Your job contains 1 sequence.
>000607
MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA
YLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH
EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL
PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY
KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG
VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK
FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK
YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC
SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM
YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC
PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP
IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV
ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID
YLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVC
TPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFH
VQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAV
NLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQ
NNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSL
FNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQ
FQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYL
ITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDS
FEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPET
MRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKV
ACKEVLKSLRASFPGT
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 000607
(1396 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2097705 - symbol:DCL2 "dicer-like 2" species:3... 4199 0. 1
UNIPROTKB|A7LFZ6 - symbol:DCL4 "Endoribonuclease Dicer ho... 836 2.1e-174 3
UNIPROTKB|Q8LMR2 - symbol:DCL1 "Endoribonuclease Dicer ho... 526 7.5e-155 7
TAIR|locus:2149259 - symbol:DCL4 "dicer-like 4" species:3... 897 7.3e-126 2
MGI|MGI:2177178 - symbol:Dicer1 "dicer 1, ribonuclease ty... 391 6.7e-105 6
UNIPROTKB|E9PU15 - symbol:Dicer1 "Protein Dicer1" species... 389 1.8e-104 6
UNIPROTKB|F1NJX0 - symbol:DICER1 "Endoribonuclease Dicer"... 392 1.8e-104 6
UNIPROTKB|Q25BN1 - symbol:DICER1 "Endoribonuclease Dicer"... 392 1.8e-104 6
UNIPROTKB|A0MQH0 - symbol:DICER1 "Endoribonuclease Dicer"... 390 4.7e-104 6
ZFIN|ZDB-GENE-030131-3445 - symbol:dicer1 "Dicer1, Dcr-1 ... 396 5.5e-104 6
UNIPROTKB|Q9UPY3 - symbol:DICER1 "Endoribonuclease Dicer"... 386 1.7e-103 6
UNIPROTKB|F1NP11 - symbol:DICER1 "Endoribonuclease Dicer"... 392 4.0e-103 6
UNIPROTKB|E2RIN4 - symbol:DICER1 "Uncharacterized protein... 387 2.8e-99 5
UNIPROTKB|F1MCQ5 - symbol:DICER1 "Endoribonuclease Dicer"... 386 3.8e-99 6
UNIPROTKB|B3DLA6 - symbol:dicer1 "Endoribonuclease Dicer"... 385 8.3e-97 5
UNIPROTKB|Q6TUI4 - symbol:DICER1 "Endoribonuclease Dicer"... 391 8.1e-95 5
WB|WBGene00000939 - symbol:dcr-1 species:6239 "Caenorhabd... 478 4.2e-84 4
POMBASE|SPCC188.13c - symbol:dcr1 "dicer" species:4896 "S... 375 6.5e-79 3
FB|FBgn0034246 - symbol:Dcr-2 "Dicer-2" species:7227 "Dro... 307 6.6e-76 6
FB|FBgn0039016 - symbol:Dcr-1 "Dicer-1" species:7227 "Dro... 348 5.6e-74 7
UNIPROTKB|I3L6Y9 - symbol:DICER1 "Uncharacterized protein... 313 6.7e-65 5
ASPGD|ASPL0000041548 - symbol:dclB species:162425 "Emeric... 297 6.2e-61 5
UNIPROTKB|A4RHU9 - symbol:DCL2 "Dicer-like protein 2" spe... 392 2.5e-57 4
UNIPROTKB|B3KRG4 - symbol:DICER1 "Endoribonuclease Dicer"... 386 9.6e-50 3
RGD|1309381 - symbol:Dicer1 "dicer 1, ribonuclease type I... 386 1.9e-40 2
TAIR|locus:504955425 - symbol:RTL1 "RNAse II-like 1" spec... 326 5.8e-28 1
DICTYBASE|DDB_G0289659 - symbol:rrpA "RNA-directed RNA po... 334 1.6e-24 2
TAIR|locus:2092409 - symbol:RTL2 "RNAse THREE-like protei... 288 6.5e-24 1
DICTYBASE|DDB_G0294407 - symbol:helF "DEAD/DEAH box helic... 305 1.1e-22 2
MGI|MGI:1918836 - symbol:Ifih1 "interferon induced with h... 211 1.7e-22 2
DICTYBASE|DDB_G0291249 - symbol:rrpB "RNA-directed RNA po... 206 2.7e-22 3
RGD|1310093 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box poly... 289 2.6e-21 2
UNIPROTKB|D4AC08 - symbol:Ifih1 "Protein Ifih1" species:1... 209 2.6e-21 2
RGD|1560496 - symbol:Ifih1 "interferon induced with helic... 209 3.0e-21 2
UNIPROTKB|E2RNK0 - symbol:IFIH1 "Uncharacterized protein"... 197 5.8e-20 2
UNIPROTKB|E1BJZ0 - symbol:IFIH1 "Uncharacterized protein"... 194 5.8e-20 2
MGI|MGI:1931560 - symbol:Dhx58 "DEXH (Asp-Glu-X-His) box ... 274 6.2e-20 1
UNIPROTKB|Q9BYX4 - symbol:IFIH1 "Interferon-induced helic... 194 2.5e-19 2
DICTYBASE|DDB_G0280963 - symbol:rrpC "RNA-directed RNA po... 289 3.5e-19 3
UNIPROTKB|Q5E9G8 - symbol:LGP2 "Putative uncharacterized ... 177 7.6e-19 2
UNIPROTKB|F1NDV4 - symbol:IFIH1 "Uncharacterized protein"... 207 1.3e-18 2
ZFIN|ZDB-GENE-120612-3 - symbol:dhx58 "DEXH (Asp-Glu-X-Hi... 242 1.7e-18 2
UNIPROTKB|E2QXT4 - symbol:DHX58 "Uncharacterized protein"... 176 2.5e-18 2
TAIR|locus:2153333 - symbol:RTL3 "RNAse THREE-like protei... 258 6.2e-18 1
UNIPROTKB|A2A376 - symbol:DDX58 "Probable ATP-dependent R... 170 2.2e-17 2
UNIPROTKB|E2RMV6 - symbol:DDX58 "Uncharacterized protein"... 166 2.7e-17 2
UNIPROTKB|B3KWW1 - symbol:DDX58 "cDNA FLJ44001 fis, clone... 170 3.5e-17 2
MGI|MGI:2442858 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) bo... 162 3.5e-17 2
UNIPROTKB|K7GMB7 - symbol:DHX58 "Uncharacterized protein"... 162 4.1e-17 2
UNIPROTKB|O95786 - symbol:DDX58 "Probable ATP-dependent R... 170 4.3e-17 2
UNIPROTKB|Q96C10 - symbol:DHX58 "Probable ATP-dependent R... 170 4.7e-17 2
UNIPROTKB|F1S0P6 - symbol:DHX58 "Uncharacterized protein"... 162 6.5e-17 2
ZFIN|ZDB-GENE-081104-438 - symbol:ifih1 "interferon induc... 247 1.0e-16 1
WB|WBGene00001090 - symbol:drh-1 species:6239 "Caenorhabd... 161 1.2e-16 2
UNIPROTKB|I3LGW3 - symbol:DDX58 "Probable ATP-dependent R... 163 1.3e-16 2
UNIPROTKB|Q9GLV6 - symbol:DDX58 "Probable ATP-dependent R... 160 2.5e-16 2
UNIPROTKB|F1MKU1 - symbol:DDX58 "Uncharacterized protein"... 165 3.1e-16 2
WB|WBGene00008400 - symbol:drh-3 species:6239 "Caenorhabd... 188 6.5e-16 3
ASPGD|ASPL0000054215 - symbol:dclA species:162425 "Emeric... 215 9.8e-16 2
POMBASE|SPAC20H4.04 - symbol:fml2 "ATP-dependent 3' to 5'... 201 3.3e-15 2
UNIPROTKB|D4A8D9 - symbol:Ddx58 "Protein Ddx58" species:1... 145 7.6e-15 2
UNIPROTKB|F5H5W6 - symbol:DDX58 "Probable ATP-dependent R... 170 8.8e-15 2
UNIPROTKB|G3MWK8 - symbol:DHX58 "Uncharacterized protein"... 142 1.1e-14 2
RGD|1309460 - symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box po... 145 1.5e-14 2
POMBASE|SPAC9.05 - symbol:fml1 "ATP-dependent 3' to 5' DN... 155 4.7e-14 2
FB|FBgn0038889 - symbol:CG7922 species:7227 "Drosophila m... 163 6.1e-12 5
TIGR_CMR|CHY_1444 - symbol:CHY_1444 "ribonuclease III" sp... 154 1.1e-11 2
UNIPROTKB|P0A7Y0 - symbol:rnc "RNase III" species:83333 "... 135 5.1e-11 2
UNIPROTKB|A4RN08 - symbol:MPH1 "ATP-dependent DNA helicas... 130 5.4e-11 4
TIGR_CMR|NSE_0918 - symbol:NSE_0918 "ribonuclease III" sp... 164 1.1e-10 1
TIGR_CMR|CJE_1807 - symbol:CJE_1807 "ribonuclease III" sp... 158 2.6e-10 2
DICTYBASE|DDB_G0274841 - symbol:fncM "ATP-dependent DNA h... 189 4.1e-10 2
ASPGD|ASPL0000062874 - symbol:AN10063 species:162425 "Eme... 137 1.1e-09 2
CGD|CAL0005976 - symbol:MPH1 species:5476 "Candida albica... 147 1.3e-09 3
MGI|MGI:2442306 - symbol:Fancm "Fanconi anemia, complemen... 126 1.7e-09 3
SGD|S000001441 - symbol:MPH1 "3'-5' DNA helicase involved... 134 2.3e-09 2
UNIPROTKB|Q8IYD8 - symbol:FANCM "Fanconi anemia group M p... 127 2.4e-09 4
TIGR_CMR|BA_3987 - symbol:BA_3987 "ribonuclease III" spec... 148 3.7e-09 2
UNIPROTKB|H0YJZ6 - symbol:DICER1 "Endoribonuclease Dicer"... 114 6.9e-09 3
UNIPROTKB|B2RTQ9 - symbol:FANCM "FANCM protein" species:9... 127 8.7e-09 4
UNIPROTKB|I3LJY5 - symbol:LOC100737466 "Uncharacterized p... 164 1.0e-08 1
TIGR_CMR|APH_1149 - symbol:APH_1149 "ribonuclease III" sp... 124 1.4e-08 2
TIGR_CMR|SO_1348 - symbol:SO_1348 "ribonuclease III" spec... 138 2.4e-08 2
UNIPROTKB|E2RNF7 - symbol:FANCM "Uncharacterized protein"... 124 2.8e-08 5
UNIPROTKB|J9P777 - symbol:FANCM "Uncharacterized protein"... 124 2.8e-08 5
UNIPROTKB|F1SI11 - symbol:FANCM "Uncharacterized protein"... 130 3.5e-08 4
DICTYBASE|DDB_G0274077 - symbol:drnA-2 "putative RNAse II... 128 9.0e-08 4
DICTYBASE|DDB_G0273051 - symbol:drnA-1 "putative RNAse II... 128 9.0e-08 4
UNIPROTKB|Q9KPB2 - symbol:rnc "Ribonuclease 3" species:24... 125 1.0e-07 2
TIGR_CMR|VC_2461 - symbol:VC_2461 "ribonuclease III" spec... 125 1.0e-07 2
TIGR_CMR|CPS_4122 - symbol:CPS_4122 "ribonuclease III" sp... 143 1.0e-07 2
UNIPROTKB|I3LAY7 - symbol:FANCM "Uncharacterized protein"... 130 1.3e-07 4
DICTYBASE|DDB_G0268410 - symbol:drnB "putative RNase III"... 151 1.6e-07 5
ZFIN|ZDB-GENE-090929-1 - symbol:fancm "Fanconi anemia, co... 127 1.8e-07 4
UNIPROTKB|J9NY43 - symbol:FANCM "Uncharacterized protein"... 124 3.0e-07 5
TIGR_CMR|ECH_1054 - symbol:ECH_1054 "ribonuclease III" sp... 140 4.7e-07 2
TIGR_CMR|CBU_1503 - symbol:CBU_1503 "ribonuclease III" sp... 128 1.2e-06 2
TIGR_CMR|CPS_4097 - symbol:CPS_4097 "ATP-dependent RNA he... 129 4.1e-06 2
UNIPROTKB|D4ADT5 - symbol:Ddx58 "Protein Ddx58" species:1... 145 4.5e-06 1
UNIPROTKB|Q61XX9 - symbol:drsh-1 "Ribonuclease 3" species... 129 7.5e-06 5
WARNING: Descriptions of 31 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2097705 [details] [associations]
symbol:DCL2 "dicer-like 2" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA;ISS]
[GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010216 "maintenance of DNA methylation"
evidence=IMP] [GO:0010267 "production of ta-siRNAs involved in RNA
interference" evidence=RCA;IMP] [GO:0051607 "defense response to
virus" evidence=RCA;IMP] [GO:0035196 "production of miRNAs involved
in gene silencing by miRNA" evidence=IGI;RCA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=RCA] [GO:0006306 "DNA
methylation" evidence=RCA] [GO:0006342 "chromatin silencing"
evidence=RCA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=RCA] [GO:0007267 "cell-cell signaling"
evidence=RCA] [GO:0009616 "virus induced gene silencing"
evidence=RCA] [GO:0009855 "determination of bilateral symmetry"
evidence=RCA] [GO:0010014 "meristem initiation" evidence=RCA]
[GO:0010050 "vegetative phase change" evidence=RCA] [GO:0010073
"meristem maintenance" evidence=RCA] [GO:0016569 "covalent
chromatin modification" evidence=RCA] [GO:0030422 "production of
siRNA involved in RNA interference" evidence=RCA] [GO:0031047 "gene
silencing by RNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0046872
GO:GO:0051607 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0010267 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 EMBL:AC012328 GO:GO:0010216 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ479970
EMBL:DQ479971 IPI:IPI00530074 IPI:IPI00852241 RefSeq:NP_001078101.1
RefSeq:NP_001189798.1 RefSeq:NP_566199.4 UniGene:At.43488
ProteinModelPortal:Q3EBC8 SMR:Q3EBC8 IntAct:Q3EBC8 STRING:Q3EBC8
PaxDb:Q3EBC8 PRIDE:Q3EBC8 EnsemblPlants:AT3G03300.1
EnsemblPlants:AT3G03300.3 GeneID:821300 KEGG:ath:AT3G03300
TAIR:At3g03300 HOGENOM:HOG000006099 InParanoid:Q3EBC8 OMA:TAIVLES
PhylomeDB:Q3EBC8 ProtClustDB:CLSN2694055 Genevestigator:Q3EBC8
Uniprot:Q3EBC8
Length = 1388
Score = 4199 (1483.2 bits), Expect = 0., P = 0.
Identities = 824/1397 (58%), Positives = 1029/1397 (73%)
Query: 1 MEPVSMESDTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA 60
M+ +ME++TT++VSA L FAR+YQ+EALE A+KQNTIVFLETGSGKTLIAIMLLRSYA
Sbjct: 3 MDADAMETETTDQVSASPLHFARSYQVEALEKAIKQNTIVFLETGSGKTLIAIMLLRSYA 62
Query: 61 YLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
YL RKPSP EA+KMHTDLKVG YWGDMGVDFWD +TWK+E+ K+
Sbjct: 63 YLFRKPSPCFCVFLVPQVVLVTQQAEALKMHTDLKVGMYWGDMGVDFWDSSTWKQEVDKY 122
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
EVLVMTP ILLD LR S+ L+MIKVLI+DECHHA GKH YACIM EFYH+ L +G SN+
Sbjct: 123 EVLVMTPAILLDALRHSFLSLSMIKVLIVDECHHAGGKHPYACIMREFYHKELNSGTSNV 182
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
PRIFGMTAS +K+K + + YW+KIH+LETLMNSKVYTC +ESVL+ F+PFST FK+Y
Sbjct: 183 PRIFGMTASLVKTKGENLDS-YWKKIHELETLMNSKVYTCENESVLAGFVPFSTPSFKYY 241
Query: 241 KYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELG 300
++ +IP L ++L + +KH SL LDLN + + + K++ +I+STL YCL +LG
Sbjct: 242 QHIKIPSPKRASLVEKLERLTIKHRLSLGTLDLNSSTVDSVEKRLLRISSTLTYCLDDLG 301
Query: 301 VWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK 360
+ LA KAA+++S ++D F W +L+ F ++KKF SDASQ + +P G WS+ + +
Sbjct: 302 ILLAQKAAQSLSASQNDSFLWGELNMFSVALVKKFCSDASQEFLAEIPQGLNWSVANING 361
Query: 361 FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTK 420
N ++GLLT K VCLIE+LL Y +E+IRCIIFV+RVITAIVL+SLL+E+LP WKTK
Sbjct: 362 -NAEAGLLTLKTVCLIETLLGYSSLENIRCIIFVDRVITAIVLESLLAEILPNCNNWKTK 420
Query: 421 YIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480
Y+AGNNSG+Q Q+RKKQNEIVE+FRRGLVN+IVATSILEEGLDVQSCNLVI FDP+ +C
Sbjct: 421 YVAGNNSGLQNQTRKKQNEIVEDFRRGLVNIIVATSILEEGLDVQSCNLVIRFDPASNIC 480
Query: 481 SFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHM 540
SFIQSRGRARMQNSDYL+MV+SGD TQSRL YL+ G +MR+E L H+ +PC PL +
Sbjct: 481 SFIQSRGRARMQNSDYLMMVESGDLLTQSRLMKYLSGGKRMREESLDHSLVPCPPLPDDS 540
Query: 541 YGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNC 600
E + VESTG TLSSSVSLIY YCSRLPSD YFKP P+F +NK+ G CTLYLP +C
Sbjct: 541 -DEPLFRVESTGATVTLSSSVSLIYHYCSRLPSDEYFKPAPRFDVNKDQGSCTLYLPKSC 599
Query: 601 PIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHP 660
P++ V A+ N K LKQA CL+AC +LH++GAL+D+L+PD+VV + +QK YN E P
Sbjct: 600 PVKEVKAEANNKVLKQAVCLKACIQLHKVGALSDHLVPDMVVAETVSQKLEKIQYNTEQP 659
Query: 661 IYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
YFPPELV+Q + TYH YLI +K + + +++L R LE +I +F LE
Sbjct: 660 CYFPPELVSQFSAQPETTYHFYLIRMKPNSPRNFHLNDVLLGTRVVLEDDIGNTSFRLED 719
Query: 721 ERGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID 780
RG + V L ++G L +VL CRRFQITLFRV++DH+++ L E L+G LRD + +D
Sbjct: 720 HRGTIAVTLSYVGAFHLTQEEVLFCRRFQITLFRVLLDHSVENLMEALNGLHLRDGVALD 779
Query: 781 YLLLPSTGQ----LIDWKTVATV-LFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIH 835
YLL+PST LIDW+ + +V L + KH NCST +RI+HTK G CTC +
Sbjct: 780 YLLVPSTHSHETSLIDWEVIRSVNLTSHEVLEKHE-NCSTNGASRILHTKDGLFCTCVVQ 838
Query: 836 NSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNG 895
N+LV TPHNG +YC GVL +LN NSL T+ N TY ++YEER+GIQL F EPLLNG
Sbjct: 839 NALVYTPHNGYVYCTKGVLNNLNGNSLLTKRNSGDQTYIEYYEERHGIQLNFVDEPLLNG 898
Query: 896 RRIFHVQNYLSKCRQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQS 955
R IF + +YL +++K+KE + ELPPELC +I++PIS+ YS+TF+PS+M R++S
Sbjct: 899 RHIFTLHSYLHMAKKKKEKEHDREFVELPPELCHVILSPISVDMIYSYTFIPSVMQRIES 958
Query: 956 XXXXXXXXXXXXDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQL 1015
+ V IPTIKVLEAITTKKC++ FHLESLETLGDSFLKYA QQL
Sbjct: 959 LLIAYNLKKS-----IPKVNIPTIKVLEAITTKKCEDQFHLESLETLGDSFLKYAVCQQL 1013
Query: 1016 FKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYEL 1075
F+ +HEGLLS KK+ +ISN LC+ GC+QKL GFIR E F+PK W++PG +S +Y L
Sbjct: 1014 FQHCHTHHEGLLSTKKDGMISNVMLCQFGCQQKLQGFIRDECFEPKGWMVPGQSSAAYSL 1073
Query: 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNV 1135
+D+L R IYV R+ +K K+VADVVE+LIGA+LS GGE L+F++ +GIKVDF
Sbjct: 1074 VNDTLPESRNIYVASRRNLKRKSVADVVESLIGAYLSEGGELAALMFMNWVGIKVDFTTT 1133
Query: 1136 PYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDA 1195
QR + AE+LVNV ++ESLLNYSF D SLLVEALTHGSYM+PEIPRCYQRLEFLGD+
Sbjct: 1134 KIQRDSPIQAEKLVNVGYMESLLNYSFEDKSLLVEALTHGSYMMPEIPRCYQRLEFLGDS 1193
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN 1255
VLDYLIT +LY+KYP LSPG LTDMRSASVNN+CYAL +VK LHKHIL+ASH L+K I+
Sbjct: 1194 VLDYLITKHLYDKYPCLSPGLLTDMRSASVNNECYALVAVKANLHKHILYASHHLHKHIS 1253
Query: 1256 ITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPM 1315
TV FE+ SL STFGWES SFPK LGD+IESLAGAIFVDSG N+EVVF SI+PLL M
Sbjct: 1254 RTVSEFEQSSLQSTFGWESDISFPKVLGDVIESLAGAIFVDSGYNKEVVFASIKPLLGCM 1313
Query: 1316 ITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKK 1375
ITPET++ HPVRELTE CQK F + K A + TVEV+A F HT +DKK
Sbjct: 1314 ITPETVKLHPVRELTELCQKWQFELSK--AKDFD---SFTVEVKAKEMSFAHTAKASDKK 1368
Query: 1376 TAKKVACKEVLKSLRAS 1392
AKK+A KEVL L+ S
Sbjct: 1369 MAKKLAYKEVLNLLKNS 1385
>UNIPROTKB|A7LFZ6 [details] [associations]
symbol:DCL4 "Endoribonuclease Dicer homolog 4"
species:39947 "Oryza sativa Japonica Group" [GO:0009944 "polarity
specification of adaxial/abaxial axis" evidence=IMP] [GO:0010267
"production of ta-siRNAs involved in RNA interference"
evidence=IDA] [GO:0010492 "maintenance of shoot apical meristem
identity" evidence=IMP] [GO:0048608 "reproductive structure
development" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005634
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010492 GO:GO:0010267 EMBL:AL606607 EMBL:AP008210
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0009944
GO:GO:0008026 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 HOGENOM:HOG000083706
EMBL:EU009924 EMBL:AB353922 EMBL:AK066586 RefSeq:NP_001053278.1
UniGene:Os.27988 GeneID:4336362 KEGG:osa:4336362 Gramene:A7LFZ6
ProtClustDB:CLSN2694920 GO:GO:0048608 Uniprot:A7LFZ6
Length = 1657
Score = 836 (299.3 bits), Expect = 2.1e-174, Sum P(3) = 2.1e-174
Identities = 233/752 (30%), Positives = 384/752 (51%)
Query: 679 YHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVERGRLT-VNLKHLGRIQL 737
Y+ I + + Y + ++ + E E+ + DL + RGR+ +KHLG+I
Sbjct: 721 YYVKFIPIPEDRRYQMFGLFVINPLPVEAET----LQVDLHLARGRIVKAGIKHLGKIAF 776
Query: 738 IPNQVLLCRRFQITLFRVIMDHNLDKLNEILDGFELRDNLEID---YLLLPSTGQ----- 789
+++L +FQ ++++D + + G ++ LEI+ YLLLP +
Sbjct: 777 EKEKMMLAHKFQEMCLKILLDRSEFTSPHVKLGNDV--TLEINSTFYLLLPIKQKCYGDR 834
Query: 790 -LIDWKTVATVLFPRDNGSKHNMNCSTMFNAR-IVHTKSGPLCTCKIHNSLVCTPHNGQI 847
+IDW V L +++ +++ + G + S+V +PHN
Sbjct: 835 FMIDWPAVERCLSSPIFKDPIDVSVHASYSSNESLRLLDGIFSKTDVVGSVVFSPHNNIF 894
Query: 848 YCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYL-S 906
+ + G+L +NA ++ ++G+ TY +H++ER+ I+L +PLL ++IF+++N L +
Sbjct: 895 FFVDGILDEINA---WSEHSGA--TYAEHFKERFRIELSHPEQPLLKAKQIFNLRNLLHN 949
Query: 907 KCRQQKQKEPSKI--SF-ELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXX 963
+ + + E ++ F ELPPELC + + S S + +PS+M+RL++
Sbjct: 950 RLPETTESEGRELLEHFVELPPELCSLKVIGFSKDMGSSLSLLPSLMYRLENLLVAIELK 1009
Query: 964 XXXXDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNH 1023
+ I +LEA+TT+KC E LE E LGD+FLKY + F TY+
Sbjct: 1010 DVMLSSFPEASQISASGILEALTTEKCLERISLERFEVLGDAFLKYVVGRHKFITYEGLD 1069
Query: 1024 EGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGD------NSG------ 1071
EG L+ ++ +++N+ L +L +KL +IR + F+P + PG N+
Sbjct: 1070 EGQLTRRRSDVVNNSHLYELSIRKKLQVYIRDQQFEPTQFFAPGRPCKVVCNTDVEVRLH 1129
Query: 1072 SYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVD 1131
+++ D+ N + K +ADVVE+LIGAFL GG FL IGI VD
Sbjct: 1130 QMDIHPDNRENCNLRCTRSHHWLHRKVIADVVESLIGAFLVEGGFKAAFAFLHWIGIDVD 1189
Query: 1132 FVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEAL----THGSYML-----PEI 1182
F N P ++V +N+ SL++Y+ D + L E + H +L P
Sbjct: 1190 FNN-P--ALYRVLDSSSINL----SLMDYT--DIAGLEELIGYKFKHKGLLLQAFVHPSF 1240
Query: 1183 PR----CYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHG 1238
+ CYQRLEFLGDAVL+Y+IT YLY+ YP + PG +TD+RS +V ND A ++V+
Sbjct: 1241 SQHSGGCYQRLEFLGDAVLEYVITSYLYSTYPDIKPGQITDLRSLAVGNDSLAYAAVEKS 1300
Query: 1239 LHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
+HKH++ S+ L I+ + + KLS E + PKALGDI+ES GA+ +DSG
Sbjct: 1301 IHKHLIKDSNHLTSAIS-KFEMYVKLSNSEKDLLEE-PACPKALGDIVESCIGAVLLDSG 1358
Query: 1299 CNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEV 1358
N V++ + LL+P++T M +P+REL E CQ + F + P + G+ V VEV
Sbjct: 1359 FNLNYVWKVMLMLLKPVLTFANMHTNPMRELRELCQCHGFELGLPKPMKADGEYHVKVEV 1418
Query: 1359 QANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
++ T + + K A+K A +E L L+
Sbjct: 1419 NIKSKIIICTAANRNSKAARKFAAQETLSKLK 1450
Score = 651 (234.2 bits), Expect = 2.1e-174, Sum P(3) = 2.1e-174
Identities = 194/623 (31%), Positives = 320/623 (51%)
Query: 194 KVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHA-LYTH 252
K S++ +Y + I+ LE L+++KV + +E L + + ++ + Y Y + H+ L T
Sbjct: 226 KGGSNKLNYTKCINSLEELLHAKVCSVDNEE-LESVV--ASPDMEVYFYGPVNHSNLTTI 282
Query: 253 LADELAMIELKHTRSLE-NL-DLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAET 310
EL ++L+ R L +L D ++Q +L K + +++ +++CL ELG + AL+AA T
Sbjct: 283 CIKELDSLKLQSERMLRASLCDFKDSQKKL--KSLWRLHENIIFCLQELGSFGALQAART 340
Query: 311 ISCYESDFFAWEQLDGFGET--IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLL 368
++ D ++D G T + + A+ L G+ D K L+
Sbjct: 341 FLSFDGDKLDRREVDLNGSTSSFAHHYLNGATSILSRNKTDGSHAGSFDLEK--LEEPFF 398
Query: 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT--WKTKYIAGNN 426
+ K LI L Y E+++CI+FV+R+ A + ++L L C WK +++ G +
Sbjct: 399 SNKFSVLINVLSRYGLQENMKCIVFVKRITVARAISNILQNL---KCLEFWKCEFLVGCH 455
Query: 427 SGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486
SG + SR K + IV+ F G VN++VATS+ EEGLD+Q+C LV+ FD TV SFIQSR
Sbjct: 456 SGSKNMSRNKMDAIVQRFSSGEVNLLVATSVGEEGLDIQTCCLVVRFDLPETVASFIQSR 515
Query: 487 GRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYG---E 543
GRARM S Y+++++ + + + L Y+A + M +E+ S S N M+ E
Sbjct: 516 GRARMTKSKYVVLLERENQSHEKLLNGYIAGESIMNEEIDSRTS-------NDMFDCLEE 568
Query: 544 DFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKF-HINKEMGI-CTLYLPNNCP 601
+ Y V++TG + + SVSL++ YC LP D +F P+P F +I+ GI C L LP N
Sbjct: 569 NIYQVDNTGASISTACSVSLLHCYCDNLPRDMFFTPSPVFFYIDGIEGIICRLILPPNAA 628
Query: 602 IQTVIAQGNIKT--LKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYN-AE 658
+ Q + K+ ACL+AC KLH++GALTD LLP K+ N N E
Sbjct: 629 FRQADGQPCLSKDEAKRDACLKACVKLHKLGALTDFLLPGPGSRKNKVSVTNNSSNNKVE 688
Query: 659 --------HPIYFPPELVNQSPQ-DTKITYHCYLIE---LKQHFNYDISARNIVLAMRTE 706
H + P L + D+ H Y ++ + + Y + ++ + E
Sbjct: 689 DDSLREELHEMLIPAVLKPSGLKLDSLSNLHFYYVKFIPIPEDRRYQMFGLFVINPLPVE 748
Query: 707 LESEIKKVNFDLEVERGRLT-VNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLN 765
E+ + DL + RGR+ +KHLG+I +++L +FQ ++++D +
Sbjct: 749 AET----LQVDLHLARGRIVKAGIKHLGKIAFEKEKMMLAHKFQEMCLKILLDRSEFTSP 804
Query: 766 EILDGFELRDNLEID---YLLLP 785
+ G ++ LEI+ YLLLP
Sbjct: 805 HVKLGNDV--TLEINSTFYLLLP 825
Score = 346 (126.9 bits), Expect = 2.1e-174, Sum P(3) = 2.1e-174
Identities = 80/191 (41%), Positives = 106/191 (55%)
Query: 17 DTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXX 76
D AR YQL+ + A+++N IV+L TG GKT IA++L+ +L+RKPS
Sbjct: 25 DPRTIARKYQLDLCKRAVEENIIVYLGTGCGKTHIAVLLIYELGHLIRKPSREVCIFLAP 84
Query: 77 XXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL 136
I TD KV Y+G+ G + D W+ +M + EVLVMTPQILL LR
Sbjct: 85 TIPLVRQQAVVIASSTDFKVQCYYGN-GKNSRDHQEWENDMREFEVLVMTPQILLQSLRH 143
Query: 137 SYFKLNMIKVLILDECHHARG--KHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194
+ K+N I +LILDECHHA+ +H YA IM EFY+ PR+FGMTASPI K
Sbjct: 144 CFIKMNSIALLILDECHHAQPQKRHPYAQIMKEFYN---SNSVEKFPRVFGMTASPIIGK 200
Query: 195 VSSSEQDYWQK 205
+ +K
Sbjct: 201 GVMPSHSFTEK 211
Score = 44 (20.5 bits), Expect = 2.6e-24, Sum P(3) = 2.6e-24
Identities = 14/59 (23%), Positives = 25/59 (42%)
Query: 571 LPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQI 629
+ +DG + + +I ++ ICT N+ + AQ + LK K L +I
Sbjct: 1406 MKADGEYHVKVEVNIKSKIIICTAANRNSKAARKFAAQETLSKLKNYGYKHRNKSLEEI 1464
Score = 39 (18.8 bits), Expect = 6.2e-110, Sum P(3) = 6.2e-110
Identities = 12/46 (26%), Positives = 20/46 (43%)
Query: 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIES 378
+K G Q L+ ++P G + N LL K VC +++
Sbjct: 210 EKGGRSPCQPLIFFLPKGGSNKLNYTKCINSLEELLHAK-VCSVDN 254
Score = 37 (18.1 bits), Expect = 3.0e-78, Sum P(2) = 3.0e-78
Identities = 12/30 (40%), Positives = 13/30 (43%)
Query: 162 ACIMTEFYHRLLETGDSNLPRIFGMTASPI 191
A I T LL NLPR T SP+
Sbjct: 578 ASISTACSVSLLHCYCDNLPRDMFFTPSPV 607
>UNIPROTKB|Q8LMR2 [details] [associations]
symbol:DCL1 "Endoribonuclease Dicer homolog 1"
species:39947 "Oryza sativa Japonica Group" [GO:0007275
"multicellular organismal development" evidence=IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
Pfam:PF00035 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0007275
GO:GO:0005524 GO:GO:0005634 GO:GO:0046872 Gene3D:3.30.160.20
EMBL:DP000009 EMBL:AP008209 GO:GO:0003725 GO:GO:0090305
GO:GO:0004386 SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM000140 EMBL:AC105363 RefSeq:NP_001048796.2
UniGene:Os.13488 HSSP:P66666 ProteinModelPortal:Q8LMR2 PRIDE:Q8LMR2
EnsemblPlants:LOC_Os03g02970.1 GeneID:4331440
KEGG:dosa:Os03t0121800-00 KEGG:dosa:Os03t0121901-00
KEGG:osa:4331440 Gramene:Q8LMR2 eggNOG:COG1111 HOGENOM:HOG000239675
KO:K11592 OMA:ITHASRP GO:GO:0004525 GO:GO:0035196
Gene3D:1.10.1520.10 SUPFAM:SSF69065 Uniprot:Q8LMR2
Length = 1883
Score = 526 (190.2 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 125/290 (43%), Positives = 182/290 (62%)
Query: 366 GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGN 425
G +T ++ LI+ LL+Y+ ED R IIFVERV+TA+VL +L+EL P + + G+
Sbjct: 620 GKVTPRVQALIKILLKYQHTEDFRAIIFVERVVTALVLPKVLAEL-PSLSFIRCASLIGH 678
Query: 426 NSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQS 485
N+ + ++ + Q+ I +FR G V ++VATS+ EEGLD++ CN+VI FD ++TV ++IQS
Sbjct: 679 NNNQEMRACQMQDTI-SKFRDGRVTLLVATSVAEEGLDIRQCNVVIRFDLAKTVLAYIQS 737
Query: 486 RGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV-----LSH--ASLPCSPLNN 538
RGRAR SDY+LM++ G+ + ++ L N S +RKE LSH + SP++
Sbjct: 738 RGRARKPGSDYILMLERGNISHETFLRNARNSEETLRKEAMERTDLSHLDGTSVLSPVDT 797
Query: 539 HMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK--EMG-----I 591
G Y VESTG + +L+S+V LI+FYCS+LPSD Y P+F + K + G
Sbjct: 798 SP-GS-MYQVESTGAVVSLNSAVGLIHFYCSQLPSDRYSILHPEFIMQKYEKPGGSVEYS 855
Query: 592 CTLYLPNNCPIQTVIAQ--GNIKTLKQAACLEACKKLHQIGALTDNLLPD 639
C L LP N P + + +I+ +QA CL ACKKLH++GA TD LLPD
Sbjct: 856 CKLQLPCNAPFEKLEGPICSSIRLAQQAVCLAACKKLHEMGAFTDTLLPD 905
Score = 522 (188.8 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 130/304 (42%), Positives = 184/304 (60%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGI--KVDFVNVPYQRQFQVHAE--RLV 1149
+ SKT+ADVVEALIG + GG+ + IGI ++D +P + + + R +
Sbjct: 1477 LSSKTLADVVEALIGVYYVAGGKIAANHLMKWIGIHAELDPEEIPPPKPYDIPESIMRSI 1536
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
N L+ +L F++ LLVEA+TH S + CYQRLEF+GDAVLD+LIT +L+ Y
Sbjct: 1537 NFDTLKGVLGIEFQNKGLLVEAITHASRPSSGVS-CYQRLEFVGDAVLDHLITRHLFFTY 1595
Query: 1210 PGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEK--LSLG 1267
L PG LTD+R+A+VNN+ +A +VKH LH H+ H S L +I V ++ L G
Sbjct: 1596 TDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHGSSALETQIREFVKDVQEELLKPG 1655
Query: 1268 -STFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPV 1326
++FG + PK LGDI+ES+AGAIF+DSG + VV++ +PLL PM+TPET+ HPV
Sbjct: 1656 FNSFGLGDCKA-PKVLGDIVESIAGAIFLDSGYDTSVVWKVFQPLLHPMVTPETLPMHPV 1714
Query: 1327 RELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVL 1386
REL E CQ+ ++ ASR +G A TVEV +G + KK A+K+A + L
Sbjct: 1715 RELQERCQQQAEGLEYK-ASR-AGNIA-TVEVFVDGVQIG-VAQNPQKKMAQKLAARNAL 1770
Query: 1387 KSLR 1390
L+
Sbjct: 1771 VVLK 1774
Score = 286 (105.7 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 69/243 (28%), Positives = 120/243 (49%)
Query: 838 LVCTPHNGQIYCITGVLGHLNANSLFTRNNGSV-----TTYKKHYEERYGIQLCFDREPL 892
+V H+G+ + + + ++NA + F R G + ++Y +Y+++YG++L + ++PL
Sbjct: 1189 VVTAAHSGKRFYVDCICYNMNAENSFPRKEGYLGPLEYSSYADYYKQKYGVELIYRKQPL 1248
Query: 893 LNGRRIFHVQNYLSKCRQQKQKEPSKISFEL--------PPELCRIIMAPISLSTFYSFT 944
+ R + + +N LS + S L PPELC ++ P+ S
Sbjct: 1249 IRARGVSYCKNLLSPRFEHSDAREGDFSENLDKTYYVYLPPELC--LVHPLPGSLVRGAQ 1306
Query: 945 FVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGD 1004
+PSIM R++S D+ +P K+LEA+T CQE E E LGD
Sbjct: 1307 RLPSIMRRVESMLLAVQLKDII-DY-----PVPATKILEALTAASCQETLCYERAELLGD 1360
Query: 1005 SFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWI 1064
++LK+ S+ LF Y HEG L+ +++++SN L + + L +I+ + F P W
Sbjct: 1361 AYLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSNMVLYQYALNKTLQSYIQADRFAPSRWA 1420
Query: 1065 IPG 1067
PG
Sbjct: 1421 APG 1423
Score = 239 (89.2 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 52/112 (46%), Positives = 71/112 (63%)
Query: 120 HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN 179
++VLVMT QILL+ LR S K++ I +LILDECHHA KH Y+ +M+EFYH T
Sbjct: 328 YQVLVMTAQILLNILRHSIIKMDAIHLLILDECHHAVKKHPYSLVMSEFYHT---TPKEK 384
Query: 180 LPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIP 231
P +FGMTASP+ K +S++D KI +LE+ ++S V T L +P
Sbjct: 385 RPAVFGMTASPVNLKGVTSQEDCAIKIRNLESKLDSVVCTIKDRKELEKHVP 436
Score = 129 (50.5 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 25/37 (67%), Positives = 31/37 (83%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRS 58
AR YQLE LE A +NTI FLETG+GKTLIA++L++S
Sbjct: 267 ARQYQLEVLEQAKSRNTIAFLETGAGKTLIAVLLIKS 303
Score = 114 (45.2 bits), Expect = 1.2e-86, Sum P(7) = 1.2e-86
Identities = 35/92 (38%), Positives = 52/92 (56%)
Query: 1145 AERLVNV-RHLES-LLNYSFRD------PSL-LVEALTHGSYMLPEIPRCYQRLEFLGDA 1195
A+RL ++ R +ES LL +D P+ ++EALT S + CY+R E LGDA
Sbjct: 1305 AQRLPSIMRRVESMLLAVQLKDIIDYPVPATKILEALTAASC---QETLCYERAELLGDA 1361
Query: 1196 VLDYLITVYLYNKYPGLSPGYLTDMRSASVNN 1227
L ++++ +L+ KYP G LT MR V+N
Sbjct: 1362 YLKWVVSRFLFLKYPQKHEGQLTRMRQQMVSN 1393
Score = 92 (37.4 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 19/66 (28%), Positives = 37/66 (56%)
Query: 698 NIVLAMRTELESEIKKVNFDLEVERGRLT-VNLKHLGRIQLIPNQVLLCRRFQITLFRVI 756
N + EL++E+ DL V R +T +L GRI++ +Q++L + F + L ++
Sbjct: 984 NFAIIFGNELDAEVLSTTMDLFVARTMITKASLVFRGRIEITESQLVLLKSFHVRLMSIV 1043
Query: 757 MDHNLD 762
+D ++D
Sbjct: 1044 LDVDVD 1049
Score = 79 (32.9 bits), Expect = 4.9e-83, Sum P(7) = 4.9e-83
Identities = 30/119 (25%), Positives = 56/119 (47%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE +GD+ L + ++ LF TY + G L+ + ++N ++ + KL +R
Sbjct: 1573 QRLEFVGDAVLDHLITRHLFFTYTDLPPGRLTDLRAAAVNNENFARVAVKHKLHVHLRHG 1632
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTG 1114
S + I ++ ++ L G + G K K + D+VE++ GA FL +G
Sbjct: 1633 SSALETQI----REFVKDVQEELLKPGFNSFGLGDCKAP-KVLGDIVESIAGAIFLDSG 1686
Score = 71 (30.1 bits), Expect = 7.5e-155, Sum P(7) = 7.5e-155
Identities = 25/76 (32%), Positives = 40/76 (52%)
Query: 261 ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAET-ISCYESDFF 319
EL+ + ++ A LI+K + IN Y L ELG W A K A++ ++ ++D
Sbjct: 491 ELRLVYGVSERTESDGAANLIQK-LRAIN----YALGELGQWCAYKVAQSFLTALQNDER 545
Query: 320 AWEQLD-GFGETIIKK 334
A Q+D F E+ +KK
Sbjct: 546 ANYQVDVKFQESYLKK 561
Score = 37 (18.1 bits), Expect = 5.7e-124, Sum P(6) = 5.7e-124
Identities = 8/26 (30%), Positives = 14/26 (53%)
Query: 644 KHDAQKRGNEPYNAE--HPIYFPPEL 667
+H + G+ N + + +Y PPEL
Sbjct: 1266 EHSDAREGDFSENLDKTYYVYLPPEL 1291
Score = 37 (18.1 bits), Expect = 2.0e-104, Sum P(7) = 2.0e-104
Identities = 11/56 (19%), Positives = 26/56 (46%)
Query: 1341 KKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKS--LRASFP 1394
+K +A +++ + A+ V + + D +KK ++ ++ L LR +P
Sbjct: 1757 QKKMAQKLAARNALVVLKEKETATKKEDERDGEKKNGAQMFTRQTLNDICLRRQWP 1812
>TAIR|locus:2149259 [details] [associations]
symbol:DCL4 "dicer-like 4" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA;ISS] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005622 "intracellular"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISM;IDA] [GO:0006396
"RNA processing" evidence=ISS;RCA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0016891 "endoribonuclease activity, producing
5'-phosphomonoesters" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0010050 "vegetative phase change"
evidence=RCA;IMP] [GO:0010267 "production of ta-siRNAs involved in
RNA interference" evidence=RCA;IMP] [GO:0010216 "maintenance of DNA
methylation" evidence=IMP] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=RCA;IMP] [GO:0051607
"defense response to virus" evidence=RCA;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IGI;RCA] [GO:0009616 "virus induced gene silencing"
evidence=IGI;RCA] [GO:0010599 "production of lsiRNA involved in RNA
interference" evidence=IMP] [GO:0006353 "DNA-dependent
transcription, termination" evidence=IMP] [GO:0000278 "mitotic cell
cycle" evidence=RCA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=RCA] [GO:0006306 "DNA methylation" evidence=RCA]
[GO:0006342 "chromatin silencing" evidence=RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0007267 "cell-cell signaling" evidence=RCA] [GO:0009640
"photomorphogenesis" evidence=RCA] [GO:0009793 "embryo development
ending in seed dormancy" evidence=RCA] [GO:0009845 "seed
germination" evidence=RCA] [GO:0009909 "regulation of flower
development" evidence=RCA] [GO:0009933 "meristem structural
organization" evidence=RCA] [GO:0010162 "seed dormancy process"
evidence=RCA] [GO:0010182 "sugar mediated signaling pathway"
evidence=RCA] [GO:0010228 "vegetative to reproductive phase
transition of meristem" evidence=RCA] [GO:0016567 "protein
ubiquitination" evidence=RCA] [GO:0016569 "covalent chromatin
modification" evidence=RCA] [GO:0019915 "lipid storage"
evidence=RCA] [GO:0031047 "gene silencing by RNA" evidence=RCA]
[GO:0043687 "post-translational protein modification" evidence=RCA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=RCA] [GO:0050826 "response to freezing" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00035 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170
Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358
SMART:SM00490 SMART:SM00535 SMART:SM00949 InterPro:IPR014720
GO:GO:0005524 GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
GO:GO:0010599 GO:GO:0010267 GO:GO:0010050 EMBL:AF296825
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0010216 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:DQ118423 IPI:IPI00521227
RefSeq:NP_197532.3 UniGene:At.31201 PDB:2KOU PDBsum:2KOU
ProteinModelPortal:P84634 SMR:P84634 MINT:MINT-6948367
STRING:P84634 PaxDb:P84634 PRIDE:P84634 EnsemblPlants:AT5G20320.1
GeneID:832154 KEGG:ath:AT5G20320 TAIR:At5g20320
HOGENOM:HOG000083706 InParanoid:P84634 OMA:RNLLHNR PhylomeDB:P84634
ProtClustDB:CLSN2702253 EvolutionaryTrace:P84634
Genevestigator:P84634 GO:GO:0006353 GO:GO:0009616 Uniprot:P84634
Length = 1702
Score = 897 (320.8 bits), Expect = 7.3e-126, Sum P(2) = 7.3e-126
Identities = 265/824 (32%), Positives = 413/824 (50%)
Query: 9 DTTEEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSP 68
D + ++ D AR YQ+E + A ++N IV+L TG GKT IA+ML+ +L+ P
Sbjct: 111 DPSPKMEKDPRKIARRYQVELCKKATEENVIVYLGTGCGKTHIAVMLIYELGHLVLSPKK 170
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
+ I + KV + G + + W+ E++ +EVLVMTPQ
Sbjct: 171 SVCIFLAPTVALVEQQAKVIADSVNFKVAIHCGGKRI-VKSHSEWEREIAANEVLVMTPQ 229
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHAR--GKHQYACIMTEFYHRLLETGDSNLPRIFGM 186
ILL L+ + K+ I +LI DECHHA+ H YA IM FY ++ PRIFGM
Sbjct: 230 ILLHNLQHCFIKMECISLLIFDECHHAQQQSNHPYAEIMKVFY----KSESLQRPRIFGM 285
Query: 187 TASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246
TASP+ K S ++ + I+ LE L+N+KVY+ S L F+ K +Y+ +
Sbjct: 286 TASPVVGKGSFQSENLSKSINSLENLLNAKVYSVESNVQLDGFVSSPLVKVYYYR-SALS 344
Query: 247 HALYTHLADELAMIELKHT--RSLENL-DLNEAQAELIRKKVSK-INSTLLYCLSELGVW 302
A + + E + ++K SL+ L D ++ Q L K++ K + L+Y L LG+W
Sbjct: 345 DASQSTIRYENMLEDIKQRCLASLKLLIDTHQTQTLLSMKRLLKRSHDNLIYTLLNLGLW 404
Query: 303 LALKAAETISCYESDFFAWEQLDGFG--ETIIKKFGSDASQALVTYVPSGAEWSIGDD-- 358
A++AA+ I SD ++ G I + S A++AL + V S D
Sbjct: 405 GAIQAAK-IQL-NSDHNVQDEPVGKNPKSKICDTYLSMAAEALSSGVAKDENAS---DLL 459
Query: 359 SKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL-LPRHCTW 417
S L L + K+V LI+ L +R ++CIIFV R++TA L +L+ L L R +W
Sbjct: 460 SLAALKEPLFSRKLVQLIKILSVFRLEPHMKCIIFVNRIVTARTLSCILNNLELLR--SW 517
Query: 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477
K+ ++ G +SG++ SR+ I++ F+ +N++VAT + EEGLD+Q+C LVI +D
Sbjct: 518 KSDFLVGLSSGLKSMSRRSMETILKRFQSKELNLLVATKVGEEGLDIQTCCLVIRYDLPE 577
Query: 478 TVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLN 537
TV SFIQSRGRARM S+Y +V SG+ +EN+ + ++M E+ +S P
Sbjct: 578 TVTSFIQSRGRARMPQSEYAFLVDSGNEKEMDLIENFKVNEDRMNLEITYRSSEETCP-- 635
Query: 538 NHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK--EMG--ICT 593
E+ Y V TG + SS+SL+Y YCSRLP D +F+P P+F E G IC
Sbjct: 636 --RLDEELYKVHETGACISGGSSISLLYKYCSRLPHDEFFQPKPEFQFKPVDEFGGTICR 693
Query: 594 LYLPNNCPIQTVIAQ--GNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRG 651
+ LP N PI + + + + K+ ACL+A +LH +G L D LLPD E D
Sbjct: 694 ITLPANAPISEIESSLLPSTEAAKKDACLKAVHELHNLGVLNDFLLPDSKDEIEDELSDD 753
Query: 652 NEPYN-------AEHPIYFP--PELVNQS--PQDTKITYHCYLIELKQHFNYDISARNIV 700
++ + +Y P L Q P + + H Y I H D +
Sbjct: 754 EFDFDNIKGEGCSRGDLYEMRVPVLFKQKWDPSTSCVNLHSYYIMFVPH-PADRIYKKFG 812
Query: 701 LAMRTELESEIKKVNFDLEVERGR-LTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDH 759
M++ L E + ++ DL + R ++V + G + +++ L FQ +V+ +
Sbjct: 813 FFMKSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFER 872
Query: 760 NLDKLNEILDGFELRDNLEID----YLLLPSTGQLIDWKTVATV 799
+ + + + EL+D+ YLLLP L D ++V +V
Sbjct: 873 G-ELIPDFVP-LELQDSSRTSKSTFYLLLPLC--LHDGESVISV 912
Score = 423 (154.0 bits), Expect = 7.3e-126, Sum P(2) = 7.3e-126
Identities = 111/308 (36%), Positives = 162/308 (52%)
Query: 1090 GRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQ------RQFQV 1143
G + KT+ADVVEAL+GAFL G + FL IG+ VDF ++ Q R++
Sbjct: 1226 GHHWLYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQDACIASRRYLP 1285
Query: 1144 HAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITV 1203
R N+ LE+ L+Y F LLV+A H SY CYQRLEFLGDAVLDYL+T
Sbjct: 1286 LTTRN-NLETLENQLDYKFLHKGLLVQAFIHPSYNRHG-GGCYQRLEFLGDAVLDYLMTS 1343
Query: 1204 YLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEK 1263
Y + +P L PG LTD+RS SVNN+ A +V L + + S L++ I +
Sbjct: 1344 YFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCESIYLHEVIEDYTNFLAS 1403
Query: 1264 LSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF 1323
L S G PK LGD++ES GA+F+D G N V+ + L+P+ ++
Sbjct: 1404 SPLAS--GQSEGPRCPKVLGDLVESCLGALFLDCGFNLNHVWTMMLSFLDPVKNLSNLQI 1461
Query: 1324 HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACK 1383
P++EL E CQ + ++ A++ G V ++V NG + +K+ K A +
Sbjct: 1462 SPIKELIELCQSYKWD-REISATKKDGAFTVELKVTKNGCCLTVSATGRNKREGTKKAAQ 1520
Query: 1384 EVLKSLRA 1391
++ +L+A
Sbjct: 1521 LMITNLKA 1528
Score = 421 (153.3 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 145/525 (27%), Positives = 240/525 (45%)
Query: 644 KHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAM 703
K + RG + Y P+ F + P + + H Y I H D + M
Sbjct: 761 KGEGCSRG-DLYEMRVPVLFKQKW---DPSTSCVNLHSYYIMFVPH-PADRIYKKFGFFM 815
Query: 704 RTELESEIKKVNFDLEVERGR-LTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLD 762
++ L E + ++ DL + R ++V + G + +++ L FQ +V+ + +
Sbjct: 816 KSPLPVEAETMDIDLHLAHQRSVSVKIFPSGVTEFDNDEIRLAELFQEIALKVLFERG-E 874
Query: 763 KLNEILDGFELRDNLEID----YLLLP---STGQLI---DWKTVATVLFPRDNGSKHNMN 812
+ + + EL+D+ YLLLP G+ + DW T+ L ++
Sbjct: 875 LIPDFVP-LELQDSSRTSKSTFYLLLPLCLHDGESVISVDWVTIRNCL-SSPIFKTPSVL 932
Query: 813 CSTMFNARIVHTKSGPLC--TCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSV 870
+F H K C + NSLV T ++ Q Y + + H N S
Sbjct: 933 VEDIFPPSGSHLKLANGCWNIDDVKNSLVFTTYSKQFYFVADIC-H-GRNGFSPVKESST 990
Query: 871 TTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKIS---FELPPEL 927
++ + + YG++L +PLL + + HV+N L R Q EP ++ E+PPEL
Sbjct: 991 KSHVESIYKLYGVELKHPAQPLLRVKPLCHVRNLLHN-RMQTNLEPQELDEYFIEIPPEL 1049
Query: 928 CRIIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTIKVLEAITT 987
+ + +S S + +PSIMHR+++ + + +VLEA+TT
Sbjct: 1050 SHLKIKGLSKDIGSSLSLLPSIMHRMENLLVAIELKHVLSASIPEIAEVSGHRVLEALTT 1109
Query: 988 KKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQ 1047
+KC E LE LE LGD+FLK+A S+ LF + + EG L+ ++ +++N+ LC+L ++
Sbjct: 1110 EKCHERLSLERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKK 1169
Query: 1048 KLPGFIRTESFDPKMWIIPG-------DNSGSYE---LNDD-SLF--NGRKIYVT-GRKK 1093
L +IR ++ DP + G D S E LN D + N +I + G
Sbjct: 1170 NLQVYIRDQALDPTQFFAFGHPCRVTCDEVASKEVHSLNRDLGILESNTGEIRCSKGHHW 1229
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQ 1138
+ KT+ADVVEAL+GAFL G + FL IG+ VDF ++ Q
Sbjct: 1230 LYKKTIADVVEALVGAFLVDSGFKGAVKFLKWIGVNVDFESLQVQ 1274
Score = 88 (36.0 bits), Expect = 1.7e-90, Sum P(2) = 1.7e-90
Identities = 21/57 (36%), Positives = 31/57 (54%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI 1243
+RLE LGDA L + ++ +L+ + L G LT RS VNN ++K L +I
Sbjct: 1119 ERLEVLGDAFLKFAVSRHLFLHHDSLDEGELTRRRSNVVNNSNLCRLAIKKNLQVYI 1175
Score = 66 (28.3 bits), Expect = 3.5e-88, Sum P(2) = 3.5e-88
Identities = 31/119 (26%), Positives = 51/119 (42%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y + F + G L+ + ++N AL + L F+ E
Sbjct: 1327 QRLEFLGDAVLDYLMTSYFFTVFPKLKPGQLTDLRSLSVNNEALANVAVSFSLKRFLFCE 1386
Query: 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA-FLSTG 1114
S + + D + L L +G+ G + K + D+VE+ +GA FL G
Sbjct: 1387 SI--YLHEVIEDYTNF--LASSPLASGQS---EGPRC--PKVLGDLVESCLGALFLDCG 1436
Score = 49 (22.3 bits), Expect = 6.6e-73, Sum P(3) = 6.6e-73
Identities = 18/55 (32%), Positives = 27/55 (49%)
Query: 530 SLPCSPLNNHMYGEDFYHVESTGTI-ATLSSSVSLIYFYCSRLPSD-GYFKPTPK 582
++P S + + + DF H + + + T SSSVS S L S G P+PK
Sbjct: 61 TMPYSEIGDDLRSLDFDHADVSSDLHLTSSSSVSSFSSSSSSLFSAAGTDDPSPK 115
Score = 38 (18.4 bits), Expect = 6.6e-33, Sum P(3) = 6.6e-33
Identities = 7/17 (41%), Positives = 11/17 (64%)
Query: 913 QKEPSKISFELPPELCR 929
+K+P KI+ ELC+
Sbjct: 117 EKDPRKIARRYQVELCK 133
Score = 37 (18.1 bits), Expect = 1.2e-71, Sum P(3) = 1.2e-71
Identities = 22/91 (24%), Positives = 38/91 (41%)
Query: 191 IKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL- 249
I SK+ ++D QK + E N K + +L + S A KF +P L
Sbjct: 11 IPSKLLG-KRDREQKNCEEEKNKNKKAKKQQKDPIL---LHTSAATHKF-----LPPPLT 61
Query: 250 --YTHLADELAMIELKHTRSLENLDLNEAQA 278
Y+ + D+L ++ H +L L + +
Sbjct: 62 MPYSEIGDDLRSLDFDHADVSSDLHLTSSSS 92
>MGI|MGI:2177178 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10090
"Mus musculus" [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=IMP] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IMP] [GO:0001932 "regulation of protein phosphorylation"
evidence=IMP] [GO:0001942 "hair follicle development" evidence=IMP]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0004519
"endonuclease activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=ISO;ISA;IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005793 "endoplasmic reticulum-Golgi
intermediate compartment" evidence=ISO] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IMP;IDA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006915 "apoptotic process" evidence=IMP] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0008033 "tRNA
processing" evidence=IEA] [GO:0008152 "metabolic process"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=IMP]
[GO:0008593 "regulation of Notch signaling pathway" evidence=IC]
[GO:0009791 "post-embryonic development" evidence=IMP] [GO:0010070
"zygote asymmetric cell division" evidence=IMP] [GO:0010468
"regulation of gene expression" evidence=IMP] [GO:0010626 "negative
regulation of Schwann cell proliferation" evidence=IMP] [GO:0010628
"positive regulation of gene expression" evidence=IMP] [GO:0014040
"positive regulation of Schwann cell differentiation" evidence=IMP]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0019827
"stem cell maintenance" evidence=IMP] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0021522 "spinal cord motor neuron
differentiation" evidence=IMP] [GO:0021675 "nerve development"
evidence=IMP] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IMP] [GO:0021987 "cerebral cortex
development" evidence=IMP] [GO:0030324 "lung development"
evidence=IMP] [GO:0030326 "embryonic limb morphogenesis"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO;IDA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=ISO] [GO:0030425 "dendrite" evidence=ISO]
[GO:0030426 "growth cone" evidence=ISO] [GO:0031047 "gene silencing
by RNA" evidence=IEA] [GO:0031054 "pre-miRNA processing"
evidence=ISO;IDA] [GO:0031069 "hair follicle morphogenesis"
evidence=IMP] [GO:0031641 "regulation of myelination" evidence=IMP]
[GO:0031643 "positive regulation of myelination" evidence=IMP]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=IMP] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IMP] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP] [GO:0035198 "miRNA binding"
evidence=IDA] [GO:0035264 "multicellular organism growth"
evidence=IMP] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=IMP] [GO:0042981 "regulation of
apoptotic process" evidence=IMP] [GO:0043066 "negative regulation
of apoptotic process" evidence=IMP] [GO:0045069 "regulation of
viral genome replication" evidence=IMP] [GO:0045595 "regulation of
cell differentiation" evidence=IMP] [GO:0045664 "regulation of
neuron differentiation" evidence=IMP] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=IMP] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0048536 "spleen development" evidence=IMP] [GO:0048565
"digestive tract development" evidence=IMP] [GO:0048713 "regulation
of oligodendrocyte differentiation" evidence=IMP] [GO:0048730
"epidermis morphogenesis" evidence=IMP] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IMP] [GO:0048812
"neuron projection morphogenesis" evidence=IMP] [GO:0050767
"regulation of neurogenesis" evidence=IMP] [GO:0051225 "spindle
assembly" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0051726 "regulation of cell cycle" evidence=IMP]
[GO:0055013 "cardiac muscle cell development" evidence=IMP]
[GO:0060119 "inner ear receptor cell development" evidence=IMP]
[GO:0060253 "negative regulation of glial cell proliferation"
evidence=IMP] [GO:0060576 "intestinal epithelial cell development"
evidence=IGI] [GO:0070173 "regulation of enamel mineralization"
evidence=IMP] [GO:0071335 "hair follicle cell proliferation"
evidence=IMP] [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 MGI:MGI:2177178 GO:GO:0005524
GO:GO:0010070 GO:GO:0005737 GO:GO:0006915 GO:GO:0021987
GO:GO:0043066 GO:GO:0045664 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 GO:GO:0001932 GO:GO:0016075 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0019827 GO:GO:0010626
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
HOVERGEN:HBG107811 GO:GO:0071335 GO:GO:0060576 GO:GO:0021889
GO:GO:0032290 GO:GO:0031643 GO:GO:0014040 GO:GO:0070173
GO:GO:0048713 EMBL:AF484523 EMBL:AF484524 EMBL:AB081470
EMBL:AF430845 IPI:IPI00227881 UniGene:Mm.21135 PDB:3C4B PDB:3C4T
PDBsum:3C4B PDBsum:3C4T ProteinModelPortal:Q8R418 SMR:Q8R418
DIP:DIP-29721N IntAct:Q8R418 STRING:Q8R418 PhosphoSite:Q8R418
PaxDb:Q8R418 PRIDE:Q8R418 UCSC:uc007oxi.1 InParanoid:Q8R419
EvolutionaryTrace:Q8R418 CleanEx:MM_DICER1 Genevestigator:Q8R418
GermOnline:ENSMUSG00000041415 GO:GO:0060119 GO:GO:2000630
GO:GO:0008593 Uniprot:Q8R418
Length = 1916
Score = 391 (142.7 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 101/253 (39%), Positives = 139/253 (54%)
Query: 1155 ESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSP 1214
E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY SP
Sbjct: 1664 EKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSP 1723
Query: 1215 GYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGSTF 1270
G LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1724 GVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSEL 1783
Query: 1271 GW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF 1323
E PKA+GDI ESLAGAI++DSG + EVV+Q P+++P+I +
Sbjct: 1784 RRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMQPLIEKFSANV 1843
Query: 1324 --HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVA 1381
PVREL E + + P GK VTVEV G+ F+ + + AK A
Sbjct: 1844 PRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKSAA 1898
Query: 1382 CKEVLKSLRASFP 1394
+ L+SL+A+ P
Sbjct: 1899 ARRALRSLKANQP 1911
Score = 317 (116.6 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 105/304 (34%), Positives = 143/304 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + A+ +R P
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPHA 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y D+ V+ W W +E +KH+VL+MT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SDLEVNASWTKERWSQEFTKHQVLIMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L L+ Y L+ I +L+ DECH A H Y IM +L E+ S PRI G+T
Sbjct: 153 YVALTVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCESCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLERILRSDAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK--VSK-INSTLLYCLSELGVWLA 304
+ L + L M EL+ N D N A R +SK I S L LG W A
Sbjct: 261 TDRSGLYERLLM-ELEAALDFIN-DCNVAVHSKERDSTLISKQILSDCRAVLVVLGPWCA 318
Query: 305 LKAA 308
K A
Sbjct: 319 DKVA 322
Score = 310 (114.2 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 88/276 (31%), Positives = 149/276 (53%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +S+ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATS++EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLMVKSGD-STTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFY--HV---E 549
Y+++ + + + L+ Y A +R + A + ++ + ED + +V +
Sbjct: 560 YVMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSADGAEADVHAGVDDEDAFPPYVLRPD 619
Query: 550 STGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPIQTV 605
G T+++++ I YC+RLPSD + PK +E+ G TLYLP N P++
Sbjct: 620 DGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPLRAS 678
Query: 606 IA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I +++ ++ L C+KLH+IG L ++L+P
Sbjct: 679 IVGPPMDSVRLAERVVALICCEKLHKIGELDEHLMP 714
Score = 183 (69.5 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1390
Score = 103 (41.3 bits), Expect = 1.8e-56, Sum P(4) = 1.8e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1350 KVSNCNLYRLGK-KKGL 1365
Score = 87 (35.7 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 86 (35.3 bits), Expect = 6.1e-81, Sum P(6) = 6.1e-81
Identities = 72/283 (25%), Positives = 115/283 (40%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y L ++K L L + + + I+
Sbjct: 131 ASWTKERWSQEFT--KHQVLI---MTCYVALTVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ +S + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCESCPSCPRILGLTASILNGKCDPEELE--EKIQKLERILRSDAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK-- 284
+ T++ D P + L + L M EL+ N D N A R
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEAALDFIN-DCNVAVHSKERDSTL 297
Query: 285 VSK-INSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQAL 343
+SK I S L LG W A K A + + EQ E + +KF + L
Sbjct: 298 ISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTL 351
Query: 344 VTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 352 LRKIHALCEEYF---SPASLDLKYVTPKVMKLLEILRKYKPYE 391
Score = 71 (30.1 bits), Expect = 3.7e-53, Sum P(4) = 3.7e-53
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1696 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1755
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1756 S--PELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1813
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1814 YMDSGMSLEVVW 1825
Score = 63 (27.2 bits), Expect = 6.7e-105, Sum P(6) = 6.7e-105
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 44 (20.5 bits), Expect = 2.9e-49, Sum P(5) = 2.9e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 37 (18.1 bits), Expect = 1.2e-49, Sum P(4) = 1.2e-49
Identities = 12/47 (25%), Positives = 20/47 (42%)
Query: 1208 KYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL-----HASHE 1249
+YP L G+ + S S + C + + KH HA+H+
Sbjct: 1090 RYPNLDFGWKKSIDSKSFISTCNSSLAESDNYCKHSTTVVPEHAAHQ 1136
>UNIPROTKB|E9PU15 [details] [associations]
symbol:Dicer1 "Protein Dicer1" species:10116 "Rattus
norvegicus" [GO:0000122 "negative regulation of transcription from
RNA polymerase II promoter" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0006915
"apoptotic process" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0009791 "post-embryonic
development" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 RGD:1309381 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 IPI:IPI00365891
Ensembl:ENSRNOT00000014405 Uniprot:E9PU15
Length = 1908
Score = 389 (142.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1654 NFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1713
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1714 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1773
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + EVV+Q P++ P+I +
Sbjct: 1774 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1833
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1834 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1888
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1889 AAARRALRSLKANQP 1903
