Query 000607
Match_columns 1396
No_of_seqs 576 out of 4413
Neff 8.8
Searched_HMMs 46136
Date Mon Apr 1 20:45:49 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000607.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000607hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0701 dsRNA-specific nucleas 100.0 7.7E-70 1.7E-74 691.9 16.8 1180 85-1394 4-1601(1606)
2 COG1111 MPH1 ERCC4-like helica 100.0 1.7E-56 3.7E-61 501.7 41.0 462 19-526 13-503 (542)
3 KOG0354 DEAD-box like helicase 100.0 2.2E-50 4.7E-55 480.4 41.5 435 19-501 60-527 (746)
4 KOG1817 Ribonuclease [RNA proc 100.0 3.3E-49 7.2E-54 427.8 25.1 404 933-1394 17-506 (533)
5 COG0571 Rnc dsRNA-specific rib 100.0 3.5E-42 7.5E-47 367.3 20.3 222 1149-1394 6-234 (235)
6 PRK12371 ribonuclease III; Rev 100.0 8.4E-42 1.8E-46 371.1 21.1 218 1149-1391 10-231 (235)
7 PRK12372 ribonuclease III; Rev 100.0 7.8E-42 1.7E-46 382.1 20.3 218 1151-1395 3-226 (413)
8 PRK14718 ribonuclease III; Pro 100.0 7.7E-42 1.7E-46 382.3 19.8 217 1151-1394 3-225 (467)
9 KOG0330 ATP-dependent RNA heli 100.0 9E-41 1.9E-45 360.6 24.1 332 20-517 82-421 (476)
10 PRK13766 Hef nuclease; Provisi 100.0 2.3E-38 4.9E-43 413.6 50.2 452 19-527 13-502 (773)
11 KOG0331 ATP-dependent RNA heli 100.0 2.5E-39 5.4E-44 375.9 29.4 342 19-517 111-462 (519)
12 PTZ00110 helicase; Provisional 100.0 3.2E-38 7E-43 390.2 35.0 337 19-515 150-496 (545)
13 PLN00206 DEAD-box ATP-dependen 100.0 5.1E-38 1.1E-42 387.7 34.7 334 19-513 141-485 (518)
14 PRK04837 ATP-dependent RNA hel 100.0 2.2E-38 4.7E-43 384.6 30.2 336 17-514 26-373 (423)
15 PRK10590 ATP-dependent RNA hel 100.0 1E-37 2.2E-42 380.9 33.2 331 18-512 20-361 (456)
16 PRK11776 ATP-dependent RNA hel 100.0 3.4E-37 7.3E-42 378.4 34.2 320 19-504 24-350 (460)
17 PRK11192 ATP-dependent RNA hel 100.0 3.7E-37 8.1E-42 375.8 33.5 335 17-512 19-361 (434)
18 PRK00102 rnc ribonuclease III; 100.0 8.7E-38 1.9E-42 346.2 21.2 218 1150-1391 4-228 (229)
19 PRK01297 ATP-dependent RNA hel 100.0 3.1E-36 6.8E-41 370.6 35.5 324 20-504 108-443 (475)
20 PRK04537 ATP-dependent RNA hel 100.0 1.3E-36 2.7E-41 377.0 31.7 324 18-503 28-364 (572)
21 PRK11634 ATP-dependent RNA hel 100.0 3.8E-36 8.2E-41 374.2 34.6 321 18-503 25-352 (629)
22 PTZ00424 helicase 45; Provisio 100.0 6.1E-36 1.3E-40 362.9 31.6 329 19-511 48-382 (401)
23 KOG0340 ATP-dependent RNA heli 100.0 4.2E-36 9.1E-41 320.8 22.3 334 19-513 27-371 (442)
24 TIGR02191 RNaseIII ribonucleas 100.0 1.6E-36 3.5E-41 334.3 19.4 212 1154-1389 1-220 (220)
25 COG0513 SrmB Superfamily II DN 100.0 3.7E-35 8E-40 359.3 33.0 335 18-514 48-392 (513)
26 KOG0338 ATP-dependent RNA heli 100.0 7.5E-36 1.6E-40 331.3 22.4 331 18-508 200-538 (691)
27 KOG0333 U5 snRNP-like RNA heli 100.0 2.4E-35 5.2E-40 329.0 26.3 354 20-515 266-636 (673)
28 TIGR00603 rad25 DNA repair hel 100.0 2.7E-34 5.9E-39 351.7 33.9 331 19-506 253-610 (732)
29 KOG0335 ATP-dependent RNA heli 100.0 5.1E-34 1.1E-38 325.5 23.9 344 19-516 94-457 (482)
30 KOG0328 Predicted ATP-dependen 100.0 8.8E-34 1.9E-38 293.2 23.4 334 19-517 47-387 (400)
31 TIGR00614 recQ_fam ATP-depende 100.0 1.8E-33 4E-38 344.4 29.9 321 19-506 9-336 (470)
32 KOG0326 ATP-dependent RNA heli 100.0 2.8E-34 6.2E-39 301.5 15.1 325 21-511 107-437 (459)
33 TIGR03817 DECH_helic helicase/ 100.0 1.2E-32 2.6E-37 349.7 32.7 337 19-501 34-384 (742)
34 KOG0343 RNA Helicase [RNA proc 100.0 9.1E-33 2E-37 309.5 25.8 337 6-503 76-422 (758)
35 PLN03137 ATP-dependent DNA hel 100.0 1.5E-32 3.2E-37 342.6 29.3 315 21-502 460-786 (1195)
36 PRK11057 ATP-dependent DNA hel 100.0 2.1E-32 4.6E-37 343.3 30.4 313 20-504 24-344 (607)
37 PHA02558 uvsW UvsW helicase; P 100.0 7.9E-32 1.7E-36 331.4 34.7 322 20-493 113-440 (501)
38 KOG0345 ATP-dependent RNA heli 100.0 2.6E-32 5.6E-37 301.9 25.9 326 18-502 25-363 (567)
39 KOG0336 ATP-dependent RNA heli 100.0 2.2E-33 4.7E-38 303.3 17.0 343 18-522 239-592 (629)
40 PRK04914 ATP-dependent helicas 100.0 3E-32 6.6E-37 345.7 29.4 446 18-516 149-616 (956)
41 PRK02362 ski2-like helicase; P 100.0 9.1E-32 2E-36 346.5 34.4 324 19-501 21-395 (737)
42 PRK13767 ATP-dependent helicas 100.0 8E-32 1.7E-36 349.3 33.2 329 20-493 31-385 (876)
43 COG1061 SSL2 DNA or RNA helica 100.0 1.6E-31 3.4E-36 321.8 32.8 336 16-491 31-375 (442)
44 KOG0342 ATP-dependent RNA heli 100.0 4E-32 8.6E-37 303.1 22.3 331 14-503 97-437 (543)
45 TIGR01389 recQ ATP-dependent D 100.0 1.3E-31 2.8E-36 338.0 30.0 313 20-504 12-332 (591)
46 KOG0350 DEAD-box ATP-dependent 100.0 8.7E-32 1.9E-36 299.3 20.7 367 16-508 154-545 (620)
47 PRK10917 ATP-dependent DNA hel 100.0 4.8E-31 1E-35 334.4 28.4 322 18-515 258-602 (681)
48 KOG0347 RNA helicase [RNA proc 100.0 1.4E-31 3E-36 300.2 19.0 355 18-511 200-578 (731)
49 TIGR00580 mfd transcription-re 100.0 7.5E-31 1.6E-35 335.2 28.3 306 19-503 449-770 (926)
50 PRK01172 ski2-like helicase; P 100.0 4E-30 8.6E-35 329.5 32.0 318 20-501 21-376 (674)
51 TIGR00643 recG ATP-dependent D 100.0 3.4E-30 7.4E-35 324.8 29.6 310 18-500 232-563 (630)
52 KOG0341 DEAD-box protein abstr 100.0 3.2E-31 6.9E-36 284.6 16.6 331 18-515 189-541 (610)
53 KOG0348 ATP-dependent RNA heli 100.0 4.2E-30 9.1E-35 287.5 25.8 361 21-509 159-560 (708)
54 PRK00254 ski2-like helicase; P 100.0 1.4E-29 3E-34 325.6 33.3 325 18-503 20-388 (720)
55 KOG0339 ATP-dependent RNA heli 100.0 1.3E-29 2.7E-34 281.4 24.8 327 20-510 244-582 (731)
56 KOG0346 RNA helicase [RNA proc 100.0 8.5E-30 1.8E-34 279.2 22.8 335 21-518 41-425 (569)
57 PRK10689 transcription-repair 100.0 4.1E-29 8.8E-34 326.1 30.1 310 14-501 593-917 (1147)
58 KOG4284 DEAD box protein [Tran 100.0 2E-29 4.4E-34 286.5 22.2 329 18-503 44-379 (980)
59 PLN03142 Probable chromatin-re 100.0 1.7E-27 3.8E-32 303.1 36.8 400 21-504 169-600 (1033)
60 COG1204 Superfamily II helicas 100.0 1E-27 2.2E-32 300.3 30.3 329 21-500 31-405 (766)
61 KOG0332 ATP-dependent RNA heli 100.0 3.6E-28 7.8E-33 261.6 21.4 330 20-515 111-456 (477)
62 TIGR02621 cas3_GSU0051 CRISPR- 100.0 1.7E-27 3.7E-32 294.7 30.2 303 20-494 14-379 (844)
