Query 000604
Match_columns 1398
No_of_seqs 342 out of 1972
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 20:39:30 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000604.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000604hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 3E-217 6E-222 1998.9 75.2 1262 11-1398 286-1595(1598)
2 COG5253 MSS4 Phosphatidylinosi 100.0 1.4E-71 3.1E-76 632.6 17.3 357 1015-1397 241-604 (612)
3 cd00139 PIPKc Phosphatidylinos 100.0 5.8E-68 1.3E-72 607.9 26.7 255 1125-1390 54-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 7.2E-67 1.6E-71 606.4 25.5 264 1108-1389 16-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 4.6E-59 1E-63 532.2 21.1 251 1126-1390 96-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 1.4E-56 3E-61 504.2 16.6 222 1155-1389 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 1.8E-55 3.8E-60 545.5 26.8 264 1109-1390 382-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 2.6E-48 5.7E-53 439.9 29.3 259 36-308 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 2.2E-47 4.8E-52 473.7 29.1 297 3-314 91-414 (525)
10 TIGR02339 thermosome_arch ther 100.0 3.3E-45 7.1E-50 453.7 30.3 297 3-314 91-413 (519)
11 KOG0364 Chaperonin complex com 100.0 2.2E-46 4.7E-51 421.7 16.7 296 2-314 93-414 (527)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 1.3E-44 2.9E-49 448.6 30.0 296 3-314 98-420 (526)
13 cd03343 cpn60 cpn60 chaperonin 100.0 4.8E-44 1E-48 443.6 29.3 296 3-314 90-410 (517)
14 KOG0361 Chaperonin complex com 100.0 1.8E-44 3.9E-49 399.5 20.3 292 2-315 94-417 (543)
15 PTZ00212 T-complex protein 1 s 100.0 1.5E-43 3.1E-48 439.4 29.9 289 3-314 102-419 (533)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 2.7E-43 5.9E-48 436.5 30.3 296 3-314 102-424 (532)
17 cd03335 TCP1_alpha TCP-1 (CTT 100.0 3.1E-43 6.8E-48 436.6 29.9 296 3-314 83-411 (527)
18 cd03340 TCP1_eta TCP-1 (CTT or 100.0 8.9E-43 1.9E-47 432.3 30.3 290 3-314 91-412 (522)
19 TIGR02342 chap_CCT_delta T-com 100.0 1.1E-42 2.5E-47 430.3 30.3 295 3-314 84-410 (517)
20 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.7E-42 3.6E-47 428.9 31.6 289 3-314 90-407 (517)
21 TIGR02347 chap_CCT_zeta T-comp 100.0 2.3E-42 5.1E-47 427.4 30.1 293 3-314 91-419 (531)
22 cd03338 TCP1_delta TCP-1 (CTT 100.0 3.3E-42 7.1E-47 426.8 29.5 295 3-314 83-409 (515)
23 TIGR02340 chap_CCT_alpha T-com 100.0 1.4E-41 3.1E-46 422.2 30.8 296 3-314 87-415 (536)
24 TIGR02345 chap_CCT_eta T-compl 100.0 1.9E-41 4.1E-46 419.9 29.6 291 3-314 92-413 (522)
25 cd03337 TCP1_gamma TCP-1 (CTT 100.0 9.7E-42 2.1E-46 418.5 25.6 263 3-314 91-373 (480)
26 TIGR02341 chap_CCT_beta T-comp 100.0 2.1E-40 4.5E-45 409.7 31.8 289 3-314 91-408 (519)
27 KOG0358 Chaperonin complex com 100.0 4.7E-40 1E-44 364.0 19.1 298 2-315 100-428 (534)
28 TIGR02346 chap_CCT_theta T-com 100.0 5.1E-39 1.1E-43 398.4 29.6 291 3-314 93-411 (531)
29 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 7.1E-39 1.5E-43 393.3 24.4 271 3-314 87-376 (484)
30 KOG0363 Chaperonin complex com 100.0 1.2E-38 2.5E-43 351.4 20.9 289 2-313 94-411 (527)
31 KOG0360 Chaperonin complex com 100.0 7.9E-39 1.7E-43 364.1 18.2 295 3-313 94-420 (545)
32 cd00309 chaperonin_type_I_II c 100.0 1.4E-37 3.1E-42 381.4 26.9 259 3-314 83-359 (464)
33 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.1E-37 6.8E-42 380.8 26.9 289 3-313 64-377 (485)
34 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.7E-37 1.9E-41 374.1 26.1 260 3-314 83-363 (472)
35 COG0459 GroL Chaperonin GroEL 100.0 5.4E-36 1.2E-40 366.1 25.1 290 3-314 86-407 (524)
36 cd03333 chaperonin_like chaper 100.0 1.7E-35 3.7E-40 326.0 23.9 207 40-300 3-209 (209)
37 KOG0359 Chaperonin complex com 100.0 2E-36 4.3E-41 341.1 16.0 294 2-314 91-410 (520)
38 KOG0362 Chaperonin complex com 100.0 7.4E-32 1.6E-36 309.8 24.8 292 3-315 101-415 (537)
39 PRK12849 groEL chaperonin GroE 100.0 2.7E-31 5.9E-36 328.8 25.8 265 3-314 89-421 (542)
40 PRK00013 groEL chaperonin GroE 100.0 4.3E-31 9.2E-36 327.1 25.1 266 3-314 89-421 (542)
41 PTZ00114 Heat shock protein 60 100.0 9.5E-31 2.1E-35 325.5 26.2 265 3-314 101-434 (555)
42 PRK12851 groEL chaperonin GroE 100.0 9.9E-31 2.1E-35 324.1 25.4 266 3-314 90-422 (541)
43 cd03344 GroEL GroEL_like type 100.0 1.3E-30 2.9E-35 321.9 25.7 265 3-314 87-419 (520)
44 TIGR02348 GroEL chaperonin Gro 100.0 1.7E-30 3.8E-35 321.4 24.9 265 3-314 88-420 (524)
45 PRK12850 groEL chaperonin GroE 100.0 6.8E-30 1.5E-34 316.8 24.2 266 3-314 90-422 (544)
46 PRK12852 groEL chaperonin GroE 100.0 5.5E-29 1.2E-33 309.4 24.6 265 3-314 90-422 (545)
47 CHL00093 groEL chaperonin GroE 100.0 2.2E-28 4.8E-33 303.0 23.2 267 3-314 89-421 (529)
48 PRK14104 chaperonin GroEL; Pro 100.0 6E-28 1.3E-32 299.3 24.4 265 3-314 90-422 (546)
49 PLN03167 Chaperonin-60 beta su 100.0 2.7E-28 5.8E-33 304.1 18.9 276 3-314 145-476 (600)
50 KOG0357 Chaperonin complex com 99.9 4.6E-26 9.9E-31 251.3 12.4 194 3-313 94-287 (400)
51 KOG0356 Mitochondrial chaperon 97.6 0.00051 1.1E-08 83.0 13.1 278 3-312 103-434 (550)
52 KOG0230 Phosphatidylinositol-4 96.1 0.0051 1.1E-07 81.7 4.5 98 525-636 660-757 (1598)
53 PF02579 Nitro_FeMo-Co: Dinitr 61.3 24 0.00053 33.5 6.6 46 163-209 46-91 (94)
54 cd01143 YvrC Periplasmic bindi 52.2 35 0.00076 36.8 6.8 51 163-213 53-110 (195)
55 cd00851 MTH1175 This uncharact 52.1 33 0.00071 33.2 5.9 38 162-200 55-92 (103)
56 PF07450 HycH: Formate hydroge 47.2 10 0.00022 38.9 1.5 22 1316-1344 24-45 (131)
57 PRK09534 btuF corrinoid ABC tr 47.0 40 0.00086 40.9 6.8 52 162-213 111-169 (359)
58 cd01144 BtuF Cobalamin binding 46.5 45 0.00097 37.5 6.8 52 163-214 50-108 (245)
59 TIGR03659 IsdE heme ABC transp 46.2 37 0.0008 39.6 6.2 52 163-214 84-141 (289)
60 PRK15084 formate hydrogenlyase 44.6 12 0.00027 38.3 1.6 22 1316-1344 26-47 (133)
61 COG1433 Uncharacterized conser 43.7 69 0.0015 32.9 6.7 52 162-214 57-108 (121)
62 cd00562 NifX_NifB This CD repr 43.5 54 0.0012 31.6 5.9 38 162-200 53-90 (102)
63 PLN02667 inositol polyphosphat 38.7 44 0.00095 39.3 5.1 70 1176-1260 23-99 (286)
64 cd01138 FeuA Periplasmic bindi 38.3 60 0.0013 36.7 6.1 50 163-213 59-112 (248)
65 PF06296 DUF1044: Protein of u 37.0 1.3E+02 0.0027 31.0 7.4 78 1131-1208 2-107 (120)
66 PF01497 Peripla_BP_2: Peripla 31.8 1E+02 0.0022 34.2 6.6 52 163-214 53-112 (238)
67 cd01146 FhuD Fe3+-siderophore 31.6 1E+02 0.0022 35.0 6.6 51 163-213 58-114 (256)
68 PRK03379 vitamin B12-transport 31.2 90 0.002 35.9 6.1 51 163-213 65-122 (260)
69 COG1504 Uncharacterized conser 30.3 1.6E+02 0.0035 29.6 6.6 51 166-216 57-113 (121)
70 cd00636 TroA-like Helical back 30.3 1.2E+02 0.0026 30.1 6.3 35 163-197 54-88 (148)
71 PF12226 Astro_capsid_p: Turke 30.1 31 0.00067 36.7 1.8 50 1130-1185 102-154 (230)
72 cd04743 NPD_PKS 2-Nitropropane 29.0 1.4E+02 0.0031 35.7 7.3 55 161-216 73-127 (320)
73 cd01140 FatB Siderophore bindi 26.6 1.3E+02 0.0028 34.4 6.4 51 163-213 65-122 (270)
74 cd01141 TroA_d Periplasmic bin 26.0 73 0.0016 34.3 4.0 34 163-196 62-96 (186)
75 cd01139 TroA_f Periplasmic bin 26.0 1.2E+02 0.0027 36.0 6.3 51 163-213 84-147 (342)
76 cd01147 HemV-2 Metal binding p 23.8 1.3E+02 0.0028 34.1 5.7 51 163-213 67-126 (262)
77 TIGR03151 enACPred_II putative 23.5 2.3E+02 0.005 33.7 7.8 55 162-216 79-133 (307)
78 PF06677 Auto_anti-p27: Sjogre 22.8 48 0.001 27.5 1.3 26 508-533 4-29 (41)
79 cd00853 NifX NifX belongs to a 21.9 2.1E+02 0.0047 27.9 6.0 31 169-200 60-90 (102)
80 cd03465 URO-D_like The URO-D _ 21.9 6E+02 0.013 30.0 11.0 33 255-290 265-297 (330)
81 PRK11411 fecB iron-dicitrate t 20.2 2.1E+02 0.0046 33.5 6.6 51 163-213 94-151 (303)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=2.9e-217 Score=1998.89 Aligned_cols=1262 Identities=50% Similarity=0.789 Sum_probs=948.2
Q ss_pred hhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCccCceE
Q 000604 11 MFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVK 90 (1398)
Q Consensus 11 ell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~~~~w~~~ls~l~v~Av~~v~~~~~~~~~~Di~~~Ik 90 (1398)
+.-.+-+...+....+..+..+|+++++.+|++.+.+++..+....+|.++++.|+|+|+..++|+.+.++.||+.+|||
T Consensus 286 ~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVk 365 (1598)
T KOG0230|consen 286 EYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVK 365 (1598)
T ss_pred CccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceE
Confidence 33333344455667788899999999999999999999988777789999999999999999999998899999999999
Q ss_pred EEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccChhHHHHHHHHHHHHHHHHHHHHHHhcC
Q 000604 91 VKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALR 170 (1398)
Q Consensus 91 Ikki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~~~sl~~ii~~qE~e~L~~~V~rI~~~g 170 (1398)
||||+||+..||++|+||||+|+++||.|++++++|||+|+.|+|+|+|..+++.++++++. ||++||+.+|+||.+.+
T Consensus 366 vK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlq-qE~e~lk~~varI~s~~ 444 (1598)
T KOG0230|consen 366 VKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQ-QEKEYLKKVVARIESLR 444 (1598)
T ss_pred EEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHh-hHHHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999 99999999999999999
Q ss_pred CCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCC
Q 000604 171 PNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNK 250 (1398)
Q Consensus 171 pnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~ 250 (1398)
|||++|+|+|+++|+++|...||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++|
T Consensus 445 p~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h-------- 516 (1598)
T KOG0230|consen 445 PDVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH-------- 516 (1598)
T ss_pred CCeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------
Confidence 999999999999999999999999999999999999999999999999999999999999999999999864
Q ss_pred CCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccccccCCC-Ccccccccc
Q 000604 251 KPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHSI-SKPERMMAD 329 (1398)
Q Consensus 251 ~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~~~~~~~-~~~~~~~~~ 329 (1398)
+..||+|||+||+.++||||+|||++...|.+||++++++++++|++.+|.+|++|.||........... ..+. ...
T Consensus 517 k~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~--~~~ 594 (1598)
T KOG0230|consen 517 KPSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETS--IIN 594 (1598)
T ss_pred cchhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccc--ccc
Confidence 5679999999999999999999999999999999999999999999999999999999998754333221 1111 334
Q ss_pred cccccCCCccccccccccccCCCCCCCccccccccCccccccccccCCCccccccccC---Cc---CCCCCCCc----cC
Q 000604 330 NAISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLD---HR---YGDGPTDA----CN 399 (1398)
Q Consensus 330 ~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~~~---~~---~~~~~~~~----~~ 399 (1398)
++++++|+++..+.+.+.......+..+.+.....+ -++++|+..++++.. +. ++...... ..
T Consensus 595 ~~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~~~~-------~ls~sp~~~~~~~~~~i~P~~~~~e~~~~~~~~~~~~ 667 (1598)
T KOG0230|consen 595 RSISTSPGETDSTAEKAPVEALQVEPNRFNGALSSE-------LLSSSPFLEFPLDLLEIAPGELVIETRLSSYSKGPKQ 667 (1598)
T ss_pred cccccCCCCCcchhcccchhhhccchhhhhcccccc-------eeecccccccCCCccccCCccceeecchhhhcCchhh
Confidence 566667766554433332211112222233222211 234556544444322 00 10000000 00
Q ss_pred CcCccccc---ccccc-ccccc-cccccccccchhhhHHHHHHHhhhhhhccc---cchhhccc--CccccccccccCCC
Q 000604 400 DNLEHDVG---LDFRS-FNECE-DLKVSIVNSFDALQQELQEIMGQEERQLGE---SHELMKFE--GVNEDEVSGEYFSA 469 (1398)
Q Consensus 400 ~~~~~~~~---~~~~~-~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~ 469 (1398)
..+..... ..+.+ ...++ ......-..+. . ........ ..+.+... ..++.+ ...+.++
T Consensus 668 ~~lv~~~es~~~~~~~s~~~~~~~l~e~~~~~~~---------~-~~~k~~~~~~~~~~~~~~~~~~~~e~~-~s~~~~~ 736 (1598)
T KOG0230|consen 668 NGLVPAHESVLNDLHESTLSILSKLPETRSGTHE---------G-NEDKGPGLEPELANNQNIQRPEETEEQ-SSKDALD 736 (1598)
T ss_pred ccccccccccccccccccccccccccchhcccch---------h-ccccCccccccccccccccchhhhhhh-hcccCCC
Confidence 00110000 00000 00000 00000000000 0 00000000 00000000 111111 4556789
Q ss_pred cCCCceEEEEEeeeecCCCCccCCCeEEEEeecCCCCCchHHHHHHhhccCCCCCCCCchhhhcccceeeecCcEEEEEE
Q 000604 470 ADTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISV 549 (1398)
Q Consensus 470 p~~HQ~I~vL~S~~~~~~~~~C~~P~~v~i~fY~~nD~tLGqFLe~~c~~~~~~C~sC~~pm~~H~r~yvH~~g~i~I~v 549 (1398)
|.+||+|+||||++|...+.+|++||++.|+|||++|++||+||+++||++.|.|++|++||++|+|+|||++||++|.|
T Consensus 737 ~~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v 816 (1598)
T KOG0230|consen 737 PSSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISV 816 (1598)
T ss_pred ccccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEe
Confidence 99999999999999997778899999999999999999999999999999999999999999999999999999999999
Q ss_pred EecCCcCCCCCCCCcEEEEeccccCCCCCCCCCCcceEecccccccccHHHHHHHhccCccccCccCCCCCccccceeee
Q 000604 550 KCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRY 629 (1398)
Q Consensus 550 e~~~~~~lp~~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mS~~tw~~SFgKfLEL~F~~~~~~~~~~~C~H~~~rDhvry 629 (1398)
++++.. +||+++++||||+||.+|++. ||+|++|+||+++|++|||||||++||+|++..|+..|+|++||||+||
T Consensus 817 ~~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~f 892 (1598)
T KOG0230|consen 817 KKLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRF 892 (1598)
T ss_pred eccccc-cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhhh
Confidence 999865 999999999999999999974 7899999999999999999999999999999999999999999999999
Q ss_pred cccCCeEEEEEeeeeeeeEEecCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhH
Q 000604 630 YGFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDL 709 (1398)
Q Consensus 630 F~~~~~v~~f~y~~I~v~ev~~P~~~i~~~~~~~~~~~~~e~~~i~~k~~~~~~~v~~~L~~i~~~~~~~~~~~~~~~~~ 709 (1398)
|||++|||+|+|++|++|+|.+||.++.|+ +.+++|+.+|.++++.||+.+|++|.++|.+|+.+. + -
T Consensus 893 fgf~~mva~f~ys~i~v~~v~lpp~~l~~~-~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~-------~----~ 960 (1598)
T KOG0230|consen 893 FGFGNMVACFRYSPIEVYEVDLPPSKLEFN-HIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKD-------E----N 960 (1598)
T ss_pred cccCCceeeeeeccceeEEEeCChhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c----c
Confidence 999999999999999999999999999999 888999999999999999999999999999998651 1 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhcCcccccccCCc
Q 000604 710 KSHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNA 789 (1398)
Q Consensus 710 ~~~~~el~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~ln~~~r~l~~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~ 789 (1398)
+..+.+|+.++.+|+..|++.++.++.....-+++.+|++.+|+.||+|...++.|+.+++.+...+| . .+..|...
T Consensus 961 ~~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k-~--~~~~~~~~ 1037 (1598)
T KOG0230|consen 961 RPLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLK-L--ESSKDTKP 1037 (1598)
T ss_pred cchhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhc-c--cccccccc
Confidence 55688999999999999999999999977767888899999999999999999999999998776554 1 11111000
Q ss_pred hhhhhhhhcccccccC------CC--CCCCCcCCccC-CCCCCCCccccccccccccccCCCCCCCCCCCCcccccccc-
Q 000604 790 SYAQLKELRTDLFCKD------SK--LDHDNEENVSG-SLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHN- 859 (1398)
Q Consensus 790 ~~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e- 859 (1398)
... ++..+...+-. .. ...|++...+. ....+.. ...+++. ++. .....+....+.....+
T Consensus 1038 ~~~--~~~~~~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp----~~~~s~~--~d~-~~~~~~~~~~~~~s~~~~ 1108 (1598)
T KOG0230|consen 1038 KES--ETNSTAKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLP----LPEDSNS--TDT-GLSGPSEVLEDNESIDEM 1108 (1598)
T ss_pred ccc--cccCccccccCchhhccccccccccccccccCccccccCC----CCCcccc--cch-hccCcccccccccchhhc
Confidence 000 00000000000 00 00111110000 0000000 0000000 000 00000000000000000
Q ss_pred --cccccCCCc-cccccchhhccccccCCCCCCcccccCCCCCCCcccccccCCCCcccccCCCcccccchhhhHHHHHh
Q 000604 860 --REEDVHSDG-EITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERI 936 (1398)
Q Consensus 860 --~~~~~~s~~-~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~er~ 936 (1398)
.+....+.. .....+.+.++++|.|....+.. .|..... .