Score = 312 (114.9 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 92/278 (33%), Positives = 148/278 (53%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +S+ +
Sbjct: 430 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFR 489
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATS++EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 490 KQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 549
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVL-SHASLPCSPLNNHMYGEDFYH 547
Y+++ +KS D T +E L NK K V + A + ++ ++
Sbjct: 550 YVMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSVDGAEADVHAVVDDDDVFPPYVLR 607
Query: 548 VESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPIQ 603
+ G T+++++ I YC+RLPSD + PK +E+ G TLYLP N P++
Sbjct: 608 PDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPLR 666
Query: 604 TVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I G ++ ++ L C+KLH+IG L ++L+P
Sbjct: 667 ASIVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMP 704
Score = 309 (113.8 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 102/304 (33%), Positives = 144/304 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + A+ +R P
Sbjct: 24 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLSPHA 83
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V+ W W +E +KH+VL+MT
Sbjct: 84 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVNASWTKERWSQEFTKHQVLIMTC 142
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L ++ S PRI G+T
Sbjct: 143 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCDSCPS-CPRILGLT 196
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 197 ASILNGKCDPDELE--EKIQKLEKILKSGAETATDLVVLDRY----TSQPCEIVVDCGPF 250
Query: 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK--VSK-INSTLLYCLSELGVWLA 304
+ L + L M EL+ N D N + R +SK I S L LG W A
Sbjct: 251 TDRSGLYERLLM-ELEEALDFIN-DCNVSVHSKERDSTLISKQILSDCRAVLVVLGPWCA 308
Query: 305 LKAA 308
K A
Sbjct: 309 DKVA 312
Score = 187 (70.9 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 42/99 (42%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1287 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1346
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG +Q LP + FDP + W+ PG Y +N D
Sbjct: 1347 YRLGKKQGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1380
Score = 104 (41.7 bits), Expect = 6.0e-56, Sum P(4) = 6.0e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1283 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1339
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1340 KVSNCNLYRLGK-KQGL 1355
Score = 94 (38.1 bits), Expect = 3.5e-82, Sum P(6) = 3.5e-82
Identities = 73/283 (25%), Positives = 116/283 (40%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 121 ASWTKERWSQEFT--KHQVLI---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 175
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ DS + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 176 YREIMKLCDSCPSCPRILGLTASILNGKCDPDELE--EKIQKLEKILKSGAETATDLVVL 233
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK-- 284
+ T++ D P + L + L M EL+ N D N + R
Sbjct: 234 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEEALDFIN-DCNVSVHSKERDSTL 287
Query: 285 VSK-INSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQAL 343
+SK I S L LG W A K A + + EQ E + +KF + L
Sbjct: 288 ISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTL 341
Query: 344 VTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 342 LRKIHALCEEYF---SPASLDLKYVTPKVMKLLEILRKYKPYE 381
Score = 87 (35.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1542 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1578
Score = 71 (30.1 bits), Expect = 1.6e-52, Sum P(4) = 1.6e-52
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1688 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1747
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1748 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1805
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1806 YMDSGMSLEVVW 1817
Score = 63 (27.2 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 957 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1016
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1017 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1051
Score = 44 (20.5 bits), Expect = 1.8e-49, Sum P(5) = 1.8e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 25 EAIHDNIYTPRKYQVELLEAALDHN 49
>UNIPROTKB|F1NJX0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720 GO:GO:0005524
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
SUPFAM:SSF101690 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00818350 EMBL:AADN02003674
Ensembl:ENSGALT00000037569 ArrayExpress:F1NJX0 Uniprot:F1NJX0
Length = 1921
Score = 392 (143.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1847 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1901
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1902 AAARRALRSLKANQP 1916
Score = 320 (117.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 102/305 (33%), Positives = 142/305 (46%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
A++ H+DLKVG+Y + W W +E SKH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCH 153
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
+ L LR Y L+ I +L+ DECH A H Y IM ++ E S PRI G+TA
Sbjct: 154 VALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIM-----KICEDYPS-CPRILGLTA 207
Query: 189 SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFKFYKYDEIP 246
S + K +E + +KI LE ++ S T VL + P Y +
Sbjct: 208 SILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VDCGPYTD-K 263
Query: 247 HALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYCLSELGVWL 303
LY L EL E H + N+ ++ E + LI K++ S + L+ LG W
Sbjct: 264 SGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV----LGPWC 317
Query: 304 ALKAA 308
A K A
Sbjct: 318 ADKVA 322
Score = 303 (111.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 89/278 (32%), Positives = 142/278 (51%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V + P+ ++ ++
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTSETETEPIVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK---EMGICTLYLPNNCPIQ 603
+ T+++++ I YC+RLPSD + PK + TLYLP N P++
Sbjct: 617 RTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLR 676
Query: 604 TVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I + ++ L C+KLH+IG L D+L+P
Sbjct: 677 ASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMP 714
Score = 182 (69.1 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPG 1067
+LG ++ LP + FDP + W+ PG
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 103 (41.3 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 87 (35.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 82 (33.9 bits), Expect = 8.5e-80, Sum P(6) = 8.5e-80
Identities = 55/211 (26%), Positives = 88/211 (41%)
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFK 238
PRI G+TAS + K +E + +KI LE ++ S T VL + P
Sbjct: 200 PRILGLTASILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VD 256
Query: 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYC 295
Y + LY L EL E H + N+ ++ E + LI K++ S + L+
Sbjct: 257 CGPYTD-KSGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV- 312
Query: 296 LSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSI 355
LG W A K A + + EQ E + +KF + + + + E
Sbjct: 313 ---LGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTFLRKIHALCEEHF 363
Query: 356 GDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
S +LD +T K++ L+E L +Y+ E
Sbjct: 364 ---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 72 (30.4 bits), Expect = 7.5e-53, Sum P(4) = 7.5e-53
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1760
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1761 S--PELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1819 YMDSGMSLEMVW 1830
Score = 63 (27.2 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 45 (20.9 bits), Expect = 9.2e-23, Sum P(2) = 9.2e-23
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 2.9e-49, Sum P(5) = 2.9e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 39 (18.8 bits), Expect = 1.8e-61, Sum P(4) = 1.8e-61
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 976 IPTIKVLEAITTKKCQEDFHLESLET 1001
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
>UNIPROTKB|Q25BN1 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0030423 "targeting of mRNA
for destruction involved in RNA interference" evidence=ISS]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=ISS] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 CTD:23405 HOGENOM:HOG000001567 EMBL:AB253768
IPI:IPI00818350 RefSeq:NP_001035555.1 UniGene:Gga.33735
ProteinModelPortal:Q25BN1 SMR:Q25BN1 STRING:Q25BN1 GeneID:423437
KEGG:gga:423437 NextBio:20825910 Uniprot:Q25BN1
Length = 1921
Score = 392 (143.0 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1667 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1726
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1727 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1786
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1787 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1846
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1847 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1901
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1902 AAARRALRSLKANQP 1916
Score = 320 (117.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 102/305 (33%), Positives = 142/305 (46%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
A++ H+DLKVG+Y + W W +E SKH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCH 153
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
+ L LR Y L+ I +L+ DECH A H Y IM ++ E S PRI G+TA
Sbjct: 154 VALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIM-----KICEDYPS-CPRILGLTA 207
Query: 189 SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFKFYKYDEIP 246
S + K +E + +KI LE ++ S T VL + P Y +
Sbjct: 208 SILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VDCGPYTD-K 263
Query: 247 HALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYCLSELGVWL 303
LY L EL E H + N+ ++ E + LI K++ S + L+ LG W
Sbjct: 264 SGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV----LGPWC 317
Query: 304 ALKAA 308
A K A
Sbjct: 318 ADKVA 322
Score = 303 (111.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 89/278 (32%), Positives = 142/278 (51%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V + P+ ++ ++
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTSETETEPIVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK---EMGICTLYLPNNCPIQ 603
+ T+++++ I YC+RLPSD + PK + TLYLP N P++
Sbjct: 617 RTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLR 676
Query: 604 TVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I + ++ L C+KLH+IG L D+L+P
Sbjct: 677 ASIVGPPMSCARLAERVVALICCEKLHKIGELDDHLMP 714
Score = 182 (69.1 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPG 1067
+LG ++ LP + FDP + W+ PG
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1385
Score = 103 (41.3 bits), Expect = 4.5e-56, Sum P(4) = 4.5e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 87 (35.7 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1553 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1589
Score = 82 (33.9 bits), Expect = 8.5e-80, Sum P(6) = 8.5e-80
Identities = 55/211 (26%), Positives = 88/211 (41%)
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFK 238
PRI G+TAS + K +E + +KI LE ++ S T VL + P
Sbjct: 200 PRILGLTASILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VD 256
Query: 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYC 295
Y + LY L EL E H + N+ ++ E + LI K++ S + L+
Sbjct: 257 CGPYTD-KSGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV- 312
Query: 296 LSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSI 355
LG W A K A + + EQ E + +KF + + + + E
Sbjct: 313 ---LGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTFLRKIHALCEEHF 363
Query: 356 GDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
S +LD +T K++ L+E L +Y+ E
Sbjct: 364 ---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 72 (30.4 bits), Expect = 7.5e-53, Sum P(4) = 7.5e-53
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1701 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1760
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1761 S--PELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1818
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1819 YMDSGMSLEMVW 1830
Score = 63 (27.2 bits), Expect = 1.8e-104, Sum P(6) = 1.8e-104
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 45 (20.9 bits), Expect = 9.2e-23, Sum P(2) = 9.2e-23
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 2.9e-49, Sum P(5) = 2.9e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 39 (18.8 bits), Expect = 1.8e-61, Sum P(4) = 1.8e-61
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 976 IPTIKVLEAITTKKCQEDFHLESLET 1001
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
>UNIPROTKB|A0MQH0 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:10029
"Cricetulus griseus" [GO:0016442 "RNA-induced silencing complex"
evidence=ISS] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EF031271 RefSeq:NP_001231198.1
ProteinModelPortal:A0MQH0 SMR:A0MQH0 GeneID:100689239
Uniprot:A0MQH0
Length = 1917
Score = 390 (142.3 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 101/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1663 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1722
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1723 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1782
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + EVV+Q P++ P+I +
Sbjct: 1783 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 1842
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1843 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1897
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1898 AAARRALRSLKANQP 1912
Score = 312 (114.9 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 80/222 (36%), Positives = 114/222 (51%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + A+ +R P
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELAHQIRGDLNPRA 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V+ W W +E +KH+VL+MT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVNASWTKERWSQEFTKHQVLIMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E+ S PRI G+T
Sbjct: 153 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCESCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNF 229
AS + K E + +KI LE ++ S T VL +
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY 246
Score = 308 (113.5 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 88/276 (31%), Positives = 147/276 (53%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +S+ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRSKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATS++EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSVVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLMVKSGD-STTQSRLENYLASG----NKMRKEVL-SHASLPCSPLNNHMYGEDFYHVE 549
Y+++ + + + L+ Y A NK K V + A + ++ ++ +
Sbjct: 560 YVMLADTDKIQSFEEDLKTYKAIEKILRNKCSKSVDGAEADVDAVVDDDDVFPPYVLRPD 619
Query: 550 STGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPIQTV 605
G T+++++ + YC+RLPSD + PK +E+ G TLYLP N P++
Sbjct: 620 DGGPRVTINTAIGHVNRYCARLPSDPFTHLAPKCR-TQELPDGTFYSTLYLPINSPLRAS 678
Query: 606 IA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I G ++ ++ L C+KLH+IG L ++L+P
Sbjct: 679 IVGPPMGCVRLAERVVALICCEKLHKIGELDEHLMP 714
Score = 183 (69.5 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1390
Score = 103 (41.3 bits), Expect = 9.9e-56, Sum P(4) = 9.9e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1349
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1350 KVSNCNLYRLGK-KKGL 1365
Score = 90 (36.7 bits), Expect = 4.9e-81, Sum P(6) = 4.9e-81
Identities = 71/283 (25%), Positives = 117/283 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 131 ASWTKERWSQEFT--KHQVLI---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ +S + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCESCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK-- 284
+ ++ + D P + L + L M EL+ + N D N + R
Sbjct: 244 DRY---ASQPCEIV-VDCGPFTDRSGLYERLLM-ELEEAINFIN-DCNVSVHSKERDSTL 297
Query: 285 VSK-INSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQAL 343
+SK I S L LG W A K A + + EQ E + +KF + L
Sbjct: 298 ISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTL 351
Query: 344 VTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 352 LRKIHALCEEHF---SPASLDLKYVTPKVMKLLEILRKYKPYE 391
Score = 87 (35.7 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1550 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1586
Score = 71 (30.1 bits), Expect = 2.1e-52, Sum P(4) = 2.1e-52
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1697 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1756
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1757 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1814
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1815 YMDSGMSLEVVW 1826
Score = 63 (27.2 bits), Expect = 4.7e-104, Sum P(6) = 4.7e-104
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 45 (20.9 bits), Expect = 6.5e-22, Sum P(2) = 6.5e-22
Identities = 16/73 (21%), Positives = 34/73 (46%)
Query: 217 VYTCASESVLSNFIPFSTA-KFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNE 275
V T ++++N I S A K+ ++KY + H+ D+ +L+ ++ +D
Sbjct: 1726 VLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNE-MQGMDSEL 1784
Query: 276 AQAELIRKKVSKI 288
++E +K I
Sbjct: 1785 RRSEEDEEKEEDI 1797
Score = 44 (20.5 bits), Expect = 3.7e-49, Sum P(5) = 3.7e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 41 (19.5 bits), Expect = 1.2e-74, Sum P(5) = 1.2e-74
Identities = 14/42 (33%), Positives = 18/42 (42%)
Query: 501 KSGDSTTQSRL---ENYLASGNKMRKEVLSHASLPCSPLNNH 539
KS ST S L +NY + E +H +PL NH
Sbjct: 1105 KSFISTCNSSLAENDNYCKHSTIIVPENAAHQGATRTPLENH 1146
Score = 39 (18.8 bits), Expect = 2.7e-21, Sum P(2) = 2.7e-21
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 1239 LHKHILHASHELYKRINITVDS 1260
L K+I H EL+++ + D+
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDT 350
>ZFIN|ZDB-GENE-030131-3445 [details] [associations]
symbol:dicer1 "Dicer1, Dcr-1 homolog (Drosophila)"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0016891 "endoribonuclease
activity, producing 5'-phosphomonoesters" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0004525 "ribonuclease III activity"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=ISS;IMP] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=IMP] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0016442
"RNA-induced silencing complex" evidence=ISS] [GO:0031047 "gene
silencing by RNA" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0004518 "nuclease activity" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0004519 "endonuclease activity" evidence=IEA]
[GO:0070883 "pre-miRNA binding" evidence=IDA] [GO:0021591
"ventricular system development" evidence=IGI;IMP] [GO:0035279
"mRNA cleavage involved in gene silencing by miRNA" evidence=IGI]
[GO:0035195 "gene silencing by miRNA" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00358 SMART:SM00490
SMART:SM00535 SMART:SM00949 InterPro:IPR014720
ZFIN:ZDB-GENE-030131-3445 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0035279 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
GO:GO:0021591 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 HSSP:P66666 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
eggNOG:COG0571 GO:GO:0070883 CTD:23405 HOGENOM:HOG000001567
EMBL:AL772219 EMBL:AY386319 IPI:IPI00933004 RefSeq:NP_001154925.1
UniGene:Dr.78137 STRING:Q6TV19 Ensembl:ENSDART00000045881
Ensembl:ENSDART00000109826 GeneID:324724 KEGG:dre:324724
InParanoid:Q6TV19 OrthoDB:EOG4JDH5W NextBio:20808937
ArrayExpress:Q6TV19 Bgee:Q6TV19 Uniprot:Q6TV19
Length = 1865
Score = 396 (144.5 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 108/287 (37%), Positives = 155/287 (54%)
Query: 1128 IKVDFVNVPYQRQFQVH--AERLVN-----VRHLESLLNYSFRDPSLLVEALTHGSYMLP 1180
++ ++ +P + F+ H AER +N + ES +NY+F++ + L++A TH SY
Sbjct: 1580 LQYGWLKIPPRCMFE-HPDAERTLNHLISGFLNFESKINYTFKNKAYLLQAFTHASYHYN 1638
Query: 1181 EIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLH 1240
I CYQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+ H
Sbjct: 1639 TITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYH 1698
Query: 1241 KHILHASHELYKRIN----ITVDSFEKLSLGSTFGW-------ESVTSFPKALGDIIESL 1289
K+ S EL+ I+ ++ E + S E PKA+GDI ESL
Sbjct: 1699 KYFKAVSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESL 1758
Query: 1290 AGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF--HPVRELTEYCQKNHFSMKKPVASR 1347
AGAI++DSG + E V+Q P++ P+I + PVREL E + + P
Sbjct: 1759 AGAIYMDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLE--MEPETAKFSPAERT 1816
Query: 1348 ISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394
GK VTVEV G+ F+ + + AK A + L+SL+A+ P
Sbjct: 1817 YDGKVRVTVEVVGKGK-FKG--VGRSYRIAKSAAARRALRSLKANQP 1860
Score = 313 (115.2 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 90/275 (32%), Positives = 146/275 (53%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G++ G Q +++ +
Sbjct: 426 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHSIGKNQPRNKQMEVEFR 485
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 486 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPVSN 545
Query: 496 YLLMVKSGDSTT-QSRLENYLASGNKMRKEVLSHAS---LPCSPL--NNHMYGEDFYHVE 549
Y+++ S + T Q L+ Y A +R + A P+ ++++ E
Sbjct: 546 YIMLADSERTKTFQEDLKTYKAIEKILRNKCSKSAECNDFELEPVTDDDNVLPPYVLRSE 605
Query: 550 STGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFH-INKEMG--ICTLYLPNNCPIQTVI 606
G T+++++ + YC+RLPSD + PK + G TL+LP N P++ +
Sbjct: 606 DGGPRVTMNTAIGHVNRYCARLPSDPFTHLAPKCKTVEMNTGGYRSTLFLPINSPLRVPV 665
Query: 607 AQG--NIKTL-KQAACLEACKKLHQIGALTDNLLP 638
N L ++A L C+KLH+IG L D+L+P
Sbjct: 666 TGPVMNCARLAEKAVALLCCEKLHKIGELDDHLMP 700
Score = 298 (110.0 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 93/300 (31%), Positives = 142/300 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXX 71
+E D + R YQ+E LE AL+ NTIV L TGSGKT IA++L++ ++ +R +
Sbjct: 24 QEAIHDNIYTPRKYQVELLEAALEHNTIVCLNTGSGKTFIAVLLIKELSHQIRGENGKRT 83
Query: 72 XXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL 131
++ H+DL+VG Y + + W W EM +++VLVMT I L
Sbjct: 84 VFLVNAASSVAQQASTVRTHSDLQVGDYMSE-DMTSWPEEMWNREMIENQVLVMTCHIFL 142
Query: 132 DGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191
L+ L+ I +L+ DECH A H Y IM ++ E G + PRI G+TAS +
Sbjct: 143 HVLKNGVLPLSKINLLVFDECHLAITGHPYREIM-----KICE-GCPSCPRILGLTASIL 196
Query: 192 KSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAK-FKFYKYDEIPHALY 250
K + + +KI +LE ++ S T VL + + +Y + L
Sbjct: 197 NGKCDPCDLE--EKIQNLEKILQSNAETATDLVVLDRYASQPREEVLDCGQYQD-QSGLS 253
Query: 251 THLADELAMIELKHTRSLENLDLNEAQAE--LIRKKVSKINSTLLYCLSELGVWLALKAA 308
L +EL E + + NL ++ + I K+V +N L+ LG W A KAA
Sbjct: 254 ERLLNELD--EALNFLNDCNLSVHREDRDPTFISKQV--LNDCRAV-LTVLGPWCADKAA 308
Score = 183 (69.5 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1279 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1338
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1339 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1372
Score = 103 (41.3 bits), Expect = 5.8e-55, Sum P(4) = 5.8e-55
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1275 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1331
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1332 KVSNCNLYRLGK-KKGL 1347
Score = 95 (38.5 bits), Expect = 6.3e-83, Sum P(6) = 6.3e-83
Identities = 70/285 (24%), Positives = 122/285 (42%)
Query: 109 DGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMT 166
D +W EEM E++ Q+L+ + F L+++K VL L + + + I
Sbjct: 115 DMTSWPEEMWNREMI--ENQVLV--MTCHIF-LHVLKNGVLPLSKINLLVFDECHLAITG 169
Query: 167 EFYHRLLET--GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASES 224
Y +++ G + PRI G+TAS + K + + +KI +LE ++ S T
Sbjct: 170 HPYREIMKICEGCPSCPRILGLTASILNGKCDPCDLE--EKIQNLEKILQSNAETATDLV 227
Query: 225 VLSNFIPFSTAK-FKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAE--LI 281
VL + + +Y + L L +EL E + + NL ++ + I
Sbjct: 228 VLDRYASQPREEVLDCGQYQD-QSGLSERLLNELD--EALNFLNDCNLSVHREDRDPTFI 284
Query: 282 RKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQ 341
K+V +N L+ LG W A KAA + + EQ E + +KF +
Sbjct: 285 SKQV--LNDCRAV-LTVLGPWCADKAAGIMVRELQKYIKHEQ-----EELNRKFLL-FTD 335
Query: 342 ALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
++ + + E S +LD +T K++ L+E L EY+ E
Sbjct: 336 TILRKIHALCEEHF---SPASLDLKFVTPKVIRLLEILHEYKPFE 377
Score = 87 (35.7 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1530 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1566
Score = 69 (29.3 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1645 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1704
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1705 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1762
Query: 1111 LSTGGENVGLIF 1122
G ++ ++
Sbjct: 1763 YMDSGMSLETVW 1774
Score = 64 (27.6 bits), Expect = 5.5e-104, Sum P(6) = 5.5e-104
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 953 TFAEYYKTKYNLDLSNVNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1012
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1013 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1047
Score = 44 (20.5 bits), Expect = 1.6e-49, Sum P(6) = 1.6e-49
Identities = 17/86 (19%), Positives = 36/86 (41%)
Query: 755 VIMDHNLDK-LNEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNC 813
V++D + E+LD + +D + LL + +++ + R++ ++
Sbjct: 227 VVLDRYASQPREEVLDCGQYQDQSGLSERLLNELDEALNFLNDCNLSVHREDRDPTFISK 286
Query: 814 STMFNARIVHTKSGPLCTCKIHNSLV 839
+ + R V T GP C K +V
Sbjct: 287 QVLNDCRAVLTVLGPWCADKAAGIMV 312
Score = 41 (19.5 bits), Expect = 3.7e-47, Sum P(3) = 3.7e-47
Identities = 8/20 (40%), Positives = 15/20 (75%)
Query: 1343 PVASRISGKAAVTVEVQANG 1362
PV +R SG+ +++E+Q +G
Sbjct: 803 PVYTR-SGEVTISIELQKSG 821
Score = 40 (19.1 bits), Expect = 1.6e-49, Sum P(6) = 1.6e-49
Identities = 6/25 (24%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L ++HN
Sbjct: 25 EAIHDNIYTPRKYQVELLEAALEHN 49
Score = 38 (18.4 bits), Expect = 1.4e-59, Sum P(4) = 1.4e-59
Identities = 13/37 (35%), Positives = 18/37 (48%)
Query: 976 IPTIKVLEAITTKKCQE-----DFHLESLETLGDSFL 1007
+ T K +E I KC + DF LE + T D+ L
Sbjct: 562 LKTYKAIEKILRNKCSKSAECNDFELEPV-TDDDNVL 597
>UNIPROTKB|Q9UPY3 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0001525 "angiogenesis"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0009791 "post-embryonic development" evidence=IEA] [GO:0010070
"zygote asymmetric cell division" evidence=IEA] [GO:0019827 "stem
cell maintenance" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0021889 "olfactory bulb
interneuron differentiation" evidence=IEA] [GO:0021987 "cerebral
cortex development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0035198 "miRNA binding" evidence=IEA] [GO:0035264
"multicellular organism growth" evidence=IEA] [GO:0043066 "negative
regulation of apoptotic process" evidence=IEA] [GO:0045069
"regulation of viral genome replication" evidence=IEA] [GO:0045664
"regulation of neuron differentiation" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0048536 "spleen development"
evidence=IEA] [GO:0048713 "regulation of oligodendrocyte
differentiation" evidence=IEA] [GO:0048754 "branching morphogenesis
of an epithelial tube" evidence=IEA] [GO:0051225 "spindle assembly"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051726 "regulation of cell cycle" evidence=IEA] [GO:0055013
"cardiac muscle cell development" evidence=IEA] [GO:0060119 "inner
ear receptor cell development" evidence=IEA] [GO:0060576
"intestinal epithelial cell development" evidence=IEA] [GO:0070173
"regulation of enamel mineralization" evidence=IEA] [GO:0071335
"hair follicle cell proliferation" evidence=IEA] [GO:2000630
"positive regulation of miRNA metabolic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0031054 "pre-miRNA processing"
evidence=IDA] [GO:0030423 "targeting of mRNA for destruction
involved in RNA interference" evidence=IMP] [GO:0030422 "production
of siRNA involved in RNA interference" evidence=IDA] [GO:0005829
"cytosol" evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0048812 "neuron projection morphogenesis" evidence=ISS]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISS] [GO:0031643 "positive regulation of myelination"
evidence=ISS] [GO:0021675 "nerve development" evidence=ISS]
[GO:0014040 "positive regulation of Schwann cell differentiation"
evidence=ISS] [GO:0000122 "negative regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=ISS] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISS] Reactome:REACT_71 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005829 GO:GO:0005524
GO:GO:0010070 GO:GO:0006915 GO:GO:0021987 GO:GO:0043066
GO:GO:0045664 EMBL:CH471061 GO:GO:0051225 GO:GO:0046872
GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0048812
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0021675 GO:GO:0035198
SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054 GO:GO:0030422
GO:GO:0030423 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0019827 GO:GO:0010626 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 eggNOG:COG1111 KO:K11592
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:23405
HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W EMBL:AB028449 EMBL:HM595745
EMBL:AJ132261 EMBL:AB023145 EMBL:AL356017 EMBL:AL390254
EMBL:BC150287 IPI:IPI00219036 IPI:IPI00977554 RefSeq:NP_001182502.1
RefSeq:NP_001258211.1 RefSeq:NP_085124.2 RefSeq:NP_803187.1
UniGene:Hs.87889 PDB:2EB1 PDBsum:2EB1 ProteinModelPortal:Q9UPY3
SMR:Q9UPY3 DIP:DIP-29664N IntAct:Q9UPY3 MINT:MINT-1957525
STRING:Q9UPY3 PhosphoSite:Q9UPY3 DMDM:257051056 PaxDb:Q9UPY3
PRIDE:Q9UPY3 Ensembl:ENST00000343455 Ensembl:ENST00000393063
Ensembl:ENST00000526495 Ensembl:ENST00000527414
Ensembl:ENST00000541352 GeneID:23405 KEGG:hsa:23405 UCSC:uc001ydv.2
GeneCards:GC14M095552 HGNC:HGNC:17098 HPA:HPA000694 MIM:138800
MIM:601200 MIM:606241 neXtProt:NX_Q9UPY3 Orphanet:276399
Orphanet:99916 Orphanet:284343 PharmGKB:PA38437 HOVERGEN:HBG107811
InParanoid:Q9UPY3 OMA:FLEYDQE PhylomeDB:Q9UPY3 BRENDA:3.1.26.3
ChiTaRS:DICER1 EvolutionaryTrace:Q9UPY3 GenomeRNAi:23405
NextBio:45577 ArrayExpress:Q9UPY3 Bgee:Q9UPY3 CleanEx:HS_DICER1
Genevestigator:Q9UPY3 GermOnline:ENSG00000100697 GO:GO:0071335
GO:GO:0060576 GO:GO:0021889 GO:GO:0032290 GO:GO:0031643
GO:GO:0014040 GO:GO:0070173 GO:GO:0048713 Uniprot:Q9UPY3
Length = 1922
Score = 386 (140.9 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 100/255 (39%), Positives = 138/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1668 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1727
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1728 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1787
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E V+Q P++ P+I +
Sbjct: 1788 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1847
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1848 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1902
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1903 AAARRALRSLKANQP 1917
Score = 311 (114.5 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 88/276 (31%), Positives = 146/276 (52%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI------QCQSR-K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q ++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLMVKSGD-STTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFY--HV---E 549
Y+++ + + + L+ Y A +R + + ++ M +D + +V +
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILRNKCSKSVDTGETDIDPVMDDDDVFPPYVLRPD 619
Query: 550 STGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPIQTV 605
G T+++++ I YC+RLPSD + PK +E+ G TLYLP N P++
Sbjct: 620 DGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPLRAS 678
Query: 606 IA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
I ++ ++ L C+KLH+IG L D+L+P
Sbjct: 679 IVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 308 (113.5 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 102/308 (33%), Positives = 147/308 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFSRNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V+ W W +E +KH+VL+MT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVNASWTKERWNQEFTKHQVLIMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E S PRI G+T
Sbjct: 153 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCENCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLN------EAQAELIRKKV-SKINSTLLYCLSELG 300
+ L + L M EL+ + N D N E + LI K++ S + L+ LG
Sbjct: 261 TDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTLISKQILSDCRAVLVV----LG 314
Query: 301 VWLALKAA 308
W A K A
Sbjct: 315 PWCADKVA 322
Score = 183 (69.5 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1356
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1357 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1390
Score = 104 (41.7 bits), Expect = 1.0e-55, Sum P(4) = 1.0e-55
Identities = 33/87 (37%), Positives = 46/87 (52%)
Query: 1158 LNYSFR----DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
+ YS R +P L+++ALT + +RLE LGD+ L + IT YL+ YP
Sbjct: 1283 IGYSSRTLGPNPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAH 1339
Query: 1214 PGYLTDMRSASVNN-DCYALSSVKHGL 1239
G L+ MRS V+N + Y L K GL
Sbjct: 1340 EGRLSYMRSKKVSNCNLYRLGK-KKGL 1365
Score = 90 (36.7 bits), Expect = 6.8e-81, Sum P(6) = 6.8e-81
Identities = 70/287 (24%), Positives = 119/287 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 131 ASWTKERWNQEFT--KHQVLI---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ ++ + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCENCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN------EAQAEL 280
+ T++ D P + L + L M EL+ + N D N E + L
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTL 297
Query: 281 IRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339
I K++ S + L+ LG W A K A + + EQ E + +KF
Sbjct: 298 ISKQILSDCRAVLVV----LGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-F 347
Query: 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 348 TDTFLRKIHALCEEHF---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 87 (35.7 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1554 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1590
Score = 69 (29.3 bits), Expect = 4.3e-52, Sum P(4) = 4.3e-52
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1702 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1761
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1762 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1819
Query: 1111 LSTGGENVGLIF 1122
G ++ ++
Sbjct: 1820 YMDSGMSLETVW 1831
Score = 63 (27.2 bits), Expect = 1.7e-103, Sum P(6) = 1.7e-103
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 45 (20.9 bits), Expect = 1.7e-21, Sum P(2) = 1.7e-21
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 1.0e-48, Sum P(5) = 1.0e-48
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|F1NP11 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9031 "Gallus
gallus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0000122 "negative
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0001525 "angiogenesis" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006915 "apoptotic
process" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0010070 "zygote asymmetric cell division"
evidence=IEA] [GO:0016442 "RNA-induced silencing complex"
evidence=IEA] [GO:0019827 "stem cell maintenance" evidence=IEA]
[GO:0021522 "spinal cord motor neuron differentiation"
evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0030324 "lung development"
evidence=IEA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IEA] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=IEA] [GO:0031054
"pre-miRNA processing" evidence=IEA] [GO:0031069 "hair follicle
morphogenesis" evidence=IEA] [GO:0031643 "positive regulation of
myelination" evidence=IEA] [GO:0035116 "embryonic hindlimb
morphogenesis" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035264 "multicellular organism growth"
evidence=IEA] [GO:0043066 "negative regulation of apoptotic
process" evidence=IEA] [GO:0045069 "regulation of viral genome
replication" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045944 "positive regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048754 "branching morphogenesis of an epithelial tube"
evidence=IEA] [GO:0051225 "spindle assembly" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0051726
"regulation of cell cycle" evidence=IEA] [GO:0055013 "cardiac
muscle cell development" evidence=IEA] [GO:0060119 "inner ear
receptor cell development" evidence=IEA] [GO:0060576 "intestinal
epithelial cell development" evidence=IEA] [GO:0070173 "regulation
of enamel mineralization" evidence=IEA] [GO:0071335 "hair follicle
cell proliferation" evidence=IEA] [GO:2000630 "positive regulation
of miRNA metabolic process" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0043066 GO:GO:0051225 GO:GO:0045595
Gene3D:3.30.160.20 GO:GO:0045944 GO:GO:0000122 GO:GO:0051726
GO:GO:0003725 GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0045069 GO:GO:0008026
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 OMA:FLEYDQE GO:GO:0071335
GO:GO:0031643 GO:GO:0070173 EMBL:AADN02003674 IPI:IPI00603674
Ensembl:ENSGALT00000017910 ArrayExpress:F1NP11 Uniprot:F1NP11
Length = 1925
Score = 392 (143.0 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 101/255 (39%), Positives = 140/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NYSF++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1671 NFEKKINYSFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1730
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1731 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQMEKNEMQGMDS 1790
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1791 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1850
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1851 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1905
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1906 AAARRALRSLKANQP 1920
Score = 320 (117.7 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 102/305 (33%), Positives = 142/305 (46%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNKNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
A++ H+DLKVG+Y + W W +E SKH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEYSSLEVTESWTKEKWSQEFSKHQVLVMTCH 153
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
+ L LR Y L+ I +L+ DECH A H Y IM ++ E S PRI G+TA
Sbjct: 154 VALTVLRNEYLSLSNINLLVFDECHLAIQDHPYREIM-----KICEDYPS-CPRILGLTA 207
Query: 189 SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFKFYKYDEIP 246
S + K +E + +KI LE ++ S T VL + P Y +
Sbjct: 208 SILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VDCGPYTD-K 263
Query: 247 HALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYCLSELGVWL 303
LY L EL E H + N+ ++ E + LI K++ S + L+ LG W
Sbjct: 264 SGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV----LGPWC 317
Query: 304 ALKAA 308
A K A
Sbjct: 318 ADKVA 322
Score = 290 (107.1 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 89/281 (31%), Positives = 142/281 (50%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V + P+ ++ ++
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTSETETEPIVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK---EMGICTLYLPNNCPIQ 603
+ T+++++ I YC+RLPSD + PK + TLYLP N P++
Sbjct: 617 RTDENSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTRELPDHTFYSTLYLPINSPLR 676
Query: 604 TVIA---QGNIKTLKQAACLEACKKLHQI---GALTDNLLP 638
I + ++ L C+KLH+I G L D+L+P
Sbjct: 677 ASIVGPPMSCARLAERVVALICCEKLHKIEYLGELDDHLMP 717
Score = 182 (69.1 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 38/88 (43%), Positives = 55/88 (62%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1302 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1361
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPG 1067
+LG ++ LP + FDP + W+ PG
Sbjct: 1362 YRLGKKKGLPSRMVVSIFDPPVNWLPPG 1389
Score = 103 (41.3 bits), Expect = 1.0e-54, Sum P(4) = 1.0e-54
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1298 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1354
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1355 KVSNCNLYRLGK-KKGL 1370
Score = 87 (35.7 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1557 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1593
Score = 82 (33.9 bits), Expect = 1.9e-78, Sum P(6) = 1.9e-78
Identities = 55/211 (26%), Positives = 88/211 (41%)
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFK 238
PRI G+TAS + K +E + +KI LE ++ S T VL + P
Sbjct: 200 PRILGLTASILNGKCDPAELE--EKIKKLEKILKSNAETATDLVVLDRYTSQPCEIV-VD 256
Query: 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKV-SKINSTLLYC 295
Y + LY L EL E H + N+ ++ E + LI K++ S + L+
Sbjct: 257 CGPYTD-KSGLYGRLLRELD--EALHFLNDCNISVHSKERDSTLISKQILSDCRAVLVV- 312
Query: 296 LSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSI 355
LG W A K A + + EQ E + +KF + + + + E
Sbjct: 313 ---LGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTFLRKIHALCEEHF 363
Query: 356 GDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
S +LD +T K++ L+E L +Y+ E
Sbjct: 364 ---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 72 (30.4 bits), Expect = 1.7e-51, Sum P(4) = 1.7e-51
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1705 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1764
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1765 S--PELFHVIDDFVQFQMEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1822
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1823 YMDSGMSLEMVW 1834
Score = 63 (27.2 bits), Expect = 4.0e-103, Sum P(6) = 4.0e-103
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 971 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1030
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1031 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1065
Score = 45 (20.9 bits), Expect = 9.2e-23, Sum P(2) = 9.2e-23
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 3.0e-49, Sum P(5) = 3.0e-49
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 39 (18.8 bits), Expect = 1.8e-61, Sum P(4) = 1.8e-61
Identities = 8/26 (30%), Positives = 11/26 (42%)
Query: 976 IPTIKVLEAITTKKCQEDFHLESLET 1001
+ T K +E I KC + ET
Sbjct: 576 LKTYKAIEKILRNKCSKSVDTSETET 601
>UNIPROTKB|E2RIN4 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:2000630 "positive regulation of miRNA
metabolic process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 CTD:23405 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:AAEX03005955 RefSeq:XP_868526.2
Ensembl:ENSCAFT00000028082 GeneID:480426 KEGG:cfa:480426
Uniprot:E2RIN4
Length = 1923
Score = 387 (141.3 bits), Expect = 2.8e-99, Sum P(5) = 2.8e-99
Identities = 100/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1669 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1728
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1729 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1788
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E+V+Q P++ P+I +
Sbjct: 1789 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEMVWQVYYPMMRPLIEKFSA 1848
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1849 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1903
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1904 AAARRALRSLKANQP 1918
Score = 310 (114.2 bits), Expect = 2.8e-99, Sum P(5) = 2.8e-99
Identities = 92/279 (32%), Positives = 145/279 (51%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI------QCQSR-K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q ++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V P+ ++ ++
Sbjct: 560 YIMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTGETDIEPVVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPI 602
+ G T+++++ I YC+RLPSD + PK +E+ G TLYLP N P+
Sbjct: 617 RPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPL 675
Query: 603 QTVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
+ I ++ ++ L C+KLH+IG L D+L+P
Sbjct: 676 RASIVGPPMSCVRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 307 (113.1 bits), Expect = 2.8e-99, Sum P(5) = 2.8e-99
Identities = 102/308 (33%), Positives = 147/308 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V+ W W +E +KH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVNASWTKEKWNQEFTKHQVLVMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E S PRI G+T
Sbjct: 153 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCENCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLN------EAQAELIRKKV-SKINSTLLYCLSELG 300
+ L L ++EL+ + N D N E + LI K++ S + L+ LG
Sbjct: 261 TDRSGLYGRL-LVELEEALNFIN-DCNISVHSKERDSTLISKQILSDCRAVLVV----LG 314
Query: 301 VWLALKAA 308
W A K A
Sbjct: 315 PWCADKVA 322
Score = 183 (69.5 bits), Expect = 2.8e-99, Sum P(5) = 2.8e-99
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1298 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1357
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1358 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1391
Score = 103 (41.3 bits), Expect = 2.1e-55, Sum P(4) = 2.1e-55
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1294 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1350
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1351 KVSNCNLYRLGK-KKGL 1366
Score = 97 (39.2 bits), Expect = 1.1e-68, Sum P(5) = 1.1e-68
Identities = 36/119 (30%), Positives = 59/119 (49%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV---------DFVNVPYQRQFQVH 1144
+ K++AD VEAL+G +L++ GE +FL +G+KV + P + F
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVMKRTDREKTMCPPRENFSSQ 1614
Query: 1145 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLIT 1202
+ L R S+ S R PS+L + L +G +P PRC + + D L++LI+
Sbjct: 1615 QKNLSGGRAAASVA--SLR-PSVLKD-LEYGCLKIP--PRCMFDHPD--ADKTLNHLIS 1665
Score = 87 (35.7 bits), Expect = 2.2e-76, Sum P(5) = 2.2e-76
Identities = 69/287 (24%), Positives = 119/287 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 131 ASWTKEKWNQEFT--KHQVLV---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ ++ + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCENCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN------EAQAEL 280
+ T++ D P + L L ++EL+ + N D N E + L
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYGRL-LVELEEALNFIN-DCNISVHSKERDSTL 297
Query: 281 IRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339
I K++ S + L+ LG W A K A + + EQ E + +KF
Sbjct: 298 ISKQILSDCRAVLVV----LGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-F 347
Query: 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 348 TDTFLRKIHALCEEHF---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 72 (30.4 bits), Expect = 3.5e-52, Sum P(4) = 3.5e-52
Identities = 26/132 (19%), Positives = 60/132 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1762
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1763 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1820
Query: 1111 LSTGGENVGLIF 1122
G ++ +++
Sbjct: 1821 YMDSGMSLEMVW 1832
Score = 63 (27.2 bits), Expect = 2.8e-99, Sum P(5) = 2.8e-99
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 45 (20.9 bits), Expect = 2.2e-21, Sum P(2) = 2.2e-21
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 9.8e-45, Sum P(4) = 9.8e-45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
>UNIPROTKB|F1MCQ5 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 InterPro:IPR014720 GO:GO:0005524 GO:GO:0010070
GO:GO:0006915 GO:GO:0021987 GO:GO:0043066 GO:GO:0045664
GO:GO:0051225 GO:GO:0030324 Gene3D:3.30.160.20 GO:GO:0045944
GO:GO:0001525 GO:GO:0051607 GO:GO:0000122 GO:GO:0051726
GO:GO:0021522 GO:GO:0009791 GO:GO:0048536 GO:GO:0003725
GO:GO:0035264 GO:GO:0035116 GO:GO:0035198 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0019827
GO:GO:0055013 GO:GO:0031069 GO:GO:0048754 GO:GO:0045069
GO:GO:0008026 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
GeneTree:ENSGT00510000046789 IPI:IPI00715122 OMA:FLEYDQE
GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:DAAA02053090
Ensembl:ENSBTAT00000017080 ArrayExpress:F1MCQ5 Uniprot:F1MCQ5
Length = 1920
Score = 386 (140.9 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 100/255 (39%), Positives = 138/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 1666 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 1725
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 1726 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 1785
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E V+Q P++ P+I +
Sbjct: 1786 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 1845
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 1846 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 1900
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 1901 AAARRALRSLKANQP 1915
Score = 308 (113.5 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 103/308 (33%), Positives = 146/308 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V W W +E +KH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVSASWTKEKWNQEFTKHQVLVMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E S PRI G+T
Sbjct: 153 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCENCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLN------EAQAELIRKKV-SKINSTLLYCLSELG 300
+ L + L M EL+ + N D N E + LI K++ S + L+ LG
Sbjct: 261 TDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTLISKQILSDCRAVLVV----LG 314
Query: 301 VWLALKAA 308
W A K A
Sbjct: 315 PWCADKVA 322
Score = 305 (112.4 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 93/279 (33%), Positives = 145/279 (51%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI------QCQSR-K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q ++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V P+ ++ ++
Sbjct: 560 YVMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTGEADTEPVVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPI 602
E G T+++++ + YC+RLPSD + PK +E+ G TLYLP N P+
Sbjct: 617 RPED-GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPL 674
Query: 603 QTVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
+ I I+ ++ L C+KLH+IG L D+L+P
Sbjct: 675 RASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMP 713
Score = 147 (56.8 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 37/99 (37%), Positives = 55/99 (55%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + + HEG LS + + +SN L
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITT--ISSALILHEGRLSYMRSKKVSNCNL 1354
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1355 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1388
Score = 87 (35.7 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 1552 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 1588
Score = 85 (35.0 bits), Expect = 4.9e-76, Sum P(6) = 4.9e-76
Identities = 70/287 (24%), Positives = 118/287 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 131 ASWTKEKWNQEFT--KHQVLV---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ ++ + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCENCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN------EAQAEL 280
+ T++ D P + L + L M EL+ + N D N E + L
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTL 297
Query: 281 IRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339
I K++ S + L+ LG W A K A + EQ E + +KF
Sbjct: 298 ISKQILSDCRAVLVV----LGPWCADKVAGMMVRELQKHIKHEQ-----EELHRKFLL-F 347
Query: 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 348 TDTFLRKIHALCEEHF---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 69 (29.3 bits), Expect = 1.9e-51, Sum P(4) = 1.9e-51
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1700 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1759
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1760 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1817
Query: 1111 LSTGGENVGLIF 1122
G ++ ++
Sbjct: 1818 YMDSGMSLETVW 1829
Score = 65 (27.9 bits), Expect = 4.8e-51, Sum P(4) = 4.8e-51
Identities = 27/77 (35%), Positives = 39/77 (50%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT + L G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTI--SSALILHEGRLSYMRSK 1347
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1348 KVSNCNLYRLGK-KKGL 1363
