BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000604
(1398 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IYG|G Chain G, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 100 bits (250), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 76/313 (24%), Positives = 150/313 (47%), Gaps = 26/313 (8%)
Query: 58 WLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK 117
W + IA A V+ + + +D Y +V+ I G +S ++GV+ K++ H
Sbjct: 156 WSSLACNIALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHP 215
Query: 118 RMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQQENDHLKMVISKIEALR 170
RM +NPR+++L +LEY++ +Q F +LQ +E ++++ + I L+
Sbjct: 216 RMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQMEE-EYIQQLCEDIIQLK 274
Query: 171 PNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGH- 229
P+V++ EK +S AQ L+ I+ + V++ RIAR GA I + + +G
Sbjct: 275 PDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSRPEELREEDVGTG 334
Query: 230 CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 289
L +++K+ +E+ T + C C +LLRG +E L +V+ +Q
Sbjct: 335 AGLLEIKKIGDEYFT-------------FITECKDPKACTILLRGASKEILSEVERNLQD 381
Query: 290 AVFAAYHLSLETSFLADEGATLPKMRLKHSISKPERMMADNAISAIPSSKVAANYQEVAD 349
A+ ++ L+ + GA+ +M + H++++ + M + P VA + +
Sbjct: 382 AMQVCRNVLLDPQLVPGGGAS--EMAVAHALTEKSKAM--TGVEQWPYRAVAQALEVIPR 437
Query: 350 DSTRDDGSVSLRL 362
++ G+ ++RL
Sbjct: 438 TLIQNCGASTIRL 450
>pdb|3P9D|C Chain C, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|K Chain K, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|CC Chain c, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|KK Chain k, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|C Chain C, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|K Chain K, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|CC Chain c, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|KK Chain k, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 590
Score = 91.7 bits (226), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 55/168 (32%), Positives = 98/168 (58%), Gaps = 9/168 (5%)
Query: 83 MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN 142
+D YV+V+ I G +S +KGV+ K++ H +M+ NPR+++L LEY++ +
Sbjct: 198 IDIKRYVRVEKIPGGDVLDSRVLKGVLLNKDVVHPKMSRHIENPRVVLLDCPLEYKKGES 257
Query: 143 QL-------ASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 195
Q +N +LQ +E + ++++ +I A+RP +++ EK VS AQ LL S+
Sbjct: 258 QTNIEIEKEEDWNRILQIEE-EQVQLMCEQILAVRPTLVITEKGVSDLAQHYLLKGGCSV 316
Query: 196 VLNVKRPLLERIARCTGALITPSIDNISTTRLG-HCELFKLEKVSEEH 242
+ VK+ RIAR TGA I ++++ + +G +C LFK+E + +E+
Sbjct: 317 LRRVKKSDNNRIARVTGATIVNRVEDLKESDVGTNCGLFKVEMIGDEY 364
>pdb|1Q3R|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
pdb|1Q3R|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form Of Single Mutant)
Length = 548
Score = 84.0 bits (206), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 196
P+QL SF +QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF----LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAV 313
Query: 197 LNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTL 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ +
Sbjct: 314 RRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------M 360
Query: 257 MYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 312
++ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 361 IFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|1Q3S|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|E Chain E, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|F Chain F, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|G Chain G, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
pdb|1Q3S|H Chain H, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Formiii Crystal Complexed With Adp)
Length = 548
Score = 83.6 bits (205), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 196
P+QL SF +QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF----LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAV 313
Query: 197 LNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTL 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ +
Sbjct: 314 RRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------M 360
Query: 257 MYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 312
++ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 361 IFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|1Q2V|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q2V|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Nucleotide-Free Form)
pdb|1Q3Q|A Chain A, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|B Chain B, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|C Chain C, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
pdb|1Q3Q|D Chain D, Crystal Structure Of The Chaperonin From Thermococcus
Strain Ks-1 (Two-Point Mutant Complexed With Amp-Pnp)
Length = 548
Score = 83.2 bits (204), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 61/236 (25%), Positives = 109/236 (46%), Gaps = 34/236 (14%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +K + A ES ++GVV K + H RM + N ++ ++ ALE ++
Sbjct: 198 DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDAKI 257
Query: 141 ----PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 196
P+QL SF +QE LK ++ I NV+ V+K + AQ L I V
Sbjct: 258 NITSPDQLMSF----LEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAV 313
Query: 197 LNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTL 256
VK+ +E++A+ TGA I ++ +++ LG+ E+ + K++ E+ +
Sbjct: 314 RRVKKSDMEKLAKATGAKIVTNVKDLTPEDLGYAEVVEERKLAGEN-------------M 360
Query: 257 MYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 312
++ EGC +L+RG + +V+ ++ AV + ++GA LP
Sbjct: 361 IFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM-------EDGAVLP 409
>pdb|3KO1|A Chain A, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|B Chain B, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|C Chain C, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|D Chain D, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|E Chain E, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|F Chain F, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|G Chain G, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|H Chain H, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