T Consensus 1109 ~~~v~n~~s~~~~~~~~~~~~l~~~~~g~r~~~~~---------------------------~P~s~~~----------~ 1151 (1598)
T KOG0230|consen 1109 LGSVRNTYSLANKVRKILKQILDSATIGNRANPKS---------------------------SPFSGQD----------H 1151 (1598)
T ss_pred ccccccccchhhHHHHHHHHhcccccccccccCCC---------------------------CCCchhh----------h
Confidence 000000000 01112233333444333221100 0000000 0
Q ss_pred hcCCCCCcccccccccccCCC-cccccccCCchhhHH-hhhhcCchhHhhhhhcccCCCccccc--ccccccCccccccC
Q 000604 937 ARGLPHSLLHLSSIRSFHASG-DYRSMVRDPVSNVMR-TYSQILPLEAQKLNLILSSTPSFISS--ASRMVEGARLLLPQ 1012 (1398)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-~~~~~~~~~~~k~~~~~~~~p~~~s~--~~~~~~~~~l~~P~ 1012 (1398)
..+++..+. .++..+ +.+.|++.|+.+++. ..........++........|.+++. ......+++|++|
T Consensus 1152 ~~~~~~~~~------~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p- 1224 (1598)
T KOG0230|consen 1152 STDLPLESN------PIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPPKYPSSESESEPESSSRLLLP- 1224 (1598)
T ss_pred ccccccccC------CccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCCcCcccccccccccccceecc-
Confidence 001110000 111112 456788888888765 33333333334444445556666665 3344778899999
Q ss_pred CCCCCceEEeeCCCchhhhhhhcCChhHHHHHHhhcccCCCCCCccccccCCCccc-cccccccCCCCcccccc-cCCCC
Q 000604 1013 RGDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVS-SFSAWQSFGSLDLDYIH-YGSYG 1090 (1398)
Q Consensus 1013 ~~~~d~~v~V~EdEPSSiIA~aLsS~dY~~~l~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~d~~~~~-~~s~~ 1090 (1398)
.+.+|.+|+||||||+|+|||||++++|..+..+. ....+ ..++.. ...+..... ....+
T Consensus 1225 ~~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p----------------~~sis~~~S~~~--~~~s~~~e~~~~~~~ 1286 (1598)
T KOG0230|consen 1225 LGLNDLVVPVYEDPPPSLIAYALSSKERINQESSP----------------GLSISFSLSNLQ--GRLSKISEFDDTKSE 1286 (1598)
T ss_pred ccCCcccCCcccCCCchhhhhhhcchhhccCCCCC----------------Cccccccccccc--cchhhhhhhhhhhhc
Confidence 88999999999999999999999997776433210 00000 000000 000000000 00000
Q ss_pred CCCCC------CCCCCcCCCC--CCCCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCccC
Q 000604 1091 SEDAS------SSVGTLFTDP--KKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKW 1162 (1398)
Q Consensus 1091 ~~~~~------~~~~~~~~~~--~~~~~~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~~ 1162 (1398)
+.+.+ ..+.+..+.+ ....|++++|+++.. +|+|++|||++|++||+.||.++++||+||+||.+|
T Consensus 1287 sl~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~egk~------k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W 1360 (1598)
T KOG0230|consen 1287 SLDNSGLESSSYRRGENLQKSKLETRTHLEYQFSEGKA------KYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKW 1360 (1598)
T ss_pred cccccccchhhhcchhhccccccccccceeeeccCCce------EEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCccc
Confidence 00000 0011111223 667999999998865 999999999999999999999999999999999999
Q ss_pred ccCCCCcceeEEeeccCceEecccCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhheeeeEEEEeeecCCCeeEEEEEE
Q 000604 1163 SAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLM 1242 (1398)
Q Consensus 1163 ~~~gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~i 1242 (1398)
.++||||||+|++|.|+|||||+|++.|+++|++|||+||+||.++++++.||+||||||+|||.+|++++|++.|++++
T Consensus 1361 ~aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~Dvm 1440 (1598)
T KOG0230|consen 1361 EAQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVM 1440 (1598)
T ss_pred ccCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EeecccCCCCceeEeeCCCcccccccCCCCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCc
Q 000604 1243 VMENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYS 1322 (1398)
Q Consensus 1243 VMeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYS 1322 (1398)
|||||||+++++|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|+.|.++|||||.||+++||||||
T Consensus 1441 VMENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYS 1520 (1598)
T KOG0230|consen 1441 VMENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYS 1520 (1598)
T ss_pred eehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceeeeecccceeeEeeeecccccchhhhHhHHhhhhcccCCCCCCCCcccChhHHHHHHHHHHHhccccCCCCCCC
Q 000604 1323 LLVGVDEERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKKRFRKAMTSYFLTVPDQWSS 1398 (1398)
Q Consensus 1323 LLvgi~~~~~~~~~GIID~L~~yt~~KklE~~~K~~~~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~f~~~p~~W~~ 1398 (1398)
||||||++++|||+||||||||||||||||+|||..| +||+++..||||+|++|++||++||++||++|||+|++
T Consensus 1521 LLVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sG-l~gpk~~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg 1595 (1598)
T KOG0230|consen 1521 LLVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSG-LGGPKNKQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTG 1595 (1598)
T ss_pred eEEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccc-cccCCCCCCceeCHHHHHHHHHHHHhheeeecCCcccC
Confidence 9999999999999999999999999999999999999 67889999999999999999999999999999999985
No 2
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=1.4e-71 Score=632.64 Aligned_cols=357 Identities=35% Similarity=0.539 Sum_probs=295.8
Q ss_pred CCCceEEeeCCCchhhhhhhcCChhHHHHHHhhcccCCCCCCccccccCCCccccccccccCCCCcccccccCCCCCCC-
Q 000604 1015 DNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSED- 1093 (1398)
Q Consensus 1015 ~~d~~v~V~EdEPSSiIA~aLsS~dY~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~s~~~~~- 1093 (1398)
+.|+.|++|||||||+|||||+++||+.++...+.+.-+ +... .+......-+... ..+|....
T Consensus 241 ~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~~----------De~~---l~~~~le~gh~n~--~~synmltg 305 (612)
T COG5253 241 FSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETM----------DERL---LNGMPLEGGHRNP--QESYNMLTG 305 (612)
T ss_pred cCccccccccCCcchhhhccccchhHHHHHHhhhhhhcc----------hhhh---ccccccccccccc--hhhhhhhhh
Confidence 578889999999999999999999999998755333111 0000 0000000000000 00000000
Q ss_pred --CCCCCCCcCCCCCCCCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCccCccCCCCcce
Q 000604 1094 --ASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNV 1171 (1398)
Q Consensus 1094 --~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~~~~~gGKSgs 1171 (1398)
..-++-+-.|+.++..|.+++|..+.. .|+|++|||++|+.||++||+++. |+.++++|..|...||||||
T Consensus 306 irvtlsr~e~iM~~~tdth~~e~~~eg~~------~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~~~GKSGS 378 (612)
T COG5253 306 IRVTLSRIEEIMIKKTDTHLNEQFEEGLY------EFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWESNGGKSGS 378 (612)
T ss_pred hHHHHHHHHHHhcCCcCccchhhccccce------eeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheeccCCCcccc
Confidence 000001123678889999999998755 899999999999999999999885 99999999999999999999
Q ss_pred eEEeeccCceEecccCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhheeeeEEEEeee-cCCCeeEEEEEEEeecccCC
Q 000604 1172 FFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKH-LKGGKETKIDLMVMENLFFR 1250 (1398)
Q Consensus 1172 ~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~-~~~g~~~~~~~iVMeNlf~~ 1250 (1398)
|||||.|.|||||||++.|+..|..++-.|+.|+..| +.|+||||||+|+|+++. ...++..|+||||||||||+
T Consensus 379 ff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~n----p~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiVMeNlf~~ 454 (612)
T COG5253 379 FFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLFN----PLTLLCKIFGFYRVKSRSSISSSKSRKIYFIVMENLFYP 454 (612)
T ss_pred eEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHcC----chHHHHHHhceeEEeccccccccccceeEEEEecccCCC
Confidence 9999999999999999999966655555555555543 669999999999999986 45677899999999999999
Q ss_pred CCceeEeeCCCcccccccCCCCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCcceeeeecc
Q 000604 1251 RSISRVYDLKGSARSRYNTDTTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE 1330 (1398)
Q Consensus 1251 ~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~ 1330 (1398)
+.++++|||||||+||++..+++...||+|+|.++.++++|+.+....|+.|+.|||+|+.||+++||||||||||||.+
T Consensus 455 ~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSllVgi~~~ 534 (612)
T COG5253 455 HGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDE 534 (612)
T ss_pred CCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeEEEEeccc
Confidence 88999999999999999999888999999998888888899999999999999999999999999999999999999999
Q ss_pred cceeeEe-eeecccc-cchhhhHhHHhhhhcccCCC-CCCCCcccChhHHHHHHHHHHHhccccCCCCCC
Q 000604 1331 RKELVLG-IIDFMRQ-YTWDKHLETWVKASGILGGP-KNASPTIISPKQYKKRFRKAMTSYFLTVPDQWS 1397 (1398)
Q Consensus 1331 ~~~~~~G-IID~L~~-yt~~KklE~~~K~~~~~gg~-~~~~~T~v~P~~Y~~RF~~~m~~~f~~~p~~W~ 1397 (1398)
+.++.|| |||++|+ |||||++|.|+|..+..|+. +...||+|+|.+|++||++||+.|+.++|+.|+
T Consensus 535 ~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~ 604 (612)
T COG5253 535 REEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKT 604 (612)
T ss_pred hhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhcccchhh
Confidence 9999999 9999999 99999999999999766643 456899999999999999999999999999997
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=5.8e-68 Score=607.93 Aligned_cols=255 Identities=48% Similarity=0.847 Sum_probs=235.6
Q ss_pred ceeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCccCccC-CCCcceeEEeeccCceEecccCHHHHHHHHHHHHHHHH
Q 000604 1125 KVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQ-GGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFK 1203 (1398)
Q Consensus 1125 ~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~~~~~-gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~ 1203 (1398)
...|+|++|+|.+|++||++||+++++|+.||+++..|..+ ||||||+||+|.|+|||||||++.|++.|+++||+||+
T Consensus 54 ~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~ 133 (313)
T cd00139 54 SADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYE 133 (313)
T ss_pred CccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988765 99999999999999999999999999999999999999
Q ss_pred HHHhcCCCCC-CchhhheeeeEEEEeeecCCCeeEEEEEEEeecccCC-CCceeEeeCCCcccccccCCC--CCCccccc
Q 000604 1204 YLTDSLNSRS-PTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFR-RSISRVYDLKGSARSRYNTDT--TGTNKVLL 1279 (1398)
Q Consensus 1204 y~~~~~~~~~-~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~ 1279 (1398)
||.+| + +|||+||||+|+|++++ |...++|||||+|||++ ..|+++||||||+++|.+.+. .....|||
T Consensus 134 ~~~~n----~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vlK 206 (313)
T cd00139 134 YITQN----PQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVLK 206 (313)
T ss_pred HHHhC----CCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCccccc
Confidence 99987 5 79999999999999864 22356899999999998 799999999999999998763 34678999
Q ss_pred chhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCcceeeeecccceeeEeeeecccccchhhhHhHHhhhhc
Q 000604 1280 DMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEERKELVLGIIDFMRQYTWDKHLETWVKASG 1359 (1398)
Q Consensus 1280 D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~~~~~~GIID~L~~yt~~KklE~~~K~~~ 1359 (1398)
|.||++.. +.+|+|+++.|+.|++||++||+||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|+++
T Consensus 207 D~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~~ 285 (313)
T cd00139 207 DLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSLG 285 (313)
T ss_pred hhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHhc
Confidence 99999976 57999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCCCCCCCcccChhHHHHHHHHHHHhccc
Q 000604 1360 ILGGPKNASPTIISPKQYKKRFRKAMTSYFL 1390 (1398)
Q Consensus 1360 ~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~f~ 1390 (1398)
..+ +..||||+|++|++||++||++||+
T Consensus 286 ~~~---~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 286 HDG---GKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred cCC---CCCcceECHHHHHHHHHHHHHHhcC
Confidence 322 2579999999999999999999995
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=7.2e-67 Score=606.35 Aligned_cols=264 Identities=42% Similarity=0.725 Sum_probs=239.7
Q ss_pred CCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCcc-CccCCCCcceeEEeeccCceEeccc
Q 000604 1108 SPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK-WSAQGGKSNVFFAKSLDERFIIKQV 1186 (1398)
Q Consensus 1108 ~~~~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~-~~~~gGKSgs~F~~T~D~rfiiK~i 1186 (1398)
..|.+++|..... .|+|++|+|.+|++||+++|+++++|++||++|.. |..+||||||+||+|.|+|||||||
T Consensus 16 ~~~~~~~~~~~~~------~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti 89 (342)
T smart00330 16 PGHLELTPSHGSA------DFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTV 89 (342)
T ss_pred CCcccccCCCCCc------cEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEec
Confidence 4556677776654 89999999999999999999999999999999986 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhheeeeEEEEeeecCCCeeEEEEEEEeecccC-CCCceeEeeCCCcccc
Q 000604 1187 KKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFF-RRSISRVYDLKGSARS 1265 (1398)
Q Consensus 1187 s~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~-~~~i~~~yDLKGS~~~ 1265 (1398)
++.|++.|+++||.||+||.+| ++|||+||||+|+|.++ +++..++|||||+|||+ +..|+++||||||+++
T Consensus 90 ~~~E~~~l~~~lp~Y~~~~~~n----~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~ 162 (342)
T smart00330 90 SKSEIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRG 162 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC----CCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCC
Confidence 9999999999999999999986 68999999999999975 34356799999999999 5799999999999999
Q ss_pred cccCC-CCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCcceeeeecccc------------
Q 000604 1266 RYNTD-TTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEERK------------ 1332 (1398)
Q Consensus 1266 R~~~~-~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~~------------ 1332 (1398)
|.+.. ......||||.||.+. .+.+|+|+++.|+.|++||++||.||+++||||||||||||....
T Consensus 163 R~~~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~ 241 (342)
T smart00330 163 READKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVY 241 (342)
T ss_pred CCcCccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhcccccccc
Confidence 99865 2345789999999986 567999999999999999999999999999999999999986422
Q ss_pred ------------------------------------------------eeeEeeeecccccchhhhHhHHhhhhcccCCC
Q 000604 1333 ------------------------------------------------ELVLGIIDFMRQYTWDKHLETWVKASGILGGP 1364 (1398)
Q Consensus 1333 ------------------------------------------------~~~~GIID~L~~yt~~KklE~~~K~~~~~gg~ 1364 (1398)
+|++|||||||+|||+||+|||+|+.+. +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~-~-- 318 (342)
T smart00330 242 GSDESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGH-D-- 318 (342)
T ss_pred cccccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhcc-C--
Confidence 7999999999999999999999999732 2
Q ss_pred CCCCCcccChhHHHHHHHHHHHhcc
Q 000604 1365 KNASPTIISPKQYKKRFRKAMTSYF 1389 (1398)
Q Consensus 1365 ~~~~~T~v~P~~Y~~RF~~~m~~~f 1389 (1398)
+..||||+|++|++||++||++||
T Consensus 319 -~~~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 319 -GKTISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred -CCCcceECHHHHHHHHHHHHHhhC
Confidence 357999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=4.6e-59 Score=532.22 Aligned_cols=251 Identities=35% Similarity=0.599 Sum_probs=225.7
Q ss_pred eeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCccCc--cCCCCcceeEEeeccCceEecccCHHHHHHHHHHHHHHHH
Q 000604 1126 VKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWS--AQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFK 1203 (1398)
Q Consensus 1126 ~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~~~--~~gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~ 1203 (1398)
..|++|+|||.+||.||++|||++.||+.||++..... +++|||||+||.|.|+|||||||.++|.+.|+++||.||+
T Consensus 96 ~~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~ 175 (420)
T KOG0229|consen 96 SDFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQ 175 (420)
T ss_pred cccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHH
Confidence 36889999999999999999999999999999986654 7779999999999999999999999999999999999999
Q ss_pred HHHhcCCCCCCchhhheeeeEEEEeeecCCCeeEEEEEEEeecccCCC-CceeEeeCCCcccccccCCC--CCCcccccc
Q 000604 1204 YLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDT--TGTNKVLLD 1280 (1398)
Q Consensus 1204 y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D 1280 (1398)
|+.++ ++.|||+||||+|+|+.. +|+ ++|||||+|||... .||++||||||+++|.+.+. .++..+|||
T Consensus 176 ~v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlKD 247 (420)
T KOG0229|consen 176 HVVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLKD 247 (420)
T ss_pred HHHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCcccc
Confidence 99985 456999999999999874 454 58999999999985 99999999999999998653 256789999
Q ss_pred hhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCcceeeeecc------------------------------
Q 000604 1281 MNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE------------------------------ 1330 (1398)
Q Consensus 1281 ~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~------------------------------ 1330 (1398)
.||++. ...|++++..++.|+.||++||+||++.+|||||||||||..
T Consensus 248 lDf~~~--~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 325 (420)
T KOG0229|consen 248 LDFLNE--GQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPED 325 (420)
T ss_pred chhhcc--CceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCccccccccccccccc
Confidence 999983 568999999999999999999999999999999999999731
Q ss_pred ---------------------------------------cceeeEeeeecccccchhhhHhHHhhhhcccCCCCCCCCcc
Q 000604 1331 ---------------------------------------RKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTI 1371 (1398)
Q Consensus 1331 ---------------------------------------~~~~~~GIID~L~~yt~~KklE~~~K~~~~~gg~~~~~~T~ 1371 (1398)
+..||+||||+||.|+..||+||.+|+. ..++ ..+|+
T Consensus 326 ~~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~d~--~tIS~ 401 (420)
T KOG0229|consen 326 VLTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QHDP--DTISA 401 (420)
T ss_pred cCCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--ccCC--ceeec
Confidence 0137999999999999999999999997 5433 56999
Q ss_pred cChhHHHHHHHHHHHhccc
Q 000604 1372 ISPKQYKKRFRKAMTSYFL 1390 (1398)
Q Consensus 1372 v~P~~Y~~RF~~~m~~~f~ 1390 (1398)
|+|++|++||++||.+.|.
T Consensus 402 v~P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 402 VDPKFYAKRFLDFISNIFF 420 (420)
T ss_pred cCHHHHHHHHHHHHHhhcC
Confidence 9999999999999999874
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=1.4e-56 Score=504.15 Aligned_cols=222 Identities=36% Similarity=0.629 Sum_probs=155.1
Q ss_pred HhccC--ccCccCCCCcceeEEeeccCceEecccCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhheeeeEEEEeeecC
Q 000604 1155 SLSRS--RKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLK 1232 (1398)
Q Consensus 1155 SL~~~--~~~~~~gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~ 1232 (1398)
|||.+ ..|.+++|||||+||+|.|+|||||||+++|++.|+++||+||+||.++ +.|+|+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~----~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSEN----PNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHT----TTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhC----cCchHHHHHHHheeccc---
Confidence 67653 6789999999999999999999999999999999999999999999997 55999999999999543
Q ss_pred CCeeEEEEEEEeecccCC-CCceeEeeCCCcccccccCCC--CCCcccccchhhhhhccCCccccChHHHHHHHHHHHhc
Q 000604 1233 GGKETKIDLMVMENLFFR-RSISRVYDLKGSARSRYNTDT--TGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWND 1309 (1398)
Q Consensus 1233 ~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~D 1309 (1398)
+| ..+++||||+|+|++ ..|+++||||||+++|.+.+. .....||||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 467899999999998 799999999999999998652 2357899999999864 69999999999999999999
Q ss_pred ccccccCCcccCcceeeee------------------------cccceeeEeeeecccccchhhhHhHHhhhhcccCCCC
Q 000604 1310 TSFLASVDVMDYSLLVGVD------------------------EERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPK 1365 (1398)
Q Consensus 1310 t~FL~~~~imDYSLLvgi~------------------------~~~~~~~~GIID~L~~yt~~KklE~~~K~~~~~gg~~ 1365 (1398)
|.||+++|||||||||||+ ..+.+|++|||||||+|||+|++|+++|..+..+
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~--- 228 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCD--- 228 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT-------------------
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcC---
Confidence 9999999999999999999 3567899999999999999999999999974332
Q ss_pred CCCCcccChhHHHHHHHHHHHhcc
Q 000604 1366 NASPTIISPKQYKKRFRKAMTSYF 1389 (1398)
Q Consensus 1366 ~~~~T~v~P~~Y~~RF~~~m~~~f 1389 (1398)
+..+|||+|++|++||++||++||
T Consensus 229 ~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 229 GQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --SSS---HHHHHHHHHHHHHHH-
T ss_pred CCCCcccCHHHHHHHHHHHHHHhC
Confidence 357999999999999999999998
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=1.8e-55 Score=545.53 Aligned_cols=264 Identities=29% Similarity=0.451 Sum_probs=227.3
Q ss_pred CceEEEEcCCCC--CCC-cceeEEEEEcCHHHHHHHHHHcCCChHHHHHHhccCcc--CccCCCCcceeEEeeccCceEe
Q 000604 1109 PHLTISFGDESS--TAG-GKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK--WSAQGGKSNVFFAKSLDERFII 1183 (1398)
Q Consensus 1109 ~~~~~~f~~~~~--~~~-~~~~~~~~~y~p~~F~~LR~~~~~~~~~~~~SL~~~~~--~~~~gGKSgs~F~~T~D~rfii 1183 (1398)
..+++.|...+. +++ ....|+|++|+|.+|+.||++|||++++|+.||+.+.. +.+++|||||+||+|.|+||||
T Consensus 382 ~~~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiI 461 (765)
T PLN03185 382 ASFWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMI 461 (765)
T ss_pred EEEEEEcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEE
Confidence 444555655442 111 23479999999999999999999999999999987644 4589999999999999999999
Q ss_pred cccCHHHHHHHHHHHHHHHHHHHhcCCCCCCchhhheeeeEEEEeeecCCCeeEEEEEEEeecccCC-CCceeEeeCCCc
Q 000604 1184 KQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFR-RSISRVYDLKGS 1262 (1398)
Q Consensus 1184 K~is~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS 1262 (1398)
|||++.|+++|+++||+||+||..| ++|||+||||+|+|+.. +|+ +++||||+|||++ ..|+++||||||
T Consensus 462 KTI~k~E~~~l~~iLp~Y~~hv~~n----~~TLL~kf~Gl~~i~~~---~g~--k~~fvVM~NlF~~~~~I~~~yDLKGS 532 (765)
T PLN03185 462 KTLRKSEVKVLLRMLPDYHHHVKTY----ENTLITKFFGLHRIKPS---SGQ--KFRFVVMGNMFCTELRIHRRFDLKGS 532 (765)
T ss_pred EecCHHHHHHHHHHHHHHHHHHhhC----CCcchhhheEEEEEEeC---CCc--EEEEEEEecCCCCCCccceEEECCCC
Confidence 9999999999999999999999875 67999999999999753 343 5899999999997 589999999999
Q ss_pred ccccccCCC-CCCcccccchhhhhhccCCccccChHHHHHHHHHHHhcccccccCCcccCcceeeeeccc----------
Q 000604 1263 ARSRYNTDT-TGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEER---------- 1331 (1398)
Q Consensus 1263 ~~~R~~~~~-~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~---------- 1331 (1398)
+++|.+... ...+.||||.||. .+|+|+++.|+.|++||++||.||+++||||||||||||...