Score = 63 (27.2 bits), Expect = 3.8e-99, Sum P(6) = 3.8e-99
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 966 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1025
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1026 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1060
Score = 51 (23.0 bits), Expect = 4.1e-22, Sum P(2) = 4.1e-22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L KHI H EL+++ + D+F
Sbjct: 329 LQKHIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 5.0e-45, Sum P(5) = 5.0e-45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 43 (20.2 bits), Expect = 5.5e-60, Sum P(4) = 5.5e-60
Identities = 15/44 (34%), Positives = 25/44 (56%)
Query: 303 LALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTY 346
L L+A T+S SD F E+L+ G++ +K + S AL+ +
Sbjct: 1296 LILQAL-TLS-NASDGFNLERLEMLGDSFLKHAITTISSALILH 1337
Score = 40 (19.1 bits), Expect = 9.3e-97, Sum P(6) = 9.3e-97
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 802 PRDNGSKHNMNCSTMFN 818
P +N + ++NC T+F+
Sbjct: 1142 PLENHDQMSVNCRTLFS 1158
Score = 37 (18.1 bits), Expect = 1.5e-32, Sum P(3) = 1.5e-32
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 119 KHEVLVMTPQILLDGLRLSYFK 140
KH + ++ ++L RLSY +
Sbjct: 1324 KHAITTISSALILHEGRLSYMR 1345
>UNIPROTKB|B3DLA6 [details] [associations]
symbol:dicer1 "Endoribonuclease Dicer" species:8364
"Xenopus (Silurana) tropicalis" [GO:0016442 "RNA-induced silencing
complex" evidence=ISS] [GO:0030422 "production of siRNA involved in
RNA interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
CTD:23405 EMBL:EU338242 EMBL:BC167373 RefSeq:NP_001123390.2
UniGene:Str.39540 STRING:B3DLA6 GeneID:100170154 KEGG:xtr:100170154
Xenbase:XB-GENE-491114 Uniprot:B3DLA6
Length = 1893
Score = 385 (140.6 bits), Expect = 8.3e-97, Sum P(5) = 8.3e-97
Identities = 105/286 (36%), Positives = 150/286 (52%)
Query: 1127 GIKVDFVNVPYQRQFQVHAERLVNVRHL-------ESLLNYSFRDPSLLVEALTHGSYML 1179
GI ++ +P + F+ H + + HL E +NY F++ + L++A TH SY
Sbjct: 1607 GIDYGYLKIPPRCMFE-HPDAEKTLDHLISGFENFEKKINYPFKNKAYLLQAFTHASYHY 1665
Query: 1180 PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGL 1239
I CYQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+
Sbjct: 1666 NTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDY 1725
Query: 1240 HKHILHASHELYKRIN----ITVDSFEKLSLGSTFGW-------ESVTSFPKALGDIIES 1288
HK+ S EL+ I+ ++ E + S E PKA+GDI ES
Sbjct: 1726 HKYFKAISPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFES 1785
Query: 1289 LAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF--HPVRELTEYCQKNHFSMKKPVAS 1346
LAGAI++DSG + E V+ P+++P+I + PVREL E + + P
Sbjct: 1786 LAGAIYMDSGMSLETVWHVYYPMMQPLIEKFSANVPRSPVRELLE--MEPETAKFSPAER 1843
Query: 1347 RISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRAS 1392
GK VTVEV G+ F+ + + AK A + L+SL+A+
Sbjct: 1844 TYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKSAAARRALRSLKAN 1886
Score = 306 (112.8 bits), Expect = 8.3e-97, Sum P(5) = 8.3e-97
Identities = 92/277 (33%), Positives = 146/277 (52%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI-QCQSR------K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q +++ +
Sbjct: 431 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEVEFR 490
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 491 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPSEYRSYVQSKGRARAPISN 550
Query: 496 YLLMVKSGD-STTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGED---F--YHV- 548
Y+++ S + L+ Y A +R + S+ C + +D F Y +
Sbjct: 551 YIMLADSDKIKAFEEDLKTYKAIEKILRNKCSK--SIDCGNTESEPIVDDDEIFPPYVLR 608
Query: 549 ESTGTI-ATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINK-EMGI--CTLYLPNNCPIQT 604
+ G+ T+++++ I YC+RLPSD + PK + G+ TLYLP N P++
Sbjct: 609 QDDGSPRVTINTAIGHINRYCARLPSDPFTHLAPKCKTREFPDGLYRSTLYLPINSPLRA 668
Query: 605 VIAQGNI---KTLKQAACLEACKKLHQIGALTDNLLP 638
I + + +A L CKKLH+IG L D+L+P
Sbjct: 669 PIVGPPMNCGRLADRAVALICCKKLHEIGELDDHLMP 705
Score = 286 (105.7 bits), Expect = 8.3e-97, Sum P(5) = 8.3e-97
Identities = 97/304 (31%), Positives = 135/304 (44%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L +GSGKT IA++L + +Y +R +
Sbjct: 24 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNSGSGKTFIAVLLSKELSYQIRGDFSKNT 83
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQ 128
A++ HTDLKVG+Y W W E H+VLVMT
Sbjct: 84 KRTVFLVNSEKQVSQQVSAVRTHTDLKVGEYSDQEKTQCWAKERWYLEFETHQVLVMTCH 143
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188
I L+ L+ L+ I +L+ DECH A H Y IM ++ E+ PRI G+TA
Sbjct: 144 IFLNVLKSGNVSLSNINLLVFDECHLAIQDHPYREIM-----KICESCQP-CPRILGLTA 197
Query: 189 SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFKFYKYDEIP 246
S + K +D +KI LE ++ S T VL + P Y +
Sbjct: 198 SILNGKCDP--RDLEEKIQKLEEILRSNAETATDLVVLDRYASQPCEIV-LDCGPYID-K 253
Query: 247 HALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKVSKINSTLLYCLSELGVWLA 304
LY L +EL E + N+ + E + LI K++ T+L L G W A
Sbjct: 254 SGLYQRLLNELD--EALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVL---GPWCA 308
Query: 305 LKAA 308
K A
Sbjct: 309 DKVA 312
Score = 187 (70.9 bits), Expect = 8.3e-97, Sum P(5) = 8.3e-97
Identities = 45/118 (38%), Positives = 66/118 (55%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1274 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1333
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPG------DNSGSYELNDDSLFNGRKIYVTGR 1091
+LG ++ P + FDP + W+ PG NS +E N+ S G + V G+
Sbjct: 1334 YRLGKKKGSPSRMVVSIFDPPVNWLPPGYIVNQDKNSDKWESNETS---GEDVMVNGK 1388
Score = 103 (41.3 bits), Expect = 1.0e-52, Sum P(4) = 1.0e-52
Identities = 32/95 (33%), Positives = 48/95 (50%)
Query: 1143 VHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLIT 1202
+H + ++ RH L +P L+++ALT + +RLE LGD+ L + IT
Sbjct: 1252 MHYDSGLSNRHSSKTLG---PNPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAIT 1305
Query: 1203 VYLYNKYPGLSPGYLTDMRSASVNN-DCYALSSVK 1236
YL+ YP G L+ MRS V+N + Y L K
Sbjct: 1306 TYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKK 1340
Score = 93 (37.8 bits), Expect = 5.5e-66, Sum P(5) = 5.5e-66
Identities = 44/157 (28%), Positives = 71/157 (45%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRH 1153
+ K++AD VEAL+G +L++ GE +FL +G+KV +P R+ + NV
Sbjct: 1528 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV----LPEVRKLVTNT----NVIS 1579
Query: 1154 LESLLNYSFRDPSLLV----------EALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLIT 1202
S S RD L + + +G +P PRC ++ + + LD+LI+
Sbjct: 1580 ASSSYQNSTRDNCTLTARTNTDLSSCKGIDYGYLKIP--PRCMFEHPD--AEKTLDHLIS 1635
Query: 1203 VYL-YNK---YPGLSPGYLTD-MRSASVN----NDCY 1230
+ + K YP + YL AS + DCY
Sbjct: 1636 GFENFEKKINYPFKNKAYLLQAFTHASYHYNTITDCY 1672
Score = 78 (32.5 bits), Expect = 3.6e-75, Sum P(5) = 3.6e-75
Identities = 54/210 (25%), Positives = 86/210 (40%)
Query: 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFSTAKFK 238
PRI G+TAS + K +D +KI LE ++ S T VL + P
Sbjct: 190 PRILGLTASILNGKCDP--RDLEEKIQKLEEILRSNAETATDLVVLDRYASQPCEIV-LD 246
Query: 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN--EAQAELIRKKVSKINSTLLYCL 296
Y + LY L +EL E + N+ + E + LI K++ T+L L
Sbjct: 247 CGPYID-KSGLYQRLLNELD--EALNFLIDCNISTHSKERDSTLISKQILSDCQTVLLVL 303
Query: 297 SELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIG 356
G W A K A + + EQ E + +KF + ++ + + E
Sbjct: 304 ---GPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTILRKIHALCEEHF- 353
Query: 357 DDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
S +LD +T K++ L+E L +Y+ E
Sbjct: 354 --SPASLDMKFVTPKVIKLLEILRKYKPYE 381
Score = 68 (29.0 bits), Expect = 4.3e-49, Sum P(4) = 4.3e-49
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1673 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAI 1732
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1733 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1790
Query: 1111 LSTGGENVGLIF 1122
G ++ ++
Sbjct: 1791 YMDSGMSLETVW 1802
Score = 62 (26.9 bits), Expect = 8.3e-97, Sum P(5) = 8.3e-97
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 961 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1020
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I P SL + +PSI++RL
Sbjct: 1021 LQNKQILVPELCAIHPVPASL--WRKAVCLPSILYRL 1055
Score = 44 (20.5 bits), Expect = 7.2e-45, Sum P(4) = 7.2e-45
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 25 EAIHDNIYTPRKYQVELLEAALDHN 49
Score = 39 (18.8 bits), Expect = 1.5e-18, Sum P(2) = 1.5e-18
Identities = 7/22 (31%), Positives = 13/22 (59%)
Query: 1239 LHKHILHASHELYKRINITVDS 1260
L K+I H EL+++ + D+
Sbjct: 319 LQKYIKHEQEELHRKFLLFTDT 340
>UNIPROTKB|Q6TUI4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9913 "Bos
taurus" [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISS] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISS] [GO:0031054
"pre-miRNA processing" evidence=ISS] [GO:0016442 "RNA-induced
silencing complex" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0004525 "ribonuclease III
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0090305 SUPFAM:SSF101690
GO:GO:0016442 GO:GO:0031054 GO:GO:0030422 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
HSSP:P66666 eggNOG:COG1111 KO:K11592 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AY386968 IPI:IPI00715122
RefSeq:NP_976235.1 UniGene:Bt.45343 UniGene:Bt.89150
ProteinModelPortal:Q6TUI4 SMR:Q6TUI4 STRING:Q6TUI4 PRIDE:Q6TUI4
GeneID:337871 KEGG:bta:337871 CTD:23405 HOGENOM:HOG000001567
NextBio:20812451 Uniprot:Q6TUI4
Length = 1923
Score = 391 (142.7 bits), Expect = 8.1e-95, Sum P(5) = 8.1e-95
Identities = 107/282 (37%), Positives = 148/282 (52%)
Query: 1133 VNVPYQRQFQVHAERLVNVRHL-------ESLLNYSFRDPSLLVEALTHGSYMLPEIPRC 1185
+ +P + F H E +RHL E +NY F++ + L++A TH SY I C
Sbjct: 1643 LKIPPRCMFD-HPEADRTLRHLISGFENFEKKINYRFKNKAYLLQAFTHASYHYNTITDC 1701
Query: 1186 YQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILH 1245
YQRLEFLGDA+LDYLIT +LY SPG LTD+RSA VNN +A +VK+ HK+
Sbjct: 1702 YQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKA 1761
Query: 1246 ASHELYKRIN----ITVDSFEKLSLGSTFGW-------ESVTSFPKALGDIIESLAGAIF 1294
S EL+ I+ ++ E + S E PKA+GDI ESLAGAI+
Sbjct: 1762 VSPELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIY 1821
Query: 1295 VDSGCNREVVFQSIRPLLEPMITPETMRF--HPVRELTEYCQKNHFSMKKPVASRISGKA 1352
+DSG + E V+Q P++ P+I + PVREL E + + P GK
Sbjct: 1822 MDSGMSLETVWQVYYPMMRPLIEKFSANVPRSPVRELLE--MEPEITKFSPAERTYDGKV 1879
Query: 1353 AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394
VTVEV G+ F+ + + AK A + L+SL+A+ P
Sbjct: 1880 RVTVEVVGKGK-FKG--VGRSYRIAKSAAARRALRSLKANQP 1918
Score = 307 (113.1 bits), Expect = 8.1e-95, Sum P(5) = 8.1e-95
Identities = 102/308 (33%), Positives = 146/308 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V W W +E +KH+VL+MT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVSASWTKEKWNQEFTKHQVLIMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E S PRI G+T
Sbjct: 153 YVALNVLKNGYLSLSDINLLVFDECHLAILDHPYREIM-----KLCENCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLN------EAQAELIRKKV-SKINSTLLYCLSELG 300
+ L + L M EL+ + N D N E + LI K++ S + L+ LG
Sbjct: 261 TDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTLISKQILSDCRAVLVV----LG 314
Query: 301 VWLALKAA 308
W A K A
Sbjct: 315 PWCADKVA 322
Score = 305 (112.4 bits), Expect = 8.1e-95, Sum P(5) = 8.1e-95
Identities = 93/279 (33%), Positives = 145/279 (51%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI------QCQSR-K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q ++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V P+ ++ ++
Sbjct: 560 YVMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSV-DTGEADTEPVVDDDDVFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPI 602
E G T+++++ + YC+RLPSD + PK +E+ G TLYLP N P+
Sbjct: 617 RPED-GPRVTINTAIGHVNRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPL 674
Query: 603 QTVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
+ I I+ ++ L C+KLH+IG L D+L+P
Sbjct: 675 RASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMP 713
Score = 141 (54.7 bits), Expect = 8.1e-95, Sum P(5) = 8.1e-95
Identities = 36/99 (36%), Positives = 54/99 (54%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQ-QLFKTYQNNHEGLLSVKKERIISNAA 1039
+L+A+T + F+LE LE LGDSFLK+A + L + HEG LS + + +SN
Sbjct: 1297 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRSKKVSNCN 1356
Query: 1040 LCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDD 1078
L +LG ++ LP + FDP + +P Y +N D
Sbjct: 1357 LYRLGKKKGLPSRMVVSIFDPPVNGLPP----GYVVNQD 1391
Score = 89 (36.4 bits), Expect = 6.0e-63, Sum P(5) = 6.0e-63
Identities = 35/119 (29%), Positives = 55/119 (46%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV---------DFVNVPYQRQFQVH 1144
+ K++AD VEAL+G +L++ GE +FL +G+KV + P + F
Sbjct: 1555 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKVLPVIKRTDREKAMCPTRENFTSQ 1614
Query: 1145 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLIT 1202
+ L R S Y S+L + L +G +P PRC + E D L +LI+
Sbjct: 1615 QKNLSGSRAAASGAGYR---ASVLKD-LEYGCLKIP--PRCMFDHPE--ADRTLRHLIS 1665
Score = 86 (35.3 bits), Expect = 7.6e-72, Sum P(5) = 7.6e-72
Identities = 70/287 (24%), Positives = 118/287 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ Y LN++K L L + + + I+
Sbjct: 131 ASWTKEKWNQEFT--KHQVLI---MTCYVALNVLKNGYLSLSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ ++ + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCENCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN------EAQAEL 280
+ T++ D P + L + L M EL+ + N D N E + L
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEEALNFIN-DCNISVHSKERDSTL 297
Query: 281 IRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339
I K++ S + L+ LG W A K A + EQ E + +KF
Sbjct: 298 ISKQILSDCRAVLVV----LGPWCADKVAGMMVRELQKHIKHEQ-----EELHRKFLL-F 347
Query: 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ + + + E S +LD +T K++ L+E L +Y+ E
Sbjct: 348 TDTFLRKIHALCEEHF---SPASLDLKFVTPKVIKLLEILRKYKPYE 391
Score = 69 (29.3 bits), Expect = 2.4e-51, Sum P(4) = 2.4e-51
Identities = 26/132 (19%), Positives = 59/132 (44%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE LGD+ L Y ++ L++ + + G+L+ + +++N L + + +
Sbjct: 1703 QRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAV 1762
Query: 1057 SFDPKMWIIPGDN-SGSYELND----DSLFNGRKIYVTGRKKVK-SKTVADVVEALIGAF 1110
S P+++ + D E N+ DS + + ++ K + D+ E+L GA
Sbjct: 1763 S--PELFHVIDDFVQFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAI 1820
Query: 1111 LSTGGENVGLIF 1122
G ++ ++
Sbjct: 1821 YMDSGMSLETVW 1832
Score = 66 (28.3 bits), Expect = 4.9e-51, Sum P(4) = 4.9e-51
Identities = 28/78 (35%), Positives = 39/78 (50%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLIT-VYLYNKYPGLSPGYLTDMRS 1222
+P L+++ALT + +RLE LGD+ L + IT V L G L+ MRS
Sbjct: 1293 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTVSLSALILDAHEGRLSYMRS 1349
Query: 1223 ASVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1350 KKVSNCNLYRLGK-KKGL 1366
Score = 63 (27.2 bits), Expect = 8.1e-95, Sum P(5) = 8.1e-95
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 966 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1025
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1026 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1060
Score = 51 (23.0 bits), Expect = 5.2e-22, Sum P(2) = 5.2e-22
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L KHI H EL+++ + D+F
Sbjct: 329 LQKHIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 7.9e-41, Sum P(4) = 7.9e-41
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 40 (19.1 bits), Expect = 2.0e-92, Sum P(5) = 2.0e-92
Identities = 6/17 (35%), Positives = 12/17 (70%)
Query: 802 PRDNGSKHNMNCSTMFN 818
P +N + ++NC T+F+
Sbjct: 1142 PLENHDQMSVNCRTLFS 1158
>WB|WBGene00000939 [details] [associations]
symbol:dcr-1 species:6239 "Caenorhabditis elegans"
[GO:0004525 "ribonuclease III activity" evidence=IEA;IMP;IDA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016891
"endoribonuclease activity, producing 5'-phosphomonoesters"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0040010 "positive regulation
of growth rate" evidence=IMP] [GO:0002009 "morphogenesis of an
epithelium" evidence=IMP] [GO:0002119 "nematode larval development"
evidence=IMP] [GO:0018991 "oviposition" evidence=IMP] [GO:0040011
"locomotion" evidence=IMP] [GO:0040035 "hermaphrodite genitalia
development" evidence=IMP] [GO:0016246 "RNA interference"
evidence=IMP] [GO:0006952 "defense response" evidence=IMP]
[GO:0032502 "developmental process" evidence=IMP] [GO:0000003
"reproduction" evidence=IMP] [GO:0010467 "gene expression"
evidence=IMP] [GO:0007126 "meiosis" evidence=IMP] [GO:0045132
"meiotic chromosome segregation" evidence=IMP] [GO:0005829
"cytosol" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IMP] [GO:0040034 "regulation of development,
heterochronic" evidence=IMP] [GO:0031050 "dsRNA fragmentation"
evidence=IDA] [GO:0035262 "gonad morphogenesis" evidence=IMP]
[GO:0004530 "deoxyribonuclease I activity" evidence=IDA]
[GO:0000737 "DNA catabolic process, endonucleolytic" evidence=IDA]
[GO:0006401 "RNA catabolic process" evidence=IDA] [GO:0006309
"apoptotic DNA fragmentation" evidence=IGI] [GO:0031054 "pre-miRNA
processing" evidence=IMP] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 InterPro:IPR011907 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00358 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005829 GO:GO:0005524 GO:GO:0002009
GO:GO:0018991 GO:GO:0040010 GO:GO:0006952 GO:GO:0002119
GO:GO:0046872 GO:GO:0040011 GO:GO:0006401 GO:GO:0040035
GO:GO:0003725 GO:GO:0045132 SUPFAM:SSF101690 GO:GO:0031054
GO:GO:0030422 GO:GO:0040034 GO:GO:0006309 GO:GO:0016075
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:FO081380
GO:GO:0008026 GO:GO:0035262 eggNOG:COG1111 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PIR:S44849 RefSeq:NP_498761.2
DIP:DIP-25340N IntAct:P34529 MINT:MINT-1040079 STRING:P34529
PaxDb:P34529 EnsemblMetazoa:K12H4.8 GeneID:176138
KEGG:cel:CELE_K12H4.8 UCSC:K12H4.8 CTD:42693 WormBase:K12H4.8
GeneTree:ENSGT00510000046789 HOGENOM:HOG000022395 InParanoid:P34529
NextBio:891290 GO:GO:0004530 Uniprot:P34529
Length = 1910
Score = 478 (173.3 bits), Expect = 4.2e-84, Sum P(4) = 4.2e-84
Identities = 167/574 (29%), Positives = 275/574 (47%)
Query: 14 VSADTLPF-ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXX 72
V AD F R+YQ+E L+ A K+NTIV L TGSGKT IA++LL+ Y L P
Sbjct: 4 VRADLQCFNPRDYQVELLDKATKKNTIVQLGTGSGKTFIAVLLLKEYGVQLFAPLDQGGK 63
Query: 73 XXXXXXXXXXXXXEA---IKMHTDLKVGKYWGDMGVDFWDGATWKEE-MSKHEVLVMTPQ 128
+ I++HT KVG+ G WD ++ M +H V+V+T Q
Sbjct: 64 RAFFVVEKVNLVEQQAIHIEVHTSFKVGQVHGQTSSGLWDSKEQCDQFMKRHHVVVITAQ 123
Query: 129 ILLDGLRLSYFKLNMIKVLILDECHHARG-KHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
LLD +R +Y K+ + VLI DECHHA G +H Y IM ++ +LL+ D +PR+ G+T
Sbjct: 124 CLLDLIRHAYLKIEDMCVLIFDECHHALGSQHPYRSIMVDY--KLLKK-DKPVPRVLGLT 180
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNF--IPFSTAKF-KFYKYD- 243
AS IK+KV+ + +++ LE+ M+S + T + LS + P+ K ++
Sbjct: 181 ASLIKAKVAPEK--LMEQLKKLESAMDSVIETASDLVSLSKYGAKPYEVVIICKDFEIGC 238
Query: 244 -EIPHA-LYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGV 301
IP+ + DE T +LDL+ R+ + T +LG
Sbjct: 239 LGIPNFDTVIEIFDETVAFVNTTTEFHPDLDLDP------RRPIKDSLKTTRAVFRQLGP 292
Query: 302 WLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKF 361
W A + A+ +E + + + ++ F + A +++T + E +
Sbjct: 293 WAAWRTAQV---WEKELGKIIKSQVLPDKTLR-FLNMAKTSMIT-IKRLLEPEMKKIKSI 347
Query: 362 NLDSGLLTEKIVCLIESL-----------LEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410
+ ++++ L E L ++ E + IIFV++ + SLL L
Sbjct: 348 EALRPYVPQRVIRLFEILETFNPEFQKERMKLEKAEHLSAIIFVDQ---RYIAYSLL--L 402
Query: 411 LPRHC-TWKTK-------YIAG----NNSGIQCQS-RKKQNEIVEEFRRGLVNVIVATSI 457
+ RH +W+ K Y+ G N + Q K+Q E++ F R +N ++ATS+
Sbjct: 403 MMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQGLHKRQTEVLRRFHRNEINCLIATSV 462
Query: 458 LEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTT-QSRLENYLA 516
LEEG+DV+ CNLVI FD + S++QS+GRAR S Y++ V+ D+ S L+++
Sbjct: 463 LEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRAGSRYVITVEEKDTAACDSDLKDF-- 520
Query: 517 SGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVES 550
++ K +LS +P+ + + + V+S
Sbjct: 521 --QQIEKILLSRHRTVNNPIEDDSDRFEEFDVDS 552
Score = 342 (125.4 bits), Expect = 4.2e-84, Sum P(4) = 4.2e-84
Identities = 97/254 (38%), Positives = 129/254 (50%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
LE + Y F++ + LV+A TH SY+ + CYQRLEFLGDAVLDY+IT YL+ S
Sbjct: 1646 LEEKIGYRFKERAYLVQAFTHASYINNRVTGCYQRLEFLGDAVLDYMITRYLFEDSRQYS 1705
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTF--- 1270
PG LTD+RSA VNN +A +VK KH + LY I V + + + F
Sbjct: 1706 PGVLTDLRSALVNNTIFASLAVKFEFQKHFIAMCPGLYHMIEKFVKLCSERNFDTNFNAE 1765
Query: 1271 ------------GWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITP 1318
G E PKA+GDI ES+AGAI++DSG N + +Q I ++ I
Sbjct: 1766 MYMVTTEEEIDEGQEEDIEVPKAMGDIFESVAGAIYLDSGRNLDTTWQVIFHMMRGTI-- 1823
Query: 1319 ETMRFHPVRE-LTEYCQKNHFSMKKPVASRI--SGKAAVTVEVQANGRLFEHTFLDADKK 1375
E +P R + E + ++ RI SGK VTVEV N R T + + +
Sbjct: 1824 ELCCANPPRSPIRELMEFEQSKVRFSKMERILESGKVRVTVEVVNNMRF---TGMGRNYR 1880
Query: 1376 TAKKVACKEVLKSL 1389
AK A K LK L
Sbjct: 1881 IAKATAAKRALKYL 1894
Score = 335 (123.0 bits), Expect = 1.5e-68, Sum P(4) = 1.5e-68
Identities = 102/286 (35%), Positives = 152/286 (53%)
Query: 386 EDIRCIIFVERVITAIVLQSLLSELLPRHC-TWKTK-------YIAG----NNSGIQCQS 433
E + IIFV++ + SLL L+ RH +W+ K Y+ G N + Q
Sbjct: 383 EHLSAIIFVDQ---RYIAYSLL--LMMRHIKSWEPKFKFVNPDYVVGASGRNLASSDSQG 437
Query: 434 -RKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492
K+Q E++ F R +N ++ATS+LEEG+DV+ CNLVI FD + S++QS+GRAR
Sbjct: 438 LHKRQTEVLRRFHRNEINCLIATSVLEEGVDVKQCNLVIKFDRPLDMRSYVQSKGRARRA 497
Query: 493 NSDYLLMVKSGDSTT-QSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYG-EDF----- 545
S Y++ V+ D+ S L+++ ++ K +LS +P+ + E+F
Sbjct: 498 GSRYVITVEEKDTAACDSDLKDF----QQIEKILLSRHRTVNNPIEDDSDRFEEFDVDSQ 553
Query: 546 ---YHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHIN--KEMGI---CT-LYL 596
Y VE TG +S++++LI YCS+LPSD + + P I +E G+ C L L
Sbjct: 554 MEPYVVEKTGATLKMSTAIALINRYCSKLPSDIFTRLVPHNQIIPIEENGVTKYCAELLL 613
Query: 597 PNNCPIQTVIA----QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
P N PI+ I N KT + A LEAC++LH G L DNLLP
Sbjct: 614 PINSPIKHAIVLKNPMPNKKTAQMAVALEACRQLHLEGELDDNLLP 659
Score = 154 (59.3 bits), Expect = 4.2e-84, Sum P(4) = 4.2e-84
Identities = 33/87 (37%), Positives = 48/87 (55%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L A+TT + LE ET+GDSFLK+A + L+ T + HEG LS + + +SN L
Sbjct: 1397 LLTALTTSNAADGMSLERFETIGDSFLKFATTDYLYHTLLDQHEGKLSFARSKEVSNCNL 1456
Query: 1041 CKLGCEQKLPGFIRTESFDPK-MWIIP 1066
+LG + +P I FD W+ P
Sbjct: 1457 YRLGKKLGIPQLIVANKFDAHDSWLPP 1483
Score = 77 (32.2 bits), Expect = 4.2e-84, Sum P(4) = 4.2e-84
Identities = 17/40 (42%), Positives = 26/40 (65%)
Query: 1091 RKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
++ + K++AD VEALIG L T G N L ++ +G+KV
Sbjct: 1565 QQHISDKSIADAVEALIGVHLLTLGPNPTLKVMNWMGLKV 1604
Score = 75 (31.5 bits), Expect = 7.9e-43, Sum P(2) = 7.9e-43
Identities = 29/95 (30%), Positives = 45/95 (47%)
Query: 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 1210
V H++S + P LL+ ALT + +R E +GD+ L + T YLY+
Sbjct: 1381 VSHIDSDIGLGV-SPCLLLTALTTSN---AADGMSLERFETIGDSFLKFATTDYLYHTLL 1436
Query: 1211 GLSPGYLTDMRSASVNN-DCYALSSVKHGLHKHIL 1244
G L+ RS V+N + Y L K G+ + I+
Sbjct: 1437 DQHEGKLSFARSKEVSNCNLYRLGK-KLGIPQLIV 1470
Score = 75 (31.5 bits), Expect = 7.9e-43, Sum P(2) = 7.9e-43
Identities = 31/133 (23%), Positives = 58/133 (43%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPG-FIRT 1055
+ LE LGD+ L Y ++ LF+ + G+L+ + +++N L + + FI
Sbjct: 1679 QRLEFLGDAVLDYMITRYLFEDSRQYSPGVLTDLRSALVNNTIFASLAVKFEFQKHFI-- 1736
Query: 1056 ESFDPKMW-IIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKS---------KTVADVVEA 1105
+ P ++ +I E N D+ FN VT +++ K + D+ E+
Sbjct: 1737 -AMCPGLYHMIEKFVKLCSERNFDTNFNAEMYMVTTEEEIDEGQEEDIEVPKAMGDIFES 1795
Query: 1106 LIGAFLSTGGENV 1118
+ GA G N+
Sbjct: 1796 VAGAIYLDSGRNL 1808
Score = 39 (18.8 bits), Expect = 4.8e-39, Sum P(2) = 4.8e-39
Identities = 9/18 (50%), Positives = 13/18 (72%)
Query: 1276 TSFPKALGDIIESLA-GA 1292
T+FPK + + IE L+ GA
Sbjct: 1307 TNFPKTIDEEIEELSIGA 1324
Score = 38 (18.4 bits), Expect = 6.1e-39, Sum P(2) = 6.1e-39
Identities = 9/20 (45%), Positives = 10/20 (50%)
Query: 610 NIKTLKQAACLEACKKLHQI 629
N + K A A K LHQI
Sbjct: 1878 NYRIAKATAAKRALKYLHQI 1897
>POMBASE|SPCC188.13c [details] [associations]
symbol:dcr1 "dicer" species:4896 "Schizosaccharomyces
pombe" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0004540 "ribonuclease activity" evidence=IDA] [GO:0005524 "ATP
binding" evidence=IC] [GO:0005720 "nuclear heterochromatin"
evidence=IC] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006396 "RNA processing" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0031048 "chromatin silencing by small RNA"
evidence=TAS] [GO:0034613 "cellular protein localization"
evidence=IMP] [GO:0035389 "establishment of chromatin silencing at
silent mating-type cassette" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051570 "regulation of histone H3-K9
methylation" evidence=IMP] [GO:0051983 "regulation of chromosome
segregation" evidence=IMP] [GO:0090052 "regulation of chromatin
silencing at centromere" evidence=IMP] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR006935
Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 Pfam:PF04851 PROSITE:PS00517
PROSITE:PS50142 PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490
SMART:SM00535 PomBase:SPCC188.13c GO:GO:0005829 GO:GO:0005524
GO:GO:0007059 GO:GO:0034613 EMBL:CU329672 GenomeReviews:CU329672_GR
GO:GO:0046872 GO:GO:0003677 GO:GO:0005720 GO:GO:0003723
GO:GO:0007049 GO:GO:0004386 GO:GO:0031048 GO:GO:0090052
GO:GO:0051570 GO:GO:0030422 GO:GO:0004540 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0051983 eggNOG:COG1111
KO:K11592 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PIR:T39130 RefSeq:NP_588215.2 PDB:2L6M PDBsum:2L6M
ProteinModelPortal:Q09884 STRING:Q09884 EnsemblFungi:SPCC188.13c.1
GeneID:2538930 KEGG:spo:SPCC188.13c OMA:RMCLICN OrthoDB:EOG4PRWZS
NextBio:20800107 GO:GO:0035389 Uniprot:Q09884
Length = 1374
Score = 375 (137.1 bits), Expect = 6.5e-79, Sum P(3) = 6.5e-79
Identities = 119/395 (30%), Positives = 193/395 (48%)
Query: 930 IIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTIKVLEAITTKK 989
+ + P+S S +PSI++ +++ +H + I T +A+T+ +
Sbjct: 869 LYILPVSRHLKNSALLIPSILYHIENLLVASSFI----EHFRLDCKIDT--ACQALTSAE 922
Query: 990 CQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKL 1049
Q +F + LE GD FLK AS +F + + E L +++IISN L K+ + +L
Sbjct: 923 SQLNFDYDRLEFYGDCFLKLGASITVFLKFPDTQEYQLHFNRKKIISNCNLYKVAIDCEL 982
Query: 1050 PGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGA 1109
P + + + + W P G + D K +K+ K +AD+VEA IGA
Sbjct: 983 PKYALSTPLEIRHWC-P---YGFQKSTSD------KCRYAVLQKLSVKRIADMVEASIGA 1032
Query: 1110 FLSTGGENVGLIFLDRIGIKV-DFVNVP-YQRQFQV--HAERLVNVR-----HLESLLNY 1160
L G + L + + + D N + F + +A+ L NV+ ++E + Y
Sbjct: 1033 CLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFDLNTYADSLRNVQFPYSSYIEETIGY 1092
Query: 1161 SFRDPSLLVEALTHGSYMLPE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTD 1219
SF++ LL A H S M + I YQ+LEFLGDAVLDY+I YLY KYP + G LTD
Sbjct: 1093 SFKNKKLLHLAFIHPSMMSQQGIYENYQQLEFLGDAVLDYIIVQYLYKKYPNATSGELTD 1152
Query: 1220 MRSASVNNDCYALSSVKHGLHKHILHASHELYKRI---NITVDSFEKLSLGSTFGWESVT 1276
+S V N + LHK+I H S + I +++F + + + + W +
Sbjct: 1153 YKSFYVCNKSLSYIGFVLNLHKYIQHESAAMCDAIFEYQELIEAFRETASENPWFWFEID 1212
Query: 1277 SFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPL 1311
S PK + D +E++ AIF+DSG + + + Q + PL
Sbjct: 1213 S-PKFISDTLEAMICAIFLDSGFSLQSL-QFVLPL 1245
Score = 310 (114.2 bits), Expect = 6.5e-79, Sum P(3) = 6.5e-79
Identities = 108/374 (28%), Positives = 174/374 (46%)
Query: 283 KKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQA 342
K +S+ T L ++G+W E + Y DF ++L + + K+ D A
Sbjct: 257 KLISRAVKTALAETIDMGLWFG----EQVWLYLVDFVETKRLKK--KALGKQLSDDEELA 310
Query: 343 ---LVTYVPSGAEWSIGDDS-KFNL-DSGLLTEKIVCLIESL-LEYRGVEDIRCIIFVER 396
L +V D+ + + DS +T+K+ L+E L YR + +R +IFVER
Sbjct: 311 IDRLKIFVEDWKNNKYSDNGPRIPVFDSTDVTDKVFKLLELLKATYRKSDSVRTVIFVER 370
Query: 397 VITAIVLQSLLSEL-LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVAT 455
TA L + L LP ++ G + ++Q + + +F+ G NV++AT
Sbjct: 371 KATAFTLSLFMKTLNLPNIRAHSFIGHGPSDQGEFSMTFRRQKDTLHKFKTGKYNVLIAT 430
Query: 456 SILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYL 515
++ EEG+DV SCNLVI F+ RTV ++QSRGRAR S +L+ + + + R+ +
Sbjct: 431 AVAEEGIDVPSCNLVIRFNICRTVTQYVQSRGRARAMASKFLIFLNTEELLIHERILHE- 489
Query: 516 ASGNKMRKEVLSHA----SLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRL 571
K LS++ SL C + + Y V TG + T +VSL+Y +C+ L
Sbjct: 490 EKNLKFALSELSNSNIFDSLVCEE-RERVTDDIVYEVGETGALLTGLYAVSLLYNFCNTL 548
Query: 572 PSDGYFKPTPKFHINKEMG--IC-TLYLPNNCPIQTVIAQGN----IKTLKQAACLEACK 624
D Y + P F + C + LP C + AQG+ I+ KQ A C
Sbjct: 549 SRDVYTRYYPTFTAQPCLSGWYCFEVELPKACKVPA--AQGSPAKSIRKAKQNAAFIMCL 606
Query: 625 KLHQIGALTDNLLP 638
L ++G + +L P
Sbjct: 607 DLIRMGLIDKHLKP 620
Score = 263 (97.6 bits), Expect = 6.5e-79, Sum P(3) = 6.5e-79
Identities = 69/238 (28%), Positives = 118/238 (49%)
Query: 13 EVSADTLP-FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYA---YLLRKPS- 67
++S+ LP R YQ + A KQNT++ + TG+GKTL+A+ L++ L+++ +
Sbjct: 2 DISSFLLPQLLRKYQQDVYNIASKQNTLLVMRTGAGKTLLAVKLIKQKLEEQILIQESNL 61
Query: 68 --PXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVM 125
E I+ KVG ++G++ ++ + + K+ V+V+
Sbjct: 62 EHKKISVFLVNKVPLVFQQAEYIRSQLPAKVGMFYGELSIEMSEQLL-TNIILKYNVIVI 120
Query: 126 TPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR---LLETGDSNLPR 182
T + L + +N + ++I DECHHA G YA IM +FYHR +L LPR
Sbjct: 121 TADLFYLFLARGFLSINDLNLIIFDECHHAIGNDAYARIMNDFYHRAKAVLSKKHFTLPR 180
Query: 183 IFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFY 240
IFGMTASP K + + + +++ E L +SK + SE+ L+++ + Y
Sbjct: 181 IFGMTASPFTGK----KGNLYHRLYQWEQLFDSKAHV-VSENELADYFCLPEESYVMY 233
Score = 49 (22.3 bits), Expect = 1.7e-17, Sum P(2) = 1.7e-17
Identities = 25/128 (19%), Positives = 60/128 (46%)
Query: 281 IRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDAS 340
+++ + +++ CL + G+ ALK +++S D W++ + + + + +
Sbjct: 1019 VKRIADMVEASIGACLLDSGLDSALKICKSLSVGLLDISNWDEWNNYFD--LNTYADSLR 1076
Query: 341 QALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGV-EDIRCIIFV-ERVI 398
Y S E +IG K + LL + + S++ +G+ E+ + + F+ + V+
Sbjct: 1077 NVQFPY-SSYIEETIGYSFK---NKKLL--HLAFIHPSMMSQQGIYENYQQLEFLGDAVL 1130
Query: 399 TAIVLQSL 406
I++Q L
Sbjct: 1131 DYIIVQYL 1138
Score = 41 (19.5 bits), Expect = 1.2e-28, Sum P(2) = 1.2e-28
Identities = 11/36 (30%), Positives = 17/36 (47%)
Query: 201 DYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAK 236
D+ +KI DLETL ++ ++P S K
Sbjct: 622 DFRRKIADLETLEEDELKDEGYIETYERYVPKSWMK 657
>FB|FBgn0034246 [details] [associations]
symbol:Dcr-2 "Dicer-2" species:7227 "Drosophila melanogaster"
[GO:0004386 "helicase activity" evidence=ISS;NAS] [GO:0003725
"double-stranded RNA binding" evidence=IEA;ISS;NAS] [GO:0016246
"RNA interference" evidence=IMP;NAS;IDA;TAS] [GO:0030422
"production of siRNA involved in RNA interference"
evidence=IMP;IDA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0035087 "siRNA
loading onto RISC involved in RNA interference" evidence=IMP]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0006342 "chromatin
silencing" evidence=IMP] [GO:0051607 "defense response to virus"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0006379 "mRNA cleavage" evidence=IMP] [GO:0009597 "detection of
virus" evidence=IMP] [GO:0016442 "RNA-induced silencing complex"
evidence=IDA] [GO:0070868 "heterochromatin organization involved in
chromatin silencing" evidence=IMP] [GO:0007626 "locomotory
behavior" evidence=IMP] [GO:0035197 "siRNA binding" evidence=IDA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0016887
"ATPase activity" evidence=IDA] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR001650 InterPro:IPR003100
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 Pfam:PF00636 Pfam:PF02170 Pfam:PF03368 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE013599 GO:GO:0005524 GO:GO:0005634 GO:GO:0005737
GO:GO:0007626 GO:GO:0016887 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 GO:GO:0035197 GO:GO:0016442 GO:GO:0033227
GO:GO:0070868 GO:GO:0030422 GO:GO:0035087 GO:GO:0030423
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0006379 eggNOG:COG1111 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 GeneTree:ENSGT00510000046789 GO:GO:0009597
EMBL:BT128787 RefSeq:NP_523778.2 UniGene:Dm.7764 SMR:A1ZAW0
DIP:DIP-54444N IntAct:A1ZAW0 STRING:A1ZAW0
EnsemblMetazoa:FBtr0086904 GeneID:36993 KEGG:dme:Dmel_CG6493
UCSC:CG6493-RA CTD:36993 FlyBase:FBgn0034246 InParanoid:A1ZAW0
OrthoDB:EOG4DJHB9 GenomeRNAi:36993 NextBio:801402 Uniprot:A1ZAW0
Length = 1722
Score = 307 (113.1 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 104/408 (25%), Positives = 180/408 (44%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R YQL +++ K N IV+L TGSGKT +AI++L+ ++ KP
Sbjct: 9 RGYQLRLVDHLTKSNGIVYLPTGSGKTFVAILVLKRFSQDFDKPIESGGKRALFMCNTVE 68
Query: 83 XXXE---AIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
+ A++ T+ KVG Y G+ GVD W W +E+ K++VLV T Q+ LD + +Y
Sbjct: 69 LARQQAMAVRRCTNFKVGFYVGEQGVDDWTRGMWSDEIKKNQVLVGTAQVFLDMVTQTYV 128
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
L+ + V+I+DECHH G H + EF + LPR+ G+T IK ++
Sbjct: 129 ALSSLSVVIIDECHHGTGHHPFR----EFMRLFTIANQTKLPRVVGLTGVLIKGNEITNV 184
Query: 200 QDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259
K+ +LE + T + + N + ++T + PH L
Sbjct: 185 AT---KLKELEITYRGNIITVSDTKEMENVMLYATKPTEVMV--SFPHQEQVLTVTRLIS 239
Query: 260 IEL-KHTRSLENLDLN------EAQAELIR---KK--VSKINSTLLYCLSELGVWLALKA 307
E+ K SL+ +++ + +R KK V ++ + LY + E G++ A A
Sbjct: 240 AEIEKFYVSLDLMNIGVQPIRRSKSLQCLRDPSKKSFVKQLFNDFLYQMKEYGIYAASIA 299
Query: 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS-- 365
++ E D Q + ++ + + + + + DD N+++
Sbjct: 300 IISL-IVEFDIKR-RQAETLSVKLMHRTALTLCEKIRHLLVQKLQDMTYDDDDDNVNTEE 357
Query: 366 ---GLLTEKIVCLIESL-LEY--RGVEDIRCIIFVERVITAIVLQSLL 407
T K+ + SL + + + +DI C++FVER T + LL
Sbjct: 358 VIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLL 405
Score = 241 (89.9 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 67/202 (33%), Positives = 103/202 (50%)
Query: 1069 NSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGI 1128
N S+ D F+ + G + +K +AD +EAL+G + G L+ I
Sbjct: 1338 NGQSFYAGAD--FSSEVNFCVGLVTIPNKVIADTLEALLGVIVKNYGLQHAFKMLEYFKI 1395
Query: 1129 -KVDF-------VNVPY---QRQFQVHAER----LVNVRHLESLLNYSFRDPSLLVEALT 1173
+ D +N+ + + V+ L+N +LE L Y+F+D L++ALT
Sbjct: 1396 CRADIDKPLTQLLNLELGGKKMRANVNTTEIDGFLINHYYLEKNLGYTFKDRRYLLQALT 1455
Query: 1174 HGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALS 1233
H SY I YQ LEF+GDA+LD+LI+ Y++ ++PG LTD+RSA VNN A
Sbjct: 1456 HPSYPTNRITGSYQELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACI 1515
Query: 1234 SVKHGLHKHILHASHELYKRIN 1255
V+H LH IL + +L + I+
Sbjct: 1516 CVRHRLHFFILAENAKLSEIIS 1537
Score = 241 (89.9 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 68/252 (26%), Positives = 125/252 (49%)
Query: 357 DDSKFNLDSGLL---TEKIVCLIESL-LEY--RGVEDIRCIIFVERVITAIVLQSLLSEL 410
DD N + ++ T K+ + SL + + + +DI C++FVER T + LL
Sbjct: 349 DDDNVNTEEVIMNFSTPKVQRFLMSLKVSFADKDPKDICCLVFVERRYTCKCIYGLLLNY 408
Query: 411 L---PRHCTWKT-KYIAG-NNSGIQCQS---RKKQNEIVEEFRRGLVNVIVATSILEEGL 462
+ P T +++ G NN +S RK Q +++FR G N+++ +S+LEEG+
Sbjct: 409 IQSTPELRNVLTPQFMVGRNNISPDFESVLERKWQKSAIQQFRDGNANLMICSSVLEEGI 468
Query: 463 DVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMV--KSGDSTTQSRLENYLASGNK 520
DVQ+CN V + DP +T ++QS+GRAR + ++L K + T Q ++ Y + N
Sbjct: 469 DVQACNHVFILDPVKTFNMYVQSKGRARTTEAKFVLFTADKEREKTIQ-QIYQYRKAHND 527
Query: 521 ----MRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGY 576
++ VL + H + G + ++++++++ YC +P+D +
Sbjct: 528 IAEYLKDRVLEKTEPELYEIKGHFQDDIDPFTNENGAVLLPNNALAILHRYCQTIPTDAF 587
Query: 577 FKPTPKFHINKE 588
P FH+ +E
Sbjct: 588 GFVIPWFHVLQE 599
Score = 136 (52.9 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 32/87 (36%), Positives = 47/87 (54%)
Query: 982 LEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALC 1041
L AIT + F +E LE LGDSFLK +A+ L Y + +EG L+ K +++SN L
Sbjct: 1195 LAAITASSAADVFDMERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSNRNLL 1254
Query: 1042 KLGCEQKLPGFIRTESFDPKM-WIIPG 1067
+ +P + T F P+ W+ PG
Sbjct: 1255 FCLIDADIPKTLNTIQFTPRYTWLPPG 1281
Score = 115 (45.5 bits), Expect = 7.9e-63, Sum P(6) = 7.9e-63
Identities = 30/140 (21%), Positives = 63/140 (45%)
Query: 521 MRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPT 580
++ VL + H + G + ++++++++ YC +P+D +
Sbjct: 532 LKDRVLEKTEPELYEIKGHFQDDIDPFTNENGAVLLPNNALAILHRYCQTIPTDAFGFVI 591
Query: 581 PKFHINKE------MGIC-------TLYLPNNCPIQTVI---AQGNIKTLKQAACLEACK 624
P FH+ +E G+ ++ +P NC ++ I N+KT K +A +ACK
Sbjct: 592 PWFHVLQEDERDRIFGVSAKGKHVISINMPVNCMLRDTIYSDPMDNVKTAKISAAFKACK 651
Query: 625 KLHQIGALTDNLLPDIVVEK 644
L+ +G L + +P + E+
Sbjct: 652 VLYSLGELNERFVPKTLKER 671
Score = 95 (38.5 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 36/127 (28%), Positives = 58/127 (45%)
Query: 1270 FGWESVTSFPKALGDIIESLAGAIFVDSGC-NREVVFQSIRPLLEPMITPETMRFHPVRE 1328
F + PKALGD++E+L A+++D C + + ++ I L EP + T + P+
Sbjct: 1600 FNMSTNVDVPKALGDVLEALIAAVYLD--CRDLQRTWEVIFNLFEPELQEFTRKV-PINH 1656
Query: 1329 LTEYCQKNHFSMKKPVASR--ISGKAAVTVEVQANGRLFEHTF----LDADKKTAKKVAC 1382
+ + + H KPV S + G+ TV V E T ++K AK A
Sbjct: 1657 IRQLVEHKH---AKPVFSSPIVEGE---TVMVSCQFTCMEKTIKVYGFGSNKDQAKLSAA 1710
Query: 1383 KEVLKSL 1389
K L+ L
Sbjct: 1711 KHALQQL 1717
Score = 85 (35.0 bits), Expect = 1.9e-50, Sum P(5) = 1.9e-50
Identities = 18/41 (43%), Positives = 27/41 (65%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNN 1227
+RLE LGD+ L T+YL +KY + G LT+++S V+N
Sbjct: 1210 ERLEILGDSFLKLSATLYLASKYSDWNEGTLTEVKSKLVSN 1250
Score = 66 (28.3 bits), Expect = 1.7e-48, Sum P(5) = 1.7e-48
Identities = 15/61 (24%), Positives = 30/61 (49%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056
+ LE +GD+ L + S +F+ + G L+ + +++N L + +L FI E
Sbjct: 1469 QELEFIGDAILDFLISAYIFENNTKMNPGALTDLRSALVNNTTLACICVRHRLHFFILAE 1528
Query: 1057 S 1057
+
Sbjct: 1529 N 1529
Score = 53 (23.7 bits), Expect = 6.6e-76, Sum P(6) = 6.6e-76
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 882 GIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKE-PSKISFE 922
G Q CFD E + N RR+ Q++ S +Q++Q+ P FE
Sbjct: 839 GEQKCFDWELMTNFRRL--PQSHGSNVQQREQQPAPRPEDFE 878
Score = 38 (18.4 bits), Expect = 7.7e-50, Sum P(5) = 7.7e-50
Identities = 8/13 (61%), Positives = 10/13 (76%)
Query: 1097 KTVADVVEALIGA 1109
K + DV+EALI A
Sbjct: 1610 KALGDVLEALIAA 1622
Score = 37 (18.1 bits), Expect = 4.3e-27, Sum P(4) = 4.3e-27
Identities = 7/29 (24%), Positives = 15/29 (51%)
Query: 201 DYWQKIHDLETLMNSKVYTCASESVLSNF 229
D W K+ L +++N + +E++ F
Sbjct: 984 DLWLKLIFLPSILNRMYFLLHAEALRKRF 1012
>FB|FBgn0039016 [details] [associations]
symbol:Dcr-1 "Dicer-1" species:7227 "Drosophila melanogaster"
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0016443 "bidentate ribonuclease III activity" evidence=IDA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0016246 "RNA interference" evidence=IDA;IMP;TAS] [GO:0005524
"ATP binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=IMP;TAS] [GO:0035087 "siRNA loading
onto RISC involved in RNA interference" evidence=IMP] [GO:0016442
"RNA-induced silencing complex" evidence=IDA] [GO:0031054
"pre-miRNA processing" evidence=IDA;IMP;TAS] [GO:0035195 "gene
silencing by miRNA" evidence=TAS] [GO:0042078 "germ-line stem cell
division" evidence=IMP] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0045448 "mitotic cell
cycle, embryonic" evidence=IMP] [GO:0007279 "pole cell formation"
evidence=IMP] [GO:0033227 "dsRNA transport" evidence=IMP]
[GO:0007367 "segment polarity determination" evidence=IGI]
[GO:0048813 "dendrite morphogenesis" evidence=IMP] [GO:0070883
"pre-miRNA binding" evidence=IDA] [GO:0003727 "single-stranded RNA
binding" evidence=IDA] [GO:0030727 "germarium-derived female
germ-line cyst formation" evidence=IMP] [GO:0007294
"germarium-derived oocyte fate determination" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR001650
InterPro:IPR003100 InterPro:IPR005034 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 PROSITE:PS50821 PROSITE:PS51194 PROSITE:PS51327
SMART:SM00358 SMART:SM00490 SMART:SM00535 SMART:SM00949
EMBL:AE014297 GO:GO:0005524 GO:GO:0005737 GO:GO:0007294
GO:GO:0045448 GO:GO:0046872 GO:GO:0003727 GO:GO:0048813
GO:GO:0003725 GO:GO:0004386 SUPFAM:SSF101690 GO:GO:0016442
GO:GO:0031054 GO:GO:0033227 GO:GO:0007279 GO:GO:0030422
GO:GO:0007367 GO:GO:0035087 GO:GO:0030727 GO:GO:0042078 KO:K11592
Gene3D:1.10.1520.10 SUPFAM:SSF69065 CTD:42693
GeneTree:ENSGT00510000046789 EMBL:AY050230 RefSeq:NP_524453.1
UniGene:Dm.1283 ProteinModelPortal:Q9VCU9 SMR:Q9VCU9 DIP:DIP-23028N
IntAct:Q9VCU9 MINT:MINT-923321 STRING:Q9VCU9 PaxDb:Q9VCU9
PRIDE:Q9VCU9 EnsemblMetazoa:FBtr0084324 GeneID:42693
KEGG:dme:Dmel_CG4792 UCSC:CG4792-RA FlyBase:FBgn0039016
eggNOG:COG0571 InParanoid:Q9VCU9 OMA:FLTPRYV OrthoDB:EOG44B8H0
PhylomeDB:Q9VCU9 GenomeRNAi:42693 NextBio:830091 Bgee:Q9VCU9
GermOnline:CG4792 GO:GO:0016443 GO:GO:0070883 Uniprot:Q9VCU9
Length = 2249
Score = 348 (127.6 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 100/255 (39%), Positives = 131/255 (51%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYN 1207
L E L Y FRD S L++A+TH SY + CYQRLEFLGDAVLDYLIT +LY
Sbjct: 1990 LSGFEEFEESLGYKFRDRSYLLQAMTHASYTPNRLTDCYQRLEFLGDAVLDYLITRHLYE 2049
Query: 1208 KYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL------YKRI-----NI 1256
SPG LTD+RSA VNN +A +V+HG HK H S L + RI +
Sbjct: 2050 DPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFRHLSPGLNDVIDRFVRIQQENGHC 2109
Query: 1257 TVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
+ + LS E V PKALGD+ ES+AGAIF+DS + +VV+ ++ P I
Sbjct: 2110 ISEEYYLLSEEECDDAEDV-EVPKALGDVFESIAGAIFLDSNMSLDVVWHVYSNMMSPEI 2168
Query: 1317 TP--ETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANG--RLFEHTFLDA 1372
++ P+REL E + KP + VTV+V G R + A
Sbjct: 2169 EQFSNSVPKSPIRELLEL-EPETAKFGKPEKLADGRRVRVTVDVFCKGTFRGIGRNYRIA 2227
Query: 1373 DKKTAKKVACKEVLK 1387
K TA K A +++ K
Sbjct: 2228 -KCTAAKCALRQLKK 2241
Score = 171 (65.3 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 36/91 (39%), Positives = 57/91 (62%)
Query: 977 PTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIIS 1036
P+I +L+A+T + +LE LET+GDSFLKYA + L+ TY+N HEG LS + + ++
Sbjct: 1723 PSI-ILQALTMSNANDGINLERLETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVA 1781
Query: 1037 NAALCKLGCEQKLPGFIRTESFDPK-MWIIP 1066
N L +LG ++L ++ F+P W+ P
Sbjct: 1782 NLNLYRLGRRKRLGEYMIATKFEPHDNWLPP 1812
Score = 171 (65.3 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 41/126 (32%), Positives = 71/126 (56%)
Query: 384 GVEDIRCIIFVERVITAIVLQSLLSELLPR-------HCTWKTKYIAG-NNSGIQCQ-SR 434
G + + +I+ + TA VL LL+E+ R C + T +A + +
Sbjct: 489 GSDTLCALIYCNQNHTARVLFELLAEISRRDPDLKFLRCQYTTDRVADPTTEPKEAELEH 548
Query: 435 KKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494
++Q E+++ FR NV++ TS+LEEG+DV CNLV+ +DP T S++Q +GRAR +
Sbjct: 549 RRQEEVLKRFRMHDCNVLIGTSVLEEGIDVPKCNLVVRWDPPTTYRSYVQCKGRARAAPA 608
Query: 495 DYLLMV 500
++++V
Sbjct: 609 YHVILV 614
Score = 133 (51.9 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 36/97 (37%), Positives = 53/97 (54%)
Query: 551 TGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHI--NKEMGIC----TLYLPNNCPIQT 604
TG L S+++L+ YC+RLPSD + K T + N+ G+ TL LP N P++
Sbjct: 816 TGASVDLGSAIALVNKYCARLPSDTFTKLTALWRCTRNERAGVTLFQYTLRLPINSPLKH 875
Query: 605 VIAQGNIKT---LKQAACLEACKKLHQIGALTDNLLP 638
I + T ++ A L+AC +LH+IG L D L P
Sbjct: 876 DIVGLPMPTQTLARRLAALQACVELHRIGELDDQLQP 912
Score = 127 (49.8 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 72/308 (23%), Positives = 129/308 (41%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R++Q+E L A ++NTI+ L S K IA+ LL+ + R+
Sbjct: 18 RDFQVELLATAYERNTIICLGHRSSKEFIALKLLQELSRRARRHGRVSVYLSCEVGTSTE 77
Query: 83 X-XXEAIKMH-TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
+ H TDL+V + DM + F D W + + V ++ P+ L L
Sbjct: 78 PCSIYTMLTHLTDLRVWQEQPDMQIPF-DHC-WTD----YHVSILRPEGFLYLLETRELL 131
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
L+ +++++L++CH + Y I F + ++ ++ PRI G+ A P+ S + E
Sbjct: 132 LSSVELIVLEDCHDSA---VYQRIRPLFENHIMPAPPADRPRILGL-AGPLHS--AGCEL 185
Query: 201 DYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKF------YKYDEIPHALYTHLA 254
+ L TL S + + S + + + + ++ ++ DE+ L L
Sbjct: 186 QQLSAM--LATLEQSVLCQIETASDIVTVLRYCSRPHEYIVQCAPFEMDELSLVLADVLN 243
Query: 255 DELAMIELKHTRS-LENLDLNEAQAELIR---KKVSKIN--STLLYCLSELGVWLALKAA 308
+ + L H E ++ EL KV +N ++LL L E+G W +AA
Sbjct: 244 THKSFL-LDHRYDPYEIYGTDQFMDELKDIPDPKVDPLNVINSLLVVLHEMGPWCTQRAA 302
Query: 309 ETI-SCYE 315
C E
Sbjct: 303 HHFYQCNE 310
Score = 100 (40.3 bits), Expect = 4.2e-31, Sum P(5) = 4.2e-31
Identities = 32/94 (34%), Positives = 49/94 (52%)
Query: 1157 LLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGY 1216
L+ + PS++++ALT S I +RLE +GD+ L Y IT YLY Y + G
Sbjct: 1715 LVGHPGPSPSIILQALTM-SNANDGIN--LERLETIGDSFLKYAITTYLYITYENVHEGK 1771
Query: 1217 LTDMRSASVNN-DCYALSSVKHGLHKHILHASHE 1249
L+ +RS V N + Y L K L ++++ E
Sbjct: 1772 LSHLRSKQVANLNLYRLGRRKR-LGEYMIATKFE 1804
Score = 84 (34.6 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 25/73 (34%), Positives = 38/73 (52%)
Query: 1068 DNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIG 1127
D+S ND S F + + + K++AD VEALIGA+L G L+F+ +G
Sbjct: 1875 DDSND-SCNDFSCFIPYNL--VSQHSIPDKSIADCVEALIGAYLIECGPRGALLFMAWLG 1931
Query: 1128 IKVDFVNVPYQRQ 1140
++V +P RQ
Sbjct: 1932 VRV----LPITRQ 1940
Score = 73 (30.8 bits), Expect = 5.6e-74, Sum P(7) = 5.6e-74
Identities = 30/123 (24%), Positives = 56/123 (45%)
Query: 846 QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLN-----GRRIFH 900
Q + + + HL+ S F +N T+K +Y +YG+ + +PLL+ R F
Sbjct: 1147 QYFYVAEICPHLSPLSCFPGDN--YRTFKHYYLVKYGLTIQNTSQPLLDVDHTSARLNFL 1204
Query: 901 VQNYLSK------CRQQKQKEPSKISFE----LPPELCRIIMAPISLSTFYSFTFVPSIM 950
Y+++ ++ K + + E L PELC + P SL + + +P I+
Sbjct: 1205 TPRYVNRKGVALPTSSEETKRAKRENLEQKQILVPELCTVHPFPASL--WRTAVCLPCIL 1262
Query: 951 HRL 953
+R+
Sbjct: 1263 YRI 1265
Score = 63 (27.2 bits), Expect = 2.4e-27, Sum P(5) = 2.4e-27
Identities = 14/58 (24%), Positives = 27/58 (46%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIR 1054
+ LE LGD+ L Y ++ L++ + + G L+ + +++N L F R
Sbjct: 2029 QRLEFLGDAVLDYLITRHLYEDPRQHSPGALTDLRSALVNNTIFASLAVRHGFHKFFR 2086
Score = 46 (21.3 bits), Expect = 3.3e-71, Sum P(7) = 3.3e-71
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 863 FTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS--KCRQQKQKEPSKIS 920
FT N + T E+ QL + N R+ +N L + + QKEP+ I
Sbjct: 1507 FTSKNEAETIETAQEVEKRQKQLSIIQATNANERQYQQTKNLLIGFNFKHEDQKEPATIR 1566
Query: 921 FE 922
+E
Sbjct: 1567 YE 1568
Score = 39 (18.8 bits), Expect = 6.1e-27, Sum P(4) = 6.1e-27
Identities = 7/41 (17%), Positives = 22/41 (53%)
Query: 223 ESVLSNFIPFSTAKFKFYKYDEIPHALYTHL-ADELAMIEL 262
E++ +F+ ++ + + Y+ + +HL + ++A + L
Sbjct: 1745 ETIGDSFLKYAITTYLYITYENVHEGKLSHLRSKQVANLNL 1785
Score = 38 (18.4 bits), Expect = 4.6e-43, Sum P(5) = 4.6e-43
Identities = 9/32 (28%), Positives = 22/32 (68%)
Query: 116 EMSKHEVLVMTPQIL-LDGLRLSYFKLNMIKV 146
E++K V++ + QI+ ++G L+Y N++++
Sbjct: 1036 ELAKERVILTSEQIVCINGF-LNYTFTNVLRL 1066
Score = 37 (18.1 bits), Expect = 2.8e-70, Sum P(7) = 2.8e-70
Identities = 8/14 (57%), Positives = 9/14 (64%)
Query: 905 LSKCRQQKQKEPSK 918
L K R+ KQKE K
Sbjct: 1309 LKKSRESKQKESLK 1322
>UNIPROTKB|I3L6Y9 [details] [associations]
symbol:DICER1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000630 "positive regulation of miRNA metabolic
process" evidence=IEA] [GO:0071335 "hair follicle cell
proliferation" evidence=IEA] [GO:0070173 "regulation of enamel
mineralization" evidence=IEA] [GO:0060576 "intestinal epithelial
cell development" evidence=IEA] [GO:0060119 "inner ear receptor
cell development" evidence=IEA] [GO:0055013 "cardiac muscle cell
development" evidence=IEA] [GO:0051726 "regulation of cell cycle"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:0051225 "spindle assembly" evidence=IEA] [GO:0048754 "branching
morphogenesis of an epithelial tube" evidence=IEA] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=IEA]
[GO:0048536 "spleen development" evidence=IEA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] [GO:0045664 "regulation of neuron
differentiation" evidence=IEA] [GO:0045069 "regulation of viral
genome replication" evidence=IEA] [GO:0043066 "negative regulation
of apoptotic process" evidence=IEA] [GO:0035264 "multicellular
organism growth" evidence=IEA] [GO:0035198 "miRNA binding"
evidence=IEA] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=IEA] [GO:0031643 "positive regulation of myelination"
evidence=IEA] [GO:0031069 "hair follicle morphogenesis"
evidence=IEA] [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0030423 "targeting of mRNA for destruction involved in RNA
interference" evidence=IEA] [GO:0030422 "production of siRNA
involved in RNA interference" evidence=IEA] [GO:0030324 "lung
development" evidence=IEA] [GO:0021987 "cerebral cortex
development" evidence=IEA] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=IEA] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=IEA] [GO:0019827 "stem cell
maintenance" evidence=IEA] [GO:0016442 "RNA-induced silencing
complex" evidence=IEA] [GO:0010070 "zygote asymmetric cell
division" evidence=IEA] [GO:0009791 "post-embryonic development"
evidence=IEA] [GO:0006915 "apoptotic process" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0001525
"angiogenesis" evidence=IEA] [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR000999
InterPro:IPR001650 InterPro:IPR003100 InterPro:IPR005034
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 Pfam:PF00636
Pfam:PF02170 Pfam:PF03368 PROSITE:PS50142 PROSITE:PS50821
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
SMART:SM00949 GO:GO:0005524 GO:GO:0010070 GO:GO:0006915
GO:GO:0021987 GO:GO:0043066 GO:GO:0045664 GO:GO:0051225
GO:GO:0030324 GO:GO:0045944 GO:GO:0001525 GO:GO:0051607
GO:GO:0000122 GO:GO:0051726 GO:GO:0021522 GO:GO:0009791
GO:GO:0048536 GO:GO:0003725 GO:GO:0035264 GO:GO:0035116
GO:GO:0035198 SUPFAM:SSF101690 GO:GO:0016442 GO:GO:0031054
GO:GO:0030422 GO:GO:0030423 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0019827 GO:GO:0055013 GO:GO:0031069
GO:GO:0048754 GO:GO:0045069 GO:GO:0008026 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 GeneTree:ENSGT00510000046789
OMA:FLEYDQE GO:GO:0071335 GO:GO:0060576 GO:GO:0021889 GO:GO:0031643
GO:GO:0070173 GO:GO:0048713 EMBL:CU915626
Ensembl:ENSSSCT00000022914 Uniprot:I3L6Y9
Length = 1565
Score = 313 (115.2 bits), Expect = 6.7e-65, Sum P(5) = 6.7e-65
Identities = 94/279 (33%), Positives = 146/279 (52%)
Query: 387 DIRC-IIFVERVITAIVLQSLLSELL---PRHCTWKTKYIAGNNSGI------QCQSR-K 435
+I C IIFVER TA+VL L+ E P + +I G+ G Q ++ +
Sbjct: 440 NILCGIIFVERRYTAVVLNRLIKEAGKQDPELAYISSNFITGHGIGKNQPRNKQMEAEFR 499
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
KQ E++ +FR N+++ATSI+EEG+D+ CNLV+ FD S++QS+GRAR S+
Sbjct: 500 KQEEVLRKFRAHETNLLIATSIVEEGVDIPKCNLVVRFDLPTEYRSYVQSKGRARAPISN 559
Query: 496 YLLM-----VKS--GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL--NNHMYGEDFY 546
Y+++ +KS D T +E L NK K V S P+ ++ ++
Sbjct: 560 YVMLADTDKIKSFEEDLKTYKAIEKILR--NKCSKSVES-GETDLEPVVDDDDIFPPYVL 616
Query: 547 HVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEM--GI--CTLYLPNNCPI 602
+ G T+++++ I YC+RLPSD + PK +E+ G TLYLP N P+
Sbjct: 617 RPDDGGPRVTINTAIGHINRYCARLPSDPFTHLAPKCR-TRELPDGTFYSTLYLPINSPL 675
Query: 603 QTVIA---QGNIKTLKQAACLEACKKLHQIGALTDNLLP 638
+ I I+ ++ L C+KLH+IG L D+L+P
Sbjct: 676 RASIVGPPMSCIRLAERVVALICCEKLHKIGELDDHLMP 714
Score = 311 (114.5 bits), Expect = 6.7e-65, Sum P(5) = 6.7e-65
Identities = 104/304 (34%), Positives = 144/304 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR---KPSP 68
+E D + R YQ+E LE AL NTIV L TGSGKT IA++L + +Y +R +
Sbjct: 34 QEAIHDNIYTPRKYQVELLEAALDHNTIVCLNTGSGKTFIAVLLTKELSYQIRGDFNRNG 93
Query: 69 XXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDF-WDGATWKEEMSKHEVLVMTP 127
A++ H+DLKVG+Y ++ V+ W W +E +KH+VLVMT
Sbjct: 94 KRTVFLVNSANQVAQQVSAVRTHSDLKVGEY-SNLEVNASWTKEKWNQEFTKHQVLVMTC 152
Query: 128 QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMT 187
+ L+ L+ Y L+ I +L+ DECH A H Y IM +L E S PRI G+T