63 KOG0344 ATP-dependent RNA heli 100.0 8.5E-28 1.8E-32 275.4 25.3 344 15-516 152-508 (593)
64 PRK09751 putative ATP-dependen 100.0 1.7E-27 3.7E-32 311.1 31.0 314 40-493 1-372 (1490)
65 KOG0334 RNA helicase [RNA proc 100.0 2.1E-28 4.6E-33 297.8 20.1 330 21-515 387-732 (997)
66 PRK11448 hsdR type I restricti 100.0 2.9E-27 6.2E-32 307.6 31.6 356 20-501 412-813 (1123)
67 PHA02653 RNA helicase NPH-II; 100.0 4.8E-27 1E-31 290.5 24.4 318 23-504 166-515 (675)
68 COG1201 Lhr Lhr-like helicases 99.9 1.8E-26 3.9E-31 284.0 28.6 324 19-501 20-360 (814)
69 KOG0385 Chromatin remodeling c 99.9 1.3E-25 2.8E-30 261.5 31.5 410 20-503 166-599 (971)
70 TIGR01587 cas3_core CRISPR-ass 99.9 1.9E-26 4.2E-31 275.0 25.7 296 37-493 1-320 (358)
71 KOG0327 Translation initiation 99.9 1.4E-26 3E-31 253.0 18.8 333 17-515 44-382 (397)
72 TIGR03158 cas3_cyano CRISPR-as 99.9 7E-26 1.5E-30 266.6 26.3 319 25-490 1-357 (357)
73 COG0514 RecQ Superfamily II DN 99.9 9.5E-26 2.1E-30 268.0 27.1 316 22-508 18-342 (590)
74 TIGR01970 DEAH_box_HrpB ATP-de 99.9 4.8E-26 1E-30 288.5 25.9 304 25-502 6-335 (819)
75 COG1202 Superfamily II helicas 99.9 9.3E-26 2E-30 254.5 23.7 318 19-503 214-553 (830)
76 COG1200 RecG RecG-like helicas 99.9 9E-26 2E-30 266.3 24.0 317 13-503 254-591 (677)
77 PRK11664 ATP-dependent RNA hel 99.9 1.3E-25 2.9E-30 285.4 26.6 305 24-502 8-338 (812)
78 KOG0387 Transcription-coupled 99.9 1E-24 2.2E-29 255.8 31.3 414 21-506 205-661 (923)
79 KOG0337 ATP-dependent RNA heli 99.9 5.9E-27 1.3E-31 256.0 11.4 329 20-512 42-377 (529)
80 KOG0392 SNF2 family DNA-depend 99.9 4.9E-24 1.1E-28 258.5 35.2 436 20-516 974-1465(1549)
81 PRK09401 reverse gyrase; Revie 99.9 5.3E-25 1.2E-29 288.4 27.1 303 19-491 78-430 (1176)
82 KOG0701 dsRNA-specific nucleas 99.9 2.4E-27 5.2E-32 304.3 2.5 606 25-643 248-923 (1606)
83 TIGR03714 secA2 accessory Sec 99.9 1.4E-23 3.1E-28 257.5 34.5 412 21-503 68-537 (762)
84 PRK09200 preprotein translocas 99.9 2.6E-23 5.6E-28 258.1 36.2 409 20-503 77-541 (790)
85 PRK05580 primosome assembly pr 99.9 1.1E-23 2.4E-28 266.0 32.9 154 19-191 142-305 (679)
86 PRK12371 ribonuclease III; Rev 99.9 1.7E-25 3.6E-30 243.7 12.0 134 960-1126 13-148 (235)
87 COG0571 Rnc dsRNA-specific rib 99.9 2.7E-25 5.8E-30 237.8 11.6 134 960-1126 9-146 (235)
88 TIGR00963 secA preprotein tran 99.9 1.6E-23 3.4E-28 255.3 28.1 121 369-503 388-517 (745)
89 PRK12898 secA preprotein trans 99.9 4.5E-23 9.7E-28 250.6 31.5 407 19-503 101-586 (656)
90 PRK14718 ribonuclease III; Pro 99.9 3.3E-25 7.2E-30 249.2 11.8 133 960-1126 4-136 (467)
91 KOG0952 DNA/RNA helicase MER3/ 99.9 1.9E-23 4.1E-28 251.5 27.4 338 22-503 111-491 (1230)
92 PRK14701 reverse gyrase; Provi 99.9 3.9E-24 8.5E-29 285.4 23.7 130 20-157 78-214 (1638)
93 PRK12372 ribonuclease III; Rev 99.9 5.5E-25 1.2E-29 247.2 11.8 133 960-1126 4-136 (413)
94 KOG0384 Chromodomain-helicase 99.9 3.9E-24 8.5E-29 261.0 18.6 404 20-504 369-812 (1373)
95 TIGR00595 priA primosomal prot 99.9 4.7E-23 1E-27 251.1 27.6 134 39-191 1-140 (505)
96 PF14622 Ribonucleas_3_3: Ribo 99.9 2.6E-25 5.7E-30 220.6 5.0 126 1164-1314 1-126 (128)
97 COG4096 HsdR Type I site-speci 99.9 6.8E-23 1.5E-27 244.3 23.4 346 15-493 159-526 (875)
98 PF03368 Dicer_dimer: Dicer di 99.9 2.4E-24 5.3E-29 197.2 8.3 84 560-643 1-88 (90)
99 KOG0389 SNF2 family DNA-depend 99.9 2.2E-22 4.8E-27 235.8 25.6 427 18-504 396-889 (941)
100 PRK11131 ATP-dependent RNA hel 99.9 2.5E-22 5.5E-27 258.2 27.3 108 386-503 285-411 (1294)
101 COG1197 Mfd Transcription-repa 99.9 4.1E-22 8.9E-27 248.1 27.3 316 9-503 582-913 (1139)
102 TIGR01054 rgy reverse gyrase. 99.9 2.4E-22 5.2E-27 264.0 24.6 131 18-157 75-213 (1171)
103 COG1205 Distinct helicase fami 99.9 5.1E-22 1.1E-26 252.9 26.6 334 19-501 68-419 (851)
104 PRK09694 helicase Cas3; Provis 99.9 1.1E-21 2.4E-26 248.5 27.6 337 20-493 285-663 (878)
105 TIGR00348 hsdR type I site-spe 99.9 7.4E-21 1.6E-25 240.4 35.0 375 19-501 236-646 (667)
106 KOG0390 DNA repair protein, SN 99.9 5.5E-21 1.2E-25 232.3 32.0 406 19-506 236-710 (776)
107 TIGR01967 DEAH_box_HrpA ATP-de 99.9 8.4E-22 1.8E-26 254.7 25.8 314 23-503 69-404 (1283)
108 KOG0329 ATP-dependent RNA heli 99.9 2.6E-22 5.6E-27 205.3 16.2 161 21-192 64-229 (387)
109 smart00535 RIBOc Ribonuclease 99.9 1E-22 2.2E-27 204.6 9.6 127 1166-1317 1-127 (129)
110 cd00593 RIBOc RIBOc. Ribonucle 99.9 1.1E-22 2.5E-27 205.6 8.9 130 1166-1318 1-130 (133)
111 PF14622 Ribonucleas_3_3: Ribo 99.9 5.8E-23 1.3E-27 203.8 5.7 120 978-1126 2-123 (128)
112 PRK00102 rnc ribonuclease III; 99.9 6.3E-22 1.4E-26 219.4 11.2 134 960-1126 6-143 (229)
113 COG4098 comFA Superfamily II D 99.9 4.6E-19 1E-23 190.1 31.0 306 19-500 95-413 (441)
114 KOG0351 ATP-dependent DNA heli 99.9 5.5E-21 1.2E-25 240.8 17.1 312 22-503 265-592 (941)
115 KOG0951 RNA helicase BRR2, DEA 99.9 1.6E-20 3.4E-25 228.6 20.2 328 22-493 310-688 (1674)
116 smart00535 RIBOc Ribonuclease 99.8 1.9E-21 4.2E-26 195.2 10.1 118 980-1125 2-120 (129)
117 TIGR02191 RNaseIII ribonucleas 99.8 1.8E-21 3.9E-26 214.7 10.6 132 962-1126 1-137 (220)
118 cd00593 RIBOc RIBOc. Ribonucle 99.8 1.9E-21 4.1E-26 196.7 9.6 119 980-1126 2-123 (133)
119 KOG1123 RNA polymerase II tran 99.8 2.7E-20 5.8E-25 207.1 16.6 330 17-504 298-654 (776)
120 PF00636 Ribonuclease_3: Ribon 99.8 1.7E-21 3.6E-26 190.9 3.6 113 997-1115 1-114 (114)
121 KOG0352 ATP-dependent DNA heli 99.8 5.4E-19 1.2E-23 193.5 22.2 329 22-506 21-365 (641)
122 KOG1000 Chromatin remodeling p 99.8 4.8E-18 1E-22 189.6 29.4 380 21-505 198-605 (689)
123 PF00636 Ribonuclease_3: Ribon 99.8 6.1E-21 1.3E-25 186.9 4.9 112 1187-1298 1-114 (114)
124 KOG1002 Nucleotide excision re 99.8 2.7E-17 5.9E-22 183.0 33.5 143 368-523 618-767 (791)
125 PRK13104 secA preprotein trans 99.8 1.1E-17 2.4E-22 207.1 33.3 120 368-501 426-585 (896)
126 PRK12906 secA preprotein trans 99.8 5.2E-18 1.1E-22 209.3 29.9 122 368-503 422-553 (796)
127 KOG1817 Ribonuclease [RNA proc 99.8 5.2E-20 1.1E-24 201.5 9.9 122 979-1129 290-415 (533)
