Query 000605
Match_columns 1397
No_of_seqs 330 out of 1978
Neff 6.5
Searched_HMMs 46136
Date Mon Apr 1 20:41:35 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000605.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000605hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0230 Phosphatidylinositol-4 100.0 9E-218 2E-222 2003.4 75.8 1262 11-1397 286-1595(1598)
2 COG5253 MSS4 Phosphatidylinosi 100.0 2.5E-71 5.5E-76 630.6 18.7 357 1014-1396 241-604 (612)
3 cd00139 PIPKc Phosphatidylinos 100.0 1.2E-67 2.7E-72 605.2 27.7 255 1124-1389 54-313 (313)
4 smart00330 PIPKc Phosphatidyli 100.0 1.1E-66 2.5E-71 604.6 26.7 264 1107-1388 16-342 (342)
5 KOG0229 Phosphatidylinositol-4 100.0 2.1E-58 4.5E-63 526.9 22.3 250 1126-1389 97-420 (420)
6 PF01504 PIP5K: Phosphatidylin 100.0 1.6E-56 3.4E-61 503.7 17.3 222 1154-1388 2-252 (252)
7 PLN03185 phosphatidylinositol 100.0 3.6E-55 7.7E-60 542.8 27.8 264 1108-1389 382-765 (765)
8 cd03334 Fab1_TCP TCP-1 like do 100.0 2.5E-48 5.4E-53 440.1 29.5 259 36-307 2-261 (261)
9 TIGR02344 chap_CCT_gamma T-com 100.0 2.4E-47 5.2E-52 473.3 28.8 297 3-313 91-414 (525)
10 TIGR02339 thermosome_arch ther 100.0 6.1E-45 1.3E-49 451.3 30.4 297 3-313 91-413 (519)
11 KOG0364 Chaperonin complex com 100.0 1.1E-45 2.4E-50 416.1 16.4 296 2-313 93-414 (527)
12 cd03339 TCP1_epsilon TCP-1 (CT 100.0 2.8E-44 6.1E-49 445.7 30.0 296 3-313 98-420 (526)
13 cd03343 cpn60 cpn60 chaperonin 100.0 8.1E-44 1.8E-48 441.6 29.3 296 3-313 90-410 (517)
14 PTZ00212 T-complex protein 1 s 100.0 2.6E-43 5.7E-48 437.1 30.0 289 3-313 102-419 (533)
15 cd03335 TCP1_alpha TCP-1 (CTT 100.0 5.4E-43 1.2E-47 434.4 29.9 296 3-313 83-411 (527)
16 TIGR02343 chap_CCT_epsi T-comp 100.0 6.4E-43 1.4E-47 433.2 30.3 296 3-313 102-424 (532)
17 cd03336 TCP1_beta TCP-1 (CTT o 100.0 1.5E-42 3.3E-47 429.2 30.9 289 3-313 90-407 (517)
18 cd03340 TCP1_eta TCP-1 (CTT or 100.0 1.7E-42 3.7E-47 429.7 30.3 290 3-313 91-412 (522)
19 TIGR02342 chap_CCT_delta T-com 100.0 3.5E-42 7.6E-47 425.9 30.3 295 3-313 84-410 (517)
20 TIGR02347 chap_CCT_zeta T-comp 100.0 4.1E-42 8.9E-47 425.2 29.9 293 3-313 91-419 (531)
21 cd03338 TCP1_delta TCP-1 (CTT 100.0 1.5E-41 3.4E-46 420.8 30.5 295 3-313 83-409 (515)
22 TIGR02340 chap_CCT_alpha T-com 100.0 2.7E-41 5.8E-46 419.7 30.7 296 3-313 87-415 (536)
23 cd03337 TCP1_gamma TCP-1 (CTT 100.0 1E-41 2.2E-46 418.2 25.5 263 3-313 91-373 (480)
24 KOG0361 Chaperonin complex com 100.0 4.7E-42 1E-46 380.4 20.1 291 2-313 94-416 (543)
25 TIGR02345 chap_CCT_eta T-compl 100.0 3.1E-41 6.7E-46 417.9 29.2 291 3-313 92-413 (522)
26 TIGR02341 chap_CCT_beta T-comp 100.0 1.7E-40 3.7E-45 410.5 30.0 289 3-313 91-408 (519)
27 KOG0358 Chaperonin complex com 100.0 1.4E-39 2.9E-44 360.4 19.3 297 2-313 100-427 (534)
28 TIGR02346 chap_CCT_theta T-com 100.0 1.7E-38 3.6E-43 393.8 29.5 291 3-313 93-411 (531)
29 KOG0363 Chaperonin complex com 100.0 2.5E-39 5.3E-44 356.7 18.8 288 3-312 95-411 (527)
30 cd03342 TCP1_zeta TCP-1 (CTT o 100.0 1.1E-38 2.3E-43 391.7 23.8 271 3-313 87-376 (484)
31 KOG0360 Chaperonin complex com 100.0 6.6E-39 1.4E-43 364.8 18.1 295 3-312 94-420 (545)
32 cd00309 chaperonin_type_I_II c 100.0 1.2E-37 2.5E-42 382.1 26.4 259 3-313 83-359 (464)
33 KOG0359 Chaperonin complex com 100.0 2.7E-38 5.9E-43 356.1 16.1 294 2-313 91-410 (520)
34 PF00118 Cpn60_TCP1: TCP-1/cpn 100.0 3.9E-37 8.4E-42 379.9 26.1 289 3-312 64-377 (485)
35 cd03341 TCP1_theta TCP-1 (CTT 100.0 8.6E-37 1.9E-41 374.1 25.5 262 3-313 83-363 (472)
36 cd03333 chaperonin_like chaper 100.0 6.7E-36 1.5E-40 329.2 23.6 207 40-299 3-209 (209)
37 COG0459 GroL Chaperonin GroEL 100.0 2.4E-35 5.2E-40 360.4 24.6 290 3-313 86-407 (524)
38 KOG0362 Chaperonin complex com 100.0 3.5E-31 7.7E-36 304.2 24.6 291 4-314 102-415 (537)
39 PRK12849 groEL chaperonin GroE 100.0 4.4E-31 9.5E-36 326.9 25.0 265 3-313 89-421 (542)
40 PRK00013 groEL chaperonin GroE 100.0 8.8E-31 1.9E-35 324.2 25.0 266 3-313 89-421 (542)
41 PRK12851 groEL chaperonin GroE 100.0 1.6E-30 3.6E-35 322.1 25.0 266 3-313 90-422 (541)
42 cd03344 GroEL GroEL_like type 100.0 2.5E-30 5.5E-35 319.3 26.1 265 3-313 87-419 (520)
43 PTZ00114 Heat shock protein 60 100.0 2.4E-30 5.2E-35 321.8 25.5 265 3-313 101-434 (555)
44 TIGR02348 GroEL chaperonin Gro 100.0 3.1E-30 6.8E-35 319.1 24.4 265 3-313 88-420 (524)
45 PRK12850 groEL chaperonin GroE 100.0 2.5E-29 5.3E-34 311.8 25.2 266 3-313 90-422 (544)
46 PRK12852 groEL chaperonin GroE 100.0 9.8E-29 2.1E-33 307.2 24.0 265 3-313 90-422 (545)
47 CHL00093 groEL chaperonin GroE 100.0 3.2E-28 6.9E-33 301.6 21.9 267 3-313 89-421 (529)
48 PRK14104 chaperonin GroEL; Pro 100.0 2.5E-27 5.5E-32 293.8 24.0 265 3-313 90-422 (546)
49 PLN03167 Chaperonin-60 beta su 100.0 7.6E-28 1.6E-32 300.0 18.6 276 3-313 145-476 (600)
50 KOG0357 Chaperonin complex com 99.9 2.6E-24 5.7E-29 237.5 12.4 194 3-312 94-287 (400)
51 KOG0356 Mitochondrial chaperon 96.7 0.012 2.6E-07 71.5 12.3 278 3-311 103-434 (550)
52 KOG0230 Phosphatidylinositol-4 96.0 0.0052 1.1E-07 81.6 4.4 98 524-635 660-757 (1598)
53 PF02579 Nitro_FeMo-Co: Dinitr 56.8 32 0.00069 32.7 6.6 47 161-208 45-91 (94)
54 cd01143 YvrC Periplasmic bindi 53.9 32 0.00069 37.1 6.8 51 162-212 53-110 (195)
55 cd00851 MTH1175 This uncharact 52.8 32 0.00069 33.3 6.0 39 160-199 54-92 (103)
56 PF07450 HycH: Formate hydroge 49.0 11 0.00024 38.6 2.1 22 1315-1343 24-45 (131)
57 cd01144 BtuF Cobalamin binding 47.8 42 0.00091 37.8 6.8 52 162-213 50-108 (245)
58 PRK09534 btuF corrinoid ABC tr 47.7 38 0.00082 41.1 6.8 52 161-212 111-169 (359)
59 TIGR03659 IsdE heme ABC transp 46.0 37 0.00081 39.6 6.2 52 162-213 84-141 (289)
60 PRK15084 formate hydrogenlyase 45.8 12 0.00027 38.4 1.8 22 1315-1343 26-47 (133)
61 cd00562 NifX_NifB This CD repr 43.9 53 0.0011 31.6 5.9 38 161-199 53-90 (102)
62 cd01138 FeuA Periplasmic bindi 39.7 55 0.0012 37.0 6.1 50 162-212 59-112 (248)
63 PLN02667 inositol polyphosphat 39.6 42 0.0009 39.5 5.1 70 1175-1259 23-99 (286)
64 COG1433 Uncharacterized conser 39.0 91 0.002 32.0 6.8 52 161-213 57-108 (121)
65 PF06296 DUF1044: Protein of u 33.1 1.4E+02 0.0031 30.6 7.1 78 1130-1207 2-107 (120)
66 cd01146 FhuD Fe3+-siderophore 32.7 95 0.0021 35.2 6.6 51 162-212 58-114 (256)
67 cd04743 NPD_PKS 2-Nitropropane 32.3 1.2E+02 0.0025 36.4 7.3 56 159-215 72-127 (320)
68 PRK03379 vitamin B12-transport 32.3 86 0.0019 36.0 6.2 50 162-212 65-122 (260)
69 PF01497 Peripla_BP_2: Peripla 32.2 1E+02 0.0022 34.2 6.7 51 163-213 54-112 (238)
70 PF12226 Astro_capsid_p: Turke 31.3 30 0.00064 36.8 1.9 51 1129-1185 102-155 (230)
71 COG1997 RPL43A Ribosomal prote 30.9 44 0.00095 32.1 2.7 43 517-588 32-74 (89)
72 cd00636 TroA-like Helical back 30.6 1.2E+02 0.0026 30.1 6.3 35 162-196 54-88 (148)
73 COG1504 Uncharacterized conser 30.3 1.8E+02 0.0039 29.3 6.9 51 164-214 56-112 (121)
74 cd01140 FatB Siderophore bindi 27.4 1.2E+02 0.0026 34.7 6.3 51 162-212 65-122 (270)
75 cd01147 HemV-2 Metal binding p 26.7 85 0.0018 35.6 4.9 51 162-212 67-126 (262)
76 cd01141 TroA_d Periplasmic bin 26.6 72 0.0016 34.4 4.1 33 162-194 62-95 (186)
77 cd01139 TroA_f Periplasmic bin 26.2 1.1E+02 0.0025 36.3 6.0 51 162-212 84-147 (342)
78 PF06677 Auto_anti-p27: Sjogre 24.4 44 0.00095 27.7 1.4 26 507-532 4-29 (41)
79 TIGR03151 enACPred_II putative 24.2 2.2E+02 0.0048 33.8 7.8 57 159-215 77-133 (307)
80 PRK11411 fecB iron-dicitrate t 21.1 2E+02 0.0043 33.8 6.6 51 162-212 94-151 (303)
81 COG1779 C4-type Zn-finger prot 20.8 94 0.002 34.4 3.4 41 517-575 11-51 (201)
No 1
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=100.00 E-value=8.9e-218 Score=2003.37 Aligned_cols=1262 Identities=50% Similarity=0.791 Sum_probs=948.3
Q ss_pred hhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCChhhHHHHHHHHHHHHhhccCcCCCCCCCCCcCCceE
Q 000605 11 MFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVK 90 (1397)
Q Consensus 11 ell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~~~~w~~~l~~l~~~a~~~v~~~~~~~~~~Di~~~Vk 90 (1397)
+.-.+-+...+....++.+..+|+++++.+|++.+.+++..+....+|.+++..|+|+|++.++|+.+.++.||+.+|||
T Consensus 286 ~~~~~~~~~ee~~~~m~~~~~~~fr~~~a~Llr~~~ls~~~d~~~~~W~~ii~~L~~eaa~~~kp~~~~~~~md~~~YVk 365 (1598)
T KOG0230|consen 286 EYKSKDKSAEEDEKVMRNVVESHFRALVAQLLRSENLSVVMDGAHQEWLDIITSLCWEAANLLKPDTDSGGLMDPGNYVK 365 (1598)
T ss_pred CccccccchhhcchhhhccccchHHHHHHHHhcccCcCccccchhhhHHHHHHHHHHHHHHhcCcCcccCCCcCcccceE
Confidence 33333344455667788899999999999999999999988877789999999999999999999998899999999999
Q ss_pred EEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 000605 91 VKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRP 170 (1397)
Q Consensus 91 Ikki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~rI~~~~p 170 (1397)
||||+||+..||++|+||||.|+++||.|++++++|||+|+.|+|||+|..+++.++++++.||++||+.+|+||.+++|
T Consensus 366 vK~I~~g~~~dS~vi~Gvv~sKn~~~k~M~~~~e~prilll~g~leyqrisn~lsS~etvlqqE~e~lk~~varI~s~~p 445 (1598)
T KOG0230|consen 366 VKCVAGGSRVDSEVIKGVVCSKNVAHKRMATKYENPRILLLGGPLEYQRISNQLSSIETVLQQEKEYLKKVVARIESLRP 445 (1598)
T ss_pred EEEecCCCcccceeeeEEEeecchhhhhhhhhccCCceEEEecchhhhhhhccccchHHHHhhHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCC
Q 000605 171 NVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKK 250 (1397)
Q Consensus 171 nVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~ 250 (1397)
|||+|+|+|+++|+++|.+.||+++.|||+..|+||||||||+|++++|.++.++||+|+.|+++++.++| +
T Consensus 446 ~vllVeksVS~~aqe~L~~k~I~lvlnvK~s~leRIsR~tga~I~~siDslt~~klg~C~~F~v~~~~e~h--------k 517 (1598)
T KOG0230|consen 446 DVLLVEKSVSRIAQELLLDKGISLVLNVKRSLLERISRCTGADIVPSVDSLTSQKLGYCELFRVENYVEEH--------K 517 (1598)
T ss_pred CeEEEechHHHHHHHHhhccCeEEEEeccHHHHHHHHHHhcCceecchhhhhccccCCCccHhhhhhhhcc--------c
Confidence 99999999999999999999999999999999999999999999999999999999999999999999864 5
Q ss_pred CCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccccccCC-CCccccccccc
Q 000605 251 PSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKMRLKHS-ISKPERMMADN 329 (1397)
Q Consensus 251 ~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~~~~~~-~~~~~~~~~~~ 329 (1397)
..||+|||+||+.++||||+|||++.+.|.+||++++++++++||+.+|.+|++|.||.......... ...+. ...+
T Consensus 518 ~sKTlmffegc~~~lG~TiLLrG~~~~eLkkVK~Vvq~~v~aay~l~LE~SflaDe~asi~~~~~~~~~~~~~~--~~~~ 595 (1598)
T KOG0230|consen 518 PSKTLMFFEGCPKPLGCTILLRGDSLEELKKVKHVVQYLVFAAYHLALETSFLADEGASISSPKLSIPTSVETS--IINR 595 (1598)
T ss_pred chhhhHHhhcCCCCCCceEEecCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccCCccccccccccceeccc--cccc
Confidence 67999999999999999999999999999999999999999999999999999999999875433322 11111 3345
Q ss_pred ccccCCCccccccccccccCCCCCCCccccccccCccccccccccCCCccccccccC---Cc---CCCCCCCc----cCC
Q 000605 330 AISAIPSSKVAANYQEVADDSTRDDGSVSLRLEHGGLESLSEQLNHSSVSSVPLFLD---HR---YGDGPTDA----CND 399 (1397)
Q Consensus 330 ~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sp~~~~~l~~~---~~---~~~~~~~~----~~~ 399 (1397)
+++++|+++..+.+.+.......+..+.+.....+ -++++|+..++++.. +. ++...... ...
T Consensus 596 ~~s~~~~~t~st~~~a~~~~~~~e~~~~~~~~~~~-------~ls~sp~~~~~~~~~~i~P~~~~~e~~~~~~~~~~~~~ 668 (1598)
T KOG0230|consen 596 SISTSPGETDSTAEKAPVEALQVEPNRFNGALSSE-------LLSSSPFLEFPLDLLEIAPGELVIETRLSSYSKGPKQN 668 (1598)
T ss_pred ccccCCCCCcchhcccchhhhccchhhhhcccccc-------eeecccccccCCCccccCCccceeecchhhhcCchhhc
Confidence 66677766554433332211122222333222212 234455544444321 00 10000000 000
Q ss_pred cCcccccc---cccc-cccc-ccccccccccchhhhHHHHHHHhhhhhhccc---cchhhccc--CccccccccccCCCc
Q 000605 400 NLEHDVGL---DFRS-FNEC-EDLKVSIVNSFDALQQELQEIMGQEERQLGE---SHELMKFE--GVNEDEVSGEYFSAA 469 (1397)
Q Consensus 400 ~~~~~~~~---~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~--~~~~~~~~~~~~~~p 469 (1397)
.+...... ++.+ ...+ ...+...-..+.. ........ ..+.+... ..++.+ ...+.++|
T Consensus 669 ~lv~~~es~~~~~~~s~~~~~~~l~e~~~~~~~~----------~~~k~~~~~~~~~~~~~~~~~~~~e~~-~s~~~~~~ 737 (1598)
T KOG0230|consen 669 GLVPAHESVLNDLHESTLSILSKLPETRSGTHEG----------NEDKGPGLEPELANNQNIQRPEETEEQ-SSKDALDP 737 (1598)
T ss_pred cccccccccccccccccccccccccchhcccchh----------ccccCccccccccccccccchhhhhhh-hcccCCCc
Confidence 01100000 0000 0000 0000000000000 00000000 00000000 111111 45567899
Q ss_pred CCCceEEEEEeeeecCCCCccCCCeEEEEeecCCCCCcHHHHHHHhhccCCCCCCCCchhhhcccceeeecCcEEEEEEE
Q 000605 470 DTNQSILVSFSSRCVLKGTVCERSRLLRIKFYGSFDKPLGRYLHGDLFNQTSCCRSCNESAEAHVLCYTHQQGNLTISVK 549 (1397)
Q Consensus 470 ~~HQ~I~VL~S~~~~~~~~~C~~P~lv~i~fY~~~D~tLGqFLe~~c~~~~~~C~sC~~pm~~H~r~yvH~~g~i~I~ve 549 (1397)
.+||+|+||||++|...+.+|++||+++|+|||++|++||+||+++||++.|.|++|++||++|+|+|||++||++|.|+
T Consensus 738 ~~HQsilVl~ss~~~~k~~~C~r~~l~~ikyy~~~D~~lg~fL~~~~f~~~~~C~sC~~~~laHv~~yvh~~g~l~I~v~ 817 (1598)
T KOG0230|consen 738 SSHQSILVLFSSRSVLKGSVCERPHLLRIKYYGSFDKPLGRFLRDYLFDQRYMCPSCNEPMLAHVRCYVHGNGSLTISVK 817 (1598)
T ss_pred cccceeEEEEeeeeeccCCccccccEEEEEeeccccchHhHHHHHHHhcccccCccccchHHHHHHHHhhccCceEEEee
Confidence 99999999999999977788999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCcCCCCCCCCcEEEEeecccCCCCCCCCCCcceEecccccccccHHHHHHHhccCccccCccCCCCCccccceeeec
Q 000605 550 CLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLELSFSNHATANRIASCGHSLQRDCLRYY 629 (1397)
Q Consensus 550 ~~~~~~lp~~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mS~~tw~ySFgKfLEL~F~~~~~~~~~~~C~H~~~rDhvryF 629 (1397)
+++.. +||+.+++||||+||.+|++. ||+|++|+||+++|++|||||||++||+|++..|+..|+|+|||||+|||
T Consensus 818 ~~~e~-l~~e~~~kI~~w~~ClkC~~~---~~sT~rv~~Sdaaw~lSfgKfLEl~fs~~a~~~R~~~C~Hsl~rD~L~ff 893 (1598)
T KOG0230|consen 818 KLPEL-LPGEQKGKIWMWSRCLKCNRF---PPSTRRVVMSDAAWGLSFGKFLELSFSNHATANRVASCGHSLHRDCLRFF 893 (1598)
T ss_pred ccccc-cccccCceEEEEeccccCCCC---CCCcceeEcchhhHhhhHHHHHHhhhccccccccccCCcchhhhhhhhhc
Confidence 99865 999999999999999999974 78999999999999999999999999999999999999999999999999
Q ss_pred ccCCeEEEEEeeeeeeeEEecCCceEEecCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccCCCchhHH
Q 000605 630 GFGSMIAIFRYSPIDILSVHLPPSVLEFNGLLQQEWIRKEAEELKVKMETLYAEISNVLEVMEQRSNSIGCEMSDSTDLK 709 (1397)
Q Consensus 630 ~~~~~v~~f~y~~I~v~ev~~P~~~i~~~~~~~~~~~~~e~~~i~~k~~~~~~~v~~~L~~i~~~~~~~~~~~~~~~~~~ 709 (1397)
||++|||+|+|++|++|+|.+||.++.|+ +.+++|+.+|.+++..||+.+|++|.++|++|+++. + -+
T Consensus 894 gf~~mva~f~ys~i~v~~v~lpp~~l~~~-~~~~~~~~~e~k~v~~k~~~~~n~v~~~l~~i~~~~-------~----~~ 961 (1598)
T KOG0230|consen 894 GFGNMVACFRYSPIEVYEVDLPPSKLEFN-HIQQEWLQEEIKEVIEKGEELYNEVLERLSRIAEKD-------E----NR 961 (1598)
T ss_pred ccCCceeeeeeccceeEEEeCChhhcccc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcc-------c----cc
Confidence 99999999999999999999999999999 888999999999999999999999999999998651 1 14
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHhhcCCCCCchhhhHHHHHHHHHHHHhhhhhhHHHHHHHhhhhcCcccccccCCch
Q 000605 710 SHILELKVQLESERNDYIGLLQPVVMETSEPGQTAVDILELNRLRRALLIGSHAWDRQLYSLNSLLKKGSIAKAKQGNAS 789 (1397)
Q Consensus 710 ~~~~el~~~l~~e~~~~~~~l~~~~~~~~~~~~~~~~~l~ln~~~r~l~~~~~~Wd~~~~~~~~~~~~~~~~~~~~~~~~ 789 (1397)
..+.+|+.++.+|+..|++.++..+.....-+++..|++.+|+.||+|...++.|+.+++.+...+| . .+..+....
T Consensus 962 ~~i~~l~~~l~~e~~~f~~~l~~~~~~~~~~~~~s~d~l~l~~~rr~l~~~s~~w~~~l~s~~~~~k-~--~~~~~~~~~ 1038 (1598)
T KOG0230|consen 962 PLIQELKELLKHEKKEFKQNLQPIFTLEVDDGQLSHDILALNRDRRALLASSYLWDERLISLSKSLK-L--ESSKDTKPK 1038 (1598)
T ss_pred chhhhhhhhhhhhHHHHHHhhhhhhhhccccCcchhhHHHHHHHHHHHHhhhccccccchhhhhhhc-c--ccccccccc
Confidence 5688999999999999999999999977766888899999999999999999999999998776554 1 111110000
Q ss_pred hhhhhhhcccccccC------CC--CCCCCcCCccC-CCCCCCCccccccccccccccCCCCCCCCCCCCcccccccc--
Q 000605 790 YAQLKELRTDLFCKD------SK--LDHDNEENVSG-SLDSLESPANDLHLQQKEELNLPTLEPFGSENSKLTSFLHN-- 858 (1397)
Q Consensus 790 ~~~~~~~~~~~~~~~------~~--~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e-- 858 (1397)
.. +...+...+-. .. ...|++...+. ....+.. ....++. ++. ....++....+.....+
T Consensus 1039 ~~--~~~~~~~~~r~p~~~k~~~~~~~~~~~~s~~~~~~~~~lp----~~~~s~~--~d~-~~~~~~~~~~~~~s~~~~~ 1109 (1598)
T KOG0230|consen 1039 ES--ETNSTAKRKRSPEPQKGVDEDSFLTDSSSDVSSLEHLNLP----LPEDSNS--TDT-GLSGPSEVLEDNESIDEML 1109 (1598)
T ss_pred cc--cccCccccccCchhhccccccccccccccccCccccccCC----CCCcccc--cch-hccCcccccccccchhhcc
Confidence 00 00000000000 00 00111110000 0000000 0000000 000 00000000000000000
Q ss_pred -cccccCCCcc-ccccchhhcccccCCCCCCCcccccCCCCCCCcccccccCCCCcccccCCCcccCcchhhhHHHHHhh
Q 000605 859 -REEDVHSDGE-ITSTLSEKIDSAWTGTDQVVPLVSQTDRPQAGFVGQISKIDNSPFKRLASPVRVHSFDSALRFQERIA 936 (1397)
Q Consensus 859 -~~~~~~s~~~-~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~er~~ 936 (1397)
.+....+... ....+.+.++++|.|....+.. .|..... ..
T Consensus 1110 ~~v~n~~s~~~~~~~~~~~~l~~~~~g~r~~~~~---------------------------~P~s~~~----------~~ 1152 (1598)
T KOG0230|consen 1110 GSVRNTYSLANKVRKILKQILDSATIGNRANPKS---------------------------SPFSGQD----------HS 1152 (1598)
T ss_pred cccccccchhhHHHHHHHHhcccccccccccCCC---------------------------CCCchhh----------hc
Confidence 0000000000 1122233334444333221100 0000000 00
Q ss_pred cCCCCCcccccccccccCCC-cccccccCCchhhHH-hhhhcCchhHhhhhhcccCCCccccc--cccccCCcccccCCC
Q 000605 937 RGLPHSLLHLSSIRSFHASG-DYRSMVRDPVSNVMR-TYSQILPLEAQKLNLILSSTPSFISS--ASRMVEGARLLLPQR 1012 (1397)
Q Consensus 937 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~-~~~~~~~~~~~k~~~~~~~~p~~~s~--~~~~~~~~~l~~P~~ 1012 (1397)
.+++-.+. .++..+ +.+.|++.|+.+++. ..........++........|.+++. ......+++|++| .
T Consensus 1153 ~~~~~~~~------~~~~~e~~~~~~~e~~~~~~~~~~~~~e~~lns~~~~~~~~~~~k~~~s~~~s~~~~~~rLl~p-~ 1225 (1598)
T KOG0230|consen 1153 TDLPLESN------PIHVLEKELSSWIEDPLTNMYYREATKELSLNSQKNSAETKEPPKYPSSESESEPESSSRLLLP-L 1225 (1598)
T ss_pred cccccccC------CccccccccHHHHhhhhhhHhHHHHHHHHHhhcchhhcccccCCcCcccccccccccccceecc-c
Confidence 01110000 111112 456788889888765 33333333334444444556666665 3344778899999 8
Q ss_pred CCCCceEEeeCCCchhhhhhhcCChhHHHHHHhhcccCCCCCCccccccCCCccc-cccccccCCCCcccccc-cCCCCC
Q 000605 1013 GDNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVS-SFSAWQSFGSLDLDYIH-YGSYGS 1090 (1397)
Q Consensus 1013 ~~~d~~viVrEdEPSSiIA~aLsS~dY~~~l~~~~~~~~~~~~~~~~~~~~~~~s-~~~~~~~~~~~d~~~~~-~~s~~~ 1090 (1397)
+.+|.+|+||||||+|+|||||+++.|..+..+. ....+ ..++.. ...+..... ....++
T Consensus 1226 ~~ndl~vp~~edpp~s~ia~al~s~~~~~q~~~p----------------~~sis~~~S~~~--~~~s~~~e~~~~~~~s 1287 (1598)
T KOG0230|consen 1226 GLNDLVVPVYEDPPPSLIAYALSSKERINQESSP----------------GLSISFSLSNLQ--GRLSKISEFDDTKSES 1287 (1598)
T ss_pred cCCcccCCcccCCCchhhhhhhcchhhccCCCCC----------------Cccccccccccc--cchhhhhhhhhhhhcc
Confidence 8999999999999999999999997776433210 00000 000000 000000000 000000
Q ss_pred CCCC------CCCCcccCCC--CCCCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCc
Q 000605 1091 EDAS------SSVGTLFTDP--KKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWS 1162 (1397)
Q Consensus 1091 ~~~~------~~~~~~~~~~--~~~~h~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~~~ 1162 (1397)
.+.+ ....+..+.. ....|++++|+++.. +|+|++|||++|++||+.||.++++||+||+||.+|.
T Consensus 1288 l~~s~l~~s~~~~~e~l~~~~~~~~~h~~~~f~egk~------k~svk~~yAe~F~~LR~~c~~sEe~fIrSLsRc~~W~ 1361 (1598)
T KOG0230|consen 1288 LDNSGLESSSYRRGENLQKSKLETRTHLEYQFSEGKA------KYSVKCYYAEQFRALRKICCPSEEDFIRSLSRCVKWE 1361 (1598)
T ss_pred ccccccchhhhcchhhccccccccccceeeeccCCce------EEEEEEEehhhHHHHHHhhCchHHHHHHHHhcCcccc
Confidence 0000 0111111223 667999999998865 9999999999999999999999999999999999999
Q ss_pred cCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhceEEEEeeecCCCeeEEEEEEE
Q 000605 1163 AQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMV 1242 (1397)
Q Consensus 1163 ~sgGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iV 1242 (1397)
++||||||+|+||.|+|||||+|++.|+++|++|||+||+||.++++++.||+||||||+|+|.+|++++|++.|++++|
T Consensus 1362 aqGGKSgs~F~KTlDDRFIiKq~sk~EleSFikFAP~YFkYl~~s~~~~~PT~LAKIlGiyqV~vK~~~sgke~K~DvmV 1441 (1598)
T KOG0230|consen 1362 AQGGKSGSFFAKTLDDRFIIKQMSKTELESFIKFAPAYFKYLTESISQKSPTCLAKILGIYQVSVKSPKSGKETKMDVMV 1441 (1598)
T ss_pred cCCCcccceeeccccchhhhhhccHHHHHHHHhhhHHHHHHHHHHHhcCCcchhhhhheeEEEEEecCCCCceeEeeeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eecccCCCcceeEEeCCCcccccccCCCCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccce
Q 000605 1243 MENLFFRRSISRVYDLKGSARSRYNTDTTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSL 1322 (1397)
Q Consensus 1243 MeNlf~~~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSL 1322 (1397)
||||||+++++|+||||||+|||+++.+++.+.||+|+||+++++++||||++++|+.|.++|||||.||+++|||||||
T Consensus 1442 MENLfY~r~vsRifDLKGS~RnR~v~~t~~~d~VLLDeNlVe~~~~sPIfV~~~sK~lL~~aiwNDT~FLas~~VMDYSL 1521 (1598)
T KOG0230|consen 1442 MENLFYGRKVSRIFDLKGSLRNRYVPTTSGADEVLLDENLVEMMWTSPIYVGSHSKRLLRRAIWNDTSFLASINVMDYSL 1521 (1598)
T ss_pred ehhhhhccccceeeeccchhhhccCCCCCCCceEEecHHHHhhhhcCCeeehHhHHHHHHHHHhcchHHhhhcccceeee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeeeecccceeeEeeeecccccchhhhHHHHhhhccccCCCCCCCCcccChhHHHHHHHHHHHhccccCCCCCCC
Q 000605 1323 LVGVDEERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKKRFRKAMTSYFLTVPDQWSS 1397 (1397)
Q Consensus 1323 Lvgi~~~~~~~~~GIID~l~~yt~~KklE~~~K~~~~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~f~~~p~~W~~ 1397 (1397)
|||||++++|||+||||||||||||||||+|||..| +||+++..||||+|++|++||++||++||++|||+|++
T Consensus 1522 LVGvD~e~~ELvlGIIDfiRtYTWDKkLESWVK~sG-l~gpk~~~PTVVSP~qYK~RFRkAMd~YfL~VPD~Wtg 1595 (1598)
T KOG0230|consen 1522 LVGVDDENNELVLGIIDFIRTYTWDKKLESWVKSSG-LGGPKNKQPTVVSPEQYKTRFRKAMDTYFLMVPDQWTG 1595 (1598)
T ss_pred EEEeeCCCCeEEEEehHhhhhhhhhhhhhhheeccc-cccCCCCCCceeCHHHHHHHHHHHHhheeeecCCcccC
Confidence 999999999999999999999999999999999999 67789999999999999999999999999999999985
No 2
>COG5253 MSS4 Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.5e-71 Score=630.57 Aligned_cols=357 Identities=35% Similarity=0.539 Sum_probs=296.0
Q ss_pred CCCceEEeeCCCchhhhhhhcCChhHHHHHHhhcccCCCCCCccccccCCCccccccccccCCCCcccccccCCCCCCC-
Q 000605 1014 DNDVVIAVFDDDPTSIISYALSSKEYEDWVADKLYDNDGSWSAGEIHKEGSAVSSFSAWQSFGSLDLDYIHYGSYGSED- 1092 (1397)
Q Consensus 1014 ~~d~~viVrEdEPSSiIA~aLsS~dY~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~d~~~~~~~s~~~~~- 1092 (1397)
+.|+.|++|||||||+|||||+++||+.++...+.+.-+ +... .+......-+... ..+|....
T Consensus 241 ~s~S~~iir~~~pss~~a~~~s~~d~~~k~mr~r~se~~----------De~~---l~~~~le~gh~n~--~~synmltg 305 (612)
T COG5253 241 FSDSDVIIREDEPSSLIAFCLSTSDYRNKMMRLRDSETM----------DERL---LNGMPLEGGHRNP--QESYNMLTG 305 (612)
T ss_pred cCccccccccCCcchhhhccccchhHHHHHHhhhhhhcc----------hhhh---ccccccccccccc--hhhhhhhhh
Confidence 578899999999999999999999999998755333111 0000 0000000000000 00000000
Q ss_pred --CCCCCCcccCCCCCCCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccCCCCcce
Q 000605 1093 --ASSSVGTLFTDPKKSPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNV 1170 (1397)
Q Consensus 1093 --~~~~~~~~~~~~~~~~h~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~~~~sgGKSgs 1170 (1397)
..-++-+-.|+.++..|.+++|..+.. .|+|++|||++|+.||++||+++. |+.++++|..|...||||||
T Consensus 306 irvtlsr~e~iM~~~tdth~~e~~~eg~~------~~s~K~y~~e~Fr~lR~l~g~~~a-lvsl~sryil~E~~~GKSGS 378 (612)
T COG5253 306 IRVTLSRIEEIMIKKTDTHLNEQFEEGLY------EFSCKDYFPEVFRELRALCGCDEA-LVSLLSRYILWESNGGKSGS 378 (612)
T ss_pred hHHHHHHHHHHhcCCcCccchhhccccce------eeeHHhhCHHHHHHHHHHhCCcHH-HHHHHhhhheeccCCCcccc
Confidence 000000123678889999999998755 899999999999999999999885 99999999999999999999
Q ss_pred eEEEecCCcEEEeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhceEEEEeee-cCCCeeEEEEEEEeecccCC
Q 000605 1171 FFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKH-LKGGKETKIDLMVMENLFFR 1249 (1397)
Q Consensus 1171 ~F~~T~D~rfiiKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~-~~~g~~~~~~~iVMeNlf~~ 1249 (1397)
|||||.|.|||||||++.|+..|..++-+|+.|+..| +.|+||||||+|+|+++. ...++..|+||||||||||+
T Consensus 379 ff~~trD~kfIiKti~hsE~~~~r~~~~eY~~~V~~n----p~T~l~ki~G~yrv~~~~s~~~~k~~K~~fiVMeNlf~~ 454 (612)
T COG5253 379 FFLFTRDYKFIIKTISHSEHICFRPMIFEYYVHVLFN----PLTLLCKIFGFYRVKSRSSISSSKSRKIYFIVMENLFYP 454 (612)
T ss_pred eEEEeccchhhhhhhhhhhHHHHHHHHHHHHHHHHcC----chHHHHHHhceeEEeccccccccccceeEEEEecccCCC
Confidence 9999999999999999999966666666666666554 669999999999999986 35667899999999999999
Q ss_pred CcceeEEeCCCcccccccCCCCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccceeeeeecc
Q 000605 1250 RSISRVYDLKGSARSRYNTDTTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE 1329 (1397)
Q Consensus 1250 ~~i~~~yDLKGS~~~R~~~~~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~ 1329 (1397)
+.++++|||||||+||++..+++...||+|+|.++.++++|+++....|+.|+.|||+|+.||+++||||||||||||..