Sbjct: 153 SVALNVLKNGYLALSDINLLVFDECHLAILDHPYREIM-----KLCENCPS-CPRILGLT 206
Query: 188 ASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247
AS + K E + +KI LE ++ S T VL + T++ D P
Sbjct: 207 ASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVLDRY----TSQPCEIVVDCGPF 260
Query: 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK--VSK-INSTLLYCLSELGVWLA 304
+ L + L M EL+ + N D N A R +SK I S L LG W A
Sbjct: 261 TDRSGLYERLLM-ELEEALNFIN-DCNIAVHSKERDSTLISKQILSDCRAVLVVLGPWCA 318
Query: 305 LKAA 308
K A
Sbjct: 319 DKVA 322
Score = 183 (69.5 bits), Expect = 6.7e-65, Sum P(5) = 6.7e-65
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 1294 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 1353
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 1354 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 1387
Score = 103 (41.3 bits), Expect = 1.3e-56, Sum P(4) = 1.3e-56
Identities = 30/77 (38%), Positives = 42/77 (54%)
Query: 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSA 1223
+P L+++ALT + +RLE LGD+ L + IT YL+ YP G L+ MRS
Sbjct: 1290 NPGLILQALTLSN---ASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSK 1346
Query: 1224 SVNN-DCYALSSVKHGL 1239
V+N + Y L K GL
Sbjct: 1347 KVSNCNLYRLGK-KKGL 1362
Score = 89 (36.4 bits), Expect = 4.8e-42, Sum P(5) = 4.8e-42
Identities = 72/283 (25%), Positives = 117/283 (41%)
Query: 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK--VLILDECHHARGKHQYACIMTEF 168
A+W +E E Q+L+ ++ LN++K L L + + + I+
Sbjct: 131 ASWTKEKWNQEFT--KHQVLVMTCSVA---LNVLKNGYLALSDINLLVFDECHLAILDHP 185
Query: 169 YHRLLETGDS--NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL 226
Y +++ ++ + PRI G+TAS + K E + +KI LE ++ S T VL
Sbjct: 186 YREIMKLCENCPSCPRILGLTASILNGKCDPEELE--EKIQKLEKILKSNAETATDLVVL 243
Query: 227 SNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK-- 284
+ T++ D P + L + L M EL+ + N D N A R
Sbjct: 244 DRY----TSQPCEIVVDCGPFTDRSGLYERLLM-ELEEALNFIN-DCNIAVHSKERDSTL 297
Query: 285 VSK-INSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQAL 343
+SK I S L LG W A K A + + EQ E + +KF +
Sbjct: 298 ISKQILSDCRAVLVVLGPWCADKVAGMMVRELQKYIKHEQ-----EELHRKFLL-FTDTF 351
Query: 344 VTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386
+ V + E G S LD +T K++ L+E L +Y+ E
Sbjct: 352 LRKVHALCE---GHFSPAALDLRFVTPKVIKLLEILRKYKPYE 391
Score = 63 (27.2 bits), Expect = 6.7e-65, Sum P(5) = 6.7e-65
Identities = 29/97 (29%), Positives = 44/97 (45%)
Query: 872 TYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLS-KCRQQKQK-------EPSKISFE- 922
T+ ++Y+ +Y + L +PLL+ N L+ + QK K E K +E
Sbjct: 967 TFAEYYKTKYNLDLTNLNQPLLDVDHTSSRLNLLTPRHLNQKGKALPLSSAEKRKAKWES 1026
Query: 923 ------LPPELCRIIMAPISLSTFYSFTFVPSIMHRL 953
L PELC I PI S + +PSI++RL
Sbjct: 1027 LQNKQILVPELCAI--HPIPASLWRKAVCLPSILYRL 1061
Score = 48 (22.0 bits), Expect = 6.7e-65, Sum P(5) = 6.7e-65
Identities = 8/17 (47%), Positives = 13/17 (76%)
Query: 1094 VKSKTVADVVEALIGAF 1110
+ K++AD VEAL+G +
Sbjct: 1549 IADKSIADCVEALLGCY 1565
Score = 45 (20.9 bits), Expect = 1.4e-20, Sum P(3) = 1.4e-20
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 1239 LHKHILHASHELYKRINITVDSF 1261
L K+I H EL+++ + D+F
Sbjct: 329 LQKYIKHEQEELHRKFLLFTDTF 351
Score = 44 (20.5 bits), Expect = 7.8e-10, Sum P(4) = 7.8e-10
Identities = 7/25 (28%), Positives = 14/25 (56%)
Query: 736 QLIPNQVLLCRRFQITLFRVIMDHN 760
+ I + + R++Q+ L +DHN
Sbjct: 35 EAIHDNIYTPRKYQVELLEAALDHN 59
Score = 37 (18.1 bits), Expect = 9.3e-50, Sum P(4) = 9.3e-50
Identities = 6/12 (50%), Positives = 8/12 (66%)
Query: 1331 EYCQKNHFSMKK 1342
++CQ NH S K
Sbjct: 1195 DFCQGNHLSYYK 1206
>ASPGD|ASPL0000041548 [details] [associations]
symbol:dclB species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0006396 "RNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001650
InterPro:IPR005034 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517 PROSITE:PS50142
PROSITE:PS51194 PROSITE:PS51327 SMART:SM00490 SMART:SM00535
GO:GO:0005524 GO:GO:0046872 EMBL:BN001306 GO:GO:0051607
GO:GO:0003723 GO:GO:0006396 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AACD01000052
ProteinModelPortal:P0C5H7 HOGENOM:HOG000048683 OrthoDB:EOG4JWZNK
Uniprot:P0C5H7
Length = 1429
Score = 297 (109.6 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 107/375 (28%), Positives = 171/375 (45%)
Query: 868 GSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQK---EPSKISFELP 924
G + +K+ + R G L + +P + RR + L+K R + + P+K L
Sbjct: 785 GELLIFKR-WLNRSG-DLELECDPYPSKRRNLLQRQTLAKKRPAEDEILGSPTKKRI-LS 841
Query: 925 PELCRIIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXDHCMQNVTIPTIK-VLE 983
C I P S + F F +P I+ RL++ + ++++ ++ V+
Sbjct: 842 ASHCTIDRLPASETVFGRF--IPVILDRLEAALVATRLC----ETVLRDIQFQDLRHVIT 895
Query: 984 AITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
AIT Q + E GDS LK+ + LF N HEG L+ ++ NA L +
Sbjct: 896 AITMPLAQAPTDYQRYEFFGDSVLKFTVAASLFYNNPNWHEGYLTETLHALVQNARLTRA 955
Query: 1044 GCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGR-KKVKSKTVADV 1102
+Q L +I + F P+ W P L + K+Y + + + +K +ADV
Sbjct: 956 ALDQGLDAYIISNRFTPRKWSAP-------------LIS-EKLYASASTRSMSAKVLADV 1001
Query: 1103 VEALIGAFLSTGGENVGLIFLDRI--GIKVDFVNVPYQRQFQV---HAE-RLVNVRHLES 1156
VEALIGA GG + + R I++ +P + H + L+ +LE+
Sbjct: 1002 VEALIGAAYIDGGLHKAQSCIVRFLPEIELPETKLPRPESMPMSKDHKKPHLIQQENLEN 1061
Query: 1157 LLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGY 1216
+ Y+F+D +LL+EALTH S + YQRLEFLGDAVLD LI + + G
Sbjct: 1062 HIGYTFKDKTLLMEALTHPSCPYDTSIQSYQRLEFLGDAVLDMLIVDLIRAHHVECQQGE 1121
Query: 1217 LTDMRSASVNNDCYA 1231
+T ++ A VN A
Sbjct: 1122 MTKIKHAIVNGHLLA 1136
Score = 254 (94.5 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 87/285 (30%), Positives = 138/285 (48%)
Query: 377 ESLLEY-RGVEDIRC--IIFVERVITAIVLQSLLSELLPRHCTWKT-KYIAGNNSGIQ-- 430
E+L+ + EDI +IFVE+ V+ LLS ++T +I +NS +
Sbjct: 334 EALISFLMSTEDINFSGLIFVEQRAAVTVMSYLLSTHPSTRDRFRTGSFIGMSNSTNRKT 393
Query: 431 ----CQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486
S K Q + +++FR G N+IVAT +L+EG+DV +C++VI ++ + SFIQ R
Sbjct: 394 MLGDLLSAKMQPDTLDDFRYGRKNLIVATDVLKEGIDVSACSVVICYNIPKGFESFIQRR 453
Query: 487 GRARMQNSDYLLMVKS-GDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNN-HMYGED 544
GRAR QNS Y +M+ + D +T + + + K+ +E L ED
Sbjct: 454 GRARRQNSTYSMMLSTEDDGSTLDKWQKF----EKIMEEACLEDRRRTEELRALGSLDED 509
Query: 545 F---YHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMG---ICTLYLPN 598
+ V STG I T ++ + +C LP Y + P+F + G + LP+
Sbjct: 510 VCTRFCVRSTGAILTAEYAMQHLVHFCDTLPRQNYVEDKPEFSFERNDGGLLRAKVILPS 569
Query: 599 NCPIQTVIAQGNI--KT---LKQAACLEACKKLHQIGALTDNLLP 638
+ + A+G KT K+ A A K L++ G + DNLLP
Sbjct: 570 SVNPKVRRAEGKAWWKTERAAKKEAAFYAYKALYEHGLVNDNLLP 614
Score = 220 (82.5 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 66/186 (35%), Positives = 88/186 (47%)
Query: 12 EEVSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXX 71
EE SA+ AR+YQLE E +LK N IV + TGSGKT IA LLR + L
Sbjct: 6 EERSAEHR--ARSYQLEMFEASLKGNIIVVMGTGSGKTQIA--LLR-IIHELENSDGKLI 60
Query: 72 XXXXXXXXXXXXXXEAIKMHTD-LKVGKYWGDMGVDFW-DGATWKEEMSKHEVLVMTPQI 129
I H +K G V+ W + A W + +V+V TP +
Sbjct: 61 WFLAPTVPLCLQQHRVISQHIPAVKSRTLLGSDKVELWTEQAVWDAVLEGLQVIVSTPAV 120
Query: 130 LLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL-ETGDSNLPRIFGMTA 188
L D + + +++ + +LI DE HH KH IM FYH L E G +PRI G+TA
Sbjct: 121 LHDAMTHGFVRISRLGLLIFDEAHHCIRKHPTNMIMRNFYHPALQEYGPGAVPRILGLTA 180
Query: 189 SPIKSK 194
S S+
Sbjct: 181 SAGSSR 186
Score = 153 (58.9 bits), Expect = 1.7e-43, Sum P(4) = 1.7e-43
Identities = 53/175 (30%), Positives = 90/175 (51%)
Query: 1148 LVNVRHLESLL-NYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLY 1206
LV R E++L + F+D ++ A+T L + P YQR EF GD+VL + + L+
Sbjct: 872 LVATRLCETVLRDIQFQDLRHVITAIT---MPLAQAPTDYQRYEFFGDSVLKFTVAASLF 928
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266
P GYLT+ A V N +++ GL +I+ ++ ++ + + S EKL
Sbjct: 929 YNNPNWHEGYLTETLHALVQNARLTRAALDQGLDAYII-SNRFTPRKWSAPLIS-EKLYA 986
Query: 1267 GSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQS-IRPLLEPMITPET 1320
++ S+++ K L D++E+L GA ++D G ++ QS I L + PET
Sbjct: 987 SAST--RSMSA--KVLADVVEALIGAAYIDGGLHKA---QSCIVRFLPEIELPET 1034
Score = 70 (29.7 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 21/63 (33%), Positives = 28/63 (44%)
Query: 1239 LHKHILHASHELYKRINITVDSF-EKLSLGSTFGWE--SVTSFPKALGDIIESLAGAIFV 1295
LH S R N+ S L+ + + W S K D++ES+ GAIFV
Sbjct: 1188 LHVEPESGSSNALTRHNLLCPSILHALNNTTAYPWSLFSAIHADKFFSDVVESIIGAIFV 1247
Query: 1296 DSG 1298
DSG
Sbjct: 1248 DSG 1250
Score = 62 (26.9 bits), Expect = 4.1e-34, Sum P(4) = 4.1e-34
Identities = 15/35 (42%), Positives = 26/35 (74%)
Query: 1097 KTVADVVEALIGA-FLSTGGENVGLI--FLDRIGI 1128
K +DVVE++IGA F+ +GG+ +G F++R+G+
Sbjct: 1232 KFFSDVVESIIGAIFVDSGGD-LGACAGFIERLGL 1265
Score = 54 (24.1 bits), Expect = 4.6e-12, Sum P(3) = 4.6e-12
Identities = 10/30 (33%), Positives = 20/30 (66%)
Query: 442 EEFRRGLVNVIVATSILEEGLDVQSCNLVI 471
++F R L +++V + +E ++Q+ NLVI
Sbjct: 1359 QDFGRDLDDIVVTGCLSKEDAEIQAANLVI 1388
Score = 45 (20.9 bits), Expect = 2.2e-40, Sum P(4) = 2.2e-40
Identities = 28/146 (19%), Positives = 56/146 (38%)
Query: 501 KSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSS 560
+ G T + L + + R+E+L + +P L +Y S +TL
Sbjct: 186 REGLQTIEMNLNSVCTTPQAHRQELLEYTHMP--ELRRVLYTPLMKENASLWEGSTLQKL 243
Query: 561 VSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACL 620
+ YCS K HI +E+GI ++ +++ + + L
Sbjct: 244 LERDNTYCSGQMKTFVCKAV---HIFQELGIWAAEYFIRASVEELLSHAYVHSKID---L 297
Query: 621 EACKKLHQIGALTDNLLPDIVVEKHD 646
+ ++ + + L+ + +PDI V D
Sbjct: 298 DYDEREYLVNILSKSPVPDIDVHSTD 323
Score = 37 (18.1 bits), Expect = 6.2e-61, Sum P(5) = 6.2e-61
Identities = 17/62 (27%), Positives = 26/62 (41%)
Query: 244 EIPHALYTHLADELAMI-ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVW 302
E+ LYT L E A + E + L D ++ + V K ++ ELG+W
Sbjct: 218 ELRRVLYTPLMKENASLWEGSTLQKLLERDNTYCSGQM-KTFVCKA----VHIFQELGIW 272
Query: 303 LA 304
A
Sbjct: 273 AA 274
>UNIPROTKB|A4RHU9 [details] [associations]
symbol:DCL2 "Dicer-like protein 2" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR005034 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF00636 Pfam:PF03368 PROSITE:PS00517
PROSITE:PS00690 PROSITE:PS50137 PROSITE:PS50142 PROSITE:PS51194
PROSITE:PS51327 SMART:SM00490 SMART:SM00535 GO:GO:0005524
GO:GO:0046872 GO:GO:0051607 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:CM001232 GO:GO:0008026 GO:GO:0050688 eggNOG:COG1111
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 OrthoDB:EOG4JWZNK
RefSeq:XP_003715365.1 GeneID:2683150 KEGG:mgr:MGG_12357
Uniprot:A4RHU9
Length = 1485
Score = 392 (143.0 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 160/536 (29%), Positives = 260/536 (48%)
Query: 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
AR YQLE + +++QN IV ++TGSGKT +A++ +R A L R P
Sbjct: 65 ARAYQLEMFQASMQQNIIVSMDTGSGKTQVAVLRIR--AELERTPPEKRVWFLAPTVALC 122
Query: 82 XXXXEAIKMHTDLKVGK---YWGDMGVDFW-DGATWKEEMSKHEVLVMTPQILLDGLRLS 137
E I+ + +KV GD VD W D TW ++ V+V T IL + L +
Sbjct: 123 AQQYEVIR--SQIKVANSIVMTGDDNVDSWSDVQTWDAVLANVRVVVCTYMILFEALSHA 180
Query: 138 YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI-KSKVS 196
+ ++ I +L++DE H+ GK IM FY GD ++P I G+TASP+ KS +S
Sbjct: 181 FVTMDSISLLVMDEAHNCTGKFPGRLIMKRFYMPRKSAGD-HVPHILGLTASPVMKSDLS 239
Query: 197 SSEQDYWQKIHDLETLMNS--KVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL-YT-- 251
S E DLE+ ++S + T E + +N + T YK ++ + YT
Sbjct: 240 SME--------DLESSLDSVCRGPTLQREELFAN-VHQPTMTVTTYKECDLRSPVQYTRN 290
Query: 252 ----HLADE-LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALK 306
HLA E L + E + L ++ EL R ++K+++ Y +++ L K
Sbjct: 291 MNNLHLAFENLDIAEDPYVLHLMGQRTPKSLRELDRI-LTKLDT---YTQNQMKA-LQRK 345
Query: 307 AAETISCYESDFFAWEQLDGFGETIIKKFGS-DA-SQALVTYVPSGAEW---SIGDDSKF 361
++ S + + W +D + +++K + DA S L ++ + +I +
Sbjct: 346 SS---SLFR-ELGQWA-VDSYIYNVVEKVSNLDARSSWLGGWLDDEQRYLHRAIQGINAL 400
Query: 362 NLDSGLLTEKIVCL-IESLLEY-RGVEDIRC-IIFVERVITAIVLQSLLSELLPRHCTWK 418
+ + + ++ + ++ LL RG E I+FV+ TA +L LL+ + + +K
Sbjct: 401 PVSAAIPAPEMTSIKLQVLLRILRGYEGSPVGIVFVKERATAGILSQLLAIIPDINARYK 460
Query: 419 TKYIAGNNSGIQCQSRKKQ-NEIV---------EEFRRGLVNVIVATSILEEGLDVQSCN 468
+ G + + SRK +E++ E+FR G +N++VATS+LEEG+DV CN
Sbjct: 461 VGCMVGTS---RYMSRKMNIHEVLQQGDDLLALEKFRSGAINLLVATSVLEEGIDVPVCN 517
Query: 469 LVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKE 524
LVI FD + SFIQ RGRARM+ S LM++ DS + L + K R E
Sbjct: 518 LVICFDMPANLKSFIQRRGRARMRESKLHLMIEE-DSLVSVKDWGALEAAMKQRYE 572
Score = 265 (98.3 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 93/328 (28%), Positives = 148/328 (45%)
Query: 909 RQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSXXXXXXXXXXXXD 968
++ + P + + +P +LC P +L VPSI ++
Sbjct: 940 KEYQTSSPRRFDYIIPEQLCTFDTVPATLVQLGML--VPSITQAMEPYFVAQELLRRTAL 997
Query: 969 HCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLS 1028
+ I + ++ IT+ + E +E LGD+ LK A+ + EG LS
Sbjct: 998 GSLDFKDIDLVMMV--ITSSSAGRLTNYERVEFLGDAVLKLGAAVTCATNNLHFPEGYLS 1055
Query: 1029 VKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYV 1088
+ K+R++SN+ LCK L FI T + K W ++ +
Sbjct: 1056 LLKDRLVSNSRLCKAATALGLDQFIITRQYSLKQW--------------RNMLTAPEP-P 1100
Query: 1089 TGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKVDFVNVPYQRQ--FQVHAE 1146
T +K+ SKT+ADV EALIGA GG + L + + + ++ R +QV
Sbjct: 1101 TNTRKMSSKTLADVTEALIGAAYIEGGMSKALRCISLMIPNERWRSLDESRAVLYQVALN 1160
Query: 1147 RLV---NVRHLESLLNYSFRDPSLLVEALTHGSYMLP-EIPRCYQRLEFLGDAVLDYLIT 1202
+ + LE LL YSF SLL+EA+TH SY +P +RLEFLGD+VLD+++
Sbjct: 1161 DIPLPSTLGPLEELLGYSFNKKSLLIEAITHASYNIPGSAGSSLERLEFLGDSVLDFVVV 1220
Query: 1203 VYLYN-KYPGLSPGY-LTDMRSASVNND 1228
L++ K P Y + +R+A VN +
Sbjct: 1221 ARLFSVKDPAPIEHYNMHLLRTAVVNGE 1248
Score = 97 (39.2 bits), Expect = 2.2e-36, Sum P(3) = 2.2e-36
Identities = 46/179 (25%), Positives = 84/179 (46%)
Query: 1123 LDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEI 1182
L ++G+ V + + F A+ L+ L SL F+D L++ +T S +
Sbjct: 968 LVQLGMLVPSITQAMEPYFV--AQELLRRTALGSL---DFKDIDLVMMVITSSS--AGRL 1020
Query: 1183 PRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKH 1242
Y+R+EFLGDAVL V GYL+ ++ V+N ++ GL +
Sbjct: 1021 TN-YERVEFLGDAVLKLGAAVTCATNNLHFPEGYLSLLKDRLVSNSRLCKAATALGLDQF 1079
Query: 1243 ILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNR 1301
I+ + L + N+ + + E + +T ++S K L D+ E+L GA +++ G ++
Sbjct: 1080 IITRQYSLKQWRNM-LTAPEPPT--NT---RKMSS--KTLADVTEALIGAAYIEGGMSK 1130
Score = 82 (33.9 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 29/111 (26%), Positives = 47/111 (42%)
Query: 1262 EKLSLGSTFGWESVTSF--PKALGDIIESLAGAIFVDSG----CNREVVFQSIRPLLEPM 1315
+ L G + W+ + K D++E++ GA++VDSG C + + I L+
Sbjct: 1320 DALEHGQRYPWDLLARLRISKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGILRYLDRA 1379
Query: 1316 ITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFE 1366
+ HP EL Q N K A R + +A V + +G L E
Sbjct: 1380 LRDGVKILHPKEELGRVAQNNKVVYKVDKAKR-AARAEV---YEVSGELAE 1426
Score = 53 (23.7 bits), Expect = 2.5e-57, Sum P(4) = 2.5e-57
Identities = 10/27 (37%), Positives = 18/27 (66%)
Query: 612 KTLKQAACLEACKKLHQIGALTDNLLP 638
+ K+ A L+A K L++ G + ++LLP
Sbjct: 678 RNAKKDAALQAYKMLYEAGLINEHLLP 704
Score = 52 (23.4 bits), Expect = 1.0e-31, Sum P(3) = 1.0e-31
Identities = 17/54 (31%), Positives = 33/54 (61%)
Query: 1078 DSLFNGRKIY--VTGRKKVKSKTVADVVEALIGA-FLSTGGENVGLIFLDRIGI 1128
D+L +G++ + R ++ SK +DV+EA+IGA ++ +G ++R+GI
Sbjct: 1320 DALEHGQRYPWDLLARLRI-SKVHSDVLEAVIGAVWVDSGSLEECEKLIERVGI 1372
>UNIPROTKB|B3KRG4 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003725 "double-stranded RNA binding" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0006396
"RNA processing" evidence=IEA] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 UniGene:Hs.87889 HGNC:HGNC:17098 ChiTaRS:DICER1
EMBL:AK091513 IPI:IPI01025259 SMR:B3KRG4 STRING:B3KRG4
Ensembl:ENST00000556045 UCSC:uc001ydy.1 HOVERGEN:HBG092134
Uniprot:B3KRG4
Length = 820
Score = 386 (140.9 bits), Expect = 9.6e-50, Sum P(3) = 9.6e-50
Identities = 100/255 (39%), Positives = 138/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 566 NFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 625
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 626 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 685
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + E V+Q P++ P+I +
Sbjct: 686 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLETVWQVYYPMMRPLIEKFSA 745
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVEV G+ F+ + + AK
Sbjct: 746 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVEVVGKGK-FKG--VGRSYRIAKS 800
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 801 AAARRALRSLKANQP 815
Score = 183 (69.5 bits), Expect = 9.6e-50, Sum P(3) = 9.6e-50
Identities = 41/99 (41%), Positives = 59/99 (59%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
+L+A+T + F+LE LE LGDSFLK+A + LF TY + HEG LS + + +SN L
Sbjct: 195 ILQALTLSNASDGFNLERLEMLGDSFLKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNL 254
Query: 1041 CKLGCEQKLPGFIRTESFDPKM-WIIPGDNSGSYELNDD 1078
+LG ++ LP + FDP + W+ PG Y +N D
Sbjct: 255 YRLGKKKGLPSRMVVSIFDPPVNWLPPG-----YVVNQD 288
Score = 87 (35.7 bits), Expect = 9.6e-50, Sum P(3) = 9.6e-50
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 452 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 488
>RGD|1309381 [details] [associations]
symbol:Dicer1 "dicer 1, ribonuclease type III" species:10116
"Rattus norvegicus" [GO:0000122 "negative regulation of
transcription from RNA polymerase II promoter" evidence=ISO]
[GO:0001525 "angiogenesis" evidence=ISO] [GO:0001932 "regulation of
protein phosphorylation" evidence=ISO] [GO:0001942 "hair follicle
development" evidence=ISO] [GO:0003674 "molecular_function"
evidence=ND] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0004525 "ribonuclease III activity" evidence=ISO]
[GO:0005793 "endoplasmic reticulum-Golgi intermediate compartment"
evidence=IDA] [GO:0006396 "RNA processing" evidence=ISO]
[GO:0006915 "apoptotic process" evidence=ISO] [GO:0008150
"biological_process" evidence=ND] [GO:0008283 "cell proliferation"
evidence=ISO] [GO:0009791 "post-embryonic development"
evidence=ISO] [GO:0010070 "zygote asymmetric cell division"
evidence=ISO] [GO:0010468 "regulation of gene expression"
evidence=ISO] [GO:0010626 "negative regulation of Schwann cell
proliferation" evidence=ISO] [GO:0010628 "positive regulation of
gene expression" evidence=ISO] [GO:0014040 "positive regulation of
Schwann cell differentiation" evidence=ISO] [GO:0016442
"RNA-induced silencing complex" evidence=ISO] [GO:0019827 "stem
cell maintenance" evidence=ISO] [GO:0021522 "spinal cord motor
neuron differentiation" evidence=ISO] [GO:0021675 "nerve
development" evidence=ISO] [GO:0021889 "olfactory bulb interneuron
differentiation" evidence=ISO] [GO:0021987 "cerebral cortex
development" evidence=ISO] [GO:0030324 "lung development"
evidence=ISO] [GO:0030326 "embryonic limb morphogenesis"
evidence=ISO] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=ISO] [GO:0030423 "targeting of mRNA for
destruction involved in RNA interference" evidence=ISO] [GO:0030424
"axon" evidence=IDA] [GO:0030425 "dendrite" evidence=IDA]
[GO:0030426 "growth cone" evidence=IDA] [GO:0031054 "pre-miRNA
processing" evidence=ISO] [GO:0031069 "hair follicle morphogenesis"
evidence=ISO] [GO:0031641 "regulation of myelination" evidence=ISO]
[GO:0031643 "positive regulation of myelination" evidence=ISO]
[GO:0032290 "peripheral nervous system myelin formation"
evidence=ISO] [GO:0035116 "embryonic hindlimb morphogenesis"
evidence=ISO] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=ISO] [GO:0035198 "miRNA binding"
evidence=ISO] [GO:0035264 "multicellular organism growth"
evidence=ISO] [GO:0042487 "regulation of odontogenesis of
dentin-containing tooth" evidence=ISO] [GO:0042981 "regulation of
apoptotic process" evidence=ISO] [GO:0043066 "negative regulation
of apoptotic process" evidence=ISO] [GO:0045069 "regulation of
viral genome replication" evidence=ISO] [GO:0045595 "regulation of
cell differentiation" evidence=ISO] [GO:0045664 "regulation of
neuron differentiation" evidence=ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048536 "spleen development" evidence=ISO]
[GO:0048565 "digestive tract development" evidence=ISO] [GO:0048713
"regulation of oligodendrocyte differentiation" evidence=ISO]
[GO:0048730 "epidermis morphogenesis" evidence=ISO] [GO:0048754
"branching morphogenesis of an epithelial tube" evidence=ISO]
[GO:0048812 "neuron projection morphogenesis" evidence=ISO]
[GO:0050767 "regulation of neurogenesis" evidence=ISO] [GO:0051225
"spindle assembly" evidence=ISO] [GO:0051607 "defense response to
virus" evidence=ISO] [GO:0051726 "regulation of cell cycle"
evidence=ISO] [GO:0055013 "cardiac muscle cell development"
evidence=ISO] [GO:0060119 "inner ear receptor cell development"
evidence=ISO] [GO:0060253 "negative regulation of glial cell
proliferation" evidence=ISO] [GO:0060576 "intestinal epithelial
cell development" evidence=ISO] [GO:0070173 "regulation of enamel
mineralization" evidence=ISO] [GO:0071335 "hair follicle cell
proliferation" evidence=ISO] [GO:2000630 "positive regulation of
miRNA metabolic process" evidence=ISO] InterPro:IPR000999
InterPro:IPR001159 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
RGD:1309381 GO:GO:0030424 GO:GO:0030425 Gene3D:3.30.160.20
GO:GO:0030426 GO:GO:0003725 GO:GO:0005793 GO:GO:0010626
eggNOG:COG1111 GO:GO:0004525 GO:GO:0035196 Gene3D:1.10.1520.10
SUPFAM:SSF69065 HOGENOM:HOG000001567 OrthoDB:EOG4JDH5W
GO:GO:0031643 GO:GO:0014040 HOVERGEN:HBG092134 IPI:IPI00365891
EMBL:BC098796 UniGene:Rn.205881 STRING:Q4G034 PhosphoSite:Q4G034
UCSC:RGD:1309381 InParanoid:Q4G034 Genevestigator:Q4G034
Uniprot:Q4G034
Length = 401
Score = 386 (140.9 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 100/255 (39%), Positives = 139/255 (54%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGL 1212
+ E +NY F++ + L++A TH SY I CYQRLEFLGDA+LDYLIT +LY
Sbjct: 147 NFEKKINYIFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQH 206
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRIN----ITVDSFEKLSLGS 1268
SPG LTD+RSA VNN +A +VK+ HK+ S EL+ I+ ++ E + S
Sbjct: 207 SPGVLTDLRSALVNNTIFASLAVKYDYHKYFKAVSPELFHVIDDFVQFQLEKNEMQGMDS 266
Query: 1269 TFGW-------ESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETM 1321
E PKA+GDI ESLAGAI++DSG + EVV+Q P++ P+I +
Sbjct: 267 ELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDSGMSLEVVWQVYYPMMRPLIEKFSA 326
Query: 1322 RF--HPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKK 1379
PVREL E + + P GK VTVE+ G+ F+ + + AK
Sbjct: 327 NVPRSPVRELLE--MEPETAKFSPAERTYDGKVRVTVELVGKGK-FKG--VGRSYRIAKS 381
Query: 1380 VACKEVLKSLRASFP 1394
A + L+SL+A+ P
Sbjct: 382 AAARRALRSLKANQP 396
Score = 87 (35.7 bits), Expect = 1.9e-40, Sum P(2) = 1.9e-40
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 35 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 71
>TAIR|locus:504955425 [details] [associations]
symbol:RTL1 "RNAse II-like 1" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0004525
"ribonuclease III activity" evidence=IEA;ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0006396 "RNA processing"
evidence=IEA;ISS] InterPro:IPR000999 Pfam:PF00636 PROSITE:PS50142
SMART:SM00535 EMBL:CP002687 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 IPI:IPI00537607
RefSeq:NP_680697.4 UniGene:At.45352 ProteinModelPortal:F4JK37
SMR:F4JK37 PRIDE:F4JK37 EnsemblPlants:AT4G15417.1 GeneID:827212
KEGG:ath:AT4G15417 OMA:HRFLRHK PhylomeDB:F4JK37 Uniprot:F4JK37
Length = 264
Score = 326 (119.8 bits), Expect = 5.8e-28, P = 5.8e-28
Identities = 77/197 (39%), Positives = 119/197 (60%)
Query: 1146 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 1205
++L+ + LE +LNY F+D SLL++A T SY+ + Y+ LE LGD++L+ I +Y
Sbjct: 24 DQLMEIESLEKILNYKFKDKSLLLKAFTDASYV-DDKSESYELLELLGDSILNMGI-IYD 81
Query: 1206 YNK-YPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKL 1264
+ K YP +PG LT +R+ +V+ + A +V H L+ ++ H L ++I V++ EK
Sbjct: 82 FIKLYPKEAPGPLTKLRAVNVDTEKLARVAVNHQLYSYLRHKKPLLEEQILEFVEAMEKY 141
Query: 1265 SLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNR-EVVFQSIRPLLEPMITPETMRF 1323
L S + PK L DI+ES GAIF+D CN E V++ I+PLLEP+I + M+
Sbjct: 142 PLHSN----GLLKVPKVLADIVESTIGAIFMD--CNSTETVWKVIKPLLEPIIHLDKMKS 195
Query: 1324 HPVRELTEYCQKNHFSM 1340
HP+ EL E CQK + +
Sbjct: 196 HPMTELNEMCQKRNLKL 212
>DICTYBASE|DDB_G0289659 [details] [associations]
symbol:rrpA "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0289659
GO:GO:0005524 GenomeReviews:CM000154_GR GO:GO:0003676
EMBL:AAFI02000148 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_636093.1
ProteinModelPortal:Q54H25 EnsemblProtists:DDB0191515 GeneID:8627305
KEGG:ddi:DDB_G0289659 InParanoid:Q54H25 Uniprot:Q54H25
Length = 2417
Score = 334 (122.6 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 139/523 (26%), Positives = 240/523 (45%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIM-LLRSYAYLLRK----PSPXXXXXXXXX 77
R+YQ+E+ + + NT++ L TG GKTL++IM LL ++ + S
Sbjct: 285 RDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDR 344
Query: 78 XXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK-HEVLVMTPQILLDGLRL 136
AI+ T+LKV K +G++ D T SK ++VLV T L++ L +
Sbjct: 345 VPLVTQQAGAIEAITNLKVCKLYGEIN----DSRTRAFVRSKEYDVLVSTVGSLVNLLEV 400
Query: 137 SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVS 196
+ + + DE HHA G+H + ++ Y R +T + PRI G+TAS + +
Sbjct: 401 RHLNILDFYFITFDEVHHATGEHDFNKVVD--YIR--KTDLNYRPRILGLTASLVS--IG 454
Query: 197 SSEQDYWQK-IHDLETLMNSKVYTCAS---ESVLSNFIPFSTAKFKFYKYDE-IPHALYT 251
+S D Q+ I D+E M S+V+ S S S P FK + I ++
Sbjct: 455 NSTIDIVQRSIKDMEERMLSRVFKPTSLLTNSTQSELQP-ELVSFKTSGQESLIETSICE 513
Query: 252 HLADELAMIELKHTRSLENLDLNEAQAELIR--KKVSKINSTL--LYCLSELGVWLALKA 307
L +++ S +LD ++ +++ K + L +Y + V + L A
Sbjct: 514 FLVSNSKELQIFLNYSDVDLDGVRGNPSFLKALERLDKYSKQLESIY-IEYTKVLIELYA 572
Query: 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGL 367
++ E +LD ++ ++ + Y SG +D + N + G
Sbjct: 573 LLSVLSTEGPKQVLTRLDLLMQSTNQENELYNKLLELRYYISGQY----EDRESNFEKGS 628
Query: 368 LT-EKIVCLIESLLEYRG----VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYI 422
K++ +E + +D+R ++FVE A L S+L + P TK +
Sbjct: 629 TRYRKLISSLEYAISDASDGELQKDLRILVFVETRFGASNLTSMLKKE-PFQEYLHTKRL 687
Query: 423 AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482
G+N G+ +KQ I+ +FR G +IV T++LEEG+DVQ CN+VI +D ++ S
Sbjct: 688 VGHN-GVDGMDSEKQQSIIRKFRDGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSL 746
Query: 483 IQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
IQ RGRAR +N +++ + D ++ + L+S N + +
Sbjct: 747 IQRRGRARSKNESKFIIIYNDDKDL--KILDILSSENLLNNSI 787
Score = 50 (22.7 bits), Expect = 1.6e-24, Sum P(2) = 1.6e-24
Identities = 17/70 (24%), Positives = 36/70 (51%)
Query: 1056 ESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115
+ D ++I GD + L+ +L +G +IY+ K + S+ V +L+ + +
Sbjct: 1750 DQIDQLVYI--GDFLPNISLDKSNLVDGYEIYLNSAKILYSQYKLQV-HSLLRHYSAESE 1806
Query: 1116 ENVGLIFLDR 1125
E++ + FLD+
Sbjct: 1807 ESIMIGFLDQ 1816
Score = 39 (18.8 bits), Expect = 2.2e-23, Sum P(2) = 2.2e-23
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1190 EFLGDAVLDYLITVYLYNKYPGLSP--GYLTDMRSASV 1225
EF+GD + ++L Y Y K LS G T +R +
Sbjct: 1162 EFIGDCLKNFLPDPY-YAKKKDLSTKSGEFTMIRDVFI 1198
Score = 37 (18.1 bits), Expect = 3.6e-23, Sum P(2) = 3.6e-23
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1221 RSASVNNDCYALSSV 1235
+ A+V ND +ALSS+
Sbjct: 1645 KKANVFNDPFALSSM 1659
>TAIR|locus:2092409 [details] [associations]
symbol:RTL2 "RNAse THREE-like protein 2" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS;IMP]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0010267 "production of
ta-siRNAs involved in RNA interference" evidence=RCA] [GO:0035196
"production of miRNAs involved in gene silencing by miRNA"
evidence=RCA] [GO:0051607 "defense response to virus" evidence=RCA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0005737 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0016075
GO:GO:0006364 EMBL:AB024036 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 HSSP:O67082
EMBL:AY042815 EMBL:AY081681 IPI:IPI00517285 RefSeq:NP_566661.1
UniGene:At.8183 ProteinModelPortal:Q9LTQ0 SMR:Q9LTQ0 IntAct:Q9LTQ0
EnsemblPlants:AT3G20420.1 GeneID:821587 KEGG:ath:AT3G20420
TAIR:At3g20420 HOGENOM:HOG000237951 InParanoid:Q9LTQ0 OMA:ANISTEK
PhylomeDB:Q9LTQ0 ProtClustDB:CLSN2688595 Genevestigator:Q9LTQ0
Uniprot:Q9LTQ0
Length = 391
Score = 288 (106.4 bits), Expect = 6.5e-24, P = 6.5e-24
Identities = 77/253 (30%), Positives = 135/253 (53%)
Query: 1145 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVY 1204
+ + ++ +E +LNY F + SLL EA+TH S + P Y+RLEF+GD+ + I+ Y
Sbjct: 54 SSEMESMEAVEKILNYKFSNKSLLKEAITHTS--CTDFPS-YERLEFIGDSAIGLAISNY 110
Query: 1205 LYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKL 1264
LY YP L P L+ +R+A+V+ + A S+ HGL+ + + L +++ ++ K
Sbjct: 111 LYLTYPSLEPHDLSLLRAANVSTEKLARVSLNHGLYSFLRRNAPSLDEKVKEFSEAVGKE 170
Query: 1265 S-LGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRF 1323
L ++G + PK L D+ ESLAGA++VD + + ++ R LLEP++T + ++
Sbjct: 171 DDLSVSYG--GLVKAPKVLADLFESLAGAVYVDVNFDLQRLWVIFRGLLEPIVTLDDLQK 228
Query: 1324 HP--VRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVA 1381
P V L + C K+ + + + G ++ V + + L + +K A+ +A
Sbjct: 229 QPQPVSMLFKLCHKH--KKRIDIKNWKDGNVSIAV-IYLDDELLASGRAE-NKDIARLIA 284
Query: 1382 CKEVLKSLRASFP 1394
KE L+ L FP
Sbjct: 285 AKEALRKLSEVFP 297
>DICTYBASE|DDB_G0294407 [details] [associations]
symbol:helF "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0040029 "regulation of gene
expression, epigenetic" evidence=IMP] [GO:0031149 "sorocarp stalk
cell differentiation" evidence=IMP] [GO:0005634 "nucleus"
evidence=IDA] [GO:0003724 "RNA helicase activity" evidence=ISS]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0004386 "helicase
activity" evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] InterPro:IPR001159
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00035 Pfam:PF00270
Pfam:PF00271 PROSITE:PS51194 SMART:SM00358 SMART:SM00490
InterPro:IPR014720 dictyBase:DDB_G0294407 GO:GO:0005524
GO:GO:0005634 Gene3D:3.30.160.20 GenomeReviews:CM000151_GR
EMBL:AAFI02000008 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0040029 GO:GO:0008026 GO:GO:0003724
GO:GO:0031149 eggNOG:COG1111 RefSeq:XP_001134628.1
ProteinModelPortal:Q86L44 EnsemblProtists:DDB0233379 GeneID:8618629
KEGG:ddi:DDB_G0294407 OMA:ANIQSRG ProtClustDB:CLSZ2733552
Uniprot:Q86L44
Length = 837
Score = 305 (112.4 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 172/648 (26%), Positives = 277/648 (42%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQ E +++++ I L TG GKTLI+ ++++ L PS
Sbjct: 233 RDYQCELYRKSMEKDIICCLPTGLGKTLISCLVIKKMKQL--NPSKQIVFIVDRIPLVIQ 290
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH--EVLVMTPQILLDGLRLSYFK 140
+ I+ T LKV G+ T+K K +VLV+ L + L LS
Sbjct: 291 QS-DVIETETGLKVLSAHGE---------TFKPVQLKQRFDVLVVIGD-LFNKL-LSNGD 338
Query: 141 LNMIK--VLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSS 198
LN++ ++++DE HH +H +A ++ + + + E P+I G+TASP +
Sbjct: 339 LNILSFCLIVIDEAHHIVKEHSFAKLLRDKLNTIPEICH---PKILGLTASP------AG 389
Query: 199 EQDYWQKIHDLETLMNSKVYTCAS-ESVLSNFIPFSTAKFKFYKYDEIP-HALYTHLADE 256
++D++ + L+ + SKV C + + IP+ K K IP + L H
Sbjct: 390 KKDFFNTLLSLKLI--SKVSRCEIIKPTNQSIIPYINQKN--IKIIPIPTNNLERHSIQI 445
Query: 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAA---ETISC 313
L + K+ +L N N+ EL S I+S L L G ++ ++
Sbjct: 446 LKDLISKYKPNLSN---NQ---ELFDSVTSVIDSNTLKGLGVGGGGGGSNSSTQNHNLNK 499
Query: 314 YESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIV 373
+ S FF E+++ F K FGS L E S DD + + + +
Sbjct: 500 FLSSFF--EKINDFIN--FKMFGSAIPVGLNLKSFLIEEISNIDDVELQSEILAMVHSLP 555
Query: 374 C---LIESL---------LEYRGVEDIRCIIFVERVITAIVLQSLLSELL--PRHCTWKT 419
C + +S+ L+ + +D++ IIFV+ A + SLL +L R K
Sbjct: 556 CDEEIADSISKLEIALQILDEKKSDDLKAIIFVKTRDVAKKVYSLLDQLRMGDRFSFIKP 615
Query: 420 KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTV 479
+ G+ S I S Q + +EEFR NVIVATS++EEG DV CN+VI DP TV
Sbjct: 616 NLVVGHGS-IGGMSISSQKKAIEEFRSDQCNVIVATSVVEEGFDVPECNIVIRLDPPTTV 674
Query: 480 CSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV--LSHASLPCSPLN 537
+ IQSRGR R ++S + +VK D + E + + + + L LP S L
Sbjct: 675 TANIQSRGRLRNRDSYFYGIVKVDDPREDNIYEFFKNQERYLEEAINFLKTGELPIS-LK 733
Query: 538 NHMYGEDFYHV-ESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMG----IC 592
Y V E T + +S+ +L+ ++ + H G I
Sbjct: 734 QQNYTTQVNQVDEEMDTNSYFASASALVQEMVIQVKRHTFDFGIAWEHTPDGSGFFNAIA 793
Query: 593 TLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDI 640
T Y+ + N KT K+ CK + Q G L NL+ ++
Sbjct: 794 TFYINKEAAHSHFKSGQNKKTAKE----NTCKSILQSG-LIYNLIKNL 836
Score = 49 (22.3 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
Identities = 9/16 (56%), Positives = 13/16 (81%)
Query: 1373 DKKTAKKVACKEVLKS 1388
+KKTAK+ CK +L+S
Sbjct: 811 NKKTAKENTCKSILQS 826
>MGI|MGI:1918836 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016925 "protein
sumoylation" evidence=ISO] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISO] [GO:0032728 "positive
regulation of interferon-beta production" evidence=ISO] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0043021
"ribonucleoprotein complex binding" evidence=ISO] [GO:0045087
"innate immune response" evidence=IMP] [GO:0046872 "metal ion
binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194
SMART:SM00490 MGI:MGI:1918836 GO:GO:0005524 GO:GO:0005634
GO:GO:0005737 GO:GO:0042981 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925 GO:GO:0032727
eggNOG:COG1111 GeneTree:ENSGT00510000046789 GO:GO:0032728
HOVERGEN:HBG106019 CTD:64135 KO:K12647 OMA:KCGQAWG
OrthoDB:EOG48KR9P EMBL:AY075132 EMBL:AF374384 EMBL:AK018602
EMBL:AK037057 EMBL:AK040519 EMBL:AK153018 EMBL:AL929246
EMBL:BC004031 EMBL:BC019605 EMBL:BC025508 EMBL:BC080200
IPI:IPI00172284 IPI:IPI00555048 RefSeq:NP_001157949.1
RefSeq:NP_082111.2 UniGene:Mm.136224 PDB:3TS9 PDBsum:3TS9
ProteinModelPortal:Q8R5F7 SMR:Q8R5F7 STRING:Q8R5F7
PhosphoSite:Q8R5F7 PaxDb:Q8R5F7 PRIDE:Q8R5F7
Ensembl:ENSMUST00000028259 Ensembl:ENSMUST00000112459 GeneID:71586
KEGG:mmu:71586 UCSC:uc012bvy.1 InParanoid:A2AUY7 NextBio:334053
Bgee:Q8R5F7 CleanEx:MM_IFIH1 Genevestigator:Q8R5F7
GermOnline:ENSMUSG00000026896 Uniprot:Q8R5F7
Length = 1025
Score = 211 (79.3 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 48/149 (32%), Positives = 85/149 (57%)
Query: 370 EKIVCLIESLLEY--RGVEDIRCIIFVE-RVITAIVLQSLLSELLPRHCTWKTKYI--AG 424
EK++ L ++LE R E R IIF + R T + Q ++ K ++ AG
Sbjct: 699 EKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENAKFAEVGVKAHHLIGAG 758
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S ++ ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 759 HSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 818
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+RGRAR S Y+L+ SG T+ + N
Sbjct: 819 ARGRARADESTYVLVTSSGSGVTEREIVN 847
Score = 147 (56.8 bits), Expect = 1.7e-22, Sum P(2) = 1.7e-22
Identities = 58/226 (25%), Positives = 102/226 (45%)
Query: 11 TEEVSADTLPFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPX 69
T+ VS + R YQ+E + AL +N I+ L TGSGKT +A+ + + + L +K
Sbjct: 298 TKRVSPEPELQLRPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDH--LDKKKQAS 355
Query: 70 XXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGV--DFWDGATWKEEMSKHEVLVMTP 127
+ + + + K++ +G+ D ++ E + ++V++ T
Sbjct: 356 ESGKVIVLVNKVMLAEQLFRKEFNPYLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTA 415
Query: 128 QILLDGL-RLSY-----FKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD---S 178
QIL + L L +L+ ++I+DECHH + Y IM + + L D
Sbjct: 416 QILENSLLNLESGDDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLRNNDLKKQ 475
Query: 179 N-----LPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT 219
N LP+I G+TASP V ++++ + H L N +T
Sbjct: 476 NKPAIPLPQILGLTASP---GVGAAKKQSEAEKHILNICANLDAFT 518
>DICTYBASE|DDB_G0291249 [details] [associations]
symbol:rrpB "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR007855 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
Pfam:PF05183 PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0291249
GO:GO:0005524 EMBL:AAFI02000177 GenomeReviews:CM000155_GR
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 GO:GO:0003968 KO:K11699
PANTHER:PTHR23079 RefSeq:XP_635263.1 ProteinModelPortal:Q54EH7
EnsemblProtists:DDB0220017 GeneID:8628208 KEGG:ddi:DDB_G0291249
InParanoid:Q54EH7 OMA:NINERTN ProtClustDB:CLSZ2429575
Uniprot:Q54EH7
Length = 2403
Score = 206 (77.6 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 50/140 (35%), Positives = 79/140 (56%)
Query: 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR 445
+D+R ++FVE A L S+L + P TK + G+N G +KQ I+ +FR
Sbjct: 641 KDLRILVFVETRSGASNLTSMLKKE-PFQEYLHTKRLVGHN-GDDGMDSEKQQSIIRKFR 698
Query: 446 RGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDS 505
G +IV T++LEEG+DVQ CN+VI +D ++ S IQ RGRAR +N +++ + D
Sbjct: 699 DGKCRLIVTTNVLEEGIDVQDCNIVICYDGILSLKSLIQRRGRARSKNESKFIIIYNDDK 758
Query: 506 TTQSRLENYLASGNKMRKEV 525
++ N L+S N + +
Sbjct: 759 DL--KILNILSSENLLNNSI 776
Score = 174 (66.3 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 67/214 (31%), Positives = 107/214 (50%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIM-LLRSYAYLLRK----PSPXXXXXXXXX 77
R+YQ+E+ + + NT++ L TG GKTL++IM LL ++ + S
Sbjct: 274 RDYQIESYYQSTQDNTLLVLPTGMGKTLVSIMTLLEMFSINDQDNSCGDSKRIALFLVDR 333
Query: 78 XXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK-HEVLVMTPQILLDGLRL 136
AI+ T+LKV K +G++ D T SK ++VLV T L++ L +
Sbjct: 334 VPLVTQQAGAIEAITNLKVCKLYGEIN----DSRTRAFVRSKEYDVLVSTVGSLVNLLEV 389
Query: 137 SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL-PRIFGMTASPIKSKV 195
+ + + DE HHA G+H + ++ Y R +T D N PRI G+TAS + +
Sbjct: 390 RHLNILDFYFITFDEVHHATGEHDFNKVVD--YIR--KT-DLNFRPRILGLTASLVS--I 442
Query: 196 SSSEQDYWQK-IHDLETLMNSKVYTCASESVLSN 228
+S D Q+ I D+E M S+V+ S+L+N
Sbjct: 443 GNSTIDIVQRSIKDMEERMLSRVFK--PTSLLTN 474
Score = 40 (19.1 bits), Expect = 1.2e-08, Sum P(3) = 1.2e-08
Identities = 16/55 (29%), Positives = 24/55 (43%)
Query: 205 KIHDLET--LMNSKVYTCASESV--LSNFIP---FSTAKFKFYKYDEIPHALYTH 252
+I+D T + SK Y +V L N + + F F +DE+ HA H
Sbjct: 358 EINDSRTRAFVRSKEYDVLVSTVGSLVNLLEVRHLNILDFYFITFDEVHHATGEH 412
Score = 39 (18.8 bits), Expect = 2.7e-22, Sum P(3) = 2.7e-22
Identities = 13/38 (34%), Positives = 19/38 (50%)
Query: 1190 EFLGDAVLDYLITVYLYNKYPGLSP--GYLTDMRSASV 1225
EF+GD + ++L Y Y K LS G T +R +
Sbjct: 1177 EFIGDCLKNFLPDPY-YAKKKDLSTKSGEFTMIRDVFI 1213
Score = 37 (18.1 bits), Expect = 4.3e-22, Sum P(3) = 4.3e-22
Identities = 8/15 (53%), Positives = 12/15 (80%)
Query: 1221 RSASVNNDCYALSSV 1235
+ A+V ND +ALSS+
Sbjct: 1659 KKANVFNDPFALSSM 1673
>RGD|1310093 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA;ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0032480
"negative regulation of type I interferon production"
evidence=IEA;ISO] [GO:0032481 "positive regulation of type I
interferon production" evidence=IEA;ISO] [GO:0039534 "negative
regulation of MDA-5 signaling pathway" evidence=IEA;ISO]
[GO:0039536 "negative regulation of RIG-I signaling pathway"
evidence=IEA;ISO] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=IEA;ISO] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA;ISO] [GO:1900246 "positive
regulation of RIG-I signaling pathway" evidence=IEA;ISO]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1310093 GO:GO:0005524 GO:GO:0005737 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0051607 GO:GO:0003725
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0032480 GO:GO:0039534 GO:GO:0039536 GO:GO:0045824
GeneTree:ENSGT00510000046789 GO:GO:1900245 GO:GO:1900246 CTD:79132
KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15 GO:GO:0032481
IPI:IPI00371058 RefSeq:NP_001092258.1 UniGene:Rn.105654
Ensembl:ENSRNOT00000024718 GeneID:303538 KEGG:rno:303538
UCSC:RGD:1310093 NextBio:651548 Uniprot:D3ZD46
Length = 678
Score = 289 (106.8 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 136/519 (26%), Positives = 221/519 (42%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRH---LETVDRGKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-- 137
E + D + V GDMG G + H++L+ T ++L L+ S
Sbjct: 61 NQHAEEFRRMLDKQWTVTTLSGDMGSRAGFGLLARS----HDLLICTAELLHLALKSSEE 116
Query: 138 --YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK--- 192
+ +L ++++DECHH Y I++ + L+ LP++ G+TASP
Sbjct: 117 DEHVELTEFSLIVVDECHHTHKDTIYNTILSRYLEHKLKKAKP-LPQVLGLTASPGTGGA 175
Query: 193 SKVSSSEQDYWQKIHDLET--LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250
+K+ + Q +L+T +M+ K C S+ + N P +YD
Sbjct: 176 TKLQGAIDHILQLCANLDTWRIMSPK--NCYSQLLEHNPKPCK-------QYDLCQRRTQ 226
Query: 251 THLADELAMIELKHTRSLENLDLNEA-QAELIRKKVSKINSTLLYC-LSELGVW-LALKA 307
D L + + + LE DL + ++ ++V +++ L E V+ L L+
Sbjct: 227 DPFGDLLKKLMKQIHQQLEMPDLKQQFGTQMYEQQVVQLSKDAAEAGLQEQRVYALHLRR 286
Query: 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEW--SIGDDSKFNLDS 365
AW+ L+ +++ F D +AL T + W + DD + L
Sbjct: 287 YNDALYIHDTVRAWDALN-----MLQDF-YDTERALKTQMVHAERWLLELFDDHRKALAQ 340
Query: 366 ----GLLTEKIVCLIESLLEYRGVED-IRCIIFVERVITAIVLQSLLSELLPRHCTW--- 417
G K+ L LL+ G D R IIF TA SLL L + C
Sbjct: 341 FAAQGPENPKLEMLEGILLKQFGSPDHTRGIIFTRTRQTA---SSLLLWLRQQPCLQTVN 397
Query: 418 -KTKYI--AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
K + + AGN ++K Q E+++EFR G +N++VATS+ EEGLD+ CN+V+ +
Sbjct: 398 IKPQMLIGAGNTGQSTHMTQKDQQEVIQEFRDGKLNLLVATSVAEEGLDIAQCNVVVRYG 457
Query: 475 PSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
S +Q+RGRAR S Y + G + L N
Sbjct: 458 LLTNEISMVQARGRARAGQSVYSFVATEGSREIKRELTN 496
Score = 49 (22.3 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 13/36 (36%), Positives = 22/36 (61%)
Query: 812 NCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNGQI 847
NC ++ ++++ KS L KI + L+ TPH G+I
Sbjct: 614 NCGEVWGFQMIY-KSVTLPVLKIRSMLLETPH-GKI 647
>UNIPROTKB|D4AC08 [details] [associations]
symbol:Ifih1 "Protein Ifih1" species:10116 "Rattus
norvegicus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 RGD:1560496 GO:GO:0005524 GO:GO:0042981 GO:GO:0003677
GO:GO:0005622 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 IPI:IPI00568713
Ensembl:ENSRNOT00000040263 ArrayExpress:D4AC08 Uniprot:D4AC08
Length = 978
Score = 209 (78.6 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 48/149 (32%), Positives = 85/149 (57%)
Query: 370 EKIVCLIESLLEY--RGVEDIRCIIFVE-RVITAIVLQSLLSELLPRHCTWKTKYI--AG 424
EK++ L ++LE R E R IIF + R T + Q ++ K ++ AG
Sbjct: 652 EKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGAG 711
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S ++ ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 712 HSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 771
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+RGRAR S Y+L+ SG T+ + N
Sbjct: 772 ARGRARADESTYVLVTSSGSGVTEREIVN 800
Score = 137 (53.3 bits), Expect = 2.6e-21, Sum P(2) = 2.6e-21
Identities = 54/214 (25%), Positives = 98/214 (45%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ+E + AL +N I+ L TGSGKT +A+ + + + L +K
Sbjct: 262 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDH--LDKKKQACESGKVIVLVNKV 319
Query: 82 XXXXEAIKMHTDLKVGKYWGDMGV--DFWDGATWKEEMSKHEVLVMTPQILLDGL-RLSY 138
+ + + + K++ +G+ D ++ E + ++V++ T QIL + L L
Sbjct: 320 MLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLES 379
Query: 139 -----FKLNMIKVLILDECHHARGKHQYACIMTEFY------HRLLETGDS--NLPRIFG 185
+L+ ++I+DECHH + Y IM + H+L + +LP+I G
Sbjct: 380 GEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILG 439
Query: 186 MTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT 219
+TASP V ++++ + H L N +T
Sbjct: 440 LTASP---GVGAAKKQSEAEKHILNICANLDAFT 470
>RGD|1560496 [details] [associations]
symbol:Ifih1 "interferon induced with helicase C domain 1"
species:10116 "Rattus norvegicus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO] [GO:0003727 "single-stranded RNA binding"
evidence=IEA;ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA;ISO] [GO:0008270 "zinc ion binding" evidence=IEA;ISO]
[GO:0009615 "response to virus" evidence=IEA;ISO] [GO:0016925
"protein sumoylation" evidence=IEA;ISO] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=ISO]
[GO:0032728 "positive regulation of interferon-beta production"
evidence=ISO] [GO:0042981 "regulation of apoptotic process"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA;ISO] [GO:0045087 "innate immune response"
evidence=IEA;ISO] InterPro:IPR001315 InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619
Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 RGD:1560496
GO:GO:0005524 GO:GO:0042981 GO:GO:0003677 GO:GO:0005622
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 EMBL:CH473949
GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647 OMA:KCGQAWG
RefSeq:NP_001102669.1 UniGene:Rn.151974 Ensembl:ENSRNOT00000009620
GeneID:499801 KEGG:rno:499801 NextBio:704049 Uniprot:G3V6W5
Length = 1027
Score = 209 (78.6 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 48/149 (32%), Positives = 85/149 (57%)
Query: 370 EKIVCLIESLLEY--RGVEDIRCIIFVE-RVITAIVLQSLLSELLPRHCTWKTKYI--AG 424
EK++ L ++LE R E R IIF + R T + Q ++ K ++ AG
Sbjct: 701 EKLIKLRNTILEQFTRSEESSRGIIFTKTRQSTYALSQWIMENEKFAEVGVKAHHLIGAG 760
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S ++ ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 761 HSSEVKPMTQTEQKEVISKFRTGEINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 820
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+RGRAR S Y+L+ SG T+ + N
Sbjct: 821 ARGRARADESTYVLVTSSGSGVTEREIVN 849
Score = 137 (53.3 bits), Expect = 3.0e-21, Sum P(2) = 3.0e-21
Identities = 54/214 (25%), Positives = 98/214 (45%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ+E + AL +N I+ L TGSGKT +A+ + + + L +K
Sbjct: 311 RPYQMEVAQPALDGKNIIICLPTGSGKTRVAVYITKDH--LDKKKQACESGKVIVLVNKV 368
Query: 82 XXXXEAIKMHTDLKVGKYWGDMGV--DFWDGATWKEEMSKHEVLVMTPQILLDGL-RLSY 138
+ + + + K++ +G+ D ++ E + ++V++ T QIL + L L
Sbjct: 369 MLAEQLFRKEFNPFLKKWYRIIGLSGDTQLKISFPEVVKSYDVIISTAQILENSLLNLES 428
Query: 139 -----FKLNMIKVLILDECHHARGKHQYACIMTEFY------HRLLETGDS--NLPRIFG 185
+L+ ++I+DECHH + Y IM + H+L + +LP+I G
Sbjct: 429 GEDDGVQLSDFSLIIIDECHHTNKEAVYNNIMRRYLKQKLKNHKLKKQNKPTIHLPQILG 488
Query: 186 MTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT 219
+TASP V ++++ + H L N +T
Sbjct: 489 LTASP---GVGAAKKQSEAEKHILNICANLDAFT 519
>UNIPROTKB|E2RNK0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0045087 "innate immune response"
evidence=IEA] [GO:0043021 "ribonucleoprotein complex binding"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0009615 "response to virus" evidence=IEA] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0042981
"regulation of apoptotic process" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001315 InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF00619 Pfam:PF04851
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490
GO:GO:0005524 GO:GO:0005737 GO:GO:0042981 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986
GO:GO:0043021 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0016925 GeneTree:ENSGT00510000046789 CTD:64135 KO:K12647
OMA:KCGQAWG EMBL:AAEX03017717 RefSeq:XP_545493.2
Ensembl:ENSCAFT00000016597 GeneID:488371 KEGG:cfa:488371
Uniprot:E2RNK0
Length = 1029
Score = 197 (74.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 48/164 (29%), Positives = 87/164 (53%)
Query: 370 EKIVCLIESLLEY--RGVEDIRCIIFVERVITAIVLQSLLSELLP-RHCTWKTKYI--AG 424
EK++ L +++E R E R IIF + +A L ++E K ++ AG
Sbjct: 702 EKLIKLRNTIMEQFTRTEEPARGIIFTKTRQSAFALSQWITENKKFAEVGVKAHHLIGAG 761
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S + ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 762 HSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 821
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSH 528
+RGRAR S Y+L+ S + + N KM + + H
Sbjct: 822 ARGRARADESTYVLVAHSNSGVIEREIVNDFRE--KMMYKAIDH 863
Score = 137 (53.3 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 57/221 (25%), Positives = 99/221 (44%)
Query: 5 SMESDTTEEVSADTLPFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLL 63
S E + E S + R YQ+E + AL+ +N I+ L TGSGKT +A+ + + +
Sbjct: 292 SDEENVAERASPEPELHLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDKK 351
Query: 64 RKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGV--DFWDGATWKEEMSKHE 121
+K S + LK K++ +G+ D ++ E + ++
Sbjct: 352 KKASEPGKVIVLVNKVPLVEQLFREEFEPFLK--KWYHTIGLSGDTQLKISFPEIVKTYD 409
Query: 122 VLVMTPQILLDGLRLSY------FKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175
V++ T QIL + L S + + ++I+DECHH + Y IM + + L+
Sbjct: 410 VIISTAQILENSLLNSEKGEDDGVQFSDFTLIIIDECHHTNKEAVYNNIMRRYLKQKLKN 469
Query: 176 GDSN--------LPRIFGMTASP-IK-SKVSSSEQDYWQKI 206
LP+I G+TASP ++ +K + Q + KI
Sbjct: 470 NKLKKEYKPVIPLPQILGLTASPGVRGAKRQAEAQQHILKI 510
>UNIPROTKB|E1BJZ0 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045087 "innate immune response" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0016925 "protein sumoylation" evidence=IEA] [GO:0009615
"response to virus" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0042981 "regulation
of apoptotic process" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005737 GO:GO:0042981
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0045087
GO:GO:0009615 GO:GO:0004386 Gene3D:1.10.533.10 InterPro:IPR011029
SUPFAM:SSF47986 GO:GO:0043021 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0016925 GeneTree:ENSGT00510000046789
CTD:64135 KO:K12647 OMA:KCGQAWG EMBL:DAAA02004416 IPI:IPI00702873
RefSeq:XP_002685384.1 RefSeq:XP_615590.2 UniGene:Bt.24098
Ensembl:ENSBTAT00000010703 GeneID:535490 KEGG:bta:535490
NextBio:20876765 Uniprot:E1BJZ0
Length = 1021
Score = 194 (73.4 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 46/149 (30%), Positives = 83/149 (55%)
Query: 370 EKIVCLIESLLE-YRGVE-DIRCIIFVERVITAIVL-QSLLSELLPRHCTWKTKYI--AG 424
EK++ L +++E Y E R IIF + +A L Q ++ K ++ AG
Sbjct: 694 EKLIKLRNTIMEQYSRTEGSARGIIFTKTRQSAYALSQWIIENEKFSEVGVKAHHLIGAG 753
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S + ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 754 HSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 813
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+RGRAR S Y+L+ +SG + N
Sbjct: 814 ARGRARADESTYVLVAQSGSGVVERETVN 842
Score = 140 (54.3 bits), Expect = 5.8e-20, Sum P(2) = 5.8e-20
Identities = 53/183 (28%), Positives = 82/183 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQLE + AL+ +N I+ L TGSGKT +A+ + + + +K S
Sbjct: 308 RPYQLEVAQPALEGKNIIICLPTGSGKTRVAVYIAKDHLDK-KKASEHGKVMVLVNKVPL 366
Query: 82 XXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--- 138
+ LK + + D T+ E + H+V++ T QIL + L S
Sbjct: 367 VEQLFRKEFKPFLKKWYHVTRLSGDTQLKITFPEVVKSHDVIISTAQILENSLLNSEEGE 426
Query: 139 ---FKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD---SN-----LPRIFGMT 187
+L+ ++I+DECHH + Y IM F + L+ N LP+I G+T
Sbjct: 427 DDGIELSDFSLIIIDECHHTNKEAVYNNIMRRFLKQKLKNNKLKKENKPVIPLPQIVGLT 486
Query: 188 ASP 190
ASP
Sbjct: 487 ASP 489
Score = 41 (19.5 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 13/44 (29%), Positives = 23/44 (52%)
Query: 259 MIELKHTRSLENLDLNEAQAELIRK-KVSKINSTLLYCLSELGV 301
+I H+ + + NE Q E+I K + KIN + ++E G+
Sbjct: 749 LIGAGHSSEFKPMTQNE-QKEVISKFRTGKINLLIATTVAEEGL 791
Score = 40 (19.1 bits), Expect = 1.4e-09, Sum P(2) = 1.4e-09
Identities = 9/28 (32%), Positives = 16/28 (57%)
Query: 104 GVDFWDGATWKEEMSKHEVLVMTPQILL 131
G D +G+T E +S+ + L + +LL
Sbjct: 200 GTDCCEGSTESENLSQEDGLEVKEPLLL 227
>MGI|MGI:1931560 [details] [associations]
symbol:Dhx58 "DEXH (Asp-Glu-X-His) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=ISO;IDA] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008270 "zinc ion binding" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0032480 "negative
regulation of type I interferon production" evidence=ISO;IMP]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IMP] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=ISO] [GO:0039536 "negative regulation of RIG-I
signaling pathway" evidence=ISO;IMP] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0045088 "regulation of innate immune
response" evidence=ISO] [GO:0045824 "negative regulation of innate
immune response" evidence=ISO;IMP] [GO:0046872 "metal ion binding"
evidence=IEA] [GO:0051607 "defense response to virus" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IMP] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IMP] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 MGI:MGI:1931560 GO:GO:0005524