128 COG4581 Superfamily II RNA hel 99.8 1E-18 2.3E-23 218.3 21.9 153 19-193 117-273 (1041)
129 COG4889 Predicted helicase [Ge 99.8 3.1E-19 6.7E-24 209.5 13.4 175 10-192 150-352 (1518)
130 KOG0388 SNF2 family DNA-depend 99.8 2.7E-17 5.9E-22 189.6 28.8 443 20-505 566-1156(1185)
131 PRK12904 preprotein translocas 99.8 6.4E-17 1.4E-21 200.5 34.5 404 20-501 80-571 (830)
132 KOG0349 Putative DEAD-box RNA 99.8 2.8E-18 6E-23 187.7 15.7 311 67-503 285-615 (725)
133 KOG0947 Cytoplasmic exosomal R 99.8 9.3E-18 2E-22 200.3 20.0 152 20-194 296-448 (1248)
134 KOG0386 Chromatin remodeling c 99.8 1.2E-17 2.7E-22 201.0 21.1 414 21-494 394-825 (1157)
135 TIGR00631 uvrb excinuclease AB 99.8 4.5E-16 9.7E-21 194.3 35.3 132 369-512 425-562 (655)
136 cd00268 DEADc DEAD-box helicas 99.8 8.3E-18 1.8E-22 183.8 17.6 163 19-192 19-186 (203)
137 KOG0948 Nuclear exosomal RNA h 99.8 1E-17 2.3E-22 195.0 18.7 366 20-502 128-538 (1041)
138 KOG0950 DNA polymerase theta/e 99.8 2.9E-17 6.4E-22 198.3 23.2 347 21-504 223-612 (1008)
139 PF00270 DEAD: DEAD/DEAH box h 99.8 6.1E-18 1.3E-22 179.1 15.1 158 23-191 1-163 (169)
140 KOG4439 RNA polymerase II tran 99.8 3.1E-16 6.8E-21 182.2 29.5 463 19-522 323-875 (901)
141 KOG0353 ATP-dependent DNA heli 99.8 4.8E-17 1E-21 175.1 20.8 294 22-484 95-403 (695)
142 KOG0391 SNF2 family DNA-depend 99.7 6.1E-16 1.3E-20 186.4 29.9 125 367-503 1257-1387(1958)
143 cd02844 PAZ_CAF_like PAZ domai 99.7 8.2E-18 1.8E-22 165.1 9.0 115 819-936 16-135 (135)
144 KOG0949 Predicted helicase, DE 99.7 3.9E-16 8.4E-21 186.8 24.9 154 20-193 510-674 (1330)
145 COG1643 HrpA HrpA-like helicas 99.7 1.8E-16 3.9E-21 197.9 22.7 312 23-502 52-386 (845)
146 PRK13107 preprotein translocas 99.7 2.3E-15 5.1E-20 185.9 31.1 120 368-501 431-589 (908)
147 KOG0920 ATP-dependent RNA heli 99.7 4.2E-16 9.1E-21 193.3 23.7 423 22-592 174-641 (924)
148 PF04851 ResIII: Type III rest 99.7 6.6E-17 1.4E-21 173.7 14.7 153 20-191 2-183 (184)
149 PRK12899 secA preprotein trans 99.7 3.7E-14 8.1E-19 175.5 35.2 125 22-157 93-229 (970)
150 PRK05298 excinuclease ABC subu 99.7 4.7E-14 1E-18 178.1 36.5 122 370-503 430-557 (652)
151 KOG0922 DEAH-box RNA helicase 99.7 6.8E-15 1.5E-19 172.8 25.0 314 23-503 53-390 (674)
152 COG0553 HepA Superfamily II DN 99.7 4.2E-14 9.2E-19 190.1 36.2 445 20-524 337-841 (866)
153 COG1203 CRISPR-associated heli 99.7 2.8E-15 6.1E-20 191.9 23.3 95 385-493 438-536 (733)
154 COG1198 PriA Primosomal protei 99.7 2.9E-14 6.2E-19 175.8 29.8 124 20-156 197-326 (730)
155 KOG3769 Ribonuclease III domai 99.6 2.2E-15 4.7E-20 158.8 14.7 225 1144-1394 58-306 (333)
156 TIGR00596 rad1 DNA repair prot 99.6 1E-13 2.2E-18 174.9 28.7 375 119-529 7-539 (814)
157 COG0556 UvrB Helicase subunit 99.6 4.6E-13 1E-17 152.5 27.2 119 371-501 431-555 (663)
158 cd02843 PAZ_dicer_like PAZ dom 99.6 1.9E-15 4.1E-20 141.5 6.6 109 790-909 6-118 (122)
159 smart00487 DEXDc DEAD-like hel 99.6 2.8E-14 6E-19 155.1 16.7 160 19-192 6-172 (201)
160 PRK12900 secA preprotein trans 99.6 8.3E-13 1.8E-17 164.1 29.9 122 369-504 581-712 (1025)
161 KOG0924 mRNA splicing factor A 99.6 1.8E-13 3.9E-18 158.4 21.1 313 24-503 359-697 (1042)
162 cd00046 DEXDc DEAD-like helica 99.5 4.7E-14 1E-18 144.0 14.0 142 36-190 1-144 (144)
163 PF00271 Helicase_C: Helicase 99.5 1.8E-14 3.9E-19 130.6 8.4 73 415-493 6-78 (78)
164 KOG0923 mRNA splicing factor A 99.5 3.3E-13 7E-18 156.3 20.4 313 23-502 267-605 (902)
165 TIGR01407 dinG_rel DnaQ family 99.5 1.1E-12 2.3E-17 172.1 27.7 106 386-501 673-812 (850)
166 COG1110 Reverse gyrase [DNA re 99.5 5.6E-13 1.2E-17 162.4 21.0 131 19-158 80-218 (1187)
167 KOG0926 DEAH-box RNA helicase 99.5 2.5E-13 5.5E-18 159.8 15.6 149 29-194 264-428 (1172)
168 cd00079 HELICc Helicase superf 99.5 2.4E-13 5.3E-18 137.0 12.9 114 369-494 11-124 (131)
169 KOG1015 Transcription regulato 99.5 7.5E-13 1.6E-17 157.6 18.3 132 366-504 1122-1278(1567)
170 PRK12326 preprotein translocas 99.4 2E-10 4.3E-15 139.4 31.5 126 20-157 77-212 (764)
171 PF00176 SNF2_N: SNF2 family N 99.4 1.4E-12 3.1E-17 151.9 12.4 156 25-194 1-176 (299)
172 PRK13103 secA preprotein trans 99.4 4E-10 8.8E-15 140.3 31.3 124 22-157 83-216 (913)
173 PRK07246 bifunctional ATP-depe 99.3 3E-10 6.5E-15 146.8 27.0 131 19-156 243-449 (820)
174 smart00490 HELICc helicase sup 99.3 7.6E-12 1.6E-16 114.5 9.0 80 403-493 3-82 (82)
175 cd02845 PAZ_piwi_like PAZ doma 99.3 7.8E-12 1.7E-16 120.7 7.9 88 832-930 26-113 (117)
176 PRK08074 bifunctional ATP-depe 99.3 8.1E-10 1.8E-14 145.6 28.4 95 373-476 738-834 (928)
177 PRK12903 secA preprotein trans 99.2 2.2E-08 4.7E-13 123.6 31.9 118 368-501 408-537 (925)
178 KOG4150 Predicted ATP-dependen 99.1 3.8E-10 8.3E-15 128.4 14.3 115 386-503 524-640 (1034)
179 KOG1001 Helicase-like transcri 99.1 5.8E-10 1.3E-14 138.3 17.0 117 368-495 520-638 (674)
180 PF07652 Flavi_DEAD: Flaviviru 99.1 2.7E-10 5.9E-15 111.2 8.2 133 38-194 7-140 (148)
181 PRK14873 primosome assembly pr 99.1 2E-08 4.3E-13 125.8 25.7 135 38-191 163-304 (665)
182 KOG0925 mRNA splicing factor A 99.1 6.1E-09 1.3E-13 117.5 18.6 145 26-191 51-202 (699)
183 TIGR02562 cas3_yersinia CRISPR 99.0 2.7E-08 5.8E-13 125.2 25.6 162 22-192 409-636 (1110)
184 COG0610 Type I site-specific r 99.0 2.9E-08 6.3E-13 130.0 26.4 158 20-196 247-419 (962)
185 PF02170 PAZ: PAZ domain; Int 99.0 1.5E-10 3.2E-15 116.8 3.8 106 831-955 26-133 (135)
186 KOG0951 RNA helicase BRR2, DEA 99.0 5.1E-09 1.1E-13 129.9 17.7 142 24-192 1146-1301(1674)
187 PRK11747 dinG ATP-dependent DN 99.0 1.4E-07 3.1E-12 120.6 31.1 90 372-476 520-615 (697)
188 CHL00122 secA preprotein trans 99.0 2.5E-07 5.4E-12 115.4 30.0 125 21-157 76-210 (870)
189 KOG0953 Mitochondrial RNA heli 98.9 9.2E-09 2E-13 118.3 14.8 97 386-495 357-464 (700)
190 COG1199 DinG Rad3-related DNA 98.9 3.2E-07 6.9E-12 118.6 30.1 116 373-501 465-615 (654)
191 KOG1016 Predicted DNA helicase 98.9 1.2E-07 2.6E-12 112.0 22.0 103 386-494 718-836 (1387)
192 PRK12902 secA preprotein trans 98.9 7.7E-07 1.7E-11 110.8 29.8 113 34-157 97-219 (939)