T Consensus 455 ~~i~~ifDLKGS~~Nr~ve~~gk~~s~l~~mndv~wI~es~~~~~g~~Kk~~~sqv~~Dv~fLsklniMDYSllVgi~~~ 534 (612)
T COG5253 455 HGIHRIFDLKGSMRNRHVERTGKSMSVLLDMNDVEWIRESPKIVFGLKKKLLLSQVWNDVLFLSKLNIMDYSLLVGIDDE 534 (612)
T ss_pred CCcceEEeccCchhhhhhhhhccccchhccchhHHHHHhCchhhhhHHHHHHHHHHHHHHHHHHHhCccceeEEEEeccc
Confidence 99999999999999999999988999999998888888899999999999999999999999999999999999999999
Q ss_pred cceeeEe-eeecccc-cchhhhHHHHhhhccccCCC-CCCCCcccChhHHHHHHHHHHHhccccCCCCCC
Q 000605 1330 RKELVLG-IIDFMRQ-YTWDKHLETWVKASGILGGP-KNASPTIISPKQYKKRFRKAMTSYFLTVPDQWS 1396 (1397)
Q Consensus 1330 ~~~~~~G-IID~l~~-yt~~KklE~~~K~~~~~gg~-~~~~~T~v~P~~Y~~RF~~~m~~~f~~~p~~W~ 1396 (1397)
+.+..|| |||++|+ |||||++|.|+|..+..|+. +...||+|+|.+|++||++||+.|+..+|+.|+
T Consensus 535 ~~~~~V~~I~d~i~t~~t~Dk~~~~gI~d~lt~~s~~k~~~~t~v~p~~y~nrf~~~~e~yi~~~p~~~~ 604 (612)
T COG5253 535 REEASVGLIIDFIRTRMTGDKKLESGIKDKLTVGSFTKRKEPTAVTPRQYKNRFRKAMEAYIDPFPDKKT 604 (612)
T ss_pred hhhcchHHHHhhhccccccceeeeeehhhhhccceeeecccceecCHHHHHHHHHHhHHHhhhcccchhh
Confidence 9999999 9999999 99999999999999776653 457899999999999999999999999999997
No 3
>cd00139 PIPKc Phosphatidylinositol phosphate kinases (PIPK) catalyze the phosphorylation of phosphatidylinositol phosphate on the fourth or fifth hydroxyl of the inositol ring, to form phosphatidylinositol bisphosphate. CD alignment includes type II phosphatidylinositol phosphate kinases (PIPKII-beta), type I andII PIPK (-alpha, -beta, and -gamma) kinases and related yeast Fab1p and Mss4p kinases. Signaling by phosphorylated species of phosphatidylinositol regulates secretion, vesicular trafficking, membrane translocation, cell adhesion, chemotaxis, DNA synthesis, and cell cycling. The catalytic core domains of PIPKs are structurally similar to PI3K, PI4K, and cAMP-dependent protein kinases (PKA), the dimerization region is a unique feature of the PIPKs.
Probab=100.00 E-value=1.2e-67 Score=605.22 Aligned_cols=255 Identities=48% Similarity=0.847 Sum_probs=235.5
Q ss_pred ceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCccC-CCCcceeEEEecCCcEEEeccCHHHHHHHHHHHHHHHH
Q 000605 1124 KVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQ-GGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFK 1202 (1397)
Q Consensus 1124 ~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~~~~s-gGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~lp~Yf~ 1202 (1397)
...|+|++|+|.+|++||++||+++++|+.||+++..|..+ ||||||+||+|.|+|||||||+++|++.|+++||+||+
T Consensus 54 ~~~f~fk~Y~P~vF~~lR~~~gi~~~dy~~Sl~~~~~~e~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~Lp~Y~~ 133 (313)
T cd00139 54 SADFKFKDYCPEVFRALRELFGIDEADYLRSLCRSPLWELSSGGKSGSFFYKTLDDRFIIKTVSHSEIESLLKFLPNYYE 133 (313)
T ss_pred CccEEEEEeCHHHHHHHHHHcCCCHHHHHHHhcCCCCccCCCCCCCCCEEEEecCCcEEEEecCHHHHHHHHHHHHHHHH
Confidence 45899999999999999999999999999999999988765 99999999999999999999999999999999999999
Q ss_pred HHHhhCCCCC-CchhhhhhceEEEEeeecCCCeeEEEEEEEeecccCC-CcceeEEeCCCcccccccCCC--CCCccccc
Q 000605 1203 YLTDSLNSRS-PTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFR-RSISRVYDLKGSARSRYNTDT--TGTNKVLL 1278 (1397)
Q Consensus 1203 y~~~~~~~~~-~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~ 1278 (1397)
||.+| + +|||+||||+|+|++++ |...+++||||+|+|++ ..|+++||||||+++|.+.+. .....|||
T Consensus 134 ~~~~n----~~~TLL~k~~Gl~~i~~~~---~~~~~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~vlK 206 (313)
T cd00139 134 YITQN----PQNTLLPKFFGLYRVKVKS---GTGKKVDFLVMENLFYSRLKIHRKYDLKGSTRNREASKKEKQKENPVLK 206 (313)
T ss_pred HHHhC----CCCcchhhheEEEEEEEcC---CCCceEEEEEEecCCCCCccceEEEECCCCCCCCCcCcccccCCccccc
Confidence 99997 4 79999999999999864 23357899999999998 799999999999999998763 34678999
Q ss_pred chhhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccceeeeeecccceeeEeeeecccccchhhhHHHHhhhcc
Q 000605 1279 DMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEERKELVLGIIDFMRQYTWDKHLETWVKASG 1358 (1397)
Q Consensus 1279 D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~~~~~~GIID~l~~yt~~KklE~~~K~~~ 1358 (1397)
|.||++.. +.+|+|+++.|+.|++||++||+||+++||||||||||||..+.+|++|||||||+|||+||+|+|+|+.+
T Consensus 207 D~df~~~~-~~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGi~~~~~i~~~GIID~L~~y~~~Kk~E~~~K~~~ 285 (313)
T cd00139 207 DLNLLEMI-EQPLFVGEHSKKALLTQIKRDCEFLESLNIMDYSLLVGIHDIRLVLYLGIIDILRTYTWDKKLEHWVKSLG 285 (313)
T ss_pred hhhhHhhc-CceEEeCHHHHHHHHHHHHHHHHHHHHCCCcccceEEEEecCCceEEEEEEeeeeeCCHHHHHHHHHHHhc
Confidence 99999976 57999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred ccCCCCCCCCcccChhHHHHHHHHHHHhccc
Q 000605 1359 ILGGPKNASPTIISPKQYKKRFRKAMTSYFL 1389 (1397)
Q Consensus 1359 ~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~f~ 1389 (1397)
..+ +..||||+|++|++||++||++||+
T Consensus 286 ~~~---~~~iS~v~P~~Y~~RF~~fi~~~f~ 313 (313)
T cd00139 286 HDG---GKTPSVVSPEQYAKRFREFMDKYFL 313 (313)
T ss_pred cCC---CCCcceECHHHHHHHHHHHHHHhcC
Confidence 322 2579999999999999999999995
No 4
>smart00330 PIPKc Phosphatidylinositol phosphate kinases.
Probab=100.00 E-value=1.1e-66 Score=604.63 Aligned_cols=264 Identities=42% Similarity=0.725 Sum_probs=239.7
Q ss_pred CCceEEEEcCCCCCCCcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccc-CccCCCCcceeEEEecCCcEEEecc
Q 000605 1107 SPHLTISFGDESSTAGGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK-WSAQGGKSNVFFAKSLDERFIIKQV 1185 (1397)
Q Consensus 1107 ~~h~~~~f~~~~~~~~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~-~~~sgGKSgs~F~~T~D~rfiiKti 1185 (1397)
..|.+++|..... .|+|++|+|++|++||++||+++++|++||++|.. |.++||||||+||+|.|+|||||||
T Consensus 16 ~~~~~~~~~~~~~------~~~~~~Y~P~~F~~lR~~~~i~~~~y~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiiKti 89 (342)
T smart00330 16 PGHLELTPSHGSA------DFKFKDYCPEVFRNLRELFGIDPADYLRSLCRSPPLELSSGGKSGSFFYLSLDDRFIIKTV 89 (342)
T ss_pred CCcccccCCCCCc------cEEEEEeCHHHHHHHHHHcCCCHHHHHHHhCCCCccccCCCCCCCCEEEEecCCcEEEEec
Confidence 4556677766654 89999999999999999999999999999999986 9999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhceEEEEeeecCCCeeEEEEEEEeecccC-CCcceeEEeCCCcccc
Q 000605 1186 KKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFF-RRSISRVYDLKGSARS 1264 (1397)
Q Consensus 1186 s~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~-~~~i~~~yDLKGS~~~ 1264 (1397)
++.|++.|+++||.||+||.+| ++|||+||||+|+|.++ +|+..+++||||+|||+ +..|+++||||||+++
T Consensus 90 ~~~E~~~l~~~lp~Y~~~~~~n----~~SlL~ki~Gly~i~~~---~~~~~~~~fiVM~NlF~~~~~i~~~yDLKGS~~~ 162 (342)
T smart00330 90 SKSEIKSLLPMLPNYYEHIVQN----PNTLLPKFFGLYRVKVK---GGTEKKIYFLVMENLFYSDLKVHRKYDLKGSTRG 162 (342)
T ss_pred CHHHHHHHHHHHHHHHHHHHhC----CCcchhhhcEEEEEEEC---CCcceeEEEEEEecCCCCCCceeEEEECCCCCCC
Confidence 9999999999999999999986 68999999999999875 34456799999999999 6799999999999999
Q ss_pred cccCC-CCCCcccccchhhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccceeeeeecccc------------
Q 000605 1265 RYNTD-TTGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEERK------------ 1331 (1397)
Q Consensus 1265 R~~~~-~~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~~------------ 1331 (1397)
|.+.. ......||||.||.+. .+.+|+|+++.|+.|++||++||+||+++||||||||||||....
T Consensus 163 R~~~~~~~~~~~vlkD~df~~~-~~~~i~l~~~~k~~l~~ql~~D~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~ 241 (342)
T smart00330 163 READKKKVKELPVLKDLDLVEM-WNQPIYVDPLAKKALLKQIKRDCEFLESLKIMDYSLLVGIHDIERGQREEIELPPVY 241 (342)
T ss_pred CCcCccccCCCCcccccchhhc-cCCeEEECHHHHHHHHHHHHHHHHHHHHccchhhhhhhccccccccchhcccccccc
Confidence 99865 2345789999999987 567999999999999999999999999999999999999986432
Q ss_pred ------------------------------------------------eeeEeeeecccccchhhhHHHHhhhccccCCC
Q 000605 1332 ------------------------------------------------ELVLGIIDFMRQYTWDKHLETWVKASGILGGP 1363 (1397)
Q Consensus 1332 ------------------------------------------------~~~~GIID~l~~yt~~KklE~~~K~~~~~gg~ 1363 (1397)
+|++|||||||+|||+||+|||+|+.+. +
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vy~iGIID~Lq~Y~~~KklE~~~K~~~~-~-- 318 (342)
T smart00330 242 GSDESPSSESSNGGKAPDITGNLLVSNSPDGDGPFGGIPARAIRARRVVLYLGIIDILQTYTWDKKLEHWVKSIGH-D-- 318 (342)
T ss_pred cccccccccccccCCCccccccccccccccccccccccccccccCCceEEEEEEEEEEEeCCHhHHHHHHHHHhcc-C--
Confidence 7999999999999999999999999732 2
Q ss_pred CCCCCcccChhHHHHHHHHHHHhcc
Q 000605 1364 KNASPTIISPKQYKKRFRKAMTSYF 1388 (1397)
Q Consensus 1364 ~~~~~T~v~P~~Y~~RF~~~m~~~f 1388 (1397)
+..||||+|++|++||++||++||
T Consensus 319 -~~~iS~V~P~~Y~~RF~~fi~~~F 342 (342)
T smart00330 319 -GKTISVVHPEQYAKRFRDFMDKYF 342 (342)
T ss_pred -CCCcceECHHHHHHHHHHHHHhhC
Confidence 357999999999999999999998
No 5
>KOG0229 consensus Phosphatidylinositol-4-phosphate 5-kinase [Signal transduction mechanisms]
Probab=100.00 E-value=2.1e-58 Score=526.87 Aligned_cols=250 Identities=35% Similarity=0.591 Sum_probs=224.9
Q ss_pred eEEEEEcCHHHHHHHHHHcCCChHHHHHhhcccccCc--cCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHHHHHHHH
Q 000605 1126 KFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWS--AQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKY 1203 (1397)
Q Consensus 1126 ~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~~~--~sgGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~lp~Yf~y 1203 (1397)
.|.+++|+|.+|+.||++|||+++||+.|||+..... +++|||||+||.|.|+|||||||.++|++.++++||.||+|
T Consensus 97 ~Fk~KdYcP~vFR~lRelFgId~~DYl~Slc~~~~l~e~sspGksGS~Fy~S~DdrFiIKTv~~~E~~~l~~mLp~Yy~~ 176 (420)
T KOG0229|consen 97 DFKFKDYCPMVFRNLRELFGIDPADYLLSLCGNPPLRELSSPGKSGSFFYLSYDDRFIIKTVRKSEVKVLLKMLPGYYQH 176 (420)
T ss_pred ccchhhcChHHHHHHHHHhCCChHHHHHHHhcchhhhhccCCCCccceEEEecCceEEEEeccHHHHHHHHHHHHHHHHH
Confidence 6889999999999999999999999999999986654 77799999999999999999999999999999999999999
Q ss_pred HHhhCCCCCCchhhhhhceEEEEeeecCCCeeEEEEEEEeecccCCC-cceeEEeCCCcccccccCCC--CCCcccccch
Q 000605 1204 LTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDT--TGTNKVLLDM 1280 (1397)
Q Consensus 1204 ~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~ 1280 (1397)
+.++ ++.|||+||||+|+|+.. +|+ +++||||+|+|..+ .||++||||||+++|.+.+. .++..+|||.
T Consensus 177 v~~~---~~~TLl~kf~Gly~vk~~---gg~--k~yfvVM~Nlf~~~~~iH~kyDLKGSt~~R~askke~~k~~pTlKDl 248 (420)
T KOG0229|consen 177 VVEQ---NNRTLLPKFFGLYRVKPD---GGK--KIYFVVMNNLFPSRLKVHRKYDLKGSTVGREASKKEKIKELPTLKDL 248 (420)
T ss_pred HHcc---CCceeehhhceeEEEeeC---CCc--eEEEEEecccCCCccceeEEeecCCCcccccccchhhccCCCccccc
Confidence 9985 456999999999999874 454 57999999999985 99999999999999998653 2467899999
Q ss_pred hhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccceeeeeecc-------------------------------
Q 000605 1281 NLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE------------------------------- 1329 (1397)
Q Consensus 1281 n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~------------------------------- 1329 (1397)
||++. ...|+|++..++.|+.||++||+||++.+|||||||||||..
T Consensus 249 Df~~~--~~~~~l~~~~~~~l~~ql~~Dce~Le~~~IMDYSLLvGiH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 326 (420)
T KOG0229|consen 249 DFLNE--GQKLYLGKEAKKALLKQLKRDCEFLESLKIMDYSLLVGIHDRDRGQAEKEELEPQEDESEREQRLSSASPEDV 326 (420)
T ss_pred hhhcc--CceEecCHHHHHHHHHHHHHHHHHHHHhcchhhhheeeeeeccccccchhhcCCCCCcccccccccccccccc
Confidence 99983 458999999999999999999999999999999999999731
Q ss_pred --------------------------------------cceeeEeeeecccccchhhhHHHHhhhccccCCCCCCCCccc
Q 000605 1330 --------------------------------------RKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTII 1371 (1397)
Q Consensus 1330 --------------------------------------~~~~~~GIID~l~~yt~~KklE~~~K~~~~~gg~~~~~~T~v 1371 (1397)
+..||+||||+||.|+..||+||.+|+. ..+ ...+|+|
T Consensus 327 ~~~~~~~~i~~g~~~p~~~~~~~~~~~~~~~~~~~~~~~~v~y~GIIDILq~Y~~~KK~EH~~Ksl--~~d--~~tIS~v 402 (420)
T KOG0229|consen 327 LTSTASPSIQLGANMPARAGEERVDRMEYAPAQNSGGYDVVLYIGIIDILQDYDIKKKLEHAYKSL--QHD--PDTISAV 402 (420)
T ss_pred CCCCCcccccCCCCCCCccccccccccccccccccCcceEEEEEEeehhhhhcchhhHHHHHHhhh--ccC--Cceeecc
Confidence 0138999999999999999999999997 433 3579999
Q ss_pred ChhHHHHHHHHHHHhccc
Q 000605 1372 SPKQYKKRFRKAMTSYFL 1389 (1397)
Q Consensus 1372 ~P~~Y~~RF~~~m~~~f~ 1389 (1397)
+|++|++||++||.+.|.
T Consensus 403 ~P~~Ys~RF~dFi~~~~~ 420 (420)
T KOG0229|consen 403 DPKFYAKRFLDFISNIFF 420 (420)
T ss_pred CHHHHHHHHHHHHHhhcC
Confidence 999999999999999874
No 6
>PF01504 PIP5K: Phosphatidylinositol-4-phosphate 5-Kinase; InterPro: IPR002498 This entry represents a conserved region from the common kinase core found in the type I phosphatidylinositol-4-phosphate 5-kinase (PIP5K) family as described in []. This region is found in I, II and III phosphatidylinositol-4-phosphate 5-kinases (PIP5K enzymes). PIP5K catalyses the formation of phosphoinositol-4,5-bisphosphate via the phosphorylation of phosphatidylinositol-4-phosphate a precursor in the phosphinositide signalling pathway.; GO: 0016307 phosphatidylinositol phosphate kinase activity, 0046488 phosphatidylinositol metabolic process; PDB: 1BO1_A 2GK9_C 2YBX_B.
Probab=100.00 E-value=1.6e-56 Score=503.72 Aligned_cols=222 Identities=36% Similarity=0.629 Sum_probs=155.2
Q ss_pred hhccc--ccCccCCCCcceeEEEecCCcEEEeccCHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhceEEEEeeecC
Q 000605 1154 SLSRS--RKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLK 1231 (1397)
Q Consensus 1154 Sl~~~--~~~~~sgGKSgs~F~~T~D~rfiiKtis~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~ 1231 (1397)
|||.+ ..|.+++|||||+||+|.|+|||||||+++|++.|+++||+||+||.++ +.|||+||||+|+|...
T Consensus 2 sl~~~~~~~~~~s~GKSGs~F~~T~D~kfiiKti~~~E~~~l~~~lp~Y~~~~~~~----~~SlL~r~~Gl~~i~~~--- 74 (252)
T PF01504_consen 2 SLCNLSSLSEKSSGGKSGSFFFFTSDGKFIIKTISKSEFKFLLKILPAYFEHMSEN----PNSLLPRFYGLYSIKKS--- 74 (252)
T ss_dssp ---------ES---SSSSS-EEE-TTSSEEEEEE-HHHHHHHHHHHHHHHHHHHHT----TTSSS--EEEEEEE-EE---
T ss_pred CccccccccccCCCCCccCEEEEeCCCCEEEEeCCHHHHHHHHHHHHHHHHHHHhC----cCchHHHHHHHheeccc---
Confidence 67654 6789999999999999999999999999999999999999999999997 45999999999999542
Q ss_pred CCeeEEEEEEEeecccCC-CcceeEEeCCCcccccccCCC--CCCcccccchhhhhhccCCccccChHHHHHHHHHHHhh
Q 000605 1232 GGKETKIDLMVMENLFFR-RSISRVYDLKGSARSRYNTDT--TGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWND 1308 (1397)
Q Consensus 1232 ~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS~~~R~~~~~--~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~D 1308 (1397)
+| ..+++||||+|+|++ ..++++||||||+++|.+.+. .....|+||.||.+.. .+|+|+++.++.|++||++|
T Consensus 75 ~~-~~~~~fvVM~N~f~~~~~i~~~yDLKGs~~~R~~~~~~~~~~~~~lkD~df~~~~--~~i~l~~~~~~~l~~ql~~D 151 (252)
T PF01504_consen 75 NG-KEKIYFVVMENLFYTPRNIHERYDLKGSTVGRKAKKKDREQTEPVLKDLDFIESK--RKIHLGPEQKEELLKQLERD 151 (252)
T ss_dssp TT--EEEEEEEEE-SS-SSS--SEEEEE--SSSSS-S-CHHHCSSS-EEEHHHHHHTT----SBS-SCHHHHHHHHHHHH
T ss_pred CC-ceeEEEEEECCCccCCcccceEEecCCcccCCCCCccccccccceeecccccccC--cEEEeChHHHHHHHHHHHHH
Confidence 34 467899999999998 799999999999999998652 2357899999999864 69999999999999999999
Q ss_pred HhhhccCCccccceeeeee------------------------cccceeeEeeeecccccchhhhHHHHhhhccccCCCC
Q 000605 1309 TSFLASVDVMDYSLLVGVD------------------------EERKELVLGIIDFMRQYTWDKHLETWVKASGILGGPK 1364 (1397)
Q Consensus 1309 t~FL~~~~imDYSLLvgi~------------------------~~~~~~~~GIID~l~~yt~~KklE~~~K~~~~~gg~~ 1364 (1397)
|+||+++|||||||||||+ ..+..|++|||||||+|||+|++|+++|..+..+
T Consensus 152 ~~FL~~~~imDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~s~~~~~vy~~GIID~L~~y~~~K~~E~~~K~~~~~~--- 228 (252)
T PF01504_consen 152 TEFLSSHNIMDYSLLVGIHNRDSNEEQENKSSFPSYAGGIMSEDGNEVYYLGIIDILQEYNWKKKLEHFFKSLIKCD--- 228 (252)
T ss_dssp HHHHHHTTEES-EEEEEEEH---HHHHHH-H---TTTTTTCCCETTEEEEEEEE-S-EETT-------------------
T ss_pred HHHHHhccccccceeEeeeeccccccccccccccccccceeecCCCeEEEEEEehheeeccHHHHHHHHHHHHhhcC---
Confidence 9999999999999999999 3567899999999999999999999999974332
Q ss_pred CCCCcccChhHHHHHHHHHHHhcc
Q 000605 1365 NASPTIISPKQYKKRFRKAMTSYF 1388 (1397)
Q Consensus 1365 ~~~~T~v~P~~Y~~RF~~~m~~~f 1388 (1397)
+..+|||+|++|++||++||++||
T Consensus 229 ~~~iS~v~P~~Y~~RF~~~i~~~f 252 (252)
T PF01504_consen 229 GQDISCVPPEEYAERFIKFIESIF 252 (252)
T ss_dssp --SSS---HHHHHHHHHHHHHHH-
T ss_pred CCCCcccCHHHHHHHHHHHHHHhC
Confidence 357999999999999999999998
No 7
>PLN03185 phosphatidylinositol phosphate kinase; Provisional
Probab=100.00 E-value=3.6e-55 Score=542.79 Aligned_cols=264 Identities=29% Similarity=0.444 Sum_probs=226.9
Q ss_pred CceEEEEcCCCCC--C-CcceeEEEEEcCHHHHHHHHHHcCCChHHHHHhhccccc--CccCCCCcceeEEEecCCcEEE
Q 000605 1108 PHLTISFGDESST--A-GGKVKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRK--WSAQGGKSNVFFAKSLDERFII 1182 (1397)
Q Consensus 1108 ~h~~~~f~~~~~~--~-~~~~~~~~~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~~~--~~~sgGKSgs~F~~T~D~rfii 1182 (1397)
..+++.|...+.. + .....|+|++|+|.+|++||++|||++++|+.||+.+.. +.+++|||||+||+|.|+||||
T Consensus 382 ~~~~~~fp~~gs~~tp~h~~~~fkfkdY~P~vFr~LR~~fgId~~dyl~Sl~~~~~l~el~S~GKSGS~Fy~S~D~rFiI 461 (765)
T PLN03185 382 ASFWMNFPKAGSQLTPSHQSEDFKWKDYCPMVFRNLREMFKIDAADYMMSICGNDALRELSSPGKSGSVFFLSQDDRFMI 461 (765)
T ss_pred EEEEEEcCcccCccCCCCccCceEEEEECHHHHHHHHHHhCCCHHHHHHhccCCccchhccCCCCcCCeEEEecCCcEEE
Confidence 3444556544321 1 112469999999999999999999999999999987644 4589999999999999999999
Q ss_pred eccCHHHHHHHHHHHHHHHHHHHhhCCCCCCchhhhhhceEEEEeeecCCCeeEEEEEEEeecccCC-CcceeEEeCCCc
Q 000605 1183 KQVKKTELESFEEFAPEYFKYLTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFR-RSISRVYDLKGS 1261 (1397)
Q Consensus 1183 Ktis~~E~~~f~~~lp~Yf~y~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~-~~i~~~yDLKGS 1261 (1397)
|||+++|++.|+++||+||+||..| ++|||+||||+|+|+.. +| .+++||||+|||++ ..|+++||||||
T Consensus 462 KTI~k~E~~~l~~iLp~Y~~hv~~n----~~TLL~kf~Gl~~i~~~---~g--~k~~fvVM~NlF~~~~~I~~~yDLKGS 532 (765)
T PLN03185 462 KTLRKSEVKVLLRMLPDYHHHVKTY----ENTLITKFFGLHRIKPS---SG--QKFRFVVMGNMFCTELRIHRRFDLKGS 532 (765)
T ss_pred EecCHHHHHHHHHHHHHHHHHHhhC----CCcchhhheEEEEEEeC---CC--cEEEEEEEecCCCCCCccceEEECCCC
Confidence 9999999999999999999999886 67999999999999753 34 35899999999997 589999999999
Q ss_pred ccccccCCC-CCCcccccchhhhhhccCCccccChHHHHHHHHHHHhhHhhhccCCccccceeeeeeccc----------
Q 000605 1262 ARSRYNTDT-TGTNKVLLDMNLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEER---------- 1330 (1397)
Q Consensus 1262 ~~~R~~~~~-~~~~~vl~D~n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~~imDYSLLvgi~~~~---------- 1330 (1397)
+++|.+... ...+.||||.||. .+|+|.++.|+.|++||++||+||+++||||||||||||...
T Consensus 533 t~~R~~~k~~~~~~~tlKDlD~~-----~~~~l~~~~k~~l~~qL~~D~~FL~~~~IMDYSLLvGIh~~~~~~~~~~~~~ 607 (765)
T PLN03185 533 SLGRSADKVEIDENTTLKDLDLN-----YSFYLEPSWRDALLRQIEIDSKFLEAQRIMDYSLLLGVHFRAPQHLRSLLPY 607 (765)
T ss_pred CCCCCCccccccCCCeeeecCcC-----ceEeeCHHHHHHHHHHHHHHHHHHhHCcCeecceEEEEEecChhhhcccccc
Confidence 999997542 2356899999994 378999999999999999999999999999999999998210
Q ss_pred --------------------------------------------------------------------------------
Q 000605 1331 -------------------------------------------------------------------------------- 1330 (1397)
Q Consensus 1331 -------------------------------------------------------------------------------- 1330 (1397)
T Consensus 608 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~m 687 (765)
T PLN03185 608 SRSITADGLEVVAEEDTIEDEELSYPEGLVLVPRGADDGSTVPGPHIRGSRLRASAAGDEEVDLLLPGTARLQIQLGVNM 687 (765)
T ss_pred cccccccccccccccccccccccccccccccccccccccccCCCcccccccccccccCchhhhhccccccccchhhcccC
Confidence
Q ss_pred -----------------------ceeeEeeeecccccchhhhHHHHhhhccccCCCCCCCCcccChhHHHHHHHHHHHhc
Q 000605 1331 -----------------------KELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPKQYKKRFRKAMTSY 1387 (1397)
Q Consensus 1331 -----------------------~~~~~GIID~l~~yt~~KklE~~~K~~~~~gg~~~~~~T~v~P~~Y~~RF~~~m~~~ 1387 (1397)
-.||+|||||||.|+..|||||++|++ .. +...||+|+|+.|++||++||.+.
T Consensus 688 para~~~~~~~~~~~~~~~e~~d~~~~~giidilq~y~~~k~~eh~~k~~--~~--~~~~is~v~p~~y~~rf~~f~~~~ 763 (765)
T PLN03185 688 PARAERIPGREDKEKQSFHEVYDVVLYLGIIDILQEYNMSKKIEHAYKSL--QF--DSLSISAVDPTFYSKRFLEFIQKV 763 (765)
T ss_pred chhhhcccccccccccccCcccceEEEEEEEEeecccchhHHHHHHHhhh--cc--CCCceeccChHHHHHHHHHHHHhh
Confidence 027899999999999999999999997 32 346799999999999999999999
Q ss_pred cc
Q 000605 1388 FL 1389 (1397)
Q Consensus 1388 f~ 1389 (1397)
|+
T Consensus 764 f~ 765 (765)
T PLN03185 764 FP 765 (765)
T ss_pred cC
Confidence 84
No 8
>cd03334 Fab1_TCP TCP-1 like domain of the eukaryotic phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinase Fab1. Fab1p is important for vacuole size regulation, presumably by modulating PtdIns(3,5)P2 effector activity. In the human homolog p235/PIKfyve deletion of this domain leads to loss of catalytic activity. However no exact function this domain has been defined. In general, chaperonins are involved in productive folding of proteins.
Probab=100.00 E-value=2.5e-48 Score=440.06 Aligned_cols=259 Identities=57% Similarity=0.916 Sum_probs=242.3
Q ss_pred HHHHHHHHHhCCCCcccCChhhHHHHHHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccC
Q 000605 36 ALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIK 115 (1397)
Q Consensus 36 al~~qLl~~~~i~~~sk~~~~~w~~~l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a 115 (1397)
+++.|||..+++. +.+.|.+.|++|+++|+..+.++...++.+|+.++|+|+|++||++.||++|+|+||+|+++
T Consensus 2 ~~~~~~~~~~~~~-----~~~~~~~~ls~l~v~Av~~v~~~~~~~~~~di~~~I~I~ki~Ggs~~dS~li~Gvvi~k~~~ 76 (261)
T cd03334 2 ALLAQLLKDEGIS-----NDESWLDILLPLVWKAASNVKPDVRAGDDMDIRQYVKIKKIPGGSPSDSEVVDGVVFTKNVA 76 (261)
T ss_pred hHHHHHHHhcCCC-----ChHHHHHHHHHHHHHHHHHhhcccccCCccChhHceEEEEecCCCHHHcEEEeeEEEeCCCC
Confidence 6889999999998 56799999999999999999764333457999778999999999999999999999999999
Q ss_pred CCCCcceecCccEEEEeeecccccCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEE
Q 000605 116 HKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV 195 (1397)
Q Consensus 116 ~k~Mp~~i~nprIlll~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi 195 (1397)
|++||++++||||+|++|||||+++++++.+++.++++|++|++++|++|+++|||||||+|+|+++|++||.++||+++
T Consensus 77 ~~~m~~~i~n~kIlll~~~Le~~~~~~~~~~~~~~~~~E~~~l~~~v~kI~~~g~nvIl~~k~I~~~a~~~l~k~gI~~v 156 (261)
T cd03334 77 HKRMPSKIKNPRILLLQGPLEYQRVENKLLSLDPVILQEKEYLKNLVSRIVALRPDVILVEKSVSRIAQDLLLEAGITLV 156 (261)
T ss_pred CccCCcccCCCcEEEEeeeeccccccCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCccCHHHHHHHHHCCCEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccChHHHHHHHHHhCCeEccccc-cCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccC
Q 000605 196 LNVKRPLLERIARCTGALITPSID-NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGK 274 (1397)
Q Consensus 196 ~~Vk~~~LerIar~TgA~Ii~s~d-~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~ 274 (1397)
++|++.+|+|||+||||+|+++++ .++++.||+|+.|++++++++ + ...++|+||+||+.+.+|||+|||+
T Consensus 157 ~~v~~~dl~rIa~~tGa~ii~~i~~~~~~~~lG~~~~v~~~~ig~~------~--~~~~~~~~~~~~~~~~~~TIlLRG~ 228 (261)
T cd03334 157 LNVKPSVLERISRCTGADIISSMDDLLTSPKLGTCESFRVRTYVEE------H--GRSKTLMFFEGCPKELGCTILLRGG 228 (261)
T ss_pred EecCHHHHHHHHHHhCCEEecChhhhcCcccCcCcceEEEEEecCc------C--CCceeEEEEecCCCCceeEEEEECC
Confidence 999999999999999999999954 888999999999999999862 1 1237999999999999999999999
Q ss_pred CHHHHHHHHHHHHHHHHHHHHhhccCeeecCCC
Q 000605 275 CREELKKVKHVVQYAVFAAYHLSLETSFLADEG 307 (1397)
Q Consensus 275 s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggG 307 (1397)
+.++|+|+||+++||++++||+++|.+++.+.|
T Consensus 229 t~~~lde~eR~i~Dal~v~~~~~le~~~~~~~~ 261 (261)
T cd03334 229 DLEELKKVKRVVEFMVFAAYHLKLETSFLADEF 261 (261)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC
Confidence 999999999999999999999999999988754
No 9
>TIGR02344 chap_CCT_gamma T-complex protein 1, gamma subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT gamma chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.4e-47 Score=473.31 Aligned_cols=297 Identities=27% Similarity=0.432 Sum_probs=273.5
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH------------------hCCCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~l~~ 64 (1397)
|++|+|||+||++|.+|++.|+||..|+.||.+|+...+..+ +.+++++|. ...|.+.|++
T Consensus 91 tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sk~-~~~~~~~ls~ 169 (525)
T TIGR02344 91 TSVIILAGEMLSVAEPFLEQNIHPTIIIRAYKKALDDALSVLEEISIPVDVNDDAAMLKLIQSCIGTKF-VSRWSDLMCD 169 (525)
T ss_pred chhHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCHHHHHHHHHHhhcccc-chhHHHHHHH
Confidence 688999999999999999999999999999999987544333 333444543 3579999999
Q ss_pred HHHHHhhccCcCCC-CCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcC-
Q 000605 65 IAWQAANFVKPDTS-RGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPN- 142 (1397)
Q Consensus 65 l~~~a~~~v~~~~~-~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~- 142 (1397)
|+++|+..+.++.. ....+|+.+||+|+|++||++.||++|+|++|+|+++|++||++++||||||++++|||++.+.