GO:GO:0005737 GO:GO:0046872 GO:GO:0003677 GO:GO:0008270
GO:GO:0003727 GO:GO:0045087 GO:GO:0051607 GO:GO:0009615
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 eggNOG:COG1111 GeneTree:ENSGT00510000046789
GO:GO:1900245 GO:GO:1900246 CTD:79132 HOGENOM:HOG000230992
HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW OrthoDB:EOG44QT15
GO:GO:0032481 EMBL:AF316999 EMBL:AF317000 EMBL:AL591469
EMBL:BC029209 IPI:IPI00319899 RefSeq:NP_084426.2 UniGene:Mm.271830
ProteinModelPortal:Q99J87 SMR:Q99J87 STRING:Q99J87
PhosphoSite:Q99J87 PaxDb:Q99J87 PRIDE:Q99J87
Ensembl:ENSMUST00000017974 GeneID:80861 KEGG:mmu:80861
InParanoid:A2A5E9 NextBio:350167 Bgee:Q99J87 CleanEx:MM_DHX58
Genevestigator:Q99J87 GermOnline:ENSMUSG00000017830 Uniprot:Q99J87
Length = 678
Score = 274 (101.5 bits), Expect = 6.2e-20, P = 6.2e-20
Identities = 131/519 (25%), Positives = 219/519 (42%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RPYQWEVILPALEGKNIIIWLPTGAGKTRAAAFVAKRH---LETVDRGKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLKVGKYWG--DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-- 137
E + D K+W + D A + H++L+ T ++L L S
Sbjct: 61 SQHAEEFRRMLD----KHWTVTTLSGDMGSRAGFGLMARSHDLLICTAELLQLALNSSEE 116
Query: 138 --YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK--- 192
+ +L ++++DECHH Y I++ + + L+ + LP++ G+TASP
Sbjct: 117 DEHVELREFSLIVVDECHHTHKDTVYNTILSRYLEQKLKKAEP-LPQVLGLTASPGTGGA 175
Query: 193 SKVSSSEQDYWQKIHDLET--LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250
+K+ + Q +L+T +M+ K C S+ ++ N P +YD
Sbjct: 176 TKLQGAIDHILQLCANLDTCHIMSPK--NCYSQLLMHNPKPCK-------QYDLCQRRAQ 226
Query: 251 THLADELAMIELKHTRSLENLDLNEA-QAELIRKKVSKINSTLLYC-LSELGVW-LALKA 307
D + + + + LE DL + ++ ++V ++ L E V+ L L+
Sbjct: 227 DPFGDLIKKLMNQIHQQLEMPDLKQQFGTQMYEQQVVQLCKDAAEAGLQEQRVYALHLRR 286
Query: 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEW--SIGDDSKFNLDS 365
A + LD +++ F D + T + W + DD K L
Sbjct: 287 YNDALFIHDTVRARDALD-----MLQDF-YDRERTTKTQMVRAESWLLKLFDDHKNVLGQ 340
Query: 366 ----GLLTEKIVCLIESLLEYRGVED-IRCIIFVERVITAIVLQSLLSELLPRHCTW--- 417
G K+ L LL+ G R IIF TA SLL L + C
Sbjct: 341 LAARGPENPKLEMLERILLKQFGSPGHTRGIIFTRTRQTA---SSLLLWLRQQPCLQTVG 397
Query: 418 -KTKYI--AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474
K + + AGN S ++K Q E+++EFR G+++++VATS+ EEGLD+ CN+V+ +
Sbjct: 398 IKPQMLIGAGNTSQSTHMTQKDQQEVIQEFRDGILSLLVATSVAEEGLDIAQCNVVVRYG 457
Query: 475 PSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
S +Q+RGRAR S Y + G + L N
Sbjct: 458 LLTNEISMVQARGRARAGQSVYSFLATEGSREMKRELTN 496
>UNIPROTKB|Q9BYX4 [details] [associations]
symbol:IFIH1 "Interferon-induced helicase C
domain-containing protein 1" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0042981 "regulation of
apoptotic process" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0019048
"virus-host interaction" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0016925 "protein
sumoylation" evidence=IDA] [GO:0039528 "cytoplasmic pattern
recognition receptor signaling pathway in response to virus"
evidence=TAS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IMP;TAS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=IMP;TAS] [GO:0003725
"double-stranded RNA binding" evidence=IDA;TAS] [GO:0003727
"single-stranded RNA binding" evidence=IDA] [GO:0034344 "regulation
of type III interferon production" evidence=TAS] [GO:0009615
"response to virus" evidence=TAS] [GO:0045087 "innate immune
response" evidence=TAS] [GO:0005829 "cytosol" evidence=TAS]
[GO:0032480 "negative regulation of type I interferon production"
evidence=TAS] [GO:0009597 "detection of virus" evidence=TAS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001315
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF00619 Pfam:PF04851 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005829 GO:GO:0005524
GO:GO:0005634 Reactome:REACT_6900 GO:GO:0019048 GO:GO:0042981
GO:GO:0046872 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 Reactome:REACT_107772 GO:GO:0003725 GO:GO:0004386
Gene3D:1.10.533.10 InterPro:IPR011029 SUPFAM:SSF47986 GO:GO:0043021
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0016925 GO:GO:0032727 eggNOG:COG1111 GO:GO:0032728
GO:GO:0009597 GO:GO:0034344 HOGENOM:HOG000230992 HOVERGEN:HBG106019
EMBL:AF095844 EMBL:AY017378 EMBL:BC046208 EMBL:BC078180
EMBL:BC111750 EMBL:AK056293 IPI:IPI00005577 IPI:IPI00556546
RefSeq:NP_071451.2 UniGene:Hs.163173 PDB:2RQB PDB:3B6E PDB:3GA3
PDB:4GL2 PDBsum:2RQB PDBsum:3B6E PDBsum:3GA3 PDBsum:4GL2
ProteinModelPortal:Q9BYX4 SMR:Q9BYX4 DIP:DIP-42607N IntAct:Q9BYX4
MINT:MINT-3381993 STRING:Q9BYX4 PhosphoSite:Q9BYX4 DMDM:134047802
PaxDb:Q9BYX4 PRIDE:Q9BYX4 Ensembl:ENST00000263642
Ensembl:ENST00000421365 Ensembl:ENST00000543192 GeneID:64135
KEGG:hsa:64135 UCSC:uc002uce.3 UCSC:uc002ucf.3 CTD:64135
GeneCards:GC02M163123 HGNC:HGNC:18873 HPA:HPA002656 MIM:606951
MIM:610155 neXtProt:NX_Q9BYX4 PharmGKB:PA134889215
InParanoid:Q9BYX4 KO:K12647 OMA:KCGQAWG OrthoDB:EOG48KR9P
PhylomeDB:Q9BYX4 ChiTaRS:IFIH1 EvolutionaryTrace:Q9BYX4
GenomeRNAi:64135 NextBio:66034 ArrayExpress:Q9BYX4 Bgee:Q9BYX4
CleanEx:HS_IFIH1 Genevestigator:Q9BYX4 GermOnline:ENSG00000115267
GO:GO:0039528 Uniprot:Q9BYX4
Length = 1025
Score = 194 (73.4 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 47/149 (31%), Positives = 82/149 (55%)
Query: 370 EKIVCLIESLLE-Y-RGVEDIRCIIFVERVITAIVLQSLLSELLP-RHCTWKTKYI--AG 424
EK+ L +++E Y R E R IIF + +A L ++E K ++ AG
Sbjct: 699 EKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAG 758
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
++S + ++ +Q E++ +FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 759 HSSEFKPMTQNEQKEVISKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 818
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+RGRAR S Y+L+ SG + N
Sbjct: 819 ARGRARADESTYVLVAHSGSGVIEHETVN 847
Score = 134 (52.2 bits), Expect = 2.5e-19, Sum P(2) = 2.5e-19
Identities = 58/208 (27%), Positives = 96/208 (46%)
Query: 5 SMESDTTEE-VSADTLPFA----RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRS 58
+M SD+ EE V+A P R YQ+E + AL+ +N I+ L TGSGKT +A+ + +
Sbjct: 286 TMGSDSDEENVAARASPEPELQLRPYQMEVAQPALEGKNIIICLPTGSGKTRVAVYIAKD 345
Query: 59 YAYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGV--DFWDGATWKEE 116
+ +K S + LK K++ +G+ D ++ E
Sbjct: 346 HLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFLK--KWYRVIGLSGDTQLKISFPEV 403
Query: 117 MSKHEVLVMTPQILLDGL-RLSY-----FKLNMIKVLILDECHHARGKHQYACIMTEFYH 170
+ ++++ T QIL + L L +L+ ++I+DECHH + Y IM +
Sbjct: 404 VKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNIMRHYLM 463
Query: 171 RLLETG---DSN-----LPRIFGMTASP 190
+ L+ N LP+I G+TASP
Sbjct: 464 QKLKNNRLKKENKPVIPLPQILGLTASP 491
>DICTYBASE|DDB_G0280963 [details] [associations]
symbol:rrpC "RNA-directed RNA polymerase"
species:44689 "Dictyostelium discoideum" [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003968 "RNA-directed RNA polymerase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR002464 InterPro:IPR007855 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 Pfam:PF05183 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0280963 GO:GO:0005524
GenomeReviews:CM000152_GR EMBL:AAFI02000040 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
eggNOG:COG1111 GO:GO:0003968 PANTHER:PTHR23079
ProtClustDB:CLSZ2429575 RefSeq:XP_640790.1
ProteinModelPortal:Q54UI6 STRING:Q54UI6 EnsemblProtists:DDB0216193
GeneID:8622843 KEGG:ddi:DDB_G0280963 InParanoid:Q54UI6 OMA:YELFNDY
Uniprot:Q54UI6
Length = 2285
Score = 289 (106.8 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 147/566 (25%), Positives = 245/566 (43%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ +A + +NTI+ L TG+GKTL++I+ L+ + +K +
Sbjct: 21 RQYQEDAFNQCISRNTILVLPTGTGKTLVSILTFLKMFEINEKKNNDKVALFLVNNILLG 80
Query: 82 XXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL 141
E IK TD +V GD D +++ + ++++V TPQIL++ + + ++
Sbjct: 81 KQQTETIKNLTDKRVMVLSGD---DL----SFQTKKKNYDIVVATPQILMNLINKNKIRI 133
Query: 142 NMIKVLILDECHHARGKHQYACIMT-------EFYHRLLETGDSNLPRIFGMTASPIKSK 194
+ +I DE H+A G Y IM+ F R+L S L T ++
Sbjct: 134 DNFHFIIFDEVHNATGLDNYCKIMSLVKNLDPPFRPRILGLTASVLKNASNYTTERATNE 193
Query: 195 VSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254
+ E KI+ + K + + F+ Y+ P T L
Sbjct: 194 IKKLEDIMLSKIY-CPLIEIFKDQQQQQQQQQQQHHHHQSPNFEIYE----PSIQQTKLT 248
Query: 255 DELAMIELKHTRSLE----NLDLNEAQAEL-IRKKVSKINS-----TLLYCLSELGVWLA 304
++ + + TR L + D+ Q EL I K + ++S T SE +
Sbjct: 249 SIISKLIIDKTRYLSKKNGHKDVKLEQIELPILKFIQSLSSLKPKLTSERDSSEYATIVN 308
Query: 305 L-KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNL 363
L + T+S DGF II + D E ++ K +
Sbjct: 309 LCNSLTTLSIEGPQQCLTSITDGFVNGIIYQQLIDYDSEENQQQQEEEE----EEEKEDE 364
Query: 364 DSGL--LTEKIVCLIESL-LEYR--GVED-IRCIIFVERVITAIVLQSLL-SELLPRHCT 416
D G+ T K L++ L +E + + D I CI+FVE T L +LL SE
Sbjct: 365 DDGIEMKTNKFKSLLKLLSIEIKENNINDKINCIVFVETRDTGKKLLNLLISE--KEISK 422
Query: 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS 476
K I G+N G +Q +I+++F+ G+ V+V+T++LEEG+D++ CN VI FD
Sbjct: 423 LNPKLIYGHN-GRNGMKHSEQQQIIQQFKEGVCQVLVSTNVLEEGIDIKECNSVICFDNL 481
Query: 477 RTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPL 536
++ S IQ RGR R +S L++ + + RLE+ + S E++ + SL +
Sbjct: 482 YSLKSLIQRRGRDRTCSSFTLIL----EQDQRLRLEDLIKS------EIIINRSL-IDIM 530
Query: 537 NNHMYGEDFYHVESTGTIATLSSSVS 562
+ M ++ ST + +T SSS S
Sbjct: 531 TDRMRQKEL----STSSSSTSSSSSS 552
Score = 55 (24.4 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 23/80 (28%), Positives = 39/80 (48%)
Query: 648 QKRGNE---PYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMR 704
+K+GNE PY ++ + V+ + +DT I + I L + F Y I+ + + A+
Sbjct: 680 EKKGNEFHEPYLSKFLLLNIK--VDSTEKDTLINK--FTIYLSKRFGYWINYSHYIDAIE 735
Query: 705 TELESEIKKVNFDLEVERGR 724
+ E EI F+L E R
Sbjct: 736 LDNEQEINNT-FELVKETSR 754
Score = 53 (23.7 bits), Expect = 5.6e-19, Sum P(3) = 5.6e-19
Identities = 13/47 (27%), Positives = 26/47 (55%)
Query: 676 KITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEVER 722
K+ YH +L E ++ N + + N + ++ E E E+ N+ E+E+
Sbjct: 1758 KLFYHNFLNEFRKKSNNNNNNNNNLSMLQIEEEEELINENYT-EIEK 1803
Score = 48 (22.0 bits), Expect = 4.8e-17, Sum P(4) = 4.8e-17
Identities = 18/87 (20%), Positives = 36/87 (41%)
Query: 658 EHPIYFPPELVNQSPQDTKITYHCYLIELKQ----HFNYDISARNIVLAMRTELESE--- 710
++ +Y PP L+ +Y Y + ++ YD ++ E+E++
Sbjct: 820 QYCLYTPPTLIRTGSSKLTNSYDFYFLVIRPITLVRVKYDCKSKR-TFTDEIEIENKNFG 878
Query: 711 ---IKKVNFDLEVER-GRLTVNLKHLG 733
+ K +L E+ RL LK++G
Sbjct: 879 RSFVYKFTINLNFEKVNRLLSQLKYIG 905
Score = 46 (21.3 bits), Expect = 2.9e-18, Sum P(3) = 2.9e-18
Identities = 18/79 (22%), Positives = 32/79 (40%)
Query: 643 EKHDAQKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELKQHFNYDISAR--NIV 700
++ Q++ E + E P + P + +I L+ LK+ S I+
Sbjct: 1922 QQQQQQQQQQEEEDVEQS-NIPSFYLYLQPLENEIENEKLLLVLKEKLESSFSNNLFEII 1980
Query: 701 LAMRTELESEIKKVNFDLE 719
T LE E KK+ F ++
Sbjct: 1981 KITSTILEFEFKKIKFIID 1999
Score = 42 (19.8 bits), Expect = 3.5e-19, Sum P(3) = 3.5e-19
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 837 SLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTT 872
SL T H + + ++ H+ SL +N + TT
Sbjct: 2012 SLYITKHPSLVPTLLVIIEHIKNISLLLNSNKNTTT 2047
Score = 41 (19.5 bits), Expect = 2.4e-16, Sum P(4) = 2.4e-16
Identities = 10/32 (31%), Positives = 15/32 (46%)
Query: 804 DNGSKHNMNCSTMFNA-RIVHTKSGPLCTCKI 834
D+ S +N N + + K+GPL C I
Sbjct: 648 DSDSDNNSNSDNNSDRDEAIKLKNGPLVICSI 679
Score = 40 (19.1 bits), Expect = 9.4e-18, Sum P(4) = 9.4e-18
Identities = 11/53 (20%), Positives = 30/53 (56%)
Query: 978 TIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQN-NHEGLLSV 1029
T++++ A TT +C+ + +++ L ++ ++ + Q+ + N N + L+ V
Sbjct: 1303 TLEIVSASTTSRCK--LNRQAITLLSNAGVEDSTFLQMLEVELNQNAQTLVDV 1353
Score = 37 (18.1 bits), Expect = 9.4e-18, Sum P(4) = 9.4e-18
Identities = 5/35 (14%), Positives = 19/35 (54%)
Query: 846 QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEER 880
++ + G ++++ + NNG+ ++ Y+++
Sbjct: 1029 KVISLNGNFNNIDSGDINDNNNGNYNIIEELYKDK 1063
>UNIPROTKB|Q5E9G8 [details] [associations]
symbol:LGP2 "Putative uncharacterized protein LGP2"
species:9913 "Bos taurus" [GO:1900246 "positive regulation of RIG-I
signaling pathway" evidence=IEA] [GO:1900245 "positive regulation
of MDA-5 signaling pathway" evidence=IEA] [GO:0045824 "negative
regulation of innate immune response" evidence=IEA] [GO:0039536
"negative regulation of RIG-I signaling pathway" evidence=IEA]
[GO:0039534 "negative regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:0032481 "positive regulation of type I interferon
production" evidence=IEA] [GO:0032480 "negative regulation of type
I interferon production" evidence=IEA] [GO:0009615 "response to
virus" evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 CTD:79132 HOVERGEN:HBG106019 KO:K12649 OMA:ELRPYQW
GO:GO:0032481 EMBL:DAAA02049179 EMBL:DAAA02049177 EMBL:DAAA02049178
EMBL:BT020952 IPI:IPI00693785 RefSeq:NP_001015545.1
UniGene:Bt.27564 Ensembl:ENSBTAT00000065738 GeneID:508378
KEGG:bta:508378 NextBio:20868490 Uniprot:Q5E9G8
Length = 680
Score = 177 (67.4 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 39/95 (41%), Positives = 55/95 (57%)
Query: 423 AGNNSG----IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478
AGNNS IQ R +Q E++++FR G +N++VATS+ EEGLD+ CN+V+ +
Sbjct: 406 AGNNSQKTQMIQMTQRDQQ-EVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTN 464
Query: 479 VCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
S +Q+RGRAR S Y + G Q L N
Sbjct: 465 EISMVQARGRARASQSVYSFVAAQGSRELQRELTN 499
Score = 142 (55.0 bits), Expect = 7.6e-19, Sum P(2) = 7.6e-19
Identities = 50/184 (27%), Positives = 81/184 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TGSGKT A + R + L
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--- 136
E + + + GDMG A + +H++L+ T ++L L
Sbjct: 61 TQHCEEFSRMLERRWTITTLSGDMG----PRAGFGHVARRHDLLICTAELLQKALASPEE 116
Query: 137 -SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKV 195
+ +LN +L++DECHH Y I++++ L+ LP++ G+TASP V
Sbjct: 117 EEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQR-TRPLPQVLGLTASPGTGGV 175
Query: 196 SSSE 199
S+ E
Sbjct: 176 STLE 179
Score = 41 (19.5 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 551 TGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFH 584
TG ++TL ++ + C+ L D + +PK H
Sbjct: 172 TGGVSTLEGAIDHVLQLCANL--DTWCIMSPKDH 203
>UNIPROTKB|F1NDV4 [details] [associations]
symbol:IFIH1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003727 "single-stranded RNA binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0016925 "protein sumoylation" evidence=IEA]
[GO:0043021 "ribonucleoprotein complex binding" evidence=IEA]
[GO:0045087 "innate immune response" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR016024
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
SUPFAM:SSF48371 GO:GO:0003677 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0004386 GO:GO:0043021 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0016925
GeneTree:ENSGT00510000046789 OMA:KCGQAWG EMBL:AADN02058700
EMBL:AADN02058701 EMBL:AADN02058702 IPI:IPI00579734
Ensembl:ENSGALT00000018067 Uniprot:F1NDV4
Length = 689
Score = 207 (77.9 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 54/181 (29%), Positives = 96/181 (53%)
Query: 370 EKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPR--HCTWKTKYI--AG 424
EK++ L +L+E + E+ R IIF + +A+ L + + P+ K ++ AG
Sbjct: 358 EKLMKLRNTLMEEFTKTEEPRGIIFTKTRQSALALYHWIMDN-PKFEEVGIKAHFLIGAG 416
Query: 425 NNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484
+NS + ++ +Q E++++FR G +N+++AT++ EEGLD++ CN+VI + + +Q
Sbjct: 417 HNSETKPMTQNEQREVIDKFRGGSINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQ 476
Query: 485 SRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGED 544
+RGRAR S Y L+ SG + N N M K + +P N + +D
Sbjct: 477 ARGRARADESTYALVASSGSGAVEREDVNIFRE-NMMYKAIRRVQEMPPEEYLNKI--QD 533
Query: 545 F 545
F
Sbjct: 534 F 534
Score = 109 (43.4 bits), Expect = 1.3e-18, Sum P(2) = 1.3e-18
Identities = 42/170 (24%), Positives = 78/170 (45%)
Query: 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLK 95
+N I+ L TGSGKT +A+ + + + RK S + + LK
Sbjct: 9 ENIIICLPTGSGKTRVAVYITKDHLDKKRKASEQGKVIVLVNKVPLVEQHLRKEFNPFLK 68
Query: 96 VGKYWGDMGV--DFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY-----FKLNMIKVLI 148
+++ +G+ D ++ E + +++V++ T QIL + L + +L+ ++I
Sbjct: 69 --RWYQVIGLSGDSELKISFPEVVKRYDVIICTAQILENSLLNATEEDESVRLSDFSLII 126
Query: 149 LDECHHARGKHQYACIMTEFYHRLLET---GDSNLP-----RIFGMTASP 190
+DECHH + + Y IM + ++ N P +I G+TASP
Sbjct: 127 IDECHHTQKEGVYNNIMRRYLKEKIKNRKQAKENKPLIPQPQILGLTASP 176
>ZFIN|ZDB-GENE-120612-3 [details] [associations]
symbol:dhx58 "DEXH (Asp-Glu-X-His) box polypeptide
58" species:7955 "Danio rerio" [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0005524
"ATP binding" evidence=IEA] [GO:0016817 "hydrolase activity, acting
on acid anhydrides" evidence=IEA] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 InterPro:IPR021673
Pfam:PF00271 Pfam:PF04851 Pfam:PF11648 PROSITE:PS51194
SMART:SM00490 ZFIN:ZDB-GENE-120612-3 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
CTD:79132 KO:K12649 EMBL:JF970230 RefSeq:NP_001244086.1
UniGene:Dr.93597 GeneID:100148871 KEGG:dre:100148871 Uniprot:G3GMG3
Length = 679
Score = 242 (90.2 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 103/415 (24%), Positives = 189/415 (45%)
Query: 121 EVLVMTPQILLDGLRL----SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176
++++ T QIL + L + ++ +L++DECHH + Y IM + + +
Sbjct: 101 DLVICTAQILENALNNMDEDKHVEITDFTLLVIDECHHTNKESVYNKIMWRYVEKKVRK- 159
Query: 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASES-VLSNFIPFSTA 235
+ LP+I G+TASP S ++ + + + ++SK+ + + + +L NF+P
Sbjct: 160 EGRLPQILGLTASPGTGGNKSLDKAV-EHVLQICANLDSKIVSTKNYTPMLQNFVPKPKK 218
Query: 236 KFKFY-KYDEIPHALYTHLADELAMIE--LKHT--RSLENLDLNEAQAELIR--KKVSKI 288
++ + D+ P HL + MI + T R L L E +A+++ K K+
Sbjct: 219 EYDIVERRDKDPFG--DHLKSMMLMIHEFMPPTVSRGLRELGTQEYEADVVELEKAGVKV 276
Query: 289 NSTLL-YCLSELGVWL-ALKAAETISCYESDFFAWEQLDGFGETIIKKF--GSDAS-QAL 343
N+ L+ C L + AL +TI + A+ L+ F + K G+D Q L
Sbjct: 277 NNRLIAQCALHLRKYNDALLINDTIRMVD----AFRVLEEFYNSRSSKLLDGTDIFLQGL 332
Query: 344 VTYVPSGAEWS-IGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE-RVITAI 401
+ + E + D+++ K+ L LLE + R IIF + R T
Sbjct: 333 --FDENSLELKHLASDARYE------NPKLAQLQSRLLEEFQDTNSRGIIFSKTRRGTHC 384
Query: 402 VLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461
+ + + + + G +G ++ +Q ++ FR+G +N++++TS+ EEG
Sbjct: 385 LNDWVKTNRELQRVNITAGILTGAGNGANNMTQTEQKSVISHFRQGYLNLLISTSVAEEG 444
Query: 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLEN-YL 515
LD+ CNLV+ + + Q+ GRAR NS Y ++ G + L N YL
Sbjct: 445 LDIPECNLVVRYGLLTNEIAQQQASGRARASNSVYSVVADVGGREVRKELVNEYL 499
Score = 71 (30.1 bits), Expect = 1.7e-18, Sum P(2) = 1.7e-18
Identities = 15/38 (39%), Positives = 25/38 (65%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
R YQ E ++ AL+ +N+I++L TG GKT A+ + +
Sbjct: 6 RPYQEEVVQAALRGENSIIWLPTGGGKTRAAVYVAEKH 43
>UNIPROTKB|E2QXT4 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003677
GO:GO:0004386 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 OMA:ELRPYQW EMBL:AAEX03006454
Ensembl:ENSCAFT00000024900 Uniprot:E2QXT4
Length = 680
Score = 176 (67.0 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 61/195 (31%), Positives = 93/195 (47%)
Query: 332 IKKFGS--DASQALVTYVPSGAEWSIG--DDSKFNLDSGLLTE-----KIVCLIESLLEY 382
+K G D +A T V W + DD K L + L T+ K+ L + L E
Sbjct: 305 LKSLGDFYDRERATKTQVLQAERWLLALFDDYKNEL-AHLATQTPENPKLEMLEQILREQ 363
Query: 383 RGVEDI-RCIIFVE-RVITAIVLQSLLSELLPRHCTWKTKYI--AGNNSGIQCQSRKKQN 438
G D R IIF + R T +L L + + + + AGN+S +++ Q
Sbjct: 364 FGHSDSPRGIIFTQTRQSTHSLLLWLQQQPGLQTVDIRADLLIGAGNSSQNTHMTQRDQQ 423
Query: 439 EIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLL 498
E++ +FR G +N++VATS+ EEGLD+ CN+V+ + S +Q+RGRAR S Y
Sbjct: 424 EVIRKFRVGTLNLLVATSVAEEGLDIPQCNVVVRYGLLSNEISMVQARGRARAGRSIYSF 483
Query: 499 MVKSGDSTTQSRLEN 513
+ G + L N
Sbjct: 484 VATQGSRELRRELIN 498
Score = 138 (53.6 bits), Expect = 2.5e-18, Sum P(2) = 2.5e-18
Identities = 48/179 (26%), Positives = 80/179 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N IV+L TG+GKT R+ AY+ ++
Sbjct: 6 RPYQWEVIMPALEGKNIIVWLPTGAGKT-------RAAAYVAKR---HLETVDQAKVVVL 55
Query: 82 XXXXEAIKMHTD---LKVGKYWG--DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL 136
+ H + +GK W + D A + H++++ T ++L L
Sbjct: 56 VNRVHLVTQHCEEFSRMLGKRWAIITLSGDMGPRAGFGHLARSHDLIICTAELLQMALTS 115
Query: 137 ----SYFKLNMIKVLILDECHHARGKHQYACIMTEFY-HRLLETGDSNLPRIFGMTASP 190
+ +LN +L++DECHH Y I++ + H+L T LP++ G+TASP
Sbjct: 116 PEEEEHVELNAFSLLVVDECHHTHKDTVYNLILSRYLEHKLQRTRP--LPQVLGLTASP 172
>TAIR|locus:2153333 [details] [associations]
symbol:RTL3 "RNAse THREE-like protein 3" species:3702
"Arabidopsis thaliana" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA;ISS]
[GO:0004525 "ribonuclease III activity" evidence=IEA;ISS]
[GO:0005622 "intracellular" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0006396 "RNA processing" evidence=IEA]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
EMBL:CP002688 GenomeReviews:BA000015_GR Gene3D:3.30.160.20
GO:GO:0005622 GO:GO:0006396 GO:GO:0003725 GO:GO:0090305
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 EMBL:AB012240 HSSP:O67082
IPI:IPI00541445 RefSeq:NP_199328.1 UniGene:At.55380
ProteinModelPortal:Q9FKF0 SMR:Q9FKF0 PaxDb:Q9FKF0 PRIDE:Q9FKF0
EnsemblPlants:AT5G45150.1 GeneID:834551 KEGG:ath:AT5G45150
TAIR:At5g45150 HOGENOM:HOG000152519 InParanoid:Q9FKF0 OMA:PHVEPED
PhylomeDB:Q9FKF0 ProtClustDB:CLSN2916859 Genevestigator:Q9FKF0
Uniprot:Q9FKF0
Length = 957
Score = 258 (95.9 bits), Expect = 6.2e-18, P = 6.2e-18
Identities = 58/176 (32%), Positives = 99/176 (56%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
+V +E +LNYSF + +LL EA+T S + + RLEF GD++L+ T Y+ + Y
Sbjct: 3 SVEAVEKILNYSFVNKTLLKEAITQKSPL-------FDRLEFFGDSILEVAFTNYICHTY 55
Query: 1210 PGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGST 1269
P L L D+R+A+V+N+ +A +V H LH +L + L+K++ ++ K
Sbjct: 56 PNLKVKELRDLRTANVSNEKFARIAVNHNLHHFLLLQNPSLFKKVKNFAEAVRKEDDPVP 115
Query: 1270 FGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHP 1325
+G + PK L D +ES+A +F+D + + +++ R LLEP+ TP+ + P
Sbjct: 116 YG--GLVKAPKILADTLESIAATVFIDVNYDVKRLWEIFRSLLEPIYTPDDLLLQP 169
Score = 205 (77.2 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 71/248 (28%), Positives = 117/248 (47%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
+V +E +LNYSF + +LL E LTH + L +Q L F+G++ L T +LY Y
Sbjct: 414 SVEAVEKILNYSFVNKTLLKELLTHNNSPL------FQGLMFVGESALSLAFTKHLYLTY 467
Query: 1210 PGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGST 1269
P L P L+ +R A+ +D YA +VK G+++ + + + K +T D E + G
Sbjct: 468 PMLEPKDLSVLRDANTCHDKYACVAVKKGIYQSFIGS---VPKPEKMTTDFIELM--GKE 522
Query: 1270 FGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFH---PV 1326
V PK L +++ +AGA+++D N + + + R LLEP+ T + +R P
Sbjct: 523 DDPYRVVKAPKILVNLLAGVAGAVYIDVKYNVQRLLEIFRVLLEPIYTLDDLRMQLKQPF 582
Query: 1327 RELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVL 1386
L K H S+ G +V + +F + TAK +A +E +
Sbjct: 583 LMLFRLADK-HGKQIDFRYSKDGGSRKNIAQVYMDD-MFIASGCAKRIDTAKLLAAEEAI 640
Query: 1387 KSLRASFP 1394
+ L P
Sbjct: 641 QKLSECMP 648
Score = 55 (24.4 bits), Expect = 2.2e-12, Sum P(2) = 2.2e-12
Identities = 21/71 (29%), Positives = 29/71 (40%)
Query: 983 EAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCK 1042
EAIT K D LE GDS L+ A + + TY N L + +SN +
Sbjct: 23 EAITQKSPLFD----RLEFFGDSILEVAFTNYICHTYPNLKVKELRDLRTANVSNEKFAR 78
Query: 1043 LGCEQKLPGFI 1053
+ L F+
Sbjct: 79 IAVNHNLHHFL 89
>UNIPROTKB|A2A376 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003690 "double-stranded DNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0009615 "response
to virus" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0043330 "response to
exogenous dsRNA" evidence=IEA] [GO:0045087 "innate immune response"
evidence=IEA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00382 SMART:SM00490
GO:GO:0005524 GO:GO:0003727 GO:GO:0045087 GO:GO:0009615
EMBL:AL161783 GO:GO:0003690 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0043330
GO:GO:0032728 EMBL:AL353671 HGNC:HGNC:19102 HOGENOM:HOG000230911
HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182 SMR:A2A376
Ensembl:ENST00000379868 Uniprot:A2A376
Length = 722
Score = 170 (64.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 4 VSMESDTTEEVSADTL--PFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
+S S EVS L PF RNYQLE A+K +NTI+ TG GKT +++++ +
Sbjct: 19 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 78
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK 119
+ + + + G G + ++ +
Sbjct: 79 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVEN 137
Query: 120 HEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
++++++TPQIL++ L+ L++ ++I DECH+ +H Y IM + + L
Sbjct: 138 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG 197
Query: 179 NLPRIFGMTAS 189
LP++ G+TAS
Sbjct: 198 PLPQVIGLTAS 208
Score = 136 (52.9 bits), Expect = 2.2e-17, Sum P(2) = 2.2e-17
Identities = 37/145 (25%), Positives = 75/145 (51%)
Query: 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465
LS L P T + K N+G+ ++K I++ F+ G N+++ATS+ +EG+D+
Sbjct: 450 LSFLKPGILTGRGK--TNQNTGMTLPAQKC---ILDAFKASGDHNILIATSVADEGIDIA 504
Query: 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
CNLVI+++ V IQ+RGR R + S L+ + + ++ Y ++++
Sbjct: 505 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY-------KEKM 557
Query: 526 LSHASLPCSPLNNHMYGEDFYHVES 550
++ + L + ++ E H+++
Sbjct: 558 MNDSILRLQTWDEAVFREKILHIQT 582
>UNIPROTKB|E2RMV6 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 OMA:KCKAFAC EMBL:AAEX03007933
Ensembl:ENSCAFT00000002841 Uniprot:E2RMV6
Length = 929
Score = 166 (63.5 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 50/190 (26%), Positives = 88/190 (46%)
Query: 4 VSMESDTTEEVSADTLPFA-RNYQLE-ALENALKQNTIVFLETGSGKTLIAIMLLRSYAY 61
+S + EV++ P RNYQLE AL +NTI+ TG GKT +A+++ +
Sbjct: 223 LSQDPCPPSEVASTCTPLKPRNYQLELALPAKEGKNTIICAPTGCGKTFVALLICEHHLK 282
Query: 62 LLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVG-KYWGDMGVDFWDGATWKEEMSKH 120
+ + + ++G K G G + + ++ + +
Sbjct: 283 KFPQGQKGKIVFFAIQIPVYEQQNSVFSKYFE-RLGYKVAGISGATS-ENISVEQIVENN 340
Query: 121 EVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN 179
+++V+TPQIL++ LR L++ ++I DECH+ H Y IM + + L
Sbjct: 341 DIIVLTPQILVNCLRNGTIPSLSVFTLMIFDECHNTSKHHPYNMIMFNYLDQKLGGSSDP 400
Query: 180 LPRIFGMTAS 189
LP++ G+TAS
Sbjct: 401 LPQVVGLTAS 410
Score = 142 (55.0 bits), Expect = 2.7e-17, Sum P(2) = 2.7e-17
Identities = 44/141 (31%), Positives = 73/141 (51%)
Query: 381 EYRGVEDIRCIIFVER--VITA----IVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSR 434
EY + R I+FV+ ++ A I S LS L P T + K +N+G+ ++
Sbjct: 625 EYHLNPESRTILFVKTRALVDALKKWIEENSELSFLKPGILTGRGK--TNHNTGMTLPAQ 682
Query: 435 KKQNEIVEEFRR-GLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493
K ++ FR G +++ATS+ +EG+D+ CNLVI+++ V IQ+RGR R +
Sbjct: 683 KCA---LDAFRTDGDKKILIATSVADEGIDIAQCNLVILYEYVGNVIRMIQTRGRGRARG 739
Query: 494 SDYLLMVKSGDSTTQSRLENY 514
S L+ + D + +L Y
Sbjct: 740 SKCFLLTSNADVIKKEKLNIY 760
>UNIPROTKB|B3KWW1 [details] [associations]
symbol:DDX58 "cDNA FLJ44001 fis, clone TESTI4022716, highly
similar to Probable ATP-dependent RNA helicase DDX58 (EC 3.6.1.-)"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00382 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671 UniGene:Hs.190622
HGNC:HGNC:19102 HOVERGEN:HBG052325 ChiTaRS:DDX58 IPI:IPI01009182
EMBL:AK125989 SMR:B3KWW1 STRING:B3KWW1 Ensembl:ENST00000542096
UCSC:uc010mji.3 Uniprot:B3KWW1
Length = 854
Score = 170 (64.9 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 4 VSMESDTTEEVSADTL--PFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
+S S EVS L PF RNYQLE A+K +NTI+ TG GKT +++++ +
Sbjct: 151 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 210
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK 119
+ + + + G G + ++ +
Sbjct: 211 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVEN 269
Query: 120 HEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
++++++TPQIL++ L+ L++ ++I DECH+ +H Y IM + + L
Sbjct: 270 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG 329
Query: 179 NLPRIFGMTAS 189
LP++ G+TAS
Sbjct: 330 PLPQVIGLTAS 340
Score = 136 (52.9 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 37/145 (25%), Positives = 75/145 (51%)
Query: 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465
LS L P T + K N+G+ ++K I++ F+ G N+++ATS+ +EG+D+
Sbjct: 582 LSFLKPGILTGRGK--TNQNTGMTLPAQKC---ILDAFKASGDHNILIATSVADEGIDIA 636
Query: 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
CNLVI+++ V IQ+RGR R + S L+ + + ++ Y ++++
Sbjct: 637 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY-------KEKM 689
Query: 526 LSHASLPCSPLNNHMYGEDFYHVES 550
++ + L + ++ E H+++
Sbjct: 690 MNDSILRLQTWDEAVFREKILHIQT 714
>MGI|MGI:2442858 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0002230 "positive regulation of defense response
to virus by host" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003690 "double-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=ISO;IDA] [GO:0003727
"single-stranded RNA binding" evidence=ISO;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005524 "ATP binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0005856 "cytoskeleton" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0005923 "tight
junction" evidence=ISO] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=ISO] [GO:0009597 "detection of virus" evidence=ISO]
[GO:0009615 "response to virus" evidence=IMP] [GO:0015629 "actin
cytoskeleton" evidence=ISO] [GO:0016020 "membrane" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0016817
"hydrolase activity, acting on acid anhydrides" evidence=IEA]
[GO:0030054 "cell junction" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=ISO] [GO:0032587 "ruffle membrane"
evidence=ISO] [GO:0032727 "positive regulation of interferon-alpha
production" evidence=ISO] [GO:0032728 "positive regulation of
interferon-beta production" evidence=ISO;IMP] [GO:0039529 "RIG-I
signaling pathway" evidence=ISO] [GO:0042802 "identical protein
binding" evidence=ISO] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=ISO] [GO:0042995
"cell projection" evidence=IEA] [GO:0043330 "response to exogenous
dsRNA" evidence=IMP] [GO:0045087 "innate immune response"
evidence=ISO;IMP] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISO] [GO:0046872 "metal
ion binding" evidence=IEA] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS50209 PROSITE:PS51194 SMART:SM00490 MGI:MGI:2442858
GO:GO:0005829 GO:GO:0005524 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0009615 GO:GO:0030334 GO:GO:0005923
EMBL:AL831793 EMBL:CH466538 GO:GO:0003690 Reactome:REACT_107772
GO:GO:0032587 GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GO:GO:0042993 GO:GO:0043330 GO:GO:0032727 eggNOG:COG1111
GeneTree:ENSGT00510000046789 GO:GO:0032728 CTD:23586
HOGENOM:HOG000230911 HOVERGEN:HBG052325 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 GO:GO:0009597 GO:GO:0039529 EMBL:AY553221
EMBL:AK049305 EMBL:AK078287 EMBL:AK087261 IPI:IPI00273914
IPI:IPI00458717 IPI:IPI00655015 IPI:IPI00655142 RefSeq:NP_766277.3
UniGene:Mm.86382 PDB:3TBK PDBsum:3TBK ProteinModelPortal:Q6Q899
SMR:Q6Q899 STRING:Q6Q899 PhosphoSite:Q6Q899 PaxDb:Q6Q899
PRIDE:Q6Q899 DNASU:230073 Ensembl:ENSMUST00000037907 GeneID:230073
KEGG:mmu:230073 UCSC:uc008shh.1 UCSC:uc012dbu.1 InParanoid:A2AP28
EvolutionaryTrace:Q6Q899 NextBio:379764 Bgee:Q6Q899
CleanEx:MM_DDX58 Genevestigator:Q6Q899
GermOnline:ENSMUSG00000040296 Uniprot:Q6Q899
Length = 926
Score = 162 (62.1 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 58/229 (25%), Positives = 104/229 (45%)
Query: 4 VSMESDTTEEVSADTL--PFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
+S E S++ L P RNYQLE A K +NTI+ TG GKT +++++ +
Sbjct: 223 LSQNPGPPSEASSNNLHSPLKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHH 282
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDL-KVGKYWGDMGVDFWDGATWKEEMS 118
L + P +A ++G + D + + +
Sbjct: 283 --LKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYNIASISGATSDSVSVQHIIE 340
Query: 119 KHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFY-HRLLETG 176
++++++TPQIL++ L L++ ++I DECH+ H Y IM + H+L E+
Sbjct: 341 DNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLGESR 400
Query: 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESV 225
D LP++ G+TAS ++E+ Q I L +++ V ++V
Sbjct: 401 DP-LPQVVGLTASVGVGDAKTAEEAM-QHICKLCAALDASVIATVRDNV 447
Score = 145 (56.1 bits), Expect = 3.5e-17, Sum P(2) = 3.5e-17
Identities = 41/172 (23%), Positives = 82/172 (47%)
Query: 381 EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC--QSRKKQN 438
EY + + I+FV+ L+ + E P K + G + + Q
Sbjct: 622 EYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKPGILTGRGRTNRATGMTLPAQK 680
Query: 439 EIVEEFRR-GLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYL 497
++E FR G N+++ATS+ +EG+D+ CNLVI+++ V IQ+RGR R ++S
Sbjct: 681 CVLEAFRASGDNNILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCF 740
Query: 498 LMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDFYHVE 549
L+ S D + + N +++++++ + L + +G+ + ++
Sbjct: 741 LLTSSADVIEKEK-------ANMIKEKIMNESILRLQTWDEMKFGKTVHRIQ 785
Score = 40 (19.1 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 7/21 (33%), Positives = 13/21 (61%)
Query: 398 ITAIVLQSLLSELLPRHCTWK 418
I + V++ ++S + RH WK
Sbjct: 890 IESFVVEDIVSGVQNRHSKWK 910
>UNIPROTKB|K7GMB7 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:CU856598
Ensembl:ENSSSCT00000033560 Uniprot:K7GMB7
Length = 588
Score = 162 (62.1 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 52/176 (29%), Positives = 86/176 (48%)
Query: 341 QALVTYVPSGAEWSIG--DDSKFNLD----SGLLTEKIVCLIESLL-EYRGVEDIRCIIF 393
+A T + W + DD K L G K+ L E L +++G + R IIF
Sbjct: 314 RATKTQILQAERWLLALFDDHKNELARLAADGPENPKLEVLKEILQKQFKGPKSPRGIIF 373
Query: 394 VE-RVITAIVLQSLLSELLPRHCTWKTKYI--AGNNSG---IQCQSRKKQNEIVEEFRRG 447
R +L L + + + + + AGN+S + +++ Q E++++FR G
Sbjct: 374 TRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGNSSQSTPMTQMTQRDQQEVIQKFRTG 433
Query: 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSG 503
+N++VATS+ EEGLD+ CN+V+ + S +Q+RGRAR S Y + G
Sbjct: 434 ALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQG 489
Score = 139 (54.0 bits), Expect = 4.1e-17, Sum P(2) = 4.1e-17
Identities = 48/183 (26%), Positives = 81/183 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-- 137
E D + + GDMG A + H++L+ T ++L L
Sbjct: 61 TQHCEEFSRMLDRRWAITTLSGDMG----PRAGFGHLARSHDLLICTAELLQKALTSEEE 116
Query: 138 --YFKLNMIKVLILDECHHARGKHQYACIMTEFY-HRLLETGDSNLPRIFGMTASPIKSK 194
+ +LN+ +L++DECHH Y I++++ H+ T LP++ G+TASP +
Sbjct: 117 EEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRT--KPLPQVLGLTASPGTGR 174
Query: 195 VSS 197
S+
Sbjct: 175 AST 177
>UNIPROTKB|O95786 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0043330 "response
to exogenous dsRNA" evidence=IEA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0032728 "positive regulation of interferon-beta
production" evidence=IDA;IMP] [GO:0002230 "positive regulation of
defense response to virus by host" evidence=IMP] [GO:0032727
"positive regulation of interferon-alpha production"
evidence=IDA;IMP] [GO:0045087 "innate immune response"
evidence=IMP;TAS] [GO:0008270 "zinc ion binding" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0039528 "cytoplasmic
pattern recognition receptor signaling pathway in response to
virus" evidence=TAS] [GO:0003725 "double-stranded RNA binding"
evidence=IMP;IDA;TAS] [GO:0030334 "regulation of cell migration"
evidence=IDA] [GO:0005923 "tight junction" evidence=IDA]
[GO:0032587 "ruffle membrane" evidence=IDA] [GO:0015629 "actin
cytoskeleton" evidence=IDA] [GO:0039529 "RIG-I signaling pathway"
evidence=IMP] [GO:0003727 "single-stranded RNA binding"
evidence=IMP] [GO:0009615 "response to virus" evidence=TAS]
[GO:0034344 "regulation of type III interferon production"
evidence=TAS] [GO:0005829 "cytosol" evidence=TAS] [GO:0032480
"negative regulation of type I interferon production" evidence=TAS]
[GO:0042802 "identical protein binding" evidence=IPI] [GO:0051091
"positive regulation of sequence-specific DNA binding transcription
factor activity" evidence=IC] [GO:0042993 "positive regulation of
transcription factor import into nucleus" evidence=IDA] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=IDA] [GO:0009597 "detection of virus"
evidence=IDA] InterPro:IPR001650 InterPro:IPR003593
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS50209 PROSITE:PS51194 SMART:SM00382
SMART:SM00490 GO:GO:0005829 GO:GO:0005524 Reactome:REACT_6900
GO:GO:0019048 GO:GO:0051091 GO:GO:0046872 GO:GO:0015629
GO:GO:0008270 GO:GO:0003727 GO:GO:0045944 GO:GO:0045087
GO:GO:0002230 GO:GO:0030334 GO:GO:0005923 EMBL:AL161783
EMBL:CH471071 GO:GO:0003690 Reactome:REACT_107772 GO:GO:0032587
GO:GO:0003725 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0032480
GO:GO:0008026 GO:GO:0042993 GO:GO:0043330 GO:GO:0032727
eggNOG:COG1111 GO:GO:0032728 EMBL:AF038963 EMBL:AL353671
EMBL:BC132786 EMBL:BC136610 EMBL:BX647917 EMBL:AL137608
IPI:IPI00295503 IPI:IPI00654731 PIR:T46312 RefSeq:NP_055129.2
UniGene:Hs.190622 PDB:2LWD PDB:2LWE PDB:2QFB PDB:2QFD PDB:2RMJ
PDB:2YKG PDB:3LRN PDB:3LRR PDB:3NCU PDB:3OG8 PDB:3TMI PDB:4AY2
PDBsum:2LWD PDBsum:2LWE PDBsum:2QFB PDBsum:2QFD PDBsum:2RMJ
PDBsum:2YKG PDBsum:3LRN PDBsum:3LRR PDBsum:3NCU PDBsum:3OG8
PDBsum:3TMI PDBsum:4AY2 ProteinModelPortal:O95786 SMR:O95786
DIP:DIP-35444N IntAct:O95786 MINT:MINT-2799116 STRING:O95786
PhosphoSite:O95786 PaxDb:O95786 PRIDE:O95786
Ensembl:ENST00000379882 Ensembl:ENST00000379883 GeneID:23586
KEGG:hsa:23586 UCSC:uc003zra.3 UCSC:uc010mjk.1 CTD:23586
GeneCards:GC09M032447 HGNC:HGNC:19102 HPA:CAB012643 MIM:609631
neXtProt:NX_O95786 PharmGKB:PA134994272 HOGENOM:HOG000230911
HOVERGEN:HBG052325 InParanoid:O95786 KO:K12646 OMA:KCKAFAC
OrthoDB:EOG4SQWW0 PhylomeDB:O95786 ChiTaRS:DDX58
EvolutionaryTrace:O95786 GenomeRNAi:23586 NextBio:46208
ArrayExpress:O95786 Bgee:O95786 CleanEx:HS_DDX58
Genevestigator:O95786 GermOnline:ENSG00000107201 GO:GO:0009597
GO:GO:0034344 GO:GO:0039529 Uniprot:O95786
Length = 925
Score = 170 (64.9 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 4 VSMESDTTEEVSADTL--PFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
+S S EVS L PF RNYQLE A+K +NTI+ TG GKT +++++ +
Sbjct: 222 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 281
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK 119
+ + + + G G + ++ +
Sbjct: 282 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVEN 340
Query: 120 HEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
++++++TPQIL++ L+ L++ ++I DECH+ +H Y IM + + L
Sbjct: 341 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG 400
Query: 179 NLPRIFGMTAS 189
LP++ G+TAS
Sbjct: 401 PLPQVIGLTAS 411
Score = 136 (52.9 bits), Expect = 4.3e-17, Sum P(2) = 4.3e-17
Identities = 37/145 (25%), Positives = 75/145 (51%)
Query: 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465
LS L P T + K N+G+ ++K I++ F+ G N+++ATS+ +EG+D+
Sbjct: 653 LSFLKPGILTGRGK--TNQNTGMTLPAQKC---ILDAFKASGDHNILIATSVADEGIDIA 707
Query: 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
CNLVI+++ V IQ+RGR R + S L+ + + ++ Y ++++
Sbjct: 708 QCNLVILYEYVGNVIKMIQTRGRGRARGSKCFLLTSNAGVIEKEQINMY-------KEKM 760
Query: 526 LSHASLPCSPLNNHMYGEDFYHVES 550
++ + L + ++ E H+++
Sbjct: 761 MNDSILRLQTWDEAVFREKILHIQT 785
>UNIPROTKB|Q96C10 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0019048 "virus-host interaction"
evidence=IEA] [GO:0045087 "innate immune response" evidence=IEA]
[GO:0051607 "defense response to virus" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0039536 "negative regulation of RIG-I signaling
pathway" evidence=IMP;IDA] [GO:0003725 "double-stranded RNA
binding" evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0045088 "regulation of innate immune response"
evidence=IDA] [GO:0039534 "negative regulation of MDA-5 signaling
pathway" evidence=IMP] [GO:0032480 "negative regulation of type I
interferon production" evidence=IDA] [GO:0045824 "negative
regulation of innate immune response" evidence=IDA] [GO:0032481
"positive regulation of type I interferon production" evidence=ISS]
[GO:0009615 "response to virus" evidence=ISS] [GO:1900245 "positive
regulation of MDA-5 signaling pathway" evidence=ISS] [GO:1900246
"positive regulation of RIG-I signaling pathway" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR001650
InterPro:IPR006935 InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0005737 GO:GO:0019048 GO:GO:0046872 GO:GO:0003677
GO:GO:0008270 GO:GO:0003727 GO:GO:0045087 GO:GO:0051607
GO:GO:0009615 GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534
GO:GO:0039536 GO:GO:0045824 eggNOG:COG1111 GO:GO:1900245
GO:GO:1900246 EMBL:AK021416 EMBL:BC014949 IPI:IPI00303746
RefSeq:NP_077024.2 UniGene:Hs.55918 PDB:2RQA PDB:2W4R PDB:3EQT
PDBsum:2RQA PDBsum:2W4R PDBsum:3EQT ProteinModelPortal:Q96C10
SMR:Q96C10 IntAct:Q96C10 MINT:MINT-1460040 STRING:Q96C10
PhosphoSite:Q96C10 DMDM:50401123 PaxDb:Q96C10 PRIDE:Q96C10
DNASU:79132 Ensembl:ENST00000251642 Ensembl:ENST00000563880
GeneID:79132 KEGG:hsa:79132 UCSC:uc002hyw.3 CTD:79132
GeneCards:GC17M040255 HGNC:HGNC:29517 HPA:HPA018670 HPA:HPA019570
MIM:608588 neXtProt:NX_Q96C10 PharmGKB:PA162383566
HOGENOM:HOG000230992 HOVERGEN:HBG106019 InParanoid:Q96C10 KO:K12649
OMA:ELRPYQW OrthoDB:EOG44QT15 ChiTaRS:DHX58
EvolutionaryTrace:Q96C10 GenomeRNAi:79132 NextBio:67993
ArrayExpress:Q96C10 Bgee:Q96C10 CleanEx:HS_DHX58
Genevestigator:Q96C10 GermOnline:ENSG00000108771 GO:GO:0032481
Uniprot:Q96C10
Length = 678
Score = 170 (64.9 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 33/91 (36%), Positives = 54/91 (59%)
Query: 423 AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482
AGN+S +++ Q E++++F+ G +N++VATS+ EEGLD+ CN+V+ + S
Sbjct: 406 AGNSSQSTHMTQRDQQEVIQKFQDGTLNLLVATSVAEEGLDIPHCNVVVRYGLLTNEISM 465
Query: 483 IQSRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
+Q+RGRAR S Y + G + L N
Sbjct: 466 VQARGRARADQSVYAFVATEGSRELKRELIN 496
Score = 132 (51.5 bits), Expect = 4.7e-17, Sum P(2) = 4.7e-17
Identities = 46/175 (26%), Positives = 78/175 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R+YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--- 136
E + D + V GDMG A + H++L+ T ++L L
Sbjct: 61 TQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPEE 116
Query: 137 -SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
+ +L + ++++DECHH Y IM+++ L+ LP++ G+TASP
Sbjct: 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASP 170
Score = 45 (20.9 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 27/139 (19%), Positives = 55/139 (39%)
Query: 780 DYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLV 839
D LL+ T + +D + R++ +K + C+ + + L H
Sbjct: 289 DALLIHDTVRAVDALAALQDFYHREHVTKTQILCAERRLLALFDDRKNELAHLATHG--- 345
Query: 840 CTPHNGQIYCITGVLGHL--NANS----LFTRNNGSVTTYKKHYEERYGIQLCFDREPLL 893
P N ++ + +L ++NS +FTR S + +++ G+Q R LL
Sbjct: 346 --PENPKLEMLEKILQRQFSSSNSPRGIIFTRTRQSAHSLLLWLQQQQGLQTVDIRAQLL 403
Query: 894 NGRRIFHVQNYLSKCRQQK 912
G ++++ QQ+
Sbjct: 404 IGAGNSSQSTHMTQRDQQE 422
>UNIPROTKB|F1S0P6 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:1900245 "positive regulation of MDA-5
signaling pathway" evidence=IEA] [GO:0045824 "negative regulation
of innate immune response" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0039534
"negative regulation of MDA-5 signaling pathway" evidence=IEA]
[GO:0032481 "positive regulation of type I interferon production"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727 "single-stranded
RNA binding" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0008270 GO:GO:0003727 GO:GO:0051607
GO:GO:0003725 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0032480 GO:GO:0039534 GO:GO:0039536
GO:GO:0045824 GeneTree:ENSGT00510000046789 GO:GO:1900245
GO:GO:1900246 OMA:ELRPYQW GO:GO:0032481 EMBL:CU856598
Ensembl:ENSSSCT00000018960 Ensembl:ENSSSCT00000035155
Uniprot:F1S0P6
Length = 681
Score = 162 (62.1 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 52/176 (29%), Positives = 86/176 (48%)
Query: 341 QALVTYVPSGAEWSIG--DDSKFNLD----SGLLTEKIVCLIESLL-EYRGVEDIRCIIF 393
+A T + W + DD K L G K+ L E L +++G + R IIF
Sbjct: 314 RATKTQILQAERWLLALFDDHKNELARLAADGPENPKLEVLKEILQKQFKGPKSPRGIIF 373
Query: 394 VE-RVITAIVLQSLLSELLPRHCTWKTKYI--AGNNSG---IQCQSRKKQNEIVEEFRRG 447
R +L L + + + + + AGN+S + +++ Q E++++FR G
Sbjct: 374 TRTRQSAHSLLLWLQQQPSLQTVDIRAQLLIGAGNSSQSTPMTQMTQRDQQEVIQKFRTG 433
Query: 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSG 503
+N++VATS+ EEGLD+ CN+V+ + S +Q+RGRAR S Y + G
Sbjct: 434 ALNLLVATSVAEEGLDIPQCNVVVRYGLLTNEISMVQARGRARASQSVYSFVAAQG 489
Score = 139 (54.0 bits), Expect = 6.5e-17, Sum P(2) = 6.5e-17
Identities = 48/183 (26%), Positives = 81/183 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RPYQWEVIMPALEGRNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-- 137
E D + + GDMG A + H++L+ T ++L L
Sbjct: 61 TQHCEEFSRMLDRRWAITTLSGDMG----PRAGFGHLARSHDLLICTAELLQKALTSEEE 116
Query: 138 --YFKLNMIKVLILDECHHARGKHQYACIMTEFY-HRLLETGDSNLPRIFGMTASPIKSK 194
+ +LN+ +L++DECHH Y I++++ H+ T LP++ G+TASP +
Sbjct: 117 EEHVELNVFSLLVVDECHHTHKDTVYNIILSQYLKHKFQRT--KPLPQVLGLTASPGTGR 174
Query: 195 VSS 197
S+
Sbjct: 175 AST 177
>ZFIN|ZDB-GENE-081104-438 [details] [associations]
symbol:ifih1 "interferon induced with helicase C
domain 1" species:7955 "Danio rerio" [GO:0016817 "hydrolase
activity, acting on acid anhydrides" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003677 "DNA
binding" evidence=IEA] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 ZFIN:ZDB-GENE-081104-438
GO:GO:0005524 GO:GO:0003677 GO:GO:0004386 Gene3D:1.10.533.10
InterPro:IPR011029 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GeneTree:ENSGT00510000046789 EMBL:AL954669 EMBL:CABZ01064081
EMBL:CABZ01064082 EMBL:CABZ01064083 IPI:IPI00492508
Ensembl:ENSDART00000003913 Uniprot:F1R4B9
Length = 997
Score = 247 (92.0 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 107/436 (24%), Positives = 194/436 (44%)
Query: 132 DGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY-----HRLLETGDSNL---PRI 183
DG+ LS F L +++DECHH + Y IM + ++LL+ D L P+I
Sbjct: 419 DGIELSQFTL-----MVIDECHHTKKGGVYNHIMIRYLKQKNRNQLLKKQDKTLVPIPQI 473
Query: 184 FGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFI--PFST-AKFKFY 240
G+TASP V + + H L+ N +T +++ PF AK +
Sbjct: 474 LGLTASP---GVGGAVSQQMAEEHILQICANLDAFTIKTKTFEEEEAKTPFKRIAKAEER 530
Query: 241 KYDEIPHALYTHLADEL---AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLS 297
K D + + DE+ A ++ +N + Q E + + N + C
Sbjct: 531 KEDPFGDVI-KKIMDEIHTHADLQPLCEPGTQNYEQWVVQKE--QNAAKEENQNVRVCAE 587
Query: 298 ELGVWL-ALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAE-WSI 355
L + AL + TI SD F + LD + +K S + +T + +++
Sbjct: 588 HLRQYNEALHQSNTIRM--SDAFRF--LDKYHNEELKTKSSPDEEGNITITDTERFLFTL 643
Query: 356 GDDSKFNLDSGL----LTEKIVCLIESLL--EYRGVEDIRCIIFVERVITAIVLQSLLSE 409
D K L + + +++++ E+ E R IIF + ++AI L + E
Sbjct: 644 FKDKKAKLQELMGKPQYENNNLAQLKTIILKEFSTREKARGIIFTQTRLSAIALCQWIEE 703
Query: 410 LLPR--HCTWKTKYI--AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465
P+ + Y+ G+ S ++ + +Q ++++ FR G +N+++AT++ EEGLD+
Sbjct: 704 N-PKFDEVGVRASYLIGGGDQSVVKPMTAAEQKDVLKRFRTGEINLLIATTVAEEGLDIA 762
Query: 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEV 525
CN+VI + + IQ+RGR R ++S Y L+ ++G + S N+ R+++
Sbjct: 763 ECNVVIRYCLVTNEVAMIQARGRGRAEDSSYTLVAEAGSGVAERE------SVNEYREKM 816
Query: 526 LSHASLPCSPLNNHMY 541
+S A +N Y
Sbjct: 817 MSKAIAKVCKMNRADY 832
Score = 150 (57.9 bits), Expect = 2.6e-06, P = 2.6e-06
Identities = 60/245 (24%), Positives = 110/245 (44%)
Query: 2 EPVSMESDTTEEVSADTLPFA-RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSY 59
E ++ D ++ SA R+YQ+E AL++ N IV L TGSGKT +A+ + + +
Sbjct: 276 EEKDLKEDEDDDSSASKREIKLRDYQMEVARPALEEKNIIVCLPTGSGKTRVAVFITKEH 335
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDM-GVDFWDGAT-----W 113
L RK ++ H + G++ V+ GA+ +
Sbjct: 336 --LERKQR----MGQKGKVVVLVNKVPLVEQHYKAEFGRFLKHQYSVERVSGASQLKISF 389
Query: 114 KEEMSKHEVLVMTPQILLDGLRLSY------FKLNMIKVLILDECHHARGKHQYACIMTE 167
+ + K+++++ T QIL + L + +L+ ++++DECHH + Y IM
Sbjct: 390 PQIIEKNDIIICTAQILENSLAKAKNGDEDGIELSQFTLMVIDECHHTKKGGVYNHIMIR 449
Query: 168 FY-----HRLLETGDSNL---PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT 219
+ ++LL+ D L P+I G+TASP V + + H L+ N +T
Sbjct: 450 YLKQKNRNQLLKKQDKTLVPIPQILGLTASP---GVGGAVSQQMAEEHILQICANLDAFT 506
Query: 220 CASES 224
+++
Sbjct: 507 IKTKT 511
>WB|WBGene00001090 [details] [associations]
symbol:drh-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR001650 InterPro:IPR006935
InterPro:IPR021673 Pfam:PF00271 Pfam:PF04851 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0016246
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 HSSP:P10081
EMBL:AF480439 EMBL:FO080250 PIR:T32534 RefSeq:NP_501018.1
UniGene:Cel.32668 ProteinModelPortal:G5EDI8 SMR:G5EDI8
IntAct:G5EDI8 EnsemblMetazoa:F15B10.2 GeneID:177425
KEGG:cel:CELE_F15B10.2 CTD:177425 WormBase:F15B10.2 OMA:YRMINIR
NextBio:896758 Uniprot:G5EDI8
Length = 1037
Score = 161 (61.7 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 46/147 (31%), Positives = 82/147 (55%)
Query: 364 DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLS---ELLPRHCTWKTK 420
++ ++++ + ++E L+ R D R IIFV A +L +L+ ELL K++
Sbjct: 679 ENPMISKTVQYIVEQNLQ-RA--DSRTIIFVRTRYEATILNKVLNSNEELLMLGI--KSE 733
Query: 421 YIAGNNSGIQCQ-----SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475
+++G N S++KQ E ++ F G + ++V+TS+ EEGLDV C+LVI ++
Sbjct: 734 WMSGLNKSTASSADISASKQKQMEKLKMFADGEIRILVSTSVAEEGLDVPECSLVIKYNY 793
Query: 476 SRTVCSFIQSRGRARMQNSDYLLMVKS 502
+ + +Q RGR R NS+ +L+ S
Sbjct: 794 ATNEIAHVQRRGRGRALNSECVLITNS 820
Score = 142 (55.0 bits), Expect = 1.2e-16, Sum P(2) = 1.2e-16
Identities = 52/183 (28%), Positives = 83/183 (45%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
RNYQ E + AL+ +NTIV TGSGKT+IA +++ + + R
Sbjct: 294 RNYQEELCQVALQGKNTIVTAPTGSGKTVIAANIIKEH-FESRSSEGKRFKALFMTPNSM 352
Query: 82 XXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL---------- 131
+A + + L Y + + D + + +++V TPQ+++
Sbjct: 353 ILNQQAASISSYLD-HVYHTQI-IQGSDNVPTRNVIQSKDLIVATPQMIVNLCNEHRNSL 410
Query: 132 -DGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS----NLPRIFGM 186
D RL F L+ ++ DECH+ Y+ IM E YH L G+ +LP+I G+
Sbjct: 411 DDESRLDQFFLSTFTIIFFDECHNTVKNSPYSNIMRE-YHYLKNMGNMPEGHSLPQIIGL 469
Query: 187 TAS 189
TAS
Sbjct: 470 TAS 472
Score = 47 (21.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 10/21 (47%), Positives = 15/21 (71%)
Query: 728 NLKHL-GRIQLIPNQVLLCRR 747
NL+ L G ++P++VLLC R
Sbjct: 506 NLEELRGYSPIVPDKVLLCER 526
Score = 42 (19.8 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 16/60 (26%), Positives = 29/60 (48%)
Query: 251 THLADEL-AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAE 309
T L DE A+I+ T S+ + L ++ ++N+ L CLS L + L ++ +
Sbjct: 925 TRLTDEQQALIKYNATGSI---NCRRENCGLKLGQLIEVNTVDLPCLSALSIVLLVEGTD 981
Score = 39 (18.8 bits), Expect = 5.4e-06, Sum P(2) = 5.4e-06
Identities = 11/29 (37%), Positives = 15/29 (51%)
Query: 303 LALKAAETISCYESDFFAWEQLDGFGETI 331
L+L E I C E + E+ DGF E +
Sbjct: 10 LSLYDKEIILCLEPIYRDPEKGDGFSELL 38
Score = 38 (18.4 bits), Expect = 0.00066, Sum P(2) = 0.00066
Identities = 9/26 (34%), Positives = 14/26 (53%)
Query: 326 GFGETIIKKFGSDASQALVTYVPSGA 351
GF + K +D QAL+ Y +G+
Sbjct: 917 GFWSLVRKTRLTDEQQALIKYNATGS 942
>UNIPROTKB|I3LGW3 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 GeneTree:ENSGT00510000046789 OMA:KCKAFAC
EMBL:FP340205 Ensembl:ENSSSCT00000026775 Uniprot:I3LGW3
Length = 960
Score = 163 (62.4 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 52/204 (25%), Positives = 92/204 (45%)
Query: 4 VSMESDTTEEVSADTLPFA-RNYQLE-ALENALKQNTIVFLETGSGKTLIAIMLLRSYAY 61
+S S ++ E P R YQLE AL +NTI+ TG GKT +++++ +
Sbjct: 223 LSQNSCSSSEAPHTYSPLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLK 282
Query: 62 LLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVG-KYWGDMGVDFWDGATWKEEMSKH 120
+ H + ++G K G G D ++ + +
Sbjct: 283 KFPQGRKGKVVFFAIQLPVYEQQKSVFSKHFE-RLGYKVAGISGATS-DTVCVEQIVENN 340
Query: 121 EVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN 179
+++++TPQIL++ L L++ ++I DECH+ +H Y IM + R L +
Sbjct: 341 DIIILTPQILVNCLTNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDS 400
Query: 180 LPRIFGMTAS----PIKSKVSSSE 199