193 TIGR03117 cas_csf4 CRISPR-asso 98.8 1.6E-08 3.4E-13 124.9 11.2 129 26-157 2-220 (636)
194 PHA02701 ORF020 dsRNA-binding 98.8 2.1E-08 4.5E-13 101.2 8.8 68 1322-1391 107-177 (183)
195 smart00489 DEXDc3 DEAD-like he 98.7 9.5E-08 2.1E-12 109.2 12.9 71 21-91 8-84 (289)
196 smart00488 DEXDc2 DEAD-like he 98.7 9.5E-08 2.1E-12 109.2 12.9 71 21-91 8-84 (289)
197 cd00048 DSRM Double-stranded R 98.7 5.8E-08 1.3E-12 85.2 8.8 65 1324-1389 1-68 (68)
198 KOG1042 Germ-line stem cell di 98.7 1.5E-08 3.2E-13 117.8 5.9 95 832-940 282-376 (845)
199 PF00035 dsrm: Double-stranded 98.7 5.8E-08 1.3E-12 84.9 8.2 64 1325-1389 1-67 (67)
200 smart00358 DSRM Double-strande 98.7 6.6E-08 1.4E-12 84.6 8.0 64 1325-1390 1-67 (67)
201 PHA03103 double-strand RNA-bin 98.7 8.2E-08 1.8E-12 97.9 9.1 85 1304-1391 86-177 (183)
202 cd02825 PAZ PAZ domain, named 98.5 1.9E-07 4.2E-12 90.9 6.7 83 831-930 30-114 (115)
203 PRK12901 secA preprotein trans 98.5 5.6E-05 1.2E-09 95.6 28.6 111 368-493 610-729 (1112)
204 PF02399 Herpes_ori_bp: Origin 98.4 1.4E-05 3E-10 98.9 22.3 139 38-192 52-192 (824)
205 PRK15483 type III restriction- 98.2 6.2E-06 1.4E-10 104.9 12.5 45 448-492 501-545 (986)
206 PF13086 AAA_11: AAA domain; P 98.1 8.8E-06 1.9E-10 90.9 9.1 69 22-90 2-75 (236)
207 KOG0383 Predicted helicase [Ge 98.0 4E-06 8.6E-11 103.1 5.1 160 21-194 295-478 (696)
208 KOG3732 Staufen and related do 98.0 1.2E-05 2.7E-10 88.5 7.8 72 1321-1394 140-214 (339)
209 TIGR00604 rad3 DNA repair heli 97.9 6E-05 1.3E-09 97.7 12.3 99 372-477 507-615 (705)
210 PF14709 DND1_DSRM: double str 97.9 2.6E-05 5.6E-10 69.9 6.2 68 1323-1390 1-80 (80)
211 PF07517 SecA_DEAD: SecA DEAD- 97.8 0.00012 2.6E-09 81.4 11.7 126 19-156 75-210 (266)
212 KOG0298 DEAD box-containing he 97.8 3.5E-05 7.6E-10 97.7 7.2 141 37-193 376-553 (1394)
213 PF13872 AAA_34: P-loop contai 97.8 0.0002 4.3E-09 79.7 12.0 153 22-192 38-222 (303)
214 PF06862 DUF1253: Protein of u 97.7 0.008 1.7E-07 71.4 24.6 116 385-511 298-423 (442)
215 KOG1802 RNA helicase nonsense 97.7 0.00017 3.7E-09 85.4 10.3 135 15-158 404-583 (935)
216 cd02846 PAZ_argonaute_like PAZ 97.6 9.2E-05 2E-09 72.3 6.3 79 833-930 31-113 (114)
217 KOG3769 Ribonuclease III domai 97.6 0.00028 6.1E-09 76.0 10.2 163 976-1171 77-258 (333)
218 COG0653 SecA Preprotein transl 97.6 0.011 2.3E-07 74.6 24.2 111 368-493 411-533 (822)
219 PF09848 DUF2075: Uncharacteri 97.5 0.00017 3.7E-09 85.6 7.8 95 37-157 3-97 (352)
220 PF13245 AAA_19: Part of AAA d 97.5 0.00029 6.3E-09 62.8 6.9 60 28-88 1-62 (76)
221 KOG3732 Staufen and related do 97.5 0.00028 6E-09 78.1 7.9 69 1323-1394 38-109 (339)
222 KOG0921 Dosage compensation co 97.4 0.0015 3.1E-08 80.3 14.2 152 25-192 382-537 (1282)
223 TIGR00376 DNA helicase, putati 97.4 0.00069 1.5E-08 86.0 11.1 67 20-91 156-224 (637)
224 KOG1803 DNA helicase [Replicat 97.4 0.00039 8.5E-09 82.6 7.9 64 21-89 185-250 (649)
225 KOG0952 DNA/RNA helicase MER3/ 97.3 0.00016 3.6E-09 90.1 4.3 112 37-158 945-1061(1230)
226 PF13604 AAA_30: AAA domain; P 97.3 0.00065 1.4E-08 73.3 8.1 64 22-94 2-68 (196)
227 PF02562 PhoH: PhoH-like prote 97.3 0.00069 1.5E-08 72.4 7.8 55 23-80 6-61 (205)
228 PF13307 Helicase_C_2: Helicas 97.1 0.002 4.3E-08 67.6 9.7 81 386-477 8-92 (167)
229 PF12340 DUF3638: Protein of u 97.0 0.0022 4.8E-08 69.1 8.9 135 18-157 20-186 (229)
230 COG1939 Ribonuclease III famil 97.0 0.0018 3.9E-08 61.3 6.6 109 1187-1310 16-125 (132)
231 PLN03202 protein argonaute; Pr 96.8 0.0016 3.4E-08 85.8 6.3 80 832-930 293-382 (900)
232 TIGR01447 recD exodeoxyribonuc 96.8 0.0045 9.7E-08 77.6 10.0 119 24-157 148-273 (586)
233 KOG1131 RNA polymerase II tran 96.6 0.0053 1.2E-07 71.3 8.3 64 23-88 18-87 (755)
234 COG3421 Uncharacterized protei 96.6 0.0018 4E-08 76.4 4.4 112 41-156 3-125 (812)
235 COG1875 NYN ribonuclease and A 96.6 0.0087 1.9E-07 67.4 9.4 121 19-157 225-365 (436)
236 PF13401 AAA_22: AAA domain; P 96.6 0.0038 8.1E-08 62.6 6.2 56 37-92 6-62 (131)
237 PRK06526 transposase; Provisio 96.5 0.007 1.5E-07 67.8 8.3 33 37-74 100-132 (254)
238 COG3587 Restriction endonuclea 96.4 0.0099 2.2E-07 73.5 9.2 44 448-491 483-526 (985)
239 KOG1132 Helicase of the DEAD s 96.4 0.019 4.2E-07 71.5 11.4 42 13-54 13-59 (945)
240 PRK12723 flagellar biosynthesi 96.4 0.037 8E-07 65.6 13.4 121 37-191 176-298 (388)
241 PRK10875 recD exonuclease V su 96.4 0.0099 2.1E-07 74.7 9.1 65 23-88 154-219 (615)
242 KOG2340 Uncharacterized conser 96.3 0.43 9.4E-06 56.4 21.2 129 369-508 533-673 (698)
243 PRK10536 hypothetical protein; 96.3 0.0054 1.2E-07 67.4 5.7 55 23-80 61-116 (262)
244 PRK08181 transposase; Validate 96.0 0.062 1.3E-06 60.6 12.3 57 21-83 87-148 (269)
245 PRK04296 thymidine kinase; Pro 95.9 0.015 3.3E-07 62.4 6.9 34 38-76 5-38 (190)
246 TIGR01448 recD_rel helicase, p 95.9 0.032 7E-07 72.2 11.0 59 19-80 321-380 (720)
247 TIGR02768 TraA_Ti Ti-type conj 95.8 0.084 1.8E-06 68.7 14.2 101 20-157 351-453 (744)
248 PF00448 SRP54: SRP54-type pro 95.5 0.086 1.9E-06 56.7 10.7 122 38-192 4-127 (196)
249 PF00580 UvrD-helicase: UvrD/R 95.5 0.02 4.4E-07 67.0 6.3 122 23-153 2-125 (315)
250 PF14709 DND1_DSRM: double str 95.5 0.059 1.3E-06 48.5 7.5 63 559-626 2-79 (80)
251 PRK08084 DNA replication initi 95.4 0.1 2.3E-06 58.0 11.2 45 26-75 32-80 (235)
252 KOG1805 DNA replication helica 95.4 0.054 1.2E-06 68.2 9.4 125 21-157 669-810 (1100)
253 PRK12377 putative replication 95.3 0.13 2.9E-06 57.2 11.5 42 37-84 103-144 (248)
254 PRK07952 DNA replication prote 95.3 0.18 3.8E-06 56.1 12.2 46 24-74 79-133 (244)
255 COG1939 Ribonuclease III famil 95.2 0.033 7.3E-07 53.0 5.4 113 995-1126 14-126 (132)
256 COG1484 DnaC DNA replication p 95.1 0.074 1.6E-06 59.7 8.6 48 36-89 106-153 (254)
257 KOG2777 tRNA-specific adenosin 95.0 0.041 8.9E-07 66.0 6.8 68 1322-1393 89-156 (542)
258 PTZ00112 origin recognition co 95.0 0.22 4.8E-06 63.2 13.1 41 22-62 759-808 (1164)
259 smart00382 AAA ATPases associa 95.0 0.027 5.8E-07 56.7 4.6 39 36-79 3-41 (148)