T Consensus 170 l~~~Ai~~v~~~~~~~~~~~d~~~~I~i~ki~Gg~~~dS~lv~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~~~~~~~ 249 (525)
T TIGR02344 170 LALDAVRTVKRDLGNGRKEIDIKRYAKVEKIPGGDIEDSCVLKGVMINKDVTHPKMRRYIENPRIVLLDCPLEYKKGESQ 249 (525)
T ss_pred HHHHHHHHhhccccCCCCccChhhceEEEEecCCChHhcCcccceEEecccCCCCCccccCCCCEEEEeccccccccccc
Confidence 99999999987642 2347898888999999999999999999999999999999999999999999999999998864
Q ss_pred ------CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcc
Q 000605 143 ------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1397)
Q Consensus 143 ------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 216 (1397)
++.++++++++|++|+++++++|.+.||+||+|+|+|+++|+++|.++||++++++++.+|+|||++|||++++
T Consensus 250 ~~i~i~~~~~~~~~l~~E~~~l~~~v~~i~~~~~~vIi~~k~I~dla~~~l~~~~I~av~~v~~~~LerIa~~tGa~ii~ 329 (525)
T TIGR02344 250 TNVEIMKEEDWNRILQMEEEYVQLMCEDIIAVKPDLVITEKGVSDLAQHYLLKANISAIRRVRKTDNNRIARACGATIVN 329 (525)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCceEEecCCHHHHHHHHHHhCCeEec
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000605 217 SIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1397)
Q Consensus 217 s~d~l~~~~LG~-c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~ 295 (1397)
+++++++..||+ |+.|+++++++ ++|++|+||+.+.+|||+|||++..+|+|+||+++||++++++
T Consensus 330 ~l~~l~~~~lG~~~~~v~~~~ig~-------------~~~~~~~g~~~~~~~TIlLrG~t~~~l~E~er~l~DAl~~vk~ 396 (525)
T TIGR02344 330 RPEELRESDVGTGCGLFEVKKIGD-------------EYFTFFTECKDPKACTILLRGASKDVLNEIERNLQDAMAVARN 396 (525)
T ss_pred chhhCCHhhcCCcCCEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEEcCCHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999 99999999976 5899999999999999999999999999999999999999999
Q ss_pred hhccCeeecCCCcccccc
Q 000605 296 LSLETSFLADEGATLPKM 313 (1397)
Q Consensus 296 ~~le~~~l~ggGa~e~~~ 313 (1397)
+++++.+||||||+|.+.
T Consensus 397 ~~~~~~vvpGGGa~e~~l 414 (525)
T TIGR02344 397 VLLEPKLLPGGGATEMAV 414 (525)
T ss_pred HHhCCCcccCCCHHHHHH
Confidence 999999999999999854
No 10
>TIGR02339 thermosome_arch thermosome, various subunits, archaeal. Thermosome is the name given to the archaeal rather than eukaryotic form of the group II chaperonin (counterpart to the group I chaperonin, GroEL/GroES, in bacterial), a torroidal, ATP-dependent molecular chaperone that assists in the folding or refolding of nascent or denatured proteins. Various homologous subunits, one to five per archaeal genome, may be designated alpha, beta, etc., but phylogenetic analysis does not show distinct alpha subunit and beta subunit lineages traceable to ancient paralogs.
Probab=100.00 E-value=6.1e-45 Score=451.26 Aligned_cols=297 Identities=23% Similarity=0.336 Sum_probs=271.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHH------------------HHHhCCCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSEL------------------LRAEGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qL------------------l~~~~i~~~sk~~~~~w~~~l~~ 64 (1397)
|++|+|||+|++++..++++|+||..|+.||.+|+...+ ++.+.+++.+|.....|.+.|++
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~v~~~~~~~L~~ia~tsl~sk~~~~~~~~~ls~ 170 (519)
T TIGR02339 91 TTAVVLAGELLEKAEDLLEQGIHPTVIIEGYRKAAEKALEIIDEIATKISPEDRDLLKKVAETSLTGKASAEVTKDKLAN 170 (519)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcccHHHHHHHHHhhhccccccchhHHHHHH
Confidence 688999999999999999999999999999999976433 33444455444321468899999
Q ss_pred HHHHHhhccCcCCCCC-CCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc--
Q 000605 65 IAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~-~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
|+++|+..+.+...++ -.+|+ ++|+|+|++||++.||++++|++|++++.+++||++++||||+|++|+|||++++
T Consensus 171 l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~vi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~~ 249 (519)
T TIGR02339 171 LVVEAVKQVAEKRGDGKYYVDL-DNIKIEKKTGGSIDDTELVEGIVVDKEPVHPGMPKRVKNAKIALLDAPLEVEKTEID 249 (519)
T ss_pred HHHHHHHHHhhhccCCCcccCH-HHeEEEEccCcChhcceeEeeEEEecCCCCCCCccccCCCcEEEEeccccccccccc
Confidence 9999999997532122 25788 8999999999999999999999999999999999999999999999999999985
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcc
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 216 (1397)
+++.++++++++|++|++++|++|++.||+||+++++|++.|+++|.++||++++++++.+|+|||++|||++++
T Consensus 250 ~~~~i~~~~~~~~~l~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~gI~~v~~v~~~~L~rIa~~tGa~ii~ 329 (519)
T TIGR02339 250 AKIRITDPDQIKKFLDQEEAMLKEMVDKIADAGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDIEKLARATGAKIVS 329 (519)
T ss_pred eEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEECCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCEEeC
Confidence 568999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHh
Q 000605 217 SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 296 (1397)
Q Consensus 217 s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~ 296 (1397)
+++++++..||+|+.|++++++. ++|++|+||..+.+|||+|||++..+|+|+||+++||+++++++
T Consensus 330 ~~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~~~~~~ 396 (519)
T TIGR02339 330 SIKEITESDLGYAGLVEERKVGD-------------DKMTFVEGCKNPKAVTILLRGGTEHVVDELERSIQDALHVVASA 396 (519)
T ss_pred chhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999986 58999999999999999999999999999999999999999999
Q ss_pred hccCeeecCCCcccccc
Q 000605 297 SLETSFLADEGATLPKM 313 (1397)
Q Consensus 297 ~le~~~l~ggGa~e~~~ 313 (1397)
+.++++|+||||+|...
T Consensus 397 ~~~~~vvpGGGa~e~~l 413 (519)
T TIGR02339 397 LEDGKVVAGGGAVEIEL 413 (519)
T ss_pred hcCCCEeeCCCHHHHHH
Confidence 99999999999999854
No 11
>KOG0364 consensus Chaperonin complex component, TCP-1 gamma subunit (CCT3) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.1e-45 Score=416.07 Aligned_cols=296 Identities=25% Similarity=0.433 Sum_probs=274.0
Q ss_pred CCcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCC------------------CCcccCChhhHHHHHH
Q 000605 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGI------------------KLGKEDSEEDWLGIIT 63 (1397)
Q Consensus 2 ~~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i------------------~~~sk~~~~~w~~~l~ 63 (1397)
-||+++||||+|..+..+.++++||..|+..|.+||-..+..+.++ ++.+|. ...|.+.+.
T Consensus 93 ttsvi~lagE~L~~~~~~l~~~~Hp~~i~ka~~~aled~~~~~~~~~~~~d~~~~~km~~vi~~~v~tk~-~~~~~~~~~ 171 (527)
T KOG0364|consen 93 TTSVIILAGEMLNVAEPFLEEGIHPTVIIKAYIKALEDNIRALDKISIPVDVKDQAKMLRVINSSVGTKF-NSRWSDLIC 171 (527)
T ss_pred ceeeeeehHHHhhhcchhhhcCcchHHHHHHHHHHHHHHHHHHHhhcccCCcccHHHHHhhhhhhhhhhh-hhhhcchhh
Confidence 3799999999999999999999999999999999997655555433 333332 269999999
Q ss_pred HHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCC
Q 000605 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~ 143 (1397)
.|+++|+..|..+ .|..+|+..|+|+.|||||.+.||++++||.+.|.+.|++|.+.|+||||.||+|||||.+.+++
T Consensus 172 ~lal~avk~V~~~--~g~e~dik~y~kveKvpgg~l~~s~vl~Gv~~nkdv~Hpkmrr~IenprivLlD~~LeykkGeSq 249 (527)
T KOG0364|consen 172 NLALDAVKTVGVE--NGREIDIKRYAKVEKVPGGLLEDSCVLKGVMINKDVTHPKMRRAIENPRIVLLDCPLEYKKGESQ 249 (527)
T ss_pred hHHHHHHHHhhhc--cCceechhhhccccccCcccccccceecceeeccccCcHHHHHHhhcCcEEEecCCccCCCCccc
Confidence 9999999999876 45579999999999999999999999999999999999999999999999999999999998753
Q ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcc
Q 000605 144 -------LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1397)
Q Consensus 144 -------~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 216 (1397)
-.++..+++-|+||++.++..|+.++||||+++|||+++|++||.++||++++++++.|..||||++||.|++
T Consensus 250 tnve~~~eed~~r~Lqieee~v~~mc~~Ii~v~pDlVitekG~sdla~hyl~k~~iT~~rr~rKtDn~ria~acga~iv~ 329 (527)
T KOG0364|consen 250 TNVEIVKEEDFTRILQIEEEQVQAMCEVIIAVKPDLVITEKGVSDLAQHYLLKANITAIRRLRKTDNNRIARACGARIVN 329 (527)
T ss_pred cceeeeechhHHHHHHhhHHHHHHHHHHHHeecccEEEeccchhHHHHHHHHhcCchhhhhhhccccchhhhhcCceecc
Confidence 5677888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccCCCCCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000605 217 SIDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1397)
Q Consensus 217 s~d~l~~~~LG~-c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~ 295 (1397)
..++|.+...|+ |++|++++++++ .|.||..|..++.|||+|||++.++|+|++|.++||+.+++|
T Consensus 330 rpedl~e~dvGt~agLf~~kK~gde-------------yf~f~~~Ck~pkaCtillrg~skdil~e~ernlqda~~varn 396 (527)
T KOG0364|consen 330 RPEDLPERDVGTGAGLFEVKKIGDE-------------YFTFFTDCKEPKACTILLRGPSKDILNEVERNLQDAMGVARN 396 (527)
T ss_pred ChhhCchhccCcccceeeeeccCch-------------hhhhhhhcCCCcceEEEeccCchhHHHHHHHHhhhHHHHHHH
Confidence 999999988995 999999999985 899999999999999999999999999999999999999999
Q ss_pred hhccCeeecCCCcccccc
Q 000605 296 LSLETSFLADEGATLPKM 313 (1397)
Q Consensus 296 ~~le~~~l~ggGa~e~~~ 313 (1397)
.+.+++++|||||+|+..
T Consensus 397 ~ii~PklvPGGGAtEMAv 414 (527)
T KOG0364|consen 397 VIINPKLVPGGGATEMAV 414 (527)
T ss_pred hccCCcccCCccHHHHHH
Confidence 999999999999999853
No 12
>cd03339 TCP1_epsilon TCP-1 (CTT or eukaryotic type II) chaperonin family, epsilon subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=2.8e-44 Score=445.71 Aligned_cols=296 Identities=18% Similarity=0.257 Sum_probs=269.5
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH--------------------hCCCCcccCChhhHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA--------------------EGIKLGKEDSEEDWLGII 62 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~--------------------~~i~~~sk~~~~~w~~~l 62 (1397)
|++|+||||||++|.+|+++|+||..|+.||.+|+...+..+ +.+++++|. ...|.+.|
T Consensus 98 tt~viLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~tsl~sk~-~~~~~~~~ 176 (526)
T cd03339 98 TGVVVLAGALLEQAEKLLDRGIHPIRIADGYEQACKIAVEHLEEIADKIEFSPDNKEPLIQTAMTSLGSKI-VSRCHRQF 176 (526)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCcccHHHHHHHHHHhhcccc-hhhHHHHH
Confidence 678999999999999999999999999999999977544433 333344442 35789999
Q ss_pred HHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-
Q 000605 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 63 ~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~- 141 (1397)
++++++|+..+... .+..+|+ ++|+|+|++||++.||++++|++|+++++|+.||+.++||||+|++++|||++.+
T Consensus 177 s~i~v~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~dS~~v~Givi~~~~~~~~m~~~~~n~kI~ll~~~le~~~~~~ 253 (526)
T cd03339 177 AEIAVDAVLSVADL--ERKDVNF-ELIKVEGKVGGRLEDTKLVKGIVIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 253 (526)
T ss_pred HHHHHHHHHHHhhc--CCCccch-HHeEEEEecCcCHHHcceeeeEEEecccCCCCCCceecCCCEEEEEecccCCcccc
Confidence 99999999988642 2235676 8899999999999999999999999999999999999999999999999999874
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+++.+++.++++|++|++.++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||+++
T Consensus 254 ~~~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~~~~LerIa~~tGa~ii 333 (526)
T cd03339 254 KHKLDITSVEDYKKLQEYEQKYFREMVEQVKDAGANLVICQWGFDDEANHLLLQNGLPAVRWVGGVEIELIAIATGGRIV 333 (526)
T ss_pred ceEEEeCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEeCCCCCHHHHHHHHHCCCEEEEeCCHHHHHHHHHHhCCEEe
Confidence 45789999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000605 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1397)
Q Consensus 216 ~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~ 295 (1397)
++++++++..||+|+.|+++.++.+ .++|+||+||+.+.+|||+|||+|..+|+|+||+++||++++++
T Consensus 334 ~~l~~l~~~~LG~~~~v~~~~ig~~-----------~~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~~~~ 402 (526)
T cd03339 334 PRFEDLSPEKLGKAGLVREISFGTT-----------KDKMLVIEGCPNSKAVTIFIRGGNKMIIEEAKRSLHDALCVVRN 402 (526)
T ss_pred cchhhCChhhcccCceEEEEEecCC-----------CcEEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998752 26899999999999999999999999999999999999999999
Q ss_pred hhccCeeecCCCcccccc
Q 000605 296 LSLETSFLADEGATLPKM 313 (1397)
Q Consensus 296 ~~le~~~l~ggGa~e~~~ 313 (1397)
++.++++||||||+|...
T Consensus 403 ~~~~~~vvpGGGa~e~~l 420 (526)
T cd03339 403 LIRDNRIVYGGGAAEISC 420 (526)
T ss_pred HhhCCCEEeCCCHHHHHH
Confidence 999999999999999854
No 13
>cd03343 cpn60 cpn60 chaperonin family. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. Archaeal cpn60 (thermosome), together with TF55 from thermophilic bacteria and the eukaryotic cytosol chaperonin (CTT), belong to the type II group of chaperonins. Cpn60 consists of two stacked octameric rings, which are composed of one or two different subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=8.1e-44 Score=441.56 Aligned_cols=296 Identities=22% Similarity=0.330 Sum_probs=270.8
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH------------------hCCCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~l~~ 64 (1397)
|++++|||+|++++..++++|+||..|+.||++|+...+..+ +.+++.+|.. ..|.+.|++
T Consensus 90 tt~viLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~l~~va~ts~~sk~~-~~~~~~l~~ 168 (517)
T cd03343 90 TTAVVLAGELLEKAEDLLDQNIHPTVIIEGYRLAAEKALELLDEIAIKVDPDDKDTLRKIAKTSLTGKGA-EAAKDKLAD 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhhcccch-hhHHHHHHH
Confidence 678999999999999999999999999999999976544443 3344444432 468899999
Q ss_pred HHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc---
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~--- 141 (1397)
|+++|+..+.++......+|+ ++|+|+|++||+++||++++|++|++++.|+.||+.++||||++++++|||++.+
T Consensus 169 l~~~A~~~v~~~~~~~~~~~~-~~I~i~k~~Ggs~~ds~lv~G~v~~~~~~~~~m~~~~~n~~Illl~~~Le~~k~~~~~ 247 (517)
T cd03343 169 LVVDAVLQVAEKRDGKYVVDL-DNIKIEKKTGGSVDDTELIRGIVIDKEVVHPGMPKRVENAKIALLDAPLEVKKTEIDA 247 (517)
T ss_pred HHHHHHHHhhhccCCCccccH-HHeeEEeecCcCHHHcceeeeEEEeccCCCCCCccccCCCcEEEEeccccCCccccce
Confidence 999999999754212236888 8999999999999999999999999999999999999999999999999999986
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccc
Q 000605 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s 217 (1397)
++..++++++++|++|+++++++|++.||+||+++++|++.|++||.++||++++++++.+|+|||++|||+++++
T Consensus 248 ~~~i~s~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~I~~~al~~l~~~gI~~v~~v~~~~l~~Ia~~tGa~ii~~ 327 (517)
T cd03343 248 KIRITSPDQLQAFLEQEEAMLKEMVDKIADTGANVVFCQKGIDDLAQHYLAKAGILAVRRVKKSDMEKLARATGAKIVTN 327 (517)
T ss_pred eEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCccHHHHHHHhHCCcEEEEeCCHHHHHHHHHHhCCEEecc
Confidence 5688999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhh
Q 000605 218 IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1397)
Q Consensus 218 ~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~ 297 (1397)
++++++..||+|+.|+++++++ ++|++|+||..+.+|||+|||++..+++|+||+++||++++++++
T Consensus 328 ~~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~e~~~~l~Dal~~~~~~~ 394 (517)
T cd03343 328 IDDLTPEDLGEAELVEERKVGD-------------DKMVFVEGCKNPKAVTILLRGGTEHVVDELERALEDALRVVADAL 394 (517)
T ss_pred hhhCChhhCCccceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999986 489999999999999999999999999999999999999999999
Q ss_pred ccCeeecCCCcccccc
Q 000605 298 LETSFLADEGATLPKM 313 (1397)
Q Consensus 298 le~~~l~ggGa~e~~~ 313 (1397)
.++++|||||++|...
T Consensus 395 ~~~~vvpGGG~~e~~l 410 (517)
T cd03343 395 EDGKVVAGGGAVEIEL 410 (517)
T ss_pred hCCCeeeCCCHHHHHH
Confidence 9999999999999854
No 14
>PTZ00212 T-complex protein 1 subunit beta; Provisional
Probab=100.00 E-value=2.6e-43 Score=437.07 Aligned_cols=289 Identities=20% Similarity=0.282 Sum_probs=265.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCC---------------------CCcccCChhhHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGI---------------------KLGKEDSEEDWLGI 61 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i---------------------~~~sk~~~~~w~~~ 61 (1397)
|++|+||||||++|.+|+++|+||..|+.||++|+...+..+..+ ++++|. ...|.+.
T Consensus 102 TtvvvLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~t~l~sk~-~~~~~~~ 180 (533)
T PTZ00212 102 TSVVVLAGELLREAEKLLDQKIHPQTIIEGWRMALDVARKALEEIAFDHGSDEEKFKEDLLNIARTTLSSKL-LTVEKDH 180 (533)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhCcCCCccchhhHHHHHHHHHHHhcccc-cchhHHH
Confidence 688999999999999999999999999999999987654444333 334443 2468999
Q ss_pred HHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc
Q 000605 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1397)
Q Consensus 62 l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~ 141 (1397)
|++++++|+..+.. ..|+ ++|+|+|++||++.||++++|+|+++++.+ .||++++||||||++++|||++.+
T Consensus 181 l~~i~~~av~~i~~------~~~~-~~I~i~ki~Ggsi~ds~lv~G~v~~~~~~~-~~~~~i~n~kIll~~~~Le~~k~~ 252 (533)
T PTZ00212 181 FAKLAVDAVLRLKG------SGNL-DYIQIIKKPGGTLRDSYLEDGFILEKKIGV-GQPKRLENCKILVANTPMDTDKIK 252 (533)
T ss_pred HHHHHHHHHHHHhc------cCCc-cceEEEEecCcCccccEEEEeEEEecccCC-CCCccccCCcEEEEeCCCCCCccc
Confidence 99999999999864 3566 789999999999999999999999999987 589999999999999999999986
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000605 142 --------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1397)
Q Consensus 142 --------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~ 213 (1397)
+++.++..+.++|++++++++.+|++.||++|+++++|++.|+++|.++||++++++++.+|+|||++|||+
T Consensus 253 ~~~~~~~i~~~~~~~~l~~~E~~~i~~~v~~Ii~~gv~vvv~~~~I~d~a~~~L~~~~I~avr~v~~~~l~rIa~~tGa~ 332 (533)
T PTZ00212 253 IYGAKVKVDSMEKVAEIEAAEKEKMKNKVDKILAHGCNVFINRQLIYNYPEQLFAEAGIMAIEHADFDGMERLAAALGAE 332 (533)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCCEEEecCCHHHHHHHHHHhCCE
Confidence 578889999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHH
Q 000605 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1397)
Q Consensus 214 Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~ 293 (1397)
++++++.+++..||+|+.|+++.+++ ++|++|+||..+.+|||+|||+|..+|+|+||.++||++++
T Consensus 333 iis~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~vv 399 (533)
T PTZ00212 333 IVSTFDTPEKVKLGHCDLIEEIMIGE-------------DKLIRFSGCAKGEACTIVLRGASTHILDEAERSLHDALCVL 399 (533)
T ss_pred EeecCCCCCHHHccCCceEEEEEECC-------------eEEEEEEccCCCCEEEEEEECCChhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988875 58999999999999999999999999999999999999999
Q ss_pred HHhhccCeeecCCCcccccc
Q 000605 294 YHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 294 ~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++.++++|+||||+|...
T Consensus 400 ~~~i~~~~vVpGGGa~e~~l 419 (533)
T PTZ00212 400 SQTVKDTRVVLGGGCSEMLM 419 (533)
T ss_pred HHHhhCCCEeeCCCHHHHHH
Confidence 99999999999999999854
No 15
>cd03335 TCP1_alpha TCP-1 (CTT or eukaryotic type II) chaperonin family, alpha subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=5.4e-43 Score=434.37 Aligned_cols=296 Identities=18% Similarity=0.211 Sum_probs=265.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhC-C--CC----------------cccCChhhHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG-I--KL----------------GKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~-i--~~----------------~sk~~~~~w~~~l~ 63 (1397)
|++|+|||+||++|.+++++|+||..|+.||.+|+...+..+.+ . ++ .+|. ...|.+.|+
T Consensus 83 Tt~vvLa~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~ls 161 (527)
T cd03335 83 TSVVIIAAELLKRANELVKQKIHPTTIISGYRLACKEAVKYIKEHLSISVDNLGKESLINVAKTSMSSKI-IGADSDFFA 161 (527)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCccCHHHHHHHHHHHhcccc-cchhHHHHH
Confidence 68899999999999999999999999999999998765555542 2 22 2221 125789999
Q ss_pred HHHHHHhhccCc-CCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-
Q 000605 64 TIAWQAANFVKP-DTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 64 ~l~~~a~~~v~~-~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~- 141 (1397)
+|+++|+..++. +......+|+ ++|+|++++||++.||++++|++|++++++++||++++|||||+++|+|++.+.+
T Consensus 162 ~l~~~A~~~v~~~~~~~~~~~~~-~~I~i~~~~Ggs~~~s~li~Givi~~~~~~~~m~~~i~n~kIlll~~~Le~~~~~~ 240 (527)
T cd03335 162 NMVVDAILAVKTTNEKGKTKYPI-KAVNILKAHGKSAKESYLVNGYALNCTRASQGMPTRVKNAKIACLDFNLQKTKMKL 240 (527)
T ss_pred HHHHHHHHHhhcccccCCCccCH-HHeEEEEecCcChhhcceeeeEEEecccCCCCCcccccCCcEEEEeccCCCCcccc
Confidence 999999999953 2111124788 8899999999999999999999999999999999999999999999999998875
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+++.+++.+.++|++++++++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||+++
T Consensus 241 ~~~~~~~~~~~le~~~~~E~~~l~~~i~~i~~~g~~lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~lerIa~~tGa~ii 320 (527)
T cd03335 241 GVQVVVTDPEKLEKIRQRESDITKERIKKILAAGANVVLTTGGIDDMCLKYFVEAGAMAVRRVKKEDLRRIAKATGATLV 320 (527)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHhCCEEe
Confidence 56799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCC------CCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000605 216 PSIDNIS------TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289 (1397)
Q Consensus 216 ~s~d~l~------~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~ 289 (1397)
++++.++ +..||+|+.|+++++++ ++|++|+||..+.+|||+|||+|..+|+|+||+++||
T Consensus 321 ~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~e~er~i~Da 387 (527)
T cd03335 321 STLANLEGEETFDPSYLGEAEEVVQERIGD-------------DELILIKGTKKRSSASIILRGANDFMLDEMERSLHDA 387 (527)
T ss_pred cChhhcCcccccCHhhCccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 9997653 34799999999999986 5899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCeeecCCCcccccc
Q 000605 290 VFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 290 l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++++++.++++|+||||+|...
T Consensus 388 l~~~~~~~~~~~vvpGGGa~e~~l 411 (527)
T cd03335 388 LCVVKRTLESNSVVPGGGAVETAL 411 (527)
T ss_pred HHHHHHHhhCCCEeeCCCHHHHHH
Confidence 999999999999999999999854
No 16
>TIGR02343 chap_CCT_epsi T-complex protein 1, epsilon subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT epsilon chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=6.4e-43 Score=433.19 Aligned_cols=296 Identities=19% Similarity=0.263 Sum_probs=269.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH--------------------hCCCCcccCChhhHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA--------------------EGIKLGKEDSEEDWLGII 62 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~--------------------~~i~~~sk~~~~~w~~~l 62 (1397)
|++++||||||++|.+|++.|+||..|+.||..|+...+..+ +.+++.+|. ...|.+.|
T Consensus 102 ttvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~ia~t~l~sK~-~~~~~~~l 180 (532)
T TIGR02343 102 TGVVVLAGALLEQAEALLDKGIHPIKIAEGFEVAARVAVEHLEEISEEISDDNNNKEPLIQAAKTSLGSKI-VSKCHRRF 180 (532)
T ss_pred ccHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhccccCcCCCCHHHHHHHHHHhhccch-hhHHHHHH
Confidence 688999999999999999999999999999999976544433 333333332 24689999
Q ss_pred HHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-
Q 000605 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 63 ~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~- 141 (1397)
++++++|+..+... ....+|+ ++|+|+|++||++.||++++|++|++++.|+.||+.++||||+|++++||+++.+
T Consensus 181 s~i~~~av~~i~~~--~~~~~d~-~~I~i~ki~Ggs~~ds~~v~Gi~i~~~~~~~~m~~~~~n~kI~l~~~~le~~~~~~ 257 (532)
T TIGR02343 181 AEIAVDAVLMVADM--ERRDVDF-DLIKVEGKVGGSLEDTKLIKGIIIDKDFSHPQMPKEVKDAKIAILTCPFEPPKPKT 257 (532)
T ss_pred HHHHHHHHHhhhhc--CCCcCCH-HHeeEEEecCCCcccceeEeeEEEecCcCCCCCCeeecCCcEEEEEeecccccccc
Confidence 99999999988542 2236888 8999999999999999999999999999999999999999999999999999874
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+++.+++.++++|+++++.++++|++.|++||+++++|++.|++||.++||.++++++..+|+|||++|||.++
T Consensus 258 ~~~~~i~~~~~~~~~~~~E~~~l~~~l~~i~~~g~~lvi~~~~I~~~al~~L~~~~i~~v~~~~~~~l~~Ia~~tGa~~i 337 (532)
T TIGR02343 258 KHKLDISSVEEYKKLQKYEQQKFAEMIDDIKKSGANIVICQWGFDDEANHLLLQNDLPAVRWVGGHELELIAIATGGRIV 337 (532)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCccHHHHHHHHHCCcEEEEcCCHHHHHHHHHHhCCEEe
Confidence 45788999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000605 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1397)
Q Consensus 216 ~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~ 295 (1397)
++++++++..||+|+.|+++.++.+ .+++++|+||+.+..|||+|||+|+.+|+|+||+++||++++++
T Consensus 338 ~~l~~~~~~~LG~a~~v~~~~ig~~-----------~~~~~~i~~~~~~~~~TIllrG~t~~~l~E~er~l~DAl~~v~~ 406 (532)
T TIGR02343 338 PRFEELSEDKLGKAGLVREISFGTT-----------KDRMLVIEQCKNSKAVTIFIRGGNKMIIEEAKRSIHDALCVVRN 406 (532)
T ss_pred cccccCCHhHCcccceEEEEEecCC-----------cceEEEEECCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999762 24899999999999999999999999999999999999999999
Q ss_pred hhccCeeecCCCcccccc
Q 000605 296 LSLETSFLADEGATLPKM 313 (1397)
Q Consensus 296 ~~le~~~l~ggGa~e~~~ 313 (1397)
++.++.+||||||+|++.
T Consensus 407 ~i~~~~vvpGGGa~e~~l 424 (532)
T TIGR02343 407 LIKNSRIVYGGGAAEISC 424 (532)
T ss_pred HHhCCCEEeCcCHHHHHH
Confidence 999999999999999854
No 17
>cd03336 TCP1_beta TCP-1 (CTT or eukaryotic type II) chaperonin family, beta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-42 Score=429.18 Aligned_cols=289 Identities=18% Similarity=0.229 Sum_probs=264.6
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCC---------------------CCcccCChhhHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGI---------------------KLGKEDSEEDWLGI 61 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i---------------------~~~sk~~~~~w~~~ 61 (1397)
|++|+||||||++|.+|+++|+||..|+.||.+|+...+..+.+. ++++|. ...|.+.
T Consensus 90 TtvvvLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~l~~ia~t~lssk~-~~~~~~~ 168 (517)
T cd03336 90 TSVTVLAAELLREAEKLVAQKIHPQTIIEGYRMATAAAREALLSSAVDHSSDEEAFREDLLNIARTTLSSKI-LTQDKEH 168 (517)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcccccchhHHHHHHHHHhhccccc-cchhHHH
Confidence 688999999999999999999999999999999986544444332 333332 1358899
Q ss_pred HHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc
Q 000605 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1397)
Q Consensus 62 l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~ 141 (1397)
|++|+++|+..+.. ..|+ ++|+|++++||++.||++++|+|+++++.+ .||++++||||++++++|||++.+
T Consensus 169 l~~l~~~A~~~v~~------~~~~-~~i~i~ki~G~s~~ds~l~~G~v~~~~~~~-~~~~~~~n~kIli~~~~le~~~~~ 240 (517)
T cd03336 169 FAELAVDAVLRLKG------SGNL-DAIQIIKKLGGSLKDSYLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKIK 240 (517)
T ss_pred HHHHHHHHHHHhhc------cCCc-cceeEEEccCCCccceEEEeeEEEecccCC-CCCCeeccccEEEEecCCCccccc
Confidence 99999999999853 4566 789999999999999999999999999876 589999999999999999999886
Q ss_pred C--------CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000605 142 N--------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1397)
Q Consensus 142 ~--------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~ 213 (1397)
. ++.+++.+.++|++++++++.+|++.|+++|+++++|++.|++||.++||++++++++.+|+|||++|||+
T Consensus 241 ~~~~~~~~~~~~~~~~l~~~E~~~~~~~v~~I~~~gv~~v~~~~~I~~~~~~~l~~~~I~av~~v~~~~L~rIa~~tGa~ 320 (517)
T cd03336 241 IFGAKVRVDSTAKVAEIEEAEKEKMKNKVEKILKHGINCFINRQLIYNYPEQLFADAGIMAIEHADFDGVERLALVTGGE 320 (517)
T ss_pred ccCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 3 78999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHH
Q 000605 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1397)
Q Consensus 214 Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~ 293 (1397)
++++++++++..||+|+.|++..+++ ++|++|+||+.+.+|||+|||+|..+|+|+||+++||++++
T Consensus 321 ii~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~Dal~~~ 387 (517)
T cd03336 321 IASTFDHPELVKLGTCKLIEEIMIGE-------------DKLIRFSGVAAGEACTIVLRGASQQILDEAERSLHDALCVL 387 (517)
T ss_pred EecccCCCCcccccccceEEEEEECC-------------eEEEEEEccCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988875 58999999999999999999999999999999999999999
Q ss_pred HHhhccCeeecCCCcccccc
Q 000605 294 YHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 294 ~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++.++.+||||||+|..+
T Consensus 388 ~~~i~~~~vvpGGGa~e~~l 407 (517)
T cd03336 388 AQTVKDTRVVLGGGCSEMLM 407 (517)
T ss_pred HHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999854
No 18
>cd03340 TCP1_eta TCP-1 (CTT or eukaryotic type II) chaperonin family, eta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.7e-42 Score=429.70 Aligned_cols=290 Identities=21% Similarity=0.334 Sum_probs=264.6
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCC----------------------CcccCChhhHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK----------------------LGKEDSEEDWLG 60 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~----------------------~~sk~~~~~w~~ 60 (1397)
|++|+||||||+++.+++++|+||..|+.||.+|+...+..+..++ +.+|.. ..|.+
T Consensus 91 tt~viL~~~ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~~l~~ia~t~l~sK~~-~~~~~ 169 (522)
T cd03340 91 TSVVVLAGEFLKEAKPFIEDGVHPQIIIRGYRKALQLAIEKIKEIAVNIDKEDKEEQRELLEKCAATALNSKLI-ASEKE 169 (522)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhcccCcccccccHHHHHHHHHHHhccCcc-hhHHH
Confidence 6789999999999999999999999999999999876555444433 222221 35789
Q ss_pred HHHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCC---CcceecCccEEEEeeeccc
Q 000605 61 IITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR---MTSQYRNPRLLILGGALEY 137 (1397)
Q Consensus 61 ~l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~---Mp~~i~nprIlll~~~Ley 137 (1397)
.|++|+++|+..+.+ ..|+ ++|+|++++||++.||++++|++|+++++++. ||++++|||||+++++||+
T Consensus 170 ~l~~l~~~A~~~v~~------~~~~-~~I~i~~i~Ggs~~ds~lv~Giv~~k~~~~~~~~~~~~~~~n~kIll~~~~Le~ 242 (522)
T cd03340 170 FFAKMVVDAVLSLDD------DLDL-DMIGIKKVPGGSLEDSQLVNGVAFKKTFSYAGFEQQPKKFKNPKILLLNVELEL 242 (522)
T ss_pred HHHHHHHHHHHHhcc------cCCh-hHheEeeecCCChhhceeeeeEEEecccCccccccCCccccCCeEEEEeCCCCC
Confidence 999999999999965 2466 89999999999999999999999999999654 6999999999999999999
Q ss_pred ccCc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHh
Q 000605 138 QRVP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCT 210 (1397)
Q Consensus 138 ~r~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~T 210 (1397)
.+.+ +++..++.++++|++++.+++++|++.|++||+++++|++.|++||.++||+++.+|++.+|+|||++|
T Consensus 243 ~~~~~~~~i~i~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~vvl~~~~i~d~a~~~l~~~~I~~~~~v~~~~l~rIa~~t 322 (522)
T cd03340 243 KAEKDNAEVRVEDPEEYQAIVDAEWKIIYDKLEKIVKSGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLKRVAQAT 322 (522)
T ss_pred CccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCcHHHHHHHHHCCcEEEEeCCHHHHHHHHHHH
Confidence 9863 567889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 211 GALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 211 gA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
||+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||++..+|+|+||+++||+
T Consensus 323 Ga~ii~~l~~l~~~~LG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal 389 (522)
T cd03340 323 GGSIQTTVSNITDDVLGTCGLFEERQVGG-------------ERYNIFTGCPKAKTCTIILRGGAEQFIEEAERSLHDAI 389 (522)
T ss_pred CCEEeeccccCCccccccceEEEEEEECC-------------EEEEEEECCCCCceEEEEEECCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999998865 58999999999999999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCcccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
+++++++.++.+|+||||+|..+
T Consensus 390 ~~~~~~i~~~~vvpGGG~~E~~l 412 (522)
T cd03340 390 MIVRRAIKNDSVVAGGGAIEMEL 412 (522)
T ss_pred HHHHHHhcCCCEEECcCHHHHHH
Confidence 99999999999999999999854
No 19
>TIGR02342 chap_CCT_delta T-complex protein 1, delta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT delta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.5e-42 Score=425.93 Aligned_cols=295 Identities=18% Similarity=0.226 Sum_probs=268.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH------------------hCCCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~l~~ 64 (1397)
|++|+||||||++|.+|+++|+||..|+.||.+|+...+..+ +.+++.+|. ...|.+.|++
T Consensus 84 tt~viLa~~Ll~~a~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ls~ 162 (517)
T TIGR02342 84 TSVVILAGALLGACETLLERGIHPTTISESFQIAADEAIKILDEMSIPVDLSDREILIKSATTSLSSKV-VSQYSSLLAP 162 (517)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCccCHHHHHHHHHHHhcccc-chhHHHHHHH
Confidence 688999999999999999999999999999999987544443 334444442 3579999999
Q ss_pred HHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCC-CCCcceecCccEEEEeeecccccCc--
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKH-KRMTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~-k~Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
|+++|+..+.++. .++.+|+ +.|+|+|++||++.||++++|++|++++.+ ++||++++||||++++|+|++.+.+
T Consensus 163 l~~~a~~~v~~~~-~~~~~~~-~~i~i~k~~Ggs~~ds~li~Givl~k~~~~~~~mpk~i~n~kI~ll~~~Le~~~~~~~ 240 (517)
T TIGR02342 163 LAVDAVLKVIDPE-NDKNVDL-NDIKVVKKLGGTIDDTELIEGLVFTQKASRSAGGPTRIEKAKIGLIQFQISPPKTDME 240 (517)
T ss_pred HHHHHHHHHhccc-cCCccCH-HHeeEEeccCCChhhcEEEeeEEEeccccccCCCCccccCCcEEEEecCCCCCccccc
Confidence 9999999997532 2346887 899999999999999999999999999999 5999999999999999999998764
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHhC
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~V-----s~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tg 211 (1397)
.++.+++.++++|+++++.++++|++.|++||+|+++| +++|+++|.++||++++++++.+|+|||++||
T Consensus 241 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~i~~~g~~lvi~~~~I~~~~l~~l~~~~l~~~~I~av~~v~~~~LerIa~~tG 320 (517)
T TIGR02342 241 NQVIVNDYAQMDRVLKEERKYILNIVKKIKKTGCNVLLIQKSILRDAVNDLALHFLAKMKIMVVKDIEREEVEFICKTIG 320 (517)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHhhCCceEEecCCHHHHHHHHHHHC
Confidence 46889999999999999999999999999999999998 99999999999999999999999999999999
Q ss_pred CeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-ceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR-LGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 212 A~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~-~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
|+++++++++++..||+|+.|+++++++ ++|++|++|+.+ ..|||+|||+|+.+++|+||+++||+
T Consensus 321 a~ii~~~~~l~~~~LG~~~~v~~~~~~~-------------~~~~~i~~~~~~~~~~tIllrG~t~~~l~E~er~i~DAl 387 (517)
T TIGR02342 321 CKPIASIDHFTADKLGSAELVEEVTTDG-------------GKIIKITGIQNAGKTVTVLLRGSNKLVIDEAERSLHDAL 387 (517)
T ss_pred CEEEcchhhcCcccCcCCceEEEEEECC-------------eEEEEEEccCCCCceEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999888875 489999999884 89999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCcccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
+++++++.++.+||||||+|.+.
