Query 000603
Match_columns 1398
No_of_seqs 651 out of 3682
Neff 8.5
Searched_HMMs 29240
Date Tue Mar 26 17:13:55 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000603.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_375-379//hhsearch_pdb/000603hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ymu_A WD-40 repeat protein; u 1.0 1 1 482.8 73.8 558 16-904 15-577 (577)
2 1nr0_A Actin interacting prote 1.0 1 1 478.8 66.7 589 6-906 7-610 (611)
3 1nr0_A Actin interacting prote 1.0 1 1 471.5 71.1 505 3-672 38-568 (611)
4 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 465.9 61.0 627 16-905 614-1247(1249)
5 2ymu_A WD-40 repeat protein; u 1.0 1 1 457.6 70.8 526 55-904 7-536 (577)
6 3sfz_A APAF-1, apoptotic pepti 1.0 1 1 451.3 57.4 537 58-908 609-1159(1249)
7 1pgu_A Actin interacting prote 1.0 1 1 436.9 65.3 582 5-907 6-614 (615)
8 1pgu_A Actin interacting prote 1.0 1 1 418.4 62.0 528 2-832 37-614 (615)
9 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 404.8 64.9 581 130-908 15-662 (902)
10 2oaj_A Protein SNI1; WD40 repe 1.0 1 1 380.2 62.7 524 6-671 6-661 (902)
No 1
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=482.77 Aligned_cols=558 Identities=17% Similarity=0.276 Sum_probs=434.7
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 036349999972189889988999980-8919999889993887998660834899997103464589875210099999
Q 000603 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.++|++++|+ || |++||+|+ |+.|+|||. ++++++++.+|.+ .|.+++|+ |++ .+|+++
T Consensus 15 H~~~V~~~a~s--pd----g~~las~~~d~~v~iWd~-~~~~~~~l~gh~~-~V~~l~fs-------pdg----~~las~ 75 (577)
T 2ymu_A 15 HSSSVRGVAFS--PD----GQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVWGVAFS-------PDG----QTIASA 75 (577)
T ss_dssp CSSCEEEEEEC--TT----SSCEEEEETTSEEEEECT-TSCEEEEEECCSS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEEC-CCCEEEEEECCCC-CEEEEEEC-------CCC----CEEEEE
T ss_conf 99857999998--99----899999938998999979-9978999968989-98999998-------999----999999
Q ss_pred C-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 4-996999991478899998888632111155531468876899999841389949999988990999995799199998
Q 000603 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
+ |++|++||+. .+++..+.+|...|.+++|+| ++.+|++++.|+.+++|+...... ...
T Consensus 76 ~~d~~i~vWd~~----------------~~~~~~~~~~~~~v~~~~~s~---d~~~l~~~~~d~~~~~~~~~~~~~-~~~ 135 (577)
T 2ymu_A 76 SDDKTVKLWNRN----------------GQLLQTLTGHSSSVRGVAFSP---DGQTIASASDDKTVKLWNRNGQLL-QTL 135 (577)
T ss_dssp ETTSCEEEEETT----------------SCEEEEECCCSSCEEEEEECT---TSSEEEEEETTSCEEEEETTCCEE-EEE
T ss_pred ECCCEEEEEECC----------------CCEEEEEECCCCCEEEEEECC---CCCEEEEECCCCCEEECCCCCCEE-EEC
T ss_conf 698979999899----------------978999978999889999989---999899980798335202355200-110
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 34886318999862379888599999799909999924687666689999877789888762025313566405799992
Q 000603 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~ 253 (1398)
..+. ..++.+.+ +++...+++++.++.+.+|+.. ........
T Consensus 136 ~~~~-~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~----------------------------------~~~~~~~~ 177 (577)
T 2ymu_A 136 TGHS-SSVWGVAF---SPDGQTIASASDDKTVKLWNRN----------------------------------GQLLQTLT 177 (577)
T ss_dssp CCCS-SCEEEEEE---CTTSSCEEEEETTSEEEEECTT----------------------------------SCEEEEEE
T ss_pred CCCC-CCEEEEEE---ECCCCCCEECCCCCCEECCCCC----------------------------------EEEEEECC
T ss_conf 4777-74355542---0377632002555310000000----------------------------------00000026
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 7668889999948999999997899099999578941388870376304874088447999991--99899995899299
Q 000603 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 254 gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~ 331 (1398)
.|...|..+.++|++.++++++.|+.|++|+...... ..+.+|...|.+++|+ +.+|++++.|+.++
T Consensus 178 ~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~-----------~~~~~~~~~v~~~~~s~dg~~l~~~~~d~~i~ 246 (577)
T 2ymu_A 178 GHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL-----------QTLTGHSSSVRGVAFSPDGQTIASASDDKTVK 246 (577)
T ss_dssp CCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE-----------EEEECCSSCEEEEEECTTSSCEEEEETTSCEE
T ss_pred CCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEE-----------EEEECCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 8776356654169977899985999899994999689-----------99946889889999979999999991899899
Q ss_pred EECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCC
Q ss_conf 99389946899920248657999994899999999828939999959887553247876410168730799652797542
Q 000603 332 VWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQ 411 (1398)
Q Consensus 332 iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~ 411 (1398)
+|+.+++.+..+.+|.. .|.+++|+|++.++++++.|+.+++|+..+..++.+
T Consensus 247 ~w~~~~~~~~~~~~~~~-~v~~v~~~~d~~~l~~~~~d~~i~~w~~~~~~~~~~-------------------------- 299 (577)
T 2ymu_A 247 LWNRNGQLLQTLTGHSS-SVNGVAFRPDGQTIASASDDKTVKLWNRNGQLLQTL-------------------------- 299 (577)
T ss_dssp EECTTSCEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETTSCEEEEE--------------------------
T ss_pred EEECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEE--------------------------
T ss_conf 99599979999806889-879999968999999995999799994899589997--------------------------
Q ss_pred EEECCCCCCCEEEEEEECCCEEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEE
Q ss_conf 3411678974799999119909999-908938999950388850489785248963999850689998868999699999
Q 000603 412 IRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALG 490 (1398)
Q Consensus 412 ~~~~~~~~~~V~~iafs~dg~llv~-t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~g 490 (1398)
.+|...|.+++|+|++.++++ +.++.+..| +...... .....+ ..++.++.+ .+++.+++++
T Consensus 300 ----~~h~~~v~~~~~~~~~~~l~t~~~d~~i~~w---~~~~~~~-~~~~~~-~~~v~~~~~--------s~~g~~l~~~ 362 (577)
T 2ymu_A 300 ----TGHSSSVWGVAFSPDGQTIASASDDKTVKLW---NRNGQHL-QTLTGH-SSSVWGVAF--------SPDGQTIASA 362 (577)
T ss_dssp ----CCCSSCEEEEEECTTSSEEEEEETTSCEEEE---ETTSCEE-EEECCC-SSCEEEEEE--------CTTSSEEEEE
T ss_pred ----ECCCCCEEEEEECCCCCEEEEEECCCEEEEE---ECCCCEE-EEEECC-CCCEEEEEE--------CCCCCEEEEE
T ss_conf ----0688976999999999999999699959999---6999725-787478-897799999--------8999999999
Q ss_pred ECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEE
Q ss_conf 28997999997178546511356664047534166899975199929999818993999956899986432367642021
Q 000603 491 DGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVF 570 (1398)
Q Consensus 491 s~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~ 570 (1398)
+.||.+++|+... ... .... .+...+.. +++++++++|++++.|+.|++|+....
T Consensus 363 ~~dg~v~~~~~~~-~~~------~~~~-~~~~~v~~--~~~s~dg~~l~~~~~d~~v~~~~~~~~--------------- 417 (577)
T 2ymu_A 363 SDDKTVKLWNRNG-QLL------QTLT-GHSSSVRG--VAFSPDGQTIASASDDKTVKLWNRNGQ--------------- 417 (577)
T ss_dssp ETTSEEEEEETTC-CEE------EEEE-CCSSCEEE--EEECTTSSCEEEEETTSEEEEECTTCC---------------
T ss_pred ECCCEEEEECCCC-CEE------EEEC-CCCCCEEE--EEECCCCCEEEEEECCCEEEEEECCCC---------------
T ss_conf 6999899990899-789------9852-78897489--999899999999949998999969997---------------
Q ss_pred EEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEECC
Q ss_conf 11111134698189999532998899961788199998797433564544301105630001345764489999974089
Q 000603 571 LVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRS 650 (1398)
Q Consensus 571 l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~ 650 (1398)
+... ...|...|++++|+||+++|++++.|++|++|+.... .. ..+. .|. ..|++++|+ +
T Consensus 418 ~~~~-~~~~~~~v~~~~~s~d~~~l~~~~~d~~v~~w~~~~~--------~~------~~~~-~~~-~~v~~~~~s---p 477 (577)
T 2ymu_A 418 LLQT-LTGHSSSVWGVAFSPDDQTIASASDDKTVKLWNRNGQ--------LL------QTLT-GHS-SSVRGVAFS---P 477 (577)
T ss_dssp EEEE-EECCSSCEEEEEECTTSSEEEEEETTSEEEEEETTSC--------EE------EEEE-CCS-SCEEEEEEC---T
T ss_pred EEEE-ECCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCC--------EE------EEEC-CCC-CCEEEEEEC---C
T ss_conf 8989-6288997579999899999999939998999979998--------89------9972-789-977899996---9
Q ss_pred CCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEE
Q ss_conf 83099997289639999994699612565212110011167576288944745531796012641999928663199875
Q 000603 651 NQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQI 730 (1398)
Q Consensus 651 ~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i 730 (1398)
++.+|++++.||.|++|+.+.. . +
T Consensus 478 d~~~las~~~d~~i~iw~~~~~-~--------------------------------~----------------------- 501 (577)
T 2ymu_A 478 DGQTIASASDDKTVKLWNRNGQ-L--------------------------------L----------------------- 501 (577)
T ss_dssp TSCEEEEEETTSEEEEEETTSC-E--------------------------------E-----------------------
T ss_pred CCCEEEEEECCCEEEEECCCCC-E--------------------------------E-----------------------
T ss_conf 9999999919897999939997-8--------------------------------9-----------------------
Q ss_pred ECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCC
Q ss_conf 21685542200027889984199999566899999751157677666443347875306587863155324533222378
Q 000603 731 PCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSAL 810 (1398)
Q Consensus 731 ~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~ 810 (1398)
. . ..+|...|++++|+|+
T Consensus 502 -------------------------------~--~----------------~~~h~~~v~~l~~s~d------------- 519 (577)
T 2ymu_A 502 -------------------------------Q--T----------------LTGHSSSVRGVAFSPD------------- 519 (577)
T ss_dssp -------------------------------E--E----------------EECCSSCEEEEEECTT-------------
T ss_pred -------------------------------E--E----------------EECCCCCEEEEEECCC-------------
T ss_conf -------------------------------9--9----------------8679999899999189-------------
Q ss_pred CCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEE
Q ss_conf 99729999226871999976089964210012243457542124666410001233335786432234553346899789
Q 000603 811 NKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFL 890 (1398)
Q Consensus 811 ~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l 890 (1398)
+++||||++|++|+||.+. ...+..+.+|. ..|++++|. .|+.+
T Consensus 520 --g~~l~s~~~dg~v~lwd~~-----~~~~~~~~~h~--~~v~~~~fs---------------------------~dg~~ 563 (577)
T 2ymu_A 520 --GQTIASASDDKTVKLWNRN-----GQLLQTLTGHS--SSVWGVAFS---------------------------PDGQT 563 (577)
T ss_dssp --SSCEEEEETTSEEEEECTT-----SCEEEEEECCS--SCEEEEEEC---------------------------TTSSC
T ss_pred --CCEEEEEECCCEEEEEECC-----CCEEEEECCCC--CCEEEEEEC---------------------------CCCCE
T ss_conf --9999999896999999699-----97898971888--887899996---------------------------89999
Q ss_pred EEEECCCCEEEEEE
Q ss_conf 99953442489999
Q 000603 891 LISVGAKRVLTSWL 904 (1398)
Q Consensus 891 l~S~g~d~~i~iW~ 904 (1398)
|+|+|.|+.|++|+
T Consensus 564 l~s~~~D~~i~~Wd 577 (577)
T 2ymu_A 564 IASASSDKTVKLWN 577 (577)
T ss_dssp EEEEETTSCEEEEC
T ss_pred EEEEECCCEEEEEC
T ss_conf 99990899999969
No 2
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=478.76 Aligned_cols=589 Identities=13% Similarity=0.118 Sum_probs=438.6
Q ss_pred EEEEECCCCEECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCC
Q ss_conf 99995786700363499999721898899889999808919999889993887998660834899997103464589875
Q 000603 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVST 85 (1398)
Q Consensus 6 v~iWdl~~~~h~~~Vtaiafs~~pd~~~~g~lLaaG~dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~ 85 (1398)
.++|-.....+.+.+.+++|+ || |++|+++.++.|++|++.+++....+.+|.. .|.+++|+ |+|
T Consensus 7 ~~~~~~~~~~~~g~~~~~~~s--pd----g~~l~~~~~~~v~l~~~~~~~~~~~~~~h~~-~v~~~~~s-------pdg- 71 (611)
T 1nr0_A 7 TALFPSLPRTARGTAVVLGNT--PA----GDKIQYCNGTSVYTVPVGSLTDTEIYTEHSH-QTTVAKTS-------PSG- 71 (611)
T ss_dssp EEEECCCCCCCTTCCCCCEEC--TT----SSEEEEEETTEEEEEETTCSSCCEEECCCSS-CEEEEEEC-------TTS-
T ss_pred CCEECCCCCCCCCCEEEEEEC--CC----CCEEEECCCCEEEEECCCCCCCCEEECCCCC-CEEEEEEC-------CCC-
T ss_conf 627989997406823697667--99----9979967999799945787242737658998-65999999-------999-
Q ss_pred CCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECC----CEEE
Q ss_conf 2100999994-9969999914788999988886321111555314688768999998413899499999889----9099
Q 000603 86 RVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD----NSIR 160 (1398)
Q Consensus 86 ~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~D----g~I~ 160 (1398)
.+|++++ |++|+|||+.... ..+...+.+|.++|.+++|+| ++++|++++.+ +.|+
T Consensus 72 ---~~lasg~~d~~v~lWd~~~~~-------------~~~~~~~~~~~~~v~~v~fs~---dg~~l~~~~~~~~~~~~v~ 132 (611)
T 1nr0_A 72 ---YYCASGDVHGNVRIWDTTQTT-------------HILKTTIPVFSGPVKDISWDS---ESKRIAAVGEGRERFGHVF 132 (611)
T ss_dssp ---SEEEEEETTSEEEEEESSSTT-------------CCEEEEEECSSSCEEEEEECT---TSCEEEEEECCSSCSEEEE
T ss_pred ---CEEEEEECCCCEEEEECCCCC-------------CEEEEEECCCCCCEEEEEECC---CCCEEEEEECCCCCEEEEE
T ss_conf ---689999489978994898984-------------156676225578448999899---9997999989977366999
Q ss_pred EEECCCCEEEEEECCCCCCEEEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 9995799199998348863189998623798885-999997999099999246876666899998777898887620253
Q 000603 161 VWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKL 239 (1398)
Q Consensus 161 iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~-~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i 239 (1398)
+||. +.....+..+. ..+.+++| +|++. .+++|+.|+.|++|+..
T Consensus 133 ~wd~--~~~~~~l~gh~-~~v~~v~f---~p~~~~~l~s~s~D~~v~lwd~~---------------------------- 178 (611)
T 1nr0_A 133 LFDT--GTSNGNLTGQA-RAMNSVDF---KPSRPFRIISGSDDNTVAIFEGP---------------------------- 178 (611)
T ss_dssp ETTT--CCBCBCCCCCS-SCEEEEEE---CSSSSCEEEEEETTSCEEEEETT----------------------------
T ss_pred EEEC--CCCCCEECCCC-CCCEEEEE---CCCCCEEEEEEECCCEEEEEECC----------------------------
T ss_conf 9638--99763254788-98369998---89998299999289809999799----------------------------
Q ss_pred CCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEE--EEEECCCCCEEEEEEC
Q ss_conf 13566405799992766888999994899999999789909999957894138887037630--4874088447999991
Q 000603 240 QDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGS--SVLYGHNARVWDCCLT 317 (1398)
Q Consensus 240 ~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~--~~~~gh~~~V~~i~~s 317 (1398)
..+....+.+|...|.+++|+|++++|++++.|++|++||+.+++. ...+.. ....+|...|++++|+
T Consensus 179 -----~~~~~~~l~~H~~~V~~v~fspdg~~las~s~D~~i~lwd~~~g~~-----~~~~~~~~~~~~~h~~~V~~v~~s 248 (611)
T 1nr0_A 179 -----PFKFKSTFGEHTKFVHSVRYNPDGSLFASTGGDGTIVLYNGVDGTK-----TGVFEDDSLKNVAHSGSVFGLTWS 248 (611)
T ss_dssp -----TBEEEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEEETTTCCE-----EEECBCTTSSSCSSSSCEEEEEEC
T ss_pred -----CCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCE-----EEEECCCCCCCCCCCCCEEEEEEC
T ss_conf -----9757665200257169999979999899998999199988999828-----665136643235667878999997
Q ss_pred --CCEEEEEECCCCEEEECC-CCCEEEEEECCCC--CCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCCCCCCCCCCC
Q ss_conf --998999958992999938-9946899920248--65799999489999999982893999995988755324787641
Q 000603 318 --DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIG--RGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAK 392 (1398)
Q Consensus 318 --~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~--~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v 392 (1398)
+.+|++++.|+++++||+ +++.+.++..+.. ..+..+.| ++..+++++.|+.+++|+.....