260 PRK13889 conjugal transfer rel 94.9 0.2 4.3E-06 66.2 13.2 101 20-157 345-447 (988)
261 PRK08727 hypothetical protein; 94.9 0.15 3.3E-06 56.7 10.5 33 38-75 44-76 (233)
262 PRK06835 DNA replication prote 94.9 0.14 3.1E-06 59.5 10.6 58 21-84 160-226 (329)
263 cd00009 AAA The AAA+ (ATPases 94.9 0.11 2.3E-06 52.7 8.7 23 37-59 21-43 (151)
264 PF13871 Helicase_C_4: Helicas 94.8 0.061 1.3E-06 60.2 7.1 63 439-501 52-126 (278)
265 TIGR00604 rad3 DNA repair heli 94.8 0.2 4.3E-06 65.4 13.0 70 19-90 8-82 (705)
266 PRK06893 DNA replication initi 94.8 0.096 2.1E-06 58.1 8.6 23 38-60 42-64 (229)
267 cd00048 DSRM Double-stranded R 94.7 0.089 1.9E-06 45.6 6.6 61 559-626 1-68 (68)
268 smart00492 HELICc3 helicase su 94.6 0.09 1.9E-06 53.2 7.0 44 433-476 32-78 (141)
269 PRK14974 cell division protein 94.5 0.53 1.1E-05 54.9 14.0 120 38-191 143-265 (336)
270 PRK14722 flhF flagellar biosyn 94.4 0.43 9.4E-06 56.2 13.2 119 37-192 139-259 (374)
271 PF00035 dsrm: Double-stranded 94.2 0.16 3.5E-06 44.0 6.8 59 560-626 1-67 (67)
272 TIGR03015 pepcterm_ATPase puta 94.1 0.3 6.6E-06 55.7 11.1 37 21-57 23-65 (269)
273 TIGR02928 orc1/cdc6 family rep 94.1 0.47 1E-05 56.9 13.2 41 21-61 18-66 (365)
274 KOG4334 Uncharacterized conser 94.1 0.034 7.5E-07 63.9 3.0 64 1326-1390 378-442 (650)
275 PRK05703 flhF flagellar biosyn 94.0 0.43 9.3E-06 57.8 12.4 120 37-192 223-344 (424)
276 TIGR02881 spore_V_K stage V sp 93.7 0.33 7.1E-06 55.1 10.1 24 37-60 44-67 (261)
277 PRK13826 Dtr system oriT relax 93.6 0.68 1.5E-05 61.8 14.0 101 20-157 380-482 (1102)
278 PF00004 AAA: ATPase family as 93.6 0.15 3.3E-06 50.7 6.6 21 38-58 1-21 (132)
279 PRK11889 flhF flagellar biosyn 93.6 0.71 1.5E-05 54.2 12.4 90 37-159 243-336 (436)
280 smart00491 HELICc2 helicase su 93.4 0.17 3.6E-06 51.4 6.3 41 436-476 32-79 (142)
281 PRK05642 DNA replication initi 93.4 0.27 6E-06 54.7 8.6 34 37-75 47-80 (234)
282 smart00358 DSRM Double-strande 93.4 0.21 4.6E-06 43.1 6.2 58 561-626 2-66 (67)
283 COG2256 MGS1 ATPase related to 93.3 0.32 7E-06 56.2 9.0 21 37-57 50-70 (436)
284 KOG0989 Replication factor C, 93.3 0.13 2.7E-06 57.2 5.5 35 25-59 40-81 (346)
285 COG1474 CDC6 Cdc6-related prot 93.1 0.65 1.4E-05 55.0 11.6 42 20-61 19-68 (366)
286 TIGR03420 DnaA_homol_Hda DnaA 93.1 0.4 8.6E-06 53.1 9.4 23 37-59 40-62 (226)
287 PRK00411 cdc6 cell division co 93.0 0.82 1.8E-05 55.4 12.8 38 22-59 34-79 (394)
288 PRK00149 dnaA chromosomal repl 92.8 0.45 9.7E-06 58.7 10.2 44 38-85 151-194 (450)
289 PF05496 RuvB_N: Holliday junc 92.6 0.32 7E-06 52.4 7.3 23 37-59 52-74 (233)
290 PRK10919 ATP-dependent DNA hel 92.6 0.16 3.4E-06 65.7 6.0 69 22-92 3-71 (672)
291 PRK05707 DNA polymerase III su 92.4 0.67 1.5E-05 54.2 10.3 38 22-59 4-46 (328)
292 PRK13833 conjugal transfer pro 92.3 0.28 6.1E-06 56.8 7.0 56 22-80 129-186 (323)
293 PRK14956 DNA polymerase III su 92.1 0.62 1.3E-05 56.5 9.7 22 38-59 43-64 (484)
294 PF01695 IstB_IS21: IstB-like 92.1 0.19 4.2E-06 53.2 4.9 40 37-82 49-88 (178)
295 PRK14087 dnaA chromosomal repl 92.1 0.67 1.5E-05 56.8 10.2 47 38-88 144-190 (450)
296 KOG1513 Nuclear helicase MOP-3 91.9 0.14 3E-06 62.8 3.8 149 22-191 265-455 (1300)
297 PRK12727 flagellar biosynthesi 91.8 1.2 2.6E-05 54.4 11.5 117 37-191 352-470 (559)
298 PRK00771 signal recognition pa 91.7 1 2.3E-05 54.4 11.1 53 38-95 98-152 (437)
299 cd01120 RecA-like_NTPases RecA 91.7 0.81 1.8E-05 47.3 9.2 38 38-80 2-39 (165)
300 COG1419 FlhF Flagellar GTP-bin 91.6 2.2 4.7E-05 50.2 13.0 118 37-190 205-323 (407)
301 PRK14088 dnaA chromosomal repl 91.6 0.83 1.8E-05 55.9 10.4 37 37-76 132-168 (440)
302 PRK14949 DNA polymerase III su 91.6 0.52 1.1E-05 60.8 8.7 22 38-59 41-62 (944)
303 TIGR00362 DnaA chromosomal rep 91.6 0.77 1.7E-05 55.8 10.1 35 38-75 139-173 (405)
304 PF05970 PIF1: PIF1-like helic 91.4 0.34 7.4E-06 57.8 6.6 55 22-82 2-63 (364)
305 PF00308 Bac_DnaA: Bacterial d 91.3 1.5 3.3E-05 48.2 11.1 87 38-169 37-123 (219)
306 PRK12323 DNA polymerase III su 91.3 1.1 2.3E-05 56.1 10.7 22 38-59 41-62 (700)
307 PRK13894 conjugal transfer ATP 91.2 0.44 9.5E-06 55.4 6.9 55 23-80 134-190 (319)
308 PRK14964 DNA polymerase III su 91.0 1.4 3.1E-05 54.0 11.4 100 37-166 37-138 (491)
309 PF13177 DNA_pol3_delta2: DNA 91.0 1.2 2.7E-05 46.3 9.5 23 38-60 22-44 (162)
310 PRK14086 dnaA chromosomal repl 91.0 1 2.2E-05 56.3 10.1 46 37-86 315-361 (617)
311 PF05621 TniB: Bacterial TniB 90.9 0.95 2.1E-05 51.2 9.0 55 37-95 63-123 (302)
312 PRK12422 chromosomal replicati 90.8 0.82 1.8E-05 55.8 9.1 34 38-76 144-177 (445)
313 PRK08939 primosomal protein Dn 90.8 0.57 1.2E-05 54.2 7.4 24 37-60 158-181 (306)
314 TIGR01425 SRP54_euk signal rec 90.7 3.6 7.8E-05 49.5 14.1 55 38-97 103-159 (429)
315 PRK07003 DNA polymerase III su 90.7 1.2 2.5E-05 56.6 10.2 22 38-59 41-62 (830)
316 TIGR02688 conserved hypothetic 90.6 0.94 2E-05 53.6 8.8 30 141-170 258-289 (449)
317 PRK11054 helD DNA helicase IV; 90.5 0.43 9.3E-06 61.3 6.6 71 20-92 195-265 (684)
318 PRK07471 DNA polymerase III su 90.5 3.7 8.1E-05 48.8 14.0 23 38-60 44-66 (365)
319 PRK06645 DNA polymerase III su 90.4 1.1 2.5E-05 55.2 9.9 23 37-59 45-67 (507)
320 PRK14960 DNA polymerase III su 90.4 1.3 2.8E-05 55.5 10.3 36 24-59 21-61 (702)
321 TIGR02782 TrbB_P P-type conjug 90.4 0.52 1.1E-05 54.4 6.6 53 25-80 120-174 (299)
322 COG1219 ClpX ATP-dependent pro 90.3 0.22 4.7E-06 55.5 3.2 77 36-157 98-176 (408)
323 PRK12402 replication factor C 90.1 1.3 2.7E-05 52.5 9.9 38 22-59 19-60 (337)
324 TIGR03499 FlhF flagellar biosy 90.0 0.77 1.7E-05 52.6 7.6 24 37-60 196-219 (282)
325 PHA02533 17 large terminase pr 90.0 2.1 4.5E-05 53.5 11.8 120 20-157 58-183 (534)
326 TIGR01075 uvrD DNA helicase II 89.7 0.46 1E-05 62.2 6.2 71 21-93 4-74 (715)
327 PRK11773 uvrD DNA-dependent he 89.7 0.55 1.2E-05 61.5 6.9 71 21-93 9-79 (721)
328 PRK14958 DNA polymerase III su 89.7 2.4 5.3E-05 52.7 12.0 22 38-59 41-62 (509)
329 COG3973 Superfamily I DNA and 89.6 0.44 9.5E-06 57.5 5.2 49 37-85 228-277 (747)