pdb|3KO1|I Chain I, Cystal Structure Of Thermosome From Acidianus
Tengchongensis Strain S5
Length = 553
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 53/190 (27%), Positives = 89/190 (46%), Gaps = 14/190 (7%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV------ 140
D +++ A GS N++ + G+V K + H M + N ++ ++ +LE ++
Sbjct: 205 DNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDAEI 264
Query: 141 ----PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 196
P Q+ F L ++EN +K + KI A NV++ +K + AQ L K + V
Sbjct: 265 RINDPTQMQKF---LDEEEN-LIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAV 320
Query: 197 LNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTL 256
K+ LE++AR TG + +ID IS LG+ L + KV E+ + K P
Sbjct: 321 RRAKKSDLEKLARATGGRVVSNIDEISEQDLGYASLIEERKVGEDKMVFVEGAKNPKSIS 380
Query: 257 MYFEGCPRRL 266
+ G RL
Sbjct: 381 ILIRGGLERL 390
>pdb|1A6D|A Chain A, Thermosome From T. Acidophilum
pdb|1A6E|A Chain A, Thermosome-Mg-Adp-Alf3 Complex
Length = 545
Score = 79.0 bits (193), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 107/239 (44%), Gaps = 27/239 (11%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV-------- 140
+KV GS N++ FI G+V K H +M +N ++ ++ ALE ++
Sbjct: 197 IKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQI 256
Query: 141 --PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN 198
P+++ F QE + K ++ KI+ NV+L +K + AQ L + I V
Sbjct: 257 SDPSKIQDF----LNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRR 312
Query: 199 VKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMY 258
VK+ +E++A+ TGA I +D+++ + LG E + K+ ++ T +
Sbjct: 313 VKKSDMEKLAKATGAKIVTDLDDLTPSVLGEAETVEERKIGDDRMT-------------F 359
Query: 259 FEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLK 317
GC +L+RG + +V+ + A+ + FL GA ++ ++
Sbjct: 360 VMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKEDGKFLWGGGAVEAELAMR 418
>pdb|2GK9|A Chain A, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|B Chain B, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|C Chain C, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
pdb|2GK9|D Chain D, Human Phosphatidylinositol-4-Phosphate 5-Kinase, Type Ii,
Gamma
Length = 392
Score = 78.6 bits (192), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 58/203 (28%), Positives = 99/203 (48%), Gaps = 16/203 (7%)
Query: 1128 FSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVK 1187
F Y + F +LR + D++ SL+R+ ++G S+ F S D +IK+V
Sbjct: 69 FKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSESEG--SDGRFLISYDRTLVIKEVS 126
Query: 1188 KTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENL 1247
++ Y +Y+ + T L + LG+Y+VSV + ++VM N+
Sbjct: 127 SEDIADMHSNLSNYHQYI---VKCHGNTLLPQFLGMYRVSVDNEDSY------MLVMRNM 177
Query: 1248 FFRR-SISRVYDLKGSARSRYNTDTTGTNKV--LLDMNLLENLRTEPLFLGSKAKRSLER 1304
F R + R YDLKGS SR +D ++ L DM+ L + + +++G + K+
Sbjct: 178 FSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDFLN--KNQKVYIGEEEKKIFLE 235
Query: 1305 AIWNDTSFLASVDVMDYSLLVGV 1327
+ D FL + +MDYSLL+G+
Sbjct: 236 KLKRDVEFLVQLKIMDYSLLLGI 258
>pdb|2YBX|A Chain A, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
pdb|2YBX|B Chain B, Crystal Structure Of Human Phosphatidylinositol-5-Phosphate
4-Kinase Type-2 Alpha
Length = 394
Score = 75.9 bits (185), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 60/209 (28%), Positives = 100/209 (47%), Gaps = 16/209 (7%)
Query: 1128 FSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQG-GKSNVFFAKSLDERFIIKQV 1186
F Y F +LR++ DF SL+RS +S F S D+R+IIK +
Sbjct: 77 FKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTI 136
Query: 1187 KKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMEN 1246
++ +Y +Y+ + T L + LG+Y+++V ++ I ++V N
Sbjct: 137 TSEDVAEMHNILKKYHQYIVEC---HGITLLPQFLGMYRLNVDGVE------IYVIVTRN 187
Query: 1247 LFFRR-SISRVYDLKGSARSRYNTDTTGTNKV--LLDMNLLENLRTEPLFLGSKAKRSLE 1303
+F R S+ R YDLKGS +R +D ++ L D + + + +++ K+
Sbjct: 188 VFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDNDFIN--EGQKIYIDDNNKKVFL 245
Query: 1304 RAIWNDTSFLASVDVMDYSLLVGV-DEER 1331
+ D FLA + +MDYSLLVG+ D ER
Sbjct: 246 EKLKKDVEFLAQLKLMDYSLLVGIHDVER 274
>pdb|1BO1|A Chain A, Phosphatidylinositol Phosphate Kinase Type Ii Beta
pdb|1BO1|B Chain B, Phosphatidylinositol Phosphate Kinase Type Ii Beta
Length = 416
Score = 75.9 bits (185), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/207 (27%), Positives = 102/207 (49%), Gaps = 15/207 (7%)
Query: 1127 KFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQG-GKSNVFFAKSLDERFIIKQ 1185
+F Y F +LR++ D+ S++RS ++ G+ F + D RF+IK
Sbjct: 92 RFKFKEYCPMVFRNLRERFGIDDQDYQNSVTRSAPINSDSQGRCGTRFLTTYDRRFVIKT 151
Query: 1186 VKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVME 1245
V ++ +Y +++ + + T L + LG+Y+++V G ET ++V
Sbjct: 152 VSSEDVAEMHNILKKYHQFIVECHGN---TLLPQFLGMYRLTVD----GVETY--MVVTR 202
Query: 1246 NLFFRR-SISRVYDLKGSARSRYNTDTTGTNKV--LLDMNLLENLRTEPLFLGSKAKRSL 1302
N+F R ++ R YDLKGS +R +D + D + L + L +G ++K++
Sbjct: 203 NVFSHRLTVHRKYDLKGSTVAREASDKEKAKDLPTFKDNDFLN--EGQKLHVGEESKKNF 260
Query: 1303 ERAIWNDTSFLASVDVMDYSLLVGVDE 1329
+ D FLA + +MDYSLLVG+ +
Sbjct: 261 LEKLKRDVEFLAQLKIMDYSLLVGIHD 287
>pdb|1GML|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GML|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Triclinic)
pdb|1GN1|A Chain A, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|B Chain B, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|C Chain C, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|D Chain D, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|E Chain E, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|F Chain F, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|G Chain G, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
pdb|1GN1|H Chain H, Crystal Structure Of The Mouse Cct Gamma Apical Domain
(Monoclinic)
Length = 178
Score = 75.1 bits (183), Expect = 2e-13, Method: Composition-based stats.