T Consensus 249 pdg~~l~s~s~D~~v~lWd~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~l~s~s~d~~i~~~~~~~~~----------- 315 (611)
T 1nr0_A 249 PDGTKIASASADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIW--TKQALVSISANGFINFVNPELGS----------- 315 (611)
T ss_dssp TTSSEEEEEETTSEEEEEETTTTEEEEEEECCSSGGGCEEEEEE--CSSCEEEEETTCCEEEEETTTTE-----------
T ss_pred CCCCEEEEEECCCEEEEEECCCCCEEEEECCCCCCCCEEEEEEE--CCCEEEEEECCCCEEEEECCCCC-----------
T ss_conf 99999999908980999968887013440478876640689997--38879999589968999688997-----------
Q ss_pred CCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEE
Q ss_conf 01687307996527975423411678974799999119909999-90893899995038885048978524896399985
Q 000603 393 EFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMD 471 (1398)
Q Consensus 393 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~-t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~ 471 (1398)
....+.+|...|.+++|+|++.++++ +.++.+..| +.............+...+.++.
T Consensus 316 ------------------~~~~~~gh~~~v~~l~~spdg~~l~s~s~D~~v~~W---d~~~~~~~~~~~~~h~~~v~~~~ 374 (611)
T 1nr0_A 316 ------------------IDQVRYGHNKAITALSSSADGKTLFSADAEGHINSW---DISTGISNRVFPDVHATMITGIK 374 (611)
T ss_dssp ------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEEEE---ETTTCCEEECSSCSCSSCEEEEE
T ss_pred ------------------CCEEECCCCCCEEEEEEECCCCEEEEEECCCCEEEE---ECCCCCEEEECCCCCCCEEEEEE
T ss_conf ------------------446983788888999991899989999589849999---78879256321667765078999
Q ss_pred CCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEE
Q ss_conf 06899988689996999992899799999717854651135666404753416689997519992999981899399995
Q 000603 472 LLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQ 551 (1398)
Q Consensus 472 ~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWd 551 (1398)
+. + +..+++++.|+.+++|++..+............. .... .+++++++..++++ .++.+++|+
T Consensus 375 ~s--------~-~~~l~s~s~d~~v~~w~~~~~~~~~~~~~~~~~~----~~~~--~~~~s~dg~~~~~~-~~~~v~~~~ 438 (611)
T 1nr0_A 375 TT--------S-KGDLFTVSWDDHLKVVPAGGSGVDSSKAVANKLS----SQPL--GLAVSADGDIAVAA-CYKHIAIYS 438 (611)
T ss_dssp EC--------T-TSCEEEEETTTEEEEECSSSSSSCTTSCCEEECS----SCEE--EEEECTTSSCEEEE-ESSEEEEEE
T ss_pred EC--------C-CCCEEEEECCCCEEEEECCCCCCCCCCEEEEECC----CCCC--EEEEECCCCEEEEE-ECCEEEEEE
T ss_conf 87--------8-9969999848966895468854356521200148----9970--79980799699999-676399984
Q ss_pred CCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEE
Q ss_conf 68999864323676420211111113469818999953299889996178819999879743356454430110563000
Q 000603 552 LCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYF 631 (1398)
Q Consensus 552 i~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~ 631 (1398)
.. . ...+ .|...+.+++|+||+++||+|+.|++|++|++.... +.....
T Consensus 439 ~~----------------~-~~~~--~~~~~v~~va~spdg~~lasgs~D~~v~lwd~~~~~-----------~~~~~~- 487 (611)
T 1nr0_A 439 HG----------------K-LTEV--PISYNSSCVALSNDKQFVAVGGQDSKVHVYKLSGAS-----------VSEVKT- 487 (611)
T ss_dssp TT----------------E-EEEE--ECSSCEEEEEECTTSCEEEEEETTSEEEEEEEETTE-----------EEEEEE-
T ss_pred CC----------------C-EEEE--ECCCCCEEEEEECCCCEEEEECCCCEEEEEECCCCC-----------EEEEEC-
T ss_conf 89----------------4-3464--068895499992899899996899739999945992-----------224101-
Q ss_pred CCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEE
Q ss_conf 13457644899999740898309999728963999999469961256521211001116757628894474553179601
Q 000603 632 KGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGF 711 (1398)
Q Consensus 632 ~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~v~Gf 711 (1398)
..|. ..|++|+|+ +++.+|++++.|+.+++|++...... ..
T Consensus 488 -~~h~-~~v~~v~fs---pdg~~las~s~d~~v~~w~~~~~~~~--------~~-------------------------- 528 (611)
T 1nr0_A 488 -IVHP-AEITSVAFS---NNGAFLVATDQSRKVIPYSVANNFEL--------AH-------------------------- 528 (611)
T ss_dssp -EECS-SCEEEEEEC---TTSSEEEEEETTSCEEEEEGGGTTEE--------SC--------------------------
T ss_pred -CCCC-CCEEEEEEC---CCCCEEEEECCCCCEEEEECCCCCCE--------EE--------------------------
T ss_conf -5778-860799998---99998999948998999885778722--------32--------------------------
Q ss_pred CCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEE
Q ss_conf 26419999286631998752168554220002788998419999956689999975115767766644334787530658
Q 000603 712 ASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHT 791 (1398)
Q Consensus 712 ~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~s 791 (1398)
....++|...|++
T Consensus 529 -------------------------------------------------------------------~~~~~~H~~~V~~ 541 (611)
T 1nr0_A 529 -------------------------------------------------------------------TNSWTFHTAKVAC 541 (611)
T ss_dssp -------------------------------------------------------------------CCCCCCCSSCEEE
T ss_pred -------------------------------------------------------------------EEEEEECCCCEEE
T ss_conf -------------------------------------------------------------------1026404664258
Q ss_pred EEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCC-CCCCCEEEEEEEEEECCCCCCCCC
Q ss_conf 7863155324533222378997299992268719999760899642100122434-575421246664100012333357
Q 000603 792 LCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEH-VGGSAVRSICFVSEINQISAVVDN 870 (1398)
Q Consensus 792 v~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l~~H-~~gsaV~~i~f~~~~~~~~~~~~~ 870 (1398)
|+|+|+ +++||||+.|++|+||.+..... ....++.+| . ..|++++|.+
T Consensus 542 v~fspd---------------g~~lasgs~D~~v~lW~~~~~~~--~~~~~~~~h~~--~~v~~v~fs~----------- 591 (611)
T 1nr0_A 542 VSWSPD---------------NVRLATGSLDNSVIVWNMNKPSD--HPIIIKGAHAM--SSVNSVIWLN----------- 591 (611)
T ss_dssp EEECTT---------------SSEEEEEETTSCEEEEETTCTTS--CCEEETTSSTT--SCEEEEEEEE-----------
T ss_pred EEECCC---------------CCEEEEEECCCCEEEEECCCCCC--CCCHHHCCCCC--CCEEEEEECC-----------
T ss_conf 998998---------------99799997997299997887555--63264446765--6711899858-----------
Q ss_pred CCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEE
Q ss_conf 864322345533468997899995344248999997
Q 000603 871 VSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLR 906 (1398)
Q Consensus 871 ~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~iW~~~ 906 (1398)
++. |+|+|.|+.|++|++.
T Consensus 592 ----------------d~~-l~s~~~D~~i~lW~~~ 610 (611)
T 1nr0_A 592 ----------------ETT-IVSAGQDSNIKFWNVP 610 (611)
T ss_dssp ----------------TTE-EEEEETTSCEEEEECC
T ss_pred ----------------CCE-EEEECCCCCEEEEECC
T ss_conf ----------------997-9995288778998444
No 3
>1nr0_A Actin interacting protein 1; beta propeller, WD40 repeat, ADF, cofilin, structural genomics, PSI, protein structure initiative; 1.70A {Caenorhabditis elegans} SCOP: b.69.4.1 b.69.4.1 PDB: 1pev_A
Probab=1.00 E-value=1 Score=471.49 Aligned_cols=505 Identities=15% Similarity=0.143 Sum_probs=380.5
Q ss_pred CCCEEEEECCCCE-------ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCC--EEEEEEEEEECCCEEEEE
Q ss_conf 9749999578670-------036349999972189889988999980-891999988999--388799866083489999
Q 000603 3 KKDLSEWRLDVGQ-------YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAG--TLIRPFQVFHGIRLHGIS 72 (1398)
Q Consensus 3 D~tv~iWdl~~~~-------h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg--~~i~~~~~~~~~~V~~i~ 72 (1398)
++++++|++..+. |.++|++++|+ |+ +++||+|+ |++|+|||+.++ .....+..|.+ .|.+++
T Consensus 38 ~~~v~l~~~~~~~~~~~~~~h~~~v~~~~~s--pd----g~~lasg~~d~~v~lWd~~~~~~~~~~~~~~~~~-~v~~v~ 110 (611)
T 1nr0_A 38 GTSVYTVPVGSLTDTEIYTEHSHQTTVAKTS--PS----GYYCASGDVHGNVRIWDTTQTTHILKTTIPVFSG-PVKDIS 110 (611)
T ss_dssp TTEEEEEETTCSSCCEEECCCSSCEEEEEEC--TT----SSEEEEEETTSEEEEEESSSTTCCEEEEEECSSS-CEEEEE
T ss_pred CCEEEEECCCCCCCCEEECCCCCCEEEEEEC--CC----CCEEEEEECCCCEEEEECCCCCCEEEEEECCCCC-CEEEEE
T ss_conf 9979994578724273765899865999999--99----9689999489978994898984156676225578-448999
Q ss_pred EECCCCCCCCCCCCCEEEEEEECC-----CEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCC
Q ss_conf 710346458987521009999949-----969999914788999988886321111555314688768999998413899
Q 000603 73 CNFINCTEGSVSTRVTFEVALFGE-----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGN 147 (1398)
Q Consensus 73 fs~~~~~~~pdg~~~~~~la~~gd-----~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg 147 (1398)
|+ |++ ..+++.++ +.|++|+. .+....+.+|...|++++|+| ++
T Consensus 111 fs-------~dg----~~l~~~~~~~~~~~~v~~wd~-----------------~~~~~~l~gh~~~v~~v~f~p---~~ 159 (611)
T 1nr0_A 111 WD-------SES----KRIAAVGEGRERFGHVFLFDT-----------------GTSNGNLTGQARAMNSVDFKP---SR 159 (611)
T ss_dssp EC-------TTS----CEEEEEECCSSCSEEEEETTT-----------------CCBCBCCCCCSSCEEEEEECS---SS
T ss_pred EC-------CCC----CEEEEEECCCCCEEEEEEEEC-----------------CCCCCEECCCCCCCEEEEECC---CC
T ss_conf 89-------999----979999899773669999638-----------------997632547889836999889---99
Q ss_pred C-EEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 4-999998899099999579919999834886318999862379888599999799909999924687666689999877
Q 000603 148 R-SLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNH 226 (1398)
Q Consensus 148 ~-~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s 226 (1398)
. .|++++.|++|++||..+++....+..|.. .+.+++| +|++.+|++++.|+.|++|+..
T Consensus 160 ~~~l~s~s~D~~v~lwd~~~~~~~~~l~~H~~-~V~~v~f---spdg~~las~s~D~~i~lwd~~--------------- 220 (611)
T 1nr0_A 160 PFRIISGSDDNTVAIFEGPPFKFKSTFGEHTK-FVHSVRY---NPDGSLFASTGGDGTIVLYNGV--------------- 220 (611)
T ss_dssp SCEEEEEETTSCEEEEETTTBEEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT---------------
T ss_pred CEEEEEEECCCEEEEEECCCCEEEEEECCCCC-CEEEEEE---CCCCCEEEEEECCCCEEEEECC---------------
T ss_conf 82999992898099997999757665200257-1699999---7999989999899919998899---------------
Q ss_pred CCCCCCCCCEEEECCCCCCEEEEEEEE-------CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEE
Q ss_conf 789888762025313566405799992-------7668889999948999999997899099999578941388870376
Q 000603 227 AHGSSSDFKCFKLQDQQHTAVNLFRLV-------GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEV 299 (1398)
Q Consensus 227 ~~~~~~~~~~i~i~~~~~~~~~i~~l~-------gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i 299 (1398)
.++.+..+. +|.+.|.+++|+|++++|++++.|++|++||+.+++. ...+
T Consensus 221 ------------------~g~~~~~~~~~~~~~~~h~~~V~~v~~spdg~~l~s~s~D~~v~lWd~~~~~~-----~~~~ 277 (611)
T 1nr0_A 221 ------------------DGTKTGVFEDDSLKNVAHSGSVFGLTWSPDGTKIASASADKTIKIWNVATLKV-----EKTI 277 (611)
T ss_dssp ------------------TCCEEEECBCTTSSSCSSSSCEEEEEECTTSSEEEEEETTSEEEEEETTTTEE-----EEEE
T ss_pred ------------------CCCEEEEECCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----EEEE
T ss_conf ------------------98286651366432356678789999979999999990898099996888701-----3440
Q ss_pred EEEEEECCCCCEEEEEECCCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf 304874088447999991998999958992999938-9946899920248657999994899999999828939999959
Q 000603 300 GSSVLYGHNARVWDCCLTDSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 300 ~~~~~~gh~~~V~~i~~s~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
. ....+...+..+.|.+..+++++.|+.+++|+. .++....+.+|.. .|++++|+|++++|++++.|+.|++|++.
T Consensus 278 ~--~~~~~~~~~~~~~~~~~~l~s~s~d~~i~~~~~~~~~~~~~~~gh~~-~v~~l~~spdg~~l~s~s~D~~v~~Wd~~ 354 (611)
T 1nr0_A 278 P--VGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSIDQVRYGHNK-AITALSSSADGKTLFSADAEGHINSWDIS 354 (611)
T ss_dssp E--CCSSGGGCEEEEEECSSCEEEEETTCCEEEEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEETT
T ss_pred C--CCCCCCCEEEEEEECCCEEEEEECCCCEEEEECCCCCCCEEECCCCC-CEEEEEEECCCCEEEEEECCCCEEEEECC
T ss_conf 4--78876640689997388799995899689996889974469837888-88999991899989999589849999788
Q ss_pred CCC-CCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEE
Q ss_conf 887-5532478764101687307996527975423411678974799999119909999908938999950388850489
Q 000603 379 AFL-PGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNK 457 (1398)
Q Consensus 379 ~~~-l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~ 457 (1398)
... ...+ ...|...+.+++|++++.++.++.++.+..|++.......-..