330 PRK11331 5-methylcytosine-spec 89.6 0.95 2.1E-05 54.3 8.0 37 22-58 180-217 (459)
331 PTZ00293 thymidine kinase; Pro 89.5 1.1 2.4E-05 48.3 7.7 36 38-78 7-42 (211)
332 PRK08116 hypothetical protein; 89.5 1.9 4.2E-05 48.9 10.2 42 38-85 117-158 (268)
333 PLN03025 replication factor C 89.5 2.2 4.9E-05 49.9 11.1 23 37-59 36-58 (319)
334 TIGR00959 ffh signal recogniti 89.4 5.5 0.00012 48.2 14.3 57 38-98 102-160 (428)
335 PRK10867 signal recognition pa 89.2 3.2 7E-05 50.2 12.3 56 38-97 103-160 (433)
336 PRK14963 DNA polymerase III su 89.1 1.9 4.2E-05 53.4 10.6 22 38-59 39-60 (504)
337 PRK14962 DNA polymerase III su 88.8 2 4.3E-05 52.9 10.3 35 25-59 21-60 (472)
338 PRK13851 type IV secretion sys 88.8 0.55 1.2E-05 55.0 5.3 50 26-81 151-202 (344)
339 PRK10917 ATP-dependent DNA hel 88.8 1.1 2.5E-05 58.1 8.7 80 386-472 309-389 (681)
340 PRK13900 type IV secretion sys 88.6 0.78 1.7E-05 53.7 6.3 49 27-81 150-200 (332)
341 PRK14959 DNA polymerase III su 88.5 1.5 3.2E-05 55.1 9.0 33 27-59 25-62 (624)
342 PRK12724 flagellar biosynthesi 88.4 4.6 0.0001 48.2 12.5 119 38-192 226-346 (432)
343 PF06733 DEAD_2: DEAD_2; Inte 88.4 0.28 6.1E-06 51.9 2.3 41 117-157 117-159 (174)
344 PRK14955 DNA polymerase III su 88.4 1.8 3.9E-05 52.3 9.6 36 24-59 22-62 (397)
345 TIGR01074 rep ATP-dependent DN 88.4 0.78 1.7E-05 59.8 6.9 88 22-133 2-89 (664)
346 cd01122 GP4d_helicase GP4d_hel 88.4 2.8 6.1E-05 47.8 10.8 112 37-157 32-154 (271)
347 PRK07994 DNA polymerase III su 88.4 2.5 5.3E-05 53.7 10.8 32 28-59 26-62 (647)
348 PF03354 Terminase_1: Phage Te 88.3 1.9 4E-05 53.7 9.8 146 24-187 1-160 (477)
349 COG1702 PhoH Phosphate starvat 88.1 0.99 2.1E-05 51.5 6.4 124 22-170 129-265 (348)
350 PRK14951 DNA polymerase III su 88.1 1.7 3.6E-05 55.0 9.1 22 38-59 41-62 (618)
351 PRK06731 flhF flagellar biosyn 88.1 5.4 0.00012 45.2 12.3 118 37-191 77-197 (270)
352 PRK09112 DNA polymerase III su 88.0 3.1 6.7E-05 49.2 10.9 22 38-59 48-69 (351)
353 PRK14952 DNA polymerase III su 88.0 2.9 6.2E-05 52.7 11.1 22 38-59 38-59 (584)
354 TIGR02760 TraI_TIGR conjugativ 88.0 2.8 6.1E-05 60.5 12.3 113 20-157 428-543 (1960)
355 PRK14961 DNA polymerase III su 87.9 1.5 3.3E-05 52.3 8.4 22 38-59 41-62 (363)
356 PRK14723 flhF flagellar biosyn 87.9 3.5 7.7E-05 53.0 11.8 115 38-190 188-305 (767)
357 PRK05896 DNA polymerase III su 87.9 2.5 5.5E-05 52.8 10.4 37 23-59 21-62 (605)
358 TIGR03117 cas_csf4 CRISPR-asso 87.8 1.5 3.2E-05 55.4 8.5 78 386-476 469-560 (636)
359 CHL00095 clpC Clp protease ATP 87.8 3.7 8E-05 54.6 12.6 37 23-59 184-224 (821)
360 COG1435 Tdk Thymidine kinase [ 87.7 2.3 5.1E-05 44.7 8.4 91 38-158 7-97 (201)
361 cd01124 KaiC KaiC is a circadi 87.6 1.2 2.7E-05 47.4 6.8 48 38-91 2-49 (187)
362 PHA00729 NTP-binding motif con 87.4 2.6 5.6E-05 46.0 8.9 53 37-90 19-79 (226)
363 cd01129 PulE-GspE PulE/GspE Th 87.2 1.2 2.6E-05 50.5 6.6 54 22-80 64-120 (264)
364 PRK03992 proteasome-activating 87.1 2.2 4.7E-05 51.5 9.1 21 37-57 167-187 (389)
365 PRK12726 flagellar biosynthesi 87.1 7.3 0.00016 45.9 12.8 90 37-158 208-300 (407)
366 cd00984 DnaB_C DnaB helicase C 87.0 1.5 3.3E-05 49.0 7.4 36 38-77 16-51 (242)
367 COG2255 RuvB Holliday junction 86.9 2 4.3E-05 47.7 7.6 22 38-59 55-76 (332)
368 PF05707 Zot: Zonular occluden 86.9 2.4 5.3E-05 45.6 8.5 44 143-191 79-127 (193)
369 PRK06964 DNA polymerase III su 86.9 4.1 8.8E-05 47.8 10.8 37 23-59 3-45 (342)
370 PRK14969 DNA polymerase III su 86.3 3.2 6.9E-05 52.0 10.2 22 38-59 41-62 (527)
371 PRK08769 DNA polymerase III su 86.3 4.9 0.00011 46.7 11.0 39 21-59 4-50 (319)
372 PRK14712 conjugal transfer nic 86.2 2.6 5.6E-05 58.4 9.9 65 21-90 835-902 (1623)
373 PRK14957 DNA polymerase III su 86.1 4 8.7E-05 50.9 10.8 22 38-59 41-62 (546)
374 PRK08691 DNA polymerase III su 86.1 4.5 9.8E-05 51.3 11.2 22 38-59 41-62 (709)
375 PRK07764 DNA polymerase III su 86.0 2.7 5.9E-05 55.1 9.7 36 24-59 21-61 (824)
376 KOG0344 ATP-dependent RNA heli 86.0 4.1 8.8E-05 49.5 10.2 122 43-194 365-486 (593)
377 COG4626 Phage terminase-like p 85.9 12 0.00026 45.8 14.2 175 17-217 57-247 (546)
378 TIGR00064 ftsY signal recognit 85.9 10 0.00022 43.2 13.2 52 38-94 75-128 (272)
379 PHA03333 putative ATPase subun 85.8 5.8 0.00012 49.8 11.6 54 35-92 187-240 (752)
380 PF11469 Ribonucleas_3_2: Ribo 85.8 5.8 0.00013 36.4 8.6 80 998-1124 2-85 (120)
381 PRK00080 ruvB Holliday junctio 85.7 2.6 5.7E-05 49.6 8.7 37 22-58 29-74 (328)
382 PF01637 Arch_ATPase: Archaeal 85.6 3.1 6.8E-05 45.9 9.0 30 23-52 4-37 (234)
383 PRK09111 DNA polymerase III su 85.6 3.3 7.1E-05 52.5 9.8 22 38-59 49-70 (598)
384 PRK14948 DNA polymerase III su 85.4 3.4 7.5E-05 52.6 10.0 22 38-59 41-62 (620)
385 PRK14965 DNA polymerase III su 85.3 3.5 7.5E-05 52.3 10.0 35 25-59 23-62 (576)
386 PRK07940 DNA polymerase III su 85.3 6.9 0.00015 47.0 12.0 22 38-59 39-60 (394)
387 KOG2028 ATPase related to the 85.3 2.4 5.1E-05 48.3 7.3 29 29-57 152-184 (554)
388 cd03115 SRP The signal recogni 85.2 5.6 0.00012 41.8 10.2 24 38-61 3-26 (173)
389 TIGR03600 phage_DnaB phage rep 85.2 2.2 4.8E-05 52.2 8.0 53 38-95 197-250 (421)
390 TIGR00635 ruvB Holliday juncti 85.1 2.7 5.8E-05 48.9 8.4 21 37-57 32-52 (305)
391 COG2804 PulE Type II secretory 85.0 1.7 3.6E-05 52.4 6.4 38 22-59 242-282 (500)
392 PF00437 T2SE: Type II/IV secr 85.0 1.2 2.6E-05 50.8 5.3 52 24-80 114-167 (270)
393 PRK07133 DNA polymerase III su 84.9 3.2 7E-05 53.0 9.3 36 24-59 24-64 (725)
394 PRK10416 signal recognition pa 84.9 12 0.00027 43.5 13.4 126 38-191 117-245 (318)
395 PHA03368 DNA packaging termina 84.8 4.6 9.9E-05 50.4 10.1 126 37-189 256-389 (738)
396 PRK06090 DNA polymerase III su 84.6 5.9 0.00013 46.0 10.6 38 22-59 4-49 (319)
397 TIGR00643 recG ATP-dependent D 84.6 2.5 5.3E-05 54.6 8.3 79 386-471 283-362 (630)
398 TIGR01073 pcrA ATP-dependent D 84.5 1.5 3.2E-05 57.7 6.4 70 21-92 4-73 (726)
399 KOG1513 Nuclear helicase MOP-3 84.4 1.3 2.9E-05 54.7 5.3 60 442-501 851-922 (1300)
400 KOG0331 ATP-dependent RNA heli 84.4 6.7 0.00015 47.9 11.2 97 384-491 162-272 (519)