T Consensus 388 ~~v~~~~~~~~~VpGGGa~e~~l 410 (517)
T TIGR02342 388 CVIRSLVKKRGLIPGGGAPEIEI 410 (517)
T ss_pred HHHHHHhhCCCEEECcCHHHHHH
Confidence 99999999999999999999854
No 20
>TIGR02347 chap_CCT_zeta T-complex protein 1, zeta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT zeta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=4.1e-42 Score=425.16 Aligned_cols=293 Identities=21% Similarity=0.277 Sum_probs=267.1
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCC-------------------CcccCChhhHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK-------------------LGKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~-------------------~~sk~~~~~w~~~l~ 63 (1397)
|++|+||||||++|.+|+++|+||..|+.||.+|+...+..+.+.+ +.+|. ...|.+.|+
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~ia~tsl~sK~-~~~~~~~ls 169 (531)
T TIGR02347 91 TSTVILIGELLKQAERYILEGIHPRILTEGFEIARGELLEFLDKFKIKTEDEVDRELLLNVARTSLRTKL-PIDLADQLT 169 (531)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 6789999999999999999999999999999999876555554443 22222 136789999
Q ss_pred HHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc--
Q 000605 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
+++++|+..+.++ +..+|+ +.|+|+|++||+..||++++|++|++++.++.||+++.||||++++++||+.+++
T Consensus 170 ~iv~~Av~~v~~~---~~~i~~-~~I~i~k~~g~s~~ds~~v~Giv~~~~~~~~~~~~~~~n~~Ill~~~~le~~~~~~~ 245 (531)
T TIGR02347 170 EIVVDAVLAIKKD---GEQIDL-FMVEIMEMKHKSATDTTLIRGLVLDHGARHPDMPRRVKNAYILTCNVSLEYEKTEVN 245 (531)
T ss_pred HHHHHHHHHHhhc---CCCCCh-hHeEEEEecCCCccccEEEeeEEEecCcCCCCCceeccCceEEEEeCCCCCCccccC
Confidence 9999999999763 224777 7799999999999999999999999999999999999999999999999999864
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcC-------Cc---EEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHH
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALR-------PN---VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERI 206 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~-------pn---VVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerI 206 (1397)
.+..+++.++.+|++|+++++++|++++ |+ ||+|+++|++.|++||.++||++++++++.+|+||
T Consensus 246 ~~~~~~~~~~~~~~~~~E~~~l~~~v~~I~~~~~~~~~~~~~~~~lvi~~k~I~~~a~~~L~~~~I~~i~rv~~~~le~i 325 (531)
T TIGR02347 246 SGFFYSNAEQREKLVEAERKFVDDRVKKIIELKKKVCGKSPDKGFVVINQKGIDPPSLDLLAKEGIMALRRAKRRNMERL 325 (531)
T ss_pred ceEEEcCHHHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccEEEEeCCCccHHHHHHHHHCCceEEccCCHHHHHHH
Confidence 5688999999999999999999999977 36 99999999999999999999999999999999999
Q ss_pred HHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHH
Q 000605 207 ARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVV 286 (1397)
Q Consensus 207 ar~TgA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l 286 (1397)
|++|||+++++++++++..||+|+.|+++.+++ ++|++|+||..+..|||+|||+|+.+|+|+||++
T Consensus 326 a~~tGa~~i~~l~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TI~lrG~t~~~l~E~er~l 392 (531)
T TIGR02347 326 TLACGGEALNSVEDLTPECLGWAGLVYETSIGE-------------EKYTFIEEVKNPKSCTILIKGPNDHTIKQIKDAV 392 (531)
T ss_pred HHHhCCEEecccccCCccccccceEEEEEEECC-------------eEEEEEEcCCCCCeEEEEEeCCCHHHHHHHHHHH
Confidence 999999999999999999999999999999976 4899999999999999999999999999999999
Q ss_pred HHHHHHHHHhhccCeeecCCCcccccc
Q 000605 287 QYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 287 ~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
+||++++++++.++++||||||+|.+.
T Consensus 393 ~DAl~v~~~~~~~~~vvpGGGa~E~~l 419 (531)
T TIGR02347 393 RDGLRAVKNAIEDKCVVPGAGAFEIAA 419 (531)
T ss_pred HHHHHHHHHHhhCCcEEeCCCHHHHHH
Confidence 999999999999999999999999854
No 21
>cd03338 TCP1_delta TCP-1 (CTT or eukaryotic type II) chaperonin family, delta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.5e-41 Score=420.80 Aligned_cols=295 Identities=17% Similarity=0.234 Sum_probs=268.3
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCC------------------cccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL------------------GKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~------------------~sk~~~~~w~~~l~~ 64 (1397)
|++++|||+|++++.++++.|+||..|+.||.+|+...+..+.+.+. .+|. ...|.+.|++
T Consensus 83 tt~vvLa~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~a~~v~~~~~~~l~~va~ts~~sK~-~~~~~~~ls~ 161 (515)
T cd03338 83 TSVVVLAGALLSACESLLKKGIHPTVISESFQIAAKKAVEILDSMSIPVDLNDRESLIKSATTSLNSKV-VSQYSSLLAP 161 (515)
T ss_pred chHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHhcccc-chhhHHHHHH
Confidence 67899999999999999999999999999999998765555544332 2222 1358899999
Q ss_pred HHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCC-CcceecCccEEEEeeecccccCc--
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-MTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~-Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
|+++|+..|.++. .++.+|+ +.|+|.+++||++.||++++|++|++++.++. ||+.++||||++++|||||.+.+
T Consensus 162 li~~A~~~v~~~~-~~~~~d~-~~i~i~~~~Ggs~~ds~lv~Giv~~k~~~~~~~~p~~i~n~ki~ll~~~le~~~~~~~ 239 (515)
T cd03338 162 IAVDAVLKVIDPA-TATNVDL-KDIRIVKKLGGTIEDTELVDGLVFTQKASKKAGGPTRIEKAKIGLIQFCLSPPKTDMD 239 (515)
T ss_pred HHHHHHHHhhccc-ccCcCCH-HHeEEEEecCCChhhceeeeeEEEeccccCcCCCCccccCCcEEEEeccccccccccC
Confidence 9999999998642 1247898 88999999999999999999999999999986 59999999999999999998764
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHhC
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~V-----s~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tg 211 (1397)
+++.+++.++++|+++++.++++|++.|++||+|+++| +++|++||.++||++++++++.+|+|||++||
T Consensus 240 ~~~~i~~~~~~~~~~~~E~~~i~~~v~~i~~~g~~lvi~~~~i~~~~v~~l~~~~l~~~~I~av~~~~~~~LerIa~~tG 319 (515)
T cd03338 240 NNIVVNDYAQMDRILREERKYILNMCKKIKKSGCNVLLIQKSILRDAVSDLALHFLAKLKIMVVKDIEREEIEFICKTIG 319 (515)
T ss_pred ceEEeCCHHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEECCCcccccccHHHHHHHHHCCceEEecCCHHHHHHHHHHHC
Confidence 46789999999999999999999999999999999997 99999999999999999999999999999999
Q ss_pred CeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 212 A~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
|++++++++++...||+|+.|+++++++ ++|++|+||+. +.+|||+|||+|+.+++|+||+++||+
T Consensus 320 a~ii~sl~~l~~~~LG~~~~v~~~~~g~-------------~~~~~i~~~~~~~~~~TIllrG~t~~~l~e~~r~i~Dal 386 (515)
T cd03338 320 CKPVASIDHFTEDKLGSADLVEEVSLGD-------------GKIVKITGVKNPGKTVTILVRGSNKLVLDEAERSLHDAL 386 (515)
T ss_pred CEEecccccCCHhhCCCCceEEEEEECC-------------eEEEEEEecCCCCceEEEEEeCCcHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999875 48999999997 699999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCcccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
+++++++.++++|+||||+|...
T Consensus 387 ~~~~~~~~~~~vvpGGG~~e~~l 409 (515)
T cd03338 387 CVIRCLVKKRALIPGGGAPEIEI 409 (515)
T ss_pred HHHHHHhhCCCEEECCCHHHHHH
Confidence 99999999999999999999854
No 22
>TIGR02340 chap_CCT_alpha T-complex protein 1, alpha subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=2.7e-41 Score=419.73 Aligned_cols=296 Identities=18% Similarity=0.206 Sum_probs=264.9
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhC---CCC----------------cccCChhhHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG---IKL----------------GKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~---i~~----------------~sk~~~~~w~~~l~ 63 (1397)
|++|+|||+||++|.++++.|+||..|+.||..|+...+..+.. +++ ++|. ...|.+.|+
T Consensus 87 Tt~viLa~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ls 165 (536)
T TIGR02340 87 TSVVIIAAELLKRADELIKRKVHPTSIISGYRLACKEAVKYIKENLSVSVDELGREALINVAKTSMSSKI-IGLDSDFFS 165 (536)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCCcccHHHHHHHHHHHhcccc-chhhHHHHH
Confidence 68899999999999999999999999999999998755444432 222 2222 134789999
Q ss_pred HHHHHHhhccCcCCCCC-CCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-
Q 000605 64 TIAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~-~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~- 141 (1397)
+|+++|+..++.+...+ ..+|+ ++|+|+|++||+..||++++|++|++++.+.+||++++||||+|++++|++.+.+
T Consensus 166 ~l~~~A~~~v~~~~~~g~~~~~~-~~I~i~k~~G~s~~~s~~i~Gi~i~~~~~~~~m~~~~~n~kIli~~~~L~~~~~~~ 244 (536)
T TIGR02340 166 NIVVDAVLAVKMTNENGETKYPI-KAVNILKAHGGSARESYLVKGYALNCTRASQQMPKRIKKAKIACLDFNLQKQKMAL 244 (536)
T ss_pred HHHHHHHHHHhcccccCccccch-HHeEEEEecCCCccccEEEEEEEEecccCCCCCcceecCCcEEEEecCCCCCcccC
Confidence 99999999996321122 24788 8999999999999999999999999999999999999999999999999999864
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+++..++.+.++|++++.+++++|++.|++||+++++|++.|++||.++||++++|+++.+|+|||++|||+++
T Consensus 245 ~~~~~~~~~~~le~~~~~E~~~i~~~i~~I~~~g~~lvi~~k~I~~~a~~~L~k~~I~~i~rv~~~~LerIa~~tGa~ii 324 (536)
T TIGR02340 245 GVQIVVDDPAKLEGIRQREADITKERIKKILKAGANVVLTTGGIDDMCLKYFVEAGAMGVRRCKKEDLKRIAKATGGTLV 324 (536)
T ss_pred ceeEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCCEEEeCCCCcHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCEEe
Confidence 46799999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccC------CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000605 216 PSIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289 (1397)
Q Consensus 216 ~s~d~l------~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~ 289 (1397)
++++.+ ++..||+|+.|++++++. ++|++|+||..+.+|||+|||+|+.+++|+||.++||
T Consensus 325 ~~~~~l~~~~~~~~~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~TIlirG~t~~~l~E~~r~i~DA 391 (536)
T TIGR02340 325 STLADLEGEETFDASYLGFADEVVEERIAD-------------DECILIKGTKGRKSASIILRGANDFMLDEMERSLHDA 391 (536)
T ss_pred cchhhcCccccccccccccCceEEEEEECC-------------eEEEEEEcCCCCCEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 999755 345699999999999986 4899999999999999999999999999999999999
Q ss_pred HHHHHHhhccCeeecCCCcccccc
Q 000605 290 VFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 290 l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++++++.++++||||||+|...
T Consensus 392 l~~~~~~~~~~~vVpGGGa~e~~l 415 (536)
T TIGR02340 392 LCVVKRTLESNSVVPGGGAVETAL 415 (536)
T ss_pred HHHHHHHhcCCCEEECCCHHHHHH
Confidence 999999999999999999999854
No 23
>cd03337 TCP1_gamma TCP-1 (CTT or eukaryotic type II) chaperonin family, gamma subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1e-41 Score=418.19 Aligned_cols=263 Identities=25% Similarity=0.401 Sum_probs=239.5
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhC------------------CCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~------------------i~~~sk~~~~~w~~~l~~ 64 (1397)
|++|+||||||++|..++++|+||..|+.||.+|+...+..+.+ +++.+|. .+.|.+.|++
T Consensus 91 tt~vvL~~~Ll~~a~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~i~~t~l~sK~-~~~~~~~ls~ 169 (480)
T cd03337 91 TSVIILAGEILAVAEPFLERGIHPTVIIKAYRKALEDALKILEEISIPVDVNDRAQMLKIIKSCIGTKF-VSRWSDLMCN 169 (480)
T ss_pred chhHhhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccccCCHHHHHHHHHHHhccCc-chhHHHHHHH
Confidence 68899999999999999999999999999999998754444433 3344443 2579999999
Q ss_pred HHHHHhhccCcCCCCC-CCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCC
Q 000605 65 IAWQAANFVKPDTSRG-GSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~-~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~ 143 (1397)
++++|+..+.++.... ..+|+.+||+|++++||++.||++++|+||+++++|++||++++||||||++|||||
T Consensus 170 lv~~Ai~~v~~~~~~~~~~id~~~~I~i~ki~Ggs~~ds~li~Gvvi~k~~~~~~m~~~~~n~kIlll~~~Le~------ 243 (480)
T cd03337 170 LALDAVKTVAVEENGRKKEIDIKRYAKVEKIPGGEIEDSRVLDGVMLNKDVTHPKMRRRIENPRIVLLDCPLEY------ 243 (480)
T ss_pred HHHHHHHhhccccCCCCCcCChhhceEEEEecCCCHHhcccccceEEeccCCCCCCCcEecCCCEEEEecCcce------
Confidence 9999999998764222 368988899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCC
Q 000605 144 LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIST 223 (1397)
Q Consensus 144 ~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~ 223 (1397)
||+|+++|++.|+++|.++||++++++++.+|+|||++|||+++++++++++
T Consensus 244 ----------------------------lvi~~k~I~d~al~~L~~~~I~~v~~v~~~~L~rIa~~tGa~ii~~~~~l~~ 295 (480)
T cd03337 244 ----------------------------LVITEKGVSDLAQHYLVKAGITALRRVRKTDNNRIARACGATIVNRPEELTE 295 (480)
T ss_pred ----------------------------EEEeCCCccHHHHHHHHHCCcEEEEeCCHHHHHHHHHHHCCEEecchhhCCH
Confidence 9999999999999999999999999999999999999999999999999999
Q ss_pred CCcce-eeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCee
Q 000605 224 TRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSF 302 (1397)
Q Consensus 224 ~~LG~-c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~ 302 (1397)
+.||+ |+.|+++++++ ++|++|+||..+.+|||+|||++..+|+|+||+++||++++++++.++.+
T Consensus 296 ~~LG~~~~~~~~~~~~~-------------~~~~~i~~~~~~~~~TIllrG~t~~~l~e~er~l~DAl~v~~~~~~~~~~ 362 (480)
T cd03337 296 SDVGTGAGLFEVKKIGD-------------EYFTFITECKDPKACTILLRGASKDVLNEVERNLQDAMAVARNIILNPKL 362 (480)
T ss_pred HHcCCcccEEEEEEeCC-------------eEEEEEEcCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCE
Confidence 99999 67777777765 58999999999999999999999999999999999999999999999999
Q ss_pred ecCCCcccccc
Q 000605 303 LADEGATLPKM 313 (1397)
Q Consensus 303 l~ggGa~e~~~ 313 (1397)
||||||+|++.
T Consensus 363 vpGGGa~E~~l 373 (480)
T cd03337 363 VPGGGATEMAV 373 (480)
T ss_pred EeCCCHHHHHH
Confidence 99999999854
No 24
>KOG0361 consensus Chaperonin complex component, TCP-1 eta subunit (CCT7) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=4.7e-42 Score=380.35 Aligned_cols=291 Identities=19% Similarity=0.307 Sum_probs=266.6
Q ss_pred CCcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHH----------------------HHhCCCCcccCChhhHH
Q 000605 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELL----------------------RAEGIKLGKEDSEEDWL 59 (1397)
Q Consensus 2 ~~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl----------------------~~~~i~~~sk~~~~~w~ 59 (1397)
-||+|+||+|+|++++.+++.|+||.-|+.+|++|...++. +.+.+.+++|. ....+
T Consensus 94 TTSVv~la~E~lk~~Kpfiedgv~~~~iir~~rka~~l~v~ki~elav~i~~~~~~~~r~lL~KcA~T~lsSKl-I~~ek 172 (543)
T KOG0361|consen 94 TTSVVLLAAEFLKEAKPFIEDGVHPQLIIRAYRKARQLAVEKIKELAVEIDGSSKTELRELLEKCAATALSSKL-IRQEK 172 (543)
T ss_pred ceeEeeeHHHHHHhhhhHhhcCCCHHHHHHHHHHHHHHHHHHHHHheeEecccchhhHHHHHHHHHHHHhhhhh-hhhhH
Confidence 37999999999999999999999999999999998764444 44555666554 24667
Q ss_pred HHHHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCC---CcceecCccEEEEeeecc
Q 000605 60 GIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR---MTSQYRNPRLLILGGALE 136 (1397)
Q Consensus 60 ~~l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~---Mp~~i~nprIlll~~~Le 136 (1397)
++|++++|+|+..+.. ..|. +.|-|||++||++.||.+|+||.|.|.+.+.+ .|+++.|||||+|+-.||
T Consensus 173 ~fF~~MvVDAV~~ld~------~l~~-~mIGIKKV~GG~~~dS~lv~GVAFkKtFsYAGfEqqPKk~~NpkIl~LnvELE 245 (543)
T KOG0361|consen 173 EFFAKMVVDAVLTLDN------DLDL-NMIGIKKVPGGAMEDSLLVNGVAFKKTFSYAGFEQQPKKFLNPKILLLNVELE 245 (543)
T ss_pred HHHHHHHHHHHHhhcc------ccch-hhcceeecCCCccchhhhccceeeeehccccchhhCccccCCceEEEEeeeee
Confidence 9999999999998853 3455 89999999999999999999999999998764 699999999999999999
Q ss_pred cccCc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHH
Q 000605 137 YQRVP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARC 209 (1397)
Q Consensus 137 y~r~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~ 209 (1397)
..-.. .+.++++.++..|+..|.+++++|...|+||||..-.|.++|.+||++++|-++.||...||.|+..+
T Consensus 246 lKaEkdNAEiRv~~v~eyQ~iVDAEW~Ii~~KL~ki~~sGAnVVLSkLpIGD~ATQyFAdrdiFCAGRV~~eDl~Rv~~a 325 (543)
T KOG0361|consen 246 LKAEKDNAEIRVDNVEEYQAIVDAEWNIIYDKLDKIHESGANVVLSKLPIGDLATQYFADRDIFCAGRVPEEDLNRVMQA 325 (543)
T ss_pred ecccccCceeecCCHHHHHHHHhHHHHHHHHHHHHHHhcCCeEEEecccchHHHHHHhhccCceecCcCCHHHHHHHHHh
Confidence 86432 57899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHH
Q 000605 210 TGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289 (1397)
Q Consensus 210 TgA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~ 289 (1397)
+|+.|+++..++.+..||+|+.|++++++.+ +|-+|+||+..+.||++|||+-++.++|++|++|||
T Consensus 326 cGGsi~tt~~~i~~~~LG~C~~FeE~QvG~e-------------RyN~Fegcp~aktcTliLRGgaeqfieE~eRSlHDA 392 (543)
T KOG0361|consen 326 CGGSIQTTVSDIKEEVLGTCALFEERQVGGE-------------RYNLFEGCPKAKTCTLILRGGAEQFIEETERSLHDA 392 (543)
T ss_pred cCcchhhhhhhcchhhcchhhhHHHHhhcch-------------hhhhhcCCCccceeEEEEeccHHHHHHHHhhhhhhH
Confidence 9999999999999999999999999999874 799999999999999999999999999999999999
Q ss_pred HHHHHHhhccCeeecCCCcccccc
Q 000605 290 VFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 290 l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++++++++.++|+||||+|+++
T Consensus 393 ImIVrralkn~~vVaGGGaiEMEl 416 (543)
T KOG0361|consen 393 IMIVRRALKNDSVVAGGGAIEMEL 416 (543)
T ss_pred HHHHHHHhccCcEeeCCceeeehH
Confidence 999999999999999999999975
No 25
>TIGR02345 chap_CCT_eta T-complex protein 1, eta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT eta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=3.1e-41 Score=417.94 Aligned_cols=291 Identities=19% Similarity=0.303 Sum_probs=265.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCC---------------------cccCChhhHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL---------------------GKEDSEEDWLGI 61 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~---------------------~sk~~~~~w~~~ 61 (1397)
|++|+||||||++|.+++++|+||..|+.||..|+...+..+...+. .+|. ...+.+.
T Consensus 92 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~s~~~~~~~~~~~~~l~~va~tsl~sK~-~~~~~~~ 170 (522)
T TIGR02345 92 TSVVILAGELLKEAKPFIEEGVHPQLIIRCYREALMLAIEKLKEIAVTIDEVKGEQREVLEKCAATALNSKL-IAHEKEF 170 (522)
T ss_pred hhHHHHHHHHHHhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccCcCCcccccHHHHHHHHHHHhcccc-ccchHHH
Confidence 68899999999999999999999999999999998765554433332 2222 1347799
Q ss_pred HHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCC---CCcceecCccEEEEeeecccc
Q 000605 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHK---RMTSQYRNPRLLILGGALEYQ 138 (1397)
Q Consensus 62 l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k---~Mp~~i~nprIlll~~~Ley~ 138 (1397)
|++++++|+..+.++ .+|+ ++|+|++++||++.||++++|++|+++++++ .||++++||||+|++++||+.
T Consensus 171 l~~l~~~A~~~v~~~-----~~~~-~~I~i~ki~Ggs~~ds~~v~Giv~~~~~~~~~~~~~~~~~~n~kIll~~~~Le~~ 244 (522)
T TIGR02345 171 FSKMIVDAVLQLDID-----DLDL-KLIGVKKVQGGSLQDSVLVNGVAFKKTFSYAGFEQQPKKFANPKILLLNVELELK 244 (522)
T ss_pred HHHHHHHHHHHHhhc-----cCCh-hHheEEeecCCCHHhcceecceEEecccCccccccCCceeccceEEEEecCcccC
Confidence 999999999999652 4777 8999999999999999999999999998865 469999999999999999999
Q ss_pred cCc-------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhC
Q 000605 139 RVP-------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1397)
Q Consensus 139 r~~-------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tg 211 (1397)
+.+ +++..++.+++.|++++++++++|++.|++||+|+++|++.+++||.++||+++++|++.+++|||++||
T Consensus 245 ~~~~~~~i~~~~~~~~~~~~~~e~~~i~~~i~~i~~~g~~vv~~~~~i~d~~~~~L~~~~I~~~~~v~~~dl~ria~~tg 324 (522)
T TIGR02345 245 AEKDNAEIRVEDVEDYQAIVDAEWAIIFRKLEKIVESGANVVLSKLPIGDLATQYFADHNIFCAGRVSDEDLKRVVKACG 324 (522)
T ss_pred ccccceEEEECCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEeCCCccHHHHHHHHHCCcEEEecCCHHHHHHHHHHhC
Confidence 765 4688999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHH
Q 000605 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVF 291 (1397)
Q Consensus 212 A~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~ 291 (1397)
|+++++++++++..||+|+.|+++++++ ++|++|+||+.+.+|||+|||+|+.+|+|+||+++||++
T Consensus 325 a~ii~~~~~l~~~~LG~~~~ie~~~~~~-------------~r~~~~~g~~~~~~~TI~lrG~t~~~l~E~~r~i~DAl~ 391 (522)
T TIGR02345 325 GSIQSTTSDLEADVLGTCALFEERQIGS-------------ERYNYFTGCPHAKTCTIILRGGAEQFIEEAERSLHDAIM 391 (522)
T ss_pred CeEEcchhhCChhhccCCceEEEEEECC-------------eEEEEEEcCCCCceEEEEEECCCHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999988875 589999999999999999999999999999999999999
Q ss_pred HHHHhhccCeeecCCCcccccc
Q 000605 292 AAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 292 v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++++.++.+|+||||+|...
T Consensus 392 ~~~~~~~~~~vvpGGG~~e~~l 413 (522)
T TIGR02345 392 IVRRALKARKIVAGGGAIEMEL 413 (522)
T ss_pred HHHHHhcCCCEEeCCCHHHHHH
Confidence 9999999999999999999854
No 26
>TIGR02341 chap_CCT_beta T-complex protein 1, beta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT beta chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-40 Score=410.47 Aligned_cols=289 Identities=19% Similarity=0.243 Sum_probs=262.8
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCC---------------------CcccCChhhHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK---------------------LGKEDSEEDWLGI 61 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~---------------------~~sk~~~~~w~~~ 61 (1397)
|++|+||||||++|.+++++|+||..|+.||.+|+...+..+.+.+ +++|. ...|.+.
T Consensus 91 TtvvvLa~~Ll~~a~~li~~gihp~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~~L~~ia~t~l~ski-~~~~~~~ 169 (519)
T TIGR02341 91 TSVTVLAAELLREAEKLVNQKIHPQTIISGYRRATKAAQEALKKSSIDNGSDKTKFRDDLLNIARTTLSSKI-LSQHKDH 169 (519)
T ss_pred hHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhcccccCcccccHHHHHHHHHHHhhhhh-hhhHHHH
Confidence 6889999999999999999999999999999999876555443333 22232 2568999
Q ss_pred HHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc
Q 000605 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1397)
Q Consensus 62 l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~ 141 (1397)
|+.++++|+..+.. ..|+ +.|+|.|++||++.||++++|+|+++.+.+ .||++++||||++++++||+.+.+
T Consensus 170 ~s~l~~~av~~i~~------~~~~-~~i~i~k~~G~s~~~s~l~~G~v~~~~~~~-~~~~~~~n~~Ili~~~~Le~~~~~ 241 (519)
T TIGR02341 170 FAQLAVDAVLRLKG------SGNL-DAIQIIKKLGGSLNDSYLDEGFLLEKKIGV-NQPKRIENAKILIANTPMDTDKVK 241 (519)
T ss_pred HHHHHHHHHHHhcc------CCCh-hheEEEEccCCCcccceEEeeEEEeccCCC-CCceeeccccEEEEecCCCCCccc
Confidence 99999999999853 1256 569999999999999999999999999877 689999999999999999998866
Q ss_pred C--------CHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000605 142 N--------QLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1397)
Q Consensus 142 ~--------~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~ 213 (1397)
. ++..+..+.+.|++++++++.+|++.|+++|+++++|++.|++||.++||+++++++..+|+|||++|||.
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~e~~~~~~~~~~I~~~g~~~v~~~~~I~~~~~~~l~~~~I~~v~~~~~~~l~~ia~~tGa~ 321 (519)
T TIGR02341 242 VFGSRVRVDSTAKVAELEAAEKEKMKEKVEKILKHNINCFINRQLIYNYPEQLFADAGVMAIEHADFEGIERLALVTGGE 321 (519)
T ss_pred cCCceEEeCCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCcCCHHHHHHHHHCCcEEEecCCHHHHHHHHHHhCCE
Confidence 3 46778899999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHH
Q 000605 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1397)
Q Consensus 214 Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~ 293 (1397)
++++++.+++..||+|+.|+++.+++ ++|++|+||+.+..|||+|||+|..+|+|+||+++||++++
T Consensus 322 ii~~~~~~~~~~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~ 388 (519)
T TIGR02341 322 IVSTFDHPELVKLGSCDLIEEIMIGE-------------DKLLKFSGVKLGEACTIVLRGATQQILDESERSLHDALCVL 388 (519)
T ss_pred EecccccCCccccccCceEEEEEECC-------------EEEEEEEcCCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999989999999999988875 58999999999999999999999999999999999999999
Q ss_pred HHhhccCeeecCCCcccccc
Q 000605 294 YHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 294 ~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++.++.+||||||+|.+.
T Consensus 389 ~~~~~~~~vvpGGGa~e~~l 408 (519)
T TIGR02341 389 SQTVKESRTVLGGGCSEMLM 408 (519)
T ss_pred HHHHhCCCEEeCCCHHHHHH
Confidence 99999999999999999854
No 27
>KOG0358 consensus Chaperonin complex component, TCP-1 delta subunit (CCT4) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-39 Score=360.37 Aligned_cols=297 Identities=18% Similarity=0.242 Sum_probs=269.4
Q ss_pred CCcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHH------------------HHHHHhCCCCcccCChhhHHHHHH
Q 000605 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS------------------ELLRAEGIKLGKEDSEEDWLGIIT 63 (1397)
Q Consensus 2 ~~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~------------------qLl~~~~i~~~sk~~~~~w~~~l~ 63 (1397)
-||+|++||.||+.++.|+++|+||+.|+..+..|... +|.+.+.+++++|+ .+++...|+
T Consensus 100 TTsVVilaGaLL~~~~~LL~kgiHPtvIsdsfq~a~~~~v~il~~m~~~velsdre~Li~~atTsLnSKv-vSq~s~lla 178 (534)
T KOG0358|consen 100 TTSVVILAGALLEAAEKLLQKGIHPTVISDSFQSAAKKAVDILDEMSVPVELSDRESLIKSATTSLNSKV-VSQYSSLLA 178 (534)
T ss_pred ceEEEEehhhHHHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHHhcCCCcccCcHHHHHHHHHhHhhHHH-HHhhccccc
Confidence 37999999999999999999999999999999998653 46777778888876 357788899
Q ss_pred HHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc--
Q 000605 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
+++++|+..|... .+..++|+ +.|||.|..||.+.|+++|+|+||++......-|++++++||.|++|-|..+|+.
T Consensus 179 pmAVdAV~kv~dp-~~~~nvdl-kdIkivkklGgtvdDte~i~glvl~~~~~~~~gptriekAkIglIQF~iS~PKtdme 256 (534)
T KOG0358|consen 179 PMAVDAVLKVIDP-ENATNVDL-KDIKIVKKLGGTVDDTELIKGLVLTQKASKSAGPTRIEKAKIGLIQFQISPPKTDME 256 (534)
T ss_pred hHHHHHHHhccCc-ccccccch-hhhhhHHhhCCccchhhhhcceEEeeecccCCCcchhhhceeeEEEEEecCCCCCcc
Confidence 9999999987532 24456888 7899999999999999999999999998887789999999999999999999873
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCC-----cHHHHHHHHHcCcEEEEccChHHHHHHHHHhC
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSV-----SSYAQDLLLAKEISLVLNVKRPLLERIARCTG 211 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~V-----s~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tg 211 (1397)
+.+..++.+++.|+.|+.+++++|.+.|+||+|+||+| +++|++||.+.+|+|+..+.++++|.|++.+|
T Consensus 257 n~iiv~DyaqMdrilkeER~YiL~mcKkIKk~gcnvLliQKSILRdavsDLAlHfL~klkimvikdieRediefick~l~ 336 (534)
T KOG0358|consen 257 NQIIVNDYAQMDRILKEERQYILNMCKKIKKAGCNVLLIQKSILRDAVSDLALHFLAKLKIMVIKDIEREDIEFICKTLG 336 (534)
T ss_pred cceEecCHHHHHHHHHHHHHHHHHHHHHHHhcCCeEEEEeHHHHHHHHHHHHHHHHHhCcEEEEccccHhhHHHHHhhcC
Confidence 67999999999999999999999999999999999987 89999999999999999999999999999999
Q ss_pred CeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 212 ALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 212 A~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
+.++.++|++++..||+++.+++..-.. ..+++-+.|+.+ ..+|||++||++.-+|+|.+|++|||+
T Consensus 337 c~Pia~id~f~~d~Lg~adlveE~~~~G------------~gkivk~tg~~n~g~tvsil~RGsn~lvleEaeRSlhDAL 404 (534)
T KOG0358|consen 337 CKPIADIDHFTADKLGSADLVEETDSSG------------EGKIVKITGIQNAGRTVSILLRGSNKLVLEEAERSLHDAL 404 (534)
T ss_pred CeecchhhhcChhhcCcchhhhhcccCC------------CccEEEEEEeecCCCceEEEEecCchhhhHHHhhhhhhhh
Confidence 9999999999999999999887653322 137999999987 789999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCcccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
||++.+.+...+++|||+.|++.
T Consensus 405 CVirCLvk~r~li~GGGapEiei 427 (534)
T KOG0358|consen 405 CVIRCLVKKRALIAGGGAPEIEI 427 (534)
T ss_pred HHHHhhhhccceecCCCCcchHH
Confidence 99999999999999999999864
No 28
>TIGR02346 chap_CCT_theta T-complex protein 1, theta subunit. Members of this family, all eukaryotic, are part of the group II chaperonin complex called CCT (chaperonin containing TCP-1) or TRiC. The archaeal equivalent group II chaperonin is often called the thermosome. Both are somewhat related to the group I chaperonin of bacterial, GroEL/GroES. This family consists exclusively of the CCT alpha chain (part of a paralogous family) from animals, plants, fungi, and other eukaryotes.
Probab=100.00 E-value=1.7e-38 Score=393.79 Aligned_cols=291 Identities=15% Similarity=0.211 Sum_probs=261.8
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCC--------------------cccCChhhHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKL--------------------GKEDSEEDWLGII 62 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~--------------------~sk~~~~~w~~~l 62 (1397)
|++|+|||+||++|.+++++|+||..|+.||.+|+...+..+...+. ++|.. .. .+.|
T Consensus 93 Tt~vvLa~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~tsl~sK~~-~~-~~~l 170 (531)
T TIGR02346 93 NLVIVLAGELLDKAEELIRMGLHPSEIIKGYEQALKKAMEVLEELVVWEVEDVRNKKELIKALKASISSKQY-GN-EDFL 170 (531)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHhccccC-ch-HHHH
Confidence 68899999999999999999999999999999998765555544332 11111 12 7889
Q ss_pred HHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-
Q 000605 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 63 ~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~- 141 (1397)
++|+++|+..+.++. .+.+|+ +.|+|+|++||+..||++++|++|++... .||++++||||+++++||++.+.+
T Consensus 171 s~l~~~Ai~~v~~~~--~~~~~~-~~I~i~ki~G~s~~ds~li~Gi~~~~~~~--~~~k~i~n~kI~l~~~~l~~~~~~~ 245 (531)
T TIGR02346 171 AQLVAKACSTVMPKN--PENFNV-DNIRVSKIMGGSISNSEVLKGMVFNREAE--GSVKRVKNAKVAVFSCPLDTATTET 245 (531)
T ss_pred HHHHHHHHHHHhhcC--CCcCCh-hHeeEEEecCCChhhceeEeeeEEeccCC--CCceeccCCCEEEEecCcCCCcccC
Confidence 999999999997642 235788 78999999999999999999999999955 589999999999999999999875
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+++..+..+...|+++++.++++|++.|++||+++++|++.|+++|.++||.++++++..+|+|||.+|||.++
T Consensus 246 ~~~~~~~~~~~l~~~~~~e~~~i~~~l~~i~~~g~~lvi~~~~I~d~~~~~l~~~~I~av~~~~~~~l~~Ia~~tGa~ii 325 (531)
T TIGR02346 246 KGTVLIHNAEELLNYSKGEENQIEAYIKAIADSGVNVIVTGGSVGDMALHYCEKYNIMVLKIPSKFELRRLCKTVGATPL 325 (531)
T ss_pred ceEEEECCHHHHHHHHHHHHHHHHHHHHHHHHcCCcEEEECCCcCHHHHHHHHHCCcEEEecCCHHHHHHHHHHHCCEEe
Confidence 45778888999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCC-CCceeEEEeccCCHHHHHHHHHHHHHHHHHHH
Q 000605 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP-RRLGCMVLLRGKCREELKKVKHVVQYAVFAAY 294 (1397)
Q Consensus 216 ~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~-~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~ 294 (1397)
+++++++...||+|+.|+++++++ +.|.+|++|. .+..|||+|||+|+.+++|+||.++||+++++
T Consensus 326 ~~l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~i~~~~~~~~~~tI~lrG~t~~~l~E~er~i~DAl~~~k 392 (531)
T TIGR02346 326 ARLGAPQPEEIGYVDSVYVSEIGG-------------QKVTVFKQENGDSKISTIILRGSTKNLLDDIERAIDDGVNVIK 392 (531)
T ss_pred cccccCCHhHccccceEEEEEECC-------------EEEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHH
Confidence 999999989999999999999865 4799999998 57899999999999999999999999999999
Q ss_pred HhhccCeeecCCCcccccc
Q 000605 295 HLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 295 ~~~le~~~l~ggGa~e~~~ 313 (1397)
+++.++.+|+||||+|...
T Consensus 393 ~ai~~~~vVpGGG~~e~~l 411 (531)
T TIGR02346 393 ALVKDNRFLPGAGATEIEL 411 (531)
T ss_pred HHhcCCCEEECcCHHHHHH
Confidence 9999999999999999854
No 29
>KOG0363 consensus Chaperonin complex component, TCP-1 beta subunit (CCT2) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.5e-39 Score=356.69 Aligned_cols=288 Identities=19% Similarity=0.263 Sum_probs=265.6
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHH---------------------HHHHHHhCCCCcccCChhhHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALV---------------------SELLRAEGIKLGKEDSEEDWLGI 61 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~---------------------~qLl~~~~i~~~sk~~~~~w~~~ 61 (1397)
||++|||+|||++|++|+.+++||+.|+.||++|.. ..|++++.+.+++|+- ....++
T Consensus 95 TSV~vlaaeLlreAeklv~~kiHPq~Ii~GyR~A~~~a~eaL~~~s~dns~~~~kfr~DLl~iarTTL~SKiL-sq~keh 173 (527)
T KOG0363|consen 95 TSVTVLAAELLREAEKLVNQKIHPQTIISGYRMATAAALEALTKSSIDNSSDKEKFREDLLKIARTTLSSKIL-SQDKEH 173 (527)
T ss_pred eehHHHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHHHHHHhhhhccCchHHHHHHHHHHHHHHHHHHHH-HhhHHH
Confidence 799999999999999999999999999999999854 3577777788887763 466899
Q ss_pred HHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc
Q 000605 62 ITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP 141 (1397)
Q Consensus 62 l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~ 141 (1397)
|+.|+++|+..++. .-|+ +.|+|+|++||++.||.+-+|++++|.+.. ..|++++|||||+-+.+++..|..
T Consensus 174 FaelavdAV~rLkG------s~nL-~~IqIIK~~Gg~l~dSfLDeGFlL~K~igv-~qpkriena~iLIANT~mDtDKvK 245 (527)
T KOG0363|consen 174 FAELAVDAVLRLKG------STNL-EAIQIIKKLGGKLEDSFLDEGFLLDKKIGV-NQPKRIENAKILIANTPMDTDKVK 245 (527)
T ss_pred HHHHHHHHHHHhcC------CCCc-cceeeehhcCCccccccccccceeccccCC-CCcccccccceEEecCCCccccee
Confidence 99999999999875 2345 679999999999999999999999999775 579999999999999999999874
Q ss_pred --------CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000605 142 --------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1397)
Q Consensus 142 --------~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~ 213 (1397)
.....+..+-..|++.++.+|+||...|+|+.+...-|.++-.|+|..+||+.|....-.-+||++.+||+.
T Consensus 246 vfGarvrVds~~klaelE~AEkeKmK~KV~kI~~hgiN~FiNRQLiYnyPeqLf~dagi~aIEHADFdGiERLalvtGGe 325 (527)
T KOG0363|consen 246 VFGARVRVDSTAKLAELEKAEKEKMKEKVEKILKHGINVFINRQLIYNYPEQLFADAGIMAIEHADFDGIERLALVTGGE 325 (527)
T ss_pred eecceEeecchhHHHHHHHHHHHHHHHHHHHHHhcCCcEEeehhHhhcCHHHHHhhcCcceeecccchhHHHHhhcccce
Confidence 456777777889999999999999999999999999999999999999999999999999999999999999
Q ss_pred EccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHH
Q 000605 214 ITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAA 293 (1397)
Q Consensus 214 Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~ 293 (1397)
|++++|+....++|+|+.++...+|+ .+++.|.||.-.-.|||+|||++.++|+|.+|++|||+||+
T Consensus 326 I~STFd~p~~~klG~C~~IeeimiGe-------------d~li~FSGv~~GeActIVlrGat~q~LDEaeRslHDALcVL 392 (527)
T KOG0363|consen 326 IVSTFDNPELVKLGECDLIEEIMIGE-------------DKLIKFSGVKLGEACTIVLRGATQQILDEAERSLHDALCVL 392 (527)
T ss_pred eeeccCCcchhccccchhhHHHhcCc-------------cceeeecccccccceEEEEecccHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999988887 48999999998889999999999999999999999999999
Q ss_pred HHhhccCeeecCCCccccc
Q 000605 294 YHLSLETSFLADEGATLPK 312 (1397)
Q Consensus 294 ~~~~le~~~l~ggGa~e~~ 312 (1397)
-....|+.++.||||.|+-
T Consensus 393 aqtv~esrvv~GgG~sEm~ 411 (527)
T KOG0363|consen 393 AQTVKESRVVLGGGCSEML 411 (527)
T ss_pred HHHhccceeeecCCcHHHH
Confidence 9999999999999999873
No 30
>cd03342 TCP1_zeta TCP-1 (CTT or eukaryotic type II) chaperonin family, zeta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=1.1e-38 Score=391.74 Aligned_cols=271 Identities=19% Similarity=0.269 Sum_probs=243.4
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCC-------------------CCcccCChhhHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGI-------------------KLGKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i-------------------~~~sk~~~~~w~~~l~ 63 (1397)
|++++||++|+++|.++++.|+||..|+.||++|+...+..+.+. ++.+|. ...|.+.|+
T Consensus 87 Tt~vvLa~~Ll~~a~~li~~gi~P~~I~~g~~~a~~~~~~~L~~~s~~v~~~~~~~~l~~va~ts~~sk~-~~~~~~~l~ 165 (484)
T cd03342 87 TSNVLLIGELLKQAERYIQEGVHPRIITEGFELAKNKALKFLESFKVPVEIDTDRELLLSVARTSLRTKL-HADLADQLT 165 (484)
T ss_pred hhHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCCCCHHHHHHHHHHHhCccc-chhHHHHHH
Confidence 688999999999999999999999999999999987655444333 222332 246889999
Q ss_pred HHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCC
Q 000605 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQ 143 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~ 143 (1397)
+++++|+..+.++ ++.+|+ +.|+|+|++||+..||++++|++|++++.++.||++++||||++++++|++.+.+..
T Consensus 166 ~l~~~A~~~v~~~---~~~~~~-~~I~i~ki~ggs~~ds~~i~G~~~~~~~~~~~m~~~~~n~~Ill~~~~le~~~~~~~ 241 (484)
T cd03342 166 EIVVDAVLAIYKP---DEPIDL-HMVEIMQMQHKSDSDTKLIRGLVLDHGARHPDMPKRVENAYILTCNVSLEYEKTEVN 241 (484)
T ss_pred HHHHHHHHHHhhc---CCccCh-hHeEEEEecCCChhhceEEeeEEEecCCCCCCCCccccCceEEEEeCCCCCCccccC
Confidence 9999999999763 347888 889999999999999999999999999999999999999999999999999987643
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCC
Q 000605 144 LASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNIST 223 (1397)
Q Consensus 144 ~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~ 223 (1397)
.. +. .+||+++++|++.|+++|.++||++++++++.+|+|||++|||+++++++++++
T Consensus 242 ~~-~~---------------------~~lvi~~~~I~~~al~~l~~~~I~av~~~~~~~l~~ia~~tGa~ii~~l~~~~~ 299 (484)
T cd03342 242 SG-FF---------------------YSVVINQKGIDPPSLDMLAKEGILALRRAKRRNMERLTLACGGVAMNSVDDLSP 299 (484)
T ss_pred cE-EE---------------------EEEEEeCCCccHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhCCEEecccccCCh
Confidence 21 10 129999999999999999999999999999999999999999999999999999
Q ss_pred CCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeee
Q 000605 224 TRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFL 303 (1397)
Q Consensus 224 ~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l 303 (1397)
..||+|+.++++.++. ++|++|+||..+..|||+|||+|..+|+|+||+++||++++++++.++++|
T Consensus 300 ~~LG~~~~v~~~~ig~-------------~~~~~i~~~~~~~~~tI~lrg~t~~~l~E~er~l~DAl~~vk~~~~~~~~v 366 (484)
T cd03342 300 ECLGYAGLVYERTLGE-------------EKYTFIEGVKNPKSCTILIKGPNDHTITQIKDAIRDGLRAVKNAIEDKCVV 366 (484)
T ss_pred hhCcccceEEEEEECC-------------eEEEEEECCCCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHHHHhcCCcEE
Confidence 9999999999999876 489999999999999999999999999999999999999999999999999
Q ss_pred cCCCcccccc
Q 000605 304 ADEGATLPKM 313 (1397)
Q Consensus 304 ~ggGa~e~~~ 313 (1397)
|||||+|.+.
T Consensus 367 pGGGa~e~~l 376 (484)
T cd03342 367 PGAGAFEVAL 376 (484)
T ss_pred eCCCHHHHHH
Confidence 9999999854
No 31
>KOG0360 consensus Chaperonin complex component, TCP-1 alpha subunit (CCT1) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.6e-39 Score=364.76 Aligned_cols=295 Identities=19% Similarity=0.199 Sum_probs=272.3
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHH-------------------HHHHHhCCCCcccCChhhHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS-------------------ELLRAEGIKLGKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~-------------------qLl~~~~i~~~sk~~~~~w~~~l~ 63 (1397)
||+|++|+||+++|.+|+..++||+.++.||+.|+.. .|++.+.+++++|.- ..-.++|+
T Consensus 94 tsvviia~eLl~~a~~Lv~~~ihpt~ii~gyr~ac~e~~k~i~~~~~~~vd~lg~~~Lin~~ktsmsSK~i-~~ds~~f~ 172 (545)
T KOG0360|consen 94 TSVVIIAAELLKNADELVKTKIHPTRIISGYRLACIEAVKYITEGLSKPVDSLGTQILINLAKTSMSSKII-GMDSDFFT 172 (545)
T ss_pred eEEEEEEHHhhhhHHHhhcCCCcceehhhhHHHHHHHHHHHhhccceeehhhcchHHHHHHHHhhhcceec-ccchHHHH
Confidence 7899999999999999999999999999999999874 566777788888862 24468999
Q ss_pred HHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc--
Q 000605 64 TIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP-- 141 (1397)
Q Consensus 64 ~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~-- 141 (1397)
.++++|+..++--..++....+-+.|.|.|.+|++.-||.++.|+.++..++...||++|.|+||++++|.|.-.+..
T Consensus 173 ~~Vvda~l~v~~~~~~ge~~ypi~~vnILkahG~s~~eS~l~~GyaLnc~~asq~m~~~i~~~Kiacld~~Lqk~km~lG 252 (545)
T KOG0360|consen 173 EMVVDALLAVKILDINGEPHYPINSVNILKAHGKSQIESMLLPGYALNCSVASQMMPLRIKNAKIACLDFTLQKTKMKLG 252 (545)
T ss_pred HHHHHHHHHHhhcccCCceeccccceeEEecCCccchhheeecceeeeccHhhhccccccccceeeeEeccccccccccc
Confidence 999999998876444566777779999999999999999999999999999999999999999999999999887763
Q ss_pred -----CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEcc
Q 000605 142 -----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITP 216 (1397)
Q Consensus 142 -----~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~ 216 (1397)
..+..++.+.+.|.+..+..+++|++.|+||||++|+|++++++||.++|+++|+|+++.+|++||++|||++++
T Consensus 253 v~vvv~dp~kle~ir~~e~~itkeRi~kIl~~ganvVLtt~gIddmc~K~~veagamAVrR~~k~dlk~iakatGat~~s 332 (545)
T KOG0360|consen 253 VQVVVDDPEKLEQIRQREQDITKERIKKILATGANVVLTTGGIDDMCLKYFVEAGAMAVRRCKKEDLKRIAKATGATLLS 332 (545)
T ss_pred ceEEEcChHHHHHHHHHHhHhHHHHHHHHHhcCCcEEEEcCCccHHHHHHHHHcchhhhHHHHHHHHHHHHHhhCCeeee
Confidence 679999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC------CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 217 SIDNI------STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 217 s~d~l------~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
|+.++ .+..+|+|+.|.+++|++ +.++.+.|.+.. .|+|+|||+|...++|++|.+||++
T Consensus 333 Sla~l~geetf~~~~lG~a~evvqeri~d-------------de~ilikg~ka~-~aSiILrgaNd~~~DEmers~hdaL 398 (545)
T KOG0360|consen 333 SLANLEGEETFEPASLGSADEVVQERIGD-------------DELILIKGTKAT-SASIILRGANDFMLDEMERSLHDAL 398 (545)
T ss_pred hhhccccccccChhhccchhHHHHHhccc-------------ceeEEeccCccc-eeeEEEecCCcccHhhhccchhhHH
Confidence 99865 457899999999999987 589999998877 9999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPK 312 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~ 312 (1397)
++++..+.++++|+||||+|..
T Consensus 399 ~VlkrtLes~~vvpGGG~vE~a 420 (545)
T KOG0360|consen 399 CVLKRTLESKSVVPGGGAVETA 420 (545)
T ss_pred HHHHHHhccCccccCccHHHHH
Confidence 9999999999999999999974
No 32
>cd00309 chaperonin_type_I_II chaperonin families, type I and type II. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis.
Probab=100.00 E-value=1.2e-37 Score=382.14 Aligned_cols=259 Identities=22% Similarity=0.296 Sum_probs=238.1
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHH------------------hCCCCcccCChhhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~------------------~~i~~~sk~~~~~w~~~l~~ 64 (1397)
|++++|||||++++.+++++|+||..|+.||.+|+...+..+ +.+++.+|.. ..|.+.|++
T Consensus 83 tt~viL~~~ll~~~~~li~~gi~p~~I~~g~~~a~~~~~~~L~~~~~~~~~~~~~~l~~ia~tsl~sK~~-~~~~~~l~~ 161 (464)
T cd00309 83 TTVVVLAGELLKEAEKLLAAGIHPTEIIRGYEKAVEKALEILKEIAVPIDVEDREELLKVATTSLNSKLV-SGGDDFLGE 161 (464)
T ss_pred hHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhcCccCCCCHHHHHHHhHhccccccc-ccchHHHHH
Confidence 578999999999999999999999999999999877544443 3444444442 469999999
Q ss_pred HHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCCH
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL 144 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~~ 144 (1397)
++++|+..+.++.. ..|. ++|+|++++||++.||++++|++|++++.++.||+.++||||++++|+|++
T Consensus 162 l~~~Ai~~v~~~~~---~~~~-~~I~i~k~~gg~~~ds~li~Gi~~~~~~~~~~m~~~~~n~~Ili~~~~Le~------- 230 (464)
T cd00309 162 LVVDAVLKVGKENG---DVDL-GVIRVEKKKGGSLEDSELVVGMVFDKGYLSPYMPKRLENAKILLLDCKLEY------- 230 (464)
T ss_pred HHHHHHHHhccccC---cccc-ceEEEEecCCCCcccceeeeeEEEecCCCCCCCceeecCceEEEEecCcce-------
Confidence 99999999987532 4555 899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCC
Q 000605 145 ASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTT 224 (1397)
Q Consensus 145 ~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~~ 224 (1397)
||+++++|++.|+++|.++||++++++++.+|+|||++|||++++++++++..
T Consensus 231 ---------------------------lIi~~~~I~~~al~~L~~~~I~~v~~~~~~~L~~Ia~~tGa~ii~~~~~~~~~ 283 (464)
T cd00309 231 ---------------------------VVIAEKGIDDEALHYLAKLGIMAVRRVRKEDLERIAKATGATIVSRLEDLTPE 283 (464)
T ss_pred ---------------------------EEecCCCcCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCcc
Confidence 99999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeec
Q 000605 225 RLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLA 304 (1397)
Q Consensus 225 ~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ 304 (1397)
.+|+|+.|+++++++ ++|++|++|..+.+|||+|||++..+|+|+||+++||++++++++.++.+|+
T Consensus 284 ~lG~~~~v~~~~~g~-------------~~~~~~~~~~~~~~~TIllrG~t~~~l~e~~r~i~dal~~~~~~~~~~~~vp 350 (464)
T cd00309 284 DLGTAGLVEETKIGD-------------EKYTFIEGCKGGKVATILLRGATEVELDEAERSLHDALCAVRAAVEDGGIVP 350 (464)
T ss_pred cCccccEEEEEEEcC-------------eeEEEEEecCCCCEEEEEEeCCcHHHHHHHHHHHHHHHHHHHHHHHcCCccc
Confidence 999999999999986 5899999999999999999999999999999999999999999999999999
Q ss_pred CCCcccccc
Q 000605 305 DEGATLPKM 313 (1397)
Q Consensus 305 ggGa~e~~~ 313 (1397)
||||+|...
T Consensus 351 GGGa~E~~l 359 (464)
T cd00309 351 GGGAAEIEL 359 (464)
T ss_pred CCcHHHHHH
Confidence 999999853
No 33
>KOG0359 consensus Chaperonin complex component, TCP-1 zeta subunit (CCT6) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.7e-38 Score=356.10 Aligned_cols=294 Identities=17% Similarity=0.250 Sum_probs=273.7
Q ss_pred CCcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHH---------------HHHHHhCCCCcccCChhhHHHHHHHHH
Q 000605 2 FSSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVS---------------ELLRAEGIKLGKEDSEEDWLGIITTIA 66 (1397)
Q Consensus 2 ~~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~---------------qLl~~~~i~~~sk~~~~~w~~~l~~l~ 66 (1397)
.||+|+|.|||+++|...+..|+||..|.+|+..|... .|...+.+++.+|.+ .+-.+.+++++
T Consensus 91 ttS~VlligEllkqa~~~i~eGlhprii~~gfe~a~~~~l~~L~k~~~~~~~~~L~~va~tsl~Tkv~-~~la~~lt~~v 169 (520)
T KOG0359|consen 91 TTSVVLLIGELLKQADRYISEGLHPRIITEGFEAAKNKALEFLEKVSREVDRETLKDVARTSLRTKVH-AELADVLTPIV 169 (520)
T ss_pred cceEEEeeHHHHHHHHHHhhcCCCcchhhhHHHHHHHHHHhhhhccccchhHHHHHHHHHHhhcCccc-HHHHhHhHHHH
Confidence 47899999999999999999999999999999998764 345556677777764 57789999999
Q ss_pred HHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-----
Q 000605 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP----- 141 (1397)
Q Consensus 67 ~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~----- 141 (1397)
++|++.++. ..+.+|+ .+|+|.++..++..|+.+|+|+|++++..|..||++++|+-||+++-+|||+|++
T Consensus 170 v~aVl~i~~---~~~~idl-~mveim~mq~~s~~dT~~v~glvLdhg~rHpdmp~~~e~a~iL~~NvSLEYEK~Einsgf 245 (520)
T KOG0359|consen 170 VDSVLCIRR---QEEPIDL-FMVEIMEMQHKSLHDTSLVQGLVLDHGARHPDMPRRVEDAYILICNVSLEYEKPEINSGF 245 (520)
T ss_pred Hhhheeecc---CCCCcch-hHHHhhhhccCchhhhHHhhhhhccCCCCCcccccchhceEEEEeeccccccccccccch
Confidence 999999983 4567999 9999999999999999999999999999999999999999999999999999997
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHhcCCc----EEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 142 --NQLASFNTLLQQENDHLKMVISKIEALRPN----VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 --~~~~sle~ii~qE~e~L~~~V~rI~~~~pn----VVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
+...+-+.+...|++++.+.+.+|+.++-. ||+.||||++..++.|.+.||++++|.|+..|||+..+||+..+
T Consensus 246 fYsta~ere~L~~~eR~Fi~~r~~kiielk~~vc~fvvinqkGidp~sld~~a~~gIlaLRRAKRRNmERL~lacGG~a~ 325 (520)
T KOG0359|consen 246 FYSTAEEREVLVLAERKFIDQRVRKIIELKRKVCEFVVINQKGIDPTSLDSLAKSGILALRRAKRRNMERLVLACGGEAV 325 (520)
T ss_pred hccchhHHHHHHHHHHHHHHHHHHHHHHHhhhcceEEEecccCCCCCcchhhhhcchHHHHHHhhhhHHHHHHhhcccee
Confidence 356788899999999999999999998765 78999999999999999999999999999999999999999999
Q ss_pred cccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHH
Q 000605 216 PSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYH 295 (1397)
Q Consensus 216 ~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~ 295 (1397)
+|+|+|++..||+|+++++.++|+| +|+|+|+|+++..|||+++|+|.+.+..+|.+++|++.+++|
T Consensus 326 nsvddLtp~~LG~aglVye~tlGEE-------------kfTFIE~~~~p~S~TiLikgpnkht~tQikdairdglrav~n 392 (520)
T KOG0359|consen 326 NSVDDLTPDYLGYAGLVYEYTLGEE-------------KFTFIEKCNNPSSVTILIKGPNKHTITQIKDAIRDGLRAVKN 392 (520)
T ss_pred cccccCChhhccccceeEEeeccce-------------eeEeeecCCCCcceEEEEeCCccchHHHHHHHHhhHHHHHHH
Confidence 9999999999999999999999985 899999999999999999999999999999999999999999
Q ss_pred hhccCeeecCCCcccccc
Q 000605 296 LSLETSFLADEGATLPKM 313 (1397)
Q Consensus 296 ~~le~~~l~ggGa~e~~~ 313 (1397)
.+.++.+++|+|+.+.+.
T Consensus 393 tl~d~~~i~Gaga~~va~ 410 (520)
T KOG0359|consen 393 TLEDKCGIPGAGAFEVAL 410 (520)
T ss_pred HhhhcccccCchHHHHHH
Confidence 999999999999998753
No 34
>PF00118 Cpn60_TCP1: TCP-1/cpn60 chaperonin family Chaperonins cpn60 signature Chaperonins TCP-1 signatures 60 kd chaperonin signature; InterPro: IPR002423 Partially folded polypeptide chains, either newly made by ribosomes or emerging from mature proteins unfolded by stress, run the risk of aggregating with one another to the detriment of the organism. Folding of newly synthesised polypeptides in the crowded cellular environment requires the assistance of molecular chaperone proteins, such as the large bacterial chaperonins GroEL and GroES. GroEL and GroES prevent aggregation by encapsulating individual chains within the so-called 'Anfinsen cage' provided by the GroEL-GroES complex, where they can fold in isolation from one another []. GroEL consists of two heptameric rings of identical ATPase subunits stacked back to back, containing a cage in each ring. Each subunit consists of three domains. The equatorial domain contains the nucleotide binding site and is connected by a flexible intermediate domain with the apical domain. The latter presents several hydrophobic amino-acid side chains at the top of the ring, orientated towards the cavity of the cage. These side chains are involved in binding either a partially folded polypeptide chain or a single molecule of GroES. The assembly of proteins has been thought to be the sole result of properties inherent in the primary sequence of polypeptides themselves. In some cases, however, structural information from other protein molecules is required for correct folding and subsequent assembly into oligomers []. These 'helper' molecules are referred to as molecular chaperones, a subfamily of which are the chaperonins [], which include 10 kDa and 60 kDa proteins. These are found in abundance in prokaryotes, chloroplasts and mitochondria. They are required for normal cell growth (as demonstrated by the fact that no temperature sensitive mutants for the chaperonin genes can be found in the temperature range 20 to 43 degrees centigrade []), and are stress-induced, acting to stabilise or protect disassembled polypeptides under heat-shock conditions []. The 10 kDa chaperonin (cpn10 - or groES in bacteria) exists as a ring-shaped oligomer of between 6 to 8 identical subunits, whereas the 60 kDa chaperonin (cpn60 - or groEL in bacteria) forms a structure comprising 2 stacked rings, each ring containing 7 identical subunits []. These ring structures assemble by self-stimulation in the presence of Mg2+-ATP. The cpn10 and cpn60 oligomers also require Mg2+-ATP in order to interact to form a functional complex, although the mechanism of this interaction is as yet unknown []. This chaperonin complex is essential for the correct folding and assembly of polypeptides into oligomeric structures, of which the chaperonins themselves are not a part []. The binding of cpn10 to cpn60 inhibits the weak ATPase activity of cpn60. The 60 kDa form of chaperonin is the immunodominant antigen of patients with Legionnaire's disease [], and is thought to play a role in the protection of the Legionella bacteria from oxygen radicals within macrophages. This hypothesis is based on the finding that the cpn60 gene is upregulated in response to hydrogen peroxide, a source of oxygen radicals. Cpn60 has also been found to display strong antigenicity in many bacterial species [], and has the potential for inducing immune protection against unrelated bacterial infections. The RuBisCO subunit binding protein (which has been implicated in the assembly of RuBisCO) and cpn60 have been found to be evolutionary homologues, the RuBisCO subunit binding protein having the C-terminal Gly-Gly-Met repeat found in all bacterial cpn60 sequences. Although the precise function of this repeat is unknown, it is thought to be important as it is also found in 70 kDa heat-shock proteins []. The crystal structure of Escherichia coli GroEL has been resolved to 2.8A []. The TCP-1 family of proteins act as molecular chaperones for tubulin, actin and probably some other proteins. They are weakly, but significantly, related to the cpn60/groEL chaperonin family. ; GO: 0005524 ATP binding, 0044267 cellular protein metabolic process; PDB: 3IZH_B 3IZI_I 3LOS_I 3IYF_H 3KFK_C 3KFE_E 3RUV_C 3IZK_L 3J02_B 3RUQ_A ....
Probab=100.00 E-value=3.9e-37 Score=379.89 Aligned_cols=289 Identities=26% Similarity=0.372 Sum_probs=263.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHH-----------------HhCCCCcccCChhhHHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLR-----------------AEGIKLGKEDSEEDWLGIITTI 65 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~-----------------~~~i~~~sk~~~~~w~~~l~~l 65 (1397)
|++|+||++|++++..++++|+||..|+.|+..++...+.. .+.+.+.++. ...|.+.|+++
T Consensus 64 ts~vlL~~~ll~~~~~li~~gi~p~~I~~~~~~~~~~~~~~l~~~s~~~~~~~~~l~~i~~t~l~~k~-~~~~~~~l~~l 142 (485)
T PF00118_consen 64 TSVVLLACELLRNALKLIKKGIHPQEIIRGLQEALKIILEYLEKISIPINNDDESLLNIAKTSLNSKI-SSSWSDHLSKL 142 (485)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHHHHHHHHSEESTSTSHHHHHHHHHHHTTSC-GGGCHHHHHHH
T ss_pred ceeeecccchhhhhhhhhhccccccchhhhhhhhhhhhhhhhhhhhccccccchhhhhhhcccccccc-cccchhhhhhh
Confidence 57899999999999999999999999999999997644433 3334444442 36899999999
Q ss_pred HHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccC-----
Q 000605 66 AWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRV----- 140 (1397)
Q Consensus 66 ~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~----- 140 (1397)
+++|+..+..+ +|+ +.++|+++.||+.+||++++|++|++++++.+||++++||||++++++|++.+.
T Consensus 143 i~~a~~~~~~~------~~~-~~i~i~~i~g~~~~dS~li~Giv~~~~~~~~~~~~~~~~~~Ill~~~~L~~~~~~~~~~ 215 (485)
T PF00118_consen 143 IVDAIKSIKSN------FDL-DNIKIIKIPGGSISDSELINGIVLDKGFSSPNMPKKIENPKILLLNCPLEYSKSFKSEI 215 (485)
T ss_dssp HHHHHHHHTTT------HHG-GGEEEEEEESSSSGGEEEESEEEESSSBSSTTSBSEEESEEEEEESSEBSSCCHSTEEE
T ss_pred HHHHHHhhccc------ccc-cchhhhhhccccccccccccceeeeccccccccccccccceEEeeeccccccccccccc
Confidence 99999555432 666 569999999999999999999999999999999999999999999999999987
Q ss_pred -cCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccc
Q 000605 141 -PNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSID 219 (1397)
Q Consensus 141 -~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d 219 (1397)
.+....++.+.++|+++++.++++|.+.|++||+++++|++.|+++|.++||.++.+|+..+|+|||++|||.++++++
T Consensus 216 ~~~~~~~~~~~~~~e~~~l~~~~~~i~~~~~~lIi~~~~i~~~~l~~l~~~~I~~i~~v~~~~l~~i~~~tg~~ii~~~~ 295 (485)
T PF00118_consen 216 RITSPEQLDELSKQEKKYLKKILEKIINLGVNLIISQKSIDDEALQYLNKNGILVIRRVSKEDLERIARATGASIISSLD 295 (485)
T ss_dssp EESSTHHHHHHHHHHHHHHHHHHHHHHTTTSSEEEESSEBTHHHHHHHHHCTHEEESSEHHHHHHHHHHHHTSBEBSSCG
T ss_pred chhhHHHHHHHHhhhhhhhccccceEeeeccceeeeecccccccchhhhhhhhhccccchHHHHHhhhcccCCcEecccc
Confidence 3578899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEE--cCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhh
Q 000605 220 NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE--GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1397)
Q Consensus 220 ~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~--gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~ 297 (1397)
++++..+|+|+.+++..+++ ++|++|+ +|.....|||+|||++..+++++||++++|++++++++
T Consensus 296 ~l~~~~lG~~~~v~~~~i~~-------------~~~~~~~~~~~~~~~~~Till~g~t~~~l~e~~~~i~dal~~~~~~~ 362 (485)
T PF00118_consen 296 DLSDEDLGFCKSVEEREIGN-------------KKYIFIEGIGCLSSKICTILLRGPTEFELEERERSIHDALKVLRSAL 362 (485)
T ss_dssp GSTGGGSEEEEEEEEEEETS-------------SEEEEEEEHSESSSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhhhhhhhhhccccc-------------ccccccccccccccCceEEEeccccchhHHHHHHHHHHHHHHHHHhc
Confidence 99988899999999998886 5899999 68999999999999999999999999999999999999
Q ss_pred ccCeeecCCCccccc
Q 000605 298 LETSFLADEGATLPK 312 (1397)
Q Consensus 298 le~~~l~ggGa~e~~ 312 (1397)
.++.+|+|||++|..
T Consensus 363 ~~~~vvpGGG~~e~~ 377 (485)
T PF00118_consen 363 KDGGVVPGGGATELH 377 (485)
T ss_dssp HSSEEEETTTHHHHH
T ss_pred cCCceeecCcchhhh
Confidence 999999999999974
No 35
>cd03341 TCP1_theta TCP-1 (CTT or eukaryotic type II) chaperonin family, theta subunit. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings. In contrast to bacterial group I chaperonins (GroEL), each ring of the eukaryotic cytosolic chaperonin (CTT) consists of eight different, but homologous subunits. Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. The best studied in vivo substrates of CTT are actin and tubulin.
Probab=100.00 E-value=8.6e-37 Score=374.09 Aligned_cols=262 Identities=17% Similarity=0.235 Sum_probs=235.4
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCc---ccCCh---------------hhHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLG---KEDSE---------------EDWLGIITT 64 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~---sk~~~---------------~~w~~~l~~ 64 (1397)
|++|+|||+||+++.+++++|+||..|+.||.+|+...+..+...... ...+. ..|.+.|++
T Consensus 83 Tt~vvL~~~Ll~~~~~li~~gi~p~~Ii~g~~~a~~~~~~~L~~~~~~~~~~~~~~~~l~~i~~t~l~sk~~~~~~~l~~ 162 (472)
T cd03341 83 NLVVVLAGELLEKAEELLRMGLHPSEIIEGYEKALKKALEILEELVVYKIEDLRNKEEVSKALKTAIASKQYGNEDFLSP 162 (472)
T ss_pred hhHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccccCCccCHHHHHHHHHHHhcccccchHHHHHH
Confidence 678999999999999999999999999999999987655555443321 10010 137889999
Q ss_pred HHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCCH
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQL 144 (1397)
Q Consensus 65 l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~~ 144 (1397)
|+++|+..+.++ ..+.+|+ +.|+|+|++||+..||++++|++|++++. .|+++++||||++++++||+
T Consensus 163 l~~~a~~~~~~~--~~~~~~~-~~i~i~ki~Gg~~~ds~lv~Giv~~~~~~--~~~~~~~n~~Ili~~~~Le~------- 230 (472)
T cd03341 163 LVAEACISVLPE--NIGNFNV-DNIRVVKILGGSLEDSKVVRGMVFKREPE--GSVKRVKKAKVAVFSCPFDI------- 230 (472)
T ss_pred HHHHHHHHHhhc--cCCcCCh-hHeEEEEecCCCcccceEEeeEEEccccC--CCceeccCCcEEEEeccccC-------
Confidence 999999999764 2346888 88999999999999999999999988765 45699999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCC
Q 000605 145 ASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTT 224 (1397)
Q Consensus 145 ~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~~ 224 (1397)
|++||+++++|++.|+++|.++||++++++++.+|+|||++|||+++++++++++.
T Consensus 231 ------------------------g~~lvi~~~~I~d~al~~l~~~~I~av~~~~~~~Le~Ia~~tGa~ii~~~~~l~~~ 286 (472)
T cd03341 231 ------------------------GVNVIVAGGSVGDLALHYCNKYGIMVIKINSKFELRRLCRTVGATPLPRLGAPTPE 286 (472)
T ss_pred ------------------------CCeEEEECCCCCHHHHHHHHHCCeEEEEeCCHHHHHHHHHHhCCEEecccccCCHh
Confidence 99999999999999999999999999999999999999999999999999999999
Q ss_pred CcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCC-CceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeee
Q 000605 225 RLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR-RLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFL 303 (1397)
Q Consensus 225 ~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~-~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l 303 (1397)
.+|+|+.|+++++++ ++|++|+||.. +.+|||+|||+++.+++|+||.++||++++++++.++++|
T Consensus 287 ~lG~~~~v~~~~ig~-------------~~~~~~~~~~~~~~~~TI~lrG~t~~~l~E~er~i~DAl~~~~~ai~~~~vV 353 (472)
T cd03341 287 EIGYCDSVYVEEIGD-------------TKVVVFRQNKEDSKIATIVLRGATQNILDDVERAIDDGVNVFKSLTKDGRFV 353 (472)
T ss_pred HCCCceEEEEEEECC-------------eeEEEEEccCCCCCeEEEEEECCCHHHHHHHHHHHHHHHHHHHHHhcCCCEE
Confidence 999999999999875 58999999987 8999999999999999999999999999999999999999
Q ss_pred cCCCcccccc
Q 000605 304 ADEGATLPKM 313 (1397)
Q Consensus 304 ~ggGa~e~~~ 313 (1397)
+||||+|...