T Consensus 355 ~~~~~~~~-----------------------------~~~h~~~v~~~~~s~~~~l~s~s~d~~v~~w~~~~~~~~~~~~ 405 (611)
T 1nr0_A 355 TGISNRVF-----------------------------PDVHATMITGIKTTSKGDLFTVSWDDHLKVVPAGGSGVDSSKA 405 (611)
T ss_dssp TCCEEECS-----------------------------SCSCSSCEEEEEECTTSCEEEEETTTEEEEECSSSSSSCTTSC
T ss_pred CCCEEEEC-----------------------------CCCCCCEEEEEEECCCCCEEEEECCCCEEEEECCCCCCCCCCE
T ss_conf 79256321-----------------------------6677650789998789969999848966895468854356521
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCE
Q ss_conf 78524896399985068999886899969999928997999997178546511356664047534166899975199929
Q 000603 458 ILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRF 537 (1398)
Q Consensus 458 i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~ 537 (1398)
.. .........+.+ .+++..++++. ++.+++|+ .+. .. .. . ....+. .++++|++++
T Consensus 406 ~~-~~~~~~~~~~~~--------s~dg~~~~~~~-~~~v~~~~--~~~-~~----~~--~--~~~~v~--~va~spdg~~ 462 (611)
T 1nr0_A 406 VA-NKLSSQPLGLAV--------SADGDIAVAAC-YKHIAIYS--HGK-LT----EV--P--ISYNSS--CVALSNDKQF 462 (611)
T ss_dssp CE-EECSSCEEEEEE--------CTTSSCEEEEE-SSEEEEEE--TTE-EE----EE--E--CSSCEE--EEEECTTSCE
T ss_pred EE-EECCCCCCEEEE--------ECCCCEEEEEE-CCEEEEEE--CCC-EE----EE--E--CCCCCE--EEEEECCCCE
T ss_conf 20-014899707998--------07996999996-76399984--894-34----64--0--688954--9999289989
Q ss_pred EEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCC
Q ss_conf 99981899399995689998643236764202111111134698189999532998899961788199998797433564
Q 000603 538 IFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDK 617 (1398)
Q Consensus 538 L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~ 617 (1398)
|++++.|+.|++|++.... +..... ..|...|++++|+||+++|++|+.|++|++|++.+..
T Consensus 463 lasgs~D~~v~lwd~~~~~------------~~~~~~--~~h~~~v~~v~fspdg~~las~s~d~~v~~w~~~~~~---- 524 (611)
T 1nr0_A 463 VAVGGQDSKVHVYKLSGAS------------VSEVKT--IVHPAEITSVAFSNNGAFLVATDQSRKVIPYSVANNF---- 524 (611)
T ss_dssp EEEEETTSEEEEEEEETTE------------EEEEEE--EECSSCEEEEEECTTSSEEEEEETTSCEEEEEGGGTT----
T ss_pred EEEECCCCEEEEEECCCCC------------EEEEEC--CCCCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC----
T ss_conf 9996899739999945992------------224101--5778860799998999989999489989998857787----
Q ss_pred CCCCEEEECCCCE-ECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECC
Q ss_conf 5443011056300-013457644899999740898309999728963999999469
Q 000603 618 SVALHVEVSPLNY-FKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKD 672 (1398)
Q Consensus 618 ~~~~~~~l~p~~~-~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~ 672 (1398)
. + ... ..+.|. ..|++++|+ +++.+|+|++.||.|++|+++.+
T Consensus 525 ---~---~--~~~~~~~~H~-~~V~~v~fs---pdg~~lasgs~D~~v~lW~~~~~ 568 (611)
T 1nr0_A 525 ---E---L--AHTNSWTFHT-AKVACVSWS---PDNVRLATGSLDNSVIVWNMNKP 568 (611)
T ss_dssp ---E---E--SCCCCCCCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTCT
T ss_pred ---C---E--EEEEEEEECC-CCEEEEEEC---CCCCEEEEEECCCCEEEEECCCC
T ss_conf ---2---2--3210264046-642589989---98997999979972999978875
No 4
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=465.90 Aligned_cols=627 Identities=14% Similarity=0.200 Sum_probs=419.6
Q ss_pred ECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEE
Q ss_conf 036349999972189889988999980-8919999889993887998660834899997103464589875210099999
Q 000603 16 YLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALF 94 (1398)
Q Consensus 16 h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~ 94 (1398)
|.+.|++++|+ |+ ++++++|+ ++.|+|||+.+++.+..+.+|.+ .|.+++|+ |++ .+++++
T Consensus 614 h~~~v~~~~~s--~~----~~~l~s~~~d~~i~vw~~~~~~~~~~~~~h~~-~v~~~~~s-------~~~----~~l~s~ 675 (1249)
T 3sfz_A 614 HTDAVYHACFS--QD----GQRIASCGADKTLQVFKAETGEKLLDIKAHED-EVLCCAFS-------SDD----SYIATC 675 (1249)
T ss_dssp CSSCEEEEEEC--TT----SSEEEEEETTSCEEEEETTTCCEEEEECCCSS-CEEEEEEC-------TTS----SEEEEE
T ss_pred CCCCEEEEEEC--CC----CCEEEEEECCCEEEEEECCCCCEEEEECCCCC-CEEEEEEE-------CCC----CEEEEE
T ss_conf 66648999987--99----99899994889499999899978887606777-78999992-------699----989998
Q ss_pred C-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEE
Q ss_conf 4-996999991478899998888632111155531468876899999841389949999988990999995799199998
Q 000603 95 G-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEV 173 (1398)
Q Consensus 95 g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l 173 (1398)
+ |+.|++||+.+ ++.+..+.+|...|.+++|+|. .++.++++++.|+.|++||+.++.....+
T Consensus 676 ~~d~~v~vwd~~~---------------~~~~~~~~~~~~~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~~~~~~~~~ 739 (1249)
T 3sfz_A 676 SADKKVKIWDSAT---------------GKLVHTYDEHSEQVNCCHFTNK-SNHLLLATGSNDFFLKLWDLNQKECRNTM 739 (1249)
T ss_dssp ETTSEEEEEETTT---------------CCEEEEEECCSSCEEEEEECSS-SSCCEEEEEETTSCEEEEETTSSSEEEEE
T ss_pred ECCCEEEEEECCC---------------CCEEEEECCCCCCEEEEEEECC-CCCEEEEEEECCCEEEEEECCCCCHHHEE
T ss_conf 1899599987799---------------9368999589973799998408-99659999808970999989996342201
Q ss_pred CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEE
Q ss_conf 34886318999862379888599999799909999924687666689999877789888762025313566405799992
Q 000603 174 HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLV 253 (1398)
Q Consensus 174 ~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~ 253 (1398)
..+.. .+.++.+ ++++..+++++.||.|++|++..+...... ..... .........
T Consensus 740 ~~h~~-~v~~~~~---sp~~~~l~s~s~dg~v~vwd~~~~~~~~~~------------------~~~~~--~~~~~~~~~ 795 (1249)
T 3sfz_A 740 FGHTN-SVNHCRF---SPDDELLASCSADGTLRLWDVRSANERKSI------------------NVKRF--FLSSEDPPE 795 (1249)
T ss_dssp CCCSS-CEEEEEE---CSSTTEEEEEESSSEEEEEEGGGTEEEEEE------------------ECCCC--C--------
T ss_pred CCCCC-CEEEEEE---ECCCCEEEEEECCCEEEEEECCCCCCCCEE------------------CCCCC--CCCCCCCCC
T ss_conf 27779-7889999---259998999978985999968888655302------------------02321--024677644
Q ss_pred CCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEE
Q ss_conf 7668889999948999999997899099999578941388870376304874088447999991--99899995899299
Q 000603 254 GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCR 331 (1398)
Q Consensus 254 gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~ 331 (1398)
.+...+.+++|+|++..+++++ ++.+.+|++.++.. .. ....+|...+.+++|+ +.++++++.|+.++
T Consensus 796 ~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~-----~~----~~~~~~~~~v~~~~~sp~~~~l~~~~~dg~v~ 865 (1249)
T 3sfz_A 796 DVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGL-----LA----EIHTGHHSTIQYCDFSPYDHLAVIALSQYCVE 865 (1249)
T ss_dssp CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCE-----EE----EEECSSSSCCCEEEECSSTTEEEEECSSSCEE
T ss_pred CCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCC-----EE----EECCCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 5650179999978998899975-89599999568972-----35----77478777607999827888899994798699
Q ss_pred EECC-CCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCCEEEEECCCCCCC-CCCCCCCCCCCCCCCCEEEEEECCCC
Q ss_conf 9938-994689992024865799999489999999982893999995988755-32478764101687307996527975
Q 000603 332 VWGS-DGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQAFLPG-SLESHPEAKEFNGRTEIFSIKIPNFS 409 (1398)
Q Consensus 332 iWd~-~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~~~~l~-~l~~~~~~v~~~~~~~~~~~~~~~~~ 409 (1398)
+|++ ++..+..+.+|.. .|++++|+|++.++++++.||.+++|++...... ....
T Consensus 866 vwd~~~~~~~~~~~~h~~-~v~~v~~spdg~~l~s~s~dg~v~vw~~~~~~~~~~~~~---------------------- 922 (1249)
T 3sfz_A 866 LWNIDSRLKVADCRGHLS-WVHGVMFSPDGSSFLTASDDQTIRVWETKKVCKNSAIVL---------------------- 922 (1249)
T ss_dssp EEETTTTEEEEEECCCSS-CEEEEEECTTSSEEEEEETTSCEEEEEHHHHHSCCSSSE----------------------
T ss_pred EEECCCCCEEEECCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEECC----------------------
T ss_conf 998678956532278766-568999989999899995897289887466520102113----------------------
Q ss_pred CCEEECCCCCCCEEEEEEECCCEEEEE-ECCCCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEE
Q ss_conf 423411678974799999119909999-9089389999503888504897852489639998506899988689996999
Q 000603 410 EQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVA 488 (1398)
Q Consensus 410 ~~~~~~~~~~~~V~~iafs~dg~llv~-t~~g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la 488 (1398)
.......+.++...++. .....+..+ ....... .......+.++.+ .+++.+++
T Consensus 923 ----------~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~----~~~~~~~i~~~~~--------sp~g~~l~ 977 (1249)
T 3sfz_A 923 ----------KQEIDVVFQENETMVLAVDNIRGLQLI---AGKTGQI----DYLPEAQVSCCCL--------SPHLEYVA 977 (1249)
T ss_dssp ----------EEEEEEEEETTEEEEEEEESSSSEEEE---EESSCCE----EEECCSCEEEEEE--------CTTSSEEE
T ss_pred ----------CCEEEEEECCCCCEEEEECCCCCEEEE---ECCCCEE----EECCCCCEEEEEE--------CCCCCEEE
T ss_conf ----------310368975998689981377624898---4476508----9725672789999--------58997799
Q ss_pred EEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCE
Q ss_conf 99289979999971785465113566640475341668999751999299998189939999568999864323676420
Q 000603 489 LGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNN 568 (1398)
Q Consensus 489 ~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~ 568 (1398)
+|+.+|.|++|++.++..... ...+...+.. ++++++++++++++.|+.+++|++..+.
T Consensus 978 ~g~~~g~i~i~d~~~~~~~~~-------~~~h~~~v~~--l~~s~dg~~l~s~~~dg~i~vwd~~~~~------------ 1036 (1249)
T 3sfz_A 978 FGDEDGAIKIIELPNNRVFSS-------GVGHKKAVRH--IQFTADGKTLISSSEDSVIQVWNWQTGD------------ 1036 (1249)
T ss_dssp EEETTSCCEEEETTTTSCEEE-------CCCCSSCCCC--EEECSSSSCEEEECSSSBEEEEETTTTE------------
T ss_pred EECCCCCEEEEECCCCCEEEE-------CCCCCCCEEE--EEECCCCCEEEEECCCCEEEEEECCCCC------------
T ss_conf 986999889997578723443-------0367771689--9998999989998699879999879996------------
Q ss_pred EEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEE
Q ss_conf 21111111346981899995329988999617881999987974335645443011056300013457644899999740
Q 000603 569 VFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKL 648 (1398)
Q Consensus 569 l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~ 648 (1398)
.. ....|...|+++++++++. +++++.||+|++|++.++. +...+. .|. ..|+++.|+
T Consensus 1037 --~~--~~~~~~~~v~~~~~~~~~~-l~~~~~dg~v~vwd~~~~~-------------~~~~~~-~~~-~~v~~~~~s-- 1094 (1249)
T 3sfz_A 1037 --YV--FLQAHQETVKDFRLLQDSR-LLSWSFDGTVKVWNVITGR-------------IERDFT-CHQ-GTVLSCAIS-- 1094 (1249)
T ss_dssp --EE--CCBCCSSCEEEEEECSSSE-EEEEESSSEEEEEETTTTC-------------CCEEEE-CCS-SCCCCEEEC--
T ss_pred --EE--EEECCCCCEEEEEECCCCC-EEEEECCCCEEEEECCCCC-------------EEEEEC-CCC-CCEEEEEEC--
T ss_conf --68--9852787389999908995-8999788968998889886-------------558874-668-848999998--
Q ss_pred CCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEE
Q ss_conf 89830999972896399999946996125652121100111675762889447455317960126419999286631998
Q 000603 649 RSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVV 728 (1398)
Q Consensus 649 ~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~ 728 (1398)
+++.+|++++.||.+++|++..+.....+.. + ...+..+.+++ ++.+++.|..++.+.+|+..+...+.
T Consensus 1095 -~d~~~l~s~s~d~~v~iwd~~~~~~~~~l~~----h-~~~v~~~~~s~-----dg~~lat~~~dg~i~vwd~~~~~~~~ 1163 (1249)
T 3sfz_A 1095 -SDATKFSSTSADKTAKIWSFDLLSPLHELKG----H-NGCVRCSAFSL-----DGILLATGDDNGEIRIWNVSDGQLLH 1163 (1249)
T ss_dssp -SSSSSCEEECCSSCCCEECSSSSSCSBCCCC----C-SSCEEEEEECS-----SSSEEEEEETTSCCCEEESSSSCCCC
T ss_pred -CCCCEEEEECCCCCEEEEECCCCCEEEEECC----C-CCCEEEEEECC-----CCCEEEEEECCCEEEEEECCCCCEEE
T ss_conf -9999899984999489987898500125506----8-77679999979-----99989998289979999889994578
Q ss_pred EEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCC
Q ss_conf 75216855422000278899841999995668999997511576776664433478753065878631553245332223
Q 000603 729 QIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKS 808 (1398)
Q Consensus 729 ~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~ 808 (1398)
... ++ ........|...|++++|+|+
T Consensus 1164 ~~~------~~-------------------------------------~~~~~~~~~~~~v~~l~fs~d----------- 1189 (1249)
T 3sfz_A 1164 SCA------PI-------------------------------------SVEEGTATHGGWVTDVCFSPD----------- 1189 (1249)
T ss_dssp CCC------CC-------------------------------------C-------CCSCCCEEEECTT-----------
T ss_pred EEC------CC-------------------------------------CCCCCCCCCCCEEEEEEECCC-----------
T ss_conf 851------44-------------------------------------444210256742899999789-----------
Q ss_pred CCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78997299992268719999760899642100122434575421246664100012333357864322345533468997
Q 000603 809 ALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENP 888 (1398)
Q Consensus 809 ~~~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~ 888 (1398)
+.++++++ ++|++|.+..+ .....+..|. ..|++++|. .++
T Consensus 1190 ----g~~l~s~~--g~v~vwd~~~g----~~~~~~~~~~--~~i~~~~~s---------------------------~dg 1230 (1249)
T 3sfz_A 1190 ----SKTLVSAG--GYLKWWNVATG----DSSQTFYTNG--TNLKKIHVS---------------------------PDF 1230 (1249)
T ss_dssp ----SSCEEEES--SSEEEBCSSSC----BCCCCCCCSS--CCCCCCEEC---------------------------SSS
T ss_pred ----CCEEEECC--CEEEEEECCCC----CEEEEEECCC--CCCCEEEEC---------------------------CCC
T ss_conf ----99899779--85999898889----5004640047--753279997---------------------------898
Q ss_pred EEEEEECCCCEEEEEEE
Q ss_conf 89999534424899999
Q 000603 889 FLLISVGAKRVLTSWLL 905 (1398)
Q Consensus 889 ~ll~S~g~d~~i~iW~~ 905 (1398)
.+|++++.|+.|.+|++
T Consensus 1231 ~~l~~~~~dg~v~vw~l 1247 (1249)
T 3sfz_A 1231 RTYVTVDNLGILYILQV 1247 (1249)
T ss_dssp CCEEEECTTCCEEEECC
T ss_pred CEEEEECCCCEEEEEEE
T ss_conf 77999668817999764
No 5
>2ymu_A WD-40 repeat protein; unknown function, two domains; 1.79A {Nostoc punctiforme}
Probab=1.00 E-value=1 Score=457.55 Aligned_cols=526 Identities=18% Similarity=0.288 Sum_probs=366.9
Q ss_pred EEEEEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 38879986608348999971034645898752100999994-99699999147889999888863211115553146887
Q 000603 55 TLIRPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1398)
Q Consensus 55 ~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~ 133 (1398)
+..+.+++|.+ .|.+++|+ ||| .+|++++ |++|+|||.. .++++.+.+|.+
T Consensus 7 ~e~~~L~GH~~-~V~~~a~s-------pdg----~~las~~~d~~v~iWd~~----------------~~~~~~l~gh~~ 58 (577)
T 2ymu_A 7 KERNRLEAHSS-SVRGVAFS-------PDG----QTIASASDDKTVKLWNRN----------------GQLLQTLTGHSS 58 (577)
T ss_dssp CEEEEECCCSS-CEEEEEEC-------TTS----SCEEEEETTSEEEEECTT----------------SCEEEEEECCSS
T ss_pred EEEEEECCCCC-CEEEEEEC-------CCC----CEEEEEECCCEEEEEECC----------------CCEEEEEECCCC
T ss_conf 89439878998-57999998-------998----999999389989999799----------------978999968989
Q ss_pred CEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCC
Q ss_conf 68999998413899499999889909999957991999983488631899986237988859999979990999992468
Q 000603 134 WVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWE 213 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~ 213 (1398)
.|++++|+| ++++|++++.|++|++||+ +++.+..+..+.. .+.+++| +|++.++++++.|+.+++|+..
T Consensus 59 ~V~~l~fsp---dg~~las~~~d~~i~vWd~-~~~~~~~~~~~~~-~v~~~~~---s~d~~~l~~~~~d~~~~~~~~~-- 128 (577)
T 2ymu_A 59 SVWGVAFSP---DGQTIASASDDKTVKLWNR-NGQLLQTLTGHSS-SVRGVAF---SPDGQTIASASDDKTVKLWNRN-- 128 (577)
T ss_dssp CEEEEEECT---TSSEEEEEETTSCEEEEET-TSCEEEEECCCSS-CEEEEEE---CTTSSEEEEEETTSCEEEEETT--
T ss_pred CEEEEEECC---CCCEEEEEECCCEEEEEEC-CCCEEEEEECCCC-CEEEEEE---CCCCCEEEEECCCCCEEECCCC--
T ss_conf 989999989---9999999969897999989-9978999978999-8899999---8999989998079833520235--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCC
Q ss_conf 76666899998777898887620253135664057999927668889999948999999997899099999578941388
Q 000603 214 HVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDS 293 (1398)
Q Consensus 214 ~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~ 293 (1398)
........+|...+..+.++|++..+++++.++.+++|+......
T Consensus 129 --------------------------------~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 173 (577)
T 2ymu_A 129 --------------------------------GQLLQTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLL--- 173 (577)
T ss_dssp --------------------------------CCEEEEECCCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEE---
T ss_pred --------------------------------CCEEEECCCCCCCEEEEEEECCCCCCEECCCCCCEECCCCCEEEE---
T ss_conf --------------------------------520011047777435554203776320025553100000000000---
Q ss_pred CCCEEEEEEEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECCCCCEEEEEECCCCCCEEEEEECCCCCEEEEEECCCC
Q ss_conf 870376304874088447999991--998999958992999938994689992024865799999489999999982893
Q 000603 294 DSIEEVGSSVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGSDGKQLKMIKEHIGRGIWRCLYDSLSSLLVTAGFDSA 371 (1398)
Q Consensus 294 ~~~~~i~~~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~~g~~l~~l~~h~~~~V~si~~spdg~~lvtgg~Dg~ 371 (1398)
.....|...+.++.++ +.++++++.|+.+++|+.+++.+..+.+|.. .|.+++|+|++.+|++++.|+.
T Consensus 174 --------~~~~~~~~~v~~~~~~~~~~~l~~~~~d~~v~~w~~~~~~~~~~~~~~~-~v~~~~~s~dg~~l~~~~~d~~ 244 (577)
T 2ymu_A 174 --------QTLTGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS-SVRGVAFSPDGQTIASASDDKT 244 (577)
T ss_dssp --------EEEECCSSCEEEEEECTTSSCEEEEETTSEEEEECTTSCEEEEEECCSS-CEEEEEECTTSSCEEEEETTSC
T ss_pred --------EECCCCCCCEEEEEECCCCCEEEEECCCCEEEEEECCCCEEEEEECCCC-CEEEEEECCCCCEEEEEECCCE
T ss_conf --------0026877635665416997789998599989999499968999946889-8899999799999999918998
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEE-ECCCCEEEEEEECC
Q ss_conf 99999598875532478764101687307996527975423411678974799999119909999-90893899995038
Q 000603 372 IKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIA-TNHGYLYHTKLCDM 450 (1398)
Q Consensus 372 I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~-t~~g~i~~~~l~~~ 450 (1398)
|++|+.+++.+..+ ..|...|.+++|+|++..+++ +.++.+..| +.
T Consensus 245 i~~w~~~~~~~~~~------------------------------~~~~~~v~~v~~~~d~~~l~~~~~d~~i~~w---~~ 291 (577)
T 2ymu_A 245 VKLWNRNGQLLQTL------------------------------TGHSSSVNGVAFRPDGQTIASASDDKTVKLW---NR 291 (577)
T ss_dssp EEEECTTSCEEEEE------------------------------CCCSSCEEEEEECTTSSEEEEEETTSCEEEE---ET
T ss_pred EEEEECCCCEEEEE------------------------------ECCCCCEEEEEECCCCCEEEEEECCCEEEEE---EC
T ss_conf 99995999799998------------------------------0688987999996899999999599979999---48
Q ss_pred CCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEE
Q ss_conf 88504897852489639998506899988689996999992899799999717854651135666404753416689997
Q 000603 451 DSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWC 530 (1398)
Q Consensus 451 ~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 530 (1398)
.. .....+.++ ..++.++.+ .+++..+++++.|+.|++|+....... . ...+...+.. ++
T Consensus 292 ~~-~~~~~~~~h-~~~v~~~~~--------~~~~~~l~t~~~d~~i~~w~~~~~~~~-------~-~~~~~~~v~~--~~ 351 (577)
T 2ymu_A 292 NG-QLLQTLTGH-SSSVWGVAF--------SPDGQTIASASDDKTVKLWNRNGQHLQ-------T-LTGHSSSVWG--VA 351 (577)
T ss_dssp TS-CEEEEECCC-SSCEEEEEE--------CTTSSEEEEEETTSCEEEEETTSCEEE-------E-ECCCSSCEEE--EE
T ss_pred CC-CEEEEEECC-CCCEEEEEE--------CCCCCEEEEEECCCEEEEEECCCCEEE-------E-EECCCCCEEE--EE
T ss_conf 99-589997068-897699999--------999999999969995999969997257-------8-7478897799--99
Q ss_pred ECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECC
Q ss_conf 51999299998189939999568999864323676420211111113469818999953299889996178819999879
Q 000603 531 KSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLL 610 (1398)
Q Consensus 531 ~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~ 610 (1398)
+++++++|++++.|+.+++|+.... +... ...|...|++++|+|++++|++|+.|++|++|+..
T Consensus 352 ~s~~g~~l~~~~~dg~v~~~~~~~~---------------~~~~-~~~~~~~v~~~~~s~dg~~l~~~~~d~~v~~~~~~ 415 (577)
T 2ymu_A 352 FSPDGQTIASASDDKTVKLWNRNGQ---------------LLQT-LTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRN 415 (577)
T ss_dssp ECTTSSEEEEEETTSEEEEEETTCC---------------EEEE-EECCSSCEEEEEECTTSSCEEEEETTSEEEEECTT
T ss_pred ECCCCCEEEEEECCCEEEEECCCCC---------------EEEE-ECCCCCCEEEEEECCCCCEEEEEECCCEEEEEECC
T ss_conf 9899999999969998999908997---------------8998-52788974899998999999999499989999699
Q ss_pred CCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEE
Q ss_conf 74335645443011056300013457644899999740898309999728963999999469961256521211001116
Q 000603 611 RDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLI 690 (1398)
Q Consensus 611 ~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~i 690 (1398)
.. . ...+. .|. ..|+++.|+ +++.+|++++.||.+++|+.+.. .
T Consensus 416 ~~--------~------~~~~~-~~~-~~v~~~~~s---~d~~~l~~~~~d~~v~~w~~~~~-~---------------- 459 (577)
T 2ymu_A 416 GQ--------L------LQTLT-GHS-SSVWGVAFS---PDDQTIASASDDKTVKLWNRNGQ-L---------------- 459 (577)
T ss_dssp CC--------E------EEEEE-CCS-SCEEEEEEC---TTSSEEEEEETTSEEEEEETTSC-E----------------
T ss_pred CC--------E------EEEEC-CCC-CCEEEEEEC---CCCCEEEEECCCCEEEEEECCCC-E----------------
T ss_conf 97--------8------98962-889-975799998---99999999939998999979998-8----------------
Q ss_pred EEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECC
Q ss_conf 75762889447455317960126419999286631998752168554220002788998419999956689999975115
Q 000603 691 QSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISN 770 (1398)
Q Consensus 691 e~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~ 770 (1398)
+
T Consensus 460 ----------------~--------------------------------------------------------------- 460 (577)
T 2ymu_A 460 ----------------L--------------------------------------------------------------- 460 (577)
T ss_dssp ----------------E---------------------------------------------------------------
T ss_pred ----------------E---------------------------------------------------------------
T ss_conf ----------------9---------------------------------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCC
Q ss_conf 76776664433478753065878631553245332223789972999922687199997608996421001224345754
Q 000603 771 GERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGS 850 (1398)
Q Consensus 771 ~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l~~H~~gs 850 (1398)
.....|..+|++++|+|+ +++|+||++|++|+||... ......+.+|. .
T Consensus 461 ---------~~~~~~~~~v~~~~~spd---------------~~~las~~~d~~i~iw~~~-----~~~~~~~~~h~--~ 509 (577)
T 2ymu_A 461 ---------QTLTGHSSSVRGVAFSPD---------------GQTIASASDDKTVKLWNRN-----GQLLQTLTGHS--S 509 (577)
T ss_dssp ---------EEEECCSSCEEEEEECTT---------------SCEEEEEETTSEEEEEETT-----SCEEEEEECCS--S
T ss_pred ---------EEECCCCCCEEEEEECCC---------------CCEEEEEECCCEEEEECCC-----CCEEEEEECCC--C
T ss_conf ---------997278997789999699---------------9999999198979999399-----97899986799--9
Q ss_pred CEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEE
Q ss_conf 212466641000123333578643223455334689978999953442489999
Q 000603 851 AVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWL 904 (1398)
Q Consensus 851 aV~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~iW~ 904 (1398)
.|++++|. .++.+|++++.|+.|++|+
T Consensus 510 ~v~~l~~s---------------------------~dg~~l~s~~~dg~v~lwd 536 (577)
T 2ymu_A 510 SVRGVAFS---------------------------PDGQTIASASDDKTVKLWN 536 (577)
T ss_dssp CEEEEEEC---------------------------TTSSCEEEEETTSEEEEEC
T ss_pred CEEEEEEC---------------------------CCCCEEEEEECCCEEEEEE
T ss_conf 98999991---------------------------8999999998969999996
No 6
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=1.00 E-value=1 Score=451.35 Aligned_cols=537 Identities=14% Similarity=0.169 Sum_probs=383.2
Q ss_pred EEEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEE
Q ss_conf 79986608348999971034645898752100999994-99699999147889999888863211115553146887689
Q 000603 58 RPFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVF 136 (1398)
Q Consensus 58 ~~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~ 136 (1398)
..+.+|.+ .|.+++|+ |++ .++++++ |++|++|++.+ .+.+..+.+|.+.|.
T Consensus 609 ~~~~~h~~-~v~~~~~s-------~~~----~~l~s~~~d~~i~vw~~~~---------------~~~~~~~~~h~~~v~ 661 (1249)
T 3sfz_A 609 LVVRPHTD-AVYHACFS-------QDG----QRIASCGADKTLQVFKAET---------------GEKLLDIKAHEDEVL 661 (1249)
T ss_dssp EEECCCSS-CEEEEEEC-------TTS----SEEEEEETTSCEEEEETTT---------------CCEEEEECCCSSCEE
T ss_pred EEEECCCC-CEEEEEEC-------CCC----CEEEEEECCCEEEEEECCC---------------CCEEEEECCCCCCEE
T ss_conf 78716666-48999987-------999----9899994889499999899---------------978887606777789
Q ss_pred EEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCC
Q ss_conf 99998413899499999889909999957991999983488631899986237988859999979990999992468766
Q 000603 137 DVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVA 216 (1398)
Q Consensus 137 ~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~ 216 (1398)
+++|+| ++.+|++++.|++|++||+.+++.+..+..+.. .+.++.+.+. .+..++++|+.|+.|++||+.
T Consensus 662 ~~~~s~---~~~~l~s~~~d~~v~vwd~~~~~~~~~~~~~~~-~v~~~~~~~~-~~~~~l~sg~~d~~v~vwd~~----- 731 (1249)
T 3sfz_A 662 CCAFSS---DDSYIATCSADKKVKIWDSATGKLVHTYDEHSE-QVNCCHFTNK-SNHLLLATGSNDFFLKLWDLN----- 731 (1249)
T ss_dssp EEEECT---TSSEEEEEETTSEEEEEETTTCCEEEEEECCSS-CEEEEEECSS-SSCCEEEEEETTSCEEEEETT-----
T ss_pred EEEEEC---CCCEEEEEECCCEEEEEECCCCCEEEEECCCCC-CEEEEEEECC-CCCEEEEEEECCCEEEEEECC-----
T ss_conf 999926---999899981899599987799936899958997-3799998408-996599998089709999899-----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCCC
Q ss_conf 66899998777898887620253135664057999927668889999948999999997899099999578941388870
Q 000603 217 PLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDSI 296 (1398)
Q Consensus 217 ~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~~ 296 (1398)
++..+..+.+|.+.|.+++|+|+++++++++.|+.|++||+.++.. .
T Consensus 732 ----------------------------~~~~~~~~~~h~~~v~~~~~sp~~~~l~s~s~dg~v~vwd~~~~~~-----~ 778 (1249)
T 3sfz_A 732 ----------------------------QKECRNTMFGHTNSVNHCRFSPDDELLASCSADGTLRLWDVRSANE-----R 778 (1249)
T ss_dssp ----------------------------SSSEEEEECCCSSCEEEEEECSSTTEEEEEESSSEEEEEEGGGTEE-----E
T ss_pred ----------------------------CCCHHHEECCCCCCEEEEEEECCCCEEEEEECCCEEEEEECCCCCC-----C
T ss_conf ----------------------------9634220127779788999925999899997898599996888865-----5
Q ss_pred EEEEE--------EEEECCCCCEEEEEEC--CCEEEEEECCCCEEEECC-CCCEEEEEE-CCCCCCEEEEEECCCCCEEE
Q ss_conf 37630--------4874088447999991--998999958992999938-994689992-02486579999948999999
Q 000603 297 EEVGS--------SVLYGHNARVWDCCLT--DSFIITAGEDCTCRVWGS-DGKQLKMIK-EHIGRGIWRCLYDSLSSLLV 364 (1398)
Q Consensus 297 ~~i~~--------~~~~gh~~~V~~i~~s--~~~lvsgs~Dg~i~iWd~-~g~~l~~l~-~h~~~~V~si~~spdg~~lv 364 (1398)
..+.. .....+...+.+++|+ +..+++++ ++.+.+|+. ++..+..+. +|.. .|.+++|+|++.+++
T Consensus 779 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~s~dg~~l~~~~-~~~v~~~d~~~~~~~~~~~~~~~~-~v~~~~~sp~~~~l~ 856 (1249)
T 3sfz_A 779 KSINVKRFFLSSEDPPEDVEVIVKCCSWSADGDKIIVAA-KNKVLLFDIHTSGLLAEIHTGHHS-TIQYCDFSPYDHLAV 856 (1249)
T ss_dssp EEEECCCCC--------CCCCCBCCCCBCTTSSEEEEEE-TTEEEEEETTTCCEEEEEECSSSS-CCCEEEECSSTTEEE
T ss_pred CEECCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEEEEC-CCCEEEEEECCCCCEEEECCCCCC-CEEEEEECCCCCEEE
T ss_conf 302023210246776445650179999978998899975-895999995689723577478777-607999827888899
Q ss_pred EEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEE-EECCCCEE
Q ss_conf 99828939999959887553247876410168730799652797542341167897479999911990999-99089389
Q 000603 365 TAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYI-ATNHGYLY 443 (1398)
Q Consensus 365 tgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv-~t~~g~i~ 443 (1398)
+++.||.|++|++.... ....+.+|...|.+++|+|++..++ ++.++.+.
T Consensus 857 ~~~~dg~v~vwd~~~~~-----------------------------~~~~~~~h~~~v~~v~~spdg~~l~s~s~dg~v~ 907 (1249)
T 3sfz_A 857 IALSQYCVELWNIDSRL-----------------------------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIR 907 (1249)
T ss_dssp EECSSSCEEEEETTTTE-----------------------------EEEEECCCSSCEEEEEECTTSSEEEEEETTSCEE
T ss_pred EEECCCEEEEEECCCCC-----------------------------EEEECCCCCCCEEEEEECCCCCEEEEEECCCEEE
T ss_conf 99479869999867895-----------------------------6532278766568999989999899995897289
Q ss_pred EEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCC
Q ss_conf 99950388850489785248963999850689998868999699999289979999971785465113566640475341
Q 000603 444 HTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQ 523 (1398)
Q Consensus 444 ~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~ 523 (1398)
.|++........ .......... . .+....++.....+.+.++....+.... . ....
T Consensus 908 vw~~~~~~~~~~-----~~~~~~~~~~-~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~--~~~~ 963 (1249)
T 3sfz_A 908 VWETKKVCKNSA-----IVLKQEIDVV-F--------QENETMVLAVDNIRGLQLIAGKTGQIDY--------L--PEAQ 963 (1249)
T ss_dssp EEEHHHHHSCCS-----SSEEEEEEEE-E--------ETTEEEEEEEESSSSEEEEEESSCCEEE--------E--CCSC
T ss_pred EEECCCCCEEEE-----ECCCCEEEEE-E--------CCCCCEEEEECCCCCEEEEECCCCEEEE--------C--CCCC
T ss_conf 887466520102-----1133103689-7--------5998689981377624898447650897--------2--5672
Q ss_pred EEEEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCE
Q ss_conf 66899975199929999818993999956899986432367642021111111346981899995329988999617881
Q 000603 524 LLGTYWCKSLGHRFIFTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGN 603 (1398)
Q Consensus 524 ~l~~~~~~s~d~~~L~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGt 603 (1398)
+. ..+++++++++++++.+|.+++|++..... ... ..+|...|++++|+|++++|++|+.||+
T Consensus 964 i~--~~~~sp~g~~l~~g~~~g~i~i~d~~~~~~--------------~~~-~~~h~~~v~~l~~s~dg~~l~s~~~dg~ 1026 (1249)
T 3sfz_A 964 VS--CCCLSPHLEYVAFGDEDGAIKIIELPNNRV--------------FSS-GVGHKKAVRHIQFTADGKTLISSSEDSV 1026 (1249)
T ss_dssp EE--EEEECTTSSEEEEEETTSCCEEEETTTTSC--------------EEE-CCCCSSCCCCEEECSSSSCEEEECSSSB
T ss_pred EE--EEEECCCCCEEEEECCCCCEEEEECCCCCE--------------EEE-CCCCCCCEEEEEECCCCCEEEEECCCCE
T ss_conf 78--999958997799986999889997578723--------------443-0367771689999899998999869987
Q ss_pred EEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEE
Q ss_conf 99998797433564544301105630001345764489999974089830999972896399999946996125652121
Q 000603 604 LVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQ 683 (1398)
Q Consensus 604 I~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~ 683 (1398)
|++|++.++.. .. + ..|. ..|+++.|.+ + ..+++++.||.+++|++..+.....
T Consensus 1027 i~vwd~~~~~~--------~~------~-~~~~-~~v~~~~~~~---~-~~l~~~~~dg~v~vwd~~~~~~~~~------ 1080 (1249)
T 3sfz_A 1027 IQVWNWQTGDY--------VF------L-QAHQ-ETVKDFRLLQ---D-SRLLSWSFDGTVKVWNVITGRIERD------ 1080 (1249)
T ss_dssp EEEEETTTTEE--------EC------C-BCCS-SCEEEEEECS---S-SEEEEEESSSEEEEEETTTTCCCEE------
T ss_pred EEEEECCCCCE--------EE------E-ECCC-CCEEEEEECC---C-CCEEEEECCCCEEEEECCCCCEEEE------
T ss_conf 99998799966--------89------8-5278-7389999908---9-9589997889689988898865588------
Q ss_pred EEEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEE
Q ss_conf 10011167576288944745531796012641999928663199875216855422000278899841999995668999
Q 000603 684 VKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHI 763 (1398)
Q Consensus 684 ~~~~~~ie~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~ 763 (1398)
T Consensus 1081 -------------------------------------------------------------------------------- 1080 (1249)
T 3sfz_A 1081 -------------------------------------------------------------------------------- 1080 (1249)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred EEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCC
Q ss_conf 99751157677666443347875306587863155324533222378997299992268719999760899642100122
Q 000603 764 HRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLL 843 (1398)
Q Consensus 764 ~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l 843 (1398)
...|...|++++|+|+ +.++++|+.|++|++|.+... .....+
T Consensus 1081 ------------------~~~~~~~v~~~~~s~d---------------~~~l~s~s~d~~v~iwd~~~~----~~~~~l 1123 (1249)
T 3sfz_A 1081 ------------------FTCHQGTVLSCAISSD---------------ATKFSSTSADKTAKIWSFDLL----SPLHEL 1123 (1249)
T ss_dssp ------------------EECCSSCCCCEEECSS---------------SSSCEEECCSSCCCEECSSSS----SCSBCC
T ss_pred ------------------ECCCCCCEEEEEECCC---------------CCEEEEECCCCCEEEEECCCC----CEEEEE
T ss_conf ------------------7466884899999899---------------998999849994899878985----001255
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEC
Q ss_conf 43457542124666410001233335786432234553346899789999534424899999733
Q 000603 844 GEHVGGSAVRSICFVSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHR 908 (1398)
Q Consensus 844 ~~H~~gsaV~~i~f~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~iW~~~~~ 908 (1398)
.+|. ..|++++|. .++.+|++++.|+.|++|++...
T Consensus 1124 ~~h~--~~v~~~~~s---------------------------~dg~~lat~~~dg~i~vwd~~~~ 1159 (1249)
T 3sfz_A 1124 KGHN--GCVRCSAFS---------------------------LDGILLATGDDNGEIRIWNVSDG 1159 (1249)
T ss_dssp CCCS--SCEEEEEEC---------------------------SSSSEEEEEETTSCCCEEESSSS
T ss_pred CCCC--CCEEEEEEC---------------------------CCCCEEEEEECCCEEEEEECCCC
T ss_conf 0687--767999997---------------------------99998999828997999988999
No 7
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=436.90 Aligned_cols=582 Identities=13% Similarity=0.122 Sum_probs=449.9
Q ss_pred CEEEEECCCCEECCCEEEEEEEECCCCCCCCCEEEEEECCCEEEEECCCC----EEEEEEEEEECCC-EEEEEEECCCCC
Q ss_conf 49999578670036349999972189889988999980891999988999----3887998660834-899997103464
Q 000603 5 DLSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGSGSQVLLYDLEAG----TLIRPFQVFHGIR-LHGISCNFINCT 79 (1398)
Q Consensus 5 tv~iWdl~~~~h~~~Vtaiafs~~pd~~~~g~lLaaG~dg~I~Iwd~~tg----~~i~~~~~~~~~~-V~~i~fs~~~~~ 79 (1398)
...+|......|.+.|++++|+ |+ +++|+++.++.|+|||+.++ +.+..+.+|.. . |.+++|+
T Consensus 6 ~~~~~~~~~~~~~~~v~~~~~s--pd----g~~l~~~~~~~v~v~~~~~~~~~~~~~~~~~~h~~-~~v~~~~~s----- 73 (615)
T 1pgu_A 6 LKEIIPPQPSTQRNFTTHLSYD--PT----TNAIAYPCGKSAFVRCLDDGDSKVPPVVQFTGHGS-SVVTTVKFS----- 73 (615)
T ss_dssp EEEEECCCCCCCTTCCCCCEEE--TT----TTEEEEEETTEEEEEECCSSCCSSCSEEEECTTTT-SCEEEEEEC-----
T ss_pred HHHCCCCCCCCCCCCEEEEEEC--CC----CCEEEEECCCEEEEEECCCCCCCCCCCEEEECCCC-CEEEEEEEC-----
T ss_conf 5231599987765853689988--99----99799935984999977788776514318805788-449999979-----
Q ss_pred CCC--CCCCCEEEEEEEC-CCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECC
Q ss_conf 589--8752100999994-9969999914788999988886321111555314688768999998413899499999889
Q 000603 80 EGS--VSTRVTFEVALFG-EKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSD 156 (1398)
Q Consensus 80 ~~p--dg~~~~~~la~~g-d~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~D 156 (1398)
| ++ .++++++ |+.|++|++.+... ......+....+.+|...|.+++|+| ++.+|++++.+
T Consensus 74 --p~~~~----~~l~s~~~dg~v~vw~~~~~~~-------~~~~~~~~~~~~~~~~~~v~~~~~s~---~~~~l~~~~~~ 137 (615)
T 1pgu_A 74 --PIKGS----QYLCSGDESGKVIVWGWTFDKE-------SNSVEVNVKSEFQVLAGPISDISWDF---EGRRLCVVGEG 137 (615)
T ss_dssp --SSTTC----CEEEEEETTSEEEEEEEEEEGG-------GTEEEEEEEEEEECCSSCEEEEEECT---TSSEEEEEECC
T ss_pred --CCCCC----CEEEEECCCCEEEEEECCCCCC-------CCCCCCCCCCHHHCCCCCEEEEEEEC---CCCEEEEECCC
T ss_conf --67899----8899964898799976888765-------54455420001112566379999907---99989993168
Q ss_pred ----CEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCC-EEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCC
Q ss_conf ----90999995799199998348863189998623798885-9999979990999992468766668999987778988
Q 000603 157 ----NSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEAL-RIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSS 231 (1398)
Q Consensus 157 ----g~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~-~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~ 231 (1398)
+.|.+|| .++.+..+..+.. .+.++.+ ++++. .+++++.|+.|++|+..
T Consensus 138 ~~~~~~v~~~d--~~~~~~~~~~~~~-~v~~~~~---~~~~~~~l~~~~~d~~v~vwd~~-------------------- 191 (615)
T 1pgu_A 138 RDNFGVFISWD--SGNSLGEVSGHSQ-RINACHL---KQSRPMRSMTVGDDGSVVFYQGP-------------------- 191 (615)
T ss_dssp SSCSEEEEETT--TCCEEEECCSCSS-CEEEEEE---CSSSSCEEEEEETTTEEEEEETT--------------------
T ss_pred CCCCCEEEEEE--CCCCCEEEECCCC-CEEEEEE---CCCCCCEEEEEECCCCEEEEECC--------------------
T ss_conf 77755799997--8981031306774-3889998---87899689999579959999699--------------------
Q ss_pred CCCCEEEECCCCCCEEEEEEEECCCC---CEEEEEECCC-CCEEEEEECCCEEEEEECCCCCCCCCCCCEEEEEEEE-E-
Q ss_conf 87620253135664057999927668---8899999489-9999999789909999957894138887037630487-4-
Q 000603 232 SDFKCFKLQDQQHTAVNLFRLVGHEG---SIFRIEWSSC-GSKLVSVSDDRSARIWEVRAEYWKDSDSIEEVGSSVL-Y- 305 (1398)
Q Consensus 232 ~~~~~i~i~~~~~~~~~i~~l~gH~~---~I~~iafspd-g~~LvS~s~Dg~I~iWd~~~~~~~~~~~~~~i~~~~~-~- 305 (1398)
..+.+..+.+|.. .|.+++|+|+ ++++++++.|+.|++||+.+++. +. .+ .
T Consensus 192 -------------~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~l~~~~~dg~i~vwd~~~~~~-----~~-----~~~~~ 248 (615)
T 1pgu_A 192 -------------PFKFSASDRTHHKQGSFVRDVEFSPDSGEFVITVGSDRKISCFDGKSGEF-----LK-----YIEDD 248 (615)
T ss_dssp -------------TBEEEEEECSSSCTTCCEEEEEECSTTCCEEEEEETTCCEEEEETTTCCE-----EE-----ECCBT
T ss_pred -------------CCCEEEEECCCCCCCCEEEEEEECCCCCCEEEEEECCCEEEEEECCCCCE-----EE-----EECCC
T ss_conf -------------96101320256777742899997897788899986898089998999978-----58-----95254
Q ss_pred --CCCCCEEEEEEC-CCEEEEEECCCCEEEECC-CCCEEEEEECCC---CCCEEEEEECCCCCEEEEEECCCCEEEEECC
Q ss_conf --088447999991-998999958992999938-994689992024---8657999994899999999828939999959
Q 000603 306 --GHNARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHI---GRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ 378 (1398)
Q Consensus 306 --gh~~~V~~i~~s-~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~---~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~ 378 (1398)
+|...|.+++|+ +.++++++.|+.+++||+ +++.+..+..+. ...+.++.+. ++.++++++.|+.+++|++.
T Consensus 249 ~~~~~~~v~~~~~~~~~~l~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~g~i~~~d~~ 327 (615)
T 1pgu_A 249 QEPVQGGIFALSWLDSQKFATVGADATIRVWDVTTSKCVQKWTLDKQQLGNQQVGVVAT-GNGRIISLSLDGTLNFYELG 327 (615)
T ss_dssp TBCCCSCEEEEEESSSSEEEEEETTSEEEEEETTTTEEEEEEECCTTCGGGCEEEEEEE-ETTEEEEEETTSCEEEEETT
T ss_pred CCCCCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEEECCCCEEEEECC
T ss_conf 44567755899981899799984899489997888927878847877545714699918-99769999789978999888
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECCCCCEEEEE
Q ss_conf 88755324787641016873079965279754234116789747999991199099999089389999503888504897
Q 000603 379 AFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDMDSVNWNKI 458 (1398)
Q Consensus 379 ~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~~~~~w~~i 458 (1398)
.. ..+..+..|...|.+++| |+ ++.++.+|.+. +|+.. . +
T Consensus 328 ~~-----------------------------~~~~~~~~~~~~v~~~~~-~~--l~~~~~dg~i~---~w~~~--~---~ 367 (615)
T 1pgu_A 328 HD-----------------------------EVLKTISGHNKGITALTV-NP--LISGSYDGRIM---EWSSS--S---M 367 (615)
T ss_dssp EE-----------------------------EEEEEECCCSSCEEEEET-TT--TEEEETTSCEE---ETTTT--E---E
T ss_pred CC-----------------------------CEEEEEECCCCCEEEEEE-CC--CEEECCCCEEE---EEECH--H---H
T ss_conf 99-----------------------------288999477787899995-67--48987999599---98752--4---1
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECCCCCCEEEEEEEECCCCCEE
Q ss_conf 85248963999850689998868999699999289979999971785465113566640475341668999751999299
Q 000603 459 LQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAGIERQLLGTYWCKSLGHRFI 538 (1398)
Q Consensus 459 ~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~d~~~L 538 (1398)
. ..+...+.++.+ +.+..+++++.|+.+++|++..+.... .. ...++++++.++
T Consensus 368 ~-~~~~~~v~~~~~---------~~~~~l~~~~~d~~i~~~~~~~~~~~~--------------~~--~~~~~s~~~~~~ 421 (615)
T 1pgu_A 368 H-QDHSNLIVSLDN---------SKAQEYSSISWDDTLKVNGITKHEFGS--------------QP--KVASANNDGFTA 421 (615)
T ss_dssp E-CCCCSCEEEEEC---------CSTTCCEEEETTTEEEETTEEEEECSS--------------CE--EEEEECSSSEEE
T ss_pred C-CCCCCCEEEEEE---------CCCCEEEEEECCCCEEEEECCCCCCCC--------------CC--EEEEECCCCCEE
T ss_conf 5-755685179997---------898679999589979998866676367--------------84--699982898789
Q ss_pred EEECCCCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECC-CCEEEEEECCCCCCCCC
Q ss_conf 99818993999956899986432367642021111111346981899995329988999617-88199998797433564
Q 000603 539 FTADPKGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDL-RGNLVLFPLLRDLLNDK 617 (1398)
Q Consensus 539 ~s~s~dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~-dGtI~iwd~~~~~~~~~ 617 (1398)
+++ .++.+.+|++.... ....+ .+...+++++++ +++|++|+. ||.|++|++....
T Consensus 422 ~~~-~~~~~~~~~~~~~~--------------~~~~~--~~~~~~~~~~~~--~~~l~~~~~~d~~i~~~~~~~~~---- 478 (615)
T 1pgu_A 422 VLT-NDDDLLILQSFTGD--------------IIKSV--RLNSPGSAVSLS--QNYVAVGLEEGNTIQVFKLSDLE---- 478 (615)
T ss_dssp EEE-TTSEEEEEETTTCC--------------EEEEE--ECSSCEEEEEEC--SSEEEEEETTTSCEEEEETTEEE----
T ss_pred EEE-CCCCEEEEECCCCC--------------EEEEC--CCCCCCEEEEEC--CCEEEEEECCCCEEEEEECCCCC----
T ss_conf 996-79826999446786--------------65551--567872077883--88899965689869999888854----
Q ss_pred CCCCEEEECCCCEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCC
Q ss_conf 54430110563000134576448999997408983099997289639999994699612565212110011167576288
Q 000603 618 SVALHVEVSPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAEN 697 (1398)
Q Consensus 618 ~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~ 697 (1398)
+.. ..+ ..|. ..|+++.|+ +++.+|++++.||.+++|++..+.. +.