Identities = 48/182 (26%), Positives = 90/182 (49%), Gaps = 22/182 (12%)
Query: 101 ESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL-------ASFNTLLQQ 153
+S ++GV+ K++ H RM +NPR+++L +LEY++ +Q F +LQ
Sbjct: 3 DSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQTDIEITREEDFTRILQM 62
Query: 154 QENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 213
+E +++ + I L+P+V++ EK +S AQ L+ ++ + V++ RIAR GA
Sbjct: 63 EE-EYIHQLCEDIIQLKPDVVITEKGISDLAQHYLMRANVTAIRRVRKTDNNRIARACGA 121
Query: 214 LITPSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLL 272
I + + +G L +++K+ +E+ T + C C +LL
Sbjct: 122 RIVSRPEELREDDVGTGAGLLEIKKIGDEYFT-------------FITDCKDPKACTILL 168
Query: 273 RG 274
RG
Sbjct: 169 RG 170
>pdb|1A6D|B Chain B, Thermosome From T. Acidophilum
pdb|1A6E|B Chain B, Thermosome-Mg-Adp-Alf3 Complex
Length = 543
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 51/202 (25%), Positives = 97/202 (48%), Gaps = 29/202 (14%)
Query: 87 DYVKVKCIAK--GSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV---- 140
D+ ++ + K G+ +++ I G++ K H M ++ ++ +L LE ++
Sbjct: 194 DFDNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253
Query: 141 ------PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 194
P+ + F L Q+EN L+ ++ KI+++ NV++ +K + AQ L I
Sbjct: 254 NLRIEDPSMIQKF---LAQEEN-MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIY 309
Query: 195 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSK 254
V VK+ ++++A+ TGA I +ID IS++ LG E + KV E++ T
Sbjct: 310 AVRRVKKSDMDKLAKATGASIVSTIDEISSSDLGTAERVEQVKVGEDYMT---------- 359
Query: 255 TLMYFEGCPRRLGCMVLLRGKC 276
+ GC +L+RG+
Sbjct: 360 ---FVTGCKNPKAVSILVRGET 378
>pdb|3IZH|A Chain A, Mm-Cpn D386a With Atp
pdb|3IZH|B Chain B, Mm-Cpn D386a With Atp
pdb|3IZH|C Chain C, Mm-Cpn D386a With Atp
pdb|3IZH|D Chain D, Mm-Cpn D386a With Atp
pdb|3IZH|E Chain E, Mm-Cpn D386a With Atp
pdb|3IZH|F Chain F, Mm-Cpn D386a With Atp
pdb|3IZH|G Chain G, Mm-Cpn D386a With Atp
pdb|3IZH|H Chain H, Mm-Cpn D386a With Atp
pdb|3IZH|I Chain I, Mm-Cpn D386a With Atp
pdb|3IZH|J Chain J, Mm-Cpn D386a With Atp
pdb|3IZH|K Chain K, Mm-Cpn D386a With Atp
pdb|3IZH|L Chain L, Mm-Cpn D386a With Atp
pdb|3IZH|M Chain M, Mm-Cpn D386a With Atp
pdb|3IZH|N Chain N, Mm-Cpn D386a With Atp
pdb|3IZH|O Chain O, Mm-Cpn D386a With Atp
pdb|3IZH|P Chain P, Mm-Cpn D386a With Atp
pdb|3IZM|A Chain A, Mm-Cpn Wildtype With Atp
pdb|3IZM|B Chain B, Mm-Cpn Wildtype With Atp
pdb|3IZM|C Chain C, Mm-Cpn Wildtype With Atp
pdb|3IZM|D Chain D, Mm-Cpn Wildtype With Atp
pdb|3IZM|E Chain E, Mm-Cpn Wildtype With Atp
pdb|3IZM|F Chain F, Mm-Cpn Wildtype With Atp
pdb|3IZM|G Chain G, Mm-Cpn Wildtype With Atp
pdb|3IZM|H Chain H, Mm-Cpn Wildtype With Atp
pdb|3IZM|I Chain I, Mm-Cpn Wildtype With Atp
pdb|3IZM|J Chain J, Mm-Cpn Wildtype With Atp
pdb|3IZM|K Chain K, Mm-Cpn Wildtype With Atp
pdb|3IZM|L Chain L, Mm-Cpn Wildtype With Atp
pdb|3IZM|M Chain M, Mm-Cpn Wildtype With Atp
pdb|3IZM|N Chain N, Mm-Cpn Wildtype With Atp
pdb|3IZM|O Chain O, Mm-Cpn Wildtype With Atp
pdb|3IZM|P Chain P, Mm-Cpn Wildtype With Atp
Length = 513
Score = 65.9 bits (159), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 42/287 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRV----------PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYA 184
+E + P +L F +QE LK ++++I+A NVL +K + A
Sbjct: 233 IEIKETETDAEIRITDPAKLMEF----IEQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 288
Query: 185 QDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 244
Q L + I VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 289 QHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS----- 343
Query: 245 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 344 --------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|3AQ1|B Chain B, Open State Monomer Of A Group Ii Chaperonin From
Methanococcoides Burtonii
Length = 500
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 54/213 (25%), Positives = 90/213 (42%), Gaps = 27/213 (12%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV-------- 140
+K++ A GS ++S I G+V K H M + N ++L+L +E+++
Sbjct: 151 IKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDSEIKI 210
Query: 141 --PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN 198
P Q+ F QE ++ + K+ A NV+ +K + AQ + I V
Sbjct: 211 TSPGQMQLF----LDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRR 266
Query: 199 VKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMY 258
VK+ L+R+++ TGA I +D I+T +G L EE E + Y
Sbjct: 267 VKKSDLKRLSKVTGATIIQDLDQITTEDVGTAGLV------EEKEVRG-------GKMTY 313
Query: 259 FEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
GC VLL G + + H + A+
Sbjct: 314 VTGCQNSKAVTVLLHGGTEHVVDSLDHALNDAL 346
>pdb|3LOS|A Chain A, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|B Chain B, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|C Chain C, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|D Chain D, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|E Chain E, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|F Chain F, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|G Chain G, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|H Chain H, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|I Chain I, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|J Chain J, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|K Chain K, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|L Chain L, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|M Chain M, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|N Chain N, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|O Chain O, Atomic Model Of Mm-Cpn In The Closed State
pdb|3LOS|P Chain P, Atomic Model Of Mm-Cpn In The Closed State
pdb|3KFB|A Chain A, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|B Chain B, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|C Chain C, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|D Chain D, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|E Chain E, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|F Chain F, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|G Chain G, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFB|H Chain H, Crystal Structure Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3RUQ|A Chain A, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|B Chain B, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|C Chain C, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUQ|D Chain D, Crystal Structure Of Cpn-Wt In Complex With Adp From
Methanococcus Maripaludis
Length = 543
Score = 65.5 bits (158), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 125/287 (43%), Gaps = 42/287 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238
Query: 135 LEYQRV----------PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYA 184
+E + P +L F +QE LK ++++I+A NVL +K + A
Sbjct: 239 IEIKETETDAEIRITDPAKLMEFI----EQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 294
Query: 185 QDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 244
Q L + I VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 295 QHYLAKEGIVAARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS----- 349
Query: 245 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 350 --------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|3RUS|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUS|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp From
Methanococcus Maripaludis
pdb|3RUV|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUV|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Atp Analogue
