg~I~Iwd~~tg---~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~ 109 (1398)
|+.||+++ |++|+|+.++.. +++.++.+|.+ +|+.++|.-. .-| .+||+++ |+.|.||.-+.+.
T Consensus 23 gkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~G-PVwqv~wahP-----k~G----~iLAScsYDgkVIiWke~~g~- 91 (299)
T KOG1332|consen 23 GKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSG-PVWKVAWAHP-----KFG----TILASCSYDGKVIIWKEENGR- 91 (299)
T ss_pred cceeeeecCCccEEEEEEcCCCCceeeeEecCCCC-CeeEEeeccc-----ccC----cEeeEeecCceEEEEecCCCc-
Confidence 66777766 999999999754 57889999888 9999999711 234 6888888 9999999987643
Q ss_pred CCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC--eEEEEEccCCcceEEEEEee
Q 000602 110 PNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLW 187 (1398)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~--~~~~~l~~~~~~~~~s~~~~ 187 (1398)
.........|...|++|+|.|. +-|-.|++++.||.|.|.+.++. -....+...+..-+.++.+.
T Consensus 92 ------------w~k~~e~~~h~~SVNsV~waph-eygl~LacasSDG~vsvl~~~~~g~w~t~ki~~aH~~GvnsVswa 158 (299)
T KOG1332|consen 92 ------------WTKAYEHAAHSASVNSVAWAPH-EYGLLLACASSDGKVSVLTYDSSGGWTTSKIVFAHEIGVNSVSWA 158 (299)
T ss_pred ------------hhhhhhhhhhcccceeeccccc-ccceEEEEeeCCCcEEEEEEcCCCCccchhhhhccccccceeeec
Confidence 5666677789999999999993 25678999999999999988653 22222322223335555554
Q ss_pred cCCCCC-----------cEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc
Q 000602 188 GDNLEA-----------LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE 256 (1398)
Q Consensus 188 ~~s~d~-----------~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~ 256 (1398)
+.+..| ..|++|+.|+.|+||+...+ +...-.+|.+|.
T Consensus 159 pa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~-------------------------------~w~~e~~l~~H~ 207 (299)
T KOG1332|consen 159 PASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSD-------------------------------SWKLERTLEGHK 207 (299)
T ss_pred CcCCCccccccCcccccceeeccCCccceeeeecCCc-------------------------------chhhhhhhhhcc
Confidence 433333 57999999999999998811 223334589999
Q ss_pred CCEEEEEEcCCC----CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcE
Q 000602 257 GSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1398)
Q Consensus 257 ~~I~~vafspdg----~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i 330 (1398)
+.|+.++|.|.- .+|||||+||++.||....... +.+...+......+|.+.|+ ++.|+.++.|..+
T Consensus 208 dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e-------~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdNkv 280 (299)
T KOG1332|consen 208 DWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYE-------PWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDNKV 280 (299)
T ss_pred hhhhhhhhccccCCCceeeEEecCCCcEEEEEecCccC-------cccccccccCCcceEEEEEeccccEEEEecCCcEE
Confidence 999999999964 4799999999999998873322 11112444456789999998 8999999999999
Q ss_pred EEEcC--CCce
Q 000602 331 RVWGS--DGKQ 339 (1398)
Q Consensus 331 ~vWd~--~g~~ 339 (1398)
.+|.- +|+-
T Consensus 281 tlwke~~~Gkw 291 (299)
T KOG1332|consen 281 TLWKENVDGKW 291 (299)
T ss_pred EEEEeCCCCcE
Confidence 99986 4543
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.78 E-value=9.2e-17 Score=170.77 Aligned_cols=276 Identities=17% Similarity=0.230 Sum_probs=194.4
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeeeCccEEEEEEeccccccCCCCccceeE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg----~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
|..=|+++.|. +- |+.+|+|+ |.+|+|||..+. .+-...+.|.+ .|..|.|... .-| ..
T Consensus 12 h~DlihdVs~D--~~----GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~-Si~rV~WAhP-----EfG----qv 75 (361)
T KOG2445|consen 12 HKDLIHDVSFD--FY----GRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDG-SIWRVVWAHP-----EFG----QV 75 (361)
T ss_pred Ccceeeeeeec--cc----CceeeeccCCCcEEEEeccCCCCceEEeeeEEecCC-cEEEEEecCc-----ccc----ce
Confidence 55669999998 76 88888888 899999996432 56677888877 7999999732 234 68
Q ss_pred EEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 91 la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
+|+++ |++++||.=....... ...+.....++......|++|.|.| ..-|-.||+++.||.+|||+.-+.-.
T Consensus 76 vA~cS~Drtv~iWEE~~~~~~~------~~~~Wv~~ttl~DsrssV~DV~FaP-~hlGLklA~~~aDG~lRIYEA~dp~n 148 (361)
T KOG2445|consen 76 VATCSYDRTVSIWEEQEKSEEA------HGRRWVRRTTLVDSRSSVTDVKFAP-KHLGLKLAAASADGILRIYEAPDPMN 148 (361)
T ss_pred EEEEecCCceeeeeeccccccc------ccceeEEEEEeecCCcceeEEEecc-hhcceEEEEeccCcEEEEEecCCccc
Confidence 88877 9999999864211000 0113566777888889999999999 22466899999999999998855322
Q ss_pred E------EEEc------cCCcceEEEEEeecCCCCCcEEEEEECC-----CeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000602 170 I------LEVH------SPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1398)
Q Consensus 170 ~------~~l~------~~~~~~~~s~~~~~~s~d~~~lasgs~d-----g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1398)
+ .++. +......+++.+.+.-....+||.|+.+ +.++||....+
T Consensus 149 Ls~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~------------------- 209 (361)
T KOG2445|consen 149 LSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNEN------------------- 209 (361)
T ss_pred cccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEecCC-------------------
Confidence 2 2222 1122345556554333345678888765 57888887611
Q ss_pred CcceeeecccccceeEEEEEeCccCCEEEEEEcCCC----CEEEEEECCCeEEEEEcCCCccc-------CC-----CCc
Q 000602 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----SKLVSVSDDRSARIWEVRAEYWK-------DS-----DSI 296 (1398)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg----~~LaS~s~Dg~V~iWd~~~~~~~-------~~-----~~~ 296 (1398)
......+..+.+|..+|+.|+|.|+- ..||+++.|| |+||.+...... .+ ..+
T Consensus 210 ----------~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v 278 (361)
T KOG2445|consen 210 ----------GRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPV 278 (361)
T ss_pred ----------cceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccce
Confidence 01344566788999999999999954 4689999999 999999853311 11 112
Q ss_pred eEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCC----CceEEEEecc
Q 000602 297 EEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD----GKQLKMIKEH 346 (1398)
Q Consensus 297 ~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~----g~~l~~l~~h 346 (1398)
+.+ ..+.+|.+.||.+.|+ |..|.+.|.||.+|+|..+ -++...++..
T Consensus 279 ~~v--s~~~~H~~~VWrv~wNmtGtiLsStGdDG~VRLWkany~n~~kC~sv~~~e 332 (361)
T KOG2445|consen 279 EKV--SELDDHNGEVWRVRWNMTGTILSSTGDDGCVRLWKANYNNLWKCTSVLKAE 332 (361)
T ss_pred EEe--eeccCCCCceEEEEEeeeeeEEeecCCCceeeehhhhhhhhheeeeEEecc
Confidence 333 3678999999999998 8999999999999999872 2444445443
|
|
| >KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.78 E-value=1.3e-17 Score=186.55 Aligned_cols=253 Identities=14% Similarity=0.205 Sum_probs=189.9
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecC
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 145 (1398)
.|+.++.- |.. +.++|+.. .+.|.|||..........-. ...+-.+|.||.+.=.++.|++ .
T Consensus 126 EVnRaRym-------PQn---p~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----~~~Pdl~L~gH~~eg~glsWn~--~ 188 (422)
T KOG0264|consen 126 EVNRARYM-------PQN---PNIVATKTSSGDVYVFDYTKHPSKPKASG-----ECRPDLRLKGHEKEGYGLSWNR--Q 188 (422)
T ss_pred cchhhhhC-------CCC---CcEEEecCCCCCEEEEEeccCCCcccccc-----cCCCceEEEeeccccccccccc--c
Confidence 46666655 443 25666655 78999999986432111100 1334457789998888899998 2
Q ss_pred CCcEEEEEECCCeEEEEEcCCCeE------EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccC
Q 000602 146 GNRSLAIGCSDNSIRVWDISNSSI------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLL 219 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~~~~------~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~ 219 (1398)
...+|++|+.|++|++||+..... ....-..+...+-.++|+.. +..++++.+.|+.+.|||.+++
T Consensus 189 ~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~--h~~lF~sv~dd~~L~iwD~R~~------ 260 (422)
T KOG0264|consen 189 QEGTLLSGSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPL--HEDLFGSVGDDGKLMIWDTRSN------ 260 (422)
T ss_pred cceeEeeccCCCcEEEEeccccccCCccccceEEeecCCcceehhhcccc--chhhheeecCCCeEEEEEcCCC------
Confidence 455789999999999999965322 12222333455667777654 4678999999999999999821
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceE
Q 000602 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298 (1398)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~ 298 (1398)
+.++.....+|++.|++++|+| ++..|||||.|++|.+||+++.... +
T Consensus 261 -------------------------~~~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~----l-- 309 (422)
T KOG0264|consen 261 -------------------------TSKPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKP----L-- 309 (422)
T ss_pred -------------------------CCCCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccC----c--
Confidence 2344556789999999999999 5567899999999999999986541 2
Q ss_pred eeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcCC--C-------------ceEEEEecccCccEEEEEEcCCC
Q 000602 299 VGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSD--G-------------KQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 299 i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~~--g-------------~~l~~l~~h~~~~V~sl~~spdg 360 (1398)
..+.+|...|.++.|+| ..|++++.|+.+.|||++ | +.+..-.||..+ |..+.|+|+.
T Consensus 310 ---h~~e~H~dev~~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~~eda~dgppEllF~HgGH~~k-V~DfsWnp~e 385 (422)
T KOG0264|consen 310 ---HTFEGHEDEVFQVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQSPEDAEDGPPELLFIHGGHTAK-VSDFSWNPNE 385 (422)
T ss_pred ---eeccCCCcceEEEEeCCCCCceeEecccCCcEEEEeccccccccChhhhccCCcceeEEecCcccc-cccccCCCCC
Confidence 48899999999999995 789999999999999982 2 234666788884 9999999988
Q ss_pred C-EEEEEEcCCcEEEEEcCC
Q 000602 361 S-LLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 361 ~-~latgg~Dg~I~iwdl~~ 379 (1398)
. .|++...|+.+.||++..
T Consensus 386 PW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 386 PWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred CeEEEEecCCceEEEeeccc
Confidence 7 567888999999999953
|
|
| >KOG0646 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.4e-18 Score=187.97 Aligned_cols=256 Identities=18% Similarity=0.225 Sum_probs=196.8
Q ss_pred cEEEEeCCcCe-------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEecc
Q 000602 5 DLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1398)
Q Consensus 5 tv~iWdl~~~~-------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~ 76 (1398)
.+.+|.+.+.. ..++|.|++-+ |+ |.||++|+ .+.|++|.+.+|.++..+..|-. .|+++.|+
T Consensus 62 ~l~vw~i~k~~~~~q~~v~Pg~v~al~s~--n~----G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ-~ITcL~fs-- 132 (476)
T KOG0646|consen 62 LLHVWEILKKDQVVQYIVLPGPVHALASS--NL----GYFLLAGTISGNLYLWELSSGILLNVLSAHYQ-SITCLKFS-- 132 (476)
T ss_pred cccccccCchhhhhhhcccccceeeeecC--CC----ceEEEeecccCcEEEEEeccccHHHHHHhhcc-ceeEEEEe--
Confidence 36788877654 46889999999 98 89999996 79999999999999998887655 79999999
Q ss_pred ccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC
Q 000602 77 NCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS 155 (1398)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~ 155 (1398)
-|| ..++++| |+.|.+|.+..-- +++.....++.+.+..|+-.|+++...+. ....+|+|++.
T Consensus 133 -----~dg----s~iiTgskDg~V~vW~l~~lv------~a~~~~~~~p~~~f~~HtlsITDl~ig~G-g~~~rl~TaS~ 196 (476)
T KOG0646|consen 133 -----DDG----SHIITGSKDGAVLVWLLTDLV------SADNDHSVKPLHIFSDHTLSITDLQIGSG-GTNARLYTASE 196 (476)
T ss_pred -----CCC----cEEEecCCCccEEEEEEEeec------ccccCCCccceeeeccCcceeEEEEecCC-CccceEEEecC
Confidence 777 5666665 9999999986421 01111135778899999999999999871 13468999999
Q ss_pred CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000602 156 DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1398)
Q Consensus 156 Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1398)
|+++++||+..+..+.++..+.. +.++.+ +|.+..++.|+.+|.|.+.++..-. +.. .+-
T Consensus 197 D~t~k~wdlS~g~LLlti~fp~s--i~av~l---Dpae~~~yiGt~~G~I~~~~~~~~~------------~~~---~~v 256 (476)
T KOG0646|consen 197 DRTIKLWDLSLGVLLLTITFPSS--IKAVAL---DPAERVVYIGTEEGKIFQNLLFKLS------------GQS---AGV 256 (476)
T ss_pred CceEEEEEeccceeeEEEecCCc--ceeEEE---cccccEEEecCCcceEEeeehhcCC------------ccc---ccc
Confidence 99999999999999988876653 445555 7889999999999999998876111 000 000
Q ss_pred eeeecccccceeEEEEEeCccC--CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEE
Q 000602 236 CFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1398)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~--~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~ 313 (1398)
..+-.+. .+..+..+.||.+ .|++++++-||..|+||+.||.|.|||+...++ ++ ++..-.++|+.
T Consensus 257 ~~k~~~~--~~t~~~~~~Gh~~~~~ITcLais~DgtlLlSGd~dg~VcvWdi~S~Q~-----iR-----tl~~~kgpVtn 324 (476)
T KOG0646|consen 257 NQKGRHE--ENTQINVLVGHENESAITCLAISTDGTLLLSGDEDGKVCVWDIYSKQC-----IR-----TLQTSKGPVTN 324 (476)
T ss_pred ccccccc--ccceeeeeccccCCcceeEEEEecCccEEEeeCCCCCEEEEecchHHH-----HH-----HHhhhccccce
Confidence 0111111 3556778899998 999999999999999999999999999999877 43 33335567887
Q ss_pred EEEc
Q 000602 314 CCLT 317 (1398)
Q Consensus 314 l~~s 317 (1398)
+.+.
T Consensus 325 L~i~ 328 (476)
T KOG0646|consen 325 LQIN 328 (476)
T ss_pred eEee
Confidence 7774
|
|
| >KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.1e-14 Score=175.29 Aligned_cols=154 Identities=19% Similarity=0.236 Sum_probs=117.6
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc----CCEEEEEEc
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE----GSIFRIEWS 265 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~----~~I~~vafs 265 (1398)
..+...++.++.++.+.+||...+. .+..+..-+ ....-+-++
T Consensus 96 ~~e~k~i~l~~~~ns~~i~d~~~~~---------------------------------~~~~i~~~er~~l~~~~~~g~s 142 (967)
T KOG0974|consen 96 FEENKKIALVTSRNSLLIRDSKNSS---------------------------------VLSKIQSDERCTLYSSLIIGDS 142 (967)
T ss_pred hhhcceEEEEEcCceEEEEecccCc---------------------------------eehhcCCCceEEEEeEEEEecc
Confidence 3466789999999999999987222 111111111 112224456
Q ss_pred CCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEE-
Q 000602 266 SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLK- 341 (1398)
Q Consensus 266 pdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~- 341 (1398)
++.-++++|+--+.|.+|+....+.. ..+.||.+.|.++.++ +.++++.++|.++|+|++ +.+.+.
T Consensus 143 ~~~~~i~~gsv~~~iivW~~~~dn~p----------~~l~GHeG~iF~i~~s~dg~~i~s~SdDRsiRlW~i~s~~~~~~ 212 (967)
T KOG0974|consen 143 AEELYIASGSVFGEIIVWKPHEDNKP----------IRLKGHEGSIFSIVTSLDGRYIASVSDDRSIRLWPIDSREVLGC 212 (967)
T ss_pred CcEEEEEeccccccEEEEeccccCCc----------ceecccCCceEEEEEccCCcEEEEEecCcceeeeecccccccCc
Confidence 77778999999999999999843331 2588999999999995 899999999999999999 655554
Q ss_pred EEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCC
Q 000602 342 MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (1398)
Q Consensus 342 ~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~ 389 (1398)
+.-+|..+ ||.+.|+|+ .++|++.|.+.++|+.++..+..+.+|.
T Consensus 213 ~~fgHsaR-vw~~~~~~n--~i~t~gedctcrvW~~~~~~l~~y~~h~ 257 (967)
T KOG0974|consen 213 TGFGHSAR-VWACCFLPN--RIITVGEDCTCRVWGVNGTQLEVYDEHS 257 (967)
T ss_pred ccccccce-eEEEEeccc--eeEEeccceEEEEEecccceehhhhhhh
Confidence 67789994 999999998 8999999999999988776666555554
|
|
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.77 E-value=6e-18 Score=198.75 Aligned_cols=287 Identities=15% Similarity=0.204 Sum_probs=213.5
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC----eEEEEEEeee--CccEEEEEEeccccccCCCCccceeE
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg----~~l~~~~~~~--~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
.++..+|... ++ ..-|+.++...++||..... .+...+.... ...+..|+|+ .- .+.+
T Consensus 39 k~~~nAIs~n--r~----~~qiv~AGrs~lklyai~~~~~~~~~~~~~k~kqn~~~S~~DVkW~-------~~---~~Nl 102 (839)
T KOG0269|consen 39 KAKANAISVN--RD----INQIVVAGRSLLKLYAINPNDFSEKCNHRFKTKQNKFYSAADVKWG-------QL---YSNL 102 (839)
T ss_pred ccccceEeec--CC----cceeEEecccceeeEeeCcccCCcceeeecccccceeeehhhcccc-------cc---hhhh
Confidence 4667788888 76 45555555678889987543 2222222111 1234455565 11 1367
Q ss_pred EEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 91 la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
||++. .|.|.+||+.... +-+++..+..|...|+++.|++ ....+|++|+.||+|++||++....
T Consensus 103 IAT~s~nG~i~vWdlnk~~------------rnk~l~~f~EH~Rs~~~ldfh~--tep~iliSGSQDg~vK~~DlR~~~S 168 (839)
T KOG0269|consen 103 IATCSTNGVISVWDLNKSI------------RNKLLTVFNEHERSANKLDFHS--TEPNILISGSQDGTVKCWDLRSKKS 168 (839)
T ss_pred heeecCCCcEEEEecCccc------------cchhhhHhhhhccceeeeeecc--CCccEEEecCCCceEEEEeeecccc
Confidence 88876 7999999998522 3467778899999999999998 2457899999999999999998877
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
..++.+... .+..+.|.+. .+..++++...|.+++||++ ...++.
T Consensus 169 ~~t~~~nSE-SiRDV~fsp~--~~~~F~s~~dsG~lqlWDlR--------------------------------qp~r~~ 213 (839)
T KOG0269|consen 169 KSTFRSNSE-SIRDVKFSPG--YGNKFASIHDSGYLQLWDLR--------------------------------QPDRCE 213 (839)
T ss_pred cccccccch-hhhceeeccC--CCceEEEecCCceEEEeecc--------------------------------CchhHH
Confidence 766665332 3455666433 47789999999999999998 245667
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEe-
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAG- 325 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs- 325 (1398)
..+..|.++|.++.|+|++.+||||+.|+.|+|||+.+.+.. . .......++|.+++|.| .+|++++
T Consensus 214 ~k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~-----~----~~tInTiapv~rVkWRP~~~~hLAtcsm 284 (839)
T KOG0269|consen 214 KKLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAK-----P----KHTINTIAPVGRVKWRPARSYHLATCSM 284 (839)
T ss_pred HHhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCcc-----c----eeEEeecceeeeeeeccCccchhhhhhc
Confidence 788999999999999999999999999999999999976541 1 12223346789999984 5788776
Q ss_pred -CCCcEEEEcCC--CceEEEEecccCccEEEEEEcC-CCCEEEEEEcCCcEEEEEcC
Q 000602 326 -EDCTCRVWGSD--GKQLKMIKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 326 -~Dg~i~vWd~~--g~~l~~l~~h~~~~V~sl~~sp-dg~~latgg~Dg~I~iwdl~ 378 (1398)
.|-.|+|||+. --+..++..|.. .++.++|.. |...+.+++.||+|....++
T Consensus 285 v~dtsV~VWDvrRPYIP~~t~~eH~~-~vt~i~W~~~d~~~l~s~sKD~tv~qh~~k 340 (839)
T KOG0269|consen 285 VVDTSVHVWDVRRPYIPYATFLEHTD-SVTGIAWDSGDRINLWSCSKDGTVLQHLFK 340 (839)
T ss_pred cccceEEEEeeccccccceeeeccCc-cccceeccCCCceeeEeecCccHHHHhhhh
Confidence 57889999993 446678999988 689999954 45688999999999877663
|
|
| >KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.77 E-value=5.7e-17 Score=172.33 Aligned_cols=263 Identities=15% Similarity=0.233 Sum_probs=193.9
Q ss_pred eeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEe
Q 000602 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1398)
Q Consensus 63 ~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 142 (1398)
|.+ -||++.|. +-|+ ++.+++.|++|+|||.+.+.. ...+....+.|.+.|+.|.|.+
T Consensus 12 h~D-lihdVs~D-------~~GR---RmAtCSsDq~vkI~d~~~~s~-----------~W~~Ts~Wrah~~Si~rV~WAh 69 (361)
T KOG2445|consen 12 HKD-LIHDVSFD-------FYGR---RMATCSSDQTVKIWDSTSDSG-----------TWSCTSSWRAHDGSIWRVVWAH 69 (361)
T ss_pred Ccc-eeeeeeec-------ccCc---eeeeccCCCcEEEEeccCCCC-----------ceEEeeeEEecCCcEEEEEecC
Confidence 444 69999999 8883 555555699999999854321 3677888899999999999986
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCC------eE--EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCC
Q 000602 143 VCNGNRSLAIGCSDNSIRVWDISNS------SI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1398)
Q Consensus 143 ~~~dg~~Latgs~Dg~V~vWd~~~~------~~--~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~ 214 (1398)
++-|+.+|+++.|+++.||.-... .. ..+.-...+..++.+.|.+. .-|..+|+++.||.++||+..
T Consensus 70 -PEfGqvvA~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~-hlGLklA~~~aDG~lRIYEA~--- 144 (361)
T KOG2445|consen 70 -PEFGQVVATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPK-HLGLKLAAASADGILRIYEAP--- 144 (361)
T ss_pred -ccccceEEEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecch-hcceEEEEeccCcEEEEEecC---
Confidence 347899999999999999986311 11 11122344566888888654 468899999999999999976
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeE-EEEEeCccCCEEEEEEcCC---CCEEEEEECC-----CeEEEEEc
Q 000602 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLVGHEGSIFRIEWSSC---GSKLVSVSDD-----RSARIWEV 285 (1398)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~-~~~l~gH~~~I~~vafspd---g~~LaS~s~D-----g~V~iWd~ 285 (1398)
+...++-|..+...+. +.....+..+-.||.|+|. ..+||.|+.+ +.+.||..
T Consensus 145 ------------------dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~ 206 (361)
T KOG2445|consen 145 ------------------DPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEY 206 (361)
T ss_pred ------------------CccccccchhhhhhhhccCCcccccCcceEEeeccccccCceEEEEcccCCccccceEEEEe
Confidence 1122333433322221 1122346778899999984 3578888776 57899988
Q ss_pred CCCcccCCCCceEeeeeEEecCCccEEEEEEcC------CEEEEEeCCCcEEEEcCCC---------------------c
Q 000602 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------SFIITAGEDCTCRVWGSDG---------------------K 338 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~------~~l~sgs~Dg~i~vWd~~g---------------------~ 338 (1398)
...... ...+ ..+.+|+.+|.+++|.| .+|++|+.|| |+||.+.. +
T Consensus 207 ~e~~rK----w~kv--a~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~ 279 (361)
T KOG2445|consen 207 NENGRK----WLKV--AELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVKVARSAIEEEEVLAPDLMTDLPVE 279 (361)
T ss_pred cCCcce----eeee--hhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEeeccchhhhhcccCCCCccccceE
Confidence 765421 2223 47789999999999985 4899999999 99999842 2
Q ss_pred eEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 339 QLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 339 ~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.+..+..|.+ .||.+.|+-.|..|++.|.||.||+|..+
T Consensus 280 ~vs~~~~H~~-~VWrv~wNmtGtiLsStGdDG~VRLWkan 318 (361)
T KOG2445|consen 280 KVSELDDHNG-EVWRVRWNMTGTILSSTGDDGCVRLWKAN 318 (361)
T ss_pred EeeeccCCCC-ceEEEEEeeeeeEEeecCCCceeeehhhh
Confidence 3556778998 59999999999999999999999999873
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=2.2e-15 Score=180.95 Aligned_cols=478 Identities=14% Similarity=0.114 Sum_probs=288.9
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~v 161 (1398)
+|+ +.+.+.-+..|.||...+ +.++..+++|..++.++.+.|..+.-.++.+++.||+|++
T Consensus 26 nD~----k~l~~~~~~~V~VyS~~T---------------g~~i~~l~~~~a~l~s~~~~~~~~~~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 26 NDA----KFLFLCTGNFVKVYSTAT---------------GECITSLEDHTAPLTSVIVLPSSENANYLIVCSLDGTIRV 86 (792)
T ss_pred cCC----cEEEEeeCCEEEEEecch---------------HhhhhhcccccCccceeeecCCCccceEEEEEecCccEEE
Confidence 887 677777788999999987 5677799999999999999983323357789999999999
Q ss_pred EEcCCCeEEEEEccCCcc--eEEEEEeecCCCCCcEEEEEECCCeE-EEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000602 162 WDISNSSIILEVHSPERC--LLYSMKLWGDNLEALRIASGTIYNEI-IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1398)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~--~~~s~~~~~~s~d~~~lasgs~dg~I-~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1398)
||...+..+..+...-.. ..+..++.. ....+..+..|..+ ...... .... .-+
T Consensus 87 wd~~~~~Llkt~~~~~~v~~~~~~~~~a~---~s~~~~~s~~~~~~~~~~s~~---~~~q-----------------~~~ 143 (792)
T KOG1963|consen 87 WDWSDGELLKTFDNNLPVHALVYKPAQAD---ISANVYVSVEDYSILTTFSKK---LSKQ-----------------SSR 143 (792)
T ss_pred ecCCCcEEEEEEecCCceeEEEechhHhC---ccceeEeecccceeeeecccc---cccc-----------------eee
Confidence 999999998877643321 222111110 11111111111111 001000 0000 000
Q ss_pred ecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-
Q 000602 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1398)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s- 317 (1398)
..-..........+.+|.. -..|.+++.|.+...+- +..+.+|+....... .... ..-..|...+.+.+++
T Consensus 144 ~~~~t~~~~~~d~~~~~~~-~~~I~~~~~ge~~~i~~-~~~~~~~~v~~~~~~--~~~~----~~~~~Htf~~t~~~~sp 215 (792)
T KOG1963|consen 144 FVLATFDSAKGDFLKEHQE-PKSIVDNNSGEFKGIVH-MCKIHIYFVPKHTKH--TSSR----DITVHHTFNITCVALSP 215 (792)
T ss_pred eEeeeccccchhhhhhhcC-CccEEEcCCceEEEEEE-eeeEEEEEeccccee--eccc----hhhhhhcccceeEEecc
Confidence 0000000111111223322 45677888887665554 447888988774320 0000 1223577778888888
Q ss_pred -CCEEEEEeCCCcEEEEcCCC-----ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCcc
Q 000602 318 -DSFIITAGEDCTCRVWGSDG-----KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEA 391 (1398)
Q Consensus 318 -~~~l~sgs~Dg~i~vWd~~g-----~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~ 391 (1398)
++++++|..||.|.+|.--+ .....++-|.. .|.+++|+++|.+|++||..|.+.+|.+.... +++.
T Consensus 216 n~~~~Aa~d~dGrI~vw~d~~~~~~~~t~t~lHWH~~-~V~~L~fS~~G~~LlSGG~E~VLv~Wq~~T~~-kqfL----- 288 (792)
T KOG1963|consen 216 NERYLAAGDSDGRILVWRDFGSSDDSETCTLLHWHHD-EVNSLSFSSDGAYLLSGGREGVLVLWQLETGK-KQFL----- 288 (792)
T ss_pred ccceEEEeccCCcEEEEeccccccccccceEEEeccc-ccceeEEecCCceEeecccceEEEEEeecCCC-cccc-----
Confidence 58999999999999998622 33456888888 59999999999999999999999999995332 2211
Q ss_pred ccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EEcCCcEEEEEeecCCCceeEEEEeecC-------
Q 000602 392 KEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLYHTKLCDMDSVNWNKILQVSE------- 463 (1398)
Q Consensus 392 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t~~g~i~~~~l~~~~~~~w~~i~~~~~------- 463 (1398)
..-..+|..+.++||+.+++ ...|.+|..++..+..... .+ ++-.
T Consensus 289 ------------------------PRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~--tI-sgi~~~~~~~k 341 (792)
T KOG1963|consen 289 ------------------------PRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKS--TI-SGIKPPTPSTK 341 (792)
T ss_pred ------------------------cccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhh--hc-cCccCCCcccc
Confidence 11235789999999986554 5678888887775543321 01 1100
Q ss_pred ---CccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeee-eecCc-ccceeEEEEEecCCCcEE
Q 000602 464 ---GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFT-WSAGI-ERQLLGTYWCKSLGHRFI 538 (1398)
Q Consensus 464 ---~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~-~~~~~-~~~~l~~~~~~s~d~~~L 538 (1398)
..-...+.+ .|..+.++..+..|.|++||+.+...+.++..... ...+. .........+.+..|.++
T Consensus 342 ~~~~~l~t~~~i--------dpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~m 413 (792)
T KOG1963|consen 342 TRPQSLTTGVSI--------DPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWM 413 (792)
T ss_pred ccccccceeEEE--------cCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEE
Confidence 000111112 13346688888899999999988776644332111 11111 122222223445568888
Q ss_pred EEEcC--------C--CcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecC--CCEEEEecCCCeEEE
Q 000602 539 FTADP--------K--GRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE--DEVLFCGDLRGNLVL 606 (1398)
Q Consensus 539 ~s~s~--------d--g~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spd--g~lLatGs~dGtI~I 606 (1398)
+|... | -.+++|-..... .+..+......+|...+.+..+.+. ....++++.||.++|
T Consensus 414 aT~E~~~d~~~~~~~e~~LKFW~~n~~~----------kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~Ki 483 (792)
T KOG1963|consen 414 ATLEARIDKFNFFDGEVSLKFWQYNPNS----------KTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKI 483 (792)
T ss_pred EEeeeeehhhhccCceEEEEEEEEcCCc----------ceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEE
Confidence 87543 2 246789776432 2334445545688877776666532 338999999999999
Q ss_pred EECCCccccccc-ccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEec
Q 000602 607 FPLLRDLLNDKS-VALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDK 671 (1398)
Q Consensus 607 wd~~~~~~~~~~-~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~ 671 (1398)
|-+.+....... ..+..+. -.. -.+..+++.+|+ .| +.+++.|.|+.|.+|+...
T Consensus 484 W~~~~~~n~~k~~s~W~c~~-i~s-----y~k~~i~a~~fs---~d-Gslla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 484 WVFTDDSNIYKKSSNWTCKA-IGS-----YHKTPITALCFS---QD-GSLLAVSFDDTITIWDYDT 539 (792)
T ss_pred EEEecccccCcCccceEEee-eec-----cccCcccchhhc---CC-CcEEEEecCCEEEEecCCC
Confidence 998654322111 1121111 111 113678888888 34 4799999999999999877
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.77 E-value=4.7e-16 Score=180.91 Aligned_cols=270 Identities=11% Similarity=0.089 Sum_probs=189.2
Q ss_pred CCCCcEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEE-EEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 1 MGKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFL-LAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 1 ~~D~tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lL-aag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
+.|+++++||+.+++ ....+.+++|+ |+ ++++ +++. ++.|++||..+++.+..+..+. .+..++
T Consensus 8 ~~d~~v~~~d~~t~~~~~~~~~~~~~~~l~~~--~d----g~~l~~~~~~~~~v~~~d~~~~~~~~~~~~~~--~~~~~~ 79 (300)
T TIGR03866 8 EKDNTISVIDTATLEVTRTFPVGQRPRGITLS--KD----GKLLYVCASDSDTIQVIDLATGEVIGTLPSGP--DPELFA 79 (300)
T ss_pred cCCCEEEEEECCCCceEEEEECCCCCCceEEC--CC----CCEEEEEECCCCeEEEEECCCCcEEEeccCCC--CccEEE
Confidence 468999999998876 22346789999 98 7766 4554 6899999999998877776433 356788
Q ss_pred EeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 73 CNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
|+ |+++ .++++.+ ++.+++||+.. .+.+..+.. ...+.+++|+| ++.+++
T Consensus 80 ~~-------~~g~---~l~~~~~~~~~l~~~d~~~---------------~~~~~~~~~-~~~~~~~~~~~---dg~~l~ 130 (300)
T TIGR03866 80 LH-------PNGK---ILYIANEDDNLVTVIDIET---------------RKVLAEIPV-GVEPEGMAVSP---DGKIVV 130 (300)
T ss_pred EC-------CCCC---EEEEEcCCCCeEEEEECCC---------------CeEEeEeeC-CCCcceEEECC---CCCEEE
Confidence 88 8873 3444444 79999999975 233344432 23468899999 999999
Q ss_pred EEECCC-eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEE-EECCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000602 152 IGCSDN-SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1398)
Q Consensus 152 tgs~Dg-~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~las-gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1398)
++..++ .+.+||..+++....+..... ...+.+ ++++.+|++ +..++.|++||+.
T Consensus 131 ~~~~~~~~~~~~d~~~~~~~~~~~~~~~--~~~~~~---s~dg~~l~~~~~~~~~v~i~d~~------------------ 187 (300)
T TIGR03866 131 NTSETTNMAHFIDTKTYEIVDNVLVDQR--PRFAEF---TADGKELWVSSEIGGTVSVIDVA------------------ 187 (300)
T ss_pred EEecCCCeEEEEeCCCCeEEEEEEcCCC--ccEEEE---CCCCCEEEEEcCCCCEEEEEEcC------------------
Confidence 888765 567789988877655433222 223444 678887754 4568999999998
Q ss_pred CCCCcceeeecccccceeEEEEEeCc-------cCCEEEEEEcCCCCEEEE-EECCCeEEEEEcCCCcccCCCCceEeee
Q 000602 230 SSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVS-VSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1398)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH-------~~~I~~vafspdg~~LaS-~s~Dg~V~iWd~~~~~~~~~~~~~~i~~ 301 (1398)
+++.+..+..+ ......++|+|++++++. .+.++.+.+||+.+++. .
T Consensus 188 ---------------~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~-----~----- 242 (300)
T TIGR03866 188 ---------------TRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEV-----L----- 242 (300)
T ss_pred ---------------cceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcE-----E-----
Confidence 23333332211 112356889999998544 45667899999987654 1
Q ss_pred eEEecCCccEEEEEEc--CCEEEEE-eCCCcEEEEcC-CCceEEEEecccCccEEEEEEcC
Q 000602 302 SVLYGHNARVWDCCLT--DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1398)
Q Consensus 302 ~~~~gh~~~V~~l~~s--~~~l~sg-s~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~sp 358 (1398)
....+...+++++|+ +++|+++ +.+++|++||+ +++.+..+.... ..+.++++|
T Consensus 243 -~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~~~~~~~~--~~~~~~~~~ 300 (300)
T TIGR03866 243 -DYLLVGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVIKSIKVGR--LPWGVVVRP 300 (300)
T ss_pred -EEEEeCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEEccc--ccceeEeCC
Confidence 122344578899997 4677775 56899999999 788888887653 469999875
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG2096 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.77 E-value=7.4e-17 Score=171.58 Aligned_cols=300 Identities=20% Similarity=0.211 Sum_probs=195.9
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE------EEEEccCCcceEEEEEeecCCCCCcE-
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI------ILEVHSPERCLLYSMKLWGDNLEALR- 195 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~------~~~l~~~~~~~~~s~~~~~~s~d~~~- 195 (1398)
-.+..|++|.+.|++++|+. ||++|||++.|++|++|+++.-.. ...++.. -...+.| .||..-
T Consensus 77 l~~~~LKgH~~~vt~~~FsS---dGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~d---hpT~V~F---apDc~s~ 147 (420)
T KOG2096|consen 77 LNVSVLKGHKKEVTDVAFSS---DGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYD---HPTRVVF---APDCKSV 147 (420)
T ss_pred hhhhhhhccCCceeeeEEcC---CCceeEEEeCCceEEEEecchhhhhhhhHhhccccCC---CceEEEE---CCCcceE
Confidence 34567899999999999999 999999999999999999975221 1112211 1233444 556554
Q ss_pred EEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE
Q 000602 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1398)
Q Consensus 196 lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s 275 (1398)
+++.-...++++|.+...+.. .+. ...--|| ....-+.|.-.|..+-....+.+|+|++
T Consensus 148 vv~~~~g~~l~vyk~~K~~dG-------------~~~--~~~v~~D------~~~f~~kh~v~~i~iGiA~~~k~imsas 206 (420)
T KOG2096|consen 148 VVSVKRGNKLCVYKLVKKTDG-------------SGS--HHFVHID------NLEFERKHQVDIINIGIAGNAKYIMSAS 206 (420)
T ss_pred EEEEccCCEEEEEEeeecccC-------------CCC--ccccccc------ccccchhcccceEEEeecCCceEEEEec
Confidence 444555678999988622110 000 0000011 0111234677777788888889999999
Q ss_pred CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC----CC-----ceEEEEe
Q 000602 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS----DG-----KQLKMIK 344 (1398)
Q Consensus 276 ~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~----~g-----~~l~~l~ 344 (1398)
.|..|.||++. ++. +. ........-+.++.+ |++|++++..-.++||+. +| ..+..++
T Consensus 207 ~dt~i~lw~lk-Gq~-----L~-----~idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~Lk 275 (420)
T KOG2096|consen 207 LDTKICLWDLK-GQL-----LQ-----SIDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLK 275 (420)
T ss_pred CCCcEEEEecC-Cce-----ee-----eeccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheec
Confidence 99999999998 443 23 333333333445555 689999999999999997 33 2456789
Q ss_pred cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-----CCcccccCCCccccccCCccEEEeeeCCCccceeec-cCC
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-----FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLT-DSK 418 (1398)
Q Consensus 345 ~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-----~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~-~~~ 418 (1398)
+|.. +|..++|+++...++|.+.||++||||.+- +....+..-. .++ ...
T Consensus 276 GH~s-aV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~-----------------------~pl~aag 331 (420)
T KOG2096|consen 276 GHQS-AVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGS-----------------------APLHAAG 331 (420)
T ss_pred cchh-heeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCC-----------------------cchhhcC
Confidence 9999 799999999999999999999999999842 1111111000 011 112
Q ss_pred CCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEE
Q 000602 419 SEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTI 498 (1398)
Q Consensus 419 ~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~I 498 (1398)
.+++ .++.+|+|..|+.+....+..+.-.+ +.-..-++.-+...|.++.+ .++++++++++ |..+++
T Consensus 332 ~~p~-RL~lsP~g~~lA~s~gs~l~~~~se~---g~~~~~~e~~h~~~Is~is~--------~~~g~~~atcG-dr~vrv 398 (420)
T KOG2096|consen 332 SEPV-RLELSPSGDSLAVSFGSDLKVFASED---GKDYPELEDIHSTTISSISY--------SSDGKYIATCG-DRYVRV 398 (420)
T ss_pred CCce-EEEeCCCCcEEEeecCCceEEEEccc---CccchhHHHhhcCceeeEEe--------cCCCcEEeeec-ceeeee
Confidence 2334 78999999999888777666443222 22111222234667888877 45678888876 557777
Q ss_pred EE
Q 000602 499 VR 500 (1398)
Q Consensus 499 wd 500 (1398)
+.
T Consensus 399 ~~ 400 (420)
T KOG2096|consen 399 IR 400 (420)
T ss_pred ec
Confidence 65
|
|
| >KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.2e-16 Score=182.40 Aligned_cols=160 Identities=15% Similarity=0.111 Sum_probs=118.0
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe--EE---EEEEeeeCccEEEEEEeccccccCCCCcccee
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT--LI---RPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~--~l---~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~ 89 (1398)
|...|+.+.|+ |= ...+||+|+ |..|+||.+..|- .+ ...-++...+|.++.|+ |.. +.
T Consensus 78 H~d~VtDl~Fs--pF---~D~LLAT~S~D~~VKiW~lp~g~~q~LSape~~~g~~~~~vE~l~fH-------pTa---Dg 142 (1012)
T KOG1445|consen 78 HGDQVTDLGFS--PF---ADELLATCSRDEPVKIWKLPRGHSQKLSAPEIDVGGGNVIVECLRFH-------PTA---DG 142 (1012)
T ss_pred ccceeeccCcc--cc---chhhhhcccCCCeeEEEecCCCcccccCCcceeecCCceEEEEeecc-------cCc---Cc
Confidence 77889999999 63 247899998 8999999998542 12 11233555689999999 443 36
Q ss_pred EEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC-Ce
Q 000602 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN-SS 168 (1398)
Q Consensus 90 ~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~-~~ 168 (1398)
+++++..+++.|||+.+ .+....+.+|.+.|.++.|+. ||.+|++.+.|..|+|||.+. ++
T Consensus 143 il~s~a~g~v~i~D~st---------------qk~~~el~~h~d~vQSa~Wse---DG~llatscKdkqirifDPRa~~~ 204 (1012)
T KOG1445|consen 143 ILASGAHGSVYITDIST---------------QKTAVELSGHTDKVQSADWSE---DGKLLATSCKDKQIRIFDPRASME 204 (1012)
T ss_pred eEEeccCceEEEEEccc---------------CceeecccCCchhhhcccccc---CCceEeeecCCcceEEeCCccCCC
Confidence 88888899999999997 566778889999999999999 999999999999999999974 66
Q ss_pred EEEEEccCCcceEEEEEeecCCCCCcEEEEEECC----CeEEEEEcc
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIY----NEIIVWKVD 211 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d----g~I~vWd~~ 211 (1398)
.++..++|.+.--.-+.|.+ +-..|++.+.+ .+|++||.+
T Consensus 205 piQ~te~H~~~rdsRv~w~G---n~~rlisTGF~~~R~reV~~~Dtr 248 (1012)
T KOG1445|consen 205 PIQTTEGHGGMRDSRVLWAG---NWERLISTGFTTKRIREVRAYDTR 248 (1012)
T ss_pred ccccccccccchhheeeecc---chhhhhhcccchhhheeeeeeecc
Confidence 67766666543222233311 12244444333 678889877
|
|
| >KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.76 E-value=2e-16 Score=166.61 Aligned_cols=231 Identities=18% Similarity=0.270 Sum_probs=167.5
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCC-CCCcccccceeeeecccCCCcEEEEEEEe
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ-YQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~-~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 142 (1398)
+..|..+.+-+ ..| ++++++| |+.|.|||++.....+.. +-. ..+.........+|.-.|.++.|-|
T Consensus 43 gGsvNsL~id~------teg----rymlSGgadgsi~v~Dl~n~t~~e~s~li~-k~~c~v~~~h~~~Hky~iss~~WyP 111 (397)
T KOG4283|consen 43 GGSVNSLQIDL------TEG----RYMLSGGADGSIAVFDLQNATDYEASGLIA-KHKCIVAKQHENGHKYAISSAIWYP 111 (397)
T ss_pred CCccceeeecc------ccc----eEEeecCCCccEEEEEeccccchhhcccee-heeeeccccCCccceeeeeeeEEee
Confidence 34788888772 233 5666665 999999999853311111 000 0000111223457888999999999
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCC
Q 000602 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 143 ~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~ 222 (1398)
+ |...+.+++-|.+++|||..+-+....+.-+. .+|+-++.+-.....+||+|+.+-+|++.|+.
T Consensus 112 ~--DtGmFtssSFDhtlKVWDtnTlQ~a~~F~me~--~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~----------- 176 (397)
T KOG4283|consen 112 I--DTGMFTSSSFDHTLKVWDTNTLQEAVDFKMEG--KVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIA----------- 176 (397)
T ss_pred e--cCceeecccccceEEEeecccceeeEEeecCc--eeehhhcChhhhcceEEEEecCCCcEEEEecc-----------
Confidence 5 66678899999999999999988877776544 36766664444456689999999999999999
Q ss_pred CCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCE-EEEEECCCeEEEEEcCCCcccCCCCceEeee
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~-LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~ 301 (1398)
++..-+.+.||.+.|.+|.|+|...+ |++|+.||.||+||++.... +.
T Consensus 177 ----------------------SGs~sH~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasg----cf----- 225 (397)
T KOG4283|consen 177 ----------------------SGSFSHTLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASG----CF----- 225 (397)
T ss_pred ----------------------CCcceeeeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccc----ee-----
Confidence 78888999999999999999998876 68999999999999976421 01
Q ss_pred eEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 302 ~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.+..|+.. ....+++-..|.++ |.+++|..++.++++.+.|..+++|+..
T Consensus 226 ~~lD~hn~k-------------------------~~p~~~~n~ah~gk-vngla~tSd~~~l~~~gtd~r~r~wn~~ 276 (397)
T KOG4283|consen 226 RVLDQHNTK-------------------------RPPILKTNTAHYGK-VNGLAWTSDARYLASCGTDDRIRVWNME 276 (397)
T ss_pred EEeecccCc-------------------------cCccccccccccce-eeeeeecccchhhhhccCccceEEeecc
Confidence 133333320 01122233457784 9999999999999999999999999983
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.76 E-value=1.7e-16 Score=176.90 Aligned_cols=286 Identities=12% Similarity=0.198 Sum_probs=211.2
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC--CeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t--g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
..++|++|.|+ |. ..+|++++ |++++||.+.. ...++.+. +...+|.+..|. |+|. ..++
T Consensus 212 s~~~I~sv~FH--p~----~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f~-------p~G~---~~i~ 274 (514)
T KOG2055|consen 212 SHGGITSVQFH--PT----APLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEFA-------PNGH---SVIF 274 (514)
T ss_pred CcCCceEEEec--CC----CceEEEecCCCcEEEEEecCccChhheeee-eccCccceeeec-------CCCc---eEEE
Confidence 35789999999 97 67776666 99999998753 34566665 355689999999 8882 4666
Q ss_pred EEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCC-cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE
Q 000602 93 LFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH-WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1398)
Q Consensus 93 ~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~-~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~ 170 (1398)
++| .+.+..||+.+.. ...+..+.++.. .+...+++| ++.+||..+..|.|.+....+++.+
T Consensus 275 ~s~rrky~ysyDle~ak-------------~~k~~~~~g~e~~~~e~FeVSh---d~~fia~~G~~G~I~lLhakT~eli 338 (514)
T KOG2055|consen 275 TSGRRKYLYSYDLETAK-------------VTKLKPPYGVEEKSMERFEVSH---DSNFIAIAGNNGHIHLLHAKTKELI 338 (514)
T ss_pred ecccceEEEEeeccccc-------------cccccCCCCcccchhheeEecC---CCCeEEEcccCceEEeehhhhhhhh
Confidence 665 6789999998643 344555555543 567788889 9999999999999999999999988
Q ss_pred EEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEE
Q 000602 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1398)
Q Consensus 171 ~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1398)
..++-.. .+..++| +.++..|++.+.+|+|.+||++ ...+++
T Consensus 339 ~s~KieG--~v~~~~f---sSdsk~l~~~~~~GeV~v~nl~---------------------------------~~~~~~ 380 (514)
T KOG2055|consen 339 TSFKIEG--VVSDFTF---SSDSKELLASGGTGEVYVWNLR---------------------------------QNSCLH 380 (514)
T ss_pred heeeecc--EEeeEEE---ecCCcEEEEEcCCceEEEEecC---------------------------------CcceEE
Confidence 8776443 3555565 4678899999999999999998 445555
Q ss_pred EEeCccCCE--EEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEe-
Q 000602 251 RLVGHEGSI--FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAG- 325 (1398)
Q Consensus 251 ~l~gH~~~I--~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs- 325 (1398)
++.. .+.| ++++.++++.+||+||+.|.|.|||..+... +...++++ .+..-...|.++.|++ +.|+.++
T Consensus 381 rf~D-~G~v~gts~~~S~ng~ylA~GS~~GiVNIYd~~s~~~--s~~PkPik--~~dNLtt~Itsl~Fn~d~qiLAiaS~ 455 (514)
T KOG2055|consen 381 RFVD-DGSVHGTSLCISLNGSYLATGSDSGIVNIYDGNSCFA--STNPKPIK--TVDNLTTAITSLQFNHDAQILAIASR 455 (514)
T ss_pred EEee-cCccceeeeeecCCCceEEeccCcceEEEeccchhhc--cCCCCchh--hhhhhheeeeeeeeCcchhhhhhhhh
Confidence 5542 2333 5577789999999999999999999765432 11123332 5556677899999983 5665555
Q ss_pred -CCCcEEEEcC-CCceEEEEecc---cCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 326 -EDCTCRVWGS-DGKQLKMIKEH---IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 326 -~Dg~i~vWd~-~g~~l~~l~~h---~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.+..+|+-.+ +-.....+... -+ .|+|++|+|.+.++|.|..+|.+.+|.+.
T Consensus 456 ~~knalrLVHvPS~TVFsNfP~~n~~vg-~vtc~aFSP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 456 VKKNALRLVHVPSCTVFSNFPTSNTKVG-HVTCMAFSPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred ccccceEEEeccceeeeccCCCCCCccc-ceEEEEecCCCceEEeecCCCceeeEeec
Confidence 4577888777 33333333222 23 48999999999999999999999999873
|
|
| >TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-15 Score=176.87 Aligned_cols=267 Identities=14% Similarity=0.134 Sum_probs=183.2
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCCC
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 36 ~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~~ 113 (1398)
.+++++. ++.|++||+.+++.+..+..+. .+.+++|+ |+++ .++++. .++.|++||...
T Consensus 2 ~~~~s~~~d~~v~~~d~~t~~~~~~~~~~~--~~~~l~~~-------~dg~---~l~~~~~~~~~v~~~d~~~------- 62 (300)
T TIGR03866 2 KAYVSNEKDNTISVIDTATLEVTRTFPVGQ--RPRGITLS-------KDGK---LLYVCASDSDTIQVIDLAT------- 62 (300)
T ss_pred cEEEEecCCCEEEEEECCCCceEEEEECCC--CCCceEEC-------CCCC---EEEEEECCCCeEEEEECCC-------
Confidence 4566665 8999999999999888887543 47789999 8872 344444 478999999875
Q ss_pred CCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE-ECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg-s~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d 192 (1398)
.+....+..+.. +..++|+| +++.++++ +.|+.|++||+.+++.+..+..+.. ...+.+ +++
T Consensus 63 --------~~~~~~~~~~~~-~~~~~~~~---~g~~l~~~~~~~~~l~~~d~~~~~~~~~~~~~~~--~~~~~~---~~d 125 (300)
T TIGR03866 63 --------GEVIGTLPSGPD-PELFALHP---NGKILYIANEDDNLVTVIDIETRKVLAEIPVGVE--PEGMAV---SPD 125 (300)
T ss_pred --------CcEEEeccCCCC-ccEEEECC---CCCEEEEEcCCCCeEEEEECCCCeEEeEeeCCCC--cceEEE---CCC
Confidence 233444444433 56788999 88877554 5689999999998887776653322 334555 688
Q ss_pred CcEEEEEECCC-eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEE
Q 000602 193 ALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1398)
Q Consensus 193 ~~~lasgs~dg-~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~L 271 (1398)
+.+++++..++ .+.+||.. +......+. ....+..++|+|++++|
T Consensus 126 g~~l~~~~~~~~~~~~~d~~---------------------------------~~~~~~~~~-~~~~~~~~~~s~dg~~l 171 (300)
T TIGR03866 126 GKIVVNTSETTNMAHFIDTK---------------------------------TYEIVDNVL-VDQRPRFAEFTADGKEL 171 (300)
T ss_pred CCEEEEEecCCCeEEEEeCC---------------------------------CCeEEEEEE-cCCCccEEEECCCCCEE
Confidence 99999888765 46677876 333333332 22345789999999988
Q ss_pred E-EEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCc--cEEEEEEc--CCEE-EEEeCCCcEEEEcC-CCceEEEEe
Q 000602 272 V-SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--RVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIK 344 (1398)
Q Consensus 272 a-S~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~--~V~~l~~s--~~~l-~sgs~Dg~i~vWd~-~g~~l~~l~ 344 (1398)
+ ++..++.|++||+.+++. ...+.......+.. ....++|+ ++++ ++.+.++.+.+||. +++.+..+.
T Consensus 172 ~~~~~~~~~v~i~d~~~~~~-----~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~~~~~ 246 (300)
T TIGR03866 172 WVSSEIGGTVSVIDVATRKV-----IKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVLDYLL 246 (300)
T ss_pred EEEcCCCCEEEEEEcCccee-----eeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEEEEEE
Confidence 5 445699999999998755 22111000000111 23457777 4554 44456778999999 666665553
Q ss_pred cccCccEEEEEEcCCCCEEEEE-EcCCcEEEEEcCC
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQA 379 (1398)
Q Consensus 345 ~h~~~~V~sl~~spdg~~latg-g~Dg~I~iwdl~~ 379 (1398)
+.. .+++++|+|+|++|+++ +.+|.|++||+..
T Consensus 247 -~~~-~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~ 280 (300)
T TIGR03866 247 -VGQ-RVWQLAFTPDEKYLLTTNGVSNDVSVIDVAA 280 (300)
T ss_pred -eCC-CcceEEECCCCCEEEEEcCCCCeEEEEECCC
Confidence 333 58999999999998876 4699999999954
|
Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol. |
| >KOG0269 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.6e-17 Score=195.21 Aligned_cols=247 Identities=18% Similarity=0.272 Sum_probs=184.8
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
....|... ++- ..|++.|...++||.+.... |.++..+..+..+. -.-.+.+|.|.. -+
T Consensus 41 ~~nAIs~n-------r~~----~qiv~AGrs~lklyai~~~~-----~~~~~~~~~k~kqn---~~~S~~DVkW~~--~~ 99 (839)
T KOG0269|consen 41 KANAISVN-------RDI----NQIVVAGRSLLKLYAINPND-----FSEKCNHRFKTKQN---KFYSAADVKWGQ--LY 99 (839)
T ss_pred ccceEeec-------CCc----ceeEEecccceeeEeeCccc-----CCcceeeecccccc---eeeehhhccccc--ch
Confidence 45556665 664 68889999999999997533 22222222111111 112355677764 26
Q ss_pred CcEEEEEECCCeEEEEEcCC---CeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCC
Q 000602 147 NRSLAIGCSDNSIRVWDISN---SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1398)
Q Consensus 147 g~~Latgs~Dg~V~vWd~~~---~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~ 223 (1398)
.++|||++..|.|.+||+.. .+.+..+..|++ .+.++.|+.. ...+|++|+.||.|++||++
T Consensus 100 ~NlIAT~s~nG~i~vWdlnk~~rnk~l~~f~EH~R-s~~~ldfh~t--ep~iliSGSQDg~vK~~DlR------------ 164 (839)
T KOG0269|consen 100 SNLIATCSTNGVISVWDLNKSIRNKLLTVFNEHER-SANKLDFHST--EPNILISGSQDGTVKCWDLR------------ 164 (839)
T ss_pred hhhheeecCCCcEEEEecCccccchhhhHhhhhcc-ceeeeeeccC--CccEEEecCCCceEEEEeee------------
Confidence 78999999999999999976 444555666665 4677888754 46799999999999999999
Q ss_pred CCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeee
Q 000602 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1398)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~ 302 (1398)
..+...++.+....|..|+|+| .+.+++++.+.|.+++||++.... .. .
T Consensus 165 ---------------------~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r-----~~----~ 214 (839)
T KOG0269|consen 165 ---------------------SKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDR-----CE----K 214 (839)
T ss_pred ---------------------cccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCchh-----HH----H
Confidence 4455666778899999999999 678899999999999999998755 12 3
Q ss_pred EEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcCC-CceEEEEecccCccEEEEEEcCCCC-EEEEEE--cCCcEEEEE
Q 000602 303 VLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGSD-GKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG--FDSAIKVHQ 376 (1398)
Q Consensus 303 ~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~~-g~~l~~l~~h~~~~V~sl~~spdg~-~latgg--~Dg~I~iwd 376 (1398)
.+..|.++|.|+.|+| .+|+|||.|++++|||.+ ++.-....-+...+|.++.|-|... .|++++ .|-.|+|||
T Consensus 215 k~~AH~GpV~c~nwhPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTiapv~rVkWRP~~~~hLAtcsmv~dtsV~VWD 294 (839)
T KOG0269|consen 215 KLTAHNGPVLCLNWHPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTIAPVGRVKWRPARSYHLATCSMVVDTSVHVWD 294 (839)
T ss_pred HhhcccCceEEEeecCCCceeeecCCCccEEEEeccCCCccceeEEeecceeeeeeeccCccchhhhhhccccceEEEEe
Confidence 7789999999999995 799999999999999994 4433334445555799999999876 466655 388999999
Q ss_pred cCC
Q 000602 377 FQA 379 (1398)
Q Consensus 377 l~~ 379 (1398)
++.
T Consensus 295 vrR 297 (839)
T KOG0269|consen 295 VRR 297 (839)
T ss_pred ecc
Confidence 964
|
|
| >KOG1963 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.5e-14 Score=174.00 Aligned_cols=481 Identities=12% Similarity=0.120 Sum_probs=273.2
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEE
Q 000602 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKL 101 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~v 101 (1398)
.-.|| +| .++++...+.+|.||...||.++..+..|.. ++.++.+.+. +.. ....+.++-+|.|++
T Consensus 21 ~avfS--nD----~k~l~~~~~~~V~VyS~~Tg~~i~~l~~~~a-~l~s~~~~~~-----~~~--~~~~~~~sl~G~I~v 86 (792)
T KOG1963|consen 21 PAVFS--ND----AKFLFLCTGNFVKVYSTATGECITSLEDHTA-PLTSVIVLPS-----SEN--ANYLIVCSLDGTIRV 86 (792)
T ss_pred ccccc--cC----CcEEEEeeCCEEEEEecchHhhhhhcccccC-ccceeeecCC-----Ccc--ceEEEEEecCccEEE
Confidence 34588 88 8999999999999999999999998887655 7999988833 111 113445555999999
Q ss_pred EEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec-----------CCCcEEEEEECCC--eEEEEEcCCC-
Q 000602 102 FELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC-----------NGNRSLAIGCSDN--SIRVWDISNS- 167 (1398)
Q Consensus 102 wdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~-----------~dg~~Latgs~Dg--~V~vWd~~~~- 167 (1398)
||... ..+++++..+ -+|..+.+.|.- .+...+.+++.+. +++-+.+.+-
T Consensus 87 wd~~~---------------~~Llkt~~~~-~~v~~~~~~~~~a~~s~~~~~s~~~~~~~~~~s~~~~~q~~~~~~~t~~ 150 (792)
T KOG1963|consen 87 WDWSD---------------GELLKTFDNN-LPVHALVYKPAQADISANVYVSVEDYSILTTFSKKLSKQSSRFVLATFD 150 (792)
T ss_pred ecCCC---------------cEEEEEEecC-CceeEEEechhHhCccceeEeecccceeeeecccccccceeeeEeeecc
Confidence 99985 3344444322 233444332200 0111111111111 1111111100
Q ss_pred -eEEEEEccC--CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 168 -SIILEVHSP--ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 168 -~~~~~l~~~--~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
.....+..+ ..++++ ++.+.. ..-..+..+.+|....+. .
T Consensus 151 ~~~~d~~~~~~~~~~I~~-------~~~ge~-~~i~~~~~~~~~~v~~~~--~--------------------------- 193 (792)
T KOG1963|consen 151 SAKGDFLKEHQEPKSIVD-------NNSGEF-KGIVHMCKIHIYFVPKHT--K--------------------------- 193 (792)
T ss_pred ccchhhhhhhcCCccEEE-------cCCceE-EEEEEeeeEEEEEecccc--e---------------------------
Confidence 000000011 122222 233433 333345567778776211 0
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEE
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~ 322 (1398)
.......-..|.-.+++.+++|+++++|++..||.|.+|.-..... +.... ..+.-|...|.+++|+ |.+|+
T Consensus 194 ~~~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI~vw~d~~~~~-~~~t~-----t~lHWH~~~V~~L~fS~~G~~Ll 267 (792)
T KOG1963|consen 194 HTSSRDITVHHTFNITCVALSPNERYLAAGDSDGRILVWRDFGSSD-DSETC-----TLLHWHHDEVNSLSFSSDGAYLL 267 (792)
T ss_pred eeccchhhhhhcccceeEEeccccceEEEeccCCcEEEEecccccc-ccccc-----eEEEecccccceeEEecCCceEe
Confidence 0000111234777799999999999999999999999997544211 01111 3777899999999998 79999
Q ss_pred EEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-CCcccccCCCccccccCCccE
Q 000602 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLESHPEAKEFNGRTEI 400 (1398)
Q Consensus 323 sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~~~~~~v~~~~~~~~ 400 (1398)
+||..|.+.+|.+ +++ ++|-..-+.+|..+.++||+.+.+....|+.|.+..... ....++.+-...
T Consensus 268 SGG~E~VLv~Wq~~T~~--kqfLPRLgs~I~~i~vS~ds~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~--------- 336 (792)
T KOG1963|consen 268 SGGREGVLVLWQLETGK--KQFLPRLGSPILHIVVSPDSDLYSLVLEDNQIHLIKASDLEIKSTISGIKPP--------- 336 (792)
T ss_pred ecccceEEEEEeecCCC--cccccccCCeeEEEEEcCCCCeEEEEecCceEEEEeccchhhhhhccCccCC---------
Confidence 9999999999999 555 444334344799999999999999999999999988732 222222221100
Q ss_pred EEeeeCCCccceeeccCCCCcEEEEEEec-CCeEEEEEcCCcEEEEEeecCCCceeEEEEee-cCCcc----EEEEeccC
Q 000602 401 FSIKIPNFSEQIRLTDSKSEYVRCLHLTS-EDTLYIATNHGYLYHTKLCDMDSVNWNKILQV-SEGMP----IICMDLLS 474 (1398)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~V~~lafs~-dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~-~~~~~----i~~l~~~~ 474 (1398)
.|.. -.....-.+.+++.| .+..+..+..|.+..|+++......--++... ..... +....+..
T Consensus 337 ----~~~~------k~~~~~l~t~~~idpr~~~~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~ 406 (792)
T KOG1963|consen 337 ----TPST------KTRPQSLTTGVSIDPRTNSLVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVAR 406 (792)
T ss_pred ----Cccc------cccccccceeEEEcCCCCceeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehh
Confidence 0000 001123345566666 34455556667777666665544321111111 11111 11111111
Q ss_pred CCCCCcCCCCcEEEEEe--------CCC--CEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCc-EEEEEcC
Q 000602 475 NEPKYPCGIDDWVALGD--------GKG--NMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR-FIFTADP 543 (1398)
Q Consensus 475 ~~~~~s~~~~~~la~gs--------~dG--~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~-~L~s~s~ 543 (1398)
.-.+.++++.. .|| .++.|.......... +..... .+++....+....++... ..++++.
T Consensus 407 ------~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~--L~T~I~-~PH~~~~vat~~~~~~rs~~~vta~~ 477 (792)
T KOG1963|consen 407 ------SRFGSWMATLEARIDKFNFFDGEVSLKFWQYNPNSKTFI--LNTKIN-NPHGNAFVATIFLNPTRSVRCVTASV 477 (792)
T ss_pred ------hccceEEEEeeeeehhhhccCceEEEEEEEEcCCcceeE--EEEEEe-cCCCceeEEEEEecCcccceeEEecc
Confidence 12256666643 233 577888765443222 222222 233333332222333333 7889999
Q ss_pred CCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCC
Q 000602 544 KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 544 dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~ 611 (1398)
||.+++|-+.+... .......+....+..| |..++++++||.||.+|++| .+++|.+||..+
T Consensus 478 dg~~KiW~~~~~~n--~~k~~s~W~c~~i~sy---~k~~i~a~~fs~dGslla~s-~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 478 DGDFKIWVFTDDSN--IYKKSSNWTCKAIGSY---HKTPITALCFSQDGSLLAVS-FDDTITIWDYDT 539 (792)
T ss_pred CCeEEEEEEecccc--cCcCccceEEeeeecc---ccCcccchhhcCCCcEEEEe-cCCEEEEecCCC
Confidence 99999999864322 1112233333333333 78889999999999888775 566999999887
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.74 E-value=2e-18 Score=201.08 Aligned_cols=250 Identities=16% Similarity=0.274 Sum_probs=200.3
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCC
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 36 ~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~ 113 (1398)
.+++.+. .-.++|||... +-.|.. .|.++... ..+ +.++.+| +..+-+|.+..
T Consensus 5 ~~~m~~~~~t~Lr~~~~~~------~~~hsa-av~~lk~~-------~s~----r~~~~Gg~~~k~~L~~i~k------- 59 (825)
T KOG0267|consen 5 EFLMKTKRATKLRVWDTRE------FVAHSA-AVGCLKIR-------KSS----RSLVTGGEDEKVNLWAIGK------- 59 (825)
T ss_pred cccceeeeeeccccccchh------hhhhhh-hhceeeee-------ccc----eeeccCCCceeeccccccC-------
Confidence 3444444 56788888643 222332 34444443 333 5666666 67777998864
Q ss_pred CCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCC
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA 193 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~ 193 (1398)
...+..+.+|..+|.++.|++ +..+|+.|+.+|+|++||++.++.++++.++... +.++.| .|-+
T Consensus 60 --------p~~i~S~~~hespIeSl~f~~---~E~LlaagsasgtiK~wDleeAk~vrtLtgh~~~-~~sv~f---~P~~ 124 (825)
T KOG0267|consen 60 --------PNAITSLTGHESPIESLTFDT---SERLLAAGSASGTIKVWDLEEAKIVRTLTGHLLN-ITSVDF---HPYG 124 (825)
T ss_pred --------CchhheeeccCCcceeeecCc---chhhhcccccCCceeeeehhhhhhhhhhhccccC-cceeee---ccce
Confidence 223345889999999999999 8899999999999999999999998888877643 456666 6778
Q ss_pred cEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE
Q 000602 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 194 ~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS 273 (1398)
.+.++|+.|+.+++||.+ ...+.+.+.+|...|..++|+|+|+++++
T Consensus 125 ~~~a~gStdtd~~iwD~R---------------------------------k~Gc~~~~~s~~~vv~~l~lsP~Gr~v~~ 171 (825)
T KOG0267|consen 125 EFFASGSTDTDLKIWDIR---------------------------------KKGCSHTYKSHTRVVDVLRLSPDGRWVAS 171 (825)
T ss_pred EEeccccccccceehhhh---------------------------------ccCceeeecCCcceeEEEeecCCCceeec
Confidence 899999999999999998 56678889999999999999999999999
Q ss_pred EECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCcc
Q 000602 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRG 350 (1398)
Q Consensus 274 ~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~ 350 (1398)
+++|.+++|||...++. .. .+.+|...+..+.|++ -++++|+.|+++++||+ +-+.+........ +
T Consensus 172 g~ed~tvki~d~~agk~-----~~-----ef~~~e~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~I~s~~~~~~-~ 240 (825)
T KOG0267|consen 172 GGEDNTVKIWDLTAGKL-----SK-----EFKSHEGKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEVISSGKPETD-G 240 (825)
T ss_pred cCCcceeeeeccccccc-----cc-----ccccccccccccccCchhhhhccCCCCceeeeeccceeEEeeccCCccC-C
Confidence 99999999999998876 22 7778999999999985 57889999999999999 4666666666655 6
Q ss_pred EEEEEEcCCCCEEEEEEcC
Q 000602 351 IWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 351 V~sl~~spdg~~latgg~D 369 (1398)
|.+.+|+|++..+++|..+
T Consensus 241 v~~~~fn~~~~~~~~G~q~ 259 (825)
T KOG0267|consen 241 VRSLAFNPDGKIVLSGEQI 259 (825)
T ss_pred ceeeeecCCceeeecCchh
Confidence 9999999999999888765
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=6.6e-16 Score=164.32 Aligned_cols=288 Identities=14% Similarity=0.167 Sum_probs=201.5
Q ss_pred eEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCe
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~ 98 (1398)
-+|+.|+ +- |.+||+|. +|.|.|||..|...-+.+..|-. +|.+++|| +||+ .+|.++.|..
T Consensus 26 a~~~~Fs--~~----G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~WS-------~dgr---~LltsS~D~s 88 (405)
T KOG1273|consen 26 AECCQFS--RW----GDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCWS-------RDGR---KLLTSSRDWS 88 (405)
T ss_pred cceEEec--cC----cceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEec-------CCCC---EeeeecCCce
Confidence 6899999 87 89999999 89999999999887777887776 89999999 9993 4555555999
Q ss_pred EEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCc
Q 000602 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1398)
Q Consensus 99 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~ 178 (1398)
|++||+.. +.+++.++ ...+|+.+.|+|. +.+..+..--+..-.+-++..+....--....+
T Consensus 89 i~lwDl~~---------------gs~l~rir-f~spv~~~q~hp~--k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~d~ 150 (405)
T KOG1273|consen 89 IKLWDLLK---------------GSPLKRIR-FDSPVWGAQWHPR--KRNKCVATIMEESPVVIDFSDPKHSVLPKDDDG 150 (405)
T ss_pred eEEEeccC---------------CCceeEEE-ccCccceeeeccc--cCCeEEEEEecCCcEEEEecCCceeeccCCCcc
Confidence 99999986 33444443 5689999999992 333333333344455556554322211112222
Q ss_pred ceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc-C
Q 000602 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-G 257 (1398)
Q Consensus 179 ~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~-~ 257 (1398)
..-.+..--.+.+.|+++++|+..|.+.++|.. +.+++..++--. .
T Consensus 151 dln~sas~~~fdr~g~yIitGtsKGkllv~~a~---------------------------------t~e~vas~rits~~ 197 (405)
T KOG1273|consen 151 DLNSSASHGVFDRRGKYIITGTSKGKLLVYDAE---------------------------------TLECVASFRITSVQ 197 (405)
T ss_pred ccccccccccccCCCCEEEEecCcceEEEEecc---------------------------------hheeeeeeeechhe
Confidence 222222101126789999999999999999998 556666665555 7
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC-CCCceEeeeeEEec--CCccEEEEEEc--CCEEEEEe-CCCcEE
Q 000602 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD-SDSIEEVGSSVLYG--HNARVWDCCLT--DSFIITAG-EDCTCR 331 (1398)
Q Consensus 258 ~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~-~~~~~~i~~~~~~g--h~~~V~~l~~s--~~~l~sgs-~Dg~i~ 331 (1398)
.|..+.|+..|++|+.-+.|+.||.|++..--... ...+++.. .+.. ....=.+++|+ +.+++.++ ....+.
T Consensus 198 ~IK~I~~s~~g~~liiNtsDRvIR~ye~~di~~~~r~~e~e~~~--K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLY 275 (405)
T KOG1273|consen 198 AIKQIIVSRKGRFLIINTSDRVIRTYEISDIDDEGRDGEVEPEH--KLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALY 275 (405)
T ss_pred eeeEEEEeccCcEEEEecCCceEEEEehhhhcccCccCCcChhH--HHHHHHhhhhhhheeecCCccEEEeccccceeEE
Confidence 89999999999999999999999999987421100 00011000 0000 01112456776 46666554 446799
Q ss_pred EEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
||.- .|..++.+.|..++....+.|+|-...+++- ..|.+++|...
T Consensus 276 IWE~~~GsLVKILhG~kgE~l~DV~whp~rp~i~si-~sg~v~iw~~~ 322 (405)
T KOG1273|consen 276 IWEKSIGSLVKILHGTKGEELLDVNWHPVRPIIASI-ASGVVYIWAVV 322 (405)
T ss_pred EEecCCcceeeeecCCchhheeecccccceeeeeec-cCCceEEEEee
Confidence 9999 8999999999997778889999998888877 78999999873
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.73 E-value=2.5e-16 Score=181.61 Aligned_cols=304 Identities=20% Similarity=0.258 Sum_probs=195.9
Q ss_pred EEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEE
Q 000602 184 MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1398)
Q Consensus 184 ~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~va 263 (1398)
..|..-......|+.+..||.|.++|....... .....+.....|...|+.+.
T Consensus 55 ~sFs~~~n~eHiLavadE~G~i~l~dt~~~~fr---------------------------~ee~~lk~~~aH~nAifDl~ 107 (720)
T KOG0321|consen 55 DSFSAAPNKEHILAVADEDGGIILFDTKSIVFR---------------------------LEERQLKKPLAHKNAIFDLK 107 (720)
T ss_pred ccccCCCCccceEEEecCCCceeeecchhhhcc---------------------------hhhhhhcccccccceeEeec
Confidence 344333455678999999999999998721111 02233455678999999999
Q ss_pred EcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC--CCc
Q 000602 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--DGK 338 (1398)
Q Consensus 264 fspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~--~g~ 338 (1398)
|.|....|++++.|.++++||+.+.++ ++...+.||+..|-+++|. +..|++|+.||.+.|||+ ++.
T Consensus 108 wapge~~lVsasGDsT~r~Wdvk~s~l--------~G~~~~~GH~~SvkS~cf~~~n~~vF~tGgRDg~illWD~R~n~~ 179 (720)
T KOG0321|consen 108 WAPGESLLVSASGDSTIRPWDVKTSRL--------VGGRLNLGHTGSVKSECFMPTNPAVFCTGGRDGEILLWDCRCNGV 179 (720)
T ss_pred cCCCceeEEEccCCceeeeeeecccee--------ecceeecccccccchhhhccCCCcceeeccCCCcEEEEEEeccch
Confidence 999667899999999999999999766 2213588999999999998 589999999999999998 330
Q ss_pred --------------------------eEEEEecccCccEEE---EEEcCCCCEEEEEEc-CCcEEEEEcCCCCcccccCC
Q 000602 339 --------------------------QLKMIKEHIGRGIWR---CLYDSLSSLLVTAGF-DSAIKVHQFQAFLPGSLESH 388 (1398)
Q Consensus 339 --------------------------~l~~l~~h~~~~V~s---l~~spdg~~latgg~-Dg~I~iwdl~~~~l~~l~~~ 388 (1398)
.+..-+.+.. .|.+ +.+..|...||++|. |+.|++||++...-..-.+.
T Consensus 180 d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~-ti~ssvTvv~fkDe~tlaSaga~D~~iKVWDLRk~~~~~r~ep 258 (720)
T KOG0321|consen 180 DALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASN-TIFSSVTVVLFKDESTLASAGAADSTIKVWDLRKNYTAYRQEP 258 (720)
T ss_pred hhHHHHhhhhhccccCCCCCCchhhccccccccccC-ceeeeeEEEEEeccceeeeccCCCcceEEEeecccccccccCC
Confidence 0111122333 3554 455567788999888 99999999953211000000
Q ss_pred CccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC-eEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccE
Q 000602 389 PEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1398)
Q Consensus 389 ~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg-~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i 467 (1398)
.... ..+.. ......+.++.....| .+++...|+.||.|++......- ...+.+.....+
T Consensus 259 ~~~~-----------~~~t~-------skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP-~~~~sg~~~~sf 319 (720)
T KOG0321|consen 259 RGSD-----------KYPTH-------SKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISP-VAEFSGKLNSSF 319 (720)
T ss_pred Cccc-----------CccCc-------ccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCc-hhhccCccccee
Confidence 0000 00000 1122345666666655 57777889999988775543311 111222211122
Q ss_pred EEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcE
Q 000602 468 ICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547 (1398)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I 547 (1398)
+.-.. -.+++.+|++|+.|+..++|.+.+...-+.+ ..++......+.|+.++.+..+.+ +.|-.+
T Consensus 320 ~vks~-------lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~------l~Ght~eVt~V~w~pS~~t~v~Tc-SdD~~~ 385 (720)
T KOG0321|consen 320 YVKSE-------LSPDDCSLLSGSSDEQAYIWVVSSPEAPPAL------LLGHTREVTTVRWLPSATTPVATC-SDDFRV 385 (720)
T ss_pred eeeee-------cCCCCceEeccCCCcceeeeeecCccCChhh------hhCcceEEEEEeeccccCCCceee-ccCcce
Confidence 11111 1478999999999999999999876543321 222233444445666766665555 999999
Q ss_pred EEEecCCCC
Q 000602 548 KLWQLCDPF 556 (1398)
Q Consensus 548 ~iWdi~~~~ 556 (1398)
++|++..+.
T Consensus 386 kiW~l~~~l 394 (720)
T KOG0321|consen 386 KIWRLSNGL 394 (720)
T ss_pred EEEeccCch
Confidence 999997653
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.73 E-value=1.8e-15 Score=173.67 Aligned_cols=272 Identities=18% Similarity=0.234 Sum_probs=209.3
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CC
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EK 97 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~ 97 (1398)
.|..++|- || |.-|+.+.|..+.|||...|.++.++++|++ .|.+++++ .|| ..+|+++ |+
T Consensus 14 ci~d~afk--PD----GsqL~lAAg~rlliyD~ndG~llqtLKgHKD-tVycVAys-------~dG----krFASG~aDK 75 (1081)
T KOG1538|consen 14 CINDIAFK--PD----GTQLILAAGSRLLVYDTSDGTLLQPLKGHKD-TVYCVAYA-------KDG----KRFASGSADK 75 (1081)
T ss_pred chheeEEC--CC----CceEEEecCCEEEEEeCCCcccccccccccc-eEEEEEEc-------cCC----ceeccCCCce
Confidence 78999999 99 6666666678899999999999999999987 79999999 888 6777776 99
Q ss_pred eEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC
Q 000602 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1398)
Q Consensus 98 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~ 177 (1398)
.|.+|.-..++ .+. + .|++.|.|+.|+| -...|++++- +..-+|..+.....+ .+...
T Consensus 76 ~VI~W~~klEG--------------~Lk--Y-SH~D~IQCMsFNP---~~h~LasCsL-sdFglWS~~qK~V~K-~kss~ 133 (1081)
T KOG1538|consen 76 SVIIWTSKLEG--------------ILK--Y-SHNDAIQCMSFNP---ITHQLASCSL-SDFGLWSPEQKSVSK-HKSSS 133 (1081)
T ss_pred eEEEecccccc--------------eee--e-ccCCeeeEeecCc---hHHHhhhcch-hhccccChhhhhHHh-hhhhe
Confidence 99999876432 221 2 5999999999999 7788998864 347788876543321 12222
Q ss_pred cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccC
Q 000602 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1398)
Q Consensus 178 ~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~ 257 (1398)
+ +.+..| ..||.+++-|-.+|+|.+-+-..+ ..-.+.+-.|...
T Consensus 134 R--~~~CsW---tnDGqylalG~~nGTIsiRNk~gE-------------------------------ek~~I~Rpgg~Ns 177 (1081)
T KOG1538|consen 134 R--IICCSW---TNDGQYLALGMFNGTISIRNKNGE-------------------------------EKVKIERPGGSNS 177 (1081)
T ss_pred e--EEEeee---cCCCcEEEEeccCceEEeecCCCC-------------------------------cceEEeCCCCCCC
Confidence 2 233333 578999999999999999865410 2223444456789
Q ss_pred CEEEEEEcCCC-----CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcE
Q 000602 258 SIFRIEWSSCG-----SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTC 330 (1398)
Q Consensus 258 ~I~~vafspdg-----~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i 330 (1398)
+|++|+|+|.. ..++......++.++.+..... . .-..-.....|+.+. |.+++.||.|+.+
T Consensus 178 piwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~I------g-----k~r~L~FdP~CisYf~NGEy~LiGGsdk~L 246 (1081)
T KOG1538|consen 178 PIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQI------G-----KDRALNFDPCCISYFTNGEYILLGGSDKQL 246 (1081)
T ss_pred CceEEEecCCCCCCccceEEEEeccceeEEEEecceee------c-----ccccCCCCchhheeccCCcEEEEccCCCce
Confidence 99999999954 4688888888888888865322 1 111223344567765 7899999999999
Q ss_pred EEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 331 RVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 331 ~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.+|..+|-.+.++..... -||.++..|++++++.|+.||+|..|++-
T Consensus 247 ~~fTR~GvrLGTvg~~D~-WIWtV~~~PNsQ~v~~GCqDGTiACyNl~ 293 (1081)
T KOG1538|consen 247 SLFTRDGVRLGTVGEQDS-WIWTVQAKPNSQYVVVGCQDGTIACYNLI 293 (1081)
T ss_pred EEEeecCeEEeeccccce-eEEEEEEccCCceEEEEEccCeeehhhhH
Confidence 999999998888877666 59999999999999999999999999984
|
|
| >KOG2055 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=6e-16 Score=172.60 Aligned_cols=289 Identities=12% Similarity=0.163 Sum_probs=210.1
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC--eEEEEEccCCcceEEEEEeecCCCCCc-EEEEEECCCeEEEE
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVW 208 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~--~~~~~l~~~~~~~~~s~~~~~~s~d~~-~lasgs~dg~I~vW 208 (1398)
.+.|++|.|+| ....|++|+.|++++||.++.. ..++.+. -.++.+.+..| .|+|. .+++++....++.|
T Consensus 213 ~~~I~sv~FHp---~~plllvaG~d~~lrifqvDGk~N~~lqS~~-l~~fPi~~a~f---~p~G~~~i~~s~rrky~ysy 285 (514)
T KOG2055|consen 213 HGGITSVQFHP---TAPLLLVAGLDGTLRIFQVDGKVNPKLQSIH-LEKFPIQKAEF---APNGHSVIFTSGRRKYLYSY 285 (514)
T ss_pred cCCceEEEecC---CCceEEEecCCCcEEEEEecCccChhheeee-eccCccceeee---cCCCceEEEecccceEEEEe
Confidence 46899999999 9999999999999999998642 3344433 23445666666 56777 89999999999999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc-CCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~-~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
|+.+.+ ...+..+.|++ ..+.....+|++++|+..+..|.|.|--..+
T Consensus 286 Dle~ak-------------------------------~~k~~~~~g~e~~~~e~FeVShd~~fia~~G~~G~I~lLhakT 334 (514)
T KOG2055|consen 286 DLETAK-------------------------------VTKLKPPYGVEEKSMERFEVSHDSNFIAIAGNNGHIHLLHAKT 334 (514)
T ss_pred eccccc-------------------------------cccccCCCCcccchhheeEecCCCCeEEEcccCceEEeehhhh
Confidence 998332 22344445554 4566778899999999999999999999888
Q ss_pred CcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEE
Q 000602 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~la 364 (1398)
+.. + .-..-.+.|.+++|+ +..|+..+.+|.|.+||+ ...++..+....+-.=++++.++++.|||
T Consensus 335 ~el-----i------~s~KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~~~~~rf~D~G~v~gts~~~S~ng~ylA 403 (514)
T KOG2055|consen 335 KEL-----I------TSFKIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQNSCLHRFVDDGSVHGTSLCISLNGSYLA 403 (514)
T ss_pred hhh-----h------heeeeccEEeeEEEecCCcEEEEEcCCceEEEEecCCcceEEEEeecCccceeeeeecCCCceEE
Confidence 766 2 333346778899997 688888899999999999 66778888766553446788889999999
Q ss_pred EEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcC---Cc
Q 000602 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH---GY 441 (1398)
Q Consensus 365 tgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~---g~ 441 (1398)
+|+..|.|.|||.+.... ...++++..++.-...|+.+.|+++.++|+.++. ..
T Consensus 404 ~GS~~GiVNIYd~~s~~~-----------------------s~~PkPik~~dNLtt~Itsl~Fn~d~qiLAiaS~~~kna 460 (514)
T KOG2055|consen 404 TGSDSGIVNIYDGNSCFA-----------------------STNPKPIKTVDNLTTAITSLQFNHDAQILAIASRVKKNA 460 (514)
T ss_pred eccCcceEEEeccchhhc-----------------------cCCCCchhhhhhhheeeeeeeeCcchhhhhhhhhccccc
Confidence 999999999999753211 1111222233333456999999999999887654 34
Q ss_pred EEEEEeecCCCce-eEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEc
Q 000602 442 LYHTKLCDMDSVN-WNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV 502 (1398)
Q Consensus 442 i~~~~l~~~~~~~-w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~ 502 (1398)
+.++.+....... |-. ....-..+.||++ +|.+.++|+|+++|.+.+|.+.
T Consensus 461 lrLVHvPS~TVFsNfP~--~n~~vg~vtc~aF--------SP~sG~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 461 LRLVHVPSCTVFSNFPT--SNTKVGHVTCMAF--------SPNSGYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred eEEEeccceeeeccCCC--CCCcccceEEEEe--------cCCCceEEeecCCCceeeEeec
Confidence 4444443322211 311 1222456788888 4668899999999999999875
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.1e-16 Score=176.30 Aligned_cols=292 Identities=17% Similarity=0.249 Sum_probs=213.4
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.+-|.+|... |. |.+||+|+ ||+|+||.+.||+++.+++. .+ .|.+|+|+ |.+. -.+||++
T Consensus 399 Htg~Vr~iSvd--p~----G~wlasGsdDGtvriWEi~TgRcvr~~~~-d~-~I~~vaw~-------P~~~--~~vLAvA 461 (733)
T KOG0650|consen 399 HTGLVRSISVD--PS----GEWLASGSDDGTVRIWEIATGRCVRTVQF-DS-EIRSVAWN-------PLSD--LCVLAVA 461 (733)
T ss_pred cCCeEEEEEec--CC----cceeeecCCCCcEEEEEeecceEEEEEee-cc-eeEEEEec-------CCCC--ceeEEEE
Confidence 88999999999 87 99999999 69999999999999999985 44 69999999 5542 2455555
Q ss_pred cCCeEEEEEecCCC-------------CCCCCCCCcccc---------cce-eeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 95 GEKRVKLFELNFEL-------------SPNSQYQPETCV---------NLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 95 gd~~V~vwdl~~~~-------------~~~~~~~~~~~~---------~~~-~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
-+..+.|.+...+. .+... .|+..+ .+. -+...-.|...|..+.|+- .|++|+
T Consensus 462 ~~~~~~ivnp~~G~~~e~~~t~ell~~~~~~~-~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHr---kGDYla 537 (733)
T KOG0650|consen 462 VGECVLIVNPIFGDRLEVGPTKELLASAPNES-EPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHR---KGDYLA 537 (733)
T ss_pred ecCceEEeCccccchhhhcchhhhhhcCCCcc-CCcccceeechhhhhhhccceEEEEecCCccceeeeec---CCceEE
Confidence 55556666654321 00000 111000 000 1222235788999999999 999999
Q ss_pred EEEC---CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCC
Q 000602 152 IGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 152 tgs~---Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
|... ...|.|.++.......-+. ..+..+..+.|++. ..+++.++ -..|++||+.
T Consensus 538 tV~~~~~~~~VliHQLSK~~sQ~PF~-kskG~vq~v~FHPs---~p~lfVaT-q~~vRiYdL~----------------- 595 (733)
T KOG0650|consen 538 TVMPDSGNKSVLIHQLSKRKSQSPFR-KSKGLVQRVKFHPS---KPYLFVAT-QRSVRIYDLS----------------- 595 (733)
T ss_pred EeccCCCcceEEEEecccccccCchh-hcCCceeEEEecCC---CceEEEEe-ccceEEEehh-----------------
Confidence 9754 4578899987655443332 22345667778654 34555555 3679999987
Q ss_pred CCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~ 308 (1398)
....+..+.....+|..++.+|.|..|+.++.|+.+..+|+.-.... .+ .+.-|.
T Consensus 596 ----------------kqelvKkL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldlsskP----yk-----~lr~H~ 650 (733)
T KOG0650|consen 596 ----------------KQELVKKLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDLSSKP----YK-----TLRLHE 650 (733)
T ss_pred ----------------HHHHHHHHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEcccCcch----hH-----Hhhhhh
Confidence 33444455556778999999999999999999999999999875431 33 777899
Q ss_pred ccEEEEEEcC--CEEEEEeCCCcEEEEcC---C----C---ceEEEEecccCc---cEEEEEEcCCCCEEEEEEcCCcEE
Q 000602 309 ARVWDCCLTD--SFIITAGEDCTCRVWGS---D----G---KQLKMIKEHIGR---GIWRCLYDSLSSLLVTAGFDSAIK 373 (1398)
Q Consensus 309 ~~V~~l~~s~--~~l~sgs~Dg~i~vWd~---~----g---~~l~~l~~h~~~---~V~sl~~spdg~~latgg~Dg~I~ 373 (1398)
..+.+++|++ .++++|+.||++.|+.- + . -+++.+++|... +|..+.|+|...||+++|.||+|+
T Consensus 651 ~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~qpWLfsAGAd~tir 730 (733)
T KOG0650|consen 651 KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQPWLFSAGADGTIR 730 (733)
T ss_pred hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCCceEEecCCCceEE
Confidence 9999999996 68999999999999863 1 1 246778888642 478888999999999999999999
Q ss_pred EE
Q 000602 374 VH 375 (1398)
Q Consensus 374 iw 375 (1398)
+|
T Consensus 731 lf 732 (733)
T KOG0650|consen 731 LF 732 (733)
T ss_pred ee
Confidence 98
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.72 E-value=3e-16 Score=170.86 Aligned_cols=251 Identities=17% Similarity=0.242 Sum_probs=177.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC----------------CeEEEEEEeeeCccEEEEEEecccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA----------------GTLIRPFQVFHGIRLHGISCNFINC 78 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t----------------g~~l~~~~~~~~~~V~~i~fs~~~~ 78 (1398)
|.+-++-+..++.++ ..+.|+=+ .|.|+|||+.. .+.+.++.+|.+ .=++++|||.
T Consensus 150 h~g~~NRvr~~~~~~----~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~-EGy~LdWSp~-- 222 (440)
T KOG0302|consen 150 HYGGINRVRVSRLGN----EVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKG-EGYGLDWSPI-- 222 (440)
T ss_pred cccccceeeecccCC----cceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCc-cceeeecccc--
Confidence 566677777773322 34444444 49999999842 356778888775 4689999932
Q ss_pred ccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccce-eeeecccCCCcEEEEEEEeecCCCcEEEEEECC
Q 000602 79 TEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLS-LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1398)
Q Consensus 79 ~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~-~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~D 156 (1398)
..| .|+++. -+.|++|...++. .+ -...+.+|+..|-+++||| .....||+|+.|
T Consensus 223 ---~~g-----~LlsGDc~~~I~lw~~~~g~-------------W~vd~~Pf~gH~~SVEDLqWSp--tE~~vfaScS~D 279 (440)
T KOG0302|consen 223 ---KTG-----RLLSGDCVKGIHLWEPSTGS-------------WKVDQRPFTGHTKSVEDLQWSP--TEDGVFASCSCD 279 (440)
T ss_pred ---ccc-----ccccCccccceEeeeeccCc-------------eeecCccccccccchhhhccCC--ccCceEEeeecC
Confidence 232 344333 5789999998633 22 2345678999999999999 345689999999
Q ss_pred CeEEEEEcCCCe---EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000602 157 NSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1398)
Q Consensus 157 g~V~vWd~~~~~---~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1398)
++|+|||++.+. ++.. +.+. .-+..+.| +.+..+||+|+.||+++|||++.-
T Consensus 280 gsIrIWDiRs~~~~~~~~~-kAh~-sDVNVISW---nr~~~lLasG~DdGt~~iwDLR~~-------------------- 334 (440)
T KOG0302|consen 280 GSIRIWDIRSGPKKAAVST-KAHN-SDVNVISW---NRREPLLASGGDDGTLSIWDLRQF-------------------- 334 (440)
T ss_pred ceEEEEEecCCCccceeEe-eccC-CceeeEEc---cCCcceeeecCCCceEEEEEhhhc--------------------
Confidence 999999999873 2332 3332 23444544 445559999999999999999821
Q ss_pred cceeeecccccceeEEEEEeCccCCEEEEEEcCC-CCEEEEEECCCeEEEEEcCCCccc------CCCCceEeeeeEEec
Q 000602 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWK------DSDSIEEVGSSVLYG 306 (1398)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd-g~~LaS~s~Dg~V~iWd~~~~~~~------~~~~~~~i~~~~~~g 306 (1398)
..++++..++-|..+|++|.|+|. ...|+.++.|..|.|||+.-..-. ....++.+.|+.++-
T Consensus 335 ----------~~~~pVA~fk~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE~D~ee~~~~a~~~L~dlPpQLLFV 404 (440)
T KOG0302|consen 335 ----------KSGQPVATFKYHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVEADEEEIDQEAAEGLQDLPPQLLFV 404 (440)
T ss_pred ----------cCCCcceeEEeccCCeeEEEeccccCceEEeccCCCcEEEEEeeccCChhhhccccccchhcCCceeEEE
Confidence 256789999999999999999994 467888889999999999854321 011133344456677
Q ss_pred CC--ccEEEEEEc---CCEEEEEeCCCcEE
Q 000602 307 HN--ARVWDCCLT---DSFIITAGEDCTCR 331 (1398)
Q Consensus 307 h~--~~V~~l~~s---~~~l~sgs~Dg~i~ 331 (1398)
|. ..+-.+.|+ |.++++.+.||...
T Consensus 405 HqGQke~KevhWH~QiPG~lvsTa~dGfnV 434 (440)
T KOG0302|consen 405 HQGQKEVKEVHWHRQIPGLLVSTAIDGFNV 434 (440)
T ss_pred ecchhHhhhheeccCCCCeEEEecccceeE
Confidence 74 467888998 68999999998543
|
|
| >KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.72 E-value=7.8e-18 Score=196.15 Aligned_cols=234 Identities=23% Similarity=0.357 Sum_probs=196.5
Q ss_pred ccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEE
Q 000602 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1398)
Q Consensus 129 ~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vW 208 (1398)
..|...|.++..-. .++.+++|+.|-.+-+|.+.....+..+.+++. .+-++.| +.+..+|++|+.+|+|++|
T Consensus 25 ~~hsaav~~lk~~~---s~r~~~~Gg~~~k~~L~~i~kp~~i~S~~~hes-pIeSl~f---~~~E~LlaagsasgtiK~w 97 (825)
T KOG0267|consen 25 VAHSAAVGCLKIRK---SSRSLVTGGEDEKVNLWAIGKPNAITSLTGHES-PIESLTF---DTSERLLAAGSASGTIKVW 97 (825)
T ss_pred hhhhhhhceeeeec---cceeeccCCCceeeccccccCCchhheeeccCC-cceeeec---CcchhhhcccccCCceeee
Confidence 36888888888765 788899999999999999987777766666654 4667777 6778899999999999999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCC
Q 000602 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1398)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~ 288 (1398)
|+. ..+.++++.||...+.+|.|+|-+.+.|+++.|+.+.+||.+..
T Consensus 98 Dle---------------------------------eAk~vrtLtgh~~~~~sv~f~P~~~~~a~gStdtd~~iwD~Rk~ 144 (825)
T KOG0267|consen 98 DLE---------------------------------EAKIVRTLTGHLLNITSVDFHPYGEFFASGSTDTDLKIWDIRKK 144 (825)
T ss_pred ehh---------------------------------hhhhhhhhhccccCcceeeeccceEEeccccccccceehhhhcc
Confidence 998 67778899999999999999999999999999999999999976
Q ss_pred cccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEE
Q 000602 289 YWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1398)
Q Consensus 289 ~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~lat 365 (1398)
.+ . ..+.+|...|..+.|+ |.+++++++|.+++|||+ .|+.+..|+.|.+ .|.++.|+|..-++++
T Consensus 145 Gc-----~-----~~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~agk~~~ef~~~e~-~v~sle~hp~e~Lla~ 213 (825)
T KOG0267|consen 145 GC-----S-----HTYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLTAGKLSKEFKSHEG-KVQSLEFHPLEVLLAP 213 (825)
T ss_pred Cc-----e-----eeecCCcceeEEEeecCCCceeeccCCcceeeeecccccccccccccccc-cccccccCchhhhhcc
Confidence 65 2 3677899999999998 579999999999999999 8999999999999 5999999999999999
Q ss_pred EEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcE
Q 000602 366 AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYL 442 (1398)
Q Consensus 366 gg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i 442 (1398)
||.|+++++||++.-. .+. ..+.....|++.+|.|++..+.++....+
T Consensus 214 Gs~d~tv~f~dletfe--------------------~I~---------s~~~~~~~v~~~~fn~~~~~~~~G~q~sl 261 (825)
T KOG0267|consen 214 GSSDRTVRFWDLETFE--------------------VIS---------SGKPETDGVRSLAFNPDGKIVLSGEQISL 261 (825)
T ss_pred CCCCceeeeeccceeE--------------------Eee---------ccCCccCCceeeeecCCceeeecCchhhh
Confidence 9999999999995211 000 11122357999999999988887755443
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.72 E-value=1.1e-15 Score=163.90 Aligned_cols=322 Identities=12% Similarity=0.162 Sum_probs=221.1
Q ss_pred eccceEEEEEEecCC-CCCCCCEEEEEeCCcEEEEECCCC---eEEEEEEee-eCccEEEEEEeccccccCCCCccceeE
Q 000602 16 YLGEISALCFVHLPS-HLSSLPFLLAGSGSQVLLYDLEAG---TLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 16 h~~~Vtalafs~~pd-~~~~g~lLaag~dg~I~Iwd~~tg---~~l~~~~~~-~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
|..+|.+++|. += +-..-+.+|+.++..+.||.+... +.++.+... +......++|+ ....++ +-+
T Consensus 37 ~~~~I~gv~fN--~~~~~~e~~vfatvG~~rvtiy~c~~d~~ir~lq~y~D~d~~Esfytcsw~----yd~~~~---~p~ 107 (385)
T KOG1034|consen 37 HNKPIFGVAFN--SFLGCDEPQVFATVGGNRVTIYECPGDGGIRLLQSYADEDHDESFYTCSWS----YDSNTG---NPF 107 (385)
T ss_pred CCCccceeeee--hhcCCCCCceEEEeCCcEEEEEEECCccceeeeeeccCCCCCcceEEEEEE----ecCCCC---Cee
Confidence 67889999998 41 011235666666789999998643 344444432 23456777777 222333 256
Q ss_pred EEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 91 la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
+|++| -|.|+|.|+.. .++...+.+|.+.|+.+.|.| .+.++|++++.|.+||+|++++..+
T Consensus 108 la~~G~~GvIrVid~~~---------------~~~~~~~~ghG~sINeik~~p--~~~qlvls~SkD~svRlwnI~~~~C 170 (385)
T KOG1034|consen 108 LAAGGYLGVIRVIDVVS---------------GQCSKNYRGHGGSINEIKFHP--DRPQLVLSASKDHSVRLWNIQTDVC 170 (385)
T ss_pred EEeecceeEEEEEecch---------------hhhccceeccCccchhhhcCC--CCCcEEEEecCCceEEEEeccCCeE
Confidence 77776 68999999985 567778899999999999999 2447899999999999999999999
Q ss_pred EEEEcc--CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCC--cceeeecccccc
Q 000602 170 ILEVHS--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD--FKCFKLQDQQHT 245 (1398)
Q Consensus 170 ~~~l~~--~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~--~~~i~i~~~~~~ 245 (1398)
+..+.+ .++..+.++.| +.++.+|++++.|.+|++|++...+...........++...... .....+.+
T Consensus 171 v~VfGG~egHrdeVLSvD~---~~~gd~i~ScGmDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~~~~fp~---- 243 (385)
T KOG1034|consen 171 VAVFGGVEGHRDEVLSVDF---SLDGDRIASCGMDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTPKTHFPD---- 243 (385)
T ss_pred EEEecccccccCcEEEEEE---cCCCCeeeccCCcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcccccccc----
Confidence 888763 34556888888 78899999999999999999984433222221122222222210 00011111
Q ss_pred eeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc-----CCC-CceEeeeeEEecCCccEEEEEEc--
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-----DSD-SIEEVGSSVLYGHNARVWDCCLT-- 317 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~-----~~~-~~~~i~~~~~~gh~~~V~~l~~s-- 317 (1398)
..+-.-|...|-++.|- |.+++|-|-++.|..|....-... .+. ....+ ..+.-....||-+.|.
T Consensus 244 ---fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~--~~~~~~~c~iWfirf~~d 316 (385)
T KOG1034|consen 244 ---FSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTIL--GEFDYPMCDIWFIRFAFD 316 (385)
T ss_pred ---ccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeee--eEeccCccceEEEEEeec
Confidence 11334588889888886 578999888999999998432211 000 01111 1334455678888886
Q ss_pred --CCEEEEEeCCCcEEEEcC-CCce--EEEEe-cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 318 --DSFIITAGEDCTCRVWGS-DGKQ--LKMIK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 318 --~~~l~sgs~Dg~i~vWd~-~g~~--l~~l~-~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.+.|+.|...|.+.+||+ ..++ ..++. ...+..|...+|+.|+.+|+....|++|.-||.
T Consensus 317 ~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdr 382 (385)
T KOG1034|consen 317 PWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDR 382 (385)
T ss_pred HHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEe
Confidence 489999999999999999 3322 22332 223446999999999999999999999999985
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.71 E-value=3.7e-15 Score=171.14 Aligned_cols=451 Identities=13% Similarity=0.184 Sum_probs=278.0
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
.|+.++|- ||| ..++...+..+.+||.+. +.+++++++|.+.|+|++|+. |
T Consensus 14 ci~d~afk-------PDG----sqL~lAAg~rlliyD~nd---------------G~llqtLKgHKDtVycVAys~---d 64 (1081)
T KOG1538|consen 14 CINDIAFK-------PDG----TQLILAAGSRLLVYDTSD---------------GTLLQPLKGHKDTVYCVAYAK---D 64 (1081)
T ss_pred chheeEEC-------CCC----ceEEEecCCEEEEEeCCC---------------cccccccccccceEEEEEEcc---C
Confidence 59999999 999 566666678899999985 668889999999999999999 9
Q ss_pred CcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCC
Q 000602 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1398)
Q Consensus 147 g~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1398)
|+++|+|+.|..|.+|...- -..++..+...+.+|.| +|-...+++++- ...-+|+...
T Consensus 65 GkrFASG~aDK~VI~W~~kl---EG~LkYSH~D~IQCMsF---NP~~h~LasCsL-sdFglWS~~q-------------- 123 (1081)
T KOG1538|consen 65 GKRFASGSADKSVIIWTSKL---EGILKYSHNDAIQCMSF---NPITHQLASCSL-SDFGLWSPEQ-------------- 123 (1081)
T ss_pred CceeccCCCceeEEEecccc---cceeeeccCCeeeEeec---CchHHHhhhcch-hhccccChhh--------------
Confidence 99999999999999998642 22334445556777776 666777777653 3455676651
Q ss_pred CCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEec
Q 000602 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1398)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~g 306 (1398)
+.+... .....|.+.+|..||++|+.|-.+|+|.|-+-..... .. + ...-|
T Consensus 124 --------------------K~V~K~-kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek-----~~-I--~Rpgg 174 (1081)
T KOG1538|consen 124 --------------------KSVSKH-KSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK-----VK-I--ERPGG 174 (1081)
T ss_pred --------------------hhHHhh-hhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc-----eE-E--eCCCC
Confidence 111111 1245688999999999999999999999986543322 11 1 13346
Q ss_pred CCccEEEEEEcC-------CEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 307 HNARVWDCCLTD-------SFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 307 h~~~V~~l~~s~-------~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
.+.+||+++|++ ..++......++..+.++|+.+..-+.-.-+ -.|+.+.++|.+++.||.|+.+++|.-+|
T Consensus 175 ~Nspiwsi~~~p~sg~G~~di~aV~DW~qTLSFy~LsG~~Igk~r~L~Fd-P~CisYf~NGEy~LiGGsdk~L~~fTR~G 253 (1081)
T KOG1538|consen 175 SNSPIWSICWNPSSGEGRNDILAVADWGQTLSFYQLSGKQIGKDRALNFD-PCCISYFTNGEYILLGGSDKQLSLFTRDG 253 (1081)
T ss_pred CCCCceEEEecCCCCCCccceEEEEeccceeEEEEecceeecccccCCCC-chhheeccCCcEEEEccCCCceEEEeecC
Confidence 788999999983 5788999999999999999887755444443 46899999999999999999999998765
Q ss_pred CCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE-EcCCcEEEEEeecCCCc-----
Q 000602 380 FLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSV----- 453 (1398)
Q Consensus 380 ~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~-t~~g~i~~~~l~~~~~~----- 453 (1398)
-.+.+.. ....+|..++..|+++.++. ..+|.+-.+++-....-
T Consensus 254 vrLGTvg------------------------------~~D~WIWtV~~~PNsQ~v~~GCqDGTiACyNl~fSTVH~ly~~ 303 (1081)
T KOG1538|consen 254 VRLGTVG------------------------------EQDSWIWTVQAKPNSQYVVVGCQDGTIACYNLIFSTVHGLYKD 303 (1081)
T ss_pred eEEeecc------------------------------ccceeEEEEEEccCCceEEEEEccCeeehhhhHHhHhhhhhHH
Confidence 4333221 23357889999999976654 57888776554221100
Q ss_pred e--eE----EE----EeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeee--eeecCcc
Q 000602 454 N--WN----KI----LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTF--TWSAGIE 521 (1398)
Q Consensus 454 ~--w~----~i----~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~--~~~~~~~ 521 (1398)
+ .+ .+ +.......|.|-|+...- +--.+.+|+--.+ .|.||.+.++...+. .... +....-.
T Consensus 304 RYA~R~sMtDVivQhLi~~qkvrIkC~DLVkKi----aiYrnrLAVQLpe-ki~iYel~se~~~~m-hY~v~ekI~kkf~ 377 (1081)
T KOG1538|consen 304 RYAYRDSMTDVIVQHLITEQKVRIKCKDLVKKI----AIYRNRLAVQLPE-KILIYELYSEDLSDM-HYRVKEKIIKKFE 377 (1081)
T ss_pred hhhhhhhhHHHHHHHHhhcceeeeeHHHHHHHH----Hhhhhhheecccc-eEEEEeccccccccc-hhHHHHHHHhhcc
Confidence 0 00 00 000112344443332210 0113345554433 788999887654331 0000 0000001
Q ss_pred cceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCC
Q 000602 522 RQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLR 601 (1398)
Q Consensus 522 ~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~d 601 (1398)
-.++. + .+.+++.+ .+..+..+|+..-.. +.+.+...-.|..--+++ +..+-|.+|-.+
T Consensus 378 cSLlV--V----c~~HiVlC-qekrLqClDF~Gvk~-------ReW~M~S~iRYikV~GGP-------~gREgL~vGlkn 436 (1081)
T KOG1538|consen 378 CSLLV--V----CANHIVLC-QEKRLQCLDFSGVKE-------REWQMESLIRYIKVIGGP-------PGREGLLVGLKN 436 (1081)
T ss_pred ceEEE--E----EcCeEEEE-cccceeeecccchhh-------hhhhHHHHHHhhhhhcCC-------CCcceeEEEecC
Confidence 11111 1 12334333 566777787764321 222222111111100110 223578899999
Q ss_pred CeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEEecCC
Q 000602 602 GNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDR 673 (1398)
Q Consensus 602 GtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~~~~~ 673 (1398)
|.|+---+++. + |+-.. ..+|.|.+..-..+...|++.-..++..++|+.+++
T Consensus 437 GqV~kiF~dN~------------~-PiLl~------~~~tAvrClDINA~R~kLAvVDD~~~c~v~DI~t~e 489 (1081)
T KOG1538|consen 437 GQVLKIFVDNL------------F-PILLL------KQATAVRCLDINASRKKLAVVDDNDTCLVYDIDTKE 489 (1081)
T ss_pred CcEEEEEecCC------------c-hhhee------cccceeEEeeccCCcceEEEEccCCeEEEEEccCCc
Confidence 98763333331 1 22211 234444444333456778888888888888998874
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.71 E-value=9e-16 Score=170.87 Aligned_cols=242 Identities=15% Similarity=0.226 Sum_probs=173.8
Q ss_pred eEEEEEc-CCeEEEEEecCCCCCCCCCCC------cccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEE
Q 000602 89 FEVALFG-EKRVKLFELNFELSPNSQYQP------ETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1398)
Q Consensus 89 ~~la~~g-d~~V~vwdl~~~~~~~~~~~~------~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~v 161 (1398)
+++|++. +..|.|||+.....-.-.+.- ......+.-....+|++.|.++.|+- .-...||+|+.|.+|++
T Consensus 193 NyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~--~~~nVLaSgsaD~TV~l 270 (463)
T KOG0270|consen 193 NYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNR--NFRNVLASGSADKTVKL 270 (463)
T ss_pred ceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhcc--ccceeEEecCCCceEEE
Confidence 6888877 899999999853210000000 00001112223457999999999986 24568999999999999
Q ss_pred EEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
||+.++++...+.. ++..+.++.|++. ...+|++|+.|+++.+.|.+...
T Consensus 271 WD~~~g~p~~s~~~-~~k~Vq~l~wh~~--~p~~LLsGs~D~~V~l~D~R~~~--------------------------- 320 (463)
T KOG0270|consen 271 WDVDTGKPKSSITH-HGKKVQTLEWHPY--EPSVLLSGSYDGTVALKDCRDPS--------------------------- 320 (463)
T ss_pred EEcCCCCcceehhh-cCCceeEEEecCC--CceEEEeccccceEEeeeccCcc---------------------------
Confidence 99999999888874 4456888888755 56899999999999999998100
Q ss_pred cccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---
Q 000602 242 QQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--- 317 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--- 317 (1398)
..+... .-.+.|-.++|.|.. ..++++.+||+|+-+|++..... + ..+..|...|.+++++
T Consensus 321 --~s~~~w----k~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~----v-----wt~~AHd~~ISgl~~n~~~ 385 (463)
T KOG0270|consen 321 --NSGKEW----KFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKP----V-----WTLKAHDDEISGLSVNIQT 385 (463)
T ss_pred --ccCceE----EeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCc----e-----eEEEeccCCcceEEecCCC
Confidence 011111 135778999999965 45777889999999999986431 2 4888999999999998
Q ss_pred CCEEEEEeCCCcEEEEcCCCceEEEEecc---cCccEEEEEEcCCCC-EEEEEEcCCcEEEEEcC
Q 000602 318 DSFIITAGEDCTCRVWGSDGKQLKMIKEH---IGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 318 ~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h---~~~~V~sl~~spdg~-~latgg~Dg~I~iwdl~ 378 (1398)
+++++|++.|+++++|++.+..-.....| -+ ...|.++.|+-. +++.||..+.+++||+.
T Consensus 386 p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~~~~-rl~c~~~~~~~a~~la~GG~k~~~~vwd~~ 449 (463)
T KOG0270|consen 386 PGLLSTASTDKVVKLWKFDVDSPKSVKEHSFKLG-RLHCFALDPDVAFTLAFGGEKAVLRVWDIF 449 (463)
T ss_pred CcceeeccccceEEEEeecCCCCccccccccccc-ceeecccCCCcceEEEecCccceEEEeecc
Confidence 68999999999999999943222222222 23 255667777654 67888888899999983
|
|
| >KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.7e-15 Score=162.48 Aligned_cols=308 Identities=17% Similarity=0.237 Sum_probs=217.3
Q ss_pred EEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeec--ccCCCcEE
Q 000602 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVF 136 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~ 136 (1398)
.++..+..+|.+++|+.-.-... ...+|+.|.+++.+|....+. ....++.+ ..|.....
T Consensus 32 ~l~ed~~~~I~gv~fN~~~~~~e------~~vfatvG~~rvtiy~c~~d~------------~ir~lq~y~D~d~~Esfy 93 (385)
T KOG1034|consen 32 HLKEDHNKPIFGVAFNSFLGCDE------PQVFATVGGNRVTIYECPGDG------------GIRLLQSYADEDHDESFY 93 (385)
T ss_pred ehhccCCCccceeeeehhcCCCC------CceEEEeCCcEEEEEEECCcc------------ceeeeeeccCCCCCcceE
Confidence 33333445899999983321111 368999999999999987532 12333333 24667788
Q ss_pred EEEEEeecCC-CcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCc
Q 000602 137 DVCFLKVCNG-NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (1398)
Q Consensus 137 ~v~fsp~~~d-g~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~ 215 (1398)
.++|+-...+ ..+||.|+.-|.|+|.|+.+++....+.++... +..+.+++. +.++|++++.|..|++|+++
T Consensus 94 tcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~s-INeik~~p~--~~qlvls~SkD~svRlwnI~---- 166 (385)
T KOG1034|consen 94 TCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGS-INEIKFHPD--RPQLVLSASKDHSVRLWNIQ---- 166 (385)
T ss_pred EEEEEecCCCCCeeEEeecceeEEEEEecchhhhccceeccCcc-chhhhcCCC--CCcEEEEecCCceEEEEecc----
Confidence 8999863322 458899999999999999999998888776543 556677544 45799999999999999999
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE---eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc-
Q 000602 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK- 291 (1398)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l---~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~- 291 (1398)
+..++..+ .||.+.|.++.|+++|.+++|++.|.++++|++...+..
T Consensus 167 -----------------------------~~~Cv~VfGG~egHrdeVLSvD~~~~gd~i~ScGmDhslk~W~l~~~~f~~ 217 (385)
T KOG1034|consen 167 -----------------------------TDVCVAVFGGVEGHRDEVLSVDFSLDGDRIASCGMDHSLKLWRLNVKEFKN 217 (385)
T ss_pred -----------------------------CCeEEEEecccccccCcEEEEEEcCCCCeeeccCCcceEEEEecChhHHhh
Confidence 55666554 579999999999999999999999999999999854322
Q ss_pred ---------CCCCceEe------ee--eEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-C-C-------------ce
Q 000602 292 ---------DSDSIEEV------GS--SVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-D-G-------------KQ 339 (1398)
Q Consensus 292 ---------~~~~~~~i------~~--~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~-g-------------~~ 339 (1398)
+.....++ -| .+..-|...|-|+.|-++++++-+-++.|..|.. . + ..
T Consensus 218 ~lE~s~~~~~~~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti 297 (385)
T KOG1034|consen 218 KLELSITYSPNKTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFGDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTI 297 (385)
T ss_pred hhhhhcccCCCCccCcCCccccccccccccccccchHHHHHHHhhheeecccCceEEEEecchhhhhhhccCCCccceee
Confidence 00000000 00 1334588888899999999999999999999986 1 1 12
Q ss_pred EEEEecccCccEEEEEE--cCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccC
Q 000602 340 LKMIKEHIGRGIWRCLY--DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS 417 (1398)
Q Consensus 340 l~~l~~h~~~~V~sl~~--spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (1398)
+..+..... .||-+.| +|-+++||.|...|.|.+||++........ ...-..
T Consensus 298 ~~~~~~~~c-~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~t-------------------------tl~~s~ 351 (385)
T KOG1034|consen 298 LGEFDYPMC-DIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCT-------------------------TLTHSK 351 (385)
T ss_pred eeEeccCcc-ceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCc-------------------------eEEecc
Confidence 344555555 4888765 566889999999999999999643211000 000011
Q ss_pred CCCcEEEEEEecCCeEEEE-EcCCcEEEEE
Q 000602 418 KSEYVRCLHLTSEDTLYIA-TNHGYLYHTK 446 (1398)
Q Consensus 418 ~~~~V~~lafs~dg~llv~-t~~g~i~~~~ 446 (1398)
....|+..+|+.|+.+++. +.++.+.+|+
T Consensus 352 ~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwd 381 (385)
T KOG1034|consen 352 SGSTVRQTSFSRDGSILVLVCDDGTVWRWD 381 (385)
T ss_pred ccceeeeeeecccCcEEEEEeCCCcEEEEE
Confidence 2357999999999976654 5677766543
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.4e-15 Score=169.60 Aligned_cols=294 Identities=16% Similarity=0.215 Sum_probs=205.3
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC----eEEEEEEeeeCccEEEEEEeccccccCCCCccceeE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg----~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
+.++|++++|+ |. -..+++|+|. .|+|-+||+.+. .-+..+..|.. +|.+|.|+ |... +.+
T Consensus 185 ~~~Rit~l~fH--Pt--~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~-~Vs~l~F~-------P~n~--s~i 250 (498)
T KOG4328|consen 185 TDRRITSLAFH--PT--ENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSG-PVSGLKFS-------PANT--SQI 250 (498)
T ss_pred cccceEEEEec--cc--CcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCc-cccceEec-------CCCh--hhe
Confidence 67899999999 87 3347889998 799999999532 22344554444 89999999 5431 366
Q ss_pred EEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE-
Q 000602 91 VALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1398)
Q Consensus 91 la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~- 169 (1398)
++++-||+|++-|++..- .+.+..+.....++.++.|+. +...++.|..=|...+||++++..
T Consensus 251 ~ssSyDGtiR~~D~~~~i-------------~e~v~s~~~d~~~fs~~d~~~---e~~~vl~~~~~G~f~~iD~R~~~s~ 314 (498)
T KOG4328|consen 251 YSSSYDGTIRLQDFEGNI-------------SEEVLSLDTDNIWFSSLDFSA---ESRSVLFGDNVGNFNVIDLRTDGSE 314 (498)
T ss_pred eeeccCceeeeeeecchh-------------hHHHhhcCccceeeeeccccC---CCccEEEeecccceEEEEeecCCcc
Confidence 777779999999998532 344445544556788888987 666677787777999999987654
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
...+..+.. -+.++++.+- ...++++++.|++.+|||++. .+....++
T Consensus 315 ~~~~~lh~k-KI~sv~~NP~--~p~~laT~s~D~T~kIWD~R~-----------------------------l~~K~sp~ 362 (498)
T KOG4328|consen 315 YENLRLHKK-KITSVALNPV--CPWFLATASLDQTAKIWDLRQ-----------------------------LRGKASPF 362 (498)
T ss_pred chhhhhhhc-ccceeecCCC--CchheeecccCcceeeeehhh-----------------------------hcCCCCcc
Confidence 444444444 4667776432 456899999999999999981 11112234
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCc------cEEEEEEcC--CEE
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA------RVWDCCLTD--SFI 321 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~------~V~~l~~s~--~~l 321 (1398)
.....|...|.++.|||++..|++.+.|..|||||..--... ..+. ....|.. ...-..|.+ ++|
T Consensus 363 lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~----~~p~---~~I~Hn~~t~RwlT~fKA~W~P~~~li 435 (498)
T KOG4328|consen 363 LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAK----DEPL---GTIPHNNRTGRWLTPFKAAWDPDYNLI 435 (498)
T ss_pred eecccccceeeeeEEcCCCCceEeeccCCceEEeeccccccc----CCcc---ceeeccCcccccccchhheeCCCccEE
Confidence 555679999999999999988999999999999998511100 1111 1122221 123455664 788
Q ss_pred EEEeCCCcEEEEcCCC-ceEEEEecccCccEEEE-EEcCCCC-EEEEEEcCCcEEEEEcC
Q 000602 322 ITAGEDCTCRVWGSDG-KQLKMIKEHIGRGIWRC-LYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 322 ~sgs~Dg~i~vWd~~g-~~l~~l~~h~~~~V~sl-~~spdg~-~latgg~Dg~I~iwdl~ 378 (1398)
+.|-.-..|-|+|.++ +.+..+.......|.++ .|+|-+. +++-++..|.|.||.-+
T Consensus 436 ~vg~~~r~IDv~~~~~~q~v~el~~P~~~tI~~vn~~HP~~~~~~aG~~s~Gki~vft~k 495 (498)
T KOG4328|consen 436 VVGRYPRPIDVFDGNGGQMVCELHDPESSTIPSVNEFHPMRDTLAAGGNSSGKIYVFTNK 495 (498)
T ss_pred EEeccCcceeEEcCCCCEEeeeccCccccccccceeecccccceeccCCccceEEEEecC
Confidence 9998888999999954 44667665555456664 6999888 55555568888888654
|
|
| >KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.1e-15 Score=176.42 Aligned_cols=271 Identities=17% Similarity=0.209 Sum_probs=188.5
Q ss_pred CCCcEEEEeCCcCe-------------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEE--EEeeeC
Q 000602 2 GKKDLSEWRLDVGQ-------------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRP--FQVFHG 65 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~-------------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~--~~~~~~ 65 (1398)
+||-|.++|..+.+ |-..|..+++. |. ...|++.+ |.++++||+++++++.. +.+|.+
T Consensus 72 E~G~i~l~dt~~~~fr~ee~~lk~~~aH~nAifDl~wa--pg----e~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~ 145 (720)
T KOG0321|consen 72 EDGGIILFDTKSIVFRLEERQLKKPLAHKNAIFDLKWA--PG----ESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTG 145 (720)
T ss_pred CCCceeeecchhhhcchhhhhhcccccccceeEeeccC--CC----ceeEEEccCCceeeeeeeccceeecceeeccccc
Confidence 57888898866543 66779999999 75 55666655 79999999999999877 788877
Q ss_pred ccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCC--------------CCCCCCCCcccccceeeeeccc
Q 000602 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFEL--------------SPNSQYQPETCVNLSLVQSLPR 130 (1398)
Q Consensus 66 ~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~--------------~~~~~~~~~~~~~~~~~~~l~~ 130 (1398)
.|.+++|. |.. ...++++| |+.|.|||+.-.. .++.+ .| .....+.++.-+.
T Consensus 146 -SvkS~cf~-------~~n---~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~p-tp-skp~~kr~~k~kA 212 (720)
T KOG0321|consen 146 -SVKSECFM-------PTN---PAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAP-TP-SKPLKKRIRKWKA 212 (720)
T ss_pred -ccchhhhc-------cCC---CcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCC-CC-Cchhhcccccccc
Confidence 79999999 554 25666666 9999999997322 00000 00 0111233444455
Q ss_pred CCCcEEE---EEEEeecCCCcEEEEEEC-CCeEEEEEcCCCeEEEEEc--------cCCcceEEEEEeecCCCCCcEEEE
Q 000602 131 LSHWVFD---VCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVH--------SPERCLLYSMKLWGDNLEALRIAS 198 (1398)
Q Consensus 131 h~~~V~~---v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~~~~~~l~--------~~~~~~~~s~~~~~~s~d~~~las 198 (1398)
|...|.+ +-+.. |...||+++. |+.|+|||+++........ .+.....--+.+.. +..|.+|.+
T Consensus 213 ~s~ti~ssvTvv~fk---De~tlaSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~l-DssGt~L~A 288 (720)
T KOG0321|consen 213 ASNTIFSSVTVVLFK---DESTLASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLIL-DSSGTYLFA 288 (720)
T ss_pred ccCceeeeeEEEEEe---ccceeeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEe-cCCCCeEEE
Confidence 6666665 55555 8889999888 9999999998765543322 22111111122221 345688888
Q ss_pred EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEE--EEEcCCCCEEEEEEC
Q 000602 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR--IEWSSCGSKLVSVSD 276 (1398)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~--vafspdg~~LaS~s~ 276 (1398)
.+.|+.|+.|++.... ..++..+.++...-+- -..+||+.+++||+.
T Consensus 289 sCtD~sIy~ynm~s~s-------------------------------~sP~~~~sg~~~~sf~vks~lSpd~~~l~SgSs 337 (720)
T KOG0321|consen 289 SCTDNSIYFYNMRSLS-------------------------------ISPVAEFSGKLNSSFYVKSELSPDDCSLLSGSS 337 (720)
T ss_pred EecCCcEEEEeccccC-------------------------------cCchhhccCcccceeeeeeecCCCCceEeccCC
Confidence 8889999999998322 2233444444322222 236899999999999
Q ss_pred CCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcC
Q 000602 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 277 Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~ 335 (1398)
|..+.+|.+...... . ..+.||...|++++|.+ .-++|+++|.+++||++
T Consensus 338 d~~ayiw~vs~~e~~----~-----~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l 390 (720)
T KOG0321|consen 338 DEQAYIWVVSSPEAP----P-----ALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRL 390 (720)
T ss_pred CcceeeeeecCccCC----h-----hhhhCcceEEEEEeeccccCCCceeeccCcceEEEec
Confidence 999999999886551 1 47889999999999984 57889999999999998
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.1e-15 Score=170.81 Aligned_cols=293 Identities=13% Similarity=0.150 Sum_probs=205.3
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeee-CccEEEEEEeccccccCCCCccceeEEEE--EcCCeEEEEEecCCCCCCC
Q 000602 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNS 112 (1398)
Q Consensus 36 ~lLaag~dg~I~Iwd~~tg~~l~~~~~~~-~~~V~~i~fs~~~~~~~pdg~~~~~~la~--~gd~~V~vwdl~~~~~~~~ 112 (1398)
.+.++.++..++|||....+....+..+. ...+..+.|+ ... .+++. +||+.+++|.-.... +
T Consensus 4 Nl~~aS~gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~-------~~n----~lvvas~~gdk~~~~~~K~g~~--~- 69 (673)
T KOG4378|consen 4 NLHVASTGDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ-------RRN----FLVVASMAGDKVMRIKEKDGKT--P- 69 (673)
T ss_pred ceeeeccCCceEEeecccccCccccccCCCCCcceeeecc-------ccc----eEEEeecCCceeEEEecccCCC--C-
Confidence 36666677899999998765544444322 1247888887 432 23222 348899999765321 0
Q ss_pred CCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC
Q 000602 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d 192 (1398)
....+..+.+. .-.|++... ...++++|+..+.|+|||++...+.+.++.|. ..+..+.+ +..
T Consensus 70 --------~Vp~~~k~~gd--~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl~hr~lkdh~-stvt~v~Y---N~~ 132 (673)
T KOG4378|consen 70 --------EVPRVRKLTGD--NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKLIHRFLKDHQ-STVTYVDY---NNT 132 (673)
T ss_pred --------ccceeeccccc--hHHHHhhhh---cceeeeccCcCceeeehhhHHHHHhhhccCCc-ceeEEEEe---cCC
Confidence 02233333333 334444444 44689999999999999999766667777776 45556666 566
Q ss_pred CcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc-cCCEEEEEEcCCCCE-
Q 000602 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH-EGSIFRIEWSSCGSK- 270 (1398)
Q Consensus 193 ~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH-~~~I~~vafspdg~~- 270 (1398)
..+||+++..|.|.|..+. ++.....+.-. ...|.-+.|+|..++
T Consensus 133 DeyiAsvs~gGdiiih~~~---------------------------------t~~~tt~f~~~sgqsvRll~ys~skr~l 179 (673)
T KOG4378|consen 133 DEYIASVSDGGDIIIHGTK---------------------------------TKQKTTTFTIDSGQSVRLLRYSPSKRFL 179 (673)
T ss_pred cceeEEeccCCcEEEEecc---------------------------------cCccccceecCCCCeEEEeeccccccee
Confidence 7899999999999999988 23333333322 345668899997765
Q ss_pred EEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC-CCceEEEEecc
Q 000602 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1398)
Q Consensus 271 LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h 346 (1398)
|.+++++|.|.+||+..... +. .....|.++...++|+ +.+|++-|.|+.|.+||. ..+....+...
T Consensus 180 L~~asd~G~VtlwDv~g~sp-----~~----~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~l~y~ 250 (673)
T KOG4378|consen 180 LSIASDKGAVTLWDVQGMSP-----IF----HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDRLTYS 250 (673)
T ss_pred eEeeccCCeEEEEeccCCCc-----cc----chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccceeeec
Confidence 56799999999999987654 11 2556799999999998 478999999999999999 44444444433
Q ss_pred cCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEE
Q 000602 347 IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLH 426 (1398)
Q Consensus 347 ~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~la 426 (1398)
. +..+++|.++|.+|+.|...|.|..||+++.. .++.....|...|++++
T Consensus 251 -~-Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k----------------------------~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 251 -H-PLSTVAFSECGTYLCAGNSKGELIAYDMRSTK----------------------------APVAVRSAHDASVTRVA 300 (673)
T ss_pred -C-CcceeeecCCceEEEeecCCceEEEEecccCC----------------------------CCceEeeecccceeEEE
Confidence 2 68999999999999999999999999996421 11222334666799999
Q ss_pred EecCC
Q 000602 427 LTSED 431 (1398)
Q Consensus 427 fs~dg 431 (1398)
|-+..
T Consensus 301 fq~s~ 305 (673)
T KOG4378|consen 301 FQPSP 305 (673)
T ss_pred eeecc
Confidence 98764
|
|
| >KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.69 E-value=1.3e-15 Score=170.34 Aligned_cols=280 Identities=11% Similarity=0.087 Sum_probs=202.6
Q ss_pred CCcEEEEeCCcCe-------ec--cceEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeE--EEEEEeeeCccEE
Q 000602 3 KKDLSEWRLDVGQ-------YL--GEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTL--IRPFQVFHGIRLH 69 (1398)
Q Consensus 3 D~tv~iWdl~~~~-------h~--~~Vtalafs~~pd~~~~g~lLaag~--dg~I~Iwd~~tg~~--l~~~~~~~~~~V~ 69 (1398)
..++++||+.... |. -.+..+.|+ .. .-++++.. |..+++|.- .|+. +.......+..-.
T Consensus 11 gd~~kl~D~s~~~~~~~~~~~t~~pg~~s~~w~--~~----n~lvvas~~gdk~~~~~~K-~g~~~~Vp~~~k~~gd~~~ 83 (673)
T KOG4378|consen 11 GDKTKLSDFSDLETKSEYVHQTAEPGDFSFNWQ--RR----NFLVVASMAGDKVMRIKEK-DGKTPEVPRVRKLTGDNAF 83 (673)
T ss_pred CCceEEeecccccCccccccCCCCCcceeeecc--cc----ceEEEeecCCceeEEEecc-cCCCCccceeeccccchHH
Confidence 4569999987654 22 228899998 43 22333333 578888873 3331 1111111222223
Q ss_pred EEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCc
Q 000602 70 GISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNR 148 (1398)
Q Consensus 70 ~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~ 148 (1398)
|++.. ... .+++++| .+.|+|||+.. ....+.+++|++.|++|.++- ...
T Consensus 84 Cv~~~-------s~S----~y~~sgG~~~~Vkiwdl~~---------------kl~hr~lkdh~stvt~v~YN~---~De 134 (673)
T KOG4378|consen 84 CVACA-------SQS----LYEISGGQSGCVKIWDLRA---------------KLIHRFLKDHQSTVTYVDYNN---TDE 134 (673)
T ss_pred HHhhh-------hcc----eeeeccCcCceeeehhhHH---------------HHHhhhccCCcceeEEEEecC---Ccc
Confidence 33322 221 6777776 89999999984 345667889999999999998 889
Q ss_pred EEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCC
Q 000602 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 149 ~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
+||+++..|.|.|..+.++.....+..+.+..+.-+.++.. ...+|.+++.+|.|.+||...
T Consensus 135 yiAsvs~gGdiiih~~~t~~~tt~f~~~sgqsvRll~ys~s--kr~lL~~asd~G~VtlwDv~g---------------- 196 (673)
T KOG4378|consen 135 YIASVSDGGDIIIHGTKTKQKTTTFTIDSGQSVRLLRYSPS--KRFLLSIASDKGAVTLWDVQG---------------- 196 (673)
T ss_pred eeEEeccCCcEEEEecccCccccceecCCCCeEEEeecccc--cceeeEeeccCCeEEEEeccC----------------
Confidence 99999999999999999998888887776666655666432 344677889999999999981
Q ss_pred CCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecC
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh 307 (1398)
......-...|..+...|+|+|.. .+|++.+.|..|.+||....+. . ....-
T Consensus 197 ----------------~sp~~~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s-----~------~~l~y 249 (673)
T KOG4378|consen 197 ----------------MSPIFHASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQAS-----T------DRLTY 249 (673)
T ss_pred ----------------CCcccchhhhccCCcCcceecCCccceEEEecccceEEEeecccccc-----c------ceeee
Confidence 122233456799999999999955 5789999999999999997655 1 22223
Q ss_pred CccEEEEEEc--CCEEEEEeCCCcEEEEcC--CCceEEEEecccCccEEEEEEcCCCCEEEE
Q 000602 308 NARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVT 365 (1398)
Q Consensus 308 ~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~lat 365 (1398)
..+...++|. |.+|+.|...|.|..||+ ...++.++..|.. .|++++|-|.. .+++
T Consensus 250 ~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~-sVt~vafq~s~-tvlt 309 (673)
T KOG4378|consen 250 SHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDA-SVTRVAFQPSP-TVLT 309 (673)
T ss_pred cCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeeccc-ceeEEEeeecc-eeee
Confidence 4567888997 679999999999999999 5678999999999 69999998765 4444
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.69 E-value=7.2e-15 Score=176.49 Aligned_cols=238 Identities=12% Similarity=0.145 Sum_probs=182.6
Q ss_pred ccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 66 ~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
..-..|++. |+| .+|+++| |+.|++|+..... ..-..+..+...|.+++..
T Consensus 14 ~G~t~i~~d-------~~g----efi~tcgsdg~ir~~~~~sd~--------------e~P~ti~~~g~~v~~ia~~--- 65 (933)
T KOG1274|consen 14 GGLTLICYD-------PDG----EFICTCGSDGDIRKWKTNSDE--------------EEPETIDISGELVSSIACY--- 65 (933)
T ss_pred CceEEEEEc-------CCC----CEEEEecCCCceEEeecCCcc--------------cCCchhhccCceeEEEeec---
Confidence 358889999 998 4555555 9999999986532 0111222377788888774
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCeE---EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCC
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~V~vWd~~~~~~---~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~ 221 (1398)
+.+|++|+.+++|.+|.+.+++. +..+..+.++..+ +.+|.++|+|+.|-.|++-+..
T Consensus 66 --s~~f~~~s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v-------~g~g~~iaagsdD~~vK~~~~~---------- 126 (933)
T KOG1274|consen 66 --SNHFLTGSEQNTVLRYKFPSGEEDTILARFTLPIRDLAV-------SGSGKMIAAGSDDTAVKLLNLD---------- 126 (933)
T ss_pred --ccceEEeeccceEEEeeCCCCCccceeeeeeccceEEEE-------ecCCcEEEeecCceeEEEEecc----------
Confidence 46899999999999999987653 5566666554433 5679999999999999999988
Q ss_pred CCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeee
Q 000602 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1398)
Q Consensus 222 ~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~ 301 (1398)
.......+++|+++|.+|.|+|++++||+.+-||.|++||+.++.+. ..+.-
T Consensus 127 -----------------------D~s~~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~-----~tl~~ 178 (933)
T KOG1274|consen 127 -----------------------DSSQEKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS-----KTLTG 178 (933)
T ss_pred -----------------------ccchheeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh-----hhccc
Confidence 45567789999999999999999999999999999999999988762 21110
Q ss_pred -e-EEe-cCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEec--ccCccEEEEEEcCCCCEEEEEEcCCcEE
Q 000602 302 -S-VLY-GHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIK 373 (1398)
Q Consensus 302 -~-~~~-gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~--h~~~~V~sl~~spdg~~latgg~Dg~I~ 373 (1398)
. ... -....+..++|+| ..++..+.|+.|++|+. .......+.. +.. .+..+.|+|.|+|||+++.||.|.
T Consensus 179 v~k~n~~~~s~i~~~~aW~Pk~g~la~~~~d~~Vkvy~r~~we~~f~Lr~~~~ss-~~~~~~wsPnG~YiAAs~~~g~I~ 257 (933)
T KOG1274|consen 179 VDKDNEFILSRICTRLAWHPKGGTLAVPPVDNTVKVYSRKGWELQFKLRDKLSSS-KFSDLQWSPNGKYIAASTLDGQIL 257 (933)
T ss_pred CCccccccccceeeeeeecCCCCeEEeeccCCeEEEEccCCceeheeeccccccc-ceEEEEEcCCCcEEeeeccCCcEE
Confidence 0 111 1134557788984 68888899999999999 6666666654 333 388999999999999999999999
Q ss_pred EEEcCC
Q 000602 374 VHQFQA 379 (1398)
Q Consensus 374 iwdl~~ 379 (1398)
|||.+.
T Consensus 258 vWnv~t 263 (933)
T KOG1274|consen 258 VWNVDT 263 (933)
T ss_pred EEeccc
Confidence 999964
|
|
| >KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.68 E-value=8.4e-15 Score=167.66 Aligned_cols=274 Identities=13% Similarity=0.121 Sum_probs=184.5
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY 202 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d 202 (1398)
.+...++||++.|.++...| .|..||+|+.||+|+||.+.+|.++.++.-.. .+.+++|.+. ++-.+||++. .
T Consensus 391 ~~~lvyrGHtg~Vr~iSvdp---~G~wlasGsdDGtvriWEi~TgRcvr~~~~d~--~I~~vaw~P~-~~~~vLAvA~-~ 463 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISVDP---SGEWLASGSDDGTVRIWEIATGRCVRTVQFDS--EIRSVAWNPL-SDLCVLAVAV-G 463 (733)
T ss_pred eeeeeEeccCCeEEEEEecC---CcceeeecCCCCcEEEEEeecceEEEEEeecc--eeEEEEecCC-CCceeEEEEe-c
Confidence 34556789999999999999 99999999999999999999999998876443 5677777443 2333444443 3
Q ss_pred CeEEEEEcccCCccccC-CCCCCCCCCCCCCCcceeeeccccc---ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-
Q 000602 203 NEIIVWKVDWEHVAPLL-NSPEGNHAHGSSSDFKCFKLQDQQH---TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD- 277 (1398)
Q Consensus 203 g~I~vWd~~~~~~~~~~-~~~~~~s~~~~~~~~~~i~i~~~~~---~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D- 277 (1398)
..+.+-+...+...-.. ......+.-.....+..+..|.... ...-+.....|...|..|.|+..|.||++...+
T Consensus 464 ~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~ 543 (733)
T KOG0650|consen 464 ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDS 543 (733)
T ss_pred CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCC
Confidence 44777766544211110 0000011101112334566775431 112245556799999999999999999997654
Q ss_pred --CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEE
Q 000602 278 --RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 278 --g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~ 352 (1398)
..|.|.++..... . ..+....+.|.++.|+| .+|+.++ ...|||||+ ....++++..... .|.
T Consensus 544 ~~~~VliHQLSK~~s-----Q-----~PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~kqelvKkL~tg~k-wiS 611 (733)
T KOG0650|consen 544 GNKSVLIHQLSKRKS-----Q-----SPFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSKQELVKKLLTGSK-WIS 611 (733)
T ss_pred CcceEEEEecccccc-----c-----CchhhcCCceeEEEecCCCceEEEEe-ccceEEEehhHHHHHHHHhcCCe-eee
Confidence 5788999987654 1 14444557789999995 5666665 467999999 6666666555444 599
Q ss_pred EEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCe
Q 000602 353 RCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT 432 (1398)
Q Consensus 353 sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~ 432 (1398)
+++++|.|..|+.|+.|+.+..+|+.-. .+.+..+.-|...++.++|++.-.
T Consensus 612 ~msihp~GDnli~gs~d~k~~WfDldls----------------------------skPyk~lr~H~~avr~Va~H~ryP 663 (733)
T KOG0650|consen 612 SMSIHPNGDNLILGSYDKKMCWFDLDLS----------------------------SKPYKTLRLHEKAVRSVAFHKRYP 663 (733)
T ss_pred eeeecCCCCeEEEecCCCeeEEEEcccC----------------------------cchhHHhhhhhhhhhhhhhccccc
Confidence 9999999999999999999999999421 011222233555678888877666
Q ss_pred EEEEEcC-CcEE
Q 000602 433 LYIATNH-GYLY 443 (1398)
Q Consensus 433 llv~t~~-g~i~ 443 (1398)
+++++++ |.++
T Consensus 664 Lfas~sdDgtv~ 675 (733)
T KOG0650|consen 664 LFASGSDDGTVI 675 (733)
T ss_pred eeeeecCCCcEE
Confidence 6666544 4443
|
|
| >KOG1274 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.2e-14 Score=174.55 Aligned_cols=282 Identities=12% Similarity=0.086 Sum_probs=204.3
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEE
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRV 332 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~v 332 (1398)
.+|...-+.|+|.|+|++|++|+.||.|++|+....... .+ .+.-+...|.+++....+|++|+++++|.+
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~----P~-----ti~~~g~~v~~ia~~s~~f~~~s~~~tv~~ 80 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEE----PE-----TIDISGELVSSIACYSNHFLTGSEQNTVLR 80 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccC----Cc-----hhhccCceeEEEeecccceEEeeccceEEE
Confidence 368888999999999999999999999999998765220 12 333378889999988889999999999999
Q ss_pred EcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccc
Q 000602 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1398)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 411 (1398)
|.. +++.-..+....- ++..++|+.+|+++|.||.|-.|++-++... ..
T Consensus 81 y~fps~~~~~iL~Rftl-p~r~~~v~g~g~~iaagsdD~~vK~~~~~D~-----------------------------s~ 130 (933)
T KOG1274|consen 81 YKFPSGEEDTILARFTL-PIRDLAVSGSGKMIAAGSDDTAVKLLNLDDS-----------------------------SQ 130 (933)
T ss_pred eeCCCCCccceeeeeec-cceEEEEecCCcEEEeecCceeEEEEecccc-----------------------------ch
Confidence 999 5544333433444 6899999999999999999999999988421 01
Q ss_pred eeeccCCCCcEEEEEEecCCeEEEE-EcCCcEEEEEeecCCCce-eEEEEeecCC--ccE-EEEeccCCCCCCcCCCCcE
Q 000602 412 IRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVN-WNKILQVSEG--MPI-ICMDLLSNEPKYPCGIDDW 486 (1398)
Q Consensus 412 ~~~~~~~~~~V~~lafs~dg~llv~-t~~g~i~~~~l~~~~~~~-w~~i~~~~~~--~~i-~~l~~~~~~~~~s~~~~~~ 486 (1398)
...+.+|.++|.++.|.|++.+|+. +.+|.++.|++.+..... |..+...... ..+ ..+.+ .|++..
T Consensus 131 ~~~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~~tl~~v~k~n~~~~s~i~~~~aW--------~Pk~g~ 202 (933)
T KOG1274|consen 131 EKVLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILSKTLTGVDKDNEFILSRICTRLAW--------HPKGGT 202 (933)
T ss_pred heeecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhhhhcccCCccccccccceeeeeee--------cCCCCe
Confidence 2234467789999999999988876 569999988776543222 3333222211 122 22222 356667
Q ss_pred EEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccccccCcc
Q 000602 487 VALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKT 566 (1398)
Q Consensus 487 la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~ 566 (1398)
+++...|+.|++|+..+..... .+........+. .+.|+|.|+||++++-+|.|.|||.+...
T Consensus 203 la~~~~d~~Vkvy~r~~we~~f------~Lr~~~~ss~~~-~~~wsPnG~YiAAs~~~g~I~vWnv~t~~---------- 265 (933)
T KOG1274|consen 203 LAVPPVDNTVKVYSRKGWELQF------KLRDKLSSSKFS-DLQWSPNGKYIAASTLDGQILVWNVDTHE---------- 265 (933)
T ss_pred EEeeccCCeEEEEccCCceehe------eecccccccceE-EEEEcCCCcEEeeeccCCcEEEEecccch----------
Confidence 7777789999999988766443 223222333222 46799999999999999999999987521
Q ss_pred ceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEE
Q 000602 567 NNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLF 607 (1398)
Q Consensus 567 ~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iw 607 (1398)
. . .....|+|++|-|+..-|-+-..-|+..+|
T Consensus 266 ----~-~----~~~~~Vc~~aw~p~~n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 266 ----R-H----EFKRAVCCEAWKPNANAITLITALGTLGVS 297 (933)
T ss_pred ----h-c----cccceeEEEecCCCCCeeEEEeeccccccC
Confidence 0 1 124569999999999888777777776666
|
|
| >KOG4328 consensus WD40 protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=7.3e-15 Score=164.01 Aligned_cols=267 Identities=18% Similarity=0.204 Sum_probs=190.7
Q ss_pred EECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeee
Q 000602 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1398)
Q Consensus 49 wd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 127 (1398)
+|+.+-.....++.+.+ +|.+++|+ |.-+ ..++|++. .|.|-+||+..+.. ...-+..
T Consensus 171 l~l~~~~~~~v~kv~~~-Rit~l~fH-------Pt~~--~~lva~GdK~G~VG~Wn~~~~~~-----------d~d~v~~ 229 (498)
T KOG4328|consen 171 LDLDDYRILNVAKVTDR-RITSLAFH-------PTEN--RKLVAVGDKGGQVGLWNFGTQEK-----------DKDGVYL 229 (498)
T ss_pred cccccceecceeEeccc-ceEEEEec-------ccCc--ceEEEEccCCCcEEEEecCCCCC-----------ccCceEE
Confidence 44555556667777776 89999999 5531 13444444 58999999964321 1233456
Q ss_pred cccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE--EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeE
Q 000602 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI--ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEI 205 (1398)
Q Consensus 128 l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~--~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I 205 (1398)
+..|..+|.++.|+| .+-..+++.+.||+|++-|++++.. +..+. ......+++.+ +.+...++.|+.-|..
T Consensus 230 f~~hs~~Vs~l~F~P--~n~s~i~ssSyDGtiR~~D~~~~i~e~v~s~~-~d~~~fs~~d~---~~e~~~vl~~~~~G~f 303 (498)
T KOG4328|consen 230 FTPHSGPVSGLKFSP--ANTSQIYSSSYDGTIRLQDFEGNISEEVLSLD-TDNIWFSSLDF---SAESRSVLFGDNVGNF 303 (498)
T ss_pred eccCCccccceEecC--CChhheeeeccCceeeeeeecchhhHHHhhcC-ccceeeeeccc---cCCCccEEEeecccce
Confidence 678999999999999 3556788999999999999987643 22222 23334555555 5566678888888899
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEE
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWE 284 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd 284 (1398)
.+||.+. .+.....+.-|+..|.+|+++|.. .+|||+|.|++++|||
T Consensus 304 ~~iD~R~--------------------------------~~s~~~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD 351 (498)
T KOG4328|consen 304 NVIDLRT--------------------------------DGSEYENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWD 351 (498)
T ss_pred EEEEeec--------------------------------CCccchhhhhhhcccceeecCCCCchheeecccCcceeeee
Confidence 9999982 233345566788999999999965 5689999999999999
Q ss_pred cCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCC-----CceEEEEecc--cCcc--EEE
Q 000602 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-----GKQLKMIKEH--IGRG--IWR 353 (1398)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~-----g~~l~~l~~h--~~~~--V~s 353 (1398)
++.-....+ ++ .....|...|.++.|+ +..|+|.+.|..|||||.. -.++.++... .++. ...
T Consensus 352 ~R~l~~K~s----p~--lst~~HrrsV~sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fK 425 (498)
T KOG4328|consen 352 LRQLRGKAS----PF--LSTLPHRRSVNSAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFK 425 (498)
T ss_pred hhhhcCCCC----cc--eecccccceeeeeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchh
Confidence 997654211 11 2567899999999999 3569999999999999972 1223333221 1111 234
Q ss_pred EEEcCCCCEEEEEEcCCcEEEEEcCCC
Q 000602 354 CLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1398)
Q Consensus 354 l~~spdg~~latgg~Dg~I~iwdl~~~ 380 (1398)
.+|.|+..+|+.|-.-..|-|+|-++.
T Consensus 426 A~W~P~~~li~vg~~~r~IDv~~~~~~ 452 (498)
T KOG4328|consen 426 AAWDPDYNLIVVGRYPRPIDVFDGNGG 452 (498)
T ss_pred heeCCCccEEEEeccCcceeEEcCCCC
Confidence 579999999999999999999998543
|
|
| >KOG0302 consensus Ribosome Assembly protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.67 E-value=3.6e-15 Score=162.53 Aligned_cols=211 Identities=19% Similarity=0.278 Sum_probs=159.0
Q ss_pred eeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC----------------eEEEEEccCCcceEEEEEeec
Q 000602 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS----------------SIILEVHSPERCLLYSMKLWG 188 (1398)
Q Consensus 125 ~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~----------------~~~~~l~~~~~~~~~s~~~~~ 188 (1398)
......|.+.|+.+..++.. +..+.|+=+..|.|.||++... +.+.++..+. ..-|.++|.+
T Consensus 144 ~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk-~EGy~LdWSp 221 (440)
T KOG0302|consen 144 EMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHK-GEGYGLDWSP 221 (440)
T ss_pred cccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccC-ccceeeeccc
Confidence 33445688888888888721 3345666688999999998532 2234444333 4456777633
Q ss_pred CCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC
Q 000602 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1398)
Q Consensus 189 ~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg 268 (1398)
.....+++|.--+.|++|.+.++. |.. -...+.+|+..|-.|+|||..
T Consensus 222 --~~~g~LlsGDc~~~I~lw~~~~g~-------------------------W~v-----d~~Pf~gH~~SVEDLqWSptE 269 (440)
T KOG0302|consen 222 --IKTGRLLSGDCVKGIHLWEPSTGS-------------------------WKV-----DQRPFTGHTKSVEDLQWSPTE 269 (440)
T ss_pred --ccccccccCccccceEeeeeccCc-------------------------eee-----cCccccccccchhhhccCCcc
Confidence 133468888888999999987321 110 112456799999999999954
Q ss_pred -CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC----CCceEE
Q 000602 269 -SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS----DGKQLK 341 (1398)
Q Consensus 269 -~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~----~g~~l~ 341 (1398)
..|+|||-|++|+|||++.+... .. .....|.+.|.-+.|+. .+|++|+.||+++|||+ .++++.
T Consensus 270 ~~vfaScS~DgsIrIWDiRs~~~~-----~~---~~~kAh~sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA 341 (440)
T KOG0302|consen 270 DGVFASCSCDGSIRIWDIRSGPKK-----AA---VSTKAHNSDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVA 341 (440)
T ss_pred CceEEeeecCceEEEEEecCCCcc-----ce---eEeeccCCceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcce
Confidence 67899999999999999987431 11 24478999999999983 58999999999999998 478899
Q ss_pred EEecccCccEEEEEEcCCC-CEEEEEEcCCcEEEEEcC
Q 000602 342 MIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 342 ~l~~h~~~~V~sl~~spdg-~~latgg~Dg~I~iwdl~ 378 (1398)
+|+.|.. +|+++.|+|.. ..|+++|.|..|.|||+.
T Consensus 342 ~fk~Hk~-pItsieW~p~e~s~iaasg~D~QitiWDls 378 (440)
T KOG0302|consen 342 TFKYHKA-PITSIEWHPHEDSVIAASGEDNQITIWDLS 378 (440)
T ss_pred eEEeccC-CeeEEEeccccCceEEeccCCCcEEEEEee
Confidence 9999999 79999999864 578889999999999993
|
|
| >KOG0270 consensus WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.66 E-value=2.3e-15 Score=167.64 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=171.5
Q ss_pred EEEEEEecCC-CCCCCCEEEEEe-CCcEEEEECCCC---eE---EE----E-----------EEeeeCccEEEEEEeccc
Q 000602 21 SALCFVHLPS-HLSSLPFLLAGS-GSQVLLYDLEAG---TL---IR----P-----------FQVFHGIRLHGISCNFIN 77 (1398)
Q Consensus 21 talafs~~pd-~~~~g~lLaag~-dg~I~Iwd~~tg---~~---l~----~-----------~~~~~~~~V~~i~fs~~~ 77 (1398)
.|+++...|. ..+.|.|+|.|+ ++.|.|||+.=- .+ +. + -.+|.. .|..+.|+
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTd-avl~Ls~n--- 252 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTD-AVLALSWN--- 252 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchH-HHHHHHhc---
Confidence 4667653332 235578999999 999999998421 00 00 0 012222 45556665
Q ss_pred cccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECC
Q 000602 78 CTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1398)
Q Consensus 78 ~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~D 156 (1398)
-.- ..+||+++ |++|++||+++ +++...+..|.+.|.+++|+| .....|++|+.|
T Consensus 253 ----~~~---~nVLaSgsaD~TV~lWD~~~---------------g~p~~s~~~~~k~Vq~l~wh~--~~p~~LLsGs~D 308 (463)
T KOG0270|consen 253 ----RNF---RNVLASGSADKTVKLWDVDT---------------GKPKSSITHHGKKVQTLEWHP--YEPSVLLSGSYD 308 (463)
T ss_pred ----ccc---ceeEEecCCCceEEEEEcCC---------------CCcceehhhcCCceeEEEecC--CCceEEEecccc
Confidence 222 25777776 99999999997 667788889999999999999 366799999999
Q ss_pred CeEEEEEcCCCe---EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000602 157 NSIRVWDISNSS---IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1398)
Q Consensus 157 g~V~vWd~~~~~---~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1398)
++|.+.|.+... ...++.+. +-.+.|.++ ....+++++.||+|+-+|++
T Consensus 309 ~~V~l~D~R~~~~s~~~wk~~g~----VEkv~w~~~--se~~f~~~tddG~v~~~D~R---------------------- 360 (463)
T KOG0270|consen 309 GTVALKDCRDPSNSGKEWKFDGE----VEKVAWDPH--SENSFFVSTDDGTVYYFDIR---------------------- 360 (463)
T ss_pred ceEEeeeccCccccCceEEeccc----eEEEEecCC--CceeEEEecCCceEEeeecC----------------------
Confidence 999999998421 12223222 223444333 34578889999999999998
Q ss_pred cceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCc---
Q 000602 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA--- 309 (1398)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~--- 309 (1398)
..++++.++..|.+.|.+|++++.- .+|+|++.|+.|++|++...... ....|..
T Consensus 361 ----------~~~~~vwt~~AHd~~ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~-----------~v~~~~~~~~ 419 (463)
T KOG0270|consen 361 ----------NPGKPVWTLKAHDDEISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK-----------SVKEHSFKLG 419 (463)
T ss_pred ----------CCCCceeEEEeccCCcceEEecCCCCcceeeccccceEEEEeecCCCCc-----------cccccccccc
Confidence 2568899999999999999999854 57899999999999999875441 2222322
Q ss_pred cEEEEEEc---CCEEEEEeCCCcEEEEcC-CCc
Q 000602 310 RVWDCCLT---DSFIITAGEDCTCRVWGS-DGK 338 (1398)
Q Consensus 310 ~V~~l~~s---~~~l~sgs~Dg~i~vWd~-~g~ 338 (1398)
+..|.++. +..++.||..+.++|||+ +..
T Consensus 420 rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~ 452 (463)
T KOG0270|consen 420 RLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNS 452 (463)
T ss_pred ceeecccCCCcceEEEecCccceEEEeecccCh
Confidence 34455554 368899999999999998 543
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.65 E-value=7.9e-14 Score=153.95 Aligned_cols=349 Identities=16% Similarity=0.161 Sum_probs=215.5
Q ss_pred CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 176 ~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
|....++++.|+..+ ...+++|+.|..|++|.+........ ...-..+..+..|
T Consensus 11 H~~~pv~s~dfq~n~--~~~laT~G~D~~iriW~v~r~~~~~~------------------------~~~V~y~s~Ls~H 64 (434)
T KOG1009|consen 11 HDHEPVYSVDFQKNS--LNKLATAGGDKDIRIWKVNRSEPGGG------------------------DMKVEYLSSLSRH 64 (434)
T ss_pred cCCCceEEEEeccCc--ccceecccCccceeeeeeeecCCCCC------------------------ceeEEEeecccCC
Confidence 344568888886553 23999999999999999873221110 0033456778899
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc------CCCCc-eEeeeeEEecCCccEEEEEEc--CCEEEEEeC
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK------DSDSI-EEVGSSVLYGHNARVWDCCLT--DSFIITAGE 326 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~------~~~~~-~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~ 326 (1398)
...|+.|.|+|+|..||||+++|.|.+|....-... ..... -.+. ..+.+|...|..++|+ +.++++++.
T Consensus 65 ~~aVN~vRf~p~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~-k~lr~h~~diydL~Ws~d~~~l~s~s~ 143 (434)
T KOG1009|consen 65 TRAVNVVRFSPDGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVK-KVLRGHRDDIYDLAWSPDSNFLVSGSV 143 (434)
T ss_pred cceeEEEEEcCCcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEE-EEecccccchhhhhccCCCceeeeeec
Confidence 999999999999999999999999999988731110 00010 1122 4788999999999998 589999999
Q ss_pred CCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCC-CcccccCCCccccccCCccEEEee
Q 000602 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIK 404 (1398)
Q Consensus 327 Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~-~l~~l~~~~~~v~~~~~~~~~~~~ 404 (1398)
|.++++||+ .|..+..+..|.. -|..++|.|-++++++-+.|...+.+++.-. .++... +.. +....
T Consensus 144 dns~~l~Dv~~G~l~~~~~dh~~-yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~-~~~---------m~~~~ 212 (434)
T KOG1009|consen 144 DNSVRLWDVHAGQLLAILDDHEH-YVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHG-LDI---------MPAKA 212 (434)
T ss_pred cceEEEEEeccceeEeecccccc-ccceeecchhhhhhhhhccCcccceeeeeeeeeeeeee-eeE---------eeecc
Confidence 999999999 8999999999998 5999999999999999999998888777321 111000 000 00000
Q ss_pred -eCCCccceeeccC--CCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEEeec-CCccEEEEeccCCCCCCc
Q 000602 405 -IPNFSEQIRLTDS--KSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVS-EGMPIICMDLLSNEPKYP 480 (1398)
Q Consensus 405 -~~~~~~~~~~~~~--~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~-~~~~i~~l~~~~~~~~~s 480 (1398)
.+......++... -....+.++|+|+|.+++.- +|.+. .-.........++... ...|+..+.
T Consensus 213 ~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtP-ag~~~---~g~~~~~n~tYvfsrk~l~rP~~~lp--------- 279 (434)
T KOG1009|consen 213 FNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTP-AGLFK---VGGGVFRNTSYVFSRKDLKRPAARLP--------- 279 (434)
T ss_pred cCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcc-cceee---eCCceeeceeEeeccccccCceeecC---------
Confidence 0000011111111 11356888999999877753 33221 1110001111222222 122333221
Q ss_pred CCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCccc
Q 000602 481 CGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVC 560 (1398)
Q Consensus 481 ~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~ 560 (1398)
++....+++... -..|.+..-... ..+ ++.--+.++.-.....++++|.+...
T Consensus 280 ~~~k~~lavr~~---pVy~elrp~~~~--------------~~~------~~lpyrlvfaiAt~~svyvydtq~~~---- 332 (434)
T KOG1009|consen 280 SPKKPALAVRFS---PVYYELRPLSSE--------------KFL------FVLPYRLVFAIATKNSVYVYDTQTLE---- 332 (434)
T ss_pred CCCcceEEEEee---eeEEEecccccc--------------ccc------cccccceEEEEeecceEEEecccccc----
Confidence 233445555542 223343321100 001 11122333333345679999977532
Q ss_pred cccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCc
Q 000602 561 YESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 561 ~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~ 612 (1398)
.+.+... -|-.+||.++|++||..|+..|.||..-+-.++..
T Consensus 333 -------P~~~v~n---ihy~~iTDiaws~dg~~l~vSS~DGyCS~vtfe~~ 374 (434)
T KOG1009|consen 333 -------PLAVVDN---IHYSAITDIAWSDDGSVLLVSSTDGFCSLVTFEPW 374 (434)
T ss_pred -------ceEEEee---eeeeeecceeecCCCcEEEEeccCCceEEEEEcch
Confidence 1223333 47888999999999999999999998887776653
|
|
| >KOG1273 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.6e-14 Score=152.28 Aligned_cols=293 Identities=13% Similarity=0.132 Sum_probs=197.5
Q ss_pred EEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCC
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~ 214 (1398)
-.|+.|++ .|.+||+|+.||.|.|||+.+...-..+..|.+ .+.+++| +++|..|++++.|..|.+||+.
T Consensus 26 a~~~~Fs~---~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~-pi~sl~W---S~dgr~LltsS~D~si~lwDl~--- 95 (405)
T KOG1273|consen 26 AECCQFSR---WGDYLAVGCANGRVVIYDFDTFRIARMLSAHVR-PITSLCW---SRDGRKLLTSSRDWSIKLWDLL--- 95 (405)
T ss_pred cceEEecc---CcceeeeeccCCcEEEEEccccchhhhhhcccc-ceeEEEe---cCCCCEeeeecCCceeEEEecc---
Confidence 68999999 999999999999999999998776555555544 5678887 8999999999999999999998
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcccCC
Q 000602 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~-~LaS~s~Dg~V~iWd~~~~~~~~~ 293 (1398)
.+.+++++. ...+|+.+.|+|... ..+.+-.+..-.+-++..+...
T Consensus 96 ------------------------------~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~-- 142 (405)
T KOG1273|consen 96 ------------------------------KGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHS-- 142 (405)
T ss_pred ------------------------------CCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCcee--
Confidence 556666665 578999999999543 3333333444555565543321
Q ss_pred CCceEeeeeEEecCCccE-EEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 294 DSIEEVGSSVLYGHNARV-WDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 294 ~~~~~i~~~~~~gh~~~V-~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
+-+..-.+....+ .+..|. |+++++|...|.+.+++. +.+++..++-.....|..+.|+..|++|+.-+.|
T Consensus 143 -----~Lp~d~d~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~vas~rits~~~IK~I~~s~~g~~liiNtsD 217 (405)
T KOG1273|consen 143 -----VLPKDDDGDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLECVASFRITSVQAIKQIIVSRKGRFLIINTSD 217 (405)
T ss_pred -----eccCCCccccccccccccccCCCCEEEEecCcceEEEEecchheeeeeeeechheeeeEEEEeccCcEEEEecCC
Confidence 0000000111111 112344 799999999999999999 7788888877764479999999999999999999
Q ss_pred CcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeec
Q 000602 370 SAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCD 449 (1398)
Q Consensus 370 g~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~ 449 (1398)
..||.|+++.-....-.+... ...++.+ .. +.-.=.+++|+.+|.++++++ .+-..+-+|.
T Consensus 218 RvIR~ye~~di~~~~r~~e~e-----~~~K~qD-----------vV--Nk~~Wk~ccfs~dgeYv~a~s-~~aHaLYIWE 278 (405)
T KOG1273|consen 218 RVIRTYEISDIDDEGRDGEVE-----PEHKLQD-----------VV--NKLQWKKCCFSGDGEYVCAGS-ARAHALYIWE 278 (405)
T ss_pred ceEEEEehhhhcccCccCCcC-----hhHHHHH-----------HH--hhhhhhheeecCCccEEEecc-ccceeEEEEe
Confidence 999999984211000000000 0000000 00 011235788999999888876 3334444778
Q ss_pred CCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcC
Q 000602 450 MDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVG 503 (1398)
Q Consensus 450 ~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~ 503 (1398)
...+..-+++.+..+.....++..+- ...+++- ..|.++||....
T Consensus 279 ~~~GsLVKILhG~kgE~l~DV~whp~--------rp~i~si-~sg~v~iw~~~~ 323 (405)
T KOG1273|consen 279 KSIGSLVKILHGTKGEELLDVNWHPV--------RPIIASI-ASGVVYIWAVVQ 323 (405)
T ss_pred cCCcceeeeecCCchhheeecccccc--------eeeeeec-cCCceEEEEeec
Confidence 77777778888887666655544322 2334433 789999998754
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.63 E-value=6.4e-12 Score=151.82 Aligned_cols=366 Identities=22% Similarity=0.343 Sum_probs=253.1
Q ss_pred CeeccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-EEEEEEeeeCccEEEEEE-eccccccCCCCccceeE
Q 000602 14 GQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-LIRPFQVFHGIRLHGISC-NFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 14 ~~h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~-~l~~~~~~~~~~V~~i~f-s~~~~~~~pdg~~~~~~ 90 (1398)
..|...|.++.|. +. +..++.+. ++.+.+|+...+. .+..+.......+..+.+ + +++. ..
T Consensus 62 ~~~~~~i~~~~~~--~~----~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~---~~ 125 (466)
T COG2319 62 RGHEDSITSIAFS--PD----GELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALSS-------PDGN---SI 125 (466)
T ss_pred eeccceEEEEEEC--CC----CcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEEC-------CCcc---eE
Confidence 3478889999999 77 77888776 8999999998886 666666533335777776 4 6651 24
Q ss_pred EEE-Ec-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCCC
Q 000602 91 VAL-FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1398)
Q Consensus 91 la~-~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~ 167 (1398)
++. .. ++.+.+|++.. .......+..|...|.+++|+| ++..+++++. |+.+++|++..+
T Consensus 126 ~~~~~~~d~~~~~~~~~~--------------~~~~~~~~~~~~~~v~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 188 (466)
T COG2319 126 LLASSSLDGTVKLWDLST--------------PGKLIRTLEGHSESVTSLAFSP---DGKLLASGSSLDGTIKLWDLRTG 188 (466)
T ss_pred EeccCCCCccEEEEEecC--------------CCeEEEEEecCcccEEEEEECC---CCCEEEecCCCCCceEEEEcCCC
Confidence 443 34 89999999984 1356677889999999999999 8888888875 999999999987
Q ss_pred eEEEEEccCCcceEEEEEeecCCCCCc-EEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccce
Q 000602 168 SIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1398)
Q Consensus 168 ~~~~~l~~~~~~~~~s~~~~~~s~d~~-~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~ 246 (1398)
..+..+.. +...+..+.+ .+++. .+++++.|+.|++||.. .+
T Consensus 189 ~~~~~~~~-~~~~v~~~~~---~~~~~~~~~~~~~d~~i~~wd~~---------------------------------~~ 231 (466)
T COG2319 189 KPLSTLAG-HTDPVSSLAF---SPDGGLLIASGSSDGTIRLWDLS---------------------------------TG 231 (466)
T ss_pred ceEEeecc-CCCceEEEEE---cCCcceEEEEecCCCcEEEEECC---------------------------------CC
Confidence 77777766 3445667777 36665 55556999999999776 34
Q ss_pred eEEE-EEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEE
Q 000602 247 VNLF-RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIIT 323 (1398)
Q Consensus 247 ~~~~-~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~s 323 (1398)
..+. .+.+|.... -..|+|++.++++++.|+.+++|+...... .+ ....+|...+.++.|.+ ..+++
T Consensus 232 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-------~~--~~~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 232 KLLRSTLSGHSDSV-VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-------LL--RTLSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred cEEeeecCCCCcce-eEeECCCCCEEEEecCCCcEEEeeecCCCc-------EE--EEEecCCccEEEEEECCCCCEEEE
Confidence 4444 678888875 448999999999999999999999987543 11 13378899999999985 78888
Q ss_pred EeCCCcEEEEcC-CCceEEEEe--cccCccEEEEEEcCCCCEEEEE-EcCCcEEEEEcCCCCcccccCCCccccccCCcc
Q 000602 324 AGEDCTCRVWGS-DGKQLKMIK--EHIGRGIWRCLYDSLSSLLVTA-GFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399 (1398)
Q Consensus 324 gs~Dg~i~vWd~-~g~~l~~l~--~h~~~~V~sl~~spdg~~latg-g~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~ 399 (1398)
++.|+.+++|+. ......... .|.. .+..+.+.+++..++.+ ..|+.+++|++.... .
T Consensus 302 ~~~d~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~-~---------------- 363 (466)
T COG2319 302 GSSDGTVRLWDLETGKLLSSLTLKGHEG-PVSSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK-P---------------- 363 (466)
T ss_pred eeCCCcEEEEEcCCCceEEEeeecccCC-ceEEEEECCCCCEEEEeecCCCcEEeeecCCCc-e----------------
Confidence 999999999988 455455544 6766 58999994333556665 688999999985321 0
Q ss_pred EEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE--EcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCC
Q 000602 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA--TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEP 477 (1398)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~--t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~ 477 (1398)
..... .. ..+..+.+.+ ...+.. ..++.+..+.. ............. ..+.....
T Consensus 364 ~~~~~------------~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~-~~~~~~~~----- 420 (466)
T COG2319 364 LKTLE------------GH-SNVLSVSFSP-DGRVVSSGSTDGTVRLWDL---STGSLLRNLDGHT-SRVTSLDF----- 420 (466)
T ss_pred eEEec------------CC-ceEEEEEECC-CCCEEEEecCCCceEEEec---ccCeeeeeccCCC-CcEEEEEE-----
Confidence 00000 00 1156666666 432332 34555554433 2222111111110 34444433
Q ss_pred CCcCCCCcEEEEEeCCCCEEEEEEcC
Q 000602 478 KYPCGIDDWVALGDGKGNMTIVRVVG 503 (1398)
Q Consensus 478 ~~s~~~~~~la~gs~dG~I~Iwd~~~ 503 (1398)
.+.+..++.+..++.+++|+...
T Consensus 421 ---~~~~~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 421 ---SPDGKSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred ---CCCCcEEEEecCCCcEEEEeccC
Confidence 24566778888899999999876
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-14 Score=173.51 Aligned_cols=305 Identities=15% Similarity=0.198 Sum_probs=210.8
Q ss_pred EEEEeCCcCe-eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee--eCccEEEEEEeccccccC
Q 000602 6 LSEWRLDVGQ-YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--HGIRLHGISCNFINCTEG 81 (1398)
Q Consensus 6 v~iWdl~~~~-h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~--~~~~V~~i~fs~~~~~~~ 81 (1398)
|..||..... -.++-..+.|+ |= ...++++. .-.|+|||.+.++.+..|... ...+|..+.+-.+
T Consensus 1052 i~~W~~~~~~~n~~~pk~~~~h--pf----~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe----- 1120 (1387)
T KOG1517|consen 1052 IGNWDQKFMTGNNQPPKTLKFH--PF----EPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE----- 1120 (1387)
T ss_pred ccchHHHHHhcCCCCCceeeec--CC----CceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc-----
Confidence 4456633222 12345567777 54 45677766 479999999999998777642 2457888887622
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc-------CCCcEEEEEEEeecCCCcEEEEEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGNRSLAIGC 154 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~v~fsp~~~dg~~Latgs 154 (1398)
-|. ..+++++.||.||||+--.... + ..+++....+ -.+.=.-++|.. ...+|+++|
T Consensus 1121 ~D~---aLlLtas~dGvIRIwk~y~~~~--~--------~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ---~~G~Ll~tG 1184 (1387)
T KOG1517|consen 1121 QDD---ALLLTASSDGVIRIWKDYADKW--K--------KPELVTAWSSLSDQLPGARGTGLVVDWQQ---QSGHLLVTG 1184 (1387)
T ss_pred cch---hheeeeccCceEEEeccccccc--C--------CceeEEeeccccccCccCCCCCeeeehhh---hCCeEEecC
Confidence 222 2556666699999998643210 0 1223222211 111113345555 444566666
Q ss_pred CCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCc
Q 000602 155 SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1398)
Q Consensus 155 ~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1398)
.-..|+|||.........+.....+.+.++. ++...|..|++|..||.|++||.+
T Consensus 1185 d~r~IRIWDa~~E~~~~diP~~s~t~vTaLS--~~~~~gn~i~AGfaDGsvRvyD~R----------------------- 1239 (1387)
T KOG1517|consen 1185 DVRSIRIWDAHKEQVVADIPYGSSTLVTALS--ADLVHGNIIAAGFADGSVRVYDRR----------------------- 1239 (1387)
T ss_pred CeeEEEEEecccceeEeecccCCCccceeec--ccccCCceEEEeecCCceEEeecc-----------------------
Confidence 6889999999998888888877776666653 344568999999999999999988
Q ss_pred ceeeecccccceeEEEEEeCccCC--EEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecC---C
Q 000602 235 KCFKLQDQQHTAVNLFRLVGHEGS--IFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH---N 308 (1398)
Q Consensus 235 ~~i~i~~~~~~~~~~~~l~gH~~~--I~~vafspdg~-~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh---~ 308 (1398)
.......+...+.|... |..+.+.+.|- .|+||+.||.|++||++.... ...+ ....| .
T Consensus 1240 -------~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~-----e~~~---~iv~~~~yG 1304 (1387)
T KOG1517|consen 1240 -------MAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSK-----ETFL---TIVAHWEYG 1304 (1387)
T ss_pred -------cCCccccceeecccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcc-----cccc---eeeeccccC
Confidence 11133467778889888 99999999775 499999999999999998522 1111 22222 2
Q ss_pred ccEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEeccc------CccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 309 ARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHI------GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 309 ~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~------~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+..+++..+ ...+++|+. +.|+||++.|+.+..++.+. ...+.+++|+|-...+|+|..|.+|.||...
T Consensus 1305 s~lTal~VH~hapiiAsGs~-q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~~llAaG~~Ds~V~iYs~~ 1381 (1387)
T KOG1517|consen 1305 SALTALTVHEHAPIIASGSA-QLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHRLLLAAGSADSTVSIYSCE 1381 (1387)
T ss_pred ccceeeeeccCCCeeeecCc-ceEEEEecChhhhcccccCcccccCcCCCcceeeecchhHhhhhccCCceEEEeecC
Confidence 247778777 478888888 99999999988877665432 2258999999999999999999999999874
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.62 E-value=2.2e-14 Score=151.24 Aligned_cols=272 Identities=20% Similarity=0.297 Sum_probs=191.7
Q ss_pred CCcEEEEECCC--CeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----C----CeEEEEEecCCCCCCC
Q 000602 43 GSQVLLYDLEA--GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----E----KRVKLFELNFELSPNS 112 (1398)
Q Consensus 43 dg~I~Iwd~~t--g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d----~~V~vwdl~~~~~~~~ 112 (1398)
++.|.+-+++. +++..+.-.|+.+.|+.|+-+ |... ++|+++- | -.+.||.+..+.. .+
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~-------P~d~---~ilaT~yn~~s~s~vl~~aaiw~ipe~~~-~S 107 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS-------PFDQ---RILATVYNDTSDSGVLTGAAIWQIPEPLG-QS 107 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC-------CCCC---ceEEEEEeccCCCcceeeEEEEecccccC-cc
Confidence 36777766654 344433333455579999988 6542 5666532 2 3589999974321 11
Q ss_pred CCCCcccccceeeeecc-cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE-EEEEccCC----cceEEEEEe
Q 000602 113 QYQPETCVNLSLVQSLP-RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-ILEVHSPE----RCLLYSMKL 186 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~-~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~-~~~l~~~~----~~~~~s~~~ 186 (1398)
. ...++++..|. .+-+.|.|+.|.| ++..|++-. |+.|.+|++..+.. +..+..+. ....++-+|
T Consensus 108 ~-----~~tlE~v~~Ldteavg~i~cvew~P---ns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~W 178 (370)
T KOG1007|consen 108 N-----SSTLECVASLDTEAVGKINCVEWEP---NSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAW 178 (370)
T ss_pred c-----cchhhHhhcCCHHHhCceeeEEEcC---CCCeeEEec-cCceEEEEcccCcchheeecccccccccceeccccc
Confidence 1 12366676666 5667999999999 999888664 89999999987765 44444322 222344444
Q ss_pred ecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC
Q 000602 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS 266 (1398)
Q Consensus 187 ~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp 266 (1398)
.+ ..++..+++. .|+++..||+++ ..+....-..|...|..+.|+|
T Consensus 179 sp-HHdgnqv~tt-~d~tl~~~D~RT--------------------------------~~~~~sI~dAHgq~vrdlDfNp 224 (370)
T KOG1007|consen 179 SP-HHDGNQVATT-SDSTLQFWDLRT--------------------------------MKKNNSIEDAHGQRVRDLDFNP 224 (370)
T ss_pred CC-CCccceEEEe-CCCcEEEEEccc--------------------------------hhhhcchhhhhcceeeeccCCC
Confidence 22 2366666654 589999999982 1122223357888999999999
Q ss_pred CCC-EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC---CC--
Q 000602 267 CGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DG-- 337 (1398)
Q Consensus 267 dg~-~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~---~g-- 337 (1398)
+.+ +|+||++||.|||||.+..+.+ + ..+.+|.-+||++.|+ +++|+++|.|..|.+|.. ..
T Consensus 225 nkq~~lvt~gDdgyvriWD~R~tk~p----v-----~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 225 NKQHILVTCGDDGYVRIWDTRKTKFP----V-----QELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred CceEEEEEcCCCccEEEEeccCCCcc----c-----cccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 876 5899999999999999986552 3 3888999999999998 589999999999999986 10
Q ss_pred -------------------------ceEEEEecccCccEEEEEEcCCCC-EEEEEEcCCcEEEEEcC
Q 000602 338 -------------------------KQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 338 -------------------------~~l~~l~~h~~~~V~sl~~spdg~-~latgg~Dg~I~iwdl~ 378 (1398)
..+.++..|.. .|++++|+.-.. .+|+-+.||.+.|=.+.
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehED-SVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHED-SVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred ccccccccccCcchhhHHhccccccccccccccccc-ceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 13446777877 699999986555 57888999999887663
|
|
| >COG2319 FOG: WD40 repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-11 Score=149.83 Aligned_cols=370 Identities=19% Similarity=0.316 Sum_probs=252.0
Q ss_pred ecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe-EEEEEccCCcceEEEEEeecCCCCCc-EEEE-EECCC
Q 000602 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNLEAL-RIAS-GTIYN 203 (1398)
Q Consensus 127 ~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-~~~~l~~~~~~~~~s~~~~~~s~d~~-~las-gs~dg 203 (1398)
.+..|...|.++.|.+ .+..++.++.|+.+.+|+...+. .+..+.......+..+.+. .+++. .++. +..|+
T Consensus 60 ~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~d~ 134 (466)
T COG2319 60 LLRGHEDSITSIAFSP---DGELLLSGSSDGTIKLWDLDNGEKLIKSLEGLHDSSVSKLALS--SPDGNSILLASSSLDG 134 (466)
T ss_pred eeeeccceEEEEEECC---CCcEEEEecCCCcEEEEEcCCCceeEEEEeccCCCceeeEEEE--CCCcceEEeccCCCCc
Confidence 4557889999999999 99999999999999999998886 5655555332223333332 34444 4444 34599
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc-eeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCeEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT-AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~-~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~V~ 281 (1398)
.+.+|+.. . ......+..|...|..++|+|++..+++++. |+.++
T Consensus 135 ~~~~~~~~---------------------------------~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~ 181 (466)
T COG2319 135 TVKLWDLS---------------------------------TPGKLIRTLEGHSESVTSLAFSPDGKLLASGSSLDGTIK 181 (466)
T ss_pred cEEEEEec---------------------------------CCCeEEEEEecCcccEEEEEECCCCCEEEecCCCCCceE
Confidence 99999998 3 5667788999999999999999999999886 99999
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--C-EEEEEeCCCcEEEEcC-CCceEE-EEecccCccEEEEEE
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S-FIITAGEDCTCRVWGS-DGKQLK-MIKEHIGRGIWRCLY 356 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~-~l~sgs~Dg~i~vWd~-~g~~l~-~l~~h~~~~V~sl~~ 356 (1398)
+|++..... + ..+.+|...|.+++|.+ . .+++++.|+.+++||. .+..+. .+..|... . ...|
T Consensus 182 ~~~~~~~~~-----~-----~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~-~-~~~~ 249 (466)
T COG2319 182 LWDLRTGKP-----L-----STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDS-V-VSSF 249 (466)
T ss_pred EEEcCCCce-----E-----EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEeeecCCCCcc-e-eEeE
Confidence 999997444 2 26677999999999983 3 5555599999999998 577777 68888773 3 3379
Q ss_pred cCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE
Q 000602 357 DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA 436 (1398)
Q Consensus 357 spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~ 436 (1398)
+|++.++++++.|+.+++|++..... .+.. ...|...+.++.|.|++..+++
T Consensus 250 ~~~~~~~~~~~~d~~~~~~~~~~~~~----------------~~~~------------~~~~~~~v~~~~~~~~~~~~~~ 301 (466)
T COG2319 250 SPDGSLLASGSSDGTIRLWDLRSSSS----------------LLRT------------LSGHSSSVLSVAFSPDGKLLAS 301 (466)
T ss_pred CCCCCEEEEecCCCcEEEeeecCCCc----------------EEEE------------EecCCccEEEEEECCCCCEEEE
Confidence 99998999999999999999953210 0001 0245678999999996655554
Q ss_pred -EcCCcEEEEEeecCCCceeEEEEe-ecCCccEEEEeccCCCCCCcCCCCcEEEEE-eCCCCEEEEEEcCCccccceeee
Q 000602 437 -TNHGYLYHTKLCDMDSVNWNKILQ-VSEGMPIICMDLLSNEPKYPCGIDDWVALG-DGKGNMTIVRVVGDVHTPQLSFT 513 (1398)
Q Consensus 437 -t~~g~i~~~~l~~~~~~~w~~i~~-~~~~~~i~~l~~~~~~~~~s~~~~~~la~g-s~dG~I~Iwd~~~~~~~~~~~~~ 513 (1398)
+.++.+. +|+........... ..+...+..+.+ . ++...++.+ ..|+.+.+|++......
T Consensus 302 ~~~d~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------~~~~~~~~~~~~d~~~~~~~~~~~~~~------ 364 (466)
T COG2319 302 GSSDGTVR---LWDLETGKLLSSLTLKGHEGPVSSLSF-S-------PDGSLLVSGGSDDGTIRLWDLRTGKPL------ 364 (466)
T ss_pred eeCCCcEE---EEEcCCCceEEEeeecccCCceEEEEE-C-------CCCCEEEEeecCCCcEEeeecCCCcee------
Confidence 4444444 44433332111111 122224555544 2 112344444 67889999998765411
Q ss_pred eeeecCcccceeEEEEEecCCCcEEEE-EcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCC
Q 000602 514 FTWSAGIERQLLGTYWCKSLGHRFIFT-ADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFED 592 (1398)
Q Consensus 514 ~~~~~~~~~~~l~~~~~~s~d~~~L~s-~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg 592 (1398)
...... ..... +.+++ ...++. +..++.+.+|+...... ...+. .+...+....+++++
T Consensus 365 ~~~~~~--~~~~~--~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~-~~~~~~~~~~~~~~~ 424 (466)
T COG2319 365 KTLEGH--SNVLS--VSFSP-DGRVVSSGSTDGTVRLWDLSTGSL--------------LRNLD-GHTSRVTSLDFSPDG 424 (466)
T ss_pred EEecCC--ceEEE--EEECC-CCCEEEEecCCCceEEEecccCee--------------eeecc-CCCCcEEEEEECCCC
Confidence 111111 11222 34445 333443 68889999999875421 11111 111678899999999
Q ss_pred CEEEEecCCCeEEEEECCC
Q 000602 593 EVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 593 ~lLatGs~dGtI~Iwd~~~ 611 (1398)
..++.+..++++.+|+...
T Consensus 425 ~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 425 KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred cEEEEecCCCcEEEEeccC
Confidence 9999999999999999875
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.62 E-value=6.6e-15 Score=159.09 Aligned_cols=285 Identities=14% Similarity=0.175 Sum_probs=194.6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCC
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 36 ~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~ 114 (1398)
..+|++. .|.|++||..+++.+..|+++.. .+.+++|... ..|. .++.++.||+|++||++...
T Consensus 41 ~~vav~lSngsv~lyd~~tg~~l~~fk~~~~-~~N~vrf~~~---ds~h-----~v~s~ssDG~Vr~wD~Rs~~------ 105 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQLLEEFKGPPA-TTNGVRFISC---DSPH-----GVISCSSDGTVRLWDIRSQA------ 105 (376)
T ss_pred eeEEEEecCCeEEEEeccchhhhheecCCCC-cccceEEecC---CCCC-----eeEEeccCCeEEEEEeecch------
Confidence 3456655 79999999999999999999887 7999999822 0233 46666679999999998643
Q ss_pred CCcccccceeeeecccCC-CcEEEEEEEeecCCCcEEEEEE----CCCeEEEEEcCCCeE-EEEEccCCcceEEEEEeec
Q 000602 115 QPETCVNLSLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSI-ILEVHSPERCLLYSMKLWG 188 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~-~~V~~v~fsp~~~dg~~Latgs----~Dg~V~vWd~~~~~~-~~~l~~~~~~~~~s~~~~~ 188 (1398)
.........|. .+..|++..- .+..+++|. .+..|.+||++..+. +..+...+..-+.+++|++
T Consensus 106 -------e~a~~~~~~~~~~~f~~ld~nc---k~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP 175 (376)
T KOG1188|consen 106 -------ESARISWTQQSGTPFICLDLNC---KKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHP 175 (376)
T ss_pred -------hhhheeccCCCCCcceEeeccC---cCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecC
Confidence 12223344454 4667777765 677888875 377899999998776 6666655666788999987
Q ss_pred CCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC
Q 000602 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1398)
Q Consensus 189 ~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg 268 (1398)
. +.++|++|+.||-|.++|+... .....+...-.|...|..+.|..++
T Consensus 176 ~--~pnlLlSGSvDGLvnlfD~~~d------------------------------~EeDaL~~viN~~sSI~~igw~~~~ 223 (376)
T KOG1188|consen 176 S--DPNLLLSGSVDGLVNLFDTKKD------------------------------NEEDALLHVINHGSSIHLIGWLSKK 223 (376)
T ss_pred C--CCCeEEeecccceEEeeecCCC------------------------------cchhhHHHhhcccceeeeeeeecCC
Confidence 6 4578999999999999999811 1222333334578889999999877
Q ss_pred -CEEEEEECCCeEEEEEcCCCcccCCCCceEeee---eEEecCCccEEEEEEc-CCEEEEEeC-CCcEEEEcC----C--
Q 000602 269 -SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT-DSFIITAGE-DCTCRVWGS----D-- 336 (1398)
Q Consensus 269 -~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~---~~~~gh~~~V~~l~~s-~~~l~sgs~-Dg~i~vWd~----~-- 336 (1398)
+.+.+-+...+..+|++..+..........+.. +....-..-|.+..-. ...++.++. -++.+++-+ .
T Consensus 224 ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~ 303 (376)
T KOG1188|consen 224 YKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGS 303 (376)
T ss_pred cceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeeccccc
Confidence 568888999999999999876520000000000 0000001111111111 245555554 455555544 1
Q ss_pred -CceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 337 -GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 337 -g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.+.+..+.+++..-|+++.|...+..+.|||.||.+.+|..
T Consensus 304 ~~~~~a~l~g~~~eiVR~i~~~~~~~~l~TGGEDG~l~~Wk~ 345 (376)
T KOG1188|consen 304 LLTEPAILQGGHEEIVRDILFDVKNDVLYTGGEDGLLQAWKV 345 (376)
T ss_pred ccCccccccCCcHHHHHHHhhhcccceeeccCCCceEEEEec
Confidence 34566777765557888999888899999999999999996
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.61 E-value=5.3e-14 Score=150.57 Aligned_cols=278 Identities=15% Similarity=0.194 Sum_probs=199.1
Q ss_pred eEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC-------C-----eEEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA-------G-----TLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t-------g-----~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
...+.|| || |..+++-+ |..+.+|++.. . +...+++..++..|..-+|-+-.-...|+.
T Consensus 52 ~kgckWS--PD----GSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-- 123 (406)
T KOG2919|consen 52 LKGCKWS--PD----GSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-- 123 (406)
T ss_pred hccceeC--CC----CceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc--
Confidence 3567899 99 77777766 89999999842 1 122344445566788777764433445775
Q ss_pred ceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCc---EEEEEEEeecCCCcEEEEEECCCeEEEE
Q 000602 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW---VFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1398)
Q Consensus 87 ~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~---V~~v~fsp~~~dg~~Latgs~Dg~V~vW 162 (1398)
.++|+++ +.-|++||.-++. ++.-...-.|.+. -.+++|+| ||..|..| ..++|+++
T Consensus 124 --~l~a~ssr~~PIh~wdaftG~-------------lraSy~~ydh~de~taAhsL~Fs~---DGeqlfaG-ykrcirvF 184 (406)
T KOG2919|consen 124 --NLFAVSSRDQPIHLWDAFTGK-------------LRASYRAYDHQDEYTAAHSLQFSP---DGEQLFAG-YKRCIRVF 184 (406)
T ss_pred --ceeeeccccCceeeeeccccc-------------cccchhhhhhHHhhhhheeEEecC---CCCeEeec-ccceEEEe
Confidence 5666655 8999999998744 2222222234444 36899999 99999755 67899999
Q ss_pred Ec-CCCeEE---EEE---ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcc
Q 000602 163 DI-SNSSII---LEV---HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFK 235 (1398)
Q Consensus 163 d~-~~~~~~---~~l---~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~ 235 (1398)
|+ +.|+.- .++ +.....++.++++.+ .+...++.|+.-..+-|+.-.
T Consensus 185 dt~RpGr~c~vy~t~~~~k~gq~giisc~a~sP--~~~~~~a~gsY~q~~giy~~~------------------------ 238 (406)
T KOG2919|consen 185 DTSRPGRDCPVYTTVTKGKFGQKGIISCFAFSP--MDSKTLAVGSYGQRVGIYNDD------------------------ 238 (406)
T ss_pred eccCCCCCCcchhhhhcccccccceeeeeeccC--CCCcceeeecccceeeeEecC------------------------
Confidence 99 444321 111 122344566666633 244588889888888887765
Q ss_pred eeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCcccCCCCceEeeeeEEecCCc-cEEE
Q 000602 236 CFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA-RVWD 313 (1398)
Q Consensus 236 ~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~-~V~~ 313 (1398)
...++..+-||.+.|+.+.|.++|+.|.+|+. |-.|..||++..+.. + ..+..|.. .-..
T Consensus 239 ---------~~~pl~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~p----v-----~~L~rhv~~TNQR 300 (406)
T KOG2919|consen 239 ---------GRRPLQLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDP----V-----YALERHVGDTNQR 300 (406)
T ss_pred ---------CCCceeeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccch----h-----hhhhhhccCccce
Confidence 56778888999999999999999999999875 678999999986541 1 25556655 3344
Q ss_pred EEEc----CCEEEEEeCCCcEEEEcC-C-CceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 314 CCLT----DSFIITAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 314 l~~s----~~~l~sgs~Dg~i~vWd~-~-g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
+.|. ++.|++|+.||.|++||+ + |..+..+..+.. .+..++++|--.+++|++..
T Consensus 301 I~FDld~~~~~LasG~tdG~V~vwdlk~~gn~~sv~~~~sd-~vNgvslnP~mpilatssGq 361 (406)
T KOG2919|consen 301 ILFDLDPKGEILASGDTDGSVRVWDLKDLGNEVSVTGNYSD-TVNGVSLNPIMPILATSSGQ 361 (406)
T ss_pred EEEecCCCCceeeccCCCccEEEEecCCCCCcccccccccc-cccceecCcccceeeeccCc
Confidence 5554 689999999999999999 3 777788888877 69999999998888887754
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.61 E-value=2.4e-15 Score=185.10 Aligned_cols=289 Identities=17% Similarity=0.320 Sum_probs=206.5
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-----------CCcEEEEEC--CCC----eEEEEEEeeeCccEEEEEEeccccccCCC
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDL--EAG----TLIRPFQVFHGIRLHGISCNFINCTEGSV 83 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~-----------dg~I~Iwd~--~tg----~~l~~~~~~~~~~V~~i~fs~~~~~~~pd 83 (1398)
..++|+ |+ +-.++|+|. +.++-||.+ .+. +.+..+.. .++-+.++|. +.
T Consensus 10 a~~awS--p~---~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~dlk~~~s~~s--~~rF~kL~W~-------~~ 75 (1049)
T KOG0307|consen 10 ATFAWS--PA---SPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESSDLKPVGSLQS--SNRFNKLAWG-------SY 75 (1049)
T ss_pred ceEEec--CC---CchhhHHHhhhhccccccccccccceeeecccCccccccccccccc--cccceeeeec-------cc
Confidence 356788 87 123666653 234555544 333 34555553 3478899998 44
Q ss_pred CccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEE
Q 000602 84 STRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1398)
Q Consensus 84 g~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vW 162 (1398)
|.+...+||.+. ||.|.+||..... .+. ....+.+...|++.|..+.|+++ .+.+||+|+.||.|.||
T Consensus 76 g~~~~GlIaGG~edG~I~ly~p~~~~-~~~--------~~~~la~~~~h~G~V~gLDfN~~--q~nlLASGa~~geI~iW 144 (1049)
T KOG0307|consen 76 GSHSHGLIAGGLEDGNIVLYDPASII-ANA--------SEEVLATKSKHTGPVLGLDFNPF--QGNLLASGADDGEILIW 144 (1049)
T ss_pred CCCccceeeccccCCceEEecchhhc-cCc--------chHHHhhhcccCCceeeeecccc--CCceeeccCCCCcEEEe
Confidence 421123566555 8999999987521 011 25677788899999999999992 44599999999999999
Q ss_pred EcCCCeEEEEEccC-CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 163 DISNSSIILEVHSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 163 d~~~~~~~~~l~~~-~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
|+.+.+........ ....+.++.| +-.....|++++.+|.+.|||++
T Consensus 145 Dlnn~~tP~~~~~~~~~~eI~~lsW--NrkvqhILAS~s~sg~~~iWDlr------------------------------ 192 (1049)
T KOG0307|consen 145 DLNKPETPFTPGSQAPPSEIKCLSW--NRKVSHILASGSPSGRAVIWDLR------------------------------ 192 (1049)
T ss_pred ccCCcCCCCCCCCCCCcccceEecc--chhhhHHhhccCCCCCceecccc------------------------------
Confidence 99875543333211 1223444443 22345678999999999999999
Q ss_pred cccceeEEEEEeCccC--CEEEEEEcCCC-CEEEEEECCC---eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEE
Q 000602 242 QQHTAVNLFRLVGHEG--SIFRIEWSSCG-SKLVSVSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC 315 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~--~I~~vafspdg-~~LaS~s~Dg---~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~ 315 (1398)
..+++..+..|.+ .+..|+|+|+. ..|+++++|. .|.+||++..... .+ .+.+|...|.++.
T Consensus 193 ---~~~pii~ls~~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP----~k-----~~~~H~~Gilsls 260 (1049)
T KOG0307|consen 193 ---KKKPIIKLSDTPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSP----LK-----ILEGHQRGILSLS 260 (1049)
T ss_pred ---CCCcccccccCCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCc----hh-----hhcccccceeeec
Confidence 3344545544443 47789999987 4566766653 6899999875431 22 7789999999999
Q ss_pred Ec---CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCC-EEEEEEcCCcEEEEEcCC
Q 000602 316 LT---DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 316 ~s---~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~latgg~Dg~I~iwdl~~ 379 (1398)
|+ +.+++|++.|+.+.+|+. +++.+..+..... .+..+.|+|... .++.++.||.|-|+.+.+
T Consensus 261 Wc~~D~~lllSsgkD~~ii~wN~~tgEvl~~~p~~~n-W~fdv~w~pr~P~~~A~asfdgkI~I~sl~~ 328 (1049)
T KOG0307|consen 261 WCPQDPRLLLSSGKDNRIICWNPNTGEVLGELPAQGN-WCFDVQWCPRNPSVMAAASFDGKISIYSLQG 328 (1049)
T ss_pred cCCCCchhhhcccCCCCeeEecCCCceEeeecCCCCc-ceeeeeecCCCcchhhhheeccceeeeeeec
Confidence 98 489999999999999999 8999999988655 588899998765 888999999999999954
|
|
| >KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown] | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.9e-14 Score=148.68 Aligned_cols=270 Identities=13% Similarity=0.169 Sum_probs=196.3
Q ss_pred CCcEEEEeCCcCe----------eccceEEEEEEecCCCCCCCCEEEEEeC--------CcEEEEECCCC---------e
Q 000602 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGSG--------SQVLLYDLEAG---------T 55 (1398)
Q Consensus 3 D~tv~iWdl~~~~----------h~~~Vtalafs~~pd~~~~g~lLaag~d--------g~I~Iwd~~tg---------~ 55 (1398)
|+-|.+-++..+. |.+.|..++-+ |- ..++|++..+ ..+.||.+... +
T Consensus 39 dNqVhll~~d~e~s~l~skvf~h~agEvw~las~--P~---d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~~~tlE 113 (370)
T KOG1007|consen 39 DNQVHLLRLDSEGSELLSKVFFHHAGEVWDLASS--PF---DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSNSSTLE 113 (370)
T ss_pred cceeEEEEecCccchhhhhhhhcCCcceehhhcC--CC---CCceEEEEEeccCCCcceeeEEEEecccccCccccchhh
Confidence 5556666666543 67889999988 75 3677777653 24789987532 3
Q ss_pred EEEEEEe-eeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCc
Q 000602 56 LIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW 134 (1398)
Q Consensus 56 ~l~~~~~-~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~ 134 (1398)
++..+.. +.+ +|.++.|. |++ ..+++-.+..|.+|+++..... .+ --+...-.+|...
T Consensus 114 ~v~~Ldteavg-~i~cvew~-------Pns----~klasm~dn~i~l~~l~ess~~-va--------ev~ss~s~e~~~~ 172 (370)
T KOG1007|consen 114 CVASLDTEAVG-KINCVEWE-------PNS----DKLASMDDNNIVLWSLDESSKI-VA--------EVLSSESAEMRHS 172 (370)
T ss_pred HhhcCCHHHhC-ceeeEEEc-------CCC----CeeEEeccCceEEEEcccCcch-he--------eecccccccccce
Confidence 3444442 234 79999999 887 6888888999999999853310 00 0011111236778
Q ss_pred EEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCC-cEEEEEECCCeEEEEEcccC
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~-~~lasgs~dg~I~vWd~~~~ 213 (1398)
.++-+|+|. .++..+++. .|+++..||+++......+...++..+..+.| +|+. .+|++++.||.|++||.+
T Consensus 173 ftsg~WspH-Hdgnqv~tt-~d~tl~~~D~RT~~~~~sI~dAHgq~vrdlDf---Npnkq~~lvt~gDdgyvriWD~R-- 245 (370)
T KOG1007|consen 173 FTSGAWSPH-HDGNQVATT-SDSTLQFWDLRTMKKNNSIEDAHGQRVRDLDF---NPNKQHILVTCGDDGYVRIWDTR-- 245 (370)
T ss_pred ecccccCCC-CccceEEEe-CCCcEEEEEccchhhhcchhhhhcceeeeccC---CCCceEEEEEcCCCccEEEEecc--
Confidence 899999983 377888776 48999999999998888888777777888877 4544 468889999999999998
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCccc-
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWK- 291 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~- 291 (1398)
.+..+++.+.+|..+|++|.|+|.- ++++|++.|..|.+|....-...
T Consensus 246 ------------------------------~tk~pv~el~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~ 295 (370)
T KOG1007|consen 246 ------------------------------KTKFPVQELPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQ 295 (370)
T ss_pred ------------------------------CCCccccccCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccc
Confidence 3567889999999999999999954 57789999999999987643211
Q ss_pred ------------CCCCceEee------eeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC
Q 000602 292 ------------DSDSIEEVG------SSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 292 ------------~~~~~~~i~------~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~ 335 (1398)
..+..+..+ ..++..|...|++++|+ |=.|++-+.||.+.|=.+
T Consensus 296 qi~~~~dese~e~~dseer~kpL~dg~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V 360 (370)
T KOG1007|consen 296 QIEFEDDESESEDEDSEERVKPLQDGQLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSV 360 (370)
T ss_pred ccccccccccCcchhhHHhcccccccccccccccccceEEEeeccCCCeeEEEeccCceEEeecC
Confidence 000001111 03667899999999998 568899999999988665
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.59 E-value=4.1e-13 Score=151.80 Aligned_cols=272 Identities=9% Similarity=0.098 Sum_probs=183.9
Q ss_pred eeccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 15 QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 15 ~h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
.|..-|.|+.++ .. ...+.+++|..+.+|.-.+......+...+. -|....+ +.+... ..|++-+.+++++
T Consensus 12 r~~e~vc~v~w~--~~----eei~~~~dDh~~~~~~~~~~~s~~~~~~p~d-f~pt~~h-~~~rs~-~~g~~~d~~~i~s 82 (737)
T KOG1524|consen 12 RNSEKVCCVDWS--SN----EEIYFVSDDHQIFKWSDVSRDSVEVAKLPDD-FVPTDMH-LGGRSS-GGGKGSDTLLICS 82 (737)
T ss_pred ccceeEEeeccc--cc----ceEEEeccCceEEEeecccchhhhhhhCCcc-cCCcccc-cccccc-CCCCCcceEEEEc
Confidence 467778899998 65 6777888887777776444332222222222 1111111 111111 1122235778888
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.||.+.|.+-. ++..+....|.+.|.+-.|+| +|.-|+|++.||.|++|.-... ...++
T Consensus 83 ~DGkf~il~k~----------------~rVE~sv~AH~~A~~~gRW~~---dGtgLlt~GEDG~iKiWSrsGM-LRStl- 141 (737)
T KOG1524|consen 83 NDGRFVILNKS----------------ARVERSISAHAAAISSGRWSP---DGAGLLTAGEDGVIKIWSRSGM-LRSTV- 141 (737)
T ss_pred CCceEEEeccc----------------chhhhhhhhhhhhhhhcccCC---CCceeeeecCCceEEEEeccch-HHHHH-
Confidence 89999998754 455667789999999999999 9999999999999999986432 21111
Q ss_pred cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG 254 (1398)
Q Consensus 175 ~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g 254 (1398)
......+++++| .|+...++-+. -+.+.|=.+. ....+...+.
T Consensus 142 ~Q~~~~v~c~~W---~p~S~~vl~c~-g~h~~IKpL~---------------------------------~n~k~i~WkA 184 (737)
T KOG1524|consen 142 VQNEESIRCARW---APNSNSIVFCQ-GGHISIKPLA---------------------------------ANSKIIRWRA 184 (737)
T ss_pred hhcCceeEEEEE---CCCCCceEEec-CCeEEEeecc---------------------------------cccceeEEec
Confidence 223345788887 34444333322 2445444444 3344567889
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEc
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd 334 (1398)
|.+-|.++.|++....++||++|-..++||-..... ..-..|..+|++++|.+..++.-+.-.++|
T Consensus 185 HDGiiL~~~W~~~s~lI~sgGED~kfKvWD~~G~~L-----------f~S~~~ey~ITSva~npd~~~~v~S~nt~R--- 250 (737)
T KOG1524|consen 185 HDGLVLSLSWSTQSNIIASGGEDFRFKIWDAQGANL-----------FTSAAEEYAITSVAFNPEKDYLLWSYNTAR--- 250 (737)
T ss_pred cCcEEEEeecCccccceeecCCceeEEeecccCccc-----------ccCChhccceeeeeeccccceeeeeeeeee---
Confidence 999999999999999999999999999999876544 366789999999999965444333334444
Q ss_pred CCCceEEEEec-ccCccEEEEEEcCCCCEEEEEEcCCcEEEEE
Q 000602 335 SDGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 335 ~~g~~l~~l~~-h~~~~V~sl~~spdg~~latgg~Dg~I~iwd 376 (1398)
|.. ..+ .|..++|++||..++.|...|.+.+=.
T Consensus 251 --------~~~p~~G-SifnlsWS~DGTQ~a~gt~~G~v~~A~ 284 (737)
T KOG1524|consen 251 --------FSSPRVG-SIFNLSWSADGTQATCGTSTGQLIVAY 284 (737)
T ss_pred --------ecCCCcc-ceEEEEEcCCCceeeccccCceEEEee
Confidence 222 334 699999999999999999999876543
|
|
| >KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.58 E-value=2.8e-13 Score=145.08 Aligned_cols=260 Identities=17% Similarity=0.240 Sum_probs=180.5
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc-CCCcEEEEEEEee--
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKV-- 143 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~-- 143 (1398)
-.++..|+ |||. -+|+...|..+.+|++......... +.....+....++- ..+.|.+-+|=+.
T Consensus 51 f~kgckWS-------PDGS---ciL~~sedn~l~~~nlP~dlys~~~---~~~~~~~~~~~~r~~eg~tvydy~wYs~M~ 117 (406)
T KOG2919|consen 51 FLKGCKWS-------PDGS---CILSLSEDNCLNCWNLPFDLYSKKA---DGPLNFSKHLSYRYQEGETVYDYCWYSRMK 117 (406)
T ss_pred hhccceeC-------CCCc---eEEeecccCeeeEEecChhhcccCC---CCccccccceeEEeccCCEEEEEEeeeccc
Confidence 46677888 9993 7777778999999999754311111 00111111111111 2356777777421
Q ss_pred --cCCCcEEEEEECCCeEEEEEcCCCeEEEEEccC----CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc-cCCcc
Q 000602 144 --CNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVA 216 (1398)
Q Consensus 144 --~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~----~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~-~~~~~ 216 (1398)
.++..++|+.+.|.-|++||.-+|+....+..- +-....++.| ++||..|++|. ...|+++|.. .+..-
T Consensus 118 s~qP~t~l~a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~F---s~DGeqlfaGy-krcirvFdt~RpGr~c 193 (406)
T KOG2919|consen 118 SDQPSTNLFAVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQF---SPDGEQLFAGY-KRCIRVFDTSRPGRDC 193 (406)
T ss_pred cCCCccceeeeccccCceeeeeccccccccchhhhhhHHhhhhheeEEe---cCCCCeEeecc-cceEEEeeccCCCCCC
Confidence 126678999999999999999999887666521 1123456666 89999999885 5789999984 11100
Q ss_pred ccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCC
Q 000602 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1398)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~ 295 (1398)
+. -....+--.+..+.|.+++|+| +.+.++.++...++-|+.-.....
T Consensus 194 ~v--------------------------y~t~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~p----- 242 (406)
T KOG2919|consen 194 PV--------------------------YTTVTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRP----- 242 (406)
T ss_pred cc--------------------------hhhhhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCc-----
Confidence 00 0000111234578899999999 456899999999999998777655
Q ss_pred ceEeeeeEEecCCccEEEEEEc--CCEEEEEeC-CCcEEEEcC--CCceEEEEecccCccEEEEEE--cCCCCEEEEEEc
Q 000602 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--DSLSSLLVTAGF 368 (1398)
Q Consensus 296 ~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~-Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~~--spdg~~latgg~ 368 (1398)
+ ..+.+|.+.|+.++|. ++.|++|.. |-.|..||+ ...++..+..|.+..=..|-| .|++++|++|+.
T Consensus 243 l-----~llggh~gGvThL~~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~t 317 (406)
T KOG2919|consen 243 L-----QLLGGHGGGVTHLQWCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKGEILASGDT 317 (406)
T ss_pred e-----eeecccCCCeeeEEeccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCCceeeccCC
Confidence 2 3788999999999998 688888875 678999999 677788888876633344544 789999999999
Q ss_pred CCcEEEEEcCC
Q 000602 369 DSAIKVHQFQA 379 (1398)
Q Consensus 369 Dg~I~iwdl~~ 379 (1398)
||.|++||+++
T Consensus 318 dG~V~vwdlk~ 328 (406)
T KOG2919|consen 318 DGSVRVWDLKD 328 (406)
T ss_pred CccEEEEecCC
Confidence 99999999953
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.4e-14 Score=151.16 Aligned_cols=296 Identities=12% Similarity=0.138 Sum_probs=194.0
Q ss_pred eeccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 15 QYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 15 ~h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
.|.+.|+++.|- .+ .+|.+|. -|.|++|++.+.+.+..++.+.+..|..+..- |++ .+..-
T Consensus 12 p~~~~v~s~~fq--a~-----~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~-------p~d----~l~tq 73 (323)
T KOG0322|consen 12 PHSSSVTSVLFQ--AN-----ERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSI-------PND----SLDTQ 73 (323)
T ss_pred cccchheehhhc--cc-----hhhhcccccceEEEEEeecCccchhhhhhccceeeceeec-------CCc----chhhc
Confidence 367889999997 55 4688887 69999999999998888887777789999887 764 45555
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec--CCC----cEEEEEEC--CCeEEEEEcC
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC--NGN----RSLAIGCS--DNSIRVWDIS 165 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~--~dg----~~Latgs~--Dg~V~vWd~~ 165 (1398)
+.|..+.+|++.... +.. .|.-.++++.|.+++ ..+ ..++.-+. |- +.+-|..
T Consensus 74 gRd~~L~lw~ia~s~-------------~i~-----i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde-~h~~D~g 134 (323)
T KOG0322|consen 74 GRDPLLILWTIAYSA-------------FIS-----IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDE-THKQDGG 134 (323)
T ss_pred CCCceEEEEEccCcc-------------eEE-----EeeeeccccccccceeccCCCcchhheecCCcccch-hhhhccC
Confidence 559999999998522 222 233445566665421 011 11111110 11 1222221
Q ss_pred CCeEEEEEccC---CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000602 166 NSSIILEVHSP---ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1398)
Q Consensus 166 ~~~~~~~l~~~---~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1398)
....+.....+ ....+.+..+-.......++++|-.+|.+.+||+.++.. +.+.
T Consensus 135 ~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~-----------------------~~~~ 191 (323)
T KOG0322|consen 135 DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDK-----------------------IIQL 191 (323)
T ss_pred ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCce-----------------------eecc
Confidence 11111111111 111223322111122234678899999999999984311 1111
Q ss_pred ccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCE
Q 000602 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSF 320 (1398)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~ 320 (1398)
....+.......|+.+|.++.|.+.-..=++++.+..+..|++...... .+ ++ ....-..-.|..+... ++.
T Consensus 192 ~~~~kv~~~~ash~qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gs----lq-~~-~e~~lknpGv~gvrIRpD~KI 265 (323)
T KOG0322|consen 192 PQSSKVESPNASHKQPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGS----LQ-IR-KEITLKNPGVSGVRIRPDGKI 265 (323)
T ss_pred ccccccccchhhccCcceeeeechhhcCCcCCCccccceeeeeccccCc----cc-cc-ceEEecCCCccceEEccCCcE
Confidence 1233445566789999999999987777788998889999998764221 11 11 0111112234445554 689
Q ss_pred EEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 321 l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
++|+|.|+.+|||.. +.+++..++.|.+ +|.+++|+|+...+|.++.|++|-+|++
T Consensus 266 lATAGWD~RiRVyswrtl~pLAVLkyHsa-gvn~vAfspd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 266 LATAGWDHRIRVYSWRTLNPLAVLKYHSA-GVNAVAFSPDCELMAAASKDARISLWKL 322 (323)
T ss_pred EeecccCCcEEEEEeccCCchhhhhhhhc-ceeEEEeCCCCchhhhccCCceEEeeec
Confidence 999999999999999 8999999999998 7999999999999999999999999986
|
|
| >KOG1188 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.57 E-value=9.1e-14 Score=150.38 Aligned_cols=286 Identities=14% Similarity=0.193 Sum_probs=183.7
Q ss_pred cEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC--CCCEE
Q 000602 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS--CGSKL 271 (1398)
Q Consensus 194 ~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp--dg~~L 271 (1398)
..+|++-..|.|+++|.. +++.+..+++|...++.++|.. ....+
T Consensus 41 ~~vav~lSngsv~lyd~~---------------------------------tg~~l~~fk~~~~~~N~vrf~~~ds~h~v 87 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKG---------------------------------TGQLLEEFKGPPATTNGVRFISCDSPHGV 87 (376)
T ss_pred eeEEEEecCCeEEEEecc---------------------------------chhhhheecCCCCcccceEEecCCCCCee
Confidence 578889999999999998 6778889999999999999987 45679
Q ss_pred EEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC-ccEEEEEEc--CCEEEEEe----CCCcEEEEcC-CC-ceEEE
Q 000602 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-ARVWDCCLT--DSFIITAG----EDCTCRVWGS-DG-KQLKM 342 (1398)
Q Consensus 272 aS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~-~~V~~l~~s--~~~l~sgs----~Dg~i~vWd~-~g-~~l~~ 342 (1398)
.||+.||+||+||++..... .+ ....+|. .+..+++.. ++.+++|. .|..+.+||+ .. +.+..
T Consensus 88 ~s~ssDG~Vr~wD~Rs~~e~----a~----~~~~~~~~~~f~~ld~nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~ 159 (376)
T KOG1188|consen 88 ISCSSDGTVRLWDIRSQAES----AR----ISWTQQSGTPFICLDLNCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQ 159 (376)
T ss_pred EEeccCCeEEEEEeecchhh----hh----eeccCCCCCcceEeeccCcCCeEEeccccccCceEEEEEEeccccchhhh
Confidence 99999999999999987552 11 1333444 345566664 46666664 3567999999 33 33555
Q ss_pred E-ecccCccEEEEEEcCCC-CEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCC
Q 000602 343 I-KEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSE 420 (1398)
Q Consensus 343 l-~~h~~~~V~sl~~spdg-~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 420 (1398)
+ ..|.. -|+++.|+|+. +.|++|+.||.|.++|++... .+..+. ..-.+..
T Consensus 160 ~~eSH~D-DVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~--------------EeDaL~------------~viN~~s 212 (376)
T KOG1188|consen 160 LNESHND-DVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDN--------------EEDALL------------HVINHGS 212 (376)
T ss_pred hhhhccC-cceeEEecCCCCCeEEeecccceEEeeecCCCc--------------chhhHH------------Hhhcccc
Confidence 4 45666 49999999964 599999999999999996431 000000 0012334
Q ss_pred cEEEEEEecCC--eEEEEEcCCcEEEEEeecCCCceeEEEEeecC------CccEEEEeccCCCCCCcCCCCcEEEEEeC
Q 000602 421 YVRCLHLTSED--TLYIATNHGYLYHTKLCDMDSVNWNKILQVSE------GMPIICMDLLSNEPKYPCGIDDWVALGDG 492 (1398)
Q Consensus 421 ~V~~lafs~dg--~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~------~~~i~~l~~~~~~~~~s~~~~~~la~gs~ 492 (1398)
.|.++.|..++ ++++.+..+.+..|.+.+.....|........ ..--+.++. .++.+..+.+++..
T Consensus 213 SI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~------~~~~~~~~~~l~g~ 286 (376)
T KOG1188|consen 213 SIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINE------HSPGDKDTCALAGT 286 (376)
T ss_pred eeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHHhhhhhhheeec------ccCCCcceEEEecc
Confidence 68999999998 88888888888877776655444422221110 001111222 12344556665554
Q ss_pred -CCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCC
Q 000602 493 -KGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDP 555 (1398)
Q Consensus 493 -dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~ 555 (1398)
.+...++.+..............+..+ +..++.. .+|...+..++|||.||.+.+|..++.
T Consensus 287 ~~n~~~~~~~~~~~s~~~~~~~a~l~g~-~~eiVR~-i~~~~~~~~l~TGGEDG~l~~Wk~~da 348 (376)
T KOG1188|consen 287 DSNKGTIFPLVDTSSGSLLTEPAILQGG-HEEIVRD-ILFDVKNDVLYTGGEDGLLQAWKVEDA 348 (376)
T ss_pred ccCceeEEEeeecccccccCccccccCC-cHHHHHH-HhhhcccceeeccCCCceEEEEecCCc
Confidence 677777766531111111111111221 1122221 234456778999999999999996543
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.1e-13 Score=148.32 Aligned_cols=249 Identities=18% Similarity=0.273 Sum_probs=174.4
Q ss_pred eeCccEEEEEEeccccccCCCCccceeEEEE----EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEE
Q 000602 63 FHGIRLHGISCNFINCTEGSVSTRVTFEVAL----FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1398)
Q Consensus 63 ~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~----~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v 138 (1398)
.+..+|.-+.|....|...| .+||+ +|+|...+.-+..-+. --+..-...||+++|.++
T Consensus 25 YddIrVs~~tWDS~fcavNP------kfiAvi~easgGgaf~ViPl~k~Gr-----------~d~~~P~v~GHt~~vLDi 87 (472)
T KOG0303|consen 25 YDDIRVSRVTWDSSFCAVNP------KFVAVIIEASGGGAFLVIPLVKTGR-----------MDASYPLVCGHTAPVLDI 87 (472)
T ss_pred hcceeeeeeeccccccccCC------ceEEEEEecCCCcceeecccccccc-----------cCCCCCCccCcccccccc
Confidence 34556777777655555555 35554 2355666666543110 012233567999999999
Q ss_pred EEEeecCCCcEEEEEECCCeEEEEEcCCCeE-------EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-------ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~-------~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
+|.|+ +...||+|+.|.+|.||.+..+.. +..+.+|.+. +..+.||+. ..+.|++++.|++|.+|++.
T Consensus 88 ~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rr-Vg~V~wHPt--A~NVLlsag~Dn~v~iWnv~ 162 (472)
T KOG0303|consen 88 DWCPF--NDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRR-VGLVQWHPT--APNVLLSAGSDNTVSIWNVG 162 (472)
T ss_pred ccCcc--CCceeecCCCCceEEEEECCCcccccCcccceEEEeeccee-EEEEeeccc--chhhHhhccCCceEEEEecc
Confidence 99995 677899999999999999976433 4556666654 556677654 35688999999999999998
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc
Q 000602 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1398)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~ 291 (1398)
++..+.++. |.+.|.++.|+.||.+|++.+.|+.|||||.++++.
T Consensus 163 ---------------------------------tgeali~l~-hpd~i~S~sfn~dGs~l~TtckDKkvRv~dpr~~~~- 207 (472)
T KOG0303|consen 163 ---------------------------------TGEALITLD-HPDMVYSMSFNRDGSLLCTTCKDKKVRVIDPRRGTV- 207 (472)
T ss_pred ---------------------------------CCceeeecC-CCCeEEEEEeccCCceeeeecccceeEEEcCCCCcE-
Confidence 566666666 999999999999999999999999999999999876
Q ss_pred CCCCceEeeeeEEecCCcc-EEEEEEc-CCEEEEEe----CCCcEEEEcC-C-Cce--EEEEecccCccEEEEEEcCCCC
Q 000602 292 DSDSIEEVGSSVLYGHNAR-VWDCCLT-DSFIITAG----EDCTCRVWGS-D-GKQ--LKMIKEHIGRGIWRCLYDSLSS 361 (1398)
Q Consensus 292 ~~~~~~~i~~~~~~gh~~~-V~~l~~s-~~~l~sgs----~Dg~i~vWd~-~-g~~--l~~l~~h~~~~V~sl~~spdg~ 361 (1398)
+. ...+|.+. -..+.|- ...++|.+ .+..+-+||. + .++ +..+.... +|.---|.||.+
T Consensus 208 ----v~-----e~~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~~~~elDtSn--Gvl~PFyD~dt~ 276 (472)
T KOG0303|consen 208 ----VS-----EGVAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPIALQELDTSN--GVLLPFYDPDTS 276 (472)
T ss_pred ----ee-----ecccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcceeEEeccCC--ceEEeeecCCCC
Confidence 22 33566552 2333443 33355555 4678999998 2 222 33444333 466566788888
Q ss_pred EEEEEE-cCCcEEEEEcCC
Q 000602 362 LLVTAG-FDSAIKVHQFQA 379 (1398)
Q Consensus 362 ~latgg-~Dg~I~iwdl~~ 379 (1398)
.|..+| .|+.||.|.++.
T Consensus 277 ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 277 IVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred EEEEEecCCcceEEEEecC
Confidence 776555 599999999954
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.55 E-value=1.1e-12 Score=138.79 Aligned_cols=261 Identities=15% Similarity=0.196 Sum_probs=182.3
Q ss_pred CeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-----CCeEEEEEecCCCCCCCCCCCcccccceeeeec
Q 000602 54 GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1398)
Q Consensus 54 g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-----d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l 128 (1398)
++.+.++.. ...+.++.|+.. |+. ...||+++ .+.|.|..+.... + .......
T Consensus 35 ~~eiy~Y~a--p~~lya~~Ws~~-----~~~---~~rla~gS~~Ee~~Nkvqiv~ld~~s--~---------e~~~~a~- 92 (364)
T KOG0290|consen 35 RKEIYTYNA--PWPLYAMNWSVR-----PDK---KFRLAVGSFIEEYNNKVQIVQLDEDS--G---------ELVEDAN- 92 (364)
T ss_pred cceEEEecC--CCceeeeccccC-----CCc---ceeEEEeeeccccCCeeEEEEEccCC--C---------ceeccCC-
Confidence 344555554 346899999843 554 26777766 4788888887432 0 0112222
Q ss_pred ccCCCcEEEEEEEeecC--CCcEEEEEECCCeEEEEEcCC--CeEE-E-EE----ccCCcceEEEEEeecCCCCCcEEEE
Q 000602 129 PRLSHWVFDVCFLKVCN--GNRSLAIGCSDNSIRVWDISN--SSII-L-EV----HSPERCLLYSMKLWGDNLEALRIAS 198 (1398)
Q Consensus 129 ~~h~~~V~~v~fsp~~~--dg~~Latgs~Dg~V~vWd~~~--~~~~-~-~l----~~~~~~~~~s~~~~~~s~d~~~las 198 (1398)
-.|.-+++.+.|.|... .-++|||. +-.+|+|.+.. .+.. . .+ .......+.+..| +..+..+|.+
T Consensus 93 fd~~YP~tK~~wiPd~~g~~pdlLATs--~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDW--ne~dp~~igt 168 (364)
T KOG0290|consen 93 FDHPYPVTKLMWIPDSKGVYPDLLATS--SDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDW--NEVDPNLIGT 168 (364)
T ss_pred CCCCCCccceEecCCccccCcchhhcc--cCeEEEEeccCcCCceehhhhhccCcccccCCccccccc--ccCCcceeEe
Confidence 35888999999999220 11366665 34799999873 2221 1 11 1222334555554 3456789999
Q ss_pred EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECC
Q 000602 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDD 277 (1398)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~D 277 (1398)
.+.|-+..|||++.+ ..+.....+..|...|+.|+|...+ +.+||++.|
T Consensus 169 SSiDTTCTiWdie~~------------------------------~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaD 218 (364)
T KOG0290|consen 169 SSIDTTCTIWDIETG------------------------------VSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGAD 218 (364)
T ss_pred ecccCeEEEEEEeec------------------------------cccceeeEEEecCcceeEEEeccCccceEEEecCC
Confidence 999999999999821 0233455678899999999999865 578999999
Q ss_pred CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCC-CcEEEEcC--CCceEEEEecccCccE
Q 000602 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGED-CTCRVWGS--DGKQLKMIKEHIGRGI 351 (1398)
Q Consensus 278 g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~D-g~i~vWd~--~g~~l~~l~~h~~~~V 351 (1398)
|+||++|++..... ..+- .-.....+...++|+ +++++|-..| ..|.|-|+ ...++..+++|.+ .|
T Consensus 219 GSvRmFDLR~leHS-----TIIY--E~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a-~V 290 (364)
T KOG0290|consen 219 GSVRMFDLRSLEHS-----TIIY--EDPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQA-SV 290 (364)
T ss_pred CcEEEEEecccccc-----eEEe--cCCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCcceehhhcCcc-cc
Confidence 99999999986551 1110 111113567788887 5788888777 46888998 6788999999999 69
Q ss_pred EEEEEcCCC-CEEEEEEcCCcEEEEEcC
Q 000602 352 WRCLYDSLS-SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 352 ~sl~~spdg-~~latgg~Dg~I~iwdl~ 378 (1398)
.+++|.|.. ..|.|+|.|..+.|||+.
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWDl~ 318 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWDLQ 318 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEecc
Confidence 999999965 589999999999999995
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=1.4e-14 Score=170.90 Aligned_cols=268 Identities=16% Similarity=0.214 Sum_probs=201.5
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|...|.|+.|. .. |+++++|+ |..++||..+++.+++..++|.+ .|..++.+ .+. .++++.
T Consensus 189 H~naVyca~fD--rt----g~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~-ditdlavs-------~~n----~~iaaa 250 (1113)
T KOG0644|consen 189 HRNAVYCAIFD--RT----GRYIITGSDDRLVKIWSMETARCLASCRGHSG-DITDLAVS-------SNN----TMIAAA 250 (1113)
T ss_pred hhhheeeeeec--cc----cceEeecCccceeeeeeccchhhhccCCCCcc-ccchhccc-------hhh----hhhhhc
Confidence 67789999999 55 89999999 59999999999999999999988 79999988 443 455555
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
+ |..|++|.+.. ..++..+.||++.|++++|+| .++.+.||++++||.+- ..+...
T Consensus 251 S~D~vIrvWrl~~---------------~~pvsvLrghtgavtaiafsP-------~~sss~dgt~~~wd~r~-~~~~y~ 307 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPD---------------GAPVSVLRGHTGAVTAIAFSP-------RASSSDDGTCRIWDARL-EPRIYV 307 (1113)
T ss_pred ccCceEEEEecCC---------------CchHHHHhccccceeeeccCc-------cccCCCCCceEeccccc-cccccC
Confidence 5 89999999986 567888999999999999999 45788999999999871 111111
Q ss_pred ----ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE
Q 000602 174 ----HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL 249 (1398)
Q Consensus 174 ----~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~ 249 (1398)
....+..+.++.+ ...+..+++|+.|++-..|...
T Consensus 308 prp~~~~~~~~~~s~~~---~~~~~~f~Tgs~d~ea~n~e~~-------------------------------------- 346 (1113)
T KOG0644|consen 308 PRPLKFTEKDLVDSILF---ENNGDRFLTGSRDGEARNHEFE-------------------------------------- 346 (1113)
T ss_pred CCCCCcccccceeeeec---cccccccccccCCcccccchhh--------------------------------------
Confidence 1222333444444 3456778889988888888765
Q ss_pred EEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEe
Q 000602 250 FRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAG 325 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs 325 (1398)
.+..|...+.-+.++.|- .+.+++-.+-.+.+|++.++.. . ..+.+|...+..+.++ +....+++
T Consensus 347 -~l~~~~~~lif~t~ssd~~~~~~~ar~~~~~~vwnl~~g~l-----~-----H~l~ghsd~~yvLd~Hpfn~ri~msag 415 (1113)
T KOG0644|consen 347 -QLAWRSNLLIFVTRSSDLSSIVVTARNDHRLCVWNLYTGQL-----L-----HNLMGHSDEVYVLDVHPFNPRIAMSAG 415 (1113)
T ss_pred -HhhhhccceEEEeccccccccceeeeeeeEeeeeecccchh-----h-----hhhcccccceeeeeecCCCcHhhhhcc
Confidence 011122222222222222 4566677778899999999866 2 3778999999999988 46778999
Q ss_pred CCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 326 EDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 326 ~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.||...|||+ .|.+++.+...++ .+...+|+++|..++....-|.+.|...
T Consensus 416 ~dgst~iwdi~eg~pik~y~~gh~-kl~d~kFSqdgts~~lsd~hgql~i~g~ 467 (1113)
T KOG0644|consen 416 YDGSTIIWDIWEGIPIKHYFIGHG-KLVDGKFSQDGTSIALSDDHGQLYILGT 467 (1113)
T ss_pred CCCceEeeecccCCcceeeecccc-eeeccccCCCCceEecCCCCCceEEecc
Confidence 9999999999 8877776543344 3778899999999998888899999876
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.54 E-value=4.8e-13 Score=145.66 Aligned_cols=209 Identities=15% Similarity=0.243 Sum_probs=156.5
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC------CeEEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN------SSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~------~~~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
-+.+.+.+|.+.|+++.|+. ++++||+|+.|..+++|+++. .+++.....|+++.++++.| ......|
T Consensus 47 ~~qKD~~~H~GCiNAlqFS~---N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F---~~~N~~~ 120 (609)
T KOG4227|consen 47 FCQKDVREHTGCINALQFSH---NDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEF---DLENRFL 120 (609)
T ss_pred hhhhhhhhhccccceeeecc---CCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEE---ccCCeeE
Confidence 34456779999999999999 999999999999999999853 45666667788889999998 6677899
Q ss_pred EEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe--CccCCEEEEEEcCCCCEEEEE
Q 000602 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV--GHEGSIFRIEWSSCGSKLVSV 274 (1398)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~--gH~~~I~~vafspdg~~LaS~ 274 (1398)
++|..+++|.+.|+. +.+.+..+. ...+.|+.+..+|..+.|++.
T Consensus 121 ~SG~~~~~VI~HDiE---------------------------------t~qsi~V~~~~~~~~~VY~m~~~P~DN~~~~~ 167 (609)
T KOG4227|consen 121 YSGERWGTVIKHDIE---------------------------------TKQSIYVANENNNRGDVYHMDQHPTDNTLIVV 167 (609)
T ss_pred ecCCCcceeEeeecc---------------------------------cceeeeeecccCcccceeecccCCCCceEEEE
Confidence 999999999999998 344444432 233589999999999999999
Q ss_pred ECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcCC--CceEEEEecccC-
Q 000602 275 SDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSD--GKQLKMIKEHIG- 348 (1398)
Q Consensus 275 s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~~--g~~l~~l~~h~~- 348 (1398)
+.++.|.+||.+..... +.++ .+.........+.|+ |.+|+++++.+-+-+||.. ...+....+..+
T Consensus 168 t~~~~V~~~D~Rd~~~~----~~~~---~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L 240 (609)
T KOG4227|consen 168 TRAKLVSFIDNRDRQNP----ISLV---LPANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGL 240 (609)
T ss_pred ecCceEEEEeccCCCCC----Ccee---eecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccC
Confidence 99999999999886531 2222 233344556778887 5899999999999999983 222222221111
Q ss_pred --c--cEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 349 --R--GIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 349 --~--~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
. .-.++.|+|+|..+++--.-..-.+||+
T Consensus 241 ~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~ 273 (609)
T KOG4227|consen 241 PQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDF 273 (609)
T ss_pred cccchhhhheeeCCCCCeehhhhccCCCEEeee
Confidence 0 1246779999998877665555556666
|
|
| >KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown] | Back alignment and domain information |
|---|
Probab=99.53 E-value=3e-13 Score=142.98 Aligned_cols=246 Identities=16% Similarity=0.235 Sum_probs=168.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCC--CeE--EEEEE----eeeCccEEEEEEeccccccCCCCccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEA--GTL--IRPFQ----VFHGIRLHGISCNFINCTEGSVSTRV 87 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~t--g~~--l~~~~----~~~~~~V~~i~fs~~~~~~~pdg~~~ 87 (1398)
|..|++.+-|. |+..+...-|++.++..+|+|.+.. .+. ...+. .+...++++..|+. -+
T Consensus 95 ~~YP~tK~~wi--Pd~~g~~pdlLATs~D~LRlWri~~ee~~~~~~~~L~~~kns~~~aPlTSFDWne------~d---- 162 (364)
T KOG0290|consen 95 HPYPVTKLMWI--PDSKGVYPDLLATSSDFLRLWRIGDEESRVELQSVLNNNKNSEFCAPLTSFDWNE------VD---- 162 (364)
T ss_pred CCCCccceEec--CCccccCcchhhcccCeEEEEeccCcCCceehhhhhccCcccccCCccccccccc------CC----
Confidence 88999999999 9832222334444566899999873 221 11111 12234788888872 22
Q ss_pred eeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC
Q 000602 88 TFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 88 ~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
.++|.+++ |-+..|||++.+. .+.....|-.|...|.+++|+. ...+.+|+.+.||+||++|++.
T Consensus 163 p~~igtSSiDTTCTiWdie~~~------------~~~vkTQLIAHDKEV~DIaf~~--~s~~~FASvgaDGSvRmFDLR~ 228 (364)
T KOG0290|consen 163 PNLIGTSSIDTTCTIWDIETGV------------SGTVKTQLIAHDKEVYDIAFLK--GSRDVFASVGADGSVRMFDLRS 228 (364)
T ss_pred cceeEeecccCeEEEEEEeecc------------ccceeeEEEecCcceeEEEecc--CccceEEEecCCCcEEEEEecc
Confidence 25666666 9999999999742 1334445668999999999997 1346889999999999999987
Q ss_pred CeEEE-EEccCC-cceEEEEEeecCCCCCcEEEEEEC-CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000602 167 SSIIL-EVHSPE-RCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1398)
Q Consensus 167 ~~~~~-~l~~~~-~~~~~s~~~~~~s~d~~~lasgs~-dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1398)
.+.-. ..+.+. ...+.-+. +...|-.++|+-.. ...|.|.|++
T Consensus 229 leHSTIIYE~p~~~~pLlRLs--wnkqDpnymATf~~dS~~V~iLDiR-------------------------------- 274 (364)
T KOG0290|consen 229 LEHSTIIYEDPSPSTPLLRLS--WNKQDPNYMATFAMDSNKVVILDIR-------------------------------- 274 (364)
T ss_pred cccceEEecCCCCCCcceeec--cCcCCchHHhhhhcCCceEEEEEec--------------------------------
Confidence 55422 223333 22333333 34456677777444 4679999988
Q ss_pred cceeEEEEEeCccCCEEEEEEcCC-CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CC
Q 000602 244 HTAVNLFRLVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DS 319 (1398)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~vafspd-g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~ 319 (1398)
....++.++.+|.+.|++|+|.|. ...|+||++|..+.+||+.+..... ...|...+.-.+.|..+.|+ +.
T Consensus 275 ~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~-----~~dPilay~a~~EVNqi~Ws~~~~D 349 (364)
T KOG0290|consen 275 VPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQMPREN-----GEDPILAYTAGGEVNQIQWSSSQPD 349 (364)
T ss_pred CCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccccccC-----CCCchhhhhccceeeeeeecccCCC
Confidence 256788999999999999999995 4689999999999999998753310 01111333456789999997 57
Q ss_pred EEEEEeC
Q 000602 320 FIITAGE 326 (1398)
Q Consensus 320 ~l~sgs~ 326 (1398)
.|+.+..
T Consensus 350 wiai~~~ 356 (364)
T KOG0290|consen 350 WIAICFG 356 (364)
T ss_pred EEEEEec
Confidence 7777653
|
|
| >KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=99.53 E-value=1.3e-12 Score=144.46 Aligned_cols=265 Identities=16% Similarity=0.208 Sum_probs=178.6
Q ss_pred EeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEE
Q 000602 61 QVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC 139 (1398)
Q Consensus 61 ~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~ 139 (1398)
.-|...+|..+.|. +++. .+++++| |..|++|.+......+. ....+....|..|...|+++.
T Consensus 9 ~wH~~~pv~s~dfq-------~n~~---~~laT~G~D~~iriW~v~r~~~~~~------~~~V~y~s~Ls~H~~aVN~vR 72 (434)
T KOG1009|consen 9 SWHDHEPVYSVDFQ-------KNSL---NKLATAGGDKDIRIWKVNRSEPGGG------DMKVEYLSSLSRHTRAVNVVR 72 (434)
T ss_pred EecCCCceEEEEec-------cCcc---cceecccCccceeeeeeeecCCCCC------ceeEEEeecccCCcceeEEEE
Confidence 33555689999998 6652 3677766 99999999986442111 124677889999999999999
Q ss_pred EEeecCCCcEEEEEECCCeEEEEEcC--------C-----C--eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCe
Q 000602 140 FLKVCNGNRSLAIGCSDNSIRVWDIS--------N-----S--SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE 204 (1398)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~V~vWd~~--------~-----~--~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~ 204 (1398)
|+| +|.+||+|+.+|.|.+|... + . ..+......++.-+|.++| ++++..+++|+.|+.
T Consensus 73 f~p---~gelLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~W---s~d~~~l~s~s~dns 146 (434)
T KOG1009|consen 73 FSP---DGELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAW---SPDSNFLVSGSVDNS 146 (434)
T ss_pred EcC---CcCeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhc---cCCCceeeeeeccce
Confidence 999 99999999999999999876 2 1 1122222334455777777 789999999999999
Q ss_pred EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000602 205 IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 205 I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd 284 (1398)
+++||+. .++....+.+|...+..++|.|-++++++-+.|+..+.+.
T Consensus 147 ~~l~Dv~---------------------------------~G~l~~~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~ 193 (434)
T KOG1009|consen 147 VRLWDVH---------------------------------AGQLLAILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFS 193 (434)
T ss_pred EEEEEec---------------------------------cceeEeeccccccccceeecchhhhhhhhhccCcccceee
Confidence 9999998 5666777777777777777777777777777776555444
Q ss_pred cCCCccc------------------------------------------------------CCCC-ceE--------e-e
Q 000602 285 VRAEYWK------------------------------------------------------DSDS-IEE--------V-G 300 (1398)
Q Consensus 285 ~~~~~~~------------------------------------------------------~~~~-~~~--------i-~ 300 (1398)
+...+.. .+.. ... + .
T Consensus 194 ~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~r 273 (434)
T KOG1009|consen 194 AKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKR 273 (434)
T ss_pred eeeeeeeeeeeeeEeeecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccC
Confidence 4322211 0000 000 0 0
Q ss_pred e-eEEecCCccEEEEEEcC--------------------CEEEEEeCCCcEEEEcC-CCceEEEEe-cccCccEEEEEEc
Q 000602 301 S-SVLYGHNARVWDCCLTD--------------------SFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYD 357 (1398)
Q Consensus 301 ~-~~~~gh~~~V~~l~~s~--------------------~~l~sgs~Dg~i~vWd~-~g~~l~~l~-~h~~~~V~sl~~s 357 (1398)
| ..+.+.......+.|++ -.++.++ ...+.|||. .-.++.... .|-. +|+.++|+
T Consensus 274 P~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~-~iTDiaws 351 (434)
T KOG1009|consen 274 PAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYS-AITDIAWS 351 (434)
T ss_pred ceeecCCCCcceEEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeee-eecceeec
Confidence 0 11112222233333321 1344444 457899998 555665543 3545 79999999
Q ss_pred CCCCEEEEEEcCCcEEEEEcCCCCc
Q 000602 358 SLSSLLVTAGFDSAIKVHQFQAFLP 382 (1398)
Q Consensus 358 pdg~~latgg~Dg~I~iwdl~~~~l 382 (1398)
++|.+|+..+.||..-+-.++...+
T Consensus 352 ~dg~~l~vSS~DGyCS~vtfe~~el 376 (434)
T KOG1009|consen 352 DDGSVLLVSSTDGFCSLVTFEPWEL 376 (434)
T ss_pred CCCcEEEEeccCCceEEEEEcchhc
Confidence 9999999999999999888765433
|
|
| >KOG4227 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=9.3e-13 Score=143.44 Aligned_cols=288 Identities=13% Similarity=0.145 Sum_probs=204.7
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECC------CCeEEEEEEeeeCccEEEEEEeccccccCCCCccce
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLE------AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVT 88 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~------tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~ 88 (1398)
|.+-|.++.|| .+ +++|++|+ |..++||+++ +.+++.....|+...|.+++|. ...
T Consensus 55 H~GCiNAlqFS--~N----~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~-------~~N---- 117 (609)
T KOG4227|consen 55 HTGCINALQFS--HN----DRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFD-------LEN---- 117 (609)
T ss_pred hccccceeeec--cC----CeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEc-------cCC----
Confidence 88999999999 66 89999999 5899999985 3456666655665689999998 443
Q ss_pred eEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeec--ccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL--PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 89 ~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l--~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
+++-+++ +++|.+-|+++.. .+..+ ....+.|+.+..+| ....|++.+.++.|.+||.+
T Consensus 118 ~~~~SG~~~~~VI~HDiEt~q---------------si~V~~~~~~~~~VY~m~~~P---~DN~~~~~t~~~~V~~~D~R 179 (609)
T KOG4227|consen 118 RFLYSGERWGTVIKHDIETKQ---------------SIYVANENNNRGDVYHMDQHP---TDNTLIVVTRAKLVSFIDNR 179 (609)
T ss_pred eeEecCCCcceeEeeecccce---------------eeeeecccCcccceeecccCC---CCceEEEEecCceEEEEecc
Confidence 4555555 7999999998632 22222 22334899999999 77889999999999999997
Q ss_pred CCeEEE--EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000602 166 NSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1398)
Q Consensus 166 ~~~~~~--~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1398)
...... .+........+++.|++.. ..+|++.+..+-+-+||.+-.. .+ ++
T Consensus 180 d~~~~~~~~~~AN~~~~F~t~~F~P~~--P~Li~~~~~~~G~~~~D~R~~~-~~---------------------~~--- 232 (609)
T KOG4227|consen 180 DRQNPISLVLPANSGKNFYTAEFHPET--PALILVNSETGGPNVFDRRMQA-RP---------------------VY--- 232 (609)
T ss_pred CCCCCCceeeecCCCccceeeeecCCC--ceeEEeccccCCCCceeecccc-ch---------------------HH---
Confidence 654211 1223334557788886543 4678888888999999987100 00 00
Q ss_pred cceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC-------ccEEEEEE
Q 000602 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN-------ARVWDCCL 316 (1398)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~-------~~V~~l~~ 316 (1398)
.......+......-.++.|+|.|..|++--....-.+||+...++. .....|. ..+.+++|
T Consensus 233 -~~~~~~~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~R~~----------V~k~D~N~~GY~N~~T~KS~~F 301 (609)
T KOG4227|consen 233 -QRSMFKGLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQRCF----------VLKSDHNPNGYCNIKTIKSMTF 301 (609)
T ss_pred -hhhccccCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecccce----------eEeccCCCCcceeeeeeeeeee
Confidence 00001111111222356889999999988776666778898887662 1222232 24667788
Q ss_pred c-CCEEEEEeCCCcEEEEcCC------C------------------ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCc
Q 000602 317 T-DSFIITAGEDCTCRVWGSD------G------------------KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 317 s-~~~l~sgs~Dg~i~vWd~~------g------------------~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~ 371 (1398)
. +..+++|+.+-.|.+|.+. | +.+..+++|.. -+..+.|+|...+|++.|-.+.
T Consensus 302 ~~D~~v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRS-v~NQVRF~~H~~~l~SSGVE~~ 380 (609)
T KOG4227|consen 302 IDDYTVATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRS-VPNQVRFSQHNNLLVSSGVENS 380 (609)
T ss_pred ecceeeeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccc-cccceeecCCcceEeccchhhh
Confidence 7 4569999999999999972 1 23557889988 5899999999999999999999
Q ss_pred EEEEEc
Q 000602 372 IKVHQF 377 (1398)
Q Consensus 372 I~iwdl 377 (1398)
++||..
T Consensus 381 ~KlWS~ 386 (609)
T KOG4227|consen 381 FKLWSD 386 (609)
T ss_pred eecccc
Confidence 999987
|
|
| >KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.2e-11 Score=140.09 Aligned_cols=264 Identities=15% Similarity=0.159 Sum_probs=179.1
Q ss_pred cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecC----CCCCcEEEEEECCCeE
Q 000602 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD----NLEALRIASGTIYNEI 205 (1398)
Q Consensus 130 ~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~----s~d~~~lasgs~dg~I 205 (1398)
.|..-|.|+.|+. +...+.+++ |..+.+|.-.+......+.-+......++...+. ......++.++.||.+
T Consensus 12 r~~e~vc~v~w~~---~eei~~~~d-Dh~~~~~~~~~~~s~~~~~~p~df~pt~~h~~~rs~~~g~~~d~~~i~s~DGkf 87 (737)
T KOG1524|consen 12 RNSEKVCCVDWSS---NEEIYFVSD-DHQIFKWSDVSRDSVEVAKLPDDFVPTDMHLGGRSSGGGKGSDTLLICSNDGRF 87 (737)
T ss_pred ccceeEEeecccc---cceEEEecc-CceEEEeecccchhhhhhhCCcccCCccccccccccCCCCCcceEEEEcCCceE
Confidence 4666677888886 666555554 5555555433333332233232222222222111 1233578888899998
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~ 285 (1398)
.+.+-. ++.-..+..|.+.|.+-.|+|||.-|+|+++||.|++|.-
T Consensus 88 ~il~k~----------------------------------~rVE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWSr 133 (737)
T KOG1524|consen 88 VILNKS----------------------------------ARVERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWSR 133 (737)
T ss_pred EEeccc----------------------------------chhhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEec
Confidence 887754 4444567789999999999999999999999999999986
Q ss_pred CCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCC
Q 000602 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS 361 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~ 361 (1398)
...-. .++......|.|++|.| +.+++.+.. +.|=.+ ....+-..+.|.+ -|.++.|++..+
T Consensus 134 sGMLR-----------Stl~Q~~~~v~c~~W~p~S~~vl~c~g~h--~~IKpL~~n~k~i~WkAHDG-iiL~~~W~~~s~ 199 (737)
T KOG1524|consen 134 SGMLR-----------STVVQNEESIRCARWAPNSNSIVFCQGGH--ISIKPLAANSKIIRWRAHDG-LVLSLSWSTQSN 199 (737)
T ss_pred cchHH-----------HHHhhcCceeEEEEECCCCCceEEecCCe--EEEeecccccceeEEeccCc-EEEEeecCcccc
Confidence 54311 25556677899999974 566666544 444444 3344567889999 699999999999
Q ss_pred EEEEEEcCCcEEEEEcCCCCcccccCCCc---cccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE-EE
Q 000602 362 LLVTAGFDSAIKVHQFQAFLPGSLESHPE---AKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-AT 437 (1398)
Q Consensus 362 ~latgg~Dg~I~iwdl~~~~l~~l~~~~~---~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv-~t 437 (1398)
.+++||.|-..++||-.|..+-+...|.- +++|+++ +.|.+.+-+ ..+......+.|-.++|++||.-++ ++
T Consensus 200 lI~sgGED~kfKvWD~~G~~Lf~S~~~ey~ITSva~npd-~~~~v~S~n---t~R~~~p~~GSifnlsWS~DGTQ~a~gt 275 (737)
T KOG1524|consen 200 IIASGGEDFRFKIWDAQGANLFTSAAEEYAITSVAFNPE-KDYLLWSYN---TARFSSPRVGSIFNLSWSADGTQATCGT 275 (737)
T ss_pred ceeecCCceeEEeecccCcccccCChhccceeeeeeccc-cceeeeeee---eeeecCCCccceEEEEEcCCCceeeccc
Confidence 99999999999999998877766555543 4567766 444443222 1234455678899999999996555 56
Q ss_pred cCCcEEEEEeec
Q 000602 438 NHGYLYHTKLCD 449 (1398)
Q Consensus 438 ~~g~i~~~~l~~ 449 (1398)
+.|.+....+-+
T Consensus 276 ~~G~v~~A~~ie 287 (737)
T KOG1524|consen 276 STGQLIVAYAIE 287 (737)
T ss_pred cCceEEEeeeeh
Confidence 788887665443
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.9e-13 Score=149.94 Aligned_cols=245 Identities=13% Similarity=0.149 Sum_probs=152.9
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL- 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~- 93 (1398)
|+|-|+|++|+ .+ |.+|++|+ |-.+.|||.-.-++++.+...+...|+++.|- |..+ ++++++
T Consensus 49 H~GCVN~LeWn--~d----G~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFv-------P~tn--nriv~sg 113 (758)
T KOG1310|consen 49 HTGCVNCLEWN--AD----GELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFV-------PYTN--NRIVLSG 113 (758)
T ss_pred ccceecceeec--CC----CCEEeecCCcceEEeecchhcceeeeeecccccceeEEeee-------ccCC--CeEEEec
Confidence 89999999999 88 99999999 58899999998899998876555579999999 4432 245554
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC-cEEEEEECCCeEEEEEcCCCeE---
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSI--- 169 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg-~~Latgs~Dg~V~vWd~~~~~~--- 169 (1398)
+||+.|+|+|+......+.. .. -.+..+....|.+.|..++..| ++ ..+.+++.||+|+-+|++....
T Consensus 114 AgDk~i~lfdl~~~~~~~~d----~~-~~~~~~~~~cht~rVKria~~p---~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 114 AGDKLIKLFDLDSSKEGGMD----HG-MEETTRCWSCHTDRVKRIATAP---NGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred cCcceEEEEecccccccccc----cC-ccchhhhhhhhhhhhhheecCC---CCCceEEEecCCcceeeecccCCccCCc
Confidence 45999999999852211111 00 1244556678999999999998 77 6889999999999999976321
Q ss_pred ----EEEEc--cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCC-CCCCCCCCCCCCCcceeeeccc
Q 000602 170 ----ILEVH--SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQDQ 242 (1398)
Q Consensus 170 ----~~~l~--~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~-~~~~~s~~~~~~~~~~i~i~~~ 242 (1398)
...+. .+..-.+.++.+. ..+..+|+.|+.|--.++||.+.- +.+... .....++ ....+.++.+..
T Consensus 186 ~~~~~~~l~ny~~~lielk~ltis--p~rp~~laVGgsdpfarLYD~Rr~-lks~~s~~~~~~~p---p~~~~cv~yf~p 259 (758)
T KOG1310|consen 186 DEDCPSILVNYNPQLIELKCLTIS--PSRPYYLAVGGSDPFARLYDRRRV-LKSFRSDGTMNTCP---PKDCRCVRYFSP 259 (758)
T ss_pred cccccHHHHHhchhhheeeeeeec--CCCCceEEecCCCchhhhhhhhhh-ccCCCCCccccCCC---CcccchhheecC
Confidence 11111 1111224455553 235678999999999999996411 111111 0001111 112233333322
Q ss_pred ccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc
Q 000602 243 QHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 243 ~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~ 289 (1398)
.........+.----.++-+.|+|+|.-|+..-..-.|.++|+..++
T Consensus 260 ~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~ 306 (758)
T KOG1310|consen 260 GHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDK 306 (758)
T ss_pred ccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCC
Confidence 11100000000011235668899999765444444489999987654
|
|
| >KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=174.53 Aligned_cols=246 Identities=15% Similarity=0.234 Sum_probs=184.2
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC---C---eEEEEEEeeeCccEEEEEEeccccccCCCCccceeE
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---G---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t---g---~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
...+.|+|. +..-....+||.|. ||.|.+||... + ..+.++..|++ .|.++.|+ +.. ..+
T Consensus 65 ~rF~kL~W~--~~g~~~~GlIaGG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G-~V~gLDfN-------~~q---~nl 131 (1049)
T KOG0307|consen 65 NRFNKLAWG--SYGSHSHGLIAGGLEDGNIVLYDPASIIANASEEVLATKSKHTG-PVLGLDFN-------PFQ---GNL 131 (1049)
T ss_pred ccceeeeec--ccCCCccceeeccccCCceEEecchhhccCcchHHHhhhcccCC-ceeeeecc-------ccC---Cce
Confidence 346788888 54001113577766 79999999865 2 35677788888 79999999 665 268
Q ss_pred EEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE
Q 000602 91 VALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI 169 (1398)
Q Consensus 91 la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~ 169 (1398)
||+++ +|.|.|||+.... ..|.+ + -..-.+.|.+++|+- .....||+++.+|++.|||++..+.
T Consensus 132 LASGa~~geI~iWDlnn~~---tP~~~-----~-----~~~~~~eI~~lsWNr--kvqhILAS~s~sg~~~iWDlr~~~p 196 (1049)
T KOG0307|consen 132 LASGADDGEILIWDLNKPE---TPFTP-----G-----SQAPPSEIKCLSWNR--KVSHILASGSPSGRAVIWDLRKKKP 196 (1049)
T ss_pred eeccCCCCcEEEeccCCcC---CCCCC-----C-----CCCCcccceEeccch--hhhHHhhccCCCCCceeccccCCCc
Confidence 88876 7999999998632 12211 1 112457899999986 3556899999999999999999888
Q ss_pred EEEEccCCc-ceEEEEEeecCCCCCcEEEEEECC---CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000602 170 ILEVHSPER-CLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1398)
Q Consensus 170 ~~~l~~~~~-~~~~s~~~~~~s~d~~~lasgs~d---g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1398)
+..+..+.+ +.+..+.|+++. ...|++++.| -.|.+||++ ..
T Consensus 197 ii~ls~~~~~~~~S~l~WhP~~--aTql~~As~dd~~PviqlWDlR--------------------------------~a 242 (1049)
T KOG0307|consen 197 IIKLSDTPGRMHCSVLAWHPDH--ATQLLVASGDDSAPVIQLWDLR--------------------------------FA 242 (1049)
T ss_pred ccccccCCCccceeeeeeCCCC--ceeeeeecCCCCCceeEeeccc--------------------------------cc
Confidence 777765544 445667776543 3344444433 368899988 24
Q ss_pred eeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEE
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFI 321 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l 321 (1398)
..+++.+.+|...|.++.|++.+ ++|+|++.|+.|.+|+..+++. +. .+.....++..+.|. +..+
T Consensus 243 ssP~k~~~~H~~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgEv-----l~-----~~p~~~nW~fdv~w~pr~P~~~ 312 (1049)
T KOG0307|consen 243 SSPLKILEGHQRGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGEV-----LG-----ELPAQGNWCFDVQWCPRNPSVM 312 (1049)
T ss_pred CCchhhhcccccceeeeccCCCCchhhhcccCCCCeeEecCCCceE-----ee-----ecCCCCcceeeeeecCCCcchh
Confidence 56778889999999999999965 8999999999999999999765 22 444566789999998 5799
Q ss_pred EEEeCCCcEEEEcC
Q 000602 322 ITAGEDCTCRVWGS 335 (1398)
Q Consensus 322 ~sgs~Dg~i~vWd~ 335 (1398)
+.++.||.|-|+.+
T Consensus 313 A~asfdgkI~I~sl 326 (1049)
T KOG0307|consen 313 AAASFDGKISIYSL 326 (1049)
T ss_pred hhheeccceeeeee
Confidence 99999999999998
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.51 E-value=5.8e-12 Score=130.19 Aligned_cols=285 Identities=17% Similarity=0.180 Sum_probs=192.5
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC---------C-eEEEEEEeeeCccEEEEEEeccccccCCCCccc
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA---------G-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRV 87 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t---------g-~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~ 87 (1398)
.|.+-+++ |. +++|++|. +|+|.+..+.+ | ..+..++.|++ +|..++|.
T Consensus 12 tvf~qa~s--p~----~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdg-piy~~~f~------------- 71 (325)
T KOG0649|consen 12 TVFAQAIS--PS----KQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDG-PIYYLAFH------------- 71 (325)
T ss_pred HHHHHhhC--Cc----ceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCC-Ceeeeeee-------------
Confidence 45666788 87 89999999 79999999853 2 23445577777 89999998
Q ss_pred eeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCC-----CcEEEEEEEeecCCCcEEEEEECCCeEEEE
Q 000602 88 TFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGCSDNSIRVW 162 (1398)
Q Consensus 88 ~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~-----~~V~~v~fsp~~~dg~~Latgs~Dg~V~vW 162 (1398)
+.+|+++|||.|+=|.+...... .... ++ .....+-|. -.|+++-..| ...-+.+++.|+.+.-|
T Consensus 72 d~~Lls~gdG~V~gw~W~E~~es-~~~K-----~l-we~~~P~~~~~~evPeINam~ldP---~enSi~~AgGD~~~y~~ 141 (325)
T KOG0649|consen 72 DDFLLSGGDGLVYGWEWNEEEES-LATK-----RL-WEVKIPMQVDAVEVPEINAMWLDP---SENSILFAGGDGVIYQV 141 (325)
T ss_pred hhheeeccCceEEEeeehhhhhh-ccch-----hh-hhhcCccccCcccCCccceeEecc---CCCcEEEecCCeEEEEE
Confidence 36899999999999998743210 0000 00 011112222 3588898888 55556677789999999
Q ss_pred EcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccc
Q 000602 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQ 242 (1398)
Q Consensus 163 d~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~ 242 (1398)
|+++|+....+++|... +.++.. . .....+++|+.||++++||.++.+..... ..+
T Consensus 142 dlE~G~i~r~~rGHtDY-vH~vv~--R-~~~~qilsG~EDGtvRvWd~kt~k~v~~i------------------e~y-- 197 (325)
T KOG0649|consen 142 DLEDGRIQREYRGHTDY-VHSVVG--R-NANGQILSGAEDGTVRVWDTKTQKHVSMI------------------EPY-- 197 (325)
T ss_pred EecCCEEEEEEcCCcce-eeeeee--c-ccCcceeecCCCccEEEEeccccceeEEe------------------ccc--
Confidence 99999999999988754 444433 1 23447999999999999999843321110 000
Q ss_pred ccceeEEEEEeCc-cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEE
Q 000602 243 QHTAVNLFRLVGH-EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFI 321 (1398)
Q Consensus 243 ~~~~~~~~~l~gH-~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l 321 (1398)
+.-..++.| ..+|.+++-+. .+|+.|+ ...+.+|.++..++ .....-.+++..+.|..+.+
T Consensus 198 ----k~~~~lRp~~g~wigala~~e--dWlvCGg-Gp~lslwhLrsse~-----------t~vfpipa~v~~v~F~~d~v 259 (325)
T KOG0649|consen 198 ----KNPNLLRPDWGKWIGALAVNE--DWLVCGG-GPKLSLWHLRSSES-----------TCVFPIPARVHLVDFVDDCV 259 (325)
T ss_pred ----cChhhcCcccCceeEEEeccC--ceEEecC-CCceeEEeccCCCc-----------eEEEecccceeEeeeecceE
Confidence 001112333 34677777654 5666654 45789999998776 25556677888999999999
Q ss_pred EEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCC-CEEEEEEcCCcEEEEE
Q 000602 322 ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLS-SLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 322 ~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg-~~latgg~Dg~I~iwd 376 (1398)
+++++...+.-|.++|........... ..++..++-.. ++|-.+|....+.|+.
T Consensus 260 l~~G~g~~v~~~~l~Gvl~a~ip~~s~-~c~s~s~~~~p~k~~s~ag~s~~~~i~~ 314 (325)
T KOG0649|consen 260 LIGGEGNHVQSYTLNGVLQANIPVEST-ACYSASWQTSPIKFISIAGFSNKLHILK 314 (325)
T ss_pred EEeccccceeeeeeccEEEEeccCCcc-ceeeecccCCceEEEEecccceeeeeee
Confidence 999999999999998876665554433 35666664333 3555566666666653
|
|
| >KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.49 E-value=7.4e-13 Score=145.42 Aligned_cols=123 Identities=25% Similarity=0.455 Sum_probs=106.8
Q ss_pred EeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCC
Q 000602 252 LVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGED 327 (1398)
Q Consensus 252 l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~D 327 (1398)
+.||.++|..++|+| +...+||||+|.+|.||++..+... ....+++ ..+.||..+|--++|++ +.|++++.|
T Consensus 77 v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~-~~ltepv--v~L~gH~rrVg~V~wHPtA~NVLlsag~D 153 (472)
T KOG0303|consen 77 VCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLT-RDLTEPV--VELYGHQRRVGLVQWHPTAPNVLLSAGSD 153 (472)
T ss_pred ccCccccccccccCccCCceeecCCCCceEEEEECCCcccc-cCcccce--EEEeecceeEEEEeecccchhhHhhccCC
Confidence 569999999999999 5567999999999999999876552 1112223 48899999999999994 899999999
Q ss_pred CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 328 CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 328 g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
.+|.+|++ +|+.+-++. |.. -|+++.|+.||.+|+|++.|..|||||.+.
T Consensus 154 n~v~iWnv~tgeali~l~-hpd-~i~S~sfn~dGs~l~TtckDKkvRv~dpr~ 204 (472)
T KOG0303|consen 154 NTVSIWNVGTGEALITLD-HPD-MVYSMSFNRDGSLLCTTCKDKKVRVIDPRR 204 (472)
T ss_pred ceEEEEeccCCceeeecC-CCC-eEEEEEeccCCceeeeecccceeEEEcCCC
Confidence 99999999 898888887 777 599999999999999999999999999943
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.6e-13 Score=154.54 Aligned_cols=224 Identities=20% Similarity=0.327 Sum_probs=166.6
Q ss_pred eeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC--------CeEEEEEccCCcceEEEEEeecCCCCCcE
Q 000602 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--------SSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1398)
Q Consensus 124 ~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~--------~~~~~~l~~~~~~~~~s~~~~~~s~d~~~ 195 (1398)
.-.++..|.+.|..++|.| ....|++++.|+++.+|+++. -+.+.++.+|.+. +.++.+ +.++..
T Consensus 286 ik~tl~s~~d~ir~l~~~~---sep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~gP-Vl~v~v---~~n~~~ 358 (577)
T KOG0642|consen 286 IKFTLRSHDDCIRALAFHP---SEPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEGP-VLCVVV---PSNGEH 358 (577)
T ss_pred eeeeeecchhhhhhhhcCC---CCCeEEEeccccchhhhhhcccCCccccceeeeEEEecccCc-eEEEEe---cCCceE
Confidence 3347788999999999999 888899999999999999932 1346777777664 456665 678999
Q ss_pred EEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE
Q 000602 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1398)
Q Consensus 196 lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s 275 (1398)
+++|+.||+|+.|++. ....+ ++..........+.||++.|+.+++|+....|++||
T Consensus 359 ~ysgg~Dg~I~~w~~p-~n~dp----------------------~ds~dp~vl~~~l~Ghtdavw~l~~s~~~~~Llscs 415 (577)
T KOG0642|consen 359 CYSGGIDGTIRCWNLP-PNQDP----------------------DDSYDPSVLSGTLLGHTDAVWLLALSSTKDRLLSCS 415 (577)
T ss_pred EEeeccCceeeeeccC-CCCCc----------------------ccccCcchhccceeccccceeeeeecccccceeeec
Confidence 9999999999999876 11100 011112234566889999999999999999999999
Q ss_pred CCCeEEEEEcCCCccc-------CCCC--ce-----------------------Eeee-eEEecC--------CccEEEE
Q 000602 276 DDRSARIWEVRAEYWK-------DSDS--IE-----------------------EVGS-SVLYGH--------NARVWDC 314 (1398)
Q Consensus 276 ~Dg~V~iWd~~~~~~~-------~~~~--~~-----------------------~i~~-~~~~gh--------~~~V~~l 314 (1398)
.||++|+|+....... .+.+ +. ++.. ..+.+. ...+.-+
T Consensus 416 ~DgTvr~w~~~~~~~~~f~~~~e~g~Plsvd~~ss~~a~~~~s~~~~~~~~~~~ev~s~~~~~~s~~~~~~~~~~~in~v 495 (577)
T KOG0642|consen 416 SDGTVRLWEPTEESPCTFGEPKEHGYPLSVDRTSSRPAHSLASFRFGYTSIDDMEVVSDLLIFESSASPGPRRYPQINKV 495 (577)
T ss_pred CCceEEeeccCCcCccccCCccccCCcceEeeccchhHhhhhhcccccccchhhhhhhheeeccccCCCcccccCccceE
Confidence 9999999998765441 0000 00 0000 000000 0123333
Q ss_pred EEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 315 CLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 315 ~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
..+ ..+.+++.+|+.|+++|. +++.+.....|.. .++++++.|+|-+|++++.|+.+++|.+.
T Consensus 496 Vs~~~~~~~~~~hed~~Ir~~dn~~~~~l~s~~a~~~-svtslai~~ng~~l~s~s~d~sv~l~kld 561 (577)
T KOG0642|consen 496 VSHPTADITFTAHEDRSIRFFDNKTGKILHSMVAHKD-SVTSLAIDPNGPYLMSGSHDGSVRLWKLD 561 (577)
T ss_pred EecCCCCeeEecccCCceecccccccccchheeeccc-eecceeecCCCceEEeecCCceeehhhcc
Confidence 343 368999999999999999 8999999999988 69999999999999999999999999994
|
|
| >KOG0649 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.46 E-value=4.7e-11 Score=123.57 Aligned_cols=245 Identities=10% Similarity=0.124 Sum_probs=169.2
Q ss_pred EEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 68 LHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 68 V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
|..-+++ |.+ ++++++. +|.|.++.+..-. .++++.+ ....+-..++|.++|+.++|..
T Consensus 13 vf~qa~s-------p~~----~~l~agn~~G~iav~sl~sl~-s~sa~~~----gk~~iv~eqahdgpiy~~~f~d---- 72 (325)
T KOG0649|consen 13 VFAQAIS-------PSK----QYLFAGNLFGDIAVLSLKSLD-SGSAEPP----GKLKIVPEQAHDGPIYYLAFHD---- 72 (325)
T ss_pred HHHHhhC-------Ccc----eEEEEecCCCeEEEEEehhhh-ccccCCC----CCcceeeccccCCCeeeeeeeh----
Confidence 4445566 766 4555554 8999999997422 1222222 1234445689999999999975
Q ss_pred CcEEEEEECCCeEEEEEcCCCeE------EEEEccCC------cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCC
Q 000602 147 NRSLAIGCSDNSIRVWDISNSSI------ILEVHSPE------RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH 214 (1398)
Q Consensus 147 g~~Latgs~Dg~V~vWd~~~~~~------~~~l~~~~------~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~ 214 (1398)
.+|++|+ ||.|+=|....... +.++..|. -..+.++-+ .|...-++.++-|+.++-||++
T Consensus 73 -~~Lls~g-dG~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~l---dP~enSi~~AgGD~~~y~~dlE--- 144 (325)
T KOG0649|consen 73 -DFLLSGG-DGLVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWL---DPSENSILFAGGDGVIYQVDLE--- 144 (325)
T ss_pred -hheeecc-CceEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEe---ccCCCcEEEecCCeEEEEEEec---
Confidence 5677775 69999988754221 11111111 112334433 4455555555589999999999
Q ss_pred ccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCC
Q 000602 215 VAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294 (1398)
Q Consensus 215 ~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~ 294 (1398)
+++...+++||++.|.++.--.....+.||++||++|+||.+++++
T Consensus 145 ------------------------------~G~i~r~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~---- 190 (325)
T KOG0649|consen 145 ------------------------------DGRIQREYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKH---- 190 (325)
T ss_pred ------------------------------CCEEEEEEcCCcceeeeeeecccCcceeecCCCccEEEEeccccce----
Confidence 7888899999999999999866667899999999999999999887
Q ss_pred CceEeee----eEEecCC-ccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEc
Q 000602 295 SIEEVGS----SVLYGHN-ARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 295 ~~~~i~~----~~~~gh~-~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~ 368 (1398)
++.+.+ ..+.+|. .+|-+++-+...+++|+ ...+.+|++ ..++...|.-.. ++..+.|.. ..++.+|.
T Consensus 191 -v~~ie~yk~~~~lRp~~g~wigala~~edWlvCGg-Gp~lslwhLrsse~t~vfpipa--~v~~v~F~~--d~vl~~G~ 264 (325)
T KOG0649|consen 191 -VSMIEPYKNPNLLRPDWGKWIGALAVNEDWLVCGG-GPKLSLWHLRSSESTCVFPIPA--RVHLVDFVD--DCVLIGGE 264 (325)
T ss_pred -eEEeccccChhhcCcccCceeEEEeccCceEEecC-CCceeEEeccCCCceEEEeccc--ceeEeeeec--ceEEEecc
Confidence 443322 1233343 46788888888888775 467999999 666666665433 377888854 46888898
Q ss_pred CCcEEEEEcCCC
Q 000602 369 DSAIKVHQFQAF 380 (1398)
Q Consensus 369 Dg~I~iwdl~~~ 380 (1398)
.+.|.-|.+.|.
T Consensus 265 g~~v~~~~l~Gv 276 (325)
T KOG0649|consen 265 GNHVQSYTLNGV 276 (325)
T ss_pred ccceeeeeeccE
Confidence 889999999764
|
|
| >KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.5e-13 Score=151.49 Aligned_cols=260 Identities=17% Similarity=0.237 Sum_probs=176.7
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCC--------CeEEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA--------GTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t--------g~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
|..-|++++|. |. ...|++++ +++|.+|+++. -+.+.+|++|.+ +|.|++.. +++
T Consensus 293 ~~d~ir~l~~~--~s----ep~lit~sed~~lk~WnLqk~~~s~~~~~epi~tfraH~g-PVl~v~v~-------~n~-- 356 (577)
T KOG0642|consen 293 HDDCIRALAFH--PS----EPVLITASEDGTLKLWNLQKAKKSAEKDVEPILTFRAHEG-PVLCVVVP-------SNG-- 356 (577)
T ss_pred chhhhhhhhcC--CC----CCeEEEeccccchhhhhhcccCCccccceeeeEEEecccC-ceEEEEec-------CCc--
Confidence 77889999998 65 56777777 89999999932 257889999988 89999999 777
Q ss_pred ceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 87 VTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 87 ~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
..+.++| |++|+.|++.....+-+.+.| ..+...+.||.+.||.+++++ ....|++++.||++++|+..
T Consensus 357 --~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp-----~vl~~~l~Ghtdavw~l~~s~---~~~~Llscs~DgTvr~w~~~ 426 (577)
T KOG0642|consen 357 --EHCYSGGIDGTIRCWNLPPNQDPDDSYDP-----SVLSGTLLGHTDAVWLLALSS---TKDRLLSCSSDGTVRLWEPT 426 (577)
T ss_pred --eEEEeeccCceeeeeccCCCCCcccccCc-----chhccceeccccceeeeeecc---cccceeeecCCceEEeeccC
Confidence 4555555 999999988732211111111 345667889999999999999 88889999999999999987
Q ss_pred CCeEEEEEccCC-cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 166 NSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 166 ~~~~~~~l~~~~-~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
.... ..+..+. ...-.++.+.. .+-...++....+.-.+.+..
T Consensus 427 ~~~~-~~f~~~~e~g~Plsvd~~s--s~~a~~~~s~~~~~~~~~~~e--------------------------------- 470 (577)
T KOG0642|consen 427 EESP-CTFGEPKEHGYPLSVDRTS--SRPAHSLASFRFGYTSIDDME--------------------------------- 470 (577)
T ss_pred CcCc-cccCCccccCCcceEeecc--chhHhhhhhcccccccchhhh---------------------------------
Confidence 6655 2222211 11222333311 111111221111211222222
Q ss_pred ceeEEEEEe-------CccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc
Q 000602 245 TAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1398)
Q Consensus 245 ~~~~~~~l~-------gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s 317 (1398)
....+..+. .-...+..+.++|.+.+.+++-.|+.|+++|..++.. + .....|...+.++++.
T Consensus 471 v~s~~~~~~s~~~~~~~~~~~in~vVs~~~~~~~~~~hed~~Ir~~dn~~~~~-----l-----~s~~a~~~svtslai~ 540 (577)
T KOG0642|consen 471 VVSDLLIFESSASPGPRRYPQINKVVSHPTADITFTAHEDRSIRFFDNKTGKI-----L-----HSMVAHKDSVTSLAID 540 (577)
T ss_pred hhhheeeccccCCCcccccCccceEEecCCCCeeEecccCCceeccccccccc-----c-----hheeeccceecceeec
Confidence 111111111 1124577888999999999999999999999998876 2 2556788889999997
Q ss_pred --CCEEEEEeCCCcEEEEcC-CCceEEEEeccc
Q 000602 318 --DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1398)
Q Consensus 318 --~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~ 347 (1398)
+.+|++++.||.+++|.+ ...++.....|.
T Consensus 541 ~ng~~l~s~s~d~sv~l~kld~k~~~~es~~~r 573 (577)
T KOG0642|consen 541 PNGPYLMSGSHDGSVRLWKLDVKTCVLESTAHR 573 (577)
T ss_pred CCCceEEeecCCceeehhhccchheeecccccc
Confidence 689999999999999999 555555554443
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.45 E-value=3e-11 Score=132.59 Aligned_cols=241 Identities=15% Similarity=0.177 Sum_probs=166.2
Q ss_pred cEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeC--ccEEEEEEecc
Q 000602 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHG--IRLHGISCNFI 76 (1398)
Q Consensus 5 tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~--~~V~~i~fs~~ 76 (1398)
.+++.+..++. +..+|.+|.++ .+ +++++-. ..|+|||+++.++++++..-.. ..+.++.++
T Consensus 69 ~Lkv~~~Kk~~~ICe~~fpt~IL~VrmN--r~-----RLvV~Le-e~IyIydI~~MklLhTI~t~~~n~~gl~AlS~n-- 138 (391)
T KOG2110|consen 69 KLKVVHFKKKTTICEIFFPTSILAVRMN--RK-----RLVVCLE-ESIYIYDIKDMKLLHTIETTPPNPKGLCALSPN-- 138 (391)
T ss_pred eEEEEEcccCceEEEEecCCceEEEEEc--cc-----eEEEEEc-ccEEEEecccceeehhhhccCCCccceEeeccC--
Confidence 46777777654 67889999999 43 5555544 4599999999999999976422 235444444
Q ss_pred ccccCCCCccceeEEEEEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE
Q 000602 77 NCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg 153 (1398)
+++ .++|.=+ .|.|.|||+.+ ++.+..+..|.+.+-+++|++ +|.+|||+
T Consensus 139 -----~~n----~ylAyp~s~t~GdV~l~d~~n---------------l~~v~~I~aH~~~lAalafs~---~G~llATA 191 (391)
T KOG2110|consen 139 -----NAN----CYLAYPGSTTSGDVVLFDTIN---------------LQPVNTINAHKGPLAALAFSP---DGTLLATA 191 (391)
T ss_pred -----CCC----ceEEecCCCCCceEEEEEccc---------------ceeeeEEEecCCceeEEEECC---CCCEEEEe
Confidence 443 4666654 58999999986 788889999999999999999 99999999
Q ss_pred ECCCe-EEEEEcCCCeEEEEEccCCc-ceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCC
Q 000602 154 CSDNS-IRVWDISNSSIILEVHSPER-CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 154 s~Dg~-V~vWd~~~~~~~~~l~~~~~-~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
+..|+ |||+.+.+|+.+.+++.... +.+|++.| ++++.+|++.+..++|+++.+......+........+..+..
T Consensus 192 SeKGTVIRVf~v~~G~kl~eFRRG~~~~~IySL~F---s~ds~~L~~sS~TeTVHiFKL~~~~~~~~~~p~~~~~~~~~~ 268 (391)
T KOG2110|consen 192 SEKGTVIRVFSVPEGQKLYEFRRGTYPVSIYSLSF---SPDSQFLAASSNTETVHIFKLEKVSNNPPESPTAGTSWFGKV 268 (391)
T ss_pred ccCceEEEEEEcCCccEeeeeeCCceeeEEEEEEE---CCCCCeEEEecCCCeEEEEEecccccCCCCCCCCCCcccchh
Confidence 99997 68999999999999885443 45888888 788999999999999999999843322211111111111110
Q ss_pred C-------CcceeeecccccceeEEEEEeCccC---CEEEEEEcCCCCEEEEEECCCeEEEEEcCCC
Q 000602 232 S-------DFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1398)
Q Consensus 232 ~-------~~~~i~i~~~~~~~~~~~~l~gH~~---~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~ 288 (1398)
. ..+....|+.. +.+.......+ .+..+.-.+...++..++.||.+..|.+...
T Consensus 269 sk~~~sylps~V~~~~~~~---R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~dG~~y~y~l~~~ 332 (391)
T KOG2110|consen 269 SKAATSYLPSQVSSVLDQS---RKFATAKLPESGRKNICSLSSIQKIPRVLVASYDGHLYSYRLPPK 332 (391)
T ss_pred hhhhhhhcchhhhhhhhhc---cceeEEEccCCCccceEEeeccCCCCEEEEEEcCCeEEEEEcCCC
Confidence 0 11111223322 22333322222 2333333357789999999999999988754
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.45 E-value=8.6e-12 Score=134.21 Aligned_cols=224 Identities=13% Similarity=0.127 Sum_probs=169.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC---eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG---TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg---~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
...||+|.||+ +| +..+|.+. ...|.||..... +..+++..|.. .|.+|+|+ |.++ +++
T Consensus 9 ~~~pitchAwn--~d----rt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~-~vtgvdWa-------p~sn---rIv 71 (361)
T KOG1523|consen 9 LLEPITCHAWN--SD----RTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDK-IVTGVDWA-------PKSN---RIV 71 (361)
T ss_pred ccCceeeeeec--CC----CceEEeccCCceEEEEEecCCCCceeceehhhhCc-ceeEEeec-------CCCC---cee
Confidence 35899999999 98 88888887 579999998765 46778887766 79999999 7762 455
Q ss_pred EEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE--
Q 000602 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-- 169 (1398)
Q Consensus 92 a~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~-- 169 (1398)
.++.|+.-.||....+. ..++.-.+..|+...++|.|+| .+..+|+|+....|.||-++...-
T Consensus 72 tcs~drnayVw~~~~~~------------~WkptlvLlRiNrAAt~V~WsP---~enkFAVgSgar~isVcy~E~ENdWW 136 (361)
T KOG1523|consen 72 TCSHDRNAYVWTQPSGG------------TWKPTLVLLRINRAATCVKWSP---KENKFAVGSGARLISVCYYEQENDWW 136 (361)
T ss_pred EccCCCCccccccCCCC------------eeccceeEEEeccceeeEeecC---cCceEEeccCccEEEEEEEeccccee
Confidence 55559999999985332 2566667778999999999999 999999999999999998865432
Q ss_pred -EEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 170 -ILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 170 -~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
-+.++.+.++.+.++.++ +++.++++|+.|+..+|+..--+.... .+...+=+... .-+..
T Consensus 137 VsKhikkPirStv~sldWh---pnnVLlaaGs~D~k~rVfSayIK~Vde----kpap~pWgsk~-----------PFG~l 198 (361)
T KOG1523|consen 137 VSKHIKKPIRSTVTSLDWH---PNNVLLAAGSTDGKCRVFSAYIKGVDE----KPAPTPWGSKM-----------PFGQL 198 (361)
T ss_pred hhhhhCCccccceeeeecc---CCcceecccccCcceeEEEEeeecccc----CCCCCCCccCC-----------cHHHH
Confidence 345667778888999884 668899999999999999865211111 11111111100 02333
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCc
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~ 289 (1398)
+..+....+.|..+.|+|+|..|+-.+.|.++.+=|.....
T Consensus 199 m~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~da~~p~ 239 (361)
T KOG1523|consen 199 MSEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFVDAAGPS 239 (361)
T ss_pred HHhhccCCCceeeeEeCCCCCEeeEecCCCceEEeecCCCc
Confidence 44454567899999999999999999999999999987764
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.4e-11 Score=149.58 Aligned_cols=276 Identities=16% Similarity=0.109 Sum_probs=187.7
Q ss_pred CcEEEEECCCC-eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCccccc
Q 000602 44 SQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1398)
Q Consensus 44 g~I~Iwd~~tg-~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~ 121 (1398)
+.+.||+++.. ..-..+. ....|.++.|+ |.. ..+++++. +|.|.+||+....... .
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~--~~s~v~~~~f~-------p~~---p~ll~gG~y~GqV~lWD~~~~~~~~---------~ 280 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE--SPSEVTCLKFC-------PFD---PNLLAGGCYNGQVVLWDLRKGSDTP---------P 280 (555)
T ss_pred ceEEEEecCCCCCceEEEe--cCCceeEEEec-------cCC---cceEEeeccCceEEEEEccCCCCCC---------C
Confidence 37999999876 3333343 33479999999 553 24444443 8999999998644110 1
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEE---EE--cc------CCcceEEEEEeecCC
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL---EV--HS------PERCLLYSMKLWGDN 190 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~---~l--~~------~~~~~~~s~~~~~~s 190 (1398)
...-.....|.++|+.+.|.... .+.-+++++.||.|..|+++.-.... .+ .. .......++.|...
T Consensus 281 s~ls~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~- 358 (555)
T KOG1587|consen 281 SGLSALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT- 358 (555)
T ss_pred cccccccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC-
Confidence 12223345789999999998722 23568999999999999886432210 00 01 12234566777654
Q ss_pred CCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCE
Q 000602 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1398)
Q Consensus 191 ~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~ 270 (1398)
+...++.|+.+|.|..-.....+..+. ...+....+..|.++|+++.++|=+..
T Consensus 359 -~p~~FiVGTe~G~v~~~~r~g~~~~~~-------------------------~~~~~~~~~~~h~g~v~~v~~nPF~~k 412 (555)
T KOG1587|consen 359 -DPNHFIVGTEEGKVYKGCRKGYTPAPE-------------------------VSYKGHSTFITHIGPVYAVSRNPFYPK 412 (555)
T ss_pred -CCceEEEEcCCcEEEEEeccCCccccc-------------------------ccccccccccccCcceEeeecCCCccc
Confidence 445699999999998744431110000 012334566779999999999997765
Q ss_pred EEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC---CCceEEEEe
Q 000602 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS---DGKQLKMIK 344 (1398)
Q Consensus 271 LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~---~g~~l~~l~ 344 (1398)
+...+.|-+|+||.......+ + ..+..+...|++++|+ +..|+++..||.+-+||+ ..+++.+.+
T Consensus 413 ~fls~gDW~vriWs~~~~~~P----l-----~~~~~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~ 483 (555)
T KOG1587|consen 413 NFLSVGDWTVRIWSEDVIASP----L-----LSLDSSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQK 483 (555)
T ss_pred eeeeeccceeEeccccCCCCc----c-----hhhhhccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccc
Confidence 544444999999998732221 1 2455667779999999 578999999999999999 345556655
Q ss_pred cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 345 ~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.+.. ....+.+++.|+.|+.|...|++.+|++.
T Consensus 484 ~~~~-~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 484 VCSP-ALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred cccc-ccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 5543 57778889999999999999999999994
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.43 E-value=1.6e-10 Score=136.94 Aligned_cols=262 Identities=16% Similarity=0.194 Sum_probs=164.6
Q ss_pred CCCcEEEEeCCc-Ce--------eccceEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECC-CCeE--EEEEEeeeCcc
Q 000602 2 GKKDLSEWRLDV-GQ--------YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLE-AGTL--IRPFQVFHGIR 67 (1398)
Q Consensus 2 ~D~tv~iWdl~~-~~--------h~~~Vtalafs~~pd~~~~g~lLaag~--dg~I~Iwd~~-tg~~--l~~~~~~~~~~ 67 (1398)
+|+.|++|++.+ ++ ..+....++++ |+ +++|+++. ++.|.+|++. ++++ +..... .+ .
T Consensus 10 ~~~~I~~~~~~~~g~l~~~~~~~~~~~~~~l~~s--pd----~~~lyv~~~~~~~i~~~~~~~~g~l~~~~~~~~-~~-~ 81 (330)
T PRK11028 10 ESQQIHVWNLNHEGALTLLQVVDVPGQVQPMVIS--PD----KRHLYVGVRPEFRVLSYRIADDGALTFAAESPL-PG-S 81 (330)
T ss_pred CCCCEEEEEECCCCceeeeeEEecCCCCccEEEC--CC----CCEEEEEECCCCcEEEEEECCCCceEEeeeecC-CC-C
Confidence 588999999964 32 23457789999 99 88887765 5899999986 4443 222221 22 4
Q ss_pred EEEEEEeccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 68 LHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 68 V~~i~fs~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
...|+|+ |+++ .++++. +++.|.+|+++.... ..+....+.+ .....+++++| +
T Consensus 82 p~~i~~~-------~~g~---~l~v~~~~~~~v~v~~~~~~g~-----------~~~~~~~~~~-~~~~~~~~~~p---~ 136 (330)
T PRK11028 82 PTHISTD-------HQGR---FLFSASYNANCVSVSPLDKDGI-----------PVAPIQIIEG-LEGCHSANIDP---D 136 (330)
T ss_pred ceEEEEC-------CCCC---EEEEEEcCCCeEEEEEECCCCC-----------CCCceeeccC-CCcccEeEeCC---C
Confidence 6789999 9883 333333 489999999974220 0122222322 23467789999 9
Q ss_pred CcEEEEE-ECCCeEEEEEcCCCeEEE-----EEccCCcceEEEEEeecCCCCCcEEEEEEC-CCeEEEEEcccCCccccC
Q 000602 147 NRSLAIG-CSDNSIRVWDISNSSIIL-----EVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLL 219 (1398)
Q Consensus 147 g~~Latg-s~Dg~V~vWd~~~~~~~~-----~l~~~~~~~~~s~~~~~~s~d~~~lasgs~-dg~I~vWd~~~~~~~~~~ 219 (1398)
+++++++ ..++.|.+||+.+...+. ....+.......+.+ ++++.++++... +++|.+|++....
T Consensus 137 g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~~~~~~~g~~p~~~~~---~pdg~~lyv~~~~~~~v~v~~~~~~~----- 208 (330)
T PRK11028 137 NRTLWVPCLKEDRIRLFTLSDDGHLVAQEPAEVTTVEGAGPRHMVF---HPNQQYAYCVNELNSSVDVWQLKDPH----- 208 (330)
T ss_pred CCEEEEeeCCCCEEEEEEECCCCcccccCCCceecCCCCCCceEEE---CCCCCEEEEEecCCCEEEEEEEeCCC-----
Confidence 9888554 457999999997633221 111112222344555 688999988776 8999999997110
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeEEEEEeC------ccCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcccC
Q 000602 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG------HEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g------H~~~I~~vafspdg~~LaS~s-~Dg~V~iWd~~~~~~~~ 292 (1398)
...+.+..+.. +......+.|+|++++|+++. .++.|.+|++......
T Consensus 209 ------------------------~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~- 263 (330)
T PRK11028 209 ------------------------GEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV- 263 (330)
T ss_pred ------------------------CCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-
Confidence 01122222221 122345689999999988875 4789999999754321
Q ss_pred CCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeC-CCcEEEEcC
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~-Dg~i~vWd~ 335 (1398)
...+. ....+ ...+.+.++ +++|+++.. +++|.+|++
T Consensus 264 ---~~~~~-~~~~~--~~p~~~~~~~dg~~l~va~~~~~~v~v~~~ 303 (330)
T PRK11028 264 ---LSFEG-HQPTE--TQPRGFNIDHSGKYLIAAGQKSHHISVYEI 303 (330)
T ss_pred ---EEEeE-EEecc--ccCCceEECCCCCEEEEEEccCCcEEEEEE
Confidence 22221 01111 234567776 678877765 899999987
|
|
| >PRK11028 6-phosphogluconolactonase; Provisional | Back alignment and domain information |
|---|
Probab=99.42 E-value=1.8e-10 Score=136.49 Aligned_cols=274 Identities=15% Similarity=0.150 Sum_probs=167.3
Q ss_pred EEEEEeCCcEEEEECCC-Ce--EEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCC
Q 000602 37 FLLAGSGSQVLLYDLEA-GT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNS 112 (1398)
Q Consensus 37 lLaag~dg~I~Iwd~~t-g~--~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~ 112 (1398)
|++.+.++.|++||+.+ ++ .+..+.. ....+.++++ |+++ .+.++. .++.|.+|+++...
T Consensus 5 y~~~~~~~~I~~~~~~~~g~l~~~~~~~~--~~~~~~l~~s-------pd~~---~lyv~~~~~~~i~~~~~~~~g---- 68 (330)
T PRK11028 5 YIASPESQQIHVWNLNHEGALTLLQVVDV--PGQVQPMVIS-------PDKR---HLYVGVRPEFRVLSYRIADDG---- 68 (330)
T ss_pred EEEcCCCCCEEEEEECCCCceeeeeEEec--CCCCccEEEC-------CCCC---EEEEEECCCCcEEEEEECCCC----
Confidence 44445589999999964 43 4445442 2357889999 8883 343443 37899999997311
Q ss_pred CCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCC-Ce---EEEEEccCCcceEEEEEee
Q 000602 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISN-SS---IILEVHSPERCLLYSMKLW 187 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~-~~---~~~~l~~~~~~~~~s~~~~ 187 (1398)
.++...... ..+....++|+| ++++|++++. ++.|.+|++.+ +. .+..+.... ....+.+
T Consensus 69 --------~l~~~~~~~-~~~~p~~i~~~~---~g~~l~v~~~~~~~v~v~~~~~~g~~~~~~~~~~~~~--~~~~~~~- 133 (330)
T PRK11028 69 --------ALTFAAESP-LPGSPTHISTDH---QGRFLFSASYNANCVSVSPLDKDGIPVAPIQIIEGLE--GCHSANI- 133 (330)
T ss_pred --------ceEEeeeec-CCCCceEEEECC---CCCEEEEEEcCCCeEEEEEECCCCCCCCceeeccCCC--cccEeEe-
Confidence 122233222 223467899999 9998887764 88999999964 32 222222211 1234444
Q ss_pred cCCCCCcEEEEE-ECCCeEEEEEcccC-CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEc
Q 000602 188 GDNLEALRIASG-TIYNEIIVWKVDWE-HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1398)
Q Consensus 188 ~~s~d~~~lasg-s~dg~I~vWd~~~~-~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafs 265 (1398)
+|++.++++. ..++.|.+||+... .+.+ .......... ......++|+
T Consensus 134 --~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~---------------------------~~~~~~~~~~-g~~p~~~~~~ 183 (330)
T PRK11028 134 --DPDNRTLWVPCLKEDRIRLFTLSDDGHLVA---------------------------QEPAEVTTVE-GAGPRHMVFH 183 (330)
T ss_pred --CCCCCEEEEeeCCCCEEEEEEECCCCcccc---------------------------cCCCceecCC-CCCCceEEEC
Confidence 6788877554 46699999999721 0000 0000011111 2335679999
Q ss_pred CCCCEEEEEEC-CCeEEEEEcCCCcccCCCCceEeeeeEEec------CCccEEEEEEc--CCEEEEEeC-CCcEEEEcC
Q 000602 266 SCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYG------HNARVWDCCLT--DSFIITAGE-DCTCRVWGS 335 (1398)
Q Consensus 266 pdg~~LaS~s~-Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~g------h~~~V~~l~~s--~~~l~sgs~-Dg~i~vWd~ 335 (1398)
|++++++++.. +++|.+|++...... ++.+. .+.. +......+.++ +++++++.. +++|.+|++
T Consensus 184 pdg~~lyv~~~~~~~v~v~~~~~~~~~----~~~~~--~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i 257 (330)
T PRK11028 184 PNQQYAYCVNELNSSVDVWQLKDPHGE----IECVQ--TLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSV 257 (330)
T ss_pred CCCCEEEEEecCCCEEEEEEEeCCCCC----EEEEE--EEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEE
Confidence 99999988776 899999999743110 12121 1111 11223357777 467887754 789999998
Q ss_pred --CCceEEEEecc--cCccEEEEEEcCCCCEEEEEEc-CCcEEEEEcC
Q 000602 336 --DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1398)
Q Consensus 336 --~g~~l~~l~~h--~~~~V~sl~~spdg~~latgg~-Dg~I~iwdl~ 378 (1398)
++..+. +..+ .+...+.+.++|+|++|++++. +++|.+|+++
T Consensus 258 ~~~~~~~~-~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 258 SEDGSVLS-FEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEID 304 (330)
T ss_pred eCCCCeEE-EeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEc
Confidence 332222 2222 1123567899999999988776 8999999884
|
|
| >KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.42 E-value=4.2e-13 Score=158.72 Aligned_cols=284 Identities=14% Similarity=0.265 Sum_probs=185.4
Q ss_pred eEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEE
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1398)
Q Consensus 247 ~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sg 324 (1398)
+.+..+.||...|+|+.|...|.++++|++|+.++||.+.+..+. +...||.+.|+.++.+ .-+++++
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~l----------As~rGhs~ditdlavs~~n~~iaaa 250 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCL----------ASCRGHSGDITDLAVSSNNTMIAAA 250 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhh----------ccCCCCccccchhccchhhhhhhhc
Confidence 345567899999999999999999999999999999999888773 4889999999999987 4688999
Q ss_pred eCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEe
Q 000602 325 GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSI 403 (1398)
Q Consensus 325 s~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~ 403 (1398)
+.|..|++|.+ ++.++..+.+|.+ .|++++|+|-. +.+.||++++||.+-..+ .+.. ....|..
T Consensus 251 S~D~vIrvWrl~~~~pvsvLrghtg-avtaiafsP~~----sss~dgt~~~wd~r~~~~-~y~p--rp~~~~~------- 315 (1113)
T KOG0644|consen 251 SNDKVIRVWRLPDGAPVSVLRGHTG-AVTAIAFSPRA----SSSDDGTCRIWDARLEPR-IYVP--RPLKFTE------- 315 (1113)
T ss_pred ccCceEEEEecCCCchHHHHhcccc-ceeeeccCccc----cCCCCCceEecccccccc-ccCC--CCCCccc-------
Confidence 99999999999 9999999999999 79999999965 778999999999861100 0000 0000000
Q ss_pred eeCCCccceeeccCCCCcEEEEEEecCCeEEEE-EcCCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCC
Q 000602 404 KIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1398)
Q Consensus 404 ~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~-t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1398)
...+-++-|...+.-+.+ +.++.-. .+......|.. ..-+ +... ++.
T Consensus 316 ---------------~~~~~s~~~~~~~~~f~Tgs~d~ea~---n~e~~~l~~~~------~~li----f~t~----ssd 363 (1113)
T KOG0644|consen 316 ---------------KDLVDSILFENNGDRFLTGSRDGEAR---NHEFEQLAWRS------NLLI----FVTR----SSD 363 (1113)
T ss_pred ---------------ccceeeeeccccccccccccCCcccc---cchhhHhhhhc------cceE----EEec----ccc
Confidence 012333333333322222 2222111 01111111111 0000 1000 011
Q ss_pred CCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcE-EEEEcCCCcEEEEecCCCCCcccc
Q 000602 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF-IFTADPKGRLKLWQLCDPFSSVCY 561 (1398)
Q Consensus 483 ~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~-L~s~s~dg~I~iWdi~~~~~~~~~ 561 (1398)
-..+.+++-.+-.+.+|++.++.+... .....+. ..++-++|-+.. ..+++.||...|||+-.+...
T Consensus 364 ~~~~~~~ar~~~~~~vwnl~~g~l~H~------l~ghsd~---~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pi--- 431 (1113)
T KOG0644|consen 364 LSSIVVTARNDHRLCVWNLYTGQLLHN------LMGHSDE---VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPI--- 431 (1113)
T ss_pred ccccceeeeeeeEeeeeecccchhhhh------hcccccc---eeeeeecCCCcHhhhhccCCCceEeeecccCCcc---
Confidence 124556666777899999998865421 1111111 112445665544 458899999999999865321
Q ss_pred ccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCC
Q 000602 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLR 611 (1398)
Q Consensus 562 ~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~ 611 (1398)
+.+..+|.. +..-.||+||..+++.+.-|.++|+....
T Consensus 432 -----------k~y~~gh~k-l~d~kFSqdgts~~lsd~hgql~i~g~gq 469 (1113)
T KOG0644|consen 432 -----------KHYFIGHGK-LVDGKFSQDGTSIALSDDHGQLYILGTGQ 469 (1113)
T ss_pred -----------eeeecccce-eeccccCCCCceEecCCCCCceEEeccCC
Confidence 112235554 44557999999999999999999987543
|
|
| >KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.7e-12 Score=131.46 Aligned_cols=304 Identities=15% Similarity=0.114 Sum_probs=181.7
Q ss_pred eEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 302 SVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 302 ~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
..+.+|.+.|+++.|. ..+|++|..-|.+.+|++ +.+.+..++++....|+.+..-|+ ..+.|-|+|+.+.+|++..
T Consensus 8 fvLRp~~~~v~s~~fqa~~rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~-d~l~tqgRd~~L~lw~ia~ 86 (323)
T KOG0322|consen 8 FVLRPHSSSVTSVLFQANERLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN-DSLDTQGRDPLLILWTIAY 86 (323)
T ss_pred eEeccccchheehhhccchhhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC-cchhhcCCCceEEEEEccC
Confidence 4777999999999998 678999999999999999 667777888777778999998887 5688999999999999954
Q ss_pred CCcccccC-CCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEE
Q 000602 380 FLPGSLES-HPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1398)
Q Consensus 380 ~~l~~l~~-~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i 458 (1398)
........ ....+.|.. +++ .........+.+.|+. |.-. ....+.....-..+
T Consensus 87 s~~i~i~Si~~nslgFCr----fSl------------~~~~k~~eqll~yp~r--------gsde-~h~~D~g~~tqv~i 141 (323)
T KOG0322|consen 87 SAFISIHSIVVNSLGFCR----FSL------------VKKPKNSEQLLEYPSR--------GSDE-THKQDGGDTTQVQI 141 (323)
T ss_pred cceEEEeeeecccccccc----cee------------ccCCCcchhheecCCc--------ccch-hhhhccCccceeEc
Confidence 21100000 000000000 000 0000011111222211 1000 00111111000011
Q ss_pred Ee---ecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeee-----cCcccceeEEEEE
Q 000602 459 LQ---VSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS-----AGIERQLLGTYWC 530 (1398)
Q Consensus 459 ~~---~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~-----~~~~~~~l~~~~~ 530 (1398)
.. ......+.|.+.... ....-+++.|-++|.+.+||+.++..+..+ ...+. ..+....++ +.
T Consensus 142 ~dd~~~~Klgsvmc~~~~~~-----c~s~~lllaGyEsghvv~wd~S~~~~~~~~--~~~~kv~~~~ash~qpvls--ld 212 (323)
T KOG0322|consen 142 ADDSERSKLGSVMCQDKDHA-----CGSTFLLLAGYESGHVVIWDLSTGDKIIQL--PQSSKVESPNASHKQPVLS--LD 212 (323)
T ss_pred cCchhccccCceeeeecccc-----ccceEEEEEeccCCeEEEEEccCCceeecc--ccccccccchhhccCccee--ee
Confidence 11 112334445442211 233457888999999999999987322111 11111 112222332 22
Q ss_pred ecCCCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECC
Q 000602 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1398)
Q Consensus 531 ~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~ 610 (1398)
+.+....=++++.+..+..|.++.... . +..+.+....|. .|..+.+-||+++||++.-|+.|+||.+.
T Consensus 213 yas~~~rGisgga~dkl~~~Sl~~s~g--s--------lq~~~e~~lknp-Gv~gvrIRpD~KIlATAGWD~RiRVyswr 281 (323)
T KOG0322|consen 213 YASSCDRGISGGADDKLVMYSLNHSTG--S--------LQIRKEITLKNP-GVSGVRIRPDGKILATAGWDHRIRVYSWR 281 (323)
T ss_pred echhhcCCcCCCccccceeeeeccccC--c--------ccccceEEecCC-CccceEEccCCcEEeecccCCcEEEEEec
Confidence 333333446778888899999886421 1 122222222222 26677788999999999999999999987
Q ss_pred CcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEEEEEcCCccEEEEEE
Q 000602 611 RDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1398)
Q Consensus 611 ~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L~S~g~DG~i~iw~~ 669 (1398)
+ +.|+.+++ -|. .+|.+|+|+ ++...++.+|.|+.|.+|++
T Consensus 282 t-------------l~pLAVLk-yHs-agvn~vAfs---pd~~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 282 T-------------LNPLAVLK-YHS-AGVNAVAFS---PDCELMAAASKDARISLWKL 322 (323)
T ss_pred c-------------CCchhhhh-hhh-cceeEEEeC---CCCchhhhccCCceEEeeec
Confidence 5 57888776 455 799999999 45688999999999999985
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=4.6e-13 Score=149.82 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=203.5
Q ss_pred EEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEE
Q 000602 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~ 100 (1398)
.+.|+ .+ |++|+.|+ -|.|-.+|+.++++...+.+.+ .|..+.|- -+ +.++|++-.+.+.
T Consensus 134 ~~~yt--rn----GrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~E--tv~Dv~~L-------Hn----eq~~AVAQK~y~y 194 (545)
T KOG1272|consen 134 HLDYT--RN----GRHLLLGGRKGHLAAFDWVTKKLHFEINVME--TVRDVTFL-------HN----EQFFAVAQKKYVY 194 (545)
T ss_pred eeeec--CC----ccEEEecCCccceeeeecccceeeeeeehhh--hhhhhhhh-------cc----hHHHHhhhhceEE
Confidence 56777 66 88888888 6999999999999998888755 59999997 44 3799999999999
Q ss_pred EEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcce
Q 000602 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1398)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~ 180 (1398)
|||-. +..++.++.| ..|..+.|.| .--+|++++..|.++.-|+.+|+.+..+....+.
T Consensus 195 vYD~~----------------GtElHClk~~-~~v~rLeFLP---yHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~- 253 (545)
T KOG1272|consen 195 VYDNN----------------GTELHCLKRH-IRVARLEFLP---YHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGR- 253 (545)
T ss_pred EecCC----------------CcEEeehhhc-Cchhhhcccc---hhheeeecccCCceEEEeechhhhhHHHHccCCc-
Confidence 99975 5667788766 6799999999 8888999999999999999999998777644432
Q ss_pred EEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEE
Q 000602 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1398)
Q Consensus 181 ~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1398)
+..+. .+|-...+-.|...|+|.+|++. ...++..+..|.++|.
T Consensus 254 ~~vm~---qNP~NaVih~GhsnGtVSlWSP~---------------------------------skePLvKiLcH~g~V~ 297 (545)
T KOG1272|consen 254 TDVMK---QNPYNAVIHLGHSNGTVSLWSPN---------------------------------SKEPLVKILCHRGPVS 297 (545)
T ss_pred cchhh---cCCccceEEEcCCCceEEecCCC---------------------------------CcchHHHHHhcCCCcc
Confidence 22222 26777889999999999999998 5667777889999999
Q ss_pred EEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC--CCc
Q 000602 261 RIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGK 338 (1398)
Q Consensus 261 ~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~--~g~ 338 (1398)
+|++.++|+|+||.+.|+.++|||++.-.. +. +... ......++++..-++.++....+.||.- .+.
T Consensus 298 siAv~~~G~YMaTtG~Dr~~kIWDlR~~~q-----l~-----t~~t-p~~a~~ls~SqkglLA~~~G~~v~iw~d~~~~s 366 (545)
T KOG1272|consen 298 SIAVDRGGRYMATTGLDRKVKIWDLRNFYQ-----LH-----TYRT-PHPASNLSLSQKGLLALSYGDHVQIWKDALKGS 366 (545)
T ss_pred eEEECCCCcEEeecccccceeEeeeccccc-----cc-----eeec-CCCccccccccccceeeecCCeeeeehhhhcCC
Confidence 999999999999999999999999998544 22 2222 3345678888766677777788999964 322
Q ss_pred --eEEEEecc--cCccEEEEEEcCCCCEEEEEEcCCc
Q 000602 339 --QLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 339 --~l~~l~~h--~~~~V~sl~~spdg~~latgg~Dg~ 371 (1398)
.-..+..| .+ +|..+.|.|-...|-.|-.-|.
T Consensus 367 ~~~~~pYm~H~~~~-~V~~l~FcP~EDvLGIGH~~G~ 402 (545)
T KOG1272|consen 367 GHGETPYMNHRCGG-PVEDLRFCPYEDVLGIGHAGGI 402 (545)
T ss_pred CCCCcchhhhccCc-ccccceeccHHHeeeccccCCc
Confidence 22222222 23 6899999997776665555443
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.7e-11 Score=148.45 Aligned_cols=186 Identities=11% Similarity=0.130 Sum_probs=122.5
Q ss_pred EEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 162 WDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 162 Wd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
|+. .|..+..+..|..... .++. .++++.++++|+.||+|++|+.+.- .+.
T Consensus 1034 W~p-~G~lVAhL~Ehs~~v~-k~a~--s~~~~s~FvsgS~DGtVKvW~~~k~--~~~----------------------- 1084 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSSAVI-KLAV--SSEHTSLFVSGSDDGTVKVWNLRKL--EGE----------------------- 1084 (1431)
T ss_pred CCc-cceEeehhhhcccccc-ceee--cCCCCceEEEecCCceEEEeeehhh--hcC-----------------------
Confidence 443 4666777776665444 3333 2566689999999999999998711 110
Q ss_pred cccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---C
Q 000602 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D 318 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~ 318 (1398)
....+...++.--...+..+.+.+.+..+|.++.||.|++.++...........+... ........-|..-+|. .
T Consensus 1085 -~~s~rS~ltys~~~sr~~~vt~~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri-~n~~~~g~vv~m~a~~~~~~ 1162 (1431)
T KOG1240|consen 1085 -GGSARSELTYSPEGSRVEKVTMCGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRI-PNLKKDGVVVSMHAFTAIVQ 1162 (1431)
T ss_pred -cceeeeeEEEeccCCceEEEEeccCCCeEEEEcCCCeEEEEEccccccccceeeeeec-ccccCCCceEEeeccccccc
Confidence 0123334444445788999999999999999999999999999873221000001000 0111222223333443 3
Q ss_pred C-EEEEEeCCCcEEEEcC-CCceEEE--EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 319 S-FIITAGEDCTCRVWGS-DGKQLKM--IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 319 ~-~l~sgs~Dg~i~vWd~-~g~~l~~--l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
. .++.+...+.+..||. ....+.. .....| .|++++.+|-+.++++|...|.+.+||++-
T Consensus 1163 S~~lvy~T~~~~iv~~D~r~~~~~w~lk~~~~hG-~vTSi~idp~~~WlviGts~G~l~lWDLRF 1226 (1431)
T KOG1240|consen 1163 SHVLVYATDLSRIVSWDTRMRHDAWRLKNQLRHG-LVTSIVIDPWCNWLVIGTSRGQLVLWDLRF 1226 (1431)
T ss_pred ceeEEEEEeccceEEecchhhhhHHhhhcCcccc-ceeEEEecCCceEEEEecCCceEEEEEeec
Confidence 4 7888889999999998 3332322 333445 599999999999999999999999999964
|
|
| >KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.8e-10 Score=122.13 Aligned_cols=274 Identities=12% Similarity=0.178 Sum_probs=186.6
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc---
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--- 95 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g--- 95 (1398)
.+..+.|. .| ..+|..|+-.--++|+.+.-....... .++..|.-+-|+ . .++|..+
T Consensus 7 ti~~~~~N--qd----~~~lsvGs~~Gyk~~~~~~~~k~~~~~-~~~~~IvEmLFS-------S------SLvaiV~~~q 66 (391)
T KOG2110|consen 7 TINFIGFN--QD----STLLSVGSKDGYKIFSCSPFEKCFSKD-TEGVSIVEMLFS-------S------SLVAIVSIKQ 66 (391)
T ss_pred ceeeeeec--cc----eeEEEccCCCceeEEecCchHHhhccc-CCCeEEEEeecc-------c------ceeEEEecCC
Confidence 45666788 77 778888885557899887654422222 234567777787 3 3555444
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000602 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1398)
Q Consensus 96 d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~ 175 (1398)
.+.+++++..... ..+... ....|.+|.++- ++|+++-.+. |.|||+.+.+.+.++..
T Consensus 67 pr~Lkv~~~Kk~~-------------~ICe~~---fpt~IL~VrmNr-----~RLvV~Lee~-IyIydI~~MklLhTI~t 124 (391)
T KOG2110|consen 67 PRKLKVVHFKKKT-------------TICEIF---FPTSILAVRMNR-----KRLVVCLEES-IYIYDIKDMKLLHTIET 124 (391)
T ss_pred CceEEEEEcccCc-------------eEEEEe---cCCceEEEEEcc-----ceEEEEEccc-EEEEecccceeehhhhc
Confidence 3568888887422 122222 447899999964 6777776554 99999999999988864
Q ss_pred C--CcceEEEEEeecCCCCCcEEEE--EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 176 P--ERCLLYSMKLWGDNLEALRIAS--GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 176 ~--~~~~~~s~~~~~~s~d~~~las--gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
- ....+..+.. +.++.++|- ....|.|.+||.. .-+++..
T Consensus 125 ~~~n~~gl~AlS~---n~~n~ylAyp~s~t~GdV~l~d~~---------------------------------nl~~v~~ 168 (391)
T KOG2110|consen 125 TPPNPKGLCALSP---NNANCYLAYPGSTTSGDVVLFDTI---------------------------------NLQPVNT 168 (391)
T ss_pred cCCCccceEeecc---CCCCceEEecCCCCCceEEEEEcc---------------------------------cceeeeE
Confidence 3 2222333322 445556665 2346899999988 6778888
Q ss_pred EeCccCCEEEEEEcCCCCEEEEEECCCe-EEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCC
Q 000602 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC 328 (1398)
Q Consensus 252 l~gH~~~I~~vafspdg~~LaS~s~Dg~-V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg 328 (1398)
+..|++.+-+++|+++|.+|||+|+.|+ ||++.+.+++. +.+++. -. -...|.+++|+ ..+|.+.+..+
T Consensus 169 I~aH~~~lAalafs~~G~llATASeKGTVIRVf~v~~G~k-----l~eFRR-G~--~~~~IySL~Fs~ds~~L~~sS~Te 240 (391)
T KOG2110|consen 169 INAHKGPLAALAFSPDGTLLATASEKGTVIRVFSVPEGQK-----LYEFRR-GT--YPVSIYSLSFSPDSQFLAASSNTE 240 (391)
T ss_pred EEecCCceeEEEECCCCCEEEEeccCceEEEEEEcCCccE-----eeeeeC-Cc--eeeEEEEEEECCCCCeEEEecCCC
Confidence 9999999999999999999999999987 69999998876 443321 11 14578999998 47888889999
Q ss_pred cEEEEcCCCc--------------------------------------eEEEEecccC--ccEEEEEEcCCCCEEEEEEc
Q 000602 329 TCRVWGSDGK--------------------------------------QLKMIKEHIG--RGIWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 329 ~i~vWd~~g~--------------------------------------~l~~l~~h~~--~~V~sl~~spdg~~latgg~ 368 (1398)
+|.||.++.. ...+.+.... +.+..+.-.+...++..++.
T Consensus 241 TVHiFKL~~~~~~~~~~p~~~~~~~~~~sk~~~sylps~V~~~~~~~R~FAt~~l~~s~~~~~~~l~~~~~~~~v~vas~ 320 (391)
T KOG2110|consen 241 TVHIFKLEKVSNNPPESPTAGTSWFGKVSKAATSYLPSQVSSVLDQSRKFATAKLPESGRKNICSLSSIQKIPRVLVASY 320 (391)
T ss_pred eEEEEEecccccCCCCCCCCCCcccchhhhhhhhhcchhhhhhhhhccceeEEEccCCCccceEEeeccCCCCEEEEEEc
Confidence 9999987210 0011111111 12333333356778889999
Q ss_pred CCcEEEEEcC
Q 000602 369 DSAIKVHQFQ 378 (1398)
Q Consensus 369 Dg~I~iwdl~ 378 (1398)
||.+..|.+.
T Consensus 321 dG~~y~y~l~ 330 (391)
T KOG2110|consen 321 DGHLYSYRLP 330 (391)
T ss_pred CCeEEEEEcC
Confidence 9999999984
|
|
| >KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.38 E-value=4.3e-11 Score=145.37 Aligned_cols=298 Identities=15% Similarity=0.174 Sum_probs=196.6
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC--cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~--~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
.-..+.|+| -...++++...-.|+|||.+.++.+..+..+. ...+..+.+... .|..++.+++.||.|+||+-.
T Consensus 1066 ~pk~~~~hp---f~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe-~D~aLlLtas~dGvIRIwk~y 1141 (1387)
T KOG1517|consen 1066 PPKTLKFHP---FEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINE-QDDALLLTASSDGVIRIWKDY 1141 (1387)
T ss_pred CCceeeecC---CCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecc-cchhheeeeccCceEEEeccc
Confidence 456678888 66788888777799999999999887776433 334566666554 567789999999999999865
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE---e----CccCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000602 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL---V----GHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l---~----gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd 284 (1398)
.. .|. +.+.+... . +-.+.=.-+.|.....+|+++++-+.|||||
T Consensus 1142 ~~-------------------------~~~---~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tGd~r~IRIWD 1193 (1387)
T KOG1517|consen 1142 AD-------------------------KWK---KPELVTAWSSLSDQLPGARGTGLVVDWQQQSGHLLVTGDVRSIRIWD 1193 (1387)
T ss_pred cc-------------------------ccC---CceeEEeeccccccCccCCCCCeeeehhhhCCeEEecCCeeEEEEEe
Confidence 10 000 11111111 1 1112223467888778888888899999999
Q ss_pred cCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC--C--CceEEEEecccCc-cEEEEEE
Q 000602 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS--D--GKQLKMIKEHIGR-GIWRCLY 356 (1398)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~--~--g~~l~~l~~h~~~-~V~sl~~ 356 (1398)
...... ... ...+....|+++.-+ ++.|+.|-.||.+|+||. . ...+...+.|... +|..+.+
T Consensus 1194 a~~E~~-----~~d----iP~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~sl 1264 (1387)
T KOG1517|consen 1194 AHKEQV-----VAD----IPYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSL 1264 (1387)
T ss_pred ccccee-----Eee----cccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEe
Confidence 988654 221 233445556666554 689999999999999998 2 2356777888762 3889999
Q ss_pred cCCCCE-EEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE
Q 000602 357 DSLSSL-LVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1398)
Q Consensus 357 spdg~~-latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv 435 (1398)
.+.|-. |++|+.||.|++||++.....++ +++. ..|+ -.+..+++..++...+++
T Consensus 1265 q~~G~~elvSgs~~G~I~~~DlR~~~~e~~---------------~~iv--------~~~~-yGs~lTal~VH~hapiiA 1320 (1387)
T KOG1517|consen 1265 QRQGLGELVSGSQDGDIQLLDLRMSSKETF---------------LTIV--------AHWE-YGSALTALTVHEHAPIIA 1320 (1387)
T ss_pred ecCCCcceeeeccCCeEEEEecccCccccc---------------ceee--------eccc-cCccceeeeeccCCCeee
Confidence 887764 99999999999999975321111 1110 0110 012478888999888999
Q ss_pred EEcCCcEEEEEeecCCCcee--EEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCC
Q 000602 436 ATNHGYLYHTKLCDMDSVNW--NKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGD 504 (1398)
Q Consensus 436 ~t~~g~i~~~~l~~~~~~~w--~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~ 504 (1398)
+++.+.+..|.+........ ...+-+.....+.|+.+. |..-++|+|+.|..|.||.....
T Consensus 1321 sGs~q~ikIy~~~G~~l~~~k~n~~F~~q~~gs~scL~FH--------P~~~llAaG~~Ds~V~iYs~~k~ 1383 (1387)
T KOG1517|consen 1321 SGSAQLIKIYSLSGEQLNIIKYNPGFMGQRIGSVSCLAFH--------PHRLLLAAGSADSTVSIYSCEKP 1383 (1387)
T ss_pred ecCcceEEEEecChhhhcccccCcccccCcCCCcceeeec--------chhHhhhhccCCceEEEeecCCc
Confidence 88877777655433221111 111222233455666663 44567899999999999987654
|
|
| >KOG1310 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.7e-12 Score=142.08 Aligned_cols=140 Identities=19% Similarity=0.228 Sum_probs=116.7
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
+.+.+.|.||++-|+|++|+. +|.+|++|+.|-.+.|||.-..+.+..+...+...++++.|.+.. +...|++|..
T Consensus 40 L~lE~eL~GH~GCVN~LeWn~---dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~t-nnriv~sgAg 115 (758)
T KOG1310|consen 40 LDLEAELTGHTGCVNCLEWNA---DGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYT-NNRIVLSGAG 115 (758)
T ss_pred cchhhhhccccceecceeecC---CCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccC-CCeEEEeccC
Confidence 556678899999999999999 999999999999999999999999999998888899999999875 4568999999
Q ss_pred CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCeE
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRSA 280 (1398)
Q Consensus 202 dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~V 280 (1398)
|..|+++|+...+-.+. ++ ......+.+..|...|..|+-.|++ ..+-++++||+|
T Consensus 116 Dk~i~lfdl~~~~~~~~--------------d~---------~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGti 172 (758)
T KOG1310|consen 116 DKLIKLFDLDSSKEGGM--------------DH---------GMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTI 172 (758)
T ss_pred cceEEEEeccccccccc--------------cc---------CccchhhhhhhhhhhhhheecCCCCCceEEEecCCcce
Confidence 99999999982111110 00 0223445567899999999999988 788999999999
Q ss_pred EEEEcCCC
Q 000602 281 RIWEVRAE 288 (1398)
Q Consensus 281 ~iWd~~~~ 288 (1398)
|-+|++..
T Consensus 173 rQyDiREp 180 (758)
T KOG1310|consen 173 RQYDIREP 180 (758)
T ss_pred eeecccCC
Confidence 99999874
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=7.1e-12 Score=141.29 Aligned_cols=311 Identities=16% Similarity=0.168 Sum_probs=213.8
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
++.+...|..|.+.|+.|.|+. .|+.|++|+.|..|.+||...+.....+.+.+...++...|.+++ +...+++.+
T Consensus 131 r~~l~~kL~~H~GcVntV~FN~---~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s-~d~ti~~~s 206 (559)
T KOG1334|consen 131 RLRLQKKLNKHKGCVNTVHFNQ---RGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFS-GDRTIVTSS 206 (559)
T ss_pred HhhhhhcccCCCCccceeeecc---cCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCC-CCcCceecc
Confidence 4567778999999999999999 999999999999999999999999988888887788888888876 456799999
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC-CEEEEEECCCe
Q 000602 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG-SKLVSVSDDRS 279 (1398)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg-~~LaS~s~Dg~ 279 (1398)
.||++++=.+... ........+..|.++|..++.-|+. ..|.|++.|+.
T Consensus 207 ~dgqvr~s~i~~t------------------------------~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~ 256 (559)
T KOG1334|consen 207 RDGQVRVSEILET------------------------------GYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAV 256 (559)
T ss_pred ccCceeeeeeccc------------------------------cceecceecccccCccceeeecCCCCCcccccccccc
Confidence 9999999876510 0112245567899999999999976 45899999999
Q ss_pred EEEEEcCCCcccCCCCceEeeeeEEecCCc---cEEEEEEcC---CEEEEEeCCCcEEEEcCC---Cc----eEEEEecc
Q 000602 280 ARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTD---SFIITAGEDCTCRVWGSD---GK----QLKMIKEH 346 (1398)
Q Consensus 280 V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~---~V~~l~~s~---~~l~sgs~Dg~i~vWd~~---g~----~l~~l~~h 346 (1398)
+.-.|++..... ..+. ....+.. ...+++..| ..+++++.|-.+|+||.. .+ .+.++-.|
T Consensus 257 v~~~Dlr~~~pa-----~~~~--cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~ 329 (559)
T KOG1334|consen 257 VFHIDLRQDVPA-----EKFV--CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPH 329 (559)
T ss_pred eeeeeeccCCcc-----ceee--eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCc
Confidence 999999887551 1111 2222222 346666663 689999999999999972 11 22333222
Q ss_pred -----cCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCC---CcccccCCCccccccCCccEEEeeeCCCccceeeccCC
Q 000602 347 -----IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF---LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSK 418 (1398)
Q Consensus 347 -----~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~---~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (1398)
..-.|++++|+.++.-|++.-.|-.|+++.-.-. .+.+... . + ...+. .+++|
T Consensus 330 hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~---------~-~-------~~~k~--vYKGH 390 (559)
T KOG1334|consen 330 HLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSP---------R-E-------QYVKR--VYKGH 390 (559)
T ss_pred cccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcc---------h-h-------hccch--hhccc
Confidence 1225999999988776777777888888854211 1110000 0 0 00011 12333
Q ss_pred --CCcEEEEEEec-CCeEEEEEc-CCcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCC
Q 000602 419 --SEYVRCLHLTS-EDTLYIATN-HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKG 494 (1398)
Q Consensus 419 --~~~V~~lafs~-dg~llv~t~-~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG 494 (1398)
...|..+.|.. ...++++++ .|.|+ +|+.......+.+.+... -+.|++- -|.-.+||+.+-|.
T Consensus 391 rN~~TVKgVNFfGPrsEyVvSGSDCGhIF---iW~K~t~eii~~MegDr~-VVNCLEp--------HP~~PvLAsSGid~ 458 (559)
T KOG1334|consen 391 RNSRTVKGVNFFGPRSEYVVSGSDCGHIF---IWDKKTGEIIRFMEGDRH-VVNCLEP--------HPHLPVLASSGIDH 458 (559)
T ss_pred ccccccceeeeccCccceEEecCccceEE---EEecchhHHHHHhhcccc-eEeccCC--------CCCCchhhccCCcc
Confidence 34588888764 556777664 68888 455555442233444433 4555544 25567899999999
Q ss_pred CEEEEEEcC
Q 000602 495 NMTIVRVVG 503 (1398)
Q Consensus 495 ~I~Iwd~~~ 503 (1398)
.|+||...+
T Consensus 459 DVKIWTP~~ 467 (559)
T KOG1334|consen 459 DVKIWTPLT 467 (559)
T ss_pred ceeeecCCc
Confidence 999998743
|
|
| >KOG1334 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.35 E-value=6.3e-12 Score=141.70 Aligned_cols=310 Identities=14% Similarity=0.113 Sum_probs=216.7
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.|-|..|.|+ .. |..|++|+ |..|.+||+.+++....|...+...|..-.|-|. .+ +..++.+
T Consensus 141 H~GcVntV~FN--~~----Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~-----s~----d~ti~~~ 205 (559)
T KOG1334|consen 141 HKGCVNTVHFN--QR----GDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPF-----SG----DRTIVTS 205 (559)
T ss_pred CCCccceeeec--cc----CceeeccCccceEEeehhhccCcccccccccccchhhhhccCC-----CC----CcCceec
Confidence 88999999999 66 88999999 6999999999998888887655557888888733 22 3566665
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
+ ||.|++=.+.... ..+-...+..|.++|.-++.-|. +-..|.+++.|+.+.-.|+..+.....+
T Consensus 206 s~dgqvr~s~i~~t~------------~~e~t~rl~~h~g~vhklav~p~--sp~~f~S~geD~~v~~~Dlr~~~pa~~~ 271 (559)
T KOG1334|consen 206 SRDGQVRVSEILETG------------YVENTKRLAPHEGPVHKLAVEPD--SPKPFLSCGEDAVVFHIDLRQDVPAEKF 271 (559)
T ss_pred cccCceeeeeecccc------------ceecceecccccCccceeeecCC--CCCcccccccccceeeeeeccCCcccee
Confidence 5 9999998876422 12335566789999999999982 3456889999999999999876553322
Q ss_pred c---cCC--cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 174 H---SPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 174 ~---~~~--~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
. ... +--+++++..+ .+...+++|+.|-.+++||.+.-...+. . +.++ ...+
T Consensus 272 ~cr~~~~~~~v~L~~Ia~~P--~nt~~faVgG~dqf~RvYD~R~~~~e~~--n-------------~~~~------~f~p 328 (559)
T KOG1334|consen 272 VCREADEKERVGLYTIAVDP--RNTNEFAVGGSDQFARVYDQRRIDKEEN--N-------------GVLD------KFCP 328 (559)
T ss_pred eeeccCCccceeeeeEecCC--CCccccccCChhhhhhhhcccchhhccc--c-------------chhh------hcCC
Confidence 2 222 23456666532 2345899999999999999872111110 0 0000 0001
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCC---ceEeeeeEEecCCc--cEEEEEEcC---CE
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS---IEEVGSSVLYGHNA--RVWDCCLTD---SF 320 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~---~~~i~~~~~~gh~~--~V~~l~~s~---~~ 320 (1398)
-+-...-.-.|++++|+.++.-|.+...|-.|++++-.-+....... .+...+..+.||.. .|-.+.|-| .+
T Consensus 329 ~hl~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 329 HHLVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred ccccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 11111223569999999887766666677788888544332211111 11111135778865 578888874 79
Q ss_pred EEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 321 IITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 321 l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+++|+.-|.|.||+- +++.+..+.+... -|.|+.-+|--..||+.|-|..|+||...
T Consensus 409 VvSGSDCGhIFiW~K~t~eii~~MegDr~-VVNCLEpHP~~PvLAsSGid~DVKIWTP~ 466 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEIIRFMEGDRH-VVNCLEPHPHLPVLASSGIDHDVKIWTPL 466 (559)
T ss_pred EEecCccceEEEEecchhHHHHHhhcccc-eEeccCCCCCCchhhccCCccceeeecCC
Confidence 999999999999999 7788888887777 69999999999999999999999999984
|
|
| >KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.33 E-value=2.6e-10 Score=141.13 Aligned_cols=269 Identities=16% Similarity=0.149 Sum_probs=173.0
Q ss_pred EECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeee
Q 000602 49 YDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQS 127 (1398)
Q Consensus 49 wd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~ 127 (1398)
|++ .|.+++.+..|.. .|..++.++ |.+ .++++++ ||+|++|++..-..... ..+...+
T Consensus 1034 W~p-~G~lVAhL~Ehs~-~v~k~a~s~------~~~----s~FvsgS~DGtVKvW~~~k~~~~~~--------s~rS~lt 1093 (1431)
T KOG1240|consen 1034 WNP-RGILVAHLHEHSS-AVIKLAVSS------EHT----SLFVSGSDDGTVKVWNLRKLEGEGG--------SARSELT 1093 (1431)
T ss_pred CCc-cceEeehhhhccc-cccceeecC------CCC----ceEEEecCCceEEEeeehhhhcCcc--------eeeeeEE
Confidence 554 5788888887776 577888771 332 4666655 89999999974321111 1233334
Q ss_pred cccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC--eE-----EEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS--SI-----ILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 128 l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~--~~-----~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
+..-...+.++.+.+ .++.+|+++.||.|++.+++.. .. ...........+.++...........|+.++
T Consensus 1094 ys~~~sr~~~vt~~~---~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T 1170 (1431)
T KOG1240|consen 1094 YSPEGSRVEKVTMCG---NGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYAT 1170 (1431)
T ss_pred EeccCCceEEEEecc---CCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEE
Confidence 433457899999998 9999999999999999998752 11 1111122222233332222112224788899
Q ss_pred CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeE
Q 000602 201 IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280 (1398)
Q Consensus 201 ~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V 280 (1398)
..+.|..||.+..+ .+|.. ...-..|.|++++.+|.+.++++|...|.+
T Consensus 1171 ~~~~iv~~D~r~~~-----------------------~~w~l--------k~~~~hG~vTSi~idp~~~WlviGts~G~l 1219 (1431)
T KOG1240|consen 1171 DLSRIVSWDTRMRH-----------------------DAWRL--------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQL 1219 (1431)
T ss_pred eccceEEecchhhh-----------------------hHHhh--------hcCccccceeEEEecCCceEEEEecCCceE
Confidence 99999999998211 11211 112235889999999999999999999999
Q ss_pred EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---C--CEEEEEeC--CCcEEEEcC-CCceEEEEecccCc---
Q 000602 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---D--SFIITAGE--DCTCRVWGS-DGKQLKMIKEHIGR--- 349 (1398)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~--~~l~sgs~--Dg~i~vWd~-~g~~l~~l~~h~~~--- 349 (1398)
.+||++-+.. +. .-..++..+|..+..+ + ...++++. .+.+.+|++ +|.+..++....+.
T Consensus 1220 ~lWDLRF~~~-----i~----sw~~P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~l 1290 (1431)
T KOG1240|consen 1220 VLWDLRFRVP-----IL----SWEHPARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPIL 1290 (1431)
T ss_pred EEEEeecCce-----ee----cccCcccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcch
Confidence 9999997654 22 1234455666666655 3 55555554 678999999 66554444332110
Q ss_pred ---------------cEEEEEEcCCCCEEEEEEcCCcEEEEEcCCC
Q 000602 350 ---------------GIWRCLYDSLSSLLVTAGFDSAIKVHQFQAF 380 (1398)
Q Consensus 350 ---------------~V~sl~~spdg~~latgg~Dg~I~iwdl~~~ 380 (1398)
......+...+.++.|||.|..||.||....
T Consensus 1291 s~~~Ps~~~~kp~~~~~~~~~~~~~~~~~ltggsd~kIR~wD~~~p 1336 (1431)
T KOG1240|consen 1291 SYALPSNDARKPDSLAGISCGVCEKNGFLLTGGSDMKIRKWDPTRP 1336 (1431)
T ss_pred hhhcccccCCCCCcccceeeecccCCceeeecCCccceeeccCCCc
Confidence 1122334444568999999999999999543
|
|
| >KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.32 E-value=3.4e-10 Score=137.53 Aligned_cols=282 Identities=12% Similarity=0.093 Sum_probs=180.1
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE-----EE
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI-----IL 171 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~-----~~ 171 (1398)
+.+.||++..+. .+...+ .-...|.+++|+|+ +..+||.|..+|.|.+||+..+.. +.
T Consensus 222 ~~~~vW~~~~p~--------------~Pe~~~-~~~s~v~~~~f~p~--~p~ll~gG~y~GqV~lWD~~~~~~~~~s~ls 284 (555)
T KOG1587|consen 222 GVLLVWSLKNPN--------------TPELVL-ESPSEVTCLKFCPF--DPNLLAGGCYNGQVVLWDLRKGSDTPPSGLS 284 (555)
T ss_pred ceEEEEecCCCC--------------CceEEE-ecCCceeEEEeccC--CcceEEeeccCceEEEEEccCCCCCCCcccc
Confidence 479999998642 222222 23578999999994 677899999999999999987654 22
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
.....+...+..+.+.... .+.-+++++.||.|..|+++--.... .. .. .. .......
T Consensus 285 ~~~~sh~~~v~~vvW~~~~-~~~~f~s~ssDG~i~~W~~~~l~~P~-e~----------~~---------~~-~~~~~~~ 342 (555)
T KOG1587|consen 285 ALEVSHSEPVTAVVWLQNE-HNTEFFSLSSDGSICSWDTDMLSLPV-EG----------LL---------LE-SKKHKGQ 342 (555)
T ss_pred cccccCCcCeEEEEEeccC-CCCceEEEecCCcEeeeeccccccch-hh----------cc---------cc-ccccccc
Confidence 2233444456666665543 33679999999999999887211100 00 00 00 0000000
Q ss_pred EeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCC
Q 000602 252 LVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGED 327 (1398)
Q Consensus 252 l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~D 327 (1398)
-..-...+++++|.+ +-..++.|+++|.|.-=+-...+.......+.. .....|.+.|.++.++| ..|.+++ |
T Consensus 343 ~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~--~~~~~h~g~v~~v~~nPF~~k~fls~g-D 419 (555)
T KOG1587|consen 343 QSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGH--STFITHIGPVYAVSRNPFYPKNFLSVG-D 419 (555)
T ss_pred ccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccccccccc--ccccccCcceEeeecCCCccceeeeec-c
Confidence 012235678899988 456789999999987744333322100000111 25667889999999984 5666666 9
Q ss_pred CcEEEEcC--CCceEEEEecccCccEEEEEEcCCCC-EEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEee
Q 000602 328 CTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (1398)
Q Consensus 328 g~i~vWd~--~g~~l~~l~~h~~~~V~sl~~spdg~-~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~ 404 (1398)
.+++||.. ...++..+..+.. .|++++|||... .++++..||.+.+||+...... .+...
T Consensus 420 W~vriWs~~~~~~Pl~~~~~~~~-~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~---------------Pv~s~- 482 (555)
T KOG1587|consen 420 WTVRIWSEDVIASPLLSLDSSPD-YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEE---------------PVLSQ- 482 (555)
T ss_pred ceeEeccccCCCCcchhhhhccc-eeeeeEEcCcCceEEEEEcCCCceehhhhhccccC---------------Ccccc-
Confidence 99999997 4566777777766 599999999764 7788888999999999432111 11111
Q ss_pred eCCCccceeeccCCCCcEEEEEEecCCeEEEEE-cCCcEEEEEee
Q 000602 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHTKLC 448 (1398)
Q Consensus 405 ~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t-~~g~i~~~~l~ 448 (1398)
.-.....+.+.++++|++++.+ ..|.++.+++.
T Consensus 483 -----------~~~~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~ 516 (555)
T KOG1587|consen 483 -----------KVCSPALTRVRWSPNGKLLAVGDANGTTHILKLS 516 (555)
T ss_pred -----------cccccccceeecCCCCcEEEEecCCCcEEEEEcC
Confidence 1113456677788888888776 46777766664
|
|
| >KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.8e-10 Score=121.76 Aligned_cols=214 Identities=13% Similarity=0.089 Sum_probs=153.5
Q ss_pred eEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCE
Q 000602 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (1398)
Q Consensus 180 ~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I 259 (1398)
.+++.++ ++|...+|.+....+|.|+.... ....++.+++..|...|
T Consensus 12 pitchAw---n~drt~iAv~~~~~evhiy~~~~------------------------------~~~w~~~htls~Hd~~v 58 (361)
T KOG1523|consen 12 PITCHAW---NSDRTQIAVSPNNHEVHIYSMLG------------------------------ADLWEPAHTLSEHDKIV 58 (361)
T ss_pred ceeeeee---cCCCceEEeccCCceEEEEEecC------------------------------CCCceeceehhhhCcce
Confidence 3566666 78999999999999999999871 11356788999999999
Q ss_pred EEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCC
Q 000602 260 FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDG 337 (1398)
Q Consensus 260 ~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g 337 (1398)
++|.|+|..+.|++|+.|+..++|....+.. .++. ..+..++...+++.|+ ++.|++|+.-..|.||-+++
T Consensus 59 tgvdWap~snrIvtcs~drnayVw~~~~~~~-----Wkpt--lvLlRiNrAAt~V~WsP~enkFAVgSgar~isVcy~E~ 131 (361)
T KOG1523|consen 59 TGVDWAPKSNRIVTCSHDRNAYVWTQPSGGT-----WKPT--LVLLRINRAATCVKWSPKENKFAVGSGARLISVCYYEQ 131 (361)
T ss_pred eEEeecCCCCceeEccCCCCccccccCCCCe-----eccc--eeEEEeccceeeEeecCcCceEEeccCccEEEEEEEec
Confidence 9999999999999999999999999954433 2222 2777889999999999 48999999999999999855
Q ss_pred ceEEE----Ee-cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccce
Q 000602 338 KQLKM----IK-EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQI 412 (1398)
Q Consensus 338 ~~l~~----l~-~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~ 412 (1398)
+.--- ++ .+.. .|.+++|+|++-+|++|+.|+..|++..--+.+..-+... -+.-++|- ....
T Consensus 132 ENdWWVsKhikkPirS-tv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~----------pWgsk~PF-G~lm 199 (361)
T KOG1523|consen 132 ENDWWVSKHIKKPIRS-TVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPT----------PWGSKMPF-GQLM 199 (361)
T ss_pred ccceehhhhhCCcccc-ceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCC----------CCccCCcH-HHHH
Confidence 43221 21 2233 5899999999999999999999999987222211111000 00000000 0111
Q ss_pred eeccCCCCcEEEEEEecCCeEEEEE-cCCcEEEE
Q 000602 413 RLTDSKSEYVRCLHLTSEDTLYIAT-NHGYLYHT 445 (1398)
Q Consensus 413 ~~~~~~~~~V~~lafs~dg~llv~t-~~g~i~~~ 445 (1398)
..+....+.++.+.|+|+|..|+.. .++.+...
T Consensus 200 ~E~~~~ggwvh~v~fs~sG~~lawv~Hds~v~~~ 233 (361)
T KOG1523|consen 200 SEASSSGGWVHGVLFSPSGNRLAWVGHDSTVSFV 233 (361)
T ss_pred HhhccCCCceeeeEeCCCCCEeeEecCCCceEEe
Confidence 1222456789999999999887765 45555543
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.23 E-value=1.1e-10 Score=130.62 Aligned_cols=197 Identities=16% Similarity=0.143 Sum_probs=141.1
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeE
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRV 99 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V 99 (1398)
.+++|+ ++ |..|++|. ||++|||++.+...+.....|++ .|.+++|+ ||| .+|++-+....
T Consensus 148 k~vaf~--~~----gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~-eV~DL~FS-------~dg----k~lasig~d~~ 209 (398)
T KOG0771|consen 148 KVVAFN--GD----GSKLATGGTDGTLRVWEWPSMLTILEEIAHHA-EVKDLDFS-------PDG----KFLASIGADSA 209 (398)
T ss_pred eEEEEc--CC----CCEeeeccccceEEEEecCcchhhhhhHhhcC-ccccceeC-------CCC----cEEEEecCCce
Confidence 689999 88 89999987 99999999888777777776776 69999999 998 67777664499
Q ss_pred EEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC-----cEEEEEECCCeEEEEEcCCCeE---EE
Q 000602 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-----RSLAIGCSDNSIRVWDISNSSI---IL 171 (1398)
Q Consensus 100 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg-----~~Latgs~Dg~V~vWd~~~~~~---~~ 171 (1398)
+||+.++... .. ..+...-......+.|+. ++ ..++.....+.|+.||+..... +.
T Consensus 210 ~VW~~~~g~~------------~a-~~t~~~k~~~~~~cRF~~---d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l~ 273 (398)
T KOG0771|consen 210 RVWSVNTGAA------------LA-RKTPFSKDEMFSSCRFSV---DNAQETLRLAASQFPGGGVRLCDISLWSGSNFLR 273 (398)
T ss_pred EEEEeccCch------------hh-hcCCcccchhhhhceecc---cCCCceEEEEEecCCCCceeEEEeeeeccccccc
Confidence 9999987420 00 011122333456777876 44 2233334566777777643222 11
Q ss_pred EEc-cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEE
Q 000602 172 EVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1398)
Q Consensus 172 ~l~-~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~ 250 (1398)
..+ ......+.+++. +++|++++.|+.||.|.|++.. +-+.++
T Consensus 274 ~~~~~~~~~siSsl~V---S~dGkf~AlGT~dGsVai~~~~---------------------------------~lq~~~ 317 (398)
T KOG0771|consen 274 LRKKIKRFKSISSLAV---SDDGKFLALGTMDGSVAIYDAK---------------------------------SLQRLQ 317 (398)
T ss_pred hhhhhhccCcceeEEE---cCCCcEEEEeccCCcEEEEEec---------------------------------eeeeeE
Confidence 111 111123566776 8899999999999999999987 333333
Q ss_pred E-EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 251 R-LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 251 ~-l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
. -..|...|+.|.|+||.+++++.+.|..+++..+..
T Consensus 318 ~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l~v 355 (398)
T KOG0771|consen 318 YVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKLAV 355 (398)
T ss_pred eehhhheeeeeeEEEcCCcCcccccccCCceeEEEEee
Confidence 3 357999999999999999999999999999988765
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-10 Score=126.64 Aligned_cols=242 Identities=17% Similarity=0.153 Sum_probs=155.0
Q ss_pred CCCEEEEEeCCcEEEEECCCCeEE----EEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCC
Q 000602 34 SLPFLLAGSGSQVLLYDLEAGTLI----RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELS 109 (1398)
Q Consensus 34 ~g~lLaag~dg~I~Iwd~~tg~~l----~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~ 109 (1398)
.|.+|+-.-+..++||+...+..+ .+.. +.+..-.+=+|... ...|.+ -.+++.++-+.|.+.|.....
T Consensus 134 ~gd~lcFnvg~~lyv~~~~g~~~~~~pi~k~~-y~gt~P~cHdfn~~--~a~~~g---~dllIGf~tGqvq~idp~~~~- 206 (636)
T KOG2394|consen 134 KGDRLCFNVGRELYVYSYRGAADLSKPIDKRE-YKGTSPTCHDFNSF--TATPKG---LDLLIGFTTGQVQLIDPINFE- 206 (636)
T ss_pred CCCEEEEecCCeEEEEEccCcchhccchhhhc-ccCCCCceeccccc--ccCCCC---cceEEeeccCceEEecchhhH-
Confidence 366776666788999998754322 1111 12112223334211 122554 368888888999998876421
Q ss_pred CCCCCCCcccccceeeeecc--cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEee
Q 000602 110 PNSQYQPETCVNLSLVQSLP--RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLW 187 (1398)
Q Consensus 110 ~~~~~~~~~~~~~~~~~~l~--~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~ 187 (1398)
...+.... -....|+|+.|.|. +...++.+-.+|.+.+||.. +.+......+..
T Consensus 207 ------------~sklfne~r~i~ktsvT~ikWvpg--~~~~Fl~a~~sGnlyly~~~-------~~~~~t~p~~~~--- 262 (636)
T KOG2394|consen 207 ------------VSKLFNEERLINKSSVTCIKWVPG--SDSLFLVAHASGNLYLYDKE-------IVCGATAPSYQA--- 262 (636)
T ss_pred ------------HHHhhhhcccccccceEEEEEEeC--CCceEEEEEecCceEEeecc-------ccccCCCCcccc---
Confidence 00000011 12368999999992 34456667789999999872 122222222221
Q ss_pred cCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC
Q 000602 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1398)
Q Consensus 188 ~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd 267 (1398)
-+++..++.. .|.-. ....++..+.--++.|+..+|+||
T Consensus 263 --~k~~~~f~i~-------t~ksk--------------------------------~~rNPv~~w~~~~g~in~f~FS~D 301 (636)
T KOG2394|consen 263 --LKDGDQFAIL-------TSKSK--------------------------------KTRNPVARWHIGEGSINEFAFSPD 301 (636)
T ss_pred --cCCCCeeEEe-------eeecc--------------------------------ccCCccceeEeccccccceeEcCC
Confidence 1233333322 22222 122344455445679999999999
Q ss_pred CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEe
Q 000602 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1398)
Q Consensus 268 g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~ 344 (1398)
|++||+.|.||.+||+|+.+..+ .- ....--+...|++|+ +++|++|++|.-|.||.+ +.+.+..=+
T Consensus 302 G~~LA~VSqDGfLRvF~fdt~eL-----lg-----~mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~erRVVARGq 371 (636)
T KOG2394|consen 302 GKYLATVSQDGFLRIFDFDTQEL-----LG-----VMKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEERRVVARGQ 371 (636)
T ss_pred CceEEEEecCceEEEeeccHHHH-----HH-----HHHhhccceEEEEEcCCccEEEecCCcceEEEEEeccceEEEecc
Confidence 99999999999999999998655 22 223334578999999 689999999999999999 888889999
Q ss_pred cccCccEEEEEEcC
Q 000602 345 EHIGRGIWRCLYDS 358 (1398)
Q Consensus 345 ~h~~~~V~sl~~sp 358 (1398)
+|+. -|..++|+|
T Consensus 372 GHkS-WVs~VaFDp 384 (636)
T KOG2394|consen 372 GHKS-WVSVVAFDP 384 (636)
T ss_pred cccc-ceeeEeecc
Confidence 9999 599999983
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=7.2e-09 Score=112.15 Aligned_cols=236 Identities=12% Similarity=0.139 Sum_probs=160.0
Q ss_pred CcEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECC-CCeEEEEEEeee-CccEEEEEEec
Q 000602 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLE-AGTLIRPFQVFH-GIRLHGISCNF 75 (1398)
Q Consensus 4 ~tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~-tg~~l~~~~~~~-~~~V~~i~fs~ 75 (1398)
+.|.|||-...+ ...+|.+|.+. ++ .|++.-.+.|.||... +.+.++.+.... ...+.+++-+
T Consensus 75 NkviIWDD~k~~~i~el~f~~~I~~V~l~--r~------riVvvl~~~I~VytF~~n~k~l~~~et~~NPkGlC~~~~~- 145 (346)
T KOG2111|consen 75 NKVIIWDDLKERCIIELSFNSEIKAVKLR--RD------RIVVVLENKIYVYTFPDNPKLLHVIETRSNPKGLCSLCPT- 145 (346)
T ss_pred ceEEEEecccCcEEEEEEeccceeeEEEc--CC------eEEEEecCeEEEEEcCCChhheeeeecccCCCceEeecCC-
Confidence 468999944443 67899999999 65 6777778899999987 556777665422 2223333322
Q ss_pred cccccCCCCccceeEEEEEc--CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE
Q 000602 76 INCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 76 ~~~~~~pdg~~~~~~la~~g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg 153 (1398)
.+ ..+||.=| -|.|+|-|+.... ...-..+..|...|.|++.+- +|.+|||+
T Consensus 146 ------~~----k~~LafPg~k~GqvQi~dL~~~~-------------~~~p~~I~AH~s~Iacv~Ln~---~Gt~vATa 199 (346)
T KOG2111|consen 146 ------SN----KSLLAFPGFKTGQVQIVDLASTK-------------PNAPSIINAHDSDIACVALNL---QGTLVATA 199 (346)
T ss_pred ------CC----ceEEEcCCCccceEEEEEhhhcC-------------cCCceEEEcccCceeEEEEcC---CccEEEEe
Confidence 22 14555555 5899999997532 112346779999999999999 99999999
Q ss_pred ECCCe-EEEEEcCCCeEEEEEc-cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCC
Q 000602 154 CSDNS-IRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 154 s~Dg~-V~vWd~~~~~~~~~l~-~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
+..|+ |||||..+|..+.+++ +.....+|+++| +|+..+||+.+..|+|+|+.++........ . | +.
T Consensus 200 StkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaF---Sp~~s~LavsSdKgTlHiF~l~~~~~~~~~----~-S---Sl 268 (346)
T KOG2111|consen 200 STKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAF---SPNSSWLAVSSDKGTLHIFSLRDTENTEDE----S-S---SL 268 (346)
T ss_pred ccCcEEEEEEEcCCCcEeeeeecCCchheEEEEEe---CCCccEEEEEcCCCeEEEEEeecCCCCccc----c-c---cc
Confidence 99997 7999999999999887 555678999998 899999999999999999999832211100 0 0 00
Q ss_pred CCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 000602 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1398)
Q Consensus 232 ~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~ 286 (1398)
...+ ..+-..-.+...+..+.-..+...-++|-.+.+.++..+.||+-+-+.+.
T Consensus 269 ~~~~-~~lpky~~S~wS~~~f~l~~~~~~~~~fg~~~nsvi~i~~Dgsy~k~~f~ 322 (346)
T KOG2111|consen 269 SFKR-LVLPKYFSSEWSFAKFQLPQGTQCIIAFGSETNTVIAICADGSYYKFKFD 322 (346)
T ss_pred cccc-cccchhcccceeEEEEEccCCCcEEEEecCCCCeEEEEEeCCcEEEEEec
Confidence 0000 00000001112233344446778888998887777777788876554443
|
|
| >KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=99.23 E-value=9.6e-09 Score=111.23 Aligned_cols=233 Identities=12% Similarity=0.174 Sum_probs=157.1
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeee-CccEEEEEEeccccccCCCCccceeEEEEEcC-
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFGE- 96 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~-~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd- 96 (1398)
....++|+ .| ..-+++|.+.-.+||+++--+...+-+.+. +..+.-|-|. .+ .+..++|.
T Consensus 7 ~~lsvs~N--QD----~ScFava~~~Gfriyn~~P~ke~~~r~~~~~G~~~veMLfR-------~N-----~laLVGGg~ 68 (346)
T KOG2111|consen 7 KTLSVSFN--QD----HSCFAVATDTGFRIYNCDPFKESASRQFIDGGFKIVEMLFR-------SN-----YLALVGGGS 68 (346)
T ss_pred ceeEEEEc--cC----CceEEEEecCceEEEecCchhhhhhhccccCchhhhhHhhh-------hc-----eEEEecCCC
Confidence 35569999 77 678999998889999997644322222111 2233334443 22 33344442
Q ss_pred ------CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC-CCeE
Q 000602 97 ------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSI 169 (1398)
Q Consensus 97 ------~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~-~~~~ 169 (1398)
..|.|||=.. .+++..+. ...+|.+|.+.+ .+|++.. .+.|.||... +.+.
T Consensus 69 ~pky~pNkviIWDD~k---------------~~~i~el~-f~~~I~~V~l~r-----~riVvvl-~~~I~VytF~~n~k~ 126 (346)
T KOG2111|consen 69 RPKYPPNKVIIWDDLK---------------ERCIIELS-FNSEIKAVKLRR-----DRIVVVL-ENKIYVYTFPDNPKL 126 (346)
T ss_pred CCCCCCceEEEEeccc---------------CcEEEEEE-eccceeeEEEcC-----CeEEEEe-cCeEEEEEcCCChhh
Confidence 4799999321 34555553 568899999977 5566554 7899999997 4455
Q ss_pred EEEEc---cCCcceEEEEEeecCCCCCcEEEE-EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000602 170 ILEVH---SPERCLLYSMKLWGDNLEALRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1398)
Q Consensus 170 ~~~l~---~~~~~~~~s~~~~~~s~d~~~las-gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1398)
+..+. .|.+ +.++. + ..+..+||- |-.-|+|+|-|+...+
T Consensus 127 l~~~et~~NPkG--lC~~~--~-~~~k~~LafPg~k~GqvQi~dL~~~~------------------------------- 170 (346)
T KOG2111|consen 127 LHVIETRSNPKG--LCSLC--P-TSNKSLLAFPGFKTGQVQIVDLASTK------------------------------- 170 (346)
T ss_pred eeeeecccCCCc--eEeec--C-CCCceEEEcCCCccceEEEEEhhhcC-------------------------------
Confidence 55444 2333 22322 1 223334443 6677999999988211
Q ss_pred eeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCe-EEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEE
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFII 322 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~-V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~ 322 (1398)
..+-..+..|...|.+++.+-+|..+||+|..|+ |||||..++.. +++++ .-...+.|.+++|++ .+|+
T Consensus 171 ~~~p~~I~AH~s~Iacv~Ln~~Gt~vATaStkGTLIRIFdt~~g~~-----l~E~R---RG~d~A~iy~iaFSp~~s~La 242 (346)
T KOG2111|consen 171 PNAPSIINAHDSDIACVALNLQGTLVATASTKGTLIRIFDTEDGTL-----LQELR---RGVDRADIYCIAFSPNSSWLA 242 (346)
T ss_pred cCCceEEEcccCceeEEEEcCCccEEEEeccCcEEEEEEEcCCCcE-----eeeee---cCCchheEEEEEeCCCccEEE
Confidence 1123567899999999999999999999999997 79999999887 45432 112346799999994 7999
Q ss_pred EEeCCCcEEEEcC
Q 000602 323 TAGEDCTCRVWGS 335 (1398)
Q Consensus 323 sgs~Dg~i~vWd~ 335 (1398)
.++..||+.||.+
T Consensus 243 vsSdKgTlHiF~l 255 (346)
T KOG2111|consen 243 VSSDKGTLHIFSL 255 (346)
T ss_pred EEcCCCeEEEEEe
Confidence 9999999999998
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.21 E-value=4.7e-08 Score=114.60 Aligned_cols=456 Identities=14% Similarity=0.149 Sum_probs=263.7
Q ss_pred eCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEe
Q 000602 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLK 142 (1398)
Q Consensus 64 ~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp 142 (1398)
.....+++.|+ ... .++|++| ||.++|..+.+.......-.--....+..-+++.||+..|.-+.|+.
T Consensus 13 nnvkL~c~~WN-------ke~----gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe 81 (1189)
T KOG2041|consen 13 NNVKLHCAEWN-------KES----GYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNE 81 (1189)
T ss_pred CCceEEEEEEc-------ccC----CeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecc
Confidence 34578999999 443 5888888 89999999986442111100000112455678999999999999998
Q ss_pred ecCCCcEEEEEECCCeEEEEEcCCCeEEEEE-ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCC
Q 000602 143 VCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNS 221 (1398)
Q Consensus 143 ~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l-~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~ 221 (1398)
..+.|-|...+|.|.||-+.+|...... ....++.+.++.| +.||..|+..-.||.|.+=.++.
T Consensus 82 ---~~QKLTtSDt~GlIiVWmlykgsW~EEMiNnRnKSvV~SmsW---n~dG~kIcIvYeDGavIVGsvdG--------- 146 (1189)
T KOG2041|consen 82 ---NNQKLTTSDTSGLIIVWMLYKGSWCEEMINNRNKSVVVSMSW---NLDGTKICIVYEDGAVIVGSVDG--------- 146 (1189)
T ss_pred ---ccccccccCCCceEEEEeeecccHHHHHhhCcCccEEEEEEE---cCCCcEEEEEEccCCEEEEeecc---------
Confidence 8888989999999999999877653322 2344567788887 77899999999999999988772
Q ss_pred CCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc--CCCC-ceE
Q 000602 222 PEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDS-IEE 298 (1398)
Q Consensus 222 ~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~--~~~~-~~~ 298 (1398)
-+||...-.+.. ...+.|++|.+.++.+-..|.+.++|....-.. ..++ +..
T Consensus 147 ---------------NRIwgKeLkg~~----------l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~ 201 (1189)
T KOG2041|consen 147 ---------------NRIWGKELKGQL----------LAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNG 201 (1189)
T ss_pred ---------------ceecchhcchhe----------ccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEee
Confidence 234433222222 225789999998888888899999998754221 0001 111
Q ss_pred eeeeEEecCCccEEEEEEc-C---------CEEEEEeCCCcEEEEcC--CCceEEEEecccCccEEEEEEcCCCCEEEEE
Q 000602 299 VGSSVLYGHNARVWDCCLT-D---------SFIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1398)
Q Consensus 299 i~~~~~~gh~~~V~~l~~s-~---------~~l~sgs~Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~latg 366 (1398)
.+ .+......|..+.|. + ..|+.+-.+|.+.|-.- +..++-.-.+ - .|..+.|+++|..|+.+
T Consensus 202 tg--~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m-~~vgakWnh~G~vLAvc 276 (1189)
T KOG2041|consen 202 TG--IFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--M-KIVGAKWNHNGAVLAVC 276 (1189)
T ss_pred ee--eecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--c-EeecceecCCCcEEEEc
Confidence 11 222223346666664 1 57899999999988766 2333332222 2 37889999999999999
Q ss_pred EcCC---------cEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEE
Q 000602 367 GFDS---------AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT 437 (1398)
Q Consensus 367 g~Dg---------~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t 437 (1398)
|.|. .|.++..-| ..++.+......|+.++|-..|-.++..
T Consensus 277 G~~~da~~~~d~n~v~Fysp~G------------------------------~i~gtlkvpg~~It~lsWEg~gLriA~A 326 (1189)
T KOG2041|consen 277 GNDSDADEPTDSNKVHFYSPYG------------------------------HIVGTLKVPGSCITGLSWEGTGLRIAIA 326 (1189)
T ss_pred cCcccccCccccceEEEeccch------------------------------hheEEEecCCceeeeeEEcCCceEEEEE
Confidence 8763 233333222 2223333344578899998888888888
Q ss_pred cCCcEEEEEeecCCCceeEEE-------EeecC--CccEEEEeccCCCCC----------CcCCCCcEEEEEeCCCCEEE
Q 000602 438 NHGYLYHTKLCDMDSVNWNKI-------LQVSE--GMPIICMDLLSNEPK----------YPCGIDDWVALGDGKGNMTI 498 (1398)
Q Consensus 438 ~~g~i~~~~l~~~~~~~w~~i-------~~~~~--~~~i~~l~~~~~~~~----------~s~~~~~~la~gs~dG~I~I 498 (1398)
-++.++..++.. ..+|..+ .+..+ .+.|.-++...+... .+..+--.++.-..+|.|.-
T Consensus 327 vdsfiyfanIRP--~ykWgy~e~TvVy~y~~~e~p~y~i~Fwdtk~nek~vK~V~~~~~~a~~~ehCvL~~~~d~~~i~e 404 (1189)
T KOG2041|consen 327 VDSFIYFANIRP--EYKWGYIEETVVYVYQKEELPQYGIMFWDTKTNEKTVKTVTHFENMAFYREHCVLINRQDDGVIPE 404 (1189)
T ss_pred ecceEEEEeecc--cceEEEeeeEEEEEEccCCCcceEEEEEecccChhhhhhhcceeehheecccEEEEeccccCCCcc
Confidence 888888776643 2335322 22221 112222333222110 00111122333334444443
Q ss_pred EEE-cCCccccceeeeeee--ecCcccceeEEEEEe-cCCCcEEEEEcCCCcEEEEecCCCCCccccccC----------
Q 000602 499 VRV-VGDVHTPQLSFTFTW--SAGIERQLLGTYWCK-SLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS---------- 564 (1398)
Q Consensus 499 wd~-~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~-s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~---------- 564 (1398)
++. .+.. ....+.+.- .+.-+.+...+.-+| .-++.+++.++.+ .+.+|....+.....+...
T Consensus 405 ~s~le~~~--~~~~l~LCNSIGT~lD~kytdirP~Fv~vn~~~vviAS~e-~~~iWhy~~pK~~s~l~~~k~rkegr~h~ 481 (1189)
T KOG2041|consen 405 YSTLENRS--RVYFLQLCNSIGTSLDYKYTDIRPKFVCVNGICVVIASEE-RYFIWHYVLPKFNSVLAGVKIRKEGRFHG 481 (1189)
T ss_pred hhhhhccc--ceEEEeeecccCCcCCCCcceeeeeEEEecceEEEEeccc-cEEEEEEeccchhhhhhhhhhcccccccC
Confidence 311 1100 000111111 111111111111111 1345667766664 5778976544322222110
Q ss_pred -------ccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCc
Q 000602 565 -------KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 565 -------~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~ 612 (1398)
....+..-..-..+...+|.+++.| .++|.+|-..|.|+=|.+++.
T Consensus 482 Ddtp~ga~d~~l~ys~kt~~G~~DpICAl~~s--dk~l~vareSG~I~rySl~nv 534 (1189)
T KOG2041|consen 482 DDTPEGAQDRTLEYSTKTLLGSKDPICALCIS--DKFLMVARESGGIYRYSLNNV 534 (1189)
T ss_pred CCCccchhhceeeccceeeccCCCcceeeeec--ceEEEEEeccCceEEEEecce
Confidence 0001111111123556788888887 789999999999999999875
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.19 E-value=8.7e-10 Score=119.65 Aligned_cols=271 Identities=16% Similarity=0.194 Sum_probs=170.9
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-----EEEEEEeee-----------CccEEEEEEecccccc
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFH-----------GIRLHGISCNFINCTE 80 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~-----~l~~~~~~~-----------~~~V~~i~fs~~~~~~ 80 (1398)
.-|.+|.|. -. |.+||+|. ||.|.+|.-.... ....++.|+ ..+|..|.|.
T Consensus 26 diis~vef~--~~----Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~------ 93 (433)
T KOG1354|consen 26 DIISAVEFD--HY----GERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL------ 93 (433)
T ss_pred cceeeEEee--cc----cceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceec------
Confidence 447899999 55 89999999 7999999754321 223343333 2568888888
Q ss_pred CCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCC--------------------cccccceeeeec-ccCCCcEEEEE
Q 000602 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQP--------------------ETCVNLSLVQSL-PRLSHWVFDVC 139 (1398)
Q Consensus 81 ~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~--------------------~~~~~~~~~~~l-~~h~~~V~~v~ 139 (1398)
++++ ...+|++..|++|++|.+.......+.+.- +..+...+.+.+ .+|+-.|+++.
T Consensus 94 -~~~n-~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS 171 (433)
T KOG1354|consen 94 -DDGN-LAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSIS 171 (433)
T ss_pred -CCCC-ccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeee
Confidence 4432 236778888999999999754322211110 011112222222 36788899999
Q ss_pred EEeecCCCcEEEEEECCCeEEEEEcCCCeE---EEEEccCC----cceEEEEEeecCCCCCcEEEEEECCCeEEEEEccc
Q 000602 140 FLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1398)
Q Consensus 140 fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~---~~~l~~~~----~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~ 212 (1398)
++. |+..++++ .|=.|-+|+++--.. +..++.+. ..++.+..|++. ...+++-.+..|+|++-|++.
T Consensus 172 ~Ns---D~Et~lSA-DdLRINLWnlei~d~sFnIVDIKP~nmEeLteVITsaEFhp~--~cn~f~YSSSKGtIrLcDmR~ 245 (433)
T KOG1354|consen 172 VNS---DKETFLSA-DDLRINLWNLEIIDQSFNIVDIKPANMEELTEVITSAEFHPH--HCNVFVYSSSKGTIRLCDMRQ 245 (433)
T ss_pred ecC---ccceEeec-cceeeeeccccccCCceeEEEccccCHHHHHHHHhhhccCHh--HccEEEEecCCCcEEEeechh
Confidence 998 99988876 578899999964222 22232221 224556666543 356777788899999999982
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
.++++..-+++..+.......-+.+--..|..+.|+++|+++++=+. -+|++||+.....+
T Consensus 246 -----------------~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~p- 306 (433)
T KOG1354|consen 246 -----------------SALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKP- 306 (433)
T ss_pred -----------------hhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCc-
Confidence 11222222333222222222234445578899999999999998654 48999999654331
Q ss_pred CCCceEeeeeEEecCC------------cc---EEEEEEcC--CEEEEEeCCCcEEEEcC
Q 000602 293 SDSIEEVGSSVLYGHN------------AR---VWDCCLTD--SFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~------------~~---V~~l~~s~--~~l~sgs~Dg~i~vWd~ 335 (1398)
+. +..-|. .. -..++|+| .+++||+.....++++.
T Consensus 307 ---v~-----t~~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~ 358 (433)
T KOG1354|consen 307 ---VE-----TYPVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNL 358 (433)
T ss_pred ---ce-----EEeehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecC
Confidence 22 222222 11 24567775 59999999999999997
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.19 E-value=3.2e-09 Score=114.56 Aligned_cols=366 Identities=12% Similarity=0.112 Sum_probs=211.4
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEE-EEEECCCeEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIR 160 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~L-atgs~Dg~V~ 160 (1398)
|+| +.+|+..+..+.|-|.++ ++..+.+.. -+.|.-+.|.. |..++ .....|+.|.
T Consensus 18 p~g----~yiAs~~~yrlviRd~~t---------------lq~~qlf~c-ldki~yieW~a---ds~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 18 PCG----NYIASLSRYRLVIRDSET---------------LQLHQLFLC-LDKIVYIEWKA---DSCHILCVAYKDPKVQ 74 (447)
T ss_pred CCC----CeeeeeeeeEEEEeccch---------------hhHHHHHHH-HHHhhheeeec---cceeeeeeeeccceEE
Confidence 998 799999988888888775 333332222 35677788887 66555 4457788999
Q ss_pred EEEcCCCeEEEEEccCCcceEEEEEeecCCCCCc-EEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~-~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
+|++...+-..++...... +.+..+ +|||. .|.+...+-.|.+|.+.
T Consensus 75 vwsl~Qpew~ckIdeg~ag-ls~~~W---SPdgrhiL~tseF~lriTVWSL~---------------------------- 122 (447)
T KOG4497|consen 75 VWSLVQPEWYCKIDEGQAG-LSSISW---SPDGRHILLTSEFDLRITVWSLN---------------------------- 122 (447)
T ss_pred EEEeecceeEEEeccCCCc-ceeeeE---CCCcceEeeeecceeEEEEEEec----------------------------
Confidence 9999988887777765544 334555 78895 55566677899999998
Q ss_pred cccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCC
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDS 319 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~ 319 (1398)
+.+. .-+.-....+..++|+|||++.+.++.-...-..++...+. ...++ .+.-.+-..+.+.|+|+
T Consensus 123 -----t~~~-~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCkdyv~i~~c~~-----W~ll~--~f~~dT~DltgieWsPd 189 (447)
T KOG4497|consen 123 -----TQKG-YLLPHPKTNVKGYAFHPDGQFCAILSRRDCKDYVQISSCKA-----WILLK--EFKLDTIDLTGIEWSPD 189 (447)
T ss_pred -----ccee-EEecccccCceeEEECCCCceeeeeecccHHHHHHHHhhHH-----HHHHH--hcCCCcccccCceECCC
Confidence 2211 12222345568999999999998887642211122211110 11111 22333445567778752
Q ss_pred EEEEEeCCCcEEEEcC--CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc-----CCCCcc--cccCCC-
Q 000602 320 FIITAGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-----QAFLPG--SLESHP- 389 (1398)
Q Consensus 320 ~l~sgs~Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl-----~~~~l~--~l~~~~- 389 (1398)
++.+.|||- +-+ + +..+.+-++..++|+|.+++|+.|+.|+.+|+-+- -++.+. +.....
T Consensus 190 -------g~~laVwd~~Leyk-v--~aYe~~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~ 259 (447)
T KOG4497|consen 190 -------GNWLAVWDNVLEYK-V--YAYERGLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTL 259 (447)
T ss_pred -------CcEEEEecchhhhe-e--eeeeeccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchh
Confidence 455678986 322 2 22344346999999999999999999999998543 222111 111000
Q ss_pred ---------------ccccccC---------Cc-cEEE-----eeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEcC
Q 000602 390 ---------------EAKEFNG---------RT-EIFS-----IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1398)
Q Consensus 390 ---------------~~v~~~~---------~~-~~~~-----~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~ 439 (1398)
....|.+ .. .++. ++.+...... -.....-.+.-++|++|..++++-++
T Consensus 260 ~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~t-D~pnPk~g~g~lafs~Ds~y~aTrnd 338 (447)
T KOG4497|consen 260 HLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPT-DFPNPKCGAGKLAFSCDSTYAATRND 338 (447)
T ss_pred hhhhhhhcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCC-CCCCcccccceeeecCCceEEeeecC
Confidence 0000100 00 0000 0000000000 00111245778999999988888777
Q ss_pred CcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecC
Q 000602 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1398)
Q Consensus 440 g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~ 519 (1398)
..-...-+|+.+..+...++. ...+|......+ ....+++.....++++|......... ...
T Consensus 339 ~~PnalW~Wdlq~l~l~avLi--Qk~piraf~WdP--------~~prL~vctg~srLY~W~psg~~~V~--------vP~ 400 (447)
T KOG4497|consen 339 KYPNALWLWDLQNLKLHAVLI--QKHPIRAFEWDP--------GRPRLVVCTGKSRLYFWAPSGPRVVG--------VPK 400 (447)
T ss_pred CCCceEEEEechhhhhhhhhh--hccceeEEEeCC--------CCceEEEEcCCceEEEEcCCCceEEe--------cCC
Confidence 765555567766544222221 134666666643 34456666666789999876532221 112
Q ss_pred cccceeEEEEEecCCCcEEEEEcCCCc
Q 000602 520 IERQLLGTYWCKSLGHRFIFTADPKGR 546 (1398)
Q Consensus 520 ~~~~~l~~~~~~s~d~~~L~s~s~dg~ 546 (1398)
+.-++.. +++..+|.+++-.+.|..
T Consensus 401 ~GF~i~~--l~W~~~g~~i~l~~kDaf 425 (447)
T KOG4497|consen 401 KGFNIQK--LQWLQPGEFIVLCGKDAF 425 (447)
T ss_pred CCceeee--EEecCCCcEEEEEcCCce
Confidence 2223333 567788888888877754
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.18 E-value=7.9e-10 Score=135.34 Aligned_cols=227 Identities=12% Similarity=0.051 Sum_probs=148.7
Q ss_pred CCcEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEe-C---CcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 3 KKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS-G---SQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 3 D~tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~-d---g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
+..|.+||..... +..++.+.+|| || |+.|+..+ + +.|++||+.+++... +....+ ....++
T Consensus 183 ~~~i~i~d~dg~~~~~lt~~~~~v~~p~wS--PD----G~~la~~s~~~~~~~i~i~dl~tg~~~~-l~~~~g-~~~~~~ 254 (429)
T PRK01742 183 PYEVRVADYDGFNQFIVNRSSQPLMSPAWS--PD----GSKLAYVSFENKKSQLVVHDLRSGARKV-VASFRG-HNGAPA 254 (429)
T ss_pred eEEEEEECCCCCCceEeccCCCccccceEc--CC----CCEEEEEEecCCCcEEEEEeCCCCceEE-EecCCC-ccCcee
Confidence 4679999976543 45679999999 99 88887765 2 479999999885422 222222 345688
Q ss_pred EeccccccCCCCccceeEEEE-E-cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEE
Q 000602 73 CNFINCTEGSVSTRVTFEVAL-F-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~-~-gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~L 150 (1398)
|+ ||| ..|+. . .++.+.||.++... .....+..+...+.+..|+| ||+.|
T Consensus 255 wS-------PDG----~~La~~~~~~g~~~Iy~~d~~~--------------~~~~~lt~~~~~~~~~~wSp---DG~~i 306 (429)
T PRK01742 255 FS-------PDG----SRLAFASSKDGVLNIYVMGANG--------------GTPSQLTSGAGNNTEPSWSP---DGQSI 306 (429)
T ss_pred EC-------CCC----CEEEEEEecCCcEEEEEEECCC--------------CCeEeeccCCCCcCCEEECC---CCCEE
Confidence 99 998 44444 3 36777777655321 11234555667788999999 99977
Q ss_pred EEEE-CCCeEEEEEcCCC-eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCC
Q 000602 151 AIGC-SDNSIRVWDISNS-SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 151 atgs-~Dg~V~vWd~~~~-~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
+..+ .++...||++... .....+ .+.. +...+ +|++..|+..+.++ +.+||+.
T Consensus 307 ~f~s~~~g~~~I~~~~~~~~~~~~l-~~~~---~~~~~---SpDG~~ia~~~~~~-i~~~Dl~----------------- 361 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSASGGGASLV-GGRG---YSAQI---SADGKTLVMINGDN-VVKQDLT----------------- 361 (429)
T ss_pred EEEECCCCCceEEEEECCCCCeEEe-cCCC---CCccC---CCCCCEEEEEcCCC-EEEEECC-----------------
Confidence 7655 5788888887532 222222 2221 33333 78999998887755 5568887
Q ss_pred CCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC--CcccCCCCceEeeeeEEec
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA--EYWKDSDSIEEVGSSVLYG 306 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~--~~~~~~~~~~~i~~~~~~g 306 (1398)
++........+ ....+.|+|||++|+.++.++.+.+|.+.. ++. . ..+.+
T Consensus 362 ----------------~g~~~~lt~~~--~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~-----~-----~~l~~ 413 (429)
T PRK01742 362 ----------------SGSTEVLSSTF--LDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF-----K-----ARLPG 413 (429)
T ss_pred ----------------CCCeEEecCCC--CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCc-----e-----EEccC
Confidence 22221111111 235678999999999999999888887642 332 2 26667
Q ss_pred CCccEEEEEEcC
Q 000602 307 HNARVWDCCLTD 318 (1398)
Q Consensus 307 h~~~V~~l~~s~ 318 (1398)
|.+.+...+|++
T Consensus 414 ~~g~~~~p~wsp 425 (429)
T PRK01742 414 SDGQVKFPAWSP 425 (429)
T ss_pred CCCCCCCcccCC
Confidence 888888888875
|
|
| >KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.7e-10 Score=127.62 Aligned_cols=200 Identities=18% Similarity=0.165 Sum_probs=141.2
Q ss_pred EEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC
Q 000602 69 HGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1398)
Q Consensus 69 ~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg 147 (1398)
..++|+ ++| ..+++++ |+++|||++.. ...+..+..|...|.++.|+| ||
T Consensus 148 k~vaf~-------~~g----s~latgg~dg~lRv~~~Ps---------------~~t~l~e~~~~~eV~DL~FS~---dg 198 (398)
T KOG0771|consen 148 KVVAFN-------GDG----SKLATGGTDGTLRVWEWPS---------------MLTILEEIAHHAEVKDLDFSP---DG 198 (398)
T ss_pred eEEEEc-------CCC----CEeeeccccceEEEEecCc---------------chhhhhhHhhcCccccceeCC---CC
Confidence 456666 776 6888887 99999999864 445556678999999999999 99
Q ss_pred cEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEE-EEEeecCC-CCCcEEEEEE-CCCeEEEEEcccCCccccCCCCCC
Q 000602 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLY-SMKLWGDN-LEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 148 ~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~-s~~~~~~s-~d~~~lasgs-~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
+.|++-+.| ..+||+..++..+...........+ ..+|.... .+..++++-. .-+.|+.|++.
T Consensus 199 k~lasig~d-~~~VW~~~~g~~~a~~t~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~------------- 264 (398)
T KOG0771|consen 199 KFLASIGAD-SARVWSVNTGAALARKTPFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDIS------------- 264 (398)
T ss_pred cEEEEecCC-ceEEEEeccCchhhhcCCcccchhhhhceecccCCCceEEEEEecCCCCceeEEEee-------------
Confidence 999999999 9999999999777666533332222 23332211 1123444433 34567777765
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEE
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~ 304 (1398)
+|+..... +......-...|.+++.++||++++.|+.||.|-|++..+-+. ++ ...
T Consensus 265 --------------~w~~~~~l-~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~-----~~----~vk 320 (398)
T KOG0771|consen 265 --------------LWSGSNFL-RLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQR-----LQ----YVK 320 (398)
T ss_pred --------------eecccccc-chhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeee-----eE----eeh
Confidence 33322111 1112222345799999999999999999999999999988654 23 355
Q ss_pred ecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC
Q 000602 305 YGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 305 ~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~ 335 (1398)
..|...|+.+.|+| +++++-+.|....|..+
T Consensus 321 ~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~~l 353 (398)
T KOG0771|consen 321 EAHLGFVTGLTFSPDSRYLASVSSDNEAAVTKL 353 (398)
T ss_pred hhheeeeeeEEEcCCcCcccccccCCceeEEEE
Confidence 68999999999995 67777777877777665
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.17 E-value=1.1e-08 Score=112.12 Aligned_cols=210 Identities=15% Similarity=0.185 Sum_probs=133.2
Q ss_pred cceEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcC
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag-~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd 96 (1398)
-++..++|+ +- ---+|++ .|..|+|||-.+ ++...++......|.+++|. |.+. ..++++-.
T Consensus 99 ~dlr~~aWh--qH----~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawR-------Plsa---selavgCr 161 (445)
T KOG2139|consen 99 IDLRGVAWH--QH----IIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWR-------PLSA---SELAVGCR 161 (445)
T ss_pred cceeeEeec--hh----hhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEec-------cCCc---ceeeeeec
Confidence 456788888 53 2233444 489999999776 44445553333369999999 7763 56777767
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCCCeEEEEEcc
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHS 175 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~~~~~~l~~ 175 (1398)
+.|.+|..+....-......-..... .+...+|| .+|+++.|.+ ||..+++++. |..|.|||..++..+.-...
T Consensus 162 ~gIciW~~s~tln~~r~~~~~s~~~~-qvl~~pgh-~pVtsmqwn~---dgt~l~tAS~gsssi~iWdpdtg~~~pL~~~ 236 (445)
T KOG2139|consen 162 AGICIWSDSRTLNANRNIRMMSTHHL-QVLQDPGH-NPVTSMQWNE---DGTILVTASFGSSSIMIWDPDTGQKIPLIPK 236 (445)
T ss_pred ceeEEEEcCcccccccccccccccch-hheeCCCC-ceeeEEEEcC---CCCEEeecccCcceEEEEcCCCCCccccccc
Confidence 88999998753211100000000011 22344566 6899999999 9999999874 77899999998876544321
Q ss_pred CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 176 ~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
..+ .+.-+.| +||+.+|.+++.|+..++|... + ..... +..--
T Consensus 237 glg-g~slLkw---SPdgd~lfaAt~davfrlw~e~--------------------------q------~wt~e-rw~lg 279 (445)
T KOG2139|consen 237 GLG-GFSLLKW---SPDGDVLFAATCDAVFRLWQEN--------------------------Q------SWTKE-RWILG 279 (445)
T ss_pred CCC-ceeeEEE---cCCCCEEEEecccceeeeehhc--------------------------c------cceec-ceecc
Confidence 111 1223444 8999999999999999999765 0 11111 11123
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
.+.|....|+|+|++|+-+.. +.-++|.+.-
T Consensus 280 sgrvqtacWspcGsfLLf~~s-gsp~lysl~f 310 (445)
T KOG2139|consen 280 SGRVQTACWSPCGSFLLFACS-GSPRLYSLTF 310 (445)
T ss_pred CCceeeeeecCCCCEEEEEEc-CCceEEEEee
Confidence 458999999999998654433 2334555543
|
|
| >PRK01742 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.2e-09 Score=133.91 Aligned_cols=230 Identities=13% Similarity=0.075 Sum_probs=152.2
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----CCeEEEEEecCCCCCCCCCCCccc
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d~~V~vwdl~~~~~~~~~~~~~~~ 119 (1398)
..|.|||..... ...+..+.. .+...+|+ ||| ..|+..+ +..|.+||+.++.
T Consensus 184 ~~i~i~d~dg~~-~~~lt~~~~-~v~~p~wS-------PDG----~~la~~s~~~~~~~i~i~dl~tg~----------- 239 (429)
T PRK01742 184 YEVRVADYDGFN-QFIVNRSSQ-PLMSPAWS-------PDG----SKLAYVSFENKKSQLVVHDLRSGA----------- 239 (429)
T ss_pred EEEEEECCCCCC-ceEeccCCC-ccccceEc-------CCC----CEEEEEEecCCCcEEEEEeCCCCc-----------
Confidence 589999986544 344554443 69999999 998 4555433 2479999997532
Q ss_pred ccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-CCCeEEEE--EcCCCeEEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVW--DISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 120 ~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vW--d~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
.+.+..+.+|. ..++|+| ||+.|+.++ .+|.+.|| |+.++.. ..+..+ .....+..| +||+..|
T Consensus 240 --~~~l~~~~g~~---~~~~wSP---DG~~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~-~~~~~~~~w---SpDG~~i 306 (429)
T PRK01742 240 --RKVVASFRGHN---GAPAFSP---DGSRLAFASSKDGVLNIYVMGANGGTP-SQLTSG-AGNNTEPSW---SPDGQSI 306 (429)
T ss_pred --eEEEecCCCcc---CceeECC---CCCEEEEEEecCCcEEEEEEECCCCCe-EeeccC-CCCcCCEEE---CCCCCEE
Confidence 23444555554 3689999 999888765 67876665 5555543 333332 223445555 7888877
Q ss_pred EEEE-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE
Q 000602 197 ASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1398)
Q Consensus 197 asgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s 275 (1398)
+..+ .++...||++.. .+.....+ ++.+ ...+|+|||++|+..+
T Consensus 307 ~f~s~~~g~~~I~~~~~--------------------------------~~~~~~~l-~~~~--~~~~~SpDG~~ia~~~ 351 (429)
T PRK01742 307 LFTSDRSGSPQVYRMSA--------------------------------SGGGASLV-GGRG--YSAQISADGKTLVMIN 351 (429)
T ss_pred EEEECCCCCceEEEEEC--------------------------------CCCCeEEe-cCCC--CCccCCCCCCEEEEEc
Confidence 6554 678889998761 11111122 3443 4578999999998888
Q ss_pred CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC---CCceEEEEecccCcc
Q 000602 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS---DGKQLKMIKEHIGRG 350 (1398)
Q Consensus 276 ~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~---~g~~l~~l~~h~~~~ 350 (1398)
.++ +.+||+.++.. . .+..+ .....+.|+ +.+|+.++.++...+|++ +|+.+..+..|.+ .
T Consensus 352 ~~~-i~~~Dl~~g~~------~-----~lt~~-~~~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~g-~ 417 (429)
T PRK01742 352 GDN-VVKQDLTSGST------E-----VLSST-FLDESPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSDG-Q 417 (429)
T ss_pred CCC-EEEEECCCCCe------E-----EecCC-CCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCCC-C
Confidence 775 45599987754 1 11111 123456677 578999999998887775 7888889988887 4
Q ss_pred EEEEEEcCC
Q 000602 351 IWRCLYDSL 359 (1398)
Q Consensus 351 V~sl~~spd 359 (1398)
+...+|+|-
T Consensus 418 ~~~p~wsp~ 426 (429)
T PRK01742 418 VKFPAWSPY 426 (429)
T ss_pred CCCcccCCC
Confidence 888999874
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=7.6e-09 Score=119.18 Aligned_cols=279 Identities=15% Similarity=0.175 Sum_probs=183.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
+...-+.|..+ || |+|+++.+ -+.|+|||+....+ .|.-|-...+..+.+- .|. ....+..
T Consensus 50 ~p~ast~ik~s--~D----GqY~lAtG~YKP~ikvydlanLSL--KFERhlDae~V~feiL-------sDD--~SK~v~L 112 (703)
T KOG2321|consen 50 MPTASTRIKVS--PD----GQYLLATGTYKPQIKVYDLANLSL--KFERHLDAEVVDFEIL-------SDD--YSKSVFL 112 (703)
T ss_pred CccccceeEec--CC----CcEEEEecccCCceEEEEccccee--eeeecccccceeEEEe-------ccc--hhhheEe
Confidence 45567889999 99 88887654 49999999987554 3433333234333332 221 1244555
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
..|++|.+-.--.. . ....++ ..-.+++++.+ ... |++++....|.-++++.|+.+.-+
T Consensus 113 ~~DR~IefHak~G~-----h----------y~~RIP---~~GRDm~y~~~--scD-ly~~gsg~evYRlNLEqGrfL~P~ 171 (703)
T KOG2321|consen 113 QNDRTIEFHAKYGR-----H----------YRTRIP---KFGRDMKYHKP--SCD-LYLVGSGSEVYRLNLEQGRFLNPF 171 (703)
T ss_pred ecCceeeehhhcCe-----e----------eeeecC---cCCccccccCC--Ccc-EEEeecCcceEEEEcccccccccc
Confidence 55777766543210 0 000111 12245566541 334 445555667888899999988777
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
..... .++++.. ++...+|++|+.+|.|-.||.+.....+... ......
T Consensus 172 ~~~~~-~lN~v~i---n~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~---------------------------~~~~v~ 220 (703)
T KOG2321|consen 172 ETDSG-ELNVVSI---NEEHGLLACGTEDGVVEFWDPRDKSRVGTLD---------------------------AASSVN 220 (703)
T ss_pred ccccc-cceeeee---cCccceEEecccCceEEEecchhhhhheeee---------------------------cccccC
Confidence 64433 2444444 5667799999999999999998433222110 011122
Q ss_pred Ccc-----CCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC--ccEEEEEEc----CCEEE
Q 000602 254 GHE-----GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--ARVWDCCLT----DSFII 322 (1398)
Q Consensus 254 gH~-----~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~--~~V~~l~~s----~~~l~ 322 (1398)
.|. ..|+++.|+.+|-.++.|..+|.|.|||+++.+.. ....|. .+|..+.|. .+.++
T Consensus 221 s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl-----------~~kdh~~e~pi~~l~~~~~~~q~~v~ 289 (703)
T KOG2321|consen 221 SHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPL-----------LVKDHGYELPIKKLDWQDTDQQNKVV 289 (703)
T ss_pred CCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCce-----------eecccCCccceeeecccccCCCceEE
Confidence 233 34999999999999999999999999999997651 334444 467778885 24566
Q ss_pred EEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 323 TAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 323 sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
|. ....++|||- +|+....+..... +..+++-|++.+++++-.++.+..|=+
T Consensus 290 S~-Dk~~~kiWd~~~Gk~~asiEpt~~--lND~C~~p~sGm~f~Ane~~~m~~yyi 342 (703)
T KOG2321|consen 290 SM-DKRILKIWDECTGKPMASIEPTSD--LNDFCFVPGSGMFFTANESSKMHTYYI 342 (703)
T ss_pred ec-chHHhhhcccccCCceeeccccCC--cCceeeecCCceEEEecCCCcceeEEc
Confidence 55 4578999999 8998887766554 889999999999999999888877765
|
|
| >KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.8e-09 Score=112.56 Aligned_cols=346 Identities=14% Similarity=0.083 Sum_probs=205.9
Q ss_pred EEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-EcCCeEE
Q 000602 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVK 100 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~ 100 (1398)
-.+|| |+ |+|+|+..+-.+.|=|.++-++++.|...+ .|.-|.|. .|. ...|.+ +.++.|.
T Consensus 13 ~c~fS--p~----g~yiAs~~~yrlviRd~~tlq~~qlf~cld--ki~yieW~-------ads---~~ilC~~yk~~~vq 74 (447)
T KOG4497|consen 13 FCSFS--PC----GNYIASLSRYRLVIRDSETLQLHQLFLCLD--KIVYIEWK-------ADS---CHILCVAYKDPKVQ 74 (447)
T ss_pred ceeEC--CC----CCeeeeeeeeEEEEeccchhhHHHHHHHHH--Hhhheeee-------ccc---eeeeeeeeccceEE
Confidence 35799 99 999999998899999998877766555433 58888888 554 133333 4488999
Q ss_pred EEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcE-EEEEECCCeEEEEEcCCCeEEEEEccCCcc
Q 000602 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERC 179 (1398)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~-Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~ 179 (1398)
+|++.. .+-...+..-.+.+.+++|+| ||+. |.+..-|-.|.+|.+.+.+.... +.+..+
T Consensus 75 vwsl~Q---------------pew~ckIdeg~agls~~~WSP---dgrhiL~tseF~lriTVWSL~t~~~~~~-~~pK~~ 135 (447)
T KOG4497|consen 75 VWSLVQ---------------PEWYCKIDEGQAGLSSISWSP---DGRHILLTSEFDLRITVWSLNTQKGYLL-PHPKTN 135 (447)
T ss_pred EEEeec---------------ceeEEEeccCCCcceeeeECC---CcceEeeeecceeEEEEEEeccceeEEe-cccccC
Confidence 999985 234456666778899999999 9965 55556689999999987665432 222221
Q ss_pred eEEEEEeecCCCCCcEEEEEECCCeEEEEEcc---cCCccccCCCCCCCCCCCC-CCCcceeeecccccceeEEEEEeCc
Q 000602 180 LLYSMKLWGDNLEALRIASGTIYNEIIVWKVD---WEHVAPLLNSPEGNHAHGS-SSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 180 ~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~---~~~~~~~~~~~~~~s~~~~-~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
+-.++| .+|+++.+..+.....-...+. .-.+...-........... ..++.-+.+|+..-..+.. .+ .-
T Consensus 136 -~kg~~f---~~dg~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laVwd~~Leykv~-aY-e~ 209 (447)
T KOG4497|consen 136 -VKGYAF---HPDGQFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAVWDNVLEYKVY-AY-ER 209 (447)
T ss_pred -ceeEEE---CCCCceeeeeecccHHHHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEEecchhhheee-ee-ee
Confidence 233444 6788887777654211111110 0000000000000000111 1134456677654333222 11 12
Q ss_pred cCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc--------------------------------------------
Q 000602 256 EGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK-------------------------------------------- 291 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~-------------------------------------------- 291 (1398)
.-.+..++|+|.+++|+.|+.|+.+|+-+.-+.+..
T Consensus 210 ~lG~k~v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~ 289 (447)
T KOG4497|consen 210 GLGLKFVEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIW 289 (447)
T ss_pred ccceeEEEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCcc
Confidence 246888999999999999999999998665544321
Q ss_pred -CCCC---c--eEeeeeEEe------cCCccEEEEEEc-CCEEEEEeCC---CcEEEEcCCCceEEEEecccCccEEEEE
Q 000602 292 -DSDS---I--EEVGSSVLY------GHNARVWDCCLT-DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGIWRCL 355 (1398)
Q Consensus 292 -~~~~---~--~~i~~~~~~------gh~~~V~~l~~s-~~~l~sgs~D---g~i~vWd~~g~~l~~l~~h~~~~V~sl~ 355 (1398)
.+.. + .+++...+. .....+--++|+ +.+.+..-.| ..+.+||+....+..+-.... +|....
T Consensus 290 ~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~avLiQk~-piraf~ 368 (447)
T KOG4497|consen 290 EESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLHAVLIQKH-PIRAFE 368 (447)
T ss_pred ccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhhhhhhhcc-ceeEEE
Confidence 0000 0 000000111 112245567887 3333333333 568999995555554444444 699999
Q ss_pred EcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEE
Q 000602 356 YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI 435 (1398)
Q Consensus 356 ~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv 435 (1398)
|+|....|+.+.....+.+|.+.+.. .+..|. ..-.|..+.|.-+|..++
T Consensus 369 WdP~~prL~vctg~srLY~W~psg~~--------------------~V~vP~----------~GF~i~~l~W~~~g~~i~ 418 (447)
T KOG4497|consen 369 WDPGRPRLVVCTGKSRLYFWAPSGPR--------------------VVGVPK----------KGFNIQKLQWLQPGEFIV 418 (447)
T ss_pred eCCCCceEEEEcCCceEEEEcCCCce--------------------EEecCC----------CCceeeeEEecCCCcEEE
Confidence 99998888887777789999986521 222221 113477888888887766
Q ss_pred EEcCCc
Q 000602 436 ATNHGY 441 (1398)
Q Consensus 436 ~t~~g~ 441 (1398)
..+.+.
T Consensus 419 l~~kDa 424 (447)
T KOG4497|consen 419 LCGKDA 424 (447)
T ss_pred EEcCCc
Confidence 654443
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.7e-09 Score=115.14 Aligned_cols=242 Identities=17% Similarity=0.217 Sum_probs=167.8
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEE-CCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYD-LEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd-~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
|...|++.-.- |- ..-+.+.+ |.+++||- ..+++.-..+...-..++..+.+. ++.+ .+++.
T Consensus 23 ~~d~vn~~~l~--~~----e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~-------~e~~---~L~vg 86 (404)
T KOG1409|consen 23 SQDDVNAAILI--PK----EEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYV-------SESR---RLYVG 86 (404)
T ss_pred chhhhhhheec--cC----CCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeee-------ccce---EEEEE
Confidence 34445554444 43 33444444 89999995 445665444543334578888888 6641 33344
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l 173 (1398)
...+++.-+.+...- . +....+....|...|..+-|+- .-..+++.+.|..+.---.+.+..+...
T Consensus 87 ~~ngtvtefs~sedf------n-----km~~~r~~~~h~~~v~~~if~~---~~e~V~s~~~dk~~~~hc~e~~~~lg~Y 152 (404)
T KOG1409|consen 87 QDNGTVTEFALSEDF------N-----KMTFLKDYLAHQARVSAIVFSL---THEWVLSTGKDKQFAWHCTESGNRLGGY 152 (404)
T ss_pred EecceEEEEEhhhhh------h-----hcchhhhhhhhhcceeeEEecC---CceeEEEeccccceEEEeeccCCcccce
Confidence 447899888876421 0 2445666778999999999987 7788999988877665555555443222
Q ss_pred --ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 174 --HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 174 --~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
.....+..+.+ .+...|...|.|.+-.+. +..-.++.+
T Consensus 153 ~~~~~~t~~~~d~---------~~~fvGd~~gqvt~lr~~-------------------------------~~~~~~i~~ 192 (404)
T KOG1409|consen 153 NFETPASALQFDA---------LYAFVGDHSGQITMLKLE-------------------------------QNGCQLITT 192 (404)
T ss_pred EeeccCCCCceee---------EEEEecccccceEEEEEe-------------------------------ecCCceEEE
Confidence 22222221111 145566667777777665 114567889
Q ss_pred EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCc
Q 000602 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT 329 (1398)
Q Consensus 252 l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~ 329 (1398)
+.+|.+.+.+++|.|..+.|.||..|..+.+||+...+. .. ..+++|...|..+.+. -..++++++||.
T Consensus 193 ~~~h~~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~~g-----~~----~el~gh~~kV~~l~~~~~t~~l~S~~edg~ 263 (404)
T KOG1409|consen 193 FNGHTGEVTCLKWDPGQRLLFSGASDHSVIMWDIGGRKG-----TA----YELQGHNDKVQALSYAQHTRQLISCGEDGG 263 (404)
T ss_pred EcCcccceEEEEEcCCCcEEEeccccCceEEEeccCCcc-----ee----eeeccchhhhhhhhhhhhheeeeeccCCCe
Confidence 999999999999999999999999999999999987654 22 4788999999888876 489999999999
Q ss_pred EEEEcCC
Q 000602 330 CRVWGSD 336 (1398)
Q Consensus 330 i~vWd~~ 336 (1398)
|.+|+.+
T Consensus 264 i~~w~mn 270 (404)
T KOG1409|consen 264 IVVWNMN 270 (404)
T ss_pred EEEEecc
Confidence 9999983
|
|
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.7e-09 Score=118.29 Aligned_cols=208 Identities=20% Similarity=0.238 Sum_probs=145.7
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCe----EEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGT----LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~----~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
.++|-.++.. . +.++++-++|.+.+|..+.+- .+..+..+. .+..+.-+ |.. +.++|
T Consensus 105 ~~~I~gl~~~--d-----g~Litc~~sG~l~~~~~k~~d~hss~l~~la~g~--g~~~~r~~-------~~~---p~Iva 165 (412)
T KOG3881|consen 105 TKSIKGLKLA--D-----GTLITCVSSGNLQVRHDKSGDLHSSKLIKLATGP--GLYDVRQT-------DTD---PYIVA 165 (412)
T ss_pred cccccchhhc--C-----CEEEEEecCCcEEEEeccCCccccccceeeecCC--ceeeeccC-------CCC---CceEe
Confidence 4566666655 2 566666668999999998442 333444332 35555554 433 25666
Q ss_pred EEc-C--CeEEEEEecCCC-CCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC--CcEEEEEECCCeEEEEEcCC
Q 000602 93 LFG-E--KRVKLFELNFEL-SPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG--NRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 93 ~~g-d--~~V~vwdl~~~~-~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d--g~~Latgs~Dg~V~vWd~~~ 166 (1398)
++| . ..++|||++... .+..+..|.+.+.+ .-.-|++++.|.| . ...||++..-+.|++||...
T Consensus 166 ~GGke~~n~lkiwdle~~~qiw~aKNvpnD~L~L-------rVPvW~tdi~Fl~---g~~~~~fat~T~~hqvR~YDt~~ 235 (412)
T KOG3881|consen 166 TGGKENINELKIWDLEQSKQIWSAKNVPNDRLGL-------RVPVWITDIRFLE---GSPNYKFATITRYHQVRLYDTRH 235 (412)
T ss_pred cCchhcccceeeeecccceeeeeccCCCCccccc-------eeeeeeccceecC---CCCCceEEEEecceeEEEecCcc
Confidence 666 4 679999998521 11111122111111 1235788999998 5 67899999999999999986
Q ss_pred Ce-EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccc
Q 000602 167 SS-IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHT 245 (1398)
Q Consensus 167 ~~-~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~ 245 (1398)
++ ++.++...+. .+.++.. .|++..|++|..-+.+..+|.+ .
T Consensus 236 qRRPV~~fd~~E~-~is~~~l---~p~gn~Iy~gn~~g~l~~FD~r---------------------------------~ 278 (412)
T KOG3881|consen 236 QRRPVAQFDFLEN-PISSTGL---TPSGNFIYTGNTKGQLAKFDLR---------------------------------G 278 (412)
T ss_pred cCcceeEeccccC-cceeeee---cCCCcEEEEecccchhheeccc---------------------------------C
Confidence 54 4555554433 3444444 6889999999999999999998 4
Q ss_pred eeEEEE-EeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 246 AVNLFR-LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 246 ~~~~~~-l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
+..... +.|-.+.|.+|..+|.+++|++|+-|+.|||+|+.+.+.
T Consensus 279 ~kl~g~~~kg~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkl 324 (412)
T KOG3881|consen 279 GKLLGCGLKGITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKL 324 (412)
T ss_pred ceeeccccCCccCCcceEEEcCCCceEEeeccceeEEEeecccchh
Confidence 444444 788999999999999999999999999999999998654
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.10 E-value=7e-08 Score=114.64 Aligned_cols=391 Identities=12% Similarity=0.057 Sum_probs=214.0
Q ss_pred eccceEEEEEEecCC-----CCC---CCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCcc
Q 000602 16 YLGEISALCFVHLPS-----HLS---SLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 16 h~~~Vtalafs~~pd-----~~~---~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
|...|+.|.|. |. .++ ..-+||++. .|.|.|||...+..+..++.+.. +|..++|-+. .++.+
T Consensus 54 h~s~V~~VrWa--p~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~~~~l~~~~~-~~qdl~W~~~----rd~Sr- 125 (1062)
T KOG1912|consen 54 HQSAVTSVRWA--PAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASVINWLSHSND-SVQDLCWVPA----RDDSR- 125 (1062)
T ss_pred CccceeEEEec--cCCCchhccCccccceeEEeccccCcEEEEEehhhhhhhhhcCCCc-chhheeeeec----cCcch-
Confidence 78889999998 64 112 223444454 59999999999988888885544 8999998733 14432
Q ss_pred ceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC
Q 000602 87 VTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 87 ~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
+.++|..+..++.+|+..++. .......-.....|+.+.|+ |.+.+..-+..|.|.+-+.-.
T Consensus 126 -d~LlaIh~ss~lvLwntdtG~---------------k~Wk~~ys~~iLs~f~~DPf--d~rh~~~l~s~g~vl~~~~l~ 187 (1062)
T KOG1912|consen 126 -DVLLAIHGSSTLVLWNTDTGE---------------KFWKYDYSHEILSCFRVDPF--DSRHFCVLGSKGFVLSCKDLG 187 (1062)
T ss_pred -heeEEecCCcEEEEEEccCCc---------------eeeccccCCcceeeeeeCCC--CcceEEEEccCceEEEEeccC
Confidence 367778889999999988733 33333333345566888886 455555555667776665521
Q ss_pred -------CeEEEEEccCCc-----------------------ceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCcc
Q 000602 167 -------SSIILEVHSPER-----------------------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1398)
Q Consensus 167 -------~~~~~~l~~~~~-----------------------~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~ 216 (1398)
++.. .+..+.. -+.|++.| .++|.-.-++-...-..+.++|++
T Consensus 188 ~sep~~pgk~~-qI~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~f-af~p~~rn~lfi~~prellv~dle----- 260 (1062)
T KOG1912|consen 188 LSEPDVPGKEF-QITSDHSDLAHLERETATGNSTTSTPASAYFITYCAQF-AFSPHWRNILFITFPRELLVFDLE----- 260 (1062)
T ss_pred CCCCCCCceeE-EEecCccchhhhhhhhhccccccCCCcchhHHHHHHhh-hcChhhhceEEEEeccceEEEcch-----
Confidence 1111 1111100 01122111 123434444445566778888887
Q ss_pred ccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC--EEEEEECCCeEEEEEcCCCcccCCC
Q 000602 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSD 294 (1398)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~--~LaS~s~Dg~V~iWd~~~~~~~~~~ 294 (1398)
-..++.+..-..+.+.-+.+.|+++ .|...-.||.+.+|--+........
T Consensus 261 ----------------------------~~~~l~vvpier~~akfv~vlP~~~rd~LfclH~nG~ltirvrk~~~~~f~~ 312 (1062)
T KOG1912|consen 261 ----------------------------YECCLAVVPIERGGAKFVDVLPDPRRDALFCLHSNGRLTIRVRKEEPTEFKK 312 (1062)
T ss_pred ----------------------------hhceeEEEEeccCCcceeEeccCCCcceEEEEecCCeEEEEEeeccCccccc
Confidence 3344444444455566677777664 6888899999999976653221000
Q ss_pred Cce--------EeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC-CCceE----------------------
Q 000602 295 SIE--------EVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQL---------------------- 340 (1398)
Q Consensus 295 ~~~--------~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~-~g~~l---------------------- 340 (1398)
... +.. ....-.+.++...... ++.++.--.+|...+|.+ +|+.-
T Consensus 313 ~~~~l~~dl~~Q~~-~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~~~~~s~~iel~~pf~f~~~~~~ 391 (1062)
T KOG1912|consen 313 PNASLSMDLGEQVH-VVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIHLDYRSSSIELVLPFDFNLSTKL 391 (1062)
T ss_pred cchhhccccccceE-EEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcCcccccccccccccccccCceee
Confidence 000 000 0000001111111111 223333334566667776 33210
Q ss_pred ---------EEEecccCccEEEEEEc-----------CCC-------CEEEEEEcCCcEEEEEcCCCC-cccccCCCccc
Q 000602 341 ---------KMIKEHIGRGIWRCLYD-----------SLS-------SLLVTAGFDSAIKVHQFQAFL-PGSLESHPEAK 392 (1398)
Q Consensus 341 ---------~~l~~h~~~~V~sl~~s-----------pdg-------~~latgg~Dg~I~iwdl~~~~-l~~l~~~~~~v 392 (1398)
....+|.. +..+.... |.+ .++|.|...|+|.++|+.... .+.+.
T Consensus 392 v~k~~l~~LS~dg~h~s-Gs~~~~~~p~p~~t~~~~~p~~n~~~~~~pLvAvGT~sGTV~vvdvst~~v~~~fs------ 464 (1062)
T KOG1912|consen 392 VGKTSLISLSDDGSHSS-GSTCVRMRPMPELTKVENDPGGNTPAGTVPLVAVGTNSGTVDVVDVSTNAVAASFS------ 464 (1062)
T ss_pred hhhccccchhhcCCCCC-CceeeecccCcccceeecCCCCCccceeeeeEEeecCCceEEEEEecchhhhhhhc------
Confidence 00012222 23333222 222 256778888999999984322 12221
Q ss_pred cccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEE-------cCCcEEEEEeecCCCceeE--EEEeecC
Q 000602 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIAT-------NHGYLYHTKLCDMDSVNWN--KILQVSE 463 (1398)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t-------~~g~i~~~~l~~~~~~~w~--~i~~~~~ 463 (1398)
.|...|+++.|.....++..+ ..|......+.+..++.-. +..++.+
T Consensus 465 ------------------------vht~~VkgleW~g~sslvSfsys~~n~~sg~vrN~l~vtdLrtGlsk~fR~l~~~d 520 (1062)
T KOG1912|consen 465 ------------------------VHTSLVKGLEWLGNSSLVSFSYSHVNSASGGVRNDLVVTDLRTGLSKRFRGLQKPD 520 (1062)
T ss_pred ------------------------ccccceeeeeeccceeEEEeeeccccccccceeeeEEEEEcccccccccccCCCCC
Confidence 244567777777665555432 1223333333333333311 2235566
Q ss_pred CccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccc
Q 000602 464 GMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHT 507 (1398)
Q Consensus 464 ~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~ 507 (1398)
..+|..+.+. ..++++++.-.+.-+.+|++.+-.+.
T Consensus 521 espI~~irvS--------~~~~yLai~Fr~~plEiwd~kt~~~l 556 (1062)
T KOG1912|consen 521 ESPIRAIRVS--------SSGRYLAILFRREPLEIWDLKTLRML 556 (1062)
T ss_pred cCcceeeeec--------ccCceEEEEecccchHHHhhccchHH
Confidence 7788887763 34789999999999999999765544
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.07 E-value=4.4e-07 Score=107.80 Aligned_cols=271 Identities=9% Similarity=0.015 Sum_probs=163.1
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEEE-EEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCC
Q 000602 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHG-ISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1398)
Q Consensus 35 g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~~-i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~ 111 (1398)
+.+++... ++.|.|.|.++.+.+.++.... .+|. +.|+ |||+ .++++..|+.|.++|+.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~~~~i~~~~--~~h~~~~~s-------~Dgr---~~yv~~rdg~vsviD~~~----- 67 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKVVARIPTGG--APHAGLKFS-------PDGR---YLYVANRDGTVSVIDLAT----- 67 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SEEEEEE-ST--TEEEEEE-T-------T-SS---EEEEEETTSEEEEEETTS-----
T ss_pred ccEEEEEecCCCEEEEEECCCCeEEEEEcCCC--CceeEEEec-------CCCC---EEEEEcCCCeEEEEECCc-----
Confidence 34665544 5999999999999999998643 3454 6788 9984 555556699999999986
Q ss_pred CCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-CCCeEEEEEcCCCeEEEEEccCC------cceEEEE
Q 000602 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIILEVHSPE------RCLLYSM 184 (1398)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vWd~~~~~~~~~l~~~~------~~~~~s~ 184 (1398)
.+.+++++.- ....++++++ ||++++++. .++.+.++|.++.+.++.+.... ..-+..+
T Consensus 68 ----------~~~v~~i~~G-~~~~~i~~s~---DG~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~~~~~~~~Rv~aI 133 (369)
T PF02239_consen 68 ----------GKVVATIKVG-GNPRGIAVSP---DGKYVYVANYEPGTVSVIDAETLEPVKTIPTGGMPVDGPESRVAAI 133 (369)
T ss_dssp ----------SSEEEEEE-S-SEEEEEEE-----TTTEEEEEEEETTEEEEEETTT--EEEEEE--EE-TTTS---EEEE
T ss_pred ----------ccEEEEEecC-CCcceEEEcC---CCCEEEEEecCCCceeEeccccccceeecccccccccccCCCceeE
Confidence 4566666543 4568899999 999988764 68999999999999988875321 1112222
Q ss_pred EeecCCCCCc-EEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEE
Q 000602 185 KLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE 263 (1398)
Q Consensus 185 ~~~~~s~d~~-~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~va 263 (1398)
.. ++... ++++--.-++|.+-|... ...................
T Consensus 134 v~---s~~~~~fVv~lkd~~~I~vVdy~d--------------------------------~~~~~~~~i~~g~~~~D~~ 178 (369)
T PF02239_consen 134 VA---SPGRPEFVVNLKDTGEIWVVDYSD--------------------------------PKNLKVTTIKVGRFPHDGG 178 (369)
T ss_dssp EE----SSSSEEEEEETTTTEEEEEETTT--------------------------------SSCEEEEEEE--TTEEEEE
T ss_pred Ee---cCCCCEEEEEEccCCeEEEEEecc--------------------------------ccccceeeecccccccccc
Confidence 21 34455 444445558888888761 1112222333456677899
Q ss_pred EcCCCCEEEEE-ECCCeEEEEEcCCCcccCCCCceEeee--------eEEecCC--ccEEEEEEcCCEEEEEeCCCcEEE
Q 000602 264 WSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGS--------SVLYGHN--ARVWDCCLTDSFIITAGEDCTCRV 332 (1398)
Q Consensus 264 fspdg~~LaS~-s~Dg~V~iWd~~~~~~~~~~~~~~i~~--------~~~~gh~--~~V~~l~~s~~~l~sgs~Dg~i~v 332 (1398)
|+|++++++.+ ..+..|-++|..+++.. ..+.. ..-..|. +++|...-.+...++.-....+.+
T Consensus 179 ~dpdgry~~va~~~sn~i~viD~~~~k~v-----~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v 253 (369)
T PF02239_consen 179 FDPDGRYFLVAANGSNKIAVIDTKTGKLV-----ALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSV 253 (369)
T ss_dssp E-TTSSEEEEEEGGGTEEEEEETTTTEEE-----EEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-
T ss_pred cCcccceeeecccccceeEEEeeccceEE-----EEeeccccccccccccccCCCcceEEeeccccceecccccCCcccc
Confidence 99999987664 55678999998887652 21110 0112232 235544433444434434446678
Q ss_pred EcC-CCceEEEEecccCccEEEEEEcCCCCEEEEE----EcCCcEEEEEcC
Q 000602 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA----GFDSAIKVHQFQ 378 (1398)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latg----g~Dg~I~iwdl~ 378 (1398)
|+. +.+.++++....+ + .-+..+|+++++... ...++|.++|.+
T Consensus 254 ~d~~~wkvv~~I~~~G~-g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~ 302 (369)
T PF02239_consen 254 HDDYAWKVVKTIPTQGG-G-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKK 302 (369)
T ss_dssp STTTBTSEEEEEE-SSS-S---EE--TT-SEEEEE-TT-SSHT-EEEEECC
T ss_pred chhhcCeEEEEEECCCC-c-ceeecCCCCccEEeeccCCCCCceEEEEECc
Confidence 888 7889999988766 5 677889999999887 445899999985
|
... |
| >KOG3881 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.07 E-value=9.5e-09 Score=114.01 Aligned_cols=268 Identities=14% Similarity=0.149 Sum_probs=184.5
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEE----E-eeeCccEEEEEEeccccccCCCCccceeEE
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF----Q-VFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~----~-~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
..|++++|. -| +....+.... +..+..+..+...+.... . .....+|.+++.. +| .++
T Consensus 56 ~ris~l~~~--~d--~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~--------dg----~Li 119 (412)
T KOG3881|consen 56 DRISSLLFG--VD--GETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLA--------DG----TLI 119 (412)
T ss_pred hhhhhheee--cC--CceeEeeccccCcccccccccCCccccccccccccccccccccchhhc--------CC----EEE
Confidence 347777777 44 2245555553 566777776665544432 1 1122367776654 44 688
Q ss_pred EEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECC--CeEEEEEcCCCeE
Q 000602 92 ALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD--NSIRVWDISNSSI 169 (1398)
Q Consensus 92 a~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~D--g~V~vWd~~~~~~ 169 (1398)
++-++|.+.+|....+....++ +. .+..+ ..+..+.-.| .+...+|+|+.. +.+.|||+++.+.
T Consensus 120 tc~~sG~l~~~~~k~~d~hss~--------l~---~la~g-~g~~~~r~~~--~~p~Iva~GGke~~n~lkiwdle~~~q 185 (412)
T KOG3881|consen 120 TCVSSGNLQVRHDKSGDLHSSK--------LI---KLATG-PGLYDVRQTD--TDPYIVATGGKENINELKIWDLEQSKQ 185 (412)
T ss_pred EEecCCcEEEEeccCCcccccc--------ce---eeecC-CceeeeccCC--CCCceEecCchhcccceeeeeccccee
Confidence 8888999999999864422111 22 22222 3455565555 234567789988 8999999998877
Q ss_pred EEEEccCCc--------ceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecc
Q 000602 170 ILEVHSPER--------CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 170 ~~~l~~~~~--------~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
+.+-+.... -....+.|...++ ...+|+++.-+++++||.+
T Consensus 186 iw~aKNvpnD~L~LrVPvW~tdi~Fl~g~~-~~~fat~T~~hqvR~YDt~------------------------------ 234 (412)
T KOG3881|consen 186 IWSAKNVPNDRLGLRVPVWITDIRFLEGSP-NYKFATITRYHQVRLYDTR------------------------------ 234 (412)
T ss_pred eeeccCCCCccccceeeeeeccceecCCCC-CceEEEEecceeEEEecCc------------------------------
Confidence 766553322 1234456654433 6789999999999999998
Q ss_pred cccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--C
Q 000602 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--S 319 (1398)
Q Consensus 242 ~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~ 319 (1398)
...+|+..+.--+.+|.++...|++++++++..-+.+..+|++.++. .. ..+.+-.+.|.++..+| .
T Consensus 235 --~qRRPV~~fd~~E~~is~~~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-----~g----~~~kg~tGsirsih~hp~~~ 303 (412)
T KOG3881|consen 235 --HQRRPVAQFDFLENPISSTGLTPSGNFIYTGNTKGQLAKFDLRGGKL-----LG----CGLKGITGSIRSIHCHPTHP 303 (412)
T ss_pred --ccCcceeEeccccCcceeeeecCCCcEEEEecccchhheecccCcee-----ec----cccCCccCCcceEEEcCCCc
Confidence 24567888887899999999999999999999999999999999765 22 24678888999999986 5
Q ss_pred EEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCC
Q 000602 320 FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1398)
Q Consensus 320 ~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spd 359 (1398)
+++++|-|..+||+|+ +.+.+.....-. .++++.+.++
T Consensus 304 ~las~GLDRyvRIhD~ktrkll~kvYvKs--~lt~il~~~~ 342 (412)
T KOG3881|consen 304 VLASCGLDRYVRIHDIKTRKLLHKVYVKS--RLTFILLRDD 342 (412)
T ss_pred eEEeeccceeEEEeecccchhhhhhhhhc--cccEEEecCC
Confidence 9999999999999999 545554432222 2566666543
|
|
| >KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.04 E-value=6.8e-10 Score=124.84 Aligned_cols=189 Identities=16% Similarity=0.220 Sum_probs=150.1
Q ss_pred EEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCc
Q 000602 136 FDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215 (1398)
Q Consensus 136 ~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~ 215 (1398)
..+.++. +|.+|+.|+.-|.|-.+|..++.....+...+. +..+.|.. +..++| ......++|||-.
T Consensus 133 Y~~~ytr---nGrhlllgGrKGHlAa~Dw~t~~L~~Ei~v~Et--v~Dv~~LH---neq~~A-VAQK~y~yvYD~~---- 199 (545)
T KOG1272|consen 133 YHLDYTR---NGRHLLLGGRKGHLAAFDWVTKKLHFEINVMET--VRDVTFLH---NEQFFA-VAQKKYVYVYDNN---- 199 (545)
T ss_pred eeeeecC---CccEEEecCCccceeeeecccceeeeeeehhhh--hhhhhhhc---chHHHH-hhhhceEEEecCC----
Confidence 5677887 999999999999999999999998887765443 45555532 233444 4456778888865
Q ss_pred cccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCC
Q 000602 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1398)
Q Consensus 216 ~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~ 295 (1398)
+..++.++.| ..|..+.|.|---+|++++..|.++--|+.+++.
T Consensus 200 ------------------------------GtElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~Gkl----- 243 (545)
T KOG1272|consen 200 ------------------------------GTELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKL----- 243 (545)
T ss_pred ------------------------------CcEEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhh-----
Confidence 5567777655 5689999999999999999999999999999877
Q ss_pred ceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcE
Q 000602 296 IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1398)
Q Consensus 296 ~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I 372 (1398)
+. .+..-.+++..++-+ ...+-+|...|+|.+|.. ..+++..+..|.+ +|.++++.++|.|+||.|.|..+
T Consensus 244 Va-----~~~t~~G~~~vm~qNP~NaVih~GhsnGtVSlWSP~skePLvKiLcH~g-~V~siAv~~~G~YMaTtG~Dr~~ 317 (545)
T KOG1272|consen 244 VA-----SIRTGAGRTDVMKQNPYNAVIHLGHSNGTVSLWSPNSKEPLVKILCHRG-PVSSIAVDRGGRYMATTGLDRKV 317 (545)
T ss_pred hH-----HHHccCCccchhhcCCccceEEEcCCCceEEecCCCCcchHHHHHhcCC-CcceEEECCCCcEEeecccccce
Confidence 32 333334455555555 367888999999999999 6778888889999 79999999999999999999999
Q ss_pred EEEEcCC
Q 000602 373 KVHQFQA 379 (1398)
Q Consensus 373 ~iwdl~~ 379 (1398)
+|||++.
T Consensus 318 kIWDlR~ 324 (545)
T KOG1272|consen 318 KIWDLRN 324 (545)
T ss_pred eEeeecc
Confidence 9999964
|
|
| >PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.1e-08 Score=113.63 Aligned_cols=294 Identities=14% Similarity=0.117 Sum_probs=170.1
Q ss_pred CCCcEEEEeCCcCee------ccce-EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEE
Q 000602 2 GKKDLSEWRLDVGQY------LGEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~h------~~~V-talafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~f 73 (1398)
+++.|.+.|..+.+. .+.+ ..++|+ || ++++.+.+ |+.|.++|+.+++.+++++.. ....++++
T Consensus 14 ~~~~v~viD~~t~~~~~~i~~~~~~h~~~~~s--~D----gr~~yv~~rdg~vsviD~~~~~~v~~i~~G--~~~~~i~~ 85 (369)
T PF02239_consen 14 GSGSVAVIDGATNKVVARIPTGGAPHAGLKFS--PD----GRYLYVANRDGTVSVIDLATGKVVATIKVG--GNPRGIAV 85 (369)
T ss_dssp GGTEEEEEETTT-SEEEEEE-STTEEEEEE-T--T-----SSEEEEEETTSEEEEEETTSSSEEEEEE-S--SEEEEEEE
T ss_pred CCCEEEEEECCCCeEEEEEcCCCCceeEEEec--CC----CCEEEEEcCCCeEEEEECCcccEEEEEecC--CCcceEEE
Confidence 468899999988762 2333 347799 99 88888877 899999999999999999863 35789999
Q ss_pred eccccccCCCCccceeEEEEE--cCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc-------CCCcEEEEEEEeec
Q 000602 74 NFINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVC 144 (1398)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~--gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~v~fsp~~ 144 (1398)
| +|| ++++++ ..+.+.++|.++ +++++.++. ....+..+..+|
T Consensus 86 s-------~DG----~~~~v~n~~~~~v~v~D~~t---------------le~v~~I~~~~~~~~~~~~Rv~aIv~s~-- 137 (369)
T PF02239_consen 86 S-------PDG----KYVYVANYEPGTVSVIDAET---------------LEPVKTIPTGGMPVDGPESRVAAIVASP-- 137 (369)
T ss_dssp ---------TT----TEEEEEEEETTEEEEEETTT-----------------EEEEEE--EE-TTTS---EEEEEE-S--
T ss_pred c-------CCC----CEEEEEecCCCceeEecccc---------------ccceeecccccccccccCCCceeEEecC--
Confidence 9 998 455544 389999999886 455554432 234678888888
Q ss_pred CCCcEEEEEEC-CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE-ECCCeEEEEEcccCCccccCCCC
Q 000602 145 NGNRSLAIGCS-DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 145 ~dg~~Latgs~-Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg-s~dg~I~vWd~~~~~~~~~~~~~ 222 (1398)
....++..-. .+.|.+-|..+...+..-.-......+...+ ++++.+++++ ..++.|-++|..+.
T Consensus 138 -~~~~fVv~lkd~~~I~vVdy~d~~~~~~~~i~~g~~~~D~~~---dpdgry~~va~~~sn~i~viD~~~~--------- 204 (369)
T PF02239_consen 138 -GRPEFVVNLKDTGEIWVVDYSDPKNLKVTTIKVGRFPHDGGF---DPDGRYFLVAANGSNKIAVIDTKTG--------- 204 (369)
T ss_dssp -SSSEEEEEETTTTEEEEEETTTSSCEEEEEEE--TTEEEEEE----TTSSEEEEEEGGGTEEEEEETTTT---------
T ss_pred -CCCEEEEEEccCCeEEEEEeccccccceeeeccccccccccc---CcccceeeecccccceeEEEeeccc---------
Confidence 7775555555 4788888877654332212122334555555 6788876654 56778999998732
Q ss_pred CCCCCCCCCCCcceeeecccccceeEEEEE----eCccCCEEEEE-------Ec--CCCCEEEEEECCCeEEEEEcCCCc
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRL----VGHEGSIFRIE-------WS--SCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l----~gH~~~I~~va-------fs--pdg~~LaS~s~Dg~V~iWd~~~~~ 289 (1398)
+.+..+ ..|..++..+- |. ..+...++.-....+.+||..+.+
T Consensus 205 ------------------------k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wk 260 (369)
T PF02239_consen 205 ------------------------KLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWK 260 (369)
T ss_dssp ------------------------EEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTS
T ss_pred ------------------------eEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCe
Confidence 222221 11333333321 11 122223222222345567766655
Q ss_pred ccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEE----eCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCE
Q 000602 290 WKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA----GEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSL 362 (1398)
Q Consensus 290 ~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sg----s~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~ 362 (1398)
. ++ .+...... .-+..+ .+++... ....+|.|+|. +.+.+.++....+..+..+.|+++|+.
T Consensus 261 v-----v~-----~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl~~~~~i~~~~~~~~~h~ef~~dG~~ 329 (369)
T PF02239_consen 261 V-----VK-----TIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTLKVVKTITPGPGKRVVHMEFNPDGKE 329 (369)
T ss_dssp E-----EE-----EEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGTEEEE-HHHHHT--EEEEEE-TTSSE
T ss_pred E-----EE-----EEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCcceeEEEeccCCCcEeccEECCCCCE
Confidence 4 33 33333344 445555 3667666 45589999999 666667776554445889999999996
Q ss_pred EEEEEc--CCcEEEEEcCC
Q 000602 363 LVTAGF--DSAIKVHQFQA 379 (1398)
Q Consensus 363 latgg~--Dg~I~iwdl~~ 379 (1398)
+..... ++.|.+||...
T Consensus 330 v~vS~~~~~~~i~v~D~~T 348 (369)
T PF02239_consen 330 VWVSVWDGNGAIVVYDAKT 348 (369)
T ss_dssp EEEEEE--TTEEEEEETTT
T ss_pred EEEEEecCCCEEEEEECCC
Confidence 655444 34699999853
|
... |
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1e-07 Score=110.63 Aligned_cols=306 Identities=13% Similarity=0.113 Sum_probs=185.3
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE--
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF-- 94 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~-- 94 (1398)
..+.+..++| ++ |+++|.+.+..+.|++..++..+.+... . ++..+.|+ |.| .+|.++
T Consensus 34 ~~~~~v~~~S--~~----G~lfA~~~~~~v~i~~~~~~~~~lt~~~--~-~~~~L~fS-------P~g----~yL~T~e~ 93 (566)
T KOG2315|consen 34 SRPCNVFAYS--NN----GRLFAYSDNQVVKVFEIATLKVVLCVEL--K-KTYDLLFS-------PKG----NYLLTWEP 93 (566)
T ss_pred CCcceeEEEc--CC----CcEEEEEcCCeEEEEEccCCcEEEEecc--c-eeeeeeec-------ccc----cccccccc
Confidence 4456778888 87 9999999999999999998864444432 2 68999999 776 454443
Q ss_pred ----cC-----CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 95 ----GE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 95 ----gd-----~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
++ ..+.+|++++.- .......+-.++ |+..|++ |..+ +.--..+.+.+|++.
T Consensus 94 ~~i~~~~~~~~pn~~v~~vet~~-------------~~s~~q~k~Q~~--W~~qfs~---dEsl-~arlv~nev~f~~~~ 154 (566)
T KOG2315|consen 94 WAIYGPKNASNPNVLVYNVETGV-------------QRSQIQKKMQNG--WVPQFSI---DESL-AARLVSNEVQFYDLG 154 (566)
T ss_pred cccccCCCCCCCceeeeeeccce-------------ehhheehhhhcC--ccccccc---chhh-hhhhhcceEEEEecC
Confidence 33 346799998621 111111112233 5888887 5543 333345789999997
Q ss_pred CCeEE-EEEccCCcceEEEEEeecCCCCCcEEEE-----EECCCeEEEEEcccCCccccCCCCCCCCCCC----------
Q 000602 166 NSSII-LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG---------- 229 (1398)
Q Consensus 166 ~~~~~-~~l~~~~~~~~~s~~~~~~s~d~~~las-----gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~---------- 229 (1398)
+-+.+ ..+.. .+ +..+.+.+ .|....||+ ++.-..++||.+..+...........+..+.
T Consensus 155 ~f~~~~~kl~~-~~--i~~f~lSp-gp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt 230 (566)
T KOG2315|consen 155 SFKTIQHKLSV-SG--ITMLSLSP-GPEPPFVAVYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGT 230 (566)
T ss_pred Cccceeeeeec-cc--eeeEEecC-CCCCceEEEEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCc
Confidence 64332 22321 11 11222211 223334443 4556789999876322211110000000000
Q ss_pred ---------------CCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE--EECCCeEEEEEcCCCcccC
Q 000602 230 ---------------SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS--VSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 230 ---------------~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS--~s~Dg~V~iWd~~~~~~~~ 292 (1398)
++....++.+...+ .......+ .-+++|.++.|+|+++-++. |-.--.+.|+|++..-
T Consensus 231 ~LLvLastdVDktn~SYYGEq~Lyll~t~-g~s~~V~L-~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--- 305 (566)
T KOG2315|consen 231 ALLVLASTDVDKTNASYYGEQTLYLLATQ-GESVSVPL-LKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--- 305 (566)
T ss_pred eEEEEEEEeecCCCccccccceEEEEEec-CceEEEec-CCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE---
Confidence 01122233333332 11122122 24799999999999987655 4456788999987642
Q ss_pred CCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEE
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTA 366 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latg 366 (1398)
.+.--+++=.++-|+ +++|+.||.+ |.|-|||+ +.+++..+..... +-+.|+|||.+++|+
T Consensus 306 ----------v~df~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n~K~i~~~~a~~t---t~~eW~PdGe~flTA 372 (566)
T KOG2315|consen 306 ----------VFDFPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPNRKLIAKFKAANT---TVFEWSPDGEYFLTA 372 (566)
T ss_pred ----------eEeCCCCCccceEECCCCCEEEEeecCCCCCceEEEeccchhhccccccCCc---eEEEEcCCCcEEEEE
Confidence 222234455677777 6888888865 88999999 7777777766543 568899999999987
Q ss_pred Ec------CCcEEEEEcCCCCcc
Q 000602 367 GF------DSAIKVHQFQAFLPG 383 (1398)
Q Consensus 367 g~------Dg~I~iwdl~~~~l~ 383 (1398)
.. |+.++||+..|..+.
T Consensus 373 TTaPRlrvdNg~KiwhytG~~l~ 395 (566)
T KOG2315|consen 373 TTAPRLRVDNGIKIWHYTGSLLH 395 (566)
T ss_pred eccccEEecCCeEEEEecCceee
Confidence 74 899999999886553
|
|
| >KOG2394 consensus WD40 protein DMR-N9 [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.1e-09 Score=119.86 Aligned_cols=183 Identities=16% Similarity=0.157 Sum_probs=126.5
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEE---eeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCC-C
Q 000602 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQ---VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFEL-S 109 (1398)
Q Consensus 35 g~lLaag~-dg~I~Iwd~~tg~~l~~~~---~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~-~ 109 (1398)
+--|+.|- -|.|.++|....+....|. .....+|.+|.|. |.+. ..++++..++.+.+||.+... .
T Consensus 185 g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWv-------pg~~--~~Fl~a~~sGnlyly~~~~~~~~ 255 (636)
T KOG2394|consen 185 GLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWV-------PGSD--SLFLVAHASGNLYLYDKEIVCGA 255 (636)
T ss_pred CcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEE-------eCCC--ceEEEEEecCceEEeeccccccC
Confidence 44556666 4889999876532211111 1122479999999 4431 267777789999999875321 0
Q ss_pred CCCCCCC----cc-----c---ccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC
Q 000602 110 PNSQYQP----ET-----C---VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1398)
Q Consensus 110 ~~~~~~~----~~-----~---~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~ 177 (1398)
....|+. +. . ..-.++..+.--.+.|+..+|+| ||++||+.+.||.+||+|..+.+++..++..-
T Consensus 256 t~p~~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~---DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF 332 (636)
T KOG2394|consen 256 TAPSYQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSP---DGKYLATVSQDGFLRIFDFDTQELLGVMKSYF 332 (636)
T ss_pred CCCcccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcC---CCceEEEEecCceEEEeeccHHHHHHHHHhhc
Confidence 0111111 00 0 00012222222345789999999 99999999999999999999887766655444
Q ss_pred cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccC
Q 000602 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1398)
Q Consensus 178 ~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~ 257 (1398)
+. +.+++| +||+++|++|+.|--|.||.+. ..+.+.+-.||..
T Consensus 333 GG-LLCvcW---SPDGKyIvtGGEDDLVtVwSf~---------------------------------erRVVARGqGHkS 375 (636)
T KOG2394|consen 333 GG-LLCVCW---SPDGKYIVTGGEDDLVTVWSFE---------------------------------ERRVVARGQGHKS 375 (636)
T ss_pred cc-eEEEEE---cCCccEEEecCCcceEEEEEec---------------------------------cceEEEecccccc
Confidence 43 456676 8999999999999999999998 6778888899999
Q ss_pred CEEEEEEcC
Q 000602 258 SIFRIEWSS 266 (1398)
Q Consensus 258 ~I~~vafsp 266 (1398)
+|..|+|.|
T Consensus 376 WVs~VaFDp 384 (636)
T KOG2394|consen 376 WVSVVAFDP 384 (636)
T ss_pred ceeeEeecc
Confidence 999999983
|
|
| >KOG1912 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.01 E-value=1.6e-07 Score=111.63 Aligned_cols=255 Identities=12% Similarity=0.122 Sum_probs=160.8
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEecccccc---CCCCccceeEEEEE
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTE---GSVSTRVTFEVALF 94 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~---~pdg~~~~~~la~~ 94 (1398)
..-.++.++ |. .++|-|+...|.|-|..+-+.+..+..|+. .|..|.|.|.+... .|.. ...+||++
T Consensus 16 sN~~A~Dw~--~~-----GLiAygshslV~VVDs~s~q~iqsie~h~s-~V~~VrWap~~~p~~llS~~~--~~lliAsa 85 (1062)
T KOG1912|consen 16 SNRNAADWS--PS-----GLIAYGSHSLVSVVDSRSLQLIQSIELHQS-AVTSVRWAPAPSPRDLLSPSS--SQLLIASA 85 (1062)
T ss_pred ccccccccC--cc-----ceEEEecCceEEEEehhhhhhhhccccCcc-ceeEEEeccCCCchhccCccc--cceeEEec
Confidence 335678888 75 799999999999999999999999998776 79999999774332 1121 11344444
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCC-cEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg-~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
. .|.|.+||... ...+..+..|.++|.+++|-|...+. ..|+.-....++.+|+..+|+...+
T Consensus 86 D~~GrIil~d~~~---------------~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk 150 (1062)
T KOG1912|consen 86 DISGRIILVDFVL---------------ASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK 150 (1062)
T ss_pred cccCcEEEEEehh---------------hhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec
Confidence 4 59999999986 23344567788999999999854344 4566666678999999999998877
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEccc-CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW-EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFR 251 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~-~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~ 251 (1398)
...... ++.++.+-+++ ...+..-+..|.+.+-+.-. .+... .++.++.
T Consensus 151 ~~ys~~-iLs~f~~DPfd--~rh~~~l~s~g~vl~~~~l~~sep~~---------------------------pgk~~qI 200 (1062)
T KOG1912|consen 151 YDYSHE-ILSCFRVDPFD--SRHFCVLGSKGFVLSCKDLGLSEPDV---------------------------PGKEFQI 200 (1062)
T ss_pred cccCCc-ceeeeeeCCCC--cceEEEEccCceEEEEeccCCCCCCC---------------------------CceeEEE
Confidence 654432 45555554443 33444445556666665431 00000 1111111
Q ss_pred EeCccC----------------C---------EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEec
Q 000602 252 LVGHEG----------------S---------IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1398)
Q Consensus 252 l~gH~~----------------~---------I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~g 306 (1398)
-..|++ . .-.++|+|.-+-++-....+.+.++|++-..+ +..+ .+..
T Consensus 201 ~sd~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~-----l~vv---pier 272 (1062)
T KOG1912|consen 201 TSDHSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC-----LAVV---PIER 272 (1062)
T ss_pred ecCccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce-----eEEE---Eecc
Confidence 111111 0 12256788666555556677899999986544 2211 2222
Q ss_pred CCccEEEEEEc--CCEEEEEeCCCcEEEEcC
Q 000602 307 HNARVWDCCLT--DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 307 h~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~ 335 (1398)
-...+.++--. ...|++...||.+.+|-.
T Consensus 273 ~~akfv~vlP~~~rd~LfclH~nG~ltirvr 303 (1062)
T KOG1912|consen 273 GGAKFVDVLPDPRRDALFCLHSNGRLTIRVR 303 (1062)
T ss_pred CCcceeEeccCCCcceEEEEecCCeEEEEEe
Confidence 22233333333 368999999999999975
|
|
| >KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.01 E-value=2.4e-08 Score=108.74 Aligned_cols=234 Identities=15% Similarity=0.145 Sum_probs=143.6
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe-----EEEEEccCCcc-----------eEEEEEeecCCCCCcE
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEALR 195 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-----~~~~l~~~~~~-----------~~~s~~~~~~s~d~~~ 195 (1398)
.+-|.+|.|.. .|.+||||..+|.|.++.-.... ....++.|+.. -+..++++. ..+...
T Consensus 25 adiis~vef~~---~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~-~~n~a~ 100 (433)
T KOG1354|consen 25 ADIISAVEFDH---YGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLD-DGNLAE 100 (433)
T ss_pred hcceeeEEeec---ccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecC-CCCccE
Confidence 46789999999 99999999999999999765422 12223222211 122334433 234556
Q ss_pred EEEEECCCeEEEEEcccCCccccCC-CCCCCCCCCCCCCcceeeec-----ccccceeEEEEE-eCccCCEEEEEEcCCC
Q 000602 196 IASGTIYNEIIVWKVDWEHVAPLLN-SPEGNHAHGSSSDFKCFKLQ-----DQQHTAVNLFRL-VGHEGSIFRIEWSSCG 268 (1398)
Q Consensus 196 lasgs~dg~I~vWd~~~~~~~~~~~-~~~~~s~~~~~~~~~~i~i~-----~~~~~~~~~~~l-~gH~~~I~~vafspdg 268 (1398)
++..+.|.+|++|.+.......... .+....+. .-..+++. +......+.+.+ .+|.-.|++|.++.|+
T Consensus 101 FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~----~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~ 176 (433)
T KOG1354|consen 101 FLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPG----TITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDK 176 (433)
T ss_pred EEEecCCcceeeeeeeccccccccccccccCCCC----ccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCcc
Confidence 7778899999999998543322111 00000000 00111111 111122233333 4788999999999999
Q ss_pred CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcCCCc-----eE
Q 000602 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGK-----QL 340 (1398)
Q Consensus 269 ~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~~g~-----~l 340 (1398)
..++|+ +|-.|.+|++.-... +..+-.++|.....-+.-|++..|+| +.++-.+..|+|++-|+... ..
T Consensus 177 Et~lSA-DdLRINLWnlei~d~--sFnIVDIKP~nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hs 253 (433)
T KOG1354|consen 177 ETFLSA-DDLRINLWNLEIIDQ--SFNIVDIKPANMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHS 253 (433)
T ss_pred ceEeec-cceeeeeccccccCC--ceeEEEccccCHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchh
Confidence 999987 566899999975433 11122233333333345688888985 78888899999999998321 11
Q ss_pred EEEec------------ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 341 KMIKE------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 341 ~~l~~------------h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.+.. --. .|..+.|+++|+++++-.. -+|++||++
T Consensus 254 KlfEepedp~~rsffseiIs-SISDvKFs~sGryilsRDy-ltvk~wD~n 301 (433)
T KOG1354|consen 254 KLFEEPEDPSSRSFFSEIIS-SISDVKFSHSGRYILSRDY-LTVKLWDLN 301 (433)
T ss_pred hhhccccCCcchhhHHHHhh-hhhceEEccCCcEEEEecc-ceeEEEecc
Confidence 11111 112 4788899999999986442 599999994
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.98 E-value=6.8e-08 Score=118.12 Aligned_cols=202 Identities=6% Similarity=0.080 Sum_probs=129.1
Q ss_pred cccCCCcEEEEEEEeecCCCcEEEEEE---CCCeEEEEEcCCCeEEE--EEccCCcceEEEEEeecCCCCCcEEEEE-EC
Q 000602 128 LPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSSIIL--EVHSPERCLLYSMKLWGDNLEALRIASG-TI 201 (1398)
Q Consensus 128 l~~h~~~V~~v~fsp~~~dg~~Latgs---~Dg~V~vWd~~~~~~~~--~l~~~~~~~~~s~~~~~~s~d~~~lasg-s~ 201 (1398)
+..+...+.+.+|+| ||+.|+..+ .+..|.+|++.+++... .+..+. ..+.| +||+..|+.. +.
T Consensus 194 lt~~~~~~~~p~wSP---DG~~la~~s~~~g~~~i~i~dl~~G~~~~l~~~~~~~----~~~~~---SPDG~~La~~~~~ 263 (429)
T PRK03629 194 VHRSPQPLMSPAWSP---DGSKLAYVTFESGRSALVIQTLANGAVRQVASFPRHN----GAPAF---SPDGSKLAFALSK 263 (429)
T ss_pred eecCCCceeeeEEcC---CCCEEEEEEecCCCcEEEEEECCCCCeEEccCCCCCc----CCeEE---CCCCCEEEEEEcC
Confidence 334667899999999 999888654 24579999998875432 222222 23444 7899888754 44
Q ss_pred CC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-C
Q 000602 202 YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R 278 (1398)
Q Consensus 202 dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D-g 278 (1398)
+| .|.+||+. ++. ...+..+...+....|+|||+.|+..+.+ +
T Consensus 264 ~g~~~I~~~d~~---------------------------------tg~-~~~lt~~~~~~~~~~wSPDG~~I~f~s~~~g 309 (429)
T PRK03629 264 TGSLNLYVMDLA---------------------------------SGQ-IRQVTDGRSNNTEPTWFPDSQNLAYTSDQAG 309 (429)
T ss_pred CCCcEEEEEECC---------------------------------CCC-EEEccCCCCCcCceEECCCCCEEEEEeCCCC
Confidence 54 58888887 222 23344445567889999999999877764 4
Q ss_pred eEEEE--EcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcCCCceEEEEecccCccE
Q 000602 279 SARIW--EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (1398)
Q Consensus 279 ~V~iW--d~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~~g~~l~~l~~h~~~~V 351 (1398)
...|| |+.++.. + .+..+........|+ +++|+..+.+ ..+.+||+.+.....+.... ..
T Consensus 310 ~~~Iy~~d~~~g~~------~-----~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~Lt~~~--~~ 376 (429)
T PRK03629 310 RPQVYKVNINGGAP------Q-----RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVLTDTF--LD 376 (429)
T ss_pred CceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEeCCCC--CC
Confidence 45555 5555432 1 233333345567777 4677665543 35888998443344454322 24
Q ss_pred EEEEEcCCCCEEEEEEcCCc---EEEEEcCCCCccccc
Q 000602 352 WRCLYDSLSSLLVTAGFDSA---IKVHQFQAFLPGSLE 386 (1398)
Q Consensus 352 ~sl~~spdg~~latgg~Dg~---I~iwdl~~~~l~~l~ 386 (1398)
....|+|||++|+..+.++. +.++++++...+.+.
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~ 414 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLP 414 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECc
Confidence 56789999999999888765 667777665554443
|
|
| >KOG2139 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=3e-07 Score=101.03 Aligned_cols=259 Identities=14% Similarity=0.182 Sum_probs=159.2
Q ss_pred cEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
.+..++|++ .-..+|++..|-+|++||-.. .....++......+.+++|-+.+ ...|+.|+. +.|.+|.....
T Consensus 100 dlr~~aWhq---H~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPls--aselavgCr-~gIciW~~s~t 172 (445)
T KOG2139|consen 100 DLRGVAWHQ---HIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLS--ASELAVGCR-AGICIWSDSRT 172 (445)
T ss_pred ceeeEeech---hhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCC--cceeeeeec-ceeEEEEcCcc
Confidence 467889988 555678899999999999876 55566666666678888886654 336666665 45999997721
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcccC
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s-~Dg~V~iWd~~~~~~~~ 292 (1398)
-... +.++. .......+..-.|| ..|++++|.+||..+++++ .|..|+|||..++..
T Consensus 173 ln~~-----------------r~~~~--~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~-- 230 (445)
T KOG2139|consen 173 LNAN-----------------RNIRM--MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQK-- 230 (445)
T ss_pred cccc-----------------ccccc--ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCc--
Confidence 1000 00000 00011123334566 7899999999999999987 467899999999876
Q ss_pred CCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 293 SDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
+. ....-.+.+.-+.|+ +.+|+.+.-|+..++|+. ..........-.+ .|....|+|+|++|+-.. .
T Consensus 231 ---~p-----L~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~lgsg-rvqtacWspcGsfLLf~~-s 300 (445)
T KOG2139|consen 231 ---IP-----LIPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWILGSG-RVQTACWSPCGSFLLFAC-S 300 (445)
T ss_pred ---cc-----ccccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceeccCC-ceeeeeecCCCCEEEEEE-c
Confidence 21 111233567788998 589999999999999976 2222222222334 499999999999765544 2
Q ss_pred CcEEEEEc--CCCCcccccCCCccccccCCccEEEeeeCCCccceeeccC---CCCcEEEEEEecCCeEEEEEcCCc
Q 000602 370 SAIKVHQF--QAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDS---KSEYVRCLHLTSEDTLYIATNHGY 441 (1398)
Q Consensus 370 g~I~iwdl--~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~V~~lafs~dg~llv~t~~g~ 441 (1398)
|.-++|.+ .++...-.. . ..+..+..+.....+....+ -.+.+.+++|.|.|.+++..-.|+
T Consensus 301 gsp~lysl~f~~~~~~~~~-~---------~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsGeyLav~fKg~ 367 (445)
T KOG2139|consen 301 GSPRLYSLTFDGEDSVFLR-P---------QSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSGEYLAVIFKGQ 367 (445)
T ss_pred CCceEEEEeecCCCccccC-c---------ccceeeeeeccchhhhhhcCcccccCccceeeECCCCCEEEEEEcCC
Confidence 34556666 222111100 0 00001100000000000001 135789999999999888875544
|
|
| >PRK03629 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.94 E-value=1.3e-07 Score=115.59 Aligned_cols=232 Identities=14% Similarity=0.066 Sum_probs=147.5
Q ss_pred cEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE----cCCeEEEEEecCCCCCCCCCCCcccc
Q 000602 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF----GEKRVKLFELNFELSPNSQYQPETCV 120 (1398)
Q Consensus 45 ~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~----gd~~V~vwdl~~~~~~~~~~~~~~~~ 120 (1398)
.|.+||...... ..+..+. ..+...+|+ ||| ..|+.. ++..+.+|++..+.
T Consensus 180 ~l~~~d~dg~~~-~~lt~~~-~~~~~p~wS-------PDG----~~la~~s~~~g~~~i~i~dl~~G~------------ 234 (429)
T PRK03629 180 ELRVSDYDGYNQ-FVVHRSP-QPLMSPAWS-------PDG----SKLAYVTFESGRSALVIQTLANGA------------ 234 (429)
T ss_pred eEEEEcCCCCCC-EEeecCC-CceeeeEEc-------CCC----CEEEEEEecCCCcEEEEEECCCCC------------
Confidence 799999875543 3333333 368999999 998 455442 24578999987532
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEE-ECCC--eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg-s~Dg--~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la 197 (1398)
.+.+..++++ +...+|+| ||+.|+.. +.++ .|.+||+.+++........ .......| +||+..|+
T Consensus 235 -~~~l~~~~~~---~~~~~~SP---DG~~La~~~~~~g~~~I~~~d~~tg~~~~lt~~~--~~~~~~~w---SPDG~~I~ 302 (429)
T PRK03629 235 -VRQVASFPRH---NGAPAFSP---DGSKLAFALSKTGSLNLYVMDLASGQIRQVTDGR--SNNTEPTW---FPDSQNLA 302 (429)
T ss_pred -eEEccCCCCC---cCCeEECC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEccCCC--CCcCceEE---CCCCCEEE
Confidence 2333344444 44689999 99988765 3344 5889999887654333222 12334555 78899887
Q ss_pred EEECC-CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC
Q 000602 198 SGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276 (1398)
Q Consensus 198 sgs~d-g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~ 276 (1398)
..+.+ +...+|.+.. . .+. ...+..+........|+|||++|+..+.
T Consensus 303 f~s~~~g~~~Iy~~d~------------------------------~-~g~-~~~lt~~~~~~~~~~~SpDG~~Ia~~~~ 350 (429)
T PRK03629 303 YTSDQAGRPQVYKVNI------------------------------N-GGA-PQRITWEGSQNQDADVSSDGKFMVMVSS 350 (429)
T ss_pred EEeCCCCCceEEEEEC------------------------------C-CCC-eEEeecCCCCccCEEECCCCCEEEEEEc
Confidence 76653 5555554430 0 111 2233334445667899999999987664
Q ss_pred C---CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCc---EEEEcCCCceEEEEecccC
Q 000602 277 D---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCT---CRVWGSDGKQLKMIKEHIG 348 (1398)
Q Consensus 277 D---g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~---i~vWd~~g~~l~~l~~h~~ 348 (1398)
+ ..|.+||+.++.. + .+.. ........|+ +..|+.++.++. +.+++++|+....+..|.+
T Consensus 351 ~~g~~~I~~~dl~~g~~------~-----~Lt~-~~~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~~~l~~~~~ 418 (429)
T PRK03629 351 NGGQQHIAKQDLATGGV------Q-----VLTD-TFLDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFKARLPATDG 418 (429)
T ss_pred cCCCceEEEEECCCCCe------E-----EeCC-CCCCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCeEECccCCC
Confidence 3 3588899887654 1 2221 1122345666 578888887764 6777888888888888877
Q ss_pred ccEEEEEEcC
Q 000602 349 RGIWRCLYDS 358 (1398)
Q Consensus 349 ~~V~sl~~sp 358 (1398)
.+...+|+|
T Consensus 419 -~~~~p~Wsp 427 (429)
T PRK03629 419 -QVKFPAWSP 427 (429)
T ss_pred -CcCCcccCC
Confidence 488888887
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.88 E-value=2.7e-07 Score=113.46 Aligned_cols=200 Identities=11% Similarity=0.051 Sum_probs=129.9
Q ss_pred eecccCCCcEEEEEEEeecCCCcEEEEEEC---CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE-EEEC
Q 000602 126 QSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTI 201 (1398)
Q Consensus 126 ~~l~~h~~~V~~v~fsp~~~dg~~Latgs~---Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~ 201 (1398)
+.+..|...+.+.+|+| ||+.|+..+. +..|.+||+.+++... +.... .......| +||+..|+ +.+.
T Consensus 195 ~~lt~~~~~v~~p~wSp---DG~~lay~s~~~g~~~i~~~dl~~g~~~~-l~~~~-g~~~~~~~---SPDG~~la~~~~~ 266 (435)
T PRK05137 195 RYLTDGSSLVLTPRFSP---NRQEITYMSYANGRPRVYLLDLETGQREL-VGNFP-GMTFAPRF---SPDGRKVVMSLSQ 266 (435)
T ss_pred EEEecCCCCeEeeEECC---CCCEEEEEEecCCCCEEEEEECCCCcEEE-eecCC-CcccCcEE---CCCCCEEEEEEec
Confidence 34556778999999999 9998887753 4689999998876532 22221 12334445 78898765 5566
Q ss_pred CCe--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CC
Q 000602 202 YNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR 278 (1398)
Q Consensus 202 dg~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg 278 (1398)
++. |.+||+. .+ ....+..+.+......|+|||++|+..+. ++
T Consensus 267 ~g~~~Iy~~d~~---------------------------------~~-~~~~Lt~~~~~~~~~~~spDG~~i~f~s~~~g 312 (435)
T PRK05137 267 GGNTDIYTMDLR---------------------------------SG-TTTRLTDSPAIDTSPSYSPDGSQIVFESDRSG 312 (435)
T ss_pred CCCceEEEEECC---------------------------------CC-ceEEccCCCCccCceeEcCCCCEEEEEECCCC
Confidence 655 6666765 22 23445556666778999999999887764 33
Q ss_pred --eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcCCCceEEEEecccCccE
Q 000602 279 --SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKEHIGRGI 351 (1398)
Q Consensus 279 --~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~~g~~l~~l~~h~~~~V 351 (1398)
.|.+||+.++.. + .+..+...+....|+ ++.|+....+ ..+.+||+++.....+.. .. .+
T Consensus 313 ~~~Iy~~d~~g~~~------~-----~lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~~~lt~-~~-~~ 379 (435)
T PRK05137 313 SPQLYVMNADGSNP------R-----RISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGERILTS-GF-LV 379 (435)
T ss_pred CCeEEEEECCCCCe------E-----EeecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCceEeccC-CC-CC
Confidence 577778766543 2 333334455667787 5677665543 357888885554444432 22 36
Q ss_pred EEEEEcCCCCEEEEEEcC------CcEEEEEcCCC
Q 000602 352 WRCLYDSLSSLLVTAGFD------SAIKVHQFQAF 380 (1398)
Q Consensus 352 ~sl~~spdg~~latgg~D------g~I~iwdl~~~ 380 (1398)
....|+|||+.|+..+.+ ..+.++++.+.
T Consensus 380 ~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~ 414 (435)
T PRK05137 380 EGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGR 414 (435)
T ss_pred CCCeECCCCCEEEEEEccCCCCCcceEEEEECCCC
Confidence 788999999988765543 24666677554
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-05 Score=97.73 Aligned_cols=291 Identities=11% Similarity=0.187 Sum_probs=174.4
Q ss_pred cceEEEEEEecCCCCCCCC-EEEEEeCCcEEEE----ECCCCe--EEEEEEeeeCccEEEEEEeccccccCCCCccceeE
Q 000602 18 GEISALCFVHLPSHLSSLP-FLLAGSGSQVLLY----DLEAGT--LIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFE 90 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~-lLaag~dg~I~Iw----d~~tg~--~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~ 90 (1398)
+.|.++.|. ++ .. ++++-.+|.|.++ |..+.. ++..+. ..|.+++|| ||. +.+
T Consensus 76 ~~ivs~~yl--~d----~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~vd----~GI~a~~WS-------PD~---Ell 135 (928)
T PF04762_consen 76 DKIVSFQYL--AD----SESLCIALASGDIILVREDPDPDEDEIEIVGSVD----SGILAASWS-------PDE---ELL 135 (928)
T ss_pred CcEEEEEec--cC----CCcEEEEECCceEEEEEccCCCCCceeEEEEEEc----CcEEEEEEC-------CCc---CEE
Confidence 457788877 87 44 4444448999999 555443 333332 369999999 997 356
Q ss_pred EEEEcCCeEEEEEecCCC----------------------CCCCCCCCccccccee--------------eeecccCCCc
Q 000602 91 VALFGEKRVKLFELNFEL----------------------SPNSQYQPETCVNLSL--------------VQSLPRLSHW 134 (1398)
Q Consensus 91 la~~gd~~V~vwdl~~~~----------------------~~~~~~~~~~~~~~~~--------------~~~l~~h~~~ 134 (1398)
+++.+++++.+-.-+.+. .++.+|.... +|. ...+. +.+.
T Consensus 136 a~vT~~~~l~~mt~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~---gK~aa~~~~~p~~~~~d~~~~s-~dd~ 211 (928)
T PF04762_consen 136 ALVTGEGNLLLMTRDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSA---GKAAARQLRDPTVPKVDEGKLS-WDDG 211 (928)
T ss_pred EEEeCCCEEEEEeccceEEEEeecCccccCCCceeeeccCcccCccCcch---hhhhhhhccCCCCCccccCccc-cCCC
Confidence 666778888776543211 1112221110 110 01122 3445
Q ss_pred EEEEEEEeecCCCcEEEEEEC------CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC---CCeE
Q 000602 135 VFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI---YNEI 205 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~------Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~---dg~I 205 (1398)
-..++|-. ||.++|+.+- -+.+|||+-+ |.....-+ +....-.+++| -|.|.+||+.-. ...|
T Consensus 212 ~~~ISWRG---DG~yFAVss~~~~~~~~R~iRVy~Re-G~L~stSE-~v~gLe~~l~W---rPsG~lIA~~q~~~~~~~V 283 (928)
T PF04762_consen 212 RVRISWRG---DGEYFAVSSVEPETGSRRVIRVYSRE-GELQSTSE-PVDGLEGALSW---RPSGNLIASSQRLPDRHDV 283 (928)
T ss_pred ceEEEECC---CCcEEEEEEEEcCCCceeEEEEECCC-ceEEeccc-cCCCccCCccC---CCCCCEEEEEEEcCCCcEE
Confidence 56788988 9999998764 2579999976 65443333 44444444555 678999998754 3455
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~ 285 (1398)
.+|.-..- ..+.....+......|..++|++|+..||..-.|. |.+|-.
T Consensus 284 vFfErNGL------------------------------rhgeF~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~ 332 (928)
T PF04762_consen 284 VFFERNGL------------------------------RHGEFTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTR 332 (928)
T ss_pred EEEecCCc------------------------------EeeeEecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEe
Confidence 55554400 01222222234567889999999999999987775 999998
Q ss_pred CCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC-----CCc--------eEEEEec----
Q 000602 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-----DGK--------QLKMIKE---- 345 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~-----~g~--------~l~~l~~---- 345 (1398)
.+..-- ++ ..........+..+.|+ +..|.....+|.+..++. .+. .+..+.|
T Consensus 333 ~NYHWY----LK---qei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~ll 405 (928)
T PF04762_consen 333 SNYHWY----LK---QEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLL 405 (928)
T ss_pred eCCEEE----EE---EEEEccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEE
Confidence 875420 11 01122233334447777 356666666566655443 110 1111111
Q ss_pred ------------------ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 346 ------------------HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 346 ------------------h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.-..+|..++|++++..+++-..||.+.+|...
T Consensus 406 lTpf~~a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~ 456 (928)
T PF04762_consen 406 LTPFRRAVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWD 456 (928)
T ss_pred EecccccCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEec
Confidence 112269999999999889999999999999974
|
|
| >PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [] | Back alignment and domain information |
|---|
Probab=98.87 E-value=0.0011 Score=87.81 Aligned_cols=363 Identities=13% Similarity=0.092 Sum_probs=199.7
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCeEEEE----EcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEE
Q 000602 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVW----DISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEII 206 (1398)
Q Consensus 131 h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vW----d~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~ 206 (1398)
..+.|.++.|.+ +...|+.+..+|.|.+. +..+... .+.+...+.+.+++| +||+.+|+..+.++++.
T Consensus 74 ~~~~ivs~~yl~---d~~~l~~~~~~Gdi~~~~~~~~~~~~~~--E~VG~vd~GI~a~~W---SPD~Ella~vT~~~~l~ 145 (928)
T PF04762_consen 74 PNDKIVSFQYLA---DSESLCIALASGDIILVREDPDPDEDEI--EIVGSVDSGILAASW---SPDEELLALVTGEGNLL 145 (928)
T ss_pred CCCcEEEEEecc---CCCcEEEEECCceEEEEEccCCCCCcee--EEEEEEcCcEEEEEE---CCCcCEEEEEeCCCEEE
Confidence 457899999999 88888899999999999 4443322 222223344667777 89999999999999999
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcC
Q 000602 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR 286 (1398)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~ 286 (1398)
+-+-. ..++....-+... ......++.+....=.-+.-.
T Consensus 146 ~mt~~----------------------------------fd~i~E~~l~~~~-------~~~~~~VsVGWGkKeTQF~Gs 184 (928)
T PF04762_consen 146 LMTRD----------------------------------FDPISEVPLDSDD-------FGESKHVSVGWGKKETQFHGS 184 (928)
T ss_pred EEecc----------------------------------ceEEEEeecCccc-------cCCCceeeeccCcccCccCcc
Confidence 88755 1222221111100 001122333322111111111
Q ss_pred CCcccC---CCC-ceEeeeeEEecCCccEEEEEEc--CCEEEEEeC---C---CcEEEEcCCCceEEEEecccCccEEEE
Q 000602 287 AEYWKD---SDS-IEEVGSSVLYGHNARVWDCCLT--DSFIITAGE---D---CTCRVWGSDGKQLKMIKEHIGRGIWRC 354 (1398)
Q Consensus 287 ~~~~~~---~~~-~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~---D---g~i~vWd~~g~~l~~l~~h~~~~V~sl 354 (1398)
.++... .++ ...+....+. +...-..++|. |.++++.+. . ..+|||+-+|....+-..-.+ --.++
T Consensus 185 ~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~ReG~L~stSE~v~g-Le~~l 262 (928)
T PF04762_consen 185 AGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSREGELQSTSEPVDG-LEGAL 262 (928)
T ss_pred hhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECCCceEEeccccCCC-ccCCc
Confidence 111000 000 0000001222 44455678886 578877764 2 579999998876555443333 23468
Q ss_pred EEcCCCCEEEEEEc---CCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCC
Q 000602 355 LYDSLSSLLVTAGF---DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431 (1398)
Q Consensus 355 ~~spdg~~latgg~---Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg 431 (1398)
+|-|.|++||+.-. .-.|.+|.-+|..... |.+.. +.....|..++|++|+
T Consensus 263 ~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge----------------F~l~~----------~~~~~~v~~l~Wn~ds 316 (928)
T PF04762_consen 263 SWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE----------------FTLRF----------DPEEEKVIELAWNSDS 316 (928)
T ss_pred cCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee----------------EecCC----------CCCCceeeEEEECCCC
Confidence 99999999998775 3456666655532111 12211 1234568999999999
Q ss_pred eEEEEEcCCcEEEEEeecCCCceeEEEEeec--CCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccc
Q 000602 432 TLYIATNHGYLYHTKLCDMDSVNWNKILQVS--EGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQ 509 (1398)
Q Consensus 432 ~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~--~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~ 509 (1398)
.+|+..-.+.+. +|..++..|-...... ....+..+.+. +.+...+.+.+.+|.+..+++.-.-
T Consensus 317 ~iLAv~~~~~vq---LWt~~NYHWYLKqei~~~~~~~~~~~~Wd-------pe~p~~L~v~t~~g~~~~~~~~~~v---- 382 (928)
T PF04762_consen 317 EILAVWLEDRVQ---LWTRSNYHWYLKQEIRFSSSESVNFVKWD-------PEKPLRLHVLTSNGQYEIYDFAWDV---- 382 (928)
T ss_pred CEEEEEecCCce---EEEeeCCEEEEEEEEEccCCCCCCceEEC-------CCCCCEEEEEecCCcEEEEEEEEEE----
Confidence 998887666655 6666677773332222 22222222222 2345677888877888777653210
Q ss_pred eeeeeeeecCcccceeEEEEEecC-CCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEe
Q 000602 510 LSFTFTWSAGIERQLLGTYWCKSL-GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDA 588 (1398)
Q Consensus 510 ~~~~~~~~~~~~~~~l~~~~~~s~-d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~ 588 (1398)
..... .++ |...++.-. ...+++=.+....-+++ ...+.......|.+++|
T Consensus 383 -----~~s~~-----------~~~~D~g~vaVID-G~~lllTpf~~a~VPPP-----------Ms~~~l~~~~~v~~vaf 434 (928)
T PF04762_consen 383 -----SRSPG-----------SSPNDNGTVAVID-GNKLLLTPFRRAVVPPP-----------MSSYELELPSPVNDVAF 434 (928)
T ss_pred -----EecCC-----------CCccCceEEEEEe-CCeEEEecccccCCCch-----------HhceEEcCCCCcEEEEE
Confidence 00000 001 111222221 12344433332211000 01122345677999999
Q ss_pred ecCCCEEEEecCCCeEEEEECCCc
Q 000602 589 SFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 589 Spdg~lLatGs~dGtI~Iwd~~~~ 612 (1398)
++++..+|+-..||+|.+|.+...
T Consensus 435 ~~~~~~~avl~~d~~l~~~~~~~~ 458 (928)
T PF04762_consen 435 SPSNSRFAVLTSDGSLSIYEWDLK 458 (928)
T ss_pred eCCCCeEEEEECCCCEEEEEecCC
Confidence 999988999999999999986653
|
|
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.86 E-value=1.8e-07 Score=114.91 Aligned_cols=200 Identities=14% Similarity=0.049 Sum_probs=125.8
Q ss_pred ecccCCCcEEEEEEEeecCCCcEEEEEEC---CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE-EEECC
Q 000602 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1398)
Q Consensus 127 ~l~~h~~~V~~v~fsp~~~dg~~Latgs~---Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~d 202 (1398)
.+..+...+.+.+|+| ||+.|+..+. +..|.+||+.+++........ .......| +|++..|+ +.+.+
T Consensus 198 ~lt~~~~~v~~p~wSp---Dg~~la~~s~~~~~~~l~~~dl~~g~~~~l~~~~--g~~~~~~~---SpDG~~l~~~~s~~ 269 (433)
T PRK04922 198 TILRSAEPILSPAWSP---DGKKLAYVSFERGRSAIYVQDLATGQRELVASFR--GINGAPSF---SPDGRRLALTLSRD 269 (433)
T ss_pred EeecCCCccccccCCC---CCCEEEEEecCCCCcEEEEEECCCCCEEEeccCC--CCccCceE---CCCCCEEEEEEeCC
Confidence 3445677899999999 9999988764 346999999887653322111 12224444 78888765 45555
Q ss_pred C--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCe
Q 000602 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRS 279 (1398)
Q Consensus 203 g--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~ 279 (1398)
| .|.+||+. .+. +..+..+.......+|+|||++|+.++. ++.
T Consensus 270 g~~~Iy~~d~~---------------------------------~g~-~~~lt~~~~~~~~~~~spDG~~l~f~sd~~g~ 315 (433)
T PRK04922 270 GNPEIYVMDLG---------------------------------SRQ-LTRLTNHFGIDTEPTWAPDGKSIYFTSDRGGR 315 (433)
T ss_pred CCceEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCC
Confidence 5 58888887 222 2344555556677899999999887764 444
Q ss_pred --EEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCC---cEEEEcCCCceEEEEecccCccEE
Q 000602 280 --ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 280 --V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg---~i~vWd~~g~~l~~l~~h~~~~V~ 352 (1398)
|.++++.+++. + .+..+.......+|+ +++|+..+.++ .|.+||+.+.....+.. .. ...
T Consensus 316 ~~iy~~dl~~g~~------~-----~lt~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~~Lt~-~~-~~~ 382 (433)
T PRK04922 316 PQIYRVAASGGSA------E-----RLTFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVRTLTP-GS-LDE 382 (433)
T ss_pred ceEEEEECCCCCe------E-----EeecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeEECCC-CC-CCC
Confidence 55556655433 1 222223334457787 56776654433 58999994333334432 22 245
Q ss_pred EEEEcCCCCEEEEEEcC---CcEEEEEcCCCC
Q 000602 353 RCLYDSLSSLLVTAGFD---SAIKVHQFQAFL 381 (1398)
Q Consensus 353 sl~~spdg~~latgg~D---g~I~iwdl~~~~ 381 (1398)
...|+|||++|+..+.+ +.+.++++.+..
T Consensus 383 ~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 383 SPSFAPNGSMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCCc
Confidence 67899999987776653 356667776543
|
|
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.6e-07 Score=98.16 Aligned_cols=269 Identities=15% Similarity=0.108 Sum_probs=163.5
Q ss_pred CcEEEEECCCCeEEE--EEEeeeCccEEEEEEeccccccCCCCccceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccc
Q 000602 44 SQVLLYDLEAGTLIR--PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCV 120 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~--~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~ 120 (1398)
|.+.+|++.+.+.+. +++.-....+..|.|+-. ..+| +..++. -..|.|.++...... ...
T Consensus 46 Gkl~Lys~~d~~~~~l~~~q~~dts~~~dm~w~~~----~~~g---~~~l~~a~a~G~i~~~r~~~~~---------ss~ 109 (339)
T KOG0280|consen 46 GKLHLYSLEDMKLSPLDTLQCTDTSTEFDMLWRIR----ETDG---DFNLLDAHARGQIQLYRNDEDE---------SSV 109 (339)
T ss_pred cceEEEeecccccCccceeeeecccccceeeeeec----cCCc---cceeeeccccceEEEEeeccce---------eee
Confidence 468899988765543 444333345777777722 2333 223333 347999999887422 000
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE--EEEccCCcceEEEEEeecCCCCCcEEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIAS 198 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~--~~l~~~~~~~~~s~~~~~~s~d~~~las 198 (1398)
.++.+...+-....-.++.|++ .+..++++..+|.+.+-+...+... +..+.|+ ..++...|. ..+.+++++
T Consensus 110 ~L~~ls~~ki~~~~~lslD~~~---~~~~i~vs~s~G~~~~v~~t~~~le~vq~wk~He-~E~Wta~f~--~~~pnlvyt 183 (339)
T KOG0280|consen 110 HLRGLSSKKISVVEALSLDIST---SGTKIFVSDSRGSISGVYETEMVLEKVQTWKVHE-FEAWTAKFS--DKEPNLVYT 183 (339)
T ss_pred eecccchhhhhheeeeEEEeec---cCceEEEEcCCCcEEEEecceeeeeecccccccc-eeeeeeecc--cCCCceEEe
Confidence 1222221111111346788888 8888999999999996665544332 2444444 346666663 334579999
Q ss_pred EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEE-EEEeCccCCEEEEEEcC-CCCEEEEEEC
Q 000602 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNL-FRLVGHEGSIFRIEWSS-CGSKLVSVSD 276 (1398)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~-~~l~gH~~~I~~vafsp-dg~~LaS~s~ 276 (1398)
|+.|+.+..||++- +++.+ +..+-|...|.+|.-+| .+.++++|+.
T Consensus 184 GgDD~~l~~~D~R~--------------------------------p~~~i~~n~kvH~~GV~SI~ss~~~~~~I~TGsY 231 (339)
T KOG0280|consen 184 GGDDGSLSCWDIRI--------------------------------PKTFIWHNSKVHTSGVVSIYSSPPKPTYIATGSY 231 (339)
T ss_pred cCCCceEEEEEecC--------------------------------CcceeeecceeeecceEEEecCCCCCceEEEecc
Confidence 99999999999981 12223 22566889999999886 6789999999
Q ss_pred CCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcCC---Cc---eEEEEeccc
Q 000602 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSD---GK---QLKMIKEHI 347 (1398)
Q Consensus 277 Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~~---g~---~l~~l~~h~ 347 (1398)
|-.|++||.++-..+ + ....-.+.||.+..+| ..++.++.-.-.+|-+.+ .+ .+...+.|.
T Consensus 232 De~i~~~DtRnm~kP----l------~~~~v~GGVWRi~~~p~~~~~lL~~CMh~G~ki~~~~~~~~e~~~~~~s~~~hd 301 (339)
T KOG0280|consen 232 DECIRVLDTRNMGKP----L------FKAKVGGGVWRIKHHPEIFHRLLAACMHNGAKILDSSDKVLEFQIVLPSDKIHD 301 (339)
T ss_pred ccceeeeehhcccCc----c------ccCccccceEEEEecchhhhHHHHHHHhcCceEEEecccccchheeeecccccc
Confidence 999999999864331 1 1122347899999985 233444444445666652 22 233444555
Q ss_pred CccEEEEEEcCCCCEEEEEEc-CCcEE-EEEc
Q 000602 348 GRGIWRCLYDSLSSLLVTAGF-DSAIK-VHQF 377 (1398)
Q Consensus 348 ~~~V~sl~~spdg~~latgg~-Dg~I~-iwdl 377 (1398)
. -...-.|.....+|+|++. |+.++ +|-.
T Consensus 302 S-l~YG~DWd~~~~~lATCsFYDk~~~~~Wl~ 332 (339)
T KOG0280|consen 302 S-LCYGGDWDSKDSFLATCSFYDKKIRQLWLH 332 (339)
T ss_pred c-eeeccccccccceeeeeeccccceeeeeee
Confidence 4 2444455444457888663 66644 6643
|
|
| >KOG2321 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.7e-07 Score=105.66 Aligned_cols=278 Identities=12% Similarity=0.087 Sum_probs=171.4
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEc--CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
.-+.|..+ ||| .++.+.| ...|++||+..-. ++..+.+. ..|..+....
T Consensus 53 ast~ik~s-------~DG----qY~lAtG~YKP~ikvydlanLS-------------LKFERhlD---ae~V~feiLs-- 103 (703)
T KOG2321|consen 53 ASTRIKVS-------PDG----QYLLATGTYKPQIKVYDLANLS-------------LKFERHLD---AEVVDFEILS-- 103 (703)
T ss_pred ccceeEec-------CCC----cEEEEecccCCceEEEEcccce-------------eeeeeccc---ccceeEEEec--
Confidence 35667788 999 5555555 6899999998532 44444332 2343333332
Q ss_pred CCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCC
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
.|-..++.-..|.+|.+..-...-....+....+ .++++ .+... |+.++....|+-.++.
T Consensus 104 DD~SK~v~L~~DR~IefHak~G~hy~~RIP~~GR----Dm~y~--~~scD-ly~~gsg~evYRlNLE------------- 163 (703)
T KOG2321|consen 104 DDYSKSVFLQNDRTIEFHAKYGRHYRTRIPKFGR----DMKYH--KPSCD-LYLVGSGSEVYRLNLE------------- 163 (703)
T ss_pred cchhhheEeecCceeeehhhcCeeeeeecCcCCc----ccccc--CCCcc-EEEeecCcceEEEEcc-------------
Confidence 2555666667788887754322111222222222 23332 23333 3334445567777777
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeee-eE
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS-SV 303 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~-~~ 303 (1398)
.+..+..+..-.+.+++|..++...+|+.|+.+|.|-.||.++... +..+.. ..
T Consensus 164 --------------------qGrfL~P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksr-----v~~l~~~~~ 218 (703)
T KOG2321|consen 164 --------------------QGRFLNPFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSR-----VGTLDAASS 218 (703)
T ss_pred --------------------ccccccccccccccceeeeecCccceEEecccCceEEEecchhhhh-----heeeecccc
Confidence 5666666766778999999999999999999999999999998655 222210 12
Q ss_pred EecCCc-----cEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCC--CCEEEEEEcCCcEE
Q 000602 304 LYGHNA-----RVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGFDSAIK 373 (1398)
Q Consensus 304 ~~gh~~-----~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spd--g~~latgg~Dg~I~ 373 (1398)
...|.+ .|+++.|. |-.++.|..+|.+.|||+ ..+++..-.....-+|..+.|.+. +..|++. ....++
T Consensus 219 v~s~pg~~~~~svTal~F~d~gL~~aVGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~k 297 (703)
T KOG2321|consen 219 VNSHPGGDAAPSVTALKFRDDGLHVAVGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILK 297 (703)
T ss_pred cCCCccccccCcceEEEecCCceeEEeeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEec-chHHhh
Confidence 223333 48999998 568999999999999999 444443322222236889999765 3455554 355899
Q ss_pred EEEcC-CCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc-CCcEEEEEeecC
Q 000602 374 VHQFQ-AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN-HGYLYHTKLCDM 450 (1398)
Q Consensus 374 iwdl~-~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~-~g~i~~~~l~~~ 450 (1398)
|||-. |.... ++ .....+..+++.|++.++..+. ++.+..+-+...
T Consensus 298 iWd~~~Gk~~a------------------si-------------Ept~~lND~C~~p~sGm~f~Ane~~~m~~yyiP~L 345 (703)
T KOG2321|consen 298 IWDECTGKPMA------------------SI-------------EPTSDLNDFCFVPGSGMFFTANESSKMHTYYIPSL 345 (703)
T ss_pred hcccccCCcee------------------ec-------------cccCCcCceeeecCCceEEEecCCCcceeEEcccc
Confidence 99983 22111 11 1123478899999876666554 455555444443
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.84 E-value=3.5e-06 Score=101.89 Aligned_cols=262 Identities=12% Similarity=0.066 Sum_probs=152.6
Q ss_pred CEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEE-EEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCC
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 36 ~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~-~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~ 113 (1398)
..+.+++ ++.|..+|..+|+.+.+++.... +. +.. .++ ..+++...++.+..+|.+++.
T Consensus 66 ~~v~v~~~~g~v~a~d~~tG~~~W~~~~~~~--~~~~p~---------v~~---~~v~v~~~~g~l~ald~~tG~----- 126 (377)
T TIGR03300 66 GKVYAADADGTVVALDAETGKRLWRVDLDER--LSGGVG---------ADG---GLVFVGTEKGEVIALDAEDGK----- 126 (377)
T ss_pred CEEEEECCCCeEEEEEccCCcEeeeecCCCC--cccceE---------EcC---CEEEEEcCCCEEEEEECCCCc-----
Confidence 4555555 78999999999999887765332 22 111 222 155555668999999987633
Q ss_pred CCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceE----EEEEeecC
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLWGD 189 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~----~s~~~~~~ 189 (1398)
.+..... .+.+.+.-.. .+..++.+..++.|..||.++|+.+.+......... .+..+
T Consensus 127 ----------~~W~~~~-~~~~~~~p~v----~~~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~~~~~~~~sp~~--- 188 (377)
T TIGR03300 127 ----------ELWRAKL-SSEVLSPPLV----ANGLVVVRTNDGRLTALDAATGERLWTYSRVTPALTLRGSASPVI--- 188 (377)
T ss_pred ----------Eeeeecc-CceeecCCEE----ECCEEEEECCCCeEEEEEcCCCceeeEEccCCCceeecCCCCCEE---
Confidence 2222111 1222221111 234566777899999999999998877654322110 01111
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc--CCEEEEEEcC-
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE--GSIFRIEWSS- 266 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~--~~I~~vafsp- 266 (1398)
.+..++.+..++.+..+|+.+++.. |... .....+.. ..+..+.-+|
T Consensus 189 --~~~~v~~~~~~g~v~ald~~tG~~~-----------------------W~~~-----~~~~~g~~~~~~~~~~~~~p~ 238 (377)
T TIGR03300 189 --ADGGVLVGFAGGKLVALDLQTGQPL-----------------------WEQR-----VALPKGRTELERLVDVDGDPV 238 (377)
T ss_pred --ECCEEEEECCCCEEEEEEccCCCEe-----------------------eeec-----cccCCCCCchhhhhccCCccE
Confidence 1236778888899999998743211 1100 00000000 0000000011
Q ss_pred -CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEe
Q 000602 267 -CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIK 344 (1398)
Q Consensus 267 -dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~ 344 (1398)
.+..+..++.++.++.||..+++.. - ... . .........++.++.++.||.+..+|. +|+.+....
T Consensus 239 ~~~~~vy~~~~~g~l~a~d~~tG~~~-----W-----~~~-~-~~~~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~ 306 (377)
T TIGR03300 239 VDGGQVYAVSYQGRVAALDLRSGRVL-----W-----KRD-A-SSYQGPAVDDNRLYVTDADGVVVALDRRSGSELWKND 306 (377)
T ss_pred EECCEEEEEEcCCEEEEEECCCCcEE-----E-----eec-c-CCccCceEeCCEEEEECCCCeEEEEECCCCcEEEccc
Confidence 3567788888999999999887541 0 111 1 112233445788899999999999999 788776553
Q ss_pred cccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 345 ~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
........+... .+..|++++.||.+.++|..
T Consensus 307 ~~~~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~ 338 (377)
T TIGR03300 307 ELKYRQLTAPAV--VGGYLVVGDFEGYLHWLSRE 338 (377)
T ss_pred cccCCccccCEE--ECCEEEEEeCCCEEEEEECC
Confidence 322212233333 35688999999999999984
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >PRK04922 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=4.7e-07 Score=111.21 Aligned_cols=231 Identities=13% Similarity=0.031 Sum_probs=140.9
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----CCeEEEEEecCCCCCCCCCCCccc
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d~~V~vwdl~~~~~~~~~~~~~~~ 119 (1398)
..|.+||..... ...+..+. ..+.+.+|+ ||| ..|+... ...|.+|++..+.
T Consensus 184 ~~l~i~D~~g~~-~~~lt~~~-~~v~~p~wS-------pDg----~~la~~s~~~~~~~l~~~dl~~g~----------- 239 (433)
T PRK04922 184 YALQVADSDGYN-PQTILRSA-EPILSPAWS-------PDG----KKLAYVSFERGRSAIYVQDLATGQ----------- 239 (433)
T ss_pred EEEEEECCCCCC-ceEeecCC-CccccccCC-------CCC----CEEEEEecCCCCcEEEEEECCCCC-----------
Confidence 369999986443 34444433 368899999 998 4555433 3569999987532
Q ss_pred ccceeeeecccCCCcEEEEEEEeecCCCcEEE-EEECCC--eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 120 ~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La-tgs~Dg--~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
.+.+.. +.+...+.+|+| ||+.|+ +.+.++ .|.+||+.+++... +..+. .......| ++|+..|
T Consensus 240 --~~~l~~---~~g~~~~~~~Sp---DG~~l~~~~s~~g~~~Iy~~d~~~g~~~~-lt~~~-~~~~~~~~---spDG~~l 306 (433)
T PRK04922 240 --RELVAS---FRGINGAPSFSP---DGRRLALTLSRDGNPEIYVMDLGSRQLTR-LTNHF-GIDTEPTW---APDGKSI 306 (433)
T ss_pred --EEEecc---CCCCccCceECC---CCCEEEEEEeCCCCceEEEEECCCCCeEE-CccCC-CCccceEE---CCCCCEE
Confidence 222322 333445789999 998775 445555 59999998876533 32221 22334555 7889888
Q ss_pred EEEE-CCCe--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE
Q 000602 197 ASGT-IYNE--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 197 asgs-~dg~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS 273 (1398)
+..+ .+|. |.++++. .++ ...+..+.......+|+|||++|+.
T Consensus 307 ~f~sd~~g~~~iy~~dl~---------------------------------~g~-~~~lt~~g~~~~~~~~SpDG~~Ia~ 352 (433)
T PRK04922 307 YFTSDRGGRPQIYRVAAS---------------------------------GGS-AERLTFQGNYNARASVSPDGKKIAM 352 (433)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-eEEeecCCCCccCEEECCCCCEEEE
Confidence 7765 4455 4445544 111 1222223344557899999999987
Q ss_pred EECCC---eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcCCCceEEEEec
Q 000602 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQLKMIKE 345 (1398)
Q Consensus 274 ~s~Dg---~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~~g~~l~~l~~ 345 (1398)
.+.++ .|.+||+.++.. . .+. +........|+ +++|+..+.+ ..+.++++++.....+..
T Consensus 353 ~~~~~~~~~I~v~d~~~g~~------~-----~Lt-~~~~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~~~~l~~ 420 (433)
T PRK04922 353 VHGSGGQYRIAVMDLSTGSV------R-----TLT-PGSLDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRVRQRLVS 420 (433)
T ss_pred EECCCCceeEEEEECCCCCe------E-----ECC-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCCCceEEccc
Confidence 65443 689999987654 1 222 22233456777 5666655543 357777887777777766
Q ss_pred ccCccEEEEEEcC
Q 000602 346 HIGRGIWRCLYDS 358 (1398)
Q Consensus 346 h~~~~V~sl~~sp 358 (1398)
+.+ .+...+|+|
T Consensus 421 ~~g-~~~~p~wsp 432 (433)
T PRK04922 421 ADG-EVREPAWSP 432 (433)
T ss_pred CCC-CCCCCccCC
Confidence 555 366777776
|
|
| >PRK05137 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=1.3e-06 Score=107.49 Aligned_cols=229 Identities=12% Similarity=0.071 Sum_probs=140.4
Q ss_pred cEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----CCeEEEEEecCCCCCCCCCCCcccc
Q 000602 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETCV 120 (1398)
Q Consensus 45 ~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d~~V~vwdl~~~~~~~~~~~~~~~~ 120 (1398)
.|.++|.... ....+..+.. .+...+|+ ||| ..|+... +..|.+||+..+.
T Consensus 183 ~l~~~d~dg~-~~~~lt~~~~-~v~~p~wS-------pDG----~~lay~s~~~g~~~i~~~dl~~g~------------ 237 (435)
T PRK05137 183 RLAIMDQDGA-NVRYLTDGSS-LVLTPRFS-------PNR----QEITYMSYANGRPRVYLLDLETGQ------------ 237 (435)
T ss_pred EEEEECCCCC-CcEEEecCCC-CeEeeEEC-------CCC----CEEEEEEecCCCCEEEEEECCCCc------------
Confidence 7899998544 3345554444 79999999 998 4555432 4689999997532
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEE-EEECCCe--EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La-tgs~Dg~--V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la 197 (1398)
.+ .+..+.+.+.+.+|+| ||+.|+ +.+.++. |.+||+.++... .+.... .......| +||+..|+
T Consensus 238 -~~---~l~~~~g~~~~~~~SP---DG~~la~~~~~~g~~~Iy~~d~~~~~~~-~Lt~~~-~~~~~~~~---spDG~~i~ 305 (435)
T PRK05137 238 -RE---LVGNFPGMTFAPRFSP---DGRKVVMSLSQGGNTDIYTMDLRSGTTT-RLTDSP-AIDTSPSY---SPDGSQIV 305 (435)
T ss_pred -EE---EeecCCCcccCcEECC---CCCEEEEEEecCCCceEEEEECCCCceE-EccCCC-CccCceeE---cCCCCEEE
Confidence 12 2334556778899999 998775 4455554 777788877653 333222 22334444 78898887
Q ss_pred EEEC-CC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEE
Q 000602 198 SGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1398)
Q Consensus 198 sgs~-dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~ 274 (1398)
..+. +| .|.++|+. .+. ...+..+.+.+....|+|||++|+..
T Consensus 306 f~s~~~g~~~Iy~~d~~---------------------------------g~~-~~~lt~~~~~~~~~~~SpdG~~ia~~ 351 (435)
T PRK05137 306 FESDRSGSPQLYVMNAD---------------------------------GSN-PRRISFGGGRYSTPVWSPRGDLIAFT 351 (435)
T ss_pred EEECCCCCCeEEEEECC---------------------------------CCC-eEEeecCCCcccCeEECCCCCEEEEE
Confidence 7653 33 57777765 121 22333345567778999999999877
Q ss_pred ECC---CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC------CcEEEEcCCCceEEEE
Q 000602 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED------CTCRVWGSDGKQLKMI 343 (1398)
Q Consensus 275 s~D---g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D------g~i~vWd~~g~~l~~l 343 (1398)
+.+ ..|.+||+..+.. + .+ .....+....|+ ++.|+..+.+ ..+.++|+++.....+
T Consensus 352 ~~~~~~~~i~~~d~~~~~~------~-----~l-t~~~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~~~l 419 (435)
T PRK05137 352 KQGGGQFSIGVMKPDGSGE------R-----IL-TSGFLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNEREV 419 (435)
T ss_pred EcCCCceEEEEEECCCCce------E-----ec-cCCCCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCceEEc
Confidence 654 3578888755432 1 11 122245667787 4566554432 2577777766555555
Q ss_pred ecccCccEEEEEEcC
Q 000602 344 KEHIGRGIWRCLYDS 358 (1398)
Q Consensus 344 ~~h~~~~V~sl~~sp 358 (1398)
.. .+ .+...+|+|
T Consensus 420 ~~-~~-~~~~p~Wsp 432 (435)
T PRK05137 420 PT-PG-DASDPAWSP 432 (435)
T ss_pred cC-CC-CccCcccCC
Confidence 43 33 255666665
|
|
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.78 E-value=1e-06 Score=107.90 Aligned_cols=193 Identities=10% Similarity=-0.006 Sum_probs=122.1
Q ss_pred ecccCCCcEEEEEEEeecCCCcEEEEEECC---CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE-EEECC
Q 000602 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1398)
Q Consensus 127 ~l~~h~~~V~~v~fsp~~~dg~~Latgs~D---g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~d 202 (1398)
.+..+...+.+.+|+| ||+.|+..+.+ ..|.+||+.+++.......+ .......| +||+..|+ +.+.+
T Consensus 190 ~l~~~~~~v~~p~wSP---DG~~la~~s~~~~~~~I~~~dl~~g~~~~l~~~~--g~~~~~~~---SPDG~~la~~~~~~ 261 (427)
T PRK02889 190 SALSSPEPIISPAWSP---DGTKLAYVSFESKKPVVYVHDLATGRRRVVANFK--GSNSAPAW---SPDGRTLAVALSRD 261 (427)
T ss_pred EeccCCCCcccceEcC---CCCEEEEEEccCCCcEEEEEECCCCCEEEeecCC--CCccceEE---CCCCCEEEEEEccC
Confidence 3446778899999999 99999877643 45999999988654322111 12234445 78898776 56778
Q ss_pred CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCeEE
Q 000602 203 NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1398)
Q Consensus 203 g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~V~ 281 (1398)
+...+|.+.. .......+..+.+......|+|||++|+..+. ++...
T Consensus 262 g~~~Iy~~d~--------------------------------~~~~~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~ 309 (427)
T PRK02889 262 GNSQIYTVNA--------------------------------DGSGLRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQ 309 (427)
T ss_pred CCceEEEEEC--------------------------------CCCCcEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcE
Confidence 8877777651 11123345555566677899999999887664 46777
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCC---cEEEEcCCCceEEEEecccCccEEEEEE
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg---~i~vWd~~g~~l~~l~~h~~~~V~sl~~ 356 (1398)
||.+...... .+ .+..+........|+ +++|+..+.++ .|.+||+.+.....+.... ......|
T Consensus 310 Iy~~~~~~g~----~~-----~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt~~~--~~~~p~~ 378 (427)
T PRK02889 310 IYRMPASGGA----AQ-----RVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALTDTT--RDESPSF 378 (427)
T ss_pred EEEEECCCCc----eE-----EEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEccCCC--CccCceE
Confidence 7766432110 11 112222233456676 57777666554 5999999433344443322 2467899
Q ss_pred cCCCCEEEEEEcCC
Q 000602 357 DSLSSLLVTAGFDS 370 (1398)
Q Consensus 357 spdg~~latgg~Dg 370 (1398)
+|||+.|+..+.++
T Consensus 379 spdg~~l~~~~~~~ 392 (427)
T PRK02889 379 APNGRYILYATQQG 392 (427)
T ss_pred CCCCCEEEEEEecC
Confidence 99999888777544
|
|
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.77 E-value=2.2e-06 Score=105.26 Aligned_cols=199 Identities=13% Similarity=0.064 Sum_probs=126.3
Q ss_pred ecccCCCcEEEEEEEeecCCCcEEEEEECC---CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE-EEECC
Q 000602 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1398)
Q Consensus 127 ~l~~h~~~V~~v~fsp~~~dg~~Latgs~D---g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~d 202 (1398)
.+..+...+.+.+|+| ||++|+.+..+ ..|.+||+.+++....... . ....++.| +|++..|+ +.+.+
T Consensus 184 ~l~~~~~~~~~p~~Sp---dg~~la~~~~~~~~~~i~v~d~~~g~~~~~~~~-~-~~~~~~~~---spDg~~l~~~~~~~ 255 (417)
T TIGR02800 184 TITRSREPILSPAWSP---DGQKLAYVSFESGKPEIYVQDLATGQREKVASF-P-GMNGAPAF---SPDGSKLAVSLSKD 255 (417)
T ss_pred EeecCCCceecccCCC---CCCEEEEEEcCCCCcEEEEEECCCCCEEEeecC-C-CCccceEE---CCCCCEEEEEECCC
Confidence 3445667789999999 99999887643 4799999988765332221 1 12334455 67887665 44444
Q ss_pred C--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-C-
Q 000602 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R- 278 (1398)
Q Consensus 203 g--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D-g- 278 (1398)
+ .|.+|++. .+. ...+..+........|+||+++|+.++.. +
T Consensus 256 ~~~~i~~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~s~dg~~l~~~s~~~g~ 301 (417)
T TIGR02800 256 GNPDIYVMDLD---------------------------------GKQ-LTRLTNGPGIDTEPSWSPDGKSIAFTSDRGGS 301 (417)
T ss_pred CCccEEEEECC---------------------------------CCC-EEECCCCCCCCCCEEECCCCCEEEEEECCCCC
Confidence 4 57778876 121 22334444555567899999998876653 3
Q ss_pred -eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCC---cEEEEcCCCceEEEEecccCccEE
Q 000602 279 -SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 279 -~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg---~i~vWd~~g~~l~~l~~h~~~~V~ 352 (1398)
.|.++|+.+++. + .+..+...+....|+ +++|+.++.++ .|.+||+.+.....+.... ...
T Consensus 302 ~~iy~~d~~~~~~------~-----~l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~~~l~~~~--~~~ 368 (417)
T TIGR02800 302 PQIYMMDADGGEV------R-----RLTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGERVLTDTG--LDE 368 (417)
T ss_pred ceEEEEECCCCCE------E-----EeecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCeEEccCCC--CCC
Confidence 577777766543 1 333344556677787 57777777765 7888888444444444322 244
Q ss_pred EEEEcCCCCEEEEEEcCC---cEEEEEcCCC
Q 000602 353 RCLYDSLSSLLVTAGFDS---AIKVHQFQAF 380 (1398)
Q Consensus 353 sl~~spdg~~latgg~Dg---~I~iwdl~~~ 380 (1398)
...|+|+|++|+....++ .+.+.+..+.
T Consensus 369 ~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~ 399 (417)
T TIGR02800 369 SPSFAPNGRMILYATTRGGRGVLGLVSTDGR 399 (417)
T ss_pred CceECCCCCEEEEEEeCCCcEEEEEEECCCc
Confidence 568999999888877654 3455555443
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >PRK02889 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.76 E-value=6.5e-07 Score=109.64 Aligned_cols=199 Identities=14% Similarity=0.081 Sum_probs=123.5
Q ss_pred cEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEe--C--CcEEEEECCCCeEEEEEEeeeCccEEEEEEe
Q 000602 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 5 tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~--d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs 74 (1398)
.+.+||..... +..++.+.+|+ || ++.|+..+ + ..|.+||+.+++... +....+ .+...+|+
T Consensus 177 ~L~~~D~dG~~~~~l~~~~~~v~~p~wS--PD----G~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g-~~~~~~~S 248 (427)
T PRK02889 177 QLQISDADGQNAQSALSSPEPIISPAWS--PD----GTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKG-SNSAPAWS 248 (427)
T ss_pred EEEEECCCCCCceEeccCCCCcccceEc--CC----CCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCC-CccceEEC
Confidence 46677764322 55778999999 99 78887765 2 569999999887643 332333 46678999
Q ss_pred ccccccCCCCccceeEEEEE-cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE
Q 000602 75 FINCTEGSVSTRVTFEVALF-GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~-gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg 153 (1398)
|||+ .++.+. .++...||.++... .....+..+...+....|+| ||+.|+..
T Consensus 249 -------PDG~---~la~~~~~~g~~~Iy~~d~~~--------------~~~~~lt~~~~~~~~~~wSp---DG~~l~f~ 301 (427)
T PRK02889 249 -------PDGR---TLAVALSRDGNSQIYTVNADG--------------SGLRRLTQSSGIDTEPFFSP---DGRSIYFT 301 (427)
T ss_pred -------CCCC---EEEEEEccCCCceEEEEECCC--------------CCcEECCCCCCCCcCeEEcC---CCCEEEEE
Confidence 9983 333333 36777777765422 11233444555567788999 99988766
Q ss_pred EC-CCeEEEEEc--CCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCC---eEEEEEcccCCccccCCCCCCCCC
Q 000602 154 CS-DNSIRVWDI--SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN---EIIVWKVDWEHVAPLLNSPEGNHA 227 (1398)
Q Consensus 154 s~-Dg~V~vWd~--~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg---~I~vWd~~~~~~~~~~~~~~~~s~ 227 (1398)
+. ++...||.+ .++.. ..+.... .......+ +|++.+|+..+.++ .|.+||+.
T Consensus 302 s~~~g~~~Iy~~~~~~g~~-~~lt~~g-~~~~~~~~---SpDG~~Ia~~s~~~g~~~I~v~d~~---------------- 360 (427)
T PRK02889 302 SDRGGAPQIYRMPASGGAA-QRVTFTG-SYNTSPRI---SPDGKLLAYISRVGGAFKLYVQDLA---------------- 360 (427)
T ss_pred ecCCCCcEEEEEECCCCce-EEEecCC-CCcCceEE---CCCCCEEEEEEccCCcEEEEEEECC----------------
Confidence 54 456666655 44433 2222111 11223444 78999998776554 68999987
Q ss_pred CCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCC
Q 000602 228 HGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1398)
Q Consensus 228 ~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg 278 (1398)
.+... .+..+ .......|+|||+.|+.++.++
T Consensus 361 -----------------~g~~~-~lt~~-~~~~~p~~spdg~~l~~~~~~~ 392 (427)
T PRK02889 361 -----------------TGQVT-ALTDT-TRDESPSFAPNGRYILYATQQG 392 (427)
T ss_pred -----------------CCCeE-EccCC-CCccCceECCCCCEEEEEEecC
Confidence 22211 22221 2346789999999988777544
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.73 E-value=1.4e-05 Score=92.89 Aligned_cols=267 Identities=12% Similarity=0.011 Sum_probs=161.7
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE---------cCCeEEEEEecCCCCCCCCC
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF---------GEKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~---------gd~~V~vwdl~~~~~~~~~~ 114 (1398)
+.|.|.|..+++.+.++..... -+++ ++ |||+ ..+++.. .+..|.+||..+
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~--P~~~-~s-------pDg~--~lyva~~~~~R~~~G~~~d~V~v~D~~t-------- 86 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFL--PNPV-VA-------SDGS--FFAHASTVYSRIARGKRTDYVEVIDPQT-------- 86 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCC--Ccee-EC-------CCCC--EEEEEeccccccccCCCCCEEEEEECcc--------
Confidence 7899999999999999986443 4455 88 9984 2344444 468999999987
Q ss_pred CCcccccceeeeecccC-------CCcEEEEEEEeecCCCcEEEEEE-C-CCeEEEEEcCCCeEEEEEccCCcceEEEEE
Q 000602 115 QPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIGC-S-DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~~h-------~~~V~~v~fsp~~~dg~~Latgs-~-Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~ 185 (1398)
++.+..+.-- ......++++| ||++|++.. . ++.|.+.|+.+++.+.++..+....+|..
T Consensus 87 -------~~~~~~i~~p~~p~~~~~~~~~~~~ls~---dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~vy~t- 155 (352)
T TIGR02658 87 -------HLPIADIELPEGPRFLVGTYPWMTSLTP---DNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYHIFPT- 155 (352)
T ss_pred -------CcEEeEEccCCCchhhccCccceEEECC---CCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcEEEEe-
Confidence 3444444321 12335788999 999988765 3 79999999999999999887665444442
Q ss_pred eecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEE-EE
Q 000602 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRI-EW 264 (1398)
Q Consensus 186 ~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~v-af 264 (1398)
+.+. ..+-+.||......+... ++. .......+.+-...++.= .|
T Consensus 156 ----~e~~--~~~~~~Dg~~~~v~~d~~---------------------g~~-------~~~~~~vf~~~~~~v~~rP~~ 201 (352)
T TIGR02658 156 ----ANDT--FFMHCRDGSLAKVGYGTK---------------------GNP-------KIKPTEVFHPEDEYLINHPAY 201 (352)
T ss_pred ----cCCc--cEEEeecCceEEEEecCC---------------------Cce-------EEeeeeeecCCccccccCCce
Confidence 2222 223345565555444410 000 000000111100111100 44
Q ss_pred cC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEE--ecCCccEEEEEEc--CCEEEEEe----------CCCc
Q 000602 265 SS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLT--DSFIITAG----------EDCT 329 (1398)
Q Consensus 265 sp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~--~gh~~~V~~l~~s--~~~l~sgs----------~Dg~ 329 (1398)
.+ +|+++..... |+|.+-|+..........+..+..... .-....+.-++++ ++.++.+. ..+.
T Consensus 202 ~~~dg~~~~vs~e-G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~ 280 (352)
T TIGR02658 202 SNKSGRLVWPTYT-GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRF 280 (352)
T ss_pred EcCCCcEEEEecC-CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCE
Confidence 56 7777766655 999999976643311000111100000 0022233347777 46666532 2247
Q ss_pred EEEEcC-CCceEEEEecccCccEEEEEEcCCCC-EEEEEE-cCCcEEEEEcC
Q 000602 330 CRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTAG-FDSAIKVHQFQ 378 (1398)
Q Consensus 330 i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~latgg-~Dg~I~iwdl~ 378 (1398)
|.++|. +++.+..+..-. .++.++++||++ +|++.. .++.|.++|..
T Consensus 281 V~ViD~~t~kvi~~i~vG~--~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 281 LFVVDAKTGKRLRKIELGH--EIDSINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred EEEEECCCCeEEEEEeCCC--ceeeEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 999999 788888776533 589999999999 777666 58889999984
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.72 E-value=8.4e-07 Score=95.84 Aligned_cols=131 Identities=12% Similarity=0.261 Sum_probs=94.8
Q ss_pred CcEEEEECC-CCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc--CCeEEEEEecCCCCCCCCCCCcccc
Q 000602 44 SQVLLYDLE-AGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCV 120 (1398)
Q Consensus 44 g~I~Iwd~~-tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g--d~~V~vwdl~~~~~~~~~~~~~~~~ 120 (1398)
+...||-+. .+..+..+......+|+.++|+ |+|+ .++++.| ++.|.+||++
T Consensus 37 ~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~Ws-------P~g~---~favi~g~~~~~v~lyd~~--------------- 91 (194)
T PF08662_consen 37 GEFELFYLNEKNIPVESIELKKEGPIHDVAWS-------PNGN---EFAVIYGSMPAKVTLYDVK--------------- 91 (194)
T ss_pred eeEEEEEEecCCCccceeeccCCCceEEEEEC-------cCCC---EEEEEEccCCcccEEEcCc---------------
Confidence 345555552 2344455554444479999999 9883 5656655 5789999996
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECC---CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~D---g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la 197 (1398)
.+.+..+. ...++.+.|+| +|++|++|+.+ |.|.+||..+.+.+.+...+. +..+.| +|+|.+|+
T Consensus 92 -~~~i~~~~--~~~~n~i~wsP---~G~~l~~~g~~n~~G~l~~wd~~~~~~i~~~~~~~---~t~~~W---sPdGr~~~ 159 (194)
T PF08662_consen 92 -GKKIFSFG--TQPRNTISWSP---DGRFLVLAGFGNLNGDLEFWDVRKKKKISTFEHSD---ATDVEW---SPDGRYLA 159 (194)
T ss_pred -ccEeEeec--CCCceEEEECC---CCCEEEEEEccCCCcEEEEEECCCCEEeeccccCc---EEEEEE---cCCCCEEE
Confidence 23444443 46788999999 99999998754 569999999888887765432 345566 89999999
Q ss_pred EEE------CCCeEEEEEcc
Q 000602 198 SGT------IYNEIIVWKVD 211 (1398)
Q Consensus 198 sgs------~dg~I~vWd~~ 211 (1398)
+++ .|+.++||+..
T Consensus 160 ta~t~~r~~~dng~~Iw~~~ 179 (194)
T PF08662_consen 160 TATTSPRLRVDNGFKIWSFQ 179 (194)
T ss_pred EEEeccceeccccEEEEEec
Confidence 976 37889999987
|
|
| >PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins | Back alignment and domain information |
|---|
Probab=98.71 E-value=8.4e-07 Score=95.84 Aligned_cols=154 Identities=15% Similarity=0.268 Sum_probs=105.5
Q ss_pred EEEEEeecCCCcEEEEEEC----------CCeEEEEEcCC-CeEEEEEccCCcceEEEEEeecCCCCCcEEEE--EECCC
Q 000602 137 DVCFLKVCNGNRSLAIGCS----------DNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIAS--GTIYN 203 (1398)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~----------Dg~V~vWd~~~-~~~~~~l~~~~~~~~~s~~~~~~s~d~~~las--gs~dg 203 (1398)
.+.|+| +|++|++-.. -+...+|.++. +.....+.......+..++| +|++..++. |..++
T Consensus 10 ~~~W~~---~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~i~l~~~~~I~~~~W---sP~g~~favi~g~~~~ 83 (194)
T PF08662_consen 10 KLHWQP---SGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVESIELKKEGPIHDVAW---SPNGNEFAVIYGSMPA 83 (194)
T ss_pred EEEecc---cCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccceeeccCCCceEEEEE---CcCCCEEEEEEccCCc
Confidence 567777 8876655332 23355665532 23344444333334778887 778887654 55678
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC---CeE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD---RSA 280 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D---g~V 280 (1398)
.|.+||++ .+.+..+ +...++.|.|+|+|++|+.++.+ |.|
T Consensus 84 ~v~lyd~~----------------------------------~~~i~~~--~~~~~n~i~wsP~G~~l~~~g~~n~~G~l 127 (194)
T PF08662_consen 84 KVTLYDVK----------------------------------GKKIFSF--GTQPRNTISWSPDGRFLVLAGFGNLNGDL 127 (194)
T ss_pred ccEEEcCc----------------------------------ccEeEee--cCCCceEEEECCCCCEEEEEEccCCCcEE
Confidence 99999986 3344444 35678899999999999998743 679
Q ss_pred EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeC------CCcEEEEcCCCceEEEEe
Q 000602 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE------DCTCRVWGSDGKQLKMIK 344 (1398)
Q Consensus 281 ~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~------Dg~i~vWd~~g~~l~~l~ 344 (1398)
.+||..+.+. + ....|. .+..++|+ +++|+++.. |..++||++.|+.+....
T Consensus 128 ~~wd~~~~~~-----i------~~~~~~-~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G~~l~~~~ 187 (194)
T PF08662_consen 128 EFWDVRKKKK-----I------STFEHS-DATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQGRLLYKKP 187 (194)
T ss_pred EEEECCCCEE-----e------eccccC-cEEEEEEcCCCCEEEEEEeccceeccccEEEEEecCeEeEecc
Confidence 9999997554 1 223333 47889998 588988874 788999999998876543
|
|
| >KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown] | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.2e-07 Score=101.54 Aligned_cols=221 Identities=14% Similarity=0.164 Sum_probs=158.5
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEc-CCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI-SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~-~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg 199 (1398)
+..+++.++||.+.|++....| ...-+.+.+.|.+++||-- +.++.-..+.......+.++.+ ..+...|+.|
T Consensus 13 kp~ll~~~eG~~d~vn~~~l~~---~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y---~~e~~~L~vg 86 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAILIP---KEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEY---VSESRRLYVG 86 (404)
T ss_pred chhhhhhhcCchhhhhhheecc---CCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeee---eccceEEEEE
Confidence 3567888999999999999998 7777999999999999954 3454433333222222333333 4567789999
Q ss_pred ECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCe
Q 000602 200 TIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS 279 (1398)
Q Consensus 200 s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~ 279 (1398)
-..|++.-+.+... . ......+....|...|+.+-|+...+++++.+.|..
T Consensus 87 ~~ngtvtefs~sed----------------------------f-nkm~~~r~~~~h~~~v~~~if~~~~e~V~s~~~dk~ 137 (404)
T KOG1409|consen 87 QDNGTVTEFALSED----------------------------F-NKMTFLKDYLAHQARVSAIVFSLTHEWVLSTGKDKQ 137 (404)
T ss_pred EecceEEEEEhhhh----------------------------h-hhcchhhhhhhhhcceeeEEecCCceeEEEeccccc
Confidence 99999998887610 0 022334455678889999999888888888888866
Q ss_pred EEEEEcCCCccc-----------------------CC----------CCceEeeeeEEecCCccEEEEEEc--CCEEEEE
Q 000602 280 ARIWEVRAEYWK-----------------------DS----------DSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1398)
Q Consensus 280 V~iWd~~~~~~~-----------------------~~----------~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sg 324 (1398)
+.---.+.+... .. .....+ ..+.+|.+.+.+++|. +..+++|
T Consensus 138 ~~~hc~e~~~~lg~Y~~~~~~t~~~~d~~~~fvGd~~gqvt~lr~~~~~~~~i--~~~~~h~~~~~~l~Wd~~~~~LfSg 215 (404)
T KOG1409|consen 138 FAWHCTESGNRLGGYNFETPASALQFDALYAFVGDHSGQITMLKLEQNGCQLI--TTFNGHTGEVTCLKWDPGQRLLFSG 215 (404)
T ss_pred eEEEeeccCCcccceEeeccCCCCceeeEEEEecccccceEEEEEeecCCceE--EEEcCcccceEEEEEcCCCcEEEec
Confidence 543322222211 00 001112 3677999999999998 5899999
Q ss_pred eCCCcEEEEcCCC--ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 325 GEDCTCRVWGSDG--KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 325 s~Dg~i~vWd~~g--~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
..|..+.+||+-+ .....+.+|.. .|..+...+--+.+.+++.||.|.+|+++.
T Consensus 216 ~~d~~vi~wdigg~~g~~~el~gh~~-kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 216 ASDHSVIMWDIGGRKGTAYELQGHND-KVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cccCceEEEeccCCcceeeeeccchh-hhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 9999999999933 34566788888 498888888888999999999999999954
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.0001 Score=87.48 Aligned_cols=282 Identities=11% Similarity=0.084 Sum_probs=178.7
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe---------------EEEEEEeeeCccEEEEEEeccccccC
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT---------------LIRPFQVFHGIRLHGISCNFINCTEG 81 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~---------------~l~~~~~~~~~~V~~i~fs~~~~~~~ 81 (1398)
....|++|+ .+ ..|+|+|+ ||.++|-.+.+.. .-+++.+|.+ .|.-+.|+
T Consensus 15 vkL~c~~WN--ke----~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~-sV~vvTWN------- 80 (1189)
T KOG2041|consen 15 VKLHCAEWN--KE----SGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNA-SVMVVTWN------- 80 (1189)
T ss_pred ceEEEEEEc--cc----CCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcc-eEEEEEec-------
Confidence 446799999 66 67999988 8999999876521 1245667766 79999998
Q ss_pred CCCccceeEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEE
Q 000602 82 SVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIR 160 (1398)
Q Consensus 82 pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~ 160 (1398)
... ..|.++. +|-|.||-+-.+. +-....-.....-|.+++|+. +|..++....||.|.
T Consensus 81 e~~----QKLTtSDt~GlIiVWmlykgs-------------W~EEMiNnRnKSvV~SmsWn~---dG~kIcIvYeDGavI 140 (1189)
T KOG2041|consen 81 ENN----QKLTTSDTSGLIIVWMLYKGS-------------WCEEMINNRNKSVVVSMSWNL---DGTKICIVYEDGAVI 140 (1189)
T ss_pred ccc----ccccccCCCceEEEEeeeccc-------------HHHHHhhCcCccEEEEEEEcC---CCcEEEEEEccCCEE
Confidence 443 5677666 7999999886532 111111123456789999999 999999999999998
Q ss_pred EEEcCCCeEE-EEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 161 VWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 161 vWd~~~~~~~-~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
|=.++..+.. +.+++.. +..+.+ ++|...+..+-..|.++++|.+.+=... ..+
T Consensus 141 VGsvdGNRIwgKeLkg~~---l~hv~w---s~D~~~~Lf~~ange~hlydnqgnF~~K-------------------l~~ 195 (1189)
T KOG2041|consen 141 VGSVDGNRIWGKELKGQL---LAHVLW---SEDLEQALFKKANGETHLYDNQGNFERK-------------------LEK 195 (1189)
T ss_pred EEeeccceecchhcchhe---ccceee---cccHHHHHhhhcCCcEEEecccccHHHh-------------------hhh
Confidence 8777554432 2222211 112333 6777788888888999999977210000 000
Q ss_pred cccccceeEEEEEeCccCCEEEEEEc--------CCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccE
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWS--------SCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafs--------pdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V 311 (1398)
-... .+. ..+......|-.+.|. ||...|+.|-..|.+.|-.-.+...+ .+..-...+
T Consensus 196 ~c~V-n~t--g~~s~~~~kia~i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~P-----------vv~dtgm~~ 261 (1189)
T KOG2041|consen 196 DCEV-NGT--GIFSNFPTKIAEIEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEP-----------VVVDTGMKI 261 (1189)
T ss_pred ceEE-eee--eeecCCCccccceeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCC-----------eEEecccEe
Confidence 0000 000 0111111123444442 58889999999999988765554331 333344677
Q ss_pred EEEEEc--CCEEEEEeCCC---------cEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEE
Q 000602 312 WDCCLT--DSFIITAGEDC---------TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1398)
Q Consensus 312 ~~l~~s--~~~l~sgs~Dg---------~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~i 374 (1398)
..+.|+ |..|+.+|.|. .|.+|..-|+.+.+++.... .|+++.|-..|-.++.+ .|+.|.+
T Consensus 262 vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G~i~gtlkvpg~-~It~lsWEg~gLriA~A-vdsfiyf 333 (1189)
T KOG2041|consen 262 VGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYGHIVGTLKVPGS-CITGLSWEGTGLRIAIA-VDSFIYF 333 (1189)
T ss_pred ecceecCCCcEEEEccCcccccCccccceEEEeccchhheEEEecCCc-eeeeeEEcCCceEEEEE-ecceEEE
Confidence 888887 67888887552 57777777888888888777 59999887666555443 2444433
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.68 E-value=0.00029 Score=83.88 Aligned_cols=284 Identities=15% Similarity=0.143 Sum_probs=168.9
Q ss_pred CCcEEEEeC--CcCe--------eccceEEEEEEecCCCCCCCCEEEEEe-----CCcEEEEECCC--CeE--EEEEEee
Q 000602 3 KKDLSEWRL--DVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEA--GTL--IRPFQVF 63 (1398)
Q Consensus 3 D~tv~iWdl--~~~~--------h~~~Vtalafs~~pd~~~~g~lLaag~-----dg~I~Iwd~~t--g~~--l~~~~~~ 63 (1398)
.+.|.+|++ .+++ ....-..|+++ |+ +++|.+.. .+.|..|++.. +++ +.+...
T Consensus 12 ~~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~--~~----~~~LY~~~e~~~~~g~v~~~~i~~~~g~L~~~~~~~~- 84 (345)
T PF10282_consen 12 GGGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS--PD----GRRLYVVNEGSGDSGGVSSYRIDPDTGTLTLLNSVPS- 84 (345)
T ss_dssp STEEEEEEEETTTTEEEEEEEEEESSSECCEEE---TT----SSEEEEEETTSSTTTEEEEEEEETTTTEEEEEEEEEE-
T ss_pred CCcEEEEEEcCCCCCceEeeeecCCCCCceEEEE--eC----CCEEEEEEccccCCCCEEEEEECCCcceeEEeeeecc-
Confidence 356888887 4444 12335678899 88 78887765 26899998865 443 333332
Q ss_pred eCccEEEEEEeccccccCCCCccceeEEEEE--cCCeEEEEEecCCCCCCCCCCCcccccceeeeec----------ccC
Q 000602 64 HGIRLHGISCNFINCTEGSVSTRVTFEVALF--GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL----------PRL 131 (1398)
Q Consensus 64 ~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~--gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l----------~~h 131 (1398)
.+.....++++ |++ .+|.++ ++++|.++++..... + ......+ +.-
T Consensus 85 ~g~~p~~i~~~-------~~g----~~l~vany~~g~v~v~~l~~~g~----------l-~~~~~~~~~~g~g~~~~rq~ 142 (345)
T PF10282_consen 85 GGSSPCHIAVD-------PDG----RFLYVANYGGGSVSVFPLDDDGS----------L-GEVVQTVRHEGSGPNPDRQE 142 (345)
T ss_dssp SSSCEEEEEEC-------TTS----SEEEEEETTTTEEEEEEECTTSE----------E-EEEEEEEESEEEESSTTTTS
T ss_pred CCCCcEEEEEe-------cCC----CEEEEEEccCCeEEEEEccCCcc----------c-ceeeeecccCCCCCcccccc
Confidence 34456778888 888 344443 599999999986320 0 1111111 112
Q ss_pred CCcEEEEEEEeecCCCcEEEEEE-CCCeEEEEEcCCCe--E--EEEEccCCcceEEEEEeecCCCCCcEEEEE-ECCCeE
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSS--I--ILEVHSPERCLLYSMKLWGDNLEALRIASG-TIYNEI 205 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vWd~~~~~--~--~~~l~~~~~~~~~s~~~~~~s~d~~~lasg-s~dg~I 205 (1398)
.....++.|+| ++++|++.. ....|.+|++.... . ...+..+.++-...+.| ++++.+++.. ..+++|
T Consensus 143 ~~h~H~v~~~p---dg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~~~~~~~G~GPRh~~f---~pdg~~~Yv~~e~s~~v 216 (345)
T PF10282_consen 143 GPHPHQVVFSP---DGRFVYVPDLGADRVYVYDIDDDTGKLTPVDSIKVPPGSGPRHLAF---SPDGKYAYVVNELSNTV 216 (345)
T ss_dssp STCEEEEEE-T---TSSEEEEEETTTTEEEEEEE-TTS-TEEEEEEEECSTTSSEEEEEE----TTSSEEEEEETTTTEE
T ss_pred cccceeEEECC---CCCEEEEEecCCCEEEEEEEeCCCceEEEeeccccccCCCCcEEEE---cCCcCEEEEecCCCCcE
Confidence 34578999999 999887764 34589999997654 3 23444455555666776 6778777665 467889
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeC----c--cCCEEEEEEcCCCCEEEEEE-CCC
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVG----H--EGSIFRIEWSSCGSKLVSVS-DDR 278 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~g----H--~~~I~~vafspdg~~LaS~s-~Dg 278 (1398)
.++++.... ...+.+..+.. . ......|+++|||++|..+. ...
T Consensus 217 ~v~~~~~~~-----------------------------g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~ 267 (345)
T PF10282_consen 217 SVFDYDPSD-----------------------------GSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSN 267 (345)
T ss_dssp EEEEEETTT-----------------------------TEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTT
T ss_pred EEEeecccC-----------------------------CceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCC
Confidence 999887110 01122222221 1 22678899999999876654 567
Q ss_pred eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEe-CCCcEEEEcC---CCceEEEEecccCccEE
Q 000602 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG-EDCTCRVWGS---DGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 279 ~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs-~Dg~i~vWd~---~g~~l~~l~~h~~~~V~ 352 (1398)
+|.++++...... +..+. .........+.++++ +++|+++. .++.|.+|++ +|.....-.........
T Consensus 268 sI~vf~~d~~~g~----l~~~~--~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~~tG~l~~~~~~~~~~~p~ 341 (345)
T PF10282_consen 268 SISVFDLDPATGT----LTLVQ--TVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDPDTGKLTPVGSSVPIPSPV 341 (345)
T ss_dssp EEEEEEECTTTTT----EEEEE--EEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEEESSSEE
T ss_pred EEEEEEEecCCCc----eEEEE--EEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeCCCCcEEEecccccCCCCE
Confidence 8999999432110 33333 233334457888886 67777776 5578999987 34433332222222355
Q ss_pred EEEE
Q 000602 353 RCLY 356 (1398)
Q Consensus 353 sl~~ 356 (1398)
||.|
T Consensus 342 ci~f 345 (345)
T PF10282_consen 342 CIVF 345 (345)
T ss_dssp EEEE
T ss_pred EEeC
Confidence 6665
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.7e-06 Score=90.59 Aligned_cols=111 Identities=17% Similarity=0.270 Sum_probs=88.8
Q ss_pred EEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC
Q 000602 259 IFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 259 I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~ 335 (1398)
-.++.|++.+..++++-.+|.+.+-+...... +.+ +...+|..+.|.+.|+ |+++++||.|+.+..||+
T Consensus 124 ~lslD~~~~~~~i~vs~s~G~~~~v~~t~~~l------e~v--q~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~ 195 (339)
T KOG0280|consen 124 ALSLDISTSGTKIFVSDSRGSISGVYETEMVL------EKV--QTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDI 195 (339)
T ss_pred eeEEEeeccCceEEEEcCCCcEEEEecceeee------eec--ccccccceeeeeeecccCCCceEEecCCCceEEEEEe
Confidence 45678899999999999999998655544332 222 3778999999999998 789999999999999999
Q ss_pred --CCceEEE-EecccCccEEEEEEcC-CCCEEEEEEcCCcEEEEEcC
Q 000602 336 --DGKQLKM-IKEHIGRGIWRCLYDS-LSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 336 --~g~~l~~-l~~h~~~~V~sl~~sp-dg~~latgg~Dg~I~iwdl~ 378 (1398)
.++.+.. -+.|.. +|.+|.-+| .+.+|+||+.|-.|++||.+
T Consensus 196 R~p~~~i~~n~kvH~~-GV~SI~ss~~~~~~I~TGsYDe~i~~~DtR 241 (339)
T KOG0280|consen 196 RIPKTFIWHNSKVHTS-GVVSIYSSPPKPTYIATGSYDECIRVLDTR 241 (339)
T ss_pred cCCcceeeecceeeec-ceEEEecCCCCCceEEEeccccceeeeehh
Confidence 4555544 556766 699988765 57799999999999999995
|
|
| >TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL | Back alignment and domain information |
|---|
Probab=98.66 E-value=9.7e-06 Score=98.01 Aligned_cols=285 Identities=10% Similarity=0.046 Sum_probs=163.5
Q ss_pred CCCcEEEEeCCcCee------ccceE-EEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEE
Q 000602 2 GKKDLSEWRLDVGQY------LGEIS-ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~h------~~~Vt-alafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~f 73 (1398)
.++.+..+|..+|+. .+.+. ..+.. +..++++. ++.|..+|.++|+.+.+.... + .+.+.-.
T Consensus 73 ~~g~v~a~d~~tG~~~W~~~~~~~~~~~p~v~--------~~~v~v~~~~g~l~ald~~tG~~~W~~~~~-~-~~~~~p~ 142 (377)
T TIGR03300 73 ADGTVVALDAETGKRLWRVDLDERLSGGVGAD--------GGLVFVGTEKGEVIALDAEDGKELWRAKLS-S-EVLSPPL 142 (377)
T ss_pred CCCeEEEEEccCCcEeeeecCCCCcccceEEc--------CCEEEEEcCCCEEEEEECCCCcEeeeeccC-c-eeecCCE
Confidence 456677778777761 12221 22222 34555655 799999999999998776532 2 2221111
Q ss_pred eccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEE--EEeecCCCcEEE
Q 000602 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC--FLKVCNGNRSLA 151 (1398)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~--fsp~~~dg~~La 151 (1398)
. .++ .+++..+++.+..||.+++. .+.........+ .+. -+|.-.+ ..++
T Consensus 143 v-------~~~----~v~v~~~~g~l~a~d~~tG~---------------~~W~~~~~~~~~-~~~~~~sp~~~~-~~v~ 194 (377)
T TIGR03300 143 V-------ANG----LVVVRTNDGRLTALDAATGE---------------RLWTYSRVTPAL-TLRGSASPVIAD-GGVL 194 (377)
T ss_pred E-------ECC----EEEEECCCCeEEEEEcCCCc---------------eeeEEccCCCce-eecCCCCCEEEC-CEEE
Confidence 1 122 56666678999999997633 222221111111 000 0110003 3577
Q ss_pred EEECCCeEEEEEcCCCeEEEEEcc--CCcc-e---EEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCC
Q 000602 152 IGCSDNSIRVWDISNSSIILEVHS--PERC-L---LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1398)
Q Consensus 152 tgs~Dg~V~vWd~~~~~~~~~l~~--~~~~-~---~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1398)
.+..++.+..+|+.+|+.+.+... +... . .......+ ...+..++.++.+|.+..+|..+
T Consensus 195 ~~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~~~~~~~~~~p-~~~~~~vy~~~~~g~l~a~d~~t------------- 260 (377)
T TIGR03300 195 VGFAGGKLVALDLQTGQPLWEQRVALPKGRTELERLVDVDGDP-VVDGGQVYAVSYQGRVAALDLRS------------- 260 (377)
T ss_pred EECCCCEEEEEEccCCCEeeeeccccCCCCCchhhhhccCCcc-EEECCEEEEEEcCCEEEEEECCC-------------
Confidence 788889999999999987655431 1100 0 00000000 01245788888899999999872
Q ss_pred CCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEe
Q 000602 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLY 305 (1398)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~ 305 (1398)
++.+..... . ..... ..++..++.++.||.+..+|..+++.. . ...
T Consensus 261 --------------------G~~~W~~~~-~-~~~~p--~~~~~~vyv~~~~G~l~~~d~~tG~~~----W------~~~ 306 (377)
T TIGR03300 261 --------------------GRVLWKRDA-S-SYQGP--AVDDNRLYVTDADGVVVALDRRSGSEL----W------KND 306 (377)
T ss_pred --------------------CcEEEeecc-C-CccCc--eEeCCEEEEECCCCeEEEEECCCCcEE----E------ccc
Confidence 222222211 1 11111 124677888889999999999887641 0 110
Q ss_pred cC-CccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEE-EEEcCCCCEEEEEEcCCcEEEE
Q 000602 306 GH-NARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWR-CLYDSLSSLLVTAGFDSAIKVH 375 (1398)
Q Consensus 306 gh-~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~s-l~~spdg~~latgg~Dg~I~iw 375 (1398)
.. ..........++.|++++.+|.+.++|. +|+.+..++.+.. ++++ .++. + ..|+.++.||.|..+
T Consensus 307 ~~~~~~~ssp~i~g~~l~~~~~~G~l~~~d~~tG~~~~~~~~~~~-~~~~sp~~~-~-~~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 307 ELKYRQLTAPAVVGGYLVVGDFEGYLHWLSREDGSFVARLKTDGS-GIASPPVVV-G-DGLLVQTRDGDLYAF 376 (377)
T ss_pred cccCCccccCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcCCC-ccccCCEEE-C-CEEEEEeCCceEEEe
Confidence 10 1112223335789999999999999999 8999988886664 2333 2333 3 358888999998765
|
Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ. |
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=1.3e-07 Score=111.76 Aligned_cols=290 Identities=17% Similarity=0.205 Sum_probs=183.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCC-eEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG-TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg-~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
-.+++.++.++ |. |+-+|.++---+.|-|+... ..-+-+.....-.|-.+.|++. |.- +.-++.+
T Consensus 23 v~~~~~a~si~--p~----grdi~lAsr~gl~i~dld~p~~ppr~l~h~tpw~vad~qws~h-----~a~---~~wiVst 88 (1081)
T KOG0309|consen 23 VDGGFNAVSIN--PS----GRDIVLASRQGLYIIDLDDPFTPPRWLHHITPWQVADVQWSPH-----PAK---PYWIVST 88 (1081)
T ss_pred ecCcccceeec--cc----cchhhhhhhcCeEEEeccCCCCCceeeeccCcchhcceecccC-----CCC---ceeEEec
Confidence 45778899999 87 66666666444667777542 3222222212224667788843 221 3667777
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE-EEE
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEV 173 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~-~~l 173 (1398)
+...-.+|++.... .-.....+.||...|+++-|.| .....|++++.|-.|..||+++.... ...
T Consensus 89 s~qkaiiwnlA~ss------------~~aIef~lhghsraitd~n~~~--q~pdVlatcsvdt~vh~wd~rSp~~p~ys~ 154 (1081)
T KOG0309|consen 89 SNQKAIIWNLAKSS------------SNAIEFVLHGHSRAITDINFNP--QHPDVLATCSVDTYVHAWDMRSPHRPFYST 154 (1081)
T ss_pred CcchhhhhhhhcCC------------ccceEEEEecCccceeccccCC--CCCcceeeccccccceeeeccCCCcceeee
Confidence 78888999998543 1233446779999999999998 35678999999999999999875432 221
Q ss_pred ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~ 253 (1398)
. .-......++|- -.++. +.+.+..+.|.+||.+ +...++..++
T Consensus 155 ~-~w~s~asqVkwn--yk~p~-vlasshg~~i~vwd~r--------------------------------~gs~pl~s~K 198 (1081)
T KOG0309|consen 155 S-SWRSAASQVKWN--YKDPN-VLASSHGNDIFVWDLR--------------------------------KGSTPLCSLK 198 (1081)
T ss_pred e-cccccCceeeec--ccCcc-hhhhccCCceEEEecc--------------------------------CCCcceEEec
Confidence 1 111112223331 12333 3444456678888887 3567888999
Q ss_pred CccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEE------
Q 000602 254 GHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIIT------ 323 (1398)
Q Consensus 254 gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~s------ 323 (1398)
+|...|+.++|.. ....+.+++.||+|+.||....... .+ .......+||-..|.| .+++-
T Consensus 199 ~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e----~~-----~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n 269 (1081)
T KOG0309|consen 199 GHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTE----SK-----RTVTTNFPIWRGRYLPFGEGYCIMPMVGGN 269 (1081)
T ss_pred ccceeeehHHHhhhhhhhhcccCCCCceeeecccccccc----cc-----eeccccCcceeccccccCceeEeccccCCe
Confidence 9999999999986 3356889999999999999865431 11 2223344555554441 11111
Q ss_pred ----EeCCCcEEEEcC--CCceEEEEecccCccEEEEEE--------cCCC--CEEEEEEcCCcEEEEEcCC
Q 000602 324 ----AGEDCTCRVWGS--DGKQLKMIKEHIGRGIWRCLY--------DSLS--SLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 324 ----gs~Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~~--------spdg--~~latgg~Dg~I~iwdl~~ 379 (1398)
--.+.....|+. -.+++.+|.||... |....| ..+. -.|+|=+.|.++|+|.+..
T Consensus 270 ~v~~~~c~n~d~e~n~~~~~~pVh~F~GH~D~-V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 270 MVPQLRCENSDLEWNVFDLNTPVHTFVGHDDV-VLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred eeeeccccchhhhhccccCCcceeeecCcchH-HHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 112223334555 24678999999873 544333 2222 2799999999999999854
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.4e-05 Score=92.15 Aligned_cols=286 Identities=13% Similarity=0.187 Sum_probs=180.7
Q ss_pred EEEEeCCcCe-----eccceEEEEEEecCCCCCCCCEEEEEeC-C---------------cEEEEECCCCeEEEEEEeee
Q 000602 6 LSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSG-S---------------QVLLYDLEAGTLIRPFQVFH 64 (1398)
Q Consensus 6 v~iWdl~~~~-----h~~~Vtalafs~~pd~~~~g~lLaag~d-g---------------~I~Iwd~~tg~~l~~~~~~~ 64 (1398)
|.+|.-.... ....|.-+.|| |. ++||.+=+. + .+.|||+.+|.++..+.+..
T Consensus 55 V~~~~g~~~~~l~~~~~~~V~~~~fS--P~----~kYL~tw~~~pi~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~ 128 (561)
T COG5354 55 VECWGGPSKAKLVRFRHPDVKYLDFS--PN----EKYLVTWSREPIIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGIS 128 (561)
T ss_pred eEEccccchhheeeeecCCceecccC--cc----cceeeeeccCCccChhhccCCccccCceeEEeccCceeEeeccccC
Confidence 6667655443 34568899999 98 899988442 2 48999999999999988643
Q ss_pred Ccc--EE-EEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEE
Q 000602 65 GIR--LH-GISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1398)
Q Consensus 65 ~~~--V~-~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 141 (1398)
. + .+ -+.|+ -+. .++|---...+.|+++ +.... .-..+.++ ...|....|+
T Consensus 129 q-~~~~Wp~~k~s-------~~D----~y~ARvv~~sl~i~e~-t~n~~-----------~~p~~~lr--~~gi~dFsis 182 (561)
T COG5354 129 Q-PYLGWPVLKFS-------IDD----KYVARVVGSSLYIHEI-TDNIE-----------EHPFKNLR--PVGILDFSIS 182 (561)
T ss_pred C-cccccceeeee-------ecc----hhhhhhccCeEEEEec-CCccc-----------cCchhhcc--ccceeeEEec
Confidence 3 3 44 56677 442 4555555788999998 32211 11122222 3568889999
Q ss_pred eecCCCcEEEE-----EECCCeEEEEEcCCCeEEEEE--ccCCcceEEEEEeecCCCCCcEEEEE--E-------CC--C
Q 000602 142 KVCNGNRSLAI-----GCSDNSIRVWDISNSSIILEV--HSPERCLLYSMKLWGDNLEALRIASG--T-------IY--N 203 (1398)
Q Consensus 142 p~~~dg~~Lat-----gs~Dg~V~vWd~~~~~~~~~l--~~~~~~~~~s~~~~~~s~d~~~lasg--s-------~d--g 203 (1398)
|.. ++..||. ++.++++++|.+..+..+.+. ....++ .+.| .+.|.+++.- + .. .
T Consensus 183 P~~-n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~---qLkW---~~~g~~ll~l~~t~~ksnKsyfges 255 (561)
T COG5354 183 PEG-NHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGV---QLKW---QVLGKYLLVLVMTHTKSNKSYFGES 255 (561)
T ss_pred CCC-CCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeeccc---EEEE---ecCCceEEEEEEEeeecccceeccc
Confidence 832 4445554 467889999999876665432 222222 2222 2233333221 1 11 3
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE--CCCeEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS--DDRSAR 281 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s--~Dg~V~ 281 (1398)
++.++++. ...+....+-.++|...+|.|.++.+++++ .+-.+.
T Consensus 256 nLyl~~~~----------------------------------e~~i~V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s 301 (561)
T COG5354 256 NLYLLRIT----------------------------------ERSIPVEKDLKDPVHDFTWEPLSSRFAVISGYMPASVS 301 (561)
T ss_pred eEEEEeec----------------------------------ccccceeccccccceeeeecccCCceeEEeccccccee
Confidence 45555554 112222225679999999999988776544 788899
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcCCCce--EEEEecccCccEEEE
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGSDGKQ--LKMIKEHIGRGIWRC 354 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~~g~~--l~~l~~h~~~~V~sl 354 (1398)
++|++.. . ........=..+.|+ .++++.++-| |.+-+||..++. +..+.+.. ..-+
T Consensus 302 ~~~lr~N-l------------~~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~n---~s~~ 365 (561)
T COG5354 302 VFDLRGN-L------------RFYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGLN---TSYC 365 (561)
T ss_pred ecccccc-e------------EEecCCcccccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecCC---ceEe
Confidence 9999875 2 333333334455666 4788888876 779999995543 33555543 4567
Q ss_pred EEcCCCCEEEEEE------cCCcEEEEEcCCC
Q 000602 355 LYDSLSSLLVTAG------FDSAIKVHQFQAF 380 (1398)
Q Consensus 355 ~~spdg~~latgg------~Dg~I~iwdl~~~ 380 (1398)
.|+|++.++.+.- .|..|+|||+.+.
T Consensus 366 ~wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~ 397 (561)
T COG5354 366 DWSPDGQFYDTDTTSEKLRVDNSIKLWDVYGA 397 (561)
T ss_pred eccCCceEEEecCCCcccccCcceEEEEecCc
Confidence 8999999887754 3889999999654
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.57 E-value=3.1e-07 Score=118.03 Aligned_cols=189 Identities=14% Similarity=0.183 Sum_probs=139.8
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
+...|.++.-+ |. ..+.++|+ ||.|++|....++.+..++.....+|..+.|+ ..|+ .+-++-
T Consensus 2207 ~v~~v~r~~sH--p~----~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~-------~qGn---k~~i~d 2270 (2439)
T KOG1064|consen 2207 PVENVRRMTSH--PS----DPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFN-------HQGN---KFGIVD 2270 (2439)
T ss_pred ccCceeeecCC--CC----CceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhc-------ccCC---ceeeec
Confidence 34456666655 65 56777777 89999999999999888886555789999999 7774 666777
Q ss_pred cCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE---CCCeEEEEEcCCCe---
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC---SDNSIRVWDISNSS--- 168 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs---~Dg~V~vWd~~~~~--- 168 (1398)
|||.+.+|.... +.....+.|+....+++|.. ..+++++ .++.+.+||.--..
T Consensus 2271 ~dg~l~l~q~~p----------------k~~~s~qchnk~~~Df~Fi~-----s~~~tag~s~d~~n~~lwDtl~~~~~s 2329 (2439)
T KOG1064|consen 2271 GDGDLSLWQASP----------------KPYTSWQCHNKALSDFRFIG-----SLLATAGRSSDNRNVCLWDTLLPPMNS 2329 (2439)
T ss_pred cCCceeecccCC----------------cceeccccCCccccceeeee-----hhhhccccCCCCCcccchhcccCcccc
Confidence 899999999873 44556678999999999975 5677764 47789999975322
Q ss_pred EEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
.+. .+|.. ....+++ -|...+|++|+.+|.|++||++ ..+.
T Consensus 2330 ~v~--~~H~~-gaT~l~~---~P~~qllisggr~G~v~l~D~r---------------------------------qrql 2370 (2439)
T KOG1064|consen 2330 LVH--TCHDG-GATVLAY---APKHQLLISGGRKGEVCLFDIR---------------------------------QRQL 2370 (2439)
T ss_pred eee--eecCC-CceEEEE---cCcceEEEecCCcCcEEEeehH---------------------------------HHHH
Confidence 233 23322 2334444 5788999999999999999998 3333
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
++++.. +. ...++++++..|.++||++.....
T Consensus 2371 ~h~~~~---------~~-~~~~f~~~ss~g~ikIw~~s~~~l 2402 (2439)
T KOG1064|consen 2371 RHTFQA---------LD-TREYFVTGSSEGNIKIWRLSEFGL 2402 (2439)
T ss_pred HHHhhh---------hh-hhheeeccCcccceEEEEccccch
Confidence 433332 33 567899999999999999988655
|
|
| >KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.56 E-value=6.2e-05 Score=88.05 Aligned_cols=264 Identities=11% Similarity=0.123 Sum_probs=147.1
Q ss_pred EEEEeCCcEEEEECCCCeEEE-EEEee-eCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCC
Q 000602 38 LLAGSGSQVLLYDLEAGTLIR-PFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1398)
Q Consensus 38 Laag~dg~I~Iwd~~tg~~l~-~~~~~-~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~ 115 (1398)
++.-+.-.+.+|+........ .+... ...+....+++ ++| +++|.+.+..++|++....
T Consensus 5 ~aVRsSe~~~l~~~~~~~~~~~~f~~~~~~~~~~v~~~S-------~~G----~lfA~~~~~~v~i~~~~~~-------- 65 (566)
T KOG2315|consen 5 YAVRSSEGFYLFNGPGSKDAVTVFEQNKTSRPCNVFAYS-------NNG----RLFAYSDNQVVKVFEIATL-------- 65 (566)
T ss_pred EEEEccceeEEeccCCccccccccccCCCCCcceeEEEc-------CCC----cEEEEEcCCeEEEEEccCC--------
Confidence 333334457788765433222 22211 12235566777 888 7999999999999999862
Q ss_pred CcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE-----ECC-----CeEEEEEcCCCeEEEEEccCCcceEEEEE
Q 000602 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-----CSD-----NSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1398)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg-----s~D-----g~V~vWd~~~~~~~~~l~~~~~~~~~s~~ 185 (1398)
..+.+... ..+.++.|+| .|.+|.|= ..+ -.+++|+++++.....+...... -|...
T Consensus 66 -------~~~lt~~~--~~~~~L~fSP---~g~yL~T~e~~~i~~~~~~~~pn~~v~~vet~~~~s~~q~k~Q~-~W~~q 132 (566)
T KOG2315|consen 66 -------KVVLCVEL--KKTYDLLFSP---KGNYLLTWEPWAIYGPKNASNPNVLVYNVETGVQRSQIQKKMQN-GWVPQ 132 (566)
T ss_pred -------cEEEEecc--ceeeeeeecc---cccccccccccccccCCCCCCCceeeeeeccceehhheehhhhc-Ccccc
Confidence 12222221 2689999999 88888762 122 34779999886554444322221 14444
Q ss_pred eecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEc
Q 000602 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1398)
Q Consensus 186 ~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafs 265 (1398)
| +.|. .+++=-..+.+++|++.. .....+.+ |...|..+.+|
T Consensus 133 f---s~dE-sl~arlv~nev~f~~~~~--------------------------------f~~~~~kl--~~~~i~~f~lS 174 (566)
T KOG2315|consen 133 F---SIDE-SLAARLVSNEVQFYDLGS--------------------------------FKTIQHKL--SVSGITMLSLS 174 (566)
T ss_pred c---ccch-hhhhhhhcceEEEEecCC--------------------------------ccceeeee--eccceeeEEec
Confidence 4 3333 344434457889998871 11222222 56778888888
Q ss_pred CCC--CEEEE-----EECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--C-CEEEEEe--CC------
Q 000602 266 SCG--SKLVS-----VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--D-SFIITAG--ED------ 327 (1398)
Q Consensus 266 pdg--~~LaS-----~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~-~~l~sgs--~D------ 327 (1398)
|.+ ..+|+ .+.-+.||||........ ..+....++. ..-..+.|. + .+|+.++ -|
T Consensus 175 pgp~~~~vAvyvPe~kGaPa~vri~~~~~~~~~-----~~~a~ksFFk--adkvqm~WN~~gt~LLvLastdVDktn~SY 247 (566)
T KOG2315|consen 175 PGPEPPFVAVYVPEKKGAPASVRIYKYPEEGQH-----QPVANKSFFK--ADKVQMKWNKLGTALLVLASTDVDKTNASY 247 (566)
T ss_pred CCCCCceEEEEccCCCCCCcEEEEecccccccc-----chhhhccccc--cceeEEEeccCCceEEEEEEEeecCCCccc
Confidence 863 34443 345578999998733221 1111011111 111234444 1 2333322 23
Q ss_pred ---CcEEEEcCCCceEEEEecc-cCccEEEEEEcCCCCEEEE--EEcCCcEEEEEcCCC
Q 000602 328 ---CTCRVWGSDGKQLKMIKEH-IGRGIWRCLYDSLSSLLVT--AGFDSAIKVHQFQAF 380 (1398)
Q Consensus 328 ---g~i~vWd~~g~~l~~l~~h-~~~~V~sl~~spdg~~lat--gg~Dg~I~iwdl~~~ 380 (1398)
.++.+.+++|.... +... .+ +|.++.|+|+++-++. |-.-.++.|||+++.
T Consensus 248 YGEq~Lyll~t~g~s~~-V~L~k~G-PVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~ 304 (566)
T KOG2315|consen 248 YGEQTLYLLATQGESVS-VPLLKEG-PVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGK 304 (566)
T ss_pred cccceEEEEEecCceEE-EecCCCC-CceEEEECCCCCEEEEEEecccceEEEEcCCCC
Confidence 24666666543332 2223 45 7999999999975443 445678888888654
|
|
| >COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.54 E-value=2.2e-05 Score=90.52 Aligned_cols=273 Identities=12% Similarity=0.115 Sum_probs=169.4
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcC
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd 96 (1398)
.-|+..+.+| |. |.+|++..-..|.+|+-..+..+..+.. . .|.-+.|+ |.+ .+|.++..
T Consensus 32 ~~p~~~~~~S--P~----G~~l~~~~~~~V~~~~g~~~~~l~~~~~--~-~V~~~~fS-------P~~----kYL~tw~~ 91 (561)
T COG5354 32 NWPVAYVSES--PL----GTYLFSEHAAGVECWGGPSKAKLVRFRH--P-DVKYLDFS-------PNE----KYLVTWSR 91 (561)
T ss_pred Ccchhheeec--Cc----chheehhhccceEEccccchhheeeeec--C-CceecccC-------ccc----ceeeeecc
Confidence 3578999999 98 8999998888899999888776666652 2 58999999 887 68887763
Q ss_pred ----------------CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCc--EE-EEEEEeecCCCcEEEEEECCC
Q 000602 97 ----------------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW--VF-DVCFLKVCNGNRSLAIGCSDN 157 (1398)
Q Consensus 97 ----------------~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~--V~-~v~fsp~~~dg~~Latgs~Dg 157 (1398)
..+.+||+.. +..+..+.+-..+ .| -+.|+- +..++|=- ...
T Consensus 92 ~pi~~pe~e~sp~~~~n~~~vwd~~s---------------g~iv~sf~~~~q~~~~Wp~~k~s~---~D~y~ARv-v~~ 152 (561)
T COG5354 92 EPIIEPEIEISPFTSKNNVFVWDIAS---------------GMIVFSFNGISQPYLGWPVLKFSI---DDKYVARV-VGS 152 (561)
T ss_pred CCccChhhccCCccccCceeEEeccC---------------ceeEeeccccCCcccccceeeeee---cchhhhhh-ccC
Confidence 2478888875 3455555554444 55 677877 66655433 345
Q ss_pred eEEEEEcCCCeEE----EEEccCCcceEEEEEeecCCCCCcEEEE-----EECCCeEEEEEcccCCccccCCCCCCCCCC
Q 000602 158 SIRVWDISNSSII----LEVHSPERCLLYSMKLWGDNLEALRIAS-----GTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 158 ~V~vWd~~~~~~~----~~l~~~~~~~~~s~~~~~~s~d~~~las-----gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
.+.|+++ ++... ..+. +.+ +....+.+.. ++..||. ++..+++++|.+.
T Consensus 153 sl~i~e~-t~n~~~~p~~~lr-~~g--i~dFsisP~~-n~~~la~~tPEk~~kpa~~~i~sIp----------------- 210 (561)
T COG5354 153 SLYIHEI-TDNIEEHPFKNLR-PVG--ILDFSISPEG-NHDELAYWTPEKLNKPAMVRILSIP----------------- 210 (561)
T ss_pred eEEEEec-CCccccCchhhcc-ccc--eeeEEecCCC-CCceEEEEccccCCCCcEEEEEEcc-----------------
Confidence 7999997 33221 1111 111 2222221111 2222332 3455666666665
Q ss_pred CCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE-----------CCCeEEEEEcCCCcccCCCCce
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-----------DDRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s-----------~Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
....+.+-.-....=..+.|.+.|++|+.-- ....+.|+++..... .
T Consensus 211 ----------------~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfgesnLyl~~~~e~~i------~ 268 (561)
T COG5354 211 ----------------KNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFGESNLYLLRITERSI------P 268 (561)
T ss_pred ----------------CCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceeccceEEEEeeccccc------c
Confidence 2222222111222334677888887764321 123567777765433 1
Q ss_pred EeeeeEEecCCccEEEEEEcC--CE--EEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcC---C
Q 000602 298 EVGSSVLYGHNARVWDCCLTD--SF--IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD---S 370 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s~--~~--l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D---g 370 (1398)
....-.++|.+.+|.+ +. +++|-.+.++.++|+.+.....+..... ..+.|+|.+++++.+|.| |
T Consensus 269 -----V~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~Nl~~~~Pe~~r---NT~~fsp~~r~il~agF~nl~g 340 (561)
T COG5354 269 -----VEKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGNLRFYFPEQKR---NTIFFSPHERYILFAGFDNLQG 340 (561)
T ss_pred -----eeccccccceeeeecccCCceeEEecccccceeecccccceEEecCCccc---ccccccCcccEEEEecCCcccc
Confidence 3335678999999963 43 3444588899999998886555544333 568899999999998876 5
Q ss_pred cEEEEEcCCC
Q 000602 371 AIKVHQFQAF 380 (1398)
Q Consensus 371 ~I~iwdl~~~ 380 (1398)
.+-+||..++
T Consensus 341 ni~i~~~~~r 350 (561)
T COG5354 341 NIEIFDPAGR 350 (561)
T ss_pred ceEEeccCCc
Confidence 7888888543
|
|
| >PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3 | Back alignment and domain information |
|---|
Probab=98.54 E-value=0.00079 Score=80.14 Aligned_cols=274 Identities=12% Similarity=0.147 Sum_probs=166.1
Q ss_pred CcEEEEEC--CCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----CCeEEEEEecCCCCCCCCCCCc
Q 000602 44 SQVLLYDL--EAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPE 117 (1398)
Q Consensus 44 g~I~Iwd~--~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d~~V~vwdl~~~~~~~~~~~~~ 117 (1398)
+.|.+|++ +++++...-.........-++++ |+++ .+.++.. ++.|..|++....
T Consensus 13 ~gI~~~~~d~~~g~l~~~~~~~~~~~Ps~l~~~-------~~~~---~LY~~~e~~~~~g~v~~~~i~~~~--------- 73 (345)
T PF10282_consen 13 GGIYVFRFDEETGTLTLVQTVAEGENPSWLAVS-------PDGR---RLYVVNEGSGDSGGVSSYRIDPDT--------- 73 (345)
T ss_dssp TEEEEEEEETTTTEEEEEEEEEESSSECCEEE--------TTSS---EEEEEETTSSTTTEEEEEEEETTT---------
T ss_pred CcEEEEEEcCCCCCceEeeeecCCCCCceEEEE-------eCCC---EEEEEEccccCCCCEEEEEECCCc---------
Confidence 68988887 56665332222234456778888 8873 5555544 4689999998631
Q ss_pred ccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-CCCeEEEEEcCC-CeEEEE---Ec----c-----CCcceEEE
Q 000602 118 TCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISN-SSIILE---VH----S-----PERCLLYS 183 (1398)
Q Consensus 118 ~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vWd~~~-~~~~~~---l~----~-----~~~~~~~s 183 (1398)
. .++.+............++++| ++++|+++. .+|+|.++++.. +..... +. + ....-...
T Consensus 74 g--~L~~~~~~~~~g~~p~~i~~~~---~g~~l~vany~~g~v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~ 148 (345)
T PF10282_consen 74 G--TLTLLNSVPSGGSSPCHIAVDP---DGRFLYVANYGGGSVSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQ 148 (345)
T ss_dssp T--EEEEEEEEEESSSCEEEEEECT---TSSEEEEEETTTTEEEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEE
T ss_pred c--eeEEeeeeccCCCCcEEEEEec---CCCEEEEEEccCCeEEEEEccCCcccceeeeecccCCCCCccccccccccee
Confidence 0 2555555543445566789999 999988886 499999999986 444322 11 1 12334555
Q ss_pred EEeecCCCCCcEEEEEEC-CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe-CccCCEEE
Q 000602 184 MKLWGDNLEALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV-GHEGSIFR 261 (1398)
Q Consensus 184 ~~~~~~s~d~~~lasgs~-dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~-gH~~~I~~ 261 (1398)
+.+ +|++.++++... ...|.+|++..... .......+. ........
T Consensus 149 v~~---~pdg~~v~v~dlG~D~v~~~~~~~~~~-----------------------------~l~~~~~~~~~~G~GPRh 196 (345)
T PF10282_consen 149 VVF---SPDGRFVYVPDLGADRVYVYDIDDDTG-----------------------------KLTPVDSIKVPPGSGPRH 196 (345)
T ss_dssp EEE----TTSSEEEEEETTTTEEEEEEE-TTS------------------------------TEEEEEEEECSTTSSEEE
T ss_pred EEE---CCCCCEEEEEecCCCEEEEEEEeCCCc-----------------------------eEEEeeccccccCCCCcE
Confidence 655 788888877653 45799998872110 011122222 33456789
Q ss_pred EEEcCCCCEEEEE-ECCCeEEEEEcCCCcccCCCCceEeeee-EEe-cC--CccEEEEEEc--CCEEEEEe-CCCcEEEE
Q 000602 262 IEWSSCGSKLVSV-SDDRSARIWEVRAEYWKDSDSIEEVGSS-VLY-GH--NARVWDCCLT--DSFIITAG-EDCTCRVW 333 (1398)
Q Consensus 262 vafspdg~~LaS~-s~Dg~V~iWd~~~~~~~~~~~~~~i~~~-~~~-gh--~~~V~~l~~s--~~~l~sgs-~Dg~i~vW 333 (1398)
++|+|+++++... -.+++|.++++...... ++.+... .+. +. ......++++ +++|+++. .+.+|.+|
T Consensus 197 ~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~----~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf 272 (345)
T PF10282_consen 197 LAFSPDGKYAYVVNELSNTVSVFDYDPSDGS----LTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVF 272 (345)
T ss_dssp EEE-TTSSEEEEEETTTTEEEEEEEETTTTE----EEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEE
T ss_pred EEEcCCcCEEEEecCCCCcEEEEeecccCCc----eeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEE
Confidence 9999999987554 56788999999832210 2222110 111 11 1256778888 56666554 56789999
Q ss_pred cCC---Cce--EEEEecccCccEEEEEEcCCCCEEEEEE-cCCcEEEEEcC
Q 000602 334 GSD---GKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAG-FDSAIKVHQFQ 378 (1398)
Q Consensus 334 d~~---g~~--l~~l~~h~~~~V~sl~~spdg~~latgg-~Dg~I~iwdl~ 378 (1398)
+++ |+. +..+... +..-+.++++|+|++|+++. .++.|.+|+++
T Consensus 273 ~~d~~~g~l~~~~~~~~~-G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d 322 (345)
T PF10282_consen 273 DLDPATGTLTLVQTVPTG-GKFPRHFAFSPDGRYLYVANQDSNTVSVFDID 322 (345)
T ss_dssp EECTTTTTEEEEEEEEES-SSSEEEEEE-TTSSEEEEEETTTTEEEEEEEE
T ss_pred EEecCCCceEEEEEEeCC-CCCccEEEEeCCCCEEEEEecCCCeEEEEEEe
Confidence 982 332 2233322 33478999999999998877 46799999883
|
1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H. |
| >TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB | Back alignment and domain information |
|---|
Probab=98.51 E-value=1.4e-05 Score=97.97 Aligned_cols=222 Identities=13% Similarity=0.081 Sum_probs=131.9
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----CCeEEEEEecCCCCCCCCCCCccc
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----EKRVKLFELNFELSPNSQYQPETC 119 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----d~~V~vwdl~~~~~~~~~~~~~~~ 119 (1398)
..|.++|...+.. ..+..+.. .+...+|+ ||| ..|+... ...|.+|++.++.
T Consensus 170 ~~l~~~d~~g~~~-~~l~~~~~-~~~~p~~S-------pdg----~~la~~~~~~~~~~i~v~d~~~g~----------- 225 (417)
T TIGR02800 170 YELQVADYDGANP-QTITRSRE-PILSPAWS-------PDG----QKLAYVSFESGKPEIYVQDLATGQ----------- 225 (417)
T ss_pred ceEEEEcCCCCCC-EEeecCCC-ceecccCC-------CCC----CEEEEEEcCCCCcEEEEEECCCCC-----------
Confidence 3688888764433 44443333 58888999 998 4555433 2579999987532
Q ss_pred ccceeeeecccCCCcEEEEEEEeecCCCcEEEE-EECCC--eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEE
Q 000602 120 VNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAI-GCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 120 ~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Lat-gs~Dg--~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~l 196 (1398)
.+.+ ..+...+.+++|+| ||+.|+. .+.++ .|.+||+.++.... +.... .......| ++++..|
T Consensus 226 --~~~~---~~~~~~~~~~~~sp---Dg~~l~~~~~~~~~~~i~~~d~~~~~~~~-l~~~~-~~~~~~~~---s~dg~~l 292 (417)
T TIGR02800 226 --REKV---ASFPGMNGAPAFSP---DGSKLAVSLSKDGNPDIYVMDLDGKQLTR-LTNGP-GIDTEPSW---SPDGKSI 292 (417)
T ss_pred --EEEe---ecCCCCccceEECC---CCCEEEEEECCCCCccEEEEECCCCCEEE-CCCCC-CCCCCEEE---CCCCCEE
Confidence 2222 23445667789999 9987764 34343 58889998775432 22221 11223344 5788887
Q ss_pred EEEEC-CC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE
Q 000602 197 ASGTI-YN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 197 asgs~-dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS 273 (1398)
+..+. .+ .|.++++. .++ ...+..+...+..+.|+|++++++.
T Consensus 293 ~~~s~~~g~~~iy~~d~~---------------------------------~~~-~~~l~~~~~~~~~~~~spdg~~i~~ 338 (417)
T TIGR02800 293 AFTSDRGGSPQIYMMDAD---------------------------------GGE-VRRLTFRGGYNASPSWSPDGDLIAF 338 (417)
T ss_pred EEEECCCCCceEEEEECC---------------------------------CCC-EEEeecCCCCccCeEECCCCCEEEE
Confidence 76554 33 46666655 121 2334445566778899999999998
Q ss_pred EECCC---eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCC---cEEEEcCCCceEEEEec
Q 000602 274 VSDDR---SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDC---TCRVWGSDGKQLKMIKE 345 (1398)
Q Consensus 274 ~s~Dg---~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg---~i~vWd~~g~~l~~l~~ 345 (1398)
++.++ .|.+||+.++.. + .+... .......|+ ++.|+..+.++ .+.+.+.+++....+..
T Consensus 339 ~~~~~~~~~i~~~d~~~~~~------~-----~l~~~-~~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~~~~~~ 406 (417)
T TIGR02800 339 VHREGGGFNIAVMDLDGGGE------R-----VLTDT-GLDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFRARLPL 406 (417)
T ss_pred EEccCCceEEEEEeCCCCCe------E-----EccCC-CCCCCceECCCCCEEEEEEeCCCcEEEEEEECCCceeeECCC
Confidence 88776 788899877533 1 22211 122334565 46666665553 34555556666655554
Q ss_pred ccC
Q 000602 346 HIG 348 (1398)
Q Consensus 346 h~~ 348 (1398)
+.+
T Consensus 407 ~~g 409 (417)
T TIGR02800 407 GNG 409 (417)
T ss_pred CCC
Confidence 433
|
The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear. |
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00036 Score=79.70 Aligned_cols=224 Identities=12% Similarity=0.081 Sum_probs=141.4
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEE-EEeecCCCcEEEEEECCCeEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVC-FLKVCNGNRSLAIGCSDNSIR 160 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~-fsp~~~dg~~Latgs~Dg~V~ 160 (1398)
.|| ..++....|.|.+||.+++....-... +.............+..-+. |++ .+|++++..+. |.+.
T Consensus 276 sDG----krIvFq~~GdIylydP~td~lekldI~----lpl~rk~k~~k~~~pskyledfa~--~~Gd~ia~VSR-GkaF 344 (668)
T COG4946 276 SDG----KRIVFQNAGDIYLYDPETDSLEKLDIG----LPLDRKKKQPKFVNPSKYLEDFAV--VNGDYIALVSR-GKAF 344 (668)
T ss_pred CCC----cEEEEecCCcEEEeCCCcCcceeeecC----CccccccccccccCHHHhhhhhcc--CCCcEEEEEec-CcEE
Confidence 677 677777789999999987542111000 00000001111111222222 444 37888888874 6677
Q ss_pred EEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCC-eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeee
Q 000602 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN-EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 161 vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg-~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
|.+...+..++. ....+ +-|. .+ ..++.-++.|+.|| .+-|+|..
T Consensus 345 i~~~~~~~~iqv-~~~~~-VrY~-r~---~~~~e~~vigt~dgD~l~iyd~~---------------------------- 390 (668)
T COG4946 345 IMRPWDGYSIQV-GKKGG-VRYR-RI---QVDPEGDVIGTNDGDKLGIYDKD---------------------------- 390 (668)
T ss_pred EECCCCCeeEEc-CCCCc-eEEE-EE---ccCCcceEEeccCCceEEEEecC----------------------------
Confidence 777655544332 22222 2222 22 34566889999999 89999987
Q ss_pred cccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC-
Q 000602 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD- 318 (1398)
Q Consensus 240 ~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~- 318 (1398)
+..+.++.+.-+.|.++..+|+|++++.+.+...+.+.|+.++.. + ..-....+-|+...|++
T Consensus 391 ------~~e~kr~e~~lg~I~av~vs~dGK~~vvaNdr~el~vididngnv------~----~idkS~~~lItdf~~~~n 454 (668)
T COG4946 391 ------GGEVKRIEKDLGNIEAVKVSPDGKKVVVANDRFELWVIDIDNGNV------R----LIDKSEYGLITDFDWHPN 454 (668)
T ss_pred ------CceEEEeeCCccceEEEEEcCCCcEEEEEcCceEEEEEEecCCCe------e----EecccccceeEEEEEcCC
Confidence 334556777789999999999999999999999999999999875 2 12234456788889984
Q ss_pred -CEEEEEeCCC----cEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEE
Q 000602 319 -SFIITAGEDC----TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1398)
Q Consensus 319 -~~l~sgs~Dg----~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg 367 (1398)
.+++-+--+| .|+++|+.+..+.......+ .=.+-+|.|++++|.--+
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~~Kiy~vTT~ta-~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDGGKIYDVTTPTA-YDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCCCeEEEecCCcc-cccCcccCCCCcEEEEEe
Confidence 6777666554 69999996654444433333 135678999999876544
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.49 E-value=1.4e-05 Score=94.07 Aligned_cols=198 Identities=12% Similarity=0.158 Sum_probs=139.0
Q ss_pred CCEEEEEe-CCcEEEEECCCCeEEEEEEeee--CccEEEEEEeccccccCCC---------CccceeEEEEE--cCCeEE
Q 000602 35 LPFLLAGS-GSQVLLYDLEAGTLIRPFQVFH--GIRLHGISCNFINCTEGSV---------STRVTFEVALF--GEKRVK 100 (1398)
Q Consensus 35 g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~--~~~V~~i~fs~~~~~~~pd---------g~~~~~~la~~--gd~~V~ 100 (1398)
..|+|... ||.++|||...+++...|..-. .....+..|.-. ....|- +...+..+++- ..|.|.
T Consensus 5 ~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~-~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 5 LDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLS-ADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEE-eccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 56777776 7999999999998877765311 112333333210 000010 00012333443 378999
Q ss_pred EEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcce
Q 000602 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180 (1398)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~ 180 (1398)
+|++..++ ....-.-..|.+.|+++.++. +-..|.+++.|..+..|+...++.+....+... .
T Consensus 84 ~ys~~~g~-------------it~~~st~~h~~~v~~~~~~~---~~~ciyS~~ad~~v~~~~~~~~~~~~~~~~~~~-~ 146 (541)
T KOG4547|consen 84 LYSVAGGE-------------ITAKLSTDKHYGNVNEILDAQ---RLGCIYSVGADLKVVYILEKEKVIIRIWKEQKP-L 146 (541)
T ss_pred EEEecCCe-------------EEEEEecCCCCCcceeeeccc---ccCceEecCCceeEEEEecccceeeeeeccCCC-c
Confidence 99987532 222223347999999999987 888999999999999999999888877765433 2
Q ss_pred EEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEE
Q 000602 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF 260 (1398)
Q Consensus 181 ~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~ 260 (1398)
..+++. +||+..+++++ ++|++||+. +.+.+..|.||.++|.
T Consensus 147 ~~sl~i---s~D~~~l~~as--~~ik~~~~~---------------------------------~kevv~~ftgh~s~v~ 188 (541)
T KOG4547|consen 147 VSSLCI---SPDGKILLTAS--RQIKVLDIE---------------------------------TKEVVITFTGHGSPVR 188 (541)
T ss_pred cceEEE---cCCCCEEEecc--ceEEEEEcc---------------------------------CceEEEEecCCCcceE
Confidence 445555 68888998876 799999999 7888999999999999
Q ss_pred EEEEcCC-----CCEEEE-EECCCeEEEEEcCCC
Q 000602 261 RIEWSSC-----GSKLVS-VSDDRSARIWEVRAE 288 (1398)
Q Consensus 261 ~vafspd-----g~~LaS-~s~Dg~V~iWd~~~~ 288 (1398)
+++|..+ |.++.+ ...++.+.+|-+...
T Consensus 189 t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~~ 222 (541)
T KOG4547|consen 189 TLSFTTLIDGIIGKYVLSSAAAERGITVWVVEKE 222 (541)
T ss_pred EEEEEEeccccccceeeeccccccceeEEEEEcc
Confidence 9999876 566544 566778888887663
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.45 E-value=3.1e-05 Score=89.79 Aligned_cols=283 Identities=16% Similarity=0.213 Sum_probs=170.3
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEe------------CCcEEEEECCCCeEEEEEEeeeC-ccEEE-EEEeccccccCCCC
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGS------------GSQVLLYDLEAGTLIRPFQVFHG-IRLHG-ISCNFINCTEGSVS 84 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~------------dg~I~Iwd~~tg~~l~~~~~~~~-~~V~~-i~fs~~~~~~~pdg 84 (1398)
.|.-+.|| |. .+||++=+ +..++|||+.+|.+.+.|....+ ..++- +.|| -|+
T Consensus 251 ~Vq~idfS--P~----EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS-------~Dd 317 (698)
T KOG2314|consen 251 GVQFIDFS--PN----EKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWS-------HDD 317 (698)
T ss_pred CceeeecC--Cc----cceEEEecCCccccCcccCCCceEEEEEccccchhcceeccCCCccccceEEec-------cCC
Confidence 47889999 98 89998832 25799999999999999887443 22332 4567 675
Q ss_pred ccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-----CCCeE
Q 000602 85 TRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSI 159 (1398)
Q Consensus 85 ~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-----~Dg~V 159 (1398)
.++|.-...+|.||+... +.++-.-.-.-..|....|+| .+..||-=. .-.++
T Consensus 318 ----Ky~Arm~~~sisIyEtps---------------f~lld~Kslki~gIr~FswsP---~~~llAYwtpe~~~~parv 375 (698)
T KOG2314|consen 318 ----KYFARMTGNSISIYETPS---------------FMLLDKKSLKISGIRDFSWSP---TSNLLAYWTPETNNIPARV 375 (698)
T ss_pred ----ceeEEeccceEEEEecCc---------------eeeecccccCCccccCcccCC---CcceEEEEcccccCCcceE
Confidence 788888889999998763 222111111235688899999 766665321 12245
Q ss_pred EEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE----------ECCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000602 160 RVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG----------TIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1398)
Q Consensus 160 ~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg----------s~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1398)
.+-.+.+++.+++..-.. +....+++ ...|.+|+.- +....+-|+.++
T Consensus 376 tL~evPs~~~iRt~nlfn---VsDckLhW-Qk~gdyLcvkvdR~tK~~~~g~f~n~eIfrir------------------ 433 (698)
T KOG2314|consen 376 TLMEVPSKREIRTKNLFN---VSDCKLHW-QKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIR------------------ 433 (698)
T ss_pred EEEecCccceeeecccee---eeccEEEe-ccCCcEEEEEEEeeccccccceEeeEEEEEee------------------
Confidence 555565555554432211 11222222 2345555531 222233444443
Q ss_pred CCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCcccCCCCceEeeeeEEec
Q 000602 230 SSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYWKDSDSIEEVGSSVLYG 306 (1398)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~---Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~g 306 (1398)
...-++..+ .-...|...+|-|.|..+++-+. ..++.+|.+.+.... ...++ .+..
T Consensus 434 --------------eKdIpve~v-elke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~----~~lVk--~~dk 492 (698)
T KOG2314|consen 434 --------------EKDIPVEVV-ELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKK----PSLVK--ELDK 492 (698)
T ss_pred --------------ccCCCceee-ecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCc----hhhhh--hhcc
Confidence 112222222 24577889999999988766543 357888988753221 22111 2211
Q ss_pred CCccEEEEEEc--CCEEEEE---eCCCcEEEEcCCCceEE--EEecccCccEEEEEEcCCCCEEEEEEc------CCcEE
Q 000602 307 HNARVWDCCLT--DSFIITA---GEDCTCRVWGSDGKQLK--MIKEHIGRGIWRCLYDSLSSLLVTAGF------DSAIK 373 (1398)
Q Consensus 307 h~~~V~~l~~s--~~~l~sg---s~Dg~i~vWd~~g~~l~--~l~~h~~~~V~sl~~spdg~~latgg~------Dg~I~ 373 (1398)
.....+.|+ |++++.+ |..|.+..+|.+-..+. ....|.. .+-+.|.|.|+|++|++. |...+
T Consensus 493 --~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~~a~~k~~~~~eh~~--at~veWDPtGRYvvT~ss~wrhk~d~GYr 568 (698)
T KOG2314|consen 493 --KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTDYADLKDTASPEHFA--ATEVEWDPTGRYVVTSSSSWRHKVDNGYR 568 (698)
T ss_pred --cccceEEEcCCCcEEEEEEecccccceEEEecchhhhhhccCccccc--cccceECCCCCEEEEeeehhhhccccceE
Confidence 334567777 5666655 45788999998532222 1223443 678999999999999875 77789
Q ss_pred EEEcCCCCcc
Q 000602 374 VHQFQAFLPG 383 (1398)
Q Consensus 374 iwdl~~~~l~ 383 (1398)
||++.|.+++
T Consensus 569 i~tfqGrll~ 578 (698)
T KOG2314|consen 569 IFTFQGRLLK 578 (698)
T ss_pred EEEeecHHHH
Confidence 9999886654
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.0014 Score=73.70 Aligned_cols=268 Identities=11% Similarity=0.117 Sum_probs=160.1
Q ss_pred EEEEEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC---CCeEEEEE
Q 000602 90 EVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---DNSIRVWD 163 (1398)
Q Consensus 90 ~la~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~---Dg~V~vWd 163 (1398)
++.++. ++-|.+|++++... .+.... +-.+.+.++-++|+| ++++|.++-. +|.|.-|.
T Consensus 6 YiGtyT~~~s~gI~v~~ld~~~g-----------~l~~~~-~v~~~~nptyl~~~~---~~~~LY~v~~~~~~ggvaay~ 70 (346)
T COG2706 6 YIGTYTKRESQGIYVFNLDTKTG-----------ELSLLQ-LVAELGNPTYLAVNP---DQRHLYVVNEPGEEGGVAAYR 70 (346)
T ss_pred EEeeecccCCCceEEEEEeCccc-----------ccchhh-hccccCCCceEEECC---CCCEEEEEEecCCcCcEEEEE
Confidence 455554 67899999985431 122222 224567788999999 9999988754 57787777
Q ss_pred cCC--CeEE--EEEccCCcceEEEEEeecCCCCCcEEEEEE-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceee
Q 000602 164 ISN--SSII--LEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238 (1398)
Q Consensus 164 ~~~--~~~~--~~l~~~~~~~~~s~~~~~~s~d~~~lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~ 238 (1398)
++. |+.. .+........+ .+++ ++++.+|+++. ..|.|.++.++.. +
T Consensus 71 iD~~~G~Lt~ln~~~~~g~~p~-yvsv---d~~g~~vf~AnY~~g~v~v~p~~~d---G--------------------- 122 (346)
T COG2706 71 IDPDDGRLTFLNRQTLPGSPPC-YVSV---DEDGRFVFVANYHSGSVSVYPLQAD---G--------------------- 122 (346)
T ss_pred EcCCCCeEEEeeccccCCCCCe-EEEE---CCCCCEEEEEEccCceEEEEEcccC---C---------------------
Confidence 764 5442 22222222222 2333 78888888876 4588999988721 0
Q ss_pred ecccccceeEEEEEeCccCC----------EEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCcccCCCCceEeeeeEEecC
Q 000602 239 LQDQQHTAVNLFRLVGHEGS----------IFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1398)
Q Consensus 239 i~~~~~~~~~~~~l~gH~~~----------I~~vafspdg~~LaS~s~-Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh 307 (1398)
.......+..|.+. +....|.|++++|+++.- --.|.+|++..+... ...+ .....
T Consensus 123 ------~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~------~~~~-~~v~~ 189 (346)
T COG2706 123 ------SLQPVVQVVKHTGSGPHERQESPHVHSANFTPDGRYLVVPDLGTDRIFLYDLDDGKLT------PADP-AEVKP 189 (346)
T ss_pred ------ccccceeeeecCCCCCCccccCCccceeeeCCCCCEEEEeecCCceEEEEEcccCccc------cccc-cccCC
Confidence 00011111123333 778899999999988763 237899999977652 1111 22244
Q ss_pred CccEEEEEEcC--CEEEEE-eCCCcEEEEcCCC--ceEEEEecc--------cCccEEEEEEcCCCCEEEEEEc-CCcEE
Q 000602 308 NARVWDCCLTD--SFIITA-GEDCTCRVWGSDG--KQLKMIKEH--------IGRGIWRCLYDSLSSLLVTAGF-DSAIK 373 (1398)
Q Consensus 308 ~~~V~~l~~s~--~~l~sg-s~Dg~i~vWd~~g--~~l~~l~~h--------~~~~V~sl~~spdg~~latgg~-Dg~I~ 373 (1398)
......+.|++ ++.+.. --+++|.+|.++. ..+..++.+ .....-.|.++|||++|.+..+ ...|.
T Consensus 190 G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 190 GAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred CCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 55667899984 444444 4589999999933 333333322 1113556788999999988764 34777
Q ss_pred EEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc
Q 000602 374 VHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN 438 (1398)
Q Consensus 374 iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~ 438 (1398)
++.+... .+.+-. +..+..+...-|.+.|++.+++|++++
T Consensus 270 ~f~V~~~----------------~g~L~~---------~~~~~teg~~PR~F~i~~~g~~Liaa~ 309 (346)
T COG2706 270 VFSVDPD----------------GGKLEL---------VGITPTEGQFPRDFNINPSGRFLIAAN 309 (346)
T ss_pred EEEEcCC----------------CCEEEE---------EEEeccCCcCCccceeCCCCCEEEEEc
Confidence 7776311 111111 111222334468899999998887764
|
|
| >KOG4547 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.44 E-value=1.2e-05 Score=94.63 Aligned_cols=187 Identities=16% Similarity=0.220 Sum_probs=141.1
Q ss_pred CCcEEEEEECCCeEEEEEcCCCeEEEEEcc----CCcceEEEEEeec---------------CCCCCcEEEEEECCCeEE
Q 000602 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHS----PERCLLYSMKLWG---------------DNLEALRIASGTIYNEII 206 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~----~~~~~~~s~~~~~---------------~s~d~~~lasgs~dg~I~ 206 (1398)
...++|....||.+++||..+++....+.. ...|......+.. -+.+...++-|...|.|.
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~~lvlgt~~g~v~ 83 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTSMLVLGTPQGSVL 83 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccchHHHHhHHHHhhccCCceEEEeecCCccEE
Confidence 667899999999999999999887666542 1122211111111 123445677899999999
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE--eCccCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000602 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL--VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l--~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd 284 (1398)
+++.. .++....+ ..|.+.|.++.++.+-..|.|++.|+.+-.|+
T Consensus 84 ~ys~~---------------------------------~g~it~~~st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~ 130 (541)
T KOG4547|consen 84 LYSVA---------------------------------GGEITAKLSTDKHYGNVNEILDAQRLGCIYSVGADLKVVYIL 130 (541)
T ss_pred EEEec---------------------------------CCeEEEEEecCCCCCcceeeecccccCceEecCCceeEEEEe
Confidence 99987 44444444 47999999999999999999999999999999
Q ss_pred cCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCC--
Q 000602 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL-- 359 (1398)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spd-- 359 (1398)
...... + .....-...+.++++++ ..+++|+ +.|++||+ +++.+.+|.+|.+ +|.++.|..+
T Consensus 131 ~~~~~~-----~-----~~~~~~~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kevv~~ftgh~s-~v~t~~f~~~~~ 197 (541)
T KOG4547|consen 131 EKEKVI-----I-----RIWKEQKPLVSSLCISPDGKILLTAS--RQIKVLDIETKEVVITFTGHGS-PVRTLSFTTLID 197 (541)
T ss_pred ccccee-----e-----eeeccCCCccceEEEcCCCCEEEecc--ceEEEEEccCceEEEEecCCCc-ceEEEEEEEecc
Confidence 998765 2 25566667788888885 4777776 68999999 8889999999999 7999999766
Q ss_pred ---CCEEE-EEEcCCcEEEEEcC
Q 000602 360 ---SSLLV-TAGFDSAIKVHQFQ 378 (1398)
Q Consensus 360 ---g~~la-tgg~Dg~I~iwdl~ 378 (1398)
|.+++ +...+..+.+|-+.
T Consensus 198 g~~G~~vLssa~~~r~i~~w~v~ 220 (541)
T KOG4547|consen 198 GIIGKYVLSSAAAERGITVWVVE 220 (541)
T ss_pred ccccceeeeccccccceeEEEEE
Confidence 55554 45567778888774
|
|
| >COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=98.44 E-value=0.00051 Score=77.09 Aligned_cols=262 Identities=16% Similarity=0.144 Sum_probs=161.4
Q ss_pred CCcEEEEeCCcCe----------eccceEEEEEEecCCCCCCCCEEEEEe----CCcEEEEECCC--CeE--EEEEEeee
Q 000602 3 KKDLSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS----GSQVLLYDLEA--GTL--IRPFQVFH 64 (1398)
Q Consensus 3 D~tv~iWdl~~~~----------h~~~Vtalafs~~pd~~~~g~lLaag~----dg~I~Iwd~~t--g~~--l~~~~~~~ 64 (1398)
++-|.+|++.+.. ..+..+-|+|+ |+ ++.|.++. .+.|.-|.+.. |++ +..... .
T Consensus 15 s~gI~v~~ld~~~g~l~~~~~v~~~~nptyl~~~--~~----~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~~~-~ 87 (346)
T COG2706 15 SQGIYVFNLDTKTGELSLLQLVAELGNPTYLAVN--PD----QRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQTL-P 87 (346)
T ss_pred CCceEEEEEeCcccccchhhhccccCCCceEEEC--CC----CCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecccc-C
Confidence 4458999988543 56778999999 98 77887765 27788777764 654 222222 2
Q ss_pred CccEEEEEEeccccccCCCCccceeEEEE--EcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCc--------
Q 000602 65 GIRLHGISCNFINCTEGSVSTRVTFEVAL--FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-------- 134 (1398)
Q Consensus 65 ~~~V~~i~fs~~~~~~~pdg~~~~~~la~--~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-------- 134 (1398)
+.+-..++++ ++| +++.+ +..+.|.++-+..... +........|.+.
T Consensus 88 g~~p~yvsvd-------~~g----~~vf~AnY~~g~v~v~p~~~dG~------------l~~~v~~~~h~g~~p~~rQ~~ 144 (346)
T COG2706 88 GSPPCYVSVD-------EDG----RFVFVANYHSGSVSVYPLQADGS------------LQPVVQVVKHTGSGPHERQES 144 (346)
T ss_pred CCCCeEEEEC-------CCC----CEEEEEEccCceEEEEEcccCCc------------cccceeeeecCCCCCCccccC
Confidence 3344678888 887 45444 4589999999975331 1111111223333
Q ss_pred --EEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCCCeEEEE--EccCCcceEEEEEeecCCCCCcEEEEE-ECCCeEEEE
Q 000602 135 --VFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILE--VHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVW 208 (1398)
Q Consensus 135 --V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~~~~~~--l~~~~~~~~~s~~~~~~s~d~~~lasg-s~dg~I~vW 208 (1398)
+....|.| ++++|++..- --.|.+|++..|..... .....++-...+.| .|++++.+.- --+++|.+|
T Consensus 145 ~h~H~a~~tP---~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~~~v~~G~GPRHi~F---Hpn~k~aY~v~EL~stV~v~ 218 (346)
T COG2706 145 PHVHSANFTP---DGRYLVVPDLGTDRIFLYDLDDGKLTPADPAEVKPGAGPRHIVF---HPNGKYAYLVNELNSTVDVL 218 (346)
T ss_pred CccceeeeCC---CCCEEEEeecCCceEEEEEcccCccccccccccCCCCCcceEEE---cCCCcEEEEEeccCCEEEEE
Confidence 88899999 9998887642 33699999998765321 11223333445556 5678877664 468999999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEe------CccCCEEEEEEcCCCCEEEEEEC-CCeEE
Q 000602 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV------GHEGSIFRIEWSSCGSKLVSVSD-DRSAR 281 (1398)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~------gH~~~I~~vafspdg~~LaS~s~-Dg~V~ 281 (1398)
...... .....++++. .-..+.-+|..+|||++|..+.. ...|.
T Consensus 219 ~y~~~~-----------------------------g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~ 269 (346)
T COG2706 219 EYNPAV-----------------------------GKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIA 269 (346)
T ss_pred EEcCCC-----------------------------ceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEE
Confidence 988210 0112222221 12345677899999999977653 33777
Q ss_pred EEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC-CcEEEEcC
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED-CTCRVWGS 335 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D-g~i~vWd~ 335 (1398)
++.+...... +..+. ....+........++ +++|+.+.++ ..+.+|..
T Consensus 270 ~f~V~~~~g~----L~~~~--~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~ 320 (346)
T COG2706 270 VFSVDPDGGK----LELVG--ITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFER 320 (346)
T ss_pred EEEEcCCCCE----EEEEE--EeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEE
Confidence 7777654321 23222 222333334555554 6888888766 56888887
|
|
| >KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=4.3e-07 Score=107.37 Aligned_cols=227 Identities=15% Similarity=0.177 Sum_probs=151.7
Q ss_pred EEEEeCCcCe----------eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCC-eEEEEEEeeeCccEEEEEE
Q 000602 6 LSEWRLDVGQ----------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG-TLIRPFQVFHGIRLHGISC 73 (1398)
Q Consensus 6 v~iWdl~~~~----------h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg-~~l~~~~~~~~~~V~~i~f 73 (1398)
..+|++.... |...|+.+.|. |. ....||+++ |..+..||+.+. ..+..+..-+. +-..++|
T Consensus 93 aiiwnlA~ss~~aIef~lhghsraitd~n~~--~q---~pdVlatcsvdt~vh~wd~rSp~~p~ys~~~w~s-~asqVkw 166 (1081)
T KOG0309|consen 93 AIIWNLAKSSSNAIEFVLHGHSRAITDINFN--PQ---HPDVLATCSVDTYVHAWDMRSPHRPFYSTSSWRS-AASQVKW 166 (1081)
T ss_pred hhhhhhhcCCccceEEEEecCccceeccccC--CC---CCcceeeccccccceeeeccCCCcceeeeecccc-cCceeee
Confidence 4567766543 78889999998 65 245778887 899999999875 34444443333 5677888
Q ss_pred eccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEE
Q 000602 74 NFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latg 153 (1398)
+ + .++ ..+|.+-++.|++||+..+. .++..+++|...|+.++|+.+ ....+.+.
T Consensus 167 n----y--k~p----~vlasshg~~i~vwd~r~gs--------------~pl~s~K~~vs~vn~~~fnr~--~~s~~~s~ 220 (1081)
T KOG0309|consen 167 N----Y--KDP----NVLASSHGNDIFVWDLRKGS--------------TPLCSLKGHVSSVNSIDFNRF--KYSEIMSS 220 (1081)
T ss_pred c----c--cCc----chhhhccCCceEEEeccCCC--------------cceEEecccceeeehHHHhhh--hhhhhccc
Confidence 8 2 333 68888889999999998643 567788899999999999762 34568899
Q ss_pred ECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCC
Q 000602 154 CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1398)
Q Consensus 154 s~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1398)
+.|++|+.||.++...-..........++-.++.++. +|.++.---.++.+.+.+.+.
T Consensus 221 ~~d~tvkfw~y~kSt~e~~~~vtt~~piw~~r~~Pfg-~g~~~mp~~G~n~v~~~~c~n--------------------- 278 (1081)
T KOG0309|consen 221 SNDGTVKFWDYSKSTTESKRTVTTNFPIWRGRYLPFG-EGYCIMPMVGGNMVPQLRCEN--------------------- 278 (1081)
T ss_pred CCCCceeeecccccccccceeccccCcceeccccccC-ceeEeccccCCeeeeeccccc---------------------
Confidence 9999999999976443322223333445555554432 333322211122444444431
Q ss_pred cceeeecccccceeEEEEEeCccCCEEEEEEcCCC----------CEEEEEECCCeEEEEEcCCC
Q 000602 234 FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG----------SKLVSVSDDRSARIWEVRAE 288 (1398)
Q Consensus 234 ~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg----------~~LaS~s~Dg~V~iWd~~~~ 288 (1398)
.-..|..-...++++++.||++.|....|-..+ -.|+|-|.|.++|+|-+.+.
T Consensus 279 --~d~e~n~~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~~ 341 (1081)
T KOG0309|consen 279 --SDLEWNVFDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDSQ 341 (1081)
T ss_pred --hhhhhccccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccHH
Confidence 111122222567899999999998877664322 26999999999999998764
|
|
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=98.41 E-value=1.2e-06 Score=98.31 Aligned_cols=160 Identities=19% Similarity=0.233 Sum_probs=108.1
Q ss_pred EEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE----EEEEccCCcceEEEEEeecCCCCCcEEEEE---ECCCeEEE
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI----ILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIV 207 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~----~~~l~~~~~~~~~s~~~~~~s~d~~~lasg---s~dg~I~v 207 (1398)
++.+..+| ++++||++..+....++++..... +.....+.++. ++.+.. +...+..+ +....+.+
T Consensus 65 ~~~~~~s~---~~~llAv~~~~K~~~~f~~~~~~~~~kl~~~~~v~~~~~--ai~~~~---~~~sv~v~dkagD~~~~di 136 (390)
T KOG3914|consen 65 PALVLTSD---SGRLVAVATSSKQRAVFDYRENPKGAKLLDVSCVPKRPT--AISFIR---EDTSVLVADKAGDVYSFDI 136 (390)
T ss_pred ccccccCC---CceEEEEEeCCCceEEEEEecCCCcceeeeEeecccCcc--eeeeee---ccceEEEEeecCCceeeee
Confidence 44556666 889999998888877777754332 22222222221 222221 22222222 33344444
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
|... . .+...+-||-..+..|+|+||+++++++..|..||+-....
T Consensus 137 ~s~~---------------------------------~-~~~~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa 182 (390)
T KOG3914|consen 137 LSAD---------------------------------S-GRCEPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPA 182 (390)
T ss_pred eccc---------------------------------c-cCcchhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCc
Confidence 4443 2 22334569999999999999999999999999999987765
Q ss_pred CcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEEcC-CCceEEEEec
Q 000602 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~ 345 (1398)
... ++ ....||+.-|..++.. +..|+++|.|+++++||+ +|+.+.++..
T Consensus 183 ~f~-----Ie----sfclGH~eFVS~isl~~~~~LlS~sGD~tlr~Wd~~sgk~L~t~dl 233 (390)
T KOG3914|consen 183 TFV-----IE----SFCLGHKEFVSTISLTDNYLLLSGSGDKTLRLWDITSGKLLDTCDL 233 (390)
T ss_pred ccc-----hh----hhccccHhheeeeeeccCceeeecCCCCcEEEEecccCCcccccch
Confidence 433 22 3667999999999998 456799999999999999 8988866644
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.41 E-value=4.4e-05 Score=93.25 Aligned_cols=243 Identities=11% Similarity=0.021 Sum_probs=135.6
Q ss_pred cEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcC--CeEEEEEecCCCCCCCCCCCcccccc
Q 000602 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE--KRVKLFELNFELSPNSQYQPETCVNL 122 (1398)
Q Consensus 45 ~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd--~~V~vwdl~~~~~~~~~~~~~~~~~~ 122 (1398)
.|.+.|...+.. ..+.... ..+..-+|+ |||++.....++..+ ..|.+.++..+. .
T Consensus 166 ~l~~~d~dG~~~-~~lt~~~-~~~~sP~wS-------PDG~~~~~~y~S~~~g~~~I~~~~l~~g~-------------~ 223 (428)
T PRK01029 166 ELWSVDYDGQNL-RPLTQEH-SLSITPTWM-------HIGSGFPYLYVSYKLGVPKIFLGSLENPA-------------G 223 (428)
T ss_pred eEEEEcCCCCCc-eEcccCC-CCcccceEc-------cCCCceEEEEEEccCCCceEEEEECCCCC-------------c
Confidence 577778765543 3343222 245667899 998411111133333 356666776432 2
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-----CCeEEEEEcCCC--eEEEEEccCCcceEEEEEeecCCCCCcE
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-----DNSIRVWDISNS--SIILEVHSPERCLLYSMKLWGDNLEALR 195 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-----Dg~V~vWd~~~~--~~~~~l~~~~~~~~~s~~~~~~s~d~~~ 195 (1398)
+.+..+.+ .....+|+| ||+.||..+. +-.+.+|++..+ .....+............| +|||..
T Consensus 224 ~~lt~~~g---~~~~p~wSP---DG~~Laf~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~w---SPDG~~ 294 (428)
T PRK01029 224 KKILALQG---NQLMPTFSP---RKKLLAFISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSF---SPDGTR 294 (428)
T ss_pred eEeecCCC---CccceEECC---CCCEEEEEECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEE---CCCCCE
Confidence 33444443 345689999 9988876553 334555777653 1222222221122233444 789987
Q ss_pred EEEEE-CCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEE
Q 000602 196 IASGT-IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSV 274 (1398)
Q Consensus 196 lasgs-~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~ 274 (1398)
|+..+ .+|...+|.+.. ...+.....+..+...+....|+|||++|+..
T Consensus 295 Laf~s~~~g~~~ly~~~~------------------------------~~~g~~~~~lt~~~~~~~~p~wSPDG~~Laf~ 344 (428)
T PRK01029 295 LVFVSNKDGRPRIYIMQI------------------------------DPEGQSPRLLTKKYRNSSCPAWSPDGKKIAFC 344 (428)
T ss_pred EEEEECCCCCceEEEEEC------------------------------cccccceEEeccCCCCccceeECCCCCEEEEE
Confidence 77655 566666665430 00112233444555677889999999999876
Q ss_pred ECC---CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEE-EeC--CCcEEEEcCCCceEEEEecc
Q 000602 275 SDD---RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIIT-AGE--DCTCRVWGSDGKQLKMIKEH 346 (1398)
Q Consensus 275 s~D---g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~s-gs~--Dg~i~vWd~~g~~l~~l~~h 346 (1398)
+.+ ..|.+||+.+++. + .+......+....|+ ++.|+. +.. ...+.+||+++.....+...
T Consensus 345 ~~~~g~~~I~v~dl~~g~~------~-----~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~~~Lt~~ 413 (428)
T PRK01029 345 SVIKGVRQICVYDLATGRD------Y-----QLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKTRKIVIG 413 (428)
T ss_pred EcCCCCcEEEEEECCCCCe------E-----EccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEEeecC
Confidence 653 4689999988765 1 333223345667787 455553 333 34677888855444444434
Q ss_pred cCccEEEEEEcCCC
Q 000602 347 IGRGIWRCLYDSLS 360 (1398)
Q Consensus 347 ~~~~V~sl~~spdg 360 (1398)
.+ .+...+|+|-.
T Consensus 414 ~g-~~~~p~Ws~~~ 426 (428)
T PRK01029 414 SG-EKRFPSWGAFP 426 (428)
T ss_pred CC-cccCceecCCC
Confidence 44 35667777643
|
|
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=4.3e-05 Score=94.15 Aligned_cols=199 Identities=12% Similarity=0.009 Sum_probs=119.2
Q ss_pred ecccCCCcEEEEEEEeecCCCcEEEEEECC---CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEE-EEECC
Q 000602 127 SLPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIY 202 (1398)
Q Consensus 127 ~l~~h~~~V~~v~fsp~~~dg~~Latgs~D---g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~d 202 (1398)
.+..+...+....|+| ||+.|+..+.+ ..|.+||+.+++........ .......| +||+..|+ +...+
T Consensus 193 ~l~~~~~~~~~p~wSp---DG~~la~~s~~~~~~~l~~~~l~~g~~~~l~~~~--g~~~~~~~---SpDG~~la~~~~~~ 264 (430)
T PRK00178 193 TLLQSREPILSPRWSP---DGKRIAYVSFEQKRPRIFVQNLDTGRREQITNFE--GLNGAPAW---SPDGSKLAFVLSKD 264 (430)
T ss_pred EEecCCCceeeeeECC---CCCEEEEEEcCCCCCEEEEEECCCCCEEEccCCC--CCcCCeEE---CCCCCEEEEEEccC
Confidence 3445667899999999 99988776543 36899999887653322111 11223444 78888776 44445
Q ss_pred C--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CC-
Q 000602 203 N--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR- 278 (1398)
Q Consensus 203 g--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg- 278 (1398)
| .|.+||+. ++. ...+..+........|+|||+.|+..+. ++
T Consensus 265 g~~~Iy~~d~~---------------------------------~~~-~~~lt~~~~~~~~~~~spDg~~i~f~s~~~g~ 310 (430)
T PRK00178 265 GNPEIYVMDLA---------------------------------SRQ-LSRVTNHPAIDTEPFWGKDGRTLYFTSDRGGK 310 (430)
T ss_pred CCceEEEEECC---------------------------------CCC-eEEcccCCCCcCCeEECCCCCEEEEEECCCCC
Confidence 5 57777876 221 2334445556667899999998876664 33
Q ss_pred -eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeC-CC--cEEEEcCCCceEEEEecccCccEE
Q 000602 279 -SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DC--TCRVWGSDGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 279 -~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~-Dg--~i~vWd~~g~~l~~l~~h~~~~V~ 352 (1398)
.|.++++.+++. + .+...........|+ ++.|+..+. ++ .|.+||+.+.....+... . ...
T Consensus 311 ~~iy~~d~~~g~~------~-----~lt~~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~~lt~~-~-~~~ 377 (430)
T PRK00178 311 PQIYKVNVNGGRA------E-----RVTFVGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVRILTDT-S-LDE 377 (430)
T ss_pred ceEEEEECCCCCE------E-----EeecCCCCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEEEccCC-C-CCC
Confidence 566677766543 1 111111222345666 566665554 33 477889843334444322 1 123
Q ss_pred EEEEcCCCCEEEEEEcC-C--cEEEEEcCCC
Q 000602 353 RCLYDSLSSLLVTAGFD-S--AIKVHQFQAF 380 (1398)
Q Consensus 353 sl~~spdg~~latgg~D-g--~I~iwdl~~~ 380 (1398)
...|+|+|++|+..+.+ | .+.++++.+.
T Consensus 378 ~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 378 SPSVAPNGTMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred CceECCCCCEEEEEEecCCceEEEEEECCCC
Confidence 56899999988766643 3 4556666554
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.40 E-value=3.4e-05 Score=94.98 Aligned_cols=201 Identities=12% Similarity=0.054 Sum_probs=116.9
Q ss_pred cccCCCcEEEEEEEeecCCCcEEEEEECC---CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEE-EECCC
Q 000602 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSD---NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIYN 203 (1398)
Q Consensus 128 l~~h~~~V~~v~fsp~~~dg~~Latgs~D---g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~las-gs~dg 203 (1398)
+..+...+.+..|+| ||+.|+..+.+ ..|.+||+.+++........ . ......| +||+..|+. .+.++
T Consensus 213 l~~~~~~~~~p~wSP---DG~~La~~s~~~g~~~L~~~dl~tg~~~~lt~~~-g-~~~~~~w---SPDG~~La~~~~~~g 284 (448)
T PRK04792 213 LLRSPEPLMSPAWSP---DGRKLAYVSFENRKAEIFVQDIYTQVREKVTSFP-G-INGAPRF---SPDGKKLALVLSKDG 284 (448)
T ss_pred eecCCCcccCceECC---CCCEEEEEEecCCCcEEEEEECCCCCeEEecCCC-C-CcCCeeE---CCCCCEEEEEEeCCC
Confidence 344567889999999 99988876543 25888999887653221111 1 1223444 788887764 56666
Q ss_pred e--EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CC--
Q 000602 204 E--IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR-- 278 (1398)
Q Consensus 204 ~--I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg-- 278 (1398)
. |.++|+. +++ ...+..+.......+|+|||++|+..+. ++
T Consensus 285 ~~~Iy~~dl~---------------------------------tg~-~~~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~ 330 (448)
T PRK04792 285 QPEIYVVDIA---------------------------------TKA-LTRITRHRAIDTEPSWHPDGKSLIFTSERGGKP 330 (448)
T ss_pred CeEEEEEECC---------------------------------CCC-eEECccCCCCccceEECCCCCEEEEEECCCCCc
Confidence 5 6666665 222 2334445556678899999998876654 34
Q ss_pred eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeC-CCc--EEEEcCCCceEEEEecccCccEEE
Q 000602 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCT--CRVWGSDGKQLKMIKEHIGRGIWR 353 (1398)
Q Consensus 279 ~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~-Dg~--i~vWd~~g~~l~~l~~h~~~~V~s 353 (1398)
.|.++|+.+++. + .+..+.......+|+ +++|+..+. ++. |.++|+.+.....+..... ...
T Consensus 331 ~Iy~~dl~~g~~------~-----~Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt~~~~--d~~ 397 (448)
T PRK04792 331 QIYRVNLASGKV------S-----RLTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLTSTRL--DES 397 (448)
T ss_pred eEEEEECCCCCE------E-----EEecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEccCCCC--CCC
Confidence 455566665543 1 221122223345676 466655544 444 4456764433444433221 234
Q ss_pred EEEcCCCCEEEEEEc-CCc--EEEEEcCCCCcc
Q 000602 354 CLYDSLSSLLVTAGF-DSA--IKVHQFQAFLPG 383 (1398)
Q Consensus 354 l~~spdg~~latgg~-Dg~--I~iwdl~~~~l~ 383 (1398)
..|+|+|+.|+.... +|. +.+++.++...+
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~~G~~~~ 430 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSIDGRFKA 430 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEECCCCceE
Confidence 579999998766554 343 566676655433
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-06 Score=88.60 Aligned_cols=273 Identities=15% Similarity=0.185 Sum_probs=159.8
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCe-----EEEEEEeeeC-----------ccEEEEEEecccc
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGT-----LIRPFQVFHG-----------IRLHGISCNFINC 78 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~-----~l~~~~~~~~-----------~~V~~i~fs~~~~ 78 (1398)
-..-|++|.|. .. |.||++|. +|.|.+|.-+... ....|+.|+. .+|..|.|..
T Consensus 25 ead~ItaVefd--~t----g~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~--- 95 (460)
T COG5170 25 EADKITAVEFD--ET----GLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFD--- 95 (460)
T ss_pred ccceeeEEEec--cc----cceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeec---
Confidence 34569999999 55 88999999 7999999865432 1223444331 4677888761
Q ss_pred ccCCCCccceeEEEEEcCCeEEEEEecCCCCC--------CCCCCC--------------c-----ccccceeeeec-cc
Q 000602 79 TEGSVSTRVTFEVALFGEKRVKLFELNFELSP--------NSQYQP--------------E-----TCVNLSLVQSL-PR 130 (1398)
Q Consensus 79 ~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~--------~~~~~~--------------~-----~~~~~~~~~~l-~~ 130 (1398)
+.+ ...+|++..|++|++|.+.....+ ...-.| . .-+..++.+.. ..
T Consensus 96 ---~t~--r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNa 170 (460)
T COG5170 96 ---DTG--RNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANA 170 (460)
T ss_pred ---CCC--cceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccc
Confidence 333 236788888999999998643100 000000 0 00011112222 46
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeE---EEEEccCC----cceEEEEEeecCCCCCcEEEEEECCC
Q 000602 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI---ILEVHSPE----RCLLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 131 h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~---~~~l~~~~----~~~~~s~~~~~~s~d~~~lasgs~dg 203 (1398)
|.-.|+++.|+. |...++++ .|-.|.+|+++-... +..++.+. ..++.+..|++. ....+.-.+..|
T Consensus 171 H~yhiNSiS~Ns---D~et~lSa-DdLrINLWnl~i~D~sFnIVDiKP~nmeeLteVItSaeFhp~--~cn~fmYSsSkG 244 (460)
T COG5170 171 HPYHINSISFNS---DKETLLSA-DDLRINLWNLEIIDGSFNIVDIKPHNMEELTEVITSAEFHPE--MCNVFMYSSSKG 244 (460)
T ss_pred ceeEeeeeeecC---chheeeec-cceeeeeccccccCCceEEEeccCccHHHHHHHHhhcccCHh--HcceEEEecCCC
Confidence 778899999998 88888766 578899999864321 22333222 123455566432 344566677889
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iW 283 (1398)
+|++-|++... +++..-+++.....+....-+.+-...|..+.|+++|+++++-+.- +|+||
T Consensus 245 ~Ikl~DlRq~a-----------------lcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdyl-tvkiw 306 (460)
T COG5170 245 EIKLNDLRQSA-----------------LCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDYL-TVKIW 306 (460)
T ss_pred cEEehhhhhhh-----------------hccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEeccc-eEEEE
Confidence 99999998211 1111111111110111122234456788899999999999887654 89999
Q ss_pred EcCCCcccCCCCceEeeeeEEecCC------------ccE---EEEEEc--CCEEEEEeCCCcEEEEcC
Q 000602 284 EVRAEYWKDSDSIEEVGSSVLYGHN------------ARV---WDCCLT--DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~gh~------------~~V---~~l~~s--~~~l~sgs~Dg~i~vWd~ 335 (1398)
|....+.+ +. +..-|. ..| ..+.|+ ...+++|+.....-+|-.
T Consensus 307 Dvnm~k~p----ik-----Ti~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~ 366 (460)
T COG5170 307 DVNMAKNP----IK-----TIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPT 366 (460)
T ss_pred ecccccCC----ce-----eechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeecc
Confidence 99876542 22 221221 122 234555 367778877777766654
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.37 E-value=3.5e-06 Score=89.14 Aligned_cols=75 Identities=19% Similarity=0.378 Sum_probs=61.6
Q ss_pred CEEEEEEcCCC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEE
Q 000602 258 SIFRIEWSSCG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 258 ~I~~vafspdg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vW 333 (1398)
.|.+++-+|.. ..+++|++||.+.+||.+....+ . ..+..|.++||.+.|+ |..|+++++||.+.-|
T Consensus 181 ~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p----~-----S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~w 251 (319)
T KOG4714|consen 181 AVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMP----V-----SLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHW 251 (319)
T ss_pred cchhhhCCcccccEEEEecCCCeEEEEEcccccch----H-----HHHHHhhhhhhheeccCCCchheeEecCCCcEEEE
Confidence 38888888854 56778899999999999986441 1 2677899999999998 5799999999999999
Q ss_pred cCCCceEE
Q 000602 334 GSDGKQLK 341 (1398)
Q Consensus 334 d~~g~~l~ 341 (1398)
|.+++.+.
T Consensus 252 das~~~l~ 259 (319)
T KOG4714|consen 252 DASTTFLS 259 (319)
T ss_pred cCCCceEE
Confidence 99765443
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00025 Score=86.13 Aligned_cols=270 Identities=9% Similarity=-0.020 Sum_probs=146.5
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEE----EEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCC
Q 000602 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGI----SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN 111 (1398)
Q Consensus 37 lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i----~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~ 111 (1398)
.|.++. ++.|.-+|.++|+.+-+........+..- .++.... ..++ .+++...++.+..+|.+++.
T Consensus 71 ~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~~~~~~~~~~--v~~~----~v~v~~~~g~l~ald~~tG~--- 141 (394)
T PRK11138 71 KVYAADRAGLVKALDADTGKEIWSVDLSEKDGWFSKNKSALLSGGVT--VAGG----KVYIGSEKGQVYALNAEDGE--- 141 (394)
T ss_pred EEEEECCCCeEEEEECCCCcEeeEEcCCCcccccccccccccccccE--EECC----EEEEEcCCCEEEEEECCCCC---
Confidence 444444 78999999999998877654221111110 0110000 0122 55665668899999987643
Q ss_pred CCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceE----EEEEee
Q 000602 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLL----YSMKLW 187 (1398)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~----~s~~~~ 187 (1398)
.+...... +.+.+--.. .+..++.+..++.+.-+|..+|+.+.+......... .+...
T Consensus 142 ------------~~W~~~~~-~~~~ssP~v----~~~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~~~~~~~~sP~v- 203 (394)
T PRK11138 142 ------------VAWQTKVA-GEALSRPVV----SDGLVLVHTSNGMLQALNESDGAVKWTVNLDVPSLTLRGESAPAT- 203 (394)
T ss_pred ------------CcccccCC-CceecCCEE----ECCEEEEECCCCEEEEEEccCCCEeeeecCCCCcccccCCCCCEE-
Confidence 22211111 122221111 234566677899999999999999877754321100 01111
Q ss_pred cCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCcc-CCEEEEEEcC
Q 000602 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSS 266 (1398)
Q Consensus 188 ~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~-~~I~~vafsp 266 (1398)
.+..++.++.+|.+...|..+++.. |..+. ..+. ..+. .....+..+|
T Consensus 204 ----~~~~v~~~~~~g~v~a~d~~~G~~~-----------------------W~~~~-~~~~---~~~~~~~~~~~~~sP 252 (394)
T PRK11138 204 ----AFGGAIVGGDNGRVSAVLMEQGQLI-----------------------WQQRI-SQPT---GATEIDRLVDVDTTP 252 (394)
T ss_pred ----ECCEEEEEcCCCEEEEEEccCChhh-----------------------heecc-ccCC---CccchhcccccCCCc
Confidence 1235667778899988888743321 11000 0000 0000 0000111122
Q ss_pred --CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEE
Q 000602 267 --CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1398)
Q Consensus 267 --dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l 343 (1398)
.+..++.++.++.+...|..+++.. .+ . .......+...++.|+.++.+|.+..+|. +|+.+...
T Consensus 253 ~v~~~~vy~~~~~g~l~ald~~tG~~~----W~-----~---~~~~~~~~~~~~~~vy~~~~~g~l~ald~~tG~~~W~~ 320 (394)
T PRK11138 253 VVVGGVVYALAYNGNLVALDLRSGQIV----WK-----R---EYGSVNDFAVDGGRIYLVDQNDRVYALDTRGGVELWSQ 320 (394)
T ss_pred EEECCEEEEEEcCCeEEEEECCCCCEE----Ee-----e---cCCCccCcEEECCEEEEEcCCCeEEEEECCCCcEEEcc
Confidence 2456777778899999999887651 11 1 11111233455788888999999999999 78766544
Q ss_pred ecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 344 KEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 344 ~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
.........+..+ .+.+|+.++.||.+.+.|..
T Consensus 321 ~~~~~~~~~sp~v--~~g~l~v~~~~G~l~~ld~~ 353 (394)
T PRK11138 321 SDLLHRLLTAPVL--YNGYLVVGDSEGYLHWINRE 353 (394)
T ss_pred cccCCCcccCCEE--ECCEEEEEeCCCEEEEEECC
Confidence 3221211222233 24578888999999999983
|
|
| >TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0018 Score=75.59 Aligned_cols=270 Identities=8% Similarity=0.007 Sum_probs=150.7
Q ss_pred CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC----------CCeEEEEEcccCCccccCCCCCCCC
Q 000602 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI----------YNEIIVWKVDWEHVAPLLNSPEGNH 226 (1398)
Q Consensus 157 g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~----------dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1398)
++|.+.|..+++.+.++....+... + + ++|+..|+.+.. +..|.+||..
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~~--~-~---spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~--------------- 85 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPNP--V-V---ASDGSFFAHASTVYSRIARGKRTDYVEVIDPQ--------------- 85 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCce--e-E---CCCCCEEEEEeccccccccCCCCCEEEEEECc---------------
Confidence 8999999999999988875544332 1 2 788888877655 7899999998
Q ss_pred CCCCCCCcceeeecccccceeEEEEEeCc-------cCCEEEEEEcCCCCEEEEEE-C-CCeEEEEEcCCCcccCCCCce
Q 000602 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGH-------EGSIFRIEWSSCGSKLVSVS-D-DRSARIWEVRAEYWKDSDSIE 297 (1398)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH-------~~~I~~vafspdg~~LaS~s-~-Dg~V~iWd~~~~~~~~~~~~~ 297 (1398)
+.+.+..+.-- ......++++|||++|.... . +..|.+.|+.+++. +.
T Consensus 86 ------------------t~~~~~~i~~p~~p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kv-----v~ 142 (352)
T TIGR02658 86 ------------------THLPIADIELPEGPRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAF-----VR 142 (352)
T ss_pred ------------------cCcEEeEEccCCCchhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcE-----EE
Confidence 44455444321 12334688999999988665 3 78999999999876 33
Q ss_pred EeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC--CCceEE-EEec-cc-CccEE-EEEEcC-CCCEEEEEEcCC
Q 000602 298 EVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLK-MIKE-HI-GRGIW-RCLYDS-LSSLLVTAGFDS 370 (1398)
Q Consensus 298 ~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~--~g~~l~-~l~~-h~-~~~V~-sl~~sp-dg~~latgg~Dg 370 (1398)
++. - .....-...++..+..-+.||......+ +|+... ...- +. ..++. .-.|.+ +|+++..... |
T Consensus 143 ei~-----v-p~~~~vy~t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G 215 (352)
T TIGR02658 143 MMD-----V-PDCYHIFPTANDTFFMHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-G 215 (352)
T ss_pred EEe-----C-CCCcEEEEecCCccEEEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-C
Confidence 332 1 1122222223333334456666666544 343211 1110 11 00000 013455 7877766665 9
Q ss_pred cEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCe-EEEEEcC----------
Q 000602 371 AIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDT-LYIATNH---------- 439 (1398)
Q Consensus 371 ~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~-llv~t~~---------- 439 (1398)
+|.+.|+.+....... .+.. ......-..| ..+...-++++++++ +++....
T Consensus 216 ~V~~id~~~~~~~~~~-------------~~~~--~~~~~~~~~w--rP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~ 278 (352)
T TIGR02658 216 KIFQIDLSSGDAKFLP-------------AIEA--FTEAEKADGW--RPGGWQQVAYHRARDRIYLLADQRAKWTHKTAS 278 (352)
T ss_pred eEEEEecCCCcceecc-------------eeee--cccccccccc--CCCcceeEEEcCCCCEEEEEecCCccccccCCC
Confidence 9999998543222111 0000 0000000001 123344589998874 4443321
Q ss_pred CcEEEEEeecCCCceeEEEEeecCCccEEEEeccCCCCCCcCCCCc-EEEEEe-CCCCEEEEEEcCCccc
Q 000602 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD-WVALGD-GKGNMTIVRVVGDVHT 507 (1398)
Q Consensus 440 g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~-~la~gs-~dG~I~Iwd~~~~~~~ 507 (1398)
+.+. +.+..+. +.+.....+.....+.+ .++++ +|++.+ .++.|.++|..+++.+
T Consensus 279 ~~V~---ViD~~t~--kvi~~i~vG~~~~~iav--------S~Dgkp~lyvtn~~s~~VsViD~~t~k~i 335 (352)
T TIGR02658 279 RFLF---VVDAKTG--KRLRKIELGHEIDSINV--------SQDAKPLLYALSTGDKTLYIFDAETGKEL 335 (352)
T ss_pred CEEE---EEECCCC--eEEEEEeCCCceeeEEE--------CCCCCeEEEEeCCCCCcEEEEECcCCeEE
Confidence 2333 3333332 23444444556666666 35566 777666 5778999999887644
|
This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome. |
| >PRK00178 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.31 E-value=7.8e-05 Score=91.82 Aligned_cols=205 Identities=9% Similarity=0.045 Sum_probs=122.3
Q ss_pred cEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEe--C--CcEEEEECCCCeEEEEEEeeeCccEEEEEEe
Q 000602 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 5 tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~--d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs 74 (1398)
.+.++|.+.+. +..++...+|+ || |+.|+..+ + ..|.+||+.+++... +....+ .+...+|+
T Consensus 180 ~l~~~d~~g~~~~~l~~~~~~~~~p~wS--pD----G~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g-~~~~~~~S 251 (430)
T PRK00178 180 TLQRSDYDGARAVTLLQSREPILSPRWS--PD----GKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEG-LNGAPAWS 251 (430)
T ss_pred EEEEECCCCCCceEEecCCCceeeeeEC--CC----CCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCC-CcCCeEEC
Confidence 36677776542 45678899999 99 78777654 2 579999999886533 222233 35568899
Q ss_pred ccccccCCCCccceeEEE-EEc-CC--eEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEE
Q 000602 75 FINCTEGSVSTRVTFEVA-LFG-EK--RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSL 150 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la-~~g-d~--~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~L 150 (1398)
||| ..|+ +.. ++ .|.+||+++.. ...+..+........|+| ||+.|
T Consensus 252 -------pDG----~~la~~~~~~g~~~Iy~~d~~~~~----------------~~~lt~~~~~~~~~~~sp---Dg~~i 301 (430)
T PRK00178 252 -------PDG----SKLAFVLSKDGNPEIYVMDLASRQ----------------LSRVTNHPAIDTEPFWGK---DGRTL 301 (430)
T ss_pred -------CCC----CEEEEEEccCCCceEEEEECCCCC----------------eEEcccCCCCcCCeEECC---CCCEE
Confidence 998 3444 332 33 57777876522 122334445566788999 99887
Q ss_pred EEEEC-C--CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC-C--eEEEEEcccCCccccCCCCCC
Q 000602 151 AIGCS-D--NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-N--EIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 151 atgs~-D--g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d-g--~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
+..+. + ..|.++|+.+++......... ......+ +|++..|+..... + .|.+||+.+
T Consensus 302 ~f~s~~~g~~~iy~~d~~~g~~~~lt~~~~--~~~~~~~---Spdg~~i~~~~~~~~~~~l~~~dl~t------------ 364 (430)
T PRK00178 302 YFTSDRGGKPQIYKVNVNGGRAERVTFVGN--YNARPRL---SADGKTLVMVHRQDGNFHVAAQDLQR------------ 364 (430)
T ss_pred EEEECCCCCceEEEEECCCCCEEEeecCCC--CccceEE---CCCCCEEEEEEccCCceEEEEEECCC------------
Confidence 76654 3 357777887776432221111 1122333 6888888776543 3 477777762
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-C--eEEEEEcCC
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-R--SARIWEVRA 287 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D-g--~V~iWd~~~ 287 (1398)
+.. ..+. +........|+|||+.++..+.+ + .+.++++..
T Consensus 365 ---------------------g~~-~~lt-~~~~~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g 407 (430)
T PRK00178 365 ---------------------GSV-RILT-DTSLDESPSVAPNGTMLIYATRQQGRGVLMLVSING 407 (430)
T ss_pred ---------------------CCE-EEcc-CCCCCCCceECCCCCEEEEEEecCCceEEEEEECCC
Confidence 111 1121 11122245899999998776643 3 455666643
|
|
| >KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.31 E-value=1.8e-06 Score=111.32 Aligned_cols=194 Identities=12% Similarity=0.173 Sum_probs=143.6
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEc
Q 000602 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1398)
Q Consensus 131 h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~ 210 (1398)
+-..|.++.=+| ...+-+||+.||.|++|....++.+..........+..+.| +-+|..+..+..||.+.+|..
T Consensus 2207 ~v~~v~r~~sHp---~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f---~~qGnk~~i~d~dg~l~l~q~ 2280 (2439)
T KOG1064|consen 2207 PVENVRRMTSHP---SDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRF---NHQGNKFGIVDGDGDLSLWQA 2280 (2439)
T ss_pred ccCceeeecCCC---CCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhh---cccCCceeeeccCCceeeccc
Confidence 345677777777 66788899999999999999888877766443344444444 667889999999999999997
Q ss_pred ccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE---CCCeEEEEEcCC
Q 000602 211 DWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRA 287 (1398)
Q Consensus 211 ~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s---~Dg~V~iWd~~~ 287 (1398)
. .++....+.|........|-. ..+++++ +++.+.+||.--
T Consensus 2281 ~----------------------------------pk~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~ 2324 (2439)
T KOG1064|consen 2281 S----------------------------------PKPYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLL 2324 (2439)
T ss_pred C----------------------------------CcceeccccCCccccceeeee--hhhhccccCCCCCcccchhccc
Confidence 6 345666677888888888865 5566654 578999999754
Q ss_pred CcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEE
Q 000602 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~la 364 (1398)
... .- ..-..|...++++++.| ++|++||.+|.+++||+ ..+...+++. ++ ...+++
T Consensus 2325 ~~~-----~s----~v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrql~h~~~~----------~~-~~~~f~ 2384 (2439)
T KOG1064|consen 2325 PPM-----NS----LVHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQLRHTFQA----------LD-TREYFV 2384 (2439)
T ss_pred Ccc-----cc----eeeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHHHHHHhhh----------hh-hhheee
Confidence 322 11 13367999999999986 78999999999999999 4343333322 33 456899
Q ss_pred EEEcCCcEEEEEcCC-CCccccc
Q 000602 365 TAGFDSAIKVHQFQA-FLPGSLE 386 (1398)
Q Consensus 365 tgg~Dg~I~iwdl~~-~~l~~l~ 386 (1398)
+|+..|.++||++.. ..+.++.
T Consensus 2385 ~~ss~g~ikIw~~s~~~ll~~~p 2407 (2439)
T KOG1064|consen 2385 TGSSEGNIKIWRLSEFGLLHTFP 2407 (2439)
T ss_pred ccCcccceEEEEccccchhhcCc
Confidence 999999999999954 3444443
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.30 E-value=2e-06 Score=98.33 Aligned_cols=251 Identities=16% Similarity=0.155 Sum_probs=158.2
Q ss_pred EEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEE
Q 000602 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137 (1398)
Q Consensus 58 ~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~ 137 (1398)
..|.+|.. .|..|+-- .+. ..++.++.|++|++|.+..+.. +.-...+..++..|+.+|.+
T Consensus 729 ~nf~GH~~-~iRai~Ai-------dNE---NSFiSASkDKTVKLWSik~EgD--------~~~tsaCQfTY~aHkk~i~~ 789 (1034)
T KOG4190|consen 729 CNFTGHQE-KIRAIAAI-------DNE---NSFISASKDKTVKLWSIKPEGD--------EIGTSACQFTYQAHKKPIHD 789 (1034)
T ss_pred ecccCcHH-HhHHHHhc-------ccc---cceeeccCCceEEEEEeccccC--------ccccceeeeEhhhccCcccc
Confidence 44555554 56665543 222 1566677799999999986431 11113466788899999999
Q ss_pred EEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccC----CcceEEEEEeecCCCCCcEEEEE-ECCCeEEEEEccc
Q 000602 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP----ERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVDW 212 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~----~~~~~~s~~~~~~s~d~~~lasg-s~dg~I~vWd~~~ 212 (1398)
+.|.. +-++++++ |+-|.+||.--++.+.++... ....+.++. +.+...+.+| +...+|+++|.+.
T Consensus 790 igfL~---~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~----nv~~~iliAgcsaeSTVKl~DaRs 860 (1034)
T KOG4190|consen 790 IGFLA---DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLE----NVDRHILIAGCSAESTVKLFDARS 860 (1034)
T ss_pred eeeee---ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecc----cCcchheeeeccchhhheeeeccc
Confidence 99998 88877765 899999999888776654321 122233321 2244455554 7889999999872
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
.+ |. ..-.+..-.+..+.+.+++..+.|++++.+-..|.|.+.|.++++.
T Consensus 861 ce-------------------------~~---~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-- 910 (1034)
T KOG4190|consen 861 CE-------------------------WT---CELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-- 910 (1034)
T ss_pred cc-------------------------ce---eeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce--
Confidence 11 00 0111222245667899999999999999999999999999999875
Q ss_pred CCCceEeeeeEEecCCccEEEE-EEcCCEEEEEeCCCcEEE-EcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcC
Q 000602 293 SDSIEEVGSSVLYGHNARVWDC-CLTDSFIITAGEDCTCRV-WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 293 ~~~~~~i~~~~~~gh~~~V~~l-~~s~~~l~sgs~Dg~i~v-Wd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~D 369 (1398)
+. ....-......+ +-+++.++....|.++.| |.. +|....+.+.... +..- ...-|.-|+++...
T Consensus 911 ---IN-----swrpmecdllqlaapsdq~L~~saldHslaVnWhaldgimh~q~kpppe-pahf--lqsvgpSLV~a~~G 979 (1034)
T KOG4190|consen 911 ---IN-----SWRPMECDLLQLAAPSDQALAQSALDHSLAVNWHALDGIMHLQDKPPPE-PAHF--LQSVGPSLVTAQNG 979 (1034)
T ss_pred ---ec-----cCCcccchhhhhcCchhHHHHhhcccceeEeeehhcCCeeeeccCCCCc-chhh--hhccCceeEEeccC
Confidence 22 111111112222 223567788888999998 987 7766555554333 1111 11135567777766
Q ss_pred CcEEEEEc
Q 000602 370 SAIKVHQF 377 (1398)
Q Consensus 370 g~I~iwdl 377 (1398)
..+.+|.-
T Consensus 980 n~lgVYad 987 (1034)
T KOG4190|consen 980 NILGVYAD 987 (1034)
T ss_pred cEEEEEec
Confidence 67777754
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00042 Score=93.30 Aligned_cols=220 Identities=8% Similarity=-0.013 Sum_probs=127.2
Q ss_pred cEEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCCCeEEEEEccC-C---------------cceEEEEEeecCCC-CCcE
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVHSP-E---------------RCLLYSMKLWGDNL-EALR 195 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~~~~~~l~~~-~---------------~~~~~s~~~~~~s~-d~~~ 195 (1398)
....+++.+ ++..|+++.. .+.|+++|+.++.. .++.+. . -...+.+++ ++ ++.+
T Consensus 625 ~P~GIavd~---~gn~LYVaDt~n~~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~---dp~~g~L 697 (1057)
T PLN02919 625 RPQGLAYNA---KKNLLYVADTENHALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCF---EPVNEKV 697 (1057)
T ss_pred CCcEEEEeC---CCCEEEEEeCCCceEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEE---ecCCCeE
Confidence 357899998 8776666644 56899999977653 222110 0 001233444 45 5666
Q ss_pred EEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCE-EEEE
Q 000602 196 IASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSV 274 (1398)
Q Consensus 196 lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~-LaS~ 274 (1398)
+++.+.++.|++|+...+...... .++... .. .+.. .....-....+|+++|+++. +++-
T Consensus 698 yVad~~~~~I~v~d~~~g~v~~~~-------G~G~~~------~~----~g~~--~~~~~~~~P~GIavspdG~~LYVAD 758 (1057)
T PLN02919 698 YIAMAGQHQIWEYNISDGVTRVFS-------GDGYER------NL----NGSS--GTSTSFAQPSGISLSPDLKELYIAD 758 (1057)
T ss_pred EEEECCCCeEEEEECCCCeEEEEe-------cCCccc------cC----CCCc--cccccccCccEEEEeCCCCEEEEEE
Confidence 777778899999998732211000 000000 00 0000 00011234677999999984 4566
Q ss_pred ECCCeEEEEEcCCCccc--C-CCCceEeeeeEEec--------CCccEEEEEEc--CCEEEEEeCCCcEEEEcCCCceEE
Q 000602 275 SDDRSARIWEVRAEYWK--D-SDSIEEVGSSVLYG--------HNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK 341 (1398)
Q Consensus 275 s~Dg~V~iWd~~~~~~~--~-~~~~~~i~~~~~~g--------h~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~ 341 (1398)
+.++.|++||+.++... . +..........+.. .-.....++++ +.++++-..++.|++||..+..+.
T Consensus 759 s~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~ 838 (1057)
T PLN02919 759 SESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT 838 (1057)
T ss_pred CCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE
Confidence 67799999999875421 0 00000000000000 01123567776 567888888999999999555554
Q ss_pred EEecccC-------------ccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 342 MIKEHIG-------------RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 342 ~l~~h~~-------------~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
++.+... .....++++++|+++++-+.++.|++||+..
T Consensus 839 tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~ 889 (1057)
T PLN02919 839 TLAGTGKAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNK 889 (1057)
T ss_pred EEeccCCcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCC
Confidence 4433210 1256899999999889888999999999954
|
|
| >PRK01029 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00022 Score=87.20 Aligned_cols=214 Identities=12% Similarity=0.018 Sum_probs=120.6
Q ss_pred cEEEEeCCcCe------eccceEEEEEEecCCCCCCCCE---EEEEe-C--CcEEEEECCCCeEEEEEEeeeCccEEEEE
Q 000602 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPF---LLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 5 tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~l---Laag~-d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~ 72 (1398)
.|.+.|.+.+. ...++..=+|| || |+. +++.. + +.|.+.++.+|+.. .+..+.+ .....+
T Consensus 166 ~l~~~d~dG~~~~~lt~~~~~~~sP~wS--PD----G~~~~~~y~S~~~g~~~I~~~~l~~g~~~-~lt~~~g-~~~~p~ 237 (428)
T PRK01029 166 ELWSVDYDGQNLRPLTQEHSLSITPTWM--HI----GSGFPYLYVSYKLGVPKIFLGSLENPAGK-KILALQG-NQLMPT 237 (428)
T ss_pred eEEEEcCCCCCceEcccCCCCcccceEc--cC----CCceEEEEEEccCCCceEEEEECCCCCce-EeecCCC-CccceE
Confidence 35555554332 23445667899 99 553 22333 2 57999999888643 2332344 355678
Q ss_pred EeccccccCCCCccceeEEEEEc--CC----eEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 73 CNFINCTEGSVSTRVTFEVALFG--EK----RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~g--d~----~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
|| ||| ..|+... ++ .+.+|++.... ..+..+...++.......+|+| |
T Consensus 238 wS-------PDG----~~Laf~s~~~g~~di~~~~~~~~~g~------------~g~~~~lt~~~~~~~~~p~wSP---D 291 (428)
T PRK01029 238 FS-------PRK----KLLAFISDRYGNPDLFIQSFSLETGA------------IGKPRRLLNEAFGTQGNPSFSP---D 291 (428)
T ss_pred EC-------CCC----CEEEEEECCCCCcceeEEEeecccCC------------CCcceEeecCCCCCcCCeEECC---C
Confidence 99 999 4555433 22 23446655321 0111222222223446789999 9
Q ss_pred CcEEEEEE-CCCeEEEEE--cCC-CeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC---CeEEEEEcccCCccccC
Q 000602 147 NRSLAIGC-SDNSIRVWD--ISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLL 219 (1398)
Q Consensus 147 g~~Latgs-~Dg~V~vWd--~~~-~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d---g~I~vWd~~~~~~~~~~ 219 (1398)
|+.|+..+ .++...+|. +.. +.....+..... ......| +||+..|+..+.+ ..|.+||+.
T Consensus 292 G~~Laf~s~~~g~~~ly~~~~~~~g~~~~~lt~~~~-~~~~p~w---SPDG~~Laf~~~~~g~~~I~v~dl~-------- 359 (428)
T PRK01029 292 GTRLVFVSNKDGRPRIYIMQIDPEGQSPRLLTKKYR-NSSCPAW---SPDGKKIAFCSVIKGVRQICVYDLA-------- 359 (428)
T ss_pred CCEEEEEECCCCCceEEEEECcccccceEEeccCCC-CccceeE---CCCCCEEEEEEcCCCCcEEEEEECC--------
Confidence 99887665 466555554 432 222333332221 2234444 7899988876543 468888887
Q ss_pred CCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC---CCeEEEEEcCCCcc
Q 000602 220 NSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---DRSARIWEVRAEYW 290 (1398)
Q Consensus 220 ~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~---Dg~V~iWd~~~~~~ 290 (1398)
.++. ..+......+....|+|||+.|+..+. ...|.+||+..++.
T Consensus 360 -------------------------~g~~-~~Lt~~~~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~ 407 (428)
T PRK01029 360 -------------------------TGRD-YQLTTSPENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT 407 (428)
T ss_pred -------------------------CCCe-EEccCCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 2222 223333345677899999998875433 34688888877654
|
|
| >KOG4190 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.21 E-value=5.4e-06 Score=94.93 Aligned_cols=297 Identities=14% Similarity=0.181 Sum_probs=169.8
Q ss_pred EEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCC-ceEeeeeEEecCCccEEEEEEcCCEEEEEeC
Q 000602 248 NLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS-IEEVGSSVLYGHNARVWDCCLTDSFIITAGE 326 (1398)
Q Consensus 248 ~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~-~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~ 326 (1398)
.+..+.||...|..++--.+.+.++++|.|++|++|.++......+.. -+ .+...|..+|.++.|-...-..++.
T Consensus 727 rL~nf~GH~~~iRai~AidNENSFiSASkDKTVKLWSik~EgD~~~tsaCQ----fTY~aHkk~i~~igfL~~lr~i~Sc 802 (1034)
T KOG4190|consen 727 RLCNFTGHQEKIRAIAAIDNENSFISASKDKTVKLWSIKPEGDEIGTSACQ----FTYQAHKKPIHDIGFLADLRSIASC 802 (1034)
T ss_pred eeecccCcHHHhHHHHhcccccceeeccCCceEEEEEeccccCccccceee----eEhhhccCcccceeeeeccceeeec
Confidence 466788999999999888888899999999999999998643210100 11 4778899999999997433334456
Q ss_pred CCcEEEEcC-CCceEEEEec-ccCccEEEEEEcC--CCCEEEE-EEcCCcEEEEEcCCCCcccccCCCccccccCCccEE
Q 000602 327 DCTCRVWGS-DGKQLKMIKE-HIGRGIWRCLYDS--LSSLLVT-AGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1398)
Q Consensus 327 Dg~i~vWd~-~g~~l~~l~~-h~~~~V~sl~~sp--dg~~lat-gg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~ 401 (1398)
||.+.+||. -|+.+..+.. .....+..+..-| +...++. ++...+|+++|.+.-. -..
T Consensus 803 D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce-----------------~~~ 865 (1034)
T KOG4190|consen 803 DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCE-----------------WTC 865 (1034)
T ss_pred cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeeccccc-----------------cee
Confidence 899999998 7777664321 1111233333333 3344444 4789999999985210 000
Q ss_pred EeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE-EcCCcEEEEEeecCCCc-eeEEEEeecCCccEEEEeccCCCCCC
Q 000602 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSV-NWNKILQVSEGMPIICMDLLSNEPKY 479 (1398)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~-t~~g~i~~~~l~~~~~~-~w~~i~~~~~~~~i~~l~~~~~~~~~ 479 (1398)
.++.-+ ..+....+++++..+.|..+++ -++|.+...+..+.... .|+.+ .| ++ ..+
T Consensus 866 E~kVcn-------a~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~vINswrpm---------ec-dl----lql 924 (1034)
T KOG4190|consen 866 ELKVCN-------APGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKVINSWRPM---------EC-DL----LQL 924 (1034)
T ss_pred eEEecc-------CCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCceeccCCcc---------cc-hh----hhh
Confidence 111100 0122356899999999876665 47888775443332211 14221 11 11 112
Q ss_pred cCCCCcEEEEEeCCCCEEE-EEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEEEEcCCCcEEEEecCCCCCc
Q 000602 480 PCGIDDWVALGDGKGNMTI-VRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSS 558 (1398)
Q Consensus 480 s~~~~~~la~gs~dG~I~I-wd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~ 558 (1398)
..|.+..++....|..+.+ |..-++....+ ..-...+.+ .+. .-|.-|++......+.+|.-.....
T Consensus 925 aapsdq~L~~saldHslaVnWhaldgimh~q----~kpppepah-flq------svgpSLV~a~~Gn~lgVYad~a~~h- 992 (1034)
T KOG4190|consen 925 AAPSDQALAQSALDHSLAVNWHALDGIMHLQ----DKPPPEPAH-FLQ------SVGPSLVTAQNGNILGVYADSAELH- 992 (1034)
T ss_pred cCchhHHHHhhcccceeEeeehhcCCeeeec----cCCCCcchh-hhh------ccCceeEEeccCcEEEEEecchhhh-
Confidence 2455667777777877777 76554432111 110111111 111 1244566666656677774221110
Q ss_pred cccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEEE
Q 000602 559 VCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVL 606 (1398)
Q Consensus 559 ~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~I 606 (1398)
...+.+.-.+. .+.+..|+++.-|-+.-+..|...|.|.+
T Consensus 993 ----a~stitKiR~d----~f~G~lTala~LPLN~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 993 ----AESTITKIRPD----EFPGTLTALAPLPLNCAFLAGNEHGAIAL 1032 (1034)
T ss_pred ----hhhhhcccccc----ccCCccceeeeccccchhhccCCCCceee
Confidence 00111111122 23566788888887777778999998876
|
|
| >KOG4714 consensus Nucleoporin [Nuclear structure] | Back alignment and domain information |
|---|
Probab=98.21 E-value=1.6e-05 Score=84.32 Aligned_cols=250 Identities=12% Similarity=0.158 Sum_probs=136.3
Q ss_pred eEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee-eCccEEEEEEeccc--cc--cCCCCccceeEEEE
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFIN--CT--EGSVSTRVTFEVAL 93 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~-~~~~V~~i~fs~~~--~~--~~pdg~~~~~~la~ 93 (1398)
|+.+.|+ .+ ..|+.+. ++.+.......+.++...+-- .-++.+.++.+.+. +. .-|+ .-+++
T Consensus 39 ~~~~~~v--~~-----~~lf~~e~~~~~ss~g~~r~~~~~~~~rt~~i~~~~~~a~~sep~p~~~~s~~~-----t~V~~ 106 (319)
T KOG4714|consen 39 LSKVSLS--AE-----YILFTGETSSQIISLGKGRGRCISLWERDDGIDPFKVLAKNSEIDPNDACTMTD-----NRVCI 106 (319)
T ss_pred EEEeech--hh-----heeecccchhheeeeccceEEEechhhcccCcCceeeeeccCCCCCcccccccC-----CceEe
Confidence 6677776 44 4566666 688888887776665443321 12355666654221 00 0122 34455
Q ss_pred Ec-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-----CCCeEEEEEcCCC
Q 000602 94 FG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-----SDNSIRVWDISNS 167 (1398)
Q Consensus 94 ~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-----~Dg~V~vWd~~~~ 167 (1398)
.+ |+.+.+++.+.. +...+.++.-...-.+.++.. .+..|.++. .-+..+.|+++..
T Consensus 107 ~~~dg~~~v~s~~~~--------------~~~~~~i~~~~~~~as~~~~~---~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 107 GYADGSLAVFSTDKD--------------LALMSRIPSIHSGSASRKICR---HGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred cCCCceEEEEechHH--------------Hhhhhhcccccccccccceee---cccEEecCCcceEeeccceeeeccccc
Confidence 44 899999998741 122222211111111222222 233333321 1223556666433
Q ss_pred eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000602 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1398)
Q Consensus 168 ~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1398)
+.+..-...... +.+++-+ .....+++.|+.||.+-+||.+. -.-
T Consensus 170 ~t~~~~~~~~~~-v~~l~~h--p~qq~~v~cgt~dg~~~l~d~rn--------------------------------~~~ 214 (319)
T KOG4714|consen 170 KTLIPSKKALDA-VTALCSH--PAQQHLVCCGTDDGIVGLWDARN--------------------------------VAM 214 (319)
T ss_pred cccccccccccc-chhhhCC--cccccEEEEecCCCeEEEEEccc--------------------------------ccc
Confidence 222111111111 3334333 23456788899999999999981 123
Q ss_pred EEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEcCCCccc------------CCCCceE---eeeeEEecCCccE
Q 000602 248 NLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWK------------DSDSIEE---VGSSVLYGHNARV 311 (1398)
Q Consensus 248 ~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~~~~~~~------------~~~~~~~---i~~~~~~gh~~~V 311 (1398)
+...+..|+..|+.|.|+| ++..|.++++||.+..||..+.-.. .++..+. +. ..+......|
T Consensus 215 p~S~l~ahk~~i~eV~FHpk~p~~Lft~sedGslw~wdas~~~l~i~~~~s~~s~WLsgD~v~s~i~i~-~ll~~~~~Si 293 (319)
T KOG4714|consen 215 PVSLLKAHKAEIWEVHFHPKNPEHLFTCSEDGSLWHWDASTTFLSISNQASVISSWLSGDPVKSRIEIT-SLLPSRSLSI 293 (319)
T ss_pred hHHHHHHhhhhhhheeccCCCchheeEecCCCcEEEEcCCCceEEecCccccccccccCCcccceEeee-ccccccceee
Confidence 4455788999999999999 6678999999999999998853221 1111110 11 0222223345
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEc
Q 000602 312 WDCCLTDSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 312 ~~l~~s~~~l~sgs~Dg~i~vWd 334 (1398)
.++...+..|++|+.-+.|.+++
T Consensus 294 nsfDV~g~~lVcgtd~eaIyl~~ 316 (319)
T KOG4714|consen 294 NSFDVLGPCLVCGTDAEAIYLTR 316 (319)
T ss_pred eeeeccCceEEeccccceEEEec
Confidence 55555578888888888887764
|
|
| >KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00047 Score=80.34 Aligned_cols=275 Identities=11% Similarity=0.131 Sum_probs=153.7
Q ss_pred eEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG---- 95 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g---- 95 (1398)
=|-+.|| |- |.||++-.-.-|.+|--++-..++.|. |. .|.-+.|| |.- .+|++++
T Consensus 213 etyv~wS--P~----GTYL~t~Hk~GI~lWGG~~f~r~~RF~-Hp--~Vq~idfS-------P~E----kYLVT~s~~p~ 272 (698)
T KOG2314|consen 213 ETYVRWS--PK----GTYLVTFHKQGIALWGGESFDRIQRFY-HP--GVQFIDFS-------PNE----KYLVTYSPEPI 272 (698)
T ss_pred eeeEEec--CC----ceEEEEEeccceeeecCccHHHHHhcc-CC--CceeeecC-------Ccc----ceEEEecCCcc
Confidence 3678999 98 999999887789999877776667765 34 48899999 774 7888776
Q ss_pred --------CCeEEEEEecCCCCCCCCCCCcccccceeeeeccc--CCCcEE-EEEEEeecCCCcEEEEEECCCeEEEEEc
Q 000602 96 --------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR--LSHWVF-DVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1398)
Q Consensus 96 --------d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~--h~~~V~-~v~fsp~~~dg~~Latgs~Dg~V~vWd~ 164 (1398)
...++|||+.++. +.+.+.. ....++ -..||. |++++|--.. ++|.||+.
T Consensus 273 ~~~~~d~e~~~l~IWDI~tG~---------------lkrsF~~~~~~~~~WP~frWS~---DdKy~Arm~~-~sisIyEt 333 (698)
T KOG2314|consen 273 IVEEDDNEGQQLIIWDIATGL---------------LKRSFPVIKSPYLKWPIFRWSH---DDKYFARMTG-NSISIYET 333 (698)
T ss_pred ccCcccCCCceEEEEEccccc---------------hhcceeccCCCccccceEEecc---CCceeEEecc-ceEEEEec
Confidence 1679999999854 2222222 122222 367888 9999987655 67999998
Q ss_pred CCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 165 SNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 165 ~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
.+-.++.. +.-.-..+....| +|.+.+|| .|...+..+... +.+...+
T Consensus 334 psf~lld~-Kslki~gIr~Fsw---sP~~~llA---------Ywtpe~~~~par------------------vtL~evP- 381 (698)
T KOG2314|consen 334 PSFMLLDK-KSLKISGIRDFSW---SPTSNLLA---------YWTPETNNIPAR------------------VTLMEVP- 381 (698)
T ss_pred Cceeeecc-cccCCccccCccc---CCCcceEE---------EEcccccCCcce------------------EEEEecC-
Confidence 76333211 1000011112222 45444433 444432111100 0000000
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCEEEEEE----------CCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEE
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS----------DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~LaS~s----------~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l 314 (1398)
+.+.+++-.-|.-.=..+.|-.+|.+|+.-- .--.+-|+.++....+ + ....-...|...
T Consensus 382 s~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIp----v------e~velke~vi~F 451 (698)
T KOG2314|consen 382 SKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIP----V------EVVELKESVIAF 451 (698)
T ss_pred ccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCC----c------eeeecchheeee
Confidence 2223333222322223455666666665321 1123455555544331 1 112233456677
Q ss_pred EEc--CCEEEEEeC---CCcEEEEcCC--C---ceEEEEecccCccEEEEEEcCCCCEEEEEE---cCCcEEEEEcC
Q 000602 315 CLT--DSFIITAGE---DCTCRVWGSD--G---KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG---FDSAIKVHQFQ 378 (1398)
Q Consensus 315 ~~s--~~~l~sgs~---Dg~i~vWd~~--g---~~l~~l~~h~~~~V~sl~~spdg~~latgg---~Dg~I~iwdl~ 378 (1398)
+|. |+.+++-+. ..++.+|.++ . +.+..+.. ...+.+-|+|.|++++.++ ..|.+.++|+.
T Consensus 452 aWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk---~~~N~vfwsPkG~fvvva~l~s~~g~l~F~D~~ 525 (698)
T KOG2314|consen 452 AWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK---KFANTVFWSPKGRFVVVAALVSRRGDLEFYDTD 525 (698)
T ss_pred eeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc---cccceEEEcCCCcEEEEEEecccccceEEEecc
Confidence 776 455544432 2578888873 2 22333433 2467899999999887754 57889999885
|
|
| >PRK04792 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00016 Score=89.14 Aligned_cols=165 Identities=8% Similarity=0.036 Sum_probs=96.4
Q ss_pred cEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEe--C--CcEEEEECCCCeEEEEEEeeeCccEEEEEEe
Q 000602 5 DLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGS--G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 5 tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~--d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs 74 (1398)
.+.++|..... ...++.+.+|| || |+.|+..+ + ..|.+||+.+++... +....+ .....+|+
T Consensus 199 ~l~i~d~dG~~~~~l~~~~~~~~~p~wS--PD----G~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g-~~~~~~wS 270 (448)
T PRK04792 199 QLMIADYDGYNEQMLLRSPEPLMSPAWS--PD----GRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPG-INGAPRFS 270 (448)
T ss_pred EEEEEeCCCCCceEeecCCCcccCceEC--CC----CCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCC-CcCCeeEC
Confidence 45566654432 34567889999 99 78777654 2 469999998886532 222222 34567899
Q ss_pred ccccccCCCCccceeEEEEEc-CCe--EEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 75 FINCTEGSVSTRVTFEVALFG-EKR--VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~g-d~~--V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
|||+ .++.+.. ++. |.++|++... ...+..+........|+| ||+.|+
T Consensus 271 -------PDG~---~La~~~~~~g~~~Iy~~dl~tg~----------------~~~lt~~~~~~~~p~wSp---DG~~I~ 321 (448)
T PRK04792 271 -------PDGK---KLALVLSKDGQPEIYVVDIATKA----------------LTRITRHRAIDTEPSWHP---DGKSLI 321 (448)
T ss_pred -------CCCC---EEEEEEeCCCCeEEEEEECCCCC----------------eEECccCCCCccceEECC---CCCEEE
Confidence 9983 3333332 554 6666665421 223334555667889999 999887
Q ss_pred EEEC-CC--eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC-CCeEEE--EEcc
Q 000602 152 IGCS-DN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEIIV--WKVD 211 (1398)
Q Consensus 152 tgs~-Dg--~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~-dg~I~v--Wd~~ 211 (1398)
..+. ++ .|.++|+.+++......... ......+ +||+.+|+..+. ++...+ +|+.
T Consensus 322 f~s~~~g~~~Iy~~dl~~g~~~~Lt~~g~--~~~~~~~---SpDG~~l~~~~~~~g~~~I~~~dl~ 382 (448)
T PRK04792 322 FTSERGGKPQIYRVNLASGKVSRLTFEGE--QNLGGSI---TPDGRSMIMVNRTNGKFNIARQDLE 382 (448)
T ss_pred EEECCCCCceEEEEECCCCCEEEEecCCC--CCcCeeE---CCCCCEEEEEEecCCceEEEEEECC
Confidence 6653 33 56667777776433211111 1122344 788888876554 444444 5554
|
|
| >COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.19 E-value=1.5e-05 Score=86.11 Aligned_cols=250 Identities=13% Similarity=0.116 Sum_probs=146.2
Q ss_pred CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe-----EEEEEccCCcc-----------eEEEEEeecCCCCCc
Q 000602 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-----IILEVHSPERC-----------LLYSMKLWGDNLEAL 194 (1398)
Q Consensus 131 h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-----~~~~l~~~~~~-----------~~~s~~~~~~s~d~~ 194 (1398)
..+.|++|.|.. .|.+|++|...|.|.++.-.... ....+++++.. -+..+.+.... ...
T Consensus 25 ead~ItaVefd~---tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t-~r~ 100 (460)
T COG5170 25 EADKITAVEFDE---TGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDT-GRN 100 (460)
T ss_pred ccceeeEEEecc---ccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCC-Ccc
Confidence 346799999988 99999999888999999875432 12223333211 12234443332 233
Q ss_pred EEEEEECCCeEEEEEcccCCccccCCCCC---CCCCCCCCC-Ccceeeeccccccee-----EEEEE-eCccCCEEEEEE
Q 000602 195 RIASGTIYNEIIVWKVDWEHVAPLLNSPE---GNHAHGSSS-DFKCFKLQDQQHTAV-----NLFRL-VGHEGSIFRIEW 264 (1398)
Q Consensus 195 ~lasgs~dg~I~vWd~~~~~~~~~~~~~~---~~s~~~~~~-~~~~i~i~~~~~~~~-----~~~~l-~gH~~~I~~vaf 264 (1398)
.++..+.|.+|++|.+....+.....+.. ..++.+... ....+++........ +.+.. ..|.-.|+++.|
T Consensus 101 hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~ 180 (460)
T COG5170 101 HFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISF 180 (460)
T ss_pred eEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeee
Confidence 45666789999999998544322221111 112222111 111122211111111 11222 578889999999
Q ss_pred cCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcCCCc---
Q 000602 265 SSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGSDGK--- 338 (1398)
Q Consensus 265 spdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~~g~--- 338 (1398)
..|...++|+ +|-.|.+|++.-.... ..+-.++|.....-+.-|++..|++ ..+.-.+..|.|++-|+...
T Consensus 181 NsD~et~lSa-DdLrINLWnl~i~D~s--FnIVDiKP~nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alc 257 (460)
T COG5170 181 NSDKETLLSA-DDLRINLWNLEIIDGS--FNIVDIKPHNMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALC 257 (460)
T ss_pred cCchheeeec-cceeeeeccccccCCc--eEEEeccCccHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhc
Confidence 9999998886 5668999998754321 1122122211222234578888884 67777888999999998311
Q ss_pred --eEEE------------EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC--CCCcccccCCC
Q 000602 339 --QLKM------------IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ--AFLPGSLESHP 389 (1398)
Q Consensus 339 --~l~~------------l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~--~~~l~~l~~~~ 389 (1398)
..+. +.+-.. .|..+.|+++|++|++-.. -+|+|||.+ ..++.++..|.
T Consensus 258 dn~~klfe~~~D~v~~~ff~eivs-SISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~ 322 (460)
T COG5170 258 DNSKKLFELTIDGVDVDFFEEIVS-SISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHC 322 (460)
T ss_pred cCchhhhhhccCcccchhHHHHhh-hhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHH
Confidence 1111 111122 4778899999999886553 489999994 35555554443
|
|
| >COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown] | Back alignment and domain information |
|---|
Probab=98.15 E-value=0.0012 Score=75.68 Aligned_cols=143 Identities=12% Similarity=0.052 Sum_probs=101.7
Q ss_pred CCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCC-eEEEEEecCCCCCCC
Q 000602 34 SLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK-RVKLFELNFELSPNS 112 (1398)
Q Consensus 34 ~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~-~V~vwdl~~~~~~~~ 112 (1398)
.|.+++..+-|...|.+...+-. ++..+..+|.-..+. .++ +..++..-|+ .+-|+|.+..
T Consensus 331 ~Gd~ia~VSRGkaFi~~~~~~~~---iqv~~~~~VrY~r~~-------~~~---e~~vigt~dgD~l~iyd~~~~----- 392 (668)
T COG4946 331 NGDYIALVSRGKAFIMRPWDGYS---IQVGKKGGVRYRRIQ-------VDP---EGDVIGTNDGDKLGIYDKDGG----- 392 (668)
T ss_pred CCcEEEEEecCcEEEECCCCCee---EEcCCCCceEEEEEc-------cCC---cceEEeccCCceEEEEecCCc-----
Confidence 47899998888888888766644 343344467777776 443 1344444455 8999999852
Q ss_pred CCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC
Q 000602 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d 192 (1398)
.++.+.+.-+.|.++..+| +|++++++.....+.+.|++++... .+...+..++....+ +|+
T Consensus 393 -----------e~kr~e~~lg~I~av~vs~---dGK~~vvaNdr~el~vididngnv~-~idkS~~~lItdf~~---~~n 454 (668)
T COG4946 393 -----------EVKRIEKDLGNIEAVKVSP---DGKKVVVANDRFELWVIDIDNGNVR-LIDKSEYGLITDFDW---HPN 454 (668)
T ss_pred -----------eEEEeeCCccceEEEEEcC---CCcEEEEEcCceEEEEEEecCCCee-EecccccceeEEEEE---cCC
Confidence 2345556668899999999 9999999988888999999998653 333344456667777 677
Q ss_pred CcEEEEEECC----CeEEEEEccc
Q 000602 193 ALRIASGTIY----NEIIVWKVDW 212 (1398)
Q Consensus 193 ~~~lasgs~d----g~I~vWd~~~ 212 (1398)
+.++|-+--+ ..|+++|+..
T Consensus 455 sr~iAYafP~gy~tq~Iklydm~~ 478 (668)
T COG4946 455 SRWIAYAFPEGYYTQSIKLYDMDG 478 (668)
T ss_pred ceeEEEecCcceeeeeEEEEecCC
Confidence 8888876544 5688999884
|
|
| >PLN02919 haloacid dehalogenase-like hydrolase family protein | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.0015 Score=88.16 Aligned_cols=272 Identities=12% Similarity=0.090 Sum_probs=144.2
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee--e-----------CccEEEEEEeccccccCCCCcc
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF--H-----------GIRLHGISCNFINCTEGSVSTR 86 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~--~-----------~~~V~~i~fs~~~~~~~pdg~~ 86 (1398)
..++++ ++ .+++.++-. ++.|++||.. +..+..+... . -...++|++. ++++
T Consensus 571 ~gvavd--~~---~g~lyVaDs~n~rI~v~d~~-G~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd-------~~gn- 636 (1057)
T PLN02919 571 GKLAID--LL---NNRLFISDSNHNRIVVTDLD-GNFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYN-------AKKN- 636 (1057)
T ss_pred ceEEEE--CC---CCeEEEEECCCCeEEEEeCC-CCEEEEEccCCCcCCCCCchhccccCCCcEEEEe-------CCCC-
Confidence 356777 54 245666655 5889999975 4444444320 0 0235788888 7762
Q ss_pred ceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc-------CCCcEEEEEEEeecCCC-cEEEEEECCC
Q 000602 87 VTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-------LSHWVFDVCFLKVCNGN-RSLAIGCSDN 157 (1398)
Q Consensus 87 ~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~-------h~~~V~~v~fsp~~~dg-~~Latgs~Dg 157 (1398)
.++++ .+.+.|+++|+....... +.. .+.......+ .-..-++++|+| ++ .++++...++
T Consensus 637 --~LYVaDt~n~~Ir~id~~~~~V~t--lag----~G~~g~~~~gg~~~~~~~ln~P~gVa~dp---~~g~LyVad~~~~ 705 (1057)
T PLN02919 637 --LLYVADTENHALREIDFVNETVRT--LAG----NGTKGSDYQGGKKGTSQVLNSPWDVCFEP---VNEKVYIAMAGQH 705 (1057)
T ss_pred --EEEEEeCCCceEEEEecCCCEEEE--Eec----cCcccCCCCCChhhhHhhcCCCeEEEEec---CCCeEEEEECCCC
Confidence 33333 336789999886422000 000 0000000000 012346899998 54 4556666788
Q ss_pred eEEEEEcCCCeEEEEEccC--------------CcceEEEEEeecCCCCCc-EEEEEECCCeEEEEEcccCCccccCCCC
Q 000602 158 SIRVWDISNSSIILEVHSP--------------ERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 158 ~V~vWd~~~~~~~~~l~~~--------------~~~~~~s~~~~~~s~d~~-~lasgs~dg~I~vWd~~~~~~~~~~~~~ 222 (1398)
.|++||..++.... +.+. .......+++ ++++. ++++.+.++.|++||+.++.........
T Consensus 706 ~I~v~d~~~g~v~~-~~G~G~~~~~~g~~~~~~~~~~P~GIav---spdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~ 781 (1057)
T PLN02919 706 QIWEYNISDGVTRV-FSGDGYERNLNGSSGTSTSFAQPSGISL---SPDLKELYIADSESSSIRALDLKTGGSRLLAGGD 781 (1057)
T ss_pred eEEEEECCCCeEEE-EecCCccccCCCCccccccccCccEEEE---eCCCCEEEEEECCCCeEEEEECCCCcEEEEEecc
Confidence 99999998775432 1110 0011223444 56776 4555667799999998743211000000
Q ss_pred CCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeee-
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS- 301 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~- 301 (1398)
... ........+...... ...-....+++++++|..+++-+.++.|++||..++.. ....+.
T Consensus 782 ~~~-------~~~l~~fG~~dG~g~-----~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v-----~tiaG~G 844 (1057)
T PLN02919 782 PTF-------SDNLFKFGDHDGVGS-----EVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRV-----TTLAGTG 844 (1057)
T ss_pred ccc-------CcccccccCCCCchh-----hhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeE-----EEEeccC
Confidence 000 000000000000000 00112345899999999999999999999999987654 111100
Q ss_pred -------eEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCc
Q 000602 302 -------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGK 338 (1398)
Q Consensus 302 -------~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~ 338 (1398)
....+.-.....++++ ++.+++-+.++.|++||+ +++
T Consensus 845 ~~G~~dG~~~~a~l~~P~GIavd~dG~lyVaDt~Nn~Irvid~~~~~ 891 (1057)
T PLN02919 845 KAGFKDGKALKAQLSEPAGLALGENGRLFVADTNNSLIRYLDLNKGE 891 (1057)
T ss_pred CcCCCCCcccccccCCceEEEEeCCCCEEEEECCCCEEEEEECCCCc
Confidence 0011122356778886 578888888999999999 443
|
|
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=98.08 E-value=1.4e-05 Score=61.72 Aligned_cols=38 Identities=37% Similarity=0.594 Sum_probs=36.3
Q ss_pred eEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 247 ~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd 284 (1398)
+++..+.+|.+.|++|+|+|++.+|++++.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 56788999999999999999999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0038 Score=68.36 Aligned_cols=236 Identities=11% Similarity=0.062 Sum_probs=126.0
Q ss_pred CCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEE
Q 000602 82 SVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRV 161 (1398)
Q Consensus 82 pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~v 161 (1398)
++| ++||+--|..|.|=...++- ..+..++ +..+.-.-.=.-++|+| |+.+||.+...|+|++
T Consensus 7 ~~G----k~lAi~qd~~iEiRsa~Ddf---------~si~~kc-qVpkD~~PQWRkl~WSp---D~tlLa~a~S~G~i~v 69 (282)
T PF15492_consen 7 SDG----KLLAILQDQCIEIRSAKDDF---------SSIIGKC-QVPKDPNPQWRKLAWSP---DCTLLAYAESTGTIRV 69 (282)
T ss_pred CCC----cEEEEEeccEEEEEeccCCc---------hheeEEE-ecCCCCCchheEEEECC---CCcEEEEEcCCCeEEE
Confidence 787 79999989888887766432 1111222 11111111236799999 9999999999999999
Q ss_pred EEcCCCeEEEEEccC------CcceEEEEEeecCCCC---CcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000602 162 WDISNSSIILEVHSP------ERCLLYSMKLWGDNLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1398)
Q Consensus 162 Wd~~~~~~~~~l~~~------~~~~~~s~~~~~~s~d---~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1398)
+|+... .+..+... ..+.+..+.|...... ...|+.-+.+|.++-+-+..+...
T Consensus 70 fdl~g~-~lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q---------------- 132 (282)
T PF15492_consen 70 FDLMGS-ELFVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQ---------------- 132 (282)
T ss_pred Eecccc-eeEEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCC----------------
Confidence 999653 33333321 1233334444322111 123555556666666655311100
Q ss_pred CcceeeecccccceeEEEEEeC-ccCCEEEEEEcCCCCEEEEEECCCe-EEEEEcCCCcccCCCCceEeeeeEEecCCcc
Q 000602 233 DFKCFKLQDQQHTAVNLFRLVG-HEGSIFRIEWSSCGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1398)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~g-H~~~I~~vafspdg~~LaS~s~Dg~-V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~ 310 (1398)
.........+.. +...|.++.|+|..+.|+.|+.... -..+...... +... +.+.+-
T Consensus 133 ----------~y~e~hsfsf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~G------LtaW--RiL~~~--- 191 (282)
T PF15492_consen 133 ----------GYQENHSFSFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCG------LTAW--RILSDS--- 191 (282)
T ss_pred ----------cceeeEEEEecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccC------ceEE--EEcCCC---
Confidence 001122223333 4778999999999888877654322 0000000000 0000 011111
Q ss_pred EEEEEEcCCE-EEEEeCCCc------EEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 311 VWDCCLTDSF-IITAGEDCT------CRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 311 V~~l~~s~~~-l~sgs~Dg~------i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
|-+ .++..+|+. ..+|.+..-.+...++...+.|..|..+|||..||+...+|.|.+|++..
T Consensus 192 -------Pyyk~v~~~~~~~~~~~~~~~~~~~~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPs 260 (282)
T PF15492_consen 192 -------PYYKQVTSSEDDITASSKRRGLLRIPSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPS 260 (282)
T ss_pred -------CcEEEccccCccccccccccceeeccceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCc
Confidence 111 122222221 12333321112222233344799999999999999999999999999943
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.012 Score=63.08 Aligned_cols=99 Identities=11% Similarity=-0.011 Sum_probs=70.8
Q ss_pred CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEE-cCCEEEEEeCCCcEEEEcC-CCceEEEEec
Q 000602 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-TDSFIITAGEDCTCRVWGS-DGKQLKMIKE 345 (1398)
Q Consensus 268 g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~-s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~ 345 (1398)
..+++.||..+.+.--|..+++.. .+ . --..+|-+-+. -+++++.|...|.+.+-+. +|.+...+..
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~----We-----~--ilg~RiE~sa~vvgdfVV~GCy~g~lYfl~~~tGs~~w~f~~ 91 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI----WE-----A--ILGVRIECSAIVVGDFVVLGCYSGGLYFLCVKTGSQIWNFVI 91 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE----ee-----h--hhCceeeeeeEEECCEEEEEEccCcEEEEEecchhheeeeee
Confidence 356777888888888888887652 11 1 11233433333 3889999999999999999 8877777765
Q ss_pred ccCccEE-EEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 346 HIGRGIW-RCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 346 h~~~~V~-sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
... |. .....+++..+..|+.|+.....|...
T Consensus 92 ~~~--vk~~a~~d~~~glIycgshd~~~yalD~~~ 124 (354)
T KOG4649|consen 92 LET--VKVRAQCDFDGGLIYCGSHDGNFYALDPKT 124 (354)
T ss_pred hhh--hccceEEcCCCceEEEecCCCcEEEecccc
Confidence 543 33 234678899999999999999999853
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.00 E-value=0.00068 Score=72.54 Aligned_cols=244 Identities=11% Similarity=0.005 Sum_probs=145.5
Q ss_pred EEEEeCCcCe--eccceEEEEEEecCCCC-CCCCEEEEEe-CCcEEEEECCCCeEEEE-EEeeeCccEEEEEEecccccc
Q 000602 6 LSEWRLDVGQ--YLGEISALCFVHLPSHL-SSLPFLLAGS-GSQVLLYDLEAGTLIRP-FQVFHGIRLHGISCNFINCTE 80 (1398)
Q Consensus 6 v~iWdl~~~~--h~~~Vtalafs~~pd~~-~~g~lLaag~-dg~I~Iwd~~tg~~l~~-~~~~~~~~V~~i~fs~~~~~~ 80 (1398)
+-+|++-+.. --.--+.+.|- |..+ ..-.+||+|+ -|...+|.+.+.+.... ...+ +.+|.+....|-.
T Consensus 54 v~i~~~y~N~~~iv~~y~g~~F~--p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~s----nn~v~~~~r~cd~ 127 (344)
T KOG4532|consen 54 VPINSHYSNPKGIVEFYTGMTFT--PGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVS----NNDVTLVKRYCDL 127 (344)
T ss_pred eEeccccCCchhhEEeeeccccc--chHhhccccEEEeccccceeeeecccCcccceeeeccc----ccchhhhhhhccc
Confidence 4566655443 00111456666 6311 1235788876 69999999987654322 2222 2333333111110
Q ss_pred CCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCC--cEEEEEEEeecCCCcEEEEEECCCe
Q 000602 81 GSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH--WVFDVCFLKVCNGNRSLAIGCSDNS 158 (1398)
Q Consensus 81 ~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~--~V~~v~fsp~~~dg~~Latgs~Dg~ 158 (1398)
. ..++++.-|.++++.+++.+.. .+. -|.. .++++++++ +++++++.+..+.
T Consensus 128 -~-----~~~~i~sndht~k~~~~~~~s~------------~~~-----~h~~~~~~ns~~~sn---d~~~~~~Vgds~~ 181 (344)
T KOG4532|consen 128 -K-----FPLNIASNDHTGKTMVVSGDSN------------KFA-----VHNQNLTQNSLHYSN---DPSWGSSVGDSRR 181 (344)
T ss_pred -c-----cceeeccCCcceeEEEEecCcc------------cce-----eeccccceeeeEEcC---CCceEEEecCCCc
Confidence 1 1467777799999999985330 111 1222 388999999 9999999999999
Q ss_pred EEEEEcCCC-eEEEE-EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcce
Q 000602 159 IRVWDISNS-SIILE-VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1398)
Q Consensus 159 V~vWd~~~~-~~~~~-l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1398)
|-.|.+... +.+.. ...+....-++..| +.....+|+++.||++.|||++.-.. +
T Consensus 182 Vf~y~id~~sey~~~~~~a~t~D~gF~~S~---s~~~~~FAv~~Qdg~~~I~DVR~~~t-p------------------- 238 (344)
T KOG4532|consen 182 VFRYAIDDESEYIENIYEAPTSDHGFYNSF---SENDLQFAVVFQDGTCAIYDVRNMAT-P------------------- 238 (344)
T ss_pred ceEEEeCCccceeeeeEecccCCCceeeee---ccCcceEEEEecCCcEEEEEeccccc-c-------------------
Confidence 999999653 33322 33333333444444 66778999999999999999982110 0
Q ss_pred eeecccccceeEEEEEeCccCCEEEEEEcCCCC--EEEEEECCCeEEEEEcCCCcccCCCCceEeee--eEEecCCcc-E
Q 000602 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS--KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNAR-V 311 (1398)
Q Consensus 237 i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~--~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~--~~~~gh~~~-V 311 (1398)
....-.+-..|.+.+..+.|++-|. +|...-.-+.+.+-|+++... .+.+.+ -....|... |
T Consensus 239 --------m~~~sstrp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~-----~q~I~i~~d~~~~~~tq~i 305 (344)
T KOG4532|consen 239 --------MAEISSTRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVN-----HQVIVIPDDVERKHNTQHI 305 (344)
T ss_pred --------hhhhcccCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCce-----eeEEecCcccccccccccc
Confidence 0001112235899999999998663 444444556899999998765 332211 123334433 6
Q ss_pred EEEEEc
Q 000602 312 WDCCLT 317 (1398)
Q Consensus 312 ~~l~~s 317 (1398)
....|.
T Consensus 306 fgt~f~ 311 (344)
T KOG4532|consen 306 FGTNFN 311 (344)
T ss_pred cccccc
Confidence 666666
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0039 Score=69.84 Aligned_cols=216 Identities=11% Similarity=0.076 Sum_probs=127.6
Q ss_pred CCcEEEEECCCCeEEEEEEeeeC-ccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCccccc
Q 000602 43 GSQVLLYDLEAGTLIRPFQVFHG-IRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVN 121 (1398)
Q Consensus 43 dg~I~Iwd~~tg~~l~~~~~~~~-~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~ 121 (1398)
+++|..||..+|+.+.+...... .......+. .++ .+++...++.+..||..++
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~-------~~~----~v~~~~~~~~l~~~d~~tG-------------- 56 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAVP-------DGG----RVYVASGDGNLYALDAKTG-------------- 56 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE-------ETT----EEEEEETTSEEEEEETTTS--------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEEE-------eCC----EEEEEcCCCEEEEEECCCC--------------
Confidence 58899999999999988865221 112211221 222 5666668999999999763
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEE-ccCC---c-ceEEEEEeecCCCCCcEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPE---R-CLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l-~~~~---~-~~~~s~~~~~~s~d~~~l 196 (1398)
+.+..... .+.+.... .. .+..++++..++.+..+|..+|+.+.+. .... . ....... ..+..+
T Consensus 57 -~~~W~~~~-~~~~~~~~-~~---~~~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~~~-----~~~~~~ 125 (238)
T PF13360_consen 57 -KVLWRFDL-PGPISGAP-VV---DGGRVYVGTSDGSLYALDAKTGKVLWSIYLTSSPPAGVRSSSSPA-----VDGDRL 125 (238)
T ss_dssp -EEEEEEEC-SSCGGSGE-EE---ETTEEEEEETTSEEEEEETTTSCEEEEEEE-SSCTCSTB--SEEE-----EETTEE
T ss_pred -CEEEEeec-ccccccee-ee---cccccccccceeeeEecccCCcceeeeeccccccccccccccCce-----EecCEE
Confidence 33322221 11111111 22 4455667778899999999999998874 3221 1 0111121 136788
Q ss_pred EEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCC----------EEEEEEcC
Q 000602 197 ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS----------IFRIEWSS 266 (1398)
Q Consensus 197 asgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~----------I~~vafsp 266 (1398)
+.+..++.|..+|+. +++.+......... +..-....
T Consensus 126 ~~~~~~g~l~~~d~~---------------------------------tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (238)
T PF13360_consen 126 YVGTSSGKLVALDPK---------------------------------TGKLLWKYPVGEPRGSSPISSFSDINGSPVIS 172 (238)
T ss_dssp EEEETCSEEEEEETT---------------------------------TTEEEEEEESSTT-SS--EEEETTEEEEEECC
T ss_pred EEEeccCcEEEEecC---------------------------------CCcEEEEeecCCCCCCcceeeecccccceEEE
Confidence 888889999999988 34444444332211 22222223
Q ss_pred CCCEEEEEECCCe-EEEEEcCCCcccCCCCceEeeeeEEecCCccEEE-EEEcCCEEEEEeCCCcEEEEcC-CCceEE
Q 000602 267 CGSKLVSVSDDRS-ARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLTDSFIITAGEDCTCRVWGS-DGKQLK 341 (1398)
Q Consensus 267 dg~~LaS~s~Dg~-V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~-l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~ 341 (1398)
++ .+..++.++. +.+ |+.+++. ........+.. ....+..|+.++.++.+..||+ +|+.+.
T Consensus 173 ~~-~v~~~~~~g~~~~~-d~~tg~~------------~w~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~d~~tG~~~W 236 (238)
T PF13360_consen 173 DG-RVYVSSGDGRVVAV-DLATGEK------------LWSKPISGIYSLPSVDGGTLYVTSSDGRLYALDLKTGKVVW 236 (238)
T ss_dssp TT-EEEEECCTSSEEEE-ETTTTEE------------EEEECSS-ECECEECCCTEEEEEETTTEEEEEETTTTEEEE
T ss_pred CC-EEEEEcCCCeEEEE-ECCCCCE------------EEEecCCCccCCceeeCCEEEEEeCCCEEEEEECCCCCEEe
Confidence 44 6666666664 555 9988764 11111222333 3445788888889999999999 777654
|
... |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.97 E-value=0.00046 Score=83.56 Aligned_cols=107 Identities=13% Similarity=0.183 Sum_probs=74.7
Q ss_pred EEEEEecCCCCCCCCEEEEEe-----CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-Ec
Q 000602 22 ALCFVHLPSHLSSLPFLLAGS-----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FG 95 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaag~-----dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~g 95 (1398)
-..|+ |. ..++|+++ +|.|.||- ++|++-....- ..++.+++|+ |.- .+|+. ++
T Consensus 20 i~SWH--Ps----ePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~--P~hatSLCWH-------pe~----~vLa~gwe 79 (1416)
T KOG3617|consen 20 ISSWH--PS----EPLFAVASFSPERGGSVTIFA-DTGEPQRDVTY--PVHATSLCWH-------PEE----FVLAQGWE 79 (1416)
T ss_pred ccccC--CC----CceeEEEEecCCCCceEEEEe-cCCCCCccccc--ceehhhhccC-------hHH----HHHhhccc
Confidence 34555 65 56777654 48899985 56665433321 1245678999 652 34444 34
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC
Q 000602 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 96 d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
-+.+.+|...+. +.......|+.+|..+.||| +|..|+|+..-|.|.+|....
T Consensus 80 ~g~~~v~~~~~~---------------e~htv~~th~a~i~~l~wS~---~G~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 80 MGVSDVQKTNTT---------------ETHTVVETHPAPIQGLDWSH---DGTVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred cceeEEEecCCc---------------eeeeeccCCCCCceeEEecC---CCCeEEEcCCCceeEEEEeee
Confidence 688999988752 23334457999999999999 999999999999999998863
|
|
| >PRK11138 outer membrane biogenesis protein BamB; Provisional | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.0032 Score=76.53 Aligned_cols=261 Identities=10% Similarity=0.050 Sum_probs=146.1
Q ss_pred EEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCC
Q 000602 37 FLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQ 115 (1398)
Q Consensus 37 lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~ 115 (1398)
.+..+. ++.|..+|.++|+.+.+.+.. + .+.+--.- .++ .+++..+++.+.-+|.+++.
T Consensus 122 ~v~v~~~~g~l~ald~~tG~~~W~~~~~-~-~~~ssP~v-------~~~----~v~v~~~~g~l~ald~~tG~------- 181 (394)
T PRK11138 122 KVYIGSEKGQVYALNAEDGEVAWQTKVA-G-EALSRPVV-------SDG----LVLVHTSNGMLQALNESDGA------- 181 (394)
T ss_pred EEEEEcCCCEEEEEECCCCCCcccccCC-C-ceecCCEE-------ECC----EEEEECCCCEEEEEEccCCC-------
Confidence 444454 799999999999998877642 2 22211001 232 56666668889999988633
Q ss_pred CcccccceeeeecccCCCcEEEE--EEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc--CCcce----EEEEEee
Q 000602 116 PETCVNLSLVQSLPRLSHWVFDV--CFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS--PERCL----LYSMKLW 187 (1398)
Q Consensus 116 ~~~~~~~~~~~~l~~h~~~V~~v--~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~--~~~~~----~~s~~~~ 187 (1398)
.+...... .+...+ .-+|.- .+..++.++.++.+..+|..+|+.+.+... +.... ...+...
T Consensus 182 --------~~W~~~~~-~~~~~~~~~~sP~v-~~~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~~~~~~~~~s 251 (394)
T PRK11138 182 --------VKWTVNLD-VPSLTLRGESAPAT-AFGGAIVGGDNGRVSAVLMEQGQLIWQQRISQPTGATEIDRLVDVDTT 251 (394)
T ss_pred --------EeeeecCC-CCcccccCCCCCEE-ECCEEEEEcCCCEEEEEEccCChhhheeccccCCCccchhcccccCCC
Confidence 22222111 000000 011110 123466677899999999999887655431 11000 0000000
Q ss_pred cCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC
Q 000602 188 GDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267 (1398)
Q Consensus 188 ~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd 267 (1398)
+ ...+..++.++.+|.+...|..+++ .+|... + +....+ ..+
T Consensus 252 P-~v~~~~vy~~~~~g~l~ald~~tG~-----------------------~~W~~~--------~----~~~~~~--~~~ 293 (394)
T PRK11138 252 P-VVVGGVVYALAYNGNLVALDLRSGQ-----------------------IVWKRE--------Y----GSVNDF--AVD 293 (394)
T ss_pred c-EEECCEEEEEEcCCeEEEEECCCCC-----------------------EEEeec--------C----CCccCc--EEE
Confidence 0 0124467777788999999987321 112111 0 011111 124
Q ss_pred CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecc
Q 000602 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1398)
Q Consensus 268 g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h 346 (1398)
+..+..++.++.+...|..+++.. .+ .....+ ....+....+..|+.++.||.+.+.|. +|+.+...+..
T Consensus 294 ~~~vy~~~~~g~l~ald~~tG~~~----W~----~~~~~~-~~~~sp~v~~g~l~v~~~~G~l~~ld~~tG~~~~~~~~~ 364 (394)
T PRK11138 294 GGRIYLVDQNDRVYALDTRGGVEL----WS----QSDLLH-RLLTAPVLYNGYLVVGDSEGYLHWINREDGRFVAQQKVD 364 (394)
T ss_pred CCEEEEEcCCCeEEEEECCCCcEE----Ec----ccccCC-CcccCCEEECCEEEEEeCCCEEEEEECCCCCEEEEEEcC
Confidence 667777888999999999887541 00 000011 112223344788999999999999999 89888777654
Q ss_pred cCccEEE-EEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 347 IGRGIWR-CLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 347 ~~~~V~s-l~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.. .+.+ ..+ .+..|+.++.||.+..+++
T Consensus 365 ~~-~~~s~P~~--~~~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 365 SS-GFLSEPVV--ADDKLLIQARDGTVYAITR 393 (394)
T ss_pred CC-cceeCCEE--ECCEEEEEeCCceEEEEeC
Confidence 33 2332 223 2447888899999888764
|
|
| >KOG4532 consensus WD40-like repeat containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00091 Score=71.60 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=123.9
Q ss_pred EEEEEeec--CCCcEEEEEECCCeEEEEEcCCCeEEEEE-ccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 137 DVCFLKVC--NGNRSLAIGCSDNSIRVWDISNSSIILEV-HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 137 ~v~fsp~~--~dg~~Latgs~Dg~V~vWd~~~~~~~~~l-~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
.+.|-|.+ ....+||.|+.-|...+|...+.+....+ ..+...+...-.. ......+..++.|.++++.++..+
T Consensus 72 g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd~snn~v~~~~r~---cd~~~~~~i~sndht~k~~~~~~~ 148 (344)
T KOG4532|consen 72 GMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCDVSNNDVTLVKRY---CDLKFPLNIASNDHTGKTMVVSGD 148 (344)
T ss_pred cccccchHhhccccEEEeccccceeeeecccCcccceeeecccccchhhhhhh---cccccceeeccCCcceeEEEEecC
Confidence 45555521 13457999999999999999876543322 2222111000000 011224556778888888888711
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccC--CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG--SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK 291 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~--~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~ 291 (1398)
..+.. -|.. .++++++++|++++++.++.+.|..|.+......
T Consensus 149 ------------------------------s~~~~-----~h~~~~~~ns~~~snd~~~~~~Vgds~~Vf~y~id~~sey 193 (344)
T KOG4532|consen 149 ------------------------------SNKFA-----VHNQNLTQNSLHYSNDPSWGSSVGDSRRVFRYAIDDESEY 193 (344)
T ss_pred ------------------------------cccce-----eeccccceeeeEEcCCCceEEEecCCCcceEEEeCCccce
Confidence 01111 2333 2889999999999999999999999999876541
Q ss_pred CCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC--CCceEEE----EecccCccEEEEEEcCCCC--
Q 000602 292 DSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS--DGKQLKM----IKEHIGRGIWRCLYDSLSS-- 361 (1398)
Q Consensus 292 ~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~--~g~~l~~----l~~h~~~~V~sl~~spdg~-- 361 (1398)
+..+ .....+..=.+..|+ ...+|++..||++.|||+ .+.+... -..|.+ ++..+.|++.|.
T Consensus 194 ----~~~~---~~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~sstrp~hnG-a~R~c~Fsl~g~lD 265 (344)
T KOG4532|consen 194 ----IENI---YEAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISSTRPHHNG-AFRVCRFSLYGLLD 265 (344)
T ss_pred ----eeee---EecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcccCCCCCC-ceEEEEecCCCcce
Confidence 2211 223333334566776 579999999999999999 3333322 234666 799999998664
Q ss_pred EEEEEEcCCcEEEEEcC
Q 000602 362 LLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 362 ~latgg~Dg~I~iwdl~ 378 (1398)
+|.-.-.=+.+.+-|++
T Consensus 266 LLf~sEhfs~~hv~D~R 282 (344)
T KOG4532|consen 266 LLFISEHFSRVHVVDTR 282 (344)
T ss_pred EEEEecCcceEEEEEcc
Confidence 44444456688888884
|
|
| >PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.0014 Score=73.39 Aligned_cols=210 Identities=12% Similarity=0.061 Sum_probs=126.8
Q ss_pred CCCcEEEEeCCcCe------e---ccceEEEEEEecCCCCCCCCEEEEE-eCCcEEEEECCCCeEEEEEEeeeCccEEEE
Q 000602 2 GKKDLSEWRLDVGQ------Y---LGEISALCFVHLPSHLSSLPFLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGI 71 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~------h---~~~Vtalafs~~pd~~~~g~lLaag-~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i 71 (1398)
++++|..||+.+|+ . .....+..+. + +.+++++ .++.|..||..+|+.+.++..... +...
T Consensus 1 ~~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~~---~----~~~v~~~~~~~~l~~~d~~tG~~~W~~~~~~~--~~~~ 71 (238)
T PF13360_consen 1 DDGTLSALDPRTGKELWSYDLGPGIGGPVATAVP---D----GGRVYVASGDGNLYALDAKTGKVLWRFDLPGP--ISGA 71 (238)
T ss_dssp -TSEEEEEETTTTEEEEEEECSSSCSSEEETEEE---E----TTEEEEEETTSEEEEEETTTSEEEEEEECSSC--GGSG
T ss_pred CCCEEEEEECCCCCEEEEEECCCCCCCccceEEE---e----CCEEEEEcCCCEEEEEECCCCCEEEEeecccc--ccce
Confidence 47889999998887 1 1222222332 2 3566665 479999999999999988886222 2211
Q ss_pred EEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeec-ccC---CCcEEEEEEEeecCCC
Q 000602 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRL---SHWVFDVCFLKVCNGN 147 (1398)
Q Consensus 72 ~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l-~~h---~~~V~~v~fsp~~~dg 147 (1398)
... .++ .+++...++.+..+|..++. .+... ... ........... ++
T Consensus 72 ~~~-------~~~----~v~v~~~~~~l~~~d~~tG~---------------~~W~~~~~~~~~~~~~~~~~~~~---~~ 122 (238)
T PF13360_consen 72 PVV-------DGG----RVYVGTSDGSLYALDAKTGK---------------VLWSIYLTSSPPAGVRSSSSPAV---DG 122 (238)
T ss_dssp EEE-------ETT----EEEEEETTSEEEEEETTTSC---------------EEEEEEE-SSCTCSTB--SEEEE---ET
T ss_pred eee-------ccc----ccccccceeeeEecccCCcc---------------eeeeeccccccccccccccCceE---ec
Confidence 111 232 56667778899999977633 22221 111 01122333343 56
Q ss_pred cEEEEEECCCeEEEEEcCCCeEEEEEccCCcce----------EEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccc
Q 000602 148 RSLAIGCSDNSIRVWDISNSSIILEVHSPERCL----------LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217 (1398)
Q Consensus 148 ~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~----------~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~ 217 (1398)
..++.+..++.|..+|+.+|+.+.......... ...+. ..++ .++.++.++.+..+|..
T Consensus 123 ~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~v~~~~~~g~~~~~d~~------ 191 (238)
T PF13360_consen 123 DRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPV----ISDG-RVYVSSGDGRVVAVDLA------ 191 (238)
T ss_dssp TEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEE----CCTT-EEEEECCTSSEEEEETT------
T ss_pred CEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceE----EECC-EEEEEcCCCeEEEEECC------
Confidence 788888889999999999999987776533111 11221 1234 77777777754444887
Q ss_pred cCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 218 LLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 218 ~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
+++.+.... ...+..+ ..+++..|+.++.++.+..||+.+++.
T Consensus 192 ---------------------------tg~~~w~~~--~~~~~~~-~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 192 ---------------------------TGEKLWSKP--ISGIYSL-PSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp ---------------------------TTEEEEEEC--SS-ECEC-EECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ---------------------------CCCEEEEec--CCCccCC-ceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 333332222 2222221 346778888888999999999999865
|
... |
| >PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide | Back alignment and domain information |
|---|
Probab=97.92 E-value=2.9e-05 Score=59.88 Aligned_cols=38 Identities=32% Similarity=0.492 Sum_probs=36.0
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEE
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd 163 (1398)
++++.+.+|.+.|++++|+| ++.+|++|+.|++|++||
T Consensus 2 ~~~~~~~~h~~~i~~i~~~~---~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 2 KCVRTFRGHSSSINSIAWSP---DGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEESSSSSEEEEEEET---TSSEEEEEETTSEEEEEE
T ss_pred eEEEEEcCCCCcEEEEEEec---ccccceeeCCCCEEEEEC
Confidence 56788999999999999999 999999999999999997
|
WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g .... |
| >KOG3914 consensus WD repeat protein WDR4 [Function unknown] | Back alignment and domain information |
|---|
Probab=97.89 E-value=0.00013 Score=82.32 Aligned_cols=154 Identities=17% Similarity=0.076 Sum_probs=105.1
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~ 269 (1398)
++.+.+||.+..+....++++..... ..+.+.... -...-+++.|..+..
T Consensus 71 s~~~~llAv~~~~K~~~~f~~~~~~~-----------------------------~~kl~~~~~-v~~~~~ai~~~~~~~ 120 (390)
T KOG3914|consen 71 SDSGRLVAVATSSKQRAVFDYRENPK-----------------------------GAKLLDVSC-VPKRPTAISFIREDT 120 (390)
T ss_pred CCCceEEEEEeCCCceEEEEEecCCC-----------------------------cceeeeEee-cccCcceeeeeeccc
Confidence 56788888888888888888772110 112222221 122223344444333
Q ss_pred E---EEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcC-CCceEEE-
Q 000602 270 K---LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKM- 342 (1398)
Q Consensus 270 ~---LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~-~g~~l~~- 342 (1398)
. .-..++...+.+|....+.+ ....||-..+++++++ +++|+|+..|..|||=.+ ..-.+..
T Consensus 121 sv~v~dkagD~~~~di~s~~~~~~-----------~~~lGhvSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~Iesf 189 (390)
T KOG3914|consen 121 SVLVADKAGDVYSFDILSADSGRC-----------EPILGHVSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESF 189 (390)
T ss_pred eEEEEeecCCceeeeeecccccCc-----------chhhhhhhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhh
Confidence 3 33455666777777665544 3778999999999998 589999999999999877 3333444
Q ss_pred EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc-CCCCccccc
Q 000602 343 IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLE 386 (1398)
Q Consensus 343 l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl-~~~~l~~l~ 386 (1398)
+-||.. -|..++.-++. .|+++|.|+++++||+ +++++.++.
T Consensus 190 clGH~e-FVS~isl~~~~-~LlS~sGD~tlr~Wd~~sgk~L~t~d 232 (390)
T KOG3914|consen 190 CLGHKE-FVSTISLTDNY-LLLSGSGDKTLRLWDITSGKLLDTCD 232 (390)
T ss_pred ccccHh-heeeeeeccCc-eeeecCCCCcEEEEecccCCcccccc
Confidence 456887 59999988654 5899999999999999 567665544
|
|
| >PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0019 Score=70.72 Aligned_cols=201 Identities=13% Similarity=0.158 Sum_probs=114.8
Q ss_pred EEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee------eCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF------HGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~------~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
.-++|| || +.+||.+. .|+|++||+.... +..+... -...|.++.|....... .=. ..+|+.
T Consensus 47 Rkl~WS--pD----~tlLa~a~S~G~i~vfdl~g~~-lf~I~p~~~~~~d~~~Aiagl~Fl~~~~s~-~ws---~ELlvi 115 (282)
T PF15492_consen 47 RKLAWS--PD----CTLLAYAESTGTIRVFDLMGSE-LFVIPPAMSFPGDLSDAIAGLIFLEYKKSA-QWS---YELLVI 115 (282)
T ss_pred eEEEEC--CC----CcEEEEEcCCCeEEEEecccce-eEEcCcccccCCccccceeeeEeecccccc-ccc---eeEEEE
Confidence 578999 99 88998888 6999999987533 3333221 12468888887332110 001 145555
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeec---ccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSL---PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII 170 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l---~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~ 170 (1398)
.=.|.++=|-+..+. ... .+..+.+ ..+...|.++.++| ..++|++|+.... +++.
T Consensus 116 ~Y~G~L~Sy~vs~gt--~q~--------y~e~hsfsf~~~yp~Gi~~~vy~p---~h~LLlVgG~~~~------~~~~-- 174 (282)
T PF15492_consen 116 NYRGQLRSYLVSVGT--NQG--------YQENHSFSFSSHYPHGINSAVYHP---KHRLLLVGGCEQN------QDGM-- 174 (282)
T ss_pred eccceeeeEEEEccc--CCc--------ceeeEEEEecccCCCceeEEEEcC---CCCEEEEeccCCC------CCcc--
Confidence 557777777764321 011 2222332 23577899999999 8888888765332 0000
Q ss_pred EEEccCCcceEEEEEeecCCCCCcEEEEEECCCe------EEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 171 LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE------IIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 171 ~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~------I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
.....+.+.+-++....|....+. ...|+. ..+|.+-
T Consensus 175 ---s~a~~~GLtaWRiL~~~Pyyk~v~-~~~~~~~~~~~~~~~~~~~--------------------------------- 217 (282)
T PF15492_consen 175 ---SKASSCGLTAWRILSDSPYYKQVT-SSEDDITASSKRRGLLRIP--------------------------------- 217 (282)
T ss_pred ---ccccccCceEEEEcCCCCcEEEcc-ccCccccccccccceeecc---------------------------------
Confidence 001122233333333333332222 111111 1112211
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
+.+.......-...|+.+..||||+.||+...+|.|.+|++..-++
T Consensus 218 ~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL~~ 263 (282)
T PF15492_consen 218 SFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSLRL 263 (282)
T ss_pred ceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcchh
Confidence 1111222233567899999999999999999999999999988665
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.82 E-value=0.00029 Score=86.56 Aligned_cols=180 Identities=11% Similarity=0.117 Sum_probs=131.2
Q ss_pred CCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCC
Q 000602 146 GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGN 225 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~ 225 (1398)
++..+..|+-...+..+|+.+.+..+........ +.-++. ++..+.+|...|+|.+-|+.
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~~-v~imR~-----Nnr~lf~G~t~G~V~LrD~~-------------- 205 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKETRTTNVSASG-VTIMRY-----NNRNLFCGDTRGTVFLRDPN-------------- 205 (1118)
T ss_pred CCcceeecchhhheeeeecccceeeeeeeccCCc-eEEEEe-----cCcEEEeecccceEEeecCC--------------
Confidence 3456777888888999999888776655433322 344442 57899999999999999998
Q ss_pred CCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC---------CCeEEEEEcCCCcccCCCCc
Q 000602 226 HAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD---------DRSARIWEVRAEYWKDSDSI 296 (1398)
Q Consensus 226 s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~---------Dg~V~iWd~~~~~~~~~~~~ 296 (1398)
+.+.++++..|++.|..+. -.|+.|++|+. |..|++||++.-+. +
T Consensus 206 -------------------s~~~iht~~aHs~siSDfD--v~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmra-----l 259 (1118)
T KOG1275|consen 206 -------------------SFETIHTFDAHSGSISDFD--VQGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRA-----L 259 (1118)
T ss_pred -------------------cCceeeeeeccccceeeee--ccCCeEEEeecccccccccccchhhhhhhhhhhc-----c
Confidence 7888999999999997654 57899999985 56789999998765 3
Q ss_pred eEeeeeEEecCCccEEEEEEcC---CEEEEEeCCCcEEEEcC---CCceEEEEeccc-CccEEEEEEcCCCCEEEEEEcC
Q 000602 297 EEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS---DGKQLKMIKEHI-GRGIWRCLYDSLSSLLVTAGFD 369 (1398)
Q Consensus 297 ~~i~~~~~~gh~~~V~~l~~s~---~~l~sgs~Dg~i~vWd~---~g~~l~~l~~h~-~~~V~sl~~spdg~~latgg~D 369 (1398)
.++. -+-++ .-+.|.| ..++.++..|.+.+-|. .......+.-+. +..+.++++++++..++.|..+
T Consensus 260 ~PI~-----~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~ 333 (1118)
T KOG1275|consen 260 SPIQ-----FPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHE 333 (1118)
T ss_pred CCcc-----cccCc-hhhhhcccccceEEEEecccceeeccccccCCCccceeEEccCCCcceeEEecCCCceEEEeccc
Confidence 3221 11111 2244443 67888899999999994 233233333222 2249999999999999999999
Q ss_pred CcEEEEEc
Q 000602 370 SAIKVHQF 377 (1398)
Q Consensus 370 g~I~iwdl 377 (1398)
|.|.+|.-
T Consensus 334 g~v~~wa~ 341 (1118)
T KOG1275|consen 334 GHVNLWAD 341 (1118)
T ss_pred CcEeeecC
Confidence 99999984
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=97.79 E-value=1e-05 Score=97.70 Aligned_cols=193 Identities=13% Similarity=0.150 Sum_probs=132.1
Q ss_pred eccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|....||++|+ .+ .+.|+.|. .|.|++|++.+|.......+|.. .|+-|..+ -+| +.+|.++
T Consensus 1100 ~~~~fTc~afs--~~----~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~S-avT~vePs-------~dg---s~~Ltss 1162 (1516)
T KOG1832|consen 1100 ETALFTCIAFS--GG----TNHLAVGSHAGEIKIFNVSSGSMEESVNCHQS-AVTLVEPS-------VDG---STQLTSS 1162 (1516)
T ss_pred cccceeeEEee--cC----CceEEeeeccceEEEEEccCcccccccccccc-cccccccc-------CCc---ceeeeec
Confidence 56778999999 66 79999999 89999999999999999998776 79999888 777 3555554
Q ss_pred c--CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 95 G--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 95 g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
. ..-..+|++..- +...+++. .-.++.|+. .-..-+.|..-..+.+||++++..+.+
T Consensus 1163 s~S~PlsaLW~~~s~--------------~~~~Hsf~----ed~~vkFsn---~~q~r~~gt~~d~a~~YDvqT~~~l~t 1221 (1516)
T KOG1832|consen 1163 SSSSPLSALWDASST--------------GGPRHSFD----EDKAVKFSN---SLQFRALGTEADDALLYDVQTCSPLQT 1221 (1516)
T ss_pred cccCchHHHhccccc--------------cCcccccc----ccceeehhh---hHHHHHhcccccceEEEecccCcHHHH
Confidence 4 346889998741 33344443 235788886 333334455556789999999988777
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l 252 (1398)
+..+....-|+-.+..++|...+|+- || .+||.+ ..+.++.|
T Consensus 1222 ylt~~~~~~y~~n~a~FsP~D~LIln---dG--vLWDvR---------------------------------~~~aIh~F 1263 (1516)
T KOG1832|consen 1222 YLTDTVTSSYSNNLAHFSPCDTLILN---DG--VLWDVR---------------------------------IPEAIHRF 1263 (1516)
T ss_pred hcCcchhhhhhccccccCCCcceEee---Cc--eeeeec---------------------------------cHHHHhhh
Confidence 54444333444444455787777763 23 578887 23344444
Q ss_pred eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 253 ~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
...+..+. =.|+|.|..++.-+. |||+++-+.
T Consensus 1264 D~ft~~~~-G~FHP~g~eVIINSE-----IwD~RTF~l 1295 (1516)
T KOG1832|consen 1264 DQFTDYGG-GGFHPSGNEVIINSE-----IWDMRTFKL 1295 (1516)
T ss_pred hhheeccc-ccccCCCceEEeech-----hhhhHHHHH
Confidence 43332222 248999998888654 899998655
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.0099 Score=67.18 Aligned_cols=198 Identities=13% Similarity=0.087 Sum_probs=119.9
Q ss_pred EEEEEEEeecCCCcEEEEEECCCe-EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC-----CCeEEEE
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI-----YNEIIVW 208 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~-V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~-----dg~I~vW 208 (1398)
...++.+| .....++.+-.-|+ ..+||..+++....+..+...-.|--.. +++||.+|++.-. .|.|-||
T Consensus 7 gH~~a~~p--~~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~--fs~dG~~LytTEnd~~~g~G~IgVy 82 (305)
T PF07433_consen 7 GHGVAAHP--TRPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGV--FSPDGRLLYTTENDYETGRGVIGVY 82 (305)
T ss_pred ccceeeCC--CCCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEE--EcCCCCEEEEeccccCCCcEEEEEE
Confidence 34677777 24456666666554 6789999999998888776655554322 2789999998643 4789999
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-------CCe--
Q 000602 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-------DRS-- 279 (1398)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-------Dg~-- 279 (1398)
|.. ...+.+..+..|.-.-..+.+.|||+.|+.+-. .|.
T Consensus 83 d~~--------------------------------~~~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd~GR~k 130 (305)
T PF07433_consen 83 DAA--------------------------------RGYRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPDSGRAK 130 (305)
T ss_pred ECc--------------------------------CCcEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcccCcee
Confidence 987 256677788888777788899999988776532 122
Q ss_pred ---------EEEEEcCCCcccCCCCceEeeeeEE--ecCCccEEEEEEcC-CEEEEEe-CCCc-------EEEEcCCCce
Q 000602 280 ---------ARIWEVRAEYWKDSDSIEEVGSSVL--YGHNARVWDCCLTD-SFIITAG-EDCT-------CRVWGSDGKQ 339 (1398)
Q Consensus 280 ---------V~iWd~~~~~~~~~~~~~~i~~~~~--~gh~~~V~~l~~s~-~~l~sgs-~Dg~-------i~vWd~~g~~ 339 (1398)
+..-|..+++. +.. ..+ .-|...|..+++.+ ..++.|. ..|. +-+++. ++.
T Consensus 131 LNl~tM~psL~~ld~~sG~l-----l~q---~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q~qg~~~~~~PLva~~~~-g~~ 201 (305)
T PF07433_consen 131 LNLDTMQPSLVYLDARSGAL-----LEQ---VELPPDLHQLSIRHLAVDGDGTVAFAMQYQGDPGDAPPLVALHRR-GGA 201 (305)
T ss_pred cChhhcCCceEEEecCCCce-----eee---eecCccccccceeeEEecCCCcEEEEEecCCCCCccCCeEEEEcC-CCc
Confidence 22333333332 221 123 23555666666652 2222222 1111 222222 111
Q ss_pred EEEEec-------ccCccEEEEEEcCCCCEE-EEEEcCCcEEEEEcC
Q 000602 340 LKMIKE-------HIGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 340 l~~l~~-------h~~~~V~sl~~spdg~~l-atgg~Dg~I~iwdl~ 378 (1398)
+..+.. -.+ -|-+|++++++.++ +|+-.-+.+.+||..
T Consensus 202 ~~~~~~p~~~~~~l~~-Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~ 247 (305)
T PF07433_consen 202 LRLLPAPEEQWRRLNG-YIGSIAADRDGRLIAVTSPRGGRVAVWDAA 247 (305)
T ss_pred ceeccCChHHHHhhCC-ceEEEEEeCCCCEEEEECCCCCEEEEEECC
Confidence 221111 123 37799999999866 556678899999984
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.66 E-value=0.17 Score=56.98 Aligned_cols=211 Identities=13% Similarity=0.032 Sum_probs=123.9
Q ss_pred eEEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEE-eecCCCcEEEEEECCCeEEEEEcCC
Q 000602 89 FEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL-KVCNGNRSLAIGCSDNSIRVWDISN 166 (1398)
Q Consensus 89 ~~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs-p~~~dg~~Latgs~Dg~V~vWd~~~ 166 (1398)
.++.+-- .+.|..|+..... .....+.+ ...+++. + ++. |+.+...+ +.++|..+
T Consensus 13 ~l~~~D~~~~~i~~~~~~~~~--------------~~~~~~~~----~~G~~~~~~---~g~-l~v~~~~~-~~~~d~~~ 69 (246)
T PF08450_consen 13 RLYWVDIPGGRIYRVDPDTGE--------------VEVIDLPG----PNGMAFDRP---DGR-LYVADSGG-IAVVDPDT 69 (246)
T ss_dssp EEEEEETTTTEEEEEETTTTE--------------EEEEESSS----EEEEEEECT---TSE-EEEEETTC-EEEEETTT
T ss_pred EEEEEEcCCCEEEEEECCCCe--------------EEEEecCC----CceEEEEcc---CCE-EEEEEcCc-eEEEecCC
Confidence 4555543 7888888887522 11222222 7788888 5 555 55555544 56669988
Q ss_pred CeEEEEEcc---C-CcceEEEEEeecCCCCCcEEEEEECC--------CeEEEEEcccCCccccCCCCCCCCCCCCCCCc
Q 000602 167 SSIILEVHS---P-ERCLLYSMKLWGDNLEALRIASGTIY--------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF 234 (1398)
Q Consensus 167 ~~~~~~l~~---~-~~~~~~s~~~~~~s~d~~~lasgs~d--------g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~ 234 (1398)
++....... . .......+.+ .++|.+.++.... |.|..++..
T Consensus 70 g~~~~~~~~~~~~~~~~~~ND~~v---d~~G~ly~t~~~~~~~~~~~~g~v~~~~~~----------------------- 123 (246)
T PF08450_consen 70 GKVTVLADLPDGGVPFNRPNDVAV---DPDGNLYVTDSGGGGASGIDPGSVYRIDPD----------------------- 123 (246)
T ss_dssp TEEEEEEEEETTCSCTEEEEEEEE----TTS-EEEEEECCBCTTCGGSEEEEEEETT-----------------------
T ss_pred CcEEEEeeccCCCcccCCCceEEE---cCCCCEEEEecCCCccccccccceEEECCC-----------------------
Confidence 865433332 1 2333445555 6777766665433 334444433
Q ss_pred ceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcccCCCCceEeee-eEEecCCccEE
Q 000602 235 KCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVW 312 (1398)
Q Consensus 235 ~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~La-S~s~Dg~V~iWd~~~~~~~~~~~~~~i~~-~~~~gh~~~V~ 312 (1398)
++ +..+...-...+.|+|+||++.|+ +-+..+.|..+++...... +..... ..+..-....-
T Consensus 124 -----------~~-~~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~----~~~~~~~~~~~~~~g~pD 187 (246)
T PF08450_consen 124 -----------GK-VTVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGE----LSNRRVFIDFPGGPGYPD 187 (246)
T ss_dssp -----------SE-EEEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCC----EEEEEEEEE-SSSSCEEE
T ss_pred -----------Ce-EEEEecCcccccceEECCcchheeecccccceeEEEeccccccc----eeeeeeEEEcCCCCcCCC
Confidence 11 222223356679999999998765 5667888888888643320 111110 01122223467
Q ss_pred EEEEc--CCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEE-cCCCCEEEE
Q 000602 313 DCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLVT 365 (1398)
Q Consensus 313 ~l~~s--~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~-spdg~~lat 365 (1398)
.+++. +++.++....+.|.+++.+|+.+..+..... .+++++| -++.+.|..
T Consensus 188 G~~vD~~G~l~va~~~~~~I~~~~p~G~~~~~i~~p~~-~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 188 GLAVDSDGNLWVADWGGGRIVVFDPDGKLLREIELPVP-RPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEEBTTS-EEEEEETTTEEEEEETTSCEEEEEE-SSS-SEEEEEEESTTSSEEEE
T ss_pred cceEcCCCCEEEEEcCCCEEEEECCCccEEEEEcCCCC-CEEEEEEECCCCCEEEE
Confidence 78887 5666666678999999999999988887744 5999999 466555443
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.00023 Score=78.56 Aligned_cols=168 Identities=14% Similarity=0.168 Sum_probs=112.1
Q ss_pred EEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC--
Q 000602 90 EVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-- 167 (1398)
Q Consensus 90 ~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~-- 167 (1398)
.++++.+..|-+-+++++. .+.+. ..+.|.++.|.. .+.++..|...|.|..+|++.+
T Consensus 227 hfs~G~sqqv~L~nvetg~----------------~qsf~-sksDVfAlQf~~---s~nLv~~GcRngeI~~iDLR~rnq 286 (425)
T KOG2695|consen 227 HFSVGLSQQVLLTNVETGH----------------QQSFQ-SKSDVFALQFAG---SDNLVFNGCRNGEIFVIDLRCRNQ 286 (425)
T ss_pred eecccccceeEEEEeeccc----------------ccccc-cchhHHHHHhcc---cCCeeEecccCCcEEEEEeeeccc
Confidence 3445556777777777532 12222 456788999987 7889999999999999999764
Q ss_pred ---eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccc
Q 000602 168 ---SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244 (1398)
Q Consensus 168 ---~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~ 244 (1398)
.+...+- +.+.+.++....+ ++.+|.+.+.+|.|++||++ ..+
T Consensus 287 G~~~~a~rly--h~Ssvtslq~Lq~--s~q~LmaS~M~gkikLyD~R------------------------------~~K 332 (425)
T KOG2695|consen 287 GNGWCAQRLY--HDSSVTSLQILQF--SQQKLMASDMTGKIKLYDLR------------------------------ATK 332 (425)
T ss_pred CCCcceEEEE--cCcchhhhhhhcc--ccceEeeccCcCceeEeeeh------------------------------hhh
Confidence 2233332 2233455544332 57789999999999999998 111
Q ss_pred ceeEEEEEeCccCCEEEE--EEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc
Q 000602 245 TAVNLFRLVGHEGSIFRI--EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~v--afspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s 317 (1398)
.++.+..+.||...-.-+ ...+....++++++|...|||.++.+.. +..+. .........+++++|.
T Consensus 333 ~~~~V~qYeGHvN~~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghL-----l~tip-f~~s~~e~d~~sv~~~ 401 (425)
T KOG2695|consen 333 CKKSVMQYEGHVNLSAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHL-----LCTIP-FPYSASEVDIPSVAFD 401 (425)
T ss_pred cccceeeeecccccccccccccccccceEEEccCeeEEEEEecccCce-----eeccC-CCCccccccccceehh
Confidence 333477888886543333 3346678899999999999999998876 33332 1223334467777776
|
|
| >PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.024 Score=64.18 Aligned_cols=207 Identities=11% Similarity=0.128 Sum_probs=121.4
Q ss_pred eEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEE-EEEEeccccccCCCCccceeEEEEEc-
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLH-GISCNFINCTEGSVSTRVTFEVALFG- 95 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~-~i~fs~~~~~~~pdg~~~~~~la~~g- 95 (1398)
..+++.+ |+ ....++.+- +....+||+.+++.++.+...++..-+ .-.|| ||| .+|.+..
T Consensus 7 gH~~a~~--p~---~~~avafaRRPG~~~~v~D~~~g~~~~~~~a~~gRHFyGHg~fs-------~dG----~~LytTEn 70 (305)
T PF07433_consen 7 GHGVAAH--PT---RPEAVAFARRPGTFALVFDCRTGQLLQRLWAPPGRHFYGHGVFS-------PDG----RLLYTTEN 70 (305)
T ss_pred ccceeeC--CC---CCeEEEEEeCCCcEEEEEEcCCCceeeEEcCCCCCEEecCEEEc-------CCC----CEEEEecc
Confidence 3467777 74 245566665 678999999999998877654331111 34588 999 4444432
Q ss_pred -----CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC---------------
Q 000602 96 -----EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--------------- 155 (1398)
Q Consensus 96 -----d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~--------------- 155 (1398)
.|.|-|||... .++.+..+..|.-.-..+.+.| ||+.|+++-.
T Consensus 71 d~~~g~G~IgVyd~~~--------------~~~ri~E~~s~GIGPHel~l~p---DG~tLvVANGGI~Thpd~GR~kLNl 133 (305)
T PF07433_consen 71 DYETGRGVIGVYDAAR--------------GYRRIGEFPSHGIGPHELLLMP---DGETLVVANGGIETHPDSGRAKLNL 133 (305)
T ss_pred ccCCCcEEEEEEECcC--------------CcEEEeEecCCCcChhhEEEcC---CCCEEEEEcCCCccCcccCceecCh
Confidence 47899999983 1667777777776778889999 9988877631
Q ss_pred ---CCeEEEEEcCCCeEEEEEccCC---cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCC
Q 000602 156 ---DNSIRVWDISNSSIILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG 229 (1398)
Q Consensus 156 ---Dg~V~vWd~~~~~~~~~l~~~~---~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~ 229 (1398)
+.++.+.|..+|+.+.+..-+. .-.+..+++ ..++..++..-..|.- ....|.
T Consensus 134 ~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~---~~~G~V~~a~Q~qg~~-------~~~~PL----------- 192 (305)
T PF07433_consen 134 DTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAV---DGDGTVAFAMQYQGDP-------GDAPPL----------- 192 (305)
T ss_pred hhcCCceEEEecCCCceeeeeecCccccccceeeEEe---cCCCcEEEEEecCCCC-------CccCCe-----------
Confidence 2245555666676665544322 111222332 3444433332211110 000000
Q ss_pred CCCCcceeeecccccceeEEEE-------EeCccCCEEEEEEcCCCCEE-EEEECCCeEEEEEcCCCcc
Q 000602 230 SSSDFKCFKLQDQQHTAVNLFR-------LVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 230 ~~~~~~~i~i~~~~~~~~~~~~-------l~gH~~~I~~vafspdg~~L-aS~s~Dg~V~iWd~~~~~~ 290 (1398)
+-++. .+..+.. ...-.+.|-+|++++++..+ +|+-.-+.+.+||..+++.
T Consensus 193 -------va~~~---~g~~~~~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~ 251 (305)
T PF07433_consen 193 -------VALHR---RGGALRLLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRL 251 (305)
T ss_pred -------EEEEc---CCCcceeccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCE
Confidence 00000 0111111 12234778999999999877 5555778999999999876
|
|
| >KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.1 Score=56.17 Aligned_cols=69 Identities=10% Similarity=0.084 Sum_probs=50.5
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC--cceEEEEEeecCCCCCcEEEEEECCCeEEEEEc
Q 000602 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE--RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKV 210 (1398)
Q Consensus 133 ~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~--~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~ 210 (1398)
++|.+-+.- -|++++.|...|.+.+.+..+|.....+..-+ ++... + .+++.++..|+.|++.+..|+
T Consensus 53 ~RiE~sa~v----vgdfVV~GCy~g~lYfl~~~tGs~~w~f~~~~~vk~~a~-~-----d~~~glIycgshd~~~yalD~ 122 (354)
T KOG4649|consen 53 VRIECSAIV----VGDFVVLGCYSGGLYFLCVKTGSQIWNFVILETVKVRAQ-C-----DFDGGLIYCGSHDGNFYALDP 122 (354)
T ss_pred ceeeeeeEE----ECCEEEEEEccCcEEEEEecchhheeeeeehhhhccceE-E-----cCCCceEEEecCCCcEEEecc
Confidence 445544444 35679999999999999999997766554222 22111 1 568899999999999999998
Q ss_pred c
Q 000602 211 D 211 (1398)
Q Consensus 211 ~ 211 (1398)
.
T Consensus 123 ~ 123 (354)
T KOG4649|consen 123 K 123 (354)
T ss_pred c
Confidence 8
|
|
| >PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.23 Score=56.07 Aligned_cols=217 Identities=9% Similarity=0.071 Sum_probs=128.1
Q ss_pred EEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEE
Q 000602 22 ALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVK 100 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~ 100 (1398)
+.+|. +. .+.++++.. ++.|..||..+++... +.. . ...++++.. +++ .++++. .+.+.
T Consensus 4 gp~~d--~~---~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~--~-~~~G~~~~~------~~g----~l~v~~-~~~~~ 63 (246)
T PF08450_consen 4 GPVWD--PR---DGRLYWVDIPGGRIYRVDPDTGEVEV-IDL--P-GPNGMAFDR------PDG----RLYVAD-SGGIA 63 (246)
T ss_dssp EEEEE--TT---TTEEEEEETTTTEEEEEETTTTEEEE-EES--S-SEEEEEEEC------TTS----EEEEEE-TTCEE
T ss_pred ceEEE--CC---CCEEEEEEcCCCEEEEEECCCCeEEE-Eec--C-CCceEEEEc------cCC----EEEEEE-cCceE
Confidence 45666 63 256666665 6999999998876532 221 2 267777761 344 455554 45556
Q ss_pred EEEecCCCCCCCCCCCcccccceeeeecc--c-CCCcEEEEEEEeecCCCcEEEEEECC--------CeEEEEEcCCCeE
Q 000602 101 LFELNFELSPNSQYQPETCVNLSLVQSLP--R-LSHWVFDVCFLKVCNGNRSLAIGCSD--------NSIRVWDISNSSI 169 (1398)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~~~~~~~~~l~--~-h~~~V~~v~fsp~~~dg~~Latgs~D--------g~V~vWd~~~~~~ 169 (1398)
++|+.+.. .+.+.... . .....+++++.| +|.+.++.... +.|..++.. ++.
T Consensus 64 ~~d~~~g~-------------~~~~~~~~~~~~~~~~~ND~~vd~---~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~ 126 (246)
T PF08450_consen 64 VVDPDTGK-------------VTVLADLPDGGVPFNRPNDVAVDP---DGNLYVTDSGGGGASGIDPGSVYRIDPD-GKV 126 (246)
T ss_dssp EEETTTTE-------------EEEEEEEETTCSCTEEEEEEEE-T---TS-EEEEEECCBCTTCGGSEEEEEEETT-SEE
T ss_pred EEecCCCc-------------EEEEeeccCCCcccCCCceEEEcC---CCCEEEEecCCCccccccccceEEECCC-CeE
Confidence 66877532 33333332 2 345789999999 99977665543 457777776 443
Q ss_pred EEEEccCCcceEEEEEeecCCCCCcEEE-EEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeE
Q 000602 170 ILEVHSPERCLLYSMKLWGDNLEALRIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 170 ~~~l~~~~~~~~~s~~~~~~s~d~~~la-sgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
......- .....+++ ++++..|+ +-+..+.|..+++....... .....
T Consensus 127 ~~~~~~~--~~pNGi~~---s~dg~~lyv~ds~~~~i~~~~~~~~~~~~--------------------------~~~~~ 175 (246)
T PF08450_consen 127 TVVADGL--GFPNGIAF---SPDGKTLYVADSFNGRIWRFDLDADGGEL--------------------------SNRRV 175 (246)
T ss_dssp EEEEEEE--SSEEEEEE---ETTSSEEEEEETTTTEEEEEEEETTTCCE--------------------------EEEEE
T ss_pred EEEecCc--ccccceEE---CCcchheeecccccceeEEEeccccccce--------------------------eeeee
Confidence 3322221 12334555 67887665 56677888888886111000 01122
Q ss_pred EEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317 (1398)
Q Consensus 249 ~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s 317 (1398)
+..+..-.+..-.+++..+|++.++....+.|.+++.. ++. +. .+.-....+++++|.
T Consensus 176 ~~~~~~~~g~pDG~~vD~~G~l~va~~~~~~I~~~~p~-G~~-----~~-----~i~~p~~~~t~~~fg 233 (246)
T PF08450_consen 176 FIDFPGGPGYPDGLAVDSDGNLWVADWGGGRIVVFDPD-GKL-----LR-----EIELPVPRPTNCAFG 233 (246)
T ss_dssp EEE-SSSSCEEEEEEEBTTS-EEEEEETTTEEEEEETT-SCE-----EE-----EEE-SSSSEEEEEEE
T ss_pred EEEcCCCCcCCCcceEcCCCCEEEEEcCCCEEEEECCC-ccE-----EE-----EEcCCCCCEEEEEEE
Confidence 33333333458899999999998888889999999987 444 23 222224588999995
|
These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A .... |
| >KOG2695 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.40 E-value=0.00057 Score=75.54 Aligned_cols=125 Identities=7% Similarity=0.110 Sum_probs=94.8
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEE---EcCCEEEEEeCCCcEE
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC---LTDSFIITAGEDCTCR 331 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~---~s~~~l~sgs~Dg~i~ 331 (1398)
-.+.|+++.|...++.+..|...|.|...|++....-...+ ....-|...|+++. |++++|++.+.+|+|.
T Consensus 251 sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~------a~rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkik 324 (425)
T KOG2695|consen 251 SKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWC------AQRLYHDSSVTSLQILQFSQQKLMASDMTGKIK 324 (425)
T ss_pred cchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcc------eEEEEcCcchhhhhhhccccceEeeccCcCcee
Confidence 46789999999989999999999999999999874421111 35566888888865 4578999999999999
Q ss_pred EEcC-CCce---EEEEecccCccEEEE--EEcCCCCEEEEEEcCCcEEEEEcC-CCCccccc
Q 000602 332 VWGS-DGKQ---LKMIKEHIGRGIWRC--LYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLE 386 (1398)
Q Consensus 332 vWd~-~g~~---l~~l~~h~~~~V~sl--~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~ 386 (1398)
+||. -.++ +.++.+|-.. -.-+ -+.+....++++|.|...|||.++ +.++.+++
T Consensus 325 LyD~R~~K~~~~V~qYeGHvN~-~a~l~~~v~~eeg~I~s~GdDcytRiWsl~~ghLl~tip 385 (425)
T KOG2695|consen 325 LYDLRATKCKKSVMQYEGHVNL-SAYLPAHVKEEEGSIFSVGDDCYTRIWSLDSGHLLCTIP 385 (425)
T ss_pred Eeeehhhhcccceeeeeccccc-ccccccccccccceEEEccCeeEEEEEecccCceeeccC
Confidence 9998 3344 8888888652 2222 245666789999999999999994 55554443
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.018 Score=69.95 Aligned_cols=163 Identities=14% Similarity=0.165 Sum_probs=104.4
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
...|.=-++.. .+++++.|+.-|.+.+|+-..++....-............+ +++..++|+|+..|.|.++-+.
T Consensus 33 ~~~v~lTc~ds---t~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~~~~~~~v---s~~e~lvAagt~~g~V~v~ql~ 106 (726)
T KOG3621|consen 33 PARVKLTCVDA---TEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATGITCVRSV---SSVEYLVAAGTASGRVSVFQLN 106 (726)
T ss_pred cceEEEEEeec---CCceEEEecccceEEEEecCchhhhcccccCccceEEEEEe---cchhHhhhhhcCCceEEeehhh
Confidence 34454445555 78999999999999999987765543322222222222223 6678889999999999999887
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE-eCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcc
Q 000602 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l-~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
. ...+ ....+..+ ..|...|++++|++++..+.+|...|.|.+-.+.....
T Consensus 107 ~-~~p~---------------------------~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~ 158 (726)
T KOG3621|consen 107 K-ELPR---------------------------DLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQA 158 (726)
T ss_pred c-cCCC---------------------------cceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhh
Confidence 2 1111 11111111 23889999999999999999999999999988877311
Q ss_pred cCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC
Q 000602 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 291 ~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~ 335 (1398)
-......+..-.+.|..+.+...+|+.+..-. ..+++.
T Consensus 159 ------~~~~~q~il~~ds~IVQlD~~q~~LLVStl~r-~~Lc~t 196 (726)
T KOG3621|consen 159 ------FLSKSQEILSEDSEIVQLDYLQSYLLVSTLTR-CILCQT 196 (726)
T ss_pred ------hccccceeeccCcceEEeecccceehHhhhhh-hheeec
Confidence 00011245556678888888765555444332 334555
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.025 Score=68.83 Aligned_cols=192 Identities=11% Similarity=0.072 Sum_probs=109.5
Q ss_pred cceEEEEEEecCCCCCCCC-EEEEEe----CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE
Q 000602 18 GEISALCFVHLPSHLSSLP-FLLAGS----GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA 92 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~-lLaag~----dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la 92 (1398)
+.+..-.|+ || |+ +++..+ .+.|.++|+.+++...... ..+ ......|+ |||+ .++.
T Consensus 188 ~~~~~p~wS--pD----G~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g-~~~~~~~S-------PDG~---~la~ 249 (419)
T PRK04043 188 GLNIFPKWA--NK----EQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQG-MLVVSDVS-------KDGS---KLLL 249 (419)
T ss_pred CCeEeEEEC--CC----CCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCC-cEEeeEEC-------CCCC---EEEE
Confidence 456788999 99 66 355432 2679999999887643332 333 45567799 9984 3333
Q ss_pred EEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CC--eEEEEEcCC
Q 000602 93 LFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISN 166 (1398)
Q Consensus 93 ~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg--~V~vWd~~~ 166 (1398)
+.. +..|.++++.... .+. +..+........|+| ||+.|+-.+. .+ .|.+.|+.+
T Consensus 250 ~~~~~g~~~Iy~~dl~~g~-------------~~~---LT~~~~~d~~p~~SP---DG~~I~F~Sdr~g~~~Iy~~dl~~ 310 (419)
T PRK04043 250 TMAPKGQPDIYLYDTNTKT-------------LTQ---ITNYPGIDVNGNFVE---DDKRIVFVSDRLGYPNIFMKKLNS 310 (419)
T ss_pred EEccCCCcEEEEEECCCCc-------------EEE---cccCCCccCccEECC---CCCEEEEEECCCCCceEEEEECCC
Confidence 332 3567777775422 222 222222233457999 9987776653 22 678888887
Q ss_pred CeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC---------CeEEEEEcccCCccccCCCCCCCCCCCCCCCccee
Q 000602 167 SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY---------NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF 237 (1398)
Q Consensus 167 ~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d---------g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i 237 (1398)
++.......... ...+ +|++..|+..... ..|.+.|+.
T Consensus 311 g~~~rlt~~g~~----~~~~---SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~-------------------------- 357 (419)
T PRK04043 311 GSVEQVVFHGKN----NSSV---STYKNYIVYSSRETNNEFGKNTFNLYLISTN-------------------------- 357 (419)
T ss_pred CCeEeCccCCCc----CceE---CCCCCEEEEEEcCCCcccCCCCcEEEEEECC--------------------------
Confidence 765332222111 1233 7889988776543 245666655
Q ss_pred eecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-Ce--EEEEEcCCC
Q 000602 238 KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-RS--ARIWEVRAE 288 (1398)
Q Consensus 238 ~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D-g~--V~iWd~~~~ 288 (1398)
.+. ...+... +......|+|||+.++-.+.+ +. +.+.++...
T Consensus 358 -------~g~-~~~LT~~-~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 358 -------SDY-IRRLTAN-GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred -------CCC-eEECCCC-CCcCCeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 111 1222222 223357899999987665543 23 445555443
|
|
| >PRK04043 tolB translocation protein TolB; Provisional | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.079 Score=64.57 Aligned_cols=190 Identities=9% Similarity=0.096 Sum_probs=108.4
Q ss_pred cEEEEEEEeecCCCcE-EEEEEC---CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEE-EECC--CeEE
Q 000602 134 WVFDVCFLKVCNGNRS-LAIGCS---DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS-GTIY--NEII 206 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~-Latgs~---Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~las-gs~d--g~I~ 206 (1398)
.+..-.|+| ||+. ++..+. +..|.++|+.+++...-.... .......| +||+..|+. .+.+ ..|.
T Consensus 189 ~~~~p~wSp---DG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~~~--g~~~~~~~---SPDG~~la~~~~~~g~~~Iy 260 (419)
T PRK04043 189 LNIFPKWAN---KEQTAFYYTSYGERKPTLYKYNLYTGKKEKIASSQ--GMLVVSDV---SKDGSKLLLTMAPKGQPDIY 260 (419)
T ss_pred CeEeEEECC---CCCcEEEEEEccCCCCEEEEEECCCCcEEEEecCC--CcEEeeEE---CCCCCEEEEEEccCCCcEEE
Confidence 678899999 9984 654433 356889999888654433322 12233444 788876654 3334 4566
Q ss_pred EEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CC--eEEEE
Q 000602 207 VWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DR--SARIW 283 (1398)
Q Consensus 207 vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg--~V~iW 283 (1398)
++++. .+. ...+..+.+......|+|||+.|+-.+. .+ .|.+.
T Consensus 261 ~~dl~---------------------------------~g~-~~~LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~ 306 (419)
T PRK04043 261 LYDTN---------------------------------TKT-LTQITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMK 306 (419)
T ss_pred EEECC---------------------------------CCc-EEEcccCCCccCccEECCCCCEEEEEECCCCCceEEEE
Confidence 66765 222 2233334333345579999998877664 33 56677
Q ss_pred EcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---------CcEEEEcCCCceEEEEecccCccEE
Q 000602 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---------CTCRVWGSDGKQLKMIKEHIGRGIW 352 (1398)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---------g~i~vWd~~g~~l~~l~~h~~~~V~ 352 (1398)
|+.+++. +.+ +..+.. ...|+ ++.|+..... ..|.+.|+.+.....+..... ..
T Consensus 307 dl~~g~~------~rl---t~~g~~----~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~LT~~~~--~~ 371 (419)
T PRK04043 307 KLNSGSV------EQV---VFHGKN----NSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRLTANGV--NQ 371 (419)
T ss_pred ECCCCCe------EeC---ccCCCc----CceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEECCCCCC--cC
Confidence 7766543 111 111221 23566 5666555433 257777884444455544322 33
Q ss_pred EEEEcCCCCEEEEEEcC-C--cEEEEEcCCC
Q 000602 353 RCLYDSLSSLLVTAGFD-S--AIKVHQFQAF 380 (1398)
Q Consensus 353 sl~~spdg~~latgg~D-g--~I~iwdl~~~ 380 (1398)
...|+|||+.|+-...+ + .+.+.++++.
T Consensus 372 ~p~~SPDG~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 372 FPRFSSDGGSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CeEECCCCCEEEEEEccCCcEEEEEEecCCC
Confidence 68899999977665543 3 3555566554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0048 Score=75.66 Aligned_cols=188 Identities=10% Similarity=0.076 Sum_probs=113.6
Q ss_pred CccEEEEEEcCCEEEEEeCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC-CCCccccc
Q 000602 308 NARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGSLE 386 (1398)
Q Consensus 308 ~~~V~~l~~s~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~-~~~l~~l~ 386 (1398)
...+.|+++++.+|+-|..+|.+++.+..+.. .+...|.. . ..+|.+++||+.||+|.|-.+- .....
T Consensus 39 ~D~is~~av~~~~~~~GtH~g~v~~~~~~~~~-~~~~~~s~--~-----~~~Gey~asCS~DGkv~I~sl~~~~~~~--- 107 (846)
T KOG2066|consen 39 NDAISCCAVHDKFFALGTHRGAVYLTTCQGNP-KTNFDHSS--S-----ILEGEYVASCSDDGKVVIGSLFTDDEIT--- 107 (846)
T ss_pred hhHHHHHHhhcceeeeccccceEEEEecCCcc-cccccccc--c-----ccCCceEEEecCCCcEEEeeccCCccce---
Confidence 34577888889999999999999999998876 55545544 1 6689999999999999998872 22111
Q ss_pred CCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecC------CeEEEEEcCCcEEEEEeecCC-CceeEEEE
Q 000602 387 SHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSE------DTLYIATNHGYLYHTKLCDMD-SVNWNKIL 459 (1398)
Q Consensus 387 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~d------g~llv~t~~g~i~~~~l~~~~-~~~w~~i~ 459 (1398)
.++. ..++.+++++|+ +++++++..| ++. +..+ -+.|..+.
T Consensus 108 -------------~~df---------------~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL---~er~wlgnk~~v~ 155 (846)
T KOG2066|consen 108 -------------QYDF---------------KRPIKSIALHPDFSRQQSKQFVSGGMAG-LVL---SERNWLGNKDSVV 155 (846)
T ss_pred -------------eEec---------------CCcceeEEeccchhhhhhhheeecCcce-EEE---ehhhhhcCcccee
Confidence 1111 135788888887 3566666666 553 2221 11233342
Q ss_pred eecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEcCCccccceeeeeeeecCcccceeEEEEEecCCCcEEE
Q 000602 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539 (1398)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~ 539 (1398)
-....++|.++.+. ++++|-++ |--|++||+..++.+..+.... .... ....-...+|.++. .|+
T Consensus 156 l~~~eG~I~~i~W~----------g~lIAWan-d~Gv~vyd~~~~~~l~~i~~p~-~~~R--~e~fpphl~W~~~~-~LV 220 (846)
T KOG2066|consen 156 LSEGEGPIHSIKWR----------GNLIAWAN-DDGVKVYDTPTRQRLTNIPPPS-QSVR--PELFPPHLHWQDED-RLV 220 (846)
T ss_pred eecCccceEEEEec----------CcEEEEec-CCCcEEEeccccceeeccCCCC-CCCC--cccCCCceEecCCC-eEE
Confidence 33345677777553 34455554 5579999998876543322111 0000 01111123455544 444
Q ss_pred EEcCCCcEEEEecCC
Q 000602 540 TADPKGRLKLWQLCD 554 (1398)
Q Consensus 540 s~s~dg~I~iWdi~~ 554 (1398)
.| ...+|++..+..
T Consensus 221 IG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 221 IG-WGDSVKICSIKK 234 (846)
T ss_pred Ee-cCCeEEEEEEec
Confidence 43 455788888873
|
|
| >KOG3621 consensus WD40 repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.02 Score=69.54 Aligned_cols=139 Identities=17% Similarity=0.176 Sum_probs=89.8
Q ss_pred EEEEEcCCEEEEEeCCCcEEEEcCCCceEEEEec--ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCC
Q 000602 312 WDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKE--HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHP 389 (1398)
Q Consensus 312 ~~l~~s~~~l~sgs~Dg~i~vWd~~g~~l~~l~~--h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~ 389 (1398)
+|+.-.+.+++.|+.-|.+.+|+..+.....++. ..+ .+..+.++++..++|.|+..|.|.++.++.....
T Consensus 39 Tc~dst~~~l~~GsS~G~lyl~~R~~~~~~~~~~~~~~~-~~~~~~vs~~e~lvAagt~~g~V~v~ql~~~~p~------ 111 (726)
T KOG3621|consen 39 TCVDATEEYLAMGSSAGSVYLYNRHTGEMRKLKNEGATG-ITCVRSVSSVEYLVAAGTASGRVSVFQLNKELPR------ 111 (726)
T ss_pred EEeecCCceEEEecccceEEEEecCchhhhcccccCccc-eEEEEEecchhHhhhhhcCCceEEeehhhccCCC------
Confidence 4555558999999999999999995554444443 333 3556678888889999999999999988532111
Q ss_pred ccccccCCccEEEeeeCCCccceeecc-CCCCcEEEEEEecCC-eEEEEEcCCcEEEEEeecCCCceeEEEEeecCCccE
Q 000602 390 EAKEFNGRTEIFSIKIPNFSEQIRLTD-SKSEYVRCLHLTSED-TLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPI 467 (1398)
Q Consensus 390 ~~v~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~V~~lafs~dg-~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i 467 (1398)
..++. ...+ .|...|++++|++++ +++.+-..|++....+............-.....+|
T Consensus 112 --------~~~~~----------t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~I 173 (726)
T KOG3621|consen 112 --------DLDYV----------TPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEI 173 (726)
T ss_pred --------cceee----------ccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcce
Confidence 01111 1111 256789999999999 566666789988777654111111111112346678
Q ss_pred EEEeccCC
Q 000602 468 ICMDLLSN 475 (1398)
Q Consensus 468 ~~l~~~~~ 475 (1398)
.-+|....
T Consensus 174 VQlD~~q~ 181 (726)
T KOG3621|consen 174 VQLDYLQS 181 (726)
T ss_pred EEeecccc
Confidence 88877554
|
|
| >KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=97.22 E-value=0.0051 Score=76.09 Aligned_cols=183 Identities=13% Similarity=0.109 Sum_probs=125.0
Q ss_pred CEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCCCCC
Q 000602 36 PFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 36 ~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~~~~ 114 (1398)
.++..|--..+..+|+.+.+..+...+..+ .|.-|+-+ + +.+.++. .|+|.+-|...
T Consensus 149 ~~i~Gg~Q~~li~~Dl~~~~e~r~~~v~a~-~v~imR~N---------n----r~lf~G~t~G~V~LrD~~s-------- 206 (1118)
T KOG1275|consen 149 TLIMGGLQEKLIHIDLNTEKETRTTNVSAS-GVTIMRYN---------N----RNLFCGDTRGTVFLRDPNS-------- 206 (1118)
T ss_pred ceeecchhhheeeeecccceeeeeeeccCC-ceEEEEec---------C----cEEEeecccceEEeecCCc--------
Confidence 333333367889999999988887776544 46666544 2 3443333 69999999885
Q ss_pred CCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC---------CCeEEEEEcCCCeEEEEEccCCcceEEEEE
Q 000602 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS---------DNSIRVWDISNSSIILEVHSPERCLLYSMK 185 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~---------Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~ 185 (1398)
++.++++..|++.|.++.. .|++|+++|. |.-|+|||++..+.+.-+.-+... .-++
T Consensus 207 -------~~~iht~~aHs~siSDfDv-----~GNlLitCG~S~R~~~l~~D~FvkVYDLRmmral~PI~~~~~P--~flr 272 (1118)
T KOG1275|consen 207 -------FETIHTFDAHSGSISDFDV-----QGNLLITCGYSMRRYNLAMDPFVKVYDLRMMRALSPIQFPYGP--QFLR 272 (1118)
T ss_pred -------Cceeeeeeccccceeeeec-----cCCeEEEeecccccccccccchhhhhhhhhhhccCCcccccCc--hhhh
Confidence 7889999999999988877 5678888765 667899999987766544433322 1133
Q ss_pred eecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEc
Q 000602 186 LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWS 265 (1398)
Q Consensus 186 ~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafs 265 (1398)
|++. -...++..+..|+..+-|..+-. .....+..+..-...+.++.++
T Consensus 273 f~Ps--l~t~~~V~S~sGq~q~vd~~~ls-----------------------------NP~~~~~~v~p~~s~i~~fDiS 321 (1118)
T KOG1275|consen 273 FHPS--LTTRLAVTSQSGQFQFVDTATLS-----------------------------NPPAGVKMVNPNGSGISAFDIS 321 (1118)
T ss_pred hccc--ccceEEEEecccceeeccccccC-----------------------------CCccceeEEccCCCcceeEEec
Confidence 4332 24567778888998888843100 0111122233334459999999
Q ss_pred CCCCEEEEEECCCeEEEEEc
Q 000602 266 SCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 266 pdg~~LaS~s~Dg~V~iWd~ 285 (1398)
+++..++.+..+|.|.+|.-
T Consensus 322 sn~~alafgd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 322 SNGDALAFGDHEGHVNLWAD 341 (1118)
T ss_pred CCCceEEEecccCcEeeecC
Confidence 99999999999999999983
|
|
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.49 Score=57.31 Aligned_cols=114 Identities=11% Similarity=0.113 Sum_probs=79.4
Q ss_pred cCCEEEEEEcC-CCCEEEEE----ECCCeE----EEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEE
Q 000602 256 EGSIFRIEWSS-CGSKLVSV----SDDRSA----RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITA 324 (1398)
Q Consensus 256 ~~~I~~vafsp-dg~~LaS~----s~Dg~V----~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sg 324 (1398)
+....++.|+- +...+.|. +.+|.+ .+|+....+ ++.+. .+.....+.|.+++++ ...++.|
T Consensus 205 E~dPl~~~Fs~~~~~qi~tVE~s~s~~g~~~~d~ciYE~~r~k------lqrvs-vtsipL~s~v~~ca~sp~E~kLvlG 277 (545)
T PF11768_consen 205 ENDPLDVEFSLNQPYQIHTVEQSISVKGEPSADSCIYECSRNK------LQRVS-VTSIPLPSQVICCARSPSEDKLVLG 277 (545)
T ss_pred cCCcEEEEccCCCCcEEEEEEEecCCCCCceeEEEEEEeecCc------eeEEE-EEEEecCCcceEEecCcccceEEEE
Confidence 44557777876 33444433 334433 456665543 23333 3555788899999998 4899999
Q ss_pred eCCCcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 325 GEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 325 s~Dg~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
+.||+|.+||...+... +....- ..+.++|+|+|..+++|+.-|.+.+||+.
T Consensus 278 C~DgSiiLyD~~~~~t~-~~ka~~-~P~~iaWHp~gai~~V~s~qGelQ~FD~A 329 (545)
T PF11768_consen 278 CEDGSIILYDTTRGVTL-LAKAEF-IPTLIAWHPDGAIFVVGSEQGELQCFDMA 329 (545)
T ss_pred ecCCeEEEEEcCCCeee-eeeecc-cceEEEEcCCCcEEEEEcCCceEEEEEee
Confidence 99999999998433222 222223 46789999999999999999999999994
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.09 E-value=0.0058 Score=74.95 Aligned_cols=184 Identities=14% Similarity=0.075 Sum_probs=124.6
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
.+.+.|++++. +.|+-|..+|.|++.+..... .+...+... ..+|.++++++.||.|.|-.+.
T Consensus 39 ~D~is~~av~~-----~~~~~GtH~g~v~~~~~~~~~--~~~~~~s~~----------~~~Gey~asCS~DGkv~I~sl~ 101 (846)
T KOG2066|consen 39 NDAISCCAVHD-----KFFALGTHRGAVYLTTCQGNP--KTNFDHSSS----------ILEGEYVASCSDDGKVVIGSLF 101 (846)
T ss_pred hhHHHHHHhhc-----ceeeeccccceEEEEecCCcc--ccccccccc----------ccCCceEEEecCCCcEEEeecc
Confidence 46678888864 889999999999999875432 222122111 4579999999999999998887
Q ss_pred cCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCC-----CCEEEEEECCCeEEEEEcC
Q 000602 212 WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC-----GSKLVSVSDDRSARIWEVR 286 (1398)
Q Consensus 212 ~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspd-----g~~LaS~s~Dg~V~iWd~~ 286 (1398)
+.+....+. ...++.+|+++|+ .+.+++|+.-| +.++.-.
T Consensus 102 ---------------------------------~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 102 ---------------------------------TDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred ---------------------------------CCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 233333332 3578999999997 46799999988 6666432
Q ss_pred CCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCc-----cEEEEEEcCCC
Q 000602 287 AEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-----GIWRCLYDSLS 360 (1398)
Q Consensus 287 ~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~-----~V~sl~~spdg 360 (1398)
=-.. ..+..+..-.+.|.++.|.+++++=++.+| ++|||. .++.+..+...... --..+.|.++.
T Consensus 147 wlgn--------k~~v~l~~~eG~I~~i~W~g~lIAWand~G-v~vyd~~~~~~l~~i~~p~~~~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 147 WLGN--------KDSVVLSEGEGPIHSIKWRGNLIAWANDDG-VKVYDTPTRQRLTNIPPPSQSVRPELFPPHLHWQDED 217 (846)
T ss_pred hhcC--------ccceeeecCccceEEEEecCcEEEEecCCC-cEEEeccccceeeccCCCCCCCCcccCCCceEecCCC
Confidence 1111 000245566789999999999999998777 899999 66666555443321 12345676655
Q ss_pred CEEEEEEcCCcEEEEEcC
Q 000602 361 SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl~ 378 (1398)
+ |+. |.-.+|+|..++
T Consensus 218 ~-LVI-GW~d~v~i~~I~ 233 (846)
T KOG2066|consen 218 R-LVI-GWGDSVKICSIK 233 (846)
T ss_pred e-EEE-ecCCeEEEEEEe
Confidence 4 444 445589998885
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0072 Score=69.29 Aligned_cols=239 Identities=14% Similarity=0.098 Sum_probs=148.1
Q ss_pred eEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CCeEEEEEcCCC
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNS 167 (1398)
Q Consensus 89 ~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg~V~vWd~~~~ 167 (1398)
..+.++=|+.++.|.-..-. -.+.+..+..|...|.+++.+- ++.++.|.+. |..++++|+++-
T Consensus 22 fiiqASlDGh~KFWkKs~is------------GvEfVKhFraHL~~I~sl~~S~---dg~L~~Sv~d~Dhs~KvfDvEn~ 86 (558)
T KOG0882|consen 22 FIIQASLDGHKKFWKKSRIS------------GVEFVKHFRAHLGVILSLAVSY---DGWLFRSVEDPDHSVKVFDVENF 86 (558)
T ss_pred eEEeeecchhhhhcCCCCcc------------ceeehhhhHHHHHHHHhhhccc---cceeEeeccCcccceeEEEeecc
Confidence 34444449999999865411 1456777888999999999998 9999999777 999999999875
Q ss_pred eEEEEEc--cCCcceEEEEEeecCCCCC-cEEEE-EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccc
Q 000602 168 SIILEVH--SPERCLLYSMKLWGDNLEA-LRIAS-GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1398)
Q Consensus 168 ~~~~~l~--~~~~~~~~s~~~~~~s~d~-~~las-gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1398)
..+..++ ...+.. .+.....+. ..|+. .-.++.+.++|-...
T Consensus 87 DminmiKL~~lPg~a----~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d------------------------------ 132 (558)
T KOG0882|consen 87 DMINMIKLVDLPGFA----EWVTSKGDKISLIAVSLFKSGKIFVVDGFGD------------------------------ 132 (558)
T ss_pred chhhhcccccCCCce----EEecCCCCeeeeEEeecccCCCcEEECCcCC------------------------------
Confidence 4432222 111111 110001111 13333 345688888887610
Q ss_pred cceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCce-Eee----eeEEecCCccEEEEEEc-
Q 000602 244 HTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIE-EVG----SSVLYGHNARVWDCCLT- 317 (1398)
Q Consensus 244 ~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~-~i~----~~~~~gh~~~V~~l~~s- 317 (1398)
..+....-.-|..+|..+.++|-+..++|....|.|.-|.....-+.....+. .++ ...+........++.|+
T Consensus 133 -~~q~~~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~Efsp 211 (558)
T KOG0882|consen 133 -FCQDGYFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSFEFSP 211 (558)
T ss_pred -cCccceecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccceEEcc
Confidence 11223333459999999999999999999999999999998741110000000 000 01112233456777887
Q ss_pred -CCEEEEEeCCCcEEEEcC-CCceEEEEe--------------------------------cccCccEEEEEEcCCCCEE
Q 000602 318 -DSFIITAGEDCTCRVWGS-DGKQLKMIK--------------------------------EHIGRGIWRCLYDSLSSLL 363 (1398)
Q Consensus 318 -~~~l~sgs~Dg~i~vWd~-~g~~l~~l~--------------------------------~h~~~~V~sl~~spdg~~l 363 (1398)
+..+.+-+.|..||+++. +|+.++.+. .|....-+.+.|...|++|
T Consensus 212 ~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes~~fl 291 (558)
T KOG0882|consen 212 DGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDESGNFL 291 (558)
T ss_pred ccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCCCCEE
Confidence 688999999999999998 664333221 1222123456677778877
Q ss_pred EEEEcCCcEEEEEcC
Q 000602 364 VTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 364 atgg~Dg~I~iwdl~ 378 (1398)
+-|.-= -|++.++.
T Consensus 292 ly~t~~-gikvin~~ 305 (558)
T KOG0882|consen 292 LYGTIL-GIKVINLD 305 (558)
T ss_pred Eeecce-eEEEEEee
Confidence 766644 36777774
|
|
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.03 E-value=0.38 Score=56.70 Aligned_cols=184 Identities=12% Similarity=0.133 Sum_probs=118.3
Q ss_pred CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC----CcEEEEEEC---------C-CeEEEEEcccCCccccCCCC
Q 000602 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE----ALRIASGTI---------Y-NEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 157 g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d----~~~lasgs~---------d-g~I~vWd~~~~~~~~~~~~~ 222 (1398)
..|++.|..+.+.+.++.-+....+.++..+....+ ..+|+.|+. . |.|.++++... +
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~---~----- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISES---P----- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS---------
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcc---c-----
Confidence 368899998888887777666666777766655432 567887763 2 78888888721 0
Q ss_pred CCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeee
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSS 302 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~ 302 (1398)
.....-+.+.. ....++|++|+-- ++ +|+.+. ...|.+|++...+. +.. .
T Consensus 74 ------------------~~~~~l~~i~~-~~~~g~V~ai~~~-~~-~lv~~~-g~~l~v~~l~~~~~-----l~~---~ 123 (321)
T PF03178_consen 74 ------------------ENNFKLKLIHS-TEVKGPVTAICSF-NG-RLVVAV-GNKLYVYDLDNSKT-----LLK---K 123 (321)
T ss_dssp ----------------------EEEEEEE-EEESS-EEEEEEE-TT-EEEEEE-TTEEEEEEEETTSS-----EEE---E
T ss_pred ------------------ccceEEEEEEE-EeecCcceEhhhh-CC-EEEEee-cCEEEEEEccCccc-----chh---h
Confidence 00001222222 2357889998866 33 444443 36899999998761 121 2
Q ss_pred EEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC--CCceEEEEec-ccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 303 VLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS--DGKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 303 ~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~--~g~~l~~l~~-h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
........+.++...+++|+.|.....+.++.+ .+..+..+.. .....++++.|-++++.++.+..+|.+.++...
T Consensus 124 ~~~~~~~~i~sl~~~~~~I~vgD~~~sv~~~~~~~~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 124 AFYDSPFYITSLSVFKNYILVGDAMKSVSLLRYDEENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp EEE-BSSSEEEEEEETTEEEEEESSSSEEEEEEETTTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred heecceEEEEEEeccccEEEEEEcccCEEEEEEEccCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 333344478888888999999999998888755 4444444332 333358888888666799999999999999985
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.55 Score=55.32 Aligned_cols=190 Identities=15% Similarity=0.171 Sum_probs=118.4
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc----------C-CeEEEEEecCCCCCCC
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG----------E-KRVKLFELNFELSPNS 112 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g----------d-~~V~vwdl~~~~~~~~ 112 (1398)
..|+|.|..+.+.+.++.......+.+++.-... .+.+....+++++. . |.|.++++....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~----~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~---- 73 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLK----GDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESP---- 73 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEET----TS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEc----CccccccCEEEEEecccccccccccCcEEEEEEEEccc----
Confidence 4689999999999888887777778877765221 11000014555443 1 789999998631
Q ss_pred CCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe-EEEEEccCCcceEEEEEeecCCC
Q 000602 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS-IILEVHSPERCLLYSMKLWGDNL 191 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~-~~~~l~~~~~~~~~s~~~~~~s~ 191 (1398)
....+++++.... ..++|++++-. ++. |+.+. .+.|.+|++...+ .......+....+.++..
T Consensus 74 ----~~~~~l~~i~~~~-~~g~V~ai~~~----~~~-lv~~~-g~~l~v~~l~~~~~l~~~~~~~~~~~i~sl~~----- 137 (321)
T PF03178_consen 74 ----ENNFKLKLIHSTE-VKGPVTAICSF----NGR-LVVAV-GNKLYVYDLDNSKTLLKKAFYDSPFYITSLSV----- 137 (321)
T ss_dssp --------EEEEEEEEE-ESS-EEEEEEE----TTE-EEEEE-TTEEEEEEEETTSSEEEEEEE-BSSSEEEEEE-----
T ss_pred ----ccceEEEEEEEEe-ecCcceEhhhh----CCE-EEEee-cCEEEEEEccCcccchhhheecceEEEEEEec-----
Confidence 0111355555443 46889999876 344 54443 5899999998877 554444333335556554
Q ss_pred CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEE
Q 000602 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1398)
Q Consensus 192 d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~L 271 (1398)
.+.+|+.|+....+.++.++.. ......+. -.....+++++.|-++++.+
T Consensus 138 ~~~~I~vgD~~~sv~~~~~~~~-----------------------------~~~l~~va-~d~~~~~v~~~~~l~d~~~~ 187 (321)
T PF03178_consen 138 FKNYILVGDAMKSVSLLRYDEE-----------------------------NNKLILVA-RDYQPRWVTAAEFLVDEDTI 187 (321)
T ss_dssp ETTEEEEEESSSSEEEEEEETT-----------------------------TE-EEEEE-EESS-BEEEEEEEE-SSSEE
T ss_pred cccEEEEEEcccCEEEEEEEcc-----------------------------CCEEEEEE-ecCCCccEEEEEEecCCcEE
Confidence 2569999999999998876610 00111222 12345678999998777899
Q ss_pred EEEECCCeEEEEEcCC
Q 000602 272 VSVSDDRSARIWEVRA 287 (1398)
Q Consensus 272 aS~s~Dg~V~iWd~~~ 287 (1398)
+.+..+|.+.++....
T Consensus 188 i~~D~~gnl~~l~~~~ 203 (321)
T PF03178_consen 188 IVGDKDGNLFVLRYNP 203 (321)
T ss_dssp EEEETTSEEEEEEE-S
T ss_pred EEEcCCCeEEEEEECC
Confidence 9999999999998874
|
CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A .... |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=97.00 E-value=0.11 Score=64.83 Aligned_cols=194 Identities=10% Similarity=0.083 Sum_probs=120.0
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCC-EEEEEEcCCC
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGS-IFRIEWSSCG 268 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~-I~~vafspdg 268 (1398)
++.+..+|.|+.+|.|.+.+-. .+.++.+..+... |..+....+.
T Consensus 32 ~s~~~~vvigt~~G~V~~Ln~s----------------------------------~~~~~~fqa~~~siv~~L~~~~~~ 77 (933)
T KOG2114|consen 32 SSSTGSVVIGTADGRVVILNSS----------------------------------FQLIRGFQAYEQSIVQFLYILNKQ 77 (933)
T ss_pred cCCCceEEEeeccccEEEeccc----------------------------------ceeeehheecchhhhhHhhcccCc
Confidence 4677899999999998888754 3444566667666 4444444444
Q ss_pred CEEEEEECCC-----eEEEEEcCCCcccC-CCCceEeeeeE-Eec-CCccEEEEEEc--CCEEEEEeCCCcEEEEcC---
Q 000602 269 SKLVSVSDDR-----SARIWEVRAEYWKD-SDSIEEVGSSV-LYG-HNARVWDCCLT--DSFIITAGEDCTCRVWGS--- 335 (1398)
Q Consensus 269 ~~LaS~s~Dg-----~V~iWd~~~~~~~~-~~~~~~i~~~~-~~g-h~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~--- 335 (1398)
.+|++.+.|. .++||++....... +.++....... ..+ ...++.+++.+ -+.+|.|-.+|.|..+.-
T Consensus 78 ~~L~sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~ 157 (933)
T KOG2114|consen 78 NFLFSVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDIL 157 (933)
T ss_pred eEEEEEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcch
Confidence 7888887765 48999998754321 22221111111 111 34567778877 478899999999988853
Q ss_pred CCceEE-EEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceee
Q 000602 336 DGKQLK-MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (1398)
Q Consensus 336 ~g~~l~-~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 414 (1398)
..+-.+ .+....+.+|+.+++..++..++-...-..|.+|.+.++. .....
T Consensus 158 RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~----------------------------p~~~~ 209 (933)
T KOG2114|consen 158 RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRT----------------------------PSLKV 209 (933)
T ss_pred hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCC----------------------------cceee
Confidence 111112 2333344589999998888764444445588999886542 01122
Q ss_pred ccCCCCcEEEEEEecCCeEEEEEcCCcEEEE
Q 000602 415 TDSKSEYVRCLHLTSEDTLYIATNHGYLYHT 445 (1398)
Q Consensus 415 ~~~~~~~V~~lafs~dg~llv~t~~g~i~~~ 445 (1398)
.+.+...++|..+++...-++++....++.+
T Consensus 210 ld~~G~~lnCss~~~~t~qfIca~~e~l~fY 240 (933)
T KOG2114|consen 210 LDNNGISLNCSSFSDGTYQFICAGSEFLYFY 240 (933)
T ss_pred eccCCccceeeecCCCCccEEEecCceEEEE
Confidence 3445567888888876654555555556643
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.98 E-value=0.12 Score=66.81 Aligned_cols=217 Identities=13% Similarity=0.135 Sum_probs=121.5
Q ss_pred cceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCC
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1398)
Q Consensus 18 ~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~ 97 (1398)
+.|.++.|. .+ ...++++-.+|.|.+-|.++.... +-+.-.+.|.+++|| ||. +.+..+.+.+
T Consensus 69 ~~i~s~~fl--~d---~~~i~v~~~~G~iilvd~et~~~e--ivg~vd~GI~aaswS-------~De---e~l~liT~~~ 131 (1265)
T KOG1920|consen 69 DEIVSVQFL--AD---TNSICVITALGDIILVDPETLELE--IVGNVDNGISAASWS-------PDE---ELLALITGRQ 131 (1265)
T ss_pred cceEEEEEe--cc---cceEEEEecCCcEEEEccccccee--eeeeccCceEEEeec-------CCC---cEEEEEeCCc
Confidence 578899998 55 134555555789999999886542 222333479999999 887 2445555667
Q ss_pred eEEEEEecCCCCCCCCC-------CCcccc-cceeeeeccc---------------------CCCcEEEEEEEeecCCCc
Q 000602 98 RVKLFELNFELSPNSQY-------QPETCV-NLSLVQSLPR---------------------LSHWVFDVCFLKVCNGNR 148 (1398)
Q Consensus 98 ~V~vwdl~~~~~~~~~~-------~~~~~~-~~~~~~~l~~---------------------h~~~V~~v~fsp~~~dg~ 148 (1398)
++.+-.-........+. +.-..+ -++....++| -.+.=.+|.|-- ||+
T Consensus 132 tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRg---Dg~ 208 (1265)
T KOG1920|consen 132 TLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRG---DGE 208 (1265)
T ss_pred EEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEcc---CCc
Confidence 76665432111000000 000000 0010111111 111224588888 999
Q ss_pred EEEEEE----CC-CeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEE---ECCCeEEEEEcccCCccccCC
Q 000602 149 SLAIGC----SD-NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASG---TIYNEIIVWKVDWEHVAPLLN 220 (1398)
Q Consensus 149 ~Latgs----~D-g~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasg---s~dg~I~vWd~~~~~~~~~~~ 220 (1398)
++|+.. .+ +.|+|||.+ |. +.....+....-.++.| -|.|.++++- +.|+.|.++....-+
T Consensus 209 ~fAVs~~~~~~~~RkirV~drE-g~-Lns~se~~~~l~~~LsW---kPsgs~iA~iq~~~sd~~IvffErNGL~------ 277 (1265)
T KOG1920|consen 209 YFAVSFVESETGTRKIRVYDRE-GA-LNSTSEPVEGLQHSLSW---KPSGSLIAAIQCKTSDSDIVFFERNGLR------ 277 (1265)
T ss_pred EEEEEEEeccCCceeEEEeccc-ch-hhcccCcccccccceee---cCCCCeEeeeeecCCCCcEEEEecCCcc------
Confidence 998832 24 899999987 43 22222233223334444 4578888874 345678888765110
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEE---EECCCeEEEEEcCCCc
Q 000602 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS---VSDDRSARIWEVRAEY 289 (1398)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS---~s~Dg~V~iWd~~~~~ 289 (1398)
.+.....+..-...|..++|+.++..||. +.....|++|-+.+..
T Consensus 278 ------------------------hg~f~l~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Nyh 325 (1265)
T KOG1920|consen 278 ------------------------HGEFVLPFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNYH 325 (1265)
T ss_pred ------------------------ccccccCCcccccchheeeecCCCCceeeeecccccceEEEEEecCeE
Confidence 11111122223344899999999999887 5555569999987743
|
|
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.03 Score=63.73 Aligned_cols=79 Identities=15% Similarity=0.230 Sum_probs=65.0
Q ss_pred eeEEEEEeCccCCEEEEEEcCCCC-EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEE
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCGS-KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFI 321 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg~-~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l 321 (1398)
.+....+.+|...|..++|+|..+ ++..++.+..|+|.|+.+... .. ....| ..+|+++|. .++|
T Consensus 183 fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~-----vs-----sy~a~-~~~wSC~wDlde~h~I 251 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCV-----VS-----SYIAY-NQIWSCCWDLDERHVI 251 (463)
T ss_pred cchhhcccccchhhhhhccCccccceeeeeccCceEEEEeccccee-----ee-----heecc-CCceeeeeccCCccee
Confidence 334556778899999999999776 788899999999999998755 22 44444 789999998 4789
Q ss_pred EEEeCCCcEEEEcC
Q 000602 322 ITAGEDCTCRVWGS 335 (1398)
Q Consensus 322 ~sgs~Dg~i~vWd~ 335 (1398)
+.|-.+|.|.|||+
T Consensus 252 YaGl~nG~VlvyD~ 265 (463)
T KOG1645|consen 252 YAGLQNGMVLVYDM 265 (463)
T ss_pred EEeccCceEEEEEc
Confidence 99999999999999
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.46 Score=57.76 Aligned_cols=48 Identities=17% Similarity=0.286 Sum_probs=39.4
Q ss_pred cEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEec
Q 000602 45 QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELN 105 (1398)
Q Consensus 45 ~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~ 105 (1398)
.|+||+. +|+++.++.-.. .+|.++.|+ .+ +.++++..+|.+++||+.
T Consensus 62 ~I~iys~-sG~ll~~i~w~~-~~iv~~~wt-------~~----e~LvvV~~dG~v~vy~~~ 109 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDS-GRIVGMGWT-------DD----EELVVVQSDGTVRVYDLF 109 (410)
T ss_pred EEEEECC-CCCEeEEEEECC-CCEEEEEEC-------CC----CeEEEEEcCCEEEEEeCC
Confidence 5999995 677788877544 589999999 55 379999999999999985
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.17 Score=61.60 Aligned_cols=225 Identities=14% Similarity=0.155 Sum_probs=118.1
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCC
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~d 146 (1398)
....+.++ |+| ++++++|++.-.|+.... .+.... +.-...+|.+ .
T Consensus 34 ~p~~ls~n-------png----r~v~V~g~geY~iyt~~~---------------~r~k~~-----G~g~~~vw~~---~ 79 (443)
T PF04053_consen 34 YPQSLSHN-------PNG----RFVLVCGDGEYEIYTALA---------------WRNKAF-----GSGLSFVWSS---R 79 (443)
T ss_dssp --SEEEE--------TTS----SEEEEEETTEEEEEETTT---------------TEEEEE-----EE-SEEEE-T---S
T ss_pred CCeeEEEC-------CCC----CEEEEEcCCEEEEEEccC---------------Cccccc-----CceeEEEEec---C
Confidence 46677888 998 789999999999998432 222221 2234677876 5
Q ss_pred CcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCC
Q 000602 147 NRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1398)
Q Consensus 147 g~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s 226 (1398)
++ +|+-...++|.|+.--+......+..+.. +-.+ ++ |.+|...+.+ .|.+||+.
T Consensus 80 n~-yAv~~~~~~I~I~kn~~~~~~k~i~~~~~--~~~I--f~----G~LL~~~~~~-~i~~yDw~--------------- 134 (443)
T PF04053_consen 80 NR-YAVLESSSTIKIYKNFKNEVVKSIKLPFS--VEKI--FG----GNLLGVKSSD-FICFYDWE--------------- 134 (443)
T ss_dssp SE-EEEE-TTS-EEEEETTEE-TT-----SS---EEEE--E-----SSSEEEEETT-EEEEE-TT---------------
T ss_pred cc-EEEEECCCeEEEEEcCccccceEEcCCcc--cceE--Ec----CcEEEEECCC-CEEEEEhh---------------
Confidence 55 66666688899973322222223332221 1111 11 5556655544 89999998
Q ss_pred CCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCccc--CCCCce-EeeeeE
Q 000602 227 AHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWK--DSDSIE-EVGSSV 303 (1398)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~--~~~~~~-~i~~~~ 303 (1398)
+.+.+.++... .|..|.|++++.+++-.+.+ ++.|++....... ..+-++ .+ ..
T Consensus 135 ------------------~~~~i~~i~v~--~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f--~~ 191 (443)
T PF04053_consen 135 ------------------TGKLIRRIDVS--AVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAF--EL 191 (443)
T ss_dssp ------------------T--EEEEESS---E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGE--EE
T ss_pred ------------------HcceeeEEecC--CCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhce--EE
Confidence 67777777643 38999999999999998877 6777776543000 000000 00 12
Q ss_pred EecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 304 LYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 304 ~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
...-..+|.+.+|.++.++-.... .++- + .|+ ..++..-.. ++.-+.+.|+.+.+.....|+.+..+.+.
T Consensus 192 ~~E~~~~IkSg~W~~d~fiYtT~~-~lkY--l~~Ge-~~~i~~ld~-~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 192 IHEISERIKSGCWVEDCFIYTTSN-HLKY--LVNGE-TGIIAHLDK-PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEE-S--SEEEEETTEEEEE-TT-EEEE--EETTE-EEEEEE-SS---EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEecceeEEEEEEcCEEEEEcCC-eEEE--EEcCC-cceEEEcCC-ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 222256788888987665555554 5554 4 333 333333333 68888888888889999999999999874
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.81 Score=55.51 Aligned_cols=80 Identities=13% Similarity=0.171 Sum_probs=61.9
Q ss_pred ccccCCcEEEEEeecCCCEEEEecCCCeEEEEECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCceEE
Q 000602 576 SSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEI 655 (1398)
Q Consensus 576 ~~~h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~L 655 (1398)
.....+.+.|.+++|+.+.|+.|+.||+|.+||..++.. ...+. .-..+.++|. +++..+
T Consensus 255 sipL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t------~~~ka-----------~~~P~~iaWH---p~gai~ 314 (545)
T PF11768_consen 255 SIPLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT------LLAKA-----------EFIPTLIAWH---PDGAIF 314 (545)
T ss_pred EEecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee------eeeee-----------cccceEEEEc---CCCcEE
Confidence 446778899999999999999999999999999876421 00011 0236778888 667889
Q ss_pred EEEcCCccEEEEEEecCCcc
Q 000602 656 RSTGGDGCICYLEYDKDRES 675 (1398)
Q Consensus 656 ~S~g~DG~i~iw~~~~~~~~ 675 (1398)
++++.-|.+.+||+.-+..+
T Consensus 315 ~V~s~qGelQ~FD~ALspi~ 334 (545)
T PF11768_consen 315 VVGSEQGELQCFDMALSPIK 334 (545)
T ss_pred EEEcCCceEEEEEeecCccc
Confidence 99999999999998765443
|
|
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.88 E-value=0.81 Score=52.71 Aligned_cols=265 Identities=14% Similarity=0.093 Sum_probs=146.7
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE--------cC--CeEEEEEecCCCCCCCC
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF--------GE--KRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~--------gd--~~V~vwdl~~~~~~~~~ 113 (1398)
+.+.|+|..+++.+..+...- ...+..+ |+++ .+.++. |+ -.|.+||..+-.
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~---~~~~~~s-------pdgk---~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~----- 78 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGF---LGNVALS-------PDGK---TIYVAETFYSRGTRGERTDVVEIWDTQTLS----- 78 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEES---SEEEEE--------TTSS---EEEEEEEEEEETTEEEEEEEEEEEETTTTE-----
T ss_pred ceEEEEECCCCcEEEEeeccc---CCceeEC-------CCCC---EEEEEEEEEeccccccceeEEEEEecCcCc-----
Confidence 479999999999999887532 3446778 8884 332221 12 248999998622
Q ss_pred CCCcccccceeeeeccc-CC----CcEEEEEEEeecCCCcEEEEEE--CCCeEEEEEcCCCeEEEEEccCCcceEEEEEe
Q 000602 114 YQPETCVNLSLVQSLPR-LS----HWVFDVCFLKVCNGNRSLAIGC--SDNSIRVWDISNSSIILEVHSPERCLLYSMKL 186 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~-h~----~~V~~v~fsp~~~dg~~Latgs--~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~ 186 (1398)
.+..-.++. |. -..+..+++. |++++++.. --.+|.|-|+..++.+.++..+....+|-.
T Consensus 79 --------~~~EI~iP~k~R~~~~~~~~~~~ls~---dgk~~~V~N~TPa~SVtVVDl~~~kvv~ei~~PGC~~iyP~-- 145 (342)
T PF06433_consen 79 --------PTGEIEIPPKPRAQVVPYKNMFALSA---DGKFLYVQNFTPATSVTVVDLAAKKVVGEIDTPGCWLIYPS-- 145 (342)
T ss_dssp --------EEEEEEETTS-B--BS--GGGEEE-T---TSSEEEEEEESSSEEEEEEETTTTEEEEEEEGTSEEEEEEE--
T ss_pred --------ccceEecCCcchheecccccceEEcc---CCcEEEEEccCCCCeEEEEECCCCceeeeecCCCEEEEEec--
Confidence 111112221 11 1223457777 888887753 355799999999999999887764444432
Q ss_pred ecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEE----EEeCccCCEE-E
Q 000602 187 WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLF----RLVGHEGSIF-R 261 (1398)
Q Consensus 187 ~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~----~l~gH~~~I~-~ 261 (1398)
. ...+.+-|.||.+.-..+.. .++... .+..-..+++ .
T Consensus 146 ---~--~~~F~~lC~DGsl~~v~Ld~--------------------------------~Gk~~~~~t~~F~~~~dp~f~~ 188 (342)
T PF06433_consen 146 ---G--NRGFSMLCGDGSLLTVTLDA--------------------------------DGKEAQKSTKVFDPDDDPLFEH 188 (342)
T ss_dssp ---E--TTEEEEEETTSCEEEEEETS--------------------------------TSSEEEEEEEESSTTTS-B-S-
T ss_pred ---C--CCceEEEecCCceEEEEECC--------------------------------CCCEeEeeccccCCCCcccccc
Confidence 1 24588899999999998871 111111 1111112222 2
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEec----CCc----cEEEEEEc--CCEEEEE---eCCC
Q 000602 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYG----HNA----RVWDCCLT--DSFIITA---GEDC 328 (1398)
Q Consensus 262 vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~g----h~~----~V~~l~~s--~~~l~sg---s~Dg 328 (1398)
=++...+..++-.+..|.|+--|+..... +...+..+.. -.. .-.-++++ .+.|+.. +.++
T Consensus 189 ~~~~~~~~~~~F~Sy~G~v~~~dlsg~~~------~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~g 262 (342)
T PF06433_consen 189 PAYSRDGGRLYFVSYEGNVYSADLSGDSA------KFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEG 262 (342)
T ss_dssp -EEETTTTEEEEEBTTSEEEEEEETTSSE------EEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT
T ss_pred cceECCCCeEEEEecCCEEEEEeccCCcc------cccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCC
Confidence 23344444555566777776666665432 1111101000 000 01113444 2233322 1122
Q ss_pred -------cEEEEcC-CCceEEEEecccCccEEEEEEcCCCC-EEEEE-EcCCcEEEEEc-CCCCccc
Q 000602 329 -------TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-LLVTA-GFDSAIKVHQF-QAFLPGS 384 (1398)
Q Consensus 329 -------~i~vWd~-~g~~l~~l~~h~~~~V~sl~~spdg~-~latg-g~Dg~I~iwdl-~~~~l~~ 384 (1398)
.|.++|+ +++.+..+.... ++.+|.++.+.+ +|++. ..++.+.+||. +++.+++
T Consensus 263 sHKdpgteVWv~D~~t~krv~Ri~l~~--~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~ 327 (342)
T PF06433_consen 263 SHKDPGTEVWVYDLKTHKRVARIPLEH--PIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRS 327 (342)
T ss_dssp -TTS-EEEEEEEETTTTEEEEEEEEEE--EESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEE
T ss_pred CccCCceEEEEEECCCCeEEEEEeCCC--ccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEee
Confidence 2777777 888888887543 488999998776 66554 45899999999 4444443
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.82 E-value=0.7 Score=57.78 Aligned_cols=94 Identities=7% Similarity=-0.016 Sum_probs=54.6
Q ss_pred EEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEE------------------eCCCcEE
Q 000602 270 KLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITA------------------GEDCTCR 331 (1398)
Q Consensus 270 ~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sg------------------s~Dg~i~ 331 (1398)
.++.++.+|.+...|..+++.. .+ . ... ...++..++.++.+ ..+|.+.
T Consensus 303 ~V~~g~~~G~l~ald~~tG~~~----W~-~---~~~-----~~~~~~~~~~vyv~~~~~~~~~~~~~~~~~~~~~~G~l~ 369 (488)
T cd00216 303 AIVHAPKNGFFYVLDRTTGKLI----SA-R---PEV-----EQPMAYDPGLVYLGAFHIPLGLPPQKKKRCKKPGKGGLA 369 (488)
T ss_pred EEEEECCCceEEEEECCCCcEe----eE-e---Eee-----ccccccCCceEEEccccccccCcccccCCCCCCCceEEE
Confidence 5677888999999999988652 11 0 100 01122223333332 2356777
Q ss_pred EEcC-CCceEEEEecccC-------ccEE--EEEEcCCCCEEEEEEcCCcEEEEEcC
Q 000602 332 VWGS-DGKQLKMIKEHIG-------RGIW--RCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 332 vWd~-~g~~l~~l~~h~~-------~~V~--sl~~spdg~~latgg~Dg~I~iwdl~ 378 (1398)
-.|+ +|+.+-....... .+.. .++. .+..|+.++.||.++.+|.+
T Consensus 370 AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g~~v~~g~~dG~l~ald~~ 424 (488)
T cd00216 370 ALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AGNLVFAGAADGYFRAFDAT 424 (488)
T ss_pred EEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cCCeEEEECCCCeEEEEECC
Confidence 7787 7777766543310 0111 1222 45688888999999999984
|
The alignment model contains an 8-bladed beta-propeller. |
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.18 Score=62.30 Aligned_cols=272 Identities=10% Similarity=-0.025 Sum_probs=138.3
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEEEEEEecc------------ccccCCCCccceeEEEEEc--CCe
Q 000602 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI------------NCTEGSVSTRVTFEVALFG--EKR 98 (1398)
Q Consensus 35 g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~------------~~~~~pdg~~~~~~la~~g--d~~ 98 (1398)
|+||+.-. ++.|-.-++...++-..+.......+|+++|-.. ...-.||| ..+-..+ .+.
T Consensus 141 Gr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDG----k~l~~~~ey~~~ 216 (635)
T PRK02888 141 GRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDG----KDLDDPKKYRSL 216 (635)
T ss_pred eeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCC----CEeecccceeEE
Confidence 78888876 4667667776665544444444445777776521 01111344 2222222 345
Q ss_pred EEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCc
Q 000602 99 VKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1398)
Q Consensus 99 V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~ 178 (1398)
+.++|.++ .+....+.- .+...-++++| +|+++++.+.+ .+.+..+..+.....
T Consensus 217 vSvID~et---------------meV~~qV~V-dgnpd~v~~sp---dGk~afvTsyN-------sE~G~tl~em~a~e~ 270 (635)
T PRK02888 217 FTAVDAET---------------MEVAWQVMV-DGNLDNVDTDY---DGKYAFSTCYN-------SEEGVTLAEMMAAER 270 (635)
T ss_pred EEEEECcc---------------ceEEEEEEe-CCCcccceECC---CCCEEEEeccC-------cccCcceeeeccccC
Confidence 55555553 222222221 12345677888 88888777532 222323332222222
Q ss_pred ceEEEEEe---ecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 179 CLLYSMKL---WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 179 ~~~~s~~~---~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
..+..+.+ ....++|.+... .++.|.+.|..+.. ..+..+...-.-
T Consensus 271 d~~vvfni~~iea~vkdGK~~~V--~gn~V~VID~~t~~-----------------------------~~~~~v~~yIPV 319 (635)
T PRK02888 271 DWVVVFNIARIEEAVKAGKFKTI--GGSKVPVVDGRKAA-----------------------------NAGSALTRYVPV 319 (635)
T ss_pred ceEEEEchHHHHHhhhCCCEEEE--CCCEEEEEECCccc-----------------------------cCCcceEEEEEC
Confidence 11111110 011345655554 25778899877100 001122222234
Q ss_pred cCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcccCCCCceEeee-eEEecCCccEEEEEEc--CCEEEEEeCCCcEE
Q 000602 256 EGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 256 ~~~I~~vafspdg~~LaS~s-~Dg~V~iWd~~~~~~~~~~~~~~i~~-~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~ 331 (1398)
......+.++|||++++.++ .+.+|.+.|+.+.+..-...++.-.. ..-..-.......+|. +....|--.|..|.
T Consensus 320 GKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPLHTaFDg~G~aytslf~dsqv~ 399 (635)
T PRK02888 320 PKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPLHTAFDGRGNAYTTLFLDSQIV 399 (635)
T ss_pred CCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcceEEECCCCCEEEeEeecceeE
Confidence 56678999999999886655 58999999998854310000000000 0000112334556777 45677778899999
Q ss_pred EEcCCC-----------ceEEEEecccCccEEEE-----EEcCCCCEEEEEEc
Q 000602 332 VWGSDG-----------KQLKMIKEHIGRGIWRC-----LYDSLSSLLVTAGF 368 (1398)
Q Consensus 332 vWd~~g-----------~~l~~l~~h~~~~V~sl-----~~spdg~~latgg~ 368 (1398)
.|++.. ..+..+.-|-.. -.-. .-.|+|+||++...
T Consensus 400 kwn~~~a~~~~~g~~~~~v~~k~dV~y~p-gh~~~~~g~t~~~dgk~l~~~nk 451 (635)
T PRK02888 400 KWNIEAAIRAYKGEKVDPIVQKLDVHYQP-GHNHASMGETKEADGKWLVSLNK 451 (635)
T ss_pred EEehHHHHHHhccccCCcceecccCCCcc-ceeeecCCCcCCCCCCEEEEccc
Confidence 999832 344444444331 1111 13678888887553
|
|
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.54 Score=56.53 Aligned_cols=260 Identities=13% Similarity=0.106 Sum_probs=132.1
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCC-------CCCC---------Cc----------c--
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPN-------SQYQ---------PE----------T-- 118 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~-------~~~~---------~~----------~-- 118 (1398)
.|..|.|+ ++.. .+.++...|.|.||.+......+ ..+. +. .
T Consensus 3 ~v~~vs~a-------~~t~---Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~ 72 (395)
T PF08596_consen 3 SVTHVSFA-------PETL---ELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSL 72 (395)
T ss_dssp -EEEEEEE-------TTTT---EEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-
T ss_pred eEEEEEec-------CCCc---eEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCccc
Confidence 58888888 6542 66677779999999887532111 0000 00 0
Q ss_pred cccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc-------CCcceEEEEEee--cC
Q 000602 119 CVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS-------PERCLLYSMKLW--GD 189 (1398)
Q Consensus 119 ~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~-------~~~~~~~s~~~~--~~ 189 (1398)
.-.+.+..-+....++|.+++.| |-.++|.|..+|.+.|.|++....+..-.- ...+.+.++.|. ..
T Consensus 73 ~~gf~P~~l~~~~~g~vtal~~S----~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~ 148 (395)
T PF08596_consen 73 KEGFLPLTLLDAKQGPVTALKNS----DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTL 148 (395)
T ss_dssp SEEEEEEEEE---S-SEEEEEE-----BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-
T ss_pred ccccCchhheeccCCcEeEEecC----CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEec
Confidence 00133444445557899999997 556899999999999999988888766321 122233333332 11
Q ss_pred CCC---CcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEE-Ec
Q 000602 190 NLE---ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIE-WS 265 (1398)
Q Consensus 190 s~d---~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~va-fs 265 (1398)
..| ..+++.|+..|.+.+|++. +... .....+.......+.+.|..|. |+
T Consensus 149 ~~D~ySSi~L~vGTn~G~v~~fkIl-----p~~~---------------------g~f~v~~~~~~~~~~~~i~~I~~i~ 202 (395)
T PF08596_consen 149 GGDGYSSICLLVGTNSGNVLTFKIL-----PSSN---------------------GRFSVQFAGATTNHDSPILSIIPIN 202 (395)
T ss_dssp TTSSSEEEEEEEEETTSEEEEEEEE-----E-GG---------------------G-EEEEEEEEE--SS----EEEEEE
T ss_pred CCCcccceEEEEEeCCCCEEEEEEe-----cCCC---------------------CceEEEEeeccccCCCceEEEEEEE
Confidence 223 3688999999999999886 1000 0001122222234556666655 32
Q ss_pred CCC--------------------CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEE-------cC
Q 000602 266 SCG--------------------SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL-------TD 318 (1398)
Q Consensus 266 pdg--------------------~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~-------s~ 318 (1398)
.+. ..++....+..+|++...+.+.. . ...........+.+ .+
T Consensus 203 ~~~G~~a~At~~~~~~l~~g~~i~g~vVvvSe~~irv~~~~~~k~~-----~-----K~~~~~~~~~~~~vv~~~~~~~~ 272 (395)
T PF08596_consen 203 ADTGESALATISAMQGLSKGISIPGYVVVVSESDIRVFKPPKSKGA-----H-----KSFDDPFLCSSASVVPTISRNGG 272 (395)
T ss_dssp TTT--B-B-BHHHHHGGGGT----EEEEEE-SSEEEEE-TT---EE-----E-----EE-SS-EEEEEEEEEEEE-EEEE
T ss_pred CCCCCcccCchhHhhccccCCCcCcEEEEEcccceEEEeCCCCccc-----c-----eeeccccccceEEEEeecccCCc
Confidence 210 12333444668999998876541 1 12222122222333 24
Q ss_pred CEEEEEeCCCcEEEEcC-CCceEEEEecccC---ccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIG---RGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 319 ~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~---~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
..|++-..+|.++++.+ .-+.+..++.... +.+....++++|..++-.|. ..+.++.+
T Consensus 273 ~~Lv~l~~~G~i~i~SLP~Lkei~~~~l~~~~d~~~~~~ssis~~Gdi~~~~gp-sE~~l~sv 334 (395)
T PF08596_consen 273 YCLVCLFNNGSIRIYSLPSLKEIKSVSLPPPLDSRRLSSSSISRNGDIFYWTGP-SEIQLFSV 334 (395)
T ss_dssp EEEEEEETTSEEEEEETTT--EEEEEE-SS---HHHHTT-EE-TTS-EEEE-SS-SEEEEEEE
T ss_pred eEEEEEECCCcEEEEECCCchHhhcccCCCccccccccccEECCCCCEEEEeCc-ccEEEEEE
Confidence 57888889999999999 7777777665321 12445667888886665543 35555555
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.72 E-value=0.027 Score=69.01 Aligned_cols=186 Identities=15% Similarity=0.162 Sum_probs=112.4
Q ss_pred EEEEeecCCCcEEEEEE----CCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 138 VCFLKVCNGNRSLAIGC----SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs----~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
..|+| ...++|+++ ..|+|.||- ++|++...+..|.. +.+++| .|...+|+.|=.-|.+.+|...
T Consensus 21 ~SWHP---sePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt~P~h--atSLCW---Hpe~~vLa~gwe~g~~~v~~~~-- 89 (1416)
T KOG3617|consen 21 SSWHP---SEPLFAVASFSPERGGSVTIFA-DTGEPQRDVTYPVH--ATSLCW---HPEEFVLAQGWEMGVSDVQKTN-- 89 (1416)
T ss_pred cccCC---CCceeEEEEecCCCCceEEEEe-cCCCCCccccccee--hhhhcc---ChHHHHHhhccccceeEEEecC--
Confidence 45777 777777765 367787773 56665444443332 334566 4667788889889999999977
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCC
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~ 293 (1398)
..+.-.....|..+|..+.|||+|..|+|+..-|.|.+|.......
T Consensus 90 -------------------------------~~e~htv~~th~a~i~~l~wS~~G~~l~t~d~~g~v~lwr~d~~g~--- 135 (1416)
T KOG3617|consen 90 -------------------------------TTETHTVVETHPAPIQGLDWSHDGTVLMTLDNPGSVHLWRYDVIGE--- 135 (1416)
T ss_pred -------------------------------CceeeeeccCCCCCceeEEecCCCCeEEEcCCCceeEEEEeeeccc---
Confidence 2222333456999999999999999999999999999998874322
Q ss_pred CCceEeeeeEEecCCc--cEEEEEE--cC--------CEEEEEeCCCcEE-EEcCCCceEEEEecccCccEEEEEEcCCC
Q 000602 294 DSIEEVGSSVLYGHNA--RVWDCCL--TD--------SFIITAGEDCTCR-VWGSDGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 294 ~~~~~i~~~~~~gh~~--~V~~l~~--s~--------~~l~sgs~Dg~i~-vWd~~g~~l~~l~~h~~~~V~sl~~spdg 360 (1398)
++. ..+..|.- .++-++| +. ...+..+.+..+- .++-..+.-..-..|. =.|+|
T Consensus 136 --~q~---~~~~~hel~~~ltl~cfRL~~~~Ee~~~laKaaVtgDe~alD~~fnwk~~~a~rs~~ks--------gv~~g 202 (1416)
T KOG3617|consen 136 --IQT---SNIMQHELNDQLTLWCFRLSYDREEKFKLAKAAVTGDESALDEPFNWKESLAERSDEKS--------GVPKG 202 (1416)
T ss_pred --ccc---chhhhhHhhceeeEEEEecCCChHHhhhhhhhhccCchhhhcccccCccchhhcccccc--------CCCCC
Confidence 111 13334432 2322333 31 1333344433332 2222100000000011 14678
Q ss_pred CEEEEEEcCCcEEEEEcCCCC
Q 000602 361 SLLVTAGFDSAIKVHQFQAFL 381 (1398)
Q Consensus 361 ~~latgg~Dg~I~iwdl~~~~ 381 (1398)
..+..++.+|+|+-.|-++.+
T Consensus 203 ~~F~~~~~~GtVyyvdq~g~~ 223 (1416)
T KOG3617|consen 203 TEFLFAGKSGTVYYVDQNGRQ 223 (1416)
T ss_pred cEEEEEcCCceEEEEcCCCcE
Confidence 888889999999998876543
|
|
| >KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.71 E-value=0.0096 Score=68.30 Aligned_cols=211 Identities=11% Similarity=0.044 Sum_probs=130.8
Q ss_pred cCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC--CeE-EEEEccCCcceEEEEEeecCCCCCcEEEEEEC-CCeE
Q 000602 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN--SSI-ILEVHSPERCLLYSMKLWGDNLEALRIASGTI-YNEI 205 (1398)
Q Consensus 130 ~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~--~~~-~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~-dg~I 205 (1398)
-|.+.|+.+... -.+++.+++.||.++.|.-.. +.. +..+..+. ..+.+++. +.++.++.+++. |..+
T Consensus 7 mhrd~i~hv~~t----ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL-~~I~sl~~---S~dg~L~~Sv~d~Dhs~ 78 (558)
T KOG0882|consen 7 MHRDVITHVFPT----KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHL-GVILSLAV---SYDGWLFRSVEDPDHSV 78 (558)
T ss_pred cccceeeeEeee----hhheEEeeecchhhhhcCCCCccceeehhhhHHHH-HHHHhhhc---cccceeEeeccCcccce
Confidence 377777777655 457899999999999998643 211 22222222 23334433 668888999776 9999
Q ss_pred EEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEc
Q 000602 206 IVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 206 ~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~ 285 (1398)
+++|+..-.+.. .+++.+.+ ....-..+....+.. .-++.-.++.+.++|-
T Consensus 79 KvfDvEn~Dmin------------------miKL~~lP---g~a~wv~skGd~~s~--------IAVs~~~sg~i~VvD~ 129 (558)
T KOG0882|consen 79 KVFDVENFDMIN------------------MIKLVDLP---GFAEWVTSKGDKISL--------IAVSLFKSGKIFVVDG 129 (558)
T ss_pred eEEEeeccchhh------------------hcccccCC---CceEEecCCCCeeee--------EEeecccCCCcEEECC
Confidence 999998322110 01111111 000001111111222 2234446789999998
Q ss_pred CCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCCCc-------e---------EEEEeccc
Q 000602 286 RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGK-------Q---------LKMIKEHI 347 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~g~-------~---------l~~l~~h~ 347 (1398)
....+. .. ....-|..+|..+.+. +..+++....|.|.-|..++. . +..+....
T Consensus 130 ~~d~~q----~~----~fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~K 201 (558)
T KOG0882|consen 130 FGDFCQ----DG----YFKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAK 201 (558)
T ss_pred cCCcCc----cc----eecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccc
Confidence 776541 11 2445689999999997 578888888999999998641 1 01111223
Q ss_pred CccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC-CCccccc
Q 000602 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA-FLPGSLE 386 (1398)
Q Consensus 348 ~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~-~~l~~l~ 386 (1398)
. ...++.|+|++..+.+-+.|..|+++.+.+ ..++.+.
T Consensus 202 t-~pts~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiD 240 (558)
T KOG0882|consen 202 T-EPTSFEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEID 240 (558)
T ss_pred c-CccceEEccccCcccccCcccEEEEEEeccchhhhhhh
Confidence 3 367899999999999999999999999954 4444443
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.52 Score=61.21 Aligned_cols=247 Identities=15% Similarity=0.110 Sum_probs=131.1
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEccc
Q 000602 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDW 212 (1398)
Q Consensus 133 ~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~ 212 (1398)
+.|.++.|.. +..-++.+..+|.|.+-|.++..... -+.....+-++.| +||+.+++-.+..+++.+-+...
T Consensus 69 ~~i~s~~fl~---d~~~i~v~~~~G~iilvd~et~~~ei--vg~vd~GI~aasw---S~Dee~l~liT~~~tll~mT~~f 140 (1265)
T KOG1920|consen 69 DEIVSVQFLA---DTNSICVITALGDIILVDPETLELEI--VGNVDNGISAASW---SPDEELLALITGRQTLLFMTKDF 140 (1265)
T ss_pred cceEEEEEec---ccceEEEEecCCcEEEEcccccceee--eeeccCceEEEee---cCCCcEEEEEeCCcEEEEEeccc
Confidence 6899999998 88888889999999999887754321 1222223445555 78999999999888888876541
Q ss_pred CCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccC
Q 000602 213 EHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292 (1398)
Q Consensus 213 ~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~ 292 (1398)
..+. .+++ |.. -.+. ...++++..+.=.-+.-..++...
T Consensus 141 ~~i~-----------------------------E~~L-----~~d------~~~~-sk~v~VGwGrkeTqfrgs~gr~~~ 179 (1265)
T KOG1920|consen 141 EPIA-----------------------------EKPL-----DAD------DERK-SKFVNVGWGRKETQFRGSEGRQAA 179 (1265)
T ss_pred cchh-----------------------------cccc-----ccc------cccc-cccceecccccceeeecchhhhcc
Confidence 1110 0000 000 0000 112222222211122212221110
Q ss_pred CCCceEeeeeE-EecCCccEEEEEEc--CCEEEEE----eCC-CcEEEEcCCCceEEEEecccCccEEEEEEcCCCCEEE
Q 000602 293 SDSIEEVGSSV-LYGHNARVWDCCLT--DSFIITA----GED-CTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLV 364 (1398)
Q Consensus 293 ~~~~~~i~~~~-~~gh~~~V~~l~~s--~~~l~sg----s~D-g~i~vWd~~g~~l~~l~~h~~~~V~sl~~spdg~~la 364 (1398)
.+.+...+... ..-| ..=..+.|. +.++++. ..+ .+++|||.+|..-.+-....+ -=.+++|-|.|.+++
T Consensus 180 ~~~~~~ek~~~~~~~~-~~~~~IsWRgDg~~fAVs~~~~~~~~RkirV~drEg~Lns~se~~~~-l~~~LsWkPsgs~iA 257 (1265)
T KOG1920|consen 180 RQKIEKEKALEQIEQD-DHKTSISWRGDGEYFAVSFVESETGTRKIRVYDREGALNSTSEPVEG-LQHSLSWKPSGSLIA 257 (1265)
T ss_pred cccccccccccchhhc-cCCceEEEccCCcEEEEEEEeccCCceeEEEecccchhhcccCcccc-cccceeecCCCCeEe
Confidence 00000000000 0011 122356776 4566662 233 789999987543222111122 235789999999998
Q ss_pred EEE---cCCcEEEEEcCCCCcccccCCCccccccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEE-EcCC
Q 000602 365 TAG---FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHG 440 (1398)
Q Consensus 365 tgg---~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~-t~~g 440 (1398)
+-. .|+.|.++.-+|-.... |++..|. ....+..++|+.++.+|+. +...
T Consensus 258 ~iq~~~sd~~IvffErNGL~hg~----------------f~l~~p~----------de~~ve~L~Wns~sdiLAv~~~~~ 311 (1265)
T KOG1920|consen 258 AIQCKTSDSDIVFFERNGLRHGE----------------FVLPFPL----------DEKEVEELAWNSNSDILAVVTSNL 311 (1265)
T ss_pred eeeecCCCCcEEEEecCCccccc----------------cccCCcc----------cccchheeeecCCCCceeeeeccc
Confidence 855 36679999887642211 1221111 2223889999999988776 2222
Q ss_pred cEEEEEeecCCCceeE
Q 000602 441 YLYHTKLCDMDSVNWN 456 (1398)
Q Consensus 441 ~i~~~~l~~~~~~~w~ 456 (1398)
.-..+.+|...+..|.
T Consensus 312 e~~~v~lwt~~NyhWY 327 (1265)
T KOG1920|consen 312 ENSLVQLWTTGNYHWY 327 (1265)
T ss_pred ccceEEEEEecCeEEE
Confidence 2222446777777773
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.56 Score=52.46 Aligned_cols=213 Identities=8% Similarity=0.044 Sum_probs=114.4
Q ss_pred eeecccCCCcEEEEEEEeecCCC-cEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCC
Q 000602 125 VQSLPRLSHWVFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 125 ~~~l~~h~~~V~~v~fsp~~~dg-~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg 203 (1398)
.+.+.+-.+.+..++|.| +. .++++....+.|...+. +|+.+.++.-....-.-.+.+ ..++.++++.-.++
T Consensus 14 ~~~l~g~~~e~SGLTy~p---d~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y---~g~~~~vl~~Er~~ 86 (248)
T PF06977_consen 14 AKPLPGILDELSGLTYNP---DTGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITY---LGNGRYVLSEERDQ 86 (248)
T ss_dssp EEE-TT--S-EEEEEEET---TTTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE----STTEEEEEETTTT
T ss_pred eeECCCccCCccccEEcC---CCCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEE---ECCCEEEEEEcCCC
Confidence 356667777899999999 64 56666777788877786 578887776433333344554 34566666666789
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEE-----eCccCCEEEEEEcCCCCEEEEEECCC
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-----VGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l-----~gH~~~I~~vafspdg~~LaS~s~Dg 278 (1398)
.+.+.++...... + .......+ ..+...+-+|+|+|.++.|+.+-+..
T Consensus 87 ~L~~~~~~~~~~~--------------------~-------~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~ 139 (248)
T PF06977_consen 87 RLYIFTIDDDTTS--------------------L-------DRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERK 139 (248)
T ss_dssp EEEEEEE----TT-----------------------------EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESS
T ss_pred cEEEEEEeccccc--------------------c-------chhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCC
Confidence 9999998511000 0 01111111 13556689999999988887777777
Q ss_pred eEEEEEcCCCcccCCCCceEeee---eEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcCCCceEEEEecccC----
Q 000602 279 SARIWEVRAEYWKDSDSIEEVGS---SVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHIG---- 348 (1398)
Q Consensus 279 ~V~iWd~~~~~~~~~~~~~~i~~---~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~~---- 348 (1398)
-.+|+.+..... ......... .........+.+++++ +.+++...+...+..+|.+|+.+..+....+
T Consensus 140 P~~l~~~~~~~~--~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl 217 (248)
T PF06977_consen 140 PKRLYEVNGFPG--GFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGL 217 (248)
T ss_dssp SEEEEEEESTT---SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-
T ss_pred ChhhEEEccccC--ccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCc
Confidence 777877765110 000111100 0011233457888888 4688888899999999999998877654331
Q ss_pred ----ccEEEEEEcCCCCEEEEEEcCCcEEE
Q 000602 349 ----RGIWRCLYDSLSSLLVTAGFDSAIKV 374 (1398)
Q Consensus 349 ----~~V~sl~~spdg~~latgg~Dg~I~i 374 (1398)
..--.|+|.++|++.++ +.-+...+
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIv-sEpNlfy~ 246 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIV-SEPNLFYR 246 (248)
T ss_dssp SS---SEEEEEE-TT--EEEE-ETTTEEEE
T ss_pred ccccCCccEEEECCCCCEEEE-cCCceEEE
Confidence 13678999999865444 44444333
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1 | Back alignment and domain information |
|---|
Probab=96.61 E-value=2 Score=49.53 Aligned_cols=272 Identities=12% Similarity=0.131 Sum_probs=136.9
Q ss_pred CcEEEEeCCcCeeccceE-----EEEEEecCCCCCCCCEEEEEe-----------CCcEEEEECCCCeEEEEEEeeeCcc
Q 000602 4 KDLSEWRLDVGQYLGEIS-----ALCFVHLPSHLSSLPFLLAGS-----------GSQVLLYDLEAGTLIRPFQVFHGIR 67 (1398)
Q Consensus 4 ~tv~iWdl~~~~h~~~Vt-----alafs~~pd~~~~g~lLaag~-----------dg~I~Iwd~~tg~~l~~~~~~~~~~ 67 (1398)
+.+.+.|..+++..|-|. -+..+ || ++.+++.+ ...|.+||.++-+....+......+
T Consensus 17 ~rv~viD~d~~k~lGmi~~g~~~~~~~s--pd----gk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP~k~R 90 (342)
T PF06433_consen 17 SRVYVIDADSGKLLGMIDTGFLGNVALS--PD----GKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIPPKPR 90 (342)
T ss_dssp EEEEEEETTTTEEEEEEEEESSEEEEE---TT----SSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEETTS-B
T ss_pred ceEEEEECCCCcEEEEeecccCCceeEC--CC----CCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecCCcch
Confidence 468899999988666653 36788 88 77777632 1369999999998888777643212
Q ss_pred EEE------EEEeccccccCCCCccceeEEEEEc---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEE
Q 000602 68 LHG------ISCNFINCTEGSVSTRVTFEVALFG---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1398)
Q Consensus 68 V~~------i~fs~~~~~~~pdg~~~~~~la~~g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v 138 (1398)
... ++++ .|| +.+.++. ..+|.|.|++. .+.+..+.- .+ |.
T Consensus 91 ~~~~~~~~~~~ls-------~dg----k~~~V~N~TPa~SVtVVDl~~---------------~kvv~ei~~-PG---C~ 140 (342)
T PF06433_consen 91 AQVVPYKNMFALS-------ADG----KFLYVQNFTPATSVTVVDLAA---------------KKVVGEIDT-PG---CW 140 (342)
T ss_dssp --BS--GGGEEE--------TTS----SEEEEEEESSSEEEEEEETTT---------------TEEEEEEEG-TS---EE
T ss_pred heecccccceEEc-------cCC----cEEEEEccCCCCeEEEEECCC---------------CceeeeecC-CC---EE
Confidence 222 2333 555 3444443 45666666664 233333221 11 22
Q ss_pred EEEeecCCCcEEEEEECCCeEEEEEcC-CCeEEEEE---ccCCcceEEE-EEeecCCCCCcEEEEEECCCeEEEEEcccC
Q 000602 139 CFLKVCNGNRSLAIGCSDNSIRVWDIS-NSSIILEV---HSPERCLLYS-MKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~V~vWd~~-~~~~~~~l---~~~~~~~~~s-~~~~~~s~d~~~lasgs~dg~I~vWd~~~~ 213 (1398)
-.-|. ..+.+.+-+.||++.-..+. .|+...+. ..+....++. ..+ ...+..++--+..|.|+--|+...
T Consensus 141 ~iyP~--~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~~F~~~~dp~f~~~~~---~~~~~~~~F~Sy~G~v~~~dlsg~ 215 (342)
T PF06433_consen 141 LIYPS--GNRGFSMLCGDGSLLTVTLDADGKEAQKSTKVFDPDDDPLFEHPAY---SRDGGRLYFVSYEGNVYSADLSGD 215 (342)
T ss_dssp EEEEE--ETTEEEEEETTSCEEEEEETSTSSEEEEEEEESSTTTS-B-S--EE---ETTTTEEEEEBTTSEEEEEEETTS
T ss_pred EEEec--CCCceEEEecCCceEEEEECCCCCEeEeeccccCCCCcccccccce---ECCCCeEEEEecCCEEEEEeccCC
Confidence 22341 22457778889999999997 56554222 1222222221 111 123445555778888888887722
Q ss_pred CccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE---C-----C--CeEEEE
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---D-----D--RSARIW 283 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s---~-----D--g~V~iW 283 (1398)
.... ..-|..-.....-... -.+.-.-+++++..+.|...- . | ..|.++
T Consensus 216 ~~~~-------------------~~~~~~~t~~e~~~~W--rPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~ 274 (342)
T PF06433_consen 216 SAKF-------------------GKPWSLLTDAEKADGW--RPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVY 274 (342)
T ss_dssp SEEE-------------------EEEEESS-HHHHHTTE--EE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEE
T ss_pred cccc-------------------cCcccccCccccccCc--CCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEE
Confidence 1000 0001000000000000 001112245555444333221 1 1 146677
Q ss_pred EcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEE-eCCCcEEEEcC-CCceEEEEecccC
Q 000602 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITA-GEDCTCRVWGS-DGKQLKMIKEHIG 348 (1398)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sg-s~Dg~i~vWd~-~g~~l~~l~~h~~ 348 (1398)
|+.+++. +. .+. -...+.+++.+ ..+|++. ..++.+.+||. +|+.+.++..-..
T Consensus 275 D~~t~kr-----v~-----Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~~lG~ 333 (342)
T PF06433_consen 275 DLKTHKR-----VA-----RIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIEQLGE 333 (342)
T ss_dssp ETTTTEE-----EE-----EEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE---SS
T ss_pred ECCCCeE-----EE-----EEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehhccCC
Confidence 7777655 22 111 12346688887 2466554 56899999999 9999888876544
|
4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). |
| >cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases | Back alignment and domain information |
|---|
Probab=96.58 E-value=1.1 Score=56.13 Aligned_cols=33 Identities=15% Similarity=0.302 Sum_probs=27.3
Q ss_pred EEEcCCEEEEEeCCCcEEEEcC-CCceEEEEecc
Q 000602 314 CCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1398)
Q Consensus 314 l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h 346 (1398)
+...++.|+.++.||.++.+|. +|+.+..++..
T Consensus 402 ~~~~g~~v~~g~~dG~l~ald~~tG~~lW~~~~~ 435 (488)
T cd00216 402 LATAGNLVFAGAADGYFRAFDATTGKELWKFRTP 435 (488)
T ss_pred eEecCCeEEEECCCCeEEEEECCCCceeeEEECC
Confidence 3445789999999999999999 99988887653
|
The alignment model contains an 8-bladed beta-propeller. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.34 Score=60.56 Aligned_cols=188 Identities=16% Similarity=0.217 Sum_probs=113.5
Q ss_pred EEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCc-EEEEEEEeecCCCcEEEEEECCC-----eEEEE
Q 000602 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHW-VFDVCFLKVCNGNRSLAIGCSDN-----SIRVW 162 (1398)
Q Consensus 90 ~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~-V~~v~fsp~~~dg~~Latgs~Dg-----~V~vW 162 (1398)
.++.+. +|.|.+++-. ++.++.+..+... |..+-... ...+|++-+.|. .++||
T Consensus 37 ~vvigt~~G~V~~Ln~s----------------~~~~~~fqa~~~siv~~L~~~~---~~~~L~sv~Ed~~~np~llkiw 97 (933)
T KOG2114|consen 37 SVVIGTADGRVVILNSS----------------FQLIRGFQAYEQSIVQFLYILN---KQNFLFSVGEDEQGNPVLLKIW 97 (933)
T ss_pred eEEEeeccccEEEeccc----------------ceeeehheecchhhhhHhhccc---CceEEEEEeecCCCCceEEEEe
Confidence 444433 6777766643 4555667677666 33333332 335777766554 58999
Q ss_pred EcCCC------eEEEE---E--ccC-CcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCC
Q 000602 163 DISNS------SIILE---V--HSP-ERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1398)
Q Consensus 163 d~~~~------~~~~~---l--~~~-~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~ 230 (1398)
+++.- .++.. + ..| ...+..++++ +.+-..+|.|-.+|.|..+.-+--
T Consensus 98 ~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~V---s~~l~~Iv~Gf~nG~V~~~~GDi~----------------- 157 (933)
T KOG2114|consen 98 DLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAV---SEDLKTIVCGFTNGLVICYKGDIL----------------- 157 (933)
T ss_pred cccccCCCCCcceeeeeeeeccCCCCCCCcceEEEE---EccccEEEEEecCcEEEEEcCcch-----------------
Confidence 99642 23311 1 222 2334445555 445778999999999999875400
Q ss_pred CCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCcc
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNAR 310 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~ 310 (1398)
+..+....-...-..+|+++++..++..++-+.....|.+|.+..... .. ..+..|...
T Consensus 158 ------------RDrgsr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p-----~~----~~ld~~G~~ 216 (933)
T KOG2114|consen 158 ------------RDRGSRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTP-----SL----KVLDNNGIS 216 (933)
T ss_pred ------------hccccceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCc-----ce----eeeccCCcc
Confidence 001222222333468999999999998744444455899999985431 11 256778888
Q ss_pred EEEEEEcC-CE-EEEEeCCCcEEEEcCCCc
Q 000602 311 VWDCCLTD-SF-IITAGEDCTCRVWGSDGK 338 (1398)
Q Consensus 311 V~~l~~s~-~~-l~sgs~Dg~i~vWd~~g~ 338 (1398)
+.|..+++ .. +++|+ ...+.+|+.+++
T Consensus 217 lnCss~~~~t~qfIca~-~e~l~fY~sd~~ 245 (933)
T KOG2114|consen 217 LNCSSFSDGTYQFICAG-SEFLYFYDSDGR 245 (933)
T ss_pred ceeeecCCCCccEEEec-CceEEEEcCCCc
Confidence 99999983 33 55554 346889998543
|
|
| >KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=96.38 E-value=0.0026 Score=77.75 Aligned_cols=197 Identities=10% Similarity=0.133 Sum_probs=124.5
Q ss_pred cceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 121 ~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
+++..++++.|+...+|++|+. +..+|++|+..|.|+++++.+|.......+|...+ .....+.+|...++.+
T Consensus 1090 RFr~w~~frd~~~~fTc~afs~---~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~Sav----T~vePs~dgs~~Ltss 1162 (1516)
T KOG1832|consen 1090 RFRSWRSFRDETALFTCIAFSG---GTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAV----TLVEPSVDGSTQLTSS 1162 (1516)
T ss_pred hcccchhhhccccceeeEEeec---CCceEEeeeccceEEEEEccCcccccccccccccc----ccccccCCcceeeeec
Confidence 4677788889999999999998 88999999999999999999998877777766432 2233356777766655
Q ss_pred CCC--eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCC
Q 000602 201 IYN--EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1398)
Q Consensus 201 ~dg--~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg 278 (1398)
... -..+|++. ..+.+.+.+.+ -.++.|+..-..-+.|..-.
T Consensus 1163 s~S~PlsaLW~~~--------------------------------s~~~~~Hsf~e----d~~vkFsn~~q~r~~gt~~d 1206 (1516)
T KOG1832|consen 1163 SSSSPLSALWDAS--------------------------------STGGPRHSFDE----DKAVKFSNSLQFRALGTEAD 1206 (1516)
T ss_pred cccCchHHHhccc--------------------------------cccCccccccc----cceeehhhhHHHHHhccccc
Confidence 443 35567765 24445555543 34677876544434444445
Q ss_pred eEEEEEcCCCcccCCCCceE-eeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC-CCceEEEEecccCccEEEE
Q 000602 279 SARIWEVRAEYWKDSDSIEE-VGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC 354 (1398)
Q Consensus 279 ~V~iWd~~~~~~~~~~~~~~-i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~~~~V~sl 354 (1398)
.+.+||+.+... ... +. ...+....-.++.|+| .+++ .|| .+||+ ..+.+..|..... --.-
T Consensus 1207 ~a~~YDvqT~~~-----l~tylt--~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~aIh~FD~ft~--~~~G 1272 (1516)
T KOG1832|consen 1207 DALLYDVQTCSP-----LQTYLT--DTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEAIHRFDQFTD--YGGG 1272 (1516)
T ss_pred ceEEEecccCcH-----HHHhcC--cchhhhhhccccccCCCcceEe---eCc--eeeeeccHHHHhhhhhhee--cccc
Confidence 788999998765 221 10 1111222225566663 3333 344 36888 4444554443332 1134
Q ss_pred EEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 355 LYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 355 ~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
.|+|.|.-++.-+ -|||++.
T Consensus 1273 ~FHP~g~eVIINS-----EIwD~RT 1292 (1516)
T KOG1832|consen 1273 GFHPSGNEVIINS-----EIWDMRT 1292 (1516)
T ss_pred cccCCCceEEeec-----hhhhhHH
Confidence 5999999887765 4899853
|
|
| >PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators [] | Back alignment and domain information |
|---|
Probab=96.35 E-value=1.9 Score=48.32 Aligned_cols=166 Identities=11% Similarity=0.076 Sum_probs=90.6
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
...+.+|+|. |+ ...|++-. .+.|..++. +|+.++++......-..+|++. .++ .++++.
T Consensus 21 ~~e~SGLTy~--pd----~~tLfaV~d~~~~i~els~-~G~vlr~i~l~g~~D~EgI~y~-------g~~----~~vl~~ 82 (248)
T PF06977_consen 21 LDELSGLTYN--PD----TGTLFAVQDEPGEIYELSL-DGKVLRRIPLDGFGDYEGITYL-------GNG----RYVLSE 82 (248)
T ss_dssp -S-EEEEEEE--TT----TTEEEEEETTTTEEEEEET-T--EEEEEE-SS-SSEEEEEE--------STT----EEEEEE
T ss_pred cCCccccEEc--CC----CCeEEEEECCCCEEEEEcC-CCCEEEEEeCCCCCCceeEEEE-------CCC----EEEEEE
Confidence 3469999999 98 55565555 388888886 5888888875333358899988 554 566655
Q ss_pred c-CCeEEEEEecCCCCCCCCCCCcccccceeee--ecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCC---Ce
Q 000602 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQ--SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISN---SS 168 (1398)
Q Consensus 95 g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~--~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~---~~ 168 (1398)
. ++.+.++++......... . ..+.+. ....++..+-.++|.| .+..|.++-......+|.+.. ..
T Consensus 83 Er~~~L~~~~~~~~~~~~~~----~--~~~~~~l~~~~~~N~G~EGla~D~---~~~~L~v~kE~~P~~l~~~~~~~~~~ 153 (248)
T PF06977_consen 83 ERDQRLYIFTIDDDTTSLDR----A--DVQKISLGFPNKGNKGFEGLAYDP---KTNRLFVAKERKPKRLYEVNGFPGGF 153 (248)
T ss_dssp TTTTEEEEEEE----TT--E----E--EEEEEE---S---SS--EEEEEET---TTTEEEEEEESSSEEEEEEESTT-SS
T ss_pred cCCCcEEEEEEeccccccch----h--hceEEecccccCCCcceEEEEEcC---CCCEEEEEeCCCChhhEEEccccCcc
Confidence 4 789999999542200000 0 011111 1123556799999999 777777777777777777753 22
Q ss_pred EEEEEc-------cCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 169 IILEVH-------SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 169 ~~~~l~-------~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
.+.... .....-+.++.+++ ..+.+++-......|..+|..
T Consensus 154 ~~~~~~~~~~~~~~~~~~d~S~l~~~p--~t~~lliLS~es~~l~~~d~~ 201 (248)
T PF06977_consen 154 DLFVSDDQDLDDDKLFVRDLSGLSYDP--RTGHLLILSDESRLLLELDRQ 201 (248)
T ss_dssp --EEEE-HHHH-HT--SS---EEEEET--TTTEEEEEETTTTEEEEE-TT
T ss_pred ceeeccccccccccceeccccceEEcC--CCCeEEEEECCCCeEEEECCC
Confidence 211111 01111234455543 356677778888888888865
|
Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A. |
| >KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.23 E-value=0.081 Score=60.37 Aligned_cols=83 Identities=19% Similarity=0.215 Sum_probs=67.7
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCc-EEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT 200 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~-~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs 200 (1398)
++...-+.+|...|.+++|+| ... ++..++.+++|+|.|+++...+.....+ ..+++.+|-- .+..+|++|.
T Consensus 183 fkssq~lp~~g~~IrdlafSp---~~~GLl~~asl~nkiki~dlet~~~vssy~a~--~~~wSC~wDl--de~h~IYaGl 255 (463)
T KOG1645|consen 183 FKSSQILPGEGSFIRDLAFSP---FNEGLLGLASLGNKIKIMDLETSCVVSSYIAY--NQIWSCCWDL--DERHVIYAGL 255 (463)
T ss_pred cchhhcccccchhhhhhccCc---cccceeeeeccCceEEEEecccceeeeheecc--CCceeeeecc--CCcceeEEec
Confidence 445557778889999999999 544 7888999999999999998888777655 4577776632 3477999999
Q ss_pred CCCeEEEEEcc
Q 000602 201 IYNEIIVWKVD 211 (1398)
Q Consensus 201 ~dg~I~vWd~~ 211 (1398)
..|.|.++|++
T Consensus 256 ~nG~VlvyD~R 266 (463)
T KOG1645|consen 256 QNGMVLVYDMR 266 (463)
T ss_pred cCceEEEEEcc
Confidence 99999999998
|
|
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=96.15 E-value=0.014 Score=43.06 Aligned_cols=38 Identities=34% Similarity=0.605 Sum_probs=34.0
Q ss_pred eEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEE
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 247 ~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd 284 (1398)
.+...+..|...|.++.|.+++.++++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 44566778999999999999999999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.27 Score=63.06 Aligned_cols=126 Identities=13% Similarity=0.046 Sum_probs=82.7
Q ss_pred ceeEEEEEeCccCC-EEEEEEcC-----CCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-
Q 000602 245 TAVNLFRLVGHEGS-IFRIEWSS-----CGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT- 317 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~-I~~vafsp-----dg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s- 317 (1398)
.++.+.....|... |..++-.. +...-..|-.+..+..||.+-.... .+. .. ...+.......|++-+
T Consensus 513 ~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k---~v~-~~-~k~Y~~~~~Fs~~aTt~ 587 (794)
T PF08553_consen 513 RGKVVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNK---LVD-SQ-SKQYSSKNNFSCFATTE 587 (794)
T ss_pred CCcEEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCc---eee-cc-ccccccCCCceEEEecC
Confidence 56777777766644 55543221 1233456667778999999864320 011 00 1222344456777776
Q ss_pred CCEEEEEeCCCcEEEEcCCCceEEE-EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 318 DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 318 ~~~l~sgs~Dg~i~vWd~~g~~l~~-l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
..+||.|+.+|.||+||-.|+.-++ |.+-.. +|..|..+.||+||++.+ +..+.+++.
T Consensus 588 ~G~iavgs~~G~IRLyd~~g~~AKT~lp~lG~-pI~~iDvt~DGkwilaTc-~tyLlLi~t 646 (794)
T PF08553_consen 588 DGYIAVGSNKGDIRLYDRLGKRAKTALPGLGD-PIIGIDVTADGKWILATC-KTYLLLIDT 646 (794)
T ss_pred CceEEEEeCCCcEEeecccchhhhhcCCCCCC-CeeEEEecCCCcEEEEee-cceEEEEEE
Confidence 5899999999999999985554444 444444 899999999999988766 457777776
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals | Back alignment and domain information |
|---|
Probab=95.81 E-value=1.2 Score=53.48 Aligned_cols=177 Identities=11% Similarity=0.084 Sum_probs=94.1
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe-CCcEEEEECCCCeEEEEEEee-------eCccEEEEEEeccccccCCCCccce
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVF-------HGIRLHGISCNFINCTEGSVSTRVT 88 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~-dg~I~Iwd~~tg~~l~~~~~~-------~~~~V~~i~fs~~~~~~~pdg~~~~ 88 (1398)
.++|++++.|++ .++|+|+ +|.+.|.|++....+..-... ....|.++.|+..... .|+..-.
T Consensus 86 ~g~vtal~~S~i-------GFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~--~D~ySSi 156 (395)
T PF08596_consen 86 QGPVTALKNSDI-------GFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLG--GDGYSSI 156 (395)
T ss_dssp S-SEEEEEE-BT-------SEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-T--TSSSEEE
T ss_pred CCcEeEEecCCC-------cEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecC--CCcccce
Confidence 689999999943 6999999 799999999888888764322 2346888888844322 2221011
Q ss_pred eEEEEEcCCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec---------------CCC---cEE
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC---------------NGN---RSL 150 (1398)
Q Consensus 89 ~~la~~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~---------------~dg---~~L 150 (1398)
.+++....|.+.+|.+.... + +............+.+.|..+.....+ ..+ .-+
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~--~------g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~ 228 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSS--N------GRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGY 228 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-G--G------G-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EE
T ss_pred EEEEEeCCCCEEEEEEecCC--C------CceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcE
Confidence 34444558999999986321 0 111122222334566777777643200 000 123
Q ss_pred EEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecC--CCCCcEEEEEECCCeEEEEEcc
Q 000602 151 AIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGD--NLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 151 atgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~--s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
++...+..++++...+.+...+.. ........+.+... ...+..|++-..+|.|+++.+.
T Consensus 229 vVvvSe~~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~~~Lv~l~~~G~i~i~SLP 290 (395)
T PF08596_consen 229 VVVVSESDIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGGYCLVCLFNNGSIRIYSLP 290 (395)
T ss_dssp EEEE-SSEEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEEEEEEEEETTSEEEEEETT
T ss_pred EEEEcccceEEEeCCCCcccceee-ccccccceEEEEeecccCCceEEEEEECCCcEEEEECC
Confidence 344457889999998877665544 22122222333211 1246678888999999999997
|
The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A. |
| >PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins | Back alignment and domain information |
|---|
Probab=95.67 E-value=0.53 Score=60.54 Aligned_cols=153 Identities=10% Similarity=0.076 Sum_probs=96.1
Q ss_pred CCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCC
Q 000602 35 LPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1398)
Q Consensus 35 g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~ 112 (1398)
..+|+... ...|+-.|++.|+.+..+..+...+|..++.....-.-.+ +..++..+++.+..||.+... .
T Consensus 493 ~~mil~~~~~~~~ly~mDLe~GKVV~eW~~~~~~~v~~~~p~~K~aqlt~-----e~tflGls~n~lfriDpR~~~---~ 564 (794)
T PF08553_consen 493 RNMILLDPNNPNKLYKMDLERGKVVEEWKVHDDIPVVDIAPDSKFAQLTN-----EQTFLGLSDNSLFRIDPRLSG---N 564 (794)
T ss_pred cceEeecCCCCCceEEEecCCCcEEEEeecCCCcceeEecccccccccCC-----CceEEEECCCceEEeccCCCC---C
Confidence 45655543 3789999999999999999887656776654311000012 257888889999999988532 0
Q ss_pred CCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCC
Q 000602 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d 192 (1398)
. .+ ....+.+ .......|++-.. + .+||+|+.+|.||+||- .|..-++.-..-+..+..+.. +.|
T Consensus 565 k-----~v-~~~~k~Y-~~~~~Fs~~aTt~---~-G~iavgs~~G~IRLyd~-~g~~AKT~lp~lG~pI~~iDv---t~D 629 (794)
T PF08553_consen 565 K-----LV-DSQSKQY-SSKNNFSCFATTE---D-GYIAVGSNKGDIRLYDR-LGKRAKTALPGLGDPIIGIDV---TAD 629 (794)
T ss_pred c-----ee-ecccccc-ccCCCceEEEecC---C-ceEEEEeCCCcEEeecc-cchhhhhcCCCCCCCeeEEEe---cCC
Confidence 0 00 0011111 2234566776654 4 46899999999999995 333333333334556667766 788
Q ss_pred CcEEEEEECCCeEEEEEcc
Q 000602 193 ALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 193 ~~~lasgs~dg~I~vWd~~ 211 (1398)
|.+|++.+ +..|.+.+..
T Consensus 630 GkwilaTc-~tyLlLi~t~ 647 (794)
T PF08553_consen 630 GKWILATC-KTYLLLIDTL 647 (794)
T ss_pred CcEEEEee-cceEEEEEEe
Confidence 99888766 4567777754
|
Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ]. |
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=95.50 E-value=5.1 Score=47.62 Aligned_cols=200 Identities=14% Similarity=0.168 Sum_probs=93.7
Q ss_pred CCEEEEEe--CCcEEEEECCC----CeEEEEEEe---eeC---ccEEEEEEeccccccCCCCccceeEEEEEcC------
Q 000602 35 LPFLLAGS--GSQVLLYDLEA----GTLIRPFQV---FHG---IRLHGISCNFINCTEGSVSTRVTFEVALFGE------ 96 (1398)
Q Consensus 35 g~lLaag~--dg~I~Iwd~~t----g~~l~~~~~---~~~---~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd------ 96 (1398)
.++|.+.+ .+.|+|.|+.+ .++.+.++. +.. ..-|.+..- |+|+ .++.+-|+
T Consensus 87 Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hcl-------p~G~---imIS~lGd~~G~g~ 156 (461)
T PF05694_consen 87 RRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCL-------PDGR---IMISALGDADGNGP 156 (461)
T ss_dssp S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE--------SS-----EEEEEEEETTS-S-
T ss_pred CCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeec-------CCcc---EEEEeccCCCCCCC
Confidence 67777776 58999999984 355555542 111 123334333 7772 44544441
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeeccc---CCCcEEEEEEEeecCCCcEEEEEE-------------------
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR---LSHWVFDVCFLKVCNGNRSLAIGC------------------- 154 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~---h~~~V~~v~fsp~~~dg~~Latgs------------------- 154 (1398)
+.+.++|-++ +........ ...--.++-+.| ..+.++|..
T Consensus 157 Ggf~llD~~t---------------f~v~g~We~~~~~~~~gYDfw~qp---r~nvMiSSeWg~P~~~~~Gf~~~d~~~~ 218 (461)
T PF05694_consen 157 GGFVLLDGET---------------FEVKGRWEKDRGPQPFGYDFWYQP---RHNVMISSEWGAPSMFEKGFNPEDLEAG 218 (461)
T ss_dssp -EEEEE-TTT-----------------EEEE--SB-TT------EEEET---TTTEEEE-B---HHHHTT---TTTHHHH
T ss_pred CcEEEEcCcc---------------ccccceeccCCCCCCCCCCeEEcC---CCCEEEEeccCChhhcccCCChhHhhcc
Confidence 4566666553 122222111 122335566666 555555532
Q ss_pred -CCCeEEEEEcCCCeEEEEEccCC-cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCC
Q 000602 155 -SDNSIRVWDISNSSIILEVHSPE-RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232 (1398)
Q Consensus 155 -~Dg~V~vWd~~~~~~~~~l~~~~-~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~ 232 (1398)
..+++.+||+.+.+.++++.-+. ......++|..+.....-++.+.-..+|..|--..+
T Consensus 219 ~yG~~l~vWD~~~r~~~Q~idLg~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~------------------- 279 (461)
T PF05694_consen 219 KYGHSLHVWDWSTRKLLQTIDLGEEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDD------------------- 279 (461)
T ss_dssp -S--EEEEEETTTTEEEEEEES-TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ET-------------------
T ss_pred cccCeEEEEECCCCcEeeEEecCCCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCC-------------------
Confidence 35689999999999999988554 446677888665433434444445556666654200
Q ss_pred CcceeeecccccceeEEEEEeC-----------------ccCCEEEEEEcCCCCEEE-EEECCCeEEEEEcCCCcc
Q 000602 233 DFKCFKLQDQQHTAVNLFRLVG-----------------HEGSIFRIEWSSCGSKLV-SVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 233 ~~~~i~i~~~~~~~~~~~~l~g-----------------H~~~I~~vafspdg~~La-S~s~Dg~V~iWd~~~~~~ 290 (1398)
+. | ..+.+..+.. -..-|+.|..|.|.++|. ++-.+|.||.||+.+...
T Consensus 280 --g~---W----~a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 280 --GE---W----AAEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp --TE---E----EEEEEEEE--EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred --CC---e----eeeEEEECCCcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 00 1 1111111111 135588999999999885 555799999999998766
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >smart00320 WD40 WD40 repeats | Back alignment and domain information |
|---|
Probab=95.44 E-value=0.026 Score=41.54 Aligned_cols=38 Identities=29% Similarity=0.488 Sum_probs=33.2
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEE
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd 163 (1398)
+....+..|...|.++.|.+ ++..+++++.|+.+++|+
T Consensus 3 ~~~~~~~~~~~~i~~~~~~~---~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 3 ELLKTLKGHTGPVTSVAFSP---DGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEEEecCCceeEEEECC---CCCEEEEecCCCeEEEcC
Confidence 44566678899999999999 889999999999999996
|
Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain. |
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.24 E-value=8.8 Score=45.82 Aligned_cols=59 Identities=17% Similarity=0.207 Sum_probs=42.6
Q ss_pred CCEEEE----------EeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEe
Q 000602 35 LPFLLA----------GSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFEL 104 (1398)
Q Consensus 35 g~lLaa----------g~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl 104 (1398)
+++++. ...+.+.|||+++++....... . ..+....|| |+| ..++...++.|.++++
T Consensus 4 ~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~-~~~~~~~~s-------P~g----~~~~~v~~~nly~~~~ 70 (353)
T PF00930_consen 4 GKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-P-PKLQDAKWS-------PDG----KYIAFVRDNNLYLRDL 70 (353)
T ss_dssp SSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-E-TTBSEEEE--------SSS----TEEEEEETTEEEEESS
T ss_pred CCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-c-cccccceee-------cCC----CeeEEEecCceEEEEC
Confidence 677766 2336799999999876443332 2 368889999 998 6888888899999987
Q ss_pred cC
Q 000602 105 NF 106 (1398)
Q Consensus 105 ~~ 106 (1398)
..
T Consensus 71 ~~ 72 (353)
T PF00930_consen 71 AT 72 (353)
T ss_dssp TT
T ss_pred CC
Confidence 64
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=95.17 E-value=1.2 Score=42.72 Aligned_cols=69 Identities=22% Similarity=0.341 Sum_probs=49.5
Q ss_pred EEEEEEEeecCCC-cEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 135 VFDVCFLKVCNGN-RSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 135 V~~v~fsp~~~dg-~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
|+++++..++.+| ..|++|+.|..||+|+-+ +.+.++..... +.++.. .....++.+..+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~--e~~~Ei~e~~~--v~~L~~----~~~~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGD--EIVAEITETDK--VTSLCS----LGGGRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCC--cEEEEEecccc--eEEEEE----cCCCEEEEEecCCEEEEEeCc
Confidence 7788888765454 478899999999999854 55666654443 333332 234679999999999999865
|
|
| >PRK02888 nitrous-oxide reductase; Validated | Back alignment and domain information |
|---|
Probab=95.17 E-value=0.93 Score=56.33 Aligned_cols=71 Identities=10% Similarity=0.075 Sum_probs=51.0
Q ss_pred CcEEEEEEEeecCCCcEEEEEE-CCCeEEEEEcCCCeE------------EEEEccCCcceEEEEEeecCCCCCcEEEEE
Q 000602 133 HWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSI------------ILEVHSPERCLLYSMKLWGDNLEALRIASG 199 (1398)
Q Consensus 133 ~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vWd~~~~~~------------~~~l~~~~~~~~~s~~~~~~s~d~~~lasg 199 (1398)
...+.++++| ||+++++++ .+++|.|.|+.+.+. ..+++...+.+ ...| +.+|....+-
T Consensus 321 KsPHGV~vSP---DGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGlGPL--HTaF---Dg~G~aytsl 392 (635)
T PRK02888 321 KNPHGVNTSP---DGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGLGPL--HTAF---DGRGNAYTTL 392 (635)
T ss_pred CCccceEECC---CCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCCCcc--eEEE---CCCCCEEEeE
Confidence 4568899999 999877654 599999999987542 33433322222 2233 6678777788
Q ss_pred ECCCeEEEEEcc
Q 000602 200 TIYNEIIVWKVD 211 (1398)
Q Consensus 200 s~dg~I~vWd~~ 211 (1398)
..|.+|..|++.
T Consensus 393 f~dsqv~kwn~~ 404 (635)
T PRK02888 393 FLDSQIVKWNIE 404 (635)
T ss_pred eecceeEEEehH
Confidence 899999999987
|
|
| >PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=95.14 E-value=7.1 Score=46.64 Aligned_cols=276 Identities=14% Similarity=0.083 Sum_probs=136.6
Q ss_pred CcEEEEeCCcCe------eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEE-EEEeeeC-----------
Q 000602 4 KDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIR-PFQVFHG----------- 65 (1398)
Q Consensus 4 ~tv~iWdl~~~~------h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~-~~~~~~~----------- 65 (1398)
+...|+|+.+++ ....+....|| |+ |+++|...++.|.+++..+++..+ +..+ ..
T Consensus 23 ~~y~i~d~~~~~~~~l~~~~~~~~~~~~s--P~----g~~~~~v~~~nly~~~~~~~~~~~lT~dg-~~~i~nG~~dwvy 95 (353)
T PF00930_consen 23 GDYYIYDIETGEITPLTPPPPKLQDAKWS--PD----GKYIAFVRDNNLYLRDLATGQETQLTTDG-EPGIYNGVPDWVY 95 (353)
T ss_dssp EEEEEEETTTTEEEESS-EETTBSEEEE---SS----STEEEEEETTEEEEESSTTSEEEESES---TTTEEESB--HHH
T ss_pred eeEEEEecCCCceEECcCCccccccceee--cC----CCeeEEEecCceEEEECCCCCeEEecccc-ceeEEcCccceec
Confidence 356789999876 23568889999 99 999999999999999998885543 2122 11
Q ss_pred -----ccEEEEEEeccccccCCCCccceeEEEEEc--CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEE
Q 000602 66 -----IRLHGISCNFINCTEGSVSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDV 138 (1398)
Q Consensus 66 -----~~V~~i~fs~~~~~~~pdg~~~~~~la~~g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v 138 (1398)
.+-.++-|| ||| ..||... +..|+.+.+...... .. ---.+..+
T Consensus 96 eEEv~~~~~~~~WS-------pd~----~~la~~~~d~~~v~~~~~~~~~~~-----------~~-------~yp~~~~~ 146 (353)
T PF00930_consen 96 EEEVFDRRSAVWWS-------PDS----KYLAFLRFDEREVPEYPLPDYSPP-----------DS-------QYPEVESI 146 (353)
T ss_dssp HHHTSSSSBSEEE--------TTS----SEEEEEEEE-TTS-EEEEEEESSS-----------TE-------SS-EEEEE
T ss_pred cccccccccceEEC-------CCC----CEEEEEEECCcCCceEEeeccCCc-----------cc-------cCCccccc
Confidence 112445567 888 4555543 666666665431100 00 00123344
Q ss_pred EEEeecCCCcEEEEEECCCeEEEEEcCCCeEE-EEEc---cCCcceEEEEEeecCCCCCc-EE-EEEECCC---eEEEEE
Q 000602 139 CFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVH---SPERCLLYSMKLWGDNLEAL-RI-ASGTIYN---EIIVWK 209 (1398)
Q Consensus 139 ~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~-~~l~---~~~~~~~~s~~~~~~s~d~~-~l-asgs~dg---~I~vWd 209 (1398)
.+-- -|...... .+.|+|+.+++.. .... ......+..+.|. +++. ++ ..-..+. .+.+.|
T Consensus 147 ~YPk---~G~~np~v----~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~---~d~~~l~~~~~nR~q~~~~l~~~d 216 (353)
T PF00930_consen 147 RYPK---AGDPNPRV----SLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWS---PDGKRLWVQWLNRDQNRLDLVLCD 216 (353)
T ss_dssp E--B---TTS---EE----EEEEEESSSTCCCEE---HHHHTSSEEEEEEEEE---ETTEEEEEEEEETTSTEEEEEEEE
T ss_pred ccCC---CCCcCCce----EEEEEECCCCcEEEeeeccccCCCccCcccceec---CCCcEEEEEEcccCCCEEEEEEEE
Confidence 4422 22222111 3667888777653 1222 2334455556653 3444 22 2233332 233444
Q ss_pred cccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCE---EEEEEc-CCCC-EEEEEECCCeEEEEE
Q 000602 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI---FRIEWS-SCGS-KLVSVSDDRSARIWE 284 (1398)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I---~~vafs-pdg~-~LaS~s~Dg~V~iWd 284 (1398)
..++ ..+.+.. ....++| ....|. +++. +|.....||.-+|+-
T Consensus 217 ~~tg-------------------------------~~~~~~~-e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 217 ASTG-------------------------------ETRVVLE-ETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp ECTT-------------------------------TCEEEEE-EESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CCCC-------------------------------ceeEEEE-ecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 4311 1111111 1122332 244454 6555 444455777666665
Q ss_pred cCCCcccCCCCceEeeeeEEecCCccEEE-EEEc--C-CEEEEEeCCC--cEEEEc--CC-CceEEEEecccCccEEEEE
Q 000602 285 VRAEYWKDSDSIEEVGSSVLYGHNARVWD-CCLT--D-SFIITAGEDC--TCRVWG--SD-GKQLKMIKEHIGRGIWRCL 355 (1398)
Q Consensus 285 ~~~~~~~~~~~~~~i~~~~~~gh~~~V~~-l~~s--~-~~l~sgs~Dg--~i~vWd--~~-g~~l~~l~~h~~~~V~sl~ 355 (1398)
+...... . ..+....-.|.. +.++ + ...++|..+. .-.||. ++ +..+..+....+.. ..+.
T Consensus 265 ~~~~~~~----~-----~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~~p~~r~lY~v~~~~~~~~~~LT~~~~~~-~~~~ 334 (353)
T PF00930_consen 265 YDLDGGK----P-----RQLTSGDWEVTSILGWDEDNNRIYFTANGDNPGERHLYRVSLDSGGEPKCLTCEDGDH-YSAS 334 (353)
T ss_dssp EETTSSE----E-----EESS-SSS-EEEEEEEECTSSEEEEEESSGGTTSBEEEEEETTETTEEEESSTTSSTT-EEEE
T ss_pred Ecccccc----e-----eccccCceeecccceEcCCCCEEEEEecCCCCCceEEEEEEeCCCCCeEeccCCCCCc-eEEE
Confidence 5443220 1 133333445644 3444 2 3455666533 444554 46 77777777666632 5899
Q ss_pred EcCCCCEEEEEE
Q 000602 356 YDSLSSLLVTAG 367 (1398)
Q Consensus 356 ~spdg~~latgg 367 (1398)
|+|++++++-..
T Consensus 335 ~Spdg~y~v~~~ 346 (353)
T PF00930_consen 335 FSPDGKYYVDTY 346 (353)
T ss_dssp E-TTSSEEEEEE
T ss_pred ECCCCCEEEEEE
Confidence 999999776543
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.11 E-value=3.1 Score=50.88 Aligned_cols=225 Identities=12% Similarity=0.071 Sum_probs=108.5
Q ss_pred ceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCe
Q 000602 19 EISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKR 98 (1398)
Q Consensus 19 ~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~ 98 (1398)
....+.++ |+ +++++++++|.-.||.....+... .+ .-....|. +.+ .+.+.-..++
T Consensus 34 ~p~~ls~n--pn----gr~v~V~g~geY~iyt~~~~r~k~--~G----~g~~~vw~-------~~n----~yAv~~~~~~ 90 (443)
T PF04053_consen 34 YPQSLSHN--PN----GRFVLVCGDGEYEIYTALAWRNKA--FG----SGLSFVWS-------SRN----RYAVLESSST 90 (443)
T ss_dssp --SEEEE---TT----SSEEEEEETTEEEEEETTTTEEEE--EE----E-SEEEE--------TSS----EEEEE-TTS-
T ss_pred CCeeEEEC--CC----CCEEEEEcCCEEEEEEccCCcccc--cC----ceeEEEEe-------cCc----cEEEEECCCe
Confidence 35788899 98 999999999999999955544422 11 23346687 654 4444444788
Q ss_pred EEEEE-ecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCC
Q 000602 99 VKLFE-LNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPE 177 (1398)
Q Consensus 99 V~vwd-l~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~ 177 (1398)
|.|+. ++. . ....+.- ...+..+- .|.+|+..+. +.|.+||+.+++.+.++..+.
T Consensus 91 I~I~kn~~~-~---------------~~k~i~~-~~~~~~If------~G~LL~~~~~-~~i~~yDw~~~~~i~~i~v~~ 146 (443)
T PF04053_consen 91 IKIYKNFKN-E---------------VVKSIKL-PFSVEKIF------GGNLLGVKSS-DFICFYDWETGKLIRRIDVSA 146 (443)
T ss_dssp EEEEETTEE-----------------TT------SS-EEEEE-------SSSEEEEET-TEEEEE-TTT--EEEEESS-E
T ss_pred EEEEEcCcc-c---------------cceEEcC-CcccceEE------cCcEEEEECC-CCEEEEEhhHcceeeEEecCC
Confidence 99973 321 1 0011110 01122221 2566766654 489999999999999998553
Q ss_pred cceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccC
Q 000602 178 RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257 (1398)
Q Consensus 178 ~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~ 257 (1398)
+..+.| ++++.+++-.+. ..+.+++......... ...+ -...+..+.....
T Consensus 147 ---vk~V~W---s~~g~~val~t~-~~i~il~~~~~~~~~~---------~~~g-------------~e~~f~~~~E~~~ 197 (443)
T PF04053_consen 147 ---VKYVIW---SDDGELVALVTK-DSIYILKYNLEAVAAI---------PEEG-------------VEDAFELIHEISE 197 (443)
T ss_dssp ----EEEEE----TTSSEEEEE-S--SEEEEEE-HHHHHHB---------TTTB--------------GGGEEEEEEE-S
T ss_pred ---CcEEEE---ECCCCEEEEEeC-CeEEEEEecchhcccc---------cccC-------------chhceEEEEEecc
Confidence 233333 577888888874 4788877651100000 0000 0112333333356
Q ss_pred CEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCCcEEEEcC
Q 000602 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 258 ~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg~i~vWd~ 335 (1398)
.|.+..|..| .++-.... .++- +-.+.. . .+..-..++.=+.+.+ +.++....|+.+..+.+
T Consensus 198 ~IkSg~W~~d--~fiYtT~~-~lkY--l~~Ge~------~-----~i~~ld~~~yllgy~~~~~~ly~~Dr~~~v~~~~l 261 (443)
T PF04053_consen 198 RIKSGCWVED--CFIYTTSN-HLKY--LVNGET------G-----IIAHLDKPLYLLGYLPKENRLYLIDRDGNVISYEL 261 (443)
T ss_dssp --SEEEEETT--EEEEE-TT-EEEE--EETTEE------E-----EEEE-SS--EEEEEETTTTEEEEE-TT--EEEEE-
T ss_pred eeEEEEEEcC--EEEEEcCC-eEEE--EEcCCc------c-----eEEEcCCceEEEEEEccCCEEEEEECCCCEEEEEE
Confidence 7888888765 33333333 5555 333332 1 2222234555555655 77777778877777766
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=94.98 E-value=6.1 Score=44.22 Aligned_cols=116 Identities=14% Similarity=0.155 Sum_probs=74.7
Q ss_pred EEEEEEecCCCCCCCCEEEEEe--C-CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCC
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS--G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEK 97 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~--d-g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~ 97 (1398)
-.+.|. .+ +.++-+.+ + ..|+.+|+++|+.+.+.......-=.||+.. .|- ...+++-++
T Consensus 48 QGL~~~--~~----g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-------~d~----l~qLTWk~~ 110 (264)
T PF05096_consen 48 QGLEFL--DD----GTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-------GDK----LYQLTWKEG 110 (264)
T ss_dssp EEEEEE--ET----TEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-------TTE----EEEEESSSS
T ss_pred ccEEec--CC----CEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-------CCE----EEEEEecCC
Confidence 467775 44 44444433 2 5899999999998887776544444567776 442 667778899
Q ss_pred eEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 98 ~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
...+||.++ ++.+.++.- ...=|.++ . +++.|+.......+.++|..+-+...++.
T Consensus 111 ~~f~yd~~t---------------l~~~~~~~y-~~EGWGLt--~---dg~~Li~SDGS~~L~~~dP~~f~~~~~i~ 166 (264)
T PF05096_consen 111 TGFVYDPNT---------------LKKIGTFPY-PGEGWGLT--S---DGKRLIMSDGSSRLYFLDPETFKEVRTIQ 166 (264)
T ss_dssp EEEEEETTT---------------TEEEEEEE--SSS--EEE--E---CSSCEEEE-SSSEEEEE-TTT-SEEEEEE
T ss_pred eEEEEcccc---------------ceEEEEEec-CCcceEEE--c---CCCEEEEECCccceEEECCcccceEEEEE
Confidence 999999986 555555542 23445666 3 77777777667789999998877666554
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=94.87 E-value=15 Score=46.24 Aligned_cols=31 Identities=10% Similarity=0.186 Sum_probs=25.9
Q ss_pred cCCEEEEEeCCCcEEEEcC-CCceEEEEeccc
Q 000602 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1398)
Q Consensus 317 s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~ 347 (1398)
.+.+++.++.||.++.+|. +|+.+..++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw~~~~g~ 502 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELWKFKTGS 502 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeEEEeCCC
Confidence 3577888888999999999 999998887653
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=94.81 E-value=9.6 Score=43.57 Aligned_cols=254 Identities=13% Similarity=0.115 Sum_probs=125.4
Q ss_pred CCEEEEEeCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCCC
Q 000602 35 LPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 35 g~lLaag~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~~ 114 (1398)
++.|+.|++.-|.+|+........... +..+|..+... |+- ..+++-.|+.+.++++..-.......
T Consensus 7 ~~~L~vGt~~Gl~~~~~~~~~~~~~i~--~~~~I~ql~vl-------~~~----~~llvLsd~~l~~~~L~~l~~~~~~~ 73 (275)
T PF00780_consen 7 GDRLLVGTEDGLYVYDLSDPSKPTRIL--KLSSITQLSVL-------PEL----NLLLVLSDGQLYVYDLDSLEPVSTSA 73 (275)
T ss_pred CCEEEEEECCCEEEEEecCCccceeEe--ecceEEEEEEe-------ccc----CEEEEEcCCccEEEEchhhccccccc
Confidence 678888885339999993332222222 12248999888 654 45555567999999998532111000
Q ss_pred CCcccccc-eeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC-----eEEEEEccCCcceEEEEEeec
Q 000602 115 QPETCVNL-SLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS-----SIILEVHSPERCLLYSMKLWG 188 (1398)
Q Consensus 115 ~~~~~~~~-~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~-----~~~~~l~~~~~~~~~s~~~~~ 188 (1398)
..... .. .....+ .....+...+.........+|+++ ..++|.+|..... +..+++..+. .+.++.|.
T Consensus 74 ~~~~~-~~~~~~~~~-~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~ke~~lp~--~~~~i~~~- 147 (275)
T PF00780_consen 74 PLAFP-KSRSLPTKL-PETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLLKEISLPD--PPSSIAFL- 147 (275)
T ss_pred ccccc-ccccccccc-cccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccceeEEEEcCC--CcEEEEEe-
Confidence 00000 00 000011 122234444411111133455544 4568999888653 3455555553 35566663
Q ss_pred CCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCC
Q 000602 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCG 268 (1398)
Q Consensus 189 ~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg 268 (1398)
+..|+.|.. +...+.|+.++....... .......+........++..+.. +++
T Consensus 148 ----~~~i~v~~~-~~f~~idl~~~~~~~l~~---------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~ 200 (275)
T PF00780_consen 148 ----GNKICVGTS-KGFYLIDLNTGSPSELLD---------------------PSDSSSSFKSRNSSSKPLGIFQL-SDN 200 (275)
T ss_pred ----CCEEEEEeC-CceEEEecCCCCceEEeC---------------------ccCCcchhhhcccCCCceEEEEe-CCc
Confidence 456666664 447777877332211100 00000000011111223333333 345
Q ss_pred CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCCcEEEEcC-CCceEEEEeccc
Q 000602 269 SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1398)
Q Consensus 269 ~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg~i~vWd~-~g~~l~~l~~h~ 347 (1398)
.+|++. |..-.+-|...... + . ..+.- ...+.++++...+|+..+.++ |-||++ +++.++++....
T Consensus 201 e~Ll~~--~~~g~fv~~~G~~~------r--~-~~i~W-~~~p~~~~~~~pyli~~~~~~-iEV~~~~~~~lvQ~i~~~~ 267 (275)
T PF00780_consen 201 EFLLCY--DNIGVFVNKNGEPS------R--K-STIQW-SSAPQSVAYSSPYLIAFSSNS-IEVRSLETGELVQTIPLPN 267 (275)
T ss_pred eEEEEe--cceEEEEcCCCCcC------c--c-cEEEc-CCchhEEEEECCEEEEECCCE-EEEEECcCCcEEEEEECCC
Confidence 666543 33334444433221 1 0 01111 235567778778888877655 999999 888888887553
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >COG3204 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.62 E-value=4.4 Score=45.44 Aligned_cols=184 Identities=10% Similarity=0.042 Sum_probs=115.8
Q ss_pred cccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEE
Q 000602 128 LPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1398)
Q Consensus 128 l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~v 207 (1398)
+.|-...|.++.|+| +.+.|.+......-.||=..+|+.+.++.-..-.-.-.+.+ ..++.++++--.++.+.+
T Consensus 81 i~g~~~nvS~LTynp---~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Iey---ig~n~fvi~dER~~~l~~ 154 (316)
T COG3204 81 ILGETANVSSLTYNP---DTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEY---IGGNQFVIVDERDRALYL 154 (316)
T ss_pred cccccccccceeeCC---CcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEE---ecCCEEEEEehhcceEEE
Confidence 445556799999999 88888777777777887777899888876322211222333 245677777778899999
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
+.+.-.. .+...+. ..-++..........-+++|.|..+.|..+=+-.-++|+....
T Consensus 155 ~~vd~~t---------------------~~~~~~~--~~i~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 155 FTVDADT---------------------TVISAKV--QKIPLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred EEEcCCc---------------------cEEeccc--eEEeccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 8877110 0000000 0111112222255677899999999888888888888887764
Q ss_pred CcccCCCCceEeeeeEEecCC-------ccEEEEEEc---CCEEEEEeCCCcEEEEcCCCceEEEEeccc
Q 000602 288 EYWKDSDSIEEVGSSVLYGHN-------ARVWDCCLT---DSFIITAGEDCTCRVWGSDGKQLKMIKEHI 347 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~-------~~V~~l~~s---~~~l~sgs~Dg~i~vWd~~g~~l~~l~~h~ 347 (1398)
.... .... ....++ ..|.++.|. +.+++.+.+++.+.-.|..|..+..+..+.
T Consensus 212 ~~~~--l~~~-----~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~~~~~lsL~~ 274 (316)
T COG3204 212 SPSS--LSVH-----ASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGEVIELLSLTK 274 (316)
T ss_pred CCcc--cccc-----cccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCCeeeeEEecc
Confidence 3310 0000 111111 245667776 578888999999999999888776665443
|
|
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=94.51 E-value=14 Score=45.15 Aligned_cols=199 Identities=15% Similarity=0.112 Sum_probs=99.7
Q ss_pred EEEEEEcCCCCEEEEE-ECCC----eEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC--CEEEEEeCCC---
Q 000602 259 IFRIEWSSCGSKLVSV-SDDR----SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDC--- 328 (1398)
Q Consensus 259 I~~vafspdg~~LaS~-s~Dg----~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~--~~l~sgs~Dg--- 328 (1398)
+....++||++++|-+ +..| .+++.|+.+++. +.. .+.. ..-..+.|.+ ..|+....+.
T Consensus 126 ~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~-----l~d----~i~~--~~~~~~~W~~d~~~~~y~~~~~~~~ 194 (414)
T PF02897_consen 126 LGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKF-----LPD----GIEN--PKFSSVSWSDDGKGFFYTRFDEDQR 194 (414)
T ss_dssp EEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEE-----EEE----EEEE--EESEEEEECTTSSEEEEEECSTTTS
T ss_pred eeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcC-----cCC----cccc--cccceEEEeCCCCEEEEEEeCcccc
Confidence 3467899999988644 4444 599999999865 210 1111 1112378873 4544443332
Q ss_pred --------cEEEEcC-CCce--EEEEecccCcc-EEEEEEcCCCCEEEEEEcC----CcEEEEEcCCCCcccccCCCccc
Q 000602 329 --------TCRVWGS-DGKQ--LKMIKEHIGRG-IWRCLYDSLSSLLVTAGFD----SAIKVHQFQAFLPGSLESHPEAK 392 (1398)
Q Consensus 329 --------~i~vWd~-~g~~--l~~l~~h~~~~-V~sl~~spdg~~latgg~D----g~I~iwdl~~~~l~~l~~~~~~v 392 (1398)
.|+.|.+ +... ...+....... ...+..++++++|+..... ..+.+.++.... .
T Consensus 195 ~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~~----~------ 264 (414)
T PF02897_consen 195 TSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDGG----S------ 264 (414)
T ss_dssp S-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCTT----T------
T ss_pred cccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEeccccC----C------
Confidence 3777777 3322 34455544433 5678889999987654432 235555653210 0
Q ss_pred cccCCccEEEeeeCCCccceeeccCCCCcEEEEEEecCCeEEEEEc----CCcEEEEEeecCCCceeEEEEeec-CCccE
Q 000602 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATN----HGYLYHTKLCDMDSVNWNKILQVS-EGMPI 467 (1398)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~----~g~i~~~~l~~~~~~~w~~i~~~~-~~~~i 467 (1398)
....... +......+....-...+.+++.++ +++|+.+.+.+.....|..++-.+ ....+
T Consensus 265 ---~~~~~~~------------l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~l 329 (414)
T PF02897_consen 265 ---PDAKPKL------------LSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVSL 329 (414)
T ss_dssp ---SS-SEEE------------EEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEEE
T ss_pred ---CcCCcEE------------EeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCceeE
Confidence 0000111 111112233323233556776664 366776666555544565443333 33355
Q ss_pred EEEeccCCCCCCcCCCCcEEEEEeCCC--CEEEEEEc
Q 000602 468 ICMDLLSNEPKYPCGIDDWVALGDGKG--NMTIVRVV 502 (1398)
Q Consensus 468 ~~l~~~~~~~~~s~~~~~~la~gs~dG--~I~Iwd~~ 502 (1398)
..+.+. .+.+++.-..++ .|+++++.
T Consensus 330 ~~~~~~---------~~~Lvl~~~~~~~~~l~v~~~~ 357 (414)
T PF02897_consen 330 EDVSLF---------KDYLVLSYRENGSSRLRVYDLD 357 (414)
T ss_dssp EEEEEE---------TTEEEEEEEETTEEEEEEEETT
T ss_pred EEEEEE---------CCEEEEEEEECCccEEEEEECC
Confidence 555542 245666666666 56677766
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.35 E-value=1.3 Score=52.81 Aligned_cols=122 Identities=9% Similarity=0.005 Sum_probs=83.2
Q ss_pred ceeEEEEEeCccCCEEEEEEcCCCCE-------EEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCC----ccEEE
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSK-------LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN----ARVWD 313 (1398)
Q Consensus 245 ~~~~~~~l~gH~~~I~~vafspdg~~-------LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~----~~V~~ 313 (1398)
.++.+....-|.. |.-+.+.|+.+. -+.|-.|..|.-||++-... ..+ ....+|. ....|
T Consensus 365 ~GKIVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~------~kl--~~~q~kqy~~k~nFsc 435 (644)
T KOG2395|consen 365 RGKIVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFRIDPRVQGK------NKL--AVVQSKQYSTKNNFSC 435 (644)
T ss_pred cceeeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEEecccccCc------cee--eeeeccccccccccce
Confidence 5677777776665 777888886542 23455677888899884332 111 1333333 23445
Q ss_pred EEEc-CCEEEEEeCCCcEEEEcCCCceEEE-EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 314 CCLT-DSFIITAGEDCTCRVWGSDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 314 l~~s-~~~l~sgs~Dg~i~vWd~~g~~l~~-l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
.+-. ..+|+.||.+|.||+||-.+...++ +.+-.. +|..+..+.+|++|+..+ +..+.+.++
T Consensus 436 ~aTT~sG~IvvgS~~GdIRLYdri~~~AKTAlPgLG~-~I~hVdvtadGKwil~Tc-~tyLlLi~t 499 (644)
T KOG2395|consen 436 FATTESGYIVVGSLKGDIRLYDRIGRRAKTALPGLGD-AIKHVDVTADGKWILATC-KTYLLLIDT 499 (644)
T ss_pred eeecCCceEEEeecCCcEEeehhhhhhhhhcccccCC-ceeeEEeeccCcEEEEec-ccEEEEEEE
Confidence 5554 5899999999999999986655554 555555 799999999999987655 557777776
|
|
| >PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A | Back alignment and domain information |
|---|
Probab=94.33 E-value=14 Score=43.83 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=47.9
Q ss_pred EEEecCCCCCCCCEEEEEe-C--CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEE-EEcCCeE
Q 000602 24 CFVHLPSHLSSLPFLLAGS-G--SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVA-LFGEKRV 99 (1398)
Q Consensus 24 afs~~pd~~~~g~lLaag~-d--g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la-~~gd~~V 99 (1398)
+|. +| +.++|+++. + ..+.+.|+++++..+--.+ .+....+...+ |++ ..+. +..+++|
T Consensus 42 ~ft--~d---G~kllF~s~~dg~~nly~lDL~t~~i~QLTdg-~g~~~~g~~~s-------~~~----~~~~Yv~~~~~l 104 (386)
T PF14583_consen 42 CFT--DD---GRKLLFASDFDGNRNLYLLDLATGEITQLTDG-PGDNTFGGFLS-------PDD----RALYYVKNGRSL 104 (386)
T ss_dssp -B---TT---S-EEEEEE-TTSS-EEEEEETTT-EEEE---S-S-B-TTT-EE--------TTS----SEEEEEETTTEE
T ss_pred CcC--CC---CCEEEEEeccCCCcceEEEEcccCEEEECccC-CCCCccceEEe-------cCC----CeEEEEECCCeE
Confidence 455 56 346666666 3 6788899999887544433 22234455666 665 4444 4567889
Q ss_pred EEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEE
Q 000602 100 KLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 100 ~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~La 151 (1398)
+-.|+++.. .+.+. ....+++-...|... .++..++
T Consensus 105 ~~vdL~T~e-------------~~~vy--~~p~~~~g~gt~v~n-~d~t~~~ 140 (386)
T PF14583_consen 105 RRVDLDTLE-------------ERVVY--EVPDDWKGYGTWVAN-SDCTKLV 140 (386)
T ss_dssp EEEETTT---------------EEEEE--E--TTEEEEEEEEE--TTSSEEE
T ss_pred EEEECCcCc-------------EEEEE--ECCcccccccceeeC-CCccEEE
Confidence 888888632 23333 344567766777641 2555543
|
|
| >KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair] | Back alignment and domain information |
|---|
Probab=94.32 E-value=23 Score=45.89 Aligned_cols=452 Identities=13% Similarity=0.084 Sum_probs=210.3
Q ss_pred EEEEecCCCCCCCCEEEEEe-CCcEEEEECCC------CeEEEEEEe-eeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 23 LCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEA------GTLIRPFQV-FHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 23 lafs~~pd~~~~g~lLaag~-dg~I~Iwd~~t------g~~l~~~~~-~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
+.+. |. ++.+...- +|.+++-.+.+ +..+.-|.. ++.-.|..|+|- ..+.+. .+++..
T Consensus 119 ~~VD--p~----~R~Igl~~yqgl~~vIp~d~~~sht~~s~l~~fn~rfdel~v~Di~fl----y~~s~p----t~~vly 184 (1096)
T KOG1897|consen 119 LLVD--PK----GRVIGLHLYQGLFKVIPIDSDESHTGGSLLKAFNVRFDELNVYDIKFL----YGCSDP----TLAVLY 184 (1096)
T ss_pred EEEC--CC----CcEEEEEeecCeEEEEEecccccccCcccccccccccCcceEEEEEEE----cCCCCC----ceEEEE
Confidence 4455 76 67666655 68887777665 344433332 233358888886 222332 333333
Q ss_pred c---CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEE
Q 000602 95 G---EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIIL 171 (1398)
Q Consensus 95 g---d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~ 171 (1398)
. ++.++.|+++-.+ ..|.. ......+ .+. +.-+.--|. +.|..|+.|. ..|..-+- +....
T Consensus 185 ~Ds~~~Hv~~yelnl~~---ke~~~-----~~w~~~v-~~~--a~~li~VP~-~~gGvlV~ge--~~I~Y~~~--~~~~a 248 (1096)
T KOG1897|consen 185 KDSDGRHVKTYELNLRD---KEFVK-----GPWSNNV-DNG--ASMLIPVPS-PIGGVLVIGE--EFIVYMSG--DNFVA 248 (1096)
T ss_pred EcCCCcEEEEEEeccch---hhccc-----ccccccc-ccC--CceeeecCC-CCceEEEEee--eEEEEeeC--CceeE
Confidence 3 5778999887532 00000 0000001 111 111222221 1455565553 22322222 22221
Q ss_pred EEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc-cCCccccCCCCCCCCCCCCCCCcceeeecccccce-eEE
Q 000602 172 EVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD-WEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA-VNL 249 (1398)
Q Consensus 172 ~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~-~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~-~~~ 249 (1398)
.......+..+ +++-.-..++...+.|..+|.+...-+. +++.. .+ ...
T Consensus 249 i~p~~~~~~t~-~~~~~v~~~~~~yLl~d~~G~Lf~l~l~~~~e~~----------------------------s~~~lk 299 (1096)
T KOG1897|consen 249 IAPLTAEQSTI-VCYGRVDLQGSRYLLGDEDGMLFKLLLSHTGETV----------------------------SGLDLK 299 (1096)
T ss_pred ecccccCCceE-EEcccccCCccEEEEecCCCcEEEEEeecccccc----------------------------cceEEE
Confidence 11111111111 1111225677888889999988877665 11100 11 111
Q ss_pred EEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc------CCEEEE
Q 000602 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT------DSFIIT 323 (1398)
Q Consensus 250 ~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s------~~~l~s 323 (1398)
...-|-..-..++.+-++ ..|.+||.-|.-.+-.+.+.... +.....+ .-...-++|.+++.- ...++|
T Consensus 300 ve~lge~siassi~~L~n-g~lFvGS~~gdSqLi~L~~e~d~-gsy~~il---et~~NLgPI~Dm~Vvd~d~q~q~qivt 374 (1096)
T KOG1897|consen 300 VEYLGETSIASSINYLDN-GVLFVGSRFGDSQLIKLNTEPDV-GSYVVIL---ETFVNLGPIVDMCVVDLDRQGQGQIVT 374 (1096)
T ss_pred EEecCCcchhhhhhcccC-ceEEEeccCCceeeEEccccCCC-Cchhhhh---hhcccccceeeEEEEeccccCCceEEE
Confidence 223344455556665554 46778887776677766654321 1001111 112233467777664 246666
Q ss_pred Ee---CCCcEEEEcC--CCceEEEEecccCccEEEEE--EcCCC-CEEEEEEcCCcEEEEEcCCCCcccccCCCcccccc
Q 000602 324 AG---EDCTCRVWGS--DGKQLKMIKEHIGRGIWRCL--YDSLS-SLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFN 395 (1398)
Q Consensus 324 gs---~Dg~i~vWd~--~g~~l~~l~~h~~~~V~sl~--~spdg-~~latgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~ 395 (1398)
|+ .||++|+..- .=..+.......-+++|.+. ++++- .+|+. +.-+.-++..+.++...+ +. .+|+
T Consensus 375 CsGa~kdgSLRiiRngi~I~e~A~i~l~Gikg~w~lk~~v~~~~d~ylvl-sf~~eTrvl~i~~e~ee~-~~----~gf~ 448 (1096)
T KOG1897|consen 375 CSGAFKDGSLRIIRNGIGIDELASIDLPGIKGMWSLKSMVDENYDNYLVL-SFISETRVLNISEEVEET-ED----PGFS 448 (1096)
T ss_pred EeCCCCCCcEEEEecccccceeeEeecCCccceeEeeccccccCCcEEEE-EeccceEEEEEccceEEe-cc----cccc
Confidence 65 6899999875 22333333322233589988 54432 24443 344455666665431111 00 0111
Q ss_pred CCccEEEeeeC----------------CCccceeeccCCCCcEEEEEEecCCeEEEEEcCCcEEEEEeecCCCceeEEEE
Q 000602 396 GRTEIFSIKIP----------------NFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459 (1398)
Q Consensus 396 ~~~~~~~~~~~----------------~~~~~~~~~~~~~~~V~~lafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~ 459 (1398)
.+.+.+....- +.......|....+.....++....+.++++..+.++...+.+.. .+++.
T Consensus 449 ~~~~Tif~S~i~g~~lvQvTs~~iRl~ss~~~~~~W~~p~~~ti~~~~~n~sqVvvA~~~~~l~y~~i~~~~---l~e~~ 525 (1096)
T KOG1897|consen 449 TDEQTIFCSTINGNQLVQVTSNSIRLVSSAGLRSEWRPPGKITIGVVSANASQVVVAGGGLALFYLEIEDGG---LREVS 525 (1096)
T ss_pred ccCceEEEEccCCceEEEEecccEEEEcchhhhhcccCCCceEEEEEeecceEEEEecCccEEEEEEeeccc---eeeee
Confidence 11111111100 001122233333332233333333355666655665544443332 22344
Q ss_pred eecCCccEEEEeccCCCCCCcCCCCcEEEEEeCCCCEEEEEEc-CCccccceeeeeeeecCcccceeEEEEEecCCCcEE
Q 000602 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVV-GDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1398)
Q Consensus 460 ~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwd~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L 538 (1398)
+..-..++.|+|+.+-. ......+++++|.-+..+.+.-.. +...... ..+... .-++.++ +.++.-|..+|
T Consensus 526 ~~~~e~evaCLDisp~~--d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~--~~l~~~-~iPRSIl--~~~~e~d~~yL 598 (1096)
T KOG1897|consen 526 HKEFEYEVACLDISPLG--DAPNKSRLLAVGLWSDISMILTFLPDLILITH--EQLSGE-IIPRSIL--LTTFEGDIHYL 598 (1096)
T ss_pred eheecceeEEEecccCC--CCCCcceEEEEEeecceEEEEEECCCcceeee--eccCCC-ccchhee--eEEeeccceEE
Confidence 44446789999997542 001234589999877765554432 2221111 011111 1123332 23555668899
Q ss_pred EEEcCCCcEEEEecCC
Q 000602 539 FTADPKGRLKLWQLCD 554 (1398)
Q Consensus 539 ~s~s~dg~I~iWdi~~ 554 (1398)
.++..||.+..+.+..
T Consensus 599 lvalgdG~l~~fv~d~ 614 (1096)
T KOG1897|consen 599 LVALGDGALLYFVLDI 614 (1096)
T ss_pred EEEcCCceEEEEEEEc
Confidence 9999999988766553
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=94.26 E-value=0.017 Score=69.17 Aligned_cols=203 Identities=14% Similarity=0.200 Sum_probs=120.4
Q ss_pred CcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEE-EEEccCCcceEEEEEeecCCCCCcEEEEEE----CCCeEEE
Q 000602 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII-LEVHSPERCLLYSMKLWGDNLEALRIASGT----IYNEIIV 207 (1398)
Q Consensus 133 ~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~-~~l~~~~~~~~~s~~~~~~s~d~~~lasgs----~dg~I~v 207 (1398)
..+.|+++.-. .+...+++|.++|.|.+-.+....-. ..+..+....+.+++|. .-|...||+|- .|..+.|
T Consensus 57 qy~kcva~~y~-~d~cIlavG~atG~I~l~s~r~~hdSs~E~tp~~ar~Ct~lAwn--eLDtn~LAagldkhrnds~~~I 133 (783)
T KOG1008|consen 57 QYVKCVASFYG-NDRCILAVGSATGNISLLSVRHPHDSSAEVTPGYARPCTSLAWN--ELDTNHLAAGLDKHRNDSSLKI 133 (783)
T ss_pred CCceeehhhcC-CchhhhhhccccCceEEeecCCcccccceecccccccccccccc--cccHHHHHhhhhhhcccCCccc
Confidence 45677777651 13457899999999999887654322 23333333345555553 33667788873 5678999
Q ss_pred EEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCCeEEEEEcCC
Q 000602 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg~V~iWd~~~ 287 (1398)
||+.+.--.|. ....+.. +-.....+++|..+.+.+.+|...+.+.++|++.
T Consensus 134 wdi~s~ltvPk--------------------------e~~~fs~--~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlRq 185 (783)
T KOG1008|consen 134 WDINSLLTVPK--------------------------ESPLFSS--STLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLRQ 185 (783)
T ss_pred eecccccCCCc--------------------------ccccccc--ccccCccccccccCcchhhcccccchhhhhhhhh
Confidence 99873211110 0000111 1333445888988889999999999999999985
Q ss_pred CcccCCCCceEeeeeEEecCCccEEEEEE---cCCEEEEEeCCCcEEEEcC--C-CceEEEEecccC---ccEEEEEEcC
Q 000602 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCL---TDSFIITAGEDCTCRVWGS--D-GKQLKMIKEHIG---RGIWRCLYDS 358 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~~~V~~l~~---s~~~l~sgs~Dg~i~vWd~--~-g~~l~~l~~h~~---~~V~sl~~sp 358 (1398)
.... .. .-.+..+..+.. .++++++-. ||.+.+||. + ..++..+..... +.+..++|.|
T Consensus 186 s~~~----~~-------svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 186 SLDS----VS-------SVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCP 253 (783)
T ss_pred hhhh----hh-------hhhhhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEecc
Confidence 3220 11 111122333333 467887766 999999994 2 222222211111 1388999998
Q ss_pred CCC-EEEEEEc-CCcEEEEEcC
Q 000602 359 LSS-LLVTAGF-DSAIKVHQFQ 378 (1398)
Q Consensus 359 dg~-~latgg~-Dg~I~iwdl~ 378 (1398)
... .+++... .++|+++++.
T Consensus 254 trtglla~l~RdS~tIrlydi~ 275 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDIC 275 (783)
T ss_pred CCcchhhhhccCcceEEEeccc
Confidence 643 5555555 5789999983
|
|
| >PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region | Back alignment and domain information |
|---|
Probab=94.23 E-value=1.5 Score=42.09 Aligned_cols=99 Identities=16% Similarity=0.145 Sum_probs=66.6
Q ss_pred EEEEEEcC---CC-CEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-CCEEEEEeCCCcEEEE
Q 000602 259 IFRIEWSS---CG-SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVW 333 (1398)
Q Consensus 259 I~~vafsp---dg-~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-~~~l~sgs~Dg~i~vW 333 (1398)
|+++++.. || +.|+.||+|..||+|+-..- + .-......|.+++.. +..|+.+-++|+|-+|
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~-------~------~Ei~e~~~v~~L~~~~~~~F~Y~l~NGTVGvY 68 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI-------V------AEITETDKVTSLCSLGGGRFAYALANGTVGVY 68 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE-------E------EEEecccceEEEEEcCCCEEEEEecCCEEEEE
Confidence 56666654 33 57999999999999986542 1 223345667777766 6899999999999999
Q ss_pred cCCCceEEEEecccCccEEEEEE-cCC--CC-EEEEEEcCCcEE
Q 000602 334 GSDGKQLKMIKEHIGRGIWRCLY-DSL--SS-LLVTAGFDSAIK 373 (1398)
Q Consensus 334 d~~g~~l~~l~~h~~~~V~sl~~-spd--g~-~latgg~Dg~I~ 373 (1398)
+- ...+...+.... +.++++ ..+ |. -|++|-.+|.|-
T Consensus 69 ~~-~~RlWRiKSK~~--~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 69 DR-SQRLWRIKSKNQ--VTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred eC-cceeeeeccCCC--eEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 86 333444443333 556554 333 32 688888888774
|
|
| >KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=93.55 E-value=0.02 Score=68.54 Aligned_cols=188 Identities=13% Similarity=0.127 Sum_probs=111.5
Q ss_pred EEEEEc-CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE----CCCeEEEEEc
Q 000602 90 EVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC----SDNSIRVWDI 164 (1398)
Q Consensus 90 ~la~~g-d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs----~Dg~V~vWd~ 164 (1398)
+++++. +|.|.+-.+..... .-....++|....++++|++. |...||.|- .|-.+.|||+
T Consensus 72 IlavG~atG~I~l~s~r~~hd-------------Ss~E~tp~~ar~Ct~lAwneL--Dtn~LAagldkhrnds~~~Iwdi 136 (783)
T KOG1008|consen 72 ILAVGSATGNISLLSVRHPHD-------------SSAEVTPGYARPCTSLAWNEL--DTNHLAAGLDKHRNDSSLKIWDI 136 (783)
T ss_pred hhhhccccCceEEeecCCccc-------------ccceecccccccccccccccc--cHHHHHhhhhhhcccCCccceec
Confidence 444443 78888887765331 111234578889999999983 556777663 3668999999
Q ss_pred CCCeE--E--EEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeec
Q 000602 165 SNSSI--I--LEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240 (1398)
Q Consensus 165 ~~~~~--~--~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~ 240 (1398)
.++-. . ..+.........++++ ..+..+|.+|.....+.++|++..
T Consensus 137 ~s~ltvPke~~~fs~~~l~gqns~cw---lrd~klvlaGm~sr~~~ifdlRqs--------------------------- 186 (783)
T KOG1008|consen 137 NSLLTVPKESPLFSSSTLDGQNSVCW---LRDTKLVLAGMTSRSVHIFDLRQS--------------------------- 186 (783)
T ss_pred ccccCCCccccccccccccCcccccc---ccCcchhhcccccchhhhhhhhhh---------------------------
Confidence 87621 1 1111111111223433 246778888888888999888711
Q ss_pred ccccceeEEEEEeCccCCEEEEEEcC-CCCEEEEEECCCeEEEEEc-CCCcccCCCCceEeeeeEEecCCccEEEEEEcC
Q 000602 241 DQQHTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1398)
Q Consensus 241 ~~~~~~~~~~~l~gH~~~I~~vafsp-dg~~LaS~s~Dg~V~iWd~-~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~ 318 (1398)
......-.+..+..+...| .+.++++-+ |+.|-+||. ..-+. .++.+. ........++..++|.|
T Consensus 187 -------~~~~~svnTk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnien----pl~~i~-~~~N~~~~~l~~~aycP 253 (783)
T KOG1008|consen 187 -------LDSVSSVNTKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIEN----PLQIIL-RNENKKPKQLFALAYCP 253 (783)
T ss_pred -------hhhhhhhhhhhcccceecCCCCCceeccc-cCceeeccchhhhcc----HHHHHh-hCCCCcccceeeEEecc
Confidence 1111112344566778888 778888876 889999994 32111 011000 01111123578888884
Q ss_pred ---CEEEEEeCC-CcEEEEcC
Q 000602 319 ---SFIITAGED-CTCRVWGS 335 (1398)
Q Consensus 319 ---~~l~sgs~D-g~i~vWd~ 335 (1398)
..+++...| ++|+++|+
T Consensus 254 trtglla~l~RdS~tIrlydi 274 (783)
T KOG1008|consen 254 TRTGLLAVLSRDSITIRLYDI 274 (783)
T ss_pred CCcchhhhhccCcceEEEecc
Confidence 567777766 78999997
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=93.44 E-value=19 Score=41.86 Aligned_cols=118 Identities=10% Similarity=-0.044 Sum_probs=69.6
Q ss_pred eeEEEEEeCccCCEEEEEEcCCCCEEEEEEC-CCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEE
Q 000602 246 AVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD-DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFII 322 (1398)
Q Consensus 246 ~~~~~~l~gH~~~I~~vafspdg~~LaS~s~-Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~ 322 (1398)
+..+..+..|-..-++|+||||++.|..+.. .+.|.-|++............ . .....+.+..-.++.. +.+-+
T Consensus 152 g~~~~l~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~-~--~~~~~~~G~PDG~~vDadG~lw~ 228 (307)
T COG3386 152 GGVVRLLDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRG-F--VDFDEEPGLPDGMAVDADGNLWV 228 (307)
T ss_pred CCEEEeecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcce-E--EEccCCCCCCCceEEeCCCCEEE
Confidence 3444555555666788999999987766544 477777777631110000000 0 1222233444445554 44444
Q ss_pred EEeCCC-cEEEEcCCCceEEEEecccCccEEEEEE-cCCCCEEEEEE
Q 000602 323 TAGEDC-TCRVWGSDGKQLKMIKEHIGRGIWRCLY-DSLSSLLVTAG 367 (1398)
Q Consensus 323 sgs~Dg-~i~vWd~~g~~l~~l~~h~~~~V~sl~~-spdg~~latgg 367 (1398)
++..+| .|.+|+.+|+.+..+..... .+++++| .|+.+.|...+
T Consensus 229 ~a~~~g~~v~~~~pdG~l~~~i~lP~~-~~t~~~FgG~~~~~L~iTs 274 (307)
T COG3386 229 AAVWGGGRVVRFNPDGKLLGEIKLPVK-RPTNPAFGGPDLNTLYITS 274 (307)
T ss_pred ecccCCceEEEECCCCcEEEEEECCCC-CCccceEeCCCcCEEEEEe
Confidence 444444 89999999999999888755 4888888 45555444433
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=93.24 E-value=0.18 Score=40.44 Aligned_cols=32 Identities=16% Similarity=0.391 Sum_probs=29.1
Q ss_pred cCCcEEEEEeecCCCEEEEecCCCeEEEEECC
Q 000602 579 FGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1398)
Q Consensus 579 h~~~Itsla~Spdg~lLatGs~dGtI~Iwd~~ 610 (1398)
...+|.+++|+|...+||.|+.+|.|.+|.++
T Consensus 10 l~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 10 LPSRVSCMSWCPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CCCcEEEEEECCCCCEEEEEECCCeEEEEECC
Confidence 35569999999999999999999999999984
|
|
| >PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea | Back alignment and domain information |
|---|
Probab=92.90 E-value=26 Score=41.94 Aligned_cols=231 Identities=13% Similarity=0.151 Sum_probs=92.9
Q ss_pred CeEEEEEEeee-CccEEEEEEeccccccCC--CCccceeEEEEEc--CCeEEEEEecCCCCCCCCCCCcccccceeeeec
Q 000602 54 GTLIRPFQVFH-GIRLHGISCNFINCTEGS--VSTRVTFEVALFG--EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL 128 (1398)
Q Consensus 54 g~~l~~~~~~~-~~~V~~i~fs~~~~~~~p--dg~~~~~~la~~g--d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l 128 (1398)
++.++.+.... +...|..-|+. |+.++ +.....++|++-+ .++|.|+|+.+... ..++.+.+
T Consensus 52 gqVIhrl~mp~~GDElHH~GWNa--CSsc~~~~~~~~Rr~Li~PgL~SsrIyviD~~~dPr-----------~P~l~KvI 118 (461)
T PF05694_consen 52 GQVIHRLPMPNRGDELHHSGWNA--CSSCHYGDPSKERRYLILPGLRSSRIYVIDTKTDPR-----------KPRLHKVI 118 (461)
T ss_dssp TSEEEEEE-SSS---B---EES----GGSTT--TT--S-EEEEEBTTT--EEEEE--S-TT-----------S-EEEEEE
T ss_pred ccEEEEEeCCCCCCccccccCcc--cccccCCCCcccCCcEEeeeeccCcEEEEECCCCCC-----------CCceEeee
Confidence 47777776533 35678777762 33334 1111126677766 78899999985331 12333333
Q ss_pred cc---CC----CcEEEEEEEeecCCCcEEEEEE--C----CCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcE
Q 000602 129 PR---LS----HWVFDVCFLKVCNGNRSLAIGC--S----DNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALR 195 (1398)
Q Consensus 129 ~~---h~----~~V~~v~fsp~~~dg~~Latgs--~----Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~ 195 (1398)
.. +. ..-..+...| +|..++++- . -|-+.+.|-++-+.............+...||.. |..+.
T Consensus 119 e~~ev~~k~g~s~PHT~Hclp---~G~imIS~lGd~~G~g~Ggf~llD~~tf~v~g~We~~~~~~~~gYDfw~q-pr~nv 194 (461)
T PF05694_consen 119 EPEEVFEKTGLSRPHTVHCLP---DGRIMISALGDADGNGPGGFVLLDGETFEVKGRWEKDRGPQPFGYDFWYQ-PRHNV 194 (461)
T ss_dssp -HHHHHHHH-EEEEEEEEE-S---S--EEEEEEEETTS-S--EEEEE-TTT--EEEE--SB-TT------EEEE-TTTTE
T ss_pred CHHHHHhhcCCCCCceeeecC---CccEEEEeccCCCCCCCCcEEEEcCccccccceeccCCCCCCCCCCeEEc-CCCCE
Confidence 32 11 2334555567 888777752 2 3457888888777777766554444455455443 45556
Q ss_pred EEEEEC--------------------CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCc
Q 000602 196 IASGTI--------------------YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGH 255 (1398)
Q Consensus 196 lasgs~--------------------dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH 255 (1398)
++|... -..+.+||+. +.+.++++.--
T Consensus 195 MiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~---------------------------------~r~~~Q~idLg 241 (461)
T PF05694_consen 195 MISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWS---------------------------------TRKLLQTIDLG 241 (461)
T ss_dssp EEE-B---HHHHTT---TTTHHHH-S--EEEEEETT---------------------------------TTEEEEEEES-
T ss_pred EEEeccCChhhcccCCChhHhhcccccCeEEEEECC---------------------------------CCcEeeEEecC
Confidence 665431 2345555554 56667766533
Q ss_pred c--CCEEEEEEcCC--CCE-EEEEECCCeEEEEEc-CCCcccCCCCceEeeeeEEecC------------CccEEEEEEc
Q 000602 256 E--GSIFRIEWSSC--GSK-LVSVSDDRSARIWEV-RAEYWKDSDSIEEVGSSVLYGH------------NARVWDCCLT 317 (1398)
Q Consensus 256 ~--~~I~~vafspd--g~~-LaS~s~Dg~V~iWd~-~~~~~~~~~~~~~i~~~~~~gh------------~~~V~~l~~s 317 (1398)
+ .....|.|..+ ..+ ++.+.-..+|..|-- ..++-. ...+-.+......+- ..-|+++..+
T Consensus 242 ~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~-a~kVi~ip~~~v~~~~lp~ml~~~~~~P~LitDI~iS 320 (461)
T PF05694_consen 242 EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWA-AEKVIDIPAKKVEGWILPEMLKPFGAVPPLITDILIS 320 (461)
T ss_dssp TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEE-EEEEEEE--EE--SS---GGGGGG-EE------EEE-
T ss_pred CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCee-eeEEEECCCcccCcccccccccccccCCCceEeEEEc
Confidence 2 24667777654 333 444444445554433 333221 000111110010000 2346787777
Q ss_pred --CCEE-EEEeCCCcEEEEcC
Q 000602 318 --DSFI-ITAGEDCTCRVWGS 335 (1398)
Q Consensus 318 --~~~l-~sgs~Dg~i~vWd~ 335 (1398)
+++| +++-.+|.+|.||+
T Consensus 321 lDDrfLYvs~W~~GdvrqYDI 341 (461)
T PF05694_consen 321 LDDRFLYVSNWLHGDVRQYDI 341 (461)
T ss_dssp TTS-EEEEEETTTTEEEEEE-
T ss_pred cCCCEEEEEcccCCcEEEEec
Confidence 5655 45567899999999
|
The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A. |
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.80 E-value=28 Score=42.03 Aligned_cols=259 Identities=11% Similarity=0.061 Sum_probs=147.7
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-EcCCeEEEEEecCCCCCCCCCCCcccccc
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNL 122 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~gd~~V~vwdl~~~~~~~~~~~~~~~~~~ 122 (1398)
..+.+++..+.+....+..+. ...++... |++. ...++ .+...+...+... .
T Consensus 11 ~~~~v~~~~~~~~~~~~~~~~--~~~~v~~~-------~~g~---~~~v~~~~~~~~~~~~~~~---------------n 63 (381)
T COG3391 11 ADVSVINTGTNKVTAAISLGR--GPGGVAVN-------PDGT---QVYVANSGSNDVSVIDATS---------------N 63 (381)
T ss_pred CceEEEeecccEEEEEeecCC--CCceeEEc-------CccC---EEEEEeecCceeeeccccc---------------c
Confidence 447888877777766666433 46777777 7762 33333 2233344333331 1
Q ss_pred eeeeecccCCCcEEEEEEEeecCCCcE-EEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEEC
Q 000602 123 SLVQSLPRLSHWVFDVCFLKVCNGNRS-LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 123 ~~~~~l~~h~~~V~~v~fsp~~~dg~~-Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~ 201 (1398)
........-...-..+++++ .+.. .++...++.|.+.|..+........... ....+.+ ++++..++.+..
T Consensus 64 ~~~~~~~~g~~~p~~i~v~~---~~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~---~~~~~~vYV~n~ 135 (381)
T COG3391 64 TVTQSLSVGGVYPAGVAVNP---AGNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAV---DPDGKYVYVANA 135 (381)
T ss_pred eeeeeccCCCccccceeeCC---CCCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEE---CCCCCEEEEEec
Confidence 11111111113345677887 7764 4455557899999987777766655333 2233444 667766666554
Q ss_pred ---CCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE-CC
Q 000602 202 ---YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DD 277 (1398)
Q Consensus 202 ---dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s-~D 277 (1398)
++.+.+.|.. +.+.+.....-..+ ..++++|+|+.+..+. .+
T Consensus 136 ~~~~~~vsvid~~---------------------------------t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~ 181 (381)
T COG3391 136 GNGNNTVSVIDAA---------------------------------TNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDD 181 (381)
T ss_pred ccCCceEEEEeCC---------------------------------CCeEEEEEecCCCc-ceEEECCCCCeEEEEecCC
Confidence 5777777766 44444444333334 8999999999765554 78
Q ss_pred CeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCC---CcEEEEcC-CCceEEE-EecccCcc
Q 000602 278 RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGED---CTCRVWGS-DGKQLKM-IKEHIGRG 350 (1398)
Q Consensus 278 g~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~D---g~i~vWd~-~g~~l~~-l~~h~~~~ 350 (1398)
+.|.+.|....... +... ....+-....+.+.+. +.+++..... +.+.+.|. ++..... +..... .
T Consensus 182 ~~v~vi~~~~~~v~-----~~~~-~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~~~~~~-~ 254 (381)
T COG3391 182 NTVSVIDTSGNSVV-----RGSV-GSLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDLPVGSG-A 254 (381)
T ss_pred CeEEEEeCCCccee-----cccc-ccccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEeccccccC-C
Confidence 89999997665431 0000 0011122233455554 4544444333 58888888 4444433 222222 2
Q ss_pred EEEEEEcCCCCEEEEEEc-CCcEEEEEcC
Q 000602 351 IWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1398)
Q Consensus 351 V~sl~~spdg~~latgg~-Dg~I~iwdl~ 378 (1398)
-..+.++|+|+++..... .+.+.+.|..
T Consensus 255 ~~~v~~~p~g~~~yv~~~~~~~V~vid~~ 283 (381)
T COG3391 255 PRGVAVDPAGKAAYVANSQGGTVSVIDGA 283 (381)
T ss_pred CCceeECCCCCEEEEEecCCCeEEEEeCC
Confidence 456889999998877744 4788888874
|
|
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.63 E-value=0.59 Score=56.73 Aligned_cols=67 Identities=18% Similarity=0.205 Sum_probs=56.3
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEE-EEEEcCCC
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIF-RIEWSSCG 268 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~-~vafspdg 268 (1398)
+|.-.++|.++.+|.|.+..+. .+.+.++.-|...++ +++|.|||
T Consensus 29 nP~~dLiA~~t~~gelli~R~n----------------------------------~qRlwtip~p~~~v~~sL~W~~DG 74 (665)
T KOG4640|consen 29 NPKMDLIATRTEKGELLIHRLN----------------------------------WQRLWTIPIPGENVTASLCWRPDG 74 (665)
T ss_pred cCccchhheeccCCcEEEEEec----------------------------------cceeEeccCCCCccceeeeecCCC
Confidence 6778899999999999998876 334555555666666 99999999
Q ss_pred CEEEEEECCCeEEEEEcCCCcc
Q 000602 269 SKLVSVSDDRSARIWEVRAEYW 290 (1398)
Q Consensus 269 ~~LaS~s~Dg~V~iWd~~~~~~ 290 (1398)
+.||.|-.||+|++-|+.++..
T Consensus 75 kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 75 KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred CEEEEEecCCeEEEEEccCCCc
Confidence 9999999999999999998755
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.26 E-value=4.8 Score=50.29 Aligned_cols=50 Identities=16% Similarity=0.288 Sum_probs=40.9
Q ss_pred CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecC
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNF 106 (1398)
Q Consensus 44 g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~ 106 (1398)
..|+||+. +|+++.++.-.++ ++.++-|+ .+- .+|++..+|++.+|++-.
T Consensus 64 ~~I~If~~-sG~lL~~~~w~~~-~lI~mgWs-------~~e----eLI~v~k~g~v~Vy~~~g 113 (829)
T KOG2280|consen 64 PYIRIFNI-SGQLLGRILWKHG-ELIGMGWS-------DDE----ELICVQKDGTVHVYGLLG 113 (829)
T ss_pred eeEEEEec-cccchHHHHhcCC-Ceeeeccc-------CCc----eEEEEeccceEEEeecch
Confidence 67999995 6788887776666 79999999 553 788888999999999974
|
|
| >COG3386 Gluconolactonase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=92.25 E-value=14 Score=42.97 Aligned_cols=127 Identities=15% Similarity=0.076 Sum_probs=67.1
Q ss_pred CcEEEEeCCcCe-----eccceEEEEEEecCCCCCCCCEEEEEeCCcEEEEECCCCeEEEEEE----eeeCccEEEEEEe
Q 000602 4 KDLSEWRLDVGQ-----YLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQ----VFHGIRLHGISCN 74 (1398)
Q Consensus 4 ~tv~iWdl~~~~-----h~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iwd~~tg~~l~~~~----~~~~~~V~~i~fs 74 (1398)
+.|.-|+..+++ +.+.+.++..- .. +..|+++. ..+.+++.+++..+..+. ....++-..+.+.
T Consensus 47 ~~i~r~~~~~g~~~~~~~p~~~~~~~~~--d~----~g~Lv~~~-~g~~~~~~~~~~~~t~~~~~~~~~~~~r~ND~~v~ 119 (307)
T COG3386 47 GRIHRLDPETGKKRVFPSPGGFSSGALI--DA----GGRLIACE-HGVRLLDPDTGGKITLLAEPEDGLPLNRPNDGVVD 119 (307)
T ss_pred CeEEEecCCcCceEEEECCCCcccceee--cC----CCeEEEEc-cccEEEeccCCceeEEeccccCCCCcCCCCceeEc
Confidence 456777777664 23345554444 22 34444443 346777776665532222 1122345555666
Q ss_pred ccccccCCCCccceeEEEEEcC----------CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 75 FINCTEGSVSTRVTFEVALFGE----------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 75 ~~~~~~~pdg~~~~~~la~~gd----------~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
|+| .+.+..-. ..-.||.++.. ...++.+..+-.--+.++|||
T Consensus 120 -------pdG----~~wfgt~~~~~~~~~~~~~~G~lyr~~p~--------------g~~~~l~~~~~~~~NGla~Sp-- 172 (307)
T COG3386 120 -------PDG----RIWFGDMGYFDLGKSEERPTGSLYRVDPD--------------GGVVRLLDDDLTIPNGLAFSP-- 172 (307)
T ss_pred -------CCC----CEEEeCCCccccCccccCCcceEEEEcCC--------------CCEEEeecCcEEecCceEECC--
Confidence 776 23332211 11245544421 223333444444557899999
Q ss_pred CCCcEEEEEEC-CCeEEEEEcC
Q 000602 145 NGNRSLAIGCS-DNSIRVWDIS 165 (1398)
Q Consensus 145 ~dg~~Latgs~-Dg~V~vWd~~ 165 (1398)
|++.|..+.. .+.|.-|++.
T Consensus 173 -Dg~tly~aDT~~~~i~r~~~d 193 (307)
T COG3386 173 -DGKTLYVADTPANRIHRYDLD 193 (307)
T ss_pred -CCCEEEEEeCCCCeEEEEecC
Confidence 9988877754 4778888775
|
|
| >COG3391 Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.12 E-value=23 Score=42.82 Aligned_cols=193 Identities=12% Similarity=0.123 Sum_probs=118.3
Q ss_pred EEEEEecCCCCCCCCEEEE-E-eCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE-E--cC
Q 000602 22 ALCFVHLPSHLSSLPFLLA-G-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL-F--GE 96 (1398)
Q Consensus 22 alafs~~pd~~~~g~lLaa-g-~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~-~--gd 96 (1398)
.++++ ++ +..+.+ . .++.|.+.|..+.+.++...... .-++++++ |+++ .+.++ . ++
T Consensus 78 ~i~v~--~~----~~~vyv~~~~~~~v~vid~~~~~~~~~~~vG~--~P~~~~~~-------~~~~---~vYV~n~~~~~ 139 (381)
T COG3391 78 GVAVN--PA----GNKVYVTTGDSNTVSVIDTATNTVLGSIPVGL--GPVGLAVD-------PDGK---YVYVANAGNGN 139 (381)
T ss_pred ceeeC--CC----CCeEEEecCCCCeEEEEcCcccceeeEeeecc--CCceEEEC-------CCCC---EEEEEecccCC
Confidence 55666 65 443333 3 36899999988888877776543 47889999 8873 33333 3 24
Q ss_pred CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE-CCCeEEEEEcCCCeEEE-E--
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC-SDNSIRVWDISNSSIIL-E-- 172 (1398)
Q Consensus 97 ~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs-~Dg~V~vWd~~~~~~~~-~-- 172 (1398)
+++.+.|-.+ .+.......-..+ ..+++.| +|..+++.. .+++|.+.|........ .
T Consensus 140 ~~vsvid~~t---------------~~~~~~~~vG~~P-~~~a~~p---~g~~vyv~~~~~~~v~vi~~~~~~v~~~~~~ 200 (381)
T COG3391 140 NTVSVIDAAT---------------NKVTATIPVGNTP-TGVAVDP---DGNKVYVTNSDDNTVSVIDTSGNSVVRGSVG 200 (381)
T ss_pred ceEEEEeCCC---------------CeEEEEEecCCCc-ceEEECC---CCCeEEEEecCCCeEEEEeCCCcceeccccc
Confidence 6777777664 3333333322234 8999999 998666654 78999999977665553 1
Q ss_pred --EccCCcceEEEEEeecCCCCCcEEEEEECC---CeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeeccccccee
Q 000602 173 --VHSPERCLLYSMKLWGDNLEALRIASGTIY---NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1398)
Q Consensus 173 --l~~~~~~~~~s~~~~~~s~d~~~lasgs~d---g~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1398)
+..... -+.+.+ ++++..++..... +.+...|.. ...
T Consensus 201 ~~~~~~~~--P~~i~v---~~~g~~~yV~~~~~~~~~v~~id~~---------------------------------~~~ 242 (381)
T COG3391 201 SLVGVGTG--PAGIAV---DPDGNRVYVANDGSGSNNVLKIDTA---------------------------------TGN 242 (381)
T ss_pred cccccCCC--CceEEE---CCCCCEEEEEeccCCCceEEEEeCC---------------------------------Cce
Confidence 111111 112222 6777766554433 477777776 222
Q ss_pred EEEE-E-eCccCCEEEEEEcCCCCEEEEEE-CCCeEEEEEcCCCcc
Q 000602 248 NLFR-L-VGHEGSIFRIEWSSCGSKLVSVS-DDRSARIWEVRAEYW 290 (1398)
Q Consensus 248 ~~~~-l-~gH~~~I~~vafspdg~~LaS~s-~Dg~V~iWd~~~~~~ 290 (1398)
.... . .+-. ....+.++|+|+.+.... ..+.+.+-|..+...
T Consensus 243 v~~~~~~~~~~-~~~~v~~~p~g~~~yv~~~~~~~V~vid~~~~~v 287 (381)
T COG3391 243 VTATDLPVGSG-APRGVAVDPAGKAAYVANSQGGTVSVIDGATDRV 287 (381)
T ss_pred EEEeccccccC-CCCceeECCCCCEEEEEecCCCeEEEEeCCCCce
Confidence 2222 1 1112 456789999999887764 447888888777544
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.98 E-value=18 Score=40.37 Aligned_cols=101 Identities=12% Similarity=0.160 Sum_probs=65.2
Q ss_pred EEEEEEecCCCCCCCCEEEEEe--CCcEEEEECCCCeEEEEEEeeeCcc--EEEEEEeccccccCCCCccceeEEEEEcC
Q 000602 21 SALCFVHLPSHLSSLPFLLAGS--GSQVLLYDLEAGTLIRPFQVFHGIR--LHGISCNFINCTEGSVSTRVTFEVALFGE 96 (1398)
Q Consensus 21 talafs~~pd~~~~g~lLaag~--dg~I~Iwd~~tg~~l~~~~~~~~~~--V~~i~fs~~~~~~~pdg~~~~~~la~~gd 96 (1398)
..++|+ |. ..+-++-+- +-...++|..+.+.+.++...++.. =|+ .|| |||. .+.++=+|
T Consensus 71 Hgi~~~--p~---~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHG-vfs-------~dG~---~LYATEnd 134 (366)
T COG3490 71 HGIAFH--PA---LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHG-VFS-------PDGR---LLYATEND 134 (366)
T ss_pred CCeecC--CC---CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeeccc-ccC-------CCCc---EEEeecCC
Confidence 356777 65 233344333 5678899998887765554322211 123 388 9982 34444332
Q ss_pred -----CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEE
Q 000602 97 -----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGC 154 (1398)
Q Consensus 97 -----~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs 154 (1398)
|.|-|||... .+..+..+..|.-.-..+.+.+ ||+.|+.+.
T Consensus 135 fd~~rGViGvYd~r~--------------~fqrvgE~~t~GiGpHev~lm~---DGrtlvvan 180 (366)
T COG3490 135 FDPNRGVIGVYDARE--------------GFQRVGEFSTHGIGPHEVTLMA---DGRTLVVAN 180 (366)
T ss_pred CCCCCceEEEEeccc--------------ccceecccccCCcCcceeEEec---CCcEEEEeC
Confidence 7799999974 2566677778877778899999 999988763
|
|
| >PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=91.81 E-value=38 Score=41.31 Aligned_cols=84 Identities=11% Similarity=0.015 Sum_probs=48.4
Q ss_pred EEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc--CCEEEEEeCCCcEEEEcCC-Cce
Q 000602 263 EWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSD-GKQ 339 (1398)
Q Consensus 263 afspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s--~~~l~sgs~Dg~i~vWd~~-g~~ 339 (1398)
.++.+....+....++.+.+-+-.... . ....+++..++.+ +++++.-..+|.+.|...+ .+.
T Consensus 185 ~l~~~~~~~i~~~~g~~i~~i~~~~~~-------------~-i~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~ 250 (410)
T PF04841_consen 185 LLSSDRVVEILLANGETIYIIDENSFK-------------Q-IDSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEK 250 (410)
T ss_pred EeecCcceEEEEecCCEEEEEEccccc-------------c-ccCCCCeEEEEECCCCCEEEEEECCCCEEEEECcccce
Confidence 344555555555555666544322210 1 1123568888887 5788888999999998873 334
Q ss_pred EEEEecccCccEEEEEEcCCC
Q 000602 340 LKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 340 l~~l~~h~~~~V~sl~~spdg 360 (1398)
+..+..........+.|.-+.
T Consensus 251 ~~e~~~~~~~~p~~~~WCG~d 271 (410)
T PF04841_consen 251 LCEFDTDSKSPPKQMAWCGND 271 (410)
T ss_pred eEEeecCcCCCCcEEEEECCC
Confidence 444444422245677776543
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.77 E-value=0.41 Score=51.30 Aligned_cols=107 Identities=18% Similarity=0.104 Sum_probs=67.8
Q ss_pred CCcEEEEEECCCeEEEEEcCC-CeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcccCCccccCCCCCC
Q 000602 146 GNRSLAIGCSDNSIRVWDISN-SSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 146 dg~~Latgs~Dg~V~vWd~~~-~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~ 224 (1398)
-+..|++|+.+|.|.+|+... +.....+......+. ...+...++.+..++..+|.|+.|+..
T Consensus 69 ~~~~~~vG~~dg~v~~~n~n~~g~~~d~~~s~~e~i~---~~Ip~~~~~~~~c~~~~dg~ir~~n~~------------- 132 (238)
T KOG2444|consen 69 ASAKLMVGTSDGAVYVFNWNLEGAHSDRVCSGEESID---LGIPNGRDSSLGCVGAQDGRIRACNIK------------- 132 (238)
T ss_pred cCceEEeecccceEEEecCCccchHHHhhhcccccce---eccccccccceeEEeccCCceeeeccc-------------
Confidence 345788999999999998852 111111111111111 112234566789999999999999998
Q ss_pred CCCCCCCCCcceeeecccccceeEEEEEeCcc-CCEEEEEEcCCCCEEEEE--ECCCeEEEEEcCCC
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHE-GSIFRIEWSSCGSKLVSV--SDDRSARIWEVRAE 288 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~-~~I~~vafspdg~~LaS~--s~Dg~V~iWd~~~~ 288 (1398)
..+.+.....|+ .++..+..+..+++++++ |.|..++.|++..-
T Consensus 133 --------------------p~k~~g~~g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve~~ 179 (238)
T KOG2444|consen 133 --------------------PNKVLGYVGQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVEKI 179 (238)
T ss_pred --------------------cCceeeeeccccCCCcceeEEecCCceEEeeccccchhhhhcchhhh
Confidence 455565666676 555555555666667666 77777777777653
|
|
| >PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase | Back alignment and domain information |
|---|
Probab=91.71 E-value=28 Score=39.65 Aligned_cols=146 Identities=12% Similarity=-0.024 Sum_probs=84.3
Q ss_pred CCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEE
Q 000602 192 EALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1398)
Q Consensus 192 d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~L 271 (1398)
.+..|+.|+.+| |.+++... ........ +...|..+...|+-+.|
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~--------------------------------~~~~~~i~--~~~~I~ql~vl~~~~~l 50 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSD--------------------------------PSKPTRIL--KLSSITQLSVLPELNLL 50 (275)
T ss_pred CCCEEEEEECCC-EEEEEecC--------------------------------CccceeEe--ecceEEEEEEecccCEE
Confidence 467899999998 88888830 11111111 22339999999988887
Q ss_pred EEEECCCeEEEEEcCCCcccCCCCceEeee-----eEEecCCccEEEEE----EcCCEEEEEeCCCcEEEEcC-CC----
Q 000602 272 VSVSDDRSARIWEVRAEYWKDSDSIEEVGS-----SVLYGHNARVWDCC----LTDSFIITAGEDCTCRVWGS-DG---- 337 (1398)
Q Consensus 272 aS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~-----~~~~gh~~~V~~l~----~s~~~l~sgs~Dg~i~vWd~-~g---- 337 (1398)
+.-++ +.+.++++..-....... ....+ .........+...+ ..+...+......++.+|.. ..
T Consensus 51 lvLsd-~~l~~~~L~~l~~~~~~~-~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va~kk~i~i~~~~~~~~~f 128 (275)
T PF00780_consen 51 LVLSD-GQLYVYDLDSLEPVSTSA-PLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVAVKKKILIYEWNDPRNSF 128 (275)
T ss_pred EEEcC-CccEEEEchhhccccccc-cccccccccccccccccCCeeEEeeccccccceEEEEEECCEEEEEEEECCcccc
Confidence 77654 999999998755421000 00000 00112223344444 11333333444558998887 31
Q ss_pred -ceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCC
Q 000602 338 -KQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 338 -~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~ 379 (1398)
+..+.+.... .+.+++|. ++.|+.|..+ ...+.|+..
T Consensus 129 ~~~~ke~~lp~--~~~~i~~~--~~~i~v~~~~-~f~~idl~~ 166 (275)
T PF00780_consen 129 SKLLKEISLPD--PPSSIAFL--GNKICVGTSK-GFYLIDLNT 166 (275)
T ss_pred cceeEEEEcCC--CcEEEEEe--CCEEEEEeCC-ceEEEecCC
Confidence 3455555543 48899998 4556666544 578888863
|
These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity |
| >PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families | Back alignment and domain information |
|---|
Probab=91.67 E-value=39 Score=41.21 Aligned_cols=148 Identities=18% Similarity=0.138 Sum_probs=80.9
Q ss_pred EEEEeCCcCeecc---ceEEEEEEecCCCCCCCCEEEEEe--C----CcEEEEECCCCeEEEEEEeeeCccEEEEEEecc
Q 000602 6 LSEWRLDVGQYLG---EISALCFVHLPSHLSSLPFLLAGS--G----SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFI 76 (1398)
Q Consensus 6 v~iWdl~~~~h~~---~Vtalafs~~pd~~~~g~lLaag~--d----g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~ 76 (1398)
-.+.|+......+ .+...++| || +++||.+. + .+|+|+|+++|+.+...- ....-..+.|.
T Consensus 109 evllD~n~l~~~~~~~~~~~~~~S--pd----g~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i--~~~~~~~~~W~-- 178 (414)
T PF02897_consen 109 EVLLDPNELAKDGGYVSLGGFSVS--PD----GKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGI--ENPKFSSVSWS-- 178 (414)
T ss_dssp EEEEEGGGGSTTSS-EEEEEEEET--TT----SSEEEEEEEETTSSEEEEEEEETTTTEEEEEEE--EEEESEEEEEC--
T ss_pred EEEEcchHhhccCceEEeeeeeEC--CC----CCEEEEEecCCCCceEEEEEEECCCCcCcCCcc--cccccceEEEe--
Confidence 3566766544222 34467888 99 88888764 2 369999999998765321 11122338888
Q ss_pred ccccCCCCccceeEEEEEc-C----------CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecC
Q 000602 77 NCTEGSVSTRVTFEVALFG-E----------KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCN 145 (1398)
Q Consensus 77 ~~~~~pdg~~~~~~la~~g-d----------~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~ 145 (1398)
++++ .++.+.- + ..|..|++.+... .-.++........+...+..++
T Consensus 179 -----~d~~---~~~y~~~~~~~~~~~~~~~~~v~~~~~gt~~~-----------~d~lvfe~~~~~~~~~~~~~s~--- 236 (414)
T PF02897_consen 179 -----DDGK---GFFYTRFDEDQRTSDSGYPRQVYRHKLGTPQS-----------EDELVFEEPDEPFWFVSVSRSK--- 236 (414)
T ss_dssp -----TTSS---EEEEEECSTTTSS-CCGCCEEEEEEETTS-GG-----------G-EEEEC-TTCTTSEEEEEE-T---
T ss_pred -----CCCC---EEEEEEeCcccccccCCCCcEEEEEECCCChH-----------hCeeEEeecCCCcEEEEEEecC---
Confidence 8863 3444432 2 2366666654220 1123333333333467888888
Q ss_pred CCcEEEEEEC---C-CeEEEEEcCCC----eEEEEEccCCcceEEEEE
Q 000602 146 GNRSLAIGCS---D-NSIRVWDISNS----SIILEVHSPERCLLYSMK 185 (1398)
Q Consensus 146 dg~~Latgs~---D-g~V~vWd~~~~----~~~~~l~~~~~~~~~s~~ 185 (1398)
++++|+.... + ..+.+.++..+ .....+........+.+.
T Consensus 237 d~~~l~i~~~~~~~~s~v~~~d~~~~~~~~~~~~~l~~~~~~~~~~v~ 284 (414)
T PF02897_consen 237 DGRYLFISSSSGTSESEVYLLDLDDGGSPDAKPKLLSPREDGVEYYVD 284 (414)
T ss_dssp TSSEEEEEEESSSSEEEEEEEECCCTTTSS-SEEEEEESSSS-EEEEE
T ss_pred cccEEEEEEEccccCCeEEEEeccccCCCcCCcEEEeCCCCceEEEEE
Confidence 9998766433 2 45777788764 233444434444444443
|
Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A .... |
| >PRK13616 lipoprotein LpqB; Provisional | Back alignment and domain information |
|---|
Probab=91.54 E-value=11 Score=48.05 Aligned_cols=108 Identities=9% Similarity=0.088 Sum_probs=61.1
Q ss_pred ccCCEEEEEEcCCCCEEEEEECCCeEEE---EEcCCCcccCCCCceEeeeeEEe-cCCccEEEEEEc-CCEEEEEeCCCc
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARI---WEVRAEYWKDSDSIEEVGSSVLY-GHNARVWDCCLT-DSFIITAGEDCT 329 (1398)
Q Consensus 255 H~~~I~~vafspdg~~LaS~s~Dg~V~i---Wd~~~~~~~~~~~~~~i~~~~~~-gh~~~V~~l~~s-~~~l~sgs~Dg~ 329 (1398)
..+.|..+.|||||.+++-.. ++.|.+ -....+.. ....+..+. +-...+.++.|. +..|+.+..++.
T Consensus 446 ~~g~Issl~wSpDG~RiA~i~-~g~v~Va~Vvr~~~G~~------~l~~~~~l~~~l~~~~~~l~W~~~~~L~V~~~~~~ 518 (591)
T PRK13616 446 VPGPISELQLSRDGVRAAMII-GGKVYLAVVEQTEDGQY------ALTNPREVGPGLGDTAVSLDWRTGDSLVVGRSDPE 518 (591)
T ss_pred cCCCcCeEEECCCCCEEEEEE-CCEEEEEEEEeCCCCce------eecccEEeecccCCccccceEecCCEEEEEecCCC
Confidence 356799999999999887765 466766 33223321 111111222 233345778897 455667766666
Q ss_pred EEEEcC--CCceEEEEecc--cCccEEEEEEcCCCCEEEEEEcCCcE
Q 000602 330 CRVWGS--DGKQLKMIKEH--IGRGIWRCLYDSLSSLLVTAGFDSAI 372 (1398)
Q Consensus 330 i~vWd~--~g~~l~~l~~h--~~~~V~sl~~spdg~~latgg~Dg~I 372 (1398)
-.+|.+ +|.....+... .. ++.+++-+++ .|+....+|.+
T Consensus 519 ~~v~~v~vDG~~~~~~~~~n~~~-~v~~vaa~~~--~iyv~~~~g~~ 562 (591)
T PRK13616 519 HPVWYVNLDGSNSDALPSRNLSA-PVVAVAASPS--TVYVTDARAVL 562 (591)
T ss_pred CceEEEecCCccccccCCCCccC-ceEEEecCCc--eEEEEcCCceE
Confidence 666765 66554432331 33 5777777663 34444555533
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=91.14 E-value=38 Score=40.02 Aligned_cols=61 Identities=18% Similarity=0.173 Sum_probs=38.9
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCCccccccCccceeeeeeeeccccCCcEEEEEeecCCCEEEEecCCCeEE
Q 000602 534 GHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605 (1398)
Q Consensus 534 d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsla~Spdg~lLatGs~dGtI~ 605 (1398)
.+.++++.-..+.|....++... ...-...+......+++.+++.|||.++++-+.+|.|+
T Consensus 270 ~g~~~~~~~~~~~i~~~~~~~~~-----------~~~~~~~~~~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 270 RGDLFVADYGGGRIWRLDLDEDG-----------SVTEEEEFLGGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTEEEEEETTTTEEEEEEEETTE-----------EEEEEEEECTTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred cCcEEEecCCCCEEEEEeeecCC-----------CccceEEccccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 56667766656666666654321 11112222345566899999999999999999999875
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=90.72 E-value=1 Score=54.79 Aligned_cols=73 Identities=10% Similarity=0.054 Sum_probs=61.9
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
.-.|.-+.|+| .-+++|++..+|.|.+..+. .+.+.++.-|......+++| .+||+.||.|-.||+|++.|..
T Consensus 20 ~~~i~~~ewnP---~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W---~~DGkllaVg~kdG~I~L~Dve 92 (665)
T KOG4640|consen 20 PINIKRIEWNP---KMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCW---RPDGKLLAVGFKDGTIRLHDVE 92 (665)
T ss_pred ccceEEEEEcC---ccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeee---cCCCCEEEEEecCCeEEEEEcc
Confidence 35678899999 89999999999999999887 77777777555544557777 7899999999999999999998
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.47 E-value=13 Score=47.30 Aligned_cols=61 Identities=5% Similarity=0.026 Sum_probs=34.2
Q ss_pred CCCEEEEEECC------CeEEEEEcCC-CcccCCCCceEeeeeEEecCCccEEEEEEcCCEEEEEeCCC--cEEEEcC
Q 000602 267 CGSKLVSVSDD------RSARIWEVRA-EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC--TCRVWGS 335 (1398)
Q Consensus 267 dg~~LaS~s~D------g~V~iWd~~~-~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~~~l~sgs~Dg--~i~vWd~ 335 (1398)
+++..+.|+.+ ..+..||..+ .+- ..+. .+.........+.+.+...++||.|+ ++-.||.
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W------~~~~--~m~~~r~~~~~~~~~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGW------ELIT--TTESRLSALHTILHDNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCe------eEcc--ccCcccccceeEEECCEEEEEeeecceeehhhcCc
Confidence 45555666543 2466788876 332 2121 22222233444555578888999888 6666776
|
|
| >PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A | Back alignment and domain information |
|---|
Probab=90.29 E-value=9.5 Score=44.09 Aligned_cols=155 Identities=9% Similarity=0.010 Sum_probs=79.1
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeC-CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~d-g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
.+.+..+..+ +| |+|++++.. ....-||.....-. .+.-....+|..|.|+ |++ .+..+..
T Consensus 144 ~gs~~~~~r~--~d----G~~vavs~~G~~~~s~~~G~~~w~-~~~r~~~~riq~~gf~-------~~~----~lw~~~~ 205 (302)
T PF14870_consen 144 SGSINDITRS--SD----GRYVAVSSRGNFYSSWDPGQTTWQ-PHNRNSSRRIQSMGFS-------PDG----NLWMLAR 205 (302)
T ss_dssp ---EEEEEE---TT----S-EEEEETTSSEEEEE-TT-SS-E-EEE--SSS-EEEEEE--------TTS-----EEEEET
T ss_pred cceeEeEEEC--CC----CcEEEEECcccEEEEecCCCccce-EEccCccceehhceec-------CCC----CEEEEeC
Confidence 4668888888 88 899999994 55667886432221 1221234589999999 887 5767778
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEcc
Q 000602 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHS 175 (1398)
Q Consensus 96 d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~~ 175 (1398)
++.|++=+..... +. -.+....+..-.-.+.+++|.+ ++...|+|+ .|+ .+...+.|+.-.+...
T Consensus 206 Gg~~~~s~~~~~~---~~-------w~~~~~~~~~~~~~~ld~a~~~---~~~~wa~gg-~G~-l~~S~DgGktW~~~~~ 270 (302)
T PF14870_consen 206 GGQIQFSDDPDDG---ET-------WSEPIIPIKTNGYGILDLAYRP---PNEIWAVGG-SGT-LLVSTDGGKTWQKDRV 270 (302)
T ss_dssp TTEEEEEE-TTEE---EE-------E---B-TTSS--S-EEEEEESS---SS-EEEEES-TT--EEEESSTTSS-EE-GG
T ss_pred CcEEEEccCCCCc---cc-------cccccCCcccCceeeEEEEecC---CCCEEEEeC-Ccc-EEEeCCCCccceECcc
Confidence 8888888722110 00 0011112222223489999998 777777665 453 3446666766655543
Q ss_pred --CCcceEEEEEeecCCCCCcEEEEEECCCeEEEE
Q 000602 176 --PERCLLYSMKLWGDNLEALRIASGTIYNEIIVW 208 (1398)
Q Consensus 176 --~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vW 208 (1398)
+....+|.+.|... ..-.+-+.+|.|.-|
T Consensus 271 ~~~~~~n~~~i~f~~~----~~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 271 GENVPSNLYRIVFVNP----DKGFVLGQDGVLLRY 301 (302)
T ss_dssp GTTSSS---EEEEEET----TEEEEE-STTEEEEE
T ss_pred ccCCCCceEEEEEcCC----CceEEECCCcEEEEe
Confidence 44556888887422 344444567777655
|
|
| >KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=90.19 E-value=75 Score=41.85 Aligned_cols=114 Identities=15% Similarity=0.162 Sum_probs=63.5
Q ss_pred CEEEEEeCCcEEEEECC-CCeEEEEEEeee--CccEEEEEEeccccccCCCCccceeEEEEEc-CCeEEEEEecCCCCCC
Q 000602 36 PFLLAGSGSQVLLYDLE-AGTLIRPFQVFH--GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPN 111 (1398)
Q Consensus 36 ~lLaag~dg~I~Iwd~~-tg~~l~~~~~~~--~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~V~vwdl~~~~~~~ 111 (1398)
+++.+-++|.+..+... +|++ ..+..+. ...|.++++.+. |.|.+..++++.+. |++++++.+....
T Consensus 551 qiVvalSngelvyfe~d~sgql-~E~~er~tl~~~vac~ai~~~-----~~g~krsrfla~a~~d~~vriisL~p~d--- 621 (1205)
T KOG1898|consen 551 QIVVALSNGELVYFEGDVSGQL-NEFTERVTLSTDVACLAIGQD-----PEGEKRSRFLALASVDNMVRIISLDPSD--- 621 (1205)
T ss_pred EEEEEccCCeEEEEEeccCccc-eeeeeeeeeceeehhhccCCC-----CcchhhcceeeeeccccceeEEEecCcc---
Confidence 44444457777777654 3333 3332111 235888888744 44444446677766 8999999998422
Q ss_pred CCCCCcccccceeeeecccCCCcEEEEEEEeecCCC------cEEEEEECCCeEEEE--EcCCCe
Q 000602 112 SQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN------RSLAIGCSDNSIRVW--DISNSS 168 (1398)
Q Consensus 112 ~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg------~~Latgs~Dg~V~vW--d~~~~~ 168 (1398)
.-..-...+-..++.++.+-+...++ -+|.+|-..|.+.-. |..+|+
T Consensus 622 ----------~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~NGvllR~~id~v~G~ 676 (1205)
T KOG1898|consen 622 ----------CLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLRNGVLLRFVIDTVTGQ 676 (1205)
T ss_pred ----------eEEEccccccCCCccceEEEEecccCCccceeEEEEecccccEEEEEEecccccc
Confidence 11222334555667777766533233 256677777765544 333453
|
|
| >PHA02713 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=90.06 E-value=13 Score=47.47 Aligned_cols=61 Identities=5% Similarity=0.094 Sum_probs=33.2
Q ss_pred EEEcCCEEEEEeCC------CcEEEEcCC--CceE--EEEecccCccEEEEEEcCCCCEEEEEEcCC--cEEEEEc
Q 000602 314 CCLTDSFIITAGED------CTCRVWGSD--GKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDS--AIKVHQF 377 (1398)
Q Consensus 314 l~~s~~~l~sgs~D------g~i~vWd~~--g~~l--~~l~~h~~~~V~sl~~spdg~~latgg~Dg--~I~iwdl 377 (1398)
+.+.+...+.||.+ ..+..||.. .+-. ..+..... ....+++ +++..++||.|| .+-.||+
T Consensus 460 ~~~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~-~~~~~~~--~~~iyv~Gg~~~~~~~e~yd~ 532 (557)
T PHA02713 460 VSHKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLS-ALHTILH--DNTIMMLHCYESYMLQDTFNV 532 (557)
T ss_pred EEECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccc-cceeEEE--CCEEEEEeeecceeehhhcCc
Confidence 34446666667654 235678883 3322 22322222 1222333 678889999988 5555555
|
|
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=90.01 E-value=5.2 Score=51.81 Aligned_cols=121 Identities=23% Similarity=0.277 Sum_probs=75.4
Q ss_pred CEEEEEeCCcEEEEECCCCeEEE-------------------EEE--eeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 36 PFLLAGSGSQVLLYDLEAGTLIR-------------------PFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 36 ~lLaag~dg~I~Iwd~~tg~~l~-------------------~~~--~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
+-|+++.|+.+.+||-.....+. ++. ..-...|+.|.++ |+| .++|.+
T Consensus 34 rNLl~~~d~~L~vWd~~e~~l~~~nlr~~~~~~~~~~~~~~q~L~~~~~~~f~v~~i~~n-------~~g----~~lal~ 102 (717)
T PF10168_consen 34 RNLLACRDGDLFVWDSSECCLLTVNLRSLESDAEGPAKSSYQKLLPSNPPLFEVHQISLN-------PTG----SLLALV 102 (717)
T ss_pred eeeEEEeCCEEEEEECCCCEEEEEeeccccccccCccccCcceeecCCCCceeEEEEEEC-------CCC----CEEEEE
Confidence 56677778889999865432211 110 0112357778888 888 799999
Q ss_pred cCCeEEEEEecCCCCCCCCCCC-cccccceeee-----ecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCC
Q 000602 95 GEKRVKLFELNFELSPNSQYQP-ETCVNLSLVQ-----SLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1398)
Q Consensus 95 gd~~V~vwdl~~~~~~~~~~~~-~~~~~~~~~~-----~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~ 167 (1398)
|...|.|..+...-.+...|.. ...+..+... ....+...|..+.|+|.+.++..|++-..|+++|+||+...
T Consensus 103 G~~~v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~l~vLtsdn~lR~y~~~~~ 181 (717)
T PF10168_consen 103 GPRGVVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSHLVVLTSDNTLRLYDISDP 181 (717)
T ss_pred cCCcEEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCeEEEEecCCEEEEEecCCC
Confidence 9999999988642111111211 0111111110 01234568999999996666788989999999999999654
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.88 E-value=5.8 Score=51.49 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=67.2
Q ss_pred CCEEEEEeC-CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEcCCeEEEEEecCCCCCCCC
Q 000602 35 LPFLLAGSG-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 35 g~lLaag~d-g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~~ 113 (1398)
+.++++|++ |.+-..|+...-.-.....+...+|.+++|+ .+|+ .+++..++|.|.+||+..
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~nL~~~~~ne~v~~~Vtsvafn-------~dg~---~l~~G~~~G~V~v~D~~~------- 161 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGNLGPLHQNERVQGPVTSVAFN-------QDGS---LLLAGLGDGHVTVWDMHR------- 161 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcccchhhcCCccCCcceeeEec-------CCCc---eeccccCCCcEEEEEccC-------
Confidence 357788884 8888888754311001111234589999999 8883 566667799999999986
Q ss_pred CCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcC
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDIS 165 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~ 165 (1398)
.+..+.+..|..+...+-+.-...++..+.++..-|. +|.+.
T Consensus 162 --------~k~l~~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 162 --------AKILKVITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred --------CcceeeeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEEE
Confidence 4455666666666666555432225556777766665 67653
|
|
| >PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain | Back alignment and domain information |
|---|
Probab=89.01 E-value=0.95 Score=36.36 Aligned_cols=33 Identities=18% Similarity=0.251 Sum_probs=29.4
Q ss_pred CCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCe
Q 000602 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~ 168 (1398)
...|.+++|+| ..++||.|..+|.|.++.+ +++
T Consensus 11 ~~~v~~~~w~P---~mdLiA~~t~~g~v~v~Rl-~~q 43 (47)
T PF12894_consen 11 PSRVSCMSWCP---TMDLIALGTEDGEVLVYRL-NWQ 43 (47)
T ss_pred CCcEEEEEECC---CCCEEEEEECCCeEEEEEC-CCc
Confidence 45699999999 9999999999999999998 544
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=88.82 E-value=16 Score=46.57 Aligned_cols=143 Identities=12% Similarity=0.028 Sum_probs=74.2
Q ss_pred CCEEEEEe-C------CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc-C------CeEE
Q 000602 35 LPFLLAGS-G------SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E------KRVK 100 (1398)
Q Consensus 35 g~lLaag~-d------g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d------~~V~ 100 (1398)
+.+++.|+ . ..+..||..+++-.....-.....-+++++. .+ .+.+++| + .++.
T Consensus 285 ~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~-------~~-----~lYv~GG~~~~~~~l~~ve 352 (571)
T KOG4441|consen 285 GKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMPSPRCRVGVAVL-------NG-----KLYVVGGYDSGSDRLSSVE 352 (571)
T ss_pred CeEEEECCCCCCCcccceeEEecCCcCcEeecCCCCcccccccEEEE-------CC-----EEEEEccccCCCcccceEE
Confidence 45666665 3 4688999988754332222223245566665 33 5666666 4 3466
Q ss_pred EEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEECCCe-----EEEEEcCCCeEEEEEcc
Q 000602 101 LFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----IRVWDISNSSIILEVHS 175 (1398)
Q Consensus 101 vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~-----V~vWd~~~~~~~~~l~~ 175 (1398)
.||..... +..+..+.......- ++.. +|.+.|+||.||. |..||..+.+.-....-
T Consensus 353 ~YD~~~~~-------------W~~~a~M~~~R~~~~-v~~l----~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va~m 414 (571)
T KOG4441|consen 353 RYDPRTNQ-------------WTPVAPMNTKRSDFG-VAVL----DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVAPM 414 (571)
T ss_pred EecCCCCc-------------eeccCCccCccccce-eEEE----CCEEEEEeccccccccccEEEecCCCCcccccCCC
Confidence 66665432 333333332222222 2222 7788899998864 77788776543221111
Q ss_pred CCcceEEEEEeecCCCCCcEEEEEECCC------eEEEEEcc
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYN------EIIVWKVD 211 (1398)
Q Consensus 176 ~~~~~~~s~~~~~~s~d~~~lasgs~dg------~I~vWd~~ 211 (1398)
.....-..++ .-++.+.+.|+.++ .+..+|+.
T Consensus 415 ~~~r~~~gv~----~~~g~iYi~GG~~~~~~~l~sve~YDP~ 452 (571)
T KOG4441|consen 415 LTRRSGHGVA----VLGGKLYIIGGGDGSSNCLNSVECYDPE 452 (571)
T ss_pred CcceeeeEEE----EECCEEEEEcCcCCCccccceEEEEcCC
Confidence 1111111222 12566777777553 45566665
|
|
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=88.75 E-value=8.1 Score=47.19 Aligned_cols=163 Identities=11% Similarity=0.130 Sum_probs=90.6
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEe---CCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEE
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGS---GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~---dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
..||..++|. .. .+.+++.- +|.+++=| ...+.+|+ .|+|+.|.|......| .+||+
T Consensus 19 iHPvhGlaWT--DG----kqVvLT~L~l~~gE~kfGd---s~viGqFE-----hV~GlsW~P~~~~~~p------aLLAV 78 (671)
T PF15390_consen 19 IHPVHGLAWT--DG----KQVVLTDLQLHNGEPKFGD---SKVIGQFE-----HVHGLSWAPPCTADTP------ALLAV 78 (671)
T ss_pred hccccceEec--CC----CEEEEEeeeeeCCccccCC---ccEeeccc-----eeeeeeecCcccCCCC------ceEEE
Confidence 3578888887 32 44555432 35554433 24455554 4999999966544444 69999
Q ss_pred EcCCeEEEEEecCCCCCCCCCCCcccccceeeeeccc-CCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEE
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPR-LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172 (1398)
Q Consensus 94 ~gd~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~-h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~ 172 (1398)
-..+.|.||.+........+ .-......+.. ..---..+.|+| ....|++-.....-.++++.......+
T Consensus 79 QHkkhVtVWqL~~s~~e~~K------~l~sQtcEi~e~~pvLpQGCVWHP---k~~iL~VLT~~dvSV~~sV~~d~srVk 149 (671)
T PF15390_consen 79 QHKKHVTVWQLCPSTTERNK------LLMSQTCEIREPFPVLPQGCVWHP---KKAILTVLTARDVSVLPSVHCDSSRVK 149 (671)
T ss_pred eccceEEEEEeccCcccccc------ceeeeeeeccCCcccCCCcccccC---CCceEEEEecCceeEeeeeeeCCceEE
Confidence 99999999999743211111 00111111110 001124577899 888777665555445566643322222
Q ss_pred EccCCcceEEEEEeecCCCCCcEEEEE-ECCCeEEEEEcc
Q 000602 173 VHSPERCLLYSMKLWGDNLEALRIASG-TIYNEIIVWKVD 211 (1398)
Q Consensus 173 l~~~~~~~~~s~~~~~~s~d~~~lasg-s~dg~I~vWd~~ 211 (1398)
..-.....+.+.+| ..||.+|+.+ +..=.-++||-.
T Consensus 150 aDi~~~G~IhCACW---T~DG~RLVVAvGSsLHSyiWd~~ 186 (671)
T PF15390_consen 150 ADIKTSGLIHCACW---TKDGQRLVVAVGSSLHSYIWDSA 186 (671)
T ss_pred EeccCCceEEEEEe---cCcCCEEEEEeCCeEEEEEecCc
Confidence 22233456777777 5677776654 333345677754
|
|
| >KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.09 E-value=4.7 Score=48.34 Aligned_cols=123 Identities=15% Similarity=0.090 Sum_probs=77.2
Q ss_pred ceeeeecccCCCcEEEEEEEeecCCCc--E-----EEEEECCCeEEEEEcCC-Ce-EEEEEccCC--cce-EEEEEeecC
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNR--S-----LAIGCSDNSIRVWDISN-SS-IILEVHSPE--RCL-LYSMKLWGD 189 (1398)
Q Consensus 122 ~~~~~~l~~h~~~V~~v~fsp~~~dg~--~-----Latgs~Dg~V~vWd~~~-~~-~~~~l~~~~--~~~-~~s~~~~~~ 189 (1398)
++.+...+-|.+ |+-+.+.| +.+ . =+.|-.|+.|.-||.+- +. .+.-.+++. +.. ..|.+
T Consensus 366 GKIVeEWk~~~d-i~mv~~t~---d~K~~Ql~~e~TlvGLs~n~vfriDpRv~~~~kl~~~q~kqy~~k~nFsc~a---- 437 (644)
T KOG2395|consen 366 GKIVEEWKFEDD-INMVDITP---DFKFAQLTSEQTLVGLSDNSVFRIDPRVQGKNKLAVVQSKQYSTKNNFSCFA---- 437 (644)
T ss_pred ceeeeEeeccCC-cceeeccC---CcchhcccccccEEeecCCceEEecccccCcceeeeeeccccccccccceee----
Confidence 666666666655 78888887 432 1 23577899999999863 22 222112111 111 11221
Q ss_pred CCCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCC
Q 000602 190 NLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGS 269 (1398)
Q Consensus 190 s~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~ 269 (1398)
.-..-+||+|+.+|.|++||-- .......+.|-..+|..|..+.||+
T Consensus 438 TT~sG~IvvgS~~GdIRLYdri---------------------------------~~~AKTAlPgLG~~I~hVdvtadGK 484 (644)
T KOG2395|consen 438 TTESGYIVVGSLKGDIRLYDRI---------------------------------GRRAKTALPGLGDAIKHVDVTADGK 484 (644)
T ss_pred ecCCceEEEeecCCcEEeehhh---------------------------------hhhhhhcccccCCceeeEEeeccCc
Confidence 1234589999999999999964 1222334667788999999999999
Q ss_pred EEEEEECCCeEEEEEcC
Q 000602 270 KLVSVSDDRSARIWEVR 286 (1398)
Q Consensus 270 ~LaS~s~Dg~V~iWd~~ 286 (1398)
+++..+.. ++.+-+..
T Consensus 485 wil~Tc~t-yLlLi~t~ 500 (644)
T KOG2395|consen 485 WILATCKT-YLLLIDTL 500 (644)
T ss_pred EEEEeccc-EEEEEEEe
Confidence 87765544 55555543
|
|
| >KOG2444 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=86.59 E-value=2.1 Score=46.17 Aligned_cols=102 Identities=16% Similarity=0.085 Sum_probs=66.5
Q ss_pred CCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc---CCEEEEEeCCCcEEEEcC-CCceEEEE
Q 000602 268 GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIITAGEDCTCRVWGS-DGKQLKMI 343 (1398)
Q Consensus 268 g~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i~vWd~-~g~~l~~l 343 (1398)
+..++.|+.+|.|.+|+....... .. +...+- ..|.+.-.. +.+..+++.||.||.|++ .++.+...
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~~----~d----~~~s~~-e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~g~~ 140 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGAH----SD----RVCSGE-ESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVLGYV 140 (238)
T ss_pred CceEEeecccceEEEecCCccchH----HH----hhhccc-ccceeccccccccceeEEeccCCceeeeccccCceeeee
Confidence 467899999999999988732210 00 011111 122222222 358899999999999999 67777666
Q ss_pred ecccCccEEEEEEcCCCCEEEEE--EcCCcEEEEEcC
Q 000602 344 KEHIGRGIWRCLYDSLSSLLVTA--GFDSAIKVHQFQ 378 (1398)
Q Consensus 344 ~~h~~~~V~sl~~spdg~~latg--g~Dg~I~iwdl~ 378 (1398)
..|...++..+..+..+++|+.. +.|..++.|++.
T Consensus 141 g~h~~~~~e~~ivv~sd~~i~~a~~S~d~~~k~W~ve 177 (238)
T KOG2444|consen 141 GQHNFESGEELIVVGSDEFLKIADTSHDRVLKKWNVE 177 (238)
T ss_pred ccccCCCcceeEEecCCceEEeeccccchhhhhcchh
Confidence 66764456666666666677776 777788888773
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=86.22 E-value=48 Score=40.53 Aligned_cols=157 Identities=15% Similarity=0.111 Sum_probs=82.8
Q ss_pred cEEEEEEeccccccCCCCccceeEEEEEc-C-CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeec
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFG-E-KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d-~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~ 144 (1398)
.+..-+|+ |++... .++.... . ..+.+++++.+. ...+..+.++.. .-+|+|
T Consensus 194 ~~~~p~ws-------~~~~~~-~y~~f~~~~~~~i~~~~l~~g~-------------~~~i~~~~g~~~---~P~fsp-- 247 (425)
T COG0823 194 LILTPAWS-------PDGKKL-AYVSFELGGCPRIYYLDLNTGK-------------RPVILNFNGNNG---APAFSP-- 247 (425)
T ss_pred ceeccccC-------cCCCce-EEEEEecCCCceEEEEeccCCc-------------cceeeccCCccC---CccCCC--
Confidence 45556677 777311 1122222 3 468889998744 233334455443 467899
Q ss_pred CCCcEEEEE-ECCCe--EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEE-CCCeEEEEEcccCCccccCC
Q 000602 145 NGNRSLAIG-CSDNS--IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGT-IYNEIIVWKVDWEHVAPLLN 220 (1398)
Q Consensus 145 ~dg~~Latg-s~Dg~--V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs-~dg~I~vWd~~~~~~~~~~~ 220 (1398)
||+.|+-. ..|+. |.+.|+..+.... +..... +-..-.+ +|||..|+-.+ ..|.-.||-...
T Consensus 248 -DG~~l~f~~~rdg~~~iy~~dl~~~~~~~-Lt~~~g-i~~~Ps~---spdG~~ivf~Sdr~G~p~I~~~~~-------- 313 (425)
T COG0823 248 -DGSKLAFSSSRDGSPDIYLMDLDGKNLPR-LTNGFG-INTSPSW---SPDGSKIVFTSDRGGRPQIYLYDL-------- 313 (425)
T ss_pred -CCCEEEEEECCCCCccEEEEcCCCCccee-cccCCc-cccCccC---CCCCCEEEEEeCCCCCcceEEECC--------
Confidence 99877655 44554 5566776666333 332221 1112222 78888877654 445555554440
Q ss_pred CCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECC-Ce--EEEEEcCC
Q 000602 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDD-RS--ARIWEVRA 287 (1398)
Q Consensus 221 ~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~D-g~--V~iWd~~~ 287 (1398)
.+.....+.-..+.=..-.|+|||++++..+.. |. |.+.|+.+
T Consensus 314 ------------------------~g~~~~riT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~ 359 (425)
T COG0823 314 ------------------------EGSQVTRLTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLAS 359 (425)
T ss_pred ------------------------CCCceeEeeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCC
Confidence 111112222222222266789999999887743 33 44444443
|
|
| >PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases | Back alignment and domain information |
|---|
Probab=86.20 E-value=79 Score=37.35 Aligned_cols=70 Identities=9% Similarity=-0.016 Sum_probs=40.2
Q ss_pred EEecCCccEEEEEEc---------CCEEEEEeCCCcEEEEcC-CCceEE---EE-ecccCccEEEEEEcCCCCEEEEEEc
Q 000602 303 VLYGHNARVWDCCLT---------DSFIITAGEDCTCRVWGS-DGKQLK---MI-KEHIGRGIWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 303 ~~~gh~~~V~~l~~s---------~~~l~sgs~Dg~i~vWd~-~g~~l~---~l-~~h~~~~V~sl~~spdg~~latgg~ 368 (1398)
....+...+..+.|. +.+|++.-..+.|....+ ++..+. .+ ..... .+..+++.|||.+.++-..
T Consensus 247 ~~~~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~-r~~~v~~~pDG~Lyv~~d~ 325 (331)
T PF07995_consen 247 FAYPPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGSVTEEEEFLGGFGG-RPRDVAQGPDGALYVSDDS 325 (331)
T ss_dssp EEETTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEEEEEEEEECTTSSS--EEEEEEETTSEEEEEE-T
T ss_pred eeecCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCCccceEEccccCCC-CceEEEEcCCCeEEEEECC
Confidence 344555666777765 234555444566666666 333222 22 22333 4889999999998888778
Q ss_pred CCcEE
Q 000602 369 DSAIK 373 (1398)
Q Consensus 369 Dg~I~ 373 (1398)
+|.|.
T Consensus 326 ~G~iy 330 (331)
T PF07995_consen 326 DGKIY 330 (331)
T ss_dssp TTTEE
T ss_pred CCeEe
Confidence 88763
|
The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B .... |
| >KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.94 E-value=1.5 Score=56.37 Aligned_cols=99 Identities=17% Similarity=0.289 Sum_probs=67.4
Q ss_pred CcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEE
Q 000602 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLV 272 (1398)
Q Consensus 193 ~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~La 272 (1398)
+..++.|+.-|.+...|+.++ -.+...=..-.++|.+++|+.+|+.++
T Consensus 99 ~~~ivi~Ts~ghvl~~d~~~n--------------------------------L~~~~~ne~v~~~Vtsvafn~dg~~l~ 146 (1206)
T KOG2079|consen 99 VVPIVIGTSHGHVLLSDMTGN--------------------------------LGPLHQNERVQGPVTSVAFNQDGSLLL 146 (1206)
T ss_pred eeeEEEEcCchhhhhhhhhcc--------------------------------cchhhcCCccCCcceeeEecCCCceec
Confidence 446888888888888887711 111111112357899999999999999
Q ss_pred EEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEc-----CCEEEEEeCCCcEEEEcC
Q 000602 273 SVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-----DSFIITAGEDCTCRVWGS 335 (1398)
Q Consensus 273 S~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s-----~~~l~sgs~Dg~i~vWd~ 335 (1398)
.|-.+|.|.+||+..++. .+ .+..|..+...+-+. +..++++..-|. +|.+
T Consensus 147 ~G~~~G~V~v~D~~~~k~-----l~-----~i~e~~ap~t~vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 147 AGLGDGHVTVWDMHRAKI-----LK-----VITEHGAPVTGVIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred cccCCCcEEEEEccCCcc-----ee-----eeeecCCccceEEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 999999999999998765 33 555555555554443 245666655554 5554
|
|
| >PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2 | Back alignment and domain information |
|---|
Probab=85.68 E-value=68 Score=36.15 Aligned_cols=193 Identities=12% Similarity=0.101 Sum_probs=104.0
Q ss_pred eeeeecccCC-CcEEEEEEEeecCCCcEEEEEECCC--eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEE-
Q 000602 123 SLVQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIAS- 198 (1398)
Q Consensus 123 ~~~~~l~~h~-~~V~~v~fsp~~~dg~~Latgs~Dg--~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~las- 198 (1398)
+.+..++... .....+.|.. ++.++-+.+.-| .|+.+|+.+++......-+....--.++.+ +..|.-
T Consensus 34 ~vv~~ypHd~~aFTQGL~~~~---~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~-----~d~l~qL 105 (264)
T PF05096_consen 34 EVVETYPHDPTAFTQGLEFLD---DGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITIL-----GDKLYQL 105 (264)
T ss_dssp EEEEEEE--TT-EEEEEEEEE---TTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEE-----TTEEEEE
T ss_pred EEEEECCCCCcccCccEEecC---CCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEE-----CCEEEEE
Confidence 3444444222 2456788877 888888777666 799999999998877665554333333332 122332
Q ss_pred EECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEECCC
Q 000602 199 GTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278 (1398)
Q Consensus 199 gs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s~Dg 278 (1398)
.=.++...+||.. +.+.+.++. ..+.=++++ .|++.|+......
T Consensus 106 TWk~~~~f~yd~~---------------------------------tl~~~~~~~-y~~EGWGLt--~dg~~Li~SDGS~ 149 (264)
T PF05096_consen 106 TWKEGTGFVYDPN---------------------------------TLKKIGTFP-YPGEGWGLT--SDGKRLIMSDGSS 149 (264)
T ss_dssp ESSSSEEEEEETT---------------------------------TTEEEEEEE--SSS--EEE--ECSSCEEEE-SSS
T ss_pred EecCCeEEEEccc---------------------------------cceEEEEEe-cCCcceEEE--cCCCEEEEECCcc
Confidence 2245777778876 455555553 234556666 4666676666667
Q ss_pred eEEEEEcCCCcccCCCCceEeeeeEEecCCc---cEEEEEEcCCEE-EEEeCCCcEEEEcC-CCceEEEEecc-------
Q 000602 279 SARIWEVRAEYWKDSDSIEEVGSSVLYGHNA---RVWDCCLTDSFI-ITAGEDCTCRVWGS-DGKQLKMIKEH------- 346 (1398)
Q Consensus 279 ~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~---~V~~l~~s~~~l-~sgs~Dg~i~vWd~-~g~~l~~l~~h------- 346 (1398)
.++++|..+-+. .+.+. ...... .+.-+.|.+..| +=.-....|..-|. +|+.+..+...
T Consensus 150 ~L~~~dP~~f~~-----~~~i~---V~~~g~pv~~LNELE~i~G~IyANVW~td~I~~Idp~tG~V~~~iDls~L~~~~~ 221 (264)
T PF05096_consen 150 RLYFLDPETFKE-----VRTIQ---VTDNGRPVSNLNELEYINGKIYANVWQTDRIVRIDPETGKVVGWIDLSGLRPEVG 221 (264)
T ss_dssp EEEEE-TTT-SE-----EEEEE----EETTEE---EEEEEEETTEEEEEETTSSEEEEEETTT-BEEEEEE-HHHHHHHT
T ss_pred ceEEECCcccce-----EEEEE---EEECCEECCCcEeEEEEcCEEEEEeCCCCeEEEEeCCCCeEEEEEEhhHhhhccc
Confidence 899999877544 23222 111222 344455553333 33333445556676 77766655321
Q ss_pred -------cCccEEEEEEcCCCCEEEEEE
Q 000602 347 -------IGRGIWRCLYDSLSSLLVTAG 367 (1398)
Q Consensus 347 -------~~~~V~sl~~spdg~~latgg 367 (1398)
...-...||++|....|...|
T Consensus 222 ~~~~~~~~~dVLNGIAyd~~~~~l~vTG 249 (264)
T PF05096_consen 222 RDKSRQPDDDVLNGIAYDPETDRLFVTG 249 (264)
T ss_dssp STTST--TTS-EEEEEEETTTTEEEEEE
T ss_pred ccccccccCCeeEeEeEeCCCCEEEEEe
Confidence 012478899998877655555
|
3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X. |
| >PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs | Back alignment and domain information |
|---|
Probab=85.57 E-value=1.1e+02 Score=40.21 Aligned_cols=94 Identities=11% Similarity=0.073 Sum_probs=63.1
Q ss_pred CcEEEEEeecCCCEEEEecCCCeEEEEECCCc-----ccccccc-cceeeecccceeccccCcccEEEEEEEeeCCCceE
Q 000602 581 ARIMCLDASFEDEVLFCGDLRGNLVLFPLLRD-----LLNDKSV-ALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTE 654 (1398)
Q Consensus 581 ~~Itsla~Spdg~lLatGs~dGtI~Iwd~~~~-----~~~~~~~-~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~~~ 654 (1398)
-.|..+.++|+|.+||..+..|-.. -.+... .+..... ..++.++....++..+....|..+.|.+.+.++.+
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~v~V-~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRGVVV-LELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCcEEE-EEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 4689999999999999988876544 344321 1111111 12333333334444444478999999998877789
Q ss_pred EEEEcCCccEEEEEEecCCcc
Q 000602 655 IRSTGGDGCICYLEYDKDRES 675 (1398)
Q Consensus 655 L~S~g~DG~i~iw~~~~~~~~ 675 (1398)
|+.-..|+++|+|++.....+
T Consensus 164 l~vLtsdn~lR~y~~~~~~~p 184 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQHP 184 (717)
T ss_pred EEEEecCCEEEEEecCCCCCC
Confidence 999999999999999754433
|
It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells []. |
| >KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.08 E-value=39 Score=44.61 Aligned_cols=123 Identities=7% Similarity=-0.051 Sum_probs=74.4
Q ss_pred CCEEEEEEcCCCCEEE--EEECCCeEEEEEcCCCcccCCCCceEeee-eEEecCCccEEEEEEc---CCEEEEEeCCCcE
Q 000602 257 GSIFRIEWSSCGSKLV--SVSDDRSARIWEVRAEYWKDSDSIEEVGS-SVLYGHNARVWDCCLT---DSFIITAGEDCTC 330 (1398)
Q Consensus 257 ~~I~~vafspdg~~La--S~s~Dg~V~iWd~~~~~~~~~~~~~~i~~-~~~~gh~~~V~~l~~s---~~~l~sgs~Dg~i 330 (1398)
-.|..+...+|+...+ ..+.+-.|..+|+..-.........++.. ++.........++.|. +...+.+..|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 3455566667765433 34445578889997643310000111110 0111122234566676 3567778889999
Q ss_pred EEEcCC--CceEEEEecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEcCCCC
Q 000602 331 RVWGSD--GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFL 381 (1398)
Q Consensus 331 ~vWd~~--g~~l~~l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl~~~~ 381 (1398)
+|..++ ...+..+..-. ..++++|+|.|+.++.|-..|++.-|......
T Consensus 181 ~V~~~~~~~~~v~s~p~t~--~~Tav~WSprGKQl~iG~nnGt~vQy~P~lei 231 (1405)
T KOG3630|consen 181 RVKSTKQLAQNVTSFPVTN--SQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEI 231 (1405)
T ss_pred hhhhhhhhhhhhcccCccc--ceeeEEeccccceeeEecCCCeEEEeecccce
Confidence 998872 23333333222 48999999999999999999999999876543
|
|
| >PRK13684 Ycf48-like protein; Provisional | Back alignment and domain information |
|---|
Probab=84.69 E-value=37 Score=40.16 Aligned_cols=156 Identities=10% Similarity=-0.004 Sum_probs=87.0
Q ss_pred ccceEEEEEEecCCCCCCCCEEEEEeCCcEEEE-ECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEEc
Q 000602 17 LGEISALCFVHLPSHLSSLPFLLAGSGSQVLLY-DLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG 95 (1398)
Q Consensus 17 ~~~Vtalafs~~pd~~~~g~lLaag~dg~I~Iw-d~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g 95 (1398)
.+.+.++++. |+ +.++++|..|.+..- | ..++.-..........++++.+. |++ .+++++.
T Consensus 172 ~g~~~~i~~~--~~----g~~v~~g~~G~i~~s~~-~gg~tW~~~~~~~~~~l~~i~~~-------~~g----~~~~vg~ 233 (334)
T PRK13684 172 AGVVRNLRRS--PD----GKYVAVSSRGNFYSTWE-PGQTAWTPHQRNSSRRLQSMGFQ-------PDG----NLWMLAR 233 (334)
T ss_pred cceEEEEEEC--CC----CeEEEEeCCceEEEEcC-CCCCeEEEeeCCCcccceeeeEc-------CCC----CEEEEec
Confidence 5678899998 88 788888887755432 2 22232222333344578999998 876 5666666
Q ss_pred CCeEEEEEecCCCCCCCCCCCcccccceeeeec-ccCCCcEEEEEEEeecCCCcEEEEEECCCeEEEEEcCCCeEEEEEc
Q 000602 96 EKRVKLFELNFELSPNSQYQPETCVNLSLVQSL-PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 96 d~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l-~~h~~~V~~v~fsp~~~dg~~Latgs~Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.+.+++=..+... ..+..... ..-...+.++.|.| ++..++ ++.+|.|. .....++.-....
T Consensus 234 ~G~~~~~s~d~G~------------sW~~~~~~~~~~~~~l~~v~~~~---~~~~~~-~G~~G~v~-~S~d~G~tW~~~~ 296 (334)
T PRK13684 234 GGQIRFNDPDDLE------------SWSKPIIPEITNGYGYLDLAYRT---PGEIWA-GGGNGTLL-VSKDGGKTWEKDP 296 (334)
T ss_pred CCEEEEccCCCCC------------ccccccCCccccccceeeEEEcC---CCCEEE-EcCCCeEE-EeCCCCCCCeECC
Confidence 6665432222211 11211110 11123578899988 777655 44567554 4455555444433
Q ss_pred c--CCcceEEEEEeecCCCCCcEEEEEECCCeEEEEEcc
Q 000602 175 S--PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVD 211 (1398)
Q Consensus 175 ~--~~~~~~~s~~~~~~s~d~~~lasgs~dg~I~vWd~~ 211 (1398)
. ......+.+.+. ++...+..+..|.|..|+-.
T Consensus 297 ~~~~~~~~~~~~~~~----~~~~~~~~G~~G~il~~~~~ 331 (334)
T PRK13684 297 VGEEVPSNFYKIVFL----DPEKGFVLGQRGVLLRYVGS 331 (334)
T ss_pred cCCCCCcceEEEEEe----CCCceEEECCCceEEEecCC
Confidence 2 122245666553 22344556678888888754
|
|
| >COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=83.37 E-value=17 Score=44.28 Aligned_cols=142 Identities=12% Similarity=0.103 Sum_probs=75.0
Q ss_pred eEEEEEEecCCCCCCCCEEEEEe----C-CcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccCCCCccceeEEEEE
Q 000602 20 ISALCFVHLPSHLSSLPFLLAGS----G-SQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 20 Vtalafs~~pd~~~~g~lLaag~----d-g~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
+..-+|+ |+ ++.++.-+ . ..+.++|+.+++...... +.+ .-..-+|+ ||| ..|+.+
T Consensus 195 ~~~p~ws--~~----~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g-~~~~P~fs-------pDG----~~l~f~ 255 (425)
T COG0823 195 ILTPAWS--PD----GKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNG-NNGAPAFS-------PDG----SKLAFS 255 (425)
T ss_pred eeccccC--cC----CCceEEEEEecCCCceEEEEeccCCccceeec-cCC-ccCCccCC-------CCC----CEEEEE
Confidence 4555677 76 55544432 3 469999999886543333 222 23345688 998 455544
Q ss_pred c--CCeEEEE--EecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEEeecCCCcEEEEEEC-CC--eEEEEEcCCC
Q 000602 95 G--EKRVKLF--ELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DN--SIRVWDISNS 167 (1398)
Q Consensus 95 g--d~~V~vw--dl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fsp~~~dg~~Latgs~-Dg--~V~vWd~~~~ 167 (1398)
. ++...|| |+.... ...+..-.+.-..=.|+| ||+.|+-.+. .| .|.+++++.+
T Consensus 256 ~~rdg~~~iy~~dl~~~~----------------~~~Lt~~~gi~~~Ps~sp---dG~~ivf~Sdr~G~p~I~~~~~~g~ 316 (425)
T COG0823 256 SSRDGSPDIYLMDLDGKN----------------LPRLTNGFGINTSPSWSP---DGSKIVFTSDRGGRPQIYLYDLEGS 316 (425)
T ss_pred ECCCCCccEEEEcCCCCc----------------ceecccCCccccCccCCC---CCCEEEEEeCCCCCcceEEECCCCC
Confidence 3 5655554 554321 112222222222456778 9998776643 44 4566666655
Q ss_pred eEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC-Ce
Q 000602 168 SIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-NE 204 (1398)
Q Consensus 168 ~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d-g~ 204 (1398)
.. ..+....+... ... .+|||.+|+..+.. |.
T Consensus 317 ~~-~riT~~~~~~~-~p~---~SpdG~~i~~~~~~~g~ 349 (425)
T COG0823 317 QV-TRLTFSGGGNS-NPV---WSPDGDKIVFESSSGGQ 349 (425)
T ss_pred ce-eEeeccCCCCc-Ccc---CCCCCCEEEEEeccCCc
Confidence 44 22221111111 111 27899998886643 44
|
|
| >COG3490 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=83.23 E-value=54 Score=36.82 Aligned_cols=105 Identities=13% Similarity=0.076 Sum_probs=73.9
Q ss_pred EEEEEEEeecCCCcEEEEEECCCe-EEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECC-----CeEEEE
Q 000602 135 VFDVCFLKVCNGNRSLAIGCSDNS-IRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-----NEIIVW 208 (1398)
Q Consensus 135 V~~v~fsp~~~dg~~Latgs~Dg~-V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~d-----g~I~vW 208 (1398)
-..++|+|. ...-++.+-.-|+ ..++|....+.+..+...+..-.|---. +++||.+|++.-.| |.|-||
T Consensus 70 ~Hgi~~~p~--~~ravafARrPGtf~~vfD~~~~~~pv~~~s~~~RHfyGHGv--fs~dG~~LYATEndfd~~rGViGvY 145 (366)
T COG3490 70 GHGIAFHPA--LPRAVAFARRPGTFAMVFDPNGAQEPVTLVSQEGRHFYGHGV--FSPDGRLLYATENDFDPNRGVIGVY 145 (366)
T ss_pred cCCeecCCC--CcceEEEEecCCceEEEECCCCCcCcEEEecccCceeecccc--cCCCCcEEEeecCCCCCCCceEEEE
Confidence 346788872 3445666666555 5678998888877776655544443222 37899999886443 678888
Q ss_pred EcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE
Q 000602 209 KVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275 (1398)
Q Consensus 209 d~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s 275 (1398)
|.+ ...+.+..+..|.-....+.+.+||+.++.+.
T Consensus 146 d~r--------------------------------~~fqrvgE~~t~GiGpHev~lm~DGrtlvvan 180 (366)
T COG3490 146 DAR--------------------------------EGFQRVGEFSTHGIGPHEVTLMADGRTLVVAN 180 (366)
T ss_pred ecc--------------------------------cccceecccccCCcCcceeEEecCCcEEEEeC
Confidence 876 24566777888888888999999999988764
|
|
| >KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only] | Back alignment and domain information |
|---|
Probab=82.09 E-value=55 Score=41.77 Aligned_cols=164 Identities=13% Similarity=0.129 Sum_probs=84.7
Q ss_pred cEEEEeCCcCe--------eccceEEEEEEecCCCCCCCCEEEEEe-C------CcEEEEECCCCeEEE--EEEeeeCcc
Q 000602 5 DLSEWRLDVGQ--------YLGEISALCFVHLPSHLSSLPFLLAGS-G------SQVLLYDLEAGTLIR--PFQVFHGIR 67 (1398)
Q Consensus 5 tv~iWdl~~~~--------h~~~Vtalafs~~pd~~~~g~lLaag~-d------g~I~Iwd~~tg~~l~--~~~~~~~~~ 67 (1398)
++..+|..+++ ....-.++++. .+ .+.++|+ + .++-.||..+.+-.. ..... + .
T Consensus 302 ~ve~yd~~~~~w~~~a~m~~~r~~~~~~~~--~~-----~lYv~GG~~~~~~~l~~ve~YD~~~~~W~~~a~M~~~-R-~ 372 (571)
T KOG4441|consen 302 SVECYDPKTNEWSSLAPMPSPRCRVGVAVL--NG-----KLYVVGGYDSGSDRLSSVERYDPRTNQWTPVAPMNTK-R-S 372 (571)
T ss_pred eeEEecCCcCcEeecCCCCcccccccEEEE--CC-----EEEEEccccCCCcccceEEEecCCCCceeccCCccCc-c-c
Confidence 46667766664 23335566676 43 5566665 5 468889988766322 22211 1 1
Q ss_pred EEEEEEeccccccCCCCccceeEEEEEc-C-----CeEEEEEecCCCCCCCCCCCcccccceeeeecccCCCcEEEEEEE
Q 000602 68 LHGISCNFINCTEGSVSTRVTFEVALFG-E-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFL 141 (1398)
Q Consensus 68 V~~i~fs~~~~~~~pdg~~~~~~la~~g-d-----~~V~vwdl~~~~~~~~~~~~~~~~~~~~~~~l~~h~~~V~~v~fs 141 (1398)
=++++.. +| .+.|++| + .+|..||..+.. +..+..+.. ........
T Consensus 373 ~~~v~~l--------~g----~iYavGG~dg~~~l~svE~YDp~~~~-------------W~~va~m~~---~r~~~gv~ 424 (571)
T KOG4441|consen 373 DFGVAVL--------DG----KLYAVGGFDGEKSLNSVECYDPVTNK-------------WTPVAPMLT---RRSGHGVA 424 (571)
T ss_pred cceeEEE--------CC----EEEEEeccccccccccEEEecCCCCc-------------ccccCCCCc---ceeeeEEE
Confidence 2233332 23 5666666 4 357777776533 444443332 22222222
Q ss_pred eecCCCcEEEEEECCC------eEEEEEcCCCeEEEEEccCCcceEEEEEeecCCCCCcEEEEEECCCe-----EEEEEc
Q 000602 142 KVCNGNRSLAIGCSDN------SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNE-----IIVWKV 210 (1398)
Q Consensus 142 p~~~dg~~Latgs~Dg------~V~vWd~~~~~~~~~l~~~~~~~~~s~~~~~~s~d~~~lasgs~dg~-----I~vWd~ 210 (1398)
.. +|.+.++||.++ ++..||..++.....-.-........++. -++.+.+.|+.|+. |..+|+
T Consensus 425 ~~--~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~g~a~----~~~~iYvvGG~~~~~~~~~VE~ydp 498 (571)
T KOG4441|consen 425 VL--GGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGFGVAV----LNGKIYVVGGFDGTSALSSVERYDP 498 (571)
T ss_pred EE--CCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccceEEE----ECCEEEEECCccCCCccceEEEEcC
Confidence 21 778888887544 57788888765433222111111112222 25667777777662 555665
Q ss_pred c
Q 000602 211 D 211 (1398)
Q Consensus 211 ~ 211 (1398)
.
T Consensus 499 ~ 499 (571)
T KOG4441|consen 499 E 499 (571)
T ss_pred C
Confidence 5
|
|
| >KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=81.25 E-value=89 Score=34.16 Aligned_cols=47 Identities=11% Similarity=0.204 Sum_probs=36.6
Q ss_pred EEEcCCCCEEEEEECCCeEEEEEcCCCcccCCCCceEeeeeEEecCCccEEEEEEcC
Q 000602 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD 318 (1398)
Q Consensus 262 vafspdg~~LaS~s~Dg~V~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~l~~s~ 318 (1398)
++...+|.+.+++-..++|...|..+++. +.++ .-.+..|++++|-+
T Consensus 217 m~ID~eG~L~Va~~ng~~V~~~dp~tGK~-----L~ei-----klPt~qitsccFgG 263 (310)
T KOG4499|consen 217 MTIDTEGNLYVATFNGGTVQKVDPTTGKI-----LLEI-----KLPTPQITSCCFGG 263 (310)
T ss_pred ceEccCCcEEEEEecCcEEEEECCCCCcE-----EEEE-----EcCCCceEEEEecC
Confidence 44466788888888899999999999987 4433 33478899999985
|
|
| >PF14727 PHTB1_N: PTHB1 N-terminus | Back alignment and domain information |
|---|
Probab=80.85 E-value=1.4e+02 Score=36.26 Aligned_cols=152 Identities=13% Similarity=0.193 Sum_probs=87.1
Q ss_pred CCCcEEEEEECCCeEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcC----
Q 000602 191 LEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSS---- 266 (1398)
Q Consensus 191 ~d~~~lasgs~dg~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafsp---- 266 (1398)
.+...|+.|+..|.++|+++..+...+ ...+.. ..-..+|..|..-+
T Consensus 35 ~~~d~IivGS~~G~LrIy~P~~~~~~~----------------------------~~lllE-~~l~~PILqv~~G~F~s~ 85 (418)
T PF14727_consen 35 SGSDKIIVGSYSGILRIYDPSGNEFQP----------------------------EDLLLE-TQLKDPILQVECGKFVSG 85 (418)
T ss_pred CCccEEEEeccccEEEEEccCCCCCCC----------------------------ccEEEE-EecCCcEEEEEeccccCC
Confidence 356789999999999999986222111 111111 12345666665432
Q ss_pred -CCCEEEEEECCCeEEEEEcCCCccc--CCCCceEeeeeEEecCCccE--EEEEEc-------CCEEEEEeCCCcEEEEc
Q 000602 267 -CGSKLVSVSDDRSARIWEVRAEYWK--DSDSIEEVGSSVLYGHNARV--WDCCLT-------DSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 267 -dg~~LaS~s~Dg~V~iWd~~~~~~~--~~~~~~~i~~~~~~gh~~~V--~~l~~s-------~~~l~sgs~Dg~i~vWd 334 (1398)
+...||. =.-+.+.+|.+...... .+.. -.+ ...+.|.-.- +.++.- ..+|..=+.||++.+|+
T Consensus 86 ~~~~~LaV-LhP~kl~vY~v~~~~g~~~~g~~-~~L--~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~fe 161 (418)
T PF14727_consen 86 SEDLQLAV-LHPRKLSVYSVSLVDGTVEHGNQ-YQL--ELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFE 161 (418)
T ss_pred CCcceEEE-ecCCEEEEEEEEecCCCcccCcE-EEE--EEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEe
Confidence 2223333 45567888887432210 0000 111 1444444322 222221 16888899999999999
Q ss_pred CCCceEEE-EecccCccEEEEEEcCCCCEEEEEEcCCcEEEEEc
Q 000602 335 SDGKQLKM-IKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 335 ~~g~~l~~-l~~h~~~~V~sl~~spdg~~latgg~Dg~I~iwdl 377 (1398)
-+.-.... +...-- ---+.|.+....+++++.+..+.-|..
T Consensus 162 qe~~~f~~~lp~~ll--PgPl~Y~~~tDsfvt~sss~~l~~Yky 203 (418)
T PF14727_consen 162 QESFAFSRFLPDFLL--PGPLCYCPRTDSFVTASSSWTLECYKY 203 (418)
T ss_pred CCcEEEEEEcCCCCC--CcCeEEeecCCEEEEecCceeEEEecH
Confidence 75544332 222111 224778888889999999999999887
|
|
| >TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family | Back alignment and domain information |
|---|
Probab=80.77 E-value=1.7e+02 Score=37.05 Aligned_cols=114 Identities=11% Similarity=0.066 Sum_probs=59.8
Q ss_pred EEEEE-eCCcEEEEECCCCeEEEEEEeeeCccEEEEEEeccccccC---CCCccceeEEEEEcCCeEEEEEecCCCCCCC
Q 000602 37 FLLAG-SGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEG---SVSTRVTFEVALFGEKRVKLFELNFELSPNS 112 (1398)
Q Consensus 37 lLaag-~dg~I~Iwd~~tg~~l~~~~~~~~~~V~~i~fs~~~~~~~---pdg~~~~~~la~~gd~~V~vwdl~~~~~~~~ 112 (1398)
.|..+ .++.|+-.|.++|+.+-++.......+........ .... -++ ++++...++.+.-+|.+++.
T Consensus 71 ~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~~~~~~~~~~~-~~rg~av~~~----~v~v~t~dg~l~ALDa~TGk---- 141 (527)
T TIGR03075 71 VMYVTTSYSRVYALDAKTGKELWKYDPKLPDDVIPVMCCDV-VNRGVALYDG----KVFFGTLDARLVALDAKTGK---- 141 (527)
T ss_pred EEEEECCCCcEEEEECCCCceeeEecCCCCccccccccccc-ccccceEECC----EEEEEcCCCEEEEEECCCCC----
Confidence 44444 47899999999999988776421111211000000 0000 122 55665668888888887633
Q ss_pred CCCCcccccceeeeecc--cCC--CcEEEEEEEeecCCCcEEEEEEC------CCeEEEEEcCCCeEEEEEc
Q 000602 113 QYQPETCVNLSLVQSLP--RLS--HWVFDVCFLKVCNGNRSLAIGCS------DNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~--~h~--~~V~~v~fsp~~~dg~~Latgs~------Dg~V~vWd~~~~~~~~~l~ 174 (1398)
.+.... .+. ..+.+--..- ++ .|+++.. +|.|.-+|.++|+.+-+..
T Consensus 142 -----------~~W~~~~~~~~~~~~~tssP~v~---~g-~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~ 198 (527)
T TIGR03075 142 -----------VVWSKKNGDYKAGYTITAAPLVV---KG-KVITGISGGEFGVRGYVTAYDAKTGKLVWRRY 198 (527)
T ss_pred -----------EEeecccccccccccccCCcEEE---CC-EEEEeecccccCCCcEEEEEECCCCceeEecc
Confidence 222111 111 0111111111 34 3444432 6899999999999887654
|
This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens. |
| >PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes [] | Back alignment and domain information |
|---|
Probab=80.54 E-value=21 Score=45.71 Aligned_cols=124 Identities=10% Similarity=0.089 Sum_probs=76.0
Q ss_pred CCcEEEEEcCCCcEEEEecCCCCC----c-cccccCccceeeeeeeeccccCCcEEEEEee--cCCCEEEEecCCCeEEE
Q 000602 534 GHRFIFTADPKGRLKLWQLCDPFS----S-VCYESSKTNNVFLVAEFSSCFGARIMCLDAS--FEDEVLFCGDLRGNLVL 606 (1398)
Q Consensus 534 d~~~L~s~s~dg~I~iWdi~~~~~----~-~~~~~~~~~~l~l~~~~~~~h~~~Itsla~S--pdg~lLatGs~dGtI~I 606 (1398)
+...|+.+..||.|.+|.++.-.. . ...... .........|...-...+..||+. ...++||+++....|.|
T Consensus 113 ~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~-~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTV 191 (717)
T PF08728_consen 113 GEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSG-FSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTV 191 (717)
T ss_pred CeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccc-cccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEE
Confidence 556788899999999997642110 0 000000 000111112333445678899998 88999999999999998
Q ss_pred EECCCcccccccccceeeecccceeccccCcccEEEEEEEeeCCCc---eEEEEEcCCccEEEEEEe
Q 000602 607 FPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQ---TEIRSTGGDGCICYLEYD 670 (1398)
Q Consensus 607 wd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsV~~~~~~~~~---~~L~S~g~DG~i~iw~~~ 670 (1398)
|-+..... +....... .|+ ..|-+|+|.+...+. ..|+.++-.|.+-+|++.
T Consensus 192 Faf~l~~~---------r~~~~~s~--~~~-hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I~ 246 (717)
T PF08728_consen 192 FAFALVDE---------RFYHVPSH--QHS-HNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKIK 246 (717)
T ss_pred EEEecccc---------cccccccc--ccc-cCCCeeEeecCCCCCccceEEEEEeccCcEEEEEEE
Confidence 87664200 11111001 122 568899999765332 378889999999998884
|
RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance []. |
| >PF15390 DUF4613: Domain of unknown function (DUF4613) | Back alignment and domain information |
|---|
Probab=80.28 E-value=91 Score=38.64 Aligned_cols=123 Identities=15% Similarity=0.263 Sum_probs=66.3
Q ss_pred CcEEEEEEEeecC-CCcEEEEEECCCeEEEEEcC-----CCeEEEEEccCCcc---eEEEEEeecCCCCCcEEEEEECCC
Q 000602 133 HWVFDVCFLKVCN-GNRSLAIGCSDNSIRVWDIS-----NSSIILEVHSPERC---LLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 133 ~~V~~v~fsp~~~-dg~~Latgs~Dg~V~vWd~~-----~~~~~~~l~~~~~~---~~~s~~~~~~s~d~~~lasgs~dg 203 (1398)
..|..+.|.|... +-..|+.......|.||-+. +++.+..-.+..+. ++-.-+.| .|....|+.-+...
T Consensus 57 EhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVW--HPk~~iL~VLT~~d 134 (671)
T PF15390_consen 57 EHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVW--HPKKAILTVLTARD 134 (671)
T ss_pred ceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeeccCCcccCCCcccc--cCCCceEEEEecCc
Confidence 4588999998432 22244445677899999985 22222211111100 00011111 34555666655544
Q ss_pred eEEEEEcccCCccccCCCCCCCCCCCCCCCcceeeecccccceeEEEEEeCccCCEEEEEEcCCCCEEEEEE-CCCeEEE
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS-DDRSARI 282 (1398)
Q Consensus 204 ~I~vWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~~~~l~gH~~~I~~vafspdg~~LaS~s-~Dg~V~i 282 (1398)
.-.+.++.. . ..+....+ .-.+.|.+.+|.+||++|+.+- ..-.-++
T Consensus 135 vSV~~sV~~------------------------------d-~srVkaDi-~~~G~IhCACWT~DG~RLVVAvGSsLHSyi 182 (671)
T PF15390_consen 135 VSVLPSVHC------------------------------D-SSRVKADI-KTSGLIHCACWTKDGQRLVVAVGSSLHSYI 182 (671)
T ss_pred eeEeeeeee------------------------------C-CceEEEec-cCCceEEEEEecCcCCEEEEEeCCeEEEEE
Confidence 444555540 0 12222233 3568899999999999876643 3445678
Q ss_pred EEcCCCc
Q 000602 283 WEVRAEY 289 (1398)
Q Consensus 283 Wd~~~~~ 289 (1398)
||-....
T Consensus 183 Wd~~qKt 189 (671)
T PF15390_consen 183 WDSAQKT 189 (671)
T ss_pred ecCchhh
Confidence 8866543
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 1398 | ||||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 3e-07 | ||
| 2ymu_A | 577 | Structure Of A Highly Repetitive Propeller Structur | 5e-06 | ||
| 1erj_A | 393 | Crystal Structure Of The C-Terminal Wd40 Domain Of | 8e-06 | ||
| 2cnx_A | 315 | Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2. | 4e-05 | ||
| 2co0_A | 315 | Wdr5 And Unmodified Histone H3 Complex At 2.25 Angs | 4e-05 | ||
| 2xl2_A | 334 | Wdr5 In Complex With An Rbbp5 Peptide Recruited To | 6e-05 | ||
| 2gnq_A | 336 | Structure Of Wdr5 Length = 336 | 6e-05 | ||
| 3emh_A | 318 | Structural Basis Of Wdr5-Mll Interaction Length = 3 | 7e-05 | ||
| 2h9l_A | 329 | Wdr5delta23 Length = 329 | 7e-05 | ||
| 3psl_A | 318 | Fine-Tuning The Stimulation Of Mll1 Methyltransfera | 7e-05 | ||
| 4a7j_A | 318 | Symmetric Dimethylation Of H3 Arginine 2 Is A Novel | 7e-05 | ||
| 2g99_A | 308 | Structural Basis For The Specific Recognition Of Me | 8e-05 | ||
| 2h68_A | 312 | Histone H3 Recognition And Presentation By The Wdr5 | 8e-05 | ||
| 3smr_A | 312 | Crystal Structure Of Human Wd Repeat Domain 5 With | 8e-05 | ||
| 2h9m_A | 313 | Wdr5 In Complex With Unmodified H3k4 Peptide Length | 8e-05 | ||
| 2h13_A | 317 | Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length | 8e-05 | ||
| 3n0d_A | 315 | Crystal Structure Of Wdr5 Mutant (W330f) Length = 3 | 9e-05 | ||
| 2g9a_A | 311 | Structural Basis For The Specific Recognition Of Me | 9e-05 | ||
| 3n0e_A | 315 | Crystal Structure Of Wdr5 Mutant (W330y) Length = 3 | 9e-05 | ||
| 3mxx_A | 315 | Crystal Structure Of Wdr5 Mutant (S62a) Length = 31 | 2e-04 |
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure Length = 577 | Back alignment and structure |
|
| >pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1 Length = 393 | Back alignment and structure |
|
| >pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom Length = 315 | Back alignment and structure |
|
| >pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel Site Length = 334 | Back alignment and structure |
|
| >pdb|2GNQ|A Chain A, Structure Of Wdr5 Length = 336 | Back alignment and structure |
|
| >pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction Length = 318 | Back alignment and structure |
|
| >pdb|2H9L|A Chain A, Wdr5delta23 Length = 329 | Back alignment and structure |
|
| >pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase Activity By A Histone H3 Based Peptide Mimetic Length = 318 | Back alignment and structure |
|
| >pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel Histone Mark That Supports Euchromatin Maintenance Length = 318 | Back alignment and structure |
|
| >pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 308 | Back alignment and structure |
|
| >pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module Of The Mll1 Complex Length = 312 | Back alignment and structure |
|
| >pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With Compound Length = 312 | Back alignment and structure |
|
| >pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide Length = 313 | Back alignment and structure |
|
| >pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX Length = 317 | Back alignment and structure |
|
| >pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f) Length = 315 | Back alignment and structure |
|
| >pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5 Length = 311 | Back alignment and structure |
|
| >pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y) Length = 315 | Back alignment and structure |
|
| >pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a) Length = 315 | Back alignment and structure |
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 1398 | ||||
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 7e-12 | |
| d1vyhc1 | 317 | b.69.4.1 (C:92-408) Platelet-activating factor ace | 6e-09 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 4e-11 | |
| d1tbga_ | 340 | b.69.4.1 (A:) beta1-subunit of the signal-transduc | 2e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 3e-10 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 7e-05 | |
| d1erja_ | 388 | b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yea | 8e-04 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-08 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 2e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 3e-05 | |
| d2ovrb2 | 342 | b.69.4.1 (B:2365-2706) F-box/WD repeat-containing | 0.002 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 3e-08 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 8e-07 | |
| d1p22a2 | 293 | b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (be | 1e-05 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 6e-08 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.001 | |
| d1nr0a2 | 299 | b.69.4.1 (A:313-611) Actin interacting protein 1 { | 0.002 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-07 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 1e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 7e-05 | |
| d1sq9a_ | 393 | b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Bake | 0.002 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-06 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 1e-04 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.001 | |
| d1gxra_ | 337 | b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Hum | 0.002 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 9e-06 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 7e-05 | |
| d1k8kc_ | 371 | b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 | 0.002 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 1e-05 | |
| d1yfqa_ | 342 | b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Bake | 2e-04 | |
| d1k32a3 | 360 | b.69.9.1 (A:320-679) Tricorn protease domain 2 {Ar | 3e-05 | |
| d1jmxb_ | 346 | b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase | 6e-04 | |
| d1pgua2 | 287 | b.69.4.1 (A:327-613) Actin interacting protein 1 { | 6e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 9e-04 | |
| d1nr0a1 | 311 | b.69.4.1 (A:2-312) Actin interacting protein 1 {Ne | 0.003 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.001 | |
| d1nexb2 | 355 | b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker' | 0.003 | |
| d1pgua1 | 325 | b.69.4.1 (A:2-326) Actin interacting protein 1 {Ba | 0.003 |
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 65.9 bits (159), Expect = 7e-12
Identities = 50/331 (15%), Positives = 102/331 (30%), Gaps = 47/331 (14%)
Query: 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77
++ + F + S + S A + + ++D E G R + +
Sbjct: 18 SPVTRVIFHPVFSVMVS-----ASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGK 72
Query: 78 CTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137
+ G + ++ + + P +S + V
Sbjct: 73 LLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQT 132
Query: 138 VCFLKVCNGNRS-------------LAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184
+K G+R +A +D ++RVW ++ E+ + +
Sbjct: 133 GYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVVATKECKAELREHRHVV-ECI 191
Query: 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQH 244
++ + + G S D K K+ D
Sbjct: 192 SWAPES--------------SYSSISEATGSETKKSGKPGPFLLSGSRD-KTIKMWDVS- 235
Query: 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL 304
T + L LVGH+ + + + S G ++S +DD++ R+W D + + L
Sbjct: 236 TGMCLMTLVGHDNWVRGVLFHSGGKFILSCADDKTLRVW--------DYKNKRCM--KTL 285
Query: 305 YGHNARVWDCCL--TDSFIITAGEDCTCRVW 333
H V T +++T D T +VW
Sbjct: 286 NAHEHFVTSLDFHKTAPYVVTGSVDQTVKVW 316
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 317 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Score = 56.7 bits (135), Expect = 6e-09
Identities = 52/305 (17%), Positives = 94/305 (30%), Gaps = 41/305 (13%)
Query: 250 FRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNA 309
+ L GH + R+ + S +VS S+D + ++W+ ++ L GH
Sbjct: 11 YALSGHRSPVTRVIFHPVFSVMVSASEDATIKVWDYETGDFE----------RTLKGHTD 60
Query: 310 RVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAG 367
V D S + A + D + + I+ G + +V+A
Sbjct: 61 SVQDISFDHSGKLLASCSADMTIKLWDFQGFECIRTMHGHDHNVSSVSIMPNGDHIVSAS 120
Query: 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427
D IK+ + Q + K F G E + PN + + S + VR +
Sbjct: 121 RDKTIKMWEVQ--------TGYCVKTFTGHREWVRMVRPNQDGTLIASCSNDQTVRVWVV 172
Query: 428 TSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487
+++ H ++ +S + +SE P G D
Sbjct: 173 ATKECKAELREHRHVVECISWAPESSYSS----ISEATGSETKKSGKPGPFLLSGSRDKT 228
Query: 488 ALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRL 547
+ DV T T R + G +FI + L
Sbjct: 229 I------------KMWDVSTGMCLMTLVGHDNWVRGV-----LFHSGGKFILSCADDKTL 271
Query: 548 KLWQL 552
++W
Sbjct: 272 RVWDY 276
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 63.6 bits (153), Expect = 4e-11
Identities = 36/203 (17%), Positives = 59/203 (29%), Gaps = 47/203 (23%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192
DV L + R G D S ++WD+ E
Sbjct: 182 GHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHESD------------- 228
Query: 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL 252
+ + + P GN S D C + + +
Sbjct: 229 --------------INAICF--------FPNGNAFATGSDDATCRLFDLRADQELMTYSH 266
Query: 253 VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVW 312
I + +S G L++ DD + +W D+ + G VL GH+ RV
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW--------DALKADRAG--VLAGHDNRVS 316
Query: 313 DCCLTD--SFIITAGEDCTCRVW 333
+TD + T D ++W
Sbjct: 317 CLGVTDDGMAVATGSWDSFLKIW 339
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} Length = 340 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Score = 61.7 bits (148), Expect = 2e-10
Identities = 38/257 (14%), Positives = 76/257 (29%), Gaps = 15/257 (5%)
Query: 125 VQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSM 184
V ++P S WV + N + + + + + + L
Sbjct: 90 VHAIPLRSSWVMTCAYAPSGNYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCC 149
Query: 185 KLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHG------SSSDFKCFK 238
+ DN T I S + K
Sbjct: 150 RFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLAPDTRLFVSGACDASAK 209
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
L D + + GHE I I + G+ + SDD + R++++RA+ + S +
Sbjct: 210 LWDVR-EGMCRQTFTGHESDINAICFFPNGNAFATGSDDATCRLFDLRADQELMTYSHDN 268
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYD 357
+ + + ++ +D C VW + ++ H R +
Sbjct: 269 IICGI------TSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNR-VSCLGVT 321
Query: 358 SLSSLLVTAGFDSAIKV 374
+ T +DS +K+
Sbjct: 322 DDGMAVATGSWDSFLKI 338
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 61.4 bits (147), Expect = 3e-10
Identities = 39/273 (14%), Positives = 85/273 (31%), Gaps = 19/273 (6%)
Query: 125 VQSLPRLSHWVFDVCFLKVCN----GNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
S P ++ VCF G I D R + +++S +
Sbjct: 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFP 173
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCF--- 237
+ G +RI + ++ ++ +G + S D
Sbjct: 174 SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWD 233
Query: 238 --KLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295
+ GH+ S++ + ++ G +VS S DRS ++W ++ K
Sbjct: 234 SETGFLVERLDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSK 293
Query: 296 IEEVGSSVLYGHNARVWDCCLT----DSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGR- 349
G+ + + + + D +I++ +D W G L M++ H
Sbjct: 294 TPNSGTCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRNSV 353
Query: 350 ----GIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378
++ T D ++ +++
Sbjct: 354 ISVAVANGSSLGPEYNVFATGSGDCKARIWKYK 386
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.4 bits (103), Expect = 7e-05
Identities = 39/274 (14%), Positives = 82/274 (29%), Gaps = 41/274 (14%)
Query: 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALR 195
VC +K N LA GC + + +V+ +S+ S++ L S ++ L
Sbjct: 65 VCCVKFSNDGEYLATGC-NKTTQVYRVSDGSLVARLSDDSAANKDPENLNTSSSPSSDLY 123
Query: 196 I------------ASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243
I A+G I +W ++ + +L E + +
Sbjct: 124 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPSGDKLVSGSG 183
Query: 244 HTAVNLFRL---------VGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD 294
V ++ L +G G + + S DR+ R+W+ + +
Sbjct: 184 DRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVERL 243
Query: 295 SIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLK----------- 341
E + GH V+ T +++ D + ++W K
Sbjct: 244 DSE---NESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSDSKTPNSGTC 300
Query: 342 -MIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
+ + +++ D +
Sbjct: 301 EVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLF 334
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 388 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.9 bits (94), Expect = 8e-04
Identities = 19/132 (14%), Positives = 51/132 (38%), Gaps = 11/132 (8%)
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR------ 286
+ + + V L + + H + +++S+ G L + + + +++ V
Sbjct: 39 YYILYNPALPREIDVELHKSLDHTSVVCCVKFSNDGEYLATGCNK-TTQVYRVSDGSLVA 97
Query: 287 --AEYWKDSDSIEEVGSSVLYGHNARVWDCCL--TDSFIITAGEDCTCRVWGSDGKQLKM 342
++ + E + +S + + C F+ T ED R+W + +++ M
Sbjct: 98 RLSDDSAANKDPENLNTSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVM 157
Query: 343 IKEHIGRGIWRC 354
I + + I+
Sbjct: 158 ILQGHEQDIYSL 169
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 55.2 bits (131), Expect = 3e-08
Identities = 35/233 (15%), Positives = 67/233 (28%), Gaps = 20/233 (8%)
Query: 145 NGNRSLAIGCSDNSIRVWDISNSSII--LEVHS-PERCLLYSMKLWGDNLEALRIASGTI 201
GNR + G DN+++VW + L H+ + +
Sbjct: 26 CGNR-IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGVWSSQMRDNIIISGSTDRTLKVWNA 84
Query: 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFR 261
+ + S D + +++
Sbjct: 85 ETGECIHTLYGHTSTVRCMHLHEKRVVSGSRDATLRVWDIETGQCLHVL----MGHVAAV 140
Query: 262 IEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFI 321
G ++VS + D ++W+ E L GH RV+ +
Sbjct: 141 RCVQYDGRRVVSGAYDFMVKVWDPETETCL----------HTLQGHTNRVYSLQFDGIHV 190
Query: 322 ITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
++ D + RVW D + I G + ++LV+ DS +K+
Sbjct: 191 VSGSLDTSIRVW--DVETGNCIHTLTGHQSLTSGMELKDNILVSGNADSTVKI 241
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.0 bits (107), Expect = 2e-05
Identities = 60/368 (16%), Positives = 108/368 (29%), Gaps = 47/368 (12%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH+ + CG+++VS SDD + ++W L GH V
Sbjct: 12 LKGHDDHVITC-LQFCGNRIVSGSDDNTLKVWSAVTGKCL----------RTLVGHTGGV 60
Query: 312 WDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371
W + D+ II+ D T +VW ++ + + V+ D+
Sbjct: 61 WSSQMRDNIIISGSTDRTLKVWNAETGECIHTLYGHTSTVRCMHLHEKRV--VSGSRDAT 118
Query: 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSED 431
++V + + A + + + + +++ D E CLH
Sbjct: 119 LRVWDIETGQCLHVLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWD--PETETCLHTLQGH 176
Query: 432 TLYIATNHGYLYHTKLCDMDS------VNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485
T + + H +D+ V + G + + D+
Sbjct: 177 TNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQSLTSGMELK--------DN 228
Query: 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545
+ G+ + I + L C F+ T+ G
Sbjct: 229 ILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQ--------SAVTCLQFNKNFVITSSDDG 280
Query: 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLV 605
+KLW L + LV S G + + AS V G G
Sbjct: 281 TVKLWDL----------KTGEFIRNLVTLESGGSGGVVWRIRASNTKLVCAVGSRNGTEE 330
Query: 606 LFPLLRDL 613
L+ D
Sbjct: 331 TKLLVLDF 338
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 26/210 (12%), Positives = 71/210 (33%), Gaps = 27/210 (12%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192
V R + G D ++VWD + + + ++ +++ +
Sbjct: 133 LMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQG------HTNRVYSLQFD 186
Query: 193 ALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDF-----------KCFKLQD 241
+ + SG++ I VW V+ + +++ G+ + S + K+ D
Sbjct: 187 GIHVVSGSLDTSIRVWDVETGN---CIHTLTGHQSLTSGMELKDNILVSGNADSTVKIWD 243
Query: 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301
+ ++ + +++ SDD + ++W+++ + I + +
Sbjct: 244 IKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK-----TGEFIRNLVT 298
Query: 302 SVLYGHNARVWDCCLTDS--FIITAGEDCT 329
G VW +++ + T
Sbjct: 299 LESGGSGGVVWRIRASNTKLVCAVGSRNGT 328
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 16/48 (33%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
Query: 303 VLYGHNARVWDCC-LTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIG 348
VL GH+ V C + I++ +D T +VW GK L+ + H G
Sbjct: 11 VLKGHDDHVITCLQFCGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG 58
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.5 bits (129), Expect = 3e-08
Identities = 41/256 (16%), Positives = 80/256 (31%), Gaps = 19/256 (7%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSII--LEVHSPER 178
+L + S V+ + + + + + G DN+I++WD + L H+
Sbjct: 4 SLQRIHCRSETSKGVYCLQY----DDQK-IVSGLRDNTIKIWDKNTLECKRILTGHTGSV 58
Query: 179 CLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFK 238
L + + N + H +L+ N + S +
Sbjct: 59 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIA 118
Query: 239 LQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEE 298
+ D R V +VS S DR+ ++W + +
Sbjct: 119 VWDMASPTDITLRRVLVGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRT----- 173
Query: 299 VGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDS 358
L GH + D +++ D T R+W D + ++ G
Sbjct: 174 -----LNGHKRGIACLQYRDRLVVSGSSDNTIRLW--DIECGACLRVLEGHEELVRCIRF 226
Query: 359 LSSLLVTAGFDSAIKV 374
+ +V+ +D IKV
Sbjct: 227 DNKRIVSGAYDGKIKV 242
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.2 bits (118), Expect = 8e-07
Identities = 34/164 (20%), Positives = 57/164 (34%), Gaps = 37/164 (22%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
V++L + + + +R + G SDN+IR+WDI + + + E +
Sbjct: 167 TCEFVRTLNGHKRGIACLQY-----RDRLVVSGSSDNTIRLWDIECGACLRVLEGHEELV 221
Query: 181 LYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ 240
RI SG +I VW D
Sbjct: 222 RCIRFDNK------RIVSGAYDGKIKVW------------------------DLVAALDP 251
Query: 241 DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWE 284
+ L LV H G +FR+++ ++VS S D + IW+
Sbjct: 252 RAPAGTLCLRTLVEHSGRVFRLQFD--EFQIVSSSHDDTILIWD 293
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 293 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 13/70 (18%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Query: 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIIT 323
++VS + D ++W++ A + + + L H+ RV+ + I++
Sbjct: 224 IRFDNKRIVSGAYDGKIKVWDLVAALDPRAPAGTLCLRT-LVEHSGRVFRLQFDEFQIVS 282
Query: 324 AGEDCTCRVW 333
+ D T +W
Sbjct: 283 SSHDDTILIW 292
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 53.8 bits (127), Expect = 6e-08
Identities = 34/304 (11%), Positives = 80/304 (26%), Gaps = 17/304 (5%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
GH +I + S+ G L S + W++ H +
Sbjct: 8 RYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISN---------RVFPDVHATMI 58
Query: 312 WDCCLTDSF-IITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSL--SSLLVTAGF 368
T + T D +V + G + K + + L ++ + A
Sbjct: 59 TGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVAAC 118
Query: 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428
I ++ + + + + ++ + + S +
Sbjct: 119 YKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVH 178
Query: 429 SEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488
+ +A ++ + V + E + + D V
Sbjct: 179 PAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPDNVR 238
Query: 489 LGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLK 548
L G + ++ +V +++ P A + W I +A +K
Sbjct: 239 LATGSLDNSV--IVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNE---TTIVSAGQDSNIK 293
Query: 549 LWQL 552
W +
Sbjct: 294 FWNV 297
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.4 bits (92), Expect = 0.001
Identities = 24/256 (9%), Positives = 59/256 (23%), Gaps = 9/256 (3%)
Query: 303 VLYGHNARVWDCCLT--DSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSL 359
V YGHN + + + +A + W S G ++ + I S
Sbjct: 7 VRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSK 66
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419
L + D V ++S + + +
Sbjct: 67 GDLFTVSWDDHLKVVPAGG----SGVDSSKAVANKLSSQPLGLAVSADGDIAVAACYKHI 122
Query: 420 EYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKY 479
LT Y ++ + + + + G + + + + +
Sbjct: 123 AIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGASVSEVKTIVHPAEI 182
Query: 480 PCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIF 539
+ + + V ++ W + +
Sbjct: 183 TSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTAKVACVSWSPD--NVRLA 240
Query: 540 TADPKGRLKLWQLCDP 555
T + +W + P
Sbjct: 241 TGSLDNSVIVWNMNKP 256
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 299 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.0 bits (91), Expect = 0.002
Identities = 41/318 (12%), Positives = 79/318 (24%), Gaps = 37/318 (11%)
Query: 18 GEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFIN 77
I+AL L S A + + +D+ G R F H + GI
Sbjct: 13 KAITALSSSADGKTLFS-----ADAEGHINSWDISTGISNRVFPDVHATMITGIKTTSKG 67
Query: 78 CTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFD 137
V G + V+ S + S +
Sbjct: 68 DLFTVSWDDHLKVVPAGG----------------------SGVDSSKAVANKLSSQPLGL 105
Query: 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIA 197
+ + S S + + D+ +
Sbjct: 106 AVSADGDIAVAACYKHIAIYSHGKLTEVPISYNSSCVALSNDKQFVAVGGQDSKVHVYKL 165
Query: 198 SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEG 257
SG +E+ E + ++ S + H
Sbjct: 166 SGASVSEVKTIVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFELAHTNSWTFHTA 225
Query: 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCC-- 315
+ + WS +L + S D S +W + + + + H +
Sbjct: 226 KVACVSWSPDNVRLATGSLDNSVIVW--------NMNKPSDHPIIIKGAHAMSSVNSVIW 277
Query: 316 LTDSFIITAGEDCTCRVW 333
L ++ I++AG+D + W
Sbjct: 278 LNETTIVSAGQDSNIKFW 295
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 53.3 bits (126), Expect = 1e-07
Identities = 34/321 (10%), Positives = 76/321 (23%), Gaps = 36/321 (11%)
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVR-AEYWKDSDSIEEVGSSVLYGHNARVW 312
H+ IF + S VS S D ++W+ + + D H+ V
Sbjct: 12 AHDADIFSVSAC--NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDVL 69
Query: 313 DCCLTDS----FIITAGEDCTCRVWG-SDGKQLKMIKEH---------IGRGIWRCL--- 355
D+ + T + + + K + W
Sbjct: 70 QAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWGA 129
Query: 356 --YDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIR 413
LS LV + +F F + + + +
Sbjct: 130 SNDRLLSHRLVATDVKGTTYIWKFHPF-----------ADESNSLTLNWSPTLELQGTVE 178
Query: 414 LTDSKSEYVRCLHLTSEDTLYIATNHG--YLYHTKLCDMDSVNWNKILQVSEGMPIICMD 471
+ S++ + ++ + N+G + ++ ++ I +
Sbjct: 179 SPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNSNSIRSVK 238
Query: 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCK 531
D +G + P S + + +
Sbjct: 239 FSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQASLGEFAHSSWVMSLSFN 298
Query: 532 SLGHRFIFTADPKGRLKLWQL 552
G G+L+ W +
Sbjct: 299 DSGETLCSAGW-DGKLRFWDV 318
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 39/368 (10%), Positives = 99/368 (26%), Gaps = 47/368 (12%)
Query: 18 GEISALCFVHLPSHLSSLPFLLA--GSGSQVLLYDLEAGTLIRPFQVFHG----IRLHGI 71
+ + + + L+A +L Y + + +
Sbjct: 61 SGLHHVDVLQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKH 120
Query: 72 SCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSL---VQSL 128
S + + VA + +++ + ++ L L V+S
Sbjct: 121 SFWALKWGASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGTVESP 180
Query: 129 PRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWG 188
S + V + +A G ++ ++++
Sbjct: 181 MTPSQFATSVDI----SERGLIATGFNNGTVQIS---------------ELSTLRPLYNF 221
Query: 189 DNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248
++ ++ S +I + + +A NS + + + L H++
Sbjct: 222 ESQHSMINNSNSIRSVKFSPQGSLLAIAHDSNSFGCITLYETEFGERIGSLSVPTHSSQA 281
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
H + + ++ G L S D R W+V+ + E + + L H
Sbjct: 282 SLGEFAHSSWVMSLSFNDSGETLCSAGWDGKLRFWDVK--------TKERI--TTLNMHC 331
Query: 309 ARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
+ + V+ + +G + L+ L
Sbjct: 332 DDIEIEEDILAVDEHGDSLAEPGVFDVK---------FLKKGWRSGMGADLNESLCCVCL 382
Query: 369 DSAIKVHQ 376
D +I+ +
Sbjct: 383 DRSIRWFR 390
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 44.5 bits (103), Expect = 7e-05
Identities = 12/86 (13%), Positives = 23/86 (26%), Gaps = 13/86 (15%)
Query: 302 SVLYGHNARVWDCCLTDSFIITAGEDCTCRVW-------------GSDGKQLKMIKEHIG 348
+ H+A ++ +SF ++ D +VW K H+
Sbjct: 8 NAGKAHDADIFSVSACNSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVD 67
Query: 349 RGIWRCLYDSLSSLLVTAGFDSAIKV 374
L+ T F +
Sbjct: 68 VLQAIERDAFELCLVATTSFSGDLLF 93
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 393 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.2 bits (92), Expect = 0.002
Identities = 20/236 (8%), Positives = 58/236 (24%), Gaps = 31/236 (13%)
Query: 132 SHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMK------ 185
+F V N D ++VWD ++
Sbjct: 14 DADIFSVSAC-----NSFTVSCSGDGYLKVWDNKLLDNENPKDKSYSHFVHKSGLHHVDV 68
Query: 186 ---LWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQ-- 240
+ D E +A+ + +++ +++ E + + + + L+
Sbjct: 69 LQAIERDAFELCLVATTSFSGDLLFYRITREDETKKVIFEKLDLLDSDMKKHSFWALKWG 128
Query: 241 -DQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299
+ +G+ + ++ + S++ + S +
Sbjct: 129 ASNDRLLSHRLVATDVKGTTYIWKFHPFADESNSLTLNWSPTLELQGT------------ 176
Query: 300 GSSVLYGHNARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
+ ++ I T + T ++ + E I
Sbjct: 177 -VESPMTPSQFATSVDISERGLIATGFNNGTVQISELSTLRPLYNFESQHSMINNS 231
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 49.8 bits (117), Expect = 1e-06
Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 13/81 (16%)
Query: 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDC 314
HE + ++++ CG VS D W + + ++ V C
Sbjct: 264 HESCVLSLKFAYCGKWFVSTGKDNLLNAW--------RTPYGASI---FQSKESSSVLSC 312
Query: 315 CLT--DSFIITAGEDCTCRVW 333
++ D +I+T D V+
Sbjct: 313 DISVDDKYIVTGSGDKKATVY 333
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 1e-04
Identities = 40/311 (12%), Positives = 74/311 (23%), Gaps = 50/311 (16%)
Query: 108 LSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167
P++ P + + +L V V + ++VWDIS+
Sbjct: 28 FPPDALIGPGIPRHARQINTL-NHGEVVCAVTI----SNPTRHVYTGGKGCVKVWDISHP 82
Query: 168 SIILEVHSPE--------RCLLYS----MKLWGDNLEALRIASGTIYNEIIVWKVDWEHV 215
V + R + G L I I ++
Sbjct: 83 GNKSPVSQLDCLNRDNYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAP 142
Query: 216 APLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS 275
A + + S H + + GH I+ S+ G+KL +
Sbjct: 143 ACYALAISPDSKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGG 202
Query: 276 DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL------------------- 316
D + R W++R S+ Y +
Sbjct: 203 LDNTVRSWDLREGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLH 262
Query: 317 -------------TDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLL 363
+ ++ G+D W + + + C +
Sbjct: 263 LHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASIFQSKE-SSSVLSCDISVDDKYI 321
Query: 364 VTAGFDSAIKV 374
VT D V
Sbjct: 322 VTGSGDKKATV 332
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.6 bits (93), Expect = 0.001
Identities = 10/67 (14%), Positives = 21/67 (31%), Gaps = 7/67 (10%)
Query: 221 SPEGNHAHGSSSD--FKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDR 278
+ G + D ++ S+ + S +V+ S D+
Sbjct: 274 AYCGKWFVSTGKDNLLNAWRTPYGA-----SIFQSKESSSVLSCDISVDDKYIVTGSGDK 328
Query: 279 SARIWEV 285
A ++EV
Sbjct: 329 KATVYEV 335
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 337 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.4 bits (90), Expect = 0.002
Identities = 31/310 (10%), Positives = 75/310 (24%), Gaps = 24/310 (7%)
Query: 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN 308
+ H + + S+ + + ++W++ K V +
Sbjct: 44 QINTLNHGEVVCAVTISNPTRHVYTGGKG-CVKVWDISHPGNK-----SPVSQLDCLNRD 97
Query: 309 ARVWDCCLT-DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367
+ C L D + G + + IK + C + ++
Sbjct: 98 NYIRSCKLLPDGCTLIVGGEASTLSIWDLAAPTPRIKAELTSSAPACYALA-----ISPD 152
Query: 368 FDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHL 427
L + ++F G T+ S + T VR L
Sbjct: 153 SKVCFSCCSDGNIAVWDLHNQTLVRQFQGHTDGASCIDISNDGTKLWTGGLDNTVRSWDL 212
Query: 428 TSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWV 487
L ++ C + + + + + +
Sbjct: 213 REGRQLQQHDFTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDKYQLHLHESCVLSLK 272
Query: 488 ALGDGK-----GNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTAD 542
GK G ++ F S+ + S+ ++I T
Sbjct: 273 FAYCGKWFVSTGKDNLLNAW-RTPYGASIFQSKESSSV------LSCDISVDDKYIVTGS 325
Query: 543 PKGRLKLWQL 552
+ ++++
Sbjct: 326 GDKKATVYEV 335
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 47.2 bits (110), Expect = 9e-06
Identities = 17/99 (17%), Positives = 29/99 (29%), Gaps = 10/99 (10%)
Query: 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT 317
I W+ +++ ++ I+E W L HN +V
Sbjct: 9 PISCHAWNKDRTQIAICPNNHEVHIYEKSGNKWV--------QVHELKEHNGQVTGVDWA 60
Query: 318 --DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
+ I+T G D VW G+ K +
Sbjct: 61 PDSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAAR 99
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 44.5 bits (103), Expect = 7e-05
Identities = 38/299 (12%), Positives = 84/299 (28%), Gaps = 18/299 (6%)
Query: 221 SPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSA 280
+ + ++ + + + V + L H G + ++W+ +++V+ DR+A
Sbjct: 16 NKDRTQIAICPNNHEVHIYEKSGNKWVQVHELKEHNGQVTGVDWAPDSNRIVTCGTDRNA 75
Query: 281 RIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQ 339
+W ++ WK + I + R + + C +D
Sbjct: 76 YVWTLKGRTWKPTLVILRINR---AARCVRWAPNEKKFAVGSGSRVISICYFEQENDWWV 132
Query: 340 LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTE 399
K IK+ I + + S LL D ++ S +
Sbjct: 133 CKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIF--------SAYIKEVEERPAPTPW 184
Query: 400 IFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKIL 459
+ + + V S + L + ++ L
Sbjct: 185 GSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDSTVCLADADKKMAVATLASETL 244
Query: 460 QVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSA 518
+ I L++ G D + L + G + P+ S +A
Sbjct: 245 PLLAVTFITESSLVA------AGHDCFPVLFTYDSAAGKLSFGGRLDVPKQSSQRGLTA 297
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} Length = 371 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Score = 40.2 bits (92), Expect = 0.002
Identities = 27/202 (13%), Positives = 62/202 (30%), Gaps = 17/202 (8%)
Query: 98 RVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDN 157
+ ++F + + + + S V + +A D+
Sbjct: 164 KCRIFSAYIKEVEERPAPTPWGSKMPFGELMFESSSSCGWVHGVCFSANGSRVAWVSHDS 223
Query: 158 SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAP 217
++ + D + + S LL + +L +A+G +++ D
Sbjct: 224 TVCLADADKKMAVATLASETLPLLAVTFITESSL----VAAGH-DCFPVLFTYDSAAGKL 278
Query: 218 LLNSPEGNH---AHGSSSDFKCFKLQDQQ-----HTAVNLFRLVGHEGSIFRIEWSSCG- 268
+ + + F+ D++ A H+ S+ +I S G
Sbjct: 279 SFGGRLDVPKQSSQRGLTARERFQNLDKKASSEGSAAAGAGLDSLHKNSVSQISVLSGGK 338
Query: 269 ---SKLVSVSDDRSARIWEVRA 287
S+ + D IW+VR+
Sbjct: 339 AKCSQFCTTGMDGGMSIWDVRS 360
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 46.8 bits (109), Expect = 1e-05
Identities = 14/104 (13%), Positives = 25/104 (24%), Gaps = 10/104 (9%)
Query: 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313
+ I I+ S L+ S D S +++ + V + +
Sbjct: 9 APKDYISDIKIIPSKSLLLITSWDGSLTVYKFD-------IQAKNVDLLQSLRYKHPLLC 61
Query: 314 CCL---TDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRC 354
C TD I G + + C
Sbjct: 62 CNFIDNTDLQIYVGTVQGEILKVDLIGSPSFQALTNNEANLGIC 105
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 342 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 42.9 bits (99), Expect = 2e-04
Identities = 20/229 (8%), Positives = 57/229 (24%), Gaps = 27/229 (11%)
Query: 113 QYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILE 172
P + + ++ + + L +G +++ ++ + +
Sbjct: 126 VIDPRNYGDGVIAVKNLNSNNTKVKNKIFTMDTNSSRLIVGMNNSQVQWFRLPLCEDDNG 185
Query: 173 VHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSS 232
+ E A +I + V D
Sbjct: 186 TIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFD------------------DQG 227
Query: 233 DFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKD 292
D + + + IE+S L + D W +
Sbjct: 228 DDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCW--------N 279
Query: 293 SDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLK 341
+ +++ + + V +D+ + A D T + + + ++
Sbjct: 280 LQTRKKI-KNFAKFNEDSVVKIACSDNILCLATSDDTFKTNAAIDQTIE 327
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} Length = 360 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Score = 45.6 bits (106), Expect = 3e-05
Identities = 10/174 (5%), Positives = 39/174 (22%), Gaps = 27/174 (15%)
Query: 133 HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH------------------ 174
+++L + D + EV
Sbjct: 176 TENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVLNFSFEVVSKPFVIPLIPGSPNPTKL 235
Query: 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEH---VAPLLNSPEGNHAHGSS 231
P + + +++ + + + ++ + G+
Sbjct: 236 VPRSMTSEAGEYDLNDMYKRSSPINVDPGDYRMIIPLESSILIYSVPVHGEFAAYYQGAP 295
Query: 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285
K + ++ + ++ + S+ ++ DD + +
Sbjct: 296 EKGVLLKYDVKTR------KVTEVKNNLTDLRLSADRKTVMVRKDDGKIYTFPL 343
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} Length = 346 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Score = 41.3 bits (95), Expect = 6e-04
Identities = 27/339 (7%), Positives = 63/339 (18%), Gaps = 33/339 (9%)
Query: 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
++ + + + D+ + T+ + + T V
Sbjct: 11 MIVTNYPNNLHVVDVASDTVYKSCVMPDKFGPGTAMMA---------PDNRTAYVLNNHY 61
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+ +L+ TC N + + + + +
Sbjct: 62 GDIYGIDLD------------TCKNTFHANLSSVPGEVGRSMYSFAISPDGKEVYATVNP 109
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216
LEV S L + + + V D +
Sbjct: 110 TQRLNDHYVVKPPRLEVFSTADGLEAKPVRTFPMPRQVYLMRAADDGSLYVAGPDIYKMD 169
Query: 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276
+ + + +
Sbjct: 170 VKTGKYTVALPLRNWNRKGYSAPDVLYFWPHQ-SPRHEFSMLYTIARFKDDKQDPATADL 228
Query: 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336
D + + G + D
Sbjct: 229 LYGYLSV--------DLKTGKTHTQEFADLTELYFTGLRSPKDPNQIYGVLNRLAKY--D 278
Query: 337 GKQLKMIKE-HIGRGIWRCLYDSLSSLLVTAGFDSAIKV 374
KQ K+IK ++ + +D L G + + V
Sbjct: 279 LKQRKLIKAANLDHTYYCVAFDKKGDKLYLGGTFNDLAV 317
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 287 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 41.1 bits (94), Expect = 6e-04
Identities = 11/78 (14%), Positives = 20/78 (25%), Gaps = 1/78 (1%)
Query: 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSC 267
+ S + + + L H+ + + W +
Sbjct: 210 AISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKRPMKIIKALNAHKDGVNNLLWET- 268
Query: 268 GSKLVSVSDDRSARIWEV 285
S LVS D + W V
Sbjct: 269 PSTLVSSGADACIKRWNV 286
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 40.7 bits (93), Expect = 9e-04
Identities = 35/300 (11%), Positives = 78/300 (26%), Gaps = 21/300 (7%)
Query: 38 LLAGSGSQVLLYDLEAGTLIRPFQVF-HGIRLHGISCNFINCTEGSVSTRVTFEVALFGE 96
+ +G+ V + + T + H + S + C G V V
Sbjct: 32 IQYCNGTSVYTVPVGSLTDTEIYTEHSHQTTVAKTSPSGYYCASGDVHGNVRIWDTTQTT 91
Query: 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156
+K F + F V + + G
Sbjct: 92 HILKTTIPVFSGPVKDISWDSESKR--------IAAVGEGRERFGHVFLFDTGTSNGNLT 143
Query: 157 NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216
R + + ++ ++ + G + + + +
Sbjct: 144 GQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSL 203
Query: 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSD 276
+G + D + + + V H GS+F + WS G+K+ S S
Sbjct: 204 FASTGGDGTIVLYNGVDGTKTGVFEDDS-----LKNVAHSGSVFGLTWSPDGTKIASASA 258
Query: 277 DRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSD 336
D++ +IW V + + V + T +++ + +
Sbjct: 259 DKTIKIWNVA-----TLKVEKTI--PVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 311 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Score = 39.1 bits (89), Expect = 0.003
Identities = 31/265 (11%), Positives = 64/265 (24%), Gaps = 15/265 (5%)
Query: 121 NLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCL 180
+L+ + SH A G ++R+WD + ++ IL+ P
Sbjct: 47 SLTDTEIYTEHSHQTTVAKT---SPSGYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG 103
Query: 181 LYS----------MKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230
+ G+ E ++
Sbjct: 104 PVKDISWDSESKRIAAVGEGRERFGHVFLFDTGTSNGNLTGQARAMNSVDFKPSRPFRII 163
Query: 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYW 290
S + H + + ++ GS S D + ++
Sbjct: 164 SGSDDNTVAIFEGPPFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK 223
Query: 291 KDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWG-SDGKQLKMIKEHIGR 349
+ + + G + I +A D T ++W + K K I
Sbjct: 224 TGVFEDDSLKNVAHSGSV-FGLTWSPDGTKIASASADKTIKIWNVATLKVEKTIPVGTRI 282
Query: 350 GIWRCLYDSLSSLLVTAGFDSAIKV 374
+ LV+ + I
Sbjct: 283 EDQQLGIIWTKQALVSISANGFINF 307
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 40.6 bits (93), Expect = 0.001
Identities = 26/314 (8%), Positives = 68/314 (21%), Gaps = 24/314 (7%)
Query: 252 LVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV 311
L GH S+ + +++ +DD+ R+++ + + L GH+ V
Sbjct: 8 LRGHMTSVITC-LQFEDNYVITGADDKMIRVYDSINKKFL----------LQLSGHDGGV 56
Query: 312 WDCCLT-DSFIITAGE--DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF 368
W +++ + + +VT
Sbjct: 57 WALKYAHGGILVSGSTDRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSR 116
Query: 369 DSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLT 428
D+ + V + T + + + ++
Sbjct: 117 DNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVS 176
Query: 429 SEDTLYI---ATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDD 485
+ + D + + MD G
Sbjct: 177 GSYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELM 236
Query: 486 WVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPK- 544
+ G + + + + + +Y +L F
Sbjct: 237 YTLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNI 296
Query: 545 ------GRLKLWQL 552
+ ++ L
Sbjct: 297 LVSGSENQFNIYNL 310
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 355 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.003
Identities = 41/311 (13%), Positives = 90/311 (28%), Gaps = 13/311 (4%)
Query: 302 SVLYGHNARVWDCC-LTDSFIITAGEDCTCRVW-GSDGKQLKMIKEHIGRGIWRCLYDSL 359
+ L GH V C D+++IT +D RV+ + K L + H G G+W L +
Sbjct: 6 TTLRGHMTSVITCLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVW-ALKYAH 63
Query: 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKS 419
+LV+ D ++V + E + T + + + +T S+
Sbjct: 64 GGILVSGSTDRTVRVWDIKKG------CCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRD 117
Query: 420 EYVRCLHLTSEDTLYIATNHGY---LYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNE 476
+ L E ++ ++HT + V + S +++ +
Sbjct: 118 NTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSG 177
Query: 477 PKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHR 536
I VA ++ SA ++ +
Sbjct: 178 SYDNTLIVWDVAQMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMY 237
Query: 537 FIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLF 596
+ L S+ S + + + S + + + + +
Sbjct: 238 TLQGHTALVGLLRLSDKFLVSAAADGSIRGWDANDYSRKFSYHHTNLSAITTFYVSDNIL 297
Query: 597 CGDLRGNLVLF 607
++
Sbjct: 298 VSGSENQFNIY 308
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 325 | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 39.1 bits (89), Expect = 0.003
Identities = 12/73 (16%), Positives = 22/73 (30%), Gaps = 11/73 (15%)
Query: 264 WSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSF 320
K +V D + R+W+V + + V L + +
Sbjct: 259 SWLDSQKFATVGADATIRVWDVT--------TSKCVQKWTLDKQQLGNQQVGVVATGNGR 310
Query: 321 IITAGEDCTCRVW 333
II+ D T +
Sbjct: 311 IISLSLDGTLNFY 323
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 1398 | |||
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1gxra_ | 337 | Groucho/tle1, C-terminal domain {Human (Homo sapie | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1erja_ | 388 | Tup1, C-terminal domain {Baker's yeast (Saccharomy | 100.0 | |
| d1nr0a1 | 311 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1vyhc1 | 317 | Platelet-activating factor acetylhydrolase IB subu | 100.0 | |
| d1k8kc_ | 371 | Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taur | 100.0 | |
| d2ovrb2 | 342 | F-box/WD repeat-containing protein 7, FBXW7 {Human | 100.0 | |
| d1nexb2 | 355 | Cdc4 propeller domain {Baker's yeast (Saccharomyce | 100.0 | |
| d1tbga_ | 340 | beta1-subunit of the signal-transducing G protein | 100.0 | |
| d1nr0a2 | 299 | Actin interacting protein 1 {Nematode (Caenorhabdi | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua1 | 325 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 100.0 | |
| d1sq9a_ | 393 | Antiviral protein Ski8 (Ski8p) {Baker's yeast (Sac | 100.0 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 100.0 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 100.0 | |
| d1p22a2 | 293 | F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom | 99.97 | |
| d1yfqa_ | 342 | Cell cycle arrest protein BUB3 {Baker's yeast (Sac | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.97 | |
| d1pgua2 | 287 | Actin interacting protein 1 {Baker's yeast (Saccha | 99.97 | |
| d1k32a3 | 360 | Tricorn protease domain 2 {Archaeon Thermoplasma a | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1hzua2 | 426 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.96 | |
| d1qksa2 | 432 | C-terminal (heme d1) domain of cytochrome cd1-nitr | 99.95 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.94 | |
| d1l0qa2 | 301 | Surface layer protein {Archaeon Methanosarcina maz | 99.93 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.91 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.9 | |
| d1pbyb_ | 337 | Quinohemoprotein amine dehydrogenase B chain {Para | 99.89 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.87 | |
| d1jmxb_ | 346 | Quinohemoprotein amine dehydrogenase B chain {Pseu | 99.85 | |
| d2madh_ | 373 | Methylamine dehydrogenase, H-chain {Gram negative | 99.83 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.82 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.81 | |
| d1ri6a_ | 333 | Putative isomerase YbhE {Escherichia coli [TaxId: | 99.81 | |
| d2bbkh_ | 355 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.73 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.66 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.63 | |
| d2bgra1 | 470 | Dipeptidyl peptidase IV/CD26, N-terminal domain {P | 99.58 | |
| d1mdah_ | 368 | Methylamine dehydrogenase, H-chain {Paracoccus den | 99.54 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.49 | |
| d1qnia2 | 441 | Nitrous oxide reductase, N-terminal domain {Pseudo | 99.39 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 99.03 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.94 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.9 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.85 | |
| d1q7fa_ | 279 | Brain tumor cg10719-pa {Fruit fly (Drosophila mela | 98.81 | |
| d1jofa_ | 365 | 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neu | 98.67 | |
| d2p4oa1 | 302 | Hypothetical protein All0351 homologue {Nostoc pun | 98.63 | |
| d1rwia_ | 260 | Serine/threonine-protein kinase PknD {Mycobacteriu | 98.57 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.49 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.49 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.44 | |
| d2hqsa1 | 269 | TolB, C-terminal domain {Escherichia coli [TaxId: | 98.44 | |
| d1pjxa_ | 314 | Diisopropylfluorophosphatase (phosphotriesterase, | 98.44 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 98.36 | |
| d1xfda1 | 465 | Dipeptidyl aminopeptidase-like protein 6, DPP6, N- | 98.33 | |
| d2dg1a1 | 319 | Lactonase Drp35 {Staphylococcus aureus [TaxId: 128 | 97.92 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 97.13 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.96 | |
| d2ghsa1 | 295 | Regucalcin {Agrobacterium tumefaciens [TaxId: 358] | 96.94 | |
| d1w6sa_ | 596 | Methanol dehydrogenase, heavy chain {Methylobacter | 94.55 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 94.54 | |
| d2ad6a1 | 571 | Methanol dehydrogenase, heavy chain {Methylophilus | 94.32 | |
| d1kv9a2 | 560 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 94.27 | |
| d1utca2 | 327 | Clathrin heavy-chain terminal domain {Rat (Rattus | 92.55 | |
| d1fwxa2 | 459 | Nitrous oxide reductase, N-terminal domain {Paraco | 92.21 | |
| d1k3ia3 | 387 | Galactose oxidase, central domain {Fungi (Fusarium | 92.19 | |
| d1k32a2 | 281 | Tricorn protease N-terminal domain {Archaeon Therm | 91.53 | |
| d1npea_ | 263 | Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | 90.33 | |
| d1kb0a2 | 573 | Quinoprotein alcohol dehydrogenase, N-terminal dom | 83.47 |
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.7e-41 Score=268.48 Aligned_cols=351 Identities=16% Similarity=0.221 Sum_probs=225.6
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCE
Q ss_conf 09999949969999914788999988886321111555314688768999998413899499999889909999957991
Q 000602 89 FEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSS 168 (1398)
Q Consensus 89 ~~la~~gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~ 168 (1398)
..+...+++...+|+..... .....+... .+|.+.|++++|+| +|++|++|+ |++|++||+.+++
T Consensus 30 ~~~~~~~~~~~~~~~~~~~~----------~~~~~l~~~-~~H~~~V~~l~fs~---dg~~lasg~-d~~i~iW~~~~~~ 94 (388)
T d1erja_ 30 DALKKQTNDYYILYNPALPR----------EIDVELHKS-LDHTSVVCCVKFSN---DGEYLATGC-NKTTQVYRVSDGS 94 (388)
T ss_dssp TTSEEECSSCEEEECTTSCC----------CEEEEEEEE-EECSSCCCEEEECT---TSSEEEEEC-BSCEEEEETTTCC
T ss_pred CCCCCCCCCCEEEECCCCCC----------CEEEEEEEE-CCCCCCEEEEEECC---CCCEEEEEE-CCEEEEEEECCCC
T ss_conf 32246889708986887776----------205410760-79999689999999---999999994-9948999813640
Q ss_pred EEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEE
Q ss_conf 99998348863189998623798885999997999099999246876666899998777898887620253135664057
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN 248 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~ 248 (1398)
.+..+..+..... +. ....
T Consensus 95 ~~~~~~~~~~~~~---------------------------~~----------------------------------~~~~ 113 (388)
T d1erja_ 95 LVARLSDDSAANK---------------------------DP----------------------------------ENLN 113 (388)
T ss_dssp EEEEECC-------------------------------------------------------------------------
T ss_pred EEEEECCCCCCCC---------------------------CC----------------------------------CCCC
T ss_conf 5766316654432---------------------------44----------------------------------3211
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEEC
Q ss_conf 999927668889999948999999997899099999578941388870376304874088447999991--998999958
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE 326 (1398)
Q Consensus 249 i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~ 326 (1398)
.....+|...|.+++|+|++++|++++.|+.|++|+...++. . ....+|...|.++.++ +..+++++.
T Consensus 114 ~~~~~~~~~~V~~l~~s~~~~~l~s~~~dg~v~i~~~~~~~~-----~-----~~~~~h~~~v~~~~~~~~~~~~~~~~~ 183 (388)
T d1erja_ 114 TSSSPSSDLYIRSVCFSPDGKFLATGAEDRLIRIWDIENRKI-----V-----MILQGHEQDIYSLDYFPSGDKLVSGSG 183 (388)
T ss_dssp -----CCCCBEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----E-----EEECCCSSCEEEEEECTTSSEEEEEET
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEECCCCCCCCCCCCCCCCC-----C-----CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 101467789889999889998012134441111211111111-----1-----111111111111011111111112221
Q ss_pred CCCEEEECC-CCCEEEEEECCCCCCEEEEEE-CCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEE
Q ss_conf 992999938-994689992024865799999-489999999982893999995988755324787641016873079965
Q 000602 327 DCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY-DSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIK 404 (1398)
Q Consensus 327 Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~-spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~ 404 (1398)
++.+++|+. ..........+.. ..++.+ .+++.+|++++.|+.|++|+.....
T Consensus 184 ~~~i~~~d~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~d~~i~i~~~~~~~----------------------- 238 (388)
T d1erja_ 184 DRTVRIWDLRTGQCSLTLSIEDG--VTTVAVSPGDGKYIAAGSLDRAVRVWDSETGF----------------------- 238 (388)
T ss_dssp TSEEEEEETTTTEEEEEEECSSC--EEEEEECSTTCCEEEEEETTSCEEEEETTTCC-----------------------
T ss_pred CEEEEEEECCCCCCCCCCCCCCC--CCCCCCCCCCCCEEEEECCCCEEEEEECCCCC-----------------------
T ss_conf 01565410111111000012454--42112368878758997389819996345573-----------------------
Q ss_pred ECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 27975423411678974799999119909999908938999950388850489785248963999850689998868999
Q 000602 405 IPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGID 484 (1398)
Q Consensus 405 ~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~ 484 (1398)
.+..+ ... . ....+ +..++.++.+ .+++
T Consensus 239 ----------------~~~~~--~~~---------------------~----~~~~~-h~~~v~~l~~--------s~~~ 266 (388)
T d1erja_ 239 ----------------LVERL--DSE---------------------N----ESGTG-HKDSVYSVVF--------TRDG 266 (388)
T ss_dssp ----------------EEEEE--C-------------------------------CC-CSSCEEEEEE--------CTTS
T ss_pred ----------------CCEEE--CCC---------------------C----CCCCC-CCCCEEEEEE--------CCCC
T ss_conf ----------------00010--244---------------------3----33457-7898789999--------7999
Q ss_pred CEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCC
Q ss_conf 69999928997999997178546511356664047534166899975199929999818993999956899986432367
Q 000602 485 DWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESS 564 (1398)
Q Consensus 485 ~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~ 564 (1398)
.++++++.||.|++|++.......... .+ ..+...
T Consensus 267 ~~l~s~~~d~~i~iwd~~~~~~~~~~~--------------------~~---------~~~~~~---------------- 301 (388)
T d1erja_ 267 QSVVSGSLDRSVKLWNLQNANNKSDSK--------------------TP---------NSGTCE---------------- 301 (388)
T ss_dssp SEEEEEETTSEEEEEEC--------------------------------------------CEE----------------
T ss_pred CEEEEEECCCCEEEEECCCCCCCCCCC--------------------CC---------CCCCEE----------------
T ss_conf 999999789928987515776432101--------------------34---------442001----------------
Q ss_pred CCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEE
Q ss_conf 64202111111134698189999532998899961788199998797433564544301105630001345764489999
Q 000602 565 KTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLS 644 (1398)
Q Consensus 565 ~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~ 644 (1398)
.. ...|...|++++|+|++++|++|+.||+|++||+.++ .+...++ .|. +.|+++.
T Consensus 302 --------~~-~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~-------------~~~~~l~-~H~-~~V~~~~ 357 (388)
T d1erja_ 302 --------VT-YIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSG-------------NPLLMLQ-GHR-NSVISVA 357 (388)
T ss_dssp --------EE-EECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTC-------------CEEEEEE-CCS-SCEEEEE
T ss_pred --------EE-CCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCC-------------CEEEEEE-CCC-CCEEEEE
T ss_conf --------10-1245532789998899999999969897999999999-------------6999996-889-9789999
Q ss_pred EEE---ECCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 974---089830999972896399999946
Q 000602 645 VAK---LRSNQTEIRSTGGDGCICYLEYDK 671 (1398)
Q Consensus 645 ~~~---~~~~~~~l~S~g~DG~i~iw~i~~ 671 (1398)
+.. +.+++.+|+|++.||.|++|+++.
T Consensus 358 ~~~~~~~spd~~~l~s~s~Dg~I~iW~~~k 387 (388)
T d1erja_ 358 VANGSSLGPEYNVFATGSGDCKARIWKYKK 387 (388)
T ss_dssp ECSSCTTCTTCEEEEEEETTSEEEEEEEEE
T ss_pred EECCCCCCCCCCEEEEEECCCEEEEEEEEE
T ss_conf 846742589999999991899799976214
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.4e-41 Score=265.41 Aligned_cols=110 Identities=16% Similarity=0.232 Sum_probs=43.0
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEE
Q ss_conf 668889999948999999997899099999578941388870376304874088447999991--998999958992999
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRV 332 (1398)
Q Consensus 255 H~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~i 332 (1398)
|...|.+++|+|++.++++++.|+.+++|++..... .....|...|.+++|+ +++|++++.|+.|++
T Consensus 223 ~~~~i~~l~~~~~~~~l~~~~~d~~i~i~d~~~~~~-----------~~~~~~~~~i~~v~~s~~g~~l~s~s~Dg~i~i 291 (337)
T d1gxra_ 223 FTSQIFSLGYCPTGEWLAVGMESSNVEVLHVNKPDK-----------YQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNA 291 (337)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTSSCE-----------EEECCCSSCEEEEEECTTSSEEEEEETTSEEEE
T ss_pred CCCCEEEEEECCCCCCCCEECCCCCCCCCCCCCCCC-----------CCCCCCCCCCCEEEECCCCCEEEEEECCCEEEE
T ss_conf 666157999715303000000256421111111110-----------000124565416999899999999948996999
Q ss_pred ECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 938-994689992024865799999489999999982893999995
Q 000602 333 WGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 333 Wd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
||. +++.+..+. |.. .|++++|+|++++|++++.||.|++|++
T Consensus 292 wd~~~~~~~~~~~-~~~-~v~~~~~s~d~~~l~t~s~D~~I~vWdl 335 (337)
T d1gxra_ 292 WRTPYGASIFQSK-ESS-SVLSCDISVDDKYIVTGSGDKKATVYEV 335 (337)
T ss_dssp EETTTCCEEEEEE-CSS-CEEEEEECTTSCEEEEEETTSCEEEEEE
T ss_pred EECCCCCEEEECC-CCC-CEEEEEEECCCCEEEEEECCCEEEEEEE
T ss_conf 9899997999926-999-8799999279999999908996999977
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=5.3e-40 Score=259.26 Aligned_cols=277 Identities=19% Similarity=0.351 Sum_probs=184.7
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 036349999972189889988999980-8919999889993887998660834899997103464589875210099999
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|++|+|+ |+ +++|++|+ |++|+|||+.+++++.++..|.. .|.+++|+ |++ .+++..
T Consensus 16 H~~~I~~l~~s--p~----~~~l~s~s~Dg~i~iWd~~~~~~~~~~~~h~~-~V~~~~~~-------~~~----~~~~~~ 77 (317)
T d1vyhc1 16 HRSPVTRVIFH--PV----FSVMVSASEDATIKVWDYETGDFERTLKGHTD-SVQDISFD-------HSG----KLLASC 77 (317)
T ss_dssp CSSCEEEEEEC--SS----SSEEEEEESSSCEEEEETTTCCCCEEECCCSS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEEE-------CCC----CCCCCC
T ss_conf 88876899993--89----89999993899299998999979999957888-67777630-------111----101111
Q ss_pred -CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf -4996999991478899998888632111155531468876899999841389949999988990999995799199998
Q 000602 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 -gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
.++.+.+|+... .+....+.+|...+.++.|+| ++..+++++.|+.+++|++.+++....+
T Consensus 78 ~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 139 (317)
T d1vyhc1 78 SADMTIKLWDFQG---------------FECIRTMHGHDHNVSSVSIMP---NGDHIVSASRDKTIKMWEVQTGYCVKTF 139 (317)
T ss_dssp ETTSCCCEEETTS---------------SCEEECCCCCSSCEEEEEECS---SSSEEEEEETTSEEEEEETTTCCEEEEE
T ss_pred CCCCCCCCCCCCC---------------CCCCCCCCCCCCCCEEEECCC---CCCEEEEECCCCCEEEEECCCCEEEEEE
T ss_conf 1111101110011---------------111111000000000000169---9855776526752357511443034687
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 34886318999862379888599999799909999924687666689999877789888762025313566405799992
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~ 253 (1398)
..+.. .+.++.+ ++++.++++++.|+.|++|+.. .......+.
T Consensus 140 ~~~~~-~~~~~~~---~~~~~~l~~~~~d~~v~~~~~~---------------------------------~~~~~~~~~ 182 (317)
T d1vyhc1 140 TGHRE-WVRMVRP---NQDGTLIASCSNDQTVRVWVVA---------------------------------TKECKAELR 182 (317)
T ss_dssp ECCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------------------------TCCEEEEEC
T ss_pred CCCCC-CCEEEEC---CCCCCEEEEEECCCEEEEEEEC---------------------------------CCEEEEEEE
T ss_conf 16777-6300001---6679999999279829997512---------------------------------540347882
Q ss_pred CCCCCEEEEEECCCC--------------------CEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEE
Q ss_conf 766888999994899--------------------999999789909999957894138887037630487408844799
Q 000602 254 GHEGSIFRIEWSSCG--------------------SKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWD 313 (1398)
Q Consensus 254 gH~~~I~~iafspdg--------------------~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~ 313 (1398)
+|...+.++.|+|+. .++++++.|+.|++|++.++.. + ..+.+|...|.+
T Consensus 183 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~~~~~~~~-----~-----~~~~~~~~~v~~ 252 (317)
T d1vyhc1 183 EHRHVVECISWAPESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVSTGMC-----L-----MTLVGHDNWVRG 252 (317)
T ss_dssp CCSSCEEEEEECCSCGGGGGGGCCSCC-------CCEEEEEETTSEEEEEETTTTEE-----E-----EEEECCSSCEEE
T ss_pred CCCCCCEEEEEEECCCCCEEECCCCCEEEEECCCCCEEEECCCCCEEEEEECCCCCE-----E-----EEEECCCCCEEE
T ss_conf 477873379986325641110345630343025886147516997899988899968-----8-----999688998799
Q ss_pred EEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9991--998999958992999938-99468999202486579999948999999998289399999
Q 000602 314 CCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 314 i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwd 376 (1398)
++++ +++|++++.||.|++||+ +++++..+.+|.+ +|++++|+|++.+|++|+.||+|++||
T Consensus 253 ~~~~~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~s~s~Dg~i~iWd 317 (317)
T d1vyhc1 253 VLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEH-FVTSLDFHKTAPYVVTGSVDQTVKVWE 317 (317)
T ss_dssp EEECSSSSCEEEEETTTEEEEECCTTSCCCEEEECCSS-CEEEEEECSSSSCEEEEETTSEEEEEC
T ss_pred EEECCCCCEEEEEECCCEEEEEECCCCCEEEEECCCCC-CEEEEEECCCCCEEEEEECCCEEEEEC
T ss_conf 99879999999997989499999999919999928999-889999949999999992899499829
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.1e-39 Score=257.29 Aligned_cols=297 Identities=13% Similarity=0.062 Sum_probs=239.8
Q ss_pred EEEEECCCCEECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCC
Q ss_conf 99995786700363499999721898899889999808919999889993887998660834899997103464589875
Q 000602 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVST 85 (1398)
Q Consensus 6 v~iWdl~~~~h~~~Vtaiafs~~pd~~~~g~lLaaG~dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~ 85 (1398)
..++-..+..+.+.+..++++ |+ +..|+.+.++.|.+||+.++.....+.+|.. .|.+++|+ |++
T Consensus 6 ~~~~~~~p~~~r~~~~~~a~~--~~----g~~l~~~~~~~v~i~~~~~~~~~~~~~~H~~-~v~~~~~s-------p~g- 70 (311)
T d1nr0a1 6 TALFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG- 70 (311)
T ss_dssp EEEECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS-
T ss_pred CCCCCCCCCCCCCCEEEEEEC--CC----CCEEEEEECCEEEEEECCCCCEEEEECCCCC-CEEEEEEE-------CCC-
T ss_conf 350158987778875999996--99----8999999699999999999966179747888-88999994-------899-
Q ss_pred CCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEE
Q ss_conf 2100999994-996999991478899998888632111155531468876899999841389949999988--9909999
Q 000602 86 RVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVW 162 (1398)
Q Consensus 86 ~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~--Dg~I~iW 162 (1398)
.+|++++ |++|++|++.... ......+.+|...|.+++|+| ++.+|++++. +..+++|
T Consensus 71 ---~~latg~~dg~i~iwd~~~~~-------------~~~~~~~~~~~~~v~~v~~s~---d~~~l~~~~~~~~~~~~v~ 131 (311)
T d1nr0a1 71 ---YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVF 131 (311)
T ss_dssp ---SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEE
T ss_pred ---CEEECCCCCCEEEEEEEECCC-------------CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCCCCC
T ss_conf ---967225567367466310111-------------100001343357543323331---1100011112211111111
Q ss_pred ECCCCEEEEEECCCCCCEEEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECC
Q ss_conf 95799199998348863189998623798885-99999799909999924687666689999877789888762025313
Q 000602 163 DISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQD 241 (1398)
Q Consensus 163 dl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~-~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~ 241 (1398)
++.+++...++..+.. .+.++++ +|++. .+++|+.|+.|++|+.+
T Consensus 132 ~~~~~~~~~~l~~h~~-~v~~v~~---~~~~~~~l~sgs~d~~i~i~d~~------------------------------ 177 (311)
T d1nr0a1 132 LFDTGTSNGNLTGQAR-AMNSVDF---KPSRPFRIISGSDDNTVAIFEGP------------------------------ 177 (311)
T ss_dssp ETTTCCBCBCCCCCSS-CEEEEEE---CSSSSCEEEEEETTSCEEEEETT------------------------------
T ss_pred CCCCCCCCCCCCCCCC-CCCCCCC---CCCCEEEECCCCCCCCCCCCCCC------------------------------
T ss_conf 1111111111111111-1111111---21110120001122111111111------------------------------
Q ss_pred CCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEE--EEEECCCCCEEEEEEC--
Q ss_conf 566405799992766888999994899999999789909999957894138887037630--4874088447999991--
Q 000602 242 QQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT-- 317 (1398)
Q Consensus 242 ~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~--~~~~gh~~~V~~i~~s-- 317 (1398)
..+....+.+|...|.++.|+|+++++++++.|+.+++|+..++.. ...+.. ....+|...|.+++|+
T Consensus 178 ---~~~~~~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~-----~~~~~~~~~~~~~h~~~V~~~~~s~~ 249 (311)
T d1nr0a1 178 ---PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWSPD 249 (311)
T ss_dssp ---TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEECTT
T ss_pred ---CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf ---1111111111111111123476422121111111110001244641-----12221111111002465321024788
Q ss_pred CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 998999958992999938-9946899920248657999994899999999828939999959
Q 000602 318 DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 318 ~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
+++|++++.|++|++||+ +++++.++..|.......+.+.+++..|++++.||.|++||++
T Consensus 250 ~~~l~tgs~Dg~v~iwd~~t~~~~~~l~~~~~~~~~~~~~~~~~~~l~s~s~dG~i~~wd~d 311 (311)
T d1nr0a1 250 GTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPE 311 (311)
T ss_dssp SSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEECSSCEEEEETTCCEEEEETT
T ss_pred CCEEEEEECCCEEEEEECCCCCEEEEEECCCCCCCEEEEEEECCCEEEEEECCCEEEEEECC
T ss_conf 99999993799699999999969999979998633299999519999999899979999588
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3.2e-38 Score=248.24 Aligned_cols=112 Identities=17% Similarity=0.226 Sum_probs=57.1
Q ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEEC
Q ss_conf 8889999948999999997899099999578941388870376304874088447999991--99899995899299993
Q 000602 257 GSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWG 334 (1398)
Q Consensus 257 ~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd 334 (1398)
.+|++++|+|++++|++++.|+.|++|+...++. ..+ ..+.+|...|.+++|+ +++|++++.|+++++|+
T Consensus 8 ~pIt~~~~s~dg~~la~~~~~~~i~iw~~~~~~~------~~~--~~l~gH~~~V~~l~fsp~~~~l~s~s~D~~i~vWd 79 (371)
T d1k8kc_ 8 EPISCHAWNKDRTQIAICPNNHEVHIYEKSGNKW------VQV--HELKEHNGQVTGVDWAPDSNRIVTCGTDRNAYVWT 79 (371)
T ss_dssp SCCCEEEECTTSSEEEEECSSSEEEEEEEETTEE------EEE--EEEECCSSCEEEEEEETTTTEEEEEETTSCEEEEE
T ss_pred CCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE------EEE--EEECCCCCCEEEEEECCCCCEEEEEECCCEEEEEE
T ss_conf 8838999989999999994889899998889978------999--99558899888999979999999997999399986
Q ss_pred C-CCCEE--EEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 8-99468--9992024865799999489999999982893999995
Q 000602 335 S-DGKQL--KMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 335 ~-~g~~l--~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
+ ++... ..+..|.. .|++++|+|+++++++++.|+.+++|++
T Consensus 80 ~~~~~~~~~~~~~~~~~-~v~~i~~~p~~~~l~~~s~d~~i~i~~~ 124 (371)
T d1k8kc_ 80 LKGRTWKPTLVILRINR-AARCVRWAPNEKKFAVGSGSRVISICYF 124 (371)
T ss_dssp EETTEEEEEEECCCCSS-CEEEEEECTTSSEEEEEETTSSEEEEEE
T ss_pred ECCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCEEECCCCCCEEEEE
T ss_conf 20332110012232211-0001111111211000002576302544
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=1.2e-37 Score=244.73 Aligned_cols=282 Identities=16% Similarity=0.248 Sum_probs=233.1
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 036349999972189889988999980-8919999889993887998660834899997103464589875210099999
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|++++|+ |+ +++|++|+ |++|+|||+.+++.+..+..|.. .|.+++|+ |++ .+++++
T Consensus 54 H~~~I~~l~~s--~~----~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~v~~~-------~~~----~~l~~~ 115 (340)
T d1tbga_ 54 HLAKIYAMHWG--TD----SRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAYA-------PSG----NYVACG 115 (340)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTTEEEEEETTTTEEEEEEECSCS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCCEEEEECCCCEEEEEEECCCC-CEEEEEEE-------CCC----EEEEEE
T ss_conf 78988899998--99----99999997899555631021025799724653-37756760-------121----144310
Q ss_pred -CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf -4996999991478899998888632111155531468876899999841389949999988990999995799199998
Q 000602 95 -GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 -gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
.++.+++|+...... .......+.+|........... ...+.....+.....+...........
T Consensus 116 ~~d~~i~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (340)
T d1tbga_ 116 GLDNICSIYNLKTREG-----------NVRVSRELAGHTGYLSCCRFLD----DNQIVTSSGDTTCALWDIETGQQTTTF 180 (340)
T ss_dssp ETTCCEEEEESSSSCS-----------CCCEEEEECCCSSCEEEEEEEE----TTEEEEEETTTEEEEEETTTTEEEEEE
T ss_pred CCCCEEECCCCCCCCC-----------CCCCCEECCCCCCCCCCCCCCC----CCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 1332010133222212-----------2211100135421101111111----111111124454320012322111112
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 34886318999862379888599999799909999924687666689999877789888762025313566405799992
Q 000602 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~ 253 (1398)
...... +..... .+...++++|+.|+.|++||+. .++++..+.
T Consensus 181 ~~~~~~-~~~~~~---~~~~~~~~~~~~d~~v~i~d~~---------------------------------~~~~~~~~~ 223 (340)
T d1tbga_ 181 TGHTGD-VMSLSL---APDTRLFVSGACDASAKLWDVR---------------------------------EGMCRQTFT 223 (340)
T ss_dssp ECCSSC-EEEEEE---CTTSSEEEEEETTTEEEEEETT---------------------------------TTEEEEEEC
T ss_pred CCCCEE-EEEECC---CCCCCEEEEEECCCEEEEEECC---------------------------------CCCEEEEEE
T ss_conf 331015-763001---2442126876057369999999---------------------------------994889995
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 7668889999948999999997899099999578941388870376304874088447999991--99899995899299
Q 000602 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 254 gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~ 331 (1398)
+|...|.+++|+|++.+|++++.|+.+++|++..... ... .....+...+.+++|+ +.+|++++.||.|+
T Consensus 224 ~h~~~i~~v~~~p~~~~l~s~s~d~~i~~~~~~~~~~-----~~~---~~~~~~~~~i~~~~~s~~~~~l~~g~~dg~i~ 295 (340)
T d1tbga_ 224 GHESDINAICFFPNGNAFATGSDDATCRLFDLRADQE-----LMT---YSHDNIICGITSVSFSKSGRLLLAGYDDFNCN 295 (340)
T ss_dssp CCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EEE---ECCTTCCSCEEEEEECSSSCEEEEEETTSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEEECCCCC-----CCC---CCCCCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 7889858999979989999996999699975212211-----111---11224457458999989999999997979899
Q ss_pred EECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEE
Q ss_conf 9938-99468999202486579999948999999998289399999
Q 000602 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQ 376 (1398)
Q Consensus 332 iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwd 376 (1398)
+||+ +++.+..+.+|.+ +|++++|+|++.+|++|+.||.|++||
T Consensus 296 iwd~~~~~~~~~~~~H~~-~V~~l~~s~d~~~l~s~s~Dg~v~iWd 340 (340)
T d1tbga_ 296 VWDALKADRAGVLAGHDN-RVSCLGVTDDGMAVATGSWDSFLKIWN 340 (340)
T ss_dssp EEETTTCCEEEEECCCSS-CEEEEEECTTSSCEEEEETTSCEEEEC
T ss_pred EEECCCCCEEEEECCCCC-CEEEEEEECCCCEEEEECCCCEEEEEC
T ss_conf 999999939899848999-789999908999999990699799859
|
| >d1gxra_ b.69.4.1 (A:) Groucho/tle1, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Groucho/tle1, C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=7.6e-37 Score=239.75 Aligned_cols=30 Identities=27% Similarity=0.460 Sum_probs=11.4
Q ss_pred CCCCEEEEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 8876899999841389949999988990999995
Q 000602 131 LSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDI 164 (1398)
Q Consensus 131 h~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl 164 (1398)
|...|++++|+| ++++|++|+ |+.|+|||+
T Consensus 50 H~~~V~~v~fs~---~g~~latg~-dg~V~iWd~ 79 (337)
T d1gxra_ 50 HGEVVCAVTISN---PTRHVYTGG-KGCVKVWDI 79 (337)
T ss_dssp CSSCCCEEEECS---SSSEEEEEC-BSEEEEEET
T ss_pred CCCCEEEEEECC---CCCEEEEEE-CCEEEEEEC
T ss_conf 999289999989---999999997-998899773
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-37 Score=241.95 Aligned_cols=118 Identities=19% Similarity=0.338 Sum_probs=68.1
Q ss_pred EEEEECCCCCE-EEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC-CCEEEEEEC
Q ss_conf 99992766888-9999948999999997899099999578941388870376304874088447999991-998999958
Q 000602 249 LFRLVGHEGSI-FRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-DSFIITAGE 326 (1398)
Q Consensus 249 i~~l~gH~~~I-~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s-~~~lvsgs~ 326 (1398)
..+++||...| .+++| ++++|+||+.|++|++||+.+++. + ..+.+|...|++++|+ +++|++++.
T Consensus 5 ~~tL~GH~~~vitc~~~--~~~~l~tgs~Dg~i~vWd~~~~~~-----~-----~~l~~H~~~V~~l~~s~~~~l~s~s~ 72 (355)
T d1nexb2 5 RTTLRGHMTSVITCLQF--EDNYVITGADDKMIRVYDSINKKF-----L-----LQLSGHDGGVWALKYAHGGILVSGST 72 (355)
T ss_dssp EEEEECCSSSCEEEEEE--ETTEEEEEETTTEEEEEETTTTEE-----E-----EEEECCSSCEEEEEEETTTEEEEEET
T ss_pred CEEECCCCCCCEEEEEE--CCCEEEEEECCCEEEEEECCCCCE-----E-----EEEECCCCCEEEEEECCCCEEEEEEC
T ss_conf 58889837886999998--899999991899099998999939-----9-----99978999889999869999999964
Q ss_pred CCCEEEECC-CCCEEEEEECCCC-CCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 992999938-9946899920248-657999994899999999828939999959
Q 000602 327 DCTCRVWGS-DGKQLKMIKEHIG-RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 327 Dg~i~iWd~-~g~~l~~l~~h~~-~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
|+++++|+. ..+.......... .......+.+++.++++++.|+.|++|++.
T Consensus 73 D~~i~iw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~iw~~~ 126 (355)
T d1nexb2 73 DRTVRVWDIKKGCCTHVFEGHNSTVRCLDIVEYKNIKYIVTGSRDNTLHVWKLP 126 (355)
T ss_dssp TCCEEEEETTTTEEEEEECCCSSCEEEEEEEEETTEEEEEEEETTSEEEEEECC
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECC
T ss_conf 524432111111111111001111111111111232204554388868999856
|
| >d1erja_ b.69.4.1 (A:) Tup1, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Tup1, C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1e-35 Score=232.80 Aligned_cols=308 Identities=15% Similarity=0.288 Sum_probs=184.9
Q ss_pred CCCEEEEECCCC-----------EECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEE--------
Q ss_conf 974999957867-----------0036349999972189889988999980891999988999388799866--------
Q 000602 3 KKDLSEWRLDVG-----------QYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVF-------- 63 (1398)
Q Consensus 3 D~tv~iWdl~~~-----------~h~~~Vtaiafs~~pd~~~~g~lLaaG~dg~I~Iwd~~tg~~i~~~~~~-------- 63 (1398)
++...+|+.... .|.++|+||+|+ || |++||+|+|+.|+|||+.+++.+..+..+
T Consensus 37 ~~~~~~~~~~~~~~~~~~l~~~~~H~~~V~~l~fs--~d----g~~lasg~d~~i~iW~~~~~~~~~~~~~~~~~~~~~~ 110 (388)
T d1erja_ 37 NDYYILYNPALPREIDVELHKSLDHTSVVCCVKFS--ND----GEYLATGCNKTTQVYRVSDGSLVARLSDDSAANKDPE 110 (388)
T ss_dssp SSCEEEECTTSCCCEEEEEEEEEECSSCCCEEEEC--TT----SSEEEEECBSCEEEEETTTCCEEEEECC---------
T ss_pred CCCEEEECCCCCCCEEEEEEEECCCCCCEEEEEEC--CC----CCEEEEEECCEEEEEEECCCCEEEEECCCCCCCCCCC
T ss_conf 97089868877762054107607999968999999--99----9999999499489998136405766316654432443
Q ss_pred ---------ECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf ---------08348999971034645898752100999994-99699999147889999888863211115553146887
Q 000602 64 ---------HGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1398)
Q Consensus 64 ---------~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~ 133 (1398)
+...|.+++|+ |++ .+|++++ |+.|++|+... .+....+.+|..
T Consensus 111 ~~~~~~~~~~~~~V~~l~~s-------~~~----~~l~s~~~dg~v~i~~~~~---------------~~~~~~~~~h~~ 164 (388)
T d1erja_ 111 NLNTSSSPSSDLYIRSVCFS-------PDG----KFLATGAEDRLIRIWDIEN---------------RKIVMILQGHEQ 164 (388)
T ss_dssp --------CCCCBEEEEEEC-------TTS----SEEEEEETTSCEEEEETTT---------------TEEEEEECCCSS
T ss_pred CCCCCCCCCCCCCEEEEEEC-------CCC----CCCEECCCCCCCCCCCCCC---------------CCCCCCCCCCCC
T ss_conf 21110146778988999988-------999----8012134441111211111---------------111111111111
Q ss_pred CEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 68999998413899499999889909999957991999983488631899986237988859999979990999992468
Q 000602 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~ 213 (1398)
.|.++.|++ ++..+++++.++.+++||..+.........+... ..+.++ ..++.++++++.|+.|++|+....
T Consensus 165 ~v~~~~~~~---~~~~~~~~~~~~~i~~~d~~~~~~~~~~~~~~~~--~~~~~~--~~~~~~l~~~~~d~~i~i~~~~~~ 237 (388)
T d1erja_ 165 DIYSLDYFP---SGDKLVSGSGDRTVRIWDLRTGQCSLTLSIEDGV--TTVAVS--PGDGKYIAAGSLDRAVRVWDSETG 237 (388)
T ss_dssp CEEEEEECT---TSSEEEEEETTSEEEEEETTTTEEEEEEECSSCE--EEEEEC--STTCCEEEEEETTSCEEEEETTTC
T ss_pred CCCCCCCCC---CCCCCCCCCCCEEEEEEECCCCCCCCCCCCCCCC--CCCCCC--CCCCCEEEEECCCCEEEEEECCCC
T ss_conf 111101111---1111112221015654101111110000124544--211236--887875899738981999634557
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 76666899998777898887620253135664057999927668889999948999999997899099999578941388
Q 000602 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~ 293 (1398)
..... -........+|.+.|.+++|+|++++|++++.|+.|++|++........
T Consensus 238 ~~~~~--------------------------~~~~~~~~~~h~~~v~~l~~s~~~~~l~s~~~d~~i~iwd~~~~~~~~~ 291 (388)
T d1erja_ 238 FLVER--------------------------LDSENESGTGHKDSVYSVVFTRDGQSVVSGSLDRSVKLWNLQNANNKSD 291 (388)
T ss_dssp CEEEE--------------------------EC------CCCSSCEEEEEECTTSSEEEEEETTSEEEEEEC--------
T ss_pred CCCEE--------------------------ECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCC
T ss_conf 30001--------------------------0244333457789878999979999999997899289875157764321
Q ss_pred CC----CEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEE------CCCC
Q ss_conf 87----0376304874088447999991--998999958992999938-994689992024865799999------4899
Q 000602 294 DS----IEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLY------DSLS 360 (1398)
Q Consensus 294 ~~----~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~------spdg 360 (1398)
.. .... .....|...|.+++|+ +++|++++.||.|++||+ +++++.++.+|.+ .|+++++ +|++
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~v~~~~~s~~~~~l~sg~~dg~i~vwd~~~~~~~~~l~~H~~-~V~~~~~~~~~~~spd~ 368 (388)
T d1erja_ 292 SKTPNSGTCE--VTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWDKKSGNPLLMLQGHRN-SVISVAVANGSSLGPEY 368 (388)
T ss_dssp -------CEE--EEEECCSSCEEEEEECGGGCEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSSCTTCTTC
T ss_pred CCCCCCCCEE--EECCCCCCEEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEEECCCCCCCCC
T ss_conf 0134442001--10124553278999889999999996989799999999969999968899-78999984674258999
Q ss_pred CEEEEEECCCCEEEEECC
Q ss_conf 999999828939999959
Q 000602 361 SLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 361 ~~lvtgg~Dg~I~iwdl~ 378 (1398)
.+|+||+.||+|++|+++
T Consensus 369 ~~l~s~s~Dg~I~iW~~~ 386 (388)
T d1erja_ 369 NVFATGSGDCKARIWKYK 386 (388)
T ss_dssp EEEEEEETTSEEEEEEEE
T ss_pred CEEEEEECCCEEEEEEEE
T ss_conf 999999189979997621
|
| >d1nr0a1 b.69.4.1 (A:2-312) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=1.5e-36 Score=237.98 Aligned_cols=234 Identities=17% Similarity=0.186 Sum_probs=118.7
Q ss_pred CEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCC
Q ss_conf 48999971034645898752100999994996999991478899998888632111155531468876899999841389
Q 000602 67 RLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNG 146 (1398)
Q Consensus 67 ~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~d 146 (1398)
....++++ |++ ..++.+.++.+.+|+++. ....+.+.+|.+.|++++|+| +
T Consensus 19 ~~~~~a~~-------~~g----~~l~~~~~~~v~i~~~~~---------------~~~~~~~~~H~~~v~~~~~sp---~ 69 (311)
T d1nr0a1 19 TAVVLGNT-------PAG----DKIQYCNGTSVYTVPVGS---------------LTDTEIYTEHSHQTTVAKTSP---S 69 (311)
T ss_dssp CCCCCEEC-------TTS----SEEEEEETTEEEEEETTC---------------SSCCEEECCCSSCEEEEEECT---T
T ss_pred CEEEEEEC-------CCC----CEEEEEECCEEEEEECCC---------------CCEEEEECCCCCCEEEEEEEC---C
T ss_conf 75999996-------998----999999699999999999---------------966179747888889999948---9
Q ss_pred CCEEEEEECCCEEEEEECCCCEEE--EEECCCCCCEEEEEEEECCCCCCCEEEEEEC--CCEEEEEECCCCCCCCCCCCC
Q ss_conf 949999988990999995799199--9983488631899986237988859999979--990999992468766668999
Q 000602 147 NRSLAIGCSDNSIRVWDISNSSII--LEVHSPERCLLYSMKLWGDNLEALRIASGTI--YNEIIVWKVDWEHVAPLLNSP 222 (1398)
Q Consensus 147 g~~Latgs~Dg~I~iWdl~~~~~~--~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~--dg~I~iWd~~~~~~~~~~~~~ 222 (1398)
+++|++|+.|++|++||+.++... ..+..+. ..+.++.| ++++.++++++. +..+++|++.
T Consensus 70 g~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~-~~v~~v~~---s~d~~~l~~~~~~~~~~~~v~~~~----------- 134 (311)
T d1nr0a1 70 GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFS-GPVKDISW---DSESKRIAAVGEGRERFGHVFLFD----------- 134 (311)
T ss_dssp SSEEEEEETTSEEEEEESSSTTCCEEEEEECSS-SCEEEEEE---CTTSCEEEEEECCSSCSEEEEETT-----------
T ss_pred CCEEECCCCCCEEEEEEEECCCCCCCCCCCCCC-CCCCCCCC---CCCCCCCCCCCCCCCCCCCCCCCC-----------
T ss_conf 996722556736746631011110000134335-75433233---311100011112211111111111-----------
Q ss_pred CCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCE-EEEEECCCEEEEEECCCCCCCCCCCCEEEEE
Q ss_conf 987778988876202531356640579999276688899999489999-9999789909999957894138887037630
Q 000602 223 EGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVSVSDDRSARIWEVRAEYWKDSDSIEEVGS 301 (1398)
Q Consensus 223 ~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~-LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~ 301 (1398)
..+....+.+|...|.+++|+|++++ +++++.|+.|++||+.+.+. .
T Consensus 135 ----------------------~~~~~~~l~~h~~~v~~v~~~~~~~~~l~sgs~d~~i~i~d~~~~~~-----~----- 182 (311)
T d1nr0a1 135 ----------------------TGTSNGNLTGQARAMNSVDFKPSRPFRIISGSDDNTVAIFEGPPFKF-----K----- 182 (311)
T ss_dssp ----------------------TCCBCBCCCCCSSCEEEEEECSSSSCEEEEEETTSCEEEEETTTBEE-----E-----
T ss_pred ----------------------CCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCCCCC-----C-----
T ss_conf ----------------------11111111111111111111211101200011221111111111111-----1-----
Q ss_pred EEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEE-------CCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 4874088447999991--998999958992999938-994689992-------024865799999489999999982893
Q 000602 302 SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK-------EHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 302 ~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~-------~h~~~~V~si~~spdg~~lvtgg~Dg~ 371 (1398)
....+|...|.++.++ ++++++++.|+.+++|+. ++..+..+. +|.+ .|++++|+|++++|++|+.||.
T Consensus 183 ~~~~~~~~~i~~v~~~p~~~~l~~~~~d~~v~~~d~~~~~~~~~~~~~~~~~~~h~~-~V~~~~~s~~~~~l~tgs~Dg~ 261 (311)
T d1nr0a1 183 STFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSG-SVFGLTWSPDGTKIASASADKT 261 (311)
T ss_dssp EEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCEEEECBCTTSSSCSSSS-CEEEEEECTTSSEEEEEETTSE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCEEEEEECCCE
T ss_conf 111111111111234764221211111111100012446411222111111100246-5321024788999999937996
Q ss_pred EEEEEC
Q ss_conf 999995
Q 000602 372 IKVHQF 377 (1398)
Q Consensus 372 I~iwdl 377 (1398)
|++||+
T Consensus 262 v~iwd~ 267 (311)
T d1nr0a1 262 IKIWNV 267 (311)
T ss_dssp EEEEET
T ss_pred EEEEEC
T ss_conf 999999
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=2.4e-36 Score=236.71 Aligned_cols=281 Identities=17% Similarity=0.168 Sum_probs=185.1
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 036349999972189889988999980-8919999889993887998660834899997103464589875210099999
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|++++|+ || +++|++|+ |++|++||+++++.+..+...+...|.+++|+ |++ .+++++
T Consensus 11 H~~~V~~l~~s--~d----g~~l~s~s~Dg~v~vWd~~~~~~~~~~~~~h~~~v~~v~~~-------~~g----~~~~~~ 73 (299)
T d1nr0a2 11 HNKAITALSSS--AD----GKTLFSADAEGHINSWDISTGISNRVFPDVHATMITGIKTT-------SKG----DLFTVS 73 (299)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEECSSCSCSSCEEEEEEC-------TTS----CEEEEE
T ss_pred CCCCCEEEEEC--CC----CCEEEEECCCCEEEEEECCCCCEEEEECCCCCCCEEEEEEE-------CCC----EEECCC
T ss_conf 88782899997--99----99999990899299999999968899837887748998840-------331----121023
Q ss_pred CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEEC
Q ss_conf 49969999914788999988886321111555314688768999998413899499999889909999957991999983
Q 000602 95 GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVH 174 (1398)
Q Consensus 95 gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~ 174 (1398)
.|+.+++|+...... .........+...+.+++|+| ++..+++++ ++.+.+|+... ......
T Consensus 74 ~d~~v~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~s~---~g~~~~~~~-~~~i~~~~~~~--~~~~~~ 135 (299)
T d1nr0a2 74 WDDHLKVVPAGGSGV------------DSSKAVANKLSSQPLGLAVSA---DGDIAVAAC-YKHIAIYSHGK--LTEVPI 135 (299)
T ss_dssp TTTEEEEECSSSSSS------------CTTSCCEEECSSCEEEEEECT---TSSCEEEEE-SSEEEEEETTE--EEEEEC
T ss_pred CEEEEEEECCCCCCC------------CCCCCCCCCCCCCCCCCCCCC---CCCCCCCCC-CCCCCCCCCCC--CCCCCC
T ss_conf 102688731677620------------111000111134432100112---211111222-22221111111--111011
Q ss_pred CCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEE-EEEEE
Q ss_conf 48863189998623798885999997999099999246876666899998777898887620253135664057-99992
Q 000602 175 SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVN-LFRLV 253 (1398)
Q Consensus 175 ~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~-i~~l~ 253 (1398)
.+ ...++.+ ++++.++++|+.|+.|++|++. .... .....
T Consensus 136 ~~---~~~~~~~---s~~~~~l~~g~~dg~i~~~d~~---------------------------------~~~~~~~~~~ 176 (299)
T d1nr0a2 136 SY---NSSCVAL---SNDKQFVAVGGQDSKVHVYKLS---------------------------------GASVSEVKTI 176 (299)
T ss_dssp SS---CEEEEEE---CTTSCEEEEEETTSEEEEEEEE---------------------------------TTEEEEEEEE
T ss_pred CC---CCCCCCC---CCCCCCCCCCCCCCCCCCCCCC---------------------------------CCCCCCCCCC
T ss_conf 11---2332211---1111111111111111111111---------------------------------1111111111
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 7668889999948999999997899099999578941388870376304874088447999991--99899995899299
Q 000602 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 254 gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~ 331 (1398)
.|...|.+++|+|++.++++++.|+.|++|++.++.. .... ..+.+|...|.+++|+ +.+|++++.|+.|+
T Consensus 177 ~~~~~i~~~~~~~~~~~l~~~~~d~~i~~~~~~~~~~-----~~~~--~~~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~ 249 (299)
T d1nr0a2 177 VHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNFE-----LAHT--NSWTFHTAKVACVSWSPDNVRLATGSLDNSVI 249 (299)
T ss_dssp ECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTTE-----ESCC--CCCCCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----CCCC--CCCCCCCCCCCCCCCCCCCCCEEEECCCCEEE
T ss_conf 1111111111111111111111111111111111111-----1111--11111111111112466645138882899799
Q ss_pred EECC-CCCE--EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 9938-9946--899920248657999994899999999828939999959
Q 000602 332 VWGS-DGKQ--LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 332 iWd~-~g~~--l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
+||+ .+.. ......|....+.++.+ +++.+|++++.|+.|++||+.
T Consensus 250 iwd~~~~~~~~~~~~~~~~~~~v~~~~~-~~~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 250 VWNMNKPSDHPIIIKGAHAMSSVNSVIW-LNETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEETTCTTSCCEEETTSSTTSCEEEEEE-EETTEEEEEETTSCEEEEECC
T ss_pred EEECCCCCCCEEEEECCCCCCCEEEEEE-CCCCEEEEEECCCEEEEEECC
T ss_conf 9989999731489834898896899997-798999999289979999444
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=5.7e-35 Score=228.17 Aligned_cols=76 Identities=30% Similarity=0.615 Sum_probs=32.6
Q ss_pred EEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 99992766888999994899999999789909999957894138887037630487408844799999199899995899
Q 000602 249 LFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDC 328 (1398)
Q Consensus 249 i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~~~lvsgs~Dg 328 (1398)
...++||.+.|.+ ++++++++|+||+.|++|++||+.+++. + ..+.+|...|++++|++.+|++++.|+
T Consensus 9 ~~~l~GH~~~V~s-~~~~~g~~l~sgs~Dg~i~vWd~~~~~~-----~-----~~~~~h~~~V~~v~~~~~~l~s~s~D~ 77 (342)
T d2ovrb2 9 PKVLKGHDDHVIT-CLQFCGNRIVSGSDDNTLKVWSAVTGKC-----L-----RTLVGHTGGVWSSQMRDNIIISGSTDR 77 (342)
T ss_dssp CEEEECSTTSCEE-EEEEETTEEEEEETTSCEEEEETTTCCE-----E-----EECCCCSSCEEEEEEETTEEEEEETTS
T ss_pred CEEECCCCCCEEE-EEEECCCEEEEEECCCEEEEEECCCCCE-----E-----EEEECCCCCEEEEEECCCCCCCCEECC
T ss_conf 8898886875099-9997899999991899099998999979-----9-----999488999899994798632100000
Q ss_pred CEEEECC
Q ss_conf 2999938
Q 000602 329 TCRVWGS 335 (1398)
Q Consensus 329 ~i~iWd~ 335 (1398)
++++|+.
T Consensus 78 ~~~~~~~ 84 (342)
T d2ovrb2 78 TLKVWNA 84 (342)
T ss_dssp CEEEEET
T ss_pred CCCCCCC
T ss_conf 1111111
|
| >d1vyhc1 b.69.4.1 (C:92-408) Platelet-activating factor acetylhydrolase IB subunit alpha {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Platelet-activating factor acetylhydrolase IB subunit alpha species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.1e-35 Score=232.62 Aligned_cols=305 Identities=16% Similarity=0.237 Sum_probs=185.6
Q ss_pred EEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCC
Q ss_conf 55531468876899999841389949999988990999995799199998348863189998623798885999997999
Q 000602 124 LVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYN 203 (1398)
Q Consensus 124 ~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg 203 (1398)
..+.|.||.+.|++++|+| ++.+|++|+.|++|++||+.+++.+.
T Consensus 9 ~~~~L~GH~~~I~~l~~sp---~~~~l~s~s~Dg~i~iWd~~~~~~~~-------------------------------- 53 (317)
T d1vyhc1 9 EKYALSGHRSPVTRVIFHP---VFSVMVSASEDATIKVWDYETGDFER-------------------------------- 53 (317)
T ss_dssp CSCEEECCSSCEEEEEECS---SSSEEEEEESSSCEEEEETTTCCCCE--------------------------------
T ss_pred CCEEECCCCCCEEEEEECC---CCCEEEEEECCCEEEEEECCCCCEEE--------------------------------
T ss_conf 4489858888768999938---98999999389929999899997999--------------------------------
Q ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEE
Q ss_conf 09999924687666689999877789888762025313566405799992766888999994899999999789909999
Q 000602 204 EIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIW 283 (1398)
Q Consensus 204 ~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iW 283 (1398)
.+.+|...|.+++|+|++.+++++..++.+.+|
T Consensus 54 -----------------------------------------------~~~~h~~~V~~~~~~~~~~~~~~~~~~~~~~~~ 86 (317)
T d1vyhc1 54 -----------------------------------------------TLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 86 (317)
T ss_dssp -----------------------------------------------EECCCSSCEEEEEECTTSSEEEEEETTSCCCEE
T ss_pred -----------------------------------------------EEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
T ss_conf -----------------------------------------------995788867777630111101111111110111
Q ss_pred ECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 9578941388870376304874088447999991--998999958992999938-9946899920248657999994899
Q 000602 284 EVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 284 d~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg 360 (1398)
+...... . ..+.+|...+.++.++ ++.+++++.|+.+++|++ +++.+..+..|.. .+.++++++++
T Consensus 87 ~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 155 (317)
T d1vyhc1 87 DFQGFEC-----I-----RTMHGHDHNVSSVSIMPNGDHIVSASRDKTIKMWEVQTGYCVKTFTGHRE-WVRMVRPNQDG 155 (317)
T ss_dssp ETTSSCE-----E-----ECCCCCSSCEEEEEECSSSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECTTS
T ss_pred CCCCCCC-----C-----CCCCCCCCCCEEEECCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC-CCEEEECCCCC
T ss_conf 0011111-----1-----11000000000000169985577652675235751144303468716777-63000016679
Q ss_pred CEEEEEECCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECC
Q ss_conf 99999982893999995988-75532478764101687307996527975423411678974799999119909999908
Q 000602 361 SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1398)
Q Consensus 361 ~~lvtgg~Dg~I~iwdl~~~-~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~ 439 (1398)
.+|++++.|+.+++|++... ... .+..+...+.++.+.++.........
T Consensus 156 ~~l~~~~~d~~v~~~~~~~~~~~~------------------------------~~~~~~~~i~~~~~~~~~~~~~~~~~ 205 (317)
T d1vyhc1 156 TLIASCSNDQTVRVWVVATKECKA------------------------------ELREHRHVVECISWAPESSYSSISEA 205 (317)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEE------------------------------EECCCSSCEEEEEECCSCGGGGGGGC
T ss_pred CEEEEEECCCEEEEEEECCCEEEE------------------------------EEECCCCCCEEEEEEECCCCCEEECC
T ss_conf 999999279829997512540347------------------------------88247787337998632564111034
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 93899995038885048978524896399985068999886899969999928997999997178546511356664047
Q 000602 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1398)
Q Consensus 440 g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~ 519 (1398)
........ ...+.++++++.|+.|++|++.++..... +. .
T Consensus 206 ------------------------~~~~~~~~---------~~~~~~~~~~~~d~~i~~~~~~~~~~~~~------~~-~ 245 (317)
T d1vyhc1 206 ------------------------TGSETKKS---------GKPGPFLLSGSRDKTIKMWDVSTGMCLMT------LV-G 245 (317)
T ss_dssp ------------------------CSCC----------------CCEEEEEETTSEEEEEETTTTEEEEE------EE-C
T ss_pred ------------------------CCCEEEEE---------CCCCCEEEECCCCCEEEEEECCCCCEEEE------EE-C
T ss_conf ------------------------56303430---------25886147516997899988899968899------96-8
Q ss_pred CCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEC
Q ss_conf 53416689997519992999981899399995689998643236764202111111134698189999532998899961
Q 000602 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (1398)
Q Consensus 520 ~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs 599 (1398)
+...+.. +++++++++|++++.||.|++|++.... +...+ .+|...|++++|+|++++|++|+
T Consensus 246 ~~~~v~~--~~~~~~~~~l~s~~~dg~i~iwd~~~~~--------------~~~~~-~~h~~~V~~~~~s~~~~~l~s~s 308 (317)
T d1vyhc1 246 HDNWVRG--VLFHSGGKFILSCADDKTLRVWDYKNKR--------------CMKTL-NAHEHFVTSLDFHKTAPYVVTGS 308 (317)
T ss_dssp CSSCEEE--EEECSSSSCEEEEETTTEEEEECCTTSC--------------CCEEE-ECCSSCEEEEEECSSSSCEEEEE
T ss_pred CCCCEEE--EEECCCCCEEEEEECCCEEEEEECCCCC--------------EEEEE-CCCCCCEEEEEECCCCCEEEEEE
T ss_conf 8998799--9987999999999798949999999991--------------99999-28999889999949999999992
Q ss_pred CCCEEEEEE
Q ss_conf 788199998
Q 000602 600 LRGNLVLFP 608 (1398)
Q Consensus 600 ~dGtI~iwd 608 (1398)
.||+|++|+
T Consensus 309 ~Dg~i~iWd 317 (317)
T d1vyhc1 309 VDQTVKVWE 317 (317)
T ss_dssp TTSEEEEEC
T ss_pred CCCEEEEEC
T ss_conf 899499829
|
| >d1k8kc_ b.69.4.1 (C:) Arp2/3 complex 41 kDa subunit ARPC1 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Arp2/3 complex 41 kDa subunit ARPC1 species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=5.6e-35 Score=228.22 Aligned_cols=165 Identities=13% Similarity=0.106 Sum_probs=89.0
Q ss_pred CCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEEC
Q ss_conf 348999971034645898752100999994-9969999914788999988886321111555314688768999998413
Q 000602 66 IRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVC 144 (1398)
Q Consensus 66 ~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~ 144 (1398)
.+|.+++|+ |++ .++++++ ++.|++|+++... ...+..+.+|.++|.+++|+|
T Consensus 8 ~pIt~~~~s-------~dg----~~la~~~~~~~i~iw~~~~~~-------------~~~~~~l~gH~~~V~~l~fsp-- 61 (371)
T d1k8kc_ 8 EPISCHAWN-------KDR----TQIAICPNNHEVHIYEKSGNK-------------WVQVHELKEHNGQVTGVDWAP-- 61 (371)
T ss_dssp SCCCEEEEC-------TTS----SEEEEECSSSEEEEEEEETTE-------------EEEEEEEECCSSCEEEEEEET--
T ss_pred CCEEEEEEC-------CCC----CEEEEEECCCEEEEEECCCCC-------------EEEEEEECCCCCCEEEEEECC--
T ss_conf 883899998-------999----999999488989999888997-------------899999558899888999979--
Q ss_pred CCCCEEEEEECCCEEEEEECCCCEEEEEEC-CCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCC
Q ss_conf 899499999889909999957991999983-4886318999862379888599999799909999924687666689999
Q 000602 145 NGNRSLAIGCSDNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPE 223 (1398)
Q Consensus 145 ~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~-~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~ 223 (1398)
++.+|++++.|++|++||+.++.....+. ......+.++.+ +|++..+++++.|+.+++|++....
T Consensus 62 -~~~~l~s~s~D~~i~vWd~~~~~~~~~~~~~~~~~~v~~i~~---~p~~~~l~~~s~d~~i~i~~~~~~~--------- 128 (371)
T d1k8kc_ 62 -DSNRIVTCGTDRNAYVWTLKGRTWKPTLVILRINRAARCVRW---APNEKKFAVGSGSRVISICYFEQEN--------- 128 (371)
T ss_dssp -TTTEEEEEETTSCEEEEEEETTEEEEEEECCCCSSCEEEEEE---CTTSSEEEEEETTSSEEEEEEETTT---------
T ss_pred -CCCEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCC---CCCCCCCEEECCCCCCEEEEEECCC---------
T ss_conf -999999997999399986203321100122322110001111---1112110000025763025442033---------
Q ss_pred CCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 877789888762025313566405799992766888999994899999999789909999957894
Q 000602 224 GNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 224 ~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~ 289 (1398)
..........+|...|.+++|+|++.+|++++.|+++++|+.....
T Consensus 129 --------------------~~~~~~~~~~~~~~~v~~v~~~p~~~~l~s~s~D~~v~v~~~~~~~ 174 (371)
T d1k8kc_ 129 --------------------DWWVCKHIKKPIRSTVLSLDWHPNSVLLAAGSCDFKCRIFSAYIKE 174 (371)
T ss_dssp --------------------TEEEEEEECTTCCSCEEEEEECTTSSEEEEEETTSCEEEEECCCTT
T ss_pred --------------------CCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCEEEEEEECCCC
T ss_conf --------------------4331110010111222111111111110001347679998401576
|
| >d2ovrb2 b.69.4.1 (B:2365-2706) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD repeat-containing protein 7, FBXW7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=8.9e-34 Score=220.80 Aligned_cols=329 Identities=20% Similarity=0.282 Sum_probs=175.3
Q ss_pred CEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEC
Q ss_conf 11555314688768999998413899499999889909999957991999983488631899986237988859999979
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 122 ~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~ 201 (1398)
.++.+.++||.+.|.+ ++++ ++++|+||+.|++|++||+.+++++..+..|.. .++++.+. ..++++++.
T Consensus 6 ~~~~~~l~GH~~~V~s-~~~~---~g~~l~sgs~Dg~i~vWd~~~~~~~~~~~~h~~-~V~~v~~~-----~~~l~s~s~ 75 (342)
T d2ovrb2 6 LKSPKVLKGHDDHVIT-CLQF---CGNRIVSGSDDNTLKVWSAVTGKCLRTLVGHTG-GVWSSQMR-----DNIIISGST 75 (342)
T ss_dssp CCCCEEEECSTTSCEE-EEEE---ETTEEEEEETTSCEEEEETTTCCEEEECCCCSS-CEEEEEEE-----TTEEEEEET
T ss_pred CCCCEEECCCCCCEEE-EEEE---CCCEEEEEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEEC-----CCCCCCCEE
T ss_conf 8758898886875099-9997---899999991899099998999979999948899-98999947-----986321000
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 99099999246876666899998777898887620253135664057999927668889999948999999997899099
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1398)
Q Consensus 202 dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~ 281 (1398)
|+.+++|+.. ..........+...+...... ...+..+..|+.+.
T Consensus 76 D~~~~~~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~i~ 120 (342)
T d2ovrb2 76 DRTLKVWNAE---------------------------------TGECIHTLYGHTSTVRCMHLH--EKRVVSGSRDATLR 120 (342)
T ss_dssp TSCEEEEETT---------------------------------TTEEEEEECCCSSCEEEEEEE--TTEEEEEETTSEEE
T ss_pred CCCCCCCCCC---------------------------------CCCCEECCCCCCEEEEEEECC--CCCCCCCCCCEEEE
T ss_conf 0011111111---------------------------------000000012333047652024--65221234440378
Q ss_pred EEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCC
Q ss_conf 999578941388870376304874088447999991998999958992999938-9946899920248657999994899
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLS 360 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg 360 (1398)
+|+..++.. .. .+..+.............+++++.|+.+++|+. ..+.+..+.+|.. .+..+. +++
T Consensus 121 ~~~~~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~~d~~i~~~d~~~~~~~~~~~~~~~-~~~~~~--~~~ 187 (342)
T d2ovrb2 121 VWDIETGQC-----LH-----VLMGHVAAVRCVQYDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTN-RVYSLQ--FDG 187 (342)
T ss_dssp EEESSSCCE-----EE-----EEECCSSCEEEEEECSSCEEEEETTSCEEEEEGGGTEEEEEECCCSS-CEEEEE--ECS
T ss_pred EEECCCCCC-----EE-----EEECCCCCCEEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCCC-CCCCCC--CCC
T ss_conf 740355630-----01-----11001111000001333024335898699952523436678727544-421006--899
Q ss_pred CEEEEEECCCCEEEEECCCC-CCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECC
Q ss_conf 99999982893999995988-75532478764101687307996527975423411678974799999119909999908
Q 000602 361 SLLVTAGFDSAIKVHQFQAF-LPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1398)
Q Consensus 361 ~~lvtgg~Dg~I~iwdl~~~-~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~ 439 (1398)
.++++++.||.|++|++... .+.. +.
T Consensus 188 ~~l~s~~~dg~i~~~d~~~~~~~~~------------------------------~~----------------------- 214 (342)
T d2ovrb2 188 IHVVSGSLDTSIRVWDVETGNCIHT------------------------------LT----------------------- 214 (342)
T ss_dssp SEEEEEETTSCEEEEETTTCCEEEE------------------------------EC-----------------------
T ss_pred CEEEEEECCCEEEEEECCCCEEEEE------------------------------EC-----------------------
T ss_conf 9999995899399952556536567------------------------------41-----------------------
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 93899995038885048978524896399985068999886899969999928997999997178546511356664047
Q 000602 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1398)
Q Consensus 440 g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~ 519 (1398)
.+ ...+.++.. .++++++++.||.|++|++....... .....
T Consensus 215 ---------------------~~-~~~v~~~~~----------~~~~l~s~s~d~~i~iwd~~~~~~~~------~~~~~ 256 (342)
T d2ovrb2 215 ---------------------GH-QSLTSGMEL----------KDNILVSGNADSTVKIWDIKTGQCLQ------TLQGP 256 (342)
T ss_dssp ---------------------CC-CSCEEEEEE----------ETTEEEEEETTSCEEEEETTTCCEEE------EECST
T ss_pred ---------------------CC-CCCEEEEEC----------CCCEEEEECCCCEEEEEECCCCCCCC------CCCCC
T ss_conf ---------------------66-532057706----------89999997489889998655442211------12210
Q ss_pred CCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEEC
Q ss_conf 53416689997519992999981899399995689998643236764202111111134698189999532998899961
Q 000602 520 IERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGD 599 (1398)
Q Consensus 520 ~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs 599 (1398)
..+.... .+.+.++.++++++.||.|++|+++.+.... .++.....+|...|++++|+|++.+||+|+
T Consensus 257 ~~~~~~~--~~~~~~~~~~~s~s~Dg~i~iwd~~tg~~i~----------~~~~~~~~~~~~~v~~v~~s~~~~~la~g~ 324 (342)
T d2ovrb2 257 NKHQSAV--TCLQFNKNFVITSSDDGTVKLWDLKTGEFIR----------NLVTLESGGSGGVVWRIRASNTKLVCAVGS 324 (342)
T ss_dssp TSCSSCE--EEEEECSSEEEEEETTSEEEEEETTTCCEEE----------EEEECTTGGGTCEEEEEEECSSEEEEEEEC
T ss_pred CEEEECE--EECCCCCCEEEEECCCCEEEEEECCCCCEEE----------EEECCCCCCCCCCEEEEEECCCCCEEEEEE
T ss_conf 0011010--0001379844999089989999999997989----------986234789889789999879998999996
Q ss_pred CCCE----EEEEECCC
Q ss_conf 7881----99998797
Q 000602 600 LRGN----LVLFPLLR 611 (1398)
Q Consensus 600 ~dGt----I~iwd~~~ 611 (1398)
.||+ |++||++.
T Consensus 325 ~dGt~~~~l~~~Df~~ 340 (342)
T d2ovrb2 325 RNGTEETKLLVLDFDV 340 (342)
T ss_dssp SSSSSCCEEEEEECCC
T ss_pred CCCCCEEEEEEEECCC
T ss_conf 8999704899993899
|
| >d1nexb2 b.69.4.1 (B:370-744) Cdc4 propeller domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Cdc4 propeller domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.1e-32 Score=212.25 Aligned_cols=279 Identities=19% Similarity=0.311 Sum_probs=135.5
Q ss_pred ECCCE-EEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEE
Q ss_conf 03634-9999972189889988999980-891999988999388799866083489999710346458987521009999
Q 000602 16 YLGEI-SALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVAL 93 (1398)
Q Consensus 16 h~~~V-taiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~ 93 (1398)
|...| +|++|+ +++|++|+ |++|+|||+.+++++.++.+|.+ .|.+++|+ |++ .++++
T Consensus 11 H~~~vitc~~~~--------~~~l~tgs~Dg~i~vWd~~~~~~~~~l~~H~~-~V~~l~~s-------~~~----~l~s~ 70 (355)
T d1nexb2 11 HMTSVITCLQFE--------DNYVITGADDKMIRVYDSINKKFLLQLSGHDG-GVWALKYA-------HGG----ILVSG 70 (355)
T ss_dssp CSSSCEEEEEEE--------TTEEEEEETTTEEEEEETTTTEEEEEEECCSS-CEEEEEEE-------TTT----EEEEE
T ss_pred CCCCCEEEEEEC--------CCEEEEEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEEC-------CCC----EEEEE
T ss_conf 378869999988--------99999991899099998999939999978999-88999986-------999----99999
Q ss_pred ECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 94996999991478899998888632111155531468876899999841389949999988990999995799199998
Q 000602 94 FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 94 ~gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
+.|++|++|++.... .........+........+.+ ++..+++++.|+.|++|++.+.......
T Consensus 71 s~D~~i~iw~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~d~~i~iw~~~~~~~~~~~ 134 (355)
T d1nexb2 71 STDRTVRVWDIKKGC-------------CTHVFEGHNSTVRCLDIVEYK---NIKYIVTGSRDNTLHVWKLPKESSVPDH 134 (355)
T ss_dssp ETTCCEEEEETTTTE-------------EEEEECCCSSCEEEEEEEEET---TEEEEEEEETTSEEEEEECCC-------
T ss_pred ECCCCCCCCCCCCCC-------------CCCCCCCCCCCCCCCCCCCCC---CCCEEEEECCCCCEEEEECCCCCEECCC
T ss_conf 645244321111111-------------111110011111111111112---3220455438886899985677300124
Q ss_pred CCCC------------CCEEEEEEE-----ECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCE
Q ss_conf 3488------------631899986-----23798885999997999099999246876666899998777898887620
Q 000602 174 HSPE------------RCLLYSMKL-----WGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKC 236 (1398)
Q Consensus 174 ~~~~------------~~~~~sv~~-----~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~ 236 (1398)
.... ......... ....+++..++++..|+.|++|++.
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~d~~i~~~d~~------------------------- 189 (355)
T d1nexb2 135 GEEHDYPLVFHTPEENPYFVGVLRGHMASVRTVSGHGNIVVSGSYDNTLIVWDVA------------------------- 189 (355)
T ss_dssp ----CCCEEESCTTTCTTEEEEEECCSSCEEEEEEETTEEEEEETTSCEEEEETT-------------------------
T ss_pred CCCCEECCCEECCCCCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCEEEEEECC-------------------------
T ss_conf 6520001000001123401210110022210000256334421144204443013-------------------------
Q ss_pred EEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEE
Q ss_conf 25313566405799992766888999994899999999789909999957894138887037630487408844799999
Q 000602 237 FKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCL 316 (1398)
Q Consensus 237 i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~ 316 (1398)
..+.+....++...+.++.|+|++.++++++.|+.|++|+..++.. + ..+.+|...|.++.+
T Consensus 190 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~i~i~d~~~~~~-----~-----~~~~~h~~~v~~~~~ 251 (355)
T d1nexb2 190 --------QMKCLYILSGHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGEL-----M-----YTLQGHTALVGLLRL 251 (355)
T ss_dssp --------TTEEEEEECCCSSCEEEEEEETTTTEEEEEETTSCEEEEETTTCCE-----E-----EEECCCSSCCCEEEE
T ss_pred --------CCCCEEEEECCCCCCCCCCCCCCCEEEECCCCCCEEEEEECCCCCC-----C-----CCCCCCCCCCCCCCC
T ss_conf --------1100011000123321111112100210124563687630122111-----1-----111111111111123
Q ss_pred CCCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEE-EECCCCCEEEEEECCCCEEEEEC
Q ss_conf 1998999958992999938-9946899920248657999-99489999999982893999995
Q 000602 317 TDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRC-LYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 317 s~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si-~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
++++|++++.||.|++||+ +... .+..|.. .+.++ .+++++.++++ +.|+.|++||+
T Consensus 252 ~~~~l~~~~~dg~i~iwd~~~~~~--~~~~~~~-~~~~~~~~~~~~~~l~~-g~d~~i~vwd~ 310 (355)
T d1nexb2 252 SDKFLVSAAADGSIRGWDANDYSR--KFSYHHT-NLSAITTFYVSDNILVS-GSENQFNIYNL 310 (355)
T ss_dssp CSSEEEEECTTSEEEEEETTTCCE--EEEEECT-TCCCCCEEEECSSEEEE-EETTEEEEEET
T ss_pred CCCEEEEEECCCCCCCCCCCCCCE--ECCCCCC-CCEEEEEECCCCCEEEE-EECCEEEEEEC
T ss_conf 210033320111111111111110--0012468-82299998499989999-80997999999
|
| >d1tbga_ b.69.4.1 (A:) beta1-subunit of the signal-transducing G protein heterotrimer {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: beta1-subunit of the signal-transducing G protein heterotrimer species: Cow (Bos taurus) [TaxId: 9913]
Probab=100.00 E-value=3e-32 Score=211.30 Aligned_cols=209 Identities=13% Similarity=0.261 Sum_probs=119.2
Q ss_pred CEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEEC
Q ss_conf 11555314688768999998413899499999889909999957991999983488631899986237988859999979
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTI 201 (1398)
Q Consensus 122 ~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~ 201 (1398)
.+..++|+||.+.|++++|+| ++.+|++|+.||+|++||+.+++.+..+..+.. .+.++.+ +|++.++++|+.
T Consensus 45 ~~~~~tL~GH~~~I~~l~~s~---~~~~l~sgs~Dg~v~iWd~~~~~~~~~~~~~~~-~v~~v~~---~~~~~~l~~~~~ 117 (340)
T d1tbga_ 45 MRTRRTLRGHLAKIYAMHWGT---DSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSS-WVMTCAY---APSGNYVACGGL 117 (340)
T ss_dssp CCEEEEECCCSSCEEEEEECT---TSSEEEEEETTTEEEEEETTTTEEEEEEECSCS-CEEEEEE---CTTSSEEEEEET
T ss_pred EEEEEEECCCCCCEEEEEECC---CCCEEEEEECCCCEEEEECCCCEEEEEEECCCC-CEEEEEE---ECCCEEEEEECC
T ss_conf 065279888789888999989---999999997899555631021025799724653-3775676---012114431013
Q ss_pred CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEE
Q ss_conf 99099999246876666899998777898887620253135664057999927668889999948999999997899099
Q 000602 202 YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSAR 281 (1398)
Q Consensus 202 dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~ 281 (1398)
|+.+.+|+..... ........+.+|........... ...+.....|....
T Consensus 118 d~~i~~~~~~~~~-----------------------------~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~ 167 (340)
T d1tbga_ 118 DNICSIYNLKTRE-----------------------------GNVRVSRELAGHTGYLSCCRFLD-DNQIVTSSGDTTCA 167 (340)
T ss_dssp TCCEEEEESSSSC-----------------------------SCCCEEEEECCCSSCEEEEEEEE-TTEEEEEETTTEEE
T ss_pred CCEEECCCCCCCC-----------------------------CCCCCCEECCCCCCCCCCCCCCC-CCCCCCCCCCCCCC
T ss_conf 3201013322221-----------------------------22211100135421101111111-11111112445432
Q ss_pred EEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECC
Q ss_conf 999578941388870376304874088447999991--998999958992999938-99468999202486579999948
Q 000602 282 IWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDS 358 (1398)
Q Consensus 282 iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~sp 358 (1398)
.|....... . .....+...+....+. ..++++++.|+.+++||+ +++.+..+.+|.. .|++++|+|
T Consensus 168 ~~~~~~~~~-----~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~v~i~d~~~~~~~~~~~~h~~-~i~~v~~~p 236 (340)
T d1tbga_ 168 LWDIETGQQ-----T-----TTFTGHTGDVMSLSLAPDTRLFVSGACDASAKLWDVREGMCRQTFTGHES-DINAICFFP 236 (340)
T ss_dssp EEETTTTEE-----E-----EEEECCSSCEEEEEECTTSSEEEEEETTTEEEEEETTTTEEEEEECCCSS-CEEEEEECT
T ss_pred CCCCCCCCC-----C-----CCCCCCCEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCEEEEEECCCC-CEEEEEECC
T ss_conf 001232211-----1-----11233101576300124421268760573699999999948899957889-858999979
Q ss_pred CCCEEEEEECCCCEEEEECC
Q ss_conf 99999999828939999959
Q 000602 359 LSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 359 dg~~lvtgg~Dg~I~iwdl~ 378 (1398)
++.+|++++.|+.+++|++.
T Consensus 237 ~~~~l~s~s~d~~i~~~~~~ 256 (340)
T d1tbga_ 237 NGNAFATGSDDATCRLFDLR 256 (340)
T ss_dssp TSSEEEEEETTSCEEEEETT
T ss_pred CCCEEEEEECCCEEEEEEEC
T ss_conf 98999999699969997521
|
| >d1nr0a2 b.69.4.1 (A:313-611) Actin interacting protein 1 {Nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=100.00 E-value=3.4e-33 Score=217.20 Aligned_cols=291 Identities=16% Similarity=0.198 Sum_probs=170.4
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECC-CEEEEEE
Q ss_conf 579999276688899999489999999978990999995789413888703763048740884479999919-9899995
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD-SFIITAG 325 (1398)
Q Consensus 247 ~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~-~~lvsgs 325 (1398)
...+.+.||.+.|++++|+|++++|+|++.|++|++||+.+++. .. ....+|...|++++|++ ..+++++
T Consensus 3 ~~~~~~~GH~~~V~~l~~s~dg~~l~s~s~Dg~v~vWd~~~~~~-----~~----~~~~~h~~~v~~v~~~~~g~~~~~~ 73 (299)
T d1nr0a2 3 SIDQVRYGHNKAITALSSSADGKTLFSADAEGHINSWDISTGIS-----NR----VFPDVHATMITGIKTTSKGDLFTVS 73 (299)
T ss_dssp EEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EE----CSSCSCSSCEEEEEECTTSCEEEEE
T ss_pred CCCEECCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCCE-----EE----EECCCCCCCEEEEEEECCCEEECCC
T ss_conf 61368488887828999979999999990899299999999968-----89----9837887748998840331121023
Q ss_pred CCCCEEEECCCCCE----EEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 89929999389946----89992024865799999489999999982893999995988755324787641016873079
Q 000602 326 EDCTCRVWGSDGKQ----LKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIF 401 (1398)
Q Consensus 326 ~Dg~i~iWd~~g~~----l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~ 401 (1398)
.|+.+++|+..... ......+.. .+.++++++++.+++.+ .++.+++|+..
T Consensus 74 ~d~~v~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~g~~~~~~-~~~~i~~~~~~----------------------- 128 (299)
T d1nr0a2 74 WDDHLKVVPAGGSGVDSSKAVANKLSS-QPLGLAVSADGDIAVAA-CYKHIAIYSHG----------------------- 128 (299)
T ss_dssp TTTEEEEECSSSSSSCTTSCCEEECSS-CEEEEEECTTSSCEEEE-ESSEEEEEETT-----------------------
T ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCC-CCCCCCCCCCCCCCCCC-CCCCCCCCCCC-----------------------
T ss_conf 102688731677620111000111134-43210011221111122-22222111111-----------------------
Q ss_pred EEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 96527975423411678974799999119909999908938999950388850489785248963999850689998868
Q 000602 402 SIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPC 481 (1398)
Q Consensus 402 ~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~ 481 (1398)
. ...........++.+ .
T Consensus 129 --------------------------------------------------~-----~~~~~~~~~~~~~~~--------s 145 (299)
T d1nr0a2 129 --------------------------------------------------K-----LTEVPISYNSSCVAL--------S 145 (299)
T ss_dssp --------------------------------------------------E-----EEEEECSSCEEEEEE--------C
T ss_pred --------------------------------------------------C-----CCCCCCCCCCCCCCC--------C
T ss_conf --------------------------------------------------1-----111011112332211--------1
Q ss_pred CCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCC
Q ss_conf 99969999928997999997178546511356664047534166899975199929999818993999956899986432
Q 000602 482 GIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCY 561 (1398)
Q Consensus 482 ~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~ 561 (1398)
++++++++|+.||.+++|++.++..... . ...+...+.. +++++++++|++++.++.+++|++.....
T Consensus 146 ~~~~~l~~g~~dg~i~~~d~~~~~~~~~-----~-~~~~~~~i~~--~~~~~~~~~l~~~~~d~~i~~~~~~~~~~---- 213 (299)
T d1nr0a2 146 NDKQFVAVGGQDSKVHVYKLSGASVSEV-----K-TIVHPAEITS--VAFSNNGAFLVATDQSRKVIPYSVANNFE---- 213 (299)
T ss_dssp TTSCEEEEEETTSEEEEEEEETTEEEEE-----E-EEECSSCEEE--EEECTTSSEEEEEETTSCEEEEEGGGTTE----
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCC-----C-CCCCCCCCCC--CCCCCCCCCCCCCCCCCCCCCCCCCCCCC----
T ss_conf 1111111111111111111111111111-----1-1111111111--11111111111111111111111111111----
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEE
Q ss_conf 36764202111111134698189999532998899961788199998797433564544301105630001345764489
Q 000602 562 ESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVS 641 (1398)
Q Consensus 562 ~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~Vt 641 (1398)
...... ...|...|++++|+|++++|++|+.||+|++|++.+... .+. .....|....|+
T Consensus 214 -------~~~~~~-~~~h~~~v~~l~~s~~~~~l~sgs~dg~i~iwd~~~~~~-----------~~~-~~~~~~~~~~v~ 273 (299)
T d1nr0a2 214 -------LAHTNS-WTFHTAKVACVSWSPDNVRLATGSLDNSVIVWNMNKPSD-----------HPI-IIKGAHAMSSVN 273 (299)
T ss_dssp -------ESCCCC-CCCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTCTTS-----------CCE-EETTSSTTSCEE
T ss_pred -------CCCCCC-CCCCCCCCCCCCCCCCCCCEEEECCCCEEEEEECCCCCC-----------CEE-EEECCCCCCCEE
T ss_conf -------111111-111111111112466645138882899799998999973-----------148-983489889689
Q ss_pred EEEEEEECCCCEEEEEECCCCCEEEEEEE
Q ss_conf 99997408983099997289639999994
Q 000602 642 TLSVAKLRSNQTEIRSTGGDGCICYLEYD 670 (1398)
Q Consensus 642 sI~~~~~~~~~~~l~S~g~DG~i~iw~i~ 670 (1398)
.+.+.+ +.+|+|++.||.|++|+++
T Consensus 274 ~~~~~~----~~~l~s~s~D~~i~iWdl~ 298 (299)
T d1nr0a2 274 SVIWLN----ETTIVSAGQDSNIKFWNVP 298 (299)
T ss_dssp EEEEEE----TTEEEEEETTSCEEEEECC
T ss_pred EEEECC----CCEEEEEECCCEEEEEECC
T ss_conf 999779----8999999289979999444
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=4.4e-32 Score=210.31 Aligned_cols=290 Identities=13% Similarity=0.128 Sum_probs=209.5
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEECCC--EEEEECCCC--EEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 036349999972189889988999980891--999988999--3887998660834899997103464589875210099
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGSGSQ--VLLYDLEAG--TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~dg~--I~Iwd~~tg--~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
..+.+++++|+ |+ +..|+.+.+.. |+.|+.... ..+..+.+|+...|.+++|+|. .++ .++
T Consensus 16 ~~~~~t~l~~~--~~----~~~la~~~~~~~~i~~~~~~~~~~~~~~~~~gh~~~~v~~v~fsP~-----~~g----~~l 80 (325)
T d1pgua1 16 QRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFSPI-----KGS----QYL 80 (325)
T ss_dssp CTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEECSS-----TTC----CEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEEECCCCCCCCEEEEECCCCCCEEEEEEEEC-----CCC----CEE
T ss_conf 79984799998--99----7999999699879999768888765028990789998899998117-----999----799
Q ss_pred EEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCE
Q ss_conf 9994-996999991478899998888632111155531468876899999841389949999988--9909999957991
Q 000602 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS--DNSIRVWDISNSS 168 (1398)
Q Consensus 92 a~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~--Dg~I~iWdl~~~~ 168 (1398)
++++ |++|++|++...... ..........+..|.+.|.+++|++ ++.+|++++. ++.+++|+..+++
T Consensus 81 asgs~Dg~i~iWd~~~~~~~-------~~~~~~~~~~~~~~~~~v~~v~~s~---~~~~l~~~~~~~~~~~~~~~~~~~~ 150 (325)
T d1pgua1 81 CSGDESGKVIVWGWTFDKES-------NSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEGRDNFGVFISWDSGN 150 (325)
T ss_dssp EEEETTSEEEEEEEEEEGGG-------TEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECCSSCSEEEEETTTCC
T ss_pred EEEECCCCEEEEEECCCCCE-------EEEECCCCCCCCCCCCCEEEEEECC---CCCCCCEEECCCCCEEEEEEECCCC
T ss_conf 99948997798540588621-------5651002541136567377999899---9882201001244047888502331
Q ss_pred EEEEECCCCCCEEEEEEEECCCCCC-CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEE
Q ss_conf 9999834886318999862379888-599999799909999924687666689999877789888762025313566405
Q 000602 169 IILEVHSPERCLLYSMKLWGDNLEA-LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAV 247 (1398)
Q Consensus 169 ~~~~l~~~~~~~~~sv~~~~~s~d~-~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~ 247 (1398)
.+..+..+.. .+.++.+ ++++ ..+++++.|+.+++|+.. ..+
T Consensus 151 ~~~~~~~h~~-~v~~~~~---~~~~~~~~~~~~~d~~v~~~d~~---------------------------------~~~ 193 (325)
T d1pgua1 151 SLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP---------------------------------PFK 193 (325)
T ss_dssp EEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT---------------------------------TBE
T ss_pred CCEEEEECCC-CCCCCCC---CCCCCCEEEEEECCCCCCCCCCC---------------------------------CCC
T ss_conf 1001200123-4321111---23432068886211122111122---------------------------------110
Q ss_pred EEEE---EECCCCCEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCE----EEEEEC-C
Q ss_conf 7999---9276688899999489-99999997899099999578941388870376304874088447----999991-9
Q 000602 248 NLFR---LVGHEGSIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARV----WDCCLT-D 318 (1398)
Q Consensus 248 ~i~~---l~gH~~~I~~iafspd-g~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V----~~i~~s-~ 318 (1398)
.... ..+|...|.+++|+|+ +.++++++.|+.|++||+.+++. +. .+.+|...+ +++.+. +
T Consensus 194 ~~~~~~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~-----~~-----~l~~~~~~v~~~~~s~~~~dg 263 (325)
T d1pgua1 194 FSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LK-----YIEDDQEPVQGGIFALSWLDS 263 (325)
T ss_dssp EEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EE-----ECCBTTBCCCSCEEEEEESSS
T ss_pred CCEECCCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCC-----CC-----CCCCCCCCCCCCEEEEECCCC
T ss_conf 00000001577775277630345310000112332101343001222-----11-----111111111110000003689
Q ss_pred CEEEEEECCCCEEEECC-CCCEEEEEECCCCC-CEEEEEECC-CCCEEEEEECCCCEEEEEC
Q ss_conf 98999958992999938-99468999202486-579999948-9999999982893999995
Q 000602 319 SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR-GIWRCLYDS-LSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 319 ~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~-~V~si~~sp-dg~~lvtgg~Dg~I~iwdl 377 (1398)
.+|++++.|++|++||+ +++.+..+..|... .+..+++.+ ...+|++++.||.|++||+
T Consensus 264 ~~l~s~s~D~~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~s~s~dg~i~vwdl 325 (325)
T d1pgua1 264 QKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYEL 325 (325)
T ss_dssp SEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEET
T ss_pred CEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCEEEEEEECCCCEEEEEECCCEEEEEEC
T ss_conf 99999958993999999999788999954874067699999889999999979999999979
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.4e-31 Score=204.85 Aligned_cols=80 Identities=9% Similarity=0.055 Sum_probs=36.3
Q ss_pred CCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEECCCCEEEEEEC
Q ss_conf 98189999532998899961788199998797433564544301105630001345764489999974089830999972
Q 000602 580 GARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTG 659 (1398)
Q Consensus 580 ~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g 659 (1398)
...+++++|+|++ +||+|+.||+|++|++.+.. ....+.+...+. .|. ..|++|+|+ +++.+|++++
T Consensus 184 ~~~~~~v~~s~dg-~lasgs~Dg~i~iwd~~~~~-------~~~~~~~~~~l~-~h~-~~V~~l~~s---pdg~~l~sgs 250 (393)
T d1sq9a_ 184 SQFATSVDISERG-LIATGFNNGTVQISELSTLR-------PLYNFESQHSMI-NNS-NSIRSVKFS---PQGSLLAIAH 250 (393)
T ss_dssp CCCCCEEEECTTS-EEEEECTTSEEEEEETTTTE-------EEEEEECCC----CCC-CCEEEEEEC---SSTTEEEEEE
T ss_pred CCCEEEEEECCCC-EEEEEECCCCEEEEEECCCC-------CCCCCCCCCCCC-CCC-CEEEECCCC---CCCCEEEEEC
T ss_conf 9867899978999-89999389829998602332-------110000111112-425-638770046---6532011242
Q ss_pred CCCC---EEEEEEECC
Q ss_conf 8963---999999469
Q 000602 660 GDGC---ICYLEYDKD 672 (1398)
Q Consensus 660 ~DG~---i~iw~i~~~ 672 (1398)
.|+. +++|+++.+
T Consensus 251 ~D~t~~~i~lwd~~~g 266 (393)
T d1sq9a_ 251 DSNSFGCITLYETEFG 266 (393)
T ss_dssp EETTEEEEEEEETTTC
T ss_pred CCCCCCEEEECCCCCC
T ss_conf 8988421001035321
|
| >d1pgua1 b.69.4.1 (A:2-326) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=5.2e-31 Score=203.68 Aligned_cols=208 Identities=19% Similarity=0.196 Sum_probs=81.1
Q ss_pred EEECCCCC-CCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE-------CCCCCCEEEEEEEECCCCCCCEE
Q ss_conf 55314688-76899999841389949999988990999995799199998-------34886318999862379888599
Q 000602 125 VQSLPRLS-HWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV-------HSPERCLLYSMKLWGDNLEALRI 196 (1398)
Q Consensus 125 ~~~l~gh~-~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l-------~~~~~~~~~sv~~~~~s~d~~~i 196 (1398)
...+.+|. ..|++++|+|. .++.+|++|+.|++|++||+..+.....+ .......+.++.+ ++++..+
T Consensus 55 ~~~~~gh~~~~v~~v~fsP~-~~g~~lasgs~Dg~i~iWd~~~~~~~~~~~~~~~~~~~~~~~~v~~v~~---s~~~~~l 130 (325)
T d1pgua1 55 VVQFTGHGSSVVTTVKFSPI-KGSQYLCSGDESGKVIVWGWTFDKESNSVEVNVKSEFQVLAGPISDISW---DFEGRRL 130 (325)
T ss_dssp EEEECTTTTSCEEEEEECSS-TTCCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEEEEECCSSCEEEEEE---CTTSSEE
T ss_pred EEEEECCCCCCEEEEEEEEC-CCCCEEEEEECCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCEEEEEE---CCCCCCC
T ss_conf 28990789998899998117-9997999994899779854058862156510025411365673779998---9998822
Q ss_pred EEEEC--CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCE-EEE
Q ss_conf 99979--990999992468766668999987778988876202531356640579999276688899999489999-999
Q 000602 197 ASGTI--YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK-LVS 273 (1398)
Q Consensus 197 asgs~--dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~-LvS 273 (1398)
++++. ++.+.+|+.. +++.+..+.+|...|.+++|+|++.+ +++
T Consensus 131 ~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~h~~~v~~~~~~~~~~~~~~~ 177 (325)
T d1pgua1 131 CVVGEGRDNFGVFISWD---------------------------------SGNSLGEVSGHSQRINACHLKQSRPMRSMT 177 (325)
T ss_dssp EEEECCSSCSEEEEETT---------------------------------TCCEEEECCSCSSCEEEEEECSSSSCEEEE
T ss_pred CEEECCCCCEEEEEEEC---------------------------------CCCCCEEEEECCCCCCCCCCCCCCCCEEEE
T ss_conf 01001244047888502---------------------------------331100120012343211112343206888
Q ss_pred EECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECC---CEEEEEECCCCEEEECC-CCCEEEEEECCCCC
Q ss_conf 978990999995789413888703763048740884479999919---98999958992999938-99468999202486
Q 000602 274 VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEHIGR 349 (1398)
Q Consensus 274 ~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~---~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~ 349 (1398)
++.|+.+++|+....+. .... ....+|...|.+++|+| .++++++.|+.|++||. +++.+..+.+|..
T Consensus 178 ~~~d~~v~~~d~~~~~~-----~~~~--~~~~~~~~~v~~v~~~pd~~~~l~s~~~d~~i~iwd~~~~~~~~~l~~~~~- 249 (325)
T d1pgua1 178 VGDDGSVVFYQGPPFKF-----SASD--RTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQE- 249 (325)
T ss_dssp EETTTEEEEEETTTBEE-----EEEE--CSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCEEEECCBTTB-
T ss_pred EECCCCCCCCCCCCCCC-----CEEC--CCCCCCCCCCEEEEECCCCCEECCCCCCCCCEEEEEECCCCCCCCCCCCCC-
T ss_conf 62111221111221100-----0000--001577775277630345310000112332101343001222111111111-
Q ss_pred CEEEEEEC---CCCCEEEEEECCCCEEEEEC
Q ss_conf 57999994---89999999982893999995
Q 000602 350 GIWRCLYD---SLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 350 ~V~si~~s---pdg~~lvtgg~Dg~I~iwdl 377 (1398)
++.++.|+ |++.+|++++.|+.|++||+
T Consensus 250 ~v~~~~~s~~~~dg~~l~s~s~D~~i~iwd~ 280 (325)
T d1pgua1 250 PVQGGIFALSWLDSQKFATVGADATIRVWDV 280 (325)
T ss_dssp CCCSCEEEEEESSSSEEEEEETTSEEEEEET
T ss_pred CCCCCEEEEECCCCCEEEEEECCCEEEEEEC
T ss_conf 1111000000368999999958993999999
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=4.5e-30 Score=197.86 Aligned_cols=70 Identities=27% Similarity=0.459 Sum_probs=25.8
Q ss_pred ECCCCCEEEEEECCCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 4088447999991998999958992999938-994689992024865799999489999999982893999995
Q 000602 305 YGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 305 ~gh~~~V~~i~~s~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
..|...+....+.+..+++++.|+.+++|+. +++.+..+.++.. .+..+.++ +.++++++.||.|++|++
T Consensus 135 ~~~~~~v~~~~~~~~~~~~~s~d~~i~~~d~~~~~~~~~~~~~~~-~v~~~~~~--~~~l~~~~~dg~i~i~d~ 205 (293)
T d1p22a2 135 VGHRAAVNVVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKR-GIACLQYR--DRLVVSGSSDNTIRLWDI 205 (293)
T ss_dssp CCCSSCEEEEEEETTEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEEE--TTEEEEEETTSCEEEEET
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCEEEECCCCCCEEEEECCCCC-CCCCCCCC--CCEEEEECCCCEEEEEEC
T ss_conf 011354311000002201106998604100788838899715544-53221689--875887658998999866
|
| >d1sq9a_ b.69.4.1 (A:) Antiviral protein Ski8 (Ski8p) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Antiviral protein Ski8 (Ski8p) species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=1.2e-30 Score=201.43 Aligned_cols=44 Identities=16% Similarity=0.231 Sum_probs=21.6
Q ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC-CCCCCCCCCCCC
Q ss_conf 024865799999489999999982893999995-988755324787
Q 000602 345 EHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF-QAFLPGSLESHP 389 (1398)
Q Consensus 345 ~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl-~~~~l~~l~~~~ 389 (1398)
+|.+ .|++++|+|++++|++++.|++|++||+ .++++.++.+|.
T Consensus 287 gH~~-~V~~l~fspd~~~l~S~s~D~~v~vWd~~~g~~~~~l~gH~ 331 (393)
T d1sq9a_ 287 AHSS-WVMSLSFNDSGETLCSAGWDGKLRFWDVKTKERITTLNMHC 331 (393)
T ss_dssp SBSS-CEEEEEECSSSSEEEEEETTSEEEEEETTTTEEEEEEECCG
T ss_pred CCCC-CEEEECCCCCCCEEEEECCCCEEEEEECCCCCEEEEECCCC
T ss_conf 2358-66600138988806987799989999999997999998868
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=2.4e-30 Score=199.61 Aligned_cols=109 Identities=18% Similarity=0.270 Sum_probs=56.9
Q ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECC----------CCEEEEE
Q ss_conf 975199929999818993999956899986432367642021111111346981899995329----------9889996
Q 000602 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFE----------DEVLFCG 598 (1398)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spd----------g~lLatG 598 (1398)
+++++++.+|++++.|+.+++|++.... .+......|..+|++++|+|+ +.+|++|
T Consensus 168 ~~~s~~~~~l~~g~~dg~i~i~d~~~~~--------------~~~~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~sg 233 (287)
T d1pgua2 168 ISISPSETYIAAGDVMGKILLYDLQSRE--------------VKTSRWAFRTSKINAISWKPAEKGANEEEIEEDLVATG 233 (287)
T ss_dssp EEECTTSSEEEEEETTSCEEEEETTTTE--------------EEECCSCCCSSCEEEEEECCCC------CCSCCEEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEECCCC--------------CCCCCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEEEE
T ss_conf 9951676521101111110000002332--------------11000111111110000013654100126788702766
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 17881999987974335645443011056300013457644899999740898309999728963999999
Q 000602 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1398)
Q Consensus 599 s~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i 669 (1398)
+.|++|++|++.+.. ..... ..+|. ..|+++.|.+ + ..|+|+|.||++++|++
T Consensus 234 s~D~~i~iw~~~~~~------------~~~~~-~~~h~-~~V~~v~~~~---~-~~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 234 SLDTNIFIYSVKRPM------------KIIKA-LNAHK-DGVNNLLWET---P-STLVSSGADACIKRWNV 286 (287)
T ss_dssp ETTSCEEEEESSCTT------------CCEEE-TTSST-TCEEEEEEEE---T-TEEEEEETTSCEEEEEE
T ss_pred CCCCEEEEEECCCCC------------EEEEE-ECCCC-CCEEEEEECC---C-CEEEEEECCCEEEEEEE
T ss_conf 499959998889997------------58999-27878-9858999989---9-98999979992999997
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=100.00 E-value=3.7e-30 Score=198.39 Aligned_cols=314 Identities=11% Similarity=0.018 Sum_probs=184.5
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC---CCEEEE
Q ss_conf 57999927668889999948999999997899099999578941388870376304874088447999991---998999
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT---DSFIIT 323 (1398)
Q Consensus 247 ~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s---~~~lvs 323 (1398)
+.+....+|++.|++|+|+|++++|++++.|++|++||+..... ...+ ....+|...|.+++|+ +.+|++
T Consensus 2 ~~v~~~~~h~d~I~~l~fsp~~~~L~s~s~Dg~v~iwd~~~~~~-----~~~~--~~~~~h~~~V~~v~f~~~~~~~l~s 74 (342)
T d1yfqa_ 2 QIVQIEQAPKDYISDIKIIPSKSLLLITSWDGSLTVYKFDIQAK-----NVDL--LQSLRYKHPLLCCNFIDNTDLQIYV 74 (342)
T ss_dssp EEEECSSCCSSCEEEEEEEGGGTEEEEEETTSEEEEEEEETTTT-----EEEE--EEEEECSSCEEEEEEEESSSEEEEE
T ss_pred CEEECCCCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCC-----CEEE--EEECCCCCCEEEEEEECCCCCEEEE
T ss_conf 75976889989788899958999999997999299997569986-----3689--8855899988999995899978998
Q ss_pred EECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEE
Q ss_conf 958992999938-9946899920248657999994899999999828939999959887553247876410168730799
Q 000602 324 AGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFS 402 (1398)
Q Consensus 324 gs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~ 402 (1398)
|+.|+++++|+. ..........+.........+.++...+++++.|+.+++|+++.....
T Consensus 75 g~~d~~v~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~wd~~~~~~~------------------- 135 (342)
T d1yfqa_ 75 GTVQGEILKVDLIGSPSFQALTNNEANLGICRICKYGDDKLIAASWDGLIEVIDPRNYGDG------------------- 135 (342)
T ss_dssp EETTSCEEEECSSSSSSEEECBSCCCCSCEEEEEEETTTEEEEEETTSEEEEECHHHHTTB-------------------
T ss_pred CCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCC-------------------
T ss_conf 1265311454204432000001111111111111111111111012221110202344433-------------------
Q ss_pred EEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 65279754234116789747999991199099999089389999503888504897852489639998506899988689
Q 000602 403 IKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCG 482 (1398)
Q Consensus 403 ~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~ 482 (1398)
.......... . .........+. +
T Consensus 136 -----------------------------~~~~~~~~~~----------~--------~~~~~~~~~~~----------~ 158 (342)
T d1yfqa_ 136 -----------------------------VIAVKNLNSN----------N--------TKVKNKIFTMD----------T 158 (342)
T ss_dssp -----------------------------CEEEEESCSS----------S--------SSSCCCEEEEE----------E
T ss_pred -----------------------------EEEECCCCCC----------C--------CCCEEEEEEEE----------C
T ss_conf -----------------------------0230002430----------0--------12000001000----------1
Q ss_pred CCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCC
Q ss_conf 99699999289979999971785465113566640475341668999751999299998189939999568999864323
Q 000602 483 IDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYE 562 (1398)
Q Consensus 483 ~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~ 562 (1398)
....+++++.|+.|++|++........... .......... ...++.++..+++++.||.+.+|............
T Consensus 159 ~~~~~~~~~~d~~i~~~~~~~~~~~~~~~~----~~~~~~~~~~-~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~ 233 (342)
T d1yfqa_ 159 NSSRLIVGMNNSQVQWFRLPLCEDDNGTIE----ESGLKYQIRD-VALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSS 233 (342)
T ss_dssp CSSEEEEEESTTEEEEEESSCCTTCCCEEE----ECSCSSCEEE-EEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCT
T ss_pred CCCCEEEECCCCCEEEEECCCCCCCCEEEE----ECCCCCCEEE-EEEECCCCCEEEEECCCCEEEEEEECCCCCEEECC
T ss_conf 687024651798478876056763411121----0254221014-67636999878865489959999805986401112
Q ss_pred CCCCCEEEEEE--EECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCE
Q ss_conf 67642021111--1113469818999953299889996178819999879743356454430110563000134576448
Q 000602 563 SSKTNNVFLVA--EFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTV 640 (1398)
Q Consensus 563 ~~~~~~l~l~~--~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~V 640 (1398)
......... .....|...+++++|+|++++||+|+.||+|++||+.+.. ++ ..+...|. ..+
T Consensus 234 --~~~~~~~~~~~~~~~~~~~~v~~l~~sp~~~~lasg~~Dg~v~vWD~~~~~----------~l---~~~~~~~~-~~~ 297 (342)
T d1yfqa_ 234 --KRFAFRCHRLNLKDTNLAYPVNSIEFSPRHKFLYTAGSDGIISCWNLQTRK----------KI---KNFAKFNE-DSV 297 (342)
T ss_dssp --TCEEEECCCCCTTCCSSCCCEEEEEECTTTCCEEEEETTSCEEEEETTTTE----------EE---EECCCCSS-SEE
T ss_pred --CCCEEEEEEECCCCCCCCCCCEEEEECCCCCEEEEECCCCEEEEEECCCCC----------EE---EEECCCCC-CEE
T ss_conf --351256555314777623543159966984479998799989999999894----------98---87058999-879
Q ss_pred EEEEEEEECCCCEEEEEECCCCCEEEEEE
Q ss_conf 99999740898309999728963999999
Q 000602 641 STLSVAKLRSNQTEIRSTGGDGCICYLEY 669 (1398)
Q Consensus 641 tsI~~~~~~~~~~~l~S~g~DG~i~iw~i 669 (1398)
++|.+ ++..+++++.|+.+++|..
T Consensus 298 --~~~s~---~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 298 --VKIAC---SDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp --EEEEE---CSSEEEEEEECTHHHHCSS
T ss_pred --EEEEE---CCCEEEEEECCCCEEEEEE
T ss_conf --99994---7999999991992788301
|
| >d1p22a2 b.69.4.1 (A:253-545) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: F-box/WD-repeat protein 1 (beta-TRCP1) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.97 E-value=3e-27 Score=180.41 Aligned_cols=26 Identities=12% Similarity=0.163 Sum_probs=9.3
Q ss_pred EEEEEE-CCCEEEEECCCCEEEEEEEE
Q ss_conf 999980-89199998899938879986
Q 000602 37 FLLAGS-GSQVLLYDLEAGTLIRPFQV 62 (1398)
Q Consensus 37 lLaaG~-dg~I~Iwd~~tg~~i~~~~~ 62 (1398)
+|++|+ |++|+|||+.+++++.++++
T Consensus 27 ~l~sgs~Dg~i~vWd~~~~~~~~~l~~ 53 (293)
T d1p22a2 27 KIVSGLRDNTIKIWDKNTLECKRILTG 53 (293)
T ss_dssp EEEEEESSSCEEEEESSSCCEEEEECC
T ss_pred EEEEEECCCEEEEEECCCCCEEEEEEC
T ss_conf 999992899399999999919999926
|
| >d1yfqa_ b.69.4.2 (A:) Cell cycle arrest protein BUB3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: Cell cycle arrest protein BUB3 domain: Cell cycle arrest protein BUB3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=2e-28 Score=187.75 Aligned_cols=291 Identities=14% Similarity=0.067 Sum_probs=116.2
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEE---EEEECCCEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 036349999972189889988999980-891999988999388799---8660834899997103464589875210099
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPF---QVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~---~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
|...|++|+|+ |+ +++||+|+ |++|+|||+.++.....+ ..|.. +|.+++|+ |++. .++
T Consensus 10 h~d~I~~l~fs--p~----~~~L~s~s~Dg~v~iwd~~~~~~~~~~~~~~~h~~-~V~~v~f~-------~~~~---~~l 72 (342)
T d1yfqa_ 10 PKDYISDIKII--PS----KSLLLITSWDGSLTVYKFDIQAKNVDLLQSLRYKH-PLLCCNFI-------DNTD---LQI 72 (342)
T ss_dssp CSSCEEEEEEE--GG----GTEEEEEETTSEEEEEEEETTTTEEEEEEEEECSS-CEEEEEEE-------ESSS---EEE
T ss_pred CCCCEEEEEEE--CC----CCEEEEEECCCEEEEEECCCCCCCEEEEEECCCCC-CEEEEEEE-------CCCC---CEE
T ss_conf 98978889995--89----99999997999299997569986368988558999-88999995-------8999---789
Q ss_pred EEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEE-
Q ss_conf 9994-99699999147889999888863211115553146887689999984138994999998899099999579919-
Q 000602 92 ALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSI- 169 (1398)
Q Consensus 92 a~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~- 169 (1398)
++++ |+.|++|++.... ........+........+.+ +...+++++.++++++||+..+..
T Consensus 73 ~sg~~d~~v~~w~~~~~~--------------~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~wd~~~~~~~ 135 (342)
T d1yfqa_ 73 YVGTVQGEILKVDLIGSP--------------SFQALTNNEANLGICRICKY---GDDKLIAASWDGLIEVIDPRNYGDG 135 (342)
T ss_dssp EEEETTSCEEEECSSSSS--------------SEEECBSCCCCSCEEEEEEE---TTTEEEEEETTSEEEEECHHHHTTB
T ss_pred EECCCCCCEEEEECCCCC--------------CCCCCCCCCCCCCCCCCCCC---CCCCCCCCCCCCCCCEEECCCCCCC
T ss_conf 981265311454204432--------------00000111111111111111---1111111012221110202344433
Q ss_pred ---EEEECCCC---CCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCC
Q ss_conf ---99983488---631899986237988859999979990999992468766668999987778988876202531356
Q 000602 170 ---ILEVHSPE---RCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQ 243 (1398)
Q Consensus 170 ---~~~l~~~~---~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~ 243 (1398)
........ ....+.+ .+....+++++.|+.|++|++....
T Consensus 136 ~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~d~~i~~~~~~~~~----------------------------- 181 (342)
T d1yfqa_ 136 VIAVKNLNSNNTKVKNKIFTM-----DTNSSRLIVGMNNSQVQWFRLPLCE----------------------------- 181 (342)
T ss_dssp CEEEEESCSSSSSSCCCEEEE-----EECSSEEEEEESTTEEEEEESSCCT-----------------------------
T ss_pred EEEECCCCCCCCCCEEEEEEE-----ECCCCCEEEECCCCCEEEEECCCCC-----------------------------
T ss_conf 023000243001200000100-----0168702465179847887605676-----------------------------
Q ss_pred CCEEEEEEEECCCCCEEEEEECC-CCCEEEEEECCCEEEEEECCCCCCCCCCC-CEEEEE----EEEECCCCCEEEEEEC
Q ss_conf 64057999927668889999948-99999999789909999957894138887-037630----4874088447999991
Q 000602 244 HTAVNLFRLVGHEGSIFRIEWSS-CGSKLVSVSDDRSARIWEVRAEYWKDSDS-IEEVGS----SVLYGHNARVWDCCLT 317 (1398)
Q Consensus 244 ~~~~~i~~l~gH~~~I~~iafsp-dg~~LvS~s~Dg~I~iWd~~~~~~~~~~~-~~~i~~----~~~~gh~~~V~~i~~s 317 (1398)
..........+...+....+.+ ++..+++++.|+.+.+|+........... ...... ....+|...+.+++|+
T Consensus 182 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~dg~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~l~~s 260 (342)
T d1yfqa_ 182 -DDNGTIEESGLKYQIRDVALLPKEQEGYACSSIDGRVAVEFFDDQGDDYNSSKRFAFRCHRLNLKDTNLAYPVNSIEFS 260 (342)
T ss_dssp -TCCCEEEECSCSSCEEEEEECSGGGCEEEEEETTSEEEEEECCTTCCSTTCTTCEEEECCCCCTTCCSSCCCEEEEEEC
T ss_pred -CCCEEEEECCCCCCEEEEEEECCCCCEEEEECCCCEEEEEEECCCCCEEECCCCCEEEEEEECCCCCCCCCCCEEEEEC
T ss_conf -3411121025422101467636999878865489959999805986401112351256555314777623543159966
Q ss_pred --CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf --998999958992999938-994689992024865799999489999999982893999995
Q 000602 318 --DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 318 --~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
+++|++|+.||.|++||+ +++.+..+..+.. +..++|+|+++++++++.|+.+++|..
T Consensus 261 p~~~~lasg~~Dg~v~vWD~~~~~~l~~~~~~~~--~~~~~~s~~~~~l~~a~sdd~~~~~~~ 321 (342)
T d1yfqa_ 261 PRHKFLYTAGSDGIISCWNLQTRKKIKNFAKFNE--DSVVKIACSDNILCLATSDDTFKTNAA 321 (342)
T ss_dssp TTTCCEEEEETTSCEEEEETTTTEEEEECCCCSS--SEEEEEEECSSEEEEEEECTHHHHCSS
T ss_pred CCCCEEEEECCCCEEEEEECCCCCEEEEECCCCC--CEEEEEEECCCEEEEEECCCCEEEEEE
T ss_conf 9844799987999899999998949887058999--879999947999999991992788301
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.97 E-value=1.9e-28 Score=187.82 Aligned_cols=167 Identities=10% Similarity=-0.042 Sum_probs=87.5
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEECCC--EEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEE
Q ss_conf 6887689999984138994999998899--09999957991999983488631899986237988859999979990999
Q 000602 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDN--SIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIV 207 (1398)
Q Consensus 130 gh~~~V~~v~fsp~~~dg~~Latgs~Dg--~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~i 207 (1398)
+|...|.+++|+| |++.|++++.+. .|++||+.+++... +..+ ...+..+.+ +|++.++++++.++.+++
T Consensus 40 ~~~~~v~~~~~sp---Dg~~l~~~~~~~g~~v~v~d~~~~~~~~-~~~~-~~~v~~~~~---spdg~~l~~~~~~~~~~~ 111 (360)
T d1k32a3 40 PEPLRIRYVRRGG---DTKVAFIHGTREGDFLGIYDYRTGKAEK-FEEN-LGNVFAMGV---DRNGKFAVVANDRFEIMT 111 (360)
T ss_dssp SCCSCEEEEEECS---SSEEEEEEEETTEEEEEEEETTTCCEEE-CCCC-CCSEEEEEE---CTTSSEEEEEETTSEEEE
T ss_pred CCCCCEEEEEECC---CCCEEEEEECCCCCEEEEEECCCCCEEE-EECC-CCEEEEEEE---CCCCCCCCEECCCCCCCC
T ss_conf 6999888899989---9999999992899899999899994887-5089-712774121---145432100011111000
Q ss_pred EECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 99246876666899998777898887620253135664057999927668889999948999999997899099999578
Q 000602 208 WKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 208 Wd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~ 287 (1398)
|+.. ..+....+..|...+.+++|+|++++|+.+..+...
T Consensus 112 ~~~~---------------------------------~~~~~~~~~~~~~~~~~~~~spdg~~la~~~~~~~~------- 151 (360)
T d1k32a3 112 VDLE---------------------------------TGKPTVIERSREAMITDFTISDNSRFIAYGFPLKHG------- 151 (360)
T ss_dssp EETT---------------------------------TCCEEEEEECSSSCCCCEEECTTSCEEEEEEEECSS-------
T ss_pred CCCC---------------------------------CCCEEEEEECCCCCCCCHHHCCCEEEEEEECCCCCC-------
T ss_conf 0012---------------------------------221000000135520230121322566521233121-------
Q ss_pred CCCCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 94138887037630487408844799999199899995899299993899468999202486579999948999999998
Q 000602 288 EYWKDSDSIEEVGSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1398)
Q Consensus 288 ~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~~~lvsgs~Dg~i~iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg 367 (1398)
. +.+..++.+++|+........+..+.. .+..++|+|++++|++++
T Consensus 152 --~-------------------------------~~~~~~~~~~v~d~~~~~~~~~~~~~~-~~~~~~~spdg~~l~~~s 197 (360)
T d1k32a3 152 --E-------------------------------TDGYVMQAIHVYDMEGRKIFAATTENS-HDYAPAFDADSKNLYYLS 197 (360)
T ss_dssp --T-------------------------------TCSCCEEEEEEEETTTTEEEECSCSSS-BEEEEEECTTSCEEEEEE
T ss_pred --C-------------------------------EEECCCCCEEEECCCCCCEEEECCCCC-CCCCCCCCCCCCEEEEEE
T ss_conf --1-------------------------------000256542663045571353035432-211001257799999995
Q ss_pred CCCCEEEEECC
Q ss_conf 28939999959
Q 000602 368 FDSAIKVHQFQ 378 (1398)
Q Consensus 368 ~Dg~I~iwdl~ 378 (1398)
.|+.+++|+..
T Consensus 198 ~~~~~~~~d~~ 208 (360)
T d1k32a3 198 YRSLDPSPDRV 208 (360)
T ss_dssp SCCCCCEECSS
T ss_pred CCCCEECCCCC
T ss_conf 99855753335
|
| >d1pgua2 b.69.4.1 (A:327-613) Actin interacting protein 1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: WD40 repeat-like family: WD40-repeat domain: Actin interacting protein 1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.97 E-value=8.2e-28 Score=183.91 Aligned_cols=112 Identities=15% Similarity=0.157 Sum_probs=53.4
Q ss_pred CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECC------------CEEE
Q ss_conf 6688899999489999999978990999995789413888703763048740884479999919------------9899
Q 000602 255 HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD------------SFII 322 (1398)
Q Consensus 255 H~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~------------~~lv 322 (1398)
|.+.+.+++|+|++.+|++++.|+.|++||+.++.. .. ..+.+|..+|.+++|++ .+++
T Consensus 161 ~~~~v~~~~~s~~~~~l~~g~~dg~i~i~d~~~~~~-----~~----~~~~~h~~~v~~~~~~p~~~~~~~~~~~~~~l~ 231 (287)
T d1pgua2 161 LRAKPSYISISPSETYIAAGDVMGKILLYDLQSREV-----KT----SRWAFRTSKINAISWKPAEKGANEEEIEEDLVA 231 (287)
T ss_dssp CSSCEEEEEECTTSSEEEEEETTSCEEEEETTTTEE-----EE----CCSCCCSSCEEEEEECCCC------CCSCCEEE
T ss_pred CCCCEEEEEECCCCCCCCCCCCCCCCCCEEECCCCC-----CC----CCCCCCCCCCCEEEECCCCCCCCCCCCCCCEEE
T ss_conf 478536999516765211011111100000023321-----10----001111111100000136541001267887027
Q ss_pred EEECCCCEEEECC-C-CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 9958992999938-9-94689992024865799999489999999982893999995
Q 000602 323 TAGEDCTCRVWGS-D-GKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 323 sgs~Dg~i~iWd~-~-g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
+++.|+++++|++ . .+.+..+.+|.. .|++++|+|++ .+++++.|+.|++|++
T Consensus 232 sgs~D~~i~iw~~~~~~~~~~~~~~h~~-~V~~v~~~~~~-~l~s~g~D~~v~iW~i 286 (287)
T d1pgua2 232 TGSLDTNIFIYSVKRPMKIIKALNAHKD-GVNNLLWETPS-TLVSSGADACIKRWNV 286 (287)
T ss_dssp EEETTSCEEEEESSCTTCCEEETTSSTT-CEEEEEEEETT-EEEEEETTSCEEEEEE
T ss_pred EECCCCEEEEEECCCCCEEEEEECCCCC-CEEEEEECCCC-EEEEEECCCEEEEEEE
T ss_conf 6649995999888999758999278789-85899998999-8999979992999997
|
| >d1k32a3 b.69.9.1 (A:320-679) Tricorn protease domain 2 {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Tricorn protease domain 2 family: Tricorn protease domain 2 domain: Tricorn protease domain 2 species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=99.96 E-value=1.8e-27 Score=181.78 Aligned_cols=191 Identities=12% Similarity=0.088 Sum_probs=135.7
Q ss_pred EEEEEEECC-CCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-C--
Q ss_conf 999997218-988998899998089199998899938879986608348999971034645898752100999994-9--
Q 000602 21 SALCFVHLP-SHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E-- 96 (1398)
Q Consensus 21 taiafs~~p-d~~~~g~lLaaG~dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d-- 96 (1398)
.+-.|| | | |+++|.++.+.|++||.+++..+.. .| ..+|.+++|+ ||| ..|++.+ +
T Consensus 6 ~~~~fS--P~d----G~~~a~~~~g~v~v~d~~~~~~~~~--~~-~~~v~~~~~s-------pDg----~~l~~~~~~~g 65 (360)
T d1k32a3 6 FAEDFS--PLD----GDLIAFVSRGQAFIQDVSGTYVLKV--PE-PLRIRYVRRG-------GDT----KVAFIHGTREG 65 (360)
T ss_dssp GEEEEE--ECG----GGCEEEEETTEEEEECTTSSBEEEC--SC-CSCEEEEEEC-------SSS----EEEEEEEETTE
T ss_pred HCCCCC--CCC----CCEEEEEECCEEEEEECCCCCEEEC--CC-CCCEEEEEEC-------CCC----CEEEEEECCCC
T ss_conf 005146--889----9999999899699998999948991--69-9988889998-------999----99999992899
Q ss_pred CEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCC
Q ss_conf 96999991478899998888632111155531468876899999841389949999988990999995799199998348
Q 000602 97 KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSP 176 (1398)
Q Consensus 97 ~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~ 176 (1398)
..|++|+++.+ ....+..|...|.+++|+| ++++|++++.++.+++|++.+++....+..+
T Consensus 66 ~~v~v~d~~~~----------------~~~~~~~~~~~v~~~~~sp---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (360)
T d1k32a3 66 DFLGIYDYRTG----------------KAEKFEENLGNVFAMGVDR---NGKFAVVANDRFEIMTVDLETGKPTVIERSR 126 (360)
T ss_dssp EEEEEEETTTC----------------CEEECCCCCCSEEEEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECS
T ss_pred CEEEEEECCCC----------------CEEEEECCCCEEEEEEECC---CCCCCCEECCCCCCCCCCCCCCCEEEEEECC
T ss_conf 89999989999----------------4887508971277412114---5432100011111000001222100000013
Q ss_pred CCCEEEEEEEECCCCCCCEEEEEE----------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCE
Q ss_conf 863189998623798885999997----------9990999992468766668999987778988876202531356640
Q 000602 177 ERCLLYSMKLWGDNLEALRIASGT----------IYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTA 246 (1398)
Q Consensus 177 ~~~~~~sv~~~~~s~d~~~iasgs----------~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~ 246 (1398)
.. ...++.+ ++++.+|+.+. .++.+++|+.. .+
T Consensus 127 ~~-~~~~~~~---spdg~~la~~~~~~~~~~~~~~~~~~~v~d~~---------------------------------~~ 169 (360)
T d1k32a3 127 EA-MITDFTI---SDNSRFIAYGFPLKHGETDGYVMQAIHVYDME---------------------------------GR 169 (360)
T ss_dssp SS-CCCCEEE---CTTSCEEEEEEEECSSTTCSCCEEEEEEEETT---------------------------------TT
T ss_pred CC-CCCCHHH---CCCEEEEEEECCCCCCCEEECCCCCEEEECCC---------------------------------CC
T ss_conf 55-2023012---13225665212331211000256542663045---------------------------------57
Q ss_pred EEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 579999276688899999489999999978990999995789
Q 000602 247 VNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAE 288 (1398)
Q Consensus 247 ~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~ 288 (1398)
+. ..+..+...+..++|+|++++|++++.++.+++|+....
T Consensus 170 ~~-~~~~~~~~~~~~~~~spdg~~l~~~s~~~~~~~~d~~~~ 210 (360)
T d1k32a3 170 KI-FAATTENSHDYAPAFDADSKNLYYLSYRSLDPSPDRVVL 210 (360)
T ss_dssp EE-EECSCSSSBEEEEEECTTSCEEEEEESCCCCCEECSSSS
T ss_pred CE-EEECCCCCCCCCCCCCCCCCEEEEEECCCCEECCCCCCC
T ss_conf 13-530354322110012577999999959985575333544
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.2e-25 Score=166.58 Aligned_cols=29 Identities=14% Similarity=0.151 Sum_probs=12.2
Q ss_pred CCEEEEECCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 9199998899938879986608348999971
Q 000602 44 SQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 44 g~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs 74 (1398)
+.|+|||+.+++++.++..+. .+++++|+
T Consensus 42 g~v~vwD~~t~~~~~~l~~g~--~~~~vafS 70 (426)
T d1hzua2 42 GQIALVDGDSKKIVKVIDTGY--AVHISRMS 70 (426)
T ss_dssp TEEEEEETTTCSEEEEEECCS--SEEEEEEC
T ss_pred CEEEEEECCCCCEEEEEECCC--CEEEEEEC
T ss_conf 979999999995999996899--80389998
|
| >d1hzua2 b.70.2.1 (A:118-543) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Pseudomonas aeruginosa [TaxId: 287]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Pseudomonas aeruginosa [TaxId: 287]
Probab=99.96 E-value=5.1e-25 Score=166.61 Aligned_cols=44 Identities=11% Similarity=0.079 Sum_probs=20.0
Q ss_pred CEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 405799992766888999994899999999789909999957894
Q 000602 245 TAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 245 ~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~ 289 (1398)
+++.+.++..|. .+.+++|+|||+++++++.|+++++||+.+++
T Consensus 51 t~~~~~~l~~g~-~~~~vafSPDGk~l~~~~~d~~v~vwd~~t~~ 94 (426)
T d1hzua2 51 SKKIVKVIDTGY-AVHISRMSASGRYLLVIGRDARIDMIDLWAKE 94 (426)
T ss_dssp TCSEEEEEECCS-SEEEEEECTTSCEEEEEETTSEEEEEETTSSS
T ss_pred CCCEEEEEECCC-CEEEEEECCCCCEEEEEECCCCEEEEECCCCC
T ss_conf 995999996899-80389998999999999589988999756886
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.96 E-value=5.8e-25 Score=166.29 Aligned_cols=192 Identities=11% Similarity=-0.083 Sum_probs=101.5
Q ss_pred EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCC
Q ss_conf 99999889909999957991999983488631899986237988859999979990999992468766668999987778
Q 000602 149 SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAH 228 (1398)
Q Consensus 149 ~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~ 228 (1398)
++++.+.+++|.+||..+++++..+..+. ..+.++| +||+.++++++.|+.+.+||+.+++..
T Consensus 34 ~~v~~~d~g~v~v~D~~t~~v~~~~~~g~--~~~~v~f---SpDG~~l~~~s~dg~v~~~d~~t~~~~------------ 96 (432)
T d1qksa2 34 FSVTLRDAGQIALIDGSTYEIKTVLDTGY--AVHISRL---SASGRYLFVIGRDGKVNMIDLWMKEPT------------ 96 (432)
T ss_dssp EEEEETTTTEEEEEETTTCCEEEEEECSS--CEEEEEE---CTTSCEEEEEETTSEEEEEETTSSSCC------------
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECCC--CEEEEEE---CCCCCEEEEECCCCCEEEEEEECCCCE------------
T ss_conf 99997699979999899983999973799--7137998---899999999828999789981089812------------
Q ss_pred CCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEE-EEEECCCEEEEEECCCCCCCCCCCCEEEEE------
Q ss_conf 9888762025313566405799992766888999994899999-999789909999957894138887037630------
Q 000602 229 GSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL-VSVSDDRSARIWEVRAEYWKDSDSIEEVGS------ 301 (1398)
Q Consensus 229 ~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~L-vS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~------ 301 (1398)
....+....+|.+.+.+..|+|||++| ++++.++++++||..+++. ...+..
T Consensus 97 ----------------~~~~i~~~~~~~~~~~s~~~SpDG~~l~vs~~~~~~v~i~d~~t~~~-----~~~~~~~~~~~~ 155 (432)
T d1qksa2 97 ----------------TVAEIKIGSEARSIETSKMEGWEDKYAIAGAYWPPQYVIMDGETLEP-----KKIQSTRGMTYD 155 (432)
T ss_dssp ----------------EEEEEECCSEEEEEEECCSTTCTTTEEEEEEEETTEEEEEETTTCCE-----EEEEECCEECTT
T ss_pred ----------------EEEEEECCCCCCCEEEECCCCCCCCEEEEECCCCCEEEEEECCCCCC-----EEEECCCCCCCC
T ss_conf ----------------88998448898776984321888888999817898279990765542-----254024776435
Q ss_pred EEEECCCCCEEEEEEC--CC-EEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEE
Q ss_conf 4874088447999991--99-8999958992999938-994689992024865799999489999999982-89399999
Q 000602 302 SVLYGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQ 376 (1398)
Q Consensus 302 ~~~~gh~~~V~~i~~s--~~-~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~-Dg~I~iwd 376 (1398)
.....+......+.++ +. ++++...++.+.+|+. +.+.......+.++.+..++|+|+++++++++. ++.+.+++
T Consensus 156 ~~~~~~~~~~~~v~~s~dg~~~~vs~~~~~~i~~~d~~~~~~~~~~~i~~g~~~~~~~~spdg~~~~va~~~~~~v~v~d 235 (432)
T d1qksa2 156 EQEYHPEPRVAAILASHYRPEFIVNVKETGKILLVDYTDLNNLKTTEISAERFLHDGGLDGSHRYFITAANARNKLVVID 235 (432)
T ss_dssp TCCEESCCCEEEEEECSSSSEEEEEETTTTEEEEEETTCSSEEEEEEEECCSSEEEEEECTTSCEEEEEEGGGTEEEEEE
T ss_pred CEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEEECCCCCCCEEEEECCCCCCCCCEECCCCCEEEEECCCCCEEEEEE
T ss_conf 22016888505899878999899998168829999843787522799833675426538898879999516663677761
Q ss_pred CC
Q ss_conf 59
Q 000602 377 FQ 378 (1398)
Q Consensus 377 l~ 378 (1398)
..
T Consensus 236 ~~ 237 (432)
T d1qksa2 236 TK 237 (432)
T ss_dssp TT
T ss_pred CC
T ss_conf 44
|
| >d1qksa2 b.70.2.1 (A:136-567) C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase family: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase domain: C-terminal (heme d1) domain of cytochrome cd1-nitrite reductase species: Paracoccus denitrificans [TaxId: 266]
Probab=99.95 E-value=2.6e-23 Score=156.08 Aligned_cols=105 Identities=9% Similarity=-0.062 Sum_probs=50.2
Q ss_pred CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 89199998899938879986608348999971034645898752100999994-99699999147889999888863211
Q 000602 43 GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVN 121 (1398)
Q Consensus 43 dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~ 121 (1398)
++.|.|||.++++++..+..++ .+++++|+ ||| +++++++ |+++++||+.+.... .
T Consensus 41 ~g~v~v~D~~t~~v~~~~~~g~--~~~~v~fS-------pDG----~~l~~~s~dg~v~~~d~~t~~~~----------~ 97 (432)
T d1qksa2 41 AGQIALIDGSTYEIKTVLDTGY--AVHISRLS-------ASG----RYLFVIGRDGKVNMIDLWMKEPT----------T 97 (432)
T ss_dssp TTEEEEEETTTCCEEEEEECSS--CEEEEEEC-------TTS----CEEEEEETTSEEEEEETTSSSCC----------E
T ss_pred CCEEEEEECCCCCEEEEEECCC--CEEEEEEC-------CCC----CEEEEECCCCCEEEEEEECCCCE----------E
T ss_conf 9979999899983999973799--71379988-------999----99999828999789981089812----------8
Q ss_pred CEEEEECCCCCCCEEEEEEEEECCCCCEE-EEEECCCEEEEEECCCCEEEEEE
Q ss_conf 11555314688768999998413899499-99988990999995799199998
Q 000602 122 LSLVQSLPRLSHWVFDVCFLKVCNGNRSL-AIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 122 ~~~~~~l~gh~~~V~~v~fsp~~~dg~~L-atgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
...+....+|.+.+.+..|+| ||++| ++++.+++|++||..+++.+..+
T Consensus 98 ~~~i~~~~~~~~~~~s~~~Sp---DG~~l~vs~~~~~~v~i~d~~t~~~~~~~ 147 (432)
T d1qksa2 98 VAEIKIGSEARSIETSKMEGW---EDKYAIAGAYWPPQYVIMDGETLEPKKIQ 147 (432)
T ss_dssp EEEEECCSEEEEEEECCSTTC---TTTEEEEEEEETTEEEEEETTTCCEEEEE
T ss_pred EEEEECCCCCCCEEEECCCCC---CCCEEEEECCCCCEEEEEECCCCCCEEEE
T ss_conf 899844889877698432188---88889998178982799907655422540
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.94 E-value=1.5e-21 Score=145.14 Aligned_cols=260 Identities=11% Similarity=0.038 Sum_probs=189.3
Q ss_pred EEEEEECCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCC
Q ss_conf 99998089199998899938879986608348999971034645898752100999994-99699999147889999888
Q 000602 37 FLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQ 115 (1398)
Q Consensus 37 lLaaG~dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~ 115 (1398)
|++...+++|.|||+++++.++++... ..+++++|+ |+|+ .++++.. ++.|++||+.+
T Consensus 5 yV~~~~~~~v~v~D~~t~~~~~~i~~g--~~p~~va~s-------pdG~---~l~v~~~~~~~i~v~d~~t--------- 63 (301)
T d1l0qa2 5 YIANSESDNISVIDVTSNKVTATIPVG--SNPMGAVIS-------PDGT---KVYVANAHSNDVSIIDTAT--------- 63 (301)
T ss_dssp EEEETTTTEEEEEETTTTEEEEEEECS--SSEEEEEEC-------TTSS---EEEEEEGGGTEEEEEETTT---------
T ss_pred EEEECCCCEEEEEECCCCEEEEEEECC--CCCEEEEEE-------CCCC---EEEEEECCCCEEEEEECCC---------
T ss_conf 999789998999999999599999889--983699992-------8989---9999978999899999998---------
Q ss_pred CCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEE-EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCC
Q ss_conf 863211115553146887689999984138994999-9988990999995799199998348863189998623798885
Q 000602 116 PETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA-IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL 194 (1398)
Q Consensus 116 ~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~La-tgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~ 194 (1398)
.+.++.+..+. .+..+.|++ ++..++ ++..++.+.+|+..+++....+..+.. ...+.+ ++++.
T Consensus 64 ------~~~~~~~~~~~-~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~dg~ 128 (301)
T d1l0qa2 64 ------NNVIATVPAGS-SPQGVAVSP---DGKQVYVTNMASSTLSVIDTTSNTVAGTVKTGKS--PLGLAL---SPDGK 128 (301)
T ss_dssp ------TEEEEEEECSS-SEEEEEECT---TSSEEEEEETTTTEEEEEETTTTEEEEEEECSSS--EEEEEE---CTTSS
T ss_pred ------CCEEEEEECCC-CCCCCCCCC---CCCCCCCCCCCCCEEEECCCCCCEEEEECCCCCC--CEEEEE---ECCCC
T ss_conf ------94103200024-643110001---1111111111110011001243024320244444--237876---05897
Q ss_pred EEE-EEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 999-9979990999992468766668999987778988876202531356640579999276688899999489999999
Q 000602 195 RIA-SGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 195 ~ia-sgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS 273 (1398)
.++ ++..++.+.+|+.. .......+.. ...+..++++|++..+++
T Consensus 129 ~~~~~~~~~~~~~~~~~~---------------------------------~~~~~~~~~~-~~~~~~~~~~~~~~~~~~ 174 (301)
T d1l0qa2 129 KLYVTNNGDKTVSVINTV---------------------------------TKAVINTVSV-GRSPKGIAVTPDGTKVYV 174 (301)
T ss_dssp EEEEEETTTTEEEEEETT---------------------------------TTEEEEEEEC-CSSEEEEEECTTSSEEEE
T ss_pred EEEEEECCCCCEEEEECC---------------------------------CCCEEEECCC-CCCCEEEEEECCCCCEEE
T ss_conf 155420111100110001---------------------------------4630353156-788428886046540131
Q ss_pred EECC-CEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEE---CCCCEEEECC-CCCEEEEEECC
Q ss_conf 9789-9099999578941388870376304874088447999991--99899995---8992999938-99468999202
Q 000602 274 VSDD-RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAG---EDCTCRVWGS-DGKQLKMIKEH 346 (1398)
Q Consensus 274 ~s~D-g~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs---~Dg~i~iWd~-~g~~l~~l~~h 346 (1398)
++.+ +.+.+|+...... . ........+..++++ +..++.+. .++++.+||. +++.+..+..+
T Consensus 175 ~~~~~~~~~~~~~~~~~~-----~------~~~~~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~~~~~~~~ 243 (301)
T d1l0qa2 175 ANFDSMSISVIDTVTNSV-----I------DTVKVEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKITARIPVG 243 (301)
T ss_dssp EETTTTEEEEEETTTTEE-----E------EEEECSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEEEEEEECC
T ss_pred ECCCCCCCCCCCCCCEEE-----E------ECCCCCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEEEEEECCC
T ss_conf 012111111111110001-----1------10133577503110111101111002100002323656998199998489
Q ss_pred CCCCEEEEEECCCCCEE-EEEECCCCEEEEECCC
Q ss_conf 48657999994899999-9998289399999598
Q 000602 347 IGRGIWRCLYDSLSSLL-VTAGFDSAIKVHQFQA 379 (1398)
Q Consensus 347 ~~~~V~si~~spdg~~l-vtgg~Dg~I~iwdl~~ 379 (1398)
. .++.++|+|+|++| ++++.|+.|++||+..
T Consensus 244 ~--~~~~va~spdg~~l~va~~~~~~i~v~D~~t 275 (301)
T d1l0qa2 244 P--DPAGIAVTPDGKKVYVALSFCNTVSVIDTAT 275 (301)
T ss_dssp S--SEEEEEECTTSSEEEEEETTTTEEEEEETTT
T ss_pred C--CEEEEEEECCCCEEEEEECCCCEEEEEECCC
T ss_conf 9--8779999189899999989999699999999
|
| >d1l0qa2 b.69.2.3 (A:1-301) Surface layer protein {Archaeon Methanosarcina mazei [TaxId: 2209]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: YVTN repeat domain: Surface layer protein species: Archaeon Methanosarcina mazei [TaxId: 2209]
Probab=99.93 E-value=2e-20 Score=138.25 Aligned_cols=256 Identities=9% Similarity=0.033 Sum_probs=112.2
Q ss_pred CCCCEEEEECCCCE------ECCCEEEEEEEECCCCCCCCCEEE-EEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEE
Q ss_conf 99749999578670------036349999972189889988999-980-8919999889993887998660834899997
Q 000602 2 GKKDLSEWRLDVGQ------YLGEISALCFVHLPSHLSSLPFLL-AGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISC 73 (1398)
Q Consensus 2 ~D~tv~iWdl~~~~------h~~~Vtaiafs~~pd~~~~g~lLa-aG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~f 73 (1398)
+|++|.+||+.+++ .......++|+ || |++|+ ++. ++.|++||+.+++.+..+..+. .++++.|
T Consensus 10 ~~~~v~v~D~~t~~~~~~i~~g~~p~~va~s--pd----G~~l~v~~~~~~~i~v~d~~t~~~~~~~~~~~--~~~~~~~ 81 (301)
T d1l0qa2 10 ESDNISVIDVTSNKVTATIPVGSNPMGAVIS--PD----GTKVYVANAHSNDVSIIDTATNNVIATVPAGS--SPQGVAV 81 (301)
T ss_dssp TTTEEEEEETTTTEEEEEEECSSSEEEEEEC--TT----SSEEEEEEGGGTEEEEEETTTTEEEEEEECSS--SEEEEEE
T ss_pred CCCEEEEEECCCCEEEEEEECCCCCEEEEEE--CC----CCEEEEEECCCCEEEEEECCCCCEEEEEECCC--CCCCCCC
T ss_conf 9998999999999599999889983699992--89----89999997899989999999894103200024--6431100
Q ss_pred ECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEE-
Q ss_conf 1034645898752100999994-99699999147889999888863211115553146887689999984138994999-
Q 000602 74 NFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLA- 151 (1398)
Q Consensus 74 s~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~La- 151 (1398)
+ ++++ ..++... ++.+.+|+... .+....+.. .....++.|+| ++..++
T Consensus 82 ~-------~~~~---~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~---dg~~~~~ 132 (301)
T d1l0qa2 82 S-------PDGK---QVYVTNMASSTLSVIDTTS---------------NTVAGTVKT-GKSPLGLALSP---DGKKLYV 132 (301)
T ss_dssp C-------TTSS---EEEEEETTTTEEEEEETTT---------------TEEEEEEEC-SSSEEEEEECT---TSSEEEE
T ss_pred C-------CCCC---CCCCCCCCCCEEEECCCCC---------------CEEEEECCC-CCCCEEEEEEC---CCCEEEE
T ss_conf 0-------1111---1111111110011001243---------------024320244-44423787605---8971554
Q ss_pred EEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998899099999579919999834886318999862379888599999799-9099999246876666899998777898
Q 000602 152 IGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1398)
Q Consensus 152 tgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~d-g~I~iWd~~~~~~~~~~~~~~~~s~~~~ 230 (1398)
++..++.+.+|+..+......+..... ...+.+ ++++..++++..+ +.+.+|+..
T Consensus 133 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~------------------- 188 (301)
T d1l0qa2 133 TNNGDKTVSVINTVTKAVINTVSVGRS--PKGIAV---TPDGTKVYVANFDSMSISVIDTV------------------- 188 (301)
T ss_dssp EETTTTEEEEEETTTTEEEEEEECCSS--EEEEEE---CTTSSEEEEEETTTTEEEEEETT-------------------
T ss_pred EECCCCCEEEEECCCCCEEEECCCCCC--CEEEEE---ECCCCCEEEECCCCCCCCCCCCC-------------------
T ss_conf 201111001100014630353156788--428886---04654013101211111111111-------------------
Q ss_pred CCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEE---CCCEEEEEECCCCCCCCCCCCEEEEEEEEECC
Q ss_conf 887620253135664057999927668889999948999999997---89909999957894138887037630487408
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVS---DDRSARIWEVRAEYWKDSDSIEEVGSSVLYGH 307 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s---~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh 307 (1398)
.......+. ....+..+++++++..++.+. .++.|++||..+++. . ....+
T Consensus 189 --------------~~~~~~~~~-~~~~~~~~~~~~~g~~~~v~~~~~~~~~v~v~D~~t~~~-----~------~~~~~ 242 (301)
T d1l0qa2 189 --------------TNSVIDTVK-VEAAPSGIAVNPEGTKAYVTNVDKYFNTVSMIDTGTNKI-----T------ARIPV 242 (301)
T ss_dssp --------------TTEEEEEEE-CSSEEEEEEECTTSSEEEEEEECSSCCEEEEEETTTTEE-----E------EEEEC
T ss_pred --------------CEEEEECCC-CCCCCCEEECCCCCCCCCCCCCCCEEEEEEEEECCCCEE-----E------EEECC
T ss_conf --------------000111013-357750311011110111100210000232365699819-----9------99848
Q ss_pred CCCEEEEEEC--CCEE-EEEECCCCEEEECC-CCCEEEEEE
Q ss_conf 8447999991--9989-99958992999938-994689992
Q 000602 308 NARVWDCCLT--DSFI-ITAGEDCTCRVWGS-DGKQLKMIK 344 (1398)
Q Consensus 308 ~~~V~~i~~s--~~~l-vsgs~Dg~i~iWd~-~g~~l~~l~ 344 (1398)
...+++++|+ ++++ ++++.+++|++||+ +++.+.++.
T Consensus 243 ~~~~~~va~spdg~~l~va~~~~~~i~v~D~~t~~~~~~~~ 283 (301)
T d1l0qa2 243 GPDPAGIAVTPDGKKVYVALSFCNTVSVIDTATNTITATMA 283 (301)
T ss_dssp CSSEEEEEECTTSSEEEEEETTTTEEEEEETTTTEEEEEEE
T ss_pred CCCEEEEEEECCCCEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 99877999918989999998999969999999995999996
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.91 E-value=9.4e-21 Score=140.26 Aligned_cols=66 Identities=12% Similarity=0.104 Sum_probs=43.1
Q ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 97519992999981899399995689998643236764202111111134698189999532998899961788199998
Q 000602 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (1398)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd 608 (1398)
+.+++++.+++.. ++.+++||+.... +.... .+...+.+++|+|||++|++|+.+++|.+||
T Consensus 246 ~~~~~~~~~~~~~--~~~i~v~d~~~~~--------------~~~~~--~~~~~~~~~~~s~dG~~l~v~~~~~~i~v~D 307 (337)
T d1pbyb_ 246 TAVNPAKTRAFGA--YNVLESFDLEKNA--------------SIKRV--PLPHSYYSVNVSTDGSTVWLGGALGDLAAYD 307 (337)
T ss_dssp EEECTTSSEEEEE--ESEEEEEETTTTE--------------EEEEE--ECSSCCCEEEECTTSCEEEEESBSSEEEEEE
T ss_pred EEECCCCEEEEEC--CCCEEEEECCCCC--------------EEEEE--CCCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 8742661399973--5528999898896--------------99997--4899889999978999999994999299999
Q ss_pred CCCC
Q ss_conf 7974
Q 000602 609 LLRD 612 (1398)
Q Consensus 609 ~~~~ 612 (1398)
..+.
T Consensus 308 ~~t~ 311 (337)
T d1pbyb_ 308 AETL 311 (337)
T ss_dssp TTTC
T ss_pred CCCC
T ss_conf 9987
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.90 E-value=1.9e-21 Score=144.52 Aligned_cols=95 Identities=8% Similarity=-0.071 Sum_probs=40.8
Q ss_pred EEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECCC
Q ss_conf 99997899099999578941388870376304874088447999991--998999958992999938-994689992024
Q 000602 271 LVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI 347 (1398)
Q Consensus 271 LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~ 347 (1398)
+++...+..+.+|+...+.. .. ....++...+..+.++ +..++... ++.+.+||. +++.+..+...
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~v~d~~~~~~~~~~~~~- 291 (346)
T d1jmxb_ 223 PATADLLYGYLSVDLKTGKT-----HT----QEFADLTELYFTGLRSPKDPNQIYGV-LNRLAKYDLKQRKLIKAANLD- 291 (346)
T ss_dssp -CCCEEEEEEEEEETTTCCE-----EE----EEEEECSSCEEEEEECSSCTTEEEEE-ESEEEEEETTTTEEEEEEECS-
T ss_pred EEECCCCCEEEEEECCCCCE-----EE----EEEECCCCEEEEEEEECCCCEEEEEC-CCEEEEEECCCCCEEEEECCC-
T ss_conf 75404783499997778836-----87----87631566068889717997899942-983899989999399997499-
Q ss_pred CCCEEEEEECCCCCEEEEEECCCCEEEEEC
Q ss_conf 865799999489999999982893999995
Q 000602 348 GRGIWRCLYDSLSSLLVTAGFDSAIKVHQF 377 (1398)
Q Consensus 348 ~~~V~si~~spdg~~lvtgg~Dg~I~iwdl 377 (1398)
. .+++++|+|||++|++++.|+.|++||.
T Consensus 292 ~-~~~~va~s~DG~~l~v~~~d~~v~v~D~ 320 (346)
T d1jmxb_ 292 H-TYYCVAFDKKGDKLYLGGTFNDLAVFNP 320 (346)
T ss_dssp S-CCCEEEECSSSSCEEEESBSSEEEEEET
T ss_pred C-CEEEEEECCCCCEEEEEECCCCEEEEEC
T ss_conf 9-7789999689999999948992999999
|
| >d1pbyb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.89 E-value=7.1e-20 Score=134.83 Aligned_cols=280 Identities=7% Similarity=-0.009 Sum_probs=158.1
Q ss_pred CEEEEEE-CCCEEEEECCCCEEEEEEEEEE-CCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCC
Q ss_conf 8999980-8919999889993887998660-8348999971034645898752100999994-99699999147889999
Q 000602 36 PFLLAGS-GSQVLLYDLEAGTLIRPFQVFH-GIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNS 112 (1398)
Q Consensus 36 ~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~-~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~ 112 (1398)
.|+++++ ++.|+|||+++++++.++..+. +..+.+++|+ |||+ .++++.. ++.|.+||+.+
T Consensus 2 ~~~vt~~~d~~v~v~D~~s~~~~~~i~~~~~~~~~~~i~~s-------pDg~---~l~v~~~~~~~v~v~D~~t------ 65 (337)
T d1pbyb_ 2 DYILAPARPDKLVVIDTEKMAVDKVITIADAGPTPMVPMVA-------PGGR---IAYATVNKSESLVKIDLVT------ 65 (337)
T ss_dssp EEEEEEETTTEEEEEETTTTEEEEEEECTTCTTCCCCEEEC-------TTSS---EEEEEETTTTEEEEEETTT------
T ss_pred EEEEEECCCCEEEEEECCCCEEEEEEECCCCCCCCCEEEEC-------CCCC---EEEEEECCCCEEEEEECCC------
T ss_conf 69999767998999999999499999877889982379999-------9989---9999978999499999999------
Q ss_pred CCCCCCCCCCEEEEECCCCC-----CCEEEEEEEEECCCCCEEEEEE------------CCCEEEEEECCCCEEEEEECC
Q ss_conf 88886321111555314688-----7689999984138994999998------------899099999579919999834
Q 000602 113 QYQPETCVNLSLVQSLPRLS-----HWVFDVCFLKVCNGNRSLAIGC------------SDNSIRVWDISNSSIILEVHS 175 (1398)
Q Consensus 113 ~~~~~~~~~~~~~~~l~gh~-----~~V~~v~fsp~~~dg~~Latgs------------~Dg~I~iWdl~~~~~~~~l~~ 175 (1398)
++.+..+..+. ..+..++|+| ++++++++. .+..+.+||..++.....+..
T Consensus 66 ---------~~~~~~~~~~~~~~~~~~~~~v~~s~---dg~~l~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~ 133 (337)
T d1pbyb_ 66 ---------GETLGRIDLSTPEERVKSLFGAALSP---DGKTLAIYESPVRLELTHFEVQPTRVALYDAETLSRRKAFEA 133 (337)
T ss_dssp ---------CCEEEEEECCBTTEEEECTTCEEECT---TSSEEEEEEEEEEECSSCEEECCCEEEEEETTTTEEEEEEEC
T ss_pred ---------CCEEEEEECCCCCCCCCCEEEEEECC---CCCEEEEEECCCCCEEEECCCCCCCEEECCCCCCEEEEECCC
T ss_conf ---------92988872477731254025489868---775799950477620342034555212035667759884145
Q ss_pred CCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCC-----CCCCCCCCCCCCCCCEEEECCCCCCEEEEE
Q ss_conf 886318999862379888599999799909999924687666689-----999877789888762025313566405799
Q 000602 176 PERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLN-----SPEGNHAHGSSSDFKCFKLQDQQHTAVNLF 250 (1398)
Q Consensus 176 ~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~-----~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~ 250 (1398)
+.. ...+.+ ++++.++++++ +.+.+|+....+...... ......+++ ..++.....
T Consensus 134 ~~~--~~~~~~---s~dg~~l~~~~--~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~----- 194 (337)
T d1pbyb_ 134 PRQ--ITMLAW---ARDGSKLYGLG--RDLHVMDPEAGTLVEDKPIQSWEAETYAQPDV-------LAVWNQHES----- 194 (337)
T ss_dssp CSS--CCCEEE---CTTSSCEEEES--SSEEEEETTTTEEEEEECSTTTTTTTBCCCBC-------CCCCCCCTT-----
T ss_pred CCC--CEEEEE---CCCCCEEEEEC--CCCCEEEEECCCEEEEEECCCCCCCCEECCCC-------CEEECCCCC-----
T ss_conf 687--218998---68888899971--77505663037278886147754331135776-------314014665-----
Q ss_pred EEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEECC--CEEEEEECCC
Q ss_conf 99276688899999489999999978990999995789413888703763048740884479999919--9899995899
Q 000602 251 RLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLTD--SFIITAGEDC 328 (1398)
Q Consensus 251 ~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s~--~~lvsgs~Dg 328 (1398)
.+...+.......+.......+.++.+.+|+...+.. .. ....++...+..+.+.+ .+++. .++
T Consensus 195 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~~~~~~~~--~~~ 260 (337)
T d1pbyb_ 195 ---SGVMATPFYTARKDIDPADPTAYRTGLLTMDLETGEM-----AM----REVRIMDVFYFSTAVNPAKTRAFG--AYN 260 (337)
T ss_dssp ---TTEEEEEEEEEBTTSCTTSGGGEEEEEEEEETTTCCE-----EE----EEEEECSSCEEEEEECTTSSEEEE--EES
T ss_pred ---CCEEEEEEEEEEECCCEEEECCCCCCEEEEECCCCCE-----EE----EEECCCCCCEEEEEECCCCEEEEE--CCC
T ss_conf ---3124663244410366045403676179998688858-----88----983288750588874266139997--355
Q ss_pred CEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 2999938-9946899920248657999994899999999828939999959
Q 000602 329 TCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 329 ~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
.+++||+ +++.+..+.. .. .+.+++|+|+|++|++++.|+.|++||..
T Consensus 261 ~i~v~d~~~~~~~~~~~~-~~-~~~~~~~s~dG~~l~v~~~~~~i~v~D~~ 309 (337)
T d1pbyb_ 261 VLESFDLEKNASIKRVPL-PH-SYYSVNVSTDGSTVWLGGALGDLAAYDAE 309 (337)
T ss_dssp EEEEEETTTTEEEEEEEC-SS-CCCEEEECTTSCEEEEESBSSEEEEEETT
T ss_pred CEEEEECCCCCEEEEECC-CC-CEEEEEECCCCCEEEEEECCCCEEEEECC
T ss_conf 289998988969999748-99-88999997899999999499929999999
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.87 E-value=2.8e-17 Score=118.73 Aligned_cols=50 Identities=10% Similarity=-0.119 Sum_probs=21.2
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE------CCCEEEEECCCCEEEEEEEEEECCCEEEEEEE
Q ss_conf 036349999972189889988999980------89199998899938879986608348999971
Q 000602 16 YLGEISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCN 74 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~------dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs 74 (1398)
+.+++..++++ || ++.+++.. .+.|.+||.++++.+.++..+. ..++.|+
T Consensus 19 ~~~p~~~~a~s--pd----g~~~~~~~~~~~~~~~~v~v~D~~tg~~~~~~~~~~---~~~~a~S 74 (373)
T d2madh_ 19 ADGPTNDEAPG--AD----GRRSYINLPAHHSAIIQQWVLDAGSGSILGHVNGGF---LPNPVAA 74 (373)
T ss_pred CCCCCCCCCCC--CC----CCEEEEECCCCCCCCCEEEEEECCCCCEEEEEECCC---CCCEEEC
T ss_conf 78986563018--99----978999734225787659999899997999995798---8607986
|
| >d1jmxb_ b.69.2.2 (B:) Quinohemoprotein amine dehydrogenase B chain {Pseudomonas putida [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Quinohemoprotein amine dehydrogenase B chain domain: Quinohemoprotein amine dehydrogenase B chain species: Pseudomonas putida [TaxId: 303]
Probab=99.85 E-value=9.1e-19 Score=127.95 Aligned_cols=67 Identities=15% Similarity=0.122 Sum_probs=43.5
Q ss_pred EEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 97519992999981899399995689998643236764202111111134698189999532998899961788199998
Q 000602 529 WCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFP 608 (1398)
Q Consensus 529 ~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd 608 (1398)
..+++++.+++... ++.+.+|+..... +...+. +...+.+++|+|||++|++|+.||.|.+||
T Consensus 257 ~~~~~~~~~~~~~~-~~~v~v~d~~~~~--------------~~~~~~--~~~~~~~va~s~DG~~l~v~~~d~~v~v~D 319 (346)
T d1jmxb_ 257 GLRSPKDPNQIYGV-LNRLAKYDLKQRK--------------LIKAAN--LDHTYYCVAFDKKGDKLYLGGTFNDLAVFN 319 (346)
T ss_dssp EEECSSCTTEEEEE-ESEEEEEETTTTE--------------EEEEEE--CSSCCCEEEECSSSSCEEEESBSSEEEEEE
T ss_pred EEEECCCCEEEEEC-CCEEEEEECCCCC--------------EEEEEC--CCCCEEEEEECCCCCEEEEEECCCCEEEEE
T ss_conf 89717997899942-9838999899993--------------999974--999778999968999999994899299999
Q ss_pred CCCC
Q ss_conf 7974
Q 000602 609 LLRD 612 (1398)
Q Consensus 609 ~~~~ 612 (1398)
..+.
T Consensus 320 ~~t~ 323 (346)
T d1jmxb_ 320 PDTL 323 (346)
T ss_dssp TTTT
T ss_pred CCCC
T ss_conf 9658
|
| >d2madh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Gram negative methylotrophic bacteria (Thiobacillus versutus) [TaxId: 34007]
Probab=99.83 E-value=1.6e-15 Score=107.93 Aligned_cols=64 Identities=3% Similarity=-0.092 Sum_probs=40.3
Q ss_pred CCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCC--EEEEECCCCEEEEEECC
Q ss_conf 9992999981899399995689998643236764202111111134698189999532998--89996178819999879
Q 000602 533 LGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDE--VLFCGDLRGNLVLFPLL 610 (1398)
Q Consensus 533 ~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~--lLatGs~dGtI~iwd~~ 610 (1398)
.++..++....++.+.+|+...... ...+ .+...+.+++|+|||+ ++++++.|++|++||+.
T Consensus 286 ~~~~~~~~~~~~~~v~~~d~~t~~~--------------~~~~--~~~~~~~~~a~spDG~~~l~vt~~~d~~v~v~D~~ 349 (373)
T d2madh_ 286 SEQSAWKLHAAAKEVTSVTGLVGQT--------------SSQI--SLGHDVDAISVAQDGGPDLYALSAGTEVLHIYDAG 349 (373)
T ss_pred CCCCEEEEECCCCEEEEEECCCCCE--------------EEEE--CCCCCEEEEEECCCCCEEEEEEECCCCEEEEEECC
T ss_conf 8882478625898699998999969--------------8986--68998258999989998999996799929999999
Q ss_pred CC
Q ss_conf 74
Q 000602 611 RD 612 (1398)
Q Consensus 611 ~~ 612 (1398)
++
T Consensus 350 tg 351 (373)
T d2madh_ 350 AG 351 (373)
T ss_pred CC
T ss_conf 99
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.82 E-value=7.2e-16 Score=110.02 Aligned_cols=146 Identities=12% Similarity=0.066 Sum_probs=84.2
Q ss_pred CEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEE
Q ss_conf 59999979990999992468766668999987778988876202531356640579999276688899999489999999
Q 000602 194 LRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVS 273 (1398)
Q Consensus 194 ~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS 273 (1398)
..++++..+++|++|++... .....+.. ..|.+.+..|+|+|||++|++
T Consensus 5 ~v~v~~~~~~~I~v~~~~~~------------------------------~~l~~~~~-~~~~~~v~~la~spDG~~L~v 53 (333)
T d1ri6a_ 5 TVYIASPESQQIHVWNLNHE------------------------------GALTLTQV-VDVPGQVQPMVVSPDKRYLYV 53 (333)
T ss_dssp EEEEEEGGGTEEEEEEECTT------------------------------SCEEEEEE-EECSSCCCCEEECTTSSEEEE
T ss_pred EEEEECCCCCCEEEEEECCC------------------------------CCEEEEEE-ECCCCCEEEEEEECCCCEEEE
T ss_conf 99998789993899998399------------------------------97699999-757998868999589799999
Q ss_pred -EECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEEC-CCCEEEECC-CCCEEE--EEECC
Q ss_conf -97899099999578941388870376304874088447999991--998999958-992999938-994689--99202
Q 000602 274 -VSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGE-DCTCRVWGS-DGKQLK--MIKEH 346 (1398)
Q Consensus 274 -~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~-Dg~i~iWd~-~g~~l~--~l~~h 346 (1398)
+..|+.|++|++...... .... ....+...+..++++ ++++++++. ++.+.+|+. ...... ....+
T Consensus 54 ~~~~d~~i~~~~i~~~~~~----~~~~---~~~~~~~~p~~l~~spDg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~ 126 (333)
T d1ri6a_ 54 GVRPEFRVLAYRIAPDDGA----LTFA---AESALPGSLTHISTDHQGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEG 126 (333)
T ss_dssp EETTTTEEEEEEECTTTCC----EEEE---EEEECSSCCSEEEECTTSSEEEEEETTTTEEEEEEEETTEEEEEEEEECC
T ss_pred EECCCCEEEEEEEECCCCC----EEEE---EECCCCCCCEEEEECCCCCEEEECCCCCCCEEEECCCCCCCEECCCCCCC
T ss_conf 9778996999999689870----7985---30136998549999599988742056888302200111000000100377
Q ss_pred CCCCEEEEEECCCCCEEEEEEC-CCCEEEEECC
Q ss_conf 4865799999489999999982-8939999959
Q 000602 347 IGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQFQ 378 (1398)
Q Consensus 347 ~~~~V~si~~spdg~~lvtgg~-Dg~I~iwdl~ 378 (1398)
.. .+.++.++|++++++.++. +..+.+|+..
T Consensus 127 ~~-~~~~v~~s~d~~~~~~~~~~~~~i~~~~~~ 158 (333)
T d1ri6a_ 127 LD-GCHSANISPDNRTLWVPALKQDRICLFTVS 158 (333)
T ss_dssp CT-TBCCCEECTTSSEEEEEEGGGTEEEEEEEC
T ss_pred CC-CCEEEEEEECCEEEECCCCCCCEEEEEEEC
T ss_conf 85-314988630101310256554205689732
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.81 E-value=1.3e-17 Score=120.83 Aligned_cols=287 Identities=11% Similarity=-0.010 Sum_probs=172.0
Q ss_pred CCEEEEEEEECCCCCCCCCEEEEEE------CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 6349999972189889988999980------8919999889993887998660834899997103464589875210099
Q 000602 18 GEISALCFVHLPSHLSSLPFLLAGS------GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEV 91 (1398)
Q Consensus 18 ~~Vtaiafs~~pd~~~~g~lLaaG~------dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~l 91 (1398)
.|++..+.+ || ++.+++.. ...|.+||..+++++.++.... ..+++|+ |||+ .+
T Consensus 2 ~p~~~~a~s--pd----g~~~~v~~~~~~~~~~~v~v~D~~tg~~~~~~~~g~---~~~~a~S-------pDg~----~l 61 (355)
T d2bbkh_ 2 EPRILEAPA--PD----ARRVYVNDPAHFAAVTQQFVIDGEAGRVIGMIDGGF---LPNPVVA-------DDGS----FI 61 (355)
T ss_dssp CCCBCCCCC--CC----TTEEEEEECGGGCSSEEEEEEETTTTEEEEEEEECS---SCEEEEC-------TTSS----CE
T ss_pred CCCEEEEEC--CC----CCEEEEEECCCCCCCCEEEEEECCCCCEEEEEECCC---CCCEEEC-------CCCC----EE
T ss_conf 971747658--99----999999826647776719999999994999998999---9856994-------8999----99
Q ss_pred EEE-----------CCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCC-------CCCEEEEEEEEECCCCCEEEEE
Q ss_conf 999-----------4996999991478899998888632111155531468-------8768999998413899499999
Q 000602 92 ALF-----------GEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRL-------SHWVFDVCFLKVCNGNRSLAIG 153 (1398)
Q Consensus 92 a~~-----------gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh-------~~~V~~v~fsp~~~dg~~Latg 153 (1398)
++. .++.|++||..+. +....+..+ ......+.|+| ++.+++++
T Consensus 62 ~v~~~~~~~~~~g~~d~~v~v~D~~t~---------------~~~~~~~~~~~~~~~~~~~~~~~~~s~---dg~~~~v~ 123 (355)
T d2bbkh_ 62 AHASTVFSRIARGERTDYVEVFDPVTL---------------LPTADIELPDAPRFLVGTYPWMTSLTP---DGKTLLFY 123 (355)
T ss_dssp EEEEEEEEETTEEEEEEEEEEECTTTC---------------CEEEEEEETTCCCCCBSCCGGGEEECT---TSSEEEEE
T ss_pred EEEECCCCCCCCCCCCCEEEEEECCCC---------------CEEEEEECCCCCEEECCCCCCEEEEEC---CCCEEEEE
T ss_conf 999677764201589998999999999---------------798898058864031179873499933---88715773
Q ss_pred E--CCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 8--89909999957991999983488631899986237988859999979990999992468766668999987778988
Q 000602 154 C--SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 154 s--~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
. .+..+.+|+..+++.+..+..+.....+. ......++.+.|+....+......
T Consensus 124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~dg~~~~v~~~~~~----------------- 179 (355)
T d2bbkh_ 124 QFSPAPAVGVVDLEGKAFKRMLDVPDCYHIFP-------TAPDTFFMHCRDGSLAKVAFGTEG----------------- 179 (355)
T ss_dssp ECSSSCEEEEEETTTTEEEEEEECCSEEEEEE-------EETTEEEEEETTSCEEEEECCSSS-----------------
T ss_pred CCCCCCEEEEEECCCCCEEEEEECCCCCEEEE-------CCCCCEEEECCCCCEEEEEECCCC-----------------
T ss_conf 27988204543057883766770587404730-------699636999389998999834787-----------------
Q ss_pred CCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCC---
Q ss_conf 87620253135664057999927668889999948999999997899099999578941388870376304874088---
Q 000602 232 SDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHN--- 308 (1398)
Q Consensus 232 ~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~--- 308 (1398)
.+...+.. .. ...+...+....+.+++..++.++.++.+.+|++..+... .+. ....+.
T Consensus 180 ----~~~~~~~~-~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~~--~~~~~~~~~ 241 (355)
T d2bbkh_ 180 ----TPEITHTE-VF-----HPEDEFLINHPAYSQKAGRLVWPTYTGKIHQIDLSSGDAK------FLP--AVEALTEAE 241 (355)
T ss_dssp ----CCEEEECC-CC-----SCTTSCBCSCCEEETTTTEEEEEBTTSEEEEEECTTSSCE------ECC--CEESSCHHH
T ss_pred ----EEEEEECC-CC-----CCEECCEEEECCCCCCCCEEEEECCCCEEEEEECCCCCEE------EEE--CCCCCCCCE
T ss_conf ----37999624-33-----3000110610215389973887469982999965899079------984--457844126
Q ss_pred -------CCEEEEEEC--CCEEEEEECC----------CCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCC--EEEEE
Q ss_conf -------447999991--9989999589----------92999938-99468999202486579999948999--99999
Q 000602 309 -------ARVWDCCLT--DSFIITAGED----------CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS--LLVTA 366 (1398)
Q Consensus 309 -------~~V~~i~~s--~~~lvsgs~D----------g~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~--~lvtg 366 (1398)
.....++++ +..++....+ ..+.+||. +++.+..+.... .+.+++|+|+|+ +++++
T Consensus 242 ~~~~~~p~~~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~v~v~d~~t~~~~~~~~~~~--~~~~~a~spDG~~~l~v~~ 319 (355)
T d2bbkh_ 242 RADGWRPGGWQQVAYHRALDRIYLLVDQRDEWRHKTASRFVVVLDAKTGERLAKFEMGH--EIDSINVSQDEKPLLYALS 319 (355)
T ss_dssp HHTTEEECSSSCEEEETTTTEEEEEEEECCTTCTTSCEEEEEEEETTTCCEEEEEEEEE--EECEEEECCSSSCEEEEEE
T ss_pred EEEEEECCCEEEEEEECCCCEEEEEECCCCCEEECCCCCEEEEEECCCCCEEEEECCCC--CEEEEEECCCCCEEEEEEE
T ss_conf 85433035108999807997678874068712651799759998678884989966899--8779999289996999997
Q ss_pred ECCCCEEEEEC-CCCCCCCCC
Q ss_conf 82893999995-988755324
Q 000602 367 GFDSAIKVHQF-QAFLPGSLE 386 (1398)
Q Consensus 367 g~Dg~I~iwdl-~~~~l~~l~ 386 (1398)
+.|+.|++||+ +++.++++.
T Consensus 320 ~~d~~i~v~D~~tg~~~~~i~ 340 (355)
T d2bbkh_ 320 TGDKTLYIHDAESGEELRSVN 340 (355)
T ss_dssp TTTTEEEEEETTTCCEEEEEC
T ss_pred CCCCEEEEEECCCCCEEEEEE
T ss_conf 899989999999998999992
|
| >d1ri6a_ b.69.11.1 (A:) Putative isomerase YbhE {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Putative isomerase YbhE family: Putative isomerase YbhE domain: Putative isomerase YbhE species: Escherichia coli [TaxId: 562]
Probab=99.81 E-value=1.1e-15 Score=108.97 Aligned_cols=278 Identities=12% Similarity=0.092 Sum_probs=134.7
Q ss_pred EEEE-CCCEEEEECCCCEEEEEEE--EEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCC
Q ss_conf 9980-8919999889993887998--6608348999971034645898752100999994-9969999914788999988
Q 000602 39 LAGS-GSQVLLYDLEAGTLIRPFQ--VFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQY 114 (1398)
Q Consensus 39 aaG~-dg~I~Iwd~~tg~~i~~~~--~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~ 114 (1398)
+++. ++.|+||++.+...+..++ .+.+ .+.+++|+ |||+ .++++.. ++.|++|++.....
T Consensus 8 v~~~~~~~I~v~~~~~~~~l~~~~~~~~~~-~v~~la~s-------pDG~---~L~v~~~~d~~i~~~~i~~~~~----- 71 (333)
T d1ri6a_ 8 IASPESQQIHVWNLNHEGALTLTQVVDVPG-QVQPMVVS-------PDKR---YLYVGVRPEFRVLAYRIAPDDG----- 71 (333)
T ss_dssp EEEGGGTEEEEEEECTTSCEEEEEEEECSS-CCCCEEEC-------TTSS---EEEEEETTTTEEEEEEECTTTC-----
T ss_pred EECCCCCCEEEEEECCCCCEEEEEEECCCC-CEEEEEEE-------CCCC---EEEEEECCCCEEEEEEEECCCC-----
T ss_conf 987899938999983999769999975799-88689995-------8979---9999977899699999968987-----
Q ss_pred CCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEEC-CCEEEEEECCCCEEEEEEC-CCCCCEEEEEEEECCCCC
Q ss_conf 88632111155531468876899999841389949999988-9909999957991999983-488631899986237988
Q 000602 115 QPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCS-DNSIRVWDISNSSIILEVH-SPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 115 ~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~-Dg~I~iWdl~~~~~~~~l~-~~~~~~~~sv~~~~~s~d 192 (1398)
..+..... .+...+..++|+| ||++|++++. ++.|.+|+........... ........++.+ +++
T Consensus 72 ------~~~~~~~~-~~~~~p~~l~~sp---Dg~~l~v~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~v~~---s~d 138 (333)
T d1ri6a_ 72 ------ALTFAAES-ALPGSLTHISTDH---QGQFVFVGSYNAGNVSVTRLEDGLPVGVVDVVEGLDGCHSANI---SPD 138 (333)
T ss_dssp ------CEEEEEEE-ECSSCCSEEEECT---TSSEEEEEETTTTEEEEEEEETTEEEEEEEEECCCTTBCCCEE---CTT
T ss_pred ------CEEEEEEC-CCCCCCEEEEECC---CCCEEEECCCCCCCEEEECCCCCCCEECCCCCCCCCCCEEEEE---EEC
T ss_conf ------07985301-3699854999959---9988742056888302200111000000100377853149886---301
Q ss_pred CCEEEEEEC-CCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEE
Q ss_conf 859999979-9909999924687666689999877789888762025313566405799992766888999994899999
Q 000602 193 ALRIASGTI-YNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKL 271 (1398)
Q Consensus 193 ~~~iasgs~-dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~L 271 (1398)
+..++.+.. +..|.+|+........ .................++|++++.++
T Consensus 139 ~~~~~~~~~~~~~i~~~~~~~~~~~~---------------------------~~~~~~~~~~~g~~p~~i~~~~~~~~~ 191 (333)
T d1ri6a_ 139 NRTLWVPALKQDRICLFTVSDDGHLV---------------------------AQDPAEVTTVEGAGPRHMVFHPNEQYA 191 (333)
T ss_dssp SSEEEEEEGGGTEEEEEEECTTSCEE---------------------------EEEEEEEECSTTCCEEEEEECTTSSEE
T ss_pred CEEEECCCCCCCEEEEEEECCCCCCE---------------------------EEECEEEEEECCCCCCEEEEECCCEEE
T ss_conf 01310256554205689732687410---------------------------010001334038875279996020147
Q ss_pred EEEE-CCCEEEEEECCCCCCCCCCCCEEEEEEEE----ECCCCCEEEEEEC--CC-EEEEEECCCCEEEECC-C-CCEEE
Q ss_conf 9997-89909999957894138887037630487----4088447999991--99-8999958992999938-9-94689
Q 000602 272 VSVS-DDRSARIWEVRAEYWKDSDSIEEVGSSVL----YGHNARVWDCCLT--DS-FIITAGEDCTCRVWGS-D-GKQLK 341 (1398)
Q Consensus 272 vS~s-~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~----~gh~~~V~~i~~s--~~-~lvsgs~Dg~i~iWd~-~-g~~l~ 341 (1398)
+... ..+...+|+....... ......... .........++++ ++ .++.+..++.+.+|++ . +....
T Consensus 192 ~~~~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~s~d~~~~~~~~~~~~~~~~~~~~~~~~~~~ 267 (333)
T d1ri6a_ 192 YCVNELNSSVDVWELKDPHGN----IECVQTLDMMPENFSDTRWAADIHITPDGRHLYACDRTASLITVFSVSEDGSVLS 267 (333)
T ss_dssp EEEETTTTEEEEEESSCTTSC----CEEEEEEECSCTTCCSCCCEEEEEECTTSSEEEEEETTTTEEEEEEECTTSCCEE
T ss_pred EEECCCCCCEEEEEECCCCCC----EEEEEEEEEEECCCCCCCCCEEEEEECCCCCEEEECCCCCEEEEEEECCCCCEEE
T ss_conf 862046672178851035552----0210022343068776553126899515672055045688278788739997899
Q ss_pred E--EECCCCCCEEEEEECCCCCEEEEEEC-CCCEEEEEC
Q ss_conf 9--92024865799999489999999982-893999995
Q 000602 342 M--IKEHIGRGIWRCLYDSLSSLLVTAGF-DSAIKVHQF 377 (1398)
Q Consensus 342 ~--l~~h~~~~V~si~~spdg~~lvtgg~-Dg~I~iwdl 377 (1398)
. ...... .++.++|+|+|++|++++. ++.|++|++
T Consensus 268 ~~~~~~~~~-~p~~~a~spDGk~l~va~~~~~~v~v~~i 305 (333)
T d1ri6a_ 268 KEGFQPTET-QPRGFNVDHSGKYLIAAGQKSHHISVYEI 305 (333)
T ss_dssp EEEEEECSS-SCCCEEECTTSSEEEEECTTTCEEEEEEE
T ss_pred EEEEECCCC-CEEEEEEECCCCEEEEEECCCCEEEEEEE
T ss_conf 999967899-76289990798999999889993999999
|
| >d2bbkh_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.73 E-value=1.5e-15 Score=108.11 Aligned_cols=32 Identities=9% Similarity=0.064 Sum_probs=22.8
Q ss_pred CCEEEEEEECCCC--EEEEECCCCEEEEEECCCC
Q ss_conf 8189999532998--8999617881999987974
Q 000602 581 ARIMCLDASFEDE--VLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 581 ~~Itsl~~Spdg~--lLatGs~dGtI~iwd~~~~ 612 (1398)
..+.+++|+|||+ +++++..+++|++||..++
T Consensus 300 ~~~~~~a~spDG~~~l~v~~~~d~~i~v~D~~tg 333 (355)
T d2bbkh_ 300 HEIDSINVSQDEKPLLYALSTGDKTLYIHDAESG 333 (355)
T ss_dssp EEECEEEECCSSSCEEEEEETTTTEEEEEETTTC
T ss_pred CCEEEEEECCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 9877999928999699999789998999999999
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.66 E-value=1.3e-11 Score=83.69 Aligned_cols=110 Identities=16% Similarity=0.126 Sum_probs=51.2
Q ss_pred EEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEE----CCCEEEEEEECCCCCCCCCCCCCEEEEEEEC--
Q ss_conf 9999721898899889999808919999889993887998660----8348999971034645898752100999994--
Q 000602 22 ALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFH----GIRLHGISCNFINCTEGSVSTRVTFEVALFG-- 95 (1398)
Q Consensus 22 aiafs~~pd~~~~g~lLaaG~dg~I~Iwd~~tg~~i~~~~~~~----~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-- 95 (1398)
.+.|. +| +.++.. .++.+.+||+.+++....+..+. ...|.++.|| ||+ ..|+...
T Consensus 21 ~~~W~--~d----~~~~~~-~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~i~~~~~S-------pDg----~~i~~~~~~ 82 (470)
T d2bgra1 21 SLRWI--SD----HEYLYK-QENNILVFNAEYGNSSVFLENSTFDEFGHSINDYSIS-------PDG----QFILLEYNY 82 (470)
T ss_dssp CCEEC--SS----SEEEEE-SSSCEEEEETTTCCEEEEECTTTTTTSSSCCCEEEEC-------TTS----SEEEEEEEE
T ss_pred CCEEC--CC----CEEEEE-CCCCEEEEECCCCCEEEEECHHHHHHCCCCCCEEEEC-------CCC----CEEEEEECC
T ss_conf 78968--99----979997-5994999988999789997015644316765405998-------988----979999777
Q ss_pred --------CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCC
Q ss_conf --------996999991478899998888632111155531468876899999841389949999988990999995799
Q 000602 96 --------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNS 167 (1398)
Q Consensus 96 --------d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~ 167 (1398)
++.+.+||+.+. ....+..+.+.+..+.|+| ||+.+|.. .++.+.+|+...+
T Consensus 83 ~~~~r~s~~~~~~l~d~~~~----------------~~~~l~~~~~~~~~~~~SP---DG~~ia~~-~~~~l~~~~~~~g 142 (470)
T d2bgra1 83 VKQWRHSYTASYDIYDLNKR----------------QLITEERIPNNTQWVTWSP---VGHKLAYV-WNNDIYVKIEPNL 142 (470)
T ss_dssp EECSSSCEEEEEEEEETTTT----------------EECCSSCCCTTEEEEEECS---STTCEEEE-ETTEEEEESSTTS
T ss_pred CCEEEECCCCEEEEEECCCC----------------CCCCCCCCCCCCCCCCCCC---CCCEEEEE-ECCCCEEEECCCC
T ss_conf 10001046734999989888----------------5131246874231010146---76413575-1464137988999
Q ss_pred EE
Q ss_conf 19
Q 000602 168 SI 169 (1398)
Q Consensus 168 ~~ 169 (1398)
..
T Consensus 143 ~~ 144 (470)
T d2bgra1 143 PS 144 (470)
T ss_dssp CC
T ss_pred CE
T ss_conf 46
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.63 E-value=2.7e-14 Score=100.29 Aligned_cols=293 Identities=8% Similarity=-0.126 Sum_probs=142.6
Q ss_pred ECCCEEEEEEEECCCCCCCCC--EEEEE-E-CC--CEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEE
Q ss_conf 036349999972189889988--99998-0-89--199998899938879986608348999971034645898752100
Q 000602 16 YLGEISALCFVHLPSHLSSLP--FLLAG-S-GS--QVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTF 89 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~--lLaaG-~-dg--~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~ 89 (1398)
..++...++.. ++ ++ +++.. . ++ .|.+||..+++.+..+..+.. ..++|+ ||| +
T Consensus 18 ~~g~~~~~a~~--~~----~~~~~v~~~~~~~g~~~~~~~d~~~~~~~~~~~~~~~---~~~a~s-------pDg----~ 77 (368)
T d1mdah_ 18 SDGSSCDHGPG--AI----SRRSHITLPAYFAGTTENWVSCAGCGVTLGHSLGAFL---SLAVAG-------HSG----S 77 (368)
T ss_dssp CCCCCBCCCCC--CC----TTEEEEEECTTTCSSEEEEEEETTTTEEEEEEEECTT---CEEEEC-------TTS----S
T ss_pred CCCCCCCCCCC--CC----CCCEEEEEECCCCCCCEEEEEECCCCCEEEEEECCCC---CCCEEC-------CCC----C
T ss_conf 67986664558--98----7612697204578862179970899837788857877---751398-------999----8
Q ss_pred EEEEEC-----------CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCC-------CCEEEEEEEEECCCCCEEE
Q ss_conf 999994-----------9969999914788999988886321111555314688-------7689999984138994999
Q 000602 90 EVALFG-----------EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLS-------HWVFDVCFLKVCNGNRSLA 151 (1398)
Q Consensus 90 ~la~~g-----------d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~-------~~V~~v~fsp~~~dg~~La 151 (1398)
.+++.. ++.|.+||..+ ++....+..+. .....++|+| ||++|+
T Consensus 78 ~i~~~~~~~~~~~~g~~d~~v~v~D~~t---------------~~~~~~i~~p~~~~~~~g~~p~~~a~Sp---DGk~l~ 139 (368)
T d1mdah_ 78 DFALASTSFARSAKGKRTDYVEVFDPVT---------------FLPIADIELPDAPRFSVGPRVHIIGNCA---SSACLL 139 (368)
T ss_dssp CEEEEEEEETTTTSSSEEEEEEEECTTT---------------CCEEEEEEETTSCSCCBSCCTTSEEECT---TSSCEE
T ss_pred EEEEECCCCCCCCCCCCCCEEEEEECCC---------------CCEEEEECCCCCCEECCCCCCCCEEECC---CCCEEE
T ss_conf 8999755676401035678699998999---------------9383064378542102468864058878---998999
Q ss_pred EEE-CCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCC
Q ss_conf 998-8990999995799199998348863189998623798885999997999099999246876666899998777898
Q 000602 152 IGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGS 230 (1398)
Q Consensus 152 tgs-~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~ 230 (1398)
++. .++.+.+||+.+++....+..+....++. .....+++.+.||.+.+++...........
T Consensus 140 va~~~~~~v~~~d~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~~~Dg~~~~~~~~~~~~~~~~~---------- 202 (368)
T d1mdah_ 140 FFLFGSSAAAGLSVPGASDDQLTKSASCFHIHP-------GAAATHYLGSCPASLAASDLAAAPAAAGIV---------- 202 (368)
T ss_dssp EEECSSSCEEEEEETTTEEEEEEECSSCCCCEE-------EETTEEECCCCTTSCEEEECCSSCCCCEEC----------
T ss_pred EEECCCCEEEEEECCCCCEEEEEECCCCCEECC-------CCCCEEEEECCCCCEEEEEECCCCEEEEEE----------
T ss_conf 996899859999899893867860467523746-------998239999489988999826896266653----------
Q ss_pred CCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCC-----CCEEEEEEEEE
Q ss_conf 8876202531356640579999276688899999489999999978990999995789413888-----70376304874
Q 000602 231 SSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSD-----SIEEVGSSVLY 305 (1398)
Q Consensus 231 ~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~-----~~~~i~~~~~~ 305 (1398)
....+..+...+..+.+.+++..+.+. .+.+.+++.......... ...... ....
T Consensus 203 -----------------~~~~~~~~~~~~~~~~~~~~g~~~~~~--~~~v~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 262 (368)
T d1mdah_ 203 -----------------GAQCTGAQNCSSQAAQANYPGMLVWAV--ASSILQGDIPAAGATMKAAIDGNESGRKA-DNFR 262 (368)
T ss_dssp -----------------CCCSCTTSCBCSCCEEETTTTEEEECB--SSCCEEEECCSSCCEEECCCCSSCTHHHH-TTEE
T ss_pred -----------------ECCCCCCCCCCEEECCCCCCCEEEEEC--CCCEEEEEECCCCEEEEEECCCCCCEEEE-EEEC
T ss_conf -----------------031113566646601015586899934--89779996069936997602465430455-4012
Q ss_pred CCCCCEEEEEECCCEEEEEECC---------CCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCC-E-EEEEECCCCEE
Q ss_conf 0884479999919989999589---------92999938-99468999202486579999948999-9-99998289399
Q 000602 306 GHNARVWDCCLTDSFIITAGED---------CTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSS-L-LVTAGFDSAIK 373 (1398)
Q Consensus 306 gh~~~V~~i~~s~~~lvsgs~D---------g~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~-~-lvtgg~Dg~I~ 373 (1398)
........+...+..++....+ ..+.+||. +++.+..+... . .+.+++|+||++ + ++++..|+.|+
T Consensus 263 ~~g~~~~a~~~~~~~~~v~~~~~~~~~~~~~~~v~v~D~~t~~~~~~~~~~-~-~~~~~a~spDG~~~ly~s~~~~~~v~ 340 (368)
T d1mdah_ 263 SAGFQMVAKLKNTDGIMILTVEHSRSCLAAAENTSSVTASVGQTSGPISNG-H-DSDAIIAAQDGASDNYANSAGTEVLD 340 (368)
T ss_dssp ECSSSCEEEETTTTEEEEEEEECSSCTTSCEEEEEEEESSSCCEEECCEEE-E-EECEEEECCSSSCEEEEEETTTTEEE
T ss_pred CCCCEEEEECCCCCEEEEEECCCCCEEECCCCEEEEEECCCCCEEEEECCC-C-CEEEEEECCCCCEEEEEEECCCCEEE
T ss_conf 788356887179987999835897334058864999989999486895589-9-65179999899989999948999699
Q ss_pred EEEC-CCCCCCCC
Q ss_conf 9995-98875532
Q 000602 374 VHQF-QAFLPGSL 385 (1398)
Q Consensus 374 iwdl-~~~~l~~l 385 (1398)
+||. .++.++++
T Consensus 341 v~D~~tgk~~~~i 353 (368)
T d1mdah_ 341 IYDAASDQDQSSV 353 (368)
T ss_dssp EEESSSCEEEEEC
T ss_pred EEECCCCCEEEEE
T ss_conf 9989999799998
|
| >d2bgra1 b.70.3.1 (A:39-508) Dipeptidyl peptidase IV/CD26, N-terminal domain {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl peptidase IV/CD26, N-terminal domain species: Pig (Sus scrofa) [TaxId: 9823]
Probab=99.58 E-value=7.8e-13 Score=91.26 Aligned_cols=14 Identities=14% Similarity=0.128 Sum_probs=9.2
Q ss_pred CCCCEEEEEEEECC
Q ss_conf 87530658786315
Q 000602 784 FHGREIHTLCFVSE 797 (1398)
Q Consensus 784 ~HgreI~sv~~~~~ 797 (1398)
.|...+++++|+|+
T Consensus 413 ~~~~~~~s~~fSpd 426 (470)
T d2bgra1 413 PERCQYYSVSFSKE 426 (470)
T ss_dssp TTTBCBEEEEECTT
T ss_pred CCCCCEEEEEECCC
T ss_conf 88898799999989
|
| >d1mdah_ b.69.2.1 (H:) Methylamine dehydrogenase, H-chain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: YVTN repeat-like/Quinoprotein amine dehydrogenase family: Methylamine dehydrogenase, H-chain domain: Methylamine dehydrogenase, H-chain species: Paracoccus denitrificans [TaxId: 266]
Probab=99.54 E-value=1.3e-12 Score=89.83 Aligned_cols=33 Identities=12% Similarity=0.008 Sum_probs=23.8
Q ss_pred CCCEEEEEEECCCC--EEEEECCCCEEEEEECCCC
Q ss_conf 98189999532998--8999617881999987974
Q 000602 580 GARIMCLDASFEDE--VLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 580 ~~~Itsl~~Spdg~--lLatGs~dGtI~iwd~~~~ 612 (1398)
...+.+++|+|||+ +++++..+++|++||..++
T Consensus 313 ~~~~~~~a~spDG~~~ly~s~~~~~~v~v~D~~tg 347 (368)
T d1mdah_ 313 GHDSDAIIAAQDGASDNYANSAGTEVLDIYDAASD 347 (368)
T ss_dssp EEEECEEEECCSSSCEEEEEETTTTEEEEEESSSC
T ss_pred CCCEEEEEECCCCCEEEEEEECCCCEEEEEECCCC
T ss_conf 99651799998999899999489996999989999
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.49 E-value=4.5e-15 Score=105.12 Aligned_cols=268 Identities=10% Similarity=-0.027 Sum_probs=141.6
Q ss_pred CEEEE-EE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCC
Q ss_conf 89999-80-89199998899938879986608348999971034645898752100999994996999991478899998
Q 000602 36 PFLLA-GS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFGEKRVKLFELNFELSPNSQ 113 (1398)
Q Consensus 36 ~lLaa-G~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~gd~~I~iwdl~~~~~~~~~ 113 (1398)
.|+++ |+ .|+|+||++.+++.+..+.+ |+ |++. ......+.+.+++...
T Consensus 11 ~y~f~Sgg~sG~V~V~dlpS~r~l~~IpV----------fs-------pd~~----~g~g~~~es~~vl~~~-------- 61 (441)
T d1qnia2 11 YYGFWSGGHQGEVRVLGVPSMRELMRIPV----------FN-------VDSA----TGWGITNESKEILGGD-------- 61 (441)
T ss_dssp EEEEEECBTTCCEEEEEETTTEEEEEECS----------SS-------BCTT----TCTTTSHHHHHHHCSS--------
T ss_pred EEEEEECCCCCCEEEEECCCCCEEEEEEE----------EC-------CCCC----EEEEECCCCCEEEECC--------
T ss_conf 79999688777489996789807999976----------75-------7898----7999888650478313--------
Q ss_pred CCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEE-ECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCC
Q ss_conf 8886321111555314688768999998413899499999-889909999957991999983488631899986237988
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIG-CSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLE 192 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latg-s~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d 192 (1398)
........|.-......+.| ||++|.+. ..+++|.++|+.+++....+..+.......+++ +++
T Consensus 62 ---------~~~~~gd~hhP~~s~t~gtp---DGr~lfV~d~~~~rVavIDl~t~k~~~ii~iP~g~gphgi~~---spd 126 (441)
T d1qnia2 62 ---------QQYLNGDCHHPHISMTDGRY---DGKYLFINDKANTRVARIRLDIMKTDKITHIPNVQAIHGLRL---QKV 126 (441)
T ss_dssp ---------SCCSCCCBCCCEEEEETTEE---EEEEEEEEETTTTEEEEEETTTTEEEEEEECTTCCCEEEEEE---CCS
T ss_pred ---------CCCCCCCCCCCCCCEECCCC---CCCEEEEECCCCCEEEEEECCCCCEEEEEECCCCCCCCCEEE---ECC
T ss_conf ---------32256755677722103268---888899973899979999887784755795678878643487---056
Q ss_pred CC--EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCE
Q ss_conf 85--9999979990999992468766668999987778988876202531356640579999276688899999489999
Q 000602 193 AL--RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSK 270 (1398)
Q Consensus 193 ~~--~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~ 270 (1398)
++ +++..+.+..-...+... . ........+..++.. +......+.. .+....+.++|++++
T Consensus 127 g~t~YV~~~~~~~v~~~~dg~~--------------~-~~~~~~~~~~~iD~~-t~~v~~qI~v-~~~p~~v~~spdGk~ 189 (441)
T d1qnia2 127 PKTNYVFCNAEFVIPQPNDGTD--------------F-SLDNSYTMFTAIDAE-TMDVAWQVIV-DGNLDNTDADYTGKY 189 (441)
T ss_dssp SBCCEEEEEECSCEESSCSSSC--------------C-CGGGEEEEEEEEETT-TCSEEEEEEE-SSCCCCEEECSSSSE
T ss_pred CCEEEEEECCCCCCCCCCCCCC--------------C-CCCCCCCEEEEECCC-CCEEEEEEEC-CCCCCCEEECCCCCE
T ss_conf 9989999566775443676630--------------0-145553238866375-5606478736-998654698799998
Q ss_pred EEEEECCC-EEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEECC
Q ss_conf 99997899-099999578941388870376304874088447999991--998999958992999938-99468999202
Q 000602 271 LVSVSDDR-SARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIKEH 346 (1398)
Q Consensus 271 LvS~s~Dg-~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h 346 (1398)
+++.+.+. .+..++..+... ...+. .... ...+.+. ++++ ..+.++.+.+++. ..+.+..+...
T Consensus 190 a~vt~~nse~~~~id~~t~~~-----~d~i~--v~n~----p~~~~~~~dGk~~-~v~~~~v~vvd~~~~~~v~~~IPvg 257 (441)
T d1qnia2 190 ATSTCYNSERAVDLAGTMRND-----RDWVV--VFNV----ERIAAAVKAGNFK-TIGDSKVPVVDGRGESEFTRYIPVP 257 (441)
T ss_dssp EEEEESCTTCCSSHHHHTCSS-----BCEEE--EEEH----HHHHHHHHTTCCB-CCTTCCCCEEECSSSCSSEEEECCB
T ss_pred EEEEECCCCCEEEEECCCCCE-----EEEEE--ECCC----CCEEEEECCCCEE-EECCCCCEEEECCCCCCEEEEEECC
T ss_conf 999851787318985157121-----78999--6885----1107996699999-9699982899803687068997179
Q ss_pred CCCCEEEEEECCCCCEEE-EEECCCCEEEEECC
Q ss_conf 486579999948999999-99828939999959
Q 000602 347 IGRGIWRCLYDSLSSLLV-TAGFDSAIKVHQFQ 378 (1398)
Q Consensus 347 ~~~~V~si~~spdg~~lv-tgg~Dg~I~iwdl~ 378 (1398)
.. ...+.++|||++++ ++..++++.+||+.
T Consensus 258 ks--PhGv~vSPDGkyl~~~~~~~~tvsv~d~~ 288 (441)
T d1qnia2 258 KN--PHGLNTSPDGKYFIANGKLSPTVSVIAID 288 (441)
T ss_dssp SS--CCCEEECTTSCEEEEECTTSSBEEEEEGG
T ss_pred CC--CCCCEECCCCCEEEEECCCCCCEEEEEEE
T ss_conf 88--66726899987899907759938999832
|
| >d1qnia2 b.69.3.1 (A:10-450) Nitrous oxide reductase, N-terminal domain {Pseudomonas nautica [TaxId: 2743]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Pseudomonas nautica [TaxId: 2743]
Probab=99.39 E-value=1.6e-12 Score=89.41 Aligned_cols=18 Identities=6% Similarity=-0.049 Sum_probs=7.8
Q ss_pred EEEEEECCCCCEEEEEEC
Q ss_conf 799999489999999982
Q 000602 351 IWRCLYDSLSSLLVTAGF 368 (1398)
Q Consensus 351 V~si~~spdg~~lvtgg~ 368 (1398)
...++++|+|+++++.+.
T Consensus 178 p~~v~~spdGk~a~vt~~ 195 (441)
T d1qnia2 178 LDNTDADYTGKYATSTCY 195 (441)
T ss_dssp CCCEEECSSSSEEEEEES
T ss_pred CCCEEECCCCCEEEEEEC
T ss_conf 654698799998999851
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.03 E-value=3.7e-07 Score=56.19 Aligned_cols=53 Identities=8% Similarity=0.062 Sum_probs=22.4
Q ss_pred CCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 89929999389946899920248657999994899999999828939999959
Q 000602 326 EDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 326 ~Dg~i~iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
.++.+.+++..++....+..........+++.+++.++++....+.+.+++.+
T Consensus 91 ~~~~i~~~~~~g~~~~~~~~~~~~~p~~~avd~~G~i~v~~~~~~~~~~~~~~ 143 (279)
T d1q7fa_ 91 PTHQIQIYNQYGQFVRKFGATILQHPRGVTVDNKGRIIVVECKVMRVIIFDQN 143 (279)
T ss_dssp GGCEEEEECTTSCEEEEECTTTCSCEEEEEECTTSCEEEEETTTTEEEEECTT
T ss_pred CCCCCCCCCCCCCCEEECCCCCCCCCCEECCCCCCCEEEEEECCCEEEEECCC
T ss_conf 75310000025630240388864254200001478479996326325676268
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.94 E-value=8e-07 Score=54.11 Aligned_cols=12 Identities=8% Similarity=0.008 Sum_probs=4.4
Q ss_pred EEEEECCCCCEE
Q ss_conf 999994899999
Q 000602 352 WRCLYDSLSSLL 363 (1398)
Q Consensus 352 ~si~~spdg~~l 363 (1398)
..++|+|+++++
T Consensus 196 r~i~f~pdg~~~ 207 (365)
T d1jofa_ 196 RWVAMHPTGNYL 207 (365)
T ss_dssp EEEEECTTSSEE
T ss_pred EEEEECCCCCEE
T ss_conf 899988998669
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.90 E-value=7.4e-07 Score=54.31 Aligned_cols=22 Identities=9% Similarity=0.157 Sum_probs=8.6
Q ss_pred EEEEEECCCCEEEEECCCCEEE
Q ss_conf 9999532998899961788199
Q 000602 584 MCLDASFEDEVLFCGDLRGNLV 605 (1398)
Q Consensus 584 tsl~~Spdg~lLatGs~dGtI~ 605 (1398)
+.+++.++|.++++-..++.|+
T Consensus 227 ~~i~~d~~g~l~vad~~~~rI~ 248 (260)
T d1rwia_ 227 LAVAVDSDRTVYVADRGNDRVV 248 (260)
T ss_dssp EEEEECTTCCEEEEEGGGTEEE
T ss_pred EEEEEECCCCEEEEECCCCEEE
T ss_conf 7999908999999979999899
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.85 E-value=1.7e-06 Score=52.12 Aligned_cols=27 Identities=7% Similarity=-0.032 Sum_probs=12.9
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 889999948999999997899099999
Q 000602 258 SIFRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 258 ~I~~iafspdg~~LvS~s~Dg~I~iWd 284 (1398)
.+..++++|||+++++...+++|+.|+
T Consensus 29 ~~e~iAv~pdG~l~vt~~~~~~I~~i~ 55 (302)
T d2p4oa1 29 FLENLASAPDGTIFVTNHEVGEIVSIT 55 (302)
T ss_dssp CEEEEEECTTSCEEEEETTTTEEEEEC
T ss_pred CCCCEEECCCCCEEEEECCCCEEEEEE
T ss_conf 847877999988999968899899990
|
| >d1q7fa_ b.68.9.1 (A:) Brain tumor cg10719-pa {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Brain tumor cg10719-pa species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=98.81 E-value=2.4e-06 Score=51.15 Aligned_cols=25 Identities=4% Similarity=0.082 Sum_probs=8.2
Q ss_pred EEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 9999948999999997899099999
Q 000602 260 FRIEWSSCGSKLVSVSDDRSARIWE 284 (1398)
Q Consensus 260 ~~iafspdg~~LvS~s~Dg~I~iWd 284 (1398)
..+++.+++..+++....+.|++|+
T Consensus 160 ~~i~~d~~g~i~v~d~~~~~V~~~d 184 (279)
T d1q7fa_ 160 NGVVVNDKQEIFISDNRAHCVKVFN 184 (279)
T ss_dssp EEEEECSSSEEEEEEGGGTEEEEEE
T ss_pred CEEEECCCEEEEEEECCCCCEEEEE
T ss_conf 2432012001786201355100230
|
| >d1jofa_ b.69.10.1 (A:) 3-carboxy-cis,cis-mucoante lactonizing enzyme {Neurospora crassa [TaxId: 5141]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: 3-carboxy-cis,cis-mucoante lactonizing enzyme family: 3-carboxy-cis,cis-mucoante lactonizing enzyme domain: 3-carboxy-cis,cis-mucoante lactonizing enzyme species: Neurospora crassa [TaxId: 5141]
Probab=98.67 E-value=6.6e-06 Score=48.45 Aligned_cols=13 Identities=15% Similarity=0.324 Sum_probs=4.6
Q ss_pred EEEEECCCCCEEE
Q ss_conf 9999948999999
Q 000602 352 WRCLYDSLSSLLV 364 (1398)
Q Consensus 352 ~si~~spdg~~lv 364 (1398)
.++.|+|++++++
T Consensus 148 h~v~~sPdG~~l~ 160 (365)
T d1jofa_ 148 HGMVFDPTETYLY 160 (365)
T ss_dssp EEEEECTTSSEEE
T ss_pred EEEEECCCCCEEE
T ss_conf 5978889999899
|
| >d2p4oa1 b.68.6.3 (A:4-305) Hypothetical protein All0351 homologue {Nostoc punctiforme [TaxId: 272131]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: All0351-like domain: Hypothetical protein All0351 homologue species: Nostoc punctiforme [TaxId: 272131]
Probab=98.63 E-value=8.3e-06 Score=47.83 Aligned_cols=30 Identities=17% Similarity=-0.079 Sum_probs=12.2
Q ss_pred CEEEEEECCCCCEEEEEECCCEEEEEECCC
Q ss_conf 889999948999999997899099999578
Q 000602 258 SIFRIEWSSCGSKLVSVSDDRSARIWEVRA 287 (1398)
Q Consensus 258 ~I~~iafspdg~~LvS~s~Dg~I~iWd~~~ 287 (1398)
..+.+++.++++++++.+.++.+..++...
T Consensus 114 ~~n~i~~~~~g~~~v~~~~~~~i~~~~~~~ 143 (302)
T d2p4oa1 114 FLNGITPLSDTQYLTADSYRGAIWLIDVVQ 143 (302)
T ss_dssp CEEEEEESSSSEEEEEETTTTEEEEEETTT
T ss_pred CCCEEEECCCCCEEEECCCCCCCEEEECCC
T ss_conf 221667715797875035655410242168
|
| >d1rwia_ b.68.9.1 (A:) Serine/threonine-protein kinase PknD {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: NHL repeat family: NHL repeat domain: Serine/threonine-protein kinase PknD species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.57 E-value=1.2e-05 Score=46.74 Aligned_cols=23 Identities=9% Similarity=0.043 Sum_probs=8.5
Q ss_pred EEEEECCCCEEEEECCCCEEEEE
Q ss_conf 99953299889996178819999
Q 000602 585 CLDASFEDEVLFCGDLRGNLVLF 607 (1398)
Q Consensus 585 sl~~Spdg~lLatGs~dGtI~iw 607 (1398)
.+++.++|+++++-...+.|+.+
T Consensus 186 gi~~d~~g~l~vsd~~~~~i~~~ 208 (260)
T d1rwia_ 186 GIAVDEAGTVYVTEHNTNQVVKL 208 (260)
T ss_dssp EEEECTTCCEEEEETTTTEEEEE
T ss_pred CCEEEEEEEEEEEECCCCEEEEE
T ss_conf 31231000134321489989999
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.49 E-value=2e-05 Score=45.44 Aligned_cols=15 Identities=7% Similarity=-0.040 Sum_probs=8.2
Q ss_pred EEEEEECCCCCEEEE
Q ss_conf 899999489999999
Q 000602 259 IFRIEWSSCGSKLVS 273 (1398)
Q Consensus 259 I~~iafspdg~~LvS 273 (1398)
..+++|.++|+++++
T Consensus 20 ~EGpa~d~dG~ly~~ 34 (314)
T d1pjxa_ 20 AEGPVFDKNGDFYIV 34 (314)
T ss_dssp CEEEEECTTSCEEEE
T ss_pred CEEEEEECCCCEEEE
T ss_conf 717399699999999
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.49 E-value=2.1e-05 Score=45.36 Aligned_cols=38 Identities=16% Similarity=0.061 Sum_probs=20.7
Q ss_pred CEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEE
Q ss_conf 299993899468999202486579999948999999998
Q 000602 329 TCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAG 367 (1398)
Q Consensus 329 ~i~iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg 367 (1398)
.|.+.|.+|.....+..... .+.+.+|+|||+.||-..
T Consensus 20 ~l~i~d~dG~~~~~l~~~~~-~~~sP~wSPDGk~IAf~~ 57 (269)
T d2hqsa1 20 ELRVSDYDGYNQFVVHRSPQ-PLMSPAWSPDGSKLAYVT 57 (269)
T ss_dssp EEEEEETTSCSCEEEEEESS-CEEEEEECTTSSEEEEEE
T ss_pred EEEEECCCCCCCEEEECCCC-CEEEEEECCCCCEEEEEE
T ss_conf 99999289997679865898-426038878999899998
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=2.7e-05 Score=44.63 Aligned_cols=11 Identities=36% Similarity=0.676 Sum_probs=4.0
Q ss_pred EECCCCCEEEE
Q ss_conf 99489999999
Q 000602 263 EWSSCGSKLVS 273 (1398)
Q Consensus 263 afspdg~~LvS 273 (1398)
-|||||++||.
T Consensus 179 ~WSPDgk~iaf 189 (465)
T d1xfda1 179 WWSPDGTRLAY 189 (465)
T ss_dssp EECTTSSEEEE
T ss_pred EECCCCCEEEE
T ss_conf 97798986899
|
| >d2hqsa1 b.68.4.1 (A:163-431) TolB, C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: TolB, C-terminal domain family: TolB, C-terminal domain domain: TolB, C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.44 E-value=2.8e-05 Score=44.58 Aligned_cols=18 Identities=17% Similarity=0.063 Sum_probs=7.1
Q ss_pred CCCEEEEEEEEECCCCCEEEE
Q ss_conf 876899999841389949999
Q 000602 132 SHWVFDVCFLKVCNGNRSLAI 152 (1398)
Q Consensus 132 ~~~V~~v~fsp~~~dg~~Lat 152 (1398)
.+......|+| ++..++.
T Consensus 82 ~~~~~~~~~sp---dg~~i~~ 99 (269)
T d2hqsa1 82 PRHNGAPAFSP---DGSKLAF 99 (269)
T ss_dssp SSCEEEEEECT---TSSEEEE
T ss_pred ECCCCCCEECC---CCCEEEE
T ss_conf 02454302448---8986467
|
| >d1pjxa_ b.68.6.1 (A:) Diisopropylfluorophosphatase (phosphotriesterase, DFP) {Squid (Loligo vulgaris) [TaxId: 6622]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Diisopropylfluorophosphatase (phosphotriesterase, DFP) species: Squid (Loligo vulgaris) [TaxId: 6622]
Probab=98.44 E-value=2.8e-05 Score=44.58 Aligned_cols=27 Identities=22% Similarity=0.193 Sum_probs=12.4
Q ss_pred EEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 999994899999999828939999959
Q 000602 352 WRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 352 ~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
..+++.+++..++++.....+...+..
T Consensus 74 ~Gl~~~~dg~~l~vad~~~~i~~~~~~ 100 (314)
T d1pjxa_ 74 AGCQCDRDANQLFVADMRLGLLVVQTD 100 (314)
T ss_dssp EEEEECSSSSEEEEEETTTEEEEEETT
T ss_pred EEEEEECCCCEEEEEECCCEEEEEECC
T ss_conf 069990799989999779839999477
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=98.36 E-value=4.2e-05 Score=43.48 Aligned_cols=24 Identities=13% Similarity=0.171 Sum_probs=12.0
Q ss_pred EEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 999532998899961788199998
Q 000602 585 CLDASFEDEVLFCGDLRGNLVLFP 608 (1398)
Q Consensus 585 sl~~Spdg~lLatGs~dGtI~iwd 608 (1398)
.+++..+|++.++....+.|.+|+
T Consensus 232 Gl~vD~~G~l~Va~~~~g~V~~~~ 255 (319)
T d2dg1a1 232 SCCIDSDDNLYVAMYGQGRVLVFN 255 (319)
T ss_dssp EEEEBTTCCEEEEEETTTEEEEEC
T ss_pred EEEECCCCCEEEEECCCCEEEEEC
T ss_conf 641738999999984899899997
|
| >d1xfda1 b.70.3.1 (A:127-591) Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: DPP6 N-terminal domain-like family: DPP6 N-terminal domain-like domain: Dipeptidyl aminopeptidase-like protein 6, DPP6, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=5e-05 Score=42.98 Aligned_cols=17 Identities=6% Similarity=-0.054 Sum_probs=6.3
Q ss_pred EEECCCEEEEEECCCCE
Q ss_conf 99119909999908938
Q 000602 426 HLTSEDTLYIATNHGYL 442 (1398)
Q Consensus 426 afs~dg~llv~t~~g~i 442 (1398)
.|+|+|..++-..++.+
T Consensus 120 ~wSPDG~~iafv~~~nl 136 (465)
T d1xfda1 120 GWGPKGQQLIFIFENNI 136 (465)
T ss_dssp CBCSSTTCEEEEETTEE
T ss_pred EECCCCCEEEEEECCEE
T ss_conf 24267856999961329
|
| >d2dg1a1 b.68.6.1 (A:6-324) Lactonase Drp35 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Lactonase Drp35 species: Staphylococcus aureus [TaxId: 1280]
Probab=97.92 E-value=0.00034 Score=37.85 Aligned_cols=25 Identities=12% Similarity=0.177 Sum_probs=8.7
Q ss_pred CEEEEEECCCCEEEECCCCCEEEEE
Q ss_conf 9899995899299993899468999
Q 000602 319 SFIITAGEDCTCRVWGSDGKQLKMI 343 (1398)
Q Consensus 319 ~~lvsgs~Dg~i~iWd~~g~~l~~l 343 (1398)
++.++....+.|.+|+.+++.+..+
T Consensus 240 ~l~Va~~~~g~V~~~~p~G~~l~~i 264 (319)
T d2dg1a1 240 NLYVAMYGQGRVLVFNKRGYPIGQI 264 (319)
T ss_dssp CEEEEEETTTEEEEECTTSCEEEEE
T ss_pred CEEEEECCCCEEEEECCCCCEEEEE
T ss_conf 9999984899899997999598899
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=97.13 E-value=0.0039 Score=31.32 Aligned_cols=26 Identities=8% Similarity=0.163 Sum_probs=16.0
Q ss_pred EEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf 995329988999617881999987974
Q 000602 586 LDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 586 l~~Spdg~lLatGs~dGtI~iwd~~~~ 612 (1398)
..|+|||+.|+. ..++.|+++++..+
T Consensus 238 ~~~SpDG~~I~f-~~~~~l~~~d~~~g 263 (281)
T d1k32a2 238 RHLNTDGRRILF-SKGGSIYIFNPDTE 263 (281)
T ss_dssp EEEEESSSCEEE-EETTEEEEECTTTC
T ss_pred CCCCCCCCEEEE-EECCEEEEEECCCC
T ss_conf 328679899999-85999999989999
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.96 E-value=0.0056 Score=30.35 Aligned_cols=46 Identities=4% Similarity=-0.072 Sum_probs=19.6
Q ss_pred CEEEEEEC--CCEEEEEECCCCEEEECCCCCEEEEEECCCCCCEEEEEE
Q ss_conf 47999991--998999958992999938994689992024865799999
Q 000602 310 RVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLY 356 (1398)
Q Consensus 310 ~V~~i~~s--~~~lvsgs~Dg~i~iWd~~g~~l~~l~~h~~~~V~si~~ 356 (1398)
....+++. +++.++.-..+.|..|+.+++.+..+..... .+++++|
T Consensus 200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp~G~~~~~i~lP~~-~~T~~~F 247 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARWGEGAVDRYDTDGNHIARYEVPGK-QTTCPAF 247 (295)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECTTCCEEEEEECSCS-BEEEEEE
T ss_pred CCCCEEECCCCCEEEEEECCCCEEEECCCCCEEEEECCCCC-CEEEEEE
T ss_conf 66326786999989532078846885699928668638998-5279898
|
| >d2ghsa1 b.68.6.1 (A:20-314) Regucalcin {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Calcium-dependent phosphotriesterase family: SGL-like domain: Regucalcin species: Agrobacterium tumefaciens [TaxId: 358]
Probab=96.94 E-value=0.0058 Score=30.25 Aligned_cols=28 Identities=7% Similarity=-0.116 Sum_probs=16.5
Q ss_pred CEEEEEEECCCCEEEEECCCCEEEEEEC
Q ss_conf 1899995329988999617881999987
Q 000602 582 RIMCLDASFEDEVLFCGDLRGNLVLFPL 609 (1398)
Q Consensus 582 ~Itsl~~Spdg~lLatGs~dGtI~iwd~ 609 (1398)
..-.+++..+|.+.++....|.|..|+-
T Consensus 200 ~pdG~~vD~~GnlWva~~~~g~V~~~dp 227 (295)
T d2ghsa1 200 GMDGSVCDAEGHIWNARWGEGAVDRYDT 227 (295)
T ss_dssp EEEEEEECTTSCEEEEEETTTEEEEECT
T ss_pred CCCCEEECCCCCEEEEEECCCCEEEECC
T ss_conf 6632678699998953207884688569
|
| >d1w6sa_ b.70.1.1 (A:) Methanol dehydrogenase, heavy chain {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylobacterium extorquens [TaxId: 408]
Probab=94.55 E-value=0.065 Score=23.74 Aligned_cols=21 Identities=10% Similarity=0.096 Sum_probs=10.1
Q ss_pred CEEEEEECCCCEEEEEECCCC
Q ss_conf 699999289979999971785
Q 000602 485 DWVALGDGKGNMTIVRVVGDV 505 (1398)
Q Consensus 485 ~~la~gs~dG~I~Iwdl~~~~ 505 (1398)
+.++..+.+|.+++++..+++
T Consensus 324 ~~v~~~~k~G~~~vlDr~tG~ 344 (596)
T d1w6sa_ 324 KLLTHPDRNGIVYTLDRTDGA 344 (596)
T ss_dssp EEEEEECTTSEEEEEETTTCC
T ss_pred CCEECCCCCCCEEEECCCCCC
T ss_conf 210014654322540677882
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.54 E-value=0.065 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.285 Sum_probs=13.8
Q ss_pred EEEEECCCCEEEEECCCCEEEEEECCCC
Q ss_conf 9995329988999617881999987974
Q 000602 585 CLDASFEDEVLFCGDLRGNLVLFPLLRD 612 (1398)
Q Consensus 585 sl~~Spdg~lLatGs~dGtI~iwd~~~~ 612 (1398)
++..|+.-.++.+-++.|.+++||++++
T Consensus 260 amqvs~kygiiyviTK~G~i~lyDleTg 287 (327)
T d1utca2 260 AMQISEKHDVVFLITKYGYIHLYDLETG 287 (327)
T ss_dssp EEEEETTTTEEEEEETTSEEEEEETTTC
T ss_pred EEEEECCCCEEEEEECCCEEEEEECCCC
T ss_conf 9996433799999966758999975666
|
| >d2ad6a1 b.70.1.1 (A:1-571) Methanol dehydrogenase, heavy chain {Methylophilus methylotrophus, w3a1 [TaxId: 17]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Methanol dehydrogenase, heavy chain species: Methylophilus methylotrophus, w3a1 [TaxId: 17]
Probab=94.32 E-value=0.073 Score=23.43 Aligned_cols=28 Identities=0% Similarity=-0.269 Sum_probs=12.9
Q ss_pred EEEEEECCCCEEEEECCCCEEEEEEECC
Q ss_conf 1796012641999928663199875216
Q 000602 706 NYAAGFASTDFIIWNLITEAKVVQIPCG 733 (1398)
Q Consensus 706 ~~v~Gf~s~~~~iWn~~~~~el~~i~CG 733 (1398)
++++|..++.|..+|..+.++|.+...+
T Consensus 477 lVf~G~~dg~l~A~Da~tGe~lW~~~l~ 504 (571)
T d2ad6a1 477 LVWYATLDGYLKALDNKDGKELWNFKMP 504 (571)
T ss_dssp EEEEECTTSEEEEEETTTCCEEEEEECS
T ss_pred EEEEECCCCEEEEEECCCCCEEEEEECC
T ss_conf 7999778996999999998687899899
|
| >d1kv9a2 b.70.1.1 (A:1-560) Quinoprotein alcohol dehydrogenase, N-terminal domain {Pseudomonas putida, hk5 [TaxId: 303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Pseudomonas putida, hk5 [TaxId: 303]
Probab=94.27 E-value=0.075 Score=23.36 Aligned_cols=23 Identities=9% Similarity=-0.031 Sum_probs=10.3
Q ss_pred EEEECCCEEEEEECCCCEEEEEE
Q ss_conf 99988990999995799199998
Q 000602 151 AIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 151 atgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
.+++.++.|.-.|..+++.+.++
T Consensus 70 yv~t~~~~v~AlDa~tG~~lW~~ 92 (560)
T d1kv9a2 70 YTSMSWSRVIAVDAASGKELWRY 92 (560)
T ss_dssp EEEEGGGEEEEEETTTCCEEEEE
T ss_pred EEECCCCEEEEEECCCCCEEEEE
T ss_conf 99789995999968999879887
|
| >d1utca2 b.69.6.1 (A:4-330) Clathrin heavy-chain terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Clathrin heavy-chain terminal domain family: Clathrin heavy-chain terminal domain domain: Clathrin heavy-chain terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=92.55 E-value=0.14 Score=21.63 Aligned_cols=37 Identities=8% Similarity=0.223 Sum_probs=20.2
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCC
Q ss_conf 99984138994999998899099999579919999834886
Q 000602 138 VCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPER 178 (1398)
Q Consensus 138 v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~ 178 (1398)
.-.+| ..+.||.-+ ..++.++|+++.+.+..+.-++.
T Consensus 68 AIMhP---~~~IiALra-g~~LQiFnletK~klks~~~~e~ 104 (327)
T d1utca2 68 AIMNP---ASKVIALKA-GKTLQIFNIEMKSKMKAHTMTDD 104 (327)
T ss_dssp EEECS---SSSEEEEEE-TTEEEEEETTTTEEEEEEECSSC
T ss_pred HHCCC---CCCEEEEEC-CCEEEEEEHHHHHHHCEEECCCC
T ss_conf 53088---875799962-88689984468221115876888
|
| >d1fwxa2 b.69.3.1 (A:8-451) Nitrous oxide reductase, N-terminal domain {Paracoccus denitrificans [TaxId: 266]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Nitrous oxide reductase, N-terminal domain family: Nitrous oxide reductase, N-terminal domain domain: Nitrous oxide reductase, N-terminal domain species: Paracoccus denitrificans [TaxId: 266]
Probab=92.21 E-value=0.16 Score=21.36 Aligned_cols=190 Identities=11% Similarity=0.044 Sum_probs=91.7
Q ss_pred CCCEEEEEE-CCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCC
Q ss_conf 994999998-8990999995799199998348863189998623798885999997999099999246876666899998
Q 000602 146 GNRSLAIGC-SDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEG 224 (1398)
Q Consensus 146 dg~~Latgs-~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~ 224 (1398)
||++|.+.. .+++|.+.|+.+.+....+..+.......++... .++..+++.++.+..- ... ..
T Consensus 98 DGrylFVNDkan~RVAvIdl~~fkt~kIi~iPn~~~~HG~r~~~-~p~T~YV~~~~e~~vP------------~pn--dg 162 (459)
T d1fwxa2 98 DGRFLFMNDKANTRVARVRCDVMKCDAILEIPNAKGIHGLRPQK-WPRSNYVFCNGEDETP------------LVN--DG 162 (459)
T ss_dssp EEEEEEEEETTTTEEEEEETTTTEEEEEEECSSCCSEEEEEECC-SSBCSEEEEEECSCEE------------SSC--SS
T ss_pred CEEEEEEECCCCCEEEEEECCCEEEEEEEECCCCCCCCEEECCC-CCCEEEEECCCCCCCC------------CCC--CC
T ss_conf 51289997589863899988540566799667887775012025-7974799736765444------------599--98
Q ss_pred CCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCE--EEEEECCCCCCCCCCCCEEEEEE
Q ss_conf 7778988876202531356640579999276688899999489999999978990--99999578941388870376304
Q 000602 225 NHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRS--ARIWEVRAEYWKDSDSIEEVGSS 302 (1398)
Q Consensus 225 ~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~--I~iWd~~~~~~~~~~~~~~i~~~ 302 (1398)
...+........+...+.. +.+....+. -.+....+.++++|+++++.+.+.. +.+-++...
T Consensus 163 ~~l~d~~~y~~~~t~ID~~-tm~V~~QV~-V~g~ld~~~~s~dGK~af~TsyNSE~g~~l~e~ta~-------------- 226 (459)
T d1fwxa2 163 TNMEDVANYVNVFTAVDAD-KWEVAWQVL-VSGNLDNCDADYEGKWAFSTSYNSEKGMTLPEMTAA-------------- 226 (459)
T ss_dssp SSTTCGG-EEEEEEEEETT-TTEEEEEEE-ESSCCCCEEECSSSSEEEEEESCTTCCSSHHHHTCC--------------
T ss_pred CCCCCHHHCCEEEEEEECC-CCEEEEEEE-ECCCHHCCCCCCCCCEEEEEECCCCCCCCHHHCCCC--------------
T ss_conf 5132401122689999667-766989964-089720153189999899971355688532222524--------------
Q ss_pred EEECCCCCEEEEEEC----------CCEEEEEECCCCEEEECCC---C-CEEEEEECCCCCCEEEEEECCCCCEEEEEE-
Q ss_conf 874088447999991----------9989999589929999389---9-468999202486579999948999999998-
Q 000602 303 VLYGHNARVWDCCLT----------DSFIITAGEDCTCRVWGSD---G-KQLKMIKEHIGRGIWRCLYDSLSSLLVTAG- 367 (1398)
Q Consensus 303 ~~~gh~~~V~~i~~s----------~~~lvsgs~Dg~i~iWd~~---g-~~l~~l~~h~~~~V~si~~spdg~~lvtgg- 367 (1398)
..-+.+.+. +++-.. +.+.+-|.. + ..+..+..... ...+.++|||++++.++
T Consensus 227 ------e~D~i~V~n~~rie~av~~Gk~~ei----ngV~VVD~~~~~~~~v~~yIPVpKs--PHGV~vSPDGKyi~VaGK 294 (459)
T d1fwxa2 227 ------EMDHIVVFNIAEIEKAIAAGDYQEL----NGVKVVDGRKEASSLFTRYIPIANN--PHGCNMAPDKKHLCVAGK 294 (459)
T ss_dssp ------SEEEEEEEEHHHHHHHHHHTCSEEE----TTEEEEECSGG--CSSEEEEEEESS--CCCEEECTTSSEEEEECT
T ss_pred ------CCEEEEEECHHHHHHHHHCCCCEEE----CCCEEECCCCCCCCCEEEEEECCCC--CCCEEECCCCCEEEEECC
T ss_conf ------5418999634886876405993796----9946615423678520389865898--773388999978999388
Q ss_pred CCCCEEEEECC
Q ss_conf 28939999959
Q 000602 368 FDSAIKVHQFQ 378 (1398)
Q Consensus 368 ~Dg~I~iwdl~ 378 (1398)
.+.++-++|++
T Consensus 295 Ls~tVSViD~~ 305 (459)
T d1fwxa2 295 LSPTVTVLDVT 305 (459)
T ss_dssp TSSBEEEEEGG
T ss_pred CCCCEEEEEEH
T ss_conf 58957999822
|
| >d1k3ia3 b.69.1.1 (A:151-537) Galactose oxidase, central domain {Fungi (Fusarium sp.) [TaxId: 29916]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 7-bladed beta-propeller superfamily: Galactose oxidase, central domain family: Galactose oxidase, central domain domain: Galactose oxidase, central domain species: Fungi (Fusarium sp.) [TaxId: 29916]
Probab=92.19 E-value=0.16 Score=21.35 Aligned_cols=330 Identities=7% Similarity=-0.049 Sum_probs=0.0
Q ss_pred CCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCE-----------EEEEECCCCEE--EEEECCCCCCE
Q ss_conf 888632111155531468876899999841389949999988990-----------99999579919--99983488631
Q 000602 114 YQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNS-----------IRVWDISNSSI--ILEVHSPERCL 180 (1398)
Q Consensus 114 ~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~-----------I~iWdl~~~~~--~~~l~~~~~~~ 180 (1398)
|.+.....++-......-...+....... +++.++.|+.+.. +.+||..++.. ......+....
T Consensus 1 ~~~~~p~~g~W~~~~~~p~~~~~~a~~~~---~gkv~v~GG~~~~~~~~~~~~~~~~~~yd~~t~~w~~~~~~~~~~~~~ 77 (387)
T d1k3ia3 1 YTAPQPGLGRWGPTIDLPIVPAAAAIEPT---SGRVLMWSSYRNDAFGGSPGGITLTSSWDPSTGIVSDRTVTVTKHDMF 77 (387)
T ss_dssp CCCCCTTSCEEEEEEECSSCCSEEEEETT---TTEEEEEEECCCTTTCSCCCSEEEEEEECTTTCCBCCCEEEECSCCCS
T ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEEEEE---CCEEEEEEEECCCCCCCCCCCEEEEEEEECCCCCEEECCCCCCCCCCC
T ss_conf 98788978716786889861017899925---999999984057666788776068999988889686667789874452
Q ss_pred EEEEEEECCCCCCCEEEEEECC-CEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCE
Q ss_conf 8999862379888599999799-909999924687666689999877789888762025313566405799992766888
Q 000602 181 LYSMKLWGDNLEALRIASGTIY-NEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSI 259 (1398)
Q Consensus 181 ~~sv~~~~~s~d~~~iasgs~d-g~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I 259 (1398)
.....+ ..++.+++.|+.+ ..+.+||.. ...-...........-
T Consensus 78 ~~~~~~---~~~g~i~v~Gg~~~~~~~~yd~~--------------------------------~~~w~~~~~~~~~r~~ 122 (387)
T d1k3ia3 78 CPGISM---DGNGQIVVTGGNDAKKTSLYDSS--------------------------------SDSWIPGPDMQVARGY 122 (387)
T ss_dssp SCEEEE---CTTSCEEEECSSSTTCEEEEEGG--------------------------------GTEEEECCCCSSCCSS
T ss_pred EEEEEE---ECCCCEEEEECCCCCCEEEECCC--------------------------------CCCCCCCCCCCCCCCC
T ss_conf 568999---46886898636888621675675--------------------------------5744215656642101
Q ss_pred EEEEECCCCCEEEEEECC------CEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC-------CCEEEEEEC
Q ss_conf 999994899999999789------9099999578941388870376304874088447999991-------998999958
Q 000602 260 FRIEWSSCGSKLVSVSDD------RSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT-------DSFIITAGE 326 (1398)
Q Consensus 260 ~~iafspdg~~LvS~s~D------g~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s-------~~~lvsgs~ 326 (1398)
...+..+|++.++.++.+ ..+.+||..+..- ..+..-.......... ...++.+..
T Consensus 123 ~~~~~~~dG~v~v~GG~~~~~~~~~~v~~yd~~~~~W-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (387)
T d1k3ia3 123 QSSATMSDGRVFTIGGSWSGGVFEKNGEVYSPSSKTW-----------TSLPNAKVNPMLTADKQGLYRSDNHAWLFGWK 191 (387)
T ss_dssp CEEEECTTSCEEEECCCCCSSSCCCCEEEEETTTTEE-----------EEETTSCSGGGCCCCTTGGGTTTCSCCEEECG
T ss_pred CCEEEECCCCEEEECCCCCCCCCCCEEEEECCCCCCE-----------EECCCCCCCCCCCCCCCCEEECCCEEEEEEEC
T ss_conf 3035531782665213663335432056634888955-----------11588764431134665136504226999707
Q ss_pred CCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEEC
Q ss_conf 99299993899468999202486579999948999999998289399999598875532478764101687307996527
Q 000602 327 DCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIP 406 (1398)
Q Consensus 327 Dg~i~iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~ 406 (1398)
++.+.++.-.......+..... ........+...........+.-.+.......+..+-+...................
T Consensus 192 ~G~~~~~g~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~v~v~GG~~~~~~~~~~~~~~~~~~~ 270 (387)
T d1k3ia3 192 KGSVFQAGPSTAMNWYYTSGSG-DVKSAGKRQSNRGVAPDAMCGNAVMYDAVKGKILTFGGSPDYQDSDATTNAHIITLG 270 (387)
T ss_dssp GGCEEECCSSSEEEEEECSTTC-EEEEEEECEETTEECCCCBTCEEEEEETTTTEEEEECCBSSSSSSBCCCCEEEEECC
T ss_pred CCCEEEECCCCCCEEECCCCCC-CEEECCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEEECCCCCCCCCCCEEECCCCC
T ss_conf 9877874686774781486667-173166556676657632226378861358824788753678877521000001111
Q ss_pred CCCCCEEECCC-----CCCCEEEEEEECCCEEEEEEC---------CCCEEEEEEECCCCCEEEEEEEECCCCCEEEEEC
Q ss_conf 97542341167-----897479999911990999990---------8938999950388850489785248963999850
Q 000602 407 NFSEQIRLTDS-----KSEYVRCLHLTSEDTLYIATN---------HGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDL 472 (1398)
Q Consensus 407 ~~~~~~~~~~~-----~~~~V~~iafs~dg~llv~t~---------~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~ 472 (1398)
........+.. ....-.+....+++++++.+. ...+....+++....+|..+......+...+..+
T Consensus 271 ~~~~~~~~~~~~~~~p~~r~~~~~~~~~dg~i~v~GG~~~~~~~~~~~~~~~ve~Ydp~~~~W~~~~~~~~~R~~Hs~a~ 350 (387)
T d1k3ia3 271 EPGTSPNTVFASNGLYFARTFHTSVVLPDGSTFITGGQRRGIPFEDSTPVFTPEIYVPEQDTFYKQNPNSIVRVYHSISL 350 (387)
T ss_dssp STTSCCEEEECTTCCSSCCBSCEEEECTTSCEEEECCBSBCCTTCCCSBCCCCEEEEGGGTEEEECCCCSSCCCTTEEEE
T ss_pred CCCCCCCCEEECCCCCCCCCCCEEEECCCCEEEEECCCCCCCCCCCCCEECEEEEEECCCCEEEECCCCCCCCCCEEEEE
T ss_conf 13567884060366566543433566058749998884567668899470107989799991887889997553127999
Q ss_pred CCCCCCCCCCCCCEEEEEE--------CCCCEEEEE
Q ss_conf 6899988689996999992--------899799999
Q 000602 473 LSNEPKYPCGIDDWVALGD--------GKGNMTIVR 500 (1398)
Q Consensus 473 ~~~~~~~s~~~~~~la~gs--------~dG~I~Iwd 500 (1398)
.. +++++++.|+ ....+.+|+
T Consensus 351 l~-------~dG~v~v~GG~~~~~~~~~~~~~e~y~ 379 (387)
T d1k3ia3 351 LL-------PDGRVFNGGGGLCGDCTTNHFDAQIFT 379 (387)
T ss_dssp EC-------TTSCEEEEECCCCTTCSCCCCEEEEEE
T ss_pred EC-------CCCEEEEEECCCCCCCCCCCCEEEEEC
T ss_conf 98-------899999996987678886611489982
|
| >d1k32a2 b.68.7.1 (A:39-319) Tricorn protease N-terminal domain {Archaeon Thermoplasma acidophilum [TaxId: 2303]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: Tricorn protease N-terminal domain family: Tricorn protease N-terminal domain domain: Tricorn protease N-terminal domain species: Archaeon Thermoplasma acidophilum [TaxId: 2303]
Probab=91.53 E-value=0.19 Score=20.90 Aligned_cols=14 Identities=7% Similarity=-0.069 Sum_probs=5.1
Q ss_pred EEEEEECCCCCEEE
Q ss_conf 79999948999999
Q 000602 351 IWRCLYDSLSSLLV 364 (1398)
Q Consensus 351 V~si~~spdg~~lv 364 (1398)
+....|+|||++|+
T Consensus 43 ~~~p~~SPDG~~ia 56 (281)
T d1k32a2 43 INNARFFPDGRKIA 56 (281)
T ss_dssp EEEEEECTTSSEEE
T ss_pred CCCEEECCCCCEEE
T ss_conf 26779878999899
|
| >d1npea_ b.68.5.1 (A:) Nidogen {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 6-bladed beta-propeller superfamily: YWTD domain family: YWTD domain domain: Nidogen species: Mouse (Mus musculus) [TaxId: 10090]
Probab=90.33 E-value=0.24 Score=20.20 Aligned_cols=12 Identities=8% Similarity=0.266 Sum_probs=4.4
Q ss_pred EEEEEECCCCCE
Q ss_conf 899999489999
Q 000602 259 IFRIEWSSCGSK 270 (1398)
Q Consensus 259 I~~iafspdg~~ 270 (1398)
+.+++|.+..+.
T Consensus 38 ~~~ld~D~~~~~ 49 (263)
T d1npea_ 38 IIGLAFDCVDKV 49 (263)
T ss_dssp EEEEEEETTTTE
T ss_pred EEEEEEEECCCE
T ss_conf 799999858999
|
| >d1kb0a2 b.70.1.1 (A:1-573) Quinoprotein alcohol dehydrogenase, N-terminal domain {Comamonas testosteroni [TaxId: 285]} | Back information, alignment and structure |
|---|
class: All beta proteins fold: 8-bladed beta-propeller superfamily: Quinoprotein alcohol dehydrogenase-like family: Quinoprotein alcohol dehydrogenase-like domain: Quinoprotein alcohol dehydrogenase, N-terminal domain species: Comamonas testosteroni [TaxId: 285]
Probab=83.47 E-value=0.6 Score=17.77 Aligned_cols=24 Identities=13% Similarity=0.126 Sum_probs=11.7
Q ss_pred EEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 999988990999995799199998
Q 000602 150 LAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 150 Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
|.+++.++.|.-+|..+++.+.++
T Consensus 80 vyv~t~~~~v~AlDa~TG~~~W~~ 103 (573)
T d1kb0a2 80 MYVSASWSVVHAIDTRTGNRIWTY 103 (573)
T ss_dssp EEEECGGGCEEEEETTTTEEEEEE
T ss_pred EEEECCCCEEEEEECCCCCEEEEE
T ss_conf 999789996999958999858786
|