401 PF08423 Rad51: Rad51; InterP 84.4 3.9 8.5E-05 46.1 8.9 110 29-155 26-145 (256)
402 cd01121 Sms Sms (bacterial rad 84.1 4.6 0.0001 48.1 9.7 56 28-89 69-130 (372)
403 PRK04195 replication factor C 84.1 3.4 7.4E-05 51.4 9.1 23 37-59 41-63 (482)
404 PRK08451 DNA polymerase III su 84.1 8.3 0.00018 47.9 12.1 22 38-59 39-60 (535)
405 PRK08506 replicative DNA helic 84.0 2.1 4.6E-05 52.8 7.1 52 38-95 195-247 (472)
406 KOG0060 Long-chain acyl-CoA tr 83.9 5.9 0.00013 48.2 10.3 29 201-229 604-632 (659)
407 COG1618 Predicted nucleotide k 83.8 1.3 2.8E-05 44.9 4.1 105 37-156 7-113 (179)
408 PRK09361 radB DNA repair and r 83.8 5.5 0.00012 44.0 9.8 45 28-77 10-60 (225)
409 PF02456 Adeno_IVa2: Adenoviru 83.5 1.1 2.4E-05 50.0 3.8 41 38-82 90-131 (369)
410 PRK06995 flhF flagellar biosyn 83.5 4.5 9.8E-05 49.5 9.4 22 38-59 259-280 (484)
411 PRK05563 DNA polymerase III su 83.5 7.7 0.00017 49.0 11.9 37 23-59 21-62 (559)
412 PRK13341 recombination factor 83.3 3.6 7.8E-05 53.3 8.9 21 37-57 54-74 (725)
413 COG2874 FlaH Predicted ATPases 83.2 14 0.00031 39.6 11.5 129 38-192 31-169 (235)
414 cd01130 VirB11-like_ATPase Typ 83.2 1.9 4.2E-05 46.0 5.6 32 23-54 11-44 (186)
415 PRK09354 recA recombinase A; P 83.2 3.6 7.8E-05 48.1 8.0 50 28-82 46-102 (349)
416 COG0552 FtsY Signal recognitio 83.0 21 0.00045 41.0 13.6 125 38-193 142-272 (340)
417 KOG0739 AAA+-type ATPase [Post 83.0 5.1 0.00011 44.5 8.4 105 37-191 168-278 (439)
418 PHA02544 44 clamp loader, smal 82.9 9.1 0.0002 44.8 11.6 21 37-57 44-65 (316)
419 PRK09183 transposase/IS protei 82.9 1.4 3.1E-05 49.7 4.6 34 37-75 104-137 (259)
420 PRK14954 DNA polymerase III su 82.7 5.8 0.00013 50.4 10.2 22 38-59 41-62 (620)
421 TIGR02760 TraI_TIGR conjugativ 82.6 4.1 8.9E-05 58.8 9.9 66 20-90 1018-1086(1960)
422 COG4962 CpaF Flp pilus assembl 82.5 1.6 3.4E-05 50.0 4.7 53 23-81 159-213 (355)
423 TIGR00678 holB DNA polymerase 82.5 5.8 0.00013 42.4 9.0 23 37-59 16-38 (188)
424 PRK13709 conjugal transfer nic 82.2 5.8 0.00013 55.9 10.8 66 20-90 966-1034(1747)
425 PRK10436 hypothetical protein; 82.2 2.6 5.7E-05 51.5 6.8 54 22-80 202-258 (462)
426 PF05876 Terminase_GpA: Phage 82.1 2.5 5.5E-05 53.2 6.8 157 19-194 14-183 (557)
427 cd01131 PilT Pilus retraction 82.1 1.6 3.4E-05 47.2 4.4 40 37-80 3-42 (198)
428 cd01393 recA_like RecA is a b 82.1 6.3 0.00014 43.5 9.4 52 29-80 7-65 (226)
429 PRK06921 hypothetical protein; 82.1 2 4.3E-05 48.8 5.3 41 37-82 119-159 (266)
430 PTZ00454 26S protease regulato 82.0 4.9 0.00011 48.3 8.9 21 37-57 181-201 (398)
431 PRK05580 primosome assembly pr 81.9 10 0.00022 49.3 12.3 94 369-474 173-266 (679)
432 PRK00440 rfc replication facto 81.9 15 0.00033 42.9 13.0 37 23-59 22-62 (319)
433 TIGR00580 mfd transcription-re 81.9 4.1 8.9E-05 54.3 8.9 80 386-472 499-579 (926)
434 PRK14950 DNA polymerase III su 81.8 4 8.7E-05 52.0 8.5 22 38-59 41-62 (585)
435 PRK14721 flhF flagellar biosyn 81.8 8 0.00017 46.6 10.4 118 38-191 194-312 (420)
436 PRK06871 DNA polymerase III su 81.4 9.1 0.0002 44.6 10.5 37 23-59 4-48 (325)
437 PF14617 CMS1: U3-containing 9 81.0 2.2 4.8E-05 47.3 5.1 87 67-156 125-214 (252)
438 cd00561 CobA_CobO_BtuR ATP:cor 80.8 7.1 0.00015 40.3 8.3 34 36-74 3-36 (159)
439 KOG1807 Helicases [Replication 80.7 3.9 8.4E-05 50.9 7.2 73 19-91 376-450 (1025)
440 PRK11823 DNA repair protein Ra 80.4 6.4 0.00014 48.3 9.3 57 28-90 67-129 (446)
441 TIGR02525 plasmid_TraJ plasmid 80.1 3.2 7E-05 49.2 6.4 42 36-80 150-191 (372)
442 TIGR01420 pilT_fam pilus retra 79.9 2.8 6.2E-05 49.5 5.9 41 36-80 123-163 (343)
443 TIGR03819 heli_sec_ATPase heli 79.9 2.6 5.6E-05 49.5 5.5 51 24-80 165-217 (340)
444 TIGR02538 type_IV_pilB type IV 79.8 3.2 7E-05 52.5 6.7 54 22-80 300-356 (564)
445 KOG0349 Putative DEAD-box RNA 79.8 0.41 8.8E-06 54.8 -1.1 40 20-59 23-63 (725)
446 TIGR00595 priA primosomal prot 79.8 12 0.00025 46.8 11.5 94 369-474 8-101 (505)
447 PF01443 Viral_helicase1: Vira 79.8 1 2.3E-05 50.0 2.1 16 38-53 1-16 (234)
448 PLN03187 meiotic recombination 79.5 5.6 0.00012 46.7 8.0 52 29-80 114-172 (344)
449 KOG0733 Nuclear AAA ATPase (VC 79.4 4.8 0.0001 49.1 7.4 46 142-189 603-654 (802)
450 KOG0745 Putative ATP-dependent 79.3 2.1 4.6E-05 49.9 4.2 24 36-59 227-250 (564)
451 PF12846 AAA_10: AAA-like doma 79.3 2.1 4.6E-05 49.5 4.7 37 36-77 2-38 (304)
452 TIGR02640 gas_vesic_GvpN gas v 79.2 3.5 7.6E-05 46.7 6.2 35 23-57 4-43 (262)
453 PRK07004 replicative DNA helic 79.1 4.2 9.1E-05 50.0 7.2 114 38-156 216-337 (460)
454 COG0593 DnaA ATPase involved i 79.0 6.5 0.00014 46.9 8.3 20 37-56 114-134 (408)
455 PRK05748 replicative DNA helic 79.0 5.5 0.00012 49.1 8.2 114 38-156 206-327 (448)
456 PF03368 Dicer_dimer: Dicer di 78.8 7.9 0.00017 35.8 7.2 65 1326-1393 2-75 (90)
457 PRK05973 replicative DNA helic 78.7 3 6.5E-05 46.1 5.2 48 38-91 67-114 (237)
458 TIGR03877 thermo_KaiC_1 KaiC d 78.6 6.1 0.00013 44.1 7.8 57 28-90 8-70 (237)
459 PF06745 KaiC: KaiC; InterPro 78.4 5.5 0.00012 44.0 7.3 57 30-91 8-70 (226)
460 TIGR02788 VirB11 P-type DNA tr 78.3 2.6 5.7E-05 49.0 4.9 45 29-79 136-182 (308)
461 COG1197 Mfd Transcription-repa 78.2 5.1 0.00011 53.0 7.7 85 67-157 802-887 (1139)
462 PF03796 DnaB_C: DnaB-like hel 78.2 7.5 0.00016 44.0 8.5 125 29-157 8-144 (259)
463 PRK14953 DNA polymerase III su 78.1 14 0.0003 45.9 11.2 22 38-59 41-62 (486)
464 COG2812 DnaX DNA polymerase II 77.9 4.1 8.9E-05 50.0 6.4 22 38-59 41-62 (515)
465 TIGR01547 phage_term_2 phage t 77.8 8.8 0.00019 46.5 9.5 133 38-192 4-142 (396)
466 PF01745 IPT: Isopentenyl tran 77.8 3 6.6E-05 44.5 4.6 32 38-78 4-35 (233)
467 COG2805 PilT Tfp pilus assembl 77.6 1.5 3.2E-05 49.1 2.3 22 38-59 128-149 (353)
468 PHA00012 I assembly protein 77.5 5.6 0.00012 45.4 6.8 21 38-58 4-24 (361)
469 PRK09165 replicative DNA helic 77.5 9.1 0.0002 47.6 9.5 112 38-156 220-354 (497)
470 PRK10689 transcription-repair 77.3 6.7 0.00014 53.6 8.8 79 386-471 648-727 (1147)
471 TIGR00665 DnaB replicative DNA 77.2 8.9 0.00019 47.1 9.4 46 38-88 198-243 (434)