T Consensus 533 t~~R~~~k~~~~~~~tlKDlD~~-----~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~ 607 (765)
T PLN03185 533 SLGRSADKVEIDENTTLKDLDLN-----YSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPY 607 (765)
T ss_pred CCCCCCccccccCCCeeeecCcC-----ceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhcccccc
Confidence 999997532 2356899999993 379999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000604 1332 -------------------------------------------------------------------------------- 1331 (1398)
Q Consensus 1332 -------------------------------------------------------------------------------- 1331 (1398)
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~m 687 (765)
T PLN03185 608 SRSITADGLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNM 687 (765)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccC
Confidence
Q ss_pred -----------------------ceeeEeeeecccccchhhhHhHHhhhhcccCCCCCCCCcccChhHHHHHHHHHHHhc
Q 000604 1332 -----------------------KELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKKRFRKAMTSY 1388 (1398)
Q Consensus 1332 -----------------------~~~~~GIID~L~~yt~~KklE~~~K~~~~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~ 1388 (1398)
-.||+|||||||.|+..|||||++|++ .. +...||+|+|+.|++||++||.+.
T Consensus 688 para~~~~~~~~~~~~~~~e~~d~~~~~giidilq~y~~~k~~eh~~k~~--~~--~~~~is~v~p~~y~~rf~~f~~~~ 763 (765)
T PLN03185 688 PARAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKIEHAYKSL--QF--DSLSISAVDPTFYSKRFLEFIQKV 763 (765)
T ss_pred chhhhcccccccccccccCcccceEEEEEEEEeecccchhHHHHHHHhhh--cc--CCCceeccChHHHHHHHHHHHHhh
Confidence 027899999999999999999999997 33 245799999999999999999999
Q ss_pred cc
Q 000604 1389 FL 1390 (1398)
Q Consensus 1389 f~ 1390 (1398)
|+
T Consensus 764 f~ 765 (765)
T PLN03185 764 FP 765 (765)
T ss_pred cC
Confidence 84
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.6e-48 Score=439.90 Aligned_cols=259 Identities=57% Similarity=0.916 Sum_probs=242.0
Q ss_pred HHHHHHHHHhCCcccccCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccC
Q 000604 36 ALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIK 115 (1398)
Q Consensus 36 al~~qLl~~~~i~~~sk~~~~~w~~~ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a 115 (1398)
+++.|||..+++. +.+.|.+.|++|+++|+..+.++...++.+|+.++|+|+|++||++.||++++|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 6889999999998 56799999999999999999764333457998678999999999999999999999999999
Q ss_pred CCCCcceecCCcEEEEeecccccccccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEE
Q 000604 116 HKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL 195 (1398)
Q Consensus 116 ~k~Mp~~i~nprIlll~~~Le~~r~~~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~v 195 (1398)
|++||++++||||+|++|||||+++++++.+++.+++ +|++|++++|++|+++|||||||+|+|+++|++||.++||++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~-~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~ 155 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVIL-QEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITL 155 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEE
Confidence 9999999999999999999999999999999999999 999999999999999999999999999999999999999999
Q ss_pred EEccChHHHHHHHHHhCCeEccccc-cCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEecc
Q 000604 196 VLNVKRPLLERIARCTGALITPSID-NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRG 274 (1398)
Q Consensus 196 v~~Vk~~~LerIar~TGA~Ii~sid-~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG 274 (1398)
+++|++.+|+|||+||||+|+++++ .++++.||+|+.|++++++++ + ...++|+||+||+.+.+|||+|||
T Consensus 156 v~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~------~--~~~~~~~~~~~~~~~~~~TIlLRG 227 (261)
T cd03334 156 VLNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEE------H--GRSKTLMFFEGCPKELGCTILLRG 227 (261)
T ss_pred EEecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCc------C--CCceeEEEEecCCCCceeEEEEEC
Confidence 9999999999999999999999954 889999999999999999862 1 123799999999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCC
Q 000604 275 KCREELKKVKHVVQYAVFAAYHLSLETSFLADEG 308 (1398)
Q Consensus 275 ~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggG 308 (1398)
++.++|+|+||+++||++++|++++|.+++.+.|
T Consensus 228 ~t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 228 GDLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 9999999999999999999999999999988754
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.2e-47 Score=473.66 Aligned_cols=297 Identities=27% Similarity=0.433 Sum_probs=273.4
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHH------------------hCCcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~ls~ 64 (1398)
|++|+|||+||++|..+++.|+||..|++||.+|+...+..+ +.+++.+|. ...|.+.|++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~~ls~ 169 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKF-VSRWSDLMCD 169 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhcccc-chhHHHHHHH
Confidence 789999999999999999999999999999999987644433 333444443 3579999999
Q ss_pred HHHHHHhhcCCCCCC-CCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeeccccccccc-
Q 000604 65 IAWQAANFVKPDTSR-GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN- 142 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~-~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~- 142 (1398)
|+++|+..+.++... ...+|+.+||+|+|++||+++||++++|++|+|+++|++||++++||||+|+++||++++.+.
T Consensus 170 l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~ 249 (525)
T TIGR02344 170 LALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQ 249 (525)
T ss_pred HHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccccc
Confidence 999999999875322 246888788999999999999999999999999999999999999999999999999998874
Q ss_pred ------ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 143 ------QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 143 ------~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
+..+++++++ +|++|+++++++|++.||+||+|+++|+++|+++|.++||++++++++.+|+|||++|||+++
T Consensus 250 ~~i~i~~~~~~~~~l~-~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii 328 (525)
T TIGR02344 250 TNVEIMKEEDWNRILQ-MEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIV 328 (525)
T ss_pred ceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEe
Confidence 3689999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000604 217 PSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 295 (1398)
Q Consensus 217 ~sid~l~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~ 295 (1398)
+++++++++.||+ |+.|+++++++ ++|++|+||+.+.+|||+|||+++.+|+|+||+++||+++++
T Consensus 329 ~~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk 395 (525)
T TIGR02344 329 NRPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVAR 395 (525)
T ss_pred cchhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999 99999999986 589999999999999999999999999999999999999999
Q ss_pred HhhccCeeeeCCCcccccc
Q 000604 296 HLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 296 ~~~le~~~l~ggGa~e~~~ 314 (1398)
++++++.+|+||||+|+++
T Consensus 396 ~~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 396 NVLLEPKLLPGGGATEMAV 414 (525)
T ss_pred HHHhCCCcccCCCHHHHHH
Confidence 9999999999999999854
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=3.3e-45 Score=453.71 Aligned_cols=297 Identities=23% Similarity=0.339 Sum_probs=271.3
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHH------------------HHhCCcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELL------------------RAEGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl------------------~~~~i~~~sk~~~~~w~~~ls~ 64 (1398)
|++++|||+|++++..++++|+||..|+.||.+|+...+. ..+.+++.+|...+.|.+.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 7899999999999999999999999999999999765433 3444455444321468899999
Q ss_pred HHHHHHhhcCCCCCCCC-CCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc--
Q 000604 65 IAWQAANFVKPDTSRGG-SMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~~-~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
|+++|+..+.+...++. .+|+ ++|+|+|++||++.||++++|++|++++.|++||++++||||++++|+|||++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 249 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEID 249 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccc
Confidence 99999999975321222 4788 8999999999999999999999999999999999999999999999999999986
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
++..+++++++ +|++|++++|++|++.||+||+++++|++.|+++|.++||++++++++.+|+|||++|||+++
T Consensus 250 ~~~~i~~~~~~~~~l~-~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii 328 (519)
T TIGR02339 250 AKIRITDPDQIKKFLD-QEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIV 328 (519)
T ss_pred eEEEECCHHHHHHHHH-HHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEe
Confidence 45888999999 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000604 217 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 296 (1398)
Q Consensus 217 ~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~ 296 (1398)
++++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||+++.+|+|+||+++||++++++
T Consensus 329 ~~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~ 395 (519)
T TIGR02339 329 SSIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVAS 395 (519)
T ss_pred CchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999986 5899999999999999999999999999999999999999999
Q ss_pred hhccCeeeeCCCcccccc
Q 000604 297 LSLETSFLADEGATLPKM 314 (1398)
Q Consensus 297 ~~le~~~l~ggGa~e~~~ 314 (1398)
++.++++|+||||+|+.+
T Consensus 396 ~~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 396 ALEDGKVVAGGGAVEIEL 413 (519)
T ss_pred HhcCCCEeeCCCHHHHHH
Confidence 999999999999999854
No 11
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.2e-46 Score=421.74 Aligned_cols=296 Identities=25% Similarity=0.428 Sum_probs=275.0
Q ss_pred CCcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHh------------------CCcccccCChhhHHHHHH
Q 000604 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE------------------GIKLGKEDSEEDWLGIIT 63 (1398)
Q Consensus 2 ~~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~------------------~i~~~sk~~~~~w~~~ls 63 (1398)
-|||++||||+|..+..++++++||..|+..|.+||-..+.... +.++.+|. ...|.+.+.
T Consensus 93 ttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~-~~~~~~~~~ 171 (527)
T KOG0364|consen 93 TTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKF-NSRWSDLIC 171 (527)
T ss_pred ceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhh-hhhhcchhh
Confidence 38999999999999999999999999999999999876554443 34444443 379999999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccC
Q 000604 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~ 143 (1398)
.++++|+..|..+ .|..+|+..|+|+.|||||.+.+|++++||.+.|++.|..|.+.|+||||.||+|||||.+.+++
T Consensus 172 ~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSq 249 (527)
T KOG0364|consen 172 NLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQ 249 (527)
T ss_pred hHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccc
Confidence 9999999999875 45579999999999999999999999999999999999999999999999999999999998754
Q ss_pred -------hhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 144 -------LASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 144 -------~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
-.++..+++ -|+||++.+...|+.+.||||+++|||+++|++||.++||++++++++.|..||||++||.|+
T Consensus 250 tnve~~~eed~~r~Lq-ieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv 328 (527)
T KOG0364|consen 250 TNVEIVKEEDFTRILQ-IEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIV 328 (527)
T ss_pred cceeeeechhHHHHHH-hhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceec
Confidence 567888899 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000604 217 PSIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 295 (1398)
Q Consensus 217 ~sid~l~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~ 295 (1398)
+..++|.+...|+ |++|++++++++ .|.||..|..+++|||+|||++.++|+|++|.++||+.+++
T Consensus 329 ~rpedl~e~dvGt~agLf~~kK~gde-------------yf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~var 395 (527)
T KOG0364|consen 329 NRPEDLPERDVGTGAGLFEVKKIGDE-------------YFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVAR 395 (527)
T ss_pred cChhhCchhccCcccceeeeeccCch-------------hhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHH
Confidence 9999999988995 999999999985 79999999999999999999999999999999999999999
Q ss_pred HhhccCeeeeCCCcccccc
Q 000604 296 HLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 296 ~~~le~~~l~ggGa~e~~~ 314 (1398)
|.+.++++++||||+|+..
T Consensus 396 n~ii~PklvPGGGAtEMAv 414 (527)
T KOG0364|consen 396 NVIINPKLVPGGGATEMAV 414 (527)
T ss_pred HhccCCcccCCccHHHHHH
Confidence 9999999999999999854
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.3e-44 Score=448.63 Aligned_cols=296 Identities=18% Similarity=0.257 Sum_probs=269.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHH--------------------hCCcccccCChhhHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA--------------------EGIKLGKEDSEEDWLGII 62 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~--------------------~~i~~~sk~~~~~w~~~l 62 (1398)
|++|+||||||+++..+++.|+||..|+.||++|+...+..+ +.+++++|. ...|.+.|
T Consensus 98 tt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~-~~~~~~~~ 176 (526)
T cd03339 98 TGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKI-VSRCHRQF 176 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccc-hhhHHHHH
Confidence 789999999999999999999999999999999987644433 333444442 35789999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-
Q 000604 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 63 s~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~- 141 (1398)
++++++|+..+... .+..+|+ ++|+|+|++||++.||++++|++|+++++|+.||+.++||||+|++++||+++.+
T Consensus 177 s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~ 253 (526)
T cd03339 177 AEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 253 (526)
T ss_pred HHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcccc
Confidence 99999999988642 2235676 7899999999999999999999999999999999999999999999999999875
Q ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
+.+.+++.+++ +|+++++.++++|++.|++||+++++|++.|++||.++||+++++++..+|+|||++|||++
T Consensus 254 ~~~~~i~s~~~~~~~~~-~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~i 332 (526)
T cd03339 254 KHKLDITSVEDYKKLQE-YEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRI 332 (526)
T ss_pred ceEEEeCCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEE
Confidence 34788999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000604 216 TPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 295 (1398)
Q Consensus 216 i~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~ 295 (1398)
+++++++++..||+|+.|+++.++.+ .++|+||+||+.+.+|||+|||+|+.+|+|+||+++||+++++
T Consensus 333 i~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~ 401 (526)
T cd03339 333 VPRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVR 401 (526)
T ss_pred ecchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999752 2689999999999999999999999999999999999999999
Q ss_pred HhhccCeeeeCCCcccccc
Q 000604 296 HLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 296 ~~~le~~~l~ggGa~e~~~ 314 (1398)
+++.++++||||||+|+..
T Consensus 402 ~~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 402 NLIRDNRIVYGGGAAEISC 420 (526)
T ss_pred HHhhCCCEEeCCCHHHHHH
Confidence 9999999999999999854
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=4.8e-44 Score=443.64 Aligned_cols=296 Identities=22% Similarity=0.332 Sum_probs=270.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHh------------------CCcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE------------------GIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~------------------~i~~~sk~~~~~w~~~ls~ 64 (1398)
|++++|||+|++++..++++|+||..|+.||++|+...+..+. .+++.+|. ...|.+.|++
T Consensus 90 tt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~-~~~~~~~l~~ 168 (517)
T cd03343 90 TTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKG-AEAAKDKLAD 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccc-hhhHHHHHHH
Confidence 6889999999999999999999999999999999876544433 33444443 2568899999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc---
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~--- 141 (1398)
|+++|+..+.++......+|+ ++|+|+|++||+++||++++|++|++++.|+.||+.++||||++++++|||++.+
T Consensus 169 l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~ 247 (517)
T cd03343 169 LVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247 (517)
T ss_pred HHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccce
Confidence 999999999764212235888 8999999999999999999999999999999999999999999999999999986
Q ss_pred ----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcc
Q 000604 142 ----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~ 217 (1398)
++..+++++++ +|++|+++++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||++++
T Consensus 248 ~~~i~s~~~~~~~~~-~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~ 326 (517)
T cd03343 248 KIRITSPDQLQAFLE-QEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVT 326 (517)
T ss_pred eEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEec
Confidence 45788999999 9999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHh
Q 000604 218 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 218 sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++++..||+|+.|+++++++ ++|++|+||..+.+|||+|||+++.+++|+||+++||+++++++
T Consensus 327 ~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~ 393 (517)
T cd03343 327 NIDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADA 393 (517)
T ss_pred chhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 48999999999999999999999999999999999999999999
Q ss_pred hccCeeeeCCCcccccc
Q 000604 298 SLETSFLADEGATLPKM 314 (1398)
Q Consensus 298 ~le~~~l~ggGa~e~~~ 314 (1398)
+.++++||||||+|+.+
T Consensus 394 ~~~~~vvpGGG~~e~~l 410 (517)
T cd03343 394 LEDGKVVAGGGAVEIEL 410 (517)
T ss_pred HhCCCeeeCCCHHHHHH
Confidence 99999999999999854
No 14
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.8e-44 Score=399.53 Aligned_cols=292 Identities=19% Similarity=0.306 Sum_probs=267.8
Q ss_pred CCcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHH----------------------HhCCcccccCChhhHH
Q 000604 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLR----------------------AEGIKLGKEDSEEDWL 59 (1398)
Q Consensus 2 ~~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~----------------------~~~i~~~sk~~~~~w~ 59 (1398)
-||||+||||+|++++.+++.|+||.-|+.+|++|...++.+ .+.+++++|. ....+
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl-I~~ek 172 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL-IRQEK 172 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh-hhhhH
Confidence 389999999999999999999999999999999997665444 4455555554 24667
Q ss_pred HHHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCC---CcceecCCcEEEEeeccc
Q 000604 60 GIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR---MTSQYRNPRLLILGGALE 136 (1398)
Q Consensus 60 ~~ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~---Mp~~i~nprIlll~~~Le 136 (1398)
++|++++|+|+..+.. ..|. +.|.|||++||++.||.+|+||.|.|.+++.+ .|+++.||||++|+-.||
T Consensus 173 ~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELE 245 (543)
T KOG0361|consen 173 EFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELE 245 (543)
T ss_pred HHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeee
Confidence 9999999999998863 3455 88999999999999999999999999999864 699999999999999999
Q ss_pred ccccc-------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHH
Q 000604 137 YQRVP-------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIAR 209 (1398)
Q Consensus 137 ~~r~~-------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar 209 (1398)
..... ....+++.+++ .||..|.+++++|+..|+||||..-.|.++|.+||++++|.|+.||..+||.|+..
T Consensus 246 lKaEkdNAEiRv~~v~eyQ~iVD-AEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~ 324 (543)
T KOG0361|consen 246 LKAEKDNAEIRVDNVEEYQAIVD-AEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQ 324 (543)
T ss_pred ecccccCceeecCCHHHHHHHHh-HHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHH
Confidence 86443 46899999999 99999999999999999999999999999999999999999999999999999999
Q ss_pred HhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHH
Q 000604 210 CTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 289 (1398)
Q Consensus 210 ~TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~d 289 (1398)
++|+.|+++..++.+..||+|+.|+++++|.+ +|-+|+||+..+.||++|||+-++.++|++|++||
T Consensus 325 acGGsi~tt~~~i~~~~LG~C~~FeE~QvG~e-------------RyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHD 391 (543)
T KOG0361|consen 325 ACGGSIQTTVSDIKEEVLGTCALFEERQVGGE-------------RYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHD 391 (543)
T ss_pred hcCcchhhhhhhcchhhcchhhhHHHHhhcch-------------hhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhh
Confidence 99999999999999999999999999999874 79999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeeeeCCCccccccc
Q 000604 290 AVFAAYHLSLETSFLADEGATLPKMR 315 (1398)
Q Consensus 290 al~v~~~~~le~~~l~ggGa~e~~~~ 315 (1398)
|++++++++++.++|+||||+|+++.
T Consensus 392 AImIVrralkn~~vVaGGGaiEMElS 417 (543)
T KOG0361|consen 392 AIMIVRRALKNDSVVAGGGAIEMELS 417 (543)
T ss_pred HHHHHHHHhccCcEeeCCceeeehHH
Confidence 99999999999999999999999753
No 15
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=1.5e-43 Score=439.41 Aligned_cols=289 Identities=20% Similarity=0.282 Sum_probs=265.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc---------------------ccccCChhhHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK---------------------LGKEDSEEDWLGI 61 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~---------------------~~sk~~~~~w~~~ 61 (1398)
|++|+||||||++|..++++|+||..|+.||++|+...+..+..++ +++|. ...|.+.