T Consensus 479 -------~~~-~~~-~~~~-~~v~~~~~s---~~g~~l~~~~~dg~i~iw~~~~~~~---------~~------------ 524 (615)
T 1pgu_A 479 -------VSF-DLK-TPLR-AKPSYISIS---PSETYIAAGDVMGKILLYDLQSREV---------KT------------ 524 (615)
T ss_dssp -------EEE-ECS-SCCS-SCEEEEEEC---TTSSEEEEEETTSCEEEEETTTTEE---------EE------------
T ss_pred -------CCC-CCC-CCCC-CCEEEEEEC---CCCCEEEECCCCCEEEEEECCCCCC---------EE------------
T ss_conf -------353-336-7765-750799998---9999899817998599865777762---------46------------
Q ss_pred CCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCC
Q ss_conf 94474553179601264199992866319987521685542200027889984199999566899999751157677666
Q 000603 698 NSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFP 777 (1398)
Q Consensus 698 ~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~ 777 (1398)
T Consensus 525 -------------------------------------------------------------------------------- 524 (615)
T 1pgu_A 525 -------------------------------------------------------------------------------- 524 (615)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCCCCCCCCCCCCCCCEEEEEE
Q ss_conf 44334787530658786315532453322237899729999226871999976089964210012243457542124666
Q 000603 778 KNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWSSSKLLGEHVGGSAVRSICF 857 (1398)
Q Consensus 778 ~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~~~~~~~~~~~~l~~H~~gsaV~~i~f 857 (1398)
...+.|...|++++|+|..... .....++.+|++|++|++|++|.+.... .....+.+|. ..|++++|
T Consensus 525 --~~~~~h~~~v~~~~~sp~~~~~-----~~~~~~~~~l~~~~~dg~i~iw~~~~~~---~~~~~~~~h~--~~v~~l~~ 592 (615)
T 1pgu_A 525 --SRWAFRTSKINAISWKPAEKGA-----NEEEIEEDLVATGSLDTNIFIYSVKRPM---KIIKALNAHK--DGVNNLLW 592 (615)
T ss_dssp --CCSCCCSSCEEEEEECCCC-----------CCSCCEEEEEETTSCEEEEESSCTT---CCEEETTSST--TCEEEEEE
T ss_pred --EEECCCCCCEEEEEECCCCCCC-----CCCCCCCCEEEEECCCCCEEEEECCCCC---EECHHHHCCC--CCEEEEEE
T ss_conf --7604788714699976832345-----3324688889998179719999778885---4031133594--30589997
Q ss_pred EEEECCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEE
Q ss_conf 41000123333578643223455334689978999953442489999973
Q 000603 858 VSEINQISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRH 907 (1398)
Q Consensus 858 ~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~iW~~~~ 907 (1398)
.+ ++. |++++.|+.|++|+++.
T Consensus 593 s~---------------------------~~~-l~s~~~d~~v~iw~~~~ 614 (615)
T 1pgu_A 593 ET---------------------------PST-LVSSGADACIKRWNVVL 614 (615)
T ss_dssp EE---------------------------TTE-EEEEETTSCEEEEEEC-
T ss_pred CC---------------------------CCC-EEEECCCCEEEEEEEEC
T ss_conf 38---------------------------997-28845996399996015
No 8
>1pgu_A Actin interacting protein 1; WD repeat, seven-bladed beta-propeller, protein binding; 2.30A {Saccharomyces cerevisiae} SCOP: b.69.4.1 b.69.4.1 PDB: 1pi6_A
Probab=1.00 E-value=1 Score=418.40 Aligned_cols=528 Identities=13% Similarity=0.134 Sum_probs=408.6
Q ss_pred CCCCEEEEECCCC----E-------ECCC-EEEEEEEECC--CCCCCCCEEEEEE-CCCEEEEECCCC--------EEEE
Q ss_conf 9974999957867----0-------0363-4999997218--9889988999980-891999988999--------3887
Q 000603 2 GKKDLSEWRLDVG----Q-------YLGE-ISALCFVHLP--SHLSSLPFLLAGS-GSQVLLYDLEAG--------TLIR 58 (1398)
Q Consensus 2 ~D~tv~iWdl~~~----~-------h~~~-Vtaiafs~~p--d~~~~g~lLaaG~-dg~I~Iwd~~tg--------~~i~ 58 (1398)
.|+.+++|++.++ + |.++ |++++|+ | + +++|++|+ ++.|+|||+.++ +.+.
T Consensus 37 ~~~~v~v~~~~~~~~~~~~~~~~~~h~~~~v~~~~~s--p~~~----~~~l~s~~~dg~v~vw~~~~~~~~~~~~~~~~~ 110 (615)
T 1pgu_A 37 CGKSAFVRCLDDGDSKVPPVVQFTGHGSSVVTTVKFS--PIKG----SQYLCSGDESGKVIVWGWTFDKESNSVEVNVKS 110 (615)
T ss_dssp ETTEEEEEECCSSCCSSCSEEEECTTTTSCEEEEEEC--SSTT----CCEEEEEETTSEEEEEEEEEEGGGTEEEEEEEE
T ss_pred CCCEEEEEECCCCCCCCCCCEEEECCCCCEEEEEEEC--CCCC----CCEEEEECCCCEEEEEECCCCCCCCCCCCCCCC
T ss_conf 5984999977788776514318805788449999979--6789----988999648987999768887655445542000
Q ss_pred EEEEEECCCEEEEEEECCCCCCCCCCCCCEEEEEEEC-C----CEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCC
Q ss_conf 9986608348999971034645898752100999994-9----9699999147889999888863211115553146887
Q 000603 59 PFQVFHGIRLHGISCNFINCTEGSVSTRVTFEVALFG-E----KRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSH 133 (1398)
Q Consensus 59 ~~~~~~~~~V~~i~fs~~~~~~~pdg~~~~~~la~~g-d----~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~ 133 (1398)
.+..|.. .|.+++|+ |++ ..+++++ + +.|.+|+ . .+....+.+|..
T Consensus 111 ~~~~~~~-~v~~~~~s-------~~~----~~l~~~~~~~~~~~~v~~~d--~---------------~~~~~~~~~~~~ 161 (615)
T 1pgu_A 111 EFQVLAG-PISDISWD-------FEG----RRLCVVGEGRDNFGVFISWD--S---------------GNSLGEVSGHSQ 161 (615)
T ss_dssp EEECCSS-CEEEEEEC-------TTS----SEEEEEECCSSCSEEEEETT--T---------------CCEEEECCSCSS
T ss_pred HHHCCCC-CEEEEEEE-------CCC----CEEEEECCCCCCCCEEEEEE--C---------------CCCCEEEECCCC
T ss_conf 1112566-37999990-------799----98999316877755799997--8---------------981031306774
Q ss_pred CEEEEEEEEECCCCC-EEEEEECCCEEEEEECCCCEEEEEECCCCCC--EEEEEEEECCCCC-CCEEEEEECCCEEEEEE
Q ss_conf 689999984138994-9999988990999995799199998348863--1899986237988-85999997999099999
Q 000603 134 WVFDVCFLKVCNGNR-SLAIGCSDNSIRVWDISNSSIILEVHSPERC--LLYSMKLWGDNLE-ALRIASGTIYNEIIVWK 209 (1398)
Q Consensus 134 ~V~~v~fsp~~~dg~-~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~--~~~sv~~~~~s~d-~~~iasgs~dg~I~iWd 209 (1398)
.|.+++|+| ++. .+++++.|+.|++||+.+++.+..+..+... .+.++.+ +++ +.++++++.|+.|++|+
T Consensus 162 ~v~~~~~~~---~~~~~l~~~~~d~~v~vwd~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~~l~~~~~dg~i~vwd 235 (615)
T 1pgu_A 162 RINACHLKQ---SRPMRSMTVGDDGSVVFYQGPPFKFSASDRTHHKQGSFVRDVEF---SPDSGEFVITVGSDRKISCFD 235 (615)
T ss_dssp CEEEEEECS---SSSCEEEEEETTTEEEEEETTTBEEEEEECSSSCTTCCEEEEEE---CSTTCCEEEEEETTCCEEEEE
T ss_pred CEEEEEECC---CCCCEEEEEECCCCEEEEECCCCCEEEEECCCCCCCCEEEEEEE---CCCCCCEEEEEECCCEEEEEE
T ss_conf 388999887---89968999957995999969996101320256777742899997---897788899986898089998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEE-E---CCCCCEEEEEECCCCCEEEEEECCCEEEEEEC
Q ss_conf 2468766668999987778988876202531356640579999-2---76688899999489999999978990999995
Q 000603 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRL-V---GHEGSIFRIEWSSCGSKLVSVSDDRSARIWEV 285 (1398)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l-~---gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~ 285 (1398)
+. .++.+..+ . +|...|.+++|+ ++.++++++.|+.|++||+
T Consensus 236 ~~---------------------------------~~~~~~~~~~~~~~~~~~v~~~~~~-~~~~l~~~~~d~~i~~wd~ 281 (615)
T 1pgu_A 236 GK---------------------------------SGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADATIRVWDV 281 (615)
T ss_dssp TT---------------------------------TCCEEEECCBTTBCCCSCEEEEEES-SSSEEEEEETTSEEEEEET
T ss_pred CC---------------------------------CCCEEEEECCCCCCCCCCEEEEEEC-CCCEEEEECCCCCEEEEEC
T ss_conf 99---------------------------------9978589525444567755899981-8997999848994899978
Q ss_pred CCCCCCCCCCCEEEEEEEEECC----CCCEEEEEEC-CCEEEEEECCCCEEEECC-CCCEEEEEECCCCCCEEEEEECCC
Q ss_conf 7894138887037630487408----8447999991-998999958992999938-994689992024865799999489
Q 000603 286 RAEYWKDSDSIEEVGSSVLYGH----NARVWDCCLT-DSFIITAGEDCTCRVWGS-DGKQLKMIKEHIGRGIWRCLYDSL 359 (1398)
Q Consensus 286 ~~~~~~~~~~~~~i~~~~~~gh----~~~V~~i~~s-~~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h~~~~V~si~~spd 359 (1398)
.+++. .. .+..+ ...+.++.+. +.++++++.|+.+++|++ +++.+..+.+|.. .|++++| |+
T Consensus 282 ~~~~~-----~~-----~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~i~~~d~~~~~~~~~~~~~~~-~v~~~~~-~~ 349 (615)
T 1pgu_A 282 TTSKC-----VQ-----KWTLDKQQLGNQQVGVVATGNGRIISLSLDGTLNFYELGHDEVLKTISGHNK-GITALTV-NP 349 (615)
T ss_dssp TTTEE-----EE-----EEECCTTCGGGCEEEEEEEETTEEEEEETTSCEEEEETTEEEEEEEECCCSS-CEEEEET-TT
T ss_pred CCCCE-----EE-----EECCCCCCCCCCEEEEEECCCCEEEEEECCCCEEEEECCCCCEEEEEECCCC-CEEEEEE-CC
T ss_conf 88927-----87-----8847877545714699918997699997899789998889928899947778-7899995-67
Q ss_pred CCEEEEEECCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECC
Q ss_conf 99999998289399999598875532478764101687307996527975423411678974799999119909999908
Q 000603 360 SSLLVTAGFDSAIKVHQFQAFLPGSLESHPEAKEFNGRTEIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNH 439 (1398)
Q Consensus 360 g~~lvtgg~Dg~I~iwdl~~~~l~~l~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~ 439 (1398)
+++++.||.|++|++. .+ . ..|...|.+++|.++..+++++.+
T Consensus 350 ---l~~~~~dg~i~~w~~~--~~------------------------------~--~~~~~~v~~~~~~~~~~l~~~~~d 392 (615)
T 1pgu_A 350 ---LISGSYDGRIMEWSSS--SM------------------------------H--QDHSNLIVSLDNSKAQEYSSISWD 392 (615)
T ss_dssp ---TEEEETTSCEEETTTT--EE------------------------------E--CCCCSCEEEEECCSTTCCEEEETT
T ss_pred ---CEEECCCCEEEEEECH--HH------------------------------C--CCCCCCEEEEEECCCCEEEEEECC
T ss_conf ---4898799959998752--41------------------------------5--755685179997898679999589
Q ss_pred CCEEEEEEECCCCCEEEEEEEECCCCCEEEEECCCCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEECC
Q ss_conf 93899995038885048978524896399985068999886899969999928997999997178546511356664047
Q 000603 440 GYLYHTKLCDMDSVNWNKILQVSEGMPIICMDLLSNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWSAG 519 (1398)
Q Consensus 440 g~i~~~~l~~~~~~~w~~i~~~~~~~~i~~l~~~~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~~~ 519 (1398)
+.+.. |+..... ......++.+ .+++.+++.+ .++.+.+|+..++...... .
T Consensus 393 ~~i~~---~~~~~~~--------~~~~~~~~~~--------s~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------~-- 444 (615)
T 1pgu_A 393 DTLKV---NGITKHE--------FGSQPKVASA--------NNDGFTAVLT-NDDDLLILQSFTGDIIKSV------R-- 444 (615)
T ss_dssp TEEEE---TTEEEEE--------CSSCEEEEEE--------CSSSEEEEEE-TTSEEEEEETTTCCEEEEE------E--
T ss_pred CCEEE---EECCCCC--------CCCCCEEEEE--------CCCCCEEEEE-CCCCEEEEECCCCCEEEEC------C--
T ss_conf 97999---8866676--------3678469998--------2898789996-7982699944678665551------5--
Q ss_pred CCCCEEEEEEEECCCCCEEEEECC-CCCEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 534166899975199929999818-9939999568999864323676420211111113469818999953299889996
Q 000603 520 IERQLLGTYWCKSLGHRFIFTADP-KGRLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG 598 (1398)
Q Consensus 520 ~~~~~l~~~~~~s~d~~~L~s~s~-dg~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatG 598 (1398)
....+.. ++++ ++++++++. |+.+++|++.... +.. .. ...|...|++++|+|++++|++|
T Consensus 445 ~~~~~~~--~~~~--~~~l~~~~~~d~~i~~~~~~~~~------------~~~-~~-~~~~~~~v~~~~~s~~g~~l~~~ 506 (615)
T 1pgu_A 445 LNSPGSA--VSLS--QNYVAVGLEEGNTIQVFKLSDLE------------VSF-DL-KTPLRAKPSYISISPSETYIAAG 506 (615)
T ss_dssp CSSCEEE--EEEC--SSEEEEEETTTSCEEEEETTEEE------------EEE-EC-SSCCSSCEEEEEECTTSSEEEEE
T ss_pred CCCCCEE--EEEC--CCEEEEEECCCCEEEEEECCCCC------------CCC-CC-CCCCCCCEEEEEECCCCCEEEEC
T ss_conf 6787207--7883--88899965689869999888854------------353-33-67765750799998999989981
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEEEEC-------CCCEEEEEECCCCCEEEEEEEC
Q ss_conf 178819999879743356454430110563000134576448999997408-------9830999972896399999946
Q 000603 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVAKLR-------SNQTEIRSTGGDGCICYLEYDK 671 (1398)
Q Consensus 599 s~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~~~~-------~~~~~l~S~g~DG~i~iw~i~~ 671 (1398)
+.||.|++|++.+.. +...+.+.|. ..|+++.|++.. .++.+|++++.||.|++|+++.