From Methanococcus Maripaludis
pdb|3RUW|A Chain A, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|B Chain B, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|C Chain C, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
pdb|3RUW|D Chain D, Crystal Structure Of Cpn-Rls In Complex With Adp-Alfx From
Methanococcus Maripaludis
Length = 543
Score = 64.7 bits (156), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 42/287 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 238
Query: 135 LEYQRV----------PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYA 184
+E + P +L F +QE LK ++++I+A NVL +K + A
Sbjct: 239 IEIKETETDAEIRITDPAKLMEFI----EQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 294
Query: 185 QDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 244
Q L + I VK+ +E++A+ TGA + +I +S LG L + K+S
Sbjct: 295 QHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS----- 349
Query: 245 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 350 --------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 388
>pdb|3IZI|A Chain A, Mm-Cpn Rls With Atp
pdb|3IZI|B Chain B, Mm-Cpn Rls With Atp
pdb|3IZI|C Chain C, Mm-Cpn Rls With Atp
pdb|3IZI|D Chain D, Mm-Cpn Rls With Atp
pdb|3IZI|E Chain E, Mm-Cpn Rls With Atp
pdb|3IZI|F Chain F, Mm-Cpn Rls With Atp
pdb|3IZI|G Chain G, Mm-Cpn Rls With Atp
pdb|3IZI|H Chain H, Mm-Cpn Rls With Atp
pdb|3IZI|I Chain I, Mm-Cpn Rls With Atp
pdb|3IZI|J Chain J, Mm-Cpn Rls With Atp
pdb|3IZI|K Chain K, Mm-Cpn Rls With Atp
pdb|3IZI|L Chain L, Mm-Cpn Rls With Atp
pdb|3IZI|M Chain M, Mm-Cpn Rls With Atp
pdb|3IZI|N Chain N, Mm-Cpn Rls With Atp
pdb|3IZI|O Chain O, Mm-Cpn Rls With Atp
pdb|3IZI|P Chain P, Mm-Cpn Rls With Atp
pdb|3IZJ|A Chain A, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|B Chain B, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|C Chain C, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|D Chain D, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|E Chain E, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|F Chain F, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|G Chain G, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|H Chain H, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|I Chain I, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|J Chain J, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|K Chain K, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|L Chain L, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|M Chain M, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|N Chain N, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|O Chain O, Mm-Cpn Rls With Atp And Alfx
pdb|3IZJ|P Chain P, Mm-Cpn Rls With Atp And Alfx
Length = 513
Score = 64.7 bits (156), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 68/287 (23%), Positives = 124/287 (43%), Gaps = 42/287 (14%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +M + + ++ +L A
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDKERVSAQMPKKVTDAKIALLNCA 232
Query: 135 LEYQRV----------PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYA 184
+E + P +L F +QE LK ++++I+A NVL +K + A
Sbjct: 233 IEIKETETDAEIRITDPAKLMEFI----EQEEKMLKDMVAEIKASGANVLFCQKGIDDLA 288
Query: 185 QDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 244
Q L + I VK+ +E++A+ TGA + +I +S LG L + K+S
Sbjct: 289 QHYLAKEGIVAARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS----- 343
Query: 245 SNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 344 --------GDSMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 382
>pdb|1ASS|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
pdb|1ASX|A Chain A, Apical Domain Of The Chaperonin From Thermoplasma
Acidophilum
Length = 159
Score = 62.4 bits (150), Expect = 2e-09, Method: Composition-based stats.
Identities = 39/150 (26%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 105 IKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----------PNQLASFNTLLQQQ 154
+ G+V K H +M +N ++ ++ ALE ++ P+++ F Q
Sbjct: 1 MSGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKVQISDPSKIQDF----LNQ 56
Query: 155 ENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 214
E + K ++ KI+ NV+L +K + AQ L + I V VK+ +E++A+ TGA
Sbjct: 57 ETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAK 116
Query: 215 ITPSIDNISTTRLGHCELFKLEKVSEEHET 244
I +D+++ + LG E + K+ ++ T
Sbjct: 117 IVTDLDDLTPSVLGEAETVEERKIGDDRMT 146
>pdb|1E0R|B Chain B, Beta-Apical Domain Of Thermosome
Length = 159
Score = 60.5 bits (145), Expect = 6e-09, Method: Composition-based stats.
Identities = 42/150 (28%), Positives = 77/150 (51%), Gaps = 14/150 (9%)
Query: 105 IKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----------PNQLASFNTLLQQQ 154
+ G++ K H M ++ ++ +L LE ++ P+ + F L Q+
Sbjct: 1 MNGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDTNLRIEDPSMIQKF---LAQE 57
Query: 155 ENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 214
EN L+ ++ KI+++ NV++ +K + AQ L I V VK+ ++++A+ TGA
Sbjct: 58 EN-MLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGAS 116
Query: 215 ITPSIDNISTTRLGHCELFKLEKVSEEHET 244
I +ID IS++ LG E + KV E++ T
Sbjct: 117 IVSTIDEISSSDLGTAERVEQVKVGEDYMT 146
>pdb|3J02|A Chain A, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|B Chain B, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|C Chain C, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|D Chain D, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|E Chain E, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|F Chain F, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|G Chain G, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|H Chain H, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|I Chain I, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|J Chain J, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|K Chain K, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|L Chain L, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|M Chain M, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|N Chain N, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|O Chain O, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
pdb|3J02|P Chain P, Lidless D386a Mm-Cpn In The Pre-Hydrolysis Atp-Bound State
Length = 491
Score = 60.5 bits (145), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 44/277 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +R+++Q P+
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDK----ERVSAQM--PK------- 219
Query: 135 LEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 194
+ ++A N +++ ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 220 ---KVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIV 276
Query: 195 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSK 254
VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 277 AARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GD 323
Query: 255 TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 324 SMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDAAV 360
>pdb|3IYF|A Chain A, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|B Chain B, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|C Chain C, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|D Chain D, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|E Chain E, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|F Chain F, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|G Chain G, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|H Chain H, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|I Chain I, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|J Chain J, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|K Chain K, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|L Chain L, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|M Chain M, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|N Chain N, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|O Chain O, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3IYF|P Chain P, Atomic Model Of The Lidless Mm-Cpn In The Open State
