Query 000604
Match_columns 1398
No_of_seqs 323 out of 1972
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 17:51:48 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000604.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_375-379//hhsearch_pdb/000604hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 565.9 21.1 250 1126-1389 75-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 558.1 14.0 248 1127-1390 68-392 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 455.6 30.5 297 3-314 84-406 (515)
4 3iyg_A T-complex protein 1 sub 1.0 1 1 437.2 30.1 297 3-315 85-414 (529)
5 3aq1_B Thermosome subunit; gro 1.0 1 1 436.3 25.7 297 3-314 48-369 (500)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 435.3 27.8 296 3-314 96-416 (543)
7 3iyg_Z T-complex protein 1 sub 1.0 1 1 434.0 27.8 292 3-314 85-410 (517)
8 1q3q_A Thermosome alpha subuni 1.0 1 1 432.9 29.4 296 3-314 98-418 (548)
9 3p9d_F T-complex protein 1 sub 1.0 1 1 432.3 16.5 294 3-314 92-422 (546)
10 3ko1_A Chaperonin; 9-fold symm 1.0 1 1 430.8 26.0 296 3-314 105-425 (553)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=565.89 Aligned_cols=250 Identities=28% Similarity=0.510 Sum_probs=226.5
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHH
Q ss_conf 2399998289999999987099958899973147667-569997411487631672674124999999999987999999
Q 000604 1126 VKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKW-SAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKY 1204 (1398)
Q Consensus 1126 ~~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~-~~~gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y 1204 (1398)
..|+|++|+|.+|++||++||+++.+|+.||++|..| .+++|||||+||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 75 ~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 154 (394)
T 2ybx_A 75 SHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQY 154 (394)
T ss_dssp SEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 87499997889999999982979999999854787642478998668799817972899961999999999999999999
Q ss_pred HHHCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEECCCCCCCCCCCCCC--CCCCCCCCH
Q ss_conf 98507999994044100067987640479805899999751246898-702676277854445567988--985323412
Q 000604 1205 LTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDTT--GTNKVLLDM 1281 (1398)
Q Consensus 1205 ~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~D~ 1281 (1398)
|.++ +++|||+||||+|+|+++ |+ +.|||||+|||+++ .|+++||||||+++|.+.+.+ +...||||+
T Consensus 155 ~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 225 (394)
T 2ybx_A 155 IVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDN 225 (394)
T ss_dssp HHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECHH
T ss_pred HHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---898676653178999989----90--79999993677887642010020564457766753445676541111
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECC-------------------------------
Q ss_conf 2521004985102957899999999840302235885457412665335-------------------------------
Q 000604 1282 NLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE------------------------------- 1330 (1398)
Q Consensus 1282 n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~------------------------------- 1330 (1398)
||++. ..+|+|+++.|+.|.+||++||.||+++||||||||||||..
T Consensus 226 df~~~--~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 303 (394)
T 2ybx_A 226 DFINE--GQKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTPP 303 (394)
T ss_dssp HHHHT--TCCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC---------------------
T ss_pred CHHHC--CCEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 36746--9819978999999999999999999877876640487773155432000024455554334456554457875
Q ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHH
Q ss_conf -----------------------------------440567644100134102467677653022489999997413936
Q 000604 1331 -----------------------------------RKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPK 1375 (1398)
Q Consensus 1331 -----------------------------------~~~~~~GIID~l~~yt~~KklE~~~K~~~~l~g~~~~~~T~v~P~ 1375 (1398)
+..||+|||||||+|||+||+|||+|+. ++|+ +..||||+|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~--~~~~-~~~iS~V~P~ 380 (394)
T 2ybx_A 304 DSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTV--KHGA-GAEISTVNPE 380 (394)
T ss_dssp -----------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC----------------------CCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHH--CCCC-CCCCCEECHH
T ss_conf 553444432222365545644432343455577774379999998631078408999999986--1589-9998569989
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 79999999997304
Q 000604 1376 QYKKRFRKAMTSYF 1389 (1398)
Q Consensus 1376 ~Y~~RF~~~m~~~f 1389 (1398)
+|++||++||.++|
T Consensus 381 ~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 381 QYSKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=558.06 Aligned_cols=248 Identities=30% Similarity=0.524 Sum_probs=224.4
Q ss_pred EEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEECCCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999828999999998709995889997314766756999741148763167267412499999999998799999998
Q 000604 1127 KFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLT 1206 (1398)
Q Consensus 1127 ~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~~~~gGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y~~ 1206 (1398)
+|.|++|+|.+|++||++||+++.+|+.||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+||.
T Consensus 68 ~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~~~ 145 (392)
T 2gk9_A 68 HFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIV 145 (392)
T ss_dssp SBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 6499997979999999980989899998743787455-798762-37986998689996099999999999999999998
Q ss_pred HCCCCCCCCHHHHEEEEEEEEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCHHH
Q ss_conf 507999994044100067987640479805899999751246898-7026762778544455679889--8532341225
Q 000604 1207 DSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDTTG--TNKVLLDMNL 1283 (1398)
Q Consensus 1207 ~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~--~~~vl~D~n~ 1283 (1398)
++ +++|||+||||+|+|+++ |++ .|||||+|||+++ .|+++||||||+++|++.+.+. ...||||+||
T Consensus 146 ~~---~~~TLL~k~~Gly~v~~~----~~~--~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~df 216 (392)
T 2gk9_A 146 KC---HGNTLLPQFLGMYRVSVD----NED--SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDF 216 (392)
T ss_dssp HT---TSCSSSCCEEEEEECCBS----SCC--CEEEEEECSSCSSSCCSCCCEECC-----------------CCBTTC-
T ss_pred HH---CCCCCHHHHCEEEEEEEC----CEE--EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCH
T ss_conf 40---798655653068999989----907--999999367788764103445056545776675223566661113115
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCEEEEECCC--------------------------------
Q ss_conf 210049851029578999999998403022358854574126653354--------------------------------
Q 000604 1284 LENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEER-------------------------------- 1331 (1398)
Q Consensus 1284 ~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~-------------------------------- 1331 (1398)
++.. .+|+|+++.|+.|.+||++||.||+++||||||||||||...
T Consensus 217 ~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (392)
T 2gk9_A 217 LNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVG 294 (392)
T ss_dssp -CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC---------------------------------
T ss_pred HHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6259--86987899999999999999999987687663058766315543211222234455554555332345643224
Q ss_pred ------------------------------------------CEEEEEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCC
Q ss_conf ------------------------------------------40567644100134102467677653022489999997
Q 000604 1332 ------------------------------------------KELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASP 1369 (1398)
Q Consensus 1332 ------------------------------------------~~~~~GIID~l~~yt~~KklE~~~K~~~~l~g~~~~~~ 1369 (1398)
..||+|||||||+|||+||+|||+|++ ++|+ +..|
T Consensus 295 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~--~~~~-~~~i 371 (392)
T 2gk9_A 295 SYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTV--KHGA-GAEI 371 (392)
T ss_dssp ------------------------------------------CBCCCEECCCC---------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHH--CCCC-CCCC
T ss_conf 567885453333432222366656544432343455567775279999977400087008999999986--1578-9997
Q ss_pred CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 413936799999999973045
Q 000604 1370 TIISPKQYKKRFRKAMTSYFL 1390 (1398)
Q Consensus 1370 T~v~P~~Y~~RF~~~m~~~f~ 1390 (1398)
|||+|++|++||++||.++|.
T Consensus 372 S~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 372 STVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp ---CHHHHHHHHHHHTC----
T ss_pred CEECHHHHHHHHHHHHHHHHC
T ss_conf 468989999999999999609
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=455.61 Aligned_cols=297 Identities=24% Similarity=0.401 Sum_probs=274.5
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH------------------HHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 753254340468887743089996999999999999999------------------99847766656891027989999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSEL------------------LRAEGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qL------------------l~~~~i~~~~k~~~~~w~~~l~~ 64 (1398)
|+++||||||++++..++++|+||..|+.||.+|+...+ .+.+.+++++|. ...|.+.+++
T Consensus 84 TtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~-i~~~~~~~~~ 162 (515)
T 3iyg_G 84 TSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKV-ISRWSSLACN 162 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHH
T ss_conf 249999999999999999879988999999999999999999985045688889999999998714875-2557999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCC---
Q ss_conf 99999862277788999889568537998238997863248768992125788984100497199982001333565---
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~--- 141 (1398)
++++|+..|.++......+|+.+||+|+|++||++.||++++|++|+|.+.|++||++++||||++++|||||++.+
T Consensus 163 i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 242 (515)
T 3iyg_G 163 IALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT 242 (515)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 99999984233568885456423058998369980101688417982787898886144410799981555444234674
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECC
Q ss_conf ----6866799999999999999999998805997998557976999999997594899706957899999996994714
Q 000604 142 ----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 217 (1398)
+...++.++++ +|++|++++|++|++.||+||+++++|+++|++||.++||++++++++.+|+|||++|||.+++
T Consensus 243 ~v~is~~~~l~~~l~-~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~ii~ 321 (515)
T 3iyg_G 243 DIEITREEDFTRILQ-MEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVS 321 (515)
T ss_pred EEEECCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCEEEC
T ss_conf 289678999999999-9999999999999947998999788667899999987895666667889999999995992642
Q ss_pred CCCCCCCCCCCE-EEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 565689897410-0149999931632223335789971599998389986028996269998999999999999999998
Q 000604 218 SIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 296 (1398)
Q Consensus 218 sid~l~~~~LG~-C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~dal~v~~~ 296 (1398)
+++++++..||+ |+.|++.++++ ++++||+||+.+.+|||+|||+++.+|+|+||+++||++++++
T Consensus 322 ~l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~ 388 (515)
T 3iyg_G 322 RPEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRN 388 (515)
T ss_pred CCCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 102367666287562899999878-------------1699995788887689998489889999999999999999999
Q ss_pred HHCCCEEEECCCCCCCCC
Q ss_conf 230492650798445444
Q 000604 297 LSLETSFLADEGATLPKM 314 (1398)
Q Consensus 297 ~~le~~~l~ggGa~~~~~ 314 (1398)
++++..+|+||||+|.+.
T Consensus 389 ~~~~~~ivpGGGa~e~~~ 406 (515)
T 3iyg_G 389 VLLDPQLVPGGGASEMAV 406 (515)
T ss_pred HHHCCCEEECCCHHHHHH
T ss_conf 962896893788999999
No 4
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=437.20 Aligned_cols=297 Identities=18% Similarity=0.184 Sum_probs=269.1
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC-------------------CCCCCCCCHHHHHHHHH
Q ss_conf 75325434046888774308999699999999999999999847-------------------76665689102798999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG-------------------IKLGKEDSEEDWLGIIT 63 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~-------------------i~~~~k~~~~~w~~~l~ 63 (1398)
|+++||||||++++..++++|+||..|+.||.+|+...+..+.+ +++++|. ...|.+.|+
T Consensus 85 TtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~-~~~~~~~i~ 163 (529)
T 3iyg_A 85 TSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKV-IGINGDFFA 163 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHH
T ss_conf 0299999999999999998799999999999999999999998742607888998999999999856675-532078999
Q ss_pred HHHHHHHHHCCCCCCCC-CCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCCC
Q ss_conf 99999986227778899-98895685379982389978632487689921257889841004971999820013335656
Q 000604 64 TIAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN 142 (1398)
Q Consensus 64 ~l~~~Av~~v~~~~~~~-~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~~ 142 (1398)
+|+++|+..|.+...++ ..+|+ ++|+|+|++||++.||++++|++|+|.+.|+.||++++||||++++|||+|++.+.
T Consensus 164 ~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~ 242 (529)
T 3iyg_A 164 NLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242 (529)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999999975124478766654-41799995598855438996168745864356875168866999627765453567
Q ss_pred -------CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEE
Q ss_conf -------8667999999999999999999988059979985579769999999975948997069578999999969947
Q 000604 143 -------QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 215 (1398)
Q Consensus 143 -------~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~I 215 (1398)
...+++.+.+ +|+++++.++++|++.|+|||+++++|++.|++||.++||++++++++.+|+|||++|||.+
T Consensus 243 ~~~v~i~~~~~~~~i~~-~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~i 321 (529)
T 3iyg_A 243 GVQVVITDPEKLDQIRQ-RESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATV 321 (529)
T ss_pred CCEEEECCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCEE
T ss_conf 85499689999999999-99999999999999549989998788778999999986980363479888999999859956
Q ss_pred CCCCCCCC------CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 14565689------897410014999993163222333578997159999838998602899626999899999999999
Q 000604 216 TPSIDNIS------TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 289 (1398)
Q Consensus 216 i~sid~l~------~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~d 289 (1398)
+++++.+. +.+||+|+.|+++++++ ++|+||+||+.+.+|||+|||+++.+|+|+||+++|
T Consensus 322 v~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~D 388 (529)
T 3iyg_A 322 LSTLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKARTSASVILRGANDFMCDEMERSLHD 388 (529)
T ss_pred ECCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHH
T ss_conf 6140104531005763376543899998679-------------539999757998658999778627799999999999
Q ss_pred HHHHHHHHHCCCEEEECCCCCCCCCC
Q ss_conf 99999982304926507984454444
Q 000604 290 AVFAAYHLSLETSFLADEGATLPKMR 315 (1398)
Q Consensus 290 al~v~~~~~le~~~l~ggGa~~~~~~ 315 (1398)
|+++++++++++++|+||||+|.+..
T Consensus 389 al~v~r~~v~~~~iVpGGGa~E~~ls 414 (529)
T 3iyg_A 389 ALCVVKRVLESKSVVPGGGAVEAALS 414 (529)
T ss_pred HHHHHHHHHHCCEEEECCCHHHHHHH
T ss_conf 99999999638908847867999999
No 5
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=436.26 Aligned_cols=297 Identities=20% Similarity=0.320 Sum_probs=273.9
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------------------HHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 75325434046888774308999699999999999999------------------999847766656891027989999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSE------------------LLRAEGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~q------------------Ll~~~~i~~~~k~~~~~w~~~l~~ 64 (1398)
|++++|||||++++..++++|+||..|+.||.+|+... |.+.+.+++++|+. ..|.+.|++
T Consensus 48 TtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~-~~~~~~i~~ 126 (500)
T 3aq1_B 48 TTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGA-EAYKEKLSA 126 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSST-TSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHH
T ss_conf 7899999999999999998799989999999999999999999826888887678999999998623113-555789999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCCC--
Q ss_conf 999998622777889998895685379982389978632487689921257889841004971999820013335656--
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN-- 142 (1398)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~~-- 142 (1398)
|+++|+..|.++......+|+.++|+|+|++||++.||++++|++|+|.+.|+.||++++||||++++|+|||++.+.
T Consensus 127 li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~ 206 (500)
T 3aq1_B 127 LTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDS 206 (500)
T ss_dssp HHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
T ss_conf 99999999613346874445112279998358980011788226994057889985443598799993776666544632
Q ss_pred -----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECC
Q ss_conf -----866799999999999999999998805997998557976999999997594899706957899999996994714
Q 000604 143 -----QLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 143 -----~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 217 (1398)
...+++.+++ +|++|+..++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.+++
T Consensus 207 ~v~i~~~~~l~~~~~-~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis 285 (500)
T 3aq1_B 207 EIKITSPGQMQLFLD-QEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQ 285 (500)
T ss_dssp -------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBS
T ss_pred EEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCEEEC
T ss_conf 476489999999999-9999999999999974939999877767799999987898999727999999999984995745
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56568989741001499999316322233357899715999983899860289962699989999999999999999982
Q 000604 218 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 218 sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++.+..||+|+.|++.++++ +++++|+||+.+.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 286 ~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~ 352 (500)
T 3aq1_B 286 DLDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVV 352 (500)
T ss_dssp CTTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 60118986788760899998457-------------68999977888756999935896779999999999899999999
Q ss_pred HCCCEEEECCCCCCCCC
Q ss_conf 30492650798445444
Q 000604 298 SLETSFLADEGATLPKM 314 (1398)
Q Consensus 298 ~le~~~l~ggGa~~~~~ 314 (1398)
++++++|+||||+|...
T Consensus 353 ~~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 353 IEDGKVVVGGGSSEVEL 369 (500)
T ss_dssp HHHSEEEETTTHHHHHH
T ss_pred HHCCCCCCCCCHHHHHH
T ss_conf 97888788872999999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=435.32 Aligned_cols=296 Identities=20% Similarity=0.303 Sum_probs=272.9
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH------------------HHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 7532543404688877430899969999999999999999------------------9847766656891027989999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELL------------------RAEGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl------------------~~~~i~~~~k~~~~~w~~~l~~ 64 (1398)
|+++||||||++++..++++|+||..|+.||.+|+...+. +.+.+++++|+ ...|.+.|++
T Consensus 96 TtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi-~~~~~~~i~~ 174 (543)
T 1a6d_B 96 TTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKS-ASVAKDKLAE 174 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSG-GGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHHH
T ss_conf 589999999999999999779998999999999999999999982688899877999999999852542-4454779999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCC---
Q ss_conf 99999862277788999889568537998238997863248768992125788984100497199982001333565---
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~--- 141 (1398)
|+++|+..|.++....+.+|+ ++|+|+|++||++.||++++|++|+|.+.|+.||++++||||++++|+|||++.+
T Consensus 175 livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 253 (543)
T 1a6d_B 175 ISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253 (543)
T ss_dssp HHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEE
T ss_pred HHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCCCCCEECCCEEEEEECCCCCCCCCCCC
T ss_conf 999999984533368744334-4489998368981222687348983177888875331387699992455644345774
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECC
Q ss_conf ----6866799999999999999999998805997998557976999999997594899706957899999996994714
Q 000604 142 ----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 217 (1398)
+...+++.+++ +|++|+..++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.+++
T Consensus 254 ~v~i~~~~~l~~~~~-~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~iis 332 (543)
T 1a6d_B 254 NLRIEDPSMIQKFLA-QEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVS 332 (543)
T ss_dssp EECCCSTTHHHHHHH-HHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEES
T ss_pred EEEECCHHHHHHHHH-HHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEEC
T ss_conf 389688999999999-9999999999999972998999888868899999987896686468999999999982992655
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56568989741001499999316322233357899715999983899860289962699989999999999999999982
Q 000604 218 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 218 sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++.+..||+|+.|++.++++ +++++|+||+.+.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 333 ~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a 399 (543)
T 1a6d_B 333 TIDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASA 399 (543)
T ss_dssp CGGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 51449987788763899999668-------------14999966888755999965797779999999999999999999
Q ss_pred HCCCEEEECCCCCCCCC
Q ss_conf 30492650798445444
Q 000604 298 SLETSFLADEGATLPKM 314 (1398)
Q Consensus 298 ~le~~~l~ggGa~~~~~ 314 (1398)
++++++|+||||+|...
T Consensus 400 ~~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 400 LEDGAYAAGGGATAAEI 416 (543)
T ss_dssp HHHCEEEETTTHHHHHH
T ss_pred HHCCCCCCCCCHHHHHH
T ss_conf 97888167864999999
No 7
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=433.96 Aligned_cols=292 Identities=17% Similarity=0.273 Sum_probs=270.2
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH-----------------HHHHHCCCCCCCCCHHHHHHHHHHH
Q ss_conf 75325434046888774308999699999999999999-----------------9998477666568910279899999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSE-----------------LLRAEGIKLGKEDSEEDWLGIITTI 65 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~q-----------------Ll~~~~i~~~~k~~~~~w~~~l~~l 65 (1398)
|++++|||||++++..++++|+||..|+.||.+|+... |.+.+.+++++|+. ..|.++|+++
T Consensus 85 TtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~-~~~~d~la~l 163 (517)
T 3iyg_Z 85 TSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVH-AELADVLTEA 163 (517)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHH
T ss_conf 248999999999999998657799999999999999999999851767789889999999987045542-0478899999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCCC---
Q ss_conf 99998622777889998895685379982389978632487689921257889841004971999820013335656---
Q 000604 66 AWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN--- 142 (1398)
Q Consensus 66 ~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~~--- 142 (1398)
+++|+..|.+. +..+|+ ++|+|+|++||+..||++++|++|+|.+.|+.||++++||+|++++++|||+|.+.
T Consensus 164 ~vdaV~~V~~~---~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 164 VVDSILAIKKQ---DEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHHEECCC---CCCCCH-HHHEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 99886033147---876773-57136651488732000575479832577877643223874999536655554445416
Q ss_pred ----CHHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------EEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHH
Q ss_conf ----866799999999999999999998805997---------9985579769999999975948997069578999999
Q 000604 143 ----QLASFNTLLQQQENDHLKMVISKIEALRPN---------VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIAR 209 (1398)
Q Consensus 143 ----~~~sl~~ii~~qE~e~L~~~v~rI~~~~pn---------vVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar 209 (1398)
...+++.+++ +|++|+++.+++|+.++++ ||+++++|+++|++||.++||++++++++.+|+|||+
T Consensus 240 ~~i~~~~~l~~~~~-~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~ 318 (517)
T 3iyg_Z 240 FFYKSAEEREKLVK-AERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTL 318 (517)
T ss_pred EEECCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHH
T ss_conf 99689999999999-99999999999999850555412578638973566787999999987987998257999999999
Q ss_pred HHCCEECCCCCCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHH
Q ss_conf 96994714565689897-41001499999316322233357899715999983899860289962699989999999999
Q 000604 210 CTGALITPSIDNISTTR-LGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQ 288 (1398)
Q Consensus 210 ~TgA~Ii~sid~l~~~~-LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~ 288 (1398)
+|||.++++++++++.. ||+|+ |+++++++ ++++||+||+.+.+|||+|||+++.+|+|+||+++
T Consensus 319 ~tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~ 384 (517)
T 3iyg_Z 319 ACGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIR 384 (517)
T ss_pred HHCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECCCCCHHHEEEECCCCHHHHHHHHHHHH
T ss_conf 86997854534275000477514-99999768-------------25899947898334434314886789999999999
Q ss_pred HHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 99999998230492650798445444
Q 000604 289 YAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 289 dal~v~~~~~le~~~l~ggGa~~~~~ 314 (1398)
||+++++++++++++|+||||+|.+.
T Consensus 385 DAl~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 385 DGLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred HHHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 88999999973661854862899999
No 8
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=432.95 Aligned_cols=296 Identities=22% Similarity=0.342 Sum_probs=274.1
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH------------------HHHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 75325434046888774308999699999999999999------------------999847766656891027989999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSE------------------LLRAEGIKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~q------------------Ll~~~~i~~~~k~~~~~w~~~l~~ 64 (1398)
|+++||||||++++..++++|+||..|+.||.+|+... |.+.+.+++++|+. ..|.+.|++
T Consensus 98 TtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~-~~~~~~i~~ 176 (548)
T 1q3q_A 98 TTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA-ESHKELLAK 176 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTT-GGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHH
T ss_conf 3899999999999999998799889999999999999999999845888887789999999987503002-455579999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCC---
Q ss_conf 99999862277788999889568537998238997863248768992125788984100497199982001333565---
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~--- 141 (1398)
|+++|+..|.++......+|+ ++|+|+|++||++.||++++|++|+|.+.|+.||++++||||++++|+|||++.+
T Consensus 177 livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 255 (548)
T 1q3q_A 177 LAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255 (548)
T ss_dssp HHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCEECCCEEEEEECCCCCCCCCCCC
T ss_conf 999999984434578754557-7389999448983023897108984157789985651488799992676754346784
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECC
Q ss_conf ----6866799999999999999999998805997998557976999999997594899706957899999996994714
Q 000604 142 ----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 217 (1398)
+...+++.+++ +|++|+..++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.+++
T Consensus 256 ~v~i~~~~~l~~~~~-~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~ 334 (548)
T 1q3q_A 256 KINITSPDQLMSFLE-QEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVT 334 (548)
T ss_dssp CEEECSHHHHHHHHH-HHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBS
T ss_pred EEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCEEEC
T ss_conf 399688999999999-9999999999999985969999867858899999998795787337999999999985994755
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56568989741001499999316322233357899715999983899860289962699989999999999999999982
Q 000604 218 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 218 sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++.+..||+|+.|++.++++ ++|++|+||+.+.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 335 ~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a 401 (548)
T 1q3q_A 335 NVKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDV 401 (548)
T ss_dssp SGGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 52549987788763899999668-------------33999965899976999977897678999999999799999999
Q ss_pred HCCCEEEECCCCCCCCC
Q ss_conf 30492650798445444
Q 000604 298 SLETSFLADEGATLPKM 314 (1398)
Q Consensus 298 ~le~~~l~ggGa~~~~~ 314 (1398)
++++++|+||||+|...
T Consensus 402 ~~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 402 MEDGAVLPAGGAPEIEL 418 (548)
T ss_dssp HHSCEEEECTTHHHHHH
T ss_pred HHCCCCCCCCCHHHHHH
T ss_conf 97788056875999999
No 9
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=432.32 Aligned_cols=294 Identities=21% Similarity=0.291 Sum_probs=268.6
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH--------------------CCCCCCCCCHHHHHHHH
Q ss_conf 7532543404688877430899969999999999999999984--------------------77666568910279899
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE--------------------GIKLGKEDSEEDWLGII 62 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~--------------------~i~~~~k~~~~~w~~~l 62 (1398)
|+++||||||++++..++++|+||..|+.||.+|+...+..+. .+++++|+ ...|.+.|
T Consensus 92 TtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi-~~~~~d~l 170 (546)
T 3p9d_F 92 TTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKV-DADLTEVL 170 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTT-HHHHCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHH
T ss_conf 10999999999999999867998689999999999999999997005555665688999999999817876-44599999
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCC-
Q ss_conf 9999999862277788999889568537998238997863248768992125788984100497199982001333565-
Q 000604 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1398)
Q Consensus 63 ~~l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~- 141 (1398)
++++++|+..|.+. .+..+|+ ++|+|+|++||+..||++++|++|+|.+.|+.||++++||||++++|||||++.+
T Consensus 171 a~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~ 247 (546)
T 3p9d_F 171 TPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247 (546)
T ss_dssp HHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSS
T ss_pred HHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEECCCEEEEECCCCCCCCCCC
T ss_conf 99998862574037--8986662-02699995588712127986699824666556752630766999627666554556
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHH
Q ss_conf ------68667999999999999999999988059----------97998557976999999997594899706957899
Q 000604 142 ------NQLASFNTLLQQQENDHLKMVISKIEALR----------PNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLE 205 (1398)
Q Consensus 142 ------~~~~sl~~ii~~qE~e~L~~~v~rI~~~~----------pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~Le 205 (1398)
+...+++.+++ +|++++++++++|+.++ |+||+++++|++.|++||.++||++++++++.+|+
T Consensus 248 ~~~~~i~~~~~~~~~~~-~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~le 326 (546)
T 3p9d_F 248 NSGFFYSSADQRDKLAA-SERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNME 326 (546)
T ss_dssp CBCCCCCSSSCHHHHHH-HHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCCHHHHH
T ss_pred CCEEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHH
T ss_conf 74499768999999999-99999999999999999987420158864998467676899999998898468137988899
Q ss_pred HHHHHHCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
Q ss_conf 99999699471456568989741001499999316322233357899715999983899860289962699989999999
Q 000604 206 RIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKH 285 (1398)
Q Consensus 206 rIar~TgA~Ii~sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr 285 (1398)
|||++|||.++++++++++..||+|+.|+++++++ ++++||+||+.+.+|||+|||+++.+|+|+||
T Consensus 327 ria~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr 393 (546)
T 3p9d_F 327 RLQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENTDPKSCTILIKGSTHYALAQTKD 393 (546)
T ss_dssp HHHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCSCCSCEEEECCCSCHHHHHHHHH
T ss_pred HHHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHH
T ss_conf 99998598794562008986788562799998469-------------46999956899755899977987789999999
Q ss_pred HHHHHHHHHHHHHCCCEEEECCCCCCCCC
Q ss_conf 99999999998230492650798445444
Q 000604 286 VVQYAVFAAYHLSLETSFLADEGATLPKM 314 (1398)
Q Consensus 286 ~l~dal~v~~~~~le~~~l~ggGa~~~~~ 314 (1398)
+++||+++++++++|+++|+||||+|.+.
T Consensus 394 ~l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 394 AVRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp HHHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 99999999999833995995887999999
No 10
>3ko1_A Chaperonin; 9-fold symmetry, double ring, ATP hydrolase, chaperone, NUCL binding; HET: ADP; 3.70A {Acidianus tengchongensis}
Probab=1.00 E-value=1 Score=430.80 Aligned_cols=296 Identities=22% Similarity=0.293 Sum_probs=271.6
Q ss_pred CCCEEEECHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCCCHHHHHHHHHH
Q ss_conf 75325434046888774308999699999999999999999847------------------766656891027989999
Q 000604 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1398)
Q Consensus 3 ~~~~vlagell~~a~~l~~~~~~~~~i~~~~~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1398)
|+++||||||++++..++++|+||..|+.||.+|+...+..+.. +++++|.. ..|.+.|++
T Consensus 105 TtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~e~L~~vA~tsl~sK~~-~~~~~~i~~ 183 (553)
T 3ko1_A 105 KTAVIFSGELVKKAEDLLYKDVHPTIIISGYKKAEEVALQTIQELAQTVSINDTDLLRKIAMTSLSSKAV-AGAREYIAD 183 (553)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHTTCEECCTTCHHHHHHHHHHHHTTSSC-CTTHHHHHH
T ss_pred EEEEEEHHHHHHHHHHHHHCCCCCEEEEHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHH-HHHHHHHHH
T ss_conf 3699962778876999974689961775121689999999999846887778499999999877568765-018999999
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEECCCCCCCC---
Q ss_conf 99999862277788999889568537998238997863248768992125788984100497199982001333565---
Q 000604 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1398)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlLl~~~Le~~r~~--- 141 (1398)
|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|.+.|..||++++||||++++|+|+|++.+
T Consensus 184 livdAv~~V~~~~~G~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~d~~Le~~k~e~~~ 262 (553)
T 3ko1_A 184 IVVKAVTQVAELRGDKWYVDL-DNIQIVKKAGGSINDTQLVYGIVVDKEVVHPGMPKRLENAKIALIDASLEVEKPELDA 262 (553)
T ss_dssp HHHHHHHHHCCCTTSSCCCCG-GGEEEEECCCSCGGGCEEESEEEECSCBSCTTSCSCCBSCEEEEECSCBSCCCCTTTC
T ss_pred HHHHHHHHHHHHCCCCEEEEC-HHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCC
T ss_conf 999999999996287169841-2678898738751113145777730001379986320024588863753346766672
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECC
Q ss_conf ----6866799999999999999999998805997998557976999999997594899706957899999996994714
Q 000604 142 ----NQLASFNTLLQQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 217 (1398)
Q Consensus 142 ----~~~~sl~~ii~~qE~e~L~~~v~rI~~~~pnvVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 217 (1398)
+...+++++++ +|+++++.++++|++.|+|||+++++|++.|++||.++||+++++|++.+|+|||++|||.+++
T Consensus 263 ~v~Iss~~~l~~~~~-~E~~~l~~~vekI~~~g~~vvI~~~~I~~~al~~L~~~gI~~v~~v~k~~leria~~tGa~ivs 341 (553)
T 3ko1_A 263 EIRINDPTQMQKFLD-EEENLIKEKVDKILATGANVIICQKGIDEVAQSYLAKKGVLAVRRAKKSDLEKLARATGGRVVS 341 (553)
T ss_dssp CCCCCSHHHHHHHHH-HHHHHHHHHHHHHHTTCCSEEECSSCBCSHHHHHHHHHTCEEECCCCHHHHHHHHTTTTCCEES
T ss_pred EEEECCHHHHHHHHH-HHHHHHHHHHHHHHHHCCEEEEECCCHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHCCEEEC
T ss_conf 687089899999999-8999999999999862564899615748999998875441532245152489987751783422
Q ss_pred CCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 56568989741001499999316322233357899715999983899860289962699989999999999999999982
Q 000604 218 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 297 (1398)
Q Consensus 218 sid~l~~~~LG~C~~f~v~~~~~e~~~~~~~~~~~~kt~i~f~gc~~~~gcTIiLRG~s~~~L~evkr~l~dal~v~~~~ 297 (1398)
+++++++..||+|+.|+++++++ ++++||+||+.+.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 342 ~l~~l~~~~LG~a~~v~~~~ig~-------------d~~~~i~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a 408 (553)
T 3ko1_A 342 NIDEISEQDLGYASLIEERKVGE-------------DKMVFVEGAKNPKSISILIRGGLERLVDETERALRDALGTVADV 408 (553)
T ss_dssp CGGGCCSSSSEECSEEECCCCSS-------------SCCEEEESCSSSSCEEEEECCSSTTHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHCCHHHHHHHHHCCC-------------CEEEEECCCCCCCEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 41008933333677777752386-------------50798606899754898550458888888999999999989988
Q ss_pred HCCCEEEECCCCCCCCC
Q ss_conf 30492650798445444
Q 000604 298 SLETSFLADEGATLPKM 314 (1398)
Q Consensus 298 ~le~~~l~ggGa~~~~~ 314 (1398)
++++++|+||||+|...
T Consensus 409 v~~g~iVpGGGa~e~~~ 425 (553)
T 3ko1_A 409 IKDGRAIAGGGAVEIEI 425 (553)
T ss_dssp HHHCEEEETTTHHHHHH
T ss_pred HHCCCEECCCCEEEEHH
T ss_conf 62574401786367479
Done!