T Consensus 102 TtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~-~~~~~~~ 180 (533)
T PTZ00212 102 TSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKL-LTVEKDH 180 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccc-cchhHHH
Confidence 7899999999999999999999999999999999876555443333 33342 2568999
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc
Q 000604 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1398)
Q Consensus 62 ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~ 141 (1398)
|++++++|+..+.+ ..|+ ++|+|+|++||+++||++++|+|+++++.| .||++++||||+|++++|||++.+
T Consensus 181 l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~ 252 (533)
T PTZ00212 181 FAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIK 252 (533)
T ss_pred HHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCccc
Confidence 99999999998864 2566 789999999999999999999999999987 589999999999999999999986
Q ss_pred --------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCC
Q 000604 142 --------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 213 (1398)
Q Consensus 142 --------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA 213 (1398)
+++.++..+.+ +|++++++++.+|++.||++|+++++|++.|+++|.++||+++++++..+|+|||++|||
T Consensus 253 ~~~~~~~i~~~~~~~~l~~-~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa 331 (533)
T PTZ00212 253 IYGAKVKVDSMEKVAEIEA-AEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGA 331 (533)
T ss_pred ccCceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCC
Confidence 56788888888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHH
Q 000604 214 LITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFA 293 (1398)
Q Consensus 214 ~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v 293 (1398)
+++++++.+++..||+|+.|+++.+++ ++|++|+||..+.+|||+|||+|+.+|+|+||+++||+++
T Consensus 332 ~iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~v 398 (533)
T PTZ00212 332 EIVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCV 398 (533)
T ss_pred EEeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHH
Confidence 999999999999999999999998875 5899999999999999999999999999999999999999
Q ss_pred HHHhhccCeeeeCCCcccccc
Q 000604 294 AYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 294 ~~~~~le~~~l~ggGa~e~~~ 314 (1398)
+++++.++++|+||||+|..+
T Consensus 399 v~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 399 LSQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred HHHHhhCCCEeeCCCHHHHHH
Confidence 999999999999999999854
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-43 Score=436.51 Aligned_cols=296 Identities=19% Similarity=0.267 Sum_probs=269.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC--------------------CcccccCChhhHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG--------------------IKLGKEDSEEDWLGII 62 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~--------------------i~~~sk~~~~~w~~~l 62 (1398)
|++++||||||++|..+++.|+||..|++||..|+...+..+.. +++.+|. ...|.+.|
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~-~~~~~~~l 180 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKI-VSKCHRRF 180 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccch-hhHHHHHH
Confidence 78999999999999999999999999999999997654443333 3333332 25689999
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-
Q 000604 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 63 s~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~- 141 (1398)
++++++|+..+... ....+|+ ++|+|+|++||+++||++++|++|++++.|..||+.++||||+|++++||+++.+
T Consensus 181 s~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~ 257 (532)
T TIGR02343 181 AEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 257 (532)
T ss_pred HHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecccccccc
Confidence 99999999988642 2236888 8999999999999999999999999999999999999999999999999999885
Q ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
+...+++.+++ +|+++++.++++|++.|++||+++++|++.|++||.++||.++++++..+|+|||++|||++
T Consensus 258 ~~~~~i~~~~~~~~~~~-~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~ 336 (532)
T TIGR02343 258 KHKLDISSVEEYKKLQK-YEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRI 336 (532)
T ss_pred ceeEEeCCHHHHHHHHH-HHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEE
Confidence 34678888899 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000604 216 TPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 295 (1398)
Q Consensus 216 i~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~ 295 (1398)
+++++++++..||+|+.|+++.++.+ .+++++|+||+.+..|||+|||+|+.+++|+||+++||+++++
T Consensus 337 i~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~ 405 (532)
T TIGR02343 337 VPRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVR 405 (532)
T ss_pred ecccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999862 1489999999999999999999999999999999999999999
Q ss_pred HhhccCeeeeCCCcccccc
Q 000604 296 HLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 296 ~~~le~~~l~ggGa~e~~~ 314 (1398)
+++.++.+|+||||+|+++
T Consensus 406 ~~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 406 NLIKNSRIVYGGGAAEISC 424 (532)
T ss_pred HHHhCCCEEeCcCHHHHHH
Confidence 9999999999999999854
No 17
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.1e-43 Score=436.55 Aligned_cols=296 Identities=19% Similarity=0.223 Sum_probs=265.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC-Cc------------------ccccCChhhHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG-IK------------------LGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~-i~------------------~~sk~~~~~w~~~ls 63 (1398)
|++|+|||+||+++..++++|+||..|+.||.+|+...+..+.. .+ +.+|. ...|.+.|+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~ls 161 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKI-IGADSDFFA 161 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccc-cchhHHHHH
Confidence 78999999999999999999999999999999998766555542 22 22222 125789999
Q ss_pred HHHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-
Q 000604 64 TIAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~-~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~- 141 (1398)
+|+++|+..++.....+ ..+|+ ++|+|++++||++.||++++|++|+++++|.+||+.++||||++++|+|++.+.+
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 99999999995311122 24788 7899999999999999999999999999999999999999999999999998875
Q ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
++..+++.+.+ +|++++++++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||++
T Consensus 241 ~~~~~~~~~~~le~~~~-~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~i 319 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQ-RESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATL 319 (527)
T ss_pred ceeEEeCCHHHHHHHHH-HHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEE
Confidence 45788999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCC------CCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHH
Q 000604 216 TPSIDNIS------TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 289 (1398)
Q Consensus 216 i~sid~l~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~d 289 (1398)
+++++.++ +..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|+|+||+++|
T Consensus 320 i~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~D 386 (527)
T cd03335 320 VSTLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDFMLDEMERSLHD 386 (527)
T ss_pred ecChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHH
Confidence 99997653 44899999999999986 589999999999999999999999999999999999
Q ss_pred HHHHHHHhhccCeeeeCCCcccccc
Q 000604 290 AVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 290 al~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
|++++++++.++++|+||||+|+++
T Consensus 387 al~~~~~~~~~~~vvpGGGa~e~~l 411 (527)
T cd03335 387 ALCVVKRTLESNSVVPGGGAVETAL 411 (527)
T ss_pred HHHHHHHHhhCCCEeeCCCHHHHHH
Confidence 9999999999999999999999854
No 18
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.9e-43 Score=432.29 Aligned_cols=290 Identities=21% Similarity=0.333 Sum_probs=264.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcc----------------------cccCChhhHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL----------------------GKEDSEEDWLG 60 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~----------------------~sk~~~~~w~~ 60 (1398)
|++|+||||||+++..++++|+||..|+.||.+|+...+..+..+++ .+|. ...+.+
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~-~~~~~~ 169 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKL-IASEKE 169 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCc-chhHHH
Confidence 68899999999999999999999999999999998765555444332 2222 135789
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCC---CCcceecCCcEEEEeecccc
Q 000604 61 IITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEY 137 (1398)
Q Consensus 61 ~ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k---~Mp~~i~nprIlll~~~Le~ 137 (1398)
.|++|+++|+..+.+ ..|. ++|+|++++||++.||++++|++|++++++. .||++++||||++++++||+
T Consensus 170 ~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~ 242 (522)
T cd03340 170 FFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELEL 242 (522)
T ss_pred HHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCC
Confidence 999999999999965 2455 7999999999999999999999999999965 46999999999999999999
Q ss_pred cccc-------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHH
Q 000604 138 QRVP-------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARC 210 (1398)
Q Consensus 138 ~r~~-------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~ 210 (1398)
.+.+ +.+..++.+++ +|++++.+++++|++.|++||+|+++|++.|++||.++||+++++|++.+|+|||++
T Consensus 243 ~~~~~~~~i~i~~~~~~~~~~~-~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~ 321 (522)
T cd03340 243 KAEKDNAEVRVEDPEEYQAIVD-AEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQA 321 (522)
T ss_pred CccccceEEEECCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHH
Confidence 9863 45777888999 999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 211 TGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 211 TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
|||+++++++++++..||+|+.|+++++++ ++|++|+||+.+++|||+|||++..+++|+||+++||
T Consensus 322 tGa~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Da 388 (522)
T cd03340 322 TGGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDA 388 (522)
T ss_pred HCCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHH
Confidence 999999999999999999999999998875 5899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCcccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
++++++++.++.+|+||||+|+.+
T Consensus 389 l~~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 389 IMIVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred HHHHHHHhcCCCEEECcCHHHHHH
Confidence 999999999999999999999854
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.1e-42 Score=430.30 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=269.0
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHH------------------hCCcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~ls~ 64 (1398)
|++|+||||||++|..++++|+||..|+.||++|+...+..+ +.+++.+|. ...|.+.|++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ls~ 162 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKV-VSQYSSLLAP 162 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhcccc-chhHHHHHHH
Confidence 789999999999999999999999999999999987654433 334444442 3579999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCC-CCCcceecCCcEEEEeecccccccc--
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKH-KRMTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~-k~Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.+ ++||++++||||++++|+|++.+.+
T Consensus 163 l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 163 LAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 9999999997632 2346887 899999999999999999999999999999 5999999999999999999998764
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHh
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCT 211 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~V-----s~~A~~~L~~~gI~vv~~Vk~~~LerIar~T 211 (1398)
..+.+++.+++ +|+++++.++++|++.|++||+|+++| +++|++||.++||.+++++++.+|+|||++|
T Consensus 241 ~~~~~~~~~~~~~~~~-~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~t 319 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLK-EERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTI 319 (517)
T ss_pred ceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHH
Confidence 45788999999 999999999999999999999999998 9999999999999999999999999999999
Q ss_pred CCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-ceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 212 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR-LGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 212 GA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~-~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
||+++++++++++..||+|+.|+++++++ ++|++|++|+.. ..|||+|||+|+.+++|+||+++||
T Consensus 320 Ga~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DA 386 (517)
T TIGR02342 320 GCKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDA 386 (517)
T ss_pred CCEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999888875 489999999884 8999999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCcccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
++++++++.++.+||||||+|++.
T Consensus 387 l~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 387 LCVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred HHHHHHHhhCCCEEECcCHHHHHH
Confidence 999999999999999999999854
No 20
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-42 Score=428.86 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=264.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc---------------------ccccCChhhHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK---------------------LGKEDSEEDWLGI 61 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~---------------------~~sk~~~~~w~~~ 61 (1398)
|++|+|||+||++|..++++|+||..|+.||.+|+...+..+...+ +++|. ...|.+.
T Consensus 90 TtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~-~~~~~~~ 168 (517)
T cd03336 90 TSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI-LTQDKEH 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc-cchhHHH
Confidence 7899999999999999999999999999999999876554443333 33332 1358899
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc
Q 000604 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1398)
Q Consensus 62 ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~ 141 (1398)
|++|+++|+..+.. .+|+ ++|+|++++||+++||++++|+|+++++.+ .||++++||||+++++||||++.+
T Consensus 169 l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~ 240 (517)
T cd03336 169 FAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIK 240 (517)
T ss_pred HHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCccccc
Confidence 99999999999853 3566 789999999999999999999999999876 589999999999999999999886
Q ss_pred c--------ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCC
Q 000604 142 N--------QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 213 (1398)
Q Consensus 142 ~--------~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA 213 (1398)
. ++.+++.+.+ +|++++++++.+|++.|+++|+++++|++.|++||.++||+++++++..+|+|||++|||
T Consensus 241 ~~~~~~~~~~~~~~~~l~~-~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa 319 (517)
T cd03336 241 IFGAKVRVDSTAKVAEIEE-AEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGG 319 (517)
T ss_pred ccCceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 3 6888988888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHH
Q 000604 214 LITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFA 293 (1398)
Q Consensus 214 ~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v 293 (1398)
+++++++.+++..||+|+.|++..+++ ++|++|+||+.+.+|||+|||+|+.+|+|+||+++||+++
T Consensus 320 ~ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~ 386 (517)
T cd03336 320 EIASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCV 386 (517)
T ss_pred EEecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875 5899999999999999999999999999999999999999
Q ss_pred HHHhhccCeeeeCCCcccccc
Q 000604 294 AYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 294 ~~~~~le~~~l~ggGa~e~~~ 314 (1398)
+++++.++++|+||||+|+++
T Consensus 387 ~~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 387 LAQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred HHHHHhCCCEEeCCCHHHHHH
Confidence 999999999999999999854
No 21
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.3e-42 Score=427.36 Aligned_cols=293 Identities=21% Similarity=0.277 Sum_probs=267.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc-------------------ccccCChhhHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK-------------------LGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~-------------------~~sk~~~~~w~~~ls 63 (1398)
|++|+||||||++|..++++|+||..|+.||++|+...+..+.+++ +.+|. ...+.+.|+
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~ls 169 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKL-PIDLADQLT 169 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 6899999999999999999999999999999999876555554443 22222 136789999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc--
Q 000604 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
+|+++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|++.+.++.||+++.||||++++++|++.+++
T Consensus 170 ~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~ 245 (531)
T TIGR02347 170 EIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVN 245 (531)
T ss_pred HHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccC
Confidence 9999999999763 235777 7899999999999999999999999999999999999999999999999999865
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcC-------CC---EEEecCCCcHHHHHHHHHcCcEEEEccChHHHHH
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALR-------PN---VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLER 206 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~g-------pn---VVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~Ler 206 (1398)
....++..++. .|++++++++++|+.++ |+ ||+|+++|++.|++||.++||++++++++.+|+|
T Consensus 246 ~~~~~~~~~~~~~~~~-~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~ 324 (531)
T TIGR02347 246 SGFFYSNAEQREKLVE-AERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMER 324 (531)
T ss_pred ceEEEcCHHHHHHHHH-HHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHH
Confidence 45788888999 99999999999999977 36 9999999999999999999999999999999999
Q ss_pred HHHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHH
Q 000604 207 IARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHV 286 (1398)
Q Consensus 207 Iar~TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~ 286 (1398)
||++|||++++++++++++.||+|+.|+++.+++ ++|++|+||..+..|||+|||+|+.+|+|+||+
T Consensus 325 ia~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~ 391 (531)
T TIGR02347 325 LTLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDA 391 (531)
T ss_pred HHHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHH
Confidence 9999999999999999999999999999999986 489999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 287 VQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 287 l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
++||++++++++.++++||||||+|+++
T Consensus 392 l~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 392 VRDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred HHHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 9999999999999999999999999854
No 22
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=3.3e-42 Score=426.84 Aligned_cols=295 Identities=17% Similarity=0.234 Sum_probs=268.4
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcc------------------cccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL------------------GKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~------------------~sk~~~~~w~~~ls~ 64 (1398)
|++++|||+|++++..+++.|+||..|+.||++|+...+..+...+. .+|. ...|.+.|++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~-~~~~~~~ls~ 161 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKV-VSQYSSLLAP 161 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHHH
Confidence 78999999999999999999999999999999998776555544433 2222 1358899999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCC-CcceecCCcEEEEeecccccccc--
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-MTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~-Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
|+++|+..+.++. .++.+|+ ++|+|.+++||+++||++++|++|+++++|+. ||+.++||||++++||||+.+.+
T Consensus 162 li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~ 239 (515)
T cd03338 162 IAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMD 239 (515)
T ss_pred HHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccC
Confidence 9999999998642 2247898 78999999999999999999999999999986 59999999999999999998775
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHh
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCT 211 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~V-----s~~A~~~L~~~gI~vv~~Vk~~~LerIar~T 211 (1398)
+.+.+++.+++ +|+++++.++++|++.|++||+|+++| +++|++||.++||.+++++++.+|+|||++|
T Consensus 240 ~~~~i~~~~~~~~~~~-~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~t 318 (515)
T cd03338 240 NNIVVNDYAQMDRILR-EERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTI 318 (515)
T ss_pred ceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHH
Confidence 45678999999 999999999999999999999999997 9999999999999999999999999999999
Q ss_pred CCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 212 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 212 GA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
||++++++++++++.||+|+.|+++++++ ++|++|+||+. +.+|||+|||+|+.+++|+||+++||
T Consensus 319 Ga~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Da 385 (515)
T cd03338 319 GCKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDA 385 (515)
T ss_pred CCEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999975 48999999997 68999999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCcccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
++++++++.++++|+||||+|+.+
T Consensus 386 l~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 386 LCVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred HHHHHHHhhCCCEEECCCHHHHHH
Confidence 999999999999999999999854
No 23
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.4e-41 Score=422.23 Aligned_cols=296 Identities=18% Similarity=0.207 Sum_probs=264.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC---C----------------cccccCChhhHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG---I----------------KLGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~---i----------------~~~sk~~~~~w~~~ls 63 (1398)
|++|+|||+|+++|..+++.|+||..|+.||..|+...+..+.. + ++++|. ...|.+.|+
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ls 165 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKI-IGLDSDFFS 165 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 78999999999999999999999999999999998765544432 2 222222 134789999
Q ss_pred HHHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-
Q 000604 64 TIAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~-~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~- 141 (1398)
+|+++|+..++.+...+ ..+|+ ++|+|+|++||++.||++++|++|++.+.|.+||+.++||||+|++++|++.+.+
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~ 244 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMAL 244 (536)
T ss_pred HHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccC
Confidence 99999999996321122 24788 8999999999999999999999999999999999999999999999999999765
Q ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
++...++.+.+ +|++++.+++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||++
T Consensus 245 ~~~~~~~~~~~le~~~~-~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~i 323 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQ-READITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTL 323 (536)
T ss_pred ceeEEeCCHHHHHHHHH-HHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEE
Confidence 45688999999 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccC------CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHH
Q 000604 216 TPSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 289 (1398)
Q Consensus 216 i~sid~l------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~d 289 (1398)
+++++.+ ++..||+|+.|++++++. ++|++|+||..+.+|||+|||+|+.+++|+||+++|
T Consensus 324 i~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~D 390 (536)
T TIGR02340 324 VSTLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDFMLDEMERSLHD 390 (536)
T ss_pred ecchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHH
Confidence 9999655 345699999999999986 489999999988999999999999999999999999
Q ss_pred HHHHHHHhhccCeeeeCCCcccccc
Q 000604 290 AVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 290 al~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
|++++++++.++++||||||+|+..
T Consensus 391 Al~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 391 ALCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred HHHHHHHHhcCCCEEECCCHHHHHH
Confidence 9999999999999999999999854
No 24
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.9e-41 Score=419.94 Aligned_cols=291 Identities=19% Similarity=0.303 Sum_probs=265.3
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcc---------------------cccCChhhHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL---------------------GKEDSEEDWLGI 61 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~---------------------~sk~~~~~w~~~ 61 (1398)
|++|+||||||+++..++++|+||..|+.||.+|+...+..+..++. .+|. ...+.+.
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ 170 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKL-IAHEKEF 170 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccc-ccchHHH
Confidence 78999999999999999999999999999999998765554444332 2222 1347799
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCC---CCcceecCCcEEEEeeccccc
Q 000604 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEYQ 138 (1398)
Q Consensus 62 ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k---~Mp~~i~nprIlll~~~Le~~ 138 (1398)
|++|+++|+..+.++ .+|+ ++|+|+|++||++.||++++|++|++++++. .||++++||||+|++++||+.
T Consensus 171 l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 244 (522)
T TIGR02345 171 FSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELK 244 (522)
T ss_pred HHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccC
Confidence 999999999998752 4777 7999999999999999999999999998865 469999999999999999998
Q ss_pred ccc-------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHh
Q 000604 139 RVP-------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCT 211 (1398)
Q Consensus 139 r~~-------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~T 211 (1398)
+.+ +.+..++.+++ .|++++++++++|++.|++||+|+++|++.+++||.++||+++++|+..+|+|||++|
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~-~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~t 323 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVD-AEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKAC 323 (522)
T ss_pred ccccceEEEECCHHHHHHHHH-HHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHh
Confidence 775 45788889999 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHH
Q 000604 212 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 291 (1398)
Q Consensus 212 GA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal 291 (1398)
||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+++|+||+++||+
T Consensus 324 ga~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl 390 (522)
T TIGR02345 324 GGSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAI 390 (522)
T ss_pred CCeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998875 58999999999999999999999999999999999999
Q ss_pred HHHHHhhccCeeeeCCCcccccc
Q 000604 292 FAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 292 ~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
+++++++.++.+|+||||+|+..
T Consensus 391 ~~~~~~~~~~~vvpGGG~~e~~l 413 (522)
T TIGR02345 391 MIVRRALKARKIVAGGGAIEMEL 413 (522)
T ss_pred HHHHHHhcCCCEEeCCCHHHHHH
Confidence 99999999999999999999854
No 25
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=9.7e-42 Score=418.49 Aligned_cols=263 Identities=25% Similarity=0.401 Sum_probs=239.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhC------------------CcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~------------------i~~~sk~~~~~w~~~ls~ 64 (1398)
|++|+||||||++|..++++|+||..|+.||.+|+...+..+.+ +++.+|. .+.|.+.|++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~-~~~~~~~ls~ 169 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKF-VSRWSDLMCN 169 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCc-chhHHHHHHH
Confidence 78999999999999999999999999999999998765444433 3444443 2579999999
Q ss_pred HHHHHHhhcCCCCCCC-CCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccC
Q 000604 65 IAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~-~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~ 143 (1398)
|+++|+..+.++.... ..+|+++||+|+|++||++.||++++|++|+++++|++||++++||||+|++|||||
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~------ 243 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY------ 243 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce------
Confidence 9999999998764222 258887889999999999999999999999999999999999999999999999988
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCC
Q 000604 144 LASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIS 223 (1398)
Q Consensus 144 ~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l~ 223 (1398)
||+|+++|++.|++||.++||++++++++++|+|||++|||++++++++++
T Consensus 244 -----------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~ 294 (480)
T cd03337 244 -----------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELT 294 (480)
T ss_pred -----------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCC
Confidence 999999999999999999999999999999999999999999999999999
Q ss_pred CCCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCe
Q 000604 224 TTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETS 302 (1398)
Q Consensus 224 ~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~ 302 (1398)
++.||+ |+.|+++++++ ++|++|+||+.+.+|||+|||+++.+|+|+||+++||++++++++.++.