LP++ G+TAS K+K ++E
Sbjct: 401 LPQVIGLTASVGVGDAKNKAEATE 424
Score = 139 (54.0 bits), Expect = 1.3e-16, Sum P(2) = 1.3e-16
Identities = 37/137 (27%), Positives = 65/137 (47%)
Query: 381 EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC--QSRKKQN 438
EY + R I+FV+ L+ + E P+ K + G Q + Q
Sbjct: 625 EYHLNPETRTILFVKTRALVDALKKWIKEN-PKLSFLKPSILTGRGKTNQNIGMTLPAQK 683
Query: 439 EIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYL 497
+++ FR N +++ TS+ +EG+D+ CNLVI+++ V IQ+RGR R + S
Sbjct: 684 CVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF 743
Query: 498 LMVKSGDSTTQSRLENY 514
L+ + D + ++ Y
Sbjct: 744 LLTANADLIDKEKMNMY 760
Score = 43 (20.2 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 668 VNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKK 713
++ S ++ K+ C++++ + H N + R I+ L +KK
Sbjct: 606 IDPSNENPKLRDLCFILQEEYHLNPE--TRTILFVKTRALVDALKK 649
Score = 37 (18.1 bits), Expect = 4.5e-06, Sum P(2) = 4.5e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 1261 FEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
F K+ L +T ++ + S L IESLA +IF + G
Sbjct: 459 FRKVELRTTDRFKCIIS---QLMMEIESLAKSIFEELG 493
>UNIPROTKB|Q9GLV6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9823 "Sus scrofa" [GO:0032587 "ruffle membrane"
evidence=ISS] [GO:0015629 "actin cytoskeleton" evidence=ISS]
[GO:0005923 "tight junction" evidence=ISS] [GO:0003727
"single-stranded RNA binding" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] [GO:0030334 "regulation
of cell migration" evidence=ISS] [GO:0039529 "RIG-I signaling
pathway" evidence=ISS] [GO:0045087 "innate immune response"
evidence=ISS] [GO:0032728 "positive regulation of interferon-beta
production" evidence=ISS] [GO:0032727 "positive regulation of
interferon-alpha production" evidence=ISS] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=ISS]
[GO:0008270 "zinc ion binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR001650 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS50209
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005737
GO:GO:0046872 GO:GO:0015629 GO:GO:0008270 GO:GO:0003727
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GO:GO:0032727 GO:GO:0032728
HOVERGEN:HBG052325 GO:GO:0039529 EMBL:AF181119 UniGene:Ssc.15885
ProteinModelPortal:Q9GLV6 SMR:Q9GLV6 Uniprot:Q9GLV6
Length = 940
Score = 160 (61.4 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 48/184 (26%), Positives = 84/184 (45%)
Query: 23 RNYQLE-ALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQLE AL +NTI+ TG GKT +++++ + +
Sbjct: 242 RKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLKKFPRGRKGKVVFFAIQLPVY 301
Query: 82 XXXXEAIKMHTDLKVG-KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF- 139
H + ++G K G G D ++ + +++++TPQIL++ L
Sbjct: 302 EQQKSVFSKHFE-RLGYKVAGISGATS-DTVCVEQIVENSDIIILTPQILVNCLTNGTIP 359
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTAS----PIKSKV 195
L++ ++I DECH+ +H Y IM + R L +LP++ G+TAS K+K
Sbjct: 360 SLSVFTLMIFDECHNTSKQHPYNVIMFSYLDRKLGGSSDSLPQVIGLTASVGVGDAKNKA 419
Query: 196 SSSE 199
++E
Sbjct: 420 EATE 423
Score = 139 (54.0 bits), Expect = 2.5e-16, Sum P(2) = 2.5e-16
Identities = 37/137 (27%), Positives = 65/137 (47%)
Query: 381 EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC--QSRKKQN 438
EY + R I+FV+ L+ + E P+ K + G Q + Q
Sbjct: 624 EYHLNPETRTILFVKTRALVDALKKWIKEN-PKLSFLKPSILTGRGKTNQNIGMTLPAQK 682
Query: 439 EIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYL 497
+++ FR N +++ TS+ +EG+D+ CNLVI+++ V IQ+RGR R + S
Sbjct: 683 CVLDTFRTDKDNKILITTSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGRGRARGSKCF 742
Query: 498 LMVKSGDSTTQSRLENY 514
L+ + D + ++ Y
Sbjct: 743 LLTANADLIDKEKMNMY 759
Score = 43 (20.2 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 10/46 (21%), Positives = 23/46 (50%)
Query: 668 VNQSPQDTKITYHCYLIELKQHFNYDISARNIVLAMRTELESEIKK 713
++ S ++ K+ C++++ + H N + R I+ L +KK
Sbjct: 605 IDPSNENPKLRDLCFILQEEYHLNPE--TRTILFVKTRALVDALKK 648
Score = 37 (18.1 bits), Expect = 8.7e-06, Sum P(2) = 8.7e-06
Identities = 14/38 (36%), Positives = 21/38 (55%)
Query: 1261 FEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
F K+ L +T ++ + S L IESLA +IF + G
Sbjct: 458 FRKVELRTTDRFKCIIS---QLMMEIESLAKSIFEELG 492
>UNIPROTKB|F1MKU1 [details] [associations]
symbol:DDX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045944 "positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0045087 "innate immune
response" evidence=IEA] [GO:0043330 "response to exogenous dsRNA"
evidence=IEA] [GO:0042993 "positive regulation of transcription
factor import into nucleus" evidence=IEA] [GO:0042802 "identical
protein binding" evidence=IEA] [GO:0039529 "RIG-I signaling
pathway" evidence=IEA] [GO:0032728 "positive regulation of
interferon-beta production" evidence=IEA] [GO:0032727 "positive
regulation of interferon-alpha production" evidence=IEA]
[GO:0032587 "ruffle membrane" evidence=IEA] [GO:0030334 "regulation
of cell migration" evidence=IEA] [GO:0015629 "actin cytoskeleton"
evidence=IEA] [GO:0009597 "detection of virus" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005923 "tight
junction" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003727 "single-stranded RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003690
"double-stranded DNA binding" evidence=IEA] [GO:0002230 "positive
regulation of defense response to virus by host" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271
Pfam:PF11648 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0015629 GO:GO:0008270 GO:GO:0003727 GO:GO:0045944
GO:GO:0045087 GO:GO:0002230 GO:GO:0030334 GO:GO:0005923
GO:GO:0003690 GO:GO:0032587 GO:GO:0003725 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 GO:GO:0042993
GO:GO:0043330 GO:GO:0032727 GeneTree:ENSGT00510000046789
GO:GO:0032728 OMA:KCKAFAC GO:GO:0009597 GO:GO:0039529
EMBL:DAAA02021991 IPI:IPI00716102 Ensembl:ENSBTAT00000061377
Uniprot:F1MKU1
Length = 942
Score = 165 (63.1 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 55/198 (27%), Positives = 96/198 (48%)
Query: 2 EPVSM---ESDTTEEVSADTLPFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLL 56
EP S ++ + EV P RNYQLE A K +NTI+ TG GKT +++++
Sbjct: 217 EPESQNLSQNSCSSEVPPTYSPLKPRNYQLELALPAQKGKNTIICAPTGCGKTFVSLLIC 276
Query: 57 RSYAYLLRKPSPXXXXXXXXXXXXXXXXXEAIK-MHTDL--KVG-KYWGDMGVDFWDGAT 112
+ L+K P E K + ++ + G K G G + D +
Sbjct: 277 EHH---LKK-FPQGRKGKVVVFAVQVPLYEQQKSVFSEYFERFGYKVSGISG-ETADNIS 331
Query: 113 WKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHR 171
++ + ++++++TPQIL++ L+ L++ ++I DECH+ H Y IM + +
Sbjct: 332 VEQIVENNDIIILTPQILVNSLKDGTIPSLSIFTLMIFDECHNTNKHHPYNMIMFHYLDQ 391
Query: 172 LLETGDSNLPRIFGMTAS 189
L +LP++ G+TAS
Sbjct: 392 KLGGSSDSLPQVIGLTAS 409
Score = 133 (51.9 bits), Expect = 3.1e-16, Sum P(2) = 3.1e-16
Identities = 44/160 (27%), Positives = 73/160 (45%)
Query: 371 KIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQ 430
K +C I EY + R I+FV+ L++ + E P+ K + G Q
Sbjct: 615 KDLCFILQE-EYHLNPETRTILFVKTRALFQALKNWIEEN-PKLSFLKPGILTGRGRTNQ 672
Query: 431 CQSRK--KQNEIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487
Q ++ FR + +++ATS+ +EG+D+ CNLVI+++ V IQ+RG
Sbjct: 673 TMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRG 732
Query: 488 RARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLS 527
R R + S L+ + D + +L KM E +S
Sbjct: 733 RGRARGSKCFLLTSNADVIEKEKLN---ICQEKMMNESIS 769
Score = 53 (23.7 bits), Expect = 6.0e-08, Sum P(2) = 6.0e-08
Identities = 40/180 (22%), Positives = 77/180 (42%)
Query: 668 VNQSPQDTKITYHCYLIELKQHFNYD------ISARNIVLAMRTELESEIKKVNFDLEVE 721
++ S ++ K+ C++++ + H N + + R + A++ +E E K++F ++
Sbjct: 605 MDPSNENAKLKDLCFILQEEYHLNPETRTILFVKTRALFQALKNWIE-ENPKLSF---LK 660
Query: 722 RGRLTVNLKHLGRIQLIPNQVLLCRRFQITLFRVIMDHNLDKLNEILD-GFELRD-NLEI 779
G LT GR L ++ + FR D + + D G ++ NL I
Sbjct: 661 PGILTGR----GRTNQTMGMTLPAQKCALDAFRTNRDSKILIATSVADEGIDIAQCNLVI 716
Query: 780 DYLLLPSTGQLIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLV 839
Y + G +I K + T R GSK + S NA ++ + +C K+ N +
Sbjct: 717 LYEYV---GNVI--KMIQTRGRGRARGSKCFLLTS---NADVIEKEKLNICQEKMMNESI 768
>WB|WBGene00008400 [details] [associations]
symbol:drh-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0016817 "hydrolase activity,
acting on acid anhydrides" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0040010 "positive regulation of growth rate" evidence=IMP]
[GO:0035188 "hatching" evidence=IMP] [GO:0006974 "response to DNA
damage stimulus" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] [GO:0007276 "gamete generation" evidence=IMP]
[GO:0003727 "single-stranded RNA binding" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0008186
"RNA-dependent ATPase activity" evidence=IDA] [GO:0016246 "RNA
interference" evidence=IMP] [GO:0043186 "P granule" evidence=IDA]
[GO:0070063 "RNA polymerase binding" evidence=IPI] [GO:0000794
"condensed nuclear chromosome" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0070090 "metaphase plate"
evidence=IDA] [GO:0030422 "production of siRNA involved in RNA
interference" evidence=IMP] InterPro:IPR001650 InterPro:IPR011545
InterPro:IPR021673 Pfam:PF00270 Pfam:PF00271 Pfam:PF11648
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0009792
GO:GO:0035188 GO:GO:0040010 GO:GO:0003727 GO:GO:0006974
GO:GO:0003725 GO:GO:0000794 GO:GO:0030422 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0007276 GO:GO:0008026
GO:GO:0043186 GO:GO:0008186 eggNOG:COG1111
GeneTree:ENSGT00510000046789 KO:K12646 EMBL:Z79752 GO:GO:0070090
PIR:T20332 RefSeq:NP_492161.3 ProteinModelPortal:Q93413 SMR:Q93413
IntAct:Q93413 MINT:MINT-6178703 STRING:Q93413 PaxDb:Q93413
EnsemblMetazoa:D2005.5 GeneID:172546 KEGG:cel:CELE_D2005.5
UCSC:D2005.5 CTD:172546 WormBase:D2005.5 HOGENOM:HOG000018535
InParanoid:Q93413 OMA:ACNLIIK NextBio:875985 Uniprot:Q93413
Length = 1119
Score = 188 (71.2 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 57/162 (35%), Positives = 91/162 (56%)
Query: 371 KIVCLIESLL--EYRGVEDIRCIIFVERVITAIVLQSLLSE--LLPRHCTWKTK---YIA 423
+IV +++ L ++ + R IIFV + TA + L+E +L + + + Y+
Sbjct: 742 EIVLRLKNTLTNQFHVAPESRVIIFVTQRSTAQRVSDFLNESKVLDQFGNYGEQMVGYVL 801
Query: 424 GNNS-GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD-PSRTVCS 481
G N G Q+ ++Q +++F G + VIVATS++EEGLDV +CNL+I ++ S +
Sbjct: 802 GTNKQGAVQQTSQEQQLTLDKFNNGRLKVIVATSVVEEGLDVTACNLIIKYNCSSGSAIQ 861
Query: 482 FIQSRGRARMQNS-DYLLMVKSGDSTTQSRLENYLASGNKMR 522
+Q RGRAR +NS LL VKS + T++ N L S MR
Sbjct: 862 LVQQRGRARAKNSRSVLLSVKSSINETET---NALISEKYMR 900
Score = 115 (45.5 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 50/200 (25%), Positives = 90/200 (45%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIML-LRSYAYLLRKPSPXXXXXXXXXXXX 80
R YQ E ++ AL+ +N ++ TGSGKT +AI L+ + P
Sbjct: 372 RTYQEELVQPALEGKNCVIVAPTGSGKTEVAIYAALKHIEERTSQGKPSRVVLLVPKIPL 431
Query: 81 XXXXXEAIKMHTD--LKVGKYWG-DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL- 136
+ + + +V + G + V G ++E+ V VMTPQIL++ L+
Sbjct: 432 VGQQKDRFLKYCNGMYEVNGFHGSESSVS---GTGRRDEVIATHVSVMTPQILINMLQSV 488
Query: 137 ---SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193
++ ++I DE H A H Y I +++++ P+I G+TAS +
Sbjct: 489 RQNERLYVSDFSMMIFDEVHKAAKNHPYVLI-----NQMVQEWKYEKPQIIGLTAS-LSV 542
Query: 194 KVSSSEQDYWQKIHDLETLM 213
KV ++D Q ++D+ ++
Sbjct: 543 KVDG-QKDENQMLNDIYNML 561
Score = 43 (20.2 bits), Expect = 6.5e-16, Sum P(3) = 6.5e-16
Identities = 20/81 (24%), Positives = 38/81 (46%)
Query: 1315 MITPETMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRL-FEHTFLDAD 1373
+I+ + MR V+++TE +K + K VA + + +E Q N RL E+
Sbjct: 893 LISEKYMRLC-VKKITENGEKQLAAEVKRVAELNAAERKRNLEEQLNLRLRHENKIYKLM 951
Query: 1374 KKTAKKVACKEV-LKSLRASF 1393
K CK + +K + +++
Sbjct: 952 CSNCSKEFCKSIYIKKVFSNY 972
>ASPGD|ASPL0000054215 [details] [associations]
symbol:dclA species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
InterPro:IPR011545 Pfam:PF00270 GO:GO:0005524 EMBL:BN001308
GO:GO:0003676 InterPro:IPR014001 PROSITE:PS51192 GO:GO:0008026
EnsemblFungi:CADANIAT00002628 Uniprot:C8VQK5
Length = 411
Score = 215 (80.7 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 49/166 (29%), Positives = 86/166 (51%)
Query: 88 IKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVL 147
++ + D+ VG+ +G +G D W TW E + K+ V+V T ++L L ++ ++ I +L
Sbjct: 60 LRNNLDMNVGRIFGALGFDLWSRQTWTEFLEKYMVVVCTAEVLYQCLLHAHIRMEQINLL 119
Query: 148 ILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIH 207
+ DE HH + H A I+ + Y T S PR+ GMTASP+ +K D Q
Sbjct: 120 VFDEAHHTKKDHVCARIIRDSY---FPTAQSKRPRVLGMTASPVDTK-----GDVAQAAM 171
Query: 208 DLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253
+LE ++SK+ T + S++ + K + + YD + + T +
Sbjct: 172 NLELYLDSKIATASQLSLVHQVV--RRPKEEAWIYDRLEQSFGTEI 215
Score = 63 (27.2 bits), Expect = 9.8e-16, Sum P(2) = 9.8e-16
Identities = 23/93 (24%), Positives = 43/93 (46%)
Query: 364 DSGLLTEKIVCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSEL-LPRHCTWKTKY 421
+ G + K+ L L E YR + R ++F R T ++L L + L +P
Sbjct: 291 EPGQSSHKVQVLRRRLTEHYRETPETRSLVFTTRRYTTLMLLELFNALEMPHLRPGLLIG 350
Query: 422 IAGNN-SGIQCQSRKKQNEIVEEFRRGLVNVIV 453
+ N+ +G + R+ Q ++ FR G +N ++
Sbjct: 351 VQANDFAGPEISCRE-QFLAIDRFRSGEINCLI 382
>POMBASE|SPAC20H4.04 [details] [associations]
symbol:fml2 "ATP-dependent 3' to 5' DNA helicase
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0003677
"DNA binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730 "nucleolus"
evidence=IDA] [GO:0006281 "DNA repair" evidence=ISO] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=ISO]
[GO:0043138 "3'-5' DNA helicase activity" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 PomBase:SPAC20H4.04
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 eggNOG:COG1111 GO:GO:0033567
RefSeq:NP_593624.1 ProteinModelPortal:Q9HE09
EnsemblFungi:SPAC20H4.04.1 GeneID:2542014 KEGG:spo:SPAC20H4.04
OMA:ILIVVER OrthoDB:EOG4HHSCC NextBio:20803094 Uniprot:Q9HE09
Length = 783
Score = 201 (75.8 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 113/434 (26%), Positives = 184/434 (42%)
Query: 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175
E + V MTPQ L + L+ I LI DE H A G H YA +M R +
Sbjct: 200 EYNTKRVFFMTPQTLQNDLKEHLLDAKSIICLIFDEAHRATGNHSYAQVM-----RAVLR 254
Query: 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESV-LSNFIPFST 234
+S+ R+ G+TA+P S S QK+ D L SK+ ES+ + +++ F
Sbjct: 255 SNSHF-RVLGLTATPGSSTASV------QKVVDC--LHISKLIVRNEESIDIRSYV-FHK 304
Query: 235 AKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLL- 293
K + K I + L + A + + L L E + K + +L
Sbjct: 305 -KIQLIKVT-ISSEMNI-LKSDFANLYRPYFNFLRQKKLIPINCECLNIKAYTLFVSLRK 361
Query: 294 YCLSELGVWLALKAAETISCYE---SDFFAWEQLDGFG---------ETIIKKFGSDASQ 341
Y S V K+ + +SC+ S LD G ET K G + Q
Sbjct: 362 YSFSSKNVQSKEKS-KIMSCFTLLISCAHITYLLDCHGIIQFYQKLVETKNKAEGKGSGQ 420
Query: 342 ALVTYVPSGAEWSIGDDSKFNLDSGLLTE--KIVCLIESLLEY-----RGVEDIRCIIFV 394
+ + + + + N GL K+ L+E L E+ G ++ R +IF
Sbjct: 421 SFWLFTSKPFAFYL--EHLHNKIQGLSLNHPKMNHLLELLKEHFKDTSEGYQNQRVMIFT 478
Query: 395 ERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC-QSRKKQNEIVEEFRRGLVNVIV 453
E TA + + L + P + +I NS ++ +Q E +++FR G++N +V
Sbjct: 479 EFRNTAEYITTTLLAIRPM--VRASLFIGQANSAYSTGMNQMQQKETIDQFRAGVINTLV 536
Query: 454 ATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLEN 513
ATSI EEGLD+ +++I +D S + IQ GR + S + ++ + D S+ E
Sbjct: 537 ATSIGEEGLDIGDTDMIICYDASSSPIRTIQRMGRTGRKKSGKVFVLLTEDCE-DSKWER 595
Query: 514 YLASGNKMRKEVLS 527
S +++K + S
Sbjct: 596 SQVSYRRVQKVIES 609
Score = 84 (34.6 bits), Expect = 3.3e-15, Sum P(2) = 3.3e-15
Identities = 18/37 (48%), Positives = 24/37 (64%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
RNYQ E E AL N ++ L TG GKT IA +++ +Y
Sbjct: 112 RNYQKEFCEQALFHNLLLALPTGLGKTFIAAVVMLNY 148
>UNIPROTKB|D4A8D9 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR007087
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00952196
Ensembl:ENSRNOT00000065299 ArrayExpress:D4A8D9 Uniprot:D4A8D9
Length = 704
Score = 145 (56.1 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 45/171 (26%), Positives = 76/171 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
RNYQLE A K +NT++ TG GKT +++++ + L P
Sbjct: 200 RNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHH--LKNFPHGQKGKVVFFANQIP 257
Query: 82 XXXXEAIKMHTDLKVGKY--WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
+A + Y G G D + + + ++++++TPQIL++ L
Sbjct: 258 VYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQILVNSLNNGAI 316
Query: 140 -KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTAS 189
L++ ++I DECH+ H Y IM + L LP++ G+TAS
Sbjct: 317 PSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTAS 367
Score = 137 (53.3 bits), Expect = 7.6e-15, Sum P(2) = 7.6e-15
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 379 LLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC--QSRKK 436
L EY + + I+FV+ L+ + E P K + G Q +
Sbjct: 572 LQEYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKPGILTGRGRTNQATGMTLPA 630
Query: 437 QNEIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
Q ++E FR N +++ATS+ +E +D+ CNLVI+++ V + IQ+RGR R ++S
Sbjct: 631 QKCVLEAFRANADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGRGRARDSK 690
Query: 496 YLLMVKSGD 504
L+ S D
Sbjct: 691 CFLLTSSAD 699
Score = 40 (19.1 bits), Expect = 7.6e-05, Sum P(2) = 7.6e-05
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1139 RQFQVHAERLVNVRHLESLLNYSFRDPSLLVE 1170
R+F+ E L NV S N RD L+++
Sbjct: 542 RRFEEKVEELENVSREPSNENRKLRDLYLILQ 573
>UNIPROTKB|F5H5W6 [details] [associations]
symbol:DDX58 "Probable ATP-dependent RNA helicase DDX58"
species:9606 "Homo sapiens" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR003593 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00382
GO:GO:0005524 GO:GO:0003676 EMBL:AL161783 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL353671
HGNC:HGNC:19102 ChiTaRS:DDX58 IPI:IPI01012440
ProteinModelPortal:F5H5W6 SMR:F5H5W6 Ensembl:ENST00000545044
UCSC:uc011lnr.1 ArrayExpress:F5H5W6 Bgee:F5H5W6 Uniprot:F5H5W6
Length = 536
Score = 170 (64.9 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 49/191 (25%), Positives = 87/191 (45%)
Query: 4 VSMESDTTEEVSADTL--PFA-RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSY 59
+S S EVS L PF RNYQLE A+K +NTI+ TG GKT +++++ +
Sbjct: 19 LSENSCPPSEVSDTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHH 78
Query: 60 AYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSK 119
+ + + + G G + ++ +
Sbjct: 79 LKKFPQGQKGKVVFFANQIPVYEQQKSVFSKYFERHGYRVTGISGATA-ENVPVEQIVEN 137
Query: 120 HEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178
++++++TPQIL++ L+ L++ ++I DECH+ +H Y IM + + L
Sbjct: 138 NDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFNYLDQKLGGSSG 197
Query: 179 NLPRIFGMTAS 189
LP++ G+TAS
Sbjct: 198 PLPQVIGLTAS 208
Score = 107 (42.7 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 28/81 (34%), Positives = 47/81 (58%)
Query: 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465
LS L P T + K N+G+ ++K I++ F+ G N+++ATS+ +EG+D+
Sbjct: 450 LSFLKPGILTGRGK--TNQNTGMTLPAQKC---ILDAFKASGDHNILIATSVADEGIDIA 504
Query: 466 SCNLVIMFDPSRTVCSFIQSR 486
CNLVI+++ V IQ+R
Sbjct: 505 QCNLVILYEYVGNVIKMIQTR 525
>UNIPROTKB|G3MWK8 [details] [associations]
symbol:DHX58 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003677 GO:GO:0004386 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GeneTree:ENSGT00510000046789 EMBL:DAAA02049179
EMBL:DAAA02049177 EMBL:DAAA02049178 Ensembl:ENSBTAT00000065634
Uniprot:G3MWK8
Length = 480
Score = 142 (55.0 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 50/184 (27%), Positives = 81/184 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R YQ E + AL+ +N I++L TGSGKT A + R + L
Sbjct: 4 RPYQWEVIMPALEGKNIIIWLPTGSGKTRAAAYVARRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--- 136
E + + + GDMG A + +H++L+ T ++L L
Sbjct: 61 TQHCEEFSRMLERRWTITTLSGDMG----PRAGFGHVARRHDLLICTAELLQKALASPEE 116
Query: 137 -SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKV 195
+ +LN +L++DECHH Y I++++ L+ LP++ G+TASP V
Sbjct: 117 EEHVELNAFSLLVVDECHHTHKDTVYNIILSQYLELKLQR-TRPLPQVLGLTASPGTGGV 175
Query: 196 SSSE 199
S+ E
Sbjct: 176 STLE 179
Score = 134 (52.2 bits), Expect = 1.1e-14, Sum P(2) = 1.1e-14
Identities = 28/68 (41%), Positives = 47/68 (69%)
Query: 423 AGNNSG----IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP-SR 477
AGNNS IQ R +Q E++++FR G +N++VATS+ EEGLD+ CN+V+ + +
Sbjct: 406 AGNNSQKTQMIQMTQRDQQ-EVIQKFRTGTLNLLVATSVAEEGLDIPQCNVVVRYGLLTL 464
Query: 478 TVCSFIQS 485
T+C+ +++
Sbjct: 465 TMCNMLRA 472
Score = 41 (19.5 bits), Expect = 4.1e-05, Sum P(2) = 4.1e-05
Identities = 10/34 (29%), Positives = 18/34 (52%)
Query: 551 TGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFH 584
TG ++TL ++ + C+ L D + +PK H
Sbjct: 172 TGGVSTLEGAIDHVLQLCANL--DTWCIMSPKDH 203
>RGD|1309460 [details] [associations]
symbol:Ddx58 "DEAD (Asp-Glu-Ala-Asp) box polypeptide 58"
species:10116 "Rattus norvegicus" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR007087 InterPro:IPR011545 InterPro:IPR021673
Pfam:PF00270 Pfam:PF00271 Pfam:PF11648 PROSITE:PS00028
PROSITE:PS51194 SMART:SM00490 RGD:1309460 GO:GO:0005524
GO:GO:0008270 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 IPI:IPI00780835
Ensembl:ENSRNOT00000060764 UCSC:RGD:1309460 ArrayExpress:D4ADT6
Uniprot:D4ADT6
Length = 922
Score = 145 (56.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 45/171 (26%), Positives = 76/171 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
RNYQLE A K +NT++ TG GKT +++++ + L P
Sbjct: 244 RNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHH--LKNFPHGQKGKVVFFANQIP 301
Query: 82 XXXXEAIKMHTDLKVGKY--WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
+A + Y G G D + + + ++++++TPQIL++ L
Sbjct: 302 VYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQILVNSLNNGAI 360
Query: 140 -KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTAS 189
L++ ++I DECH+ H Y IM + L LP++ G+TAS
Sbjct: 361 PSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTAS 411
Score = 137 (53.3 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 38/129 (29%), Positives = 63/129 (48%)
Query: 379 LLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQC--QSRKK 436
L EY + + I+FV+ L+ + E P K + G Q +
Sbjct: 616 LQEYHLKPETKTILFVKTRALVDALKKWIEEN-PALSFLKPGILTGRGRTNQATGMTLPA 674
Query: 437 QNEIVEEFRRGLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495
Q ++E FR N +++ATS+ +E +D+ CNLVI+++ V + IQ+RGR R ++S
Sbjct: 675 QKCVLEAFRANADNNILIATSVADERIDIAQCNLVILYEYVGNVINMIQTRGRGRARDSK 734
Query: 496 YLLMVKSGD 504
L+ S D
Sbjct: 735 CFLLTSSAD 743
Score = 40 (19.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 11/32 (34%), Positives = 16/32 (50%)
Query: 1139 RQFQVHAERLVNVRHLESLLNYSFRDPSLLVE 1170
R+F+ E L NV S N RD L+++
Sbjct: 586 RRFEEKVEELENVSREPSNENRKLRDLYLILQ 617
>POMBASE|SPAC9.05 [details] [associations]
symbol:fml1 "ATP-dependent 3' to 5' DNA helicase, FANCM
ortholog Fml1" species:4896 "Schizosaccharomyces pombe" [GO:0000732
"strand displacement" evidence=IDA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=ISO;IDA] [GO:0005730
"nucleolus" evidence=IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0006281 "DNA repair" evidence=ISO] [GO:0009378 "four-way
junction helicase activity" evidence=IDA] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0033567 "DNA replication,
Okazaki fragment processing" evidence=ISO] [GO:0043140
"ATP-dependent 3'-5' DNA helicase activity" evidence=IC]
[GO:0071821 "FANCM-MHF complex" evidence=ISS] [GO:0071932
"replication fork reversal" evidence=IDA] [GO:2000042 "negative
regulation of double-strand break repair via homologous
recombination" evidence=IMP] [GO:0003690 "double-stranded DNA
binding" evidence=ISS] InterPro:IPR001650 InterPro:IPR002464
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 PomBase:SPAC9.05 GO:GO:0005829
GO:GO:0005524 EMBL:CU329670 GO:GO:0005730 GenomeReviews:CU329670_GR
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0043140 GO:GO:0000732 GO:GO:0009378
GO:GO:0071821 eggNOG:COG1111 GO:GO:0033567 GO:GO:0071932 PIR:T39190
RefSeq:NP_593348.2 ProteinModelPortal:Q9UT23 STRING:Q9UT23
EnsemblFungi:SPAC9.05.1 GeneID:2543668 KEGG:spo:SPAC9.05
HOGENOM:HOG000076770 KO:K14635 OMA:RTENSID OrthoDB:EOG4JHGPV
NextBio:20804674 GO:GO:2000042 Uniprot:Q9UT23
Length = 834
Score = 155 (59.6 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 46/178 (25%), Positives = 86/178 (48%)
Query: 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP--RHCTWKTKYIAGNNS 427
E + ++ E +D R +IFVE +A + L + P R + + +
Sbjct: 415 EHLERIVTEYFEKEQTKDTRIMIFVEIRSSAEEILRFLGKFYPNVRPAIFIGQSAVRKAA 474
Query: 428 GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487
G+ S+K QNE V++F++G VN ++ATSI EEGLD+ +++I +D S + +Q G
Sbjct: 475 GM---SQKLQNETVKQFQKGEVNTLIATSIGEEGLDIGEVDMIICYDASASPIRMLQRMG 531
Query: 488 RARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGEDF 545
R + Y+ M+ + +++ E + ++ ++S L S + + E F
Sbjct: 532 RTGRKRKGYIYMLLTRGKE-EAKWERAKDAYRTLQDNIVSGRGLSLSEKSYRILPEKF 588
Score = 121 (47.7 bits), Expect = 4.7e-14, Sum P(2) = 4.7e-14
Identities = 45/171 (26%), Positives = 72/171 (42%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQ ++ AL +N +V L TG GKT IA +++ +Y LR
Sbjct: 74 RDYQFNIVQKALFENVLVALPTGLGKTFIAAVVMMNY---LRWFPKSYIVFMAPTKPLVT 130
Query: 83 XXXEAIKMHTDL---KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
EA T + + + G + V T + V +TPQ +L+ ++
Sbjct: 131 QQMEACYKITGIPKSQTAELSGHVPV-----TTRNQYYQSRNVFFVTPQTILNDIKHGIC 185
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
I L++DE H + G + Y E H LL + N RI ++A+P
Sbjct: 186 DRTRISCLVIDEAHRSTGNYAYV----EVVH-LLSLSNKNF-RILALSATP 230
>FB|FBgn0038889 [details] [associations]
symbol:CG7922 species:7227 "Drosophila melanogaster"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0004386 "helicase activity" evidence=ISS] [GO:0003677 "DNA
binding" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 EMBL:AE014297 GO:GO:0005524
GO:GO:0003677 GO:GO:0006200 GO:GO:0016887 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 KO:K10896
GeneTree:ENSGT00640000091530 RefSeq:NP_650971.2
ProteinModelPortal:Q9VDA0 SMR:Q9VDA0 IntAct:Q9VDA0
MINT:MINT-4080825 EnsemblMetazoa:FBtr0084109 GeneID:42543
KEGG:dme:Dmel_CG7922 UCSC:CG7922-RA FlyBase:FBgn0038889
InParanoid:Q9VDA0 OMA:HRAKGRY OrthoDB:EOG451C5Q PhylomeDB:Q9VDA0
GenomeRNAi:42543 NextBio:829338 ArrayExpress:Q9VDA0 Bgee:Q9VDA0
Uniprot:Q9VDA0
Length = 1489
Score = 163 (62.4 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
Identities = 48/153 (31%), Positives = 83/153 (54%)
Query: 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQ---SRKKQNEIVEE 443
D R I+F E + +++ LL + P + + G S + ++K+Q +I+ +
Sbjct: 432 DSRAIVFCEYRESVMLIHRLLLQHRP---VLRPRCFVGQGSTVGASYALTQKQQLQIMTD 488
Query: 444 FRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT-VCSFIQSRGRA-RMQNSDYLLMVK 501
FR G NV+VATSI EEGLDV +++ FD T FIQ GR R +N + +++V
Sbjct: 489 FRSGTSNVLVATSIGEEGLDVGEVEMIVCFDICSTNPTRFIQRIGRTGRKKNGEVVMLVT 548
Query: 502 SGDSTTQSRLENYLASGNKMRKEVLSHASLPCS 534
G Q L++ LA+ +++ K++L+ + + S
Sbjct: 549 EGRE--QQVLKDVLANKDQINKKLLNSSVVKLS 579
Score = 84 (34.6 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
Identities = 18/43 (41%), Positives = 30/43 (69%)
Query: 17 DTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
+ LP R+YQ +++AL +NT+V L TG GKT IA +++ ++
Sbjct: 54 NNLPL-RSYQQTIVQSALFKNTLVVLPTGLGKTFIAAVVMYNF 95
Score = 73 (30.8 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
Identities = 29/112 (25%), Positives = 50/112 (44%)
Query: 115 EEMSKHEVLVMTPQIL-LDGLRLS---YFKLNMIKVLILDECHHARGKHQYA----CIMT 166
E + V TPQ++ D L F IK++++DE H A+G++ Y C+M
Sbjct: 146 ELWASKRVFFATPQVVHSDMLEADGECSFPFGSIKLIVVDEAHRAKGRYAYTQVADCLMA 205
Query: 167 EF-YHRLLETGDSNLP-RIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK 216
Y R+L S P R A+ ++ S+ Q W D++ ++ +
Sbjct: 206 RNRYFRMLAL--SATPGRTMEDVAAVCRNLYISNLQVRWDTSIDVQPYIHRR 255
Score = 42 (19.8 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
Identities = 9/37 (24%), Positives = 22/37 (59%)
Query: 684 IELKQHFNYDISARNIVLAMRTELESEIKKVNFDLEV 720
+E+K N + A +IV + +L+ ++ ++ +LE+
Sbjct: 1019 VEVKSSLNLKMHAESIVEDLDIDLDDFLEPMDKELEL 1055
Score = 41 (19.5 bits), Expect = 6.1e-12, Sum P(5) = 6.1e-12
Identities = 8/25 (32%), Positives = 15/25 (60%)
Query: 756 IMDHNLDKLNEILDGFELRDNLEID 780
I+DH ++KL + + E N ++D
Sbjct: 1067 IVDHQMEKLEKNCEQKETAHNNDLD 1091
Score = 38 (18.4 bits), Expect = 7.8e-12, Sum P(4) = 7.8e-12
Identities = 14/63 (22%), Positives = 30/63 (47%)
Query: 753 FRVIMD--HNLDKLNEILDGFELRDNLEIDYLLLPSTGQLID-WKTVATVLFPRDNGSKH 809
+++++D +D++NE+L G + L P Q + T+ +F D ++H
Sbjct: 776 YQLLLDICDGMDQMNELLQGDNSGAEISFRDELNPIYNQSPKKFDTICEQIF--DGLNEH 833
Query: 810 NMN 812
+N
Sbjct: 834 GLN 836
>TIGR_CMR|CHY_1444 [details] [associations]
symbol:CHY_1444 "ribonuclease III" species:246194
"Carboxydothermus hydrogenoformans Z-2901" [GO:0004525
"ribonuclease III activity" evidence=ISS] [GO:0006396 "RNA
processing" evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872
EMBL:CP000141 GenomeReviews:CP000141_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_360276.1 ProteinModelPortal:Q3AC58
STRING:Q3AC58 GeneID:3727428 KEGG:chy:CHY_1444 PATRIC:21276019
BioCyc:CHYD246194:GJCN-1443-MONOMER Uniprot:Q3AC58
Length = 235
Score = 154 (59.3 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 36/79 (45%), Positives = 51/79 (64%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYML--PEIPRCY-QRLEFLGDAVLDYLITVYLY 1206
N+ LE +L ++F +PS+L+ A+TH SY PE + +RLEFLGDAVL+ I+ YL+
Sbjct: 5 NLISLEKILGFNFNNPSILLSAITHPSYAFEHPEEGIEHNERLEFLGDAVLELFISDYLF 64
Query: 1207 NKYPGLSPGYLTDMRSASV 1225
+P S G LT +RS V
Sbjct: 65 RTFPQKSEGDLTKLRSRLV 83
Score = 73 (30.8 bits), Expect = 1.1e-11, Sum P(2) = 1.1e-11
Identities = 41/150 (27%), Positives = 63/150 (42%)
Query: 1248 HELYKRINITVDSFEKLSLGS-TFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQ 1306
+EL +IN+ D F +L G G S L + +E++ GA++ D C E F
Sbjct: 89 YELAFKINL--DKFLRLGKGEFKAGGNQRMS---NLANAVEAVIGAVYFD--CGIEAAFS 141
Query: 1307 SIRPLLEPMITPETMRFHPVRELT---EYCQKNHFSMKKPVASRISG---KAAVTVEVQA 1360
I L + PE + P E T E QK ++ + G + T V
Sbjct: 142 FITRLYGEKLKPENLEQLPKDEKTTLQELLQKEKNNVLRYEILLEEGPPHQKIFTAGVII 201
Query: 1361 NGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
N +L T KK A++ A K+ L+ L+
Sbjct: 202 NDKLIA-TGRGKSKKEAEQEAAKKALELLK 230
>UNIPROTKB|P0A7Y0 [details] [associations]
symbol:rnc "RNase III" species:83333 "Escherichia coli
K-12" [GO:0016075 "rRNA catabolic process" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0090305 "nucleic
acid phosphodiester bond hydrolysis" evidence=IEA;IDA] [GO:0046872
"metal ion binding" evidence=IEA] [GO:0019843 "rRNA binding"
evidence=IEA] [GO:0008033 "tRNA processing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0006364 "rRNA
processing" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA;IDA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA;IDA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005524 GO:GO:0005737
EMBL:U00096 EMBL:AP009048 GenomeReviews:AP009048_GR
GenomeReviews:U00096_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0006396 EMBL:D64044 EMBL:U36841
GO:GO:0003725 GO:GO:0008033 GO:GO:0016075 GO:GO:0019843
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 BRENDA:3.1.26.3 PANTHER:PTHR11207 EMBL:M14658
EMBL:X02673 KO:K03685 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK EMBL:X02946 EMBL:M26415 PIR:F65034
RefSeq:NP_417062.1 RefSeq:YP_490795.1 ProteinModelPortal:P0A7Y0
SMR:P0A7Y0 DIP:DIP-48223N IntAct:P0A7Y0 MINT:MINT-1227120
PhosSite:P010446 PaxDb:P0A7Y0 PRIDE:P0A7Y0
EnsemblBacteria:EBESCT00000001804 EnsemblBacteria:EBESCT00000001805
EnsemblBacteria:EBESCT00000015272 GeneID:12931603 GeneID:947033
KEGG:ecj:Y75_p2520 KEGG:eco:b2567 PATRIC:32120533 EchoBASE:EB0850
EcoGene:EG10857 BioCyc:EcoCyc:EG10857-MONOMER
BioCyc:ECOL316407:JW2551-MONOMER BioCyc:MetaCyc:EG10857-MONOMER
Genevestigator:P0A7Y0 Uniprot:P0A7Y0
Length = 226
Score = 135 (52.6 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 39/124 (31%), Positives = 65/124 (52%)
Query: 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYP 1210
+ L+ L Y+F LL +ALTH S + +RLEFLGD++L Y+I LY+++P
Sbjct: 6 INRLQRKLGYTFNHQELLQQALTHRSAS----SKHNERLEFLGDSILSYVIANALYHRFP 61
Query: 1211 GLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL----YKRINITVDSFEKLSL 1266
+ G ++ MR+ V + A + + L + + EL ++R +I D+ E L +
Sbjct: 62 RVDEGDMSRMRATLVRGNTLAELAREFELGECLRLGPGELKSGGFRRESILADTVEAL-I 120
Query: 1267 GSTF 1270
G F
Sbjct: 121 GGVF 124
Score = 90 (36.7 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 27/113 (23%), Positives = 52/113 (46%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFS 1339
L D +E+L G +F+DS +++ + L+ I+P + P L EY Q H
Sbjct: 112 LADTVEALIGGVFLDSDIQTVEKLILNWYQTRLDE-ISPGDKQKDPKTRLQEYLQGRHLP 170
Query: 1340 MKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
+ + ++ G+A T+ Q +G + ++ A++ A ++ LK L
Sbjct: 171 LPTYLVVQVRGEAHDQEFTIHCQVSGLSEPVVGTGSSRRKAEQAAAEQALKKL 223
Score = 80 (33.2 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 21/75 (28%), Positives = 35/75 (46%)
Query: 980 KVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAA 1039
++L+ T + H E LE LGDS L Y + L+ + EG +S + ++
Sbjct: 21 ELLQQALTHRSASSKHNERLEFLGDSILSYVIANALYHRFPRVDEGDMSRMRATLVRGNT 80
Query: 1040 LCKLGCEQKLPGFIR 1054
L +L E +L +R
Sbjct: 81 LAELAREFELGECLR 95
>UNIPROTKB|A4RN08 [details] [associations]
symbol:MPH1 "ATP-dependent DNA helicase MPH1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0005634
GO:GO:0003677 GO:GO:0006281 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 EMBL:CM001232 GO:GO:0008026 eggNOG:COG1111
KO:K14635 OrthoDB:EOG4JHGPV RefSeq:XP_003713523.1
ProteinModelPortal:A4RN08 STRING:A4RN08 EnsemblFungi:MGG_04429T0
GeneID:2678216 KEGG:mgr:MGG_04429 Uniprot:A4RN08
Length = 1102
Score = 130 (50.8 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 33/93 (35%), Positives = 54/93 (58%)
Query: 434 RKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493
+K+Q E + +FR G+ NV+VATSI EEGLD+ +L+I +D S + +Q GR +
Sbjct: 549 QKQQIETIAKFRDGIFNVLVATSIGEEGLDIGQVDLIICYDASSSPIRMLQRMGRTGRKR 608
Query: 494 SDY--LLMVKSGDSTTQSRLE-NYLASGNKMRK 523
+ LL++K + ++ + NY KM+K
Sbjct: 609 AGKITLLLMKGKEEDNYAKAQDNY----EKMQK 637
Score = 90 (36.7 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 24/75 (32%), Positives = 36/75 (48%)
Query: 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175
E + MTPQ L++ L Y I +L++DE H A G + Y ++ EF R
Sbjct: 229 EWEGKRLFFMTPQTLMNDLSKGYADPKRIVLLVVDEAHRATGDYAYVKVI-EFIRRF--- 284
Query: 176 GDSNLPRIFGMTASP 190
S R+ +TA+P
Sbjct: 285 --SKSFRVLALTATP 297
Score = 80 (33.2 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 16/37 (43%), Positives = 24/37 (64%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
R+YQ ++N L NT+V L TG GKT IA ++ ++
Sbjct: 141 RDYQFSIVKNGLFNNTLVALPTGLGKTFIAATVILNF 177
Score = 45 (20.9 bits), Expect = 5.4e-11, Sum P(4) = 5.4e-11
Identities = 12/35 (34%), Positives = 17/35 (48%)
Query: 971 MQNVTIPTIKVLEAITTKKCQEDF----HLESLET 1001
+Q V PT+ V TK+C F H + +ET
Sbjct: 789 LQRVLRPTVHVKHGSYTKRCVRLFKKLSHSQGIET 823
>TIGR_CMR|NSE_0918 [details] [associations]
symbol:NSE_0918 "ribonuclease III" species:222891
"Neorickettsia sennetsu str. Miyayama" [GO:0004525 "ribonuclease
III activity" evidence=ISS] [GO:0006396 "RNA processing"
evidence=ISS] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 EMBL:CP000237 GenomeReviews:CP000237_GR
GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685 HOGENOM:HOG000246809
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_506782.1
ProteinModelPortal:Q2GCL4 STRING:Q2GCL4 GeneID:3931585
KEGG:nse:NSE_0918 PATRIC:22681823 ProtClustDB:CLSK2528151
BioCyc:NSEN222891:GHFU-920-MONOMER Uniprot:Q2GCL4
Length = 222
Score = 164 (62.8 bits), Expect = 1.1e-10, P = 1.1e-10
Identities = 50/140 (35%), Positives = 79/140 (56%)
Query: 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC--YQRLEFLGDAVLDYLITVYLY 1206
+ + L+SLL F++ LLVEALTH P + +C Y+RLEFLGDAVL+ +I LY
Sbjct: 1 MELEELQSLLGVYFKNKDLLVEALTH-----PSVEKCPSYERLEFLGDAVLNLVIASMLY 55
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI-LHASHELYKRINIT--VDSFEK 1263
+ +PG G L+ +SA + + A+ + + L +I L +S E + T +++ +
Sbjct: 56 DLFPGDPEGRLSHRQSALICKNTLAMLARQMNLGDYIRLSSSEEAGGGRDKTSNLENVLE 115
Query: 1264 LSLGSTF---GWESVTSFPK 1280
+G+ F G E+VT F K
Sbjct: 116 ALVGAIFLDAGLETVTCFIK 135
Score = 85 (35.0 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 22/77 (28%), Positives = 37/77 (48%)
Query: 981 VLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAAL 1040
++EA+T ++ E LE LGD+ L + L+ + + EG LS ++ +I L
Sbjct: 20 LVEALTHPSVEKCPSYERLEFLGDAVLNLVIASMLYDLFPGDPEGRLSHRQSALICKNTL 79
Query: 1041 CKLGCEQKLPGFIRTES 1057
L + L +IR S
Sbjct: 80 AMLARQMNLGDYIRLSS 96
Score = 78 (32.5 bits), Expect = 0.00074, Sum P(2) = 0.00074
Identities = 31/115 (26%), Positives = 56/115 (48%)
Query: 1282 LGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMK 1341
L +++E+L GAIF+D+G F R + +++ +P L E Q MK
Sbjct: 110 LENVLEALVGAIFLDAGLETVTCFIKKR-WYGLAVQSDSIEPNPKSTLQELLQAK--GMK 166
Query: 1342 KPVASRI--SGKAAVTV---EVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391
P+ + I SG A + + E++ +G+ T KK ++ A + +L+ L+A
Sbjct: 167 PPIYNVINRSGPAHLPIFEIEIRVDGKKRRAT--GKSKKLGEENAARMMLEELKA 219
>TIGR_CMR|CJE_1807 [details] [associations]
symbol:CJE_1807 "ribonuclease III" species:195099
"Campylobacter jejuni RM1221" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000025 GenomeReviews:CP000025_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 HOGENOM:HOG000246808
OMA:LTHKSCK RefSeq:YP_179777.1 ProteinModelPortal:Q5HSF8
STRING:Q5HSF8 GeneID:3232434 KEGG:cjr:CJE1807 PATRIC:20045436
BioCyc:CJEJ195099:GJC0-1841-MONOMER Uniprot:Q5HSF8
Length = 224
Score = 158 (60.7 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 36/84 (42%), Positives = 53/84 (63%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY--QRLEFLGDAVLDYLITVYLYN 1207
N+ LE L Y F+D +LL+ ALTH S+ + Y +RLEFLGDAVLD ++ YL++
Sbjct: 3 NIEKLERSLTYEFKDKNLLIHALTHKSFK-----KSYNNERLEFLGDAVLDLVVGEYLFH 57
Query: 1208 KYPGLSPGYLTDMRSASVNNDCYA 1231
K+ + G L+ +R+A VN +A
Sbjct: 58 KFAKDAEGDLSKLRAALVNEKSFA 81
Score = 47 (21.6 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 1279 PKALGDIIESLAGAIFVDSG 1298
P L D +E++ GAI +++G
Sbjct: 108 PSILSDALEAIIGAIHLEAG 127
>DICTYBASE|DDB_G0274841 [details] [associations]
symbol:fncM "ATP-dependent DNA helicase"
species:44689 "Dictyostelium discoideum" [GO:0006974 "response to
DNA damage stimulus" evidence=IMP] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851
PROSITE:PS51194 SMART:SM00490 dictyBase:DDB_G0274841 GO:GO:0005524
GO:GO:0003677 GO:GO:0006974 EMBL:AAFI02000012 GO:GO:0004386
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 eggNOG:COG1111
KO:K10896 RefSeq:XP_644014.1 ProteinModelPortal:Q8T145
EnsemblProtists:DDB0217507 GeneID:8619444 KEGG:ddi:DDB_G0274841
InParanoid:Q8T145 Uniprot:Q8T145
Length = 1789
Score = 189 (71.6 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 110/506 (21%), Positives = 211/506 (41%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R YQ + +++A +NT++ L TG GKT IA +L+ +Y + K
Sbjct: 474 REYQFKFIQSAFLENTMICLPTGLGKTFIASILMLNYYHWFPKSK---LVFLVHTKSLVS 530
Query: 83 XXXEAIKMHTDLKVG---KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
EA T + ++ GD + W SK V TPQIL + +
Sbjct: 531 QQIEAFHRDTGIPKSDSIQFTGDTTSKLKRQSLWN---SKR-VFFSTPQILANDIGSGNC 586
Query: 140 KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSE 199
I +++DE H A+G + Y C+ + +L+ + R+ +TA+P S
Sbjct: 587 DPRSICCIVIDEAHRAQGNYDY-CVAIKL---ILKV--NRFFRVLALTATP------GSN 634
Query: 200 QDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH---LADE 256
QK+ + + N ++ + S + T D+ + + + D+
Sbjct: 635 NAAIQKVINNLLISNMELRSEDSADIKPYIHSKKTDVLSIALSDDYKSIIKDYEFFIVDK 694
Query: 257 LAMI-ELKHTRSLENLDLNEAQAELIRKKVSKI--NSTLLYCLSELGVWLALKAAETI-S 312
L ++ E D I +K+ I +++ +Y S + L+A T+ +
Sbjct: 695 LKVLFEFNILNPTTTPD--RVSHSFILEKIKSIQFSNSPVYG-SGGNKFKLLRALVTLQT 751
Query: 313 CYESDFFAWEQLDGFGETIIKKFGS--DASQALVTYVPSGAEWS-IGDDSKFNLDSGLLT 369
Y+ +A ++ G E+ K + DAS + W K ++D+GL+
Sbjct: 752 LYQG--YALLKVHGL-ESFYDKISNLEDASSKTIKAFSKNENWKQFIIKIKKSIDNGLVH 808
Query: 370 EKIVCLIESLLEY---RGVEDIRCIIFVE-RVITAIVLQSLLSELLPRHCTWKT--KYI- 422
+K++ L + L+E+ + +IFV+ R ++ + + K+ K +
Sbjct: 809 DKLIKLNDVLIEHFQSNNPRSSKVMIFVQFRRSVQEIIDFISNNNNGGGGGGKSLIKVMP 868
Query: 423 ----AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478
+ + G++ +K+Q I+ F G +NV+V+T I EEGLD+ +LV+ +D ++
Sbjct: 869 FYGQSATDKGVKGIHKKEQQAILNSFVNGDINVLVSTCIGEEGLDIGEVDLVVCYDVQQS 928
Query: 479 VCSFIQSRGRA-RMQNSDYLLMVKSG 503
Q GR R ++ + ++ G
Sbjct: 929 SLKNTQRTGRTGRKRDGRCIFLITQG 954
Score = 56 (24.8 bits), Expect = 4.1e-10, Sum P(2) = 4.1e-10
Identities = 15/35 (42%), Positives = 17/35 (48%)
Query: 1068 DNSGSYELNDDSLFNGRKIYVTGRKKVKSKT-VAD 1101
D G Y +DDSLF K T R SK +AD
Sbjct: 1015 DGGGDYYEDDDSLFENNKKSTTSRGVKNSKNYLAD 1049
Score = 42 (19.8 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 12/44 (27%), Positives = 23/44 (52%)
Query: 523 KEVLSHASLPCSPLNNHMYGEDFYHVESTGTIATLSSSVSLIYF 566
KE+LS S + ++ + ED H + T + ++S S+ I +
Sbjct: 1071 KEILSKNS-HLNSISTDI--EDIKHSDKTNILISISKSIDAIKY 1111
Score = 38 (18.4 bits), Expect = 2.9e-08, Sum P(2) = 2.9e-08
Identities = 8/21 (38%), Positives = 13/21 (61%)
Query: 1073 YELNDDSLFNGRKIYVTGRKK 1093
Y++ SL N ++ TGRK+
Sbjct: 923 YDVQQSSLKNTQRTGRTGRKR 943
>ASPGD|ASPL0000062874 [details] [associations]
symbol:AN10063 species:162425 "Emericella nidulans"
[GO:0008150 "biological_process" evidence=ND] [GO:0005575
"cellular_component" evidence=ND] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] InterPro:IPR001650
InterPro:IPR006935 Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:BN001308 GO:GO:0003677
GO:GO:0004386 InterPro:IPR003903 SMART:SM00726 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 HOGENOM:HOG000076770
EnsemblFungi:CADANIAT00002426 OMA:YNTIVAT Uniprot:C8VUA7
Length = 971
Score = 137 (53.3 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 36/104 (34%), Positives = 59/104 (56%)
Query: 428 GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487
G + +K Q +I+++F++G N IVATSI EEGLD+ +L++ +D S + +Q G
Sbjct: 571 GSEGMGQKTQLDIIQKFKKGTYNTIVATSIGEEGLDIGEVDLIVCYDSSASPIRMLQRMG 630
Query: 488 RA-RMQNSDYLLMVKSGDSTTQSRLENYL-ASGN--KMRKEVLS 527
R R + + +L++ G ENYL A N KM++ + S
Sbjct: 631 RTGRKRAGNIVLLLMQGKEE-----ENYLKAKDNYEKMQQLIAS 669
Score = 99 (39.9 bits), Expect = 1.1e-09, Sum P(2) = 1.1e-09
Identities = 47/190 (24%), Positives = 74/190 (38%)
Query: 6 MESDTTEE-VSADTLPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLR 64
+ D E V L R+YQ + L N +V L TG GKT IA ++ ++ +
Sbjct: 143 LNQDALETWVYPTNLGKTRDYQFNITQKGLFYNLLVALPTGLGKTFIAATIMLNWLRWTK 202
Query: 65 KPSPXXXXXXXXXXXXXXXXXEAI----KMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH 120
I + T + G+ G+ WK SK
Sbjct: 203 SAQIIFVAPTKPLVAQQISACLRIAGIPRSQTTMLTGE--APPGIR---AEEWK---SKR 254
Query: 121 EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180
V MTPQ L + L+ I +L++DE H A G + Y ++ +F R ++
Sbjct: 255 -VFFMTPQTLTNDLKSGIADPKRIVLLVVDEAHRATGGYAYVEVV-KFLRRFNQSF---- 308
Query: 181 PRIFGMTASP 190
R+ +TA+P
Sbjct: 309 -RVLALTATP 317
>CGD|CAL0005976 [details] [associations]
symbol:MPH1 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0033567 "DNA replication, Okazaki
fragment processing" evidence=IEA] [GO:0000725 "recombinational
repair" evidence=IEA] [GO:0060543 "negative regulation of strand
invasion" evidence=IEA] [GO:0070336 "flap-structured DNA binding"
evidence=IEA] [GO:0043138 "3'-5' DNA helicase activity"
evidence=IEA] InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270
Pfam:PF00271 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
CGD:CAL0005976 GO:GO:0005524 GO:GO:0005634 GO:GO:0003677
GO:GO:0006281 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0008026 eggNOG:COG1111 EMBL:AACQ01000084 EMBL:AACQ01000083
KO:K14635 RefSeq:XP_715573.1 RefSeq:XP_715628.1
ProteinModelPortal:Q5A1A0 STRING:Q5A1A0 GeneID:3642769
GeneID:3642817 KEGG:cal:CaO19.10436 KEGG:cal:CaO19.2919
Uniprot:Q5A1A0
Length = 1187
Score = 147 (56.8 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 36/128 (28%), Positives = 68/128 (53%)
Query: 423 AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482
+ N+ + S+K Q EI+++F++G+ N++VATSI EEGLD+ +L+I +D + +
Sbjct: 567 SSENAQMTGMSQKLQKEIIKKFKKGVFNILVATSIGEEGLDIGEVDLIICYDSTSSPIKN 626
Query: 483 IQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYG 542
IQ GR + +LM+ S S +S+ + + +++ ++ + P H
Sbjct: 627 IQRMGRTGRKRDGKVLMLFS--SNEESKFDKAMGGYEYIQQHIMKGDFIQLRP--QHRMI 682
Query: 543 EDFYHVES 550
D Y E+
Sbjct: 683 PDEYKPEA 690
Score = 102 (41.0 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 47/179 (26%), Positives = 77/179 (43%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQ +E A N +V L TG GKT IA ++ ++ LR P
Sbjct: 138 RDYQYNIVERAFYDNLLVALPTGLGKTFIASTVMLNF---LRW-FPISKIIFMAPTRPLV 193
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKL 141
+ IK + G + + + E+ + +V TPQ++ + L
Sbjct: 194 A--QQIKACCSI-AGIPSSKVAILLDKTRRNRAEIWNSRQVFFTTPQVVENDLASGVVNP 250
Query: 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
I +L++DE H A+G + Y ++ +F +R DS RI +TA+P S V +Q
Sbjct: 251 KSIALLVIDEAHRAKGNYSYNNVV-KFINRF---SDSY--RILALTATPA-SDVEGVQQ 302
Score = 37 (18.1 bits), Expect = 1.3e-09, Sum P(3) = 1.3e-09
Identities = 7/18 (38%), Positives = 11/18 (61%)
Query: 1247 SHELYKRINITVDSFEKL 1264
+ ELYK I +DS + +
Sbjct: 1105 TRELYKNYYIAIDSSDDI 1122
>MGI|MGI:2442306 [details] [associations]
symbol:Fancm "Fanconi anemia, complementation group M"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=ISO] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0003682
"chromatin binding" evidence=ISO] [GO:0004386 "helicase activity"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0016787 "hydrolase activity"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=ISO] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=ISO] [GO:0071821 "FANCM-MHF complex" evidence=ISO]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00690
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 MGI:MGI:2442306
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 KO:K10896 OMA:QMGMRSL
OrthoDB:EOG4C5CHK Gene3D:3.40.50.10130 EMBL:AK050306 EMBL:AK053715
EMBL:AK084697 EMBL:AK086395 EMBL:AK173211 IPI:IPI00471330
IPI:IPI00654953 IPI:IPI00654989 IPI:IPI00655127 RefSeq:NP_849243.2
UniGene:Mm.374847 ProteinModelPortal:Q8BGE5 SMR:Q8BGE5
STRING:Q8BGE5 PhosphoSite:Q8BGE5 PRIDE:Q8BGE5
Ensembl:ENSMUST00000058889 GeneID:104806 KEGG:mmu:104806
UCSC:uc007nrc.1 UCSC:uc007nrd.1 UCSC:uc007nrf.1 UCSC:uc011ymf.1
GeneTree:ENSGT00640000091530 InParanoid:Q8BGE5 NextBio:357300
Bgee:Q8BGE5 CleanEx:MM_FANCM Genevestigator:Q8BGE5
GermOnline:ENSMUSG00000055884 Uniprot:Q8BGE5
Length = 2021
Score = 126 (49.4 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 42/145 (28%), Positives = 63/145 (43%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL+ +AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 80 RDYQLDISRSALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPS-GKVVFMAPTKPLVT 136
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN 142
EA H + +M KE S VL +TPQ++++ L
Sbjct: 137 QQMEAC-FHVMGIPQSHMAEM-TGSTQAVNRKEIWSSRRVLFLTPQVMVNDLTRGAVPAT 194
Query: 143 MIKVLILDECHHARGKHQYACIMTE 167
+K L++DE H A G + Y ++ E
Sbjct: 195 HVKCLVVDEAHKALGNYAYCQVVRE 219
Score = 125 (49.1 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 39/125 (31%), Positives = 69/125 (55%)
Query: 407 LSELLPRHC-TWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEEGLD 463
++E+L +H + G+ SG + ++K+Q ++V +FR G N +V+T + EEGLD
Sbjct: 477 IAEMLLQHRPVIRVMTFVGHASGKNTKGFTQKEQLQVVRQFRDGGYNTLVSTCVGEEGLD 536
Query: 464 VQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNSDYLLMVKSG--DST---TQSRLEN-YLA 516
+ +L+I FD ++ IQ GR R + ++++ G + T +QS +N Y A
Sbjct: 537 IGEVDLIICFDAQKSPIRLIQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKKNIYKA 596
Query: 517 -SGNK 520
SGN+
Sbjct: 597 ISGNR 601
Score = 42 (19.8 bits), Expect = 1.7e-09, Sum P(3) = 1.7e-09
Identities = 17/68 (25%), Positives = 26/68 (38%)
Query: 1091 RKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIG-IKVDFVNVPYQRQFQVH-AERL 1148
+ SKT A +++ L GG+ + R+G + Q VH + R
Sbjct: 1312 KSHASSKTGAHMLKTLDSTKEKAGGQGFKMALNPRLGHLGFSVEETKSSDQVFVHQSPRR 1371
Query: 1149 VNVRHLES 1156
V HL S
Sbjct: 1372 TEVEHLTS 1379
>SGD|S000001441 [details] [associations]
symbol:MPH1 "3'-5' DNA helicase involved in error-free bypass
of DNA lesions" species:4932 "Saccharomyces cerevisiae" [GO:0006281
"DNA repair" evidence=IEA] [GO:0060543 "negative regulation of
strand invasion" evidence=IMP;IDA] [GO:0003677 "DNA binding"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA;IDA] [GO:0033567
"DNA replication, Okazaki fragment processing" evidence=IGI]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0036297
"interstrand cross-link repair" evidence=IGI] [GO:0070336
"flap-structured DNA binding" evidence=IDA] [GO:0043138 "3'-5' DNA
helicase activity" evidence=IDA] [GO:0006974 "response to DNA
damage stimulus" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0000725 "recombinational repair"
evidence=IMP] InterPro:IPR001650 InterPro:IPR006935 Pfam:PF00271
Pfam:PF04851 PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490
SGD:S000001441 GO:GO:0005524 GO:GO:0005634 EMBL:BK006942
EMBL:X79743 EMBL:Z38062 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0036297 GO:GO:0000725 eggNOG:COG1111
GO:GO:0033567 GO:GO:0043138 GeneTree:ENSGT00640000091530 KO:K14635
OrthoDB:EOG4JHGPV PIR:S48436 RefSeq:NP_012267.1
ProteinModelPortal:P40562 SMR:P40562 DIP:DIP-5016N IntAct:P40562
MINT:MINT-493277 STRING:P40562 PaxDb:P40562 PeptideAtlas:P40562
EnsemblFungi:YIR002C GeneID:854818 KEGG:sce:YIR002C CYGD:YIR002c
HOGENOM:HOG000066122 OMA:KNREEIW NextBio:977660
Genevestigator:P40562 GermOnline:YIR002C GO:GO:0070336
GO:GO:0060543 Uniprot:P40562
Length = 993
Score = 134 (52.2 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 31/88 (35%), Positives = 51/88 (57%)
Query: 429 IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
I ++K Q E++ F++G NV+V TSI EEGLD+ +L+I +D + + IQ GR
Sbjct: 548 ISGMNQKMQKEVIHNFKKGEYNVLVCTSIGEEGLDIGEVDLIICYDTTSSPIKNIQRMGR 607
Query: 489 A-RMQNSDYLLMVKSGDSTTQSR-LENY 514
R ++ +L+ S +S R +E+Y
Sbjct: 608 TGRKRDGKIVLLFSSNESYKFERAMEDY 635
Score = 99 (39.9 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 43/170 (25%), Positives = 72/170 (42%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQ + +L QNT+ + TG GKT IA ++ +Y +K
Sbjct: 88 RDYQYTIVHKSLFQNTLCAIPTGMGKTFIASTVMLNYFRWTKKAK------IIFTAPTRP 141
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATW-KEEM-SKHEVLVMTPQILLDGLRLSYFK 140
+ IK L + D D + +EE+ + V TPQ++ + L+
Sbjct: 142 LVAQQIK--ACLGITGIPSDQTAILLDKSRKNREEIWANKRVFFATPQVVENDLKRGVLD 199
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
I L++DE H A G Y ++ +F R +S+ R+ +TA+P
Sbjct: 200 PKDIVCLVIDEAHRATGSSAYTNVV-KFIDRF----NSSY-RLLALTATP 243
>UNIPROTKB|Q8IYD8 [details] [associations]
symbol:FANCM "Fanconi anemia group M protein" species:9606
"Homo sapiens" [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IDA] [GO:0003682 "chromatin binding" evidence=IDA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071821 "FANCM-MHF
complex" evidence=IDA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IMP] [GO:0031297 "replication
fork processing" evidence=IMP] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0006281 "DNA repair" evidence=TAS]
Reactome:REACT_216 InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00690 PROSITE:PS51194 SMART:SM00490 SMART:SM00891
GO:GO:0005524 GO:GO:0003677 GO:GO:0006281 GO:GO:0003682
GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
Orphanet:84 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
PDB:4DRB PDBsum:4DRB InterPro:IPR010994 SUPFAM:SSF47781
EMBL:DQ140356 EMBL:AK093422 EMBL:BC036056 EMBL:AB046816
IPI:IPI00176581 IPI:IPI00217755 RefSeq:NP_065988.1
UniGene:Hs.509229 PDB:4DAY PDBsum:4DAY ProteinModelPortal:Q8IYD8
SMR:Q8IYD8 IntAct:Q8IYD8 STRING:Q8IYD8 PhosphoSite:Q8IYD8
DMDM:78099254 PaxDb:Q8IYD8 PRIDE:Q8IYD8 DNASU:57697
Ensembl:ENST00000267430 Ensembl:ENST00000556036 GeneID:57697
KEGG:hsa:57697 UCSC:uc001wwc.2 UCSC:uc001wwd.4 CTD:57697
GeneCards:GC14P045605 HGNC:HGNC:23168 MIM:609644 MIM:614087
neXtProt:NX_Q8IYD8 PharmGKB:PA134943156 eggNOG:COG1948
HOGENOM:HOG000112498 HOVERGEN:HBG081520 InParanoid:Q8IYD8 KO:K10896
OMA:QMGMRSL OrthoDB:EOG4C5CHK GenomeRNAi:57697 NextBio:64551
ArrayExpress:Q8IYD8 Bgee:Q8IYD8 CleanEx:HS_FANCM
Genevestigator:Q8IYD8 GermOnline:ENSG00000187790
Gene3D:3.40.50.10130 Uniprot:Q8IYD8
Length = 2048
Score = 127 (49.8 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 33/124 (26%), Positives = 65/124 (52%)
Query: 407 LSELLPRHCTW-KTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEEGLD 463
++E+L +H + G+ SG + ++K+Q E+V++FR G N +V+T + EEGLD
Sbjct: 492 IAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLD 551
Query: 464 VQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRK 523
+ +L+I FD ++ +Q GR + ++++ S + R+ N S +
Sbjct: 552 IGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILS--EGREERIYNQSQSNKRSIY 609
Query: 524 EVLS 527
+ +S
Sbjct: 610 KAIS 613
Score = 121 (47.7 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 50/178 (28%), Positives = 79/178 (44%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPS-GKVVFMAPTKPLVT 148
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN 142
EA + + +M +T KE VL +TPQ++++ L
Sbjct: 149 QQIEACYQVMGIPQS-HMAEM-TGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 143 MIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
IK L++DE H A G + Y ++ E L++ +N RI ++A+P S + + +Q
Sbjct: 207 EIKCLVIDEAHKALGNYAYCQVVRE----LVKY--TNHFRILALSATP-GSDIKAVQQ 257
Score = 52 (23.4 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 22/132 (16%), Positives = 50/132 (37%)
Query: 545 FYHVESTGTIAT--LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPI 602
F +S ++ T + + + +++ C +D K K +GI + N+
Sbjct: 1912 FRRTKSYDSLLTTLIGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHVPTVVNSNKS 1970
Query: 603 QTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIY 662
+ + +I + L C + + + ++ L +I + ++ E Y H ++
Sbjct: 1971 EALQFYLSIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVF 2030
Query: 663 FPPELVNQSPQD 674
L N QD
Sbjct: 2031 DIQMLPNDLNQD 2042
Score = 40 (19.1 bits), Expect = 2.4e-09, Sum P(4) = 2.4e-09
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK 284
Y ++ L L +ELA I+ + + LE+ + Q ++ ++
Sbjct: 280 YSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRR 324
>TIGR_CMR|BA_3987 [details] [associations]
symbol:BA_3987 "ribonuclease III" species:198094 "Bacillus
anthracis str. Ames" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE016879
EMBL:AE017334 EMBL:AE017225 GenomeReviews:AE016879_GR
GenomeReviews:AE017225_GR GenomeReviews:AE017334_GR GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
GO:GO:0016075 GO:GO:0019843 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
RefSeq:NP_846229.1 RefSeq:YP_020627.1 RefSeq:YP_029951.1
ProteinModelPortal:Q81WI8 DNASU:1087539
EnsemblBacteria:EBBACT00000008054 EnsemblBacteria:EBBACT00000016917
EnsemblBacteria:EBBACT00000023512 GeneID:1087539 GeneID:2816770
GeneID:2849362 KEGG:ban:BA_3987 KEGG:bar:GBAA_3987 KEGG:bat:BAS3700
HOGENOM:HOG000246808 OMA:LTHKSCK
BioCyc:BANT260799:GJAJ-3758-MONOMER
BioCyc:BANT261594:GJ7F-3875-MONOMER Uniprot:Q81WI8
Length = 245
Score = 148 (57.2 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 31/71 (43%), Positives = 46/71 (64%)
Query: 1158 LNYSFRDPSLLVEALTHGSYMLPEIPRCYQ---RLEFLGDAVLDYLITVYLYNKYPGLSP 1214
+ +F D LL++A TH SY+ + ++ RLEFLGDAVL+ ++ YL+ KYP +S
Sbjct: 26 IGITFTDEKLLIQAFTHSSYVNEHRKKPHEDNERLEFLGDAVLELTVSQYLFQKYPTMSE 85
Query: 1215 GYLTDMRSASV 1225
G LT +R+A V
Sbjct: 86 GELTKLRAAIV 96
Score = 59 (25.8 bits), Expect = 3.7e-09, Sum P(2) = 3.7e-09
Identities = 12/38 (31%), Positives = 22/38 (57%)
Query: 1279 PKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMI 1316
P L D+ E+ GA+++D G E V+ ++ ++ P I
Sbjct: 129 PALLADVFEAFIGALYLDQGL--ETVWGFLKEIVYPKI 164
>UNIPROTKB|H0YJZ6 [details] [associations]
symbol:DICER1 "Endoribonuclease Dicer" species:9606 "Homo
sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004525
"ribonuclease III activity" evidence=IEA] [GO:0006396 "RNA
processing" evidence=IEA] InterPro:IPR000999 Pfam:PF00636
PROSITE:PS50142 SMART:SM00535 GO:GO:0003723 GO:GO:0006396
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 EMBL:AL356017
EMBL:AL390254 HGNC:HGNC:17098 ChiTaRS:DICER1
Ensembl:ENST00000532939 Uniprot:H0YJZ6
Length = 394
Score = 114 (45.2 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 28/73 (38%), Positives = 41/73 (56%)
Query: 1007 LKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKM-WII 1065
LK+A + LF TY + HEG LS + + +SN L +LG ++ LP + FDP + W+
Sbjct: 2 LKHAITTYLFCTYPDAHEGRLSYMRSKKVSNCNLYRLGKKKGLPSRMVVSIFDPPVNWLP 61
Query: 1066 PGDNSGSYELNDD 1078
PG Y +N D
Sbjct: 62 PG-----YVVNQD 69
Score = 87 (35.7 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 16/37 (43%), Positives = 26/37 (70%)
Query: 1094 VKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIKV 1130
+ K++AD VEAL+G +L++ GE +FL +G+KV
Sbjct: 233 IADKSIADCVEALLGCYLTSCGERAAQLFLCSLGLKV 269
Score = 61 (26.5 bits), Expect = 6.9e-09, Sum P(3) = 6.9e-09
Identities = 10/25 (40%), Positives = 17/25 (68%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSY 1177
+ E +NY F++ + L++A TH SY
Sbjct: 347 NFEKKINYRFKNKAYLLQAFTHASY 371
>UNIPROTKB|B2RTQ9 [details] [associations]
symbol:FANCM "FANCM protein" species:9606 "Homo sapiens"
[GO:0003677 "DNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0006259 "DNA metabolic process"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 UniGene:Hs.509229
HGNC:HGNC:23168 HOVERGEN:HBG081520 Gene3D:3.40.50.10130
EMBL:AL121809 EMBL:BC140776 EMBL:BC144511 IPI:IPI01014004
SMR:B2RTQ9 STRING:B2RTQ9 Ensembl:ENST00000542564 UCSC:uc010anf.3
Uniprot:B2RTQ9
Length = 2022
Score = 127 (49.8 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 33/124 (26%), Positives = 65/124 (52%)
Query: 407 LSELLPRHCTW-KTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEEGLD 463
++E+L +H + G+ SG + ++K+Q E+V++FR G N +V+T + EEGLD
Sbjct: 466 IAEMLSQHQPIIRVMTFVGHASGKSTKGFTQKEQLEVVKQFRDGGYNTLVSTCVGEEGLD 525
Query: 464 VQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRK 523
+ +L+I FD ++ +Q GR + ++++ S + R+ N S +
Sbjct: 526 IGEVDLIICFDSQKSPIRLVQRMGRTGRKRQGRIVIILS--EGREERIYNQSQSNKRSIY 583
Query: 524 EVLS 527
+ +S
Sbjct: 584 KAIS 587
Score = 115 (45.5 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 43/151 (28%), Positives = 63/151 (41%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 92 RDYQLHISRAALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPS-GKVVFMAPTKPLVT 148
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN 142
EA + + +M +T KE VL +TPQ++++ L
Sbjct: 149 QQIEACYQVMGIPQS-HMAEM-TGSTQASTRKEIWCSKRVLFLTPQVMVNDLSRGACPAA 206
Query: 143 MIKVLILDECHHARGKHQYACIMTEFYHRLL 173
IK L++DE H A G + Y + + LL
Sbjct: 207 EIKCLVIDEAHKALGNYAYCQAVQQVITNLL 237
Score = 52 (23.4 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 22/132 (16%), Positives = 50/132 (37%)
Query: 545 FYHVESTGTIAT--LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPI 602
F +S ++ T + + + +++ C +D K K +GI + N+
Sbjct: 1886 FRRTKSYDSLLTTLIGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHVPTVVNSNKS 1944
Query: 603 QTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIY 662
+ + +I + L C + + + ++ L +I + ++ E Y H ++
Sbjct: 1945 EALQFYLSIPNISYITALNMCHQFSSVKRMANSSLQEISMYAQVTHQKAEEIYRYIHYVF 2004
Query: 663 FPPELVNQSPQD 674
L N QD
Sbjct: 2005 DIQMLPNDLNQD 2016
Score = 40 (19.1 bits), Expect = 8.7e-09, Sum P(4) = 8.7e-09
Identities = 10/45 (22%), Positives = 22/45 (48%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK 284
Y ++ L L +ELA I+ + + LE+ + Q ++ ++
Sbjct: 254 YSHERKVEKLIVPLGEELAAIQKTYIQILESFARSLIQRNVLMRR 298
>UNIPROTKB|I3LJY5 [details] [associations]
symbol:LOC100737466 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR011545
Pfam:PF00270 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 Ensembl:ENSSSCT00000022741 OMA:CKRAVDE
Uniprot:I3LJY5
Length = 319
Score = 164 (62.8 bits), Expect = 1.0e-08, P = 1.0e-08
Identities = 52/204 (25%), Positives = 92/204 (45%)
Query: 4 VSMESDTTEEVSADTLPFA-RNYQLE-ALENALKQNTIVFLETGSGKTLIAIMLLRSYAY 61
+S S ++ E P R YQLE AL +NTI+ TG GKT +++++ +
Sbjct: 75 LSQNSCSSSEAPHTYSPLKPRKYQLELALPAQNGKNTIICAPTGCGKTFVSLLICEHHLK 134
Query: 62 LLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVG-KYWGDMGVDFWDGATWKEEMSKH 120
+ H + ++G K G G D ++ + +
Sbjct: 135 KFPRGRKGKVVFFAIQLPVYEQQKSVFSKHFE-RLGYKVAGISGATS-DTVCVEQIVENN 192
Query: 121 EVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSN 179
+++++TPQIL++ L L++ ++I DECH+ +H Y IM + R L +
Sbjct: 193 DIIILTPQILVNCLTNGTIPSLSVFTLMIFDECHNTSKQHPYNVIMFNYLDRKLGGSSDS 252
Query: 180 LPRIFGMTAS----PIKSKVSSSE 199
LP++ G+TAS K+K ++E
Sbjct: 253 LPQVIGLTASVGVGDAKNKAEATE 276
>TIGR_CMR|APH_1149 [details] [associations]
symbol:APH_1149 "ribonuclease III" species:212042
"Anaplasma phagocytophilum HZ" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000235 GenomeReviews:CP000235_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:YP_505691.1 HSSP:Q9X0I6 ProteinModelPortal:Q2GIW0
STRING:Q2GIW0 GeneID:3930479 KEGG:aph:APH_1149 PATRIC:20951072
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
BioCyc:APHA212042:GHPM-1155-MONOMER TIGRFAMs:TIGR02191
Uniprot:Q2GIW0
Length = 236
Score = 124 (48.7 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 31/66 (46%), Positives = 39/66 (59%)
Query: 1160 YSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTD 1219
Y F+D LL A+TH S + E Y+RLEFLGDAVL +++ LY +P S G LT
Sbjct: 22 YRFQDHELLKTAVTHPS-IAAERYASYERLEFLGDAVLGLVVSEMLYTLFPDDSEGLLTK 80
Query: 1220 MRSASV 1225
R A V
Sbjct: 81 KRIALV 86
Score = 81 (33.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 35/113 (30%), Positives = 53/113 (46%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFS 1339
L + +E+L GAI+VD G R + Q +PL + +T L E+ Q ++F+
Sbjct: 122 LENALEALIGAIYVDGGLESVRHFILQHWKPLATNLA--DTPLQDAKTALQEWAQGHNFA 179
Query: 1340 MKKPVASRISG--KAAV-TVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
+ SG A V TVEV NG+ T KK A+ A K +L+ +
Sbjct: 180 IPSYRLINKSGLEHAPVFTVEVTVNGQRVHAT--GCKKKYAEIAAAKLMLEKV 230
>TIGR_CMR|SO_1348 [details] [associations]
symbol:SO_1348 "ribonuclease III" species:211586
"Shewanella oneidensis MR-1" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE014299 GenomeReviews:AE014299_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 RefSeq:NP_716968.1 ProteinModelPortal:Q8EH81
GeneID:1169169 KEGG:son:SO_1348 PATRIC:23522350 Uniprot:Q8EH81
Length = 226
Score = 138 (53.6 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 40/129 (31%), Positives = 68/129 (52%)
Query: 1146 ERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYL 1205
E + N+ L L Y F++ LL +ALTH S + +RLEFLGD++L +I+ L
Sbjct: 2 EPIKNLPRLCRTLGYEFKNLDLLTQALTHRS----AANKHNERLEFLGDSILSIVISDAL 57
Query: 1206 YNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL----YKRINITVDSF 1261
Y+++P + G L+ MR+ V D L + L ++ EL ++R +I D+
Sbjct: 58 YHQFPKATEGDLSRMRATLVRGDTLTLIAQAFKLGDYLFLGPGELKSGGFRRESILADAV 117
Query: 1262 EKLSLGSTF 1270
E + +G+ +
Sbjct: 118 EAI-IGAIY 125
Score = 60 (26.2 bits), Expect = 2.4e-08, Sum P(2) = 2.4e-08
Identities = 31/119 (26%), Positives = 54/119 (45%)
Query: 1282 LGDIIESLAGAIFVDSG---CNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHF 1338
L D +E++ GAI++DS C + ++ L E I P + L EY Q
Sbjct: 113 LADAVEAIIGAIYLDSDLEVCRQLLLNWYAERLAE--IQPGINQKDAKTLLQEYLQ---- 166
Query: 1339 SMKKPVAS----RISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390
+KKP+ I G A TVE + + + + ++ A+++A +VL+ L+
Sbjct: 167 GLKKPLPDYQVINIEGDAHDQTFTVECRIDDLSQSVIGVASSRRKAEQIAAAQVLELLK 225
>UNIPROTKB|E2RNF7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0071821 "FANCM-MHF complex" evidence=IEA]
[GO:0043240 "Fanconi anaemia nuclear complex" evidence=IEA]
[GO:0031297 "replication fork processing" evidence=IEA] [GO:0003682
"chromatin binding" evidence=IEA] [GO:0000712 "resolution of
meiotic recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
KO:K10896 Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 RefSeq:XP_537429.2 Ensembl:ENSCAFT00000022327
GeneID:480307 KEGG:cfa:480307 Uniprot:E2RNF7
Length = 2047
Score = 124 (48.7 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEE 460
+Q + LL + G+ SG + ++K+Q E+V++FR G N +V+T + EE
Sbjct: 489 VQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEE 548
Query: 461 GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMV 500
GLD+ +L+I FD ++ +Q GR + ++++
Sbjct: 549 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVI 588
Score = 91 (37.1 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 112 TWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171
T KE VL +TPQ++++ L IK L++DE H A G + Y ++ E +
Sbjct: 176 TRKEIWRSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELFKY 235
Query: 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
+N RI ++A+P S + + +Q
Sbjct: 236 ------TNHFRILALSATP-GSDIKAIQQ 257
Score = 77 (32.2 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
R+YQL+ +L NT+V L TG GKT IA +++ ++
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF 128
Score = 44 (20.5 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 21/131 (16%), Positives = 49/131 (37%)
Query: 545 FYHVESTGTIAT--LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPI 602
F +S + T + + + +++ C +D K K +GI + N
Sbjct: 1911 FRRTKSYDNLLTTLIGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHIPTVVNRSKC 1969
Query: 603 QTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIY 662
+ + +I + L C + + +T++ +I + ++ E Y H ++
Sbjct: 1970 EALQFYLSIPHISYITALNMCHRFSSVKRMTNSSPQEISMYAQVTHQKAEEIYRYIHYVF 2029
Query: 663 ---FPPELVNQ 670
P+ +NQ
Sbjct: 2030 NMQMLPDGLNQ 2040
Score = 40 (19.1 bits), Expect = 6.8e-08, Sum P(5) = 6.8e-08
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 1329 LTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKS 1388
L+E N FS + R V++Q+ TF+D+ +K +E +
Sbjct: 1341 LSESNTLNSFSKNRKEVPRTPDSNKGKVDLQSFKETLNSTFVDSGLHV-EKAKSREEINF 1399
Query: 1389 LRASFP 1394
L++ P
Sbjct: 1400 LQSYHP 1405
Score = 38 (18.4 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK 284
Y ++ L L +ELA I+ + + LE + Q ++ ++
Sbjct: 280 YSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRNILMRR 324
>UNIPROTKB|J9P777 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
OMA:QMGMRSL Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530
EMBL:AAEX03005706 Ensembl:ENSCAFT00000046644 Uniprot:J9P777
Length = 2048
Score = 124 (48.7 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEE 460
+Q + LL + G+ SG + ++K+Q E+V++FR G N +V+T + EE
Sbjct: 489 VQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEE 548
Query: 461 GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMV 500
GLD+ +L+I FD ++ +Q GR + ++++
Sbjct: 549 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVI 588
Score = 91 (37.1 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 26/89 (29%), Positives = 44/89 (49%)
Query: 112 TWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171
T KE VL +TPQ++++ L IK L++DE H A G + Y ++ E +
Sbjct: 176 TRKEIWRSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAYCQVVRELFKY 235
Query: 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
+N RI ++A+P S + + +Q
Sbjct: 236 ------TNHFRILALSATP-GSDIKAIQQ 257
Score = 77 (32.2 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
R+YQL+ +L NT+V L TG GKT IA +++ ++
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF 128
Score = 44 (20.5 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 21/131 (16%), Positives = 49/131 (37%)
Query: 545 FYHVESTGTIAT--LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPI 602
F +S + T + + + +++ C +D K K +GI + N
Sbjct: 1912 FRRTKSYDNLLTTLIGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHIPTVVNRSKC 1970
Query: 603 QTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIY 662
+ + +I + L C + + +T++ +I + ++ E Y H ++
Sbjct: 1971 EALQFYLSIPHISYITALNMCHRFSSVKRMTNSSPQEISMYAQVTHQKAEEIYRYIHYVF 2030
Query: 663 ---FPPELVNQ 670
P+ +NQ
Sbjct: 2031 NMQMLPDGLNQ 2041
Score = 40 (19.1 bits), Expect = 6.8e-08, Sum P(5) = 6.8e-08
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 1329 LTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKS 1388
L+E N FS + R V++Q+ TF+D+ +K +E +
Sbjct: 1341 LSESNTLNSFSKNRKEVPRTPDSNKGKVDLQSFKETLNSTFVDSGLHV-EKAKSREEINF 1399
Query: 1389 LRASFP 1394
L++ P
Sbjct: 1400 LQSYHP 1405
Score = 38 (18.4 bits), Expect = 2.8e-08, Sum P(5) = 2.8e-08
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK 284
Y ++ L L +ELA I+ + + LE + Q ++ ++
Sbjct: 280 YSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRNILMRR 324
>UNIPROTKB|F1SI11 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0071821 "FANCM-MHF complex" evidence=IEA] [GO:0043240
"Fanconi anaemia nuclear complex" evidence=IEA] [GO:0031297
"replication fork processing" evidence=IEA] [GO:0003682 "chromatin
binding" evidence=IEA] [GO:0000712 "resolution of meiotic
recombination intermediates" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0031297 GO:GO:0008026 GO:GO:0000712 GO:GO:0071821
GO:GO:0043240 InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000005515 Uniprot:F1SI11
Length = 2054
Score = 130 (50.8 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 37/125 (29%), Positives = 68/125 (54%)
Query: 407 LSELLPRHCTW-KTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEEGLD 463
++E+L RH + G+ SG + ++K+Q E+V++FR G N +V+T + EEGLD
Sbjct: 501 IAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLD 560
Query: 464 VQSCNLVIMFDPSRTVCSFIQSRGRA--RMQNSDYLLMVKSGDSTTQSRLEN-----YLA 516
+ +L+I FD ++ +Q GR + Q +++ + + T ++ ++ Y A
Sbjct: 561 IGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKA 620
Query: 517 -SGNK 520
SGNK
Sbjct: 621 ISGNK 625
Score = 119 (46.9 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 50/180 (27%), Positives = 79/180 (43%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPSGKVVFMAPTKPLVTQ 158
Query: 83 XXXEAIKMH--TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
++ + + G V F T KE VL +TPQ++++ L
Sbjct: 159 QIEACYRVMGIPQSHMAEMTGSTQV-F----TRKEIWDSKRVLFLTPQVMVNDLSRGACP 213
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ 200
IK L++DE H A G + Y ++ E L++ +N RI ++A+P S + + +Q
Sbjct: 214 AAEIKCLVIDEAHRALGNYAYCQVVRE----LVKY--TNHFRILALSATP-GSDIKAVQQ 266
Score = 42 (19.8 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 20/108 (18%), Positives = 42/108 (38%)
Query: 557 LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGIC--TLYLPNNCP-IQTVIAQGNIKT 613
+ + + +++ C +D K K +GI T+ N C +Q ++ NI
Sbjct: 1932 IGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISY 1990
Query: 614 LKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPI 661
+ L C + + +T++ +I + ++ E Y H I
Sbjct: 1991 I---TALNMCHQFSSVKKMTNSSPQEISMYAQVTHQKAEEIYRYIHYI 2035
Score = 40 (19.1 bits), Expect = 5.5e-08, Sum P(4) = 5.5e-08
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1075 LNDDSLFNGRKIYVTGRKKVKSK 1097
+++DS +G K Y T R+ VK K
Sbjct: 1634 ISEDSFASGSKKYKT-RRAVKLK 1655
Score = 37 (18.1 bits), Expect = 3.5e-08, Sum P(4) = 3.5e-08
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLE 269
Y ++ L L++ELA I+ + + LE
Sbjct: 289 YSHERRVEKLVVPLSEELAAIQKAYIQILE 318
>DICTYBASE|DDB_G0274077 [details] [associations]
symbol:drnA-2 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 128 (50.1 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAVLD+++ YL++KY GYLT+ +S VNN+ LS + +K+I
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNE--NLSKILKS-NKNIFSP 1158
Query: 1247 SHE-LYKRINI 1256
S + +K ++
Sbjct: 1159 SQQDSFKHFSV 1169
Score = 97 (39.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
+ LE LGDS LK +S LFK + N EGLLS K+E N L +L
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTEL 972
Score = 46 (21.3 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 142 NMIKVLILDECHHARGKH 159
N K L+LD C H+RGK+
Sbjct: 745 NSEKKLLLD-CFHSRGKN 761
Score = 43 (20.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1096 SKTVADVVEALIGA-FLSTG 1114
SK AD++EA IGA ++ G
Sbjct: 991 SKPHADLIEAFIGAIYIECG 1010
Score = 39 (18.8 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1056 ESFDPKMWIIPGDNSGSYELNDDSLFNG 1083
+SFD WII SY +D+ ++ G
Sbjct: 1013 DSFD---WIIKWIFDNSYYGSDNKIYGG 1037
>DICTYBASE|DDB_G0273051 [details] [associations]
symbol:drnA-1 "putative RNAse III DrnA" species:44689
"Dictyostelium discoideum" [GO:0006396 "RNA processing"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR000999 InterPro:IPR001159 Pfam:PF00035
Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142
SMART:SM00358 SMART:SM00535 InterPro:IPR014720
dictyBase:DDB_G0274077 dictyBase:DDB_G0273051 Gene3D:3.30.160.20
GenomeReviews:CM000151_GR GO:GO:0005622 EMBL:AAFI02000011
EMBL:AAFI02000009 GO:GO:0006396 GO:GO:0003725 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
ProtClustDB:CLSZ2431100 EMBL:AJ314911 RefSeq:XP_644397.1
RefSeq:XP_645016.1 ProteinModelPortal:Q95ZG5
EnsemblProtists:DDB0220441 EnsemblProtists:DDB0238743
GeneID:8618693 GeneID:8619283 KEGG:ddi:DDB_G0273051
KEGG:ddi:DDB_G0274077 Uniprot:Q95ZG5
Length = 1203
Score = 128 (50.1 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 29/71 (40%), Positives = 45/71 (63%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAVLD+++ YL++KY GYLT+ +S VNN+ LS + +K+I
Sbjct: 1102 ERLEFLGDAVLDFIVADYLFSKYKEQQEGYLTESKSKLVNNE--NLSKILKS-NKNIFSP 1158
Query: 1247 SHE-LYKRINI 1256
S + +K ++
Sbjct: 1159 SQQDSFKHFSV 1169
Score = 97 (39.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 23/47 (48%), Positives = 28/47 (59%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
+ LE LGDS LK +S LFK + N EGLLS K+E N L +L
Sbjct: 926 QRLEFLGDSVLKITSSLYLFKKFDNEGEGLLSKKREFYTKNEYLTEL 972
Score = 46 (21.3 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 142 NMIKVLILDECHHARGKH 159
N K L+LD C H+RGK+
Sbjct: 745 NSEKKLLLD-CFHSRGKN 761
Score = 43 (20.2 bits), Expect = 9.0e-08, Sum P(4) = 9.0e-08
Identities = 10/20 (50%), Positives = 14/20 (70%)
Query: 1096 SKTVADVVEALIGA-FLSTG 1114
SK AD++EA IGA ++ G
Sbjct: 991 SKPHADLIEAFIGAIYIECG 1010
Score = 39 (18.8 bits), Expect = 2.2e-07, Sum P(4) = 2.2e-07
Identities = 10/28 (35%), Positives = 15/28 (53%)
Query: 1056 ESFDPKMWIIPGDNSGSYELNDDSLFNG 1083
+SFD WII SY +D+ ++ G
Sbjct: 1013 DSFD---WIIKWIFDNSYYGSDNKIYGG 1037
>UNIPROTKB|Q9KPB2 [details] [associations]
symbol:rnc "Ribonuclease 3" species:243277 "Vibrio cholerae
O1 biovar El Tor str. N16961" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 125 (49.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
L S L Y+F++ LL ALTH S + +RLEFLGD++L ++I LY ++P ++
Sbjct: 8 LTSKLGYTFKETELLNLALTHRSAN----GKHNERLEFLGDSILSFVIADELYRRFPKVN 63
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL----YKRINITVDSFEKLSLGST 1269
G ++ MR+ V + A + L ++ EL ++R +I D+ E + +G+
Sbjct: 64 EGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAI-IGAI 122
Query: 1270 F 1270
+
Sbjct: 123 Y 123
Score = 70 (29.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 28/113 (24%), Positives = 47/113 (41%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFS 1339
L D +E++ GAI++DS R +V + LE I P + P L E+ Q
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRKP 169
Query: 1340 MKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
+ + I G+A TV + G ++ A++ A + L+ L
Sbjct: 170 LPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|VC_2461 [details] [associations]
symbol:VC_2461 "ribonuclease III" species:686 "Vibrio
cholerae O1 biovar El Tor" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:AE003852
GenomeReviews:AE003852_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0006396 GO:GO:0003725 GO:GO:0008033 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
ProtClustDB:PRK00102 TIGRFAMs:TIGR02191 OMA:LTHKSCK PIR:B82073
RefSeq:NP_232090.1 ProteinModelPortal:Q9KPB2 DNASU:2613003
GeneID:2613003 KEGG:vch:VC2461 PATRIC:20083943 Uniprot:Q9KPB2
Length = 225
Score = 125 (49.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 37/121 (30%), Positives = 65/121 (53%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
L S L Y+F++ LL ALTH S + +RLEFLGD++L ++I LY ++P ++
Sbjct: 8 LTSKLGYTFKETELLNLALTHRSAN----GKHNERLEFLGDSILSFVIADELYRRFPKVN 63
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL----YKRINITVDSFEKLSLGST 1269
G ++ MR+ V + A + L ++ EL ++R +I D+ E + +G+
Sbjct: 64 EGDMSRMRATLVRGNTLAELGREFDLGDYLKLGPGELKSGGFRRDSILADAVEAI-IGAI 122
Query: 1270 F 1270
+
Sbjct: 123 Y 123
Score = 70 (29.7 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 28/113 (24%), Positives = 47/113 (41%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFS 1339
L D +E++ GAI++DS R +V + LE I P + P L E+ Q
Sbjct: 111 LADAVEAIIGAIYLDSDLETARSIVLEWYHGRLEE-IKPGASQKDPKTRLQEFLQGRRKP 169
Query: 1340 MKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
+ + I G+A TV + G ++ A++ A + L+ L
Sbjct: 170 LPVYTVTNIKGEAHNQEFTVACEVAGMDTPVIGKGTSRRKAEQAAAETALEQL 222
>TIGR_CMR|CPS_4122 [details] [associations]
symbol:CPS_4122 "ribonuclease III" species:167879
"Colwellia psychrerythraea 34H" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000083 GenomeReviews:CP000083_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:YP_270777.1 ProteinModelPortal:Q47WP5 STRING:Q47WP5
GeneID:3521712 KEGG:cps:CPS_4122 PATRIC:21471107
BioCyc:CPSY167879:GI48-4135-MONOMER Uniprot:Q47WP5
Length = 266
Score = 143 (55.4 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 43/125 (34%), Positives = 65/125 (52%)
Query: 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
N+ L L Y F +P LLV+ALTH S +RLEFLGD++L ++I LY+K+
Sbjct: 7 NLARLTKKLGYEFNEPLLLVQALTHRSAKGAH----NERLEFLGDSILGFVIAEALYDKF 62
Query: 1210 PGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHEL----YKRINITVDSFEKLS 1265
P G LT MRS+ V A + L + ++ EL + R +I D+ E +
Sbjct: 63 PKHDEGDLTRMRSSLVKGVTLAEVARDFNLGECLILGPGELKSGGHHRESILEDAIEAI- 121
Query: 1266 LGSTF 1270
+G+ +
Sbjct: 122 IGAVY 126
Score = 54 (24.1 bits), Expect = 1.0e-07, Sum P(2) = 1.0e-07
Identities = 16/55 (29%), Positives = 27/55 (49%)
Query: 1282 LGDIIESLAGAIFVDSG--CNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQ 1334
L D IE++ GA+++DS C + ++ L +I P + P L E+ Q
Sbjct: 114 LEDAIEAIIGAVYLDSNIECCKALILSWFERRLM-VIKPGNEQKDPKTRLQEFLQ 167
>UNIPROTKB|I3LAY7 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005524 "ATP binding" evidence=IEA] [GO:0008026
"ATP-dependent helicase activity" evidence=IEA] [GO:0006259 "DNA
metabolic process" evidence=IEA] [GO:0004518 "nuclease activity"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:CU570961
Ensembl:ENSSSCT00000030082 Uniprot:I3LAY7
Length = 2028
Score = 130 (50.8 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 37/125 (29%), Positives = 68/125 (54%)
Query: 407 LSELLPRHCTW-KTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEEGLD 463
++E+L RH + G+ SG + ++K+Q E+V++FR G N +V+T + EEGLD
Sbjct: 475 IAEMLLRHQPIIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEEGLD 534
Query: 464 VQSCNLVIMFDPSRTVCSFIQSRGRA--RMQNSDYLLMVKSGDSTTQSRLEN-----YLA 516
+ +L+I FD ++ +Q GR + Q +++ + + T ++ ++ Y A
Sbjct: 535 IGEVDLIICFDAQKSPIRLVQRMGRTGRKRQGRIVVILAEGREERTYNQSQSNKRSIYKA 594
Query: 517 -SGNK 520
SGNK
Sbjct: 595 ISGNK 599
Score = 113 (44.8 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 43/153 (28%), Positives = 63/153 (41%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 101 RDYQLNIARTALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPSGKVVFMAPTKPLVTQ 158
Query: 83 XXXEAIKMH--TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140
++ + + G V F T KE VL +TPQ++++ L
Sbjct: 159 QIEACYRVMGIPQSHMAEMTGSTQV-F----TRKEIWDSKRVLFLTPQVMVNDLSRGACP 213
Query: 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173
IK L++DE H A G + Y + + LL
Sbjct: 214 AAEIKCLVIDEAHRALGNYAYCQAVQQVITNLL 246
Score = 42 (19.8 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 20/108 (18%), Positives = 42/108 (38%)
Query: 557 LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGIC--TLYLPNNCP-IQTVIAQGNIKT 613
+ + + +++ C +D K K +GI T+ N C +Q ++ NI
Sbjct: 1906 IGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHVPTVVNSNKCEALQFYLSIPNISY 1964
Query: 614 LKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPI 661
+ L C + + +T++ +I + ++ E Y H I
Sbjct: 1965 I---TALNMCHQFSSVKKMTNSSPQEISMYAQVTHQKAEEIYRYIHYI 2009
Score = 40 (19.1 bits), Expect = 2.0e-07, Sum P(4) = 2.0e-07
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 1075 LNDDSLFNGRKIYVTGRKKVKSK 1097
+++DS +G K Y T R+ VK K
Sbjct: 1608 ISEDSFASGSKKYKT-RRAVKLK 1629
Score = 37 (18.1 bits), Expect = 1.3e-07, Sum P(4) = 1.3e-07
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLE 269
Y ++ L L++ELA I+ + + LE
Sbjct: 263 YSHERRVEKLVVPLSEELAAIQKAYIQILE 292
>DICTYBASE|DDB_G0268410 [details] [associations]
symbol:drnB "putative RNase III" species:44689
"Dictyostelium discoideum" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 dictyBase:DDB_G0268410 GenomeReviews:CM000150_GR
Gene3D:3.30.160.20 EMBL:AAFI02000003 GO:GO:0005622 GO:GO:0006396
GO:GO:0003725 GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
RefSeq:XP_647462.2 ProteinModelPortal:Q55FS1
EnsemblProtists:DDB0231869 GeneID:8616269 KEGG:ddi:DDB_G0268410
OMA:NEYENEY ProtClustDB:CLSZ2431100 Uniprot:Q55FS1
Length = 1385
Score = 151 (58.2 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 51/146 (34%), Positives = 71/146 (48%)
Query: 1097 KTVADVVEALIGA-FLSTGGENVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVN--VRH 1153
K ADV+EALIGA ++ G + + I + D Y +F+ E L + +R
Sbjct: 1161 KPQADVIEALIGAVYIDRGFFEAYKLTVCWIFDEPDAEYPIYNTKFE---ETLAHQEIRA 1217
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLS 1213
+ SLL EAL Y + YQRLE++GDAVLD+ ++ +LY +P
Sbjct: 1218 FLDGIGVHISHSSLLEEALCF-PYSFHSASKSYQRLEYVGDAVLDFFVSDFLYATFPLAQ 1276
Query: 1214 PGYLTDMRSASVNNDCYALSSVKHGL 1239
G LTD RS V N LSS+ L
Sbjct: 1277 EGQLTDYRSRLVRNS--NLSSISRKL 1300
Score = 69 (29.3 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 24/66 (36%), Positives = 30/66 (45%)
Query: 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALC----KLGCEQKLPGF 1052
+ LE LGDS LK ++ LF Y EG LS + N L +LG E+ L F
Sbjct: 1095 QRLEFLGDSVLKLVSTIYLFFKYPKMSEGFLSQTRSDFTKNDHLLDVSKRLGLEEILR-F 1153
Query: 1053 IRTESF 1058
E F
Sbjct: 1154 TTEEEF 1159
Score = 54 (24.1 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 18/49 (36%), Positives = 24/49 (48%)
Query: 1250 LYKRINITVDSFEKLSLGSTFGWESVTSFP-KALGDIIESLAGAIFVDS 1297
L + N++ S KL L T + P K LGD +ES G FVD+
Sbjct: 1287 LVRNSNLSSIS-RKLCLPPTVSKGIRDTLPIKKLGDYLESFIGCCFVDT 1334
Score = 45 (20.9 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 17/54 (31%), Positives = 27/54 (50%)
Query: 668 VNQSPQDTKITYHCYLIELK--QHFNYDISARNIVLAMRTELESEIKKVNFDLE 719
+N+ Q K+ Y E K +H N D ++IV+ E+ES+ KK + E
Sbjct: 13 LNEWLQKRKLPLSIYHTEYKGSEH-NKDF--KSIVIVNGKEIESDWKKTKKESE 63
Score = 43 (20.2 bits), Expect = 1.5e-05, Sum P(4) = 1.5e-05
Identities = 15/50 (30%), Positives = 22/50 (44%)
Query: 1065 IPGDNSGSYELNDDSLFNGRKIYVTGR---KKVKSKTVADVVEALIGAFL 1111
IP N S N+ NG +V KK++ V+DVV I ++
Sbjct: 534 IPSTNQFSTYFNNSQ--NGHNKFVQTNFDFKKIELSVVSDVVPDFISFYV 581
Score = 41 (19.5 bits), Expect = 3.8e-07, Sum P(5) = 3.8e-07
Identities = 10/27 (37%), Positives = 17/27 (62%)
Query: 504 DSTTQSRLENYLASGNKMRKEVLSHAS 530
+S+ Q+++ L S K++KEV S S
Sbjct: 274 ESSYQNQISIMLYSQQKLQKEVASFKS 300
Score = 37 (18.1 bits), Expect = 1.6e-07, Sum P(5) = 1.6e-07
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 858 NANSLFTRNNGSVTTYKKHYEERY 881
N N + N +V Y+ YE Y
Sbjct: 836 NENEIEIENE-NVNEYENEYENEY 858
>ZFIN|ZDB-GENE-090929-1 [details] [associations]
symbol:fancm "Fanconi anemia, complementation group
M" species:7955 "Danio rerio" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0004518 "nuclease activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006259 "DNA metabolic process" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR006166 InterPro:IPR011545 InterPro:IPR020819
Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194 SMART:SM00490
SMART:SM00891 ZFIN:ZDB-GENE-090929-1 GO:GO:0005524 GO:GO:0003677
GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004518
GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781 CTD:57697
HOVERGEN:HBG081520 KO:K10896 Gene3D:3.40.50.10130 EMBL:EF088195
IPI:IPI00882629 RefSeq:NP_001107132.1 UniGene:Dr.154581
ProteinModelPortal:A8QLH8 GeneID:100006685 KEGG:dre:100006685
NextBio:20787226 Uniprot:A8QLH8
Length = 1761
Score = 127 (49.8 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 37/138 (26%), Positives = 70/138 (50%)
Query: 387 DIRCIIFVERVITAIVLQSLLSELLP--RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF 444
D R +IF + + +L+ P R T+ + AG G++ ++K+Q E+V F
Sbjct: 434 DTRVMIFSSYRESVQEIAEMLNRHQPLVRVMTFMGQASAGR--GVRGFTQKEQLEVVWRF 491
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMV--KS 502
R G N +V+T + EEGLD+ +L++ FD ++ +Q GR Q ++++ +
Sbjct: 492 REGGFNTLVSTCVGEEGLDIGEVDLIVCFDAQKSPIRLVQRMGRTGRQRQGRIVVILAEG 551
Query: 503 GDSTTQSRLENYLASGNK 520
+ T ++ ++ S NK
Sbjct: 552 REERTYNQSQSNRRSINK 569
Score = 98 (39.6 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 23/41 (56%), Positives = 27/41 (65%)
Query: 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
LP R YQL E AL QNT+V L TG GKT IA +L+ +Y
Sbjct: 75 LPL-REYQLRVCEAALLQNTLVCLPTGLGKTFIASVLMYNY 114
Score = 53 (23.7 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 8/23 (34%), Positives = 14/23 (60%)
Query: 145 KVLILDECHHARGKHQYACIMTE 167
+ +++DE H A G H Y ++ E
Sbjct: 180 RCVVIDEAHKATGNHAYCQVIRE 202
Score = 41 (19.5 bits), Expect = 3.5e-07, Sum P(5) = 3.5e-07
Identities = 10/22 (45%), Positives = 14/22 (63%)
Query: 1072 SYEL-NDDSLFNGRKIYVTGRK 1092
S EL +DS +GR+ Y T R+
Sbjct: 1422 SVELIPEDSFIDGRRQYATRRR 1443
Score = 40 (19.1 bits), Expect = 1.8e-07, Sum P(4) = 1.8e-07
Identities = 11/46 (23%), Positives = 21/46 (45%)
Query: 765 NEILDGFELRDNLEIDYLLLPSTGQLIDWKTVATVLFPRDNGSKHN 810
+E+L +R +L++ L ST ++ +T + S HN
Sbjct: 1551 SELLSLLRIRHHLQVHVCSLGSTDFIVSNRTAVEWQSESEVSSAHN 1596
Score = 40 (19.1 bits), Expect = 3.5e-07, Sum P(5) = 3.5e-07
Identities = 8/27 (29%), Positives = 14/27 (51%)
Query: 1217 LTDMRSASVNNDCYALSSVKHGLHKHI 1243
L D R S ++ +L ++H L H+
Sbjct: 1541 LVDARCISGGSELLSLLRIRHHLQVHV 1567
>UNIPROTKB|J9NY43 [details] [associations]
symbol:FANCM "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005524 "ATP binding" evidence=IEA]
[GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0006259 "DNA metabolic process" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0003677 "DNA binding"
evidence=IEA] InterPro:IPR001650 InterPro:IPR006166
InterPro:IPR011545 InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271
PROSITE:PS51194 SMART:SM00490 SMART:SM00891 GO:GO:0005524
GO:GO:0003677 GO:GO:0006259 GO:GO:0090305 InterPro:IPR011335
SUPFAM:SSF52980 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0004518 GO:GO:0008026 InterPro:IPR010994 SUPFAM:SSF47781
Gene3D:3.40.50.10130 GeneTree:ENSGT00640000091530 EMBL:AAEX03005706
Ensembl:ENSCAFT00000048988 Uniprot:J9NY43
Length = 2022
Score = 124 (48.7 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 28/100 (28%), Positives = 53/100 (53%)
Query: 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEFRRGLVNVIVATSILEE 460
+Q + LL + G+ SG + ++K+Q E+V++FR G N +V+T + EE
Sbjct: 463 VQEIAEMLLQHQPVIRVMTFVGHASGKSMKGFTQKEQLEVVKQFRSGGYNTLVSTCVGEE 522
Query: 461 GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMV 500
GLD+ +L+I FD ++ +Q GR + ++++
Sbjct: 523 GLDIGEVDLIICFDAQKSPIRLVQRMGRTGRKRKGRIVVI 562
Score = 80 (33.2 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 18/50 (36%), Positives = 26/50 (52%)
Query: 112 TWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQY 161
T KE VL +TPQ++++ L IK L++DE H A G + Y
Sbjct: 176 TRKEIWRSKRVLFLTPQVMVNDLSRGACPAAEIKCLVIDEAHKALGNYAY 225
Score = 77 (32.2 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSY 59
R+YQL+ +L NT+V L TG GKT IA +++ ++
Sbjct: 92 RDYQLQITRTSLFCNTLVCLPTGLGKTFIAAVVMYNF 128
Score = 44 (20.5 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 21/131 (16%), Positives = 49/131 (37%)
Query: 545 FYHVESTGTIAT--LSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPI 602
F +S + T + + + +++ C +D K K +GI + N
Sbjct: 1886 FRRTKSYDNLLTTLIGAGIRILFSSCQEETAD-LLKELSLVEQRKNVGIHIPTVVNRSKC 1944
Query: 603 QTVIAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVEKHDAQKRGNEPYNAEHPIY 662
+ + +I + L C + + +T++ +I + ++ E Y H ++
Sbjct: 1945 EALQFYLSIPHISYITALNMCHRFSSVKRMTNSSPQEISMYAQVTHQKAEEIYRYIHYVF 2004
Query: 663 ---FPPELVNQ 670
P+ +NQ
Sbjct: 2005 NMQMLPDGLNQ 2015
Score = 40 (19.1 bits), Expect = 7.1e-07, Sum P(5) = 7.1e-07
Identities = 15/66 (22%), Positives = 27/66 (40%)
Query: 1329 LTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKS 1388
L+E N FS + R V++Q+ TF+D+ +K +E +
Sbjct: 1315 LSESNTLNSFSKNRKEVPRTPDSNKGKVDLQSFKETLNSTFVDSGLHV-EKAKSREEINF 1373
Query: 1389 LRASFP 1394
L++ P
Sbjct: 1374 LQSYHP 1379
Score = 38 (18.4 bits), Expect = 3.0e-07, Sum P(5) = 3.0e-07
Identities = 10/45 (22%), Positives = 21/45 (46%)
Query: 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKK 284
Y ++ L L +ELA I+ + + LE + Q ++ ++
Sbjct: 254 YSHERRVEKLVVPLGEELAAIQKAYIQVLEAFASSLIQRNILMRR 298
>TIGR_CMR|ECH_1054 [details] [associations]
symbol:ECH_1054 "ribonuclease III" species:205920
"Ehrlichia chaffeensis str. Arkansas" [GO:0003725 "double-stranded
RNA binding" evidence=ISS] [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 EMBL:CP000236
GenomeReviews:CP000236_GR GO:GO:0006397 Gene3D:3.30.160.20
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HSSP:Q9X0I6 HOGENOM:HOG000246809 ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 OMA:LTHKSCK RefSeq:YP_507839.1
ProteinModelPortal:Q2GFE4 STRING:Q2GFE4 GeneID:3927257
KEGG:ech:ECH_1054 PATRIC:20577460
BioCyc:ECHA205920:GJNR-1057-MONOMER Uniprot:Q2GFE4
Length = 226
Score = 140 (54.3 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 30/76 (39%), Positives = 49/76 (64%)
Query: 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRC-YQRLEFLGDAVLDYLITVYLYNKY 1209
+ + ++ Y+F++P LL EALTH S + + + Y+RLEFLGDAVL+ +I+ L+N +
Sbjct: 2 IESISKIIKYNFKNPQLLNEALTHPSLVSKDTLKFNYERLEFLGDAVLNIVISEMLFNIF 61
Query: 1210 PGLSPGYLTDMRSASV 1225
P + G L ++A V
Sbjct: 62 PKDTEGNLAKKKTALV 77
Score = 45 (20.9 bits), Expect = 4.7e-07, Sum P(2) = 4.7e-07
Identities = 13/44 (29%), Positives = 24/44 (54%)
Query: 1255 NITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSG 1298
+I + F +S G + +F + L + +E+L GAI++D G
Sbjct: 88 SINLGQFIMMSDGER-ACGGINNF-RNLENALEALIGAIYLDGG 129
>TIGR_CMR|CBU_1503 [details] [associations]
symbol:CBU_1503 "ribonuclease III" species:227377
"Coxiella burnetii RSA 493" [GO:0004525 "ribonuclease III activity"
evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE016828 GenomeReviews:AE016828_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 EMBL:L27436
KO:K03685 HOGENOM:HOG000246809 OMA:RACELPR ProtClustDB:PRK00102
TIGRFAMs:TIGR02191 PIR:S60767 RefSeq:NP_820486.1
ProteinModelPortal:P51837 GeneID:1209413 KEGG:cbu:CBU_1503
PATRIC:17931771 BioCyc:CBUR227377:GJ7S-1488-MONOMER Uniprot:P51837
Length = 233
Score = 128 (50.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 36/96 (37%), Positives = 52/96 (54%)
Query: 1151 VRHLESL---LNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYN 1207
+ HL L L + F + LL ALTH S +RLEFLGD+VL ++I LY
Sbjct: 1 MNHLNKLMERLGHQFNNLELLKIALTHCSSGADN----NERLEFLGDSVLGFIIASELYQ 56
Query: 1208 KYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI 1243
+ P G L+ MR++ VN D A S K G+++++
Sbjct: 57 RRPQAREGDLSRMRASMVNGDELAQMSTKLGINEYL 92
Score = 57 (25.1 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/114 (20%), Positives = 53/114 (46%)
Query: 1282 LGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMK 1341
L D +E++ GAI++D+G E + + + + + P ++ Q+ + +
Sbjct: 110 LADALEAIVGAIYIDAGL--ETCRRCVLNWYGERVD-DLSKLSPKKDAKSLLQEWLQARR 166
Query: 1342 KPVAS---RISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
P+ + +I+G+A TV G + ++ ++ A+++A K L+ L
Sbjct: 167 LPLPTYEVKITGEAHAQTFTVNCYVKGLPHKTEGVNTTRRRAEQIAAKRFLELL 220
>TIGR_CMR|CPS_4097 [details] [associations]
symbol:CPS_4097 "ATP-dependent RNA helicase SrmB"
species:167879 "Colwellia psychrerythraea 34H" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0008186
"RNA-dependent ATPase activity" evidence=ISS] [GO:0042254 "ribosome
biogenesis" evidence=ISS] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
EMBL:CP000083 GenomeReviews:CP000083_GR InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HOGENOM:HOG000268807 KO:K05590
ProtClustDB:PRK11192 RefSeq:YP_270752.2 ProteinModelPortal:Q47WS0
STRING:Q47WS0 PRIDE:Q47WS0 GeneID:3520098 KEGG:cps:CPS_4097
PATRIC:21471063 OMA:YLDKGHF BioCyc:CPSY167879:GI48-4110-MONOMER
Uniprot:Q47WS0
Length = 430
Score = 129 (50.5 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 42/143 (29%), Positives = 68/143 (47%)
Query: 375 LIESLLEYRGVEDIRCIIFVERVITAIVLQS-LLSELLPRHCTWKTKYIAGNNSGIQCQS 433
L+ + L+ GVE R ++F + T L L +E LP C W + G
Sbjct: 247 LLVNTLKQEGVE--RTVVFANKRETVQYLSGKLYAEELP--CVW----LEGK------MP 292
Query: 434 RKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARM-- 491
+ K+N+ +E F++G V V+VAT + GLD+ + VI FD R V +I GR
Sbjct: 293 QDKRNKAIERFKKGEVKVLVATDVAARGLDIDDISHVINFDMPRKVDIYIHRIGRTGRAG 352
Query: 492 QNSDYLLMVKSGDSTTQSRLENY 514
+ + +V++ D ++E Y
Sbjct: 353 KKGTAISLVEAHDMGVIGKIERY 375
Score = 63 (27.2 bits), Expect = 4.1e-06, Sum P(2) = 4.1e-06
Identities = 29/113 (25%), Positives = 49/113 (43%)
Query: 44 TGSGKTLIAIMLLRSYA--YLLRKPS-PXXXXXXXXXXXXXXXXXEAIKMH--TDLKVGK 98
TG+GKT ++ + + Y KP P ++ ++ T +K G
Sbjct: 59 TGTGKTAAFLLPIAQHLLDYPRTKPGFPRVLILTPTRELAIQIGEDSEQLTELTKIKTGV 118
Query: 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
G GV++ G+ S ++LV TP LL+ + F I++L+LDE
Sbjct: 119 ITG--GVNY--GSHADILTSTTDILVATPGRLLEYIENEQFDAREIEILVLDE 167
>UNIPROTKB|D4ADT5 [details] [associations]
symbol:Ddx58 "Protein Ddx58" species:10116 "Rattus
norvegicus" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] InterPro:IPR007087 InterPro:IPR011545 Pfam:PF00270
PROSITE:PS00028 RGD:1309460 GO:GO:0005524 GO:GO:0008270
GO:GO:0003676 Gene3D:1.10.533.10 InterPro:IPR011029
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
GeneTree:ENSGT00510000046789 IPI:IPI00778544
Ensembl:ENSRNOT00000060765 ArrayExpress:D4ADT5 Uniprot:D4ADT5
Length = 596
Score = 145 (56.1 bits), Expect = 4.5e-06, P = 4.5e-06
Identities = 45/171 (26%), Positives = 76/171 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
RNYQLE A K +NT++ TG GKT +++++ + L P
Sbjct: 245 RNYQLELALPAKKGKNTVICAPTGCGKTFVSLLICEHH--LKNFPHGQKGKVVFFANQIP 302
Query: 82 XXXXEAIKMHTDLKVGKY--WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF 139
+A + Y G G D + + + ++++++TPQIL++ L
Sbjct: 303 VYEQQATVFSRYFERFGYNVAGISGATA-DNVSVQHIIENNDIVILTPQILVNSLNNGAI 361
Query: 140 -KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTAS 189
L++ ++I DECH+ H Y IM + L LP++ G+TAS
Sbjct: 362 PSLSVFTLMIFDECHNTSKHHPYNQIMFRYLDHKLGGSPDPLPQVIGLTAS 412
>UNIPROTKB|Q61XX9 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6238 "Caenorhabditis
briggsae" [GO:0004525 "ribonuclease III activity" evidence=ISS]
[GO:0019953 "sexual reproduction" evidence=ISS] [GO:0031053
"primary miRNA processing" evidence=ISS] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0030154
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0003725
GO:GO:0016075 GO:GO:0019953 GO:GO:0006364 EMBL:HE600906
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 KO:K03685 RefSeq:XP_002639240.1
HSSP:O67082 ProteinModelPortal:Q61XX9 EnsemblMetazoa:CBG03798
GeneID:8581234 KEGG:cbr:CBG03798 CTD:8581234 WormBase:CBG03798
HOGENOM:HOG000154167 OMA:FNIMGGE Uniprot:Q61XX9
Length = 1061
Score = 129 (50.5 bits), Expect = 7.5e-06, Sum P(5) = 7.5e-06
Identities = 29/102 (28%), Positives = 56/102 (54%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLY 1206
L + LE ++ F + LL +A T + ++ + + QRLE+LGD+VL +I+ YLY
Sbjct: 808 LTDFHRLEQIIGIEFNNIRLLAKAFTRRNVPFNDLTKGHNQRLEWLGDSVLQLIISDYLY 867
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASH 1248
+P G+++ +R++ V+N ++ G + ++ A H
Sbjct: 868 RNFPLHHEGHMSLLRTSLVSNQTQSVVCDDLGFQEFVIKAPH 909
Score = 77 (32.2 bits), Expect = 7.5e-06, Sum P(5) = 7.5e-06
Identities = 18/49 (36%), Positives = 27/49 (55%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
H E LE LGD+ ++ AS LF ++ EG L+ + ++ N L KL
Sbjct: 667 HNERLEYLGDAVVELIASHHLFFILNHHFEGGLATYRTALVQNRNLAKL 715
Score = 51 (23.0 bits), Expect = 7.5e-06, Sum P(5) = 7.5e-06
Identities = 15/57 (26%), Positives = 28/57 (49%)
Query: 1280 KALGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRE-LTEYC 1333
K D++E+ GA++VD G R + P L+ I E +++ + L ++C
Sbjct: 917 KDKADLVEAFIGALYVDKGLEYCRSFIRTVFCPRLKHFINSE--KWNDAKSHLQQWC 971
Score = 38 (18.4 bits), Expect = 7.5e-06, Sum P(5) = 7.5e-06
Identities = 7/21 (33%), Positives = 10/21 (47%)
Query: 418 KTKYIAGNNSGIQCQSRKKQN 438
K Y AG N ++C + N
Sbjct: 266 KHGYYAGENQVLKCSKNDRAN 286
Score = 38 (18.4 bits), Expect = 7.5e-06, Sum P(5) = 7.5e-06
Identities = 13/55 (23%), Positives = 26/55 (47%)
Query: 865 RNNGSVTTYKKHYEERYG----IQLCFDREPLLN--GRRIFHVQNYLSKCRQQKQ 913
R N S++ ++K E ++ ++L + G HV+N +S C +K+
Sbjct: 581 RYNFSLSVFEKVIEYKFNDRRIVELALIHSSFRSYYGTTPDHVKNMISNCGYRKK 635
>UNIPROTKB|F1NE03 [details] [associations]
symbol:Gga.50035 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0004518
"nuclease activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0000712 "resolution of meiotic recombination
intermediates" evidence=IEA] [GO:0003682 "chromatin binding"
evidence=IEA] [GO:0031297 "replication fork processing"
evidence=IEA] [GO:0043240 "Fanconi anaemia nuclear complex"
evidence=IEA] [GO:0071821 "FANCM-MHF complex" evidence=IEA]
InterPro:IPR001650 InterPro:IPR006166 InterPro:IPR011545
InterPro:IPR020819 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 SMART:SM00891 GO:GO:0005524 GO:GO:0003677
GO:GO:0003682 GO:GO:0090305 InterPro:IPR011335 SUPFAM:SSF52980
InterPro:IPR014001 PROSITE:PS51192 GO:GO:0004518 GO:GO:0031297
GO:GO:0008026 GO:GO:0000712 GO:GO:0071821 GO:GO:0043240
InterPro:IPR010994 SUPFAM:SSF47781 OMA:QMGMRSL Gene3D:3.40.50.10130
GeneTree:ENSGT00640000091530 EMBL:AADN02004087 EMBL:AADN02004088
IPI:IPI00590518 Ensembl:ENSGALT00000020359 ArrayExpress:F1NE03
Uniprot:F1NE03
Length = 1836
Score = 127 (49.8 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 40/145 (27%), Positives = 69/145 (47%)
Query: 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQ--SRKKQNEIVEEF 444
D R +IF + + +LS P + G+++G + ++K+Q E+V+ F
Sbjct: 310 DTRVMIFSSFRDSVQEIAEMLSRFSP---VVRVMTFVGHSTGKSTKGFTQKEQLEVVKRF 366
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNSDYLLMVKSG 503
R G N +V+T + EEGLD+ +L+I FD ++ +Q GR R + ++++ G
Sbjct: 367 REGGYNTLVSTCVGEEGLDIGEVDLIICFDAQKSPIRLVQRMGRTGRQRQGRVVVILAEG 426
Query: 504 -------DSTTQSRLENYLASGNKM 521
S + R SGNKM
Sbjct: 427 REERTYNQSQSNRRSIQKAISGNKM 451
Score = 85 (35.0 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 21/77 (27%), Positives = 36/77 (46%)
Query: 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173
+E + V +TPQI+++ L +K L++DE H A G H Y ++ E
Sbjct: 9 RELWASRRVFFLTPQIMVNDLSRGTCPAVEVKCLVVDEAHKALGNHAYCQVVKELSRYTT 68
Query: 174 ETGDSNLPRIFGMTASP 190
+ R+ +TA+P
Sbjct: 69 QF------RVLALTATP 79
Score = 47 (21.6 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 13/28 (46%), Positives = 16/28 (57%)
Query: 695 SARNIVLAMRTEL----ESEIKKVNFDL 718
SAR + L T+ E EI+KV FDL
Sbjct: 700 SARRLTLVASTDQGSPKEEEIEKVTFDL 727
Score = 43 (20.2 bits), Expect = 7.6e-06, Sum P(4) = 7.6e-06
Identities = 10/28 (35%), Positives = 13/28 (46%)
Query: 892 LLNGRRIFHVQNYLSKCRQQKQKEPSKI 919
L R+ H N C QK+PS+I
Sbjct: 1448 LTRRRKKLHGANMEQNCSAPVQKKPSRI 1475
>UNIPROTKB|P66666 [details] [associations]
symbol:rnc "Ribonuclease 3" species:1773 "Mycobacterium
tuberculosis" [GO:0040007 "growth" evidence=IMP] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005737 GO:GO:0040007 EMBL:AE000516 GenomeReviews:AE000516_GR
GenomeReviews:AL123456_GR GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 GO:GO:0003725 GO:GO:0008033 GO:GO:0090305
EMBL:BX842581 GO:GO:0016075 GO:GO:0006364 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 KO:K03685 ProtClustDB:PRK00102 TIGRFAMs:TIGR02191
HOGENOM:HOG000246808 OMA:LTHKSCK PIR:E70748 RefSeq:NP_217441.1
RefSeq:NP_337508.1 RefSeq:YP_006516379.1 PDB:2A11 PDBsum:2A11
ProteinModelPortal:P66666 SMR:P66666 PRIDE:P66666
EnsemblBacteria:EBMYCT00000002463 EnsemblBacteria:EBMYCT00000072869
GeneID:13317719 GeneID:887873 GeneID:925280 KEGG:mtc:MT2995
KEGG:mtu:Rv2925c KEGG:mtv:RVBD_2925c PATRIC:18128352
TubercuList:Rv2925c EvolutionaryTrace:P66666 Uniprot:P66666
Length = 240
Score = 117 (46.2 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 41/113 (36%), Positives = 57/113 (50%)
Query: 1167 LLVEALTHGSYMLPE--IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSAS 1224
LL ALTH SY +P +RLEFLGDAVL IT L++++P S G L +R++
Sbjct: 20 LLSLALTHRSYAYENGGLPT-NERLEFLGDAVLGLTITDALFHRHPDRSEGDLAKLRASV 78
Query: 1225 VNNDCYALSSVK---HGLHKHILHASHELYK----RINITVDSFEKLSLGSTF 1270
VN A + + GL H+L E + +I D E L LG+ +
Sbjct: 79 VNTQALADVARRLCAEGLGVHVLLGRGEANTGGADKSSILADGMESL-LGAIY 130
Score = 61 (26.5 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 15/34 (44%), Positives = 21/34 (61%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLE 1313
L D +ESL GAI++ G REV+ + PLL+
Sbjct: 118 LADGMESLLGAIYLQHGMEKAREVILRLFGPLLD 151
>UNIPROTKB|F1PJL5 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0006396 "RNA processing" evidence=IEA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] HAMAP:MF_00104
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0006396 GO:GO:0003725
GO:GO:0016075 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 EMBL:AAEX03003196
Ensembl:ENSCAFT00000030086 OMA:TSICAFD Uniprot:F1PJL5
Length = 627
Score = 121 (47.7 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 219 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 278
Query: 1247 -SHELYKRINIT---VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNRE 1302
+L + ++ + FE L +G+ + S+ + G ++ F D RE
Sbjct: 279 HGPDLCRESDLRHAMANCFEAL-IGAVYLEGSLEEAKQLFGRLL-------FNDPDL-RE 329
Query: 1303 VVFQ-SIRPLL--EPMITPETMRFHPV-RELTEY 1332
V + PL EP + + PV ++LTE+
Sbjct: 330 VWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 363
Score = 108 (43.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 43/162 (26%), Positives = 75/162 (46%)
Query: 1099 VADVVEALIGAFLSTGG-ENV----GLIFLDRIGIKVDFVNVP-YQRQFQV-HAER---- 1147
+A+ EALIGA G E G + + ++ ++N P + Q Q + +R
Sbjct: 293 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIE 352
Query: 1148 ----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLIT 1202
L + E + F LL A T + + + QR+EFLGD+++ + T
Sbjct: 353 TSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 412
Query: 1203 VYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
YL+ +P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 413 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 454
Score = 74 (31.1 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 217 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 275
Score = 66 (28.3 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 131 HLDKLIGYTFQDRCLLQLAMTHPSHHL 157
Score = 52 (23.4 bits), Expect = 3.1e-05, Sum P(3) = 3.1e-05
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 468 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 526
Query: 1338 FSMKKP 1343
K+P
Sbjct: 527 TEGKEP 532
>UNIPROTKB|Q9KU63 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:243277 "Vibrio cholerae O1 biovar El Tor str. N16961"
[GO:0004004 "ATP-dependent RNA helicase activity" evidence=ISS]
[GO:0016070 "RNA metabolic process" evidence=ISS]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 EMBL:AE003852 GenomeReviews:AE003852_GR
GO:GO:0003676 GO:GO:0016070 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 InterPro:IPR014014 PROSITE:PS51195
HSSP:P10081 OMA:PLAMDQR KO:K05590 ProtClustDB:PRK11192 PIR:F82295
RefSeq:NP_230309.1 ProteinModelPortal:Q9KU63 DNASU:2615450
GeneID:2615450 KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 107 (42.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNS 494
++N + FR G VN+++AT + G+DV + VI FD R+ ++ GR R
Sbjct: 284 RRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKK 343
Query: 495 DYLL-MVKSGDSTTQSRLENYLASGNKMR 522
+ +V++ D +R+E Y+ K R
Sbjct: 344 GIAISLVEAHDQPMMARVERYIKEEVKER 372
Score = 77 (32.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 41/156 (26%), Positives = 66/156 (42%)
Query: 6 MESDTTEEVSADTLPFAR--NYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYL 62
+E D + + + F+R Q EA+ AL ++ + TG+GKT A ++ + YL
Sbjct: 8 LELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKT--AAFVIPALQYL 65
Query: 63 L----RKPSPXXXXXXXXXXXXXXXXXE---AIKMHTDLKVGKYWGDMGVDFWDGATWKE 115
L RK P E A+ +T L + G GV + + A
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG--GVQYQEHADILA 123
Query: 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
+ +++V TP LL+ + F I+ LILDE
Sbjct: 124 --TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDE 157
>TIGR_CMR|VC_0660 [details] [associations]
symbol:VC_0660 "ATP-dependent RNA helicase SrmB"
species:686 "Vibrio cholerae O1 biovar El Tor" [GO:0004004
"ATP-dependent RNA helicase activity" evidence=ISS] [GO:0016070
"RNA metabolic process" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
EMBL:AE003852 GenomeReviews:AE003852_GR GO:GO:0003676 GO:GO:0016070
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0004004
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
KO:K05590 ProtClustDB:PRK11192 PIR:F82295 RefSeq:NP_230309.1
ProteinModelPortal:Q9KU63 DNASU:2615450 GeneID:2615450
KEGG:vch:VC0660 PATRIC:20080435 Uniprot:Q9KU63
Length = 423
Score = 107 (42.7 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 26/89 (29%), Positives = 45/89 (50%)
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNS 494
++N + FR G VN+++AT + G+DV + VI FD R+ ++ GR R
Sbjct: 284 RRNNAISRFREGDVNILLATDVAARGIDVPDISHVINFDLPRSADVYLHRIGRTGRAGKK 343
Query: 495 DYLL-MVKSGDSTTQSRLENYLASGNKMR 522
+ +V++ D +R+E Y+ K R
Sbjct: 344 GIAISLVEAHDQPMMARVERYIKEEVKER 372
Score = 77 (32.2 bits), Expect = 3.3e-05, Sum P(2) = 3.3e-05
Identities = 41/156 (26%), Positives = 66/156 (42%)
Query: 6 MESDTTEEVSADTLPFAR--NYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYL 62
+E D + + + F+R Q EA+ AL ++ + TG+GKT A ++ + YL
Sbjct: 8 LELDPILLEAIEEMGFSRPTQVQAEAIPQALDGRDVLASAPTGTGKT--AAFVIPALQYL 65
Query: 63 L----RKPSPXXXXXXXXXXXXXXXXXE---AIKMHTDLKVGKYWGDMGVDFWDGATWKE 115
L RK P E A+ +T L + G GV + + A
Sbjct: 66 LDFPRRKAGPARILILTPTRELAMQVAEQAQALAKNTRLNIFTITG--GVQYQEHADILA 123
Query: 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
+ +++V TP LL+ + F I+ LILDE
Sbjct: 124 --TTQDIVVATPGRLLEYIDAERFDCRAIEWLILDE 157
>UNIPROTKB|C9JG98 [details] [associations]
symbol:DHX58 "Probable ATP-dependent RNA helicase DHX58"
species:9606 "Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0016787 "hydrolase
activity" evidence=IEA] [GO:0009615 "response to virus"
evidence=IEA] [GO:0032480 "negative regulation of type I interferon
production" evidence=IEA] [GO:0032481 "positive regulation of type
I interferon production" evidence=IEA] [GO:0039536 "negative
regulation of RIG-I signaling pathway" evidence=IEA] [GO:0045824
"negative regulation of innate immune response" evidence=IEA]
[GO:1900245 "positive regulation of MDA-5 signaling pathway"
evidence=IEA] [GO:1900246 "positive regulation of RIG-I signaling
pathway" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA]
InterPro:IPR006935 Pfam:PF04851 GO:GO:0005524 GO:GO:0005737
GO:GO:0003677 GO:GO:0051607 GO:GO:0016787 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0032480 GO:GO:0039536
GO:GO:0045824 GO:GO:1900245 GO:GO:1900246 HGNC:HGNC:29517
HOGENOM:HOG000230992 ChiTaRS:DHX58 GO:GO:0032481 EMBL:AC105024
IPI:IPI00792703 ProteinModelPortal:C9JG98 SMR:C9JG98 STRING:C9JG98
Ensembl:ENST00000413196 ArrayExpress:C9JG98 Bgee:C9JG98
Uniprot:C9JG98
Length = 302
Score = 132 (51.5 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 46/175 (26%), Positives = 78/175 (44%)
Query: 23 RNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXX 81
R+YQ E + AL+ +N I++L TG+GKT A + + + L
Sbjct: 4 RSYQWEVIMPALEGKNIIIWLPTGAGKTRAAAYVAKRH---LETVDGAKVVVLVNRVHLV 60
Query: 82 XXXXEAIKMHTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--- 136
E + D + V GDMG A + H++L+ T ++L L
Sbjct: 61 TQHGEEFRRMLDGRWTVTTLSGDMG----PRAGFGHLARCHDLLICTAELLQMALTSPEE 116
Query: 137 -SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190
+ +L + ++++DECHH Y IM+++ L+ LP++ G+TASP
Sbjct: 117 EEHVELTVFSLIVVDECHHTHKDTVYNVIMSQYLELKLQRAQP-LPQVLGLTASP 170
>TIGR_CMR|DET_1025 [details] [associations]
symbol:DET_1025 "ribonuclease III" species:243164
"Dehalococcoides ethenogenes 195" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:CP000027 GenomeReviews:CP000027_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
TIGRFAMs:TIGR02191 HOGENOM:HOG000246808 OMA:LTHKSCK
RefSeq:YP_181741.1 ProteinModelPortal:Q3Z7Q8 STRING:Q3Z7Q8
GeneID:3229696 KEGG:det:DET1025 PATRIC:21609095
ProtClustDB:CLSK837151 BioCyc:DETH243164:GJNF-1026-MONOMER
Uniprot:Q3Z7Q8
Length = 237
Score = 118 (46.6 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 32/99 (32%), Positives = 52/99 (52%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYML--PE-IPRCYQRLEFLGDAVLDYLITVY 1204
++++ LE L F + SLL +AL H S++ P + +R+EFLGDAVL +
Sbjct: 1 MLDLTELEKSLGVKFENLSLLEQALIHTSWVNENPNHLSGSNERMEFLGDAVLGVIFADR 60
Query: 1205 LYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI 1243
LY+ +P + G LT RS V + ++ L K++
Sbjct: 61 LYHDFPDIQEGDLTRFRSLLVRRESLVRVALGINLGKYL 99
Score = 55 (24.4 bits), Expect = 3.6e-05, Sum P(2) = 3.6e-05
Identities = 30/120 (25%), Positives = 47/120 (39%)
Query: 1279 PKALGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKN 1336
P L E++ AI++D G + REV+F+ + +E + T + + R L E Q
Sbjct: 114 PANLAGAFEAVLAAIYLDKGIDATREVIFRLFKTEMERVQTLSSNIDYKSR-LQELVQAQ 172
Query: 1337 HFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393
+ SG EV ++ KK A+ A KE L+ SF
Sbjct: 173 FQLTPRYRIIDFSGPEHNHLFIAEVYTEDKVLAEGS-GRSKKEAETSAAKEALQQFENSF 231
>CGD|CAL0000056 [details] [associations]
symbol:orf19.7546 species:5476 "Candida albicans" [GO:0005634
"nucleus" evidence=IEA] [GO:0005829 "cytosol" evidence=IEA]
[GO:0000462 "maturation of SSU-rRNA from tricistronic rRNA
transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)" evidence=IEA]
[GO:0008186 "RNA-dependent ATPase activity" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0005634 GO:GO:0003723
EMBL:AACQ01000032 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
GO:GO:0006364 GO:GO:0008026 eggNOG:COG0513 InterPro:IPR014014
PROSITE:PS51195 KO:K14777 EMBL:AR550432 RefSeq:XP_719308.1
ProteinModelPortal:Q5ACU6 SMR:Q5ACU6 STRING:Q5ACU6 GeneID:3639008
KEGG:cal:CaO19.7546 Uniprot:Q5ACU6
Length = 539
Score = 95 (38.5 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 40/142 (28%), Positives = 66/142 (46%)
Query: 15 SADTLPFARN--YQLEALENALKQNTIVFL-ETGSGKTL-IAIMLLRSYAYLLRKPSPXX 70
S +++ F + Q EA+ +AL+ I+ L +TGSGKT AI +L+S + +
Sbjct: 137 SIESMKFTKPTPIQSEAIPHALEGKDIIGLAQTGSGKTAAFAIPILQSLWHAQQPYFALV 196
Query: 71 XXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL 130
+A+ L+ G G+D D A ++ M K V+V TP +
Sbjct: 197 LAPTRELTFQIKDTFDALGSSMGLRSSCIVG--GMDMMDQA--RDLMRKPHVIVATPGRI 252
Query: 131 LDGLRLSY-FKLNMIKVLILDE 151
+D L + F L +K L++DE
Sbjct: 253 MDHLEHTKGFSLKNLKYLVMDE 274
Score = 89 (36.4 bits), Expect = 7.1e-05, Sum P(2) = 7.1e-05
Identities = 26/86 (30%), Positives = 44/86 (51%)
Query: 441 VEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR-ARMQNSDYLL- 498
+ +F+ N++VAT + GLD+ S ++VI +D ++I GR AR S +
Sbjct: 405 LNKFKSNQANILVATDVAARGLDIPSVDVVINYDIPTDSKAYIHRVGRTARAGRSGKSIS 464
Query: 499 MVKSGDSTTQSRLENYLASGNKMRKE 524
++ D R+E+ L G K+ KE
Sbjct: 465 LITQYDLEMYLRIESVL--GKKLPKE 488
>UNIPROTKB|F1LQY5 [details] [associations]
symbol:F1LQY5 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0016075 "rRNA
catabolic process" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0006396 GO:GO:0003725 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 IPI:IPI00870720
Ensembl:ENSRNOT00000018032 ArrayExpress:F1LQY5 Uniprot:F1LQY5
Length = 1018
Score = 119 (46.9 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 610 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 669
Score = 107 (42.7 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLY 1206
L + E + F LL A T + + + QR+EFLGD+++ + T YL+
Sbjct: 748 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 807
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
+P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 808 IHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 845
Score = 74 (31.1 bits), Expect = 0.00021, Sum P(3) = 0.00021
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 608 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 666
Score = 66 (28.3 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 522 HLDKLIGYTFQDRCLLQLAMTHPSHHL 548
Score = 52 (23.4 bits), Expect = 7.6e-05, Sum P(3) = 7.6e-05
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 859 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 917
Query: 1338 FSMKKP 1343
K+P
Sbjct: 918 TEGKEP 923
>POMBASE|SPAC17G6.14c [details] [associations]
symbol:uap56 "ATP-dependent RNA helicase Uap56"
species:4896 "Schizosaccharomyces pombe" [GO:0000346 "transcription
export complex" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IGI] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006406 "mRNA export from nucleus" evidence=ISO] [GO:0008380
"RNA splicing" evidence=IEA] InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 PomBase:SPAC17G6.14c GO:GO:0005524 EMBL:CU329670
GO:GO:0008380 GenomeReviews:CU329670_GR GO:GO:0006397 GO:GO:0005681
GO:GO:0003723 GO:GO:0006406 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0004004 eggNOG:COG0513 HOGENOM:HOG000268797
InterPro:IPR014014 PROSITE:PS51195 KO:K12812 GO:GO:0000346
OrthoDB:EOG4H49C6 EMBL:D89270 PIR:T37846 PIR:T43199
RefSeq:NP_594261.1 ProteinModelPortal:O13792 SMR:O13792
STRING:O13792 EnsemblFungi:SPAC17G6.14c.1 GeneID:2542433
KEGG:spo:SPAC17G6.14c OMA:DAVEFNQ NextBio:20803490 Uniprot:O13792
Length = 434
Score = 108 (43.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 53/235 (22%), Positives = 104/235 (44%)
Query: 280 LIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW---EQLDGFGETIIKKFG 336
L+R+K+ K+NS + L E L++ + + F A +Q+ F T+
Sbjct: 187 LVREKILKVNSVKHFVLDECDK--LLESVDMRRDIQEVFRATPPQKQVMMFSATL----S 240
Query: 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVER 396
++ ++ + E + D++K L L + V L E + R + D+ + +
Sbjct: 241 NEIRPICKKFMQNPLEIYVDDETKLTLHG--LQQHYVKL-EEKAKNRKINDLLDSLEFNQ 297
Query: 397 VITAIVLQSLLSEL--LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVA 454
V+ + S +EL L R C + + I G G+ + R K+ + ++F + + VA
Sbjct: 298 VVIFVKSVSRANELDRLLRECNFPSICIHG---GLPQEERIKRYKAFKDFDK---RICVA 351
Query: 455 TSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNSDYLLMVKSGDSTTQ 508
T + G+D++ N+VI +D + S++ GRA R + S + +Q
Sbjct: 352 TDVFGRGIDIERVNIVINYDMPDSPDSYLHRVGRAGRFGTKGLAITFSSSEEDSQ 406
Score = 71 (30.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 16/60 (26%), Positives = 31/60 (51%)
Query: 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDEC 152
D++ ++G + + D +K++ ++V TP L +R K+N +K +LDEC
Sbjct: 148 DVRTAVFYGGINIK-QDMEAFKDKSKSPHIVVATPGRLNALVREKILKVNSVKHFVLDEC 206
>UNIPROTKB|F1NQC9 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0016075 "rRNA catabolic process" evidence=IEA] [GO:0010586
"miRNA metabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:AADN02007047
IPI:IPI00583351 Ensembl:ENSGALT00000021065 Uniprot:F1NQC9
Length = 1336
Score = 117 (46.2 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 928 ERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 987
Score = 107 (42.7 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 46/160 (28%), Positives = 76/160 (47%)
Query: 1099 VADVVEALIGAFLSTGG-ENV----G-LIFLDRIGIKVDFVNVP-YQRQFQV-HAER--- 1147
+A+ EALIGA G E G L+F D+ ++ ++N P + Q Q + +R
Sbjct: 1002 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDK-DLRDVWLNYPLHPLQLQESNTDRQLI 1060
Query: 1148 -----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLI 1201
L + E + F LL A T + + + QR+EFLGD+++ +
Sbjct: 1061 ETSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVA 1120
Query: 1202 TVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHK 1241
T YL+ +P G+LT +RS+ VNN A + + G+ +
Sbjct: 1121 TEYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQE 1160
Score = 73 (30.8 bits), Expect = 0.00061, Sum P(3) = 0.00061
Identities = 18/59 (30%), Positives = 30/59 (50%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + EG L+ + I+ N L L + +L F+
Sbjct: 926 HNERLEFLGDAVVEFLTSVHLYYLFPTLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 984
Score = 70 (29.7 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 14/27 (51%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+FRD LL A+TH S+ L
Sbjct: 840 HLDKLIGYTFRDRCLLQLAMTHPSHHL 866
Score = 52 (23.4 bits), Expect = 0.00012, Sum P(3) = 0.00012
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1177 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 1235
Query: 1338 FSMKKP 1343
K+P
Sbjct: 1236 TEGKEP 1241
>UNIPROTKB|Q8EI96 [details] [associations]
symbol:srmB "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 386 EDI-RCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF 444
ED+ R I+FV+ T V+ SL +LL ++ G+ +KK+ + + F
Sbjct: 243 EDVKRAIVFVK---TRDVVSSLEGQLLQAGIP--CAFMRGD------MEQKKRFQALSRF 291
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD--YLLMVKS 502
+G VNV++AT + G+D+ + VI FD R+ ++I GR + + + ++
Sbjct: 292 TKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEA 351
Query: 503 GDSTTQSRLENYLASGNKMR 522
D ++E Y+ K R
Sbjct: 352 HDMRIVGKIERYIEQPLKRR 371
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 38/135 (28%), Positives = 58/135 (42%)
Query: 26 QLEALENALKQNTIVF-LETGSGKTLIAIMLLRSYAYLL---RKPSPXXXXXXXXXXXXX 81
Q E L +AL+Q I+ TG+GKT A LL + +L+ R+ S
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLILTPTREL 85
Query: 82 XXXXEAIKMH--TD--LKVGKYWGDMGVDFWDGATWKEEMSKH-EVLVMTPQILLDGLRL 136
H TD L + G GV + A +E + + ++LV TP L++ L
Sbjct: 86 ASQIHRYACHLATDQGLNIAIITG--GVPY---APQEEALKGNIDILVATPGRLMEYLDK 140
Query: 137 SYFKLNMIKVLILDE 151
F + +LI+DE
Sbjct: 141 GKFSAESVDILIIDE 155
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 1371 DADKKTAKKVACKEVLKSLR 1390
+A KKT+KK A K+ K R
Sbjct: 397 EAAKKTSKKEAAKKASKIAR 416
>TIGR_CMR|SO_0947 [details] [associations]
symbol:SO_0947 "ATP-dependent RNA helicase SrmB"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 OMA:PLAMDQR
HOGENOM:HOG000268807 KO:K05590 ProtClustDB:PRK11192
RefSeq:NP_716576.1 ProteinModelPortal:Q8EI96 GeneID:1168793
KEGG:son:SO_0947 PATRIC:23521551 Uniprot:Q8EI96
Length = 420
Score = 110 (43.8 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 37/140 (26%), Positives = 67/140 (47%)
Query: 386 EDI-RCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF 444
ED+ R I+FV+ T V+ SL +LL ++ G+ +KK+ + + F
Sbjct: 243 EDVKRAIVFVK---TRDVVSSLEGQLLQAGIP--CAFMRGD------MEQKKRFQALSRF 291
Query: 445 RRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD--YLLMVKS 502
+G VNV++AT + G+D+ + VI FD R+ ++I GR + + + ++
Sbjct: 292 TKGEVNVLLATDVAARGIDIDDISHVINFDMPRSADTYIHRIGRTGRAGAKGTAISLAEA 351
Query: 503 GDSTTQSRLENYLASGNKMR 522
D ++E Y+ K R
Sbjct: 352 HDMRIVGKIERYIEQPLKRR 371
Score = 67 (28.6 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 38/135 (28%), Positives = 58/135 (42%)
Query: 26 QLEALENALKQNTIVF-LETGSGKTLIAIMLLRSYAYLL---RKPSPXXXXXXXXXXXXX 81
Q E L +AL+Q I+ TG+GKT A LL + +L+ R+ S
Sbjct: 28 QQETLPHALEQRDILARAPTGTGKT--ASFLLPALQHLIDFPRRYSGQARVLILTPTREL 85
Query: 82 XXXXEAIKMH--TD--LKVGKYWGDMGVDFWDGATWKEEMSKH-EVLVMTPQILLDGLRL 136
H TD L + G GV + A +E + + ++LV TP L++ L
Sbjct: 86 ASQIHRYACHLATDQGLNIAIITG--GVPY---APQEEALKGNIDILVATPGRLMEYLDK 140
Query: 137 SYFKLNMIKVLILDE 151
F + +LI+DE
Sbjct: 141 GKFSAESVDILIIDE 155
Score = 43 (20.2 bits), Expect = 0.00015, Sum P(3) = 0.00015
Identities = 10/20 (50%), Positives = 13/20 (65%)
Query: 1371 DADKKTAKKVACKEVLKSLR 1390
+A KKT+KK A K+ K R
Sbjct: 397 EAAKKTSKKEAAKKASKIAR 416
>GENEDB_PFALCIPARUM|PFE0925c [details] [associations]
symbol:PFE0925c "snrnp protein, putative"
species:5833 "Plasmodium falciparum" [GO:0020011 "apicoplast"
evidence=RCA] InterPro:IPR000629 InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039
PROSITE:PS51194 SMART:SM00490 GO:GO:0005524 GO:GO:0003676
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
EMBL:AL844504 InterPro:IPR014014 PROSITE:PS51195 KO:K12858
HSSP:Q58083 HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 108 (43.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 43/162 (26%), Positives = 74/162 (45%)
Query: 364 DSGLLTEKIVCLIESLLEYRGVEDIRCII-FVERVITAIVLQSLLSELLPRHCTWKTKYI 422
D G I +E L E + + ++ I+ E I V Q +++++ + T K KY
Sbjct: 935 DPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSIT-KMKYK 993
Query: 423 AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482
A G + Q ++Q + F+ +++VAT + G+DV LVI FD + + S+
Sbjct: 994 AVALHGGKAQEIREQT--LSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESY 1051
Query: 483 ---IQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKM 521
I GRA M+ + + DS L+ +L S N +
Sbjct: 1052 THRIGRTGRAGMKGLA-ISFITEHDSHLFYDLKQFLISSNNI 1092
Score = 79 (32.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 26 QLEALENALKQNTIVFL-ETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXXX 84
Q++A+ AL+ ++ + ETGSGKT ++ + SY L P
Sbjct: 725 QMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL-PPLTYETSQDGPYALVIAPS 783
Query: 85 XE-AIKMHTDL-KVGKYWGDMGVDFWDGATWKE---EMSKH-EVLVMTPQILLDGLRLSY 138
E AI+++ + K Y V G + E+ + E+++ TP L D L +Y
Sbjct: 784 RELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAY 843
Query: 139 FKLNMIKVLILDE 151
LN +ILDE
Sbjct: 844 TVLNQCNYVILDE 856
>UNIPROTKB|Q8I0W7 [details] [associations]
symbol:PFE0925c "Snrnp protein, putative" species:36329
"Plasmodium falciparum 3D7" [GO:0020011 "apicoplast" evidence=RCA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 EMBL:AL844504
InterPro:IPR014014 PROSITE:PS51195 KO:K12858 HSSP:Q58083
HOGENOM:HOG000268796 RefSeq:XP_001351742.1
ProteinModelPortal:Q8I0W7 EnsemblProtists:PFE0925c:mRNA
GeneID:813000 KEGG:pfa:PFE0925c EuPathDB:PlasmoDB:PF3D7_0518500
ProtClustDB:CLSZ2514918 Uniprot:Q8I0W7
Length = 1123
Score = 108 (43.1 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 43/162 (26%), Positives = 74/162 (45%)
Query: 364 DSGLLTEKIVCLIESLLEYRGVEDIRCII-FVERVITAIVLQSLLSELLPRHCTWKTKYI 422
D G I +E L E + + ++ I+ E I V Q +++++ + T K KY
Sbjct: 935 DPGAGKRSIEQKLEFLTEGKKKQKLQEILEMYEPPIIVFVNQKKVADIISKSIT-KMKYK 993
Query: 423 AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482
A G + Q ++Q + F+ +++VAT + G+DV LVI FD + + S+
Sbjct: 994 AVALHGGKAQEIREQT--LSAFKNAEFDILVATDVAGRGIDVHGVKLVINFDMPKDIESY 1051
Query: 483 ---IQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKM 521
I GRA M+ + + DS L+ +L S N +
Sbjct: 1052 THRIGRTGRAGMKGLA-ISFITEHDSHLFYDLKQFLISSNNI 1092
Score = 79 (32.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 36/133 (27%), Positives = 58/133 (43%)
Query: 26 QLEALENALKQNTIVFL-ETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXXX 84
Q++A+ AL+ ++ + ETGSGKT ++ + SY L P
Sbjct: 725 QMQAIPIALEMRDLIGIAETGSGKTAAFVLPMLSYVKQL-PPLTYETSQDGPYALVIAPS 783
Query: 85 XE-AIKMHTDL-KVGKYWGDMGVDFWDGATWKE---EMSKH-EVLVMTPQILLDGLRLSY 138
E AI+++ + K Y V G + E+ + E+++ TP L D L +Y
Sbjct: 784 RELAIQIYEETNKFASYCSCRTVAVVGGRNAEAQAFELRRGVEIVIGTPGRLQDCLEKAY 843
Query: 139 FKLNMIKVLILDE 151
LN +ILDE
Sbjct: 844 TVLNQCNYVILDE 856
>UNIPROTKB|E9PTR3 [details] [associations]
symbol:E9PTR3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0004525 "ribonuclease III activity" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0031054 "pre-miRNA
processing" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 CTD:29102 IPI:IPI00559397
RefSeq:NP_001101125.2 RefSeq:XP_003749268.1 UniGene:Rn.41113
Ensembl:ENSRNOT00000048026 GeneID:310159 KEGG:rno:310159
ArrayExpress:E9PTR3 Uniprot:E9PTR3
Length = 1373
Score = 119 (46.9 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 26/60 (43%), Positives = 39/60 (65%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1024
Score = 107 (42.7 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 28/98 (28%), Positives = 49/98 (50%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLY 1206
L + E + F LL A T + + + QR+EFLGD+++ + T YL+
Sbjct: 1103 LQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVATEYLF 1162
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
+P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 1163 IHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 74 (31.1 bits), Expect = 0.00053, Sum P(3) = 0.00053
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 963 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 66 (28.3 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 877 HLDKLIGYTFQDRCLLQLAMTHPSHHL 903
Score = 52 (23.4 bits), Expect = 0.00020, Sum P(3) = 0.00020
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 1272
Query: 1338 FSMKKP 1343
K+P
Sbjct: 1273 TEGKEP 1278
>DICTYBASE|DDB_G0288501 [details] [associations]
symbol:ddx42 "DEAD/DEAH box helicase" species:44689
"Dictyostelium discoideum" [GO:0008026 "ATP-dependent helicase
activity" evidence=IEA] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490
dictyBase:DDB_G0288501 GO:GO:0005524 GO:GO:0005634
GenomeReviews:CM000154_GR GO:GO:0003723 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 EMBL:AAFI02000112 GO:GO:0008026
eggNOG:COG0513 InterPro:IPR014014 PROSITE:PS51195 HSSP:P09052
KO:K12835 RefSeq:XP_636700.1 ProteinModelPortal:Q54IV3
STRING:Q54IV3 EnsemblProtists:DDB0233432 GeneID:8626657
KEGG:ddi:DDB_G0288501 OMA:DRDKRGG Uniprot:Q54IV3
Length = 986
Score = 95 (38.5 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 37/133 (27%), Positives = 61/133 (45%)
Query: 26 QLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPS-PXXXXXXXXXXXXXXX 83
Q +A+ AL ++ I +TGSGKT A + S ++++ +P
Sbjct: 332 QKQAIPIALSGRDLIAIAKTGSGKT--ATFIWPSISHIMDQPYLEKGDGPIALFLAPTRE 389
Query: 84 XXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKH-----EVLVMTPQILLDGLRLSY 138
I + T LK KY+ + G + K++ K E++V TP L+D ++L
Sbjct: 390 LAHQIYLET-LKYSKYFKLKTTVLYGGVS-KQQQCKELKAGCEIIVATPGRLIDMIKLKA 447
Query: 139 FKLNMIKVLILDE 151
KLN + L+LDE
Sbjct: 448 TKLNRVSYLVLDE 460
Score = 90 (36.7 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 25/98 (25%), Positives = 49/98 (50%)
Query: 391 IIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVN 450
+IFV + L S L++ + CT + G+ + I+ +++ ++ F+ G +N
Sbjct: 554 LIFVSTKVAVEQLSSNLTKFGFQTCT-----LHGDKNQIE------RSQTIQTFKEGKIN 602
Query: 451 VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
+++AT + GLD+ V+ +D SR + S GR
Sbjct: 603 ILIATDVAARGLDIPLIKNVVNYDTSRDIESHTHRIGR 640
>UNIPROTKB|F1SP38 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:CU633306
EMBL:FP325179 EMBL:FP326694 Ensembl:ENSSSCT00000018300
ArrayExpress:F1SP38 Uniprot:F1SP38
Length = 1328
Score = 121 (47.7 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 920 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 979
Query: 1247 -SHELYKRINIT---VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNRE 1302
+L + ++ + FE L +G+ + S+ + G ++ F D RE
Sbjct: 980 HGPDLCRESDLRHAMANCFEAL-IGAVYLEGSLEEAKQLFGRLL-------FNDPDL-RE 1030
Query: 1303 VVFQ-SIRPLL--EPMITPETMRFHPV-RELTEY 1332
V + PL EP + + PV ++LTE+
Sbjct: 1031 VWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 1064
Score = 108 (43.1 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 43/162 (26%), Positives = 75/162 (46%)
Query: 1099 VADVVEALIGAFLSTGG-ENV----GLIFLDRIGIKVDFVNVP-YQRQFQV-HAER---- 1147
+A+ EALIGA G E G + + ++ ++N P + Q Q + +R
Sbjct: 994 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIE 1053
Query: 1148 ----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLIT 1202
L + E + F LL A T + + + QR+EFLGD+++ + T
Sbjct: 1054 TSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1113
Query: 1203 VYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
YL+ +P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 1114 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1155
Score = 74 (31.1 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 918 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 976
Score = 66 (28.3 bits), Expect = 0.00025, Sum P(2) = 0.00025
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 832 HLDKLIGYTFQDRCLLQLAMTHPSHHL 858
Score = 52 (23.4 bits), Expect = 0.00038, Sum P(3) = 0.00038
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1169 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 1227
Query: 1338 FSMKKP 1343
K+P
Sbjct: 1228 TEGKEP 1233
>UNIPROTKB|E1BGY0 [details] [associations]
symbol:DROSHA "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0031054 "pre-miRNA processing" evidence=IEA]
[GO:0010586 "miRNA metabolic process" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0003725 "double-stranded RNA
binding" evidence=IEA] HAMAP:MF_00104 InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 Gene3D:3.30.160.20 GO:GO:0005622
GO:GO:0003725 GO:GO:0010586 GO:GO:0031054 GO:GO:0016075
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 OMA:SGKEKNY EMBL:DAAA02050706
IPI:IPI00718255 Ensembl:ENSBTAT00000023346 Uniprot:E1BGY0
Length = 1368
Score = 121 (47.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 960 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1019
Query: 1247 -SHELYKRINIT---VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNRE 1302
+L + ++ + FE L +G+ + S+ + G ++ F D RE
Sbjct: 1020 HGPDLCRESDLRHAMANCFEAL-IGAVYLEGSLEEAKQLFGRLL-------FNDPDL-RE 1070
Query: 1303 VVFQ-SIRPLL--EPMITPETMRFHPV-RELTEY 1332
V + PL EP + + PV ++LTE+
Sbjct: 1071 VWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 1104
Score = 108 (43.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 43/162 (26%), Positives = 75/162 (46%)
Query: 1099 VADVVEALIGAFLSTGG-ENV----GLIFLDRIGIKVDFVNVP-YQRQFQV-HAER---- 1147
+A+ EALIGA G E G + + ++ ++N P + Q Q + +R
Sbjct: 1034 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIE 1093
Query: 1148 ----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLIT 1202
L + E + F LL A T + + + QR+EFLGD+++ + T
Sbjct: 1094 TSPVLQKLTEFEDAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1153
Query: 1203 VYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
YL+ +P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 1154 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1195
Score = 74 (31.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 958 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1016
Score = 66 (28.3 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 870 HLDKLIGYTFQDRCLLQLAMTHPSHHL 896
Score = 52 (23.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1209 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 1267
Query: 1338 FSMKKP 1343
K+P
Sbjct: 1268 TEGKEP 1273
>FB|FBgn0026722 [details] [associations]
symbol:drosha "drosha" species:7227 "Drosophila melanogaster"
[GO:0031053 "primary miRNA processing" evidence=ISS;IMP]
[GO:0005634 "nucleus" evidence=ISS] [GO:0004525 "ribonuclease III
activity" evidence=ISS;NAS] [GO:0003725 "double-stranded RNA
binding" evidence=IEA;ISS] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0022008 "neurogenesis" evidence=IMP] [GO:0030727
"germarium-derived female germ-line cyst formation" evidence=IMP]
[GO:0007294 "germarium-derived oocyte fate determination"
evidence=IMP] HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 EMBL:AE013599 GO:GO:0007294 GO:GO:0022008
Gene3D:3.30.160.20 GO:GO:0005622 GO:GO:0003725 GO:GO:0016075
GO:GO:0030727 GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065
eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 KO:K03685 HSSP:O67082 OMA:RFHKSLD
CTD:29102 ChiTaRS:DROSHA EMBL:AF116572 EMBL:BT023503
RefSeq:NP_477436.1 UniGene:Dm.4482 SMR:Q7KNF1 IntAct:Q7KNF1
STRING:Q7KNF1 EnsemblMetazoa:FBtr0088850 GeneID:35747
KEGG:dme:Dmel_CG8730 UCSC:CG8730-RA FlyBase:FBgn0026722
InParanoid:Q7KNF1 OrthoDB:EOG4BRV1K GenomeRNAi:35747 NextBio:795024
Uniprot:Q7KNF1
Length = 1327
Score = 124 (48.7 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 37/124 (29%), Positives = 58/124 (46%)
Query: 1148 LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPR-CYQRLEFLGDAVLDYLITVYLY 1206
L + E + F+ LL A T S + QRLEFLGD VL + + YLY
Sbjct: 972 LKELTKFEDSIGIKFKHIRLLARAFTDRSIGFTHLTLGSNQRLEFLGDTVLQLICSEYLY 1031
Query: 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266
+P G+L+ +RS+ VNN A+ G+ K+ ++A+ + + D E L
Sbjct: 1032 RHFPEHHEGHLSLLRSSLVNNRTQAVVCDDLGMPKYAVYANPKADLKTKDRADLLEAF-L 1090
Query: 1267 GSTF 1270
G+ +
Sbjct: 1091 GALY 1094
Score = 74 (31.1 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 19/59 (32%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ +S LF + EG L+ + I+ N L L + +L F+
Sbjct: 831 HNERLEFLGDAVVEFLSSIHLFFMFPELEEGGLATYRAAIVQNQHLALLAKKLQLEEFM 889
Score = 45 (20.9 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 12/29 (41%), Positives = 17/29 (58%)
Query: 1099 VADVVEALIGAFLSTGGENVG-LIFLDRI 1126
+A+ EAL+GA L GG V +F D +
Sbjct: 907 MANCFEALMGALLLDGGIKVADEVFTDAL 935
Score = 37 (18.1 bits), Expect = 0.00027, Sum P(4) = 0.00027
Identities = 8/22 (36%), Positives = 10/22 (45%)
Query: 159 HQYACIMTEFYHRLLETGDSNL 180
H+ +H LLE D NL
Sbjct: 502 HELDIFFKYLFHELLELVDFNL 523
>MGI|MGI:1261425 [details] [associations]
symbol:Drosha "drosha, ribonuclease type III" species:10090
"Mus musculus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003725
"double-stranded RNA binding" evidence=IEA] [GO:0004518 "nuclease
activity" evidence=IEA] [GO:0004519 "endonuclease activity"
evidence=IEA] [GO:0004521 "endoribonuclease activity" evidence=IDA]
[GO:0004525 "ribonuclease III activity" evidence=IEA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006396 "RNA processing" evidence=IEA] [GO:0010468 "regulation
of gene expression" evidence=IMP] [GO:0010586 "miRNA metabolic
process" evidence=IMP] [GO:0016075 "rRNA catabolic process"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0031054 "pre-miRNA processing" evidence=IDA] [GO:0042254
"ribosome biogenesis" evidence=IEA] [GO:0046872 "metal ion binding"
evidence=IEA] InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 MGI:MGI:1261425 GO:GO:0005730 GO:GO:0046872
Gene3D:3.30.160.20 GO:GO:0042254 GO:GO:0003725 GO:GO:0010586
GO:GO:0031054 GO:GO:0004521 GO:GO:0016075 GO:GO:0004525
Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
PANTHER:PTHR11207 GeneTree:ENSGT00690000102147 KO:K03685
HSSP:O67082 CTD:29102 HOGENOM:HOG000122291 OMA:SGKEKNY
OrthoDB:EOG4VQ9NG ChiTaRS:DROSHA EMBL:AK144147 EMBL:AK148640
EMBL:BC088999 IPI:IPI00336345 RefSeq:NP_001123621.1
RefSeq:NP_081075.3 UniGene:Mm.293142 ProteinModelPortal:Q5HZJ0
SMR:Q5HZJ0 STRING:Q5HZJ0 PhosphoSite:Q5HZJ0 PRIDE:Q5HZJ0
Ensembl:ENSMUST00000090292 Ensembl:ENSMUST00000169061 GeneID:14000
KEGG:mmu:14000 UCSC:uc007via.2 InParanoid:Q5HZJ0 NextBio:284892
Bgee:Q5HZJ0 Genevestigator:Q5HZJ0 Uniprot:Q5HZJ0
Length = 1373
Score = 121 (47.7 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 47/154 (30%), Positives = 78/154 (50%)
Query: 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHA 1246
+RLEFLGDAV+++L +V+LY +P L G L R+A V N A+ + K L + +L+A
Sbjct: 965 ERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFMLYA 1024
Query: 1247 -SHELYKRINIT---VDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNRE 1302
+L + ++ + FE L +G+ + S+ + G ++ F D RE
Sbjct: 1025 HGPDLCRESDLRHAMANCFEAL-IGAVYLEGSLEEAKQLFGRLL-------FNDPDL-RE 1075
Query: 1303 VVFQ-SIRPLL--EPMITPETMRFHPV-RELTEY 1332
V + PL EP + + PV ++LTE+
Sbjct: 1076 VWLNYPLHPLQLQEPNTDRQLIETSPVLQKLTEF 1109
Score = 108 (43.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 43/162 (26%), Positives = 75/162 (46%)
Query: 1099 VADVVEALIGAFLSTGG-ENV----GLIFLDRIGIKVDFVNVP-YQRQFQV-HAER---- 1147
+A+ EALIGA G E G + + ++ ++N P + Q Q + +R
Sbjct: 1039 MANCFEALIGAVYLEGSLEEAKQLFGRLLFNDPDLREVWLNYPLHPLQLQEPNTDRQLIE 1098
Query: 1148 ----LVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLIT 1202
L + E + F LL A T + + + QR+EFLGD+++ + T
Sbjct: 1099 TSPVLQKLTEFEEAIGVIFTHVRLLARAFTLRTVGFNHLTLGHNQRMEFLGDSIMQLVAT 1158
Query: 1203 VYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHIL 1244
YL+ +P G+LT +RS+ VNN A + + G+ ++ +
Sbjct: 1159 EYLFIHFPDHHEGHLTLLRSSLVNNRTQAKVAEELGMQEYAI 1200
Score = 74 (31.1 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 18/59 (30%), Positives = 31/59 (52%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFI 1053
H E LE LGD+ +++ S L+ + + EG L+ + I+ N L L + +L F+
Sbjct: 963 HNERLEFLGDAVVEFLTSVHLYYLFPSLEEGGLATYRTAIVQNQHLAMLAKKLELDRFM 1021
Score = 66 (28.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 13/27 (48%), Positives = 19/27 (70%)
Query: 1153 HLESLLNYSFRDPSLLVEALTHGSYML 1179
HL+ L+ Y+F+D LL A+TH S+ L
Sbjct: 877 HLDKLIGYTFQDRCLLQLAMTHPSHHL 903
Score = 52 (23.4 bits), Expect = 0.00042, Sum P(3) = 0.00042
Identities = 16/66 (24%), Positives = 28/66 (42%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRELTEYCQKNH 1337
K L D++ES A+++D F ++ P L+ I + P +L + C
Sbjct: 1214 KTLADLLESFIAALYIDKDLEYVHTFMNVCFFPRLKEFILNQDWN-DPKSQLQQCCLTLR 1272
Query: 1338 FSMKKP 1343
K+P
Sbjct: 1273 TEGKEP 1278
>TIGR_CMR|GSU_2228 [details] [associations]
symbol:GSU_2228 "ribonuclease III" species:243231
"Geobacter sulfurreducens PCA" [GO:0004525 "ribonuclease III
activity" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
HAMAP:MF_00104 InterPro:IPR000999 InterPro:IPR001159
InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517
PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358 SMART:SM00535
InterPro:IPR014720 GO:GO:0005737 GO:GO:0046872 GO:GO:0006397
Gene3D:3.30.160.20 EMBL:AE017180 GenomeReviews:AE017180_GR
GO:GO:0003725 GO:GO:0008033 GO:GO:0090305 GO:GO:0016075
GO:GO:0019843 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 PANTHER:PTHR11207 KO:K03685
HOGENOM:HOG000246809 TIGRFAMs:TIGR02191 OMA:LTHKSCK
RefSeq:NP_953277.1 ProteinModelPortal:Q74AX1 GeneID:2687587
KEGG:gsu:GSU2228 PATRIC:22027311 ProtClustDB:CLSK828768
BioCyc:GSUL243231:GH27-2184-MONOMER Uniprot:Q74AX1
Length = 248
Score = 125 (49.1 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 33/82 (40%), Positives = 43/82 (52%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYM----LPEIPRCYQRLEFLGDAVLDYLITVYLYNKY 1209
LE+ + Y F D L EALTH S++ P +P +RLEF GDA+L + I L Y
Sbjct: 19 LETSIGYRFTDRRFLDEALTHRSWLNEVRSPTVPD-NERLEFFGDAILGFCIGKMLLRHY 77
Query: 1210 PGLSPGYLTDMRSASVNNDCYA 1231
P G L M+SA V + A
Sbjct: 78 PESREGALARMKSALVGEETLA 99
Score = 38 (18.4 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 26/113 (23%), Positives = 43/113 (38%)
Query: 1282 LGDIIESLAGAIFVDSGCN--REVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFS 1339
L + +E+L A+++D G +V P L + R + E Q +
Sbjct: 129 LANALEALLAAMYLDGGMAPVERLVDAWFGPRLAGVAAGIKGRDFKT-DFQELAQAQYGG 187
Query: 1340 MKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389
+ + V SG A TV RL KK A++ A ++ L+ L
Sbjct: 188 LPRYVLVDTSGPAHDLRFTVAAYVGERLLGQG-TGRSKKEAEQAAARQCLERL 239
>SGD|S000001767 [details] [associations]
symbol:TIF1 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;IMP;IDA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] [GO:0006413 "translational
initiation" evidence=IEA;IMP;IDA] [GO:0006412 "translation"
evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP;IDA] [GO:0005840 "ribosome" evidence=TAS] [GO:0016281
"eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0005524 "ATP binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 SGD:S000001767
SGD:S000003674 GO:GO:0005524 GO:GO:0005737 EMBL:BK006943
EMBL:BK006944 GO:GO:0003743 EMBL:X87371 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 KO:K03854
eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 92 (37.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 434 RKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
+++++ I++EFR G ++++T +L G+DVQ +LVI +D ++I GR
Sbjct: 296 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
Score = 80 (33.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 43 ETGSGKT-LIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWG 101
++G+GKT +I L+ ++ P A+ H D+KV G
Sbjct: 67 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 126
Query: 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
G F + A E + +++V TP + D ++ F+ + IK+ ILDE
Sbjct: 127 --GTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 171
>SGD|S000003674 [details] [associations]
symbol:TIF2 "Translation initiation factor eIF4A"
species:4932 "Saccharomyces cerevisiae" [GO:0003743 "translation
initiation factor activity" evidence=IEA;ISS;IDA;TAS] [GO:0005886
"plasma membrane" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;ISS;IDA] [GO:0006446 "regulation of translational
initiation" evidence=ISS] [GO:0005840 "ribosome" evidence=TAS]
[GO:0016281 "eukaryotic translation initiation factor 4F complex"
evidence=IGI;ISS] [GO:0004004 "ATP-dependent RNA helicase activity"
evidence=IMP] [GO:0004386 "helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0006412 "translation"
evidence=IEA] [GO:0006413 "translational initiation"
evidence=IEA;TAS] [GO:0008026 "ATP-dependent helicase activity"
evidence=IEA] [GO:0016787 "hydrolase activity" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000629 InterPro:IPR001650 InterPro:IPR011545
Pfam:PF00270 Pfam:PF00271 PROSITE:PS00039 PROSITE:PS51194
SMART:SM00490 SGD:S000001767 SGD:S000003674 GO:GO:0005524
GO:GO:0005737 EMBL:BK006943 EMBL:BK006944 GO:GO:0003743 EMBL:X87371
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
KO:K03854 eggNOG:COG0513 HOGENOM:HOG000268797 InterPro:IPR014014
PROSITE:PS51195 GeneTree:ENSGT00530000062880 EMBL:U25436 KO:K03257
OMA:IKMFILD OrthoDB:EOG4PG98F EMBL:X12813 EMBL:X12814 EMBL:X58099
EMBL:Z49413 EMBL:Z28284 PIR:S05835 RefSeq:NP_012397.1
RefSeq:NP_012985.3 RefSeq:NP_012987.3 PDB:1FUK PDB:1FUU PDB:1QDE
PDB:1QVA PDB:2VSO PDB:2VSX PDBsum:1FUK PDBsum:1FUU PDBsum:1QDE
PDBsum:1QVA PDBsum:2VSO PDBsum:2VSX ProteinModelPortal:P10081
SMR:P10081 DIP:DIP-4571N IntAct:P10081 MINT:MINT-546056
STRING:P10081 SWISS-2DPAGE:P10081 PaxDb:P10081 EnsemblFungi:YJL138C
EnsemblFungi:YKR059W GeneID:853303 GeneID:853933 GeneID:853935
KEGG:sce:YJL138C KEGG:sce:YKR059W KEGG:sce:YKR061W SABIO-RK:P10081
EvolutionaryTrace:P10081 NextBio:973627 Genevestigator:P10081
GermOnline:YJL138C GermOnline:YKR059W Uniprot:P10081
Length = 395
Score = 92 (37.4 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 18/55 (32%), Positives = 35/55 (63%)
Query: 434 RKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
+++++ I++EFR G ++++T +L G+DVQ +LVI +D ++I GR
Sbjct: 296 QQERDTIMKEFRSGSSRILISTDLLARGIDVQQVSLVINYDLPANKENYIHRIGR 350
Score = 80 (33.2 bits), Expect = 0.00054, Sum P(2) = 0.00054
Identities = 28/110 (25%), Positives = 48/110 (43%)
Query: 43 ETGSGKT-LIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXXXXEAIKMHTDLKVGKYWG 101
++G+GKT +I L+ ++ P A+ H D+KV G
Sbjct: 67 QSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDIKVHACIG 126
Query: 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
G F + A E + +++V TP + D ++ F+ + IK+ ILDE
Sbjct: 127 --GTSFVEDA---EGLRDAQIVVGTPGRVFDNIQRRRFRTDKIKMFILDE 171
>SGD|S000002740 [details] [associations]
symbol:IRC3 "Putative RNA helicase of the DEAH/D-box family"
species:4932 "Saccharomyces cerevisiae" [GO:0008150
"biological_process" evidence=ND] [GO:0005739 "mitochondrion"
evidence=IEA;IDA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0016787 "hydrolase activity" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0004386 "helicase activity" evidence=IEA] [GO:0005524 "ATP
binding" evidence=IEA] [GO:0004004 "ATP-dependent RNA helicase
activity" evidence=ISS] InterPro:IPR001650 InterPro:IPR006935
Pfam:PF00271 Pfam:PF04851 PROSITE:PS51194 SMART:SM00490
SGD:S000002740 GO:GO:0005739 GO:GO:0005524 GO:GO:0003677
EMBL:BK006938 InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192
EMBL:U32517 GO:GO:0004004 eggNOG:COG1061 HOGENOM:HOG000180925
OrthoDB:EOG43JGDS PIR:S59797 RefSeq:NP_010619.3 RefSeq:NP_010623.3
HSSP:P56981 ProteinModelPortal:Q06683 SMR:Q06683 DIP:DIP-5241N
MINT:MINT-536971 STRING:Q06683 PaxDb:Q06683 EnsemblFungi:YDR332W
GeneID:851932 GeneID:851936 KEGG:sce:YDR332W KEGG:sce:YDR336W
CYGD:YDR332w OMA:ILVHRRE NextBio:969995 Genevestigator:Q06683
GermOnline:YDR332W Uniprot:Q06683
Length = 689
Score = 103 (41.3 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 47/179 (26%), Positives = 77/179 (43%)
Query: 20 PFARNYQLEALE---NALKQNTI---VFLETGSGKTLI---AIMLLRSYAYLLRKPSPXX 70
P R+YQ +A++ N+++Q T V L TG GKT+I I LR + R+ +
Sbjct: 31 PVLRDYQQDAIDACVNSIRQGTKRIGVSLATGGGKTVIFSNLINQLRQNYFKERQGNFKS 90
Query: 71 XXXXXXXXXXXXXXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL 130
K+ DLKV G D D +V+V + Q L
Sbjct: 91 LILVHRRELALQATATLKKIFPDLKVHIEMGKYDCDIEDS----------DVIVASVQTL 140
Query: 131 LDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTAS 189
+ RL + N + ++I+DE HH+ + Y I+ F T ++ +P + G +A+
Sbjct: 141 IR--RLHKYDTNSVNLIIIDEAHHSVA-NSYRSILDHFK---ASTAETKIP-VIGFSAT 192
Score = 74 (31.1 bits), Expect = 0.00063, Sum P(2) = 0.00063
Identities = 15/60 (25%), Positives = 35/60 (58%)
Query: 436 KQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA-RMQNS 494
+++ I+++F+ G V++ I EG D+ + + +++ P+++ IQ GR R+ +S
Sbjct: 316 ERDNIIQKFKNGETEVLMNCGIFTEGTDMPNIDCILLCRPTKSRSLLIQMIGRGLRLHHS 375
>WB|WBGene00009163 [details] [associations]
symbol:drsh-1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0004525 "ribonuclease
III activity" evidence=IEA] [GO:0006396 "RNA processing"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0005622 "intracellular" evidence=IEA] [GO:0016075
"rRNA catabolic process" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007052 "mitotic spindle organization" evidence=IMP]
[GO:0000910 "cytokinesis" evidence=IMP] InterPro:IPR000999
InterPro:IPR001159 InterPro:IPR011907 Pfam:PF00035 Pfam:PF00636
PROSITE:PS00517 PROSITE:PS50137 PROSITE:PS50142 SMART:SM00358
SMART:SM00535 InterPro:IPR014720 GO:GO:0005634 GO:GO:0009792
GO:GO:0030154 GO:GO:0007052 GO:GO:0046872 Gene3D:3.30.160.20
GO:GO:0007506 GO:GO:0000910 GO:GO:0003725 GO:GO:0016075
GO:GO:0019953 GO:GO:0006364 GO:GO:0004525 Gene3D:1.10.1520.10
SUPFAM:SSF69065 eggNOG:COG0571 GO:GO:0031053 PANTHER:PTHR11207
GeneTree:ENSGT00690000102147 EMBL:Z81070 HOGENOM:HOG000154167
EMBL:AF160248 PIR:T21420 RefSeq:NP_001122460.2 RefSeq:NP_492599.1
ProteinModelPortal:O01326 SMR:O01326 STRING:O01326 PaxDb:O01326
EnsemblMetazoa:F26E4.10a GeneID:172830 KEGG:cel:CELE_F26E4.10
UCSC:F26E4.10a CTD:172830 WormBase:F26E4.10a WormBase:F26E4.10b
InParanoid:O01326 OMA:RFHKSLD NextBio:877175 Uniprot:O01326
Length = 1086
Score = 114 (45.2 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 27/97 (27%), Positives = 55/97 (56%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLYNKYPGL 1212
LE L F + LL +A T + ++ + + QRLE+LGD+VL +++ +LY ++P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHE 1249
G+++ +R++ V+N A+ G + ++ A ++
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYK 932
Score = 63 (27.2 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
H E LE LGD+ ++ S L+ ++ EG L+ + ++ N L L
Sbjct: 689 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATL 737
Score = 57 (25.1 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRE-LTEYCQKN 1336
K D++E+ GA++VD G F I P L+ I E+ +++ + L ++C
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFI--ESEKWNDAKSHLQQWC--- 993
Query: 1337 HFSMKKPVASR--ISGKAAVTVEVQANGRLFE 1366
+M+ P +S + + +E N R+F+
Sbjct: 994 -LAMRDPSSSEPDMPEYRVLGIEGPTNNRIFK 1024
Score = 42 (19.8 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 415 CTWKTKYIAGNNSGIQCQSRKKQN 438
C K Y AG + I C+ +N
Sbjct: 284 CGLKHGYYAGEDKAIDCKKSNGEN 307
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 870 VTTYKKHYEERYGIQLCFDREPLLN--GRRIFHVQNYLSKCRQQKQ 913
V YK + +R I+L + G I HV+N ++ C +++
Sbjct: 613 VIEYK--FNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRK 656
>UNIPROTKB|O01326 [details] [associations]
symbol:drsh-1 "Ribonuclease 3" species:6239 "Caenorhabditis
elegans" [GO:0005634 "nucleus" evidence=IC] [GO:0031053 "primary
miRNA processing" evidence=IMP] [GO:0019953 "sexual reproduction"
evidence=IMP] [GO:0004525 "ribonuclease III activity" evidence=IMP]
InterPro:IPR000999 InterPro:IPR001159 InterPro:IPR011907
Pfam:PF00035 Pfam:PF00636 PROSITE:PS00517 PROSITE:PS50137
PROSITE:PS50142 SMART:SM00358 SMART:SM00535 InterPro:IPR014720
GO:GO:0005634 GO:GO:0009792 GO:GO:0030154 GO:GO:0007052
GO:GO:0046872 Gene3D:3.30.160.20 GO:GO:0007506 GO:GO:0000910
GO:GO:0003725 GO:GO:0016075 GO:GO:0019953 GO:GO:0006364
GO:GO:0004525 Gene3D:1.10.1520.10 SUPFAM:SSF69065 eggNOG:COG0571
GO:GO:0031053 PANTHER:PTHR11207 GeneTree:ENSGT00690000102147
EMBL:Z81070 HOGENOM:HOG000154167 EMBL:AF160248 PIR:T21420
RefSeq:NP_001122460.2 RefSeq:NP_492599.1 ProteinModelPortal:O01326
SMR:O01326 STRING:O01326 PaxDb:O01326 EnsemblMetazoa:F26E4.10a
GeneID:172830 KEGG:cel:CELE_F26E4.10 UCSC:F26E4.10a CTD:172830
WormBase:F26E4.10a WormBase:F26E4.10b InParanoid:O01326 OMA:RFHKSLD
NextBio:877175 Uniprot:O01326
Length = 1086
Score = 114 (45.2 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 27/97 (27%), Positives = 55/97 (56%)
Query: 1154 LESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY-QRLEFLGDAVLDYLITVYLYNKYPGL 1212
LE L F + LL +A T + ++ + + QRLE+LGD+VL +++ +LY ++P
Sbjct: 836 LEERLGIQFNNIRLLAKAFTRRNIPNNDLTKGHNQRLEWLGDSVLQLIVSDFLYRRFPYH 895
Query: 1213 SPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHE 1249
G+++ +R++ V+N A+ G + ++ A ++
Sbjct: 896 HEGHMSLLRTSLVSNQTQAVVCDDLGFTEFVIKAPYK 932
Score = 63 (27.2 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKL 1043
H E LE LGD+ ++ S L+ ++ EG L+ + ++ N L L
Sbjct: 689 HNERLEYLGDAVVELIVSHHLYFMLTHHFEGGLATYRTALVQNRNLATL 737
Score = 57 (25.1 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 23/92 (25%), Positives = 44/92 (47%)
Query: 1280 KALGDIIESLAGAIFVDSGCNREVVFQSIR--PLLEPMITPETMRFHPVRE-LTEYCQKN 1336
K D++E+ GA++VD G F I P L+ I E+ +++ + L ++C
Sbjct: 939 KDKADLVEAFIGALYVDRGIEHCRAFIRIVFCPRLKHFI--ESEKWNDAKSHLQQWC--- 993
Query: 1337 HFSMKKPVASR--ISGKAAVTVEVQANGRLFE 1366
+M+ P +S + + +E N R+F+
Sbjct: 994 -LAMRDPSSSEPDMPEYRVLGIEGPTNNRIFK 1024
Score = 42 (19.8 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 8/24 (33%), Positives = 11/24 (45%)
Query: 415 CTWKTKYIAGNNSGIQCQSRKKQN 438
C K Y AG + I C+ +N
Sbjct: 284 CGLKHGYYAGEDKAIDCKKSNGEN 307
Score = 37 (18.1 bits), Expect = 0.00073, Sum P(5) = 0.00073
Identities = 12/46 (26%), Positives = 22/46 (47%)
Query: 870 VTTYKKHYEERYGIQLCFDREPLLN--GRRIFHVQNYLSKCRQQKQ 913
V YK + +R I+L + G I HV+N ++ C +++
Sbjct: 613 VIEYK--FNDRRVIELALMHSSFKSHYGTPIDHVKNMITNCGYRRK 656
>UNIPROTKB|F6QFS2 [details] [associations]
symbol:F6QFS2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0008026 "ATP-dependent helicase activity" evidence=IEA]
[GO:0005524 "ATP binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] InterPro:IPR011545 Pfam:PF00270
GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001 SMART:SM00487
PROSITE:PS51192 GO:GO:0008026 GeneTree:ENSGT00640000091530
EMBL:DAAA02052960 EMBL:DAAA02052959 IPI:IPI00843333
Ensembl:ENSBTAT00000043352 OMA:SHERQLE Uniprot:F6QFS2
Length = 373
Score = 121 (47.7 bits), Expect = 0.00083, P = 0.00083
Identities = 46/168 (27%), Positives = 70/168 (41%)
Query: 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXX 82
R+YQL AL NT+V L TG GKT IA +++ Y + PS
Sbjct: 98 RDYQLHIARTALFCNTLVCLPTGLGKTFIAAVVM--YNFYRWFPS-GKVVFMAPTKPLVT 154
Query: 83 XXXEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN 142
EA + + +M T KE S VL +TPQ++++ L
Sbjct: 155 QQIEACYRVMGIPQS-HMAEM-TGSTQAFTRKEIWSSKRVLFLTPQVMVNDLSRGACPAA 212
Query: 143 MIKVLILDECHHARGKHQYA--CIMTEFYHRLLETGDSNLPRIFGMTA 188
IK L++DE H A G + Y ++ FY + + +P + + A
Sbjct: 213 EIKCLVIDEAHKALGNYAYCQVILLKIFYSQNFRLLNLRIPPVSSIKA 260
>WB|WBGene00011032 [details] [associations]
symbol:R05D11.4 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0004386
"helicase activity" evidence=IEA] [GO:0005524 "ATP binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA] [GO:0016787
"hydrolase activity" evidence=IEA] [GO:0008026 "ATP-dependent
helicase activity" evidence=IEA] InterPro:IPR001650
InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271 PROSITE:PS51194
SMART:SM00490 GO:GO:0005524 GO:GO:0003676 InterPro:IPR014001
SMART:SM00487 PROSITE:PS51192 GO:GO:0008026 eggNOG:COG0513
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081
GeneTree:ENSGT00550000074863 HOGENOM:HOG000242486 KO:K14779
OMA:NVMKQSG EMBL:Z75546 PIR:T23922 RefSeq:NP_492326.1
ProteinModelPortal:Q21736 SMR:Q21736 STRING:Q21736 PaxDb:Q21736
EnsemblMetazoa:R05D11.4.1 EnsemblMetazoa:R05D11.4.2 GeneID:172651
KEGG:cel:CELE_R05D11.4 UCSC:R05D11.4 CTD:172651 WormBase:R05D11.4
InParanoid:Q21736 NextBio:876429 Uniprot:Q21736
Length = 581
Score = 118 (46.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 35/98 (35%), Positives = 53/98 (54%)
Query: 391 IIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVN 450
++FV+ A+ L LLS + K I NSG +S K+++E +E FRRG +
Sbjct: 377 LVFVQSKDRAVQLVKLLSAI---DSNLKVDSI---NSG---KSDKERDETMERFRRGEIW 427
Query: 451 VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
V+V T +L GLD+ LVI +D ++ S+I GR
Sbjct: 428 VLVCTELLGRGLDLSDVGLVINYDLPTSIVSYIHRVGR 465
Score = 55 (24.4 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 27/150 (18%), Positives = 62/150 (41%)
Query: 5 SMESDTTEEVSADTLPFARNYQLEALENAL-KQNTIVFLETGSGKTL-IAIMLLRSYAYL 62
SM +S +++ Q++++ ++N + TGSGKTL A+ ++ L
Sbjct: 132 SMSPSLLNRLSENSIRQPSPIQMQSIPFMTERRNVLASAPTGSGKTLAFALPVIDEILEL 191
Query: 63 LRKPSPXXXXXXXXXXXXXXXXXE-AIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHE 121
++ E A + +T+ KY + + + + + ++ +
Sbjct: 192 KQRADYSSSNSSKLLAVVLEPTRELAAQTYTEFL--KYCANTSISAANFSGEETDIQHAD 249
Query: 122 VLVMTPQILLDGLRLSYFKLNMIKVLILDE 151
+LV TP ++ L + ++ L++DE
Sbjct: 250 ILVSTPNRIV--FHLDKIDTSSLRWLVVDE 277
>UNIPROTKB|Q8EBV7 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase DEAD box family"
species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 90 (36.7 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
S+ + ++++EF++GLV V+VAT + GLD+ VI F+ +I GR
Sbjct: 280 SQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGR 335
Score = 80 (33.2 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 37/138 (26%), Positives = 62/138 (44%)
Query: 26 QLEALENAL-KQNTIVFLETGSGKTL-IAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXX 83
Q+EA+ L KQ+ + +TG+GKT A+ +L+ LL +
Sbjct: 28 QVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ----LLMADNQSDHAAKAIRALVLVP 83
Query: 84 XXE-AIKMH---------TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDG 133
E A+++ TD++VG +G + ++ A + + +VL+ TP LLD
Sbjct: 84 TRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQ-AVFNAGI---DVLIATPGRLLDH 139
Query: 134 LRLSYFKLNMIKVLILDE 151
LR LN + L+ DE
Sbjct: 140 LRQGALNLNQLNTLVFDE 157
>TIGR_CMR|SO_3388 [details] [associations]
symbol:SO_3388 "ATP-dependent RNA helicase, DEAD box
family" species:211586 "Shewanella oneidensis MR-1" [GO:0008150
"biological_process" evidence=ND] [GO:0008026 "ATP-dependent
helicase activity" evidence=ISS] InterPro:IPR000629
InterPro:IPR001650 InterPro:IPR011545 Pfam:PF00270 Pfam:PF00271
PROSITE:PS00039 PROSITE:PS51194 SMART:SM00490 GO:GO:0005524
GO:GO:0003676 EMBL:AE014299 GenomeReviews:AE014299_GR
InterPro:IPR014001 SMART:SM00487 PROSITE:PS51192 GO:GO:0008026
InterPro:IPR014014 PROSITE:PS51195 HSSP:P10081 HOGENOM:HOG000268807
RefSeq:NP_718942.1 ProteinModelPortal:Q8EBV7 GeneID:1171066
KEGG:son:SO_3388 PATRIC:23526456 OMA:SHLVRSK ProtClustDB:CLSK907144
Uniprot:Q8EBV7
Length = 409
Score = 90 (36.7 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 19/56 (33%), Positives = 32/56 (57%)
Query: 433 SRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488
S+ + ++++EF++GLV V+VAT + GLD+ VI F+ +I GR
Sbjct: 280 SQGAREKVLQEFKQGLVQVLVATDVAARGLDIAELQYVINFELPFIAEDYIHRIGR 335
Score = 80 (33.2 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 37/138 (26%), Positives = 62/138 (44%)
Query: 26 QLEALENAL-KQNTIVFLETGSGKTL-IAIMLLRSYAYLLRKPSPXXXXXXXXXXXXXXX 83
Q+EA+ L KQ+ + +TG+GKT A+ +L+ LL +
Sbjct: 28 QVEAIPAILTKQDVMAGAQTGTGKTAAFALPILQ----LLMADNQSDHAAKAIRALVLVP 83
Query: 84 XXE-AIKMH---------TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDG 133
E A+++ TD++VG +G + ++ A + + +VL+ TP LLD
Sbjct: 84 TRELALQVQQSFVKYAKGTDIRVGIAYGGVSIEAQQ-AVFNAGI---DVLIATPGRLLDH 139
Query: 134 LRLSYFKLNMIKVLILDE 151
LR LN + L+ DE
Sbjct: 140 LRQGALNLNQLNTLVFDE 157
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.321 0.136 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 1396 1367 0.00088 124 3 11 22 0.37 34
39 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 131
No. of states in DFA: 631 (67 KB)
Total size of DFA: 607 KB (2270 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 113.54u 0.09s 113.63t Elapsed: 00:00:05
Total cpu time: 113.59u 0.10s 113.69t Elapsed: 00:00:05
Start: Tue May 21 23:23:28 2013 End: Tue May 21 23:23:33 2013
WARNINGS ISSUED: 1