472 PRK06647 DNA polymerase III su 76.9 12 0.00025 47.4 10.2 22 38-59 41-62 (563)
473 COG0324 MiaA tRNA delta(2)-iso 76.9 6.3 0.00014 45.1 7.1 93 38-143 6-117 (308)
474 PRK13764 ATPase; Provisional 76.6 4 8.7E-05 51.3 6.0 48 28-80 248-297 (602)
475 PF05729 NACHT: NACHT domain 76.4 10 0.00022 39.1 8.4 24 38-61 3-26 (166)
476 TIGR01241 FtsH_fam ATP-depende 76.3 8.5 0.00018 48.1 8.9 21 37-57 90-110 (495)
477 PRK07993 DNA polymerase III su 76.2 11 0.00024 44.2 9.3 38 22-59 3-48 (334)
478 TIGR02397 dnaX_nterm DNA polym 76.2 11 0.00024 44.9 9.6 22 38-59 39-60 (355)
479 PRK08006 replicative DNA helic 76.1 8.3 0.00018 47.6 8.5 114 38-156 227-349 (471)
480 COG1200 RecG RecG-like helicas 76.1 11 0.00024 47.1 9.4 90 374-472 300-390 (677)
481 cd01123 Rad51_DMC1_radA Rad51_ 75.9 13 0.00027 41.4 9.4 49 29-77 7-62 (235)
482 PF13207 AAA_17: AAA domain; P 75.7 2.8 6E-05 41.1 3.6 22 38-59 2-23 (121)
483 KOG0740 AAA+-type ATPase [Post 75.6 5 0.00011 47.8 6.1 49 142-190 244-298 (428)
484 PF01935 DUF87: Domain of unkn 75.6 4.3 9.3E-05 45.0 5.5 43 31-77 19-61 (229)
485 TIGR02238 recomb_DMC1 meiotic 75.6 11 0.00024 43.8 8.9 52 29-80 84-142 (313)
486 PRK06904 replicative DNA helic 75.4 12 0.00026 46.3 9.6 114 38-156 224-347 (472)
487 PRK09376 rho transcription ter 75.3 5.5 0.00012 47.0 6.3 23 37-59 171-193 (416)
488 PRK06305 DNA polymerase III su 75.3 8.9 0.00019 47.1 8.5 22 38-59 42-63 (451)
489 TIGR00767 rho transcription te 75.2 4.9 0.00011 47.6 5.9 23 37-59 170-192 (415)
490 KOG0298 DEAD box-containing he 75.1 7.2 0.00016 51.6 7.7 115 367-496 1200-1315(1394)
491 TIGR02533 type_II_gspE general 74.9 4.6 0.0001 50.0 5.9 54 22-80 226-282 (486)
492 PF07728 AAA_5: AAA domain (dy 74.7 4.2 9.2E-05 40.9 4.7 23 37-59 1-23 (139)
493 PF00154 RecA: recA bacterial 74.5 11 0.00025 43.5 8.5 55 29-88 40-101 (322)
494 KOG0442 Structure-specific end 74.3 2.8E+02 0.006 36.1 24.5 152 22-192 14-166 (892)
495 KOG1041 Translation initiation 74.0 4.1 8.8E-05 54.0 5.4 78 834-930 280-361 (876)
496 COG0513 SrmB Superfamily II DN 74.0 11 0.00024 47.2 9.1 98 390-499 102-211 (513)
497 TIGR02655 circ_KaiC circadian 74.0 18 0.0004 44.9 11.0 59 27-91 249-313 (484)
498 COG1132 MdlB ABC-type multidru 73.4 10 0.00022 48.4 8.9 28 142-169 482-509 (567)
499 KOG1806 DEAD box containing he 73.1 5.2 0.00011 51.4 5.6 65 24-91 741-806 (1320)
500 TIGR02524 dot_icm_DotB Dot/Icm 73.0 4.8 0.0001 47.7 5.2 43 36-80 135-177 (358)
No 1
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=100.00 E-value=7.7e-70 Score=691.91 Aligned_cols=1180 Identities=26% Similarity=0.307 Sum_probs=772.5
Q ss_pred HHHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHH
Q 000607 85 AEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYAC 163 (1396)
Q Consensus 85 ~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~ 163 (1396)
......+++..+...++......|+..+|.......++.++|+..+++.+.+++..+.+..++++||||+.... |++..
T Consensus 4 ~~~~~~~~~~~~l~~~~~e~~~~~~s~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (1606)
T KOG0701|consen 4 ESFKSTHTPLKVLEVFPLESRGLSTSKRHKQECTHHHVSILTAIGALNLLFGGYLLLSDRVLLVFDECHNLVMDAHPRRH 83 (1606)
T ss_pred cchhhcccccccccccccccccccchhhhhhhhhhcccchhhhhhhhhhhcCchhhhhhhhhhccccccccccccCcchh
Confidence 33445556777777888877888887799999999999999999999999999999999999999999999976 77777
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
.|...-.. .....|+++|+||.+.+..... ++....+..++..+.+.+.+.++...+..|...|.+.....-..
T Consensus 84 ~~~~~~~~----~~~s~pr~~~~~a~~~~~~~~~--~~~~~~~k~~e~~~~~~~~t~~~~v~~~~~t~~~~~vm~~~~~~ 157 (1606)
T KOG0701|consen 84 FMDLSSSG----PSFSVPRILGLTASLLNDKFWL--EELDEDLKKLEYLSESRIETASDLVSLVRYTSNPFEVMVCCLDA 157 (1606)
T ss_pred hhhccccc----CCCCcchhhhccCCCcCCCcch--hhhhHHHHHHHHHHHhChhhhccceEeeeccCCCeEEeeehhhh
Confidence 66544311 1246799999999998876543 25667788888888888888877777777877777765532110
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchh----
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFF---- 319 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~---- 319 (1396)
.. .. ..- ..+..+..+ ..+.+.-.-.+.........-..|+||+.+........-....
T Consensus 158 ~~----~~----~~~-~~~~~~~~~--------~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~e~~~~~~~~~ 220 (1606)
T KOG0701|consen 158 EY----GP----LLI-NKDKLICVF--------LIPDCIVITFQKQYTLLKVLFKKGPWCSVKWIAQDVRELPKVIAGNP 220 (1606)
T ss_pred hh----hh----hhc-cccceeEEe--------ccCcceeeeccccchhhhhhcccCcchhhHHHHHHHhhcceeecCCH
Confidence 00 00 000 000000000 0000000000111112223345677777664433211110000
Q ss_pred ---hhh-hcccchHHHHHHHHHHHHHHHHHhcc-CCC-----ccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCee
Q 000607 320 ---AWE-QLDGFGETIIKKFGSDASQALVTYVP-SGA-----EWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIR 389 (1396)
Q Consensus 320 ---~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~-~~~-----~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k 389 (1396)
.+. +.-...............+.++.... ... .+.........+. ....+-+.+- .|.+ .....
T Consensus 221 ~~~~~~~e~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~l~~-~~~~~~v~k~--~l~~---~~~l~ 294 (1606)
T KOG0701|consen 221 AELHYCEEVFSDSELRFLMSIPRLLERLRDSKHEYIHQFEVLRKYEPHDVFRLIH-ESVCPLVDKE--YLEK---IETLS 294 (1606)
T ss_pred HHhhhhhhhcCcHHHHHHHhHHHHHHHhhhcchhhhcccceeeeecccccceeeh-hhcCchhhHH--HHHh---hhhhh
Confidence 000 00000111111111122222211100 000 0000000000000 0011111111 2222 23467
Q ss_pred EEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCc-----CCCCHHHHHHHHHHHhcCCeeEEEEecccccccCC
Q 000607 390 CIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI-----QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDV 464 (1396)
Q Consensus 390 ~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~-----~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDI 464 (1396)
+||||+.+.++..+..++.+. ....+.++.|..... .......|.+++..|+..++|+|++|++++||+|+
T Consensus 295 ~i~~~~~~~~~~~~~~~~~~~----~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~ 370 (1606)
T KOG0701|consen 295 GIIFVDQRYTAYVