Query 000605
Match_columns 1397
No_of_seqs 324 out of 1978
Neff 6.6
Searched_HMMs 29240
Date Tue Mar 26 18:28:44 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000605.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_375-379//hhsearch_pdb/000605hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2ybx_A Phosphatidylinositol-5- 1.0 1 1 564.9 21.1 250 1125-1388 75-394 (394)
2 2gk9_A Phosphatidylinositol-4- 1.0 1 1 556.6 14.1 248 1126-1389 68-392 (392)
3 3iyg_G T-complex protein 1 sub 1.0 1 1 453.2 31.4 297 3-313 84-406 (515)
4 3aq1_B Thermosome subunit; gro 1.0 1 1 436.2 25.5 297 3-313 48-369 (500)
5 3iyg_A T-complex protein 1 sub 1.0 1 1 435.3 30.7 296 3-313 85-413 (529)
6 1a6d_B Thermosome (beta subuni 1.0 1 1 433.5 27.3 296 3-313 96-416 (543)
7 1q3q_A Thermosome alpha subuni 1.0 1 1 433.2 29.1 296 3-313 98-418 (548)
8 3iyg_Z T-complex protein 1 sub 1.0 1 1 432.2 29.2 292 3-313 85-410 (517)
9 3p9d_F T-complex protein 1 sub 1.0 1 1 431.3 16.1 294 3-313 92-422 (546)
10 1a6d_A Thermosome (alpha subun 1.0 1 1 429.6 25.2 296 3-313 97-415 (545)
No 1
>2ybx_A Phosphatidylinositol-5-phosphate 4-kinase type-2; transferase, signalling; HET: PHD; 2.56A {Homo sapiens} PDB: 1bo1_A
Probab=1.00 E-value=1 Score=564.85 Aligned_cols=250 Identities=28% Similarity=0.506 Sum_probs=226.4
Q ss_pred EEEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCC-CCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHH
Q ss_conf 2399998289999999987099957899963136667-569997411488741781787304899999999999999999
Q 000605 1125 VKFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKW-SAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKY 1203 (1397)
Q Consensus 1125 ~~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~-~~sgGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y 1203 (1397)
.+|+|++|||.+|++||++||+++.+|+.||++|..| .+++|||||+||+|.|+|||||||++.|+++|+++||.||+|
T Consensus 75 ~~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~~~s~GKSGs~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~ 154 (394)
T 2ybx_A 75 SHFKFKEYCPMVFRNLRERFGIDDQDFQNSLTRSAPLPNDSQARSGARFHTSYDKRYIIKTITSEDVAEMHNILKKYHQY 154 (394)
T ss_dssp SEEEEEEESHHHHHHHHHHTTCCHHHHHHHHHSSCCEECC-----CCCEEECTTSSEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_conf 87499997889999999982979999999854787642478998668799817972899961999999999999999999
Q ss_pred HHHHCCCCCCCHHHHHHCEEEEEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEECCCCCCCCCCCCCC--CCCCCCCCH
Q ss_conf 97407999994055321167987640489815799989862146898-602677377865445557988--985322421
Q 000605 1204 LTDSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDTT--GTNKVLLDM 1280 (1397)
Q Consensus 1204 ~~~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~--~~~~vl~D~ 1280 (1397)
|.++ +++|||+||||+|+|++. |+ +.|||||+|+|+++ .++++||||||+++|.+.+.+ +...||||+
T Consensus 155 ~~~~---~~~TLL~k~~Gly~v~~~----~~--~~~fvVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~ 225 (394)
T 2ybx_A 155 IVEC---HGITLLPQFLGMYRLNVD----GV--EIYVIVTRNVFSHRLSVYRKYDLKGSTVAREASDKEKAKELPTLKDN 225 (394)
T ss_dssp HHHT---TTCCSSCCEEEEEEEEET----TE--EEEEEEEECSSCSSSCCSEEEEECCSSSCCCCCHHHHTSSSCEECHH
T ss_pred HHHC---CCCCCHHHHCEEEEEEEC----CE--EEEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCC
T ss_conf 9840---898676653178999989----90--79999993677887642010020564457766753445676541111
Q ss_pred HHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECC-------------------------------
Q ss_conf 1210003985102968899999999840842114985333003665335-------------------------------
Q 000605 1281 NLLENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEE------------------------------- 1329 (1397)
Q Consensus 1281 n~~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nimDYSLLvgi~~~------------------------------- 1329 (1397)
||++.. .+|+|+++.|+.|.+||++||.||+++||||||||||||..
T Consensus 226 df~~~~--~~i~l~~~~k~~l~~qL~~D~~FL~~~~iMDYSLLvGIh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~ 303 (394)
T 2ybx_A 226 DFINEG--QKIYIDDNNKKVFLEKLKKDVEFLAQLKLMDYSLLVGIHDVERAEQEEVECEENDGEEEGESDGTHPVGTPP 303 (394)
T ss_dssp HHHHTT--CCCCCCHHHHHHHHHHHHHHHHHHHHTTEESCEEEEEEEEHHHHHHHHHCC---------------------
T ss_pred CHHHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCHHHCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 367469--819978999999999999999999877876640487773155432000024455554334456554457875
Q ss_pred -----------------------------------CCEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCHH
Q ss_conf -----------------------------------440667655100134113467777653022489999997413936
Q 000605 1330 -----------------------------------RKELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASPTIISPK 1374 (1397)
Q Consensus 1330 -----------------------------------~~~~~~GIID~l~~yt~~KklE~~~K~~~~lgg~~~~~~T~v~P~ 1374 (1397)
+..||+|||||||+|||+||+|||+|++ ++|+ +..||||+|+
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyyiGIIDiLq~Y~~~KklE~~~Ks~--~~~~-~~~iS~V~P~ 380 (394)
T 2ybx_A 304 DSPGNTLNSSPPLAPGEFDPNIDVYGIKCHENSPRKEVYFMAIIXILTHYDAKKKAAHAAKTV--KHGA-GAEISTVNPE 380 (394)
T ss_dssp -----------CCCTTCCCTTTSTTEEECCTTCSSCEEEEEEEECCCEESCC----------------------CCCCHH
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEECCCHHHHHHHHHHHH--CCCC-CCCCCEECHH
T ss_conf 553444432222365545644432343455577774379999998631078408999999986--1589-9998569989
Q ss_pred HHHHHHHHHHHHCC
Q ss_conf 79999999997204
Q 000605 1375 QYKKRFRKAMTSYF 1388 (1397)
Q Consensus 1375 ~Y~~RF~~~m~~~f 1388 (1397)
+|++||++||.++|
T Consensus 381 ~Y~~RF~~fm~~if 394 (394)
T 2ybx_A 381 QYSKRFLDFIGHIL 394 (394)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHC
T ss_conf 99999999999869
No 2
>2gk9_A Phosphatidylinositol-4-phosphate 5-kinase, type II, gamma; phosphoinositide, structural genomics, structural genomics consortium, SGC, transferase; 2.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=556.63 Aligned_cols=248 Identities=30% Similarity=0.524 Sum_probs=224.4
Q ss_pred EEEEEECCHHHHHHHHHHCCCCHHHHHHHHCCCCCCCCCCCCCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHH
Q ss_conf 39999828999999998709995789996313666756999741148874178178730489999999999999999997
Q 000605 1126 KFSVTSYFAKQFDSLRKKCCPSGVDFVRSLSRSRKWSAQGGKSNVFFAKSLDERFIIKQVKKTELESFEEFAPEYFKYLT 1205 (1397)
Q Consensus 1126 ~~~~~~y~p~~F~~LR~~~~~~~~~~~~Sl~~~~~~~~sgGKSgs~F~~T~D~rfiiK~is~~E~~~f~~~lp~Yf~y~~ 1205 (1397)
+|+|++|||.+|++||++||+++.+|+.||++|..|. ++|||| +||+|.|+|||||||++.|+++|+++||.||+||.
T Consensus 68 ~f~~k~Y~P~~F~~LR~~~~i~~~dy~~Sl~~~~~~~-s~GKSG-~F~~T~D~rfiIKti~~~E~~~l~~~lp~Y~~~~~ 145 (392)
T 2gk9_A 68 HFKFKEYCPQVFRNLRDRFGIDDQDYLVSLTRNPPSE-SEGSDG-RFLISYDRTLVIKEVSSEDIADMHSNLSNYHQYIV 145 (392)
T ss_dssp SBEEEEESHHHHHHHHHTTTCCHHHHHHHHHSSCCCC-CC------CCCCTTSSEEEEECCHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEECHHHHHHHHHHHCCCHHHHHHHHCCCCCCC-CCCCCC-EEEECCCCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_conf 6499997979999999980989899998743787455-798762-37986998689996099999999999999999998
Q ss_pred HHCCCCCCCHHHHHHCEEEEEEEECCCCEEEEEEEEEEECCCCCC-CCEEEEECCCCCCCCCCCCCCC--CCCCCCCHHH
Q ss_conf 407999994055321167987640489815799989862146898-6026773778654455579889--8532242112
Q 000605 1206 DSLNSRSPTCLAKILGIYQVSVKHLKGGKETKIDLMVMENLFFRR-SISRVYDLKGSARSRYNTDTTG--TNKVLLDMNL 1282 (1397)
Q Consensus 1206 ~~~~~~~~tlL~ki~G~y~i~~~~~~~g~~~~~~~iVMeNlf~~~-~i~~~yDLKGS~~~R~~~~~~~--~~~vl~D~n~ 1282 (1397)
++ +++|||+||||+|+|++. |++ .|||||+|+|+++ .|+++||||||+++|++.+.+. ...||||+||
T Consensus 146 ~~---~~~TLL~k~~Gly~v~~~----~~~--~~~vVM~Nlf~~~~~i~~~yDLKGS~~~R~~~~~~~~~~~~~LkD~df 216 (392)
T 2gk9_A 146 KC---HGNTLLPQFLGMYRVSVD----NED--SYMLVMRNMFSHRLPVHRKYDLKGSLVSREASDKEKVKELPTLRDMDF 216 (392)
T ss_dssp HT---TSCSSSCCEEEEEECCBS----SCC--CEEEEEECSSCSSSCCSCCCEECC-----------------CCBTTC-
T ss_pred HH---CCCCCHHHHCEEEEEEEC----CEE--EEEEEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCEECCCCH
T ss_conf 40---798655653068999989----907--999999367788764103445056545776675223566661113115
Q ss_pred HHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEEEECCC--------------------------------
Q ss_conf 100039851029688999999998408421149853330036653354--------------------------------
Q 000605 1283 LENLRTEPLFLGSKAKRSLERAIWNDTSFLASVDVMDYSLLVGVDEER-------------------------------- 1330 (1397)
Q Consensus 1283 ~~~~~~~~i~l~~~~k~~l~~~l~~Dt~FL~~~nimDYSLLvgi~~~~-------------------------------- 1330 (1397)
++.. .+|+|+++.|+.|..||++||.||+++||||||||||||...
T Consensus 217 ~~~~--~~i~l~~~~k~~l~~~l~~D~~FL~~~~iMDYSLLvGi~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 294 (392)
T 2gk9_A 217 LNKN--QKVYIGEEEKKIFLEKLKRDVEFLVQLKIMDYSLLLGIHDIIRGSEPEEEAPVREDESEVDGDCSLTGPPALVG 294 (392)
T ss_dssp -CCC--CCCCC----CHHHHHHHHHHHHHHHHTTCCCCCEECCCBCC---------------------------------
T ss_pred HHCC--CEEEECHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 6259--86987899999999999999999987687663058766315543211222234455554555332345643224
Q ss_pred ------------------------------------------CEEEEEEEECCCCCCHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf ------------------------------------------40667655100134113467777653022489999997
Q 000605 1331 ------------------------------------------KELVLGIIDFMRQYTWDKHLETWVKASGILGGPKNASP 1368 (1397)
Q Consensus 1331 ------------------------------------------~~~~~GIID~l~~yt~~KklE~~~K~~~~lgg~~~~~~ 1368 (1397)
..||+|||||||+|||+||+|||+|++ ++|+ +..|
T Consensus 295 ~~~t~~~~~~~~~~~~~~~~~~~~~~~~d~~~i~~~~~~~~~~iyylGIIDiLq~Y~~~KklE~~~Ks~--~~~~-~~~i 371 (392)
T 2gk9_A 295 SYGTSPEGIGGYIHSHRPLGPGEFESFIDVYAIRSAEGAPQKEVYFMGLIDILTQYDAKKKAAHAAKTV--KHGA-GAEI 371 (392)
T ss_dssp ------------------------------------------CBCCCEECCCC---------------------------
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEEEEEECCHHHHHHHHHHHH--CCCC-CCCC
T ss_conf 567885453333432222366656544432343455567775279999977400087008999999986--1578-9997
Q ss_pred CCCCHHHHHHHHHHHHHHCCC
Q ss_conf 413936799999999972045
Q 000605 1369 TIISPKQYKKRFRKAMTSYFL 1389 (1397)
Q Consensus 1369 T~v~P~~Y~~RF~~~m~~~f~ 1389 (1397)
|+|+|++|++||++||.++|.
T Consensus 372 S~v~P~~Y~~RF~~fm~~~~~ 392 (392)
T 2gk9_A 372 STVHPEQYAKRFLDFITNIFA 392 (392)
T ss_dssp ---CHHHHHHHHHHHTC----
T ss_pred CEECHHHHHHHHHHHHHHHHC
T ss_conf 468989999999999999609
No 3
>3iyg_G T-complex protein 1 subunit gamma; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=453.18 Aligned_cols=297 Identities=23% Similarity=0.397 Sum_probs=274.0
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH------------------CCCCCCCCCHHHHHHHHHH
Q ss_conf 7421442403688876320999959999999999999999983------------------8877666892258999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE------------------GIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~------------------~i~~~~k~~~~~w~~~l~~ 64 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+. .+++++|. ...|.+.+++
T Consensus 84 TtvvvLAgeLL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~~l~~va~tsl~sK~-i~~~~~~~~~ 162 (515)
T 3iyg_G 84 TSVIILAGEMLSVAEHFLEQQMHPTVVISAYRKALDDMISTLKKISIPVDTSNRDTMLNIINSSITTKV-ISRWSSLACN 162 (515)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCC-HHHHHHHHHH
T ss_conf 249999999999999999879988999999999999999999985045688889999999998714875-2557999999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC---
Q ss_conf 99998200276788999789678538997138998863479767993125778984100496099982101334576---
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~--- 141 (1397)
++++|+.+|.++......+|+.+||+|+|++||++.||++|+|++|+|++.|++||++++||||++++|||||++.+
T Consensus 163 i~vdav~~V~~~~~~~~~~dl~~~I~I~ki~Ggs~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 242 (515)
T 3iyg_G 163 IALDAVKTVQFEENGRKEIDIKKYARVEKIPGGIIEDSCVLRGVMINKDVTHPRMRRYIKNPRIVLLDSSLEYKKGESQT 242 (515)
T ss_pred HHHHHHHHCCCCCCCCCCCCHHHEEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCC
T ss_conf 99999984233568885456423058998369980101688417982787898886144410799981555444234674
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCC
Q ss_conf ----8978899999999999999999999249968985479769999999976957997069578999999969947145
Q 000605 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii~s 217 (1397)
+...++++++++|++|++++|++|++.||+||+++++|+++|++||.++||++++++++.+|+|||++|||+|+++
T Consensus 243 ~v~is~~~~l~~~l~~E~~~l~~~v~kI~~~g~~vIi~~~~I~~~al~~L~~~~I~av~~~~k~~leria~~tGa~ii~~ 322 (515)
T 3iyg_G 243 DIEITREEDFTRILQMEEEYIQQLCEDIIQLKPDVVITEKGISDLAQHYLMRANITAIRRVRKTDNNRIARACGARIVSR 322 (515)
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCEEECC
T ss_conf 28967899999999999999999999999479989997886678999999878956666678899999999959926421
Q ss_pred CCCCCCCCCCE-EEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55689897410-00399999316322232357899725999984899863699952699989999999999999999982
Q 000605 218 IDNISTTRLGH-CELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHL 296 (1397)
Q Consensus 218 id~L~~~~LG~-c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~dal~v~~~~ 296 (1397)
++++.+..||+ |+.|++.++++ ++|+||+||+++.+|||+|||+++.+|+|+||+++||+++++++
T Consensus 323 l~~l~~~~LG~~a~~v~~~~~g~-------------~~~~~i~g~~~~~~~TIllrG~t~~~l~E~er~i~Dal~~~r~~ 389 (515)
T 3iyg_G 323 PEELREEDVGTGAGLLEIKKIGD-------------EYFTFITECKDPKACTILLRGASKEILSEVERNLQDAMQVCRNV 389 (515)
T ss_pred CCCCCHHHCCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHH
T ss_conf 02367666287562899999878-------------16999957888876899984898899999999999999999999
Q ss_pred HCCCEEECCCCCCCCCC
Q ss_conf 30592660798445444
Q 000605 297 SLETSFLADEGATLPKM 313 (1397)
Q Consensus 297 ~le~~~l~ggGa~e~~~ 313 (1397)
++++.+|+||||+|.+.
T Consensus 390 ~~~~~ivpGGGa~e~~~ 406 (515)
T 3iyg_G 390 LLDPQLVPGGGASEMAV 406 (515)
T ss_pred HHCCCEEECCCHHHHHH
T ss_conf 62896893788999999
No 4
>3aq1_B Thermosome subunit; group II chaperonin, protein folding, chaperone; 2.75A {Methanococcoides burtonii}
Probab=1.00 E-value=1 Score=436.19 Aligned_cols=297 Identities=20% Similarity=0.316 Sum_probs=273.1
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH------------------HHHHCCCCCCCCCHHHHHHHHHH
Q ss_conf 742144240368887632099995999999999999999------------------99838877666892258999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSEL------------------LRAEGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qL------------------l~~~~i~~~~k~~~~~w~~~l~~ 64 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+ ...+.+++++|+. ..|.+.|++
T Consensus 48 TtvvvLa~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~-~~~~~~i~~ 126 (500)
T 3aq1_B 48 TTAAVLSGELLSKAEELIMKGVHSTIISEGYRHAAEKCREILETITIAISPDDEAALIKIAGTAITGKGA-EAYKEKLSA 126 (500)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHTTCCSSST-TSSHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHH
T ss_conf 7899999999999999998799989999999999999999999826888887678999999998623113-555789999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC---
Q ss_conf 99998200276788999789678538997138998863479767993125778984100496099982101334576---
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~--- 141 (1397)
|+++|+..|.++......+|+.++|+|+|++||+..||++++|++|+|++.|+.||++++||||++++|+|||++.+
T Consensus 127 li~dAv~~v~~~~~g~~~~di~~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~i~n~kIll~~~~Le~~k~e~~~ 206 (500)
T 3aq1_B 127 LTVKAVRSIVEEEEDGLKVNVLENIKIEKRAGGSIDDSELIDGLVIDKERSHPNMPEKVENAKILLLSCPVEFRKTEVDS 206 (500)
T ss_dssp HHHHHHTTSEECCSSSCEECHHHHEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBCC-------
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCEEEEEECCCCCCCEEEEEEEEEEECCCCCCCCCCCCCCEEEEEECCCCCCCCCCCE
T ss_conf 99999999613346874445112279998358980011788226994057889985443598799993776666544632
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCC
Q ss_conf ----8978899999999999999999999249968985479769999999976957997069578999999969947145
Q 000605 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii~s 217 (1397)
++..+++.++++|++|++.++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.++++
T Consensus 207 ~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~ 286 (500)
T 3aq1_B 207 EIKITSPGQMQLFLDQEEKMMREMAEKVIASGANVVFCQKGIDDMAQYYIEKAGIYAVRRVKKSDLKRLSKVTGATIIQD 286 (500)
T ss_dssp ------------------CHHHHHHHHHHTTCCSEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEEEECCHHHHHHHHHHHCCEEECC
T ss_conf 47648999999999999999999999999749399998777677999999878989997279999999999849957456
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55689897410003999993163222323578997259999848998636999526999899999999999999999823
Q 000605 218 IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1397)
Q Consensus 218 id~L~~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~dal~v~~~~~ 297 (1397)
++++.+..||+|+.|++.++++ +++++|+||+++.+|||+|||+++.+|+|+||+++||++++++++
T Consensus 287 l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Dal~~~r~~~ 353 (500)
T 3aq1_B 287 LDQITTEDVGTAGLVEEKEVRG-------------GKMTYVTGCQNSKAVTVLLHGGTEHVVDSLDHALNDALHVVGVVI 353 (500)
T ss_dssp TTCCCSTTCEEEEEEEEEECSS-------------SEEEEEEEETTCCCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCEEEEEEEECC-------------EEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 0118986788760899998457-------------689999778887569999358967799999999998999999999
Q ss_pred CCCEEECCCCCCCCCC
Q ss_conf 0592660798445444
Q 000605 298 LETSFLADEGATLPKM 313 (1397)
Q Consensus 298 le~~~l~ggGa~e~~~ 313 (1397)
+|+++||||||+|...
T Consensus 354 ~~~~iVpGGGa~e~~~ 369 (500)
T 3aq1_B 354 EDGKVVVGGGSSEVEL 369 (500)
T ss_dssp HHSEEEETTTHHHHHH
T ss_pred HCCCCCCCCCHHHHHH
T ss_conf 7888788872999999
No 5
>3iyg_A T-complex protein 1 subunit alpha; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=435.32 Aligned_cols=296 Identities=18% Similarity=0.182 Sum_probs=269.4
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC-CCC------------------CCCCCHHHHHHHHH
Q ss_conf 74214424036888763209999599999999999999999838-877------------------66689225899999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG-IKL------------------GKEDSEEDWLGIIT 63 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~-i~~------------------~~k~~~~~w~~~l~ 63 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+.+ ++. ++|. ...|.+.|+
T Consensus 85 TtvvvLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~~s~~v~~~~~e~l~~va~tsl~sK~-~~~~~~~i~ 163 (529)
T 3iyg_A 85 TSVVIIAAELLKNADELVKQKIHPTSVISGYRLACKEAVRYISENLIINTDELGRDCLINAAKTSMSSKV-IGINGDFFA 163 (529)
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHH
T ss_conf 0299999999999999998799999999999999999999998742607888998999999999856675-532078999
Q ss_pred HHHHHHHHCCCCCCCC-CCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC-
Q ss_conf 9999982002767889-99789678538997138998863479767993125778984100496099982101334576-
Q 000605 64 TIAWQAANFVKPDTSR-GGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 64 ~l~~~Av~~v~~~~~~-~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~- 141 (1397)
+|+++|+..|.+...+ ...+|+ ++|+|+|++||++.||++++|++|+|.+.|+.||++++||||++++|||||++.+
T Consensus 164 ~livdAv~~V~~~~~~g~~~~dv-~~I~I~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIlll~~~le~~k~e~ 242 (529)
T 3iyg_A 164 NLVVDAVLAIKYTDIRGQPRYPV-NSINVLKAHGRSQMESMLINGYALNCVVGSQGMPKRIVNAKIACLDFSLQKTKMKL 242 (529)
T ss_pred HHHHHHHHHHHHHCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCC
T ss_conf 99999999975124478766654-41799995598855438996168745864356875168866999627765453567
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEEC
Q ss_conf ------89788999999999999999999992499689854797699999999769579970695789999999699471
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALIT 215 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii 215 (1397)
+...+++.+.++|+++++.++++|++.|++||+++++|++.|++||.++||++++++++.+|+|||++|||.++
T Consensus 243 ~~~v~i~~~~~~~~i~~~E~~~l~~~v~kI~~~g~nvvi~~~~I~d~al~~L~~~gI~av~~v~k~~leria~~tGa~iv 322 (529)
T 3iyg_A 243 GVQVVITDPEKLDQIRQRESDITKERIQKILATGANVILTTGGIDDMCLKYFVEAGAMAVRRVLKRDLKRIAKASGATVL 322 (529)
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCCEECCCCHHHHHHHHHHHCCEEE
T ss_conf 85499689999999999999999999999995499899987887789999999869803634798889999998599566
Q ss_pred CCCCCCC------CCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHH
Q ss_conf 4555689------8974100039999931632223235789972599998489986369995269998999999999999
Q 000605 216 PSIDNIS------TTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYA 289 (1397)
Q Consensus 216 ~sid~L~------~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~da 289 (1397)
++++.+. +.+||+|+.|+++++++ ++|++|+||+.+.+|||+|||+++.+|+|+||+++||
T Consensus 323 ~~~~~l~~~e~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~Da 389 (529)
T 3iyg_A 323 STLANLEGEETFEASMLGQAEEVVQERICD-------------DELILIKNTKARTSASVILRGANDFMCDEMERSLHDA 389 (529)
T ss_pred CCHHCCCCHHCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCHHHHHHHHHHHHHHH
T ss_conf 140104531005763376543899998679-------------5399997579986589997786277999999999999
Q ss_pred HHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf 999998230592660798445444
Q 000605 290 VFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 290 l~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
+++++++++++++|+||||+|.+.
T Consensus 390 l~v~r~~v~~~~iVpGGGa~E~~l 413 (529)
T 3iyg_A 390 LCVVKRVLESKSVVPGGGAVEAAL 413 (529)
T ss_pred HHHHHHHHHCCEEEECCCHHHHHH
T ss_conf 999999963890884786799999
No 6
>1a6d_B Thermosome (beta subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_B* 1e0r_B
Probab=1.00 E-value=1 Score=433.50 Aligned_cols=296 Identities=20% Similarity=0.301 Sum_probs=272.7
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHC------------------CCCCCCCCHHHHHHHHHH
Q ss_conf 74214424036888763209999599999999999999999838------------------877666892258999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEG------------------IKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~------------------i~~~~k~~~~~w~~~l~~ 64 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+.. +++++|+ ...|.+.|++
T Consensus 96 TtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~l~~va~tsl~sKi-~~~~~~~i~~ 174 (543)
T 1a6d_B 96 TTAVIIAGGLLQQAQGLINQNVHPTVISEGYRMASEEAKRVIDEISTKIGADEKALLLKMAQTSLNSKS-ASVAKDKLAE 174 (543)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTHHHHHHHHHHHHHTTSG-GGGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHCCCC-CCCCHHHHHH
T ss_conf 589999999999999999779998999999999999999999982688899877999999999852542-4454779999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC---
Q ss_conf 99998200276788999789678538997138998863479767993125778984100496099982101334576---
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~--- 141 (1397)
|+++|+..|.++....+.+|+ ++|+|+|++||+..||++++|++|+|++.|+.||++++||||++++|+|||++.+
T Consensus 175 livdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 253 (543)
T 1a6d_B 175 ISYEAVKSVAELRDGKYYVDF-DNIQVVKKQGGAIDDTQLINGIIVDKEKVHPGMPDVVKDAKIALLDAPLEIKKPEFDT 253 (543)
T ss_dssp HHHHHHHHHEEECSSSEEECG-GGEEEEEEESSCGGGCEEESEEEESCCCSSTTSCSEEEEEEEEEESSCBSCCCCSSEE
T ss_pred HHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEECCEEEECCCCCCCCCCEECCCEEEEEECCCCCCCCCCCC
T ss_conf 999999984533368744334-4489998368981222687348983177888875331387699992455644345774
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCC
Q ss_conf ----8978899999999999999999999249968985479769999999976957997069578999999969947145
Q 000605 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii~s 217 (1397)
+...+++.++++|++|+..++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.++++
T Consensus 254 ~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~v~k~~le~ia~~tGa~iis~ 333 (543)
T 1a6d_B 254 NLRIEDPSMIQKFLAQEENMLREMVDKIKSVGANVVITQKGIDDMAQHYLSRAGIYAVRRVKKSDMDKLAKATGASIVST 333 (543)
T ss_dssp EECCCSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHTCCEESC
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCCEECC
T ss_conf 38968899999999999999999999999729989998888688999999878966864689999999999829926555
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55689897410003999993163222323578997259999848998636999526999899999999999999999823
Q 000605 218 IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1397)
Q Consensus 218 id~L~~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~dal~v~~~~~ 297 (1397)
++++.+..||+|+.|++.++++ ++|++|+||+.+.+|||+|||+++.+|+|+||+++||++++++++
T Consensus 334 l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~er~l~DAl~~~r~a~ 400 (543)
T 1a6d_B 334 IDEISSSDLGTAERVEQVKVGE-------------DYMTFVTGCKNPKAVSILVRGETEHVVDEMERSITDSLHVVASAL 400 (543)
T ss_dssp GGGCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESSSSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 1449987788763899999668-------------149999668887559999657977799999999999999999999
Q ss_pred CCCEEECCCCCCCCCC
Q ss_conf 0592660798445444
Q 000605 298 LETSFLADEGATLPKM 313 (1397)
Q Consensus 298 le~~~l~ggGa~e~~~ 313 (1397)
.++++|+||||+|...
T Consensus 401 ~~~~ivpGGGa~e~~~ 416 (543)
T 1a6d_B 401 EDGAYAAGGGATAAEI 416 (543)
T ss_dssp HHCEEEETTTHHHHHH
T ss_pred HCCCCCCCCCHHHHHH
T ss_conf 7888167864999999
No 7
>1q3q_A Thermosome alpha subunit; chaperone, chaperonin; HET: ANP; 2.30A {Thermococcus SP} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1q2v_A* 1q3s_A* 1q3r_A
Probab=1.00 E-value=1 Score=433.22 Aligned_cols=296 Identities=21% Similarity=0.322 Sum_probs=273.3
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH------------------HCCCCCCCCCHHHHHHHHHH
Q ss_conf 742144240368887632099995999999999999999998------------------38877666892258999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRA------------------EGIKLGKEDSEEDWLGIITT 64 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~------------------~~i~~~~k~~~~~w~~~l~~ 64 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+ +.+++++|+. ..|.+.|++
T Consensus 98 TtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~d~~~l~~va~tsl~sKi~-~~~~~~i~~ 176 (548)
T 1q3q_A 98 TTAVVIAGELLRKAEELLDQNIHPSIITKGYALAAEKAQEILDEIAIRVDPDDEETLLKIAATSITGKNA-ESHKELLAK 176 (548)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHHCEECCTTCHHHHHHHHHHHSCSSTT-GGGHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHH
T ss_conf 3899999999999999998799889999999999999999999845888887789999999987503002-455579999
Q ss_pred HHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC---
Q ss_conf 99998200276788999789678538997138998863479767993125778984100496099982101334576---
Q 000605 65 IAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP--- 141 (1397)
Q Consensus 65 l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~--- 141 (1397)
|+++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|++.|+.||++++||||++++|+|||++.+
T Consensus 177 livdAv~~V~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~ 255 (548)
T 1q3q_A 177 LAVEAVKQVAEKKDGKYVVDL-DNIKFEKKAGEGVEESELVRGVVIDKEVVHPRMPKRVENAKIALINEALEVKKTETDA 255 (548)
T ss_dssp HHHHHHHHHCEESSSSEECCG-GGEEEEEEEBSCGGGCEEESSEEESCCCSSTTSCSEESSEEEEEECSCBSCCCCSSCC
T ss_pred HHHHHHHHHCCCCCCCCCCCC-CEEEEEEECCCCCCCEEEEEEEEEECCCCCCCCCCEECCCEEEEEECCCCCCCCCCCC
T ss_conf 999999984434578754557-7389999448983023897108984157789985651488799992676754346784
Q ss_pred ----CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCC
Q ss_conf ----8978899999999999999999999249968985479769999999976957997069578999999969947145
Q 000605 142 ----NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPS 217 (1397)
Q Consensus 142 ----~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii~s 217 (1397)
++..+++.++++|++|++.++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.++++
T Consensus 256 ~v~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~ii~~ 335 (548)
T 1q3q_A 256 KINITSPDQLMSFLEQEEKMLKDMVDHIAQTGANVVFVQKGIDDLAQHYLAKYGIMAVRRVKKSDMEKLAKATGAKIVTN 335 (548)
T ss_dssp CEEECSHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEESSCBCHHHHHHHHHTTCEEECSCCHHHHHHHHHHHCCCCBSS
T ss_pred EEEECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCCEEECCCCHHHHHHHHHHHCCEEECC
T ss_conf 39968899999999999999999999999859699998678588999999987957873379999999999859947555
Q ss_pred CCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 55689897410003999993163222323578997259999848998636999526999899999999999999999823
Q 000605 218 IDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLS 297 (1397)
Q Consensus 218 id~L~~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~dal~v~~~~~ 297 (1397)
++++.+..||+|+.|++.++++ ++|++|+||+.+..|||+|||+++.+|+|+||+++||++++++++
T Consensus 336 l~~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~er~l~DAl~~~r~a~ 402 (548)
T 1q3q_A 336 VKDLTPEDLGYAEVVEERKLAG-------------ENMIFVEGCKNPKAVTILIRGGTEHVIDEVERALEDAVKVVKDVM 402 (548)
T ss_dssp GGGCCGGGCEEESEEEEEEETT-------------EEEEEEECCSSCSSEEEEEEESSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 2549987788763899999668-------------339999658999769999778976789999999997999999999
Q ss_pred CCCEEECCCCCCCCCC
Q ss_conf 0592660798445444
Q 000605 298 LETSFLADEGATLPKM 313 (1397)
Q Consensus 298 le~~~l~ggGa~e~~~ 313 (1397)
.|+++|+||||+|...
T Consensus 403 ~~~~ivpGGGa~e~~~ 418 (548)
T 1q3q_A 403 EDGAVLPAGGAPEIEL 418 (548)
T ss_dssp HSCEEEECTTHHHHHH
T ss_pred HCCCCCCCCCHHHHHH
T ss_conf 7788056875999999
No 8
>3iyg_Z T-complex protein 1 subunit zeta; TRIC/CCT, asymmetric, cryo-EM, subunit arrangement, acetylation, ATP-binding, chaperone, cytoplasm, isopeptide bond; 4.00A {Bos taurus}
Probab=1.00 E-value=1 Score=432.23 Aligned_cols=292 Identities=18% Similarity=0.271 Sum_probs=269.6
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHH-----------------CCCCCCCCCHHHHHHHHHHH
Q ss_conf 7421442403688876320999959999999999999999983-----------------88776668922589999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAE-----------------GIKLGKEDSEEDWLGIITTI 65 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~-----------------~i~~~~k~~~~~w~~~l~~l 65 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+. .+++++|+. ..|.+.|+++
T Consensus 85 TtvvvLa~~Ll~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~s~~v~~~~~~L~~va~tsl~sKi~-~~~~d~la~l 163 (517)
T 3iyg_Z 85 TSNVLIIGELLKQADLYISEGLHPRIITEGFEAAKEKALQFLEQVKVSKEMDRETLIDVARTSLRTKVH-AELADVLTEA 163 (517)
T ss_pred EEHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCC-HHHHHHHHHH
T ss_conf 248999999999999998657799999999999999999999851767789889999999987045542-0478899999
Q ss_pred HHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC----
Q ss_conf 9998200276788999789678538997138998863479767993125778984100496099982101334576----
Q 000605 66 AWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP---- 141 (1397)
Q Consensus 66 ~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~---- 141 (1397)
+++|+..|.+. +..+|+ ++|+|+|++||+..||++++|++|+|+..|+.||++++||+|++++++|||+|.+
T Consensus 164 ~vdaV~~V~~~---~~~~dl-~~I~I~k~~Gg~~~ds~lv~G~v~dk~~~~p~m~~~ien~kIll~~~~le~~k~e~~~~ 239 (517)
T 3iyg_Z 164 VVDSILAIKKQ---DEPIDL-FMVEIMEMKHKSETDTSLIRGLVLDHGARHPDMKKRVEDAYILTCNVSLEYEKTEVNSG 239 (517)
T ss_pred HHHHHHEECCC---CCCCCH-HHHEEEEECCCCCCCCCEEEEEEEECCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEE
T ss_conf 99886033147---876773-57136651488732000575479832577877643223874999536655554445416
Q ss_pred ---CCHHHHHHHHHHHHHHHHHHHHHHHHCCCC---------EEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHH
Q ss_conf ---897889999999999999999999924996---------89854797699999999769579970695789999999
Q 000605 142 ---NQLASFNTLLQQENDHLKMVISKIEALRPN---------VLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARC 209 (1397)
Q Consensus 142 ---~~~~sle~ii~qE~e~l~~~v~rI~~~~p~---------VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~ 209 (1397)
+...+++.++++|++|++..+++|+.++++ ||+++++|++.|++||.++||++++++++.+|+|||++
T Consensus 240 ~~i~~~~~l~~~~~~E~~~i~~~v~~I~~~~~~v~~~~~~~lvIi~~~~I~d~al~~L~~~gI~~v~~v~~~~leria~~ 319 (517)
T 3iyg_Z 240 FFYKSAEEREKLVKAERKFIEDRVKKIIELKKKVCGDSDKGFVVINQKGIDPFSLDALAKEGIIALRRAKRRNMERLTLA 319 (517)
T ss_pred EEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEEECCHHHHHHHHHH
T ss_conf 99689999999999999999999999998505554125786389735667879999999879879982579999999998
Q ss_pred HCCEECCCCCCCCCCC-CCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHH
Q ss_conf 6994714555689897-410003999993163222323578997259999848998636999526999899999999999
Q 000605 210 TGALITPSIDNISTTR-LGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQY 288 (1397)
Q Consensus 210 Tga~Ii~sid~L~~~~-LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~d 288 (1397)
|||.++++++++.+.. ||+|+ |+++++++ ++++||+||+.+.+|||+|||+++.+|+|+||+++|
T Consensus 320 tGa~iv~~l~~l~~~~~LG~a~-v~e~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~t~~~l~E~kr~l~D 385 (517)
T 3iyg_Z 320 CGGIALNSLDDLNPDCLLGHAG-VYEYTLGE-------------EKFTFIEKCNNPRSVTLLIKGPNKHTLTQIKDAIRD 385 (517)
T ss_pred HCCEEECCHHHCCCCCCCCCCE-EEEEEECC-------------CEEEEEECCCCCHHHEEEECCCCHHHHHHHHHHHHH
T ss_conf 6997854534275000477514-99999768-------------258999478983344343148867899999999998
Q ss_pred HHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf 9999998230592660798445444
Q 000605 289 AVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 289 al~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
|+++++++++|+++|+||||+|.+.
T Consensus 386 Al~~~r~av~~~~iVpGGGa~e~~~ 410 (517)
T 3iyg_Z 386 GLRAVKNAIDDGCVVPGAGAVEVAM 410 (517)
T ss_pred HHHHHHHHHHCCEEECCCCHHHHHH
T ss_conf 8999999973661854862899999
No 9
>3p9d_F T-complex protein 1 subunit zeta; HSP60, eukaryotic chaperonin, actin/tubulin binding, hexadec chaperone; HET: ADP; 3.80A {Saccharomyces cerevisiae} PDB: 3p9e_f* 4d8q_F* 4d8r_f*
Probab=1.00 E-value=1 Score=431.33 Aligned_cols=294 Identities=21% Similarity=0.298 Sum_probs=268.8
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC--------------------CCCCCCHHHHHHHH
Q ss_conf 7421442403688876320999959999999999999999983887--------------------76668922589999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK--------------------LGKEDSEEDWLGII 62 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~--------------------~~~k~~~~~w~~~l 62 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+.+++ +++|+ ...|.+.|
T Consensus 92 TtvvVLA~eLL~~a~~li~~GihP~~I~~G~~~A~~~a~~~L~~~a~~v~~~~~~~~~L~~vA~tsl~sKi-~~~~~d~l 170 (546)
T 3p9d_F 92 TTVVCLVGELLRQAHRFIQEGVHPRIITDGFEIARKESMKFLDEFKISKTNLSNDREFLLQVARSSLLTKV-DADLTEVL 170 (546)
T ss_dssp HHHHHHHHHHHHHHHHHTTTTBCHHHHHHHHHHHHHHHHHHHHHHCCCCSSSSTTCHHHHHHHHHHTCSTT-HHHHCSSH
T ss_pred CCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHCCCC-CHHHHHHH
T ss_conf 10999999999999999867998689999999999999999997005555665688999999999817876-44599999
Q ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC-
Q ss_conf 9999998200276788999789678538997138998863479767993125778984100496099982101334576-
Q 000605 63 TTIAWQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP- 141 (1397)
Q Consensus 63 ~~l~~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~- 141 (1397)
++++++|+..|.+. .+..+|+ ++|+|+|++||...||++++|++|+|.+.|+.||++++||||++++|||||+|.+
T Consensus 171 a~l~vdaV~~V~~~--~~~~~dl-~~I~i~ki~Gg~~~ds~lv~G~v~dk~~~~~~m~~~~en~kIll~~~~Le~~k~e~ 247 (546)
T 3p9d_F 171 TPIVTDAVLSVYDA--QADNLDL-HMVEIMQMQHLSPKDTTFIKGLVLDHGGRHPDMPTRVKNAYVLILNVSLEYEKTEV 247 (546)
T ss_dssp HHHHHHHHHHTHHH--HHTTCCG-GGEEEECCCCSCTTTCCCCSSCEESCCCCSSSSCSSBCSCCCCEECCCSSSCCCSS
T ss_pred HHHHHHHHEEEECC--CCCCCCC-HHEEEEEECCCCCCCCEEEEEEEEECCCCCCCCCCEECCCEEEEECCCCCCCCCCC
T ss_conf 99998862574037--8986662-02699995588712127986699824666556752630766999627666554556
Q ss_pred ------CCHHHHHHHHHHHHHHHHHHHHHHHHCC----------CCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHH
Q ss_conf ------8978899999999999999999999249----------968985479769999999976957997069578999
Q 000605 142 ------NQLASFNTLLQQENDHLKMVISKIEALR----------PNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLER 205 (1397)
Q Consensus 142 ------~~~~sle~ii~qE~e~l~~~v~rI~~~~----------p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~Ler 205 (1397)
+...+++.++++|++++++++++|+.++ |+||+++|+|++.|++||.++||++++++++.+|+|
T Consensus 248 ~~~~~i~~~~~~~~~~~~E~~~~~~~v~~I~~~~~~v~~~~~g~~~vIi~~k~I~~~Al~~L~~~gI~~vr~v~~~~ler 327 (546)
T 3p9d_F 248 NSGFFYSSADQRDKLAASERKFVDAKLKKIIDLKNEVCGMDPDKGFVIINQKGIDPMSLDVFAKHNILALRRAKRRNMER 327 (546)
T ss_dssp CBCCCCCSSSCHHHHHHHHHHHHHHHHHHHHHCC-----------CEEEESSCCCHHHHHHHTTTTCEEECCCCHHHHHH
T ss_pred CCEEEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCEEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHH
T ss_conf 74499768999999999999999999999999999874201588649984676768999999988984681379888999
Q ss_pred HHHHHCCEECCCCCCCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHH
Q ss_conf 99996994714555689897410003999993163222323578997259999848998636999526999899999999
Q 000605 206 IARCTGALITPSIDNISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHV 285 (1397)
Q Consensus 206 Iar~Tga~Ii~sid~L~~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~ 285 (1397)
||++|||.++++++++.+..||+|+.|+++++++ ++++||+||+++.+|||+|||+++.+|+|+||+
T Consensus 328 ia~~tGa~ii~~l~~l~~~~LG~a~~v~~~~ig~-------------~~~~~i~g~~~~~~~tI~lrG~te~~l~E~kr~ 394 (546)
T 3p9d_F 328 LQLVTGGEAQNSVEDLSPQILGFSGLVYQETIGE-------------EKFTYVTENTDPKSCTILIKGSTHYALAQTKDA 394 (546)
T ss_dssp HHHTTTBCCCCCCSSCSTTCCBCCCCBCBCCCSS-------------CCCEECSSCSCCSCEEEECCCSCHHHHHHHHHH
T ss_pred HHHHHCCEEECCHHHCCHHHCCCCCEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHH
T ss_conf 9998598794562008986788562799998469-------------469999568997558999779877899999999
Q ss_pred HHHHHHHHHHHHCCCEEECCCCCCCCCC
Q ss_conf 9999999998230592660798445444
Q 000605 286 VQYAVFAAYHLSLETSFLADEGATLPKM 313 (1397)
Q Consensus 286 l~dal~v~~~~~le~~~l~ggGa~e~~~ 313 (1397)
++||++++++++.|+++||||||+|.+.
T Consensus 395 l~DAl~~~r~av~~~~iVpGGGa~e~~~ 422 (546)
T 3p9d_F 395 VRDGLRAVANVLKDKNIIPGAGAFYIAL 422 (546)
T ss_dssp HHHHHHHHHHHTTSCCEEETTTHHHHHH
T ss_pred HHHHHHHHHHHHCCCCEEECCCHHHHHH
T ss_conf 9999999999833995995887999999
No 10
>1a6d_A Thermosome (alpha subunit); group II chaperonin, CCT, TRIC, PR folding, ATPase, chaperonin; 2.60A {Thermoplasma acidophilum} SCOP: a.129.1.2 c.8.5.2 d.56.1.2 PDB: 1a6e_A*
Probab=1.00 E-value=1 Score=429.59 Aligned_cols=296 Identities=22% Similarity=0.323 Sum_probs=273.0
Q ss_pred CCCEEEECHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCC----------------CCCCCCHHHHHHHHHHHH
Q ss_conf 7421442403688876320999959999999999999999983887----------------766689225899999999
Q 000605 3 SSSSSLSSMFPAREKQNEGNKEPLRAVVQGHFRALVSELLRAEGIK----------------LGKEDSEEDWLGIITTIA 66 (1397)
Q Consensus 3 ~~~~~lagell~~a~~li~~~~~~~~i~~g~~~al~~qLl~~~~i~----------------~~~k~~~~~w~~~l~~l~ 66 (1397)
|++++||||||+++..++++|+||..|+.||.+|+...+..+.+++ +++|+. ..|.+.|++|+
T Consensus 97 TtvvvLA~~LL~~a~~ll~~GihP~~I~~G~~~A~~~a~~~L~~~s~~~~~~~~l~~va~tsl~sKi~-~~~~~~i~~li 175 (545)
T 1a6d_A 97 TTAVVLSGELLKQAETLLDQGVHPTVISNGYRLAVNEARKIIDEIAEKSTDDATLRKIALTALSGKNT-GLSNDFLADLV 175 (545)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHCEECCCHHHHHHHHHHHTTTSSC-CSTHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCC-CCCHHHHHHHH
T ss_conf 48999999999999999987998899999999999999999998627899999999999998735403-45477999999
Q ss_pred HHHHHCCCCCCCCCCCCCCCCCEEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCEECCCCEEEEEEECCCCCCC-----
Q ss_conf 998200276788999789678538997138998863479767993125778984100496099982101334576-----
Q 000605 67 WQAANFVKPDTSRGGSMDPGDYVKVKCIAKGSPNESTFIKGVVCTKNIKHKRMTSQYRNPRLLILGGALEYQRVP----- 141 (1397)
Q Consensus 67 ~~Av~~v~~~~~~~~~~Di~~~VkIkki~GG~~~dS~li~GvV~~K~~a~k~M~~~i~nprIlll~~~Ley~k~~----- 141 (1397)
++|+..|.++......+|+ ++|+|+|++||+..||++++|++|+|++.|+.||++++|||||+++|+|||++.+
T Consensus 176 vdAv~~v~~~~~g~~~~d~-~~I~V~k~~G~~~~ds~lv~G~v~dk~~~~~~m~~~ien~kIll~~~~Le~~k~e~~~~v 254 (545)
T 1a6d_A 176 VKAVNAVAEVRDGKTIVDT-ANIKVDKKNGGSVNDTQFISGIVIDKEKVHSKMPDVVKNAKIALIDSALEIKKTEIEAKV 254 (545)
T ss_dssp HHHHHHHCEESSSSEECCG-GGEEEEECCCSCSTTCEEESEEEESCCCSCTTSCSEEEEEEEEEECSCBSCCCCSSCCEE
T ss_pred HHHHHHHHCCCCCCCCCCC-CEEEEEEECCCCCEEEEEEEEEEEECCCCCCCCCCEECCCEEEEEECCCCCCCCCCCCEE
T ss_conf 9999997233678753434-317999955897200278840798225788998564058879999167775534678439
Q ss_pred --CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHCCCEEEECCCHHHHHHHHHHHCCEECCCCC
Q ss_conf --897889999999999999999999924996898547976999999997695799706957899999996994714555
Q 000605 142 --NQLASFNTLLQQENDHLKMVISKIEALRPNVLLVEKSVSSYAQDLLLAKEISLVLNVKRPLLERIARCTGALITPSID 219 (1397)
Q Consensus 142 --~~~~sle~ii~qE~e~l~~~v~rI~~~~p~VVlvek~Vs~~A~~~L~~~gI~vi~~Vk~~~LerIar~Tga~Ii~sid 219 (1397)
+...+++.++++|++|+..++++|++.|++||+++++|++.|+++|.++||++++++++.+|+|||++|||.++++++
T Consensus 255 ~i~~~~~l~~~~~~E~~~l~~~le~I~~~g~~lvi~~~~I~~~al~~L~~~~I~av~~~~k~~le~ia~~tGa~iis~l~ 334 (545)
T 1a6d_A 255 QISDPSKIQDFLNQETNTFKQMVEKIKKSGANVVLCQKGIDDVAQHYLAKEGIYAVRRVKKSDMEKLAKATGAKIVTDLD 334 (545)
T ss_dssp EECSTTHHHHHHHHHHHHHHHHHHHHHHTTCCEEEESSCBCHHHHHHHHHHTCEEECSCCHHHHHHHHHHHCCCEESSGG
T ss_pred EECCHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEECCCCCHHHHHHHHHCCEEEECCCCHHHHHHHHHHHCCEEECCCC
T ss_conf 96789999999999999999999999972998999878866899999998792675248999999999985992546603
Q ss_pred CCCCCCCCEEEEEEEEEECCCCCCCCCCCCCCCCEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 68989741000399999316322232357899725999984899863699952699989999999999999999982305
Q 000605 220 NISTTRLGHCELFKLEKVSEEHETSNQFNKKPSKTLMYFEGCPRRLGCMVLLRGKCREELKKVKHVVQYAVFAAYHLSLE 299 (1397)
Q Consensus 220 ~L~~~~LG~c~~f~v~~~~~e~~~~~~~g~~~~Kt~~~f~gc~~~~gcTIlLRG~s~~~L~evkr~l~dal~v~~~~~le 299 (1397)
++.+..||+|+.|++.++++ ++|++|+||..+..|||+|||+++.+|+|+||+++||++++++++.|
T Consensus 335 ~~~~~~LG~a~~v~~~~ig~-------------~~~~~~~g~~~~~~~TI~lrG~te~~l~E~kr~l~DAl~~~r~a~~~ 401 (545)
T 1a6d_A 335 DLTPSVLGEAETVEERKIGD-------------DRMTFVMGCKNPKAVSILIRGGTDHVVSEVERALNDAIRVVAITKED 401 (545)
T ss_dssp GCCGGGCEEEEEEEEEEETT-------------EEEEEEEEESCSSCEEEEECCSSSTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCHHHCCCCEEEEEEEECC-------------CEEEEEECCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 29987778862899999558-------------34999966888745899976898899999999999999999999868
Q ss_pred CEEECCCCCCCCCC
Q ss_conf 92660798445444
Q 000605 300 TSFLADEGATLPKM 313 (1397)
Q Consensus 300 ~~~l~ggGa~e~~~ 313 (1397)
+++|+||||+|...
T Consensus 402 g~iVpGGGa~e~~~ 415 (545)
T 1a6d_A 402 GKFLWGGGAVEAEL 415 (545)
T ss_dssp CEEEETTTHHHHHH
T ss_pred CCEEECCCHHHHHH
T ss_conf 98886857999999
Done!