T Consensus 507 ~~dg~i~iw~~~~~~-------------~~~~~~~~h~-~~v~~~~~sp~~~~~~~~~~~~~~l~~~~~dg~i~iw~~~~ 572 (615)
T 1pgu_A 507 DVMGKILLYDLQSRE-------------VKTSRWAFRT-SKINAISWKPAEKGANEEEIEEDLVATGSLDTNIFIYSVKR 572 (615)
T ss_dssp ETTSCEEEEETTTTE-------------EEECCSCCCS-SCEEEEEECCCC------CCSCCEEEEEETTSCEEEEESSC
T ss_pred CCCCEEEEEECCCCC-------------CEEEEECCCC-CCEEEEEECCCCCCCCCCCCCCCEEEEECCCCCEEEEECCC
T ss_conf 799859986577776-------------2467604788-71469997683234533246888899981797199997788
Q ss_pred CCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCE
Q ss_conf 99612565212110011167576288944745531796012641999928663199875216855422000278899841
Q 000603 672 DRESLEFIGMKQVKELSLIQSVSAENNSIDLASCNYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKN 751 (1398)
Q Consensus 672 ~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~ 751 (1398)
+... +
T Consensus 573 ~~~~-------------------------------~-------------------------------------------- 577 (615)
T 1pgu_A 573 PMKI-------------------------------I-------------------------------------------- 577 (615)
T ss_dssp TTCC-------------------------------E--------------------------------------------
T ss_pred CCEE-------------------------------C--------------------------------------------
T ss_conf 8540-------------------------------3--------------------------------------------
Q ss_pred EEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEEC
Q ss_conf 99999566899999751157677666443347875306587863155324533222378997299992268719999760
Q 000603 752 CFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFHGREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYS 831 (1398)
Q Consensus 752 ~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~HgreI~sv~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~ 831 (1398)
....+|...|++++|+++ +. |+||++|++|++|++.
T Consensus 578 ----------------------------~~~~~h~~~v~~l~~s~~---------------~~-l~s~~~d~~v~iw~~~ 613 (615)
T 1pgu_A 578 ----------------------------KALNAHKDGVNNLLWETP---------------ST-LVSSGADACIKRWNVV 613 (615)
T ss_dssp ----------------------------EETTSSTTCEEEEEEEET---------------TE-EEEEETTSCEEEEEEC
T ss_pred ----------------------------HHHHCCCCCEEEEEECCC---------------CC-EEEECCCCEEEEEEEE
T ss_conf ----------------------------113359430589997389---------------97-2884599639999601
Q ss_pred C
Q ss_conf 8
Q 000603 832 P 832 (1398)
Q Consensus 832 ~ 832 (1398)
.
T Consensus 614 ~ 614 (615)
T 1pgu_A 614 L 614 (615)
T ss_dssp -
T ss_pred C
T ss_conf 5
No 9
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=404.80 Aligned_cols=581 Identities=11% Similarity=0.083 Sum_probs=300.4
Q ss_pred CCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEECCCCEEEEEECCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEE
Q ss_conf 68876899999841389949999988990999995799199998348863189998623798885999997999099999
Q 000603 130 RLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWDISNSSIILEVHSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWK 209 (1398)
Q Consensus 130 gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWdl~~~~~~~~l~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd 209 (1398)
+|.+.|++++|+| ++.+||+|+.|++|++|+....+....+. +...+.+++| ++ +.+|++++.|+.|++||
T Consensus 15 gh~~~V~~lafsp---dg~~lAsgs~Dg~I~lw~~~~~~~~~~~~--~~~~V~~l~f---sp-g~~L~S~s~D~~v~lWd 85 (902)
T 2oaj_A 15 GMSSKPIAAAFDF---TQNLLAIATVTGEVHIYGQQQVEVVIKLE--DRSAIKEMRF---VK-GIYLVVINAKDTVYVLS 85 (902)
T ss_dssp ECSSCEEEEEEET---TTTEEEEEETTSEEEEECSTTCEEEEECS--SCCCEEEEEE---ET-TTEEEEEETTCEEEEEE
T ss_pred CCCCCCEEEEECC---CCCEEEEEECCCEEEEEECCCCEEEEECC--CCCCEEEEEE---CC-CCEEEEEECCCEEEEEE
T ss_conf 8899848999979---99989999297989999689947999868--9997799999---08-98899998959599998
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCEEEEEEEECCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCC
Q ss_conf 24687666689999877789888762025313566405799992766888999994899999999789909999957894
Q 000603 210 VDWEHVAPLLNSPEGNHAHGSSSDFKCFKLQDQQHTAVNLFRLVGHEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEY 289 (1398)
Q Consensus 210 ~~~~~~~~~~~~~~~~s~~~~~~~~~~i~i~~~~~~~~~i~~l~gH~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~ 289 (1398)
+. .++.+..+. |.+.|++++|+|+++++++++.|+.|++||+....
T Consensus 86 ~~---------------------------------~~~~~~~~~-~~~~V~~v~~sp~g~~l~sgs~dg~V~lwd~~~~~ 131 (902)
T 2oaj_A 86 LY---------------------------------SQKVLTTVF-VPGKITSIDTDASLDWMLIGLQNGSMIVYDIDRDQ 131 (902)
T ss_dssp TT---------------------------------TCSEEEEEE-CSSCEEEEECCTTCSEEEEEETTSCEEEEETTTTE
T ss_pred CC---------------------------------CCCEEEEEC-CCCCEEEEEECCCCCEEEEECCCCCEEEEECCCCC
T ss_conf 99---------------------------------996899974-89987999987999989999499929999999996
Q ss_pred CCCCCCCEEEEE-------EEEECCCCCEEEEEECC---CEEEEEECCCCEEEECC-CCCEEEEEECC------------
Q ss_conf 138887037630-------48740884479999919---98999958992999938-99468999202------------
Q 000603 290 WKDSDSIEEVGS-------SVLYGHNARVWDCCLTD---SFIITAGEDCTCRVWGS-DGKQLKMIKEH------------ 346 (1398)
Q Consensus 290 ~~~~~~~~~i~~-------~~~~gh~~~V~~i~~s~---~~lvsgs~Dg~i~iWd~-~g~~l~~l~~h------------ 346 (1398)
. .. ... ..+.+|...|++++|++ ..+++++.|+++ +||+ +++.+..+..|
T Consensus 132 ~-----~~-~~i~~~~~~~~~~~~h~~~V~sl~~sp~~~~~l~~g~~dg~v-lWd~~~~~~~~~~~~~~~~g~~~~~~~~ 204 (902)
T 2oaj_A 132 L-----SS-FKLDNLQKSSFFPAARLSPIVSIQWNPRDIGTVLISYEYVTL-TYSLVENEIKQSFIYELPPFAPGGDFSE 204 (902)
T ss_dssp E-----EE-EEECCHHHHHTCSSSCCCCCCEEEEETTEEEEEEEECSSCEE-EEETTTTEEEEEECCCBCTTCCCSTTCC
T ss_pred C-----CC-CEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCE-EEECCCCCEEEEEECCCCCCCCCCCCCC
T ss_conf 2-----65-030432100025445789738999766999989999189849-9987789657998335577677765443
Q ss_pred ------CCCCEEEEEECCCCCEEEEEECCCCEEEEECC-CCCCCC--CC---CCCCCCCCCCCCCEEEEEECCCCCCEEE
Q ss_conf ------48657999994899999999828939999959-887553--24---7876410168730799652797542341
Q 000603 347 ------IGRGIWRCLYDSLSSLLVTAGFDSAIKVHQFQ-AFLPGS--LE---SHPEAKEFNGRTEIFSIKIPNFSEQIRL 414 (1398)
Q Consensus 347 ------~~~~V~si~~spdg~~lvtgg~Dg~I~iwdl~-~~~l~~--l~---~~~~~v~~~~~~~~~~~~~~~~~~~~~~ 414 (1398)
.. .|++++|+|++.+|++++.||.|++||+. ++.+.. +. .|... . ..+. .
T Consensus 205 ~~~~~h~~-~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~~~~r~l~~~~~~~~~-----~------~~~~------~ 266 (902)
T 2oaj_A 205 KTNEKRTP-KVIQSLYHPNSLHIITIHEDNSLVFWDANSGHMIMARTVFETEINVPQ-----P------DYIR------D 266 (902)
T ss_dssp CTTSCBCC-CEEEEEECTTSSEEEEEETTCCEEEEETTTCCEEEEECSSCSCTTSCC-----T------TCCC------C
T ss_pred CCCCCCCC-CEEEEEECCCCCEEEEEECCCEEEEEECCCCCEEEEEEECCCCCCCCC-----C------CCCC------C
T ss_conf 32345677-768999859999999998999399998789968888850123457877-----7------6788------8
Q ss_pred CCCCCCCEEEEEEEC----CC-EEEEEECCC------CEEEEEEECCC---------------CCEEEEEEEECCCCCEE
Q ss_conf 167897479999911----99-099999089------38999950388---------------85048978524896399
Q 000603 415 TDSKSEYVRCLHLTS----ED-TLYIATNHG------YLYHTKLCDMD---------------SVNWNKILQVSEGMPII 468 (1398)
Q Consensus 415 ~~~~~~~V~~iafs~----dg-~llv~t~~g------~i~~~~l~~~~---------------~~~w~~i~~~~~~~~i~ 468 (1398)
...+.+.|.+++|++ ++ .+++++... .+..+.+-... .....+.+.......+.
T Consensus 267 ~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~v~ 346 (902)
T 2oaj_A 267 SSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMKNYYANPKQMKIFPLPTNVPIV 346 (902)
T ss_dssp CSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHHHHHHSCSEEEEECCSSSSCEE
T ss_pred CCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHCCCCCEEEEECCCCCCEE
T ss_conf 85556774579997349998878999688777788852899954789875554255654664174522787418999547
Q ss_pred EEECCCCC-CCC-CCCCCCEEEEEECCCCEEEEEECCCCCCCC-EEEEEEEECCCCCCEEEEEEEECCCCCEEEEECCCC
Q ss_conf 98506899-988-689996999992899799999717854651-135666404753416689997519992999981899
Q 000603 469 CMDLLSNE-PKY-PCGIDDWVALGDGKGNMTIVRVVGDVHTPQ-LSFTFTWSAGIERQLLGTYWCKSLGHRFIFTADPKG 545 (1398)
Q Consensus 469 ~l~~~~~~-~~~-s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~s~d~~~L~s~s~dg 545 (1398)
.+.+.... ..+ ...+...+++++.||.|++|++.++..... ........ .++..+.. +++++ .
T Consensus 347 ~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~~~l~-~~~~~v~~--~~~s~--------~--- 412 (902)
T 2oaj_A 347 NILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFPQNLS-WLRPLATT--SMAAS--------V--- 412 (902)
T ss_dssp EEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSCGGGT-TBTTBEEE--EEEEE--------E---
T ss_pred EEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCCCCCC-CCCCCEEE--EEEEE--------C---
T ss_conf 9999778898867787850699991798489997899985565556898522-35897248--99997--------4---
Q ss_pred CEEEEECCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEECCCCEEEEEECCCCCCCCCCCCCEEEE
Q ss_conf 39999568999864323676420211111113469818999953299889996178819999879743356454430110
Q 000603 546 RLKLWQLCDPFSSVCYESSKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCGDLRGNLVLFPLLRDLLNDKSVALHVEV 625 (1398)
Q Consensus 546 ~I~iWdi~~~~~~~~~~~~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatGs~dGtI~iwd~~~~~~~~~~~~~~~~l 625 (1398)
...+|+...... ...... ..+|...+.+++|+|++++||+|+.|++|++||+..+..... ... ..
T Consensus 413 ~~~~w~~~~~~~-----------~~~~~~-l~G~~~~v~sv~~spdg~~laSgs~DgtVrlWd~~~g~~~~~--~~~-~~ 477 (902)
T 2oaj_A 413 PNKLWLGALSAA-----------QNKDYL-LKGGVRTKRQKLPAEYGTAFITGHSNGSVRIYDASHGDIQDN--ASF-EV 477 (902)
T ss_dssp EHHHHHHHHHTT-----------BCCCCS-CCCSBCCCCCCCCCSEEEEEEEEETTSEEEEEESSCCTTTTT--BCE-EE
T ss_pred CHHHHHHHHHCC-----------CCCCCC-CCCCCCCCCCCCCCCCCCEEEEECCCCCEEEEECCCCCCCCC--CEE-EE
T ss_conf 999998888604-----------699975-457857787533366675899965898389997877645677--367-75
Q ss_pred CCCCEECCCCCCCCEEEEEEEEECCCCEEEEEECCCCCEEEEEEECCCCCEEEEEEEEEEEEEEEEEEECCCCCCCCCCC
Q ss_conf 56300013457644899999740898309999728963999999469961256521211001116757628894474553
Q 000603 626 SPLNYFKGAHGISTVSTLSVAKLRSNQTEIRSTGGDGCICYLEYDKDRESLEFIGMKQVKELSLIQSVSAENNSIDLASC 705 (1398)
Q Consensus 626 ~p~~~~~g~Hg~~~VtsI~~~~~~~~~~~l~S~g~DG~i~iw~i~~~~~~~~~~~~~~~~~~~~ie~~~~~~~~~~~~~~ 705 (1398)
.....+...|. ..|++|+|+ +++.+|++++.||.|++|++..+..... ..++...+. .+. +.
T Consensus 478 ~l~~~~~~~h~-~~V~svafs---pdg~~LAsgs~DgtV~lwd~~~~~~~~~-~~~~~~~~~-~~~---~~--------- 539 (902)
T 2oaj_A 478 NLSRTLNKAKE-LAVDKISFA---AETLELAVSIETGDVVLFKYEVNQFYSV-ENRPESGDL-EMN---FR--------- 539 (902)
T ss_dssp EHHHHTTCSSS-CCEEEEEEE---TTTTEEEEEETTSCEEEEEEEECCC--------------------CC---------
T ss_pred ECHHHCCCCCC-CCEEEEEEC---CCCCEEEEEECCCEEEEEEECCCCCCCC-CCCCCCCCC-CEE---EE---------
T ss_conf 01541377888-764699963---8999699994585799999248655575-455778665-113---45---------
Q ss_pred EEEEEECCCCEEEEECCCCEEEEEEECCCCCCCCCCCCCCCCCCCEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCCCC
Q ss_conf 17960126419999286631998752168554220002788998419999956689999975115767766644334787
Q 000603 706 NYAAGFASTDFIIWNLITEAKVVQIPCGGWRRPHSYFLGDVPEIKNCFAYVKDEVIHIHRHWISNGERKMFPKNLHMQFH 785 (1398)
Q Consensus 706 ~~v~Gf~s~~~~iWn~~~~~el~~i~CGG~hR~w~~~~~~~~~~~~~f~~~k~~~i~~~~~~~~~~~~~~~~~~l~~~~H 785 (1398)
.+ . + .. .......+..+. .+.. +.+ + .......+|
T Consensus 540 ----~~---~--~-~~-~~~~~~~~~~~~-----------~~~~-------~~g-~---------------~~~~~l~~h 574 (902)
T 2oaj_A 540 ----RF---S--L-NN-TNGVLVDVRDRA-----------PTGV-------RQG-F---------------MPSTAVHAN 574 (902)
T ss_dssp ----SC---C--G-GG-SSCSEEECGGGC-----------CTTC-------SEE-E---------------EEEEEECCC
T ss_pred ----EC---C--C-CC-CCCCCCCCCCCC-----------CCCC-------CCC-C---------------CEEEEEECC
T ss_conf ----51---3--4-67-965432242368-----------9887-------776-0---------------146999868
Q ss_pred CCEEEEEEEECCCCCCCCCCCCCCCCCCEEEEEEECCCEEEEEEECCCCCCCC--CCCCCC-CCCCCCCEEEEEEEEEEC
Q ss_conf 53065878631553245332223789972999922687199997608996421--001224-345754212466641000
Q 000603 786 GREIHTLCFVSENFQVGANVKKSALNKSSWIATGCEDGTVRLTRYSPGFENWS--SSKLLG-EHVGGSAVRSICFVSEIN 862 (1398)
Q Consensus 786 greI~sv~~~~~~~~~~~~~~~~~~~~~~~iaTGseD~tIri~~~~~~~~~~~--~~~~l~-~H~~gsaV~~i~f~~~~~ 862 (1398)
...|++|+|+|+ + +||+|++|++|+||.+....- +. ....+. +|. ..|++++|.-..
T Consensus 575 ~~~V~svafSpd---------------G-~lAsgs~D~tv~lwd~~~~~~-~~~~~~~~~~~gh~--~~V~sv~Fs~~~- 634 (902)
T 2oaj_A 575 KGKTSAINNSNI---------------G-FVGIAYAAGSLMLIDRRGPAI-IYMENIREISGAQS--ACVTCIEFVIME- 634 (902)
T ss_dssp SCSEEEEEECBT---------------S-EEEEEETTSEEEEEETTTTEE-EEEEEGGGTCSSCC--CCEEEEEEEEEE-
T ss_pred CCCEEEEEECCC---------------C-EEEEEECCCCEEEEECCCCEE-EEEEEHHHHCCCCC--CCEEEEEEEEEE-
T ss_conf 886779996487---------------6-899995897699998889839-99702467264666--613999999984-
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCEEEEEEEEEC
Q ss_conf 1233335786432234553346899789999534424899999733
Q 000603 863 QISAVVDNVSEEINRQNGVAEDKENPFLLISVGAKRVLTSWLLRHR 908 (1398)
Q Consensus 863 ~~~~~~~~~~~~~~~d~~~~~~~~~~~ll~S~g~d~~i~iW~~~~~ 908 (1398)
..||+ .++.+|+|++.|+.|++|++...
T Consensus 635 -------~~~Dg-----------~~~~~l~sgs~D~tv~~wd~~p~ 662 (902)
T 2oaj_A 635 -------YGDDG-----------YSSILMVCGTDMGEVITYKILPA 662 (902)
T ss_dssp -------CTTSS-----------SEEEEEEEEETTSEEEEEEEEEC
T ss_pred -------CCCCC-----------CCCEEEEEEECCCCEEEEEEECC
T ss_conf -------17898-----------76338999956873999999558
No 10
>2oaj_A Protein SNI1; WD40 repeat, beta propeller, endocytosis/exocytosis complex; 2.40A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=380.20 Aligned_cols=524 Identities=10% Similarity=0.025 Sum_probs=344.8
Q ss_pred EEEEECCCCEECCCEEEEEEEECCCCCCCCCEEEEEE-CCCEEEEECCCCEEEEEEEEEECCCEEEEEEECCCCCCCCCC
Q ss_conf 9999578670036349999972189889988999980-891999988999388799866083489999710346458987
Q 000603 6 LSEWRLDVGQYLGEISALCFVHLPSHLSSLPFLLAGS-GSQVLLYDLEAGTLIRPFQVFHGIRLHGISCNFINCTEGSVS 84 (1398)
Q Consensus 6 v~iWdl~~~~h~~~Vtaiafs~~pd~~~~g~lLaaG~-dg~I~Iwd~~tg~~i~~~~~~~~~~V~~i~fs~~~~~~~pdg 84 (1398)
..+.+.....|.+.|++++|+ |+ +++||+|+ |++|+||+..+.+.+..+. + ...|.+++|+ | +
T Consensus 6 ~~~~~~~~~gh~~~V~~lafs--pd----g~~lAsgs~Dg~I~lw~~~~~~~~~~~~-~-~~~V~~l~fs-------p-g 69 (902)
T 2oaj_A 6 FSLAETNKYGMSSKPIAAAFD--FT----QNLLAIATVTGEVHIYGQQQVEVVIKLE-D-RSAIKEMRFV-------K-G 69 (902)
T ss_dssp EEEEEEEEEECSSCEEEEEEE--TT----TTEEEEEETTSEEEEECSTTCEEEEECS-S-CCCEEEEEEE-------T-T
T ss_pred EEECCCCCCCCCCCCEEEEEC--CC----CCEEEEEECCCEEEEEECCCCEEEEECC-C-CCCEEEEEEC-------C-C
T ss_conf 202120216889984899997--99----9989999297989999689947999868-9-9977999990-------8-9
Q ss_pred CCCEEEEEE-ECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCEEEEEEEEECCCCCEEEEEECCCEEEEEE
Q ss_conf 521009999-9499699999147889999888863211115553146887689999984138994999998899099999
Q 000603 85 TRVTFEVAL-FGEKRVKLFELNFELSPNSQYQPETCVNLSLVQSLPRLSHWVFDVCFLKVCNGNRSLAIGCSDNSIRVWD 163 (1398)
Q Consensus 85 ~~~~~~la~-~gd~~I~iwdl~~~~~~~~~~~~~~~~~~~~~~~l~gh~~~V~~v~fsp~~~dg~~Latgs~Dg~I~iWd 163 (1398)
.+|++ ..|++|++||+.+ .+++..+. |.+.|++++|+| ++.+|++|+.|++|++||
T Consensus 70 ----~~L~S~s~D~~v~lWd~~~---------------~~~~~~~~-~~~~V~~v~~sp---~g~~l~sgs~dg~V~lwd 126 (902)
T 2oaj_A 70 ----IYLVVINAKDTVYVLSLYS---------------QKVLTTVF-VPGKITSIDTDA---SLDWMLIGLQNGSMIVYD 126 (902)
T ss_dssp ----TEEEEEETTCEEEEEETTT---------------CSEEEEEE-CSSCEEEEECCT---TCSEEEEEETTSCEEEEE
T ss_pred ----CEEEEEECCCEEEEEECCC---------------CCEEEEEC-CCCCEEEEEECC---CCCEEEEECCCCCEEEEE
T ss_conf ----8899998959599998999---------------96899974-899879999879---999899994999299999
Q ss_pred CCCCEEE-EEE---------CCCCCCEEEEEEEECCCCCCCEEEEEECCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 5799199-998---------348863189998623798885999997999099999246876666899998777898887
Q 000603 164 ISNSSII-LEV---------HSPERCLLYSMKLWGDNLEALRIASGTIYNEIIVWKVDWEHVAPLLNSPEGNHAHGSSSD 233 (1398)
Q Consensus 164 l~~~~~~-~~l---------~~~~~~~~~sv~~~~~s~d~~~iasgs~dg~I~iWd~~~~~~~~~~~~~~~~s~~~~~~~ 233 (1398)
+.++... ..+ ...+...+.+++|.+. +...+++|+.|+.| +||+.
T Consensus 127 ~~~~~~~~~~i~~~~~~~~~~~~h~~~V~sl~~sp~--~~~~l~~g~~dg~v-lWd~~---------------------- 181 (902)
T 2oaj_A 127 IDRDQLSSFKLDNLQKSSFFPAARLSPIVSIQWNPR--DIGTVLISYEYVTL-TYSLV---------------------- 181 (902)
T ss_dssp TTTTEEEEEEECCHHHHHTCSSSCCCCCCEEEEETT--EEEEEEEECSSCEE-EEETT----------------------
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCEEEEEECCC--CCCEEEEEECCCCE-EEECC----------------------
T ss_conf 999962650304321000254457897389997669--99989999189849-99877----------------------
Q ss_pred CCEEEECCCCCCEEEEEEEEC------------------CCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCCCCCCC
Q ss_conf 620253135664057999927------------------66888999994899999999789909999957894138887
Q 000603 234 FKCFKLQDQQHTAVNLFRLVG------------------HEGSIFRIEWSSCGSKLVSVSDDRSARIWEVRAEYWKDSDS 295 (1398)
Q Consensus 234 ~~~i~i~~~~~~~~~i~~l~g------------------H~~~I~~iafspdg~~LvS~s~Dg~I~iWd~~~~~~~~~~~ 295 (1398)
..+.+..+.+ |...|.+++|+|++.+|++++.|++|++||+.+++.
T Consensus 182 -----------~~~~~~~~~~~~~~g~~~~~~~~~~~~~h~~~V~~v~fspdg~~lasgs~Dg~i~lWd~~~g~~----- 245 (902)
T 2oaj_A 182 -----------ENEIKQSFIYELPPFAPGGDFSEKTNEKRTPKVIQSLYHPNSLHIITIHEDNSLVFWDANSGHM----- 245 (902)
T ss_dssp -----------TTEEEEEECCCBCTTCCCSTTCCCTTSCBCCCEEEEEECTTSSEEEEEETTCCEEEEETTTCCE-----
T ss_pred -----------CCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCEEEEEECCCCCEEEEEECCCEEEEEECCCCCE-----
T ss_conf -----------8965799833557767776544332345677768999859999999998999399998789968-----
Q ss_pred CEEEEEEEEE-------------CCCCCEEEEEEC----C---CEEEEEECC-----CCEEEECC---------------
Q ss_conf 0376304874-------------088447999991----9---989999589-----92999938---------------
Q 000603 296 IEEVGSSVLY-------------GHNARVWDCCLT----D---SFIITAGED-----CTCRVWGS--------------- 335 (1398)
Q Consensus 296 ~~~i~~~~~~-------------gh~~~V~~i~~s----~---~~lvsgs~D-----g~i~iWd~--------------- 335 (1398)
+......... .|...|.+++|+ + .++++++.| ..+.+|++
T Consensus 246 ~~~r~l~~~~~~~~~~~~~~~~~~~~~~V~~v~w~~~~~pd~~~ll~sg~~~~~~~~~~v~~~~~~~~~~~~~~s~~~~~ 325 (902)
T 2oaj_A 246 IMARTVFETEINVPQPDYIRDSSTNAAKISKVYWMCENNPEYTSLLISHKSISRGDNQSLTMIDLGYTPRYSITSYEGMK 325 (902)
T ss_dssp EEEECSSCSCTTSCCTTCCCCCSSCCCEEEEEEEEECSSTTEEEEEEEEECSTTSSCCCEEEEEEEECCCGGGCCHHHHH
T ss_pred EEEEEECCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCCCCCCEEEEECCCCCCCCCCEEEEEECCCCCCCCCCCHHHHH
T ss_conf 88885012345787776788885556774579997349998878999688777788852899954789875554255654
Q ss_pred ----CCCEEEEEE-CCCCCCEEEEEECC----------CCCEEEEEECCCCEEEEECC-CCCC-CCCCCCCCCCCCCCCC
Q ss_conf ----994689992-02486579999948----------99999999828939999959-8875-5324787641016873
Q 000603 336 ----DGKQLKMIK-EHIGRGIWRCLYDS----------LSSLLVTAGFDSAIKVHQFQ-AFLP-GSLESHPEAKEFNGRT 398 (1398)
Q Consensus 336 ----~g~~l~~l~-~h~~~~V~si~~sp----------dg~~lvtgg~Dg~I~iwdl~-~~~l-~~l~~~~~~v~~~~~~ 398 (1398)
..+....+. .+.+ .|..+.+.+ +...+++++.|+.+++|++. +... .....+
T Consensus 326 ~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~sp~~~g~~d~~~l~~~s~dg~l~~~~~~~g~~~~~~~~~~---------- 394 (902)
T 2oaj_A 326 NYYANPKQMKIFPLPTNV-PIVNILPIPRQSPYFAGCHNPGLILLILGNGEIETMLYPSGIFTDKASLFP---------- 394 (902)
T ss_dssp HHHHSCSEEEEECCSSSS-CEEEEEECCSSCSHHHHTBSCSEEEEEETTSCEEEEETTTCCEECCGGGSC----------
T ss_pred HHHCCCCCEEEEECCCCC-CEEEEEECCCCCCCCCCCCCCEEEEEECCCCCEEEEECCCCCCCCCCCCCC----------
T ss_conf 664174522787418999-547999977889886778785069999179848999789998556555689----------
Q ss_pred CEEEEEECCCCCCEEECCCCCCCEEEEEEECCCEEEEEECCCCEEEEEEECC-----CCCEEEEEEEECCCCCEEEEECC
Q ss_conf 0799652797542341167897479999911990999990893899995038-----88504897852489639998506
Q 000603 399 EIFSIKIPNFSEQIRLTDSKSEYVRCLHLTSEDTLYIATNHGYLYHTKLCDM-----DSVNWNKILQVSEGMPIICMDLL 473 (1398)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~~~~~~V~~iafs~dg~llv~t~~g~i~~~~l~~~-----~~~~w~~i~~~~~~~~i~~l~~~ 473 (1398)
..+..+...|++++|++.... +|+. ....| .+.++.. .+..+
T Consensus 395 --------------~~l~~~~~~v~~~~~s~~~~~-------------~w~~~~~~~~~~~~--~l~G~~~-~v~sv--- 441 (902)
T 2oaj_A 395 --------------QNLSWLRPLATTSMAASVPNK-------------LWLGALSAAQNKDY--LLKGGVR-TKRQK--- 441 (902)
T ss_dssp --------------GGGTTBTTBEEEEEEEEEEHH-------------HHHHHHHTTBCCCC--SCCCSBC-CCCCC---
T ss_pred --------------CCCCCCCCCEEEEEEEECCHH-------------HHHHHHHCCCCCCC--CCCCCCC-CCCCC---
T ss_conf --------------852235897248999974999-------------99888860469997--5457857-78753---
Q ss_pred CCCCCCCCCCCCEEEEEECCCCEEEEEECCCCCCCCEEEEEEEE----CCCCCCEEEEEEEECCCCCEEEEECCCCCEEE
Q ss_conf 89998868999699999289979999971785465113566640----47534166899975199929999818993999
Q 000603 474 SNEPKYPCGIDDWVALGDGKGNMTIVRVVGDVHTPQLSFTFTWS----AGIERQLLGTYWCKSLGHRFIFTADPKGRLKL 549 (1398)
Q Consensus 474 ~~~~~~s~~~~~~la~gs~dG~I~Iwdl~~~~~~~~~~~~~~~~----~~~~~~~l~~~~~~s~d~~~L~s~s~dg~I~i 549 (1398)
.+ .++++++++|+.|+.|++|++.++.......+..... ..+...+. .++|+|++++|++++.|+.|++
T Consensus 442 ----~~-spdg~~laSgs~DgtVrlWd~~~g~~~~~~~~~~~l~~~~~~~h~~~V~--svafspdg~~LAsgs~DgtV~l 514 (902)
T 2oaj_A 442 ----LP-AEYGTAFITGHSNGSVRIYDASHGDIQDNASFEVNLSRTLNKAKELAVD--KISFAAETLELAVSIETGDVVL 514 (902)
T ss_dssp ----CC-CSEEEEEEEEETTSEEEEEESSCCTTTTTBCEEEEHHHHTTCSSSCCEE--EEEEETTTTEEEEEETTSCEEE
T ss_pred ----CC-CCCCCEEEEECCCCCEEEEECCCCCCCCCCEEEEECHHHCCCCCCCCEE--EEEECCCCCEEEEEECCCEEEE
T ss_conf ----33-6667589996589838999787764567736775015413778887646--9996389996999945857999
Q ss_pred EECCCCCCCCC----------CCC---------------------CCCCEEEEEEEECCCCCCCEEEEEEECCCCEEEEE
Q ss_conf 95689998643----------236---------------------76420211111113469818999953299889996
Q 000603 550 WQLCDPFSSVC----------YES---------------------SKTNNVFLVAEFSSCFGARIMCLDASFEDEVLFCG 598 (1398)
Q Consensus 550 Wdi~~~~~~~~----------~~~---------------------~~~~~l~l~~~~~~~h~~~Itsl~~Spdg~lLatG 598 (1398)
|++........ +.. .....+.+... ..+|...|++++||||| +||+|
T Consensus 515 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~-l~~h~~~V~svafSpdG-~lAsg 592 (902)
T 2oaj_A 515 FKYEVNQFYSVENRPESGDLEMNFRRFSLNNTNGVLVDVRDRAPTGVRQGFMPSTA-VHANKGKTSAINNSNIG-FVGIA 592 (902)
T ss_dssp EEEEECCC---------------CCSCCGGGSSCSEEECGGGCCTTCSEEEEEEEE-ECCCSCSEEEEEECBTS-EEEEE
T ss_pred EEECCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCEEEE-EECCCCCEEEEEECCCC-EEEEE
T ss_conf 99248655575455778665113455134679654322423689887776014699-98688867799964876-89999
Q ss_pred CCCCEEEEEECCCCCCCCCCCCCEEEECCCCEECCCCCCCCEEEEEEE-----EECCCCEEEEEECCCCCEEEEEEEC
Q ss_conf 178819999879743356454430110563000134576448999997-----4089830999972896399999946
Q 000603 599 DLRGNLVLFPLLRDLLNDKSVALHVEVSPLNYFKGAHGISTVSTLSVA-----KLRSNQTEIRSTGGDGCICYLEYDK 671 (1398)
Q Consensus 599 s~dGtI~iwd~~~~~~~~~~~~~~~~l~p~~~~~g~Hg~~~VtsI~~~-----~~~~~~~~l~S~g~DG~i~iw~i~~ 671 (1398)
+.|++|++||+..... ..+ ..+..+...|. ..|++|+|+ +.++++..|++++.||+|++|++..
T Consensus 593 s~D~tv~lwd~~~~~~-------~~~-~~~~~~~~gh~-~~V~sv~Fs~~~~~~Dg~~~~~l~sgs~D~tv~~wd~~p 661 (902)
T 2oaj_A 593 YAAGSLMLIDRRGPAI-------IYM-ENIREISGAQS-ACVTCIEFVIMEYGDDGYSSILMVCGTDMGEVITYKILP 661 (902)
T ss_dssp ETTSEEEEEETTTTEE-------EEE-EEGGGTCSSCC-CCEEEEEEEEEECTTSSSEEEEEEEEETTSEEEEEEEEE
T ss_pred ECCCCEEEEECCCCEE-------EEE-EEHHHHCCCCC-CCEEEEEEEEEECCCCCCCCEEEEEEECCCCEEEEEEEC
T ss_conf 5897699998889839-------997-02467264666-613999999984178987633899995687399999955
Done!