pdb|3KFE|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|E Chain E, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|F Chain F, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|G Chain G, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFE|H Chain H, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|A Chain A, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|B Chain B, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|C Chain C, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
pdb|3KFK|D Chain D, Crystal Structures Of A Group Ii Chaperonin From
Methanococcus Maripaludis
Length = 521
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 44/277 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 120 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 179
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +R+++Q P+
Sbjct: 180 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDK----ERVSAQM--PK------- 225
Query: 135 LEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 194
+ ++A N +++ ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 226 ---KVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIV 282
Query: 195 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSK 254
VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 283 AARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GD 329
Query: 255 TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 330 SMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 366
>pdb|3IZN|A Chain A, Mm-Cpn Deltalid With Atp
pdb|3IZN|B Chain B, Mm-Cpn Deltalid With Atp
pdb|3IZN|C Chain C, Mm-Cpn Deltalid With Atp
pdb|3IZN|D Chain D, Mm-Cpn Deltalid With Atp
pdb|3IZN|E Chain E, Mm-Cpn Deltalid With Atp
pdb|3IZN|F Chain F, Mm-Cpn Deltalid With Atp
pdb|3IZN|G Chain G, Mm-Cpn Deltalid With Atp
pdb|3IZN|H Chain H, Mm-Cpn Deltalid With Atp
pdb|3IZN|I Chain I, Mm-Cpn Deltalid With Atp
pdb|3IZN|J Chain J, Mm-Cpn Deltalid With Atp
pdb|3IZN|K Chain K, Mm-Cpn Deltalid With Atp
pdb|3IZN|L Chain L, Mm-Cpn Deltalid With Atp
pdb|3IZN|M Chain M, Mm-Cpn Deltalid With Atp
pdb|3IZN|N Chain N, Mm-Cpn Deltalid With Atp
pdb|3IZN|O Chain O, Mm-Cpn Deltalid With Atp
pdb|3IZN|P Chain P, Mm-Cpn Deltalid With Atp
pdb|3J03|A Chain A, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|B Chain B, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|C Chain C, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|D Chain D, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|E Chain E, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|F Chain F, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|G Chain G, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|H Chain H, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|I Chain I, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|J Chain J, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|K Chain K, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|L Chain L, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|M Chain M, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|N Chain N, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|O Chain O, Lidless Mm-Cpn In The Closed State With AtpALFX
pdb|3J03|P Chain P, Lidless Mm-Cpn In The Closed State With AtpALFX
Length = 491
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 124/277 (44%), Gaps = 44/277 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +R+++Q P+
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDK----ERVSAQM--PK------- 219
Query: 135 LEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 194
+ ++A N +++ ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 220 ---KVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIV 276
Query: 195 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSK 254
VK+ +E++A+ TGA + +I ++S LG L + K+S
Sbjct: 277 AARRVKKSDMEKLAKATGANVITNIKDLSAQDLGDAGLVEERKIS-------------GD 323
Query: 255 TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 324 SMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|3P9D|F Chain F, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|N Chain N, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|FF Chain f, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|NN Chain n, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|F Chain F, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|N Chain N, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|FF Chain f, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|NN Chain n, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 546
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 53/228 (23%), Positives = 99/228 (43%), Gaps = 29/228 (12%)
Query: 98 SPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQE-- 155
SP ++TFIKG+V +H M ++ +N +LIL +LEY++ F + Q++
Sbjct: 203 SPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEVNSGFFYSSADQRDKL 262
Query: 156 --------NDHLKMVI---SKIEALRPN---VLLVEKSVSSYAQDLLLAKEISLVLNVKR 201
+ LK +I +++ + P+ V++ +K + + D+ I + KR
Sbjct: 263 AASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKR 322
Query: 202 PLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG 261
+ER+ TG S++++S LG L E + EE T N P
Sbjct: 323 RNMERLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGEEKFTYVTENTDPKS------- 375
Query: 262 CPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGA 309
C +L++G L + K V+ + A ++ + + + GA
Sbjct: 376 ------CTILIKGSTHYALAQTKDAVRDGLRAVANVLKDKNIIPGAGA 417
>pdb|3IZK|A Chain A, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|B Chain B, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|C Chain C, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|D Chain D, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|E Chain E, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|F Chain F, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|G Chain G, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|H Chain H, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|I Chain I, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|J Chain J, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|K Chain K, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|L Chain L, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|M Chain M, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|N Chain N, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|O Chain O, Mm-Cpn Rls Deltalid With Atp
pdb|3IZK|P Chain P, Mm-Cpn Rls Deltalid With Atp
pdb|3IZL|A Chain A, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|B Chain B, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|C Chain C, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|D Chain D, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|E Chain E, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|F Chain F, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|G Chain G, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|H Chain H, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|I Chain I, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|J Chain J, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|K Chain K, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|L Chain L, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|M Chain M, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|N Chain N, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|O Chain O, Mm-Cpn Rls Deltalid With Atp And Alfx
pdb|3IZL|P Chain P, Mm-Cpn Rls Deltalid With Atp And Alfx
Length = 491
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 64/277 (23%), Positives = 123/277 (44%), Gaps = 44/277 (15%)
Query: 29 VVQGHFRAL--VSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSR------- 79
VV+G+ A ELL+ ++G +D E +T+I + A K +
Sbjct: 114 VVKGYQAAAQKAQELLKTIACEVGAQDKEILTKIAMTSITGKGAEKAKEKLAEIIVEAVS 173
Query: 80 -----GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGA 134
G +D D +K++ + S +++ IKGV+ K +R+++Q P+
Sbjct: 174 AVVDDEGKVDK-DLIKIEKKSGASIDDTELIKGVLVDK----ERVSAQM--PK------- 219
Query: 135 LEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEIS 194
+ ++A N +++ ++ LK ++++I+A NVL +K + AQ L + I
Sbjct: 220 ---KVTDAKIALLNCAIEETASEMLKDMVAEIKASGANVLFCQKGIDDLAQHYLAKEGIV 276
Query: 195 LVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSK 254
VK+ +E++A+ TGA + +I +S LG L + K+S
Sbjct: 277 AARRVKKSDMEKLAKATGANVIAAIAALSAQDLGDAGLVEERKIS-------------GD 323
Query: 255 TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291
++++ E C +L+RG +++V V AV
Sbjct: 324 SMIFVEECKHPKAVTMLIRGTTEHVIEEVARAVDDAV 360
>pdb|3P9D|G Chain G, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|O Chain O, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|GG Chain g, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|OO Chain o, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|G Chain G, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|O Chain O, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|GG Chain g, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|OO Chain o, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 550
Score = 53.9 bits (128), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 56/257 (21%), Positives = 100/257 (38%), Gaps = 36/257 (14%)
Query: 72 FVKPDTSRGGSMDPGDY----VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQ---YR 124
FVK S+D D + +K I G+ ES FI GV K + Q +
Sbjct: 178 FVKMCVDAVLSLDRNDLDDKLIGIKKIPGGAMEESLFINGVAFKKTFSYAGFEQQPKKFN 237
Query: 125 NPRLLILGGALEYQRVPNQLASFNTLLQQQENDHLKMVIS-----------KIEALRPNV 173
NP++L L LE + + N ++ + + + ++ ++E N+
Sbjct: 238 NPKILSLNVELELKAEKD-----NAEVRVEHVEDYQAIVDAEWQLIFEKLRQVEETGANI 292
Query: 174 LLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELF 233
+L + + A + I V + R+ + G I + +I LG C LF
Sbjct: 293 VLSKLPIGDLATQFFADRNIFCAGRVSADDMNRVIQAVGGSIQSTTSDIKPEHLGTCALF 352
Query: 234 KLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFA 293
+ ++ E ++N F+GCP+ C +LLRG + + +V+ + A+
Sbjct: 353 EEMQIGSE-----RYN--------LFQGCPQAKTCTLLLRGGAEQVIAEVERSLHDAIMI 399
Query: 294 AYHLSLETSFLADEGAT 310
+A GAT
Sbjct: 400 VKRALQNKLIVAGGGAT 416
>pdb|3IYG|E Chain E, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 50.1 bits (118), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 52/230 (22%), Positives = 94/230 (40%), Gaps = 19/230 (8%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ--- 143
+ +KV+ G ++ IKGV+ K+ H +M Q + ++ IL E + +
Sbjct: 185 ELIKVEGKVGGRLEDTKLIKGVIVDKDFSHPQMPKQVEDAKIAILTCPFEPPKPKTKHKL 244
Query: 144 ----LASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 199
+ F L Q+ E + + +I +I+ N+ + + A LLL ++ V V
Sbjct: 245 DVTSVEDFKAL-QKYEKEKFEEMIRQIKETGANLAVCQWGFDDEANHLLLQNDLPAVRWV 303
Query: 200 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYF 259
P +E IA TG I P ++ +LG L K E S F K ++
Sbjct: 304 GGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVK--------EIS--FGTTKDK-MLVI 352
Query: 260 EGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGA 309
E C + +RG + +++ K + A+ +L + + GA
Sbjct: 353 EQCKNSRAVTIFIRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGA 402
>pdb|3IYG|H Chain H, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 515
Score = 48.9 bits (115), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/244 (21%), Positives = 95/244 (38%), Gaps = 50/244 (20%)
Query: 89 VKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQ---YRNPRLLILGGALE--------- 136
+ +K + G+ ES + GV K + Q Y NP + +L LE
Sbjct: 186 IGIKKVQGGALEESQLVAGVAFKKTFSYAGFEMQPKKYHNPMIALLNVELELKAEKDNAE 245
Query: 137 --------YQRVPNQLASFNTLLQQQENDH---LKMVISKIEALRPNVLLVEKSVSSYAQ 185
YQ + + A +N L + E H K+V+SK+ + A
Sbjct: 246 IRVHTVEDYQAIVD--AEWNILYDKLEKIHHSGAKVVLSKL------------PIGDVAT 291
Query: 186 DLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETS 245
+++ V L+R G I S++ +S+ LG C++F+ ++ E
Sbjct: 292 QYFADRDMFCAGRVPEEDLKRTMMACGGSIQTSVNALSSDVLGRCQVFEETQIGGE---- 347
Query: 246 NQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLA 305
++N +F GCP+ C ++LRG + +++ + + A+ S +A
Sbjct: 348 -RYN--------FFTGCPKAKTCTIILRGGAEQFMEETERSLHDAIMIVRRAIKNDSVVA 398
Query: 306 DEGA 309
GA
Sbjct: 399 GGGA 402
>pdb|3P9D|B Chain B, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|J Chain J, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|BB Chain b, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|JJ Chain j, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|B Chain B, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|J Chain J, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|BB Chain b, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|JJ Chain j, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 527
Score = 45.1 bits (105), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/222 (19%), Positives = 93/222 (41%), Gaps = 21/222 (9%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLAS 146
+++++ I G ++S +G + K + + + N ++LI L+ +V
Sbjct: 191 EHIQIIKILGGKLSDSFLDEGFILAKKFGNNQ-PKRIENAKILIANTTLDTDKVKIFGTK 249
Query: 147 FNT-------LLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 199
F L++ E + +K I+KI N + + + Y + L I+ + +
Sbjct: 250 FKVDSTAKLAQLEKAEREKMKNKIAKISKFGINTFINRQLIYDYPEQLFTDLGINSIEHA 309
Query: 200 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYF 259
+ER+A TG + + D S +LG C++ +E++ ++P + F
Sbjct: 310 DFEGVERLALVTGGEVVSTFDEPSKCKLGECDV--IEEI--------MLGEQP---FLKF 356
Query: 260 EGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 301
GC C ++LRG + L + + + A+ + ET
Sbjct: 357 SGCKAGEACTIVLRGATDQTLDEAERSLHDALSVLSQTTKET 398
>pdb|3P9D|E Chain E, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9D|M Chain M, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|EE Chain e, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|3P9E|MM Chain m, The Crystal Structure Of Yeast Cct Reveals Intrinsic
Asymmetry Of Eukaryotic Cytosolic Chaperonins
pdb|4D8Q|E Chain E, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8Q|M Chain M, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|EE Chain e, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
pdb|4D8R|MM Chain m, Molecular Architecture Of The Eukaryotic Chaperonin
TricCCT DERIVED By A Combination Of Chemical
Crosslinking And Mass-Spectrometry, Xl- Ms
Length = 562
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/167 (24%), Positives = 65/167 (38%), Gaps = 34/167 (20%)
Query: 87 DYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM------------------TSQYRNPR- 127
D +K++ GS ++S I GV+ K+ H +M T + P+
Sbjct: 222 DLIKMQGRVGGSISDSKLINGVILDKDFSHPQMPKCVLPKEGSDGVKLAILTCPFEPPKP 281
Query: 128 ----LLILGGALEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSY 183
L + EYQ+ LQ E D K +I ++ +V++ +
Sbjct: 282 KTKHKLDISSVEEYQK-----------LQTYEQDKFKEMIDDVKKAGADVVICQWGFDDE 330
Query: 184 AQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHC 230
A LLL ++ V V LE IA T I P ++S +LG C
Sbjct: 331 ANHLLLQNDLPAVRWVGGQELEHIAISTNGRIVPRFQDLSKDKLGTC 377
>pdb|2IUL|A Chain A, Human Tace G13 Mutant
Length = 591
Score = 37.0 bits (84), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I Q ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIAQHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPAQELEE--YNKILLDM 106
>pdb|3BKK|A Chain A, Tesis Ace Co-Crystal Structure With Ketone Ace Inhibitor Kaf
pdb|3BKL|A Chain A, Testis Ace Co-Crystal Structure With Ketone Ace Inhibitor
Kaw
pdb|3L3N|A Chain A, Testis Ace Co-Crystal Structure With Novel Inhibitor Lisw
Length = 591
Score = 36.6 bits (83), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/100 (27%), Positives = 49/100 (49%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I Q ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAGANWNYNTNITTETSKILLQKNMQIAQHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPAQELEE--YNKILLDM 106
>pdb|3IYG|Z Chain Z, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 517
Score = 35.4 bits (80), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 49/258 (18%), Positives = 103/258 (39%), Gaps = 43/258 (16%)
Query: 98 SPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQEN- 156
S +++ I+G+V +H M + + +L +LEY++ F +++E
Sbjct: 192 SETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSGFFYKSAEEREKL 251
Query: 157 ---------DHLKMVISKIEAL-----RPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRP 202
D +K +I + + + V++ +K + ++ D L + I + KR
Sbjct: 252 VKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRR 311
Query: 203 LLERIARCTGALITPSIDNIS-TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG 261
+ER+ G + S+D+++ LGH +++ + EE T + E
Sbjct: 312 NMERLTLACGGIALNSLDDLNPDCLLGHAGVYEY-TLGEEKFT-------------FIEK 357
Query: 262 CPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSIS 321
C +L++G + L ++K ++ + A + D+G +P
Sbjct: 358 CNNPRSVTLLIKGPNKHTLTQIKDAIRDGLRAVKN-------AIDDGCVVP------GAG 404
Query: 322 KPERMMADNAISAIPSSK 339
E MA+ + PS K
Sbjct: 405 AVEVAMAEALVKYKPSVK 422
>pdb|3IYG|B Chain B, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
pdb|3KTT|B Chain B, Atomic Model Of Bovine Tric Cct2(Beta) Subunit Derived
From A 4.0 Angstrom Cryo-Em Map
pdb|4A0O|A Chain A, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|B Chain B, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|C Chain C, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|D Chain D, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|E Chain E, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|F Chain F, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|G Chain G, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|H Chain H, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|I Chain I, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|J Chain J, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|K Chain K, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|L Chain L, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|M Chain M, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|N Chain N, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|O Chain O, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0O|P Chain P, Symmetry-Free Cryo-Em Map Of Tric In The Nucleotide-Free
(Apo) State
pdb|4A0V|A Chain A, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|B Chain B, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|C Chain C, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|D Chain D, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|E Chain E, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|F Chain F, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|G Chain G, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|H Chain H, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|I Chain I, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|J Chain J, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|K Chain K, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|L Chain L, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|M Chain M, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|N Chain N, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|O Chain O, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0V|P Chain P, Model Refined Against The Symmetry-Free Cryo-Em Map Of
Tric- Amp-Pnp
pdb|4A0W|A Chain A, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|B Chain B, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|C Chain C, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|D Chain D, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|E Chain E, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|F Chain F, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|G Chain G, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|H Chain H, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|I Chain I, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|J Chain J, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|K Chain K, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|L Chain L, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|M Chain M, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|N Chain N, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|O Chain O, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A0W|P Chain P, Model Built Against Symmetry-Free Cryo-Em Map Of
Tric-Adp-Alfx
pdb|4A13|A Chain A, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|B Chain B, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|C Chain C, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|D Chain D, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|E Chain E, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|F Chain F, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|G Chain G, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|H Chain H, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|I Chain I, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|J Chain J, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|K Chain K, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|L Chain L, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|M Chain M, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|N Chain N, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|O Chain O, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
pdb|4A13|P Chain P, Model Refined Agains Symmetry-Free Cryo-Em Map Of Tric-Adp
Length = 513
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 47/109 (43%), Gaps = 13/109 (11%)
Query: 172 NVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCE 231
N + + + +Y + L A + + + +ER+A TG I + D+ +LG C+
Sbjct: 275 NCFINRQLIYNYPEQLFGAAGVMAIEHADFVGVERLALVTGGEIASTFDHPELVKLGSCK 334
Query: 232 LFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREEL 280
L + + E+ L++F G C ++LRG ++ L
Sbjct: 335 LIEEVMIGEDK-------------LIHFSGVALGEACTIVLRGATQQIL 370
>pdb|2YDM|A Chain A, Structural Characterization Of Angiotensin-I Converting
Enzyme In Complex With A Selenium Analogue Of Captopril
Length = 589
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPA--QELEEYNKILLDM 106
>pdb|1O8A|A Chain A, Crystal Structure Of Human Angiotensin Converting Enzyme
(Native).
pdb|1UZF|A Chain A, Complex Of The Anti-Hypertensive Drug Captopril An The Human
Testicular Angiotensin I-Converting Enzyme
pdb|4APH|A Chain A, Human Angiotensin-Converting Enzyme In Complex With
Angiotensin-Ii
pdb|4APJ|A Chain A, Human Angiotensin-Converting Enzyme In Complex With Bppb
pdb|1O86|A Chain A, Crystal Structure Of Human Angiotensin Converting Enzyme In
Complex With Lisinopril.
pdb|1UZE|A Chain A, Complex Of The Anti-hypertensive Drug Enalaprilat And The
Human Testicular Angiotensin I-converting Enzyme
Length = 589
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPA--QELEEYNKILLDM 106
>pdb|2OC2|A Chain A, Structure Of Testis Ace With Rxpa380
Length = 591
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPAQELEE--YNKILLDM 106
>pdb|2IUX|A Chain A, Human Tace Mutant G1234
Length = 591
Score = 34.7 bits (78), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I ++K+ G + K D+
Sbjct: 11 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKY--GTQARKFDV 68
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 69 NQLQNTTIKRIIKKVQDLERAALPAQELEE--YNKILLDM 106
>pdb|2XY9|A Chain A, Human Angiotensin Converting Enzyme In Complex With
Phosphinic Tripeptide
Length = 585
Score = 34.7 bits (78), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 48/100 (48%), Gaps = 4/100 (4%)
Query: 1182 IIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDL 1241
+++ +T + E+A + Y T+ S L K + I ++K+ G + K D+
Sbjct: 8 FVEEYDRTSQVVWNEYAEANWNYNTNITTETSKILLQKNMQIANHTLKY--GTQARKFDV 65
Query: 1242 MVMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDM 1281
++N +R I +V DL+ +A + NK+LLDM
Sbjct: 66 NQLQNTTIKRIIKKVQDLERAALPA--QELEEYNKILLDM 103
>pdb|3IYG|D Chain D, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 518
Score = 34.3 bits (77), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 65/330 (19%), Positives = 144/330 (43%), Gaps = 49/330 (14%)
Query: 76 DTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLI---LG 132
D + S+D D VK + G+ ++ ++G+V T+ + + +T + LI L
Sbjct: 175 DPATATSVDLRDIKIVKKLG-GTIDDCELVEGLVLTQKVANSGITRVEKAKIGLIQFCLS 233
Query: 133 GA---LEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYA 184
++ Q V + + +L++ E ++ ++ +I+ NVLL++KS+ S A
Sbjct: 234 APKTDMDNQIVVSDYVQMDRVLRE-ERAYILNLVKQIKKTGCNVLLIQKSILRDALSDLA 292
Query: 185 QDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHET 244
L +I +V +++R +E I + G +D + LG EL
Sbjct: 293 LHFLNKMKIMVVKDIEREDIEFICKTIGTKPVAHVDQFTADMLGSAEL------------ 340
Query: 245 SNQFNKKPSKTLMYFEGC--PRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETS 302
+ + + S L+ GC P + +++RG + +++ + + A+ L + +
Sbjct: 341 AEEVSLNGSGKLIKITGCASPGK-TVTIVVRGSNKLVIEEAERSIHDALCVIRCLVKKRA 399
Query: 303 FLADEGATLPKMRLKHSISKPERMMAD----------NAISAIPSSKVAAN--------Y 344
+A GA P++ L +++ R ++ +A+ IPS+ +A N
Sbjct: 400 LIAGGGA--PEIELALRLTEYSRTLSGMESYCIRAFADAMEVIPST-LAENAGLNPISTV 456
Query: 345 QEVADDSTRDDGSVSLRLEHGGLESLSEQL 374
E+ + + + + + + GG+ ++ E+L
Sbjct: 457 TELRNRHAQGEKTTGINVRKGGISNILEEL 486
>pdb|3IYG|A Chain A, Ca Model Of Bovine TricCCT DERIVED FROM A 4.0 ANGSTROM
Cryo-Em Map
Length = 529
Score = 30.8 bits (68), Expect = 5.5, Method: Compositional matrix adjust.
Identities = 30/130 (23%), Positives = 53/130 (40%), Gaps = 19/130 (14%)
Query: 151 LQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARC 210
++Q+E+D K I KI A NV+L + + V V + L+RIA+
Sbjct: 257 IRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKA 316
Query: 211 TGALITPSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR 264
+GA + ++ N+ + LG E E++ ++ L+ +
Sbjct: 317 SGATVLSTLANLEGEETFEASMLGQAEEVVQERICDDE-------------LILIKNTKA 363
Query: 265 RLGCMVLLRG 274
R V+LRG
Sbjct: 364 RTSASVILRG 373
>pdb|2FJC|A Chain A, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|B Chain B, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|C Chain C, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|D Chain D, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|E Chain E, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|F Chain F, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|G Chain G, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|H Chain H, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|I Chain I, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|J Chain J, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|K Chain K, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|L Chain L, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|M Chain M, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|N Chain N, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|O Chain O, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
pdb|2FJC|P Chain P, Crystal Structure Of Antigen Tpf1 From Treponema Pallidum
Length = 156
Score = 30.4 bits (67), Expect = 8.1, Method: Composition-based stats.
Identities = 24/106 (22%), Positives = 43/106 (40%), Gaps = 12/106 (11%)
Query: 404 HDVGLDFRSFNEC-EDLKVSIVNSFDALQQELQEIMGQEERQLGESHELMKFEGVNEDEV 462
H G++F+ +E E+ VS+ +FD + + L ++ Q + E L E E+
Sbjct: 38 HIYGIEFKQVHELLEEYYVSVTEAFDTIAERLLQLGAQAPASMAEYLALSGIAEETEKEI 97
Query: 463 S-----------GEYFSAADTNQSILVSFSSRCVLKGTVCERSRLL 497
+ EY S + +L + S V G + + R L
Sbjct: 98 TIVSALARVKRDFEYLSTRFSQTQVLAAESGDAVTDGIITDILRTL 143
>pdb|1EI3|B Chain B, Crystal Structure Of Native Chicken Fibrinogen
pdb|1EI3|E Chain E, Crystal Structure Of Native Chicken Fibrinogen
pdb|1M1J|B Chain B, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
pdb|1M1J|E Chain E, Crystal Structure Of Native Chicken Fibrinogen With Two
Different Bound Ligands
Length = 464
Score = 30.0 bits (66), Expect = 8.4, Method: Composition-based stats.
Identities = 27/83 (32%), Positives = 37/83 (44%), Gaps = 17/83 (20%)
Query: 1039 EYEDWVADKLYDNDGSWSAGEIHKEGS----AVSSFS----------AWQSFGSLDLDYI 1084
E EDW DK+ G ++ IH EG+ +VS++ A Q +G I
Sbjct: 317 EMEDWNGDKVSALYGGFT---IHNEGNKYQLSVSNYKGNAGNALMEGASQLYGENRTMTI 373
Query: 1085 HYGSYGSEDASSSVGTLFTDPKK 1107
H G Y S + G L TDP+K
Sbjct: 374 HNGMYFSTYDRDNDGWLTTDPRK 396
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.132 0.383
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 40,327,951
Number of Sequences: 62578
Number of extensions: 1678213
Number of successful extensions: 4350
Number of sequences better than 100.0: 46
Number of HSP's better than 100.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 4270
Number of HSP's gapped (non-prelim): 54
length of query: 1398
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1287
effective length of database: 8,027,179
effective search space: 10330979373
effective search space used: 10330979373
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.9 bits)