T Consensus 295 ~~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~ 361 (480)
T cd03337 295 ESDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPK 361 (480)
T ss_pred HHHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 999999 67777787765 5899999999999999999999999999999999999999999999999
Q ss_pred eeeCCCcccccc
Q 000604 303 FLADEGATLPKM 314 (1398)
Q Consensus 303 ~l~ggGa~e~~~ 314 (1398)
+|+||||+|+++
T Consensus 362 ~vpGGGa~E~~l 373 (480)
T cd03337 362 LVPGGGATEMAV 373 (480)
T ss_pred EEeCCCHHHHHH
Confidence 999999999854
No 26
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.1e-40 Score=409.74 Aligned_cols=289 Identities=19% Similarity=0.241 Sum_probs=262.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcc---------------------cccCChhhHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL---------------------GKEDSEEDWLGI 61 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~---------------------~sk~~~~~w~~~ 61 (1398)
|++|+||||||++|..++++|+||..|++||++|+...+..+.+.++ ++|. ...|.+.
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski-~~~~~~~ 169 (519)
T TIGR02341 91 TSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKI-LSQHKDH 169 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhh-hhhHHHH
Confidence 78999999999999999999999999999999998776554443333 2232 2568899
Q ss_pred HHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc
Q 000604 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1398)
Q Consensus 62 ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~ 141 (1398)
|++++++|+..+.. ..|+ +.|+|.|++||+++||++++|+|+++.+.| .||+.++||||++++++||+.+.+
T Consensus 170 ~s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~ 241 (519)
T TIGR02341 170 FAQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVK 241 (519)
T ss_pred HHHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccc
Confidence 99999999999853 1255 569999999999999999999999999887 689999999999999999998866
Q ss_pred c--------ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCC
Q 000604 142 N--------QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGA 213 (1398)
Q Consensus 142 ~--------~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA 213 (1398)
. +...+..+.+ .|+++++++++.|++.|+++|+++++|++.|++||.++||.++++++..+|+|||++|||
T Consensus 242 ~~~~~~~~~~~~~~~~l~~-~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa 320 (519)
T TIGR02341 242 VFGSRVRVDSTAKVAELEA-AEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGG 320 (519)
T ss_pred cCCceEEeCCHHHHHHHHH-HHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCC
Confidence 3 3667888888 999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHH
Q 000604 214 LITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFA 293 (1398)
Q Consensus 214 ~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v 293 (1398)
.++++++.+++..||+|+.|+++.+++ ++|++|+||+.+..|||+|||+|+.+|+|+||+++||+++
T Consensus 321 ~ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~ 387 (519)
T TIGR02341 321 EIVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCV 387 (519)
T ss_pred EEecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999988875 5899999999999999999999999999999999999999
Q ss_pred HHHhhccCeeeeCCCcccccc
Q 000604 294 AYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 294 ~~~~~le~~~l~ggGa~e~~~ 314 (1398)
+++++.++.+|+||||+|+++
T Consensus 388 ~~~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 388 LSQTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred HHHHHhCCCEEeCCCHHHHHH
Confidence 999999999999999999854
No 27
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-40 Score=364.03 Aligned_cols=298 Identities=18% Similarity=0.244 Sum_probs=269.8
Q ss_pred CCcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH------------------HHHHHhCCcccccCChhhHHHHHH
Q 000604 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS------------------ELLRAEGIKLGKEDSEEDWLGIIT 63 (1398)
Q Consensus 2 ~~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~------------------qLl~~~~i~~~sk~~~~~w~~~ls 63 (1398)
-||||++||.||..+..|+++|+||+.|+..|..|... +|.+.+.+++++|+ .+.+...|+
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKv-vSq~s~lla 178 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKV-VSQYSSLLA 178 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHH-HHhhccccc
Confidence 38999999999999999999999999999999998754 46666777887776 356778899
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc--
Q 000604 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
+++|+|+..+... .+..++|+ +.|||.|..||.++|+++++|+||++......-|++++++||.|++|-|..+|+.
T Consensus 179 pmAVdAV~kv~dp-~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 179 PMAVDAVLKVIDP-ENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred hHHHHHHHhccCc-ccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcc
Confidence 9999999987642 23446888 7899999999999999999999999999887789999999999999999999884
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHh
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCT 211 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~V-----s~~A~~~L~~~gI~vv~~Vk~~~LerIar~T 211 (1398)
+.+..++.+++ .|+.|+.+++++|.+.|+||+|+||+| +++|++||.+.+|+|+..+.++|+|.|++.+
T Consensus 257 n~iiv~DyaqMdrilk-eER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l 335 (534)
T KOG0358|consen 257 NQIIVNDYAQMDRILK-EERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTL 335 (534)
T ss_pred cceEecCHHHHHHHHH-HHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhc
Confidence 56999999999 999999999999999999999999986 8999999999999999999999999999999
Q ss_pred CCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 212 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 212 GA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
|+.++.++|.++++.||+++.+++.....+ .+++.+.|+.+ ..+|||++||++.-+|+|.+|++|||
T Consensus 336 ~c~Pia~id~f~~d~Lg~adlveE~~~~G~------------gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDA 403 (534)
T KOG0358|consen 336 GCKPIADIDHFTADKLGSADLVEETDSSGE------------GKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDA 403 (534)
T ss_pred CCeecchhhhcChhhcCcchhhhhcccCCC------------ccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhh
Confidence 999999999999999999999887643321 37999999987 68999999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCccccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPKMR 315 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~~~ 315 (1398)
+||+|.+.+.+.+++|||+.|++..
T Consensus 404 LCVirCLvk~r~li~GGGapEieia 428 (534)
T KOG0358|consen 404 LCVIRCLVKKRALIAGGGAPEIEIA 428 (534)
T ss_pred hHHHHhhhhccceecCCCCcchHHH
Confidence 9999999999999999999998643
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=5.1e-39 Score=398.40 Aligned_cols=291 Identities=15% Similarity=0.211 Sum_probs=261.5
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcc--------------------cccCChhhHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL--------------------GKEDSEEDWLGII 62 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~--------------------~sk~~~~~w~~~l 62 (1398)
|++|+|||+|++++..++++|+||..|++||++|+...+..+...++ ++|.. .. .+.|
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~-~~-~~~l 170 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQY-GN-EDFL 170 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccC-ch-HHHH
Confidence 78999999999999999999999999999999998776655544432 12211 12 7889
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-
Q 000604 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 63 s~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~- 141 (1398)
++|+++|+..+.++. .+.+|+ +.|+|+|++||+++||++++|++|++... .||+.++||||+++++|+++.+.+
T Consensus 171 s~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~ 245 (531)
T TIGR02346 171 AQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTET 245 (531)
T ss_pred HHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccC
Confidence 999999999998642 235788 78999999999999999999999999954 589999999999999999999876
Q ss_pred ------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
++...+..+.. .|+++++.++++|++.|++||+++++|++.|++||.++||.++++++..+|+|||++|||++
T Consensus 246 ~~~~~~~~~~~l~~~~~-~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~i 324 (531)
T TIGR02346 246 KGTVLIHNAEELLNYSK-GEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATP 324 (531)
T ss_pred ceEEEECCHHHHHHHHH-HHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEE
Confidence 34667878888 99999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCC-CCceeEEEeccCCHHHHHHHHHHHHHHHHHH
Q 000604 216 TPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP-RRLGCMVLLRGKCREELKKVKHVVQYAVFAA 294 (1398)
Q Consensus 216 i~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~-~~~g~TIlLRG~s~~~L~evkr~l~dal~v~ 294 (1398)
+++++++++..||+|+.|+++++++ +.|.+|++|. .+..|||+|||+|+.+++|+||+++||++++
T Consensus 325 i~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~ 391 (531)
T TIGR02346 325 LARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVI 391 (531)
T ss_pred ecccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999865 4799999998 4789999999999999999999999999999
Q ss_pred HHhhccCeeeeCCCcccccc
Q 000604 295 YHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 295 ~~~~le~~~l~ggGa~e~~~ 314 (1398)
++++.++++|+||||+|+.+
T Consensus 392 k~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 392 KALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred HHHhcCCCEEECcCHHHHHH
Confidence 99999999999999999854
No 29
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=7.1e-39 Score=393.33 Aligned_cols=271 Identities=20% Similarity=0.273 Sum_probs=243.5
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc-------------------ccccCChhhHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK-------------------LGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~-------------------~~sk~~~~~w~~~ls 63 (1398)
|++++||++|+++|..+++.|+||..|+.||++|+...+..+.+.+ +.+|. ...|.+.|+
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~-~~~~~~~l~ 165 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKL-HADLADQLT 165 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCccc-chhHHHHHH
Confidence 7899999999999999999999999999999999876555443333 33332 246889999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccC
Q 000604 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~ 143 (1398)
+|+++|+..+.++ ++.+|+ +.|+|+|++||++.||++++|++|++.+.++.||++++||||+++++||++.+.+..
T Consensus 166 ~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~ 241 (484)
T cd03342 166 EIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 241 (484)
T ss_pred HHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccC
Confidence 9999999999863 347888 889999999999999999999999999999999999999999999999999877633
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCC
Q 000604 144 LASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIS 223 (1398)
Q Consensus 144 ~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l~ 223 (1398)
. .+ . .+||+++++|++.|+++|.++||++++++++++|+|||++|||++++++++++
T Consensus 242 ~-~~----~------------------~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~ 298 (484)
T cd03342 242 S-GF----F------------------YSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLS 298 (484)
T ss_pred c-EE----E------------------EEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCC
Confidence 1 11 0 13999999999999999999999999999999999999999999999999999
Q ss_pred CCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCee
Q 000604 224 TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSF 303 (1398)
Q Consensus 224 ~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~ 303 (1398)
++.||+|+.|+++.+++ ++|++|+||+.+..|||+|||+|+.+|+|+||+++||++++++++.++++
T Consensus 299 ~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~ 365 (484)
T cd03342 299 PECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCV 365 (484)
T ss_pred hhhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcE
Confidence 99999999999999876 47999999999999999999999999999999999999999999999999
Q ss_pred eeCCCcccccc
Q 000604 304 LADEGATLPKM 314 (1398)
Q Consensus 304 l~ggGa~e~~~ 314 (1398)
||||||+|+++
T Consensus 366 vpGGGa~e~~l 376 (484)
T cd03342 366 VPGAGAFEVAL 376 (484)
T ss_pred EeCCCHHHHHH
Confidence 99999999854
No 30
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-38 Score=351.40 Aligned_cols=289 Identities=19% Similarity=0.261 Sum_probs=262.1
Q ss_pred CCcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH---------------------HHHHHhCCcccccCChhhHHH
Q 000604 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS---------------------ELLRAEGIKLGKEDSEEDWLG 60 (1398)
Q Consensus 2 ~~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~---------------------qLl~~~~i~~~sk~~~~~w~~ 60 (1398)
-|||+|||+|||++|+.|+.+++||..|+.||++|... .|++++.+.+++|+- ...++
T Consensus 94 TTSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiL-sq~ke 172 (527)
T KOG0363|consen 94 TTSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKIL-SQDKE 172 (527)
T ss_pred ceehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHH-HhhHH
Confidence 38999999999999999999999999999999998654 355666666666652 46689
Q ss_pred HHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeeccccccc
Q 000604 61 IITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV 140 (1398)
Q Consensus 61 ~ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~ 140 (1398)
+|+.|+++|+..++- .-|+ +.|+|+|+.||++.||.+-+|++++|.+-- ..|++++|||||+-+.+++..|.
T Consensus 173 hFaelavdAV~rLkG------s~nL-~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKv 244 (527)
T KOG0363|consen 173 HFAELAVDAVLRLKG------STNL-EAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKV 244 (527)
T ss_pred HHHHHHHHHHHHhcC------CCCc-cceeeehhcCCccccccccccceeccccCC-CCcccccccceEEecCCCcccce
Confidence 999999999998875 2344 679999999999999999999999998764 57999999999999999999987
Q ss_pred c--------cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhC
Q 000604 141 P--------NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTG 212 (1398)
Q Consensus 141 ~--------~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TG 212 (1398)
+ +....+..+-. .|++.++.+|+||...|+|+.+...-|.++-.++|..+||+.+....-.-+||++.+||
T Consensus 245 KvfGarvrVds~~klaelE~-AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtG 323 (527)
T KOG0363|consen 245 KVFGARVRVDSTAKLAELEK-AEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTG 323 (527)
T ss_pred eeecceEeecchhHHHHHHH-HHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhccc
Confidence 5 33455555556 89999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHH
Q 000604 213 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVF 292 (1398)
Q Consensus 213 A~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~ 292 (1398)
+.|++++|.....++|+|+.++..-+|+ ++++.|+||.-...|||+|||++.++|||.+|++|||+|
T Consensus 324 GeI~STFd~p~~~klG~C~~IeeimiGe-------------d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALc 390 (527)
T KOG0363|consen 324 GEIVSTFDNPELVKLGECDLIEEIMIGE-------------DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALC 390 (527)
T ss_pred ceeeeccCCcchhccccchhhHHHhcCc-------------cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999998887 489999999988899999999999999999999999999
Q ss_pred HHHHhhccCeeeeCCCccccc
Q 000604 293 AAYHLSLETSFLADEGATLPK 313 (1398)
Q Consensus 293 v~~~~~le~~~l~ggGa~e~~ 313 (1398)
|+.....|++++.||||.|+-
T Consensus 391 VLaqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 391 VLAQTVKESRVVLGGGCSEML 411 (527)
T ss_pred HHHHHhccceeeecCCcHHHH
Confidence 999999999999999999974
No 31
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.9e-39 Score=364.14 Aligned_cols=295 Identities=19% Similarity=0.199 Sum_probs=270.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHH-------------------HHHHHhCCcccccCChhhHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS-------------------ELLRAEGIKLGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~-------------------qLl~~~~i~~~sk~~~~~w~~~ls 63 (1398)
||||++|+||+++|.+|+..++||..++.||+.|+.+ .|...+.+++++|.- ..-.++|+
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i-~~ds~~f~ 172 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKII-GMDSDFFT 172 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceec-ccchHHHH
Confidence 7999999999999999999999999999999999876 356667778888762 35569999
Q ss_pred HHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc--
Q 000604 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1398)
Q Consensus 64 ~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~-- 141 (1398)
.++++|++.++--..+|...-+-+.|.|.|.+|++.-||.++.|+.++..++...||++|.|+||++|+|.|.-.+..
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 999999998875433566666669999999999999999999999999999999999999999999999999887764
Q ss_pred -----cChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 142 -----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 142 -----~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
.....++.+.+ .|.+..+..+++|++.|+||||++|+|++.+++||.++|+++|+|+++.||++||++|||+++
T Consensus 253 v~vvv~dp~kle~ir~-~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~ 331 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQ-REQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLL 331 (545)
T ss_pred ceEEEcChHHHHHHHH-HHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeee
Confidence 55788888888 999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC------CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 217 PSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 217 ~sid~l------~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
+|+.++ .+..+|+|+.|.+.+|++ +.++.+.|.+.. .|+|+|||+|...+||+||.+||+
T Consensus 332 sSla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiILrgaNd~~~DEmers~hda 397 (545)
T KOG0360|consen 332 SSLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASIILRGANDFMLDEMERSLHDA 397 (545)
T ss_pred ehhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEEEecCCcccHhhhccchhhH
Confidence 999854 567899999999999997 579999998877 999999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPK 313 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~ 313 (1398)
+++++..++++.+|+||||+|..
T Consensus 398 L~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 398 LCVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred HHHHHHHhccCccccCccHHHHH
Confidence 99999999999999999999974
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.4e-37 Score=381.40 Aligned_cols=259 Identities=22% Similarity=0.295 Sum_probs=238.5
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHH------------------hCCcccccCChhhHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~ls~ 64 (1398)
|++++|||||++++..++++|+||..|++||++|+...+..+ +.+++.+|. ...|.+.|++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKL-VSGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhcccccc-cccchHHHHH
Confidence 688999999999999999999999999999999887654443 344444444 2569999999
Q ss_pred HHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccCh
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL 144 (1398)
Q Consensus 65 l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~~ 144 (1398)
++++|+..+.++.. .+|. ++|+|++++||++.||++++|++|++++.|+.|++.++||||++++|+|++
T Consensus 162 l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------- 230 (464)
T ss_pred HHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------
Confidence 99999999987532 4555 899999999999999999999999999999999999999999999999998
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCC
Q 000604 145 ASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIST 224 (1398)
Q Consensus 145 ~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l~~ 224 (1398)
||+++++|++.|+++|.++||++++++++.+|+|||++|||+++++++++++
T Consensus 231 ----------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~ 282 (464)
T cd00309 231 ----------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTP 282 (464)
T ss_pred ----------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCc
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeee
Q 000604 225 TRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFL 304 (1398)
Q Consensus 225 ~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l 304 (1398)
..+|+|+.|+++++++ ++|++|+||..+.+|||+|||+|..+|+|+||+++||+++++++++++.+|
T Consensus 283 ~~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~v 349 (464)
T cd00309 283 EDLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIV 349 (464)
T ss_pred ccCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCcc
Confidence 9999999999999986 589999999989999999999999999999999999999999999999999
Q ss_pred eCCCcccccc
Q 000604 305 ADEGATLPKM 314 (1398)
Q Consensus 305 ~ggGa~e~~~ 314 (1398)
+||||+|+..
T Consensus 350 pGGGa~E~~l 359 (464)
T cd00309 350 PGGGAAEIEL 359 (464)
T ss_pred cCCcHHHHHH
Confidence 9999999854
No 33
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=3.1e-37 Score=380.79 Aligned_cols=289 Identities=26% Similarity=0.372 Sum_probs=263.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHH-----------------HhCCcccccCChhhHHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLR-----------------AEGIKLGKEDSEEDWLGIITTI 65 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~-----------------~~~i~~~sk~~~~~w~~~ls~l 65 (1398)
|++++||++|++++..++++|+||..|+.|+..++...+.. .+.+.+.++. ...|.+.|+++
T Consensus 64 ts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~-~~~~~~~l~~l 142 (485)
T PF00118_consen 64 TSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKI-SSSWSDHLSKL 142 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSC-GGGCHHHHHHH
T ss_pred ceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccc-cccchhhhhhh
Confidence 57899999999999999999999999999999998654433 3344444442 36899999999
Q ss_pred HHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeeccccccc-----
Q 000604 66 AWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----- 140 (1398)
Q Consensus 66 ~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~----- 140 (1398)
+++|+..+..+ +|+ +.++|+++.||+++||++++|++|++.+++..||++++||||++++++|++.+.
T Consensus 143 i~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~ 215 (485)
T PF00118_consen 143 IVDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEI 215 (485)
T ss_dssp HHHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEE
T ss_pred HHHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeeccccccccccccc
Confidence 99999555432 666 569999999999999999999999999999999999999999999999999987
Q ss_pred -ccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcccc
Q 000604 141 -PNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSI 219 (1398)
Q Consensus 141 -~~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~si 219 (1398)
-+....++.+.+ +|+++++.++++|.+.|++||+++++|++.|+++|.++||.++.+|+..+|+|||++|||.+++++
T Consensus 216 ~~~~~~~~~~~~~-~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~ 294 (485)
T PF00118_consen 216 RITSPEQLDELSK-QEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSL 294 (485)
T ss_dssp EESSTHHHHHHHH-HHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSC
T ss_pred chhhHHHHHHHHh-hhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEeccc
Confidence 355888999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEE--cCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHh
Q 000604 220 DNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE--GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 220 d~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~--gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++..+|+|+.+++..+++ ++|++|+ +|.....|||+|||++..+++++||+++||+++++++
T Consensus 295 ~~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~ 361 (485)
T PF00118_consen 295 DDLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSA 361 (485)
T ss_dssp GGSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHh
Confidence 999988899999999998886 5899999 6889999999999999999999999999999999999
Q ss_pred hccCeeeeCCCccccc
Q 000604 298 SLETSFLADEGATLPK 313 (1398)
Q Consensus 298 ~le~~~l~ggGa~e~~ 313 (1398)
+.++.+|+|||++|..
T Consensus 362 ~~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 362 LKDGGVVPGGGATELH 377 (485)
T ss_dssp HHSSEEEETTTHHHHH
T ss_pred ccCCceeecCcchhhh
Confidence 9999999999999974
No 34
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.7e-37 Score=374.09 Aligned_cols=260 Identities=17% Similarity=0.240 Sum_probs=235.7
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCccc--------------------ccCChhhHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLG--------------------KEDSEEDWLGII 62 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~--------------------sk~~~~~w~~~l 62 (1398)
|++|+|||+|++++..+++.|+||..|++||.+|+...+..+...++. +|. ..|.+.|
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~--~~~~~~l 160 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQ--YGNEDFL 160 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccc--cchHHHH
Confidence 788999999999999999999999999999999987766555444322 121 1378899
Q ss_pred HHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeeccccccccc
Q 000604 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN 142 (1398)
Q Consensus 63 s~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~ 142 (1398)
++|+++|+..+.++ ..+.+|+ +.|+|+|++||++.||++++|++|+++.. .|+++++||||++++++|++
T Consensus 161 ~~l~~~a~~~~~~~--~~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~----- 230 (472)
T cd03341 161 SPLVAEACISVLPE--NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI----- 230 (472)
T ss_pred HHHHHHHHHHHhhc--cCCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-----
Confidence 99999999999874 2346888 78999999999999999999999988765 46699999999999999998
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccC
Q 000604 143 QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNI 222 (1398)
Q Consensus 143 ~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l 222 (1398)
|++||+++++|++.|++||.++||.+++++++.+|+|||++|||+++++++++
T Consensus 231 ---------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l 283 (472)
T cd03341 231 ---------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAP 283 (472)
T ss_pred ---------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccC
Confidence 89999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 000604 223 STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 301 (1398)
Q Consensus 223 ~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~ 301 (1398)
+++.||+|+.|+++++++ ++|++|+||.. +.+|||+|||+++.+++|+||+++||++++++++.++
T Consensus 284 ~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~ 350 (472)
T cd03341 284 TPEEIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDG 350 (472)
T ss_pred CHhHCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999999875 58999999987 8899999999999999999999999999999999999
Q ss_pred eeeeCCCcccccc
Q 000604 302 SFLADEGATLPKM 314 (1398)
Q Consensus 302 ~~l~ggGa~e~~~ 314 (1398)
++|+||||+|+..
T Consensus 351 ~vVpGGG~~e~~l 363 (472)
T cd03341 351 RFVPGAGATEIEL 363 (472)
T ss_pred CEEeCcCHHHHHH
Confidence 9999999999854
No 35
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5.4e-36 Score=366.06 Aligned_cols=290 Identities=19% Similarity=0.203 Sum_probs=263.8
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCc----------------ccccCChhhHHHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK----------------LGKEDSEEDWLGIITTIA 66 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~----------------~~sk~~~~~w~~~ls~l~ 66 (1398)
||++|||||||++|..++++|+||..|..||++|....+..+..++ +.++. ...+ +.|+.|+
T Consensus 86 TtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~-~~~~-~~i~~lv 163 (524)
T COG0459 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKS-ANSD-EEIGELV 163 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeee-ccCh-HHHHHHH
Confidence 7899999999999999999999999999999999877665544443 22222 1345 8999999
Q ss_pred HHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEee-ccCCCCCc-ceecCCcEEEEeecccccccc---
Q 000604 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTK-NIKHKRMT-SQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 67 v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K-~~a~k~Mp-~~i~nprIlll~~~Le~~r~~--- 141 (1398)
++|+..|..... |+ +.|++.|..||+..|+++++|++|+| .+.|..|| +.++||+|||++++|++.+.+
T Consensus 164 ~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~ 237 (524)
T COG0459 164 VEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPL 237 (524)
T ss_pred HHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcc
Confidence 999999987421 66 78999999999999999999999999 99999999 899999999999999999885
Q ss_pred ----cChhHHHHHHHHHHH-HHHHHHHHHHHhcCCC-EEEecCCCcHHHHHHHHHcCcEEEEccChHHH-HHHHHHhCCe
Q 000604 142 ----NQLASFNTLLQQQEN-DHLKMVISKIEALRPN-VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLL-ERIARCTGAL 214 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~-e~L~~~V~rI~~~gpn-VVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~L-erIar~TGA~ 214 (1398)
+....|..+.+ +|+ ++|..+|.+|+..|+| |++++++|++++++||.+.+|+++++|+.++| +||+++|||.
T Consensus 238 e~~i~~~~~l~~i~e-~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~ 316 (524)
T COG0459 238 EIVISSGKPLLIIAE-DEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAK 316 (524)
T ss_pred eeEecCccHHHHHHH-HHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCce
Confidence 34567888899 888 9999999999999999 99999999999999999999999999999999 8999999999
Q ss_pred EccccccCCCCCcce--eeeEEEEEeccccccccccCCCCCceEEEEEcCCC--CceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 215 ITPSIDNISTTRLGH--CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR--RLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 215 Ii~sid~l~~~~LG~--C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~--~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
+++.++++++..+|. |+.|+..+++++ .+.+|++|.. ...|||+|||+++.+++|+||.++||
T Consensus 317 ~v~~~~d~t~~~~G~~~~~~ve~~~~~~~-------------~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DA 383 (524)
T COG0459 317 IVSVLKDLTTIVLGEGAAGLVEETKTGDY-------------DMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDA 383 (524)
T ss_pred EEeecccCceeecCccccceEEEeeccch-------------hhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHH
Confidence 999999999999999 999999988873 6889999986 78899999999999999999999999
Q ss_pred HHHHHHhhccCeeeeCCCcccccc
Q 000604 291 VFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 291 l~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
|++++++++++.+|+|||+++.+.
T Consensus 384 L~~~~~ave~g~iV~GGGa~e~~~ 407 (524)
T COG0459 384 LNVVRAAVEEGKIVPGGGAAEIEA 407 (524)
T ss_pred HHHHHHHHhcCCeEeCCCHHHHHH
Confidence 999999999999999999999854
No 36
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=1.7e-35 Score=326.01 Aligned_cols=207 Identities=33% Similarity=0.469 Sum_probs=194.5
Q ss_pred HHHHHhCCcccccCChhhHHHHHHHHHHHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCC
Q 000604 40 ELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM 119 (1398)
Q Consensus 40 qLl~~~~i~~~sk~~~~~w~~~ls~l~v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~M 119 (1398)
.|+..+.+++.+|. ..|.+.|++++++|+..+.++.. ++..++|+|+|++||++.||++++|++|+|+++|+.|
T Consensus 3 ~l~~ia~ts~~sk~--~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 3 LLLQVATTSLNSKL--SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred HHHHHHHHHhccch--hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 46677778888887 79999999999999999987431 4445999999999999999999999999999999999
Q ss_pred cceecCCcEEEEeecccccccccChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEcc
Q 000604 120 TSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNV 199 (1398)
Q Consensus 120 p~~i~nprIlll~~~Le~~r~~~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~V 199 (1398)
|+.++||||+|++++||| ||+++++|++.|+++|.++||++++++
T Consensus 77 ~~~~~n~~Ill~~~~le~-----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~ 121 (209)
T cd03333 77 PKRLENAKILLLDCPLEY-----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRV 121 (209)
T ss_pred CeEcCCCcEEEEeCCeeE-----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeC
Confidence 999999999999999999 999999999999999999999999999
Q ss_pred ChHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHH
Q 000604 200 KRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREE 279 (1398)
Q Consensus 200 k~~~LerIar~TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~ 279 (1398)
++.+|+|||++|||++++++++++++.||+|+.|+++++++ +++++|+||..+.+|||+|||++..+
T Consensus 122 ~~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~ 188 (209)
T cd03333 122 KKEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVE 188 (209)
T ss_pred CHHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhH
Confidence 99999999999999999999999999999999999999986 69999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhcc
Q 000604 280 LKKVKHVVQYAVFAAYHLSLE 300 (1398)
Q Consensus 280 L~evkr~l~dal~v~~~~~le 300 (1398)
|+|+||+++||++++++++++
T Consensus 189 l~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 189 LDEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHHhhC
Confidence 999999999999999999864
No 37
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2e-36 Score=341.09 Aligned_cols=294 Identities=17% Similarity=0.250 Sum_probs=272.8
Q ss_pred CCcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHH---------------HHHHhCCcccccCChhhHHHHHHHHH
Q 000604 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSE---------------LLRAEGIKLGKEDSEEDWLGIITTIA 66 (1398)
Q Consensus 2 ~~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~q---------------Ll~~~~i~~~sk~~~~~w~~~ls~l~ 66 (1398)
.||+|+|.||++++|...+.+|+||..|..||..|.... |...+..++.+|.+ ..-.+.+++++
T Consensus 91 ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~-~~la~~lt~~v 169 (520)
T KOG0359|consen 91 TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVH-AELADVLTPIV 169 (520)
T ss_pred cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCccc-HHHHhHhHHHH
Confidence 478999999999999999999999999999999987654 45566677777775 57789999999
Q ss_pred HHHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccc-----
Q 000604 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP----- 141 (1398)
Q Consensus 67 v~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~----- 141 (1398)
++|++.+.. ..+.+|+ ..|+|.+..-++..||.+|+|+|++.+..|..||++++|+-||+.+.+|||+|++
T Consensus 170 v~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 170 VDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred Hhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccch
Confidence 999999983 3456898 8999999999999999999999999999999999999999999999999999997
Q ss_pred --cChhHHHHHHHHHHHHHHHHHHHHHHhcCCC----EEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000604 142 --NQLASFNTLLQQQENDHLKMVISKIEALRPN----VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 142 --~~~~sl~~ii~~qE~e~L~~~V~rI~~~gpn----VVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~I 215 (1398)
+...+-+.+.. .|++++.+.+.+|+.++-. ||+.||||++..++.|++.||++++|.|+..|||+..+||+..
T Consensus 246 fYsta~ere~L~~-~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a 324 (520)
T KOG0359|consen 246 FYSTAEEREVLVL-AERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEA 324 (520)
T ss_pred hccchhHHHHHHH-HHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhccce
Confidence 24566777888 9999999999999998754 7899999999999999999999999999999999999999999
Q ss_pred ccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000604 216 TPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 295 (1398)
Q Consensus 216 i~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~ 295 (1398)
++|+|+|+++.||+|+++++.++|+| +|+|+|+|+++..|||+++|+|.+.+..+|.+++|++.+++
T Consensus 325 ~nsvddLtp~~LG~aglVye~tlGEE-------------kfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~ 391 (520)
T KOG0359|consen 325 VNSVDDLTPDYLGYAGLVYEYTLGEE-------------KFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVK 391 (520)
T ss_pred ecccccCChhhccccceeEEeeccce-------------eeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHH
Confidence 99999999999999999999999985 89999999999999999999999999999999999999999
Q ss_pred HhhccCeeeeCCCcccccc
Q 000604 296 HLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 296 ~~~le~~~l~ggGa~e~~~ 314 (1398)
|.+.+..+++|+|+.+.+.
T Consensus 392 ntl~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 392 NTLEDKCGIPGAGAFEVAL 410 (520)
T ss_pred HHhhhcccccCchHHHHHH
Confidence 9999999999999998753
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.4e-32 Score=309.78 Aligned_cols=292 Identities=15% Similarity=0.175 Sum_probs=259.4
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccC---C------------hhhHHHHHHHHHH
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKED---S------------EEDWLGIITTIAW 67 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~---~------------~~~w~~~ls~l~v 67 (1398)
+.+|+||||||..|+.++..|.+|.+|++||.+|....+..+.++.+..-. + ...-.++++.+++
T Consensus 101 nfvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa 180 (537)
T KOG0362|consen 101 NFVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVA 180 (537)
T ss_pred eEeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHH
Confidence 368999999999999999999999999999999998877665554322111 1 1234699999999
Q ss_pred HHHhhcCCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeeccccccccc-----
Q 000604 68 QAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN----- 142 (1398)
Q Consensus 68 ~Av~~v~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~----- 142 (1398)
+|+..+.|. ..+++ ++|+|+||.||++.+|+++.|+||+..+.. -+++-+.+||++++||++...++.
T Consensus 181 ~ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~eG--~v~~ak~arvAvf~cP~d~~~TEtkgTvL 253 (537)
T KOG0362|consen 181 KACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPEG--EVKSAKDARVAVFACPFDIAQTETKGTVL 253 (537)
T ss_pred HHHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccCC--cccccccceeEEEecCCCcccccCcceee
Confidence 999999985 23888 899999999999999999999999988773 348889999999999999998874
Q ss_pred --ChhHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccc
Q 000604 143 --QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSID 220 (1398)
Q Consensus 143 --~~~sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid 220 (1398)
+...+..+.+ .|...++.+|+.|...|++||++.+.|++.+++||.+.+|+|++--++-||.|++|..||.+++.+-
T Consensus 254 i~~A~el~~FSK-gEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~ 332 (537)
T KOG0362|consen 254 LKNAKELLNFSK-GEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLF 332 (537)
T ss_pred ecCcHhhhhhcc-ccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhcc
Confidence 4666777788 9999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEE-cCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhc
Q 000604 221 NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE-GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSL 299 (1398)
Q Consensus 221 ~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~-gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~l 299 (1398)
.+.++.||+|++++.+++|+. +++.|+ +|...+..||+|||++...||++||++++++++.+.+..
T Consensus 333 ~P~~~~lG~~d~V~~~EiG~~-------------~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~ 399 (537)
T KOG0362|consen 333 PPAPEELGYCDSVSTQEIGDT-------------LVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCS 399 (537)
T ss_pred CCCCccccccceeeeeecCCc-------------eEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhcc
Confidence 999999999999999999873 566665 555678899999999999999999999999999999999
Q ss_pred cCeeeeCCCccccccc
Q 000604 300 ETSFLADEGATLPKMR 315 (1398)
Q Consensus 300 e~~~l~ggGa~e~~~~ 315 (1398)
++++++|.|++|+++.
T Consensus 400 d~rLlpGagatEieLa 415 (537)
T KOG0362|consen 400 DSRLLPGAGATEIELA 415 (537)
T ss_pred CCccccCCchhHHHHH
Confidence 9999999999998653
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.98 E-value=2.7e-31 Score=328.82 Aligned_cols=265 Identities=16% Similarity=0.203 Sum_probs=226.0
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++|+||||||++|..++++|+||..|+.||++|+...+..+..++...+.. ...+.+.|++|+++|+..+
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v 168 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKV 168 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999987776665554432210 1356789999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCc-ceeEEeEEEeeccCCCC-------CcceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~d-S~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ +. +.|+ .||+..| +++++|++|++.+.+.. |++.++||+|+++++.|.- .
T Consensus 169 ~~~----g~------i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~------~- 229 (542)
T PRK12849 169 GKD----GV------ITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKISS------L- 229 (542)
T ss_pred ccC----Cc------EeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcCC------H-
Confidence 652 12 3333 6999887 79999999999999874 6899999999999995521 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHc------CcEEEEccC-----hHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~------gI~vv~~Vk-----~~~LerIar~TGA~ 214 (1398)
+.+..++++|.+.|++||+++++|++.|+++|.++ ||+++++++ +++|+|||++|||.
T Consensus 230 -----------~~~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~ 298 (542)
T PRK12849 230 -----------QDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGT 298 (542)
T ss_pred -----------HHHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCE
Confidence 12334788999999999999999999999999999 999999888 45599999999999
Q ss_pred Ecc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC------------------------
Q 000604 215 ITP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------ 265 (1398)
Q Consensus 215 Ii~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------ 265 (1398)
+++ +++++++..||+|+.|++.+ +++++|+||..+
T Consensus 299 ~v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~ 362 (542)
T PRK12849 299 VISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDRE 362 (542)
T ss_pred EecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 999 68899989999999999763 268889999875
Q ss_pred -----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 266 -----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 266 -----------~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
..|||+|||+|+.+++|+||+++||++++++++.++ ||+||||+|...
T Consensus 363 ~l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~l 421 (542)
T PRK12849 363 KLQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHH
Confidence 489999999999999999999999999999999996 999999999854
No 40
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=4.3e-31 Score=327.07 Aligned_cols=266 Identities=17% Similarity=0.200 Sum_probs=231.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
||+|+||||||+++..++++|+||..|+.||++|+...+..+..++...+.. ...+.+.|++++++|+..+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v 168 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKV 168 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999988777766655433210 1247899999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCC-------CcceecCCcEEEEeecccccccccChhH
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Le~~r~~~~~~s 146 (1398)
.++ ..|.|++.+| ...+|++++|++|++.+.+.. |++.++||+|+++++.|.- ..+
T Consensus 169 ~~~----------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~~------~~~ 231 (542)
T PRK00013 169 GKE----------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKISN------IQD 231 (542)
T ss_pred CcC----------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccCC------HHH
Confidence 652 1388999887 889999999999999999884 5899999999999996531 111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcC------cEEEEccC-----hHHHHHHHHHhCCeE
Q 000604 147 FNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLNVK-----RPLLERIARCTGALI 215 (1398)
Q Consensus 147 l~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~g------I~vv~~Vk-----~~~LerIar~TGA~I 215 (1398)
+..++++|.+.|++|||++++|++.|+++|..++ |.++++++ +++|+|||++|||.+
T Consensus 232 ------------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~ 299 (542)
T PRK00013 232 ------------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTV 299 (542)
T ss_pred ------------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEE
Confidence 3367888999999999999999999999999997 99999887 889999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc------------------------
Q 000604 216 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------ 266 (1398)
Q Consensus 216 i~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------ 266 (1398)
++ +++++++..||+|+.|++.. +++++|+||..+.
T Consensus 300 i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 363 (542)
T PRK00013 300 ISEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREK 363 (542)
T ss_pred ecccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHH
Confidence 99 79999999999999999763 3789999998765
Q ss_pred -----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 267 -----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 267 -----------g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
.|||+|||+|+.+++|+||+++||++++++++.++ +|+||||+|.+.
T Consensus 364 l~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 364 LQERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 78999999999999999999999999999999996 999999999854
No 41
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.97 E-value=9.5e-31 Score=325.46 Aligned_cols=265 Identities=14% Similarity=0.155 Sum_probs=228.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++|+|||+||+++..++++|+||..|+.||++|+...+..+..++...+.. ...+.+.|++++++|+..+
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~v 180 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKV 180 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999988777666654432210 0234678999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcc-eeEEeEEEeeccCCCC-------CcceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~dS-~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ + .|.+++||++.|| ++++|++|++.+.+.. |++.++||+|++++++|+. +.
T Consensus 181 g~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~------~~ 242 (555)
T PTZ00114 181 GKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS------IQ 242 (555)
T ss_pred CcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC------HH
Confidence 652 1 2889999999999 8999999999999875 5899999999999999883 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcC------cEEEEc-----cChHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLN-----VKRPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~g------I~vv~~-----Vk~~~LerIar~TGA~ 214 (1398)
.+..++++|.+.|++||+++++|++.|+++|..++ |.++++ +++++|+|||++|||.
T Consensus 243 ------------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~ 310 (555)
T PTZ00114 243 ------------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGAT 310 (555)
T ss_pred ------------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCE
Confidence 14456789999999999999999999999999996 999977 7789999999999999
Q ss_pred Ecccc------ccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCC-------------------------
Q 000604 215 ITPSI------DNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP------------------------- 263 (1398)
Q Consensus 215 Ii~si------d~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~------------------------- 263 (1398)
++++. +++++..||+|+.|++.+ + .+++|+||.
T Consensus 311 ~i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~ 374 (555)
T PTZ00114 311 VVSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLRSQIERTTSEYDK 374 (555)
T ss_pred EecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHH
Confidence 99998 778888999999999987 2 355666665
Q ss_pred ----------CCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 264 ----------RRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 264 ----------~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
.+..|||+|||+|+.+++|+||+++||++++++++.++ +|+||||+|...
T Consensus 375 ~~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~ 434 (555)
T PTZ00114 375 EKLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRA 434 (555)
T ss_pred HHHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHH
Confidence 56799999999999999999999999999999999977 999999999854
No 42
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=9.9e-31 Score=324.10 Aligned_cols=266 Identities=16% Similarity=0.206 Sum_probs=230.2
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++|+||||||+++..++++|+||..|+.||++|+...+..+...+...+.. ...+.+.|++++++|+..+
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~v 169 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKV 169 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999988776666554432211 1247889999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCC-------CcceecCCcEEEEeecccccccccChhH
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Le~~r~~~~~~s 146 (1398)
.++ ..|.|.+.. |...++++++|++|++.+.+.. ||+.++||+|++++++++.
T Consensus 170 g~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~--------- 229 (541)
T PRK12851 170 GNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISN--------- 229 (541)
T ss_pred ccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCc---------
Confidence 652 135677766 6788999999999999999884 9999999999999998541
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCc------EEEEc-----cChHHHHHHHHHhCCeE
Q 000604 147 FNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALI 215 (1398)
Q Consensus 147 l~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI------~vv~~-----Vk~~~LerIar~TGA~I 215 (1398)
++ .+..++++|.+.|++||+++++|++.|+++|..+|| .+|++ +++.+|+|||++|||.+
T Consensus 230 ~~---------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~ 300 (541)
T PRK12851 230 LQ---------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 300 (541)
T ss_pred HH---------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEE
Confidence 21 155678899999999999999999999999999997 88886 99999999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc------------------------
Q 000604 216 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------ 266 (1398)
Q Consensus 216 i~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------ 266 (1398)
++ +++++++..||+|+.|++++ + ++++|+||..+.
T Consensus 301 i~~~~~~~~~~~~~~~LG~~~~v~~~~--~--------------~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (541)
T PRK12851 301 ISEDLGIKLENVTLEQLGRAKKVVVEK--E--------------NTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREK 364 (541)
T ss_pred eccCCCCCcCcCCHHHcCCccEEEEEc--c--------------eEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99 68888888999999999875 2 688999987753
Q ss_pred -----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 267 -----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 267 -----------g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
.|||+|||+|+.+++|+||+++||++++++++.++ ||+||||+|.+.
T Consensus 365 l~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 365 LQERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 78999999999999999999999999999999996 999999999854
No 43
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=1.3e-30 Score=321.87 Aligned_cols=265 Identities=15% Similarity=0.186 Sum_probs=226.0
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
||+++||||||+++..++++|+||..|+.||+.|+...+..+..++...+.. ...-.+.|++++++|+..+
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 166 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKV 166 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999988776665554432210 0122688999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCc-ceeEEeEEEeeccCCCCC-------cceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~d-S~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ + .|.| .+||+..| +++++|++|++.+.|..| ++.++||+|++++++|... .
T Consensus 167 ~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~~------~ 228 (520)
T cd03344 167 GKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISSI------Q 228 (520)
T ss_pred ccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCCH------H
Confidence 642 1 2333 58999999 799999999999988765 4689999999999996331 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCc------EEEEcc-----ChHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLNV-----KRPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI------~vv~~V-----k~~~LerIar~TGA~ 214 (1398)
+ +..++++|.+.|++|||++++|++.|+++|.++|| .+++++ ++++|+|||++|||.
T Consensus 229 ~------------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~ 296 (520)
T cd03344 229 E------------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGT 296 (520)
T ss_pred H------------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCE
Confidence 1 33467899999999999999999999999999999 888766 899999999999999
Q ss_pred Ecc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC------------------------
Q 000604 215 ITP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------ 265 (1398)
Q Consensus 215 Ii~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------ 265 (1398)
+++ +++.++++.||+|+.|++.+ + ++++|+||..+
T Consensus 297 ~~~~~~~~~~~~~~~~~LG~~~~v~~~~--~--------------~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 360 (520)
T cd03344 297 VISEELGLKLEDVTLEDLGRAKKVVVTK--D--------------DTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKE 360 (520)
T ss_pred EecccccCCcccCCHHHCCcceEEEEee--c--------------eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999 88888888999999999875 2 68999999765
Q ss_pred -----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 266 -----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 266 -----------~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
..|||+|||+|+.+++|+||+++||++++++++.++ +|+||||+|+..
T Consensus 361 ~l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~ 419 (520)
T cd03344 361 KLQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRA 419 (520)
T ss_pred HHHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHH
Confidence 589999999999999999999999999999999996 999999999853
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.97 E-value=1.7e-30 Score=321.40 Aligned_cols=265 Identities=17% Similarity=0.204 Sum_probs=226.4
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++++||||||+++..++++|+||..|+.||++|+...+..+..++...+.. ...+.+.|++++++|+..+
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 167 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKV 167 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999988777776655433210 1355789999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEEeEEEeeccCCCCC-------cceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~-~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ + .|.|.+ ||.. .+|++++|++|++.+.+..| ++.++||+|+++++.|+-
T Consensus 168 ~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~-------- 227 (524)
T TIGR02348 168 GKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN-------- 227 (524)
T ss_pred CcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC--------
Confidence 652 1 233443 6666 67999999999999998865 899999999999996442
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHc------CcEEEEccCh-----HHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVKR-----PLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~------gI~vv~~Vk~-----~~LerIar~TGA~ 214 (1398)
. +.+..++++|.+.|++||+++++|++.|+++|..+ ||+++++++. ++|+|||++|||.
T Consensus 228 -~---------~~i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~ 297 (524)
T TIGR02348 228 -I---------KDLLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQ 297 (524)
T ss_pred -H---------HHHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCE
Confidence 1 12466788999999999999999999999999997 8999988855 7999999999999
Q ss_pred Ecc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc-----------------------
Q 000604 215 ITP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL----------------------- 266 (1398)
Q Consensus 215 Ii~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~----------------------- 266 (1398)
+++ +++++++..||+|+.|++.. +++++|+||..+.
T Consensus 298 ~i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~ 361 (524)
T TIGR02348 298 VISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDRE 361 (524)
T ss_pred EecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 999 89999999999999998864 2689999987654
Q ss_pred ------------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 267 ------------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 267 ------------g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
.+||+|||+|+.+++|+||+++||++++++++.++ |||||||+|++.
T Consensus 362 ~l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~ 420 (524)
T TIGR02348 362 KLQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRA 420 (524)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 58899999999999999999999999999999996 999999999854
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=6.8e-30 Score=316.84 Aligned_cols=266 Identities=15% Similarity=0.188 Sum_probs=224.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++++|||+||++|..++++|+||..|+.||++|+...+..+...+...+.. ...-.+.|++++++|+..+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~v 169 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKV 169 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999887666665544322210 0123578999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCC-------cceecCCcEEEEeecccccccccChhH
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLAS 146 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Le~~r~~~~~~s 146 (1398)
.++ +.+|+ +..+..| .++++++|++|++.+.+..| ++.++||+|+++++.++ +
T Consensus 170 g~~----g~i~v----~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~---------~ 229 (544)
T PRK12850 170 GKE----GVITV----EEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKIS---------N 229 (544)
T ss_pred ccc----Cceee----EEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccC---------C
Confidence 652 23444 2223444 68999999999999998764 89999999999999642 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCc------EEEEc-----cChHHHHHHHHHhCCeE
Q 000604 147 FNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALI 215 (1398)
Q Consensus 147 l~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI------~vv~~-----Vk~~~LerIar~TGA~I 215 (1398)
+ +.+..++++|.+.|++||+++++|++.|+++|.++|| .+|++ +++.+|+|||++|||++
T Consensus 230 ~---------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~ 300 (544)
T PRK12850 230 L---------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQV 300 (544)
T ss_pred H---------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEE
Confidence 2 1266688899999999999999999999999999999 99888 99999999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc------------------------
Q 000604 216 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------ 266 (1398)
Q Consensus 216 i~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------ 266 (1398)
++ +++++++..||+|+.|++.+ +++++|+||..+.
T Consensus 301 i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (544)
T PRK12850 301 ISEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREK 364 (544)
T ss_pred eccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99 78888888999999998774 2688999998753
Q ss_pred -----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 267 -----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 267 -----------g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
.|||+|||+|+.+++|+||+++||++++++++.++ ||+||||+|...
T Consensus 365 l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~ 422 (544)
T PRK12850 365 LQERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (544)
T ss_pred HHHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 79999999999999999999999999999999995 999999999854
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=5.5e-29 Score=309.42 Aligned_cols=265 Identities=17% Similarity=0.195 Sum_probs=224.5
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCCh---------hhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSE---------EDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~~---------~~w~~~ls~l~v~Av~~v 73 (1398)
|++++||||||++|..++++|+||..|+.||++|+...+..+..++...+... ..-.+.|++|+++|+..|
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~v 169 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKV 169 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999887766655543322110 112477999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEEeEEEeeccCCCC-------CcceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~-~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ +. |.|. .||.. .++++++|++|++.+.+.. |+..++||+|+++++.|..
T Consensus 170 g~~----g~------i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~-------- 229 (545)
T PRK12852 170 GNE----GV------ITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSG-------- 229 (545)
T ss_pred ccC----Cc------eeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCC--------
Confidence 753 12 3333 27776 7999999999999999874 9999999999999874421
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHc------CcEEEEccC-----hHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~------gI~vv~~Vk-----~~~LerIar~TGA~ 214 (1398)
. +++..+++.|.+.|++|||++++|++.|+++|..+ ||++|++.+ +.+|+|||++|||+
T Consensus 230 -~---------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~ 299 (545)
T PRK12852 230 -L---------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQ 299 (545)
T ss_pred -H---------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCE
Confidence 1 25555789999999999999999999999999986 899999766 99999999999999
Q ss_pred Ecc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC------------------------
Q 000604 215 ITP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------ 265 (1398)
Q Consensus 215 Ii~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------ 265 (1398)
+++ +++++++..||+|+.|++.+ +.+++|+||..+
T Consensus 300 ~i~~~~~~~l~~~~~~~lG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (545)
T PRK12852 300 LISEDLGIKLENVTLKMLGRAKKVVIDK----------------ENTTIVNGAGKKADIEARVGQIKAQIEETTSDYDRE 363 (545)
T ss_pred EEecCcCCCcCCCCHHHCCCCcEEEEEc----------------cEEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 999 78889889999999998875 257889988763
Q ss_pred -----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 266 -----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 266 -----------~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
..|||+|||+|+.+++|+||.++||++++++++.++ ||+||||+|.+.
T Consensus 364 ~l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~ 422 (545)
T PRK12852 364 KLQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRA 422 (545)
T ss_pred HHHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHH
Confidence 679999999999999999999999999999999996 999999999854
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.96 E-value=2.2e-28 Score=303.04 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=219.3
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++|+||||||++|..++++|+||..|+.||++|+...+..+..++...... ...+.+.|++|+++|+..+
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~v 168 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKV 168 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999887766665554332210 1246789999999999998
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCC---cc----eecCCcEEEEeecccccccccChhH
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM---TS----QYRNPRLLILGGALEYQRVPNQLAS 146 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~M---p~----~i~nprIlll~~~Le~~r~~~~~~s 146 (1398)
.++ + .+|+ + -.+|...++++++|++|++...+..| ++ .++||+|++++++|++.+
T Consensus 169 g~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------- 230 (529)
T CHL00093 169 GRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------- 230 (529)
T ss_pred ccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH-------
Confidence 752 1 2333 1 13345677899999999999998754 44 599999999999999742
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHH--HH----cCcEEEEccC-----hHHHHHHHHHhCCeE
Q 000604 147 FNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLL--LA----KEISLVLNVK-----RPLLERIARCTGALI 215 (1398)
Q Consensus 147 l~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L--~~----~gI~vv~~Vk-----~~~LerIar~TGA~I 215 (1398)
..+..++++|...|+++|+++++|++.|+.+| .+ +||.++++++ +.+|+|||++|||.+
T Consensus 231 ----------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~ 300 (529)
T CHL00093 231 ----------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQV 300 (529)
T ss_pred ----------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEE
Confidence 23566788999999999999999999655555 77 5999999994 488999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEc---------CCCC----------------
Q 000604 216 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG---------CPRR---------------- 265 (1398)
Q Consensus 216 i~-----sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~g---------c~~~---------------- 265 (1398)
++ +++++++..||+|+.|++.. +++++|++ |...
T Consensus 301 i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l 364 (529)
T CHL00093 301 ITEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKL 364 (529)
T ss_pred ecccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHH
Confidence 99 78999989999999999873 25777875 3321
Q ss_pred ---------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 266 ---------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 266 ---------~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
..|||+|||+|+.+++|.||.++||++++++++.++ +||||||+|...
T Consensus 365 ~eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~ 421 (529)
T CHL00093 365 QERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHL 421 (529)
T ss_pred HHHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHH
Confidence 377899999999999999999999999999999996 999999999854
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.96 E-value=6e-28 Score=299.34 Aligned_cols=265 Identities=15% Similarity=0.160 Sum_probs=221.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC---------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~ls~l~v~Av~~v 73 (1398)
|++|+|||+||+++.++++.|+||..|+.||.+|+...+..+...+...+.. .....+.|++++++|+..+
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~v 169 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKV 169 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 7899999999999999999999999999999999887665554443322211 1234477999999999988
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCC-CcceeEEeEEEeeccCCCCC-------cceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~-~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ + .|.|..+ +.. .++++++|++|++.+.|..| +..++||+|++.+.. +.
T Consensus 170 g~~----g------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~---------i~ 228 (546)
T PRK14104 170 GNE----G------VITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK---------LS 228 (546)
T ss_pred ccC----C------ceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---------hc
Confidence 652 1 3445443 455 58999999999999998855 788999999999722 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHH------cCcEEEEccC-----hHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLA------KEISLVLNVK-----RPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~------~gI~vv~~Vk-----~~~LerIar~TGA~ 214 (1398)
++ +.+..++++|...|++||+++++|++.|+++|.. .||.+|++++ +.+|+|||++|||.
T Consensus 229 ~~---------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~ 299 (546)
T PRK14104 229 SL---------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQ 299 (546)
T ss_pred CH---------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCE
Confidence 22 2255679999999999999999999999999985 6899998887 89999999999999
Q ss_pred Eccc-----cccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC------------------------
Q 000604 215 ITPS-----IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------ 265 (1398)
Q Consensus 215 Ii~s-----id~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------ 265 (1398)
++++ ++++++..||+|+.+++ +. +.+++|+||..+
T Consensus 300 ~i~~~~~~~l~~~~~~~LG~a~~v~~---~~-------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~ 363 (546)
T PRK14104 300 AISEDLGIKLENVTLQMLGRAKKVMI---DK-------------ENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDRE 363 (546)
T ss_pred EEecCCCCCcCcCCHHHCCceeEEEE---cC-------------CEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9999 88898899999999885 32 378889999875
Q ss_pred -----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 266 -----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 266 -----------~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
..|||+|||+|+.+++|+||+++||++++++++.++ ||+||||+|...
T Consensus 364 ~l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~ 422 (546)
T PRK14104 364 KLQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRA 422 (546)
T ss_pred HHHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHH
Confidence 789999999999999999999999999999999997 999999999854
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.96 E-value=2.7e-28 Score=304.08 Aligned_cols=276 Identities=17% Similarity=0.178 Sum_probs=225.1
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCC--------hhhHHHHHHHHHHHHHhhcC
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS--------EEDWLGIITTIAWQAANFVK 74 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~--------~~~w~~~ls~l~v~Av~~v~ 74 (1398)
|++++||++||+++..++++|+||..|+.||.+|+...+..+..++...+.. ...+.+.|++|+++|+..|.
T Consensus 145 TTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg 224 (600)
T PLN03167 145 TTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVG 224 (600)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 7899999999999999999999999999999999887766665544322110 12345789999999999986
Q ss_pred CCCCCCCCCCccCceEEEEccCCCCCcc-eeEEeEEEeeccCCC-------CCcceecCCcEEEEeecccccccccChhH
Q 000604 75 PDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHK-------RMTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1398)
Q Consensus 75 ~~~~~~~~~Di~~~IkIkki~GG~~~dS-~lI~GvV~~K~~a~k-------~Mp~~i~nprIlll~~~Le~~r~~~~~~s 146 (1398)
++ + .++ ...||+..|+ ++++|++|++...+. +|++.++||+|||+++.|+. ..+
T Consensus 225 ~~---g-~i~--------v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i~~------~~~ 286 (600)
T PLN03167 225 RK---G-VVT--------LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKITN------ARD 286 (600)
T ss_pred cC---C-cEE--------eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEccccCC------HHH
Confidence 52 1 222 2369999998 999999999999988 89999999999999975322 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHH------HcCcEEEEccC-----hHHHHHHHHHhCCeE
Q 000604 147 FNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLL------AKEISLVLNVK-----RPLLERIARCTGALI 215 (1398)
Q Consensus 147 l~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~------~~gI~vv~~Vk-----~~~LerIar~TGA~I 215 (1398)
+ ..+++++...|+++|++.++|++.|+++|. ..+|.++++++ .++|++||.+|||.+
T Consensus 287 l------------~~~le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~ 354 (600)
T PLN03167 287 L------------IGILEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTV 354 (600)
T ss_pred H------------HHHHHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEE
Confidence 2 224457888999999999999999999999 88999999996 889999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEE-----eccccccccccCCCCCceEEEEEcCC------------C------Cce
Q 000604 216 TP-----SIDNISTTRLGHCELFKLEK-----VSEEHETSNQFNKKPSKTLMYFEGCP------------R------RLG 267 (1398)
Q Consensus 216 i~-----sid~l~~~~LG~C~~f~v~~-----~~~e~~~~~~~~~~~~Kt~i~f~gc~------------~------~~g 267 (1398)
++ +++++++..||+|+.|++.+ ++++ +.+ ....+++.+|++|. . +.+
T Consensus 355 i~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~-~~~----~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~ 429 (600)
T PLN03167 355 IREEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG-STQ----EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGG 429 (600)
T ss_pred ecccccCCcccCCHHHCceeeEEEEecccceeeCCC-ccH----HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCc
Confidence 99 78888889999999999987 5541 000 01124677888775 1 236
Q ss_pred eEEE-eccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccccc
Q 000604 268 CMVL-LRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 268 ~TIl-LRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~~ 314 (1398)
+||| |||+|+.+++|+||.++||++++++++.++ +|+||||+|...
T Consensus 430 ~aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 430 VAVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred EEEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 7877 999999999999999999999999999999 999999999854
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.93 E-value=4.6e-26 Score=251.27 Aligned_cols=194 Identities=19% Similarity=0.247 Sum_probs=178.9
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHHHHHhCCcccccCChhhHHHHHHHHHHHHHhhcCCCCCCCCC
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGS 82 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~i~~~sk~~~~~w~~~ls~l~v~Av~~v~~~~~~~~~ 82 (1398)
|.+|+|||.++..++.++..++||-.|..||..+...++..+..++- .-.
T Consensus 94 TgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~-----~~e------------------------- 143 (400)
T KOG0357|consen 94 TGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISD-----PFE------------------------- 143 (400)
T ss_pred cccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcc-----ccc-------------------------
Confidence 67899999999999999999999999999999999888777666541 000
Q ss_pred CCccCceEEEEccCCCCCcceeEEeEEEeeccCCCCCcceecCCcEEEEeecccccccccChhHHHHHHHHHHHHHHHHH
Q 000604 83 MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQQENDHLKMV 162 (1398)
Q Consensus 83 ~Di~~~IkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Le~~r~~~~~~sl~~ii~~qE~e~L~~~ 162 (1398)
| ..+
T Consensus 144 ----------------------------------------------------------------f------------~em 147 (400)
T KOG0357|consen 144 ----------------------------------------------------------------F------------EEM 147 (400)
T ss_pred ----------------------------------------------------------------H------------HHH
Confidence 3 235
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEecccc
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEH 242 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~ 242 (1398)
++.|+..|+++++|||+.++.|.++|.+++..+++||...+||-||-+||+.|++++.+|++.+||+|+.+++.+|+..
T Consensus 148 i~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgtt- 226 (400)
T KOG0357|consen 148 IQQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTT- 226 (400)
T ss_pred HHHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccc-
Confidence 6689999999999999999999999999999999999999999999999999999999999999999999999999973
Q ss_pred ccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCccccc
Q 000604 243 ETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPK 313 (1398)
Q Consensus 243 ~~~~~~~~~~~Kt~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~~ 313 (1398)
.++++++|.|+++++.||.+||+|..+++|.||++||||||++|++++.++|+|||+.|..
T Consensus 227 ----------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 227 ----------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ----------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 3689999999999999999999999999999999999999999999999999999999974
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=97.60 E-value=0.00051 Score=82.99 Aligned_cols=278 Identities=17% Similarity=0.161 Sum_probs=169.6
Q ss_pred CcceeeechhhHHHHHhhhCCCChHHHHHHHHHHHHHHH--HHHhCCcccccCC-------hhhHHHHHHHHHHHHHhhc
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSEL--LRAEGIKLGKEDS-------EEDWLGIITTIAWQAANFV 73 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qL--l~~~~i~~~sk~~-------~~~w~~~ls~l~v~Av~~v 73 (1398)
|.+.+||.++..++...+..|..|.++-.|-..+...-. |+....++.+..+ ...--..+-.++-+|+..|
T Consensus 103 ttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kv 182 (550)
T KOG0356|consen 103 TTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKV 182 (550)
T ss_pred chHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 566889999999999999999999999888777654322 2222222211100 0011123444666787777
Q ss_pred CCCCCCCCCCCccCceEEEEccCCCCCc-ceeEEeEEEeeccCC-------CCCcceecCCcEEEEeecccccccccChh
Q 000604 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKH-------KRMTSQYRNPRLLILGGALEYQRVPNQLA 145 (1398)
Q Consensus 74 ~~~~~~~~~~Di~~~IkIkki~GG~~~d-S~lI~GvV~~K~~a~-------k~Mp~~i~nprIlll~~~Le~~r~~~~~~ 145 (1398)
.++ .-|.|+ .|....| =++++|+=|++.... +.+..+++||.++|..-. .+.+.
T Consensus 183 G~~----------GVItv~--~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk------i~~v~ 244 (550)
T KOG0356|consen 183 GRK----------GVITVK--DGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK------ISSVQ 244 (550)
T ss_pred CcC----------CeEEee--cCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh------hhHHH
Confidence 652 122222 3555544 367888888887765 345566788888874311 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEE-----------EccChHHHHHHHHHhCCe
Q 000604 146 SFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV-----------LNVKRPLLERIARCTGAL 214 (1398)
Q Consensus 146 sl~~ii~~qE~e~L~~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv-----------~~Vk~~~LerIar~TGA~ 214 (1398)
++-+.++ .......| +|+.-..|+..|+..|.=++.-+. .+-+...+..||-+|||.
T Consensus 245 ~ivp~LE-----------~A~~~~~P-LliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~ 312 (550)
T KOG0356|consen 245 SIVPALE-----------LALAKRRP-LLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGAT 312 (550)
T ss_pred HHhHHHH-----------HhhhccCc-eEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhh
Confidence 3333222 22233344 555567899999998876553322 344566799999999998
Q ss_pred Eccc------cccCCCCCcceeeeEEEEEeccccccccccCCCC-------Cc------eEEEEEc-C------CCCcee
Q 000604 215 ITPS------IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKP-------SK------TLMYFEG-C------PRRLGC 268 (1398)
Q Consensus 215 Ii~s------id~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~-------~K------t~i~f~g-c------~~~~g~ 268 (1398)
++.. ++.....+||.|..+.+..-.. ....+.+++.. -| +..+-.. . -....+
T Consensus 313 v~~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gva 391 (550)
T KOG0356|consen 313 VFGEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVA 391 (550)
T ss_pred hhccchhhcccccCchhhcCcceeEEEecCcc-eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeE
Confidence 8743 3345568999999887764221 11111000000 00 0000000 0 012467
Q ss_pred EEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeeeCCCcccc
Q 000604 269 MVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 312 (1398)
Q Consensus 269 TIlLRG~s~~~L~evkr~l~dal~v~~~~~le~~~l~ggGa~e~ 312 (1398)
+|-+-|.++.++++-|-.+.||+++.++++.|+ ++||||+.+.
T Consensus 392 vi~vGg~se~Ev~ekk~rv~dalnat~aaveeG-ivpGGG~all 434 (550)
T KOG0356|consen 392 VIKVGGHSEVEVNEKKDRVEDALNATRAAVEEG-IVPGGGTALL 434 (550)
T ss_pred EEEecCcchhhhhhhhhhHHHHHHHHHHHhhcC-cccCCchHHH
Confidence 888899999999999999999999999998765 8899999875
No 52
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=96.05 E-value=0.0051 Score=81.68 Aligned_cols=98 Identities=7% Similarity=-0.194 Sum_probs=79.1
Q ss_pred CCCchhhhcccceeeecCcEEEEEEEecCCcCCCCCCCCcEEEEeccccCCCCCCCCCCcceEecccccccccHHHHHHH
Q 000604 525 RSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLEL 604 (1398)
Q Consensus 525 ~sC~~pm~~H~r~yvH~~g~i~I~ve~~~~~~lp~~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mS~~tw~~SFgKfLEL 604 (1398)
..|+.||..|++.++|+.- ...-+.. .+.++++.+ +|.||++|..|+. .+-. ++...+|++++|+++|-
T Consensus 660 ~~~~~~~~~~lv~~~es~~--~~~~~s~-~~~~~~l~e-~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~~e~ 728 (1598)
T KOG0230|consen 660 SYSKGPKQNGLVPAHESVL--NDLHEST-LSILSKLPE-TRSGTHEGNEDKG------PGLE-PELANNQNIQRPEETEE 728 (1598)
T ss_pred hhcCchhhccccccccccc--ccccccc-ccccccccc-hhcccchhccccC------cccc-ccccccccccchhhhhh
Confidence 3599999999999999987 2222222 235677664 8999999999996 3666 99999999999999999
Q ss_pred hccCccccCccCCCCCccccceeeecccCCeE
Q 000604 605 SFSNHATANRIASCGHSLQRDCLRYYGFGSMI 636 (1398)
Q Consensus 605 ~F~~~~~~~~~~~C~H~~~rDhvryF~~~~~v 636 (1398)
. +.....+...|.|.+---|.||| +.++|
T Consensus 729 ~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 729 Q--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred h--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 8 44556677889999999999999 98886
No 53
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=61.27 E-value=24 Score=33.50 Aligned_cols=46 Identities=13% Similarity=0.073 Sum_probs=35.9
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHH
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIAR 209 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar 209 (1398)
++.|...++++|+| ++|..-+...|.++||.++.......=+.|.+
T Consensus 46 ~~~l~~~~v~~li~-~~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 46 AKFLAEEGVDVLIC-GGIGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp HHHHHHTTESEEEE-SCSCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred HHHHHHcCCCEEEE-eCCCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 34455689999999 56899999999999999999865555444443
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=52.24 E-value=35 Score=36.78 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=36.0
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEE-EEccC--h----HHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL-VLNVK--R----PLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~v-v~~Vk--~----~~LerIar~TGA 213 (1398)
+++|++++|||||.......-..+.|.+.||.+ +.... . ..++.+++++|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 457788999999997665555778899999954 43332 1 246677777765
No 55
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=52.09 E-value=33 Score=33.22 Aligned_cols=38 Identities=13% Similarity=0.125 Sum_probs=33.0
Q ss_pred HHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000604 162 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 200 (1398)
Q Consensus 162 ~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk 200 (1398)
+++.|...++++|+|. ++.+-+.+.|.++||.++.-..
T Consensus 55 ~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 55 AAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 4555666999999995 6999999999999999998776
No 56
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=47.25 E-value=10 Score=38.92 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=18.3
Q ss_pred CCcccCcceeeeecccceeeEeeeecccc
Q 000604 1316 VDVMDYSLLVGVDEERKELVLGIIDFMRQ 1344 (1398)
Q Consensus 1316 ~~imDYSLLvgi~~~~~~~~~GIID~L~~ 1344 (1398)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 4588899999965 999999853
No 57
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=47.02 E-value=40 Score=40.91 Aligned_cols=52 Identities=19% Similarity=0.225 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC---h----HHHHHHHHHhCC
Q 000604 162 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK---R----PLLERIARCTGA 213 (1398)
Q Consensus 162 ~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk---~----~~LerIar~TGA 213 (1398)
-+++|++++|||||....-.....+.|.+.||.++.--. . +.++.|++++|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 478899999999999765566678889999999865432 1 345667777665
No 58
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=46.47 E-value=45 Score=37.54 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=38.6
Q ss_pred HHHHHhcCCCEEEecCCCcHH-HHHHHHHcCcEEEEcc--C----hHHHHHHHHHhCCe
Q 000604 163 ISKIEALRPNVLLVEKSVSSY-AQDLLLAKEISLVLNV--K----RPLLERIARCTGAL 214 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~-A~~~L~~~gI~vv~~V--k----~~~LerIar~TGA~ 214 (1398)
+++|++++|||||+...-... ..+.|.+.||.++..- . ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 567888999999997655444 4888999999876532 1 23478888888874
No 59
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=46.23 E-value=37 Score=39.61 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=40.2
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEc-c-C----hHHHHHHHHHhCCe
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN-V-K----RPLLERIARCTGAL 214 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~-V-k----~~~LerIar~TGA~ 214 (1398)
+++|++++||+||+....++...+.|.+.||.|+.- . . ...++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 567889999999998888888889999999977642 2 1 22477888888764
No 60
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=44.58 E-value=12 Score=38.34 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=18.3
Q ss_pred CCcccCcceeeeecccceeeEeeeecccc
Q 000604 1316 VDVMDYSLLVGVDEERKELVLGIIDFMRQ 1344 (1398)
Q Consensus 1316 ~~imDYSLLvgi~~~~~~~~~GIID~L~~ 1344 (1398)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 4688899999965 899999853
No 61
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=43.73 E-value=69 Score=32.90 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000604 162 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 214 (1398)
Q Consensus 162 ~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~ 214 (1398)
+.+-|++.|+|+|+| .+|.+-|..+|.++||-+..-....+=+.|-....+.
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 456678899999999 6899999999999999999988866656666555543
No 62
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=43.51 E-value=54 Score=31.59 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.5
Q ss_pred HHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000604 162 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 200 (1398)
Q Consensus 162 ~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk 200 (1398)
...-+...++++|+|.+ |..-+...|.++||.++.-..
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 34455668999999974 999999999999999998876
No 63
>PLN02667 inositol polyphosphate multikinase
Probab=38.69 E-value=44 Score=39.32 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=44.3
Q ss_pred eccCceEecccC-----HHHHHHHHHHHHHHHHHHHhcCC--CCCCchhhheeeeEEEEeeecCCCeeEEEEEEEeeccc
Q 000604 1176 SLDERFIIKQVK-----KTELESFEEFAPEYFKYLTDSLN--SRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLF 1248 (1398)
Q Consensus 1176 T~D~rfiiK~is-----~~E~~~f~~~lp~Yf~y~~~~~~--~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf 1248 (1398)
+.|+..|+|-+. ..|+++-..+. .... ....-++++++|...+... .|+ .+||||||-
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~--------~~~~~~~~L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFS--------SDTRVPDHIRRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHh--------ccccchHHHHhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 347778899997 68887765543 1100 0123578999999887542 233 379999999
Q ss_pred CCCCceeEeeCC
Q 000604 1249 FRRSISRVYDLK 1260 (1398)
Q Consensus 1249 ~~~~i~~~yDLK 1260 (1398)
++..---+=|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 874333344444
No 64
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=38.26 E-value=60 Score=36.66 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=35.8
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC----hHHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK----RPLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk----~~~LerIar~TGA 213 (1398)
+++|++++||+||+...... ..+.|.+.|..++.... .+.++++++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 56788899999999877666 77788888866654432 3356666666664
No 65
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=37.02 E-value=1.3e+02 Score=30.99 Aligned_cols=78 Identities=22% Similarity=0.345 Sum_probs=54.3
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHHhcc-------------C--ccCc-cCCCCcce----eEEeeccCceEe-------
Q 000604 1131 TSYFAKQFDSLRKKCCPSGVDFVRSLSR-------------S--RKWS-AQGGKSNV----FFAKSLDERFII------- 1183 (1398)
Q Consensus 1131 ~~y~p~~F~~LR~~~~~~~~~~~~SL~~-------------~--~~~~-~~gGKSgs----~F~~T~D~rfii------- 1183 (1398)
.+|-...|..+-+..++++.++...+.. + .+|. ...||||. .||+..|.-|.+
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 4566789999999999998887665442 1 2232 35799983 344444443433
Q ss_pred -cccCHHHHHHHHHHHHHHHHHHHhc
Q 000604 1184 -KQVKKTELESFEEFAPEYFKYLTDS 1208 (1398)
Q Consensus 1184 -K~is~~E~~~f~~~lp~Yf~y~~~~ 1208 (1398)
-.||..|++.|.+++..|.++-.+.
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~ 107 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQ 107 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 2468999999999999999887653
No 66
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=31.80 E-value=1e+02 Score=34.23 Aligned_cols=52 Identities=19% Similarity=0.289 Sum_probs=39.7
Q ss_pred HHHHHhcCCCEEEecCCC-cHHHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCCe
Q 000604 163 ISKIEALRPNVLLVEKSV-SSYAQDLLLAKEISLVLNVKR-------PLLERIARCTGAL 214 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~V-s~~A~~~L~~~gI~vv~~Vk~-------~~LerIar~TGA~ 214 (1398)
+++|++++||+||..... ......-+.+.||.++.--.. ..++.|++++|..
T Consensus 53 ~E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 53 LEAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 367888999999999998 778888888999988875553 3568888888874
No 67
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=31.56 E-value=1e+02 Score=35.01 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=36.5
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC--hH----HHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK--RP----LLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk--~~----~LerIar~TGA 213 (1398)
+++|++++||+||+.........+.|.+.+..++.... .. .++.+++.+|.
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~ 114 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGK 114 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCc
Confidence 45778899999999888776566677777766666553 33 36777777765
No 68
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=31.21 E-value=90 Score=35.87 Aligned_cols=51 Identities=20% Similarity=0.257 Sum_probs=34.5
Q ss_pred HHHHHhcCCCEEEecCC-CcHHHHHHHHHcCcEEEEcc--Ch----HHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKS-VSSYAQDLLLAKEISLVLNV--KR----PLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~-Vs~~A~~~L~~~gI~vv~~V--k~----~~LerIar~TGA 213 (1398)
+++|++++|||||+..+ -..-..+.|.+.||.++.-- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWVDATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEeCCCCHHHHHHHHHHHHHHcCC
Confidence 45788899999998654 34556688999999887642 11 234556666554
No 69
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=30.34 E-value=1.6e+02 Score=29.62 Aligned_cols=51 Identities=16% Similarity=0.175 Sum_probs=44.6
Q ss_pred HHhcCCCEEEecCCC------cHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 166 IEALRPNVLLVEKSV------SSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 166 I~~~gpnVVlvek~V------s~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
+...+|.+|+|+.++ ++.|.++|.+.|+-|+.---+..|+|.-..-|+.=+
T Consensus 57 ~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~krV 113 (121)
T COG1504 57 LLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKKRV 113 (121)
T ss_pred HHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccceE
Confidence 444899999999885 788999999999999999999999999998887443
No 70
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=30.29 E-value=1.2e+02 Score=30.07 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=26.9
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEE
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 197 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~ 197 (1398)
++.|++++|||||+..+......+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 34667789999999988776677888898855544
No 71
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=30.10 E-value=31 Score=36.70 Aligned_cols=50 Identities=24% Similarity=0.362 Sum_probs=29.0
Q ss_pred EEEcCHHH---HHHHHHHcCCChHHHHHHhccCccCccCCCCcceeEEeeccCceEecc
Q 000604 1130 VTSYFAKQ---FDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQ 1185 (1398)
Q Consensus 1130 ~~~y~p~~---F~~LR~~~~~~~~~~~~SL~~~~~~~~~gGKSgs~F~~T~D~rfiiK~ 1185 (1398)
++-|||.- =..|..+.++.|-+=+-| ..-+.|+-+++||+|.|+||||=-
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS------~GDt~GRRaALFYRtSdEr~ill~ 154 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVIS------MGDTTGRRAALFYRTSDERYILLF 154 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEE------EEETT--EEEEEEETTTTEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceee------ecCCCCceEEEEEeccCceEEEEE
Confidence 66788732 235666655555432223 234679999999999999999853
No 72
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=29.01 E-value=1.4e+02 Score=35.68 Aligned_cols=55 Identities=24% Similarity=0.204 Sum_probs=45.9
Q ss_pred HHHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 161 MVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 161 ~~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
.+++-|+..+|.+|+...+.... .+.|.++||.++..|..-..-+.+.-.||+.+
T Consensus 73 ~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 73 AQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 35677788999999999888776 48899999999999988777777888888776
No 73
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.59 E-value=1.3e+02 Score=34.41 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=34.6
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKR-------PLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~-------~~LerIar~TGA 213 (1398)
+++|++++||||++...-.....+++..++|.++.--.. ..++.+++++|-
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 122 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGK 122 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCc
Confidence 567888999999987665556666666777766642111 246777777775
No 74
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.05 E-value=73 Score=34.28 Aligned_cols=34 Identities=21% Similarity=0.325 Sum_probs=27.5
Q ss_pred HHHHHhcCCCEEEecCCCcHH-HHHHHHHcCcEEE
Q 000604 163 ISKIEALRPNVLLVEKSVSSY-AQDLLLAKEISLV 196 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~-A~~~L~~~gI~vv 196 (1398)
+++|++++|||||........ ..+.|.+.||.++
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpvv 96 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPVL 96 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCEE
Confidence 688999999999997665553 7888999998553
No 75
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.00 E-value=1.2e+02 Score=36.03 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=37.1
Q ss_pred HHHHHhcCCCEEEecCCCc-----HHHHHHHHHcCcEEEEcc--------ChHHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVS-----SYAQDLLLAKEISLVLNV--------KRPLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs-----~~A~~~L~~~gI~vv~~V--------k~~~LerIar~TGA 213 (1398)
+++|++++|||||...... .-+.+.|.+.||.++.-- -...++.+++++|.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 6688899999999875542 457788999998876521 13457888888876
No 76
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=23.78 E-value=1.3e+02 Score=34.07 Aligned_cols=51 Identities=24% Similarity=0.264 Sum_probs=32.7
Q ss_pred HHHHHhcCCCEEEecCCCcHH-HHHHHHH-cCcEEEEccCh-------HHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSY-AQDLLLA-KEISLVLNVKR-------PLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~-A~~~L~~-~gI~vv~~Vk~-------~~LerIar~TGA 213 (1398)
+++|++++||+||+....... ..+.|.+ +||.++.--.. ..++.+++.+|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 467888999999998766541 3344544 88876543322 235666777664
No 77
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=23.54 E-value=2.3e+02 Score=33.70 Aligned_cols=55 Identities=11% Similarity=0.032 Sum_probs=43.2
Q ss_pred HHHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000604 162 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 216 (1398)
Q Consensus 162 ~V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk~~~LerIar~TGA~Ii 216 (1398)
+++-+++.+|.+|.+..+......+.|.++|+.++-.|..-+.-+.+.-.|++++
T Consensus 79 ~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 79 LVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 5566677899999998887777888899999999888877666666666677665
No 78
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=22.82 E-value=48 Score=27.51 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=21.2
Q ss_pred chHHHHHHhhccCCCCCCCCchhhhc
Q 000604 508 PLGRYLHGDLFNQTSCCRSCNESAEA 533 (1398)
Q Consensus 508 tLGqFLe~~c~~~~~~C~sC~~pm~~ 533 (1398)
-+|++|.+=.--.+..||.|+.|++.
T Consensus 4 ~m~~~LL~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 4 KMGEYLLQGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HHHHHHHHhHhHhcCccCCCCCeeEE
Confidence 36888887776778899999999875
No 79
>cd00853 NifX NifX belongs to a family of iron-molybdenum cluster-binding proteins that includes NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. The protein is part of the nitrogen fixation gene cluster in nitrogen-fixing bacteria and has sequence similarity to other members of the cluster.
Probab=21.95 E-value=2.1e+02 Score=27.87 Aligned_cols=31 Identities=13% Similarity=0.061 Sum_probs=27.8
Q ss_pred cCCCEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000604 169 LRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 200 (1398)
Q Consensus 169 ~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk 200 (1398)
.++++||| ++|..-|...|.++||.++.-..
T Consensus 60 ~~~~vvi~-~~iG~~a~~~L~~~GI~v~~~~~ 90 (102)
T cd00853 60 EDCAILYC-AAIGGPAAARLVRAGIHPIKVPE 90 (102)
T ss_pred CCCcEEEE-hhcChhHHHHHHHcCCEEEEcCC
Confidence 48999888 78999999999999999997665
No 80
>cd03465 URO-D_like The URO-D _like protein superfamily includes bacterial and eukaryotic uroporphyrinogen decarboxylases (URO-D), coenzyme M methyltransferases and other putative bacterial methyltransferases. Uroporphyrinogen decarboxylase (URO-D) decarboxylates the four acetate side chains of uroporphyrinogen III (uro-III) to create coproporphyrinogen III, an important branching point of the tetrapyrrole biosynthetic pathway. The methyltransferases represented here are important for ability of methanogenic organisms to use other compounds than carbon dioxide for reduction to methane.
Probab=21.90 E-value=6e+02 Score=30.00 Aligned_cols=33 Identities=21% Similarity=0.170 Sum_probs=22.6
Q ss_pred eEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000604 255 TLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 290 (1398)
Q Consensus 255 t~i~f~gc~~~~g~TIlLRG~s~~~L~evkr~l~da 290 (1398)
..++.-|.++. .++++|.-+++.++++++++.+
T Consensus 265 ~~~i~G~id~~---~~l~~gt~eei~~~v~~~l~~~ 297 (330)
T cd03465 265 KACLMGNLDPI---DVLLNGSPEEIKEEVKELLEKL 297 (330)
T ss_pred ceEEEeCcChH---HhhcCCCHHHHHHHHHHHHHHH
Confidence 45555555432 4677888788888888888775
No 81
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=20.22 E-value=2.1e+02 Score=33.52 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=34.8
Q ss_pred HHHHHhcCCCEEEecCCCcHHHHHHHHHcCcEEEEccC---h----HHHHHHHHHhCC
Q 000604 163 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK---R----PLLERIARCTGA 213 (1398)
Q Consensus 163 V~rI~~~gpnVVlvek~Vs~~A~~~L~~~gI~vv~~Vk---~----~~LerIar~TGA 213 (1398)
+++|++++||+||+...-.....+.|.+.+-+++...+ - ..++.+++++|-
T Consensus 94 ~E~I~al~PDLIi~~~~~~~~~~~~L~~~~pv~~~~~~~~~~~~~~~~i~~lg~i~g~ 151 (303)
T PRK11411 94 LEAIAALKPDLIIADSSRHAGVYIALQKIAPTLLLKSRNETYQENLQSAAIIGEVLGK 151 (303)
T ss_pred HHHHHhCCCCEEEecccccHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899999999999765566666777777433333221 1 235678888885
Done!