T Consensus 354 pGGG~~e~~l 363 (472)
T cd03341 354 PGAGATEIEL 363 (472)
T ss_pred eCcCHHHHHH
Confidence 9999999853
No 36
>cd03333 chaperonin_like chaperonin_like superfamily. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. There are 2 main chaperonin groups. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). The symmetry of type II is eight- or nine-fold and they are found in archea (thermosome), thermophilic bacteria (TF55) and in the eukaryotic cytosol (CTT). Their common function is to sequester nonnative proteins inside their central cavity and promote folding by using energy derived from ATP hydrolysis. This superfamily also contains related domains from Fab1-like phosphatidylinositol 3-phosphate (PtdIns3P) 5-kinases that only contain the intermediate and apical domains.
Probab=100.00 E-value=6.7e-36 Score=329.20 Aligned_cols=207 Identities=33% Similarity=0.469 Sum_probs=194.8
Q ss_pred HHHHHhCCCCcccCChhhHHHHHHHHHHHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCC
Q 000605 40 ELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM 119 (1397)
Q Consensus 40 qLl~~~~i~~~sk~~~~~w~~~l~~l~~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~M 119 (1397)
.|+..+.+++.+|. ..|.+.|++++++|+..+.++.. ++..++|+|++++||++.||++++|++|+|+++|+.|
T Consensus 3 ~l~~ia~ts~~sk~--~~~~~~l~~l~~~Av~~v~~~~~----~~~~~~I~i~~~~gg~~~ds~li~Gv~~~~~~~~~~m 76 (209)
T cd03333 3 LLLQVATTSLNSKL--SSWDDFLGKLVVDAVLKVGPDNR----MDDLGVIKVEKIPGGSLEDSELVVGVVFDKGYASPYM 76 (209)
T ss_pred HHHHHHHHHhccch--hhHHHHHHHHHHHHHHHhhccCC----CCchHHEEEEEecCcChhhceeEeeEEEeccccCCCC
Confidence 46677778888886 79999999999999999987422 5555999999999999999999999999999999999
Q ss_pred cceecCccEEEEeeecccccCcCCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000605 120 TSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1397)
Q Consensus 120 p~~i~nprIlll~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk 199 (1397)
|++++||||||++++||| ||+++|+|++.|+++|.++||+++++++
T Consensus 77 ~~~~~n~~Ill~~~~le~----------------------------------vii~~~~I~~~al~~l~~~~I~~v~~~~ 122 (209)
T cd03333 77 PKRLENAKILLLDCPLEY----------------------------------VVIAEKGIDDLALHYLAKAGIMAVRRVK 122 (209)
T ss_pred CeEcCCCcEEEEeCCeeE----------------------------------EEEecCcccHHHHHHHHHCCCEEEEeCC
Confidence 999999999999999999 9999999999999999999999999999
Q ss_pred hHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHH
Q 000605 200 RPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREEL 279 (1397)
Q Consensus 200 ~~~LerIar~TgA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L 279 (1397)
+.+|+|||++|||++++++++++.+.||+|+.|+++++++ ++|++|+||..+.+|||+|||++..+|
T Consensus 123 ~~~l~~ia~~tga~ii~~~~~~~~~~lG~~~~v~~~~~~~-------------~~~~~~~~~~~~~~~tIllrG~t~~~l 189 (209)
T cd03333 123 KEDLERIARATGATIVSSLEDLTPEDLGTAELVEETKIGE-------------EKLTFIEGCKGGKAATILLRGATEVEL 189 (209)
T ss_pred HHHHHHHHHHHCCEEecccccCChhhceeeeEEEEEEECC-------------eEEEEEEcCCCCCEEEEEEECCCHhHH
Confidence 9999999999999999999999999999999999999986 699999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhcc
Q 000605 280 KKVKHVVQYAVFAAYHLSLE 299 (1397)
Q Consensus 280 ~evkr~l~d~l~v~~~~~le 299 (1397)
+|+||+++||++++++++++
T Consensus 190 ~e~kr~l~dal~~~~~~~~~ 209 (209)
T cd03333 190 DEVKRSLHDALCAVRAAVEE 209 (209)
T ss_pred HHHHHHHHHHHHHHHHHhhC
Confidence 99999999999999999864
No 37
>COG0459 GroL Chaperonin GroEL (HSP60 family) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.4e-35 Score=360.35 Aligned_cols=290 Identities=19% Similarity=0.203 Sum_probs=263.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCC----------------CcccCChhhHHHHHHHHH
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK----------------LGKEDSEEDWLGIITTIA 66 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~----------------~~sk~~~~~w~~~l~~l~ 66 (1397)
|+++||||+||++|..++++|+||..|..||.+|....+..+..++ +.++. ...+ +.|+.|+
T Consensus 86 TtavVLa~all~ea~~li~~gi~P~~I~~G~~~A~~~~~e~l~~~a~~v~~~~~~~~~~~t~v~sk~-~~~~-~~i~~lv 163 (524)
T COG0459 86 TTAVVLAGALLKEAEKLIAAGIHPTVIKRGYRLAVEKAVEELKEIAKPVSDSEEELKIAITSVASKS-ANSD-EEIGELV 163 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHhhccCCcchhhhhhhhheeeeee-ccCh-HHHHHHH
Confidence 6889999999999999999999999999999999876655544432 22222 1345 8999999
Q ss_pred HHHhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEee-ccCCCCCc-ceecCccEEEEeeecccccCc---
Q 000605 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTK-NIKHKRMT-SQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 67 ~~a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K-~~a~k~Mp-~~i~nprIlll~~~Ley~r~~--- 141 (1397)
++|+..|..... |+ +.|++.|..||+..|+++++|++|+| .+.|..|| ++++||+|||++++|++.+.+
T Consensus 164 ~~Av~~v~~~~~-----d~-~~i~~vk~~gg~~~e~~vveG~~~dkg~~s~~~~~~~~~e~~~Ili~d~~l~~~k~~l~~ 237 (524)
T COG0459 164 VEAVEKVGKEQS-----DL-DGIIIVKESGGSETELEVVEGMVFDKGYLSPYFMPDKRLENPKILLLDKKLEIKKPELPL 237 (524)
T ss_pred HHHHHHhccccc-----cc-CCeEEEEecCCCccceEEEeeEEecCCccCCCCCCccccccceEEEEccccccccccCcc
Confidence 999999986421 66 88999999999999999999999999 89999999 899999999999999999874
Q ss_pred ----CCHHHHHHHHHHHH-HHHHHHHHHHHhcCCc-EEEecCCCcHHHHHHHHHcCcEEEEccChHHH-HHHHHHhCCeE
Q 000605 142 ----NQLASFNTLLQQEN-DHLKMVISKIEALRPN-VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLL-ERIARCTGALI 214 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~-e~L~~~V~rI~~~~pn-VVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~L-erIar~TgA~I 214 (1397)
+....|..|.++|+ ++|..+|.+|+..++| ||+++++|+++|++||.+.||+++++|++++| +||+++|||.+
T Consensus 238 e~~i~~~~~l~~i~e~ee~e~l~~~v~ni~~~g~~~vvv~~~gi~D~~~~~L~d~~Ilt~~~v~~~dl~~~l~~~~ga~~ 317 (524)
T COG0459 238 EIVISSGKPLLIIAEDEEGEALATLVVNILRGGANVVVVKAPGIDDLAKAYLEDIAILTGRRVKKEDLGERLAKLGGAKI 317 (524)
T ss_pred eeEecCccHHHHHHHHHHHHHHHHHHHHHHhcCCCEEEEECCCCcHHHHHHHHhhcceecceecchhhHHHHHHccCceE
Confidence 45668889999999 9999999999999999 99999999999999999999999999999999 89999999999
Q ss_pred ccccccCCCCCcce--eeeEEEEEeccccccccccCCCCCceEEEEEcCCC--CceeEEEeccCCHHHHHHHHHHHHHHH
Q 000605 215 TPSIDNISTTRLGH--CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPR--RLGCMVLLRGKCREELKKVKHVVQYAV 290 (1397)
Q Consensus 215 i~s~d~l~~~~LG~--c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~--~~gcTIlLRG~s~~~L~evkr~l~d~l 290 (1397)
++.++++++..+|. |+.++..+++++ .+.+|++|.. ...|||+|||+++.+++|+||.++|||
T Consensus 318 v~~~~d~t~~~~G~~~~~~ve~~~~~~~-------------~~~~~~~~~~~~~~~~tI~vrgate~~ldE~er~i~DAL 384 (524)
T COG0459 318 VSVLKDLTTIVLGEGAAGLVEETKTGDY-------------DMEKLQERKAKAGGVATILVRGATEVELDEKERRIEDAL 384 (524)
T ss_pred EeecccCceeecCccccceEEEeeccch-------------hhhhhhhhhhcCCCeEEEEECCccHhHHHHHHHHHHHHH
Confidence 99999999999999 999999988873 6889999985 789999999999999999999999999
Q ss_pred HHHHHhhccCeeecCCCcccccc
Q 000605 291 FAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 291 ~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++++++++++.+|+|||++|.+.
T Consensus 385 ~~~~~ave~g~iV~GGGa~e~~~ 407 (524)
T COG0459 385 NVVRAAVEEGKIVPGGGAAEIEA 407 (524)
T ss_pred HHHHHHHhcCCeEeCCCHHHHHH
Confidence 99999999999999999999853
No 38
>KOG0362 consensus Chaperonin complex component, TCP-1 theta subunit (CCT8) [Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.5e-31 Score=304.20 Aligned_cols=291 Identities=15% Similarity=0.174 Sum_probs=259.0
Q ss_pred cceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccC---Ch------------hhHHHHHHHHHHH
Q 000605 4 SSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKED---SE------------EDWLGIITTIAWQ 68 (1397)
Q Consensus 4 s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~---~~------------~~w~~~l~~l~~~ 68 (1397)
.+|+||||||++|++|+..|.+|.+|++||.+|....+....++....-. +. ..-.+++++++++
T Consensus 102 fvvvla~~LLe~Ae~li~~Gl~~~ei~~gy~~A~~~~~e~l~~lv~~~~~d~~d~~~~~rs~i~skq~~~ed~l~~lVa~ 181 (537)
T KOG0362|consen 102 FVVVLAGALLEQAEELIRMGLTPAEISEGYETATKEALEILPELVVQSIGDLEDKEWALRSVIMSKQYGNEDFLTKLVAK 181 (537)
T ss_pred EeehhHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHhcccccChHHHHHHHHHHhhcchHHHHHHHHHH
Confidence 57999999999999999999999999999999987766555443322111 11 1236899999999
Q ss_pred HhhccCcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCc-------
Q 000605 69 AANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP------- 141 (1397)
Q Consensus 69 a~~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~------- 141 (1397)
|+..+.|. ..+++ ++|+|.||.||++.+|+++.|+||+..+. +-+++-+.+||++++||++...++
T Consensus 182 ac~si~p~----~~Fnv-dnIrVcKi~Gg~l~~S~Vv~GmVfkr~~e--G~v~~ak~arvAvf~cP~d~~~TEtkgTvLi 254 (537)
T KOG0362|consen 182 ACVSILPL----MSFNV-DNIRVCKILGGGLEDSCVVCGMVFKRDPE--GEVKSAKDARVAVFACPFDIAQTETKGTVLL 254 (537)
T ss_pred HHHhhccc----ccccc-cceEEEEEecCCcccceeeEEEEeccccC--CcccccccceeEEEecCCCcccccCcceeee
Confidence 99999985 23888 89999999999999999999999988766 344888899999999999999886
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccC
Q 000605 142 NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNI 221 (1397)
Q Consensus 142 ~~~~sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l 221 (1397)
.+...+..+.+.|...++.+|+.|...|++||++.+.|++++++||.+++|+|++--++-+|.|++|..||.+++.+-.+
T Consensus 255 ~~A~el~~FSKgEe~lle~~vk~Ia~~gvkViV~~g~V~em~Lhflnky~ImVlqi~Sk~eLrrlcrtvGA~~l~rl~~P 334 (537)
T KOG0362|consen 255 KNAKELLNFSKGEEALLEEQVKAIADAGVKVIVSGGKVDEMTLHFLNKYKIMVLQINSKFDLRRLCRTVGATALPRLFPP 334 (537)
T ss_pred cCcHhhhhhccccHHHHHHHHHHHHhcCCeEEEecCccchhhhhhhccccEEEEEeccHhhHHHHHHHcCCccchhccCC
Confidence 45788888999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCcceeeeEEEEEeccccccccccCCCCCceEEEEE-cCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccC
Q 000605 222 STTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFE-GCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLET 300 (1397)
Q Consensus 222 ~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~-gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~ 300 (1397)
..+.+|+|+.++.+++|++ +++.|+ +|......||+|||++...||.+||++.+++++++.+..++
T Consensus 335 ~~~~lG~~d~V~~~EiG~~-------------~v~vF~~e~~~~~~~TvVLRgst~s~LDd~ERAVddgV~tyK~l~~d~ 401 (537)
T KOG0362|consen 335 APEELGYCDSVSTQEIGDT-------------LVVVFRWESTGTRVATVVLRGATQSILDDAERAVDDGVNTYKALCSDS 401 (537)
T ss_pred CCccccccceeeeeecCCc-------------eEEEEeeccCCCceeEEEEcccchhhHHHHHHHHHHhHHHhhhhccCC
Confidence 9999999999999999873 677776 66678899999999999999999999999999999999999
Q ss_pred eeecCCCccccccc
Q 000605 301 SFLADEGATLPKMR 314 (1397)
Q Consensus 301 ~~l~ggGa~e~~~~ 314 (1397)
++++|+|++|.++.
T Consensus 402 rLlpGagatEieLa 415 (537)
T KOG0362|consen 402 RLLPGAGATEIELA 415 (537)
T ss_pred ccccCCchhHHHHH
Confidence 99999999998653
No 39
>PRK12849 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=4.4e-31 Score=326.93 Aligned_cols=265 Identities=16% Similarity=0.204 Sum_probs=225.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+||||||++|..++++|+||..|+.||.+|+...+..+..++...+.. ...+.+.|++++++|+..+
T Consensus 89 TtvviLageLL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~Av~~v 168 (542)
T PRK12849 89 TTATVLAQALVQEGLKNVAAGANPMDLKRGIDKAVEAVVEELKALARPVSGSEEIAQVATISANGDEEIGELIAEAMEKV 168 (542)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999987666665544322210 1246789999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCc-ceEEEeEEEeeccCCCC-------CcceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~d-S~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .+.|+ .||+..| +++++|++|++.+.+.. |+++++||+|+++++.|. +..
T Consensus 169 ~~~----g------~i~i~--~g~~~~d~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~------~~~ 230 (542)
T PRK12849 169 GKD----G------VITVE--ESKTLETELEVTEGMQFDRGYLSPYFVTDPERMEAVLEDPLILLTDKKIS------SLQ 230 (542)
T ss_pred ccC----C------cEeEE--eCCCcceeEEEEEeEEEecCcccCcccccccCceEEeeCcEEEeecCCcC------CHH
Confidence 642 1 23333 7999887 79999999999999884 689999999999999652 222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHc------CcEEEEccC-----hHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------gI~vi~~Vk-----~~~LerIar~TgA~I 214 (1397)
+ +..++++|.+.|++||+++++|++.|+++|.++ ||+++++++ +.+|+|||++|||.+
T Consensus 231 ~-----------~~~~l~~i~~~~~~lvI~~~~I~~~al~~l~~~~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tGa~~ 299 (542)
T PRK12849 231 D-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTV 299 (542)
T ss_pred H-----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhhhhccccEEEEeCCCccchhHhHHHHHHHHhCCEE
Confidence 2 334789999999999999999999999999999 999999888 455999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-------------------------
Q 000605 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1397)
Q Consensus 215 i~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------- 264 (1397)
++ +++++++..||+|+.|++.. +++++|+||..+
T Consensus 300 v~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~r~~~l~~~~~~~~~~~~~~~ 363 (542)
T PRK12849 300 ISEDLGLKLEEVTLDDLGRAKRVTITK----------------DNTTIVDGAGDKEAIEARVAQIRRQIEETTSDYDREK 363 (542)
T ss_pred ecccccCCcccCCHHHCceeeEEEEee----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 99 68899888999999998754 278889999875
Q ss_pred ----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
..|||+|||+|..+++|++|.++||++++++++.++ ||+||||+|...
T Consensus 364 l~eR~~~l~~~~~TI~irG~t~~~l~E~er~i~DAl~~~~~a~~~g-~VpGGGa~e~~l 421 (542)
T PRK12849 364 LQERLAKLAGGVAVIKVGAATEVELKERKDRVEDALNATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHHhcCCeEEEEeCCCCHHHHHHHHHHHHHHHHHHHHHHHcC-eecCCCHHHHHH
Confidence 489999999999999999999999999999999996 999999999854
No 40
>PRK00013 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=8.8e-31 Score=324.22 Aligned_cols=266 Identities=17% Similarity=0.203 Sum_probs=231.3
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+||||||+++.+++++|+||..|+.||.+|+...+..+..++...+.. ...+.+.|++++++|+..+
T Consensus 89 TtvviLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~~~~~~~l~~va~ts~~~~~~ls~lv~~Av~~v 168 (542)
T PRK00013 89 TTATVLAQAIVREGLKNVAAGANPMDLKRGIDKAVEAAVEELKKISKPVEDKEEIAQVATISANGDEEIGKLIAEAMEKV 168 (542)
T ss_pred chHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999987777666554432210 1237889999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCC-------CcceecCccEEEEeeecccccCcCCHHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Ley~r~~~~~~s 146 (1397)
.++ ..|.|++.+| ...||++++|++|++.+.++. |++.++||+||++++.|. ++.+
T Consensus 169 ~~~----------g~i~i~~~~~-~~~~~~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ilv~d~~i~------~~~~ 231 (542)
T PRK00013 169 GKE----------GVITVEESKG-FETELEVVEGMQFDRGYLSPYFVTDPEKMEAELENPYILITDKKIS------NIQD 231 (542)
T ss_pred CcC----------CcEEEEEcCC-CCceEEEEEeEEecCCcccccccccccCCeEEEecCEEEEEcCccC------CHHH
Confidence 642 1388999887 888999999999999999884 489999999999999652 2222
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcC------cEEEEccC-----hHHHHHHHHHhCCeEc
Q 000605 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLNVK-----RPLLERIARCTGALIT 215 (1397)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~g------I~vi~~Vk-----~~~LerIar~TgA~Ii 215 (1397)
+..++++|.+.|++|||++++|++.|+++|..++ |++|++++ +.+|+|||++|||.++
T Consensus 232 -----------l~~~l~~i~~~g~~lvi~~~~I~~~al~~l~~~~~~g~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~i 300 (542)
T PRK00013 232 -----------LLPVLEQVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLKVVAVKAPGFGDRRKAMLEDIAILTGGTVI 300 (542)
T ss_pred -----------HHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHcCCcccceEEEEecCCcccchhhhHHHHHHHcCCEEe
Confidence 3467889999999999999999999999999997 99999887 8899999999999999
Q ss_pred c-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc-------------------------
Q 000605 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1397)
Q Consensus 216 ~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------- 265 (1397)
+ ++++++...||+|+.|++.. +++++|+||..+.
T Consensus 301 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 364 (542)
T PRK00013 301 SEELGLKLEDATLEDLGQAKKVVVTK----------------DNTTIVDGAGDKEAIKARVAQIKAQIEETTSDYDREKL 364 (542)
T ss_pred cccccCCcccCCHHHCCeeeEEEEec----------------CEEEEEeCCCCHHHHHHHHHHHHHHHhhcCCHHHHHHH
Confidence 9 79999989999999998763 3789999998765
Q ss_pred ----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
.|||+|||+|+.+++|++|.++||++++++++.++ ||+||||+|.+.
T Consensus 365 ~eRi~~l~g~~~tI~irG~t~~~l~E~er~i~Dal~~vk~al~~g-~VpGGGa~e~~~ 421 (542)
T PRK00013 365 QERLAKLAGGVAVIKVGAATEVEMKEKKDRVEDALHATRAAVEEG-IVPGGGVALLRA 421 (542)
T ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCcHHHHHHH
Confidence 78999999999999999999999999999999995 999999999854
No 41
>PRK12851 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=1.6e-30 Score=322.09 Aligned_cols=266 Identities=17% Similarity=0.208 Sum_probs=230.0
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+||||||++|..++++|+||..|+.||++|+...+..+...+...+.. ...+.+.|++++++|+..+
T Consensus 90 TtvviLa~~LL~~a~~li~~Gihp~~I~~G~~~a~~~~~~~L~~~s~~~~~~~~l~~va~~s~~~~~~l~~lv~~Av~~v 169 (541)
T PRK12851 90 TTATVLAQAIVREGAKAVAAGANPMDLKRGIDRAVAAVVEELKANARPVTTNAEIAQVATISANGDAEIGRLVAEAMEKV 169 (541)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999887766665544332211 1246889999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCC-------CcceecCccEEEEeeecccccCcCCHHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Ley~r~~~~~~s 146 (1397)
.++ ..|.|.+.. |...++++++|++|++.+.++. ||++++||+||+++++++. +.
T Consensus 170 g~~----------g~i~i~~~~-~~~~~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~Ilv~d~~i~~------~~- 231 (541)
T PRK12851 170 GNE----------GVITVEESK-TAETELEVVEGMQFDRGYLSPYFVTDADKMEAELEDPYILIHEKKISN------LQ- 231 (541)
T ss_pred ccc----------CceEEEEcc-CCCcceEEEEEEEecCCccccccccCCCCCeEEecccEEEEEcCCcCc------HH-
Confidence 642 135777766 6788999999999999999884 9999999999999998641 11
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCc------EEEEc-----cChHHHHHHHHHhCCeEc
Q 000605 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALIT 215 (1397)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI------~vi~~-----Vk~~~LerIar~TgA~Ii 215 (1397)
.+..++++|.+.|++||+++++|++.|+++|.++|| ++|++ +++.+|+|||++|||.++
T Consensus 232 ----------~i~~~l~~i~~~~~~lvi~~~~I~~~al~~l~~n~i~g~~~i~av~~p~~~~~~~~~l~~ia~~tGa~~i 301 (541)
T PRK12851 232 ----------DLLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNKLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGTVI 301 (541)
T ss_pred ----------HHHHHHHHHHHhCcCEEEECCCCChHHHHHHHHcCCcCceeEEEEecCccccccHhHHHHHHHHhCCEEe
Confidence 266788999999999999999999999999999997 88886 999999999999999999
Q ss_pred c-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc-------------------------
Q 000605 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1397)
Q Consensus 216 ~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------- 265 (1397)
+ +++++++..||+|+.|++++ + ++++|+||..+.
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~--~--------------~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 365 (541)
T PRK12851 302 SEDLGIKLENVTLEQLGRAKKVVVEK--E--------------NTTIIDGAGSKTEIEGRVAQIRAQIEETTSDYDREKL 365 (541)
T ss_pred ccCCCCCcCcCCHHHcCCccEEEEEc--c--------------eEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHHH
Confidence 9 68888888899999998876 2 788999987753
Q ss_pred ----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
.|||+|||+|+.+++|+||.++||++++++++.++ ||+||||+|...
T Consensus 366 ~~ri~~l~g~~~tI~irG~t~~~l~E~er~i~DAl~a~~~al~~g-~VpGGGa~e~~~ 422 (541)
T PRK12851 366 QERLAKLAGGVAVIRVGASTEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (541)
T ss_pred HHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cccCchHHHHHH
Confidence 88999999999999999999999999999999996 999999999853
No 42
>cd03344 GroEL GroEL_like type I chaperonin. Chaperonins are involved in productive folding of proteins. They share a common general morphology, a double toroid of 2 stacked rings, each composed of 7-9 subunits. The symmetry of type I is seven-fold and they are found in eubacteria (GroEL) and in organelles of eubacterial descent (hsp60 and RBP). With the aid of cochaperonin GroES, GroEL encapsulates non-native substrate proteins inside the cavity of the GroEL-ES complex and promotes folding by using energy derived from ATP hydrolysis.
Probab=99.97 E-value=2.5e-30 Score=319.33 Aligned_cols=265 Identities=15% Similarity=0.192 Sum_probs=225.7
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++++||||||+++.+++++|+||..|+.||+.|+...+..+..++...+.. ...-.+.|++++++|+..+
T Consensus 87 TtvviLa~~Ll~~~~~li~~gi~p~~I~~G~~~a~~~~~~~L~~~~~~i~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 166 (520)
T cd03344 87 TTATVLARAIIKEGLKAVAAGANPMDLKRGIEKAVEAVVEELKKLSKPVKTKEEIAQVATISANGDEEIGELIAEAMEKV 166 (520)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999887666665544322210 0122678999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCc-ceEEEeEEEeeccCCCCC-------cceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNE-STFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~d-S~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .|.| .+||+..| +++++|++|++.+.+..| +++++||+|++++++|+. +.
T Consensus 167 ~~~---~-------~i~v--~~g~~~~d~~~~~~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~l~~------~~ 228 (520)
T cd03344 167 GKD---G-------VITV--EEGKTLETELEVVEGMQFDRGYLSPYFVTDPEKMEVELENPYILLTDKKISS------IQ 228 (520)
T ss_pred ccC---C-------cEEE--EeCCCcceeEEEEeeEEecCCCCCCccccCcccCeEEeeCCEEEEECCCCCC------HH
Confidence 642 1 2333 68999999 799999999999988765 468999999999999632 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCc------EEEEcc-----ChHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLNV-----KRPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI------~vi~~V-----k~~~LerIar~TgA~I 214 (1397)
+ +..++++|.+.|++||+++++|++.|+++|.++|| .+++++ ++++|+|||++|||.+
T Consensus 229 ~-----------l~~~l~~i~~~~~~lvi~~~~i~~~al~~l~~~~i~~~~~v~avk~~~~~~~~~~~l~~la~~tGa~~ 297 (520)
T cd03344 229 E-----------LLPILELVAKAGRPLLIIAEDVEGEALATLVVNKLRGGLKVCAVKAPGFGDRRKAMLEDIAILTGGTV 297 (520)
T ss_pred H-----------HHHHHHHHHhhCCCEEEEcCCCCHHHHHHHHHcCCccCceEEEEeCCCCCcccHHHHHHHHHHhCCEE
Confidence 2 44468999999999999999999999999999999 888766 8999999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-------------------------
Q 000605 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1397)
Q Consensus 215 i~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------- 264 (1397)
++ +++.+....||+|+.|++.+ + ++++|+||..+
T Consensus 298 ~~~~~~~~~~~~~~~~LG~~~~v~~~~--~--------------~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 361 (520)
T cd03344 298 ISEELGLKLEDVTLEDLGRAKKVVVTK--D--------------DTTIIGGAGDKAAIKARIAQIRKQIEETTSDYDKEK 361 (520)
T ss_pred ecccccCCcccCCHHHCCcceEEEEee--c--------------eEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99 88888888999999999875 2 68899999765
Q ss_pred ----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
..|||+|||+|+.+++|++|.++||++++++++.++ +||||||+|...
T Consensus 362 l~eR~~~l~~~~~TI~irG~t~~~l~E~~r~i~Dal~~~k~a~~~g-~VpGGGa~e~~~ 419 (520)
T cd03344 362 LQERLAKLSGGVAVIKVGGATEVELKEKKDRVEDALNATRAAVEEG-IVPGGGVALLRA 419 (520)
T ss_pred HHHHHHHhcCCeEEEEEecCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCCcHHHHHH
Confidence 599999999999999999999999999999999996 999999999853
No 43
>PTZ00114 Heat shock protein 60; Provisional
Probab=99.97 E-value=2.4e-30 Score=321.83 Aligned_cols=265 Identities=14% Similarity=0.155 Sum_probs=227.8
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+|||+||++|..++++|+||..|+.||.+|+...+..+.+++...+.. ...+.+.|++++++|+..+
T Consensus 101 TtvvvLa~~LL~~a~~li~~GihP~~I~~G~~~A~~~~~~~L~~~s~~v~~~~~l~~va~ts~~~~~~l~~li~eAv~~v 180 (555)
T PTZ00114 101 TTATILARAIFREGCKAVAAGLNPMDLKRGIDLAVKVVLESLKEQSRPVKTKEDILNVATISANGDVEIGSLIADAMDKV 180 (555)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999887766665544332210 0134678999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcc-eEEEeEEEeeccCCCC-------CcceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS-~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .|.+++||+..|| ++++|++|++.+.++. |++.++||+||+++++|+. +.
T Consensus 181 g~~---g---------~I~~~~g~~~~ds~~~v~G~~~~~g~~~~~~~~~~~~~~~~l~~~~Ili~d~~L~~------~~ 242 (555)
T PTZ00114 181 GKD---G---------TITVEDGKTLEDELEVVEGMSFDRGYISPYFVTNEKTQKVELENPLILVTDKKISS------IQ 242 (555)
T ss_pred CcC---C---------cEEEcCCCCccceEEEEEEEEEeccccccccccccccCeEEecCCEEEEEcCCCCC------HH
Confidence 642 1 2889999999999 8999999999999886 5899999999999999982 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcC------cEEEEc-----cChHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKE------ISLVLN-----VKRPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~g------I~vi~~-----Vk~~~LerIar~TgA~I 214 (1397)
.+..++++|.+.|++||+++++|++.|+++|..++ |+++++ +++.+|+|||++|||.+
T Consensus 243 -----------~i~~~le~i~~~~~~llI~~~~i~~~al~~L~~n~~~g~~~i~avk~~~~g~~~~~~l~~la~~tG~~~ 311 (555)
T PTZ00114 243 -----------SILPILEHAVKNKRPLLIIAEDVEGEALQTLIINKLRGGLKVCAVKAPGFGDNRKDILQDIAVLTGATV 311 (555)
T ss_pred -----------HHHHHHHHHHHhCCCEEEECCCCcHHHHHHHHHhCCCCceEEEEEecCCCCcchHHHHHHHHHHhCCEE
Confidence 25566789999999999999999999999999996 999977 78899999999999999
Q ss_pred cccc------ccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCC--------------------------
Q 000605 215 TPSI------DNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCP-------------------------- 262 (1397)
Q Consensus 215 i~s~------d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~-------------------------- 262 (1397)
+++. +++++..||+|+.|++.+ + .+++|+||.
T Consensus 312 i~~~~~~~~l~~~~~~~LG~a~~v~~~~--~--------------~~~~~~~~~~~~~i~~r~~~l~~~~~~~~~~~~~~ 375 (555)
T PTZ00114 312 VSEDNVGLKLDDFDPSMLGSAKKVTVTK--D--------------ETVILTGGGDKAEIKERVELLRSQIERTTSEYDKE 375 (555)
T ss_pred ecccccccCcccCCHHHcCCCceEEEEe--c--------------eEEEEeCCCcHHHHHHHHHHHHHHHHhcCCHHHHH
Confidence 9998 777778899999999987 2 355666665
Q ss_pred ---------CCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 263 ---------RRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 263 ---------~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
.+..|||+|||+|+.+++|++|.++||++++++++.++ ||+||||+|...
T Consensus 376 ~l~eR~~~l~~~~~tI~i~G~t~~~l~E~~r~i~Dal~~~k~a~~~g-vVpGGGa~e~~~ 434 (555)
T PTZ00114 376 KLKERLAKLSGGVAVIKVGGASEVEVNEKKDRIEDALNATRAAVEEG-IVPGGGVALLRA 434 (555)
T ss_pred HHHHHHHhcCCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-cccCCcHHHHHH
Confidence 56899999999999999999999999999999999976 999999999853
No 44
>TIGR02348 GroEL chaperonin GroL. This family consists of GroEL, the larger subunit of the GroEL/GroES cytosolic chaperonin. It is found in bacteria, organelles derived from bacteria, and occasionally in the Archaea. The bacterial GroEL/GroES group I chaperonin is replaced a group II chaperonin, usually called the thermosome in the Archaeota and CCT (chaperone-containing TCP) in the Eukaryota. GroEL, thermosome subunits, and CCT subunits all fall under the scope of Pfam model pfam00118.
Probab=99.97 E-value=3.1e-30 Score=319.10 Aligned_cols=265 Identities=17% Similarity=0.205 Sum_probs=226.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++++||||||++|..++++|+||..|+.||.+|+...+..+.+++...+.. ...+.+.|++++++|+..+
T Consensus 88 TtvviLa~~Ll~~a~~li~~GihP~~Ii~G~~~A~~~~l~~L~~~s~~~~~~~~l~~va~ts~~~~~~l~~lv~~A~~~v 167 (524)
T TIGR02348 88 TTATVLAQAIVKEGLKNVAAGANPIELKRGIEKAVEAAVEELKKLSKPVKGKKEIAQVATISANNDEEIGSLIAEAMEKV 167 (524)
T ss_pred chHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999988777766655433210 1245788999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCC-CcceEEEeEEEeeccCCCCC-------cceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~-~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .|.|++ ||.. .+|++++|++|++.+.+..| ++.++||+||++++.|+- ..
T Consensus 168 ~~~---~-------~i~v~~--g~~~~~~s~~v~G~~~~~g~~~~~~~~~~~~~~~~~~n~~Ili~d~~i~~------~~ 229 (524)
T TIGR02348 168 GKD---G-------VITVEE--SKSLETELEVVEGMQFDRGYISPYFVTDAEKMEVELENPYILITDKKISN------IK 229 (524)
T ss_pred CcC---C-------cEeeec--CCCccccEEEEEeEEEcCCCCCcccccCccCCeEEeeCceeeeccCCcCC------HH
Confidence 652 1 233443 6666 67999999999999998865 899999999999996541 12
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHc------CcEEEEccCh-----HHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVKR-----PLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------gI~vi~~Vk~-----~~LerIar~TgA~I 214 (1397)
+ +..++++|.+.|++||+++++|++.|+++|..+ ||++|++++. .+|+|||++|||.+
T Consensus 230 ~-----------i~~~l~~i~~~g~~lvi~~~~i~~~al~~l~~n~~~~~~~i~avr~~~~~~~r~~~l~~ia~~tG~~~ 298 (524)
T TIGR02348 230 D-----------LLPLLEKVAQSGKPLLIIAEDVEGEALATLVVNKLRGTLNVCAVKAPGFGDRRKAMLEDIAILTGGQV 298 (524)
T ss_pred H-----------HHHHHHHHHHhCcCEEEECCCCChHHHHHHHHhhcccccceEEEECCCccchhhhhHHHHHHHhCCEE
Confidence 1 477789999999999999999999999999987 8999988855 89999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc------------------------
Q 000605 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------ 265 (1397)
Q Consensus 215 i~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------ 265 (1397)
++ +++++++..||+|+.|++.. +++++|+||..+.
T Consensus 299 i~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~~~~~~~~~~~ri~~l~~~~~~~~~~~~~~~ 362 (524)
T TIGR02348 299 ISEELGLKLEEVTLDDLGKAKKVTVDK----------------DNTTIVEGAGDKAAIKARVAQIKAQIEETTSDYDREK 362 (524)
T ss_pred ecccccCCcCcCCHHHCCCceEEEEee----------------cEEEEEcCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 99 89999999999999998764 2789999987654
Q ss_pred -----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 266 -----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 266 -----------gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
.+||+|||+|..+++|++|.++||++++++++.++ |||||||+|.+.
T Consensus 363 l~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~Dal~~~r~a~~~g-~VpGGGa~e~~~ 420 (524)
T TIGR02348 363 LQERLAKLAGGVAVIKVGAATETEMKEKKLRVEDALNATRAAVEEG-IVPGGGVALLRA 420 (524)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 68999999999999999999999999999999996 999999999854
No 45
>PRK12850 groEL chaperonin GroEL; Reviewed
Probab=99.97 E-value=2.5e-29 Score=311.84 Aligned_cols=266 Identities=15% Similarity=0.185 Sum_probs=224.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++++||||||++|..++++|+||..|+.||++|+...+..+.+.+...+.. ...-.+.|++++++|+..+
T Consensus 90 Tt~viLa~~LL~~a~~li~~GihP~~I~~G~~~a~~~~~~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~lv~eAv~~v 169 (544)
T PRK12850 90 TTATVLAQAIVREGAKLVAAGMNPMDLKRGIDLAVAAVVDELKKIAKKVTSSKEIAQVATISANGDESIGEMIAEAMDKV 169 (544)
T ss_pred chHHHHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHhcCCHHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999887666655544322210 0122578999999999998
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCC-------cceecCccEEEEeeecccccCcCCHHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLAS 146 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Ley~r~~~~~~s 146 (1397)
.++ +.+|+ +..+..| .++++++|++|++.+.++.| ++.++||+||++++.|+-
T Consensus 170 g~~----g~i~v----~~~~~~g---~~~~~v~G~~~~~g~~~p~~~~~~~~~~~~~~n~~Ill~d~~i~~--------- 229 (544)
T PRK12850 170 GKE----GVITV----EEAKTLG---TELDVVEGMQFDRGYLSPYFVTNPEKMRAELEDPYILLHEKKISN--------- 229 (544)
T ss_pred ccc----Cceee----EEccccC---cceEEEEeEEecCccCcCccccccccCeEEEeCCEEEEEecccCC---------
Confidence 642 23444 2223444 68999999999999999765 899999999999996521
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCc------EEEEc-----cChHHHHHHHHHhCCeEc
Q 000605 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEI------SLVLN-----VKRPLLERIARCTGALIT 215 (1397)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI------~vi~~-----Vk~~~LerIar~TgA~Ii 215 (1397)
+ +.+..++++|.+.|++||+++++|++.|+++|.++|| ++|++ +++.+|+|||++|||.++
T Consensus 230 ~--------~~i~~~l~~i~~~g~~lvI~~~~I~d~al~~l~~n~i~~~~~~~avk~p~~g~~~~~~le~ia~~tG~~~i 301 (544)
T PRK12850 230 L--------QDLLPILEAVVQSGRPLLIIAEDVEGEALATLVVNKLRGGLKSVAVKAPGFGDRRKAMLEDIAVLTGGQVI 301 (544)
T ss_pred H--------HHHHHHHHHHHHhCCCEEEECCCCChHHHHHHHHcCCcccceEEEEeCCCcCcccHHHHHHHHHHhCCEEe
Confidence 1 2277789999999999999999999999999999999 99888 999999999999999999
Q ss_pred c-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCCc-------------------------
Q 000605 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRL------------------------- 265 (1397)
Q Consensus 216 ~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~~------------------------- 265 (1397)
+ +++++++..||+|+.|++.. +++++|+||..+.
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~l 365 (544)
T PRK12850 302 SEDLGIKLENVTLDMLGRAKRVLITK----------------ENTTIIDGAGDKKNIEARVKQIRAQIEETTSDYDREKL 365 (544)
T ss_pred ccccCCCcccCCHHHcCCCcEEEEEe----------------eeEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 9 78888888999999998774 2688999998753
Q ss_pred ----------eeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 266 ----------GCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 266 ----------gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
.|||+|||+|+.+++|+||.++||++++++++.++ ||+||||+|...
T Consensus 366 ~eR~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~~~k~a~~~g-~VpGGGa~e~~~ 422 (544)
T PRK12850 366 QERLAKLAGGVAVIRVGGATEVEVKEKKDRVDDALHATRAAVEEG-IVPGGGVALLRA 422 (544)
T ss_pred HHHHHHhcCCeEEEEECCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CccCCcHHHHHH
Confidence 89999999999999999999999999999999994 999999999853
No 46
>PRK12852 groEL chaperonin GroEL; Reviewed
Probab=99.96 E-value=9.8e-29 Score=307.16 Aligned_cols=265 Identities=18% Similarity=0.200 Sum_probs=224.5
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCCh---------hhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSE---------EDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~~---------~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+||||||++|..++++|+||..|+.||.+|+...+..+.+.+...+... ..-.+.|++|+++|+..|
T Consensus 90 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~~~~~l~~va~~s~~~~~~l~~li~eA~~~v 169 (545)
T PRK12852 90 TTATVLAQAIVREGAKAVAAGMNPMDLKRGIDIAVAAVVKDIEKRAKPVASSAEIAQVGTISANGDAAIGKMIAQAMQKV 169 (545)
T ss_pred chHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHhhhcCChHHHHHHHHHHHHHh
Confidence 68899999999999999999999999999999998877666655443322110 011477999999999998
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCC-CcceEEEeEEEeeccCCCC-------CcceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKR-------MTSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~-~dS~lI~GvV~~K~~a~k~-------Mp~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .|.|. .||.. .++++++|++|++...+.. |+..++||+||++++.|.. +
T Consensus 170 g~~----g------~i~v~--~g~~~~~~~~~v~G~~~~~g~~~p~~v~~~~~~~~~l~n~~Ili~d~~i~~------~- 230 (545)
T PRK12852 170 GNE----G------VITVE--ENKSLETEVDIVEGMKFDRGYLSPYFVTNAEKMTVELDDAYILLHEKKLSG------L- 230 (545)
T ss_pred ccC----C------ceeee--cCCCcceEEEEEEeEEecCCccCCccccccccceEEecCceEEEecCccCC------H-
Confidence 653 1 23333 28776 7999999999999999874 9999999999999875421 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHc------CcEEEEccC-----hHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAK------EISLVLNVK-----RPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~------gI~vi~~Vk-----~~~LerIar~TgA~I 214 (1397)
+++..+++.|.+.+++||+++++|++.|+++|..+ ||++|++.+ +.+|+|||++|||.+
T Consensus 231 ----------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~nk~~~~~~i~av~~~~~~~~r~~~l~~ia~~tGa~~ 300 (545)
T PRK12852 231 ----------QAMLPVLEAVVQSGKPLLIIAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLEDIAILTGGQL 300 (545)
T ss_pred ----------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHHhcccccceEEEEecCCcccchHhHHHHHHHhcCCEE
Confidence 36677889999999999999999999999999886 899999666 999999999999999
Q ss_pred cc-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-------------------------
Q 000605 215 TP-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1397)
Q Consensus 215 i~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------- 264 (1397)
++ ++++++...||+|+.|++.+ + .+++|+||..+
T Consensus 301 i~~~~~~~l~~~~~~~lG~~~~v~~~~--~--------------~~~~i~~~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (545)
T PRK12852 301 ISEDLGIKLENVTLKMLGRAKKVVIDK--E--------------NTTIVNGAGKKADIEARVGQIKAQIEETTSDYDREK 364 (545)
T ss_pred EecCcCCCcCCCCHHHCCCCcEEEEEc--c--------------EEEEEeCCCCHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 99 78888888999999998876 2 57889988763
Q ss_pred ----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
..|||+|||+|+.+++|+||.++||++++++++.++ |||||||+|...
T Consensus 365 l~~R~~~l~~~~~tI~irG~t~~~l~E~er~i~DAl~a~~~a~~~g-~VpGGGa~e~~~ 422 (545)
T PRK12852 365 LQERLAKLAGGVAVIRVGGATEVEVKEKKDRVEDALNATRAAVQEG-IVPGGGVALLRA 422 (545)
T ss_pred HHHHHHHhCCCeEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHhcC-CCcCchHHHHHH
Confidence 789999999999999999999999999999999995 999999999853
No 47
>CHL00093 groEL chaperonin GroEL
Probab=99.96 E-value=3.2e-28 Score=301.60 Aligned_cols=267 Identities=17% Similarity=0.181 Sum_probs=219.2
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+||||||++|..++++|+||..|+.||++|+...+..+..++...... ...+.+.|++|+++|+..|
T Consensus 89 TtvvvLa~eLL~~a~~li~~Gi~P~~I~~G~~~A~~~~l~~L~~~s~~v~d~~~L~~VA~ts~~~~~~l~~lv~eAv~~v 168 (529)
T CHL00093 89 TTATVLAYAIVKQGMKNVAAGANPISLKRGIEKATQYVVSQIAEYARPVEDIQAITQVASISAGNDEEVGSMIADAIEKV 168 (529)
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHhccChHHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999887666655544332210 1246788999999999998
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCC---cc----eecCccEEEEeeecccccCcCCHHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRM---TS----QYRNPRLLILGGALEYQRVPNQLAS 146 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~M---p~----~i~nprIlll~~~Ley~r~~~~~~s 146 (1397)
.++ + .+|+ + -.+|...++++++|++|++...++.| ++ .++||+||+++++|++.+
T Consensus 169 g~~---g-~i~~------~-~g~~~~~~~~~v~G~~~~~g~~~p~fv~~~k~~~~~l~n~~Ili~d~~le~~~------- 230 (529)
T CHL00093 169 GRE---G-VISL------E-EGKSTVTELEITEGMRFEKGFISPYFVTDTERMEVVQENPYILLTDKKITLVQ------- 230 (529)
T ss_pred ccC---C-ceee------c-CCCccceeeEEEeeEEecCccCcCccccCCccceEEecCceehhhcCCCCchH-------
Confidence 642 1 2333 1 13345677899999999999998764 44 599999999999999753
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHH--HH----cCcEEEEccC-----hHHHHHHHHHhCCeEc
Q 000605 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLL--LA----KEISLVLNVK-----RPLLERIARCTGALIT 215 (1397)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L--~~----~gI~vi~~Vk-----~~~LerIar~TgA~Ii 215 (1397)
..+..++++|.+.++++|+++++|++.|+..| .+ +||+++++++ +.+|+|||++|||.++
T Consensus 231 ---------~~i~~~l~~i~~~~~~lvi~~~~i~~~al~~l~l~k~~g~~~i~avr~~~~~~~~k~~l~~ia~~tGa~~i 301 (529)
T CHL00093 231 ---------QDLLPILEQVTKTKRPLLIIAEDVEKEALATLVLNKLRGIVNVVAVRAPGFGDRRKAMLEDIAILTGGQVI 301 (529)
T ss_pred ---------HHHHHHHHHHHhcCCCEEEEcCCCChHHHHHHHHhhhcccceEEEEecCCCCcchHHHHHHHHHhhCCEEe
Confidence 23778889999999999999999999665554 77 5999999984 4889999999999999
Q ss_pred c-----ccccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEc---------CCCC-----------------
Q 000605 216 P-----SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEG---------CPRR----------------- 264 (1397)
Q Consensus 216 ~-----s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~g---------c~~~----------------- 264 (1397)
+ +++++++..||+|+.+++.. +++++|++ |...
T Consensus 302 ~~~~~~~~~~~~~~~LG~~~~v~~~~----------------~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~l~ 365 (529)
T CHL00093 302 TEDAGLSLETIQLDLLGQARRIIVTK----------------DSTTIIADGNEEQVKARCEQLRKQIEIADSSYEKEKLQ 365 (529)
T ss_pred cccccCCcCCCCHHHCCcceEEEEec----------------CEEEEEecCcHHHHHHHHHHHHHHhhhcCCHHHHHHHH
Confidence 9 78899888999999999874 26777775 3321
Q ss_pred --------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 265 --------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 265 --------~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
..|||+|||+|+.+++|.||.++||++++++++.++ +||||||+|...
T Consensus 366 eR~~~l~g~~~~I~irg~t~~~l~E~er~i~DAl~a~r~a~~~g-vVpGGGa~e~~~ 421 (529)
T CHL00093 366 ERLAKLSGGVAVIKVGAATETEMKDKKLRLEDAINATKAAVEEG-IVPGGGATLVHL 421 (529)
T ss_pred HHHHHhcCCeEEEEeccCcHHHHHHHHHHHHHHHHHHHHHHHcC-cccCCcHHHHHH
Confidence 378899999999999999999999999999999996 999999999853
No 48
>PRK14104 chaperonin GroEL; Provisional
Probab=99.95 E-value=2.5e-27 Score=293.76 Aligned_cols=265 Identities=15% Similarity=0.160 Sum_probs=220.4
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC---------hhhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS---------EEDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~---------~~~w~~~l~~l~~~a~~~v 73 (1397)
|++|+|||+||+++.+++++|+||..|+.||.+|+...+..+...+...+.. .....+.|++++++|+..|
T Consensus 90 TTvvvLa~~LL~~a~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~a~~v~~~~~l~~va~~s~~~d~~i~~lv~~Av~~v 169 (546)
T PRK14104 90 TTATVLAQAIVREGAKSVAAGMNPMDLKRGIDLAVEAVVADLVKNSKKVTSNDEIAQVGTISANGDAEIGKFLADAMKKV 169 (546)
T ss_pred cHHHHHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhcCchHHHHHHHHHHHHh
Confidence 6889999999999999999999999999999999886655554433222111 0123466999999999988
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCC-CcceEEEeEEEeeccCCCCC-------cceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSP-NESTFIKGVVCTKNIKHKRM-------TSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~-~dS~lI~GvV~~K~~a~k~M-------p~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ + .|.|..+ +.. .++++++|++|++.+.++.| +..++||+|++.+.. +.
T Consensus 170 g~~----g------~i~v~~~--~~~~~~~~~~~G~~~~~g~~~p~~~~~~~~~~~~~~~~~Ilv~d~~---------i~ 228 (546)
T PRK14104 170 GNE----G------VITVEEA--KSLETELDVVEGMQFDRGYISPYFVTNADKMRVEMDDAYILINEKK---------LS 228 (546)
T ss_pred ccC----C------ceeeEec--ccccceEEEEEEEEEeCCCCCcchhcCcccCceeeeCcEEEEehhh---------hc
Confidence 642 1 3445443 445 58999999999999998855 788999999999833 22
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHH------cCcEEEEccC-----hHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLA------KEISLVLNVK-----RPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~------~gI~vi~~Vk-----~~~LerIar~TgA~I 214 (1397)
++ +.+..++++|.+.|++||+++++|++.|+++|.. .||.+|++++ +.+|+|||.+|||.+
T Consensus 229 ~~--------~~i~~~l~~i~~~g~~lvI~~~~i~~~al~~l~~Nk~~~~~~i~av~~~~~g~~r~~~l~~ia~~tG~~~ 300 (546)
T PRK14104 229 SL--------NELLPLLEAVVQTGKPLVIVAEDVEGEALATLVVNRLRGGLKVAAVKAPGFGDRRKAMLQDIAILTGGQA 300 (546)
T ss_pred CH--------HHHHHHHHHHHHhCcCEEEECCCCcHHHHHHHHhCcccceeeEEEEeccCCCcchHHHHHHHHHHhCCEE
Confidence 22 2266789999999999999999999999999984 6899998887 899999999999999
Q ss_pred ccc-----cccCCCCCcceeeeEEEEEeccccccccccCCCCCceEEEEEcCCCC-------------------------
Q 000605 215 TPS-----IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRR------------------------- 264 (1397)
Q Consensus 215 i~s-----~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~~Kt~i~f~gc~~~------------------------- 264 (1397)
+++ +++++...||+|+.+++ +. +.+++++||..+
T Consensus 301 i~~~~~~~l~~~~~~~LG~a~~v~~---~~-------------~~~~~i~g~~~~~~i~~ri~~l~~~~~~~~~~~~~~~ 364 (546)
T PRK14104 301 ISEDLGIKLENVTLQMLGRAKKVMI---DK-------------ENTTIVNGAGKKADIEARVAQIKAQIEETTSDYDREK 364 (546)
T ss_pred EecCCCCCcCcCCHHHCCceeEEEE---cC-------------CEEEEEeCCCCHHHHHHHHHHHHHHHHhcCCHHHHHH
Confidence 999 88898889999999875 32 378889999875
Q ss_pred ----------ceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 265 ----------LGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 265 ----------~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
..|||+|||+|+.+++|+||.++||++++++++.++ ||+|||++|...
T Consensus 365 l~eRi~~l~~~~atI~irG~t~~~l~e~~r~i~Dal~a~~~ai~~g-~VpGGGa~e~~~ 422 (546)
T PRK14104 365 LQERLAKLAGGVAVIRVGGATEVEVKERKDRVDDAMHATRAAVEEG-IVPGGGVALLRA 422 (546)
T ss_pred HHHHHHHhcCCeEEEEecCCCHHHHHHHHHHHHHHHHHHHHHHHcC-cCcCchHHHHHH
Confidence 899999999999999999999999999999999996 999999999854
No 49
>PLN03167 Chaperonin-60 beta subunit; Provisional
Probab=99.95 E-value=7.6e-28 Score=299.99 Aligned_cols=276 Identities=17% Similarity=0.183 Sum_probs=224.9
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCC--------hhhHHHHHHHHHHHHhhccC
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDS--------EEDWLGIITTIAWQAANFVK 74 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~--------~~~w~~~l~~l~~~a~~~v~ 74 (1397)
|++++||++||+++.+++++|+||..|+.||.+|+...+..+..++...+.. ...+.+.|++|+++|+..|.
T Consensus 145 TTvvVLa~~LL~ea~~li~~Gi~P~~I~~G~~~A~~~~~~~L~~~s~~v~d~~L~~vA~tS~~~~~~i~~liaeAv~~Vg 224 (600)
T PLN03167 145 TTSVVLAQGLIAEGVKVVAAGANPVQITRGIEKTAKALVKELKKMSKEVEDSELADVAAVSAGNNYEVGNMIAEAMSKVG 224 (600)
T ss_pred cHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHhccCcHHHHHHHHHHHHHhc
Confidence 6889999999999999999999999999999999887666665543322110 11345689999999999986
Q ss_pred cCCCCCCCCCcCCceEEEEccCCCCCcc-eEEEeEEEeeccCCC-------CCcceecCccEEEEeeecccccCcCCHHH
Q 000605 75 PDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKHK-------RMTSQYRNPRLLILGGALEYQRVPNQLAS 146 (1397)
Q Consensus 75 ~~~~~~~~~Di~~~VkIkki~GG~~~dS-~lI~GvV~~K~~a~k-------~Mp~~i~nprIlll~~~Ley~r~~~~~~s 146 (1397)
++ + .++ ...||+..|+ ++++|++|++...++ +|+++++||+|||+++.| .+..+
T Consensus 225 ~~---g-~i~--------v~~g~s~~dsl~~v~G~~~d~g~~spyfvt~~~~m~~~l~np~Ill~d~~i------~~~~~ 286 (600)
T PLN03167 225 RK---G-VVT--------LEEGKSAENNLYVVEGMQFDRGYISPYFVTDSEKMSVEYDNCKLLLVDKKI------TNARD 286 (600)
T ss_pred cC---C-cEE--------eccCCCccceeEEEEEEEecCCccCcccccCcCCCeEEEeCCEEEEEcccc------CCHHH
Confidence 42 1 222 2379999998 999999999999988 899999999999999854 23344
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHH------HcCcEEEEccC-----hHHHHHHHHHhCCeEc
Q 000605 147 FNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLL------AKEISLVLNVK-----RPLLERIARCTGALIT 215 (1397)
Q Consensus 147 le~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~------~~gI~vi~~Vk-----~~~LerIar~TgA~Ii 215 (1397)
+.++ ++++...++++|++.++|++.|+++|. ..+|.++++.+ +.+|++||.+|||.++
T Consensus 287 l~~~-----------le~i~~~g~~lvI~a~~I~~~aL~~L~~nkl~g~~~i~aVk~p~~g~~~~~~L~dia~~tGa~~i 355 (600)
T PLN03167 287 LIGI-----------LEDAIRGGYPLLIIAEDIEQEALATLVVNKLRGSLKIAALKAPGFGERKSQYLDDIAILTGGTVI 355 (600)
T ss_pred HHHH-----------HHHHHHhCcCEEEEcCCCCHHHHHHHHHhhccccceEEEEEcccCCcchHHHHHHHHHhhCCEEe
Confidence 4443 347788999999999999999999999 89999999996 8899999999999999
Q ss_pred c-----ccccCCCCCcceeeeEEEEE-----eccccccccccCCCCCceEEEEEcCC------------C------Ccee
Q 000605 216 P-----SIDNISTTRLGHCELFKLEK-----VSEEHETSNQFNKKPSKTLMYFEGCP------------R------RLGC 267 (1397)
Q Consensus 216 ~-----s~d~l~~~~LG~c~~f~v~~-----~~~e~~~~~~~~~~~~Kt~i~f~gc~------------~------~~gc 267 (1397)
+ ++++++...||+|+.+++++ ++++ +.+ ....+++.+|++|. . +.++
T Consensus 356 ~~~~~~~l~~~~~~~LG~a~~v~~~~~~t~iig~~-~~~----~~i~~r~~~i~~~~~~~~~~~~~~~l~~Ri~~l~g~~ 430 (600)
T PLN03167 356 REEVGLSLDKVGKEVLGTAAKVVLTKDTTTIVGDG-STQ----EAVNKRVAQIKNLIEAAEQDYEKEKLNERIAKLSGGV 430 (600)
T ss_pred cccccCCcccCCHHHCceeeEEEEecccceeeCCC-ccH----HHHHHHHHHHHhhhhccCCHHHHHHHHHHHhhcCCcE
Confidence 9 78888888999999999987 5531 000 01225677888774 1 2367
Q ss_pred EEE-eccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccccc
Q 000605 268 MVL-LRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 268 TIl-LRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
||| |||+|+.+++|+||.++||++++++++.++ +|+|||++|...
T Consensus 431 aiI~vgG~t~~~l~E~er~i~DAl~avk~ai~~g-vVpGGGa~el~l 476 (600)
T PLN03167 431 AVIQVGAQTETELKEKKLRVEDALNATKAAVEEG-IVVGGGCTLLRL 476 (600)
T ss_pred EEEEecCCcHHHHHHHHHHHHHHHHHHHHHHhcC-CCccHHHHHHHH
Confidence 887 999999999999999999999999999999 999999999854
No 50
>KOG0357 consensus Chaperonin complex component, TCP-1 epsilon subunit (CCT5) [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=2.6e-24 Score=237.47 Aligned_cols=194 Identities=18% Similarity=0.239 Sum_probs=180.6
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHHHHHHhCCCCcccCChhhHHHHHHHHHHHHhhccCcCCCCCCC
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIKLGKEDSEEDWLGIITTIAWQAANFVKPDTSRGGS 82 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~~~sk~~~~~w~~~l~~l~~~a~~~v~~~~~~~~~ 82 (1397)
|.+|+|||.++..++.++..|+||-.|.+||..+...++..+..++- .-+
T Consensus 94 TgVvvLa~alleqa~~li~~~ihpiki~~g~e~~~~~av~~l~~i~~-----~~e------------------------- 143 (400)
T KOG0357|consen 94 TGVVVLAGALLEQAHELIDRGIHPIKIAQGYEKAKVVAVEHLDEISD-----PFE------------------------- 143 (400)
T ss_pred cccEEecccchHhHHhhcccccchhHHHHhhhhHHHhhhhhhhhhcc-----ccc-------------------------
Confidence 56799999999999999999999999999999998877776666541 000
Q ss_pred CCcCCceEEEEccCCCCCcceEEEeEEEeeccCCCCCcceecCccEEEEeeecccccCcCCHHHHHHHHHHHHHHHHHHH
Q 000605 83 MDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVPNQLASFNTLLQQENDHLKMVI 162 (1397)
Q Consensus 83 ~Di~~~VkIkki~GG~~~dS~lI~GvV~~K~~a~k~Mp~~i~nprIlll~~~Ley~r~~~~~~sle~ii~qE~e~L~~~V 162 (1397)
+..++
T Consensus 144 ---------------------------------------------------------------------------f~emi 148 (400)
T KOG0357|consen 144 ---------------------------------------------------------------------------FEEMI 148 (400)
T ss_pred ---------------------------------------------------------------------------HHHHH
Confidence 67788
Q ss_pred HHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEccccccCCCCCcceeeeEEEEEeccccc
Q 000605 163 SKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHE 242 (1397)
Q Consensus 163 ~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii~s~d~l~~~~LG~c~~f~v~~~~~e~~ 242 (1397)
+.|+..|+++++|||+.++.|.++|.+++..+++||...+||-||-+||+.|++.+.+|++.+||+|+++++..|+..
T Consensus 149 ~~vK~~ga~l~icqwgfddeanhll~~n~lpavrwVGGpEiEliAiaT~grIVprF~eL~~~kLG~aglVrE~sfgtt-- 226 (400)
T KOG0357|consen 149 QQIKETGANLAICQWGFDDEANHLLLQNNLPAVRWVGGPEIELIAIATGGRIVPRFSELTAEKLGFAGLVREISFGTT-- 226 (400)
T ss_pred HHHHhhCCcEEEEecccCchhhhHHhhcCCCceeecCCcceEEEEeecCCeeeccHhhhCHhhccccceEEEEecccc--
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999999863
Q ss_pred cccccCCCCCceEEEEEcCCCCceeEEEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCccccc
Q 000605 243 TSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLPK 312 (1397)
Q Consensus 243 ~~~~~~~~~~Kt~i~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~~ 312 (1397)
.++++++|.|++++..||.+||+|..+.+|.||++||||||++|++.+.++|.|||+.|..
T Consensus 227 ---------kdkmlviEqc~nskaVTifvRg~Nkmii~EakrslhdalCvirnlird~rivYgGGaaEis 287 (400)
T KOG0357|consen 227 ---------KDKMLVIEQCKNSKAVTIFVRGGNKMIIEEAKRSLHDALCVIRNLIRDNRVVYGGGAAEIS 287 (400)
T ss_pred ---------cceEEEEEecCCCceEEEEEecCcceeHHHHHHHhhhhHHHHHHHhhcCeeEecCchHHhh
Confidence 3689999999999999999999999999999999999999999999999999999999973
No 51
>KOG0356 consensus Mitochondrial chaperonin, Cpn60/Hsp60p [Posttranslational modification, protein turnover, chaperones]
Probab=96.71 E-value=0.012 Score=71.54 Aligned_cols=278 Identities=16% Similarity=0.148 Sum_probs=167.9
Q ss_pred CcceeeechhhHHHHhhhcCCCChHHHHHHHHHHHHHH--HHHHhCCCCcccCCh-------hhHHHHHHHHHHHHhhcc
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSE--LLRAEGIKLGKEDSE-------EDWLGIITTIAWQAANFV 73 (1397)
Q Consensus 3 ~s~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~q--Ll~~~~i~~~sk~~~-------~~w~~~l~~l~~~a~~~v 73 (1397)
|...+||.++..++...+..|..|.++-.|-..+...- .|+..+.++.+..+. ..--..+-++.-+|+..|
T Consensus 103 ttatvlar~i~~eg~~~v~~G~npv~irrGi~~av~~vv~~L~k~sk~Vtt~eeIaqVAtiSAngD~~ig~li~~a~~kv 182 (550)
T KOG0356|consen 103 TTATVLARAIAKEGFEKVAKGANPVEIRRGIMLAVDAVVDELKKMSKPVTTPEEIAQVATISANGDKEIGNLISDAMKKV 182 (550)
T ss_pred chHHHHHHHHHHHHHHHHhccCCchhhhhhHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhhhcCCcHHHHHHHHHHHHHh
Confidence 45678999999999999999999999999988775532 222222232211100 000122334666777777
Q ss_pred CcCCCCCCCCCcCCceEEEEccCCCCCcc-eEEEeEEEeeccCC-------CCCcceecCccEEEEeeecccccCcCCHH
Q 000605 74 KPDTSRGGSMDPGDYVKVKCIAKGSPNES-TFIKGVVCTKNIKH-------KRMTSQYRNPRLLILGGALEYQRVPNQLA 145 (1397)
Q Consensus 74 ~~~~~~~~~~Di~~~VkIkki~GG~~~dS-~lI~GvV~~K~~a~-------k~Mp~~i~nprIlll~~~Ley~r~~~~~~ 145 (1397)
.++ .-|.| ..|....|. +++.|+=|+..... +.+..+++||.+||..-. .++..
T Consensus 183 G~~----------GVItv--~~gkt~~delev~eGmkfdrGyiSPyfi~~~k~~~~e~e~~~~ll~~kk------i~~v~ 244 (550)
T KOG0356|consen 183 GRK----------GVITV--KDGKTLEDELEVIEGMKFDRGYISPYFITSSKKQKVEFENALLLLSEKK------ISSVQ 244 (550)
T ss_pred CcC----------CeEEe--ecCCccccchhhhhcccccccccCccccccchhhhhhhhhhhhhhhhhh------hhHHH
Confidence 642 11222 235555443 67888888877664 345566788888875422 12233
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEE-----------EccChHHHHHHHHHhCCeE
Q 000605 146 SFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLV-----------LNVKRPLLERIARCTGALI 214 (1397)
Q Consensus 146 sle~ii~qE~e~L~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi-----------~~Vk~~~LerIar~TgA~I 214 (1397)
++-+.++ .......| +|+.-..|+..|+..|.=.+--+. .+-+...+..||-+|||.+
T Consensus 245 ~ivp~LE----------~A~~~~~P-LliIAeDi~~eaL~tLIlNkLk~glqV~AvKapgfGdnrk~~l~Diai~Tg~~v 313 (550)
T KOG0356|consen 245 SIVPALE----------LALAKRRP-LLIIAEDIDGEALATLVLNKLKGGLQVVAVKAPGFGDNRKNLLKDIAILTGATV 313 (550)
T ss_pred HHhHHHH----------HhhhccCc-eEEEehhcchhHHHHHHhhhhccceeEEEEecCCCcchHHHhhhHHHHHhhhhh
Confidence 3333222 22233455 555566799999888865443332 3345677999999999988
Q ss_pred cc------ccccCCCCCcceeeeEEEEEeccccccccccCCCC-------Cc------eEEEEEc-CC------CCceeE
Q 000605 215 TP------SIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKP-------SK------TLMYFEG-CP------RRLGCM 268 (1397)
Q Consensus 215 i~------s~d~l~~~~LG~c~~f~v~~~~~e~~~~~~~~~~~-------~K------t~i~f~g-c~------~~~gcT 268 (1397)
+. +++......||.|+.+.+..-.. ..+.+.+++.. -| +..+-.. .. .....+
T Consensus 314 ~~~e~~~l~le~~~~~dLG~~~evvvtkd~t-~ll~g~~~~~~v~~rIeqik~~~e~t~~~ye~ekl~er~a~ls~gvav 392 (550)
T KOG0356|consen 314 FGEELSTLNLEDAKLEDLGEVGEVVVTKDDT-MLLKGKGNKAQVEGRIEQIKEMIEETTSDYEKEKLNERLAKLSGGVAV 392 (550)
T ss_pred hccchhhcccccCchhhcCcceeEEEecCcc-eeeCCCCCHHHHHHHHHHHHHHHHhhhhhhhHhHHHHHHHHhcCCeEE
Confidence 74 23344568899999887654221 11111110000 00 0000000 00 124677
Q ss_pred EEeccCCHHHHHHHHHHHHHHHHHHHHhhccCeeecCCCcccc
Q 000605 269 VLLRGKCREELKKVKHVVQYAVFAAYHLSLETSFLADEGATLP 311 (1397)
Q Consensus 269 IlLRG~s~~~L~evkr~l~d~l~v~~~~~le~~~l~ggGa~e~ 311 (1397)
|-+-|.++-++++-|.-+.||+++.+++.. ..++||||+...
T Consensus 393 i~vGg~se~Ev~ekk~rv~dalnat~aave-eGivpGGG~all 434 (550)
T KOG0356|consen 393 IKVGGHSEVEVNEKKDRVEDALNATRAAVE-EGIVPGGGTALL 434 (550)
T ss_pred EEecCcchhhhhhhhhhHHHHHHHHHHHhh-cCcccCCchHHH
Confidence 888899999999999999999999988875 568899999875
No 52
>KOG0230 consensus Phosphatidylinositol-4-phosphate 5-kinase and related FYVE finger-containing proteins [Signal transduction mechanisms]
Probab=96.04 E-value=0.0052 Score=81.62 Aligned_cols=98 Identities=7% Similarity=-0.194 Sum_probs=79.3
Q ss_pred CCCchhhhcccceeeecCcEEEEEEEecCCcCCCCCCCCcEEEEeecccCCCCCCCCCCcceEecccccccccHHHHHHH
Q 000605 524 RSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVMSDAAWGLSFGKFLEL 603 (1397)
Q Consensus 524 ~sC~~pm~~H~r~yvH~~g~i~I~ve~~~~~~lp~~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~mS~~tw~ySFgKfLEL 603 (1397)
..|+.||..|++.++|+.- ...-+.. .+.++++.. .|.||++|..|+. .+-. ++...+|++++|+++|-
T Consensus 660 ~~~~~~~~~~lv~~~es~~--~~~~~s~-~~~~~~l~e-~~~~~~~~~~~k~------~~~~-~~~~~~~~~~~~~~~e~ 728 (1598)
T KOG0230|consen 660 SYSKGPKQNGLVPAHESVL--NDLHEST-LSILSKLPE-TRSGTHEGNEDKG------PGLE-PELANNQNIQRPEETEE 728 (1598)
T ss_pred hhcCchhhccccccccccc--ccccccc-ccccccccc-hhcccchhccccC------cccc-ccccccccccchhhhhh
Confidence 3599999999999999987 2333332 235677654 8999999999996 3666 99999999999999999
Q ss_pred hccCccccCccCCCCCccccceeeecccCCeE
Q 000605 604 SFSNHATANRIASCGHSLQRDCLRYYGFGSMI 635 (1397)
Q Consensus 604 ~F~~~~~~~~~~~C~H~~~rDhvryF~~~~~v 635 (1397)
. +.....+...|.|.+---|.|+| +.++|
T Consensus 729 ~--~s~~~~~~~~HQsilVl~ss~~~-~k~~~ 757 (1598)
T KOG0230|consen 729 Q--SSKDALDPSSHQSILVLFSSRSV-LKGSV 757 (1598)
T ss_pred h--hcccCCCccccceeEEEEeeeee-ccCCc
Confidence 8 44556677899999999999999 98886
No 53
>PF02579 Nitro_FeMo-Co: Dinitrogenase iron-molybdenum cofactor; InterPro: IPR003731 This entry represents several Nif (B, X and Y) proteins, which are involved in the biosynthesis of the iron-molybdenum cofactor (FeMo-co) found in the dinitrogenase enzyme of the nitrogenase complex in nitrogen-fixing bacteria. The nitrogenase complex catalyses the reduction of atmospheric dinitrogen to ammonia, and is composed of an iron metalloprotein (dinitrogenase reductase; homodimer of NifH; IPR000392 from INTERPRO) and a Fe-Mo metalloprotein (dinitrogenase; heterotetramer of NifD and NifK; IPR000318 from INTERPRO). The pathway for the synthesis of the Fe-Mo cofactor involves several proteins, including NifB, NifE, NifH, NifN, NifQ, NifV and NifX. NifB appears to be an iron-sulphur source for FeMo-co biosynthesis, while NifX may be associated with the mature FeMo-co, in particular with the addition of homocitrate during the last step of biosynthesis []. The NifX protein shows sequence similarity with the C terminus of NifB [], as well as to the conserved protein MTH1175 from the archaeon Methanobacterium thermoautotrophicum, which displays a ribonuclease H-like motif of three layers, alpha/beta/alpha, with a single mixed beta-sheet [].; PDB: 2QTD_A 2KLA_A 1EO1_A 1P90_A 1RDU_A 2YX6_D 1O13_A 1T3V_A 2RE2_B 2WFB_A.
Probab=56.76 E-value=32 Score=32.69 Aligned_cols=47 Identities=13% Similarity=0.095 Sum_probs=36.5
Q ss_pred HHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHH
Q 000605 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIAR 208 (1397)
Q Consensus 161 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar 208 (1397)
+++.|...++++|+|. +|..-+...|.++||.++.......=+.|.+
T Consensus 45 ~~~~l~~~~v~~li~~-~iG~~~~~~L~~~gI~v~~~~~~~i~~~l~~ 91 (94)
T PF02579_consen 45 IAKFLAEEGVDVLICG-GIGEGAFRALKEAGIKVYQGAGGDIEEALEA 91 (94)
T ss_dssp HHHHHHHTTESEEEES-CSCHHHHHHHHHTTSEEEESTSSBHHHHHHH
T ss_pred HHHHHHHcCCCEEEEe-CCCHHHHHHHHHCCCEEEEcCCCCHHHHHHH
Confidence 3445666899999885 5899999999999999999866555554444
No 54
>cd01143 YvrC Periplasmic binding protein YvrC. These proteins are predicted to function as initial receptors in ABC transport of metal ions in eubacteria and archaea. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains.
Probab=53.92 E-value=32 Score=37.12 Aligned_cols=51 Identities=31% Similarity=0.413 Sum_probs=36.2
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEE-EEccC--h----HHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISL-VLNVK--R----PLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~v-i~~Vk--~----~~LerIar~TgA 212 (1397)
+++|++++|||||....-..-..+.|.+.||.+ +.... . ..++.+++.+|-
T Consensus 53 ~E~l~~l~PDlii~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~lg~~~g~ 110 (195)
T cd01143 53 VEKIVALKPDLVIVSSSSLAELLEKLKDAGIPVVVLPAASSLDEIYDQIELIGKITGA 110 (195)
T ss_pred HHHHhccCCCEEEEcCCcCHHHHHHHHHcCCcEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 567889999999987665555678899999954 44332 1 346677777765
No 55
>cd00851 MTH1175 This uncharacterized conserved protein belongs to a family of iron-molybdenum cluster-binding proteins that includes NifX, NifB, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=52.79 E-value=32 Score=33.30 Aligned_cols=39 Identities=13% Similarity=0.110 Sum_probs=33.8
Q ss_pred HHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000605 160 MVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1397)
Q Consensus 160 ~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk 199 (1397)
.+++.|...++++|+|. ++..-+.+.|.++||.++.-..
T Consensus 54 ~~~~~l~~~~v~~vi~~-~iG~~~~~~l~~~gI~v~~~~~ 92 (103)
T cd00851 54 KAAEFLADEGVDVVIVG-GIGPRALNKLRNAGIKVYKGAE 92 (103)
T ss_pred HHHHHHHHcCCCEEEeC-CCCcCHHHHHHHCCCEEEEcCC
Confidence 35666677999999995 6999999999999999998776
No 56
>PF07450 HycH: Formate hydrogenlyase maturation protein HycH; InterPro: IPR010005 This family contains the bacterial formate hydrogenlyase maturation protein HycH, which is approximately 140 residues long. This may be required for the conversion of a precursor form of the large subunit of hydrogenlyase 3 into a mature form [].
Probab=49.02 E-value=11 Score=38.64 Aligned_cols=22 Identities=41% Similarity=0.744 Sum_probs=18.3
Q ss_pred CCccccceeeeeecccceeeEeeeecccc
Q 000605 1315 VDVMDYSLLVGVDEERKELVLGIIDFMRQ 1343 (1397)
Q Consensus 1315 ~~imDYSLLvgi~~~~~~~~~GIID~l~~ 1343 (1397)
..||=|||-||-| +|+||||..
T Consensus 24 kqV~yYSLaIGHh-------vGvIDcle~ 45 (131)
T PF07450_consen 24 KQVMYYSLAIGHH-------VGVIDCLEK 45 (131)
T ss_pred hheeEEEeeeccc-------cceEeechh
Confidence 4588899999965 999999854
No 57
>cd01144 BtuF Cobalamin binding protein BtuF. These proteins have been shown to function as initial receptors in ABC transport of vitamin B12 (cobalamin) in eubacterial and some archaeal species. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=47.83 E-value=42 Score=37.76 Aligned_cols=52 Identities=17% Similarity=0.316 Sum_probs=38.8
Q ss_pred HHHHHhcCCcEEEecCCCcHH-HHHHHHHcCcEEEEcc--C----hHHHHHHHHHhCCe
Q 000605 162 ISKIEALRPNVLLVEKSVSSY-AQDLLLAKEISLVLNV--K----RPLLERIARCTGAL 213 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~-A~~~L~~~gI~vi~~V--k----~~~LerIar~TgA~ 213 (1397)
+++|++++||||+....-... ..+.|.+.||.++..- . ...++.|++.+|..
T Consensus 50 ~E~i~~l~PDlIi~~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~lg~~~g~~ 108 (245)
T cd01144 50 LERVLALKPDLVIAWDDCNVCAVVDQLRAAGIPVLVSEPQTLDDILADIRRLGTLAGRP 108 (245)
T ss_pred HHHHHhCCCCEEEEecCCCHHHHHHHHHHcCCcEEEeCCCCHHHHHHHHHHHHHHhCCh
Confidence 567899999999997655444 4888999999876532 1 34478888888874
No 58
>PRK09534 btuF corrinoid ABC transporter substrate-binding protein; Reviewed
Probab=47.71 E-value=38 Score=41.06 Aligned_cols=52 Identities=19% Similarity=0.236 Sum_probs=38.6
Q ss_pred HHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCC
Q 000605 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKR-------PLLERIARCTGA 212 (1397)
Q Consensus 161 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~-------~~LerIar~TgA 212 (1397)
-+++|++++|||||....-.....+.|.+.||.|+.--.. +.++.+++.+|-
T Consensus 111 n~E~Il~l~PDLVi~~~~~~~~~~~~L~~~gi~V~~~~~~~~l~~i~~~i~~lG~i~G~ 169 (359)
T PRK09534 111 NVEAVVGLDPDLVLAPNAVAGDTVTRLREAGITVFHFPAATSIEDVAEKTATIGRLTGN 169 (359)
T ss_pred CHHHHhcCCCCEEEEcCCCchHHHHHHHHCCCeEEEeCCCCCHHHHHHHHHHHHHHhCC
Confidence 4788999999999997655566788899999998654221 345666777665
No 59
>TIGR03659 IsdE heme ABC transporter, heme-binding protein isdE. This family of ABC substrate-binding proteins is observed primarily in close proximity with proteins localized to the cell wall and bearing the NEAT (NEAr Transporter, pfam05031) heme-binding domain. IsdE has been shown to bind heme and is involved in the process of scavenging heme for the purpose of obtaining iron.
Probab=46.04 E-value=37 Score=39.56 Aligned_cols=52 Identities=13% Similarity=0.222 Sum_probs=40.4
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEc-cC-----hHHHHHHHHHhCCe
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLN-VK-----RPLLERIARCTGAL 213 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~-Vk-----~~~LerIar~TgA~ 213 (1397)
+++|++++||+||+....+....+.|.+.||.|+.- .. ...++.+++++|..
T Consensus 84 ~E~I~al~PDlIi~~~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~i~~lg~~~G~~ 141 (289)
T TIGR03659 84 MEKIKSLKPTVVLSVTTLEEDLGPKFKQLGVEATFLNLTSVDGMKKSITELGEKYGRE 141 (289)
T ss_pred HHHHhccCCcEEEEcCcccHHHHHHHHHcCCcEEEEcCCCHHHHHHHHHHHHHHhCCH
Confidence 678999999999998888888889999999987642 21 23477788887763
No 60
>PRK15084 formate hydrogenlyase maturation protein HycH; Provisional
Probab=45.82 E-value=12 Score=38.38 Aligned_cols=22 Identities=41% Similarity=0.721 Sum_probs=18.4
Q ss_pred CCccccceeeeeecccceeeEeeeecccc
Q 000605 1315 VDVMDYSLLVGVDEERKELVLGIIDFMRQ 1343 (1397)
Q Consensus 1315 ~~imDYSLLvgi~~~~~~~~~GIID~l~~ 1343 (1397)
..||=|||-||-| +|+||||..
T Consensus 26 ~qV~yYSLaIGHh-------vGvIDcle~ 47 (133)
T PRK15084 26 QQVMYYSLAIGHH-------VGVIDCLEA 47 (133)
T ss_pred hheeEEEeecccc-------cceEecchh
Confidence 4588899999965 899999854
No 61
>cd00562 NifX_NifB This CD represents a family of iron-molybdenum cluster-binding proteins that includes NifB, NifX, and NifY, all of which are involved in the synthesis of an iron-molybdenum cofactor (FeMo-co) that binds the active site of the dinitrogenase enzyme. This domain is a predicted small-molecule-binding domain (SMBD) with an alpha/beta fold that is present either as a stand-alone domain (e.g. NifX and NifY) or fused to another conserved domain (e.g. NifB) however, its function is still undetermined.The SCOP database suggests that this domain is most similar to structures within the ribonuclease H superfamily. This conserved domain is represented in two of the three major divisions of life (bacteria and archaea).
Probab=43.89 E-value=53 Score=31.63 Aligned_cols=38 Identities=16% Similarity=0.073 Sum_probs=32.8
Q ss_pred HHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC
Q 000605 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK 199 (1397)
Q Consensus 161 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk 199 (1397)
...-+...++++|+|.+ +..-+...|.++||.++.-..
T Consensus 53 ~~~~l~~~~v~~vi~~~-iG~~a~~~l~~~gI~v~~~~~ 90 (102)
T cd00562 53 AARLLALEGCDAVLVGG-IGGPAAAKLEAAGIKPIKAAE 90 (102)
T ss_pred HHHHHHHCCCcEEEEcc-cCccHHHHHHHcCCEEEEcCC
Confidence 44556678999999975 999999999999999998776
No 62
>cd01138 FeuA Periplasmic binding protein FeuA. These proteins have predicted to function as initial receptors in ABC transport of metal ions in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=39.67 E-value=55 Score=36.97 Aligned_cols=50 Identities=14% Similarity=0.273 Sum_probs=35.9
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC----hHHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK----RPLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk----~~~LerIar~TgA 212 (1397)
+++|++++||+||+...... ..+-|.+.|.+++.... .+.++++++.+|.
T Consensus 59 ~E~i~~l~PDlVi~~~~~~~-~~~~l~~~~p~~~~~~~~~~~~~~i~~lg~~~g~ 112 (248)
T cd01138 59 LEKVLELKPDLIIVSSKQEE-NYEKLSKIAPTVPVSYNSSDWEEQLKEIGKLLNK 112 (248)
T ss_pred HHHHhccCCCEEEeCCccHH-HHHHHHhhCCEEEEcCCCCCHHHHHHHHHHHhCc
Confidence 56789999999999877666 67778888876654432 3456666666654
No 63
>PLN02667 inositol polyphosphate multikinase
Probab=39.59 E-value=42 Score=39.49 Aligned_cols=70 Identities=21% Similarity=0.290 Sum_probs=44.7
Q ss_pred ecCCcEEEeccC-----HHHHHHHHHHHHHHHHHHHhhCC--CCCCchhhhhhceEEEEeeecCCCeeEEEEEEEeeccc
Q 000605 1175 SLDERFIIKQVK-----KTELESFEEFAPEYFKYLTDSLN--SRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLF 1247 (1397)
Q Consensus 1175 T~D~rfiiKtis-----~~E~~~f~~~lp~Yf~y~~~~~~--~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf 1247 (1397)
+.|+..|+|-+. ..|+++-..+. .... ....-++++++|...+... .|+ .+||||||-
T Consensus 23 ~~~~g~~~Kp~~~~~rg~rE~~FY~~~~--------~~~~~~~~L~~~~P~y~G~~~~~~~---~~~----~~i~LeDLt 87 (286)
T PLN02667 23 VDDSGRFYKPLQDDSRGEREAAFYESFS--------SDTRVPDHIRRFFPVFHGTQLVEAS---DGS----GLLVLEDLL 87 (286)
T ss_pred EcCCCcEEeccCCcccchHHHHHHHHHh--------ccccchHHHHhhCcccceeEeeccC---CCc----eeEEehHHh
Confidence 447778899997 68887655543 2100 0123578999999887542 233 379999999
Q ss_pred CCCcceeEEeCC
Q 000605 1248 FRRSISRVYDLK 1259 (1397)
Q Consensus 1248 ~~~~i~~~yDLK 1259 (1397)
++..--.+=|||
T Consensus 88 ~g~~~PcVlDlK 99 (286)
T PLN02667 88 AGYTKPCVMDVK 99 (286)
T ss_pred cCCCCCeEEEEE
Confidence 875433445555
No 64
>COG1433 Uncharacterized conserved protein [Function unknown]
Probab=38.95 E-value=91 Score=32.02 Aligned_cols=52 Identities=13% Similarity=0.107 Sum_probs=42.4
Q ss_pred HHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCe
Q 000605 161 VISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGAL 213 (1397)
Q Consensus 161 ~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~ 213 (1397)
+.+-|++.|+|+|+| .+|..-|...|.++||-+..-....+=+.|-....+.
T Consensus 57 ~a~~l~~~gvdvvi~-~~iG~~a~~~l~~~GIkv~~~~~~~V~e~i~~~~~g~ 108 (121)
T COG1433 57 IAELLVDEGVDVVIA-SNIGPNAYNALKAAGIKVYVAPGGTVEEAIKAFLEGE 108 (121)
T ss_pred HHHHHHHcCCCEEEE-CccCHHHHHHHHHcCcEEEecCCCCHHHHHHHHhcCC
Confidence 456678999999988 6799999999999999999988866666666665553
No 65
>PF06296 DUF1044: Protein of unknown function (DUF1044); InterPro: IPR009387 This entry consists of several hypothetical bacterial proteins of unknown function.
Probab=33.07 E-value=1.4e+02 Score=30.59 Aligned_cols=78 Identities=22% Similarity=0.341 Sum_probs=54.5
Q ss_pred EEcCHHHHHHHHHHcCCChHHHHHhhccc---------------ccCc-cCCCCcce----eEEEecCCcEEE-------
Q 000605 1130 TSYFAKQFDSLRKKCCPSGVDFVRSLSRS---------------RKWS-AQGGKSNV----FFAKSLDERFII------- 1182 (1397)
Q Consensus 1130 ~~y~p~~F~~LR~~~~~~~~~y~~Sl~~~---------------~~~~-~sgGKSgs----~F~~T~D~rfii------- 1182 (1397)
.+|-...|..+-+..++++.++...+... .+|. ...||||. .||+..|.-|.+
T Consensus 2 rifkt~~F~r~akk~~~sd~~L~~ai~el~~G~~~adLGGgv~K~Ria~~g~GKsGG~R~I~~~~~~~~~~~l~~y~K~~ 81 (120)
T PF06296_consen 2 RIFKTKWFKRWAKKEGLSDDDLCEAIEELEQGLIDADLGGGVRKKRIARKGKGKSGGYRVIYFFKQEDRIFFLYIYAKNE 81 (120)
T ss_pred ceeecHHHHHHHHHcCCCHHHHHHHHHHHHhCCcccchhccEEEEEeccCCCCCCCceEEEEEEEeCCEEEEEEEEcccc
Confidence 45667899999999999988876654321 1232 35789983 344444444443
Q ss_pred -eccCHHHHHHHHHHHHHHHHHHHhh
Q 000605 1183 -KQVKKTELESFEEFAPEYFKYLTDS 1207 (1397)
Q Consensus 1183 -Ktis~~E~~~f~~~lp~Yf~y~~~~ 1207 (1397)
-.||..|++.|.+++..|.++-.+.
T Consensus 82 ~~nis~~El~~lk~la~~l~~~~~~~ 107 (120)
T PF06296_consen 82 KANISDKELKALKKLAKELLNLSEEQ 107 (120)
T ss_pred cCCCCHHHHHHHHHHHHHHHHhCHHH
Confidence 2468999999999999999887654
No 66
>cd01146 FhuD Fe3+-siderophore binding domain FhuD. These proteins have been shown to function as initial receptors in ABC transport of Fe3+-siderophores in many eubacterial species. They belong to the TroA-like superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA-like protein is comprised of two globular subdomains connected by a long alpha helix and binds its specific ligands in the cleft between these domains.
Probab=32.68 E-value=95 Score=35.24 Aligned_cols=51 Identities=25% Similarity=0.316 Sum_probs=37.0
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC--hH----HHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK--RP----LLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk--~~----~LerIar~TgA 212 (1397)
+++|++++||+|++.........+.|.+.+..++.... .. .++.+++.+|.
T Consensus 58 ~E~i~~l~PDlii~~~~~~~~~~~~l~~~~p~v~~~~~~~~~~~~~~i~~lg~~~g~ 114 (256)
T cd01146 58 LEAIAALKPDLILGSASRHDEIYDQLSQIAPTVLLDSSPWLAEWKENLRLIAKALGK 114 (256)
T ss_pred HHHHHhcCCCEEEeecccchhHHHHHHhhCCEEEecCCCcHHHHHHHHHHHHHHhCc
Confidence 45788999999999888776566677777766666653 33 46677777765
No 67
>cd04743 NPD_PKS 2-Nitropropane dioxygenase (NPD)-like domain, associated with polyketide synthases (PKS). NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=32.35 E-value=1.2e+02 Score=36.40 Aligned_cols=56 Identities=23% Similarity=0.198 Sum_probs=47.0
Q ss_pred HHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 159 KMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 159 ~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
...++-|++.+|.+|+...+.... .+.|.++||.++..|..-..-+.+.-.||+.+
T Consensus 72 ~~~l~vi~e~~v~~V~~~~G~P~~-~~~lk~~Gi~v~~~v~s~~~A~~a~~~GaD~v 127 (320)
T cd04743 72 AAQLAVVRAIKPTFALIAGGRPDQ-ARALEAIGISTYLHVPSPGLLKQFLENGARKF 127 (320)
T ss_pred HHHHHHHHhcCCcEEEEcCCChHH-HHHHHHCCCEEEEEeCCHHHHHHHHHcCCCEE
Confidence 356777888999999999888876 48899999999999988777777888888776
No 68
>PRK03379 vitamin B12-transporter protein BtuF; Provisional
Probab=32.32 E-value=86 Score=36.03 Aligned_cols=50 Identities=20% Similarity=0.296 Sum_probs=34.4
Q ss_pred HHHHHhcCCcEEEecCC-CcHHHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKS-VSSYAQDLLLAKEISLVLNVKR-------PLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~-Vs~~A~~~L~~~gI~vi~~Vk~-------~~LerIar~TgA 212 (1397)
+++|++++||||++..+ -..-..+.|.+.||.++.- .. ..++.+++.+|.
T Consensus 65 ~E~il~l~PDlVi~~~~~~~~~~~~~L~~~gi~v~~~-~~~~~~~~~~~i~~lg~~~g~ 122 (260)
T PRK03379 65 LERIVALKPDLVLAWRGGNAERQVDQLASLGIKVMWV-DATSIEQIANALRQLAPWSPQ 122 (260)
T ss_pred HHHHHhcCCCEEEEecCCCcHHHHHHHHHCCCCEEEe-CCCCHHHHHHHHHHHHHHcCC
Confidence 56789999999998654 3345668899999988764 22 234555555553
No 69
>PF01497 Peripla_BP_2: Periplasmic binding protein; InterPro: IPR002491 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). Most bacterial importers employ a periplasmic substrate-binding protein (PBP) that delivers the ligand to the extracellular gate of the TM domains. These proteins bind their substrates selectively and with high affinity, which is thought to ensure the specificity of the transport reaction. Binding proteins in Gram-negative bacteria are present within the periplasm, whereas those in Gram-positive bacteria are tethered to the cell membrane via the acylation of a cysteine residue that is an integral component of a lipoprotein signal sequence. In planta expression of a high-affinity iron-uptake system involving the siderophore chrysobactin in Erwinia chrysanthemi 3937 contributes greatly to invasive growth of this pathogen on its natural host, African violets []. The cobalamin (vitamin B12) and the iron transport systems share many common attributes and probably evolved from the same origin [, ]. The periplasmic-binding domain is composed of two subdomains, each consisting of a central beta-sheet and surrounding alpha-helices, linked by a rigid alpha-helix. The substrate binding site is located in a cleft between the two alpha/beta subdomains [].; GO: 0005488 binding; PDB: 2X4L_A 1N4A_B 1N2Z_B 1N4D_B 4DBL_J 2QI9_F 3EIW_A 3EIX_A 3MWG_A 3MWF_A ....
Probab=32.21 E-value=1e+02 Score=34.24 Aligned_cols=51 Identities=20% Similarity=0.277 Sum_probs=39.5
Q ss_pred HHHHhcCCcEEEecCCC-cHHHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCCe
Q 000605 163 SKIEALRPNVLLVEKSV-SSYAQDLLLAKEISLVLNVKR-------PLLERIARCTGAL 213 (1397)
Q Consensus 163 ~rI~~~~pnVVlv~k~V-s~~A~~~L~~~gI~vi~~Vk~-------~~LerIar~TgA~ 213 (1397)
++|++++||+||..... .......+.+.||.++.--.. ..++.|++++|..
T Consensus 54 E~i~~l~PDlIi~~~~~~~~~~~~~~~~~~ip~~~~~~~~~~~~~~~~i~~lg~~~g~~ 112 (238)
T PF01497_consen 54 EAILALKPDLIIGSSFYGQSEEIEKLLEAGIPVVVFDSSSPFDDWKEQIRQLGKALGKE 112 (238)
T ss_dssp HHHHHT--SEEEEETTSSCHHHHHHHHHTTSEEEEESSTTCSHHHHHHHHHHHHHHTSH
T ss_pred HHHHhCCCCEEEEeccccchHHHHHHhcccceEEEeecccchHHHHHHHHHHHHhcccH
Confidence 67899999999999998 777888888999988875543 4577788888764
No 70
>PF12226 Astro_capsid_p: Turkey astrovirus capsid protein; InterPro: IPR022027 This family of proteins is found in viruses. Proteins in this family are typically between 241 and 261 amino acids in length. These proteins are capsid proteins from various astrovirus strains. ; PDB: 3TS3_D.
Probab=31.34 E-value=30 Score=36.84 Aligned_cols=51 Identities=24% Similarity=0.373 Sum_probs=29.2
Q ss_pred EEEcCHHH---HHHHHHHcCCChHHHHHhhcccccCccCCCCcceeEEEecCCcEEEecc
Q 000605 1129 VTSYFAKQ---FDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQV 1185 (1397)
Q Consensus 1129 ~~~y~p~~---F~~LR~~~~~~~~~y~~Sl~~~~~~~~sgGKSgs~F~~T~D~rfiiKti 1185 (1397)
++-|+|.- =..|..+..+.|-+=+-|+ .-+.|+-+++||+|.|.||||=--
T Consensus 102 vkkYyP~TTnld~~lK~RlnL~EgDPViS~------GDt~GRRaALFYRtSdEr~ill~S 155 (230)
T PF12226_consen 102 VKKYYPGTTNLDQQLKDRLNLTEGDPVISM------GDTTGRRAALFYRTSDERYILLFS 155 (230)
T ss_dssp EEEB-GGG--S-HHHHHHHT--TT-EEEEE------EETT--EEEEEEETTTTEEEEEEE
T ss_pred hhhcCCCCccHHHHHHHhhccccCCceeee------cCCCCceEEEEEeccCceEEEEEc
Confidence 66788732 2355556555544333232 346799999999999999998543
No 71
>COG1997 RPL43A Ribosomal protein L37AE/L43A [Translation, ribosomal structure and biogenesis]
Probab=30.85 E-value=44 Score=32.11 Aligned_cols=43 Identities=23% Similarity=0.501 Sum_probs=29.4
Q ss_pred ccCCCCCCCCchhhhcccceeeecCcEEEEEEEecCCcCCCCCCCCcEEEEeecccCCCCCCCCCCcceEec
Q 000605 517 FNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAHADGVPPATRRVVM 588 (1397)
Q Consensus 517 ~~~~~~C~sC~~pm~~H~r~yvH~~g~i~I~ve~~~~~~lp~~~~~~I~mWs~C~~C~~~~~~~~~Tp~v~m 588 (1397)
..+.|.||.|+.+ . |++.. .| || .|.+|+...--...||.+++
T Consensus 32 ~~~~~~Cp~C~~~--~---------------VkR~a--------~G-IW---~C~kCg~~fAGgay~P~t~~ 74 (89)
T COG1997 32 QRAKHVCPFCGRT--T---------------VKRIA--------TG-IW---KCRKCGAKFAGGAYTPVTPA 74 (89)
T ss_pred HhcCCcCCCCCCc--c---------------eeeec--------cC-eE---EcCCCCCeeccccccccchH
Confidence 4578999999986 2 34432 23 76 59999987665667776665
No 72
>cd00636 TroA-like Helical backbone metal receptor (TroA-like domain). These proteins have been shown to function in the ABC transport of ferric siderophores and metal ions such as Mn2+, Fe3+, Cu2+ and/or Zn2+. Their ligand binding site is formed in the interface between two globular domains linked by a single helix. Many of these proteins also possess a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence). The TroA-like proteins differ in their fold and ligand-binding mechanism from the PBPI and PBPII proteins, but are structurally similar, however, to the beta-subunit of the nitrogenase molybdenum-iron protein MoFe. Most TroA-like proteins are encoded by ABC-type operons and appear to function as periplasmic components of ABC transporters in metal ion uptake.
Probab=30.59 E-value=1.2e+02 Score=30.09 Aligned_cols=35 Identities=29% Similarity=0.377 Sum_probs=27.2
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEE
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVL 196 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~ 196 (1397)
++.|++++||||++..+......+.|.+.||.++.
T Consensus 54 ~E~l~~l~pDlvi~~~~~~~~~~~~l~~~~i~~~~ 88 (148)
T cd00636 54 LEKIAALKPDLIIANGSGLEAWLDKLSKIAIPVVV 88 (148)
T ss_pred HHHHhccCCCEEEEecccchhHHHHHHHhCCCEEE
Confidence 45677889999999988776677888898855544
No 73
>COG1504 Uncharacterized conserved protein [Function unknown]
Probab=30.32 E-value=1.8e+02 Score=29.34 Aligned_cols=51 Identities=16% Similarity=0.182 Sum_probs=44.3
Q ss_pred HHHhcCCcEEEecCCC------cHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeE
Q 000605 164 KIEALRPNVLLVEKSV------SSYAQDLLLAKEISLVLNVKRPLLERIARCTGALI 214 (1397)
Q Consensus 164 rI~~~~pnVVlv~k~V------s~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~I 214 (1397)
.+...+|.+|+|+-++ ++.|.++|.+.|+-|+.---+..|+|.-..-|+.=
T Consensus 56 ~~lee~~E~ivvGTG~~G~l~l~~ea~e~~r~k~~~vi~~pT~EAikr~nel~~~kr 112 (121)
T COG1504 56 ELLEEGPEVIVVGTGQSGMLELSEEAREFFRKKGCEVIELPTPEAIKRYNELRGKKR 112 (121)
T ss_pred HHHhcCCcEEEEecCceeEEEeCHHHHHHHHhcCCeEEEeCCHHHHHHHHHHhccce
Confidence 3445899999999886 78899999999999999999999999998888643
No 74
>cd01140 FatB Siderophore binding protein FatB. These proteins have been shown to function as ABC-type initial receptors in the siderophore-mediated iron uptake in some eubacterial species. They belong to the TroA superfamily of periplasmic metal binding proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=27.41 E-value=1.2e+02 Score=34.65 Aligned_cols=51 Identities=14% Similarity=0.229 Sum_probs=34.7
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC-------hHHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK-------RPLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk-------~~~LerIar~TgA 212 (1397)
+++|++++||||++...-.....+++..++|.++.--. ...++.+++++|-
T Consensus 65 ~E~i~al~PDlvi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~lg~~~g~ 122 (270)
T cd01140 65 LEAIAALKPDLIIIGGRLAEKYDELKKIAPTIDLGADLKNYLESVKQNIETLGKIFGK 122 (270)
T ss_pred HHHHhcCCCCEEEECCccHHHHHHHHHhCCeeEEecCchHHHHHHHHHHHHHHHHhCc
Confidence 56788999999998766555666666677776664211 1246777777765
No 75
>cd01147 HemV-2 Metal binding protein HemV-2. These proteins are predicted to function as initial receptors in ABC transport of metal ions. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind the metal ion in the cleft between these domains. In addition, these proteins sometimes have a low complexity region containing a metal-binding histidine-rich motif (repetitive HDH sequence).
Probab=26.70 E-value=85 Score=35.59 Aligned_cols=51 Identities=25% Similarity=0.313 Sum_probs=32.5
Q ss_pred HHHHHhcCCcEEEecCCCcH--HHHHHHHHcCcEEEEccCh-------HHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSS--YAQDLLLAKEISLVLNVKR-------PLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~--~A~~~L~~~gI~vi~~Vk~-------~~LerIar~TgA 212 (1397)
+++|++++||+||....... ...++...+||.++.--.. ..++.+++.+|-
T Consensus 67 ~E~i~~l~PDLIi~~~~~~~~~~~~~l~~~~gipvv~~~~~~~~~~~~~~i~~lg~~~g~ 126 (262)
T cd01147 67 YEKIAALKPDVVIDVGSDDPTSIADDLQKKTGIPVVVLDGGDSLEDTPEQIRLLGKVLGK 126 (262)
T ss_pred HHHHHhcCCCEEEEecCCccchhHHHHHHhhCCCEEEEecCCchHhHHHHHHHHHHHhCC
Confidence 46789999999999876654 3333334488887643321 235666666664
No 76
>cd01141 TroA_d Periplasmic binding protein TroA_d. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.64 E-value=72 Score=34.36 Aligned_cols=33 Identities=21% Similarity=0.317 Sum_probs=26.9
Q ss_pred HHHHHhcCCcEEEecCCCcHH-HHHHHHHcCcEE
Q 000605 162 ISKIEALRPNVLLVEKSVSSY-AQDLLLAKEISL 194 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~-A~~~L~~~gI~v 194 (1397)
+++|++++|||||....-... ..+.|.+.||.+
T Consensus 62 ~E~ll~l~PDlii~~~~~~~~~~~~~l~~~gIpv 95 (186)
T cd01141 62 VELIVALKPDLVILYGGFQAQTILDKLEQLGIPV 95 (186)
T ss_pred HHHHhccCCCEEEEecCCCchhHHHHHHHcCCCE
Confidence 688999999999987665553 778899999855
No 77
>cd01139 TroA_f Periplasmic binding protein TroA_f. These proteins are predicted to function as initial receptors in the ABC metal ion uptake in eubacteria and archaea. They belong to the TroA superfamily of helical backbone metal receptor proteins that share a distinct fold and ligand binding mechanism. A typical TroA protein is comprised of two globular subdomains connected by a single helix and can bind their ligands in the cleft between these domains.
Probab=26.17 E-value=1.1e+02 Score=36.32 Aligned_cols=51 Identities=18% Similarity=0.316 Sum_probs=37.1
Q ss_pred HHHHHhcCCcEEEecCCCc-----HHHHHHHHHcCcEEEEcc--------ChHHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVS-----SYAQDLLLAKEISLVLNV--------KRPLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs-----~~A~~~L~~~gI~vi~~V--------k~~~LerIar~TgA 212 (1397)
+++|++++|||||...... .-+.+.|.+.||.++.-- -...++.+++.+|.
T Consensus 84 ~E~l~~l~PDLIi~~~~~~~~~~~~~~~~~l~~~gipvv~~~~~~~~~~~~~~~i~~lg~i~g~ 147 (342)
T cd01139 84 VEKVLTLKPDLVILNIWAKTTAEESGILEKLEQAGIPVVFVDFRQKPLKNTTPSMRLLGKALGR 147 (342)
T ss_pred HHHHhhcCCCEEEEeccccccchhhHHHHHHHHcCCcEEEEeCCCchhhhHHHHHHHHHHHhCC
Confidence 6788999999999875542 346778999998876421 13457788888776
No 78
>PF06677 Auto_anti-p27: Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27); InterPro: IPR009563 The proteins in this entry are functionally uncharacterised and include several proteins that characterise Sjogren's syndrome/scleroderma autoantigen 1 (Autoantigen p27). It is thought that the potential association of anti-p27 with anti-centromere antibodies suggests that autoantigen p27 might play a role in mitosis [].
Probab=24.40 E-value=44 Score=27.73 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=21.3
Q ss_pred cHHHHHHHhhccCCCCCCCCchhhhc
Q 000605 507 PLGRYLHGDLFNQTSCCRSCNESAEA 532 (1397)
Q Consensus 507 tLGqFLe~~c~~~~~~C~sC~~pm~~ 532 (1397)
-+|++|.+=.--.+..||.|+.|++.
T Consensus 4 ~m~~~LL~G~~ML~~~Cp~C~~PL~~ 29 (41)
T PF06677_consen 4 KMGEYLLQGWTMLDEHCPDCGTPLMR 29 (41)
T ss_pred HHHHHHHHhHhHhcCccCCCCCeeEE
Confidence 36888887777778899999999875
No 79
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.17 E-value=2.2e+02 Score=33.83 Aligned_cols=57 Identities=11% Similarity=0.022 Sum_probs=44.8
Q ss_pred HHHHHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccChHHHHHHHHHhCCeEc
Q 000605 159 KMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 159 ~~~V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~TgA~Ii 215 (1397)
...++-+++.+|.+|.+..+......+.|.++|+.++-.|..-..-+.+.-.|++++
T Consensus 77 ~~~~~~~~~~~v~~v~~~~g~p~~~i~~lk~~g~~v~~~v~s~~~a~~a~~~GaD~I 133 (307)
T TIGR03151 77 DELVDLVIEEKVPVVTTGAGNPGKYIPRLKENGVKVIPVVASVALAKRMEKAGADAV 133 (307)
T ss_pred HHHHHHHHhCCCCEEEEcCCCcHHHHHHHHHcCCEEEEEcCCHHHHHHHHHcCCCEE
Confidence 346677788999999998888777888899999999988877666666666677665
No 80
>PRK11411 fecB iron-dicitrate transporter substrate-binding subunit; Provisional
Probab=21.08 E-value=2e+02 Score=33.77 Aligned_cols=51 Identities=20% Similarity=0.260 Sum_probs=35.0
Q ss_pred HHHHHhcCCcEEEecCCCcHHHHHHHHHcCcEEEEccC---h----HHHHHHHHHhCC
Q 000605 162 ISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVK---R----PLLERIARCTGA 212 (1397)
Q Consensus 162 V~rI~~~~pnVVlv~k~Vs~~A~~~L~~~gI~vi~~Vk---~----~~LerIar~TgA 212 (1397)
+++|++++||+||+...-.....+.|.+.+-+++...+ - ..++.+++.+|-
T Consensus 94 ~E~I~al~PDLIi~~~~~~~~~~~~L~~~~pv~~~~~~~~~~~~~~~~i~~lg~i~g~ 151 (303)
T PRK11411 94 LEAIAALKPDLIIADSSRHAGVYIALQKIAPTLLLKSRNETYQENLQSAAIIGEVLGK 151 (303)
T ss_pred HHHHHhCCCCEEEecccccHHHHHHHHHhCCEEEecCCCCCHHHHHHHHHHHHHHhCC
Confidence 78899999999999765556666777777533333222 1 235678888885
No 81
>COG1779 C4-type Zn-finger protein [General function prediction only]
Probab=20.79 E-value=94 Score=34.40 Aligned_cols=41 Identities=24% Similarity=0.455 Sum_probs=27.2
Q ss_pred ccCCCCCCCCchhhhcccceeeecCcEEEEEEEecCCcCCCCCCCCcEEEEeecccCCC
Q 000605 517 FNQTSCCRSCNESAEAHVLCYTHQQGNLTISVKCLSSVRLPGERDGKIWMWHRCLRCAH 575 (1397)
Q Consensus 517 ~~~~~~C~sC~~pm~~H~r~yvH~~g~i~I~ve~~~~~~lp~~~~~~I~mWs~C~~C~~ 575 (1397)
+...-.||.|+.-|..|.+.| .+|=.. ..+.|--.|..||.
T Consensus 11 ~~~~~~CPvCg~~l~~~~~~~-----------------~IPyFG-~V~i~t~~C~~CgY 51 (201)
T COG1779 11 FETRIDCPVCGGTLKAHMYLY-----------------DIPYFG-EVLISTGVCERCGY 51 (201)
T ss_pred eeeeecCCcccceeeEEEeee-----------------cCCccc-eEEEEEEEccccCC
Confidence 445567999998776665543 133222 25777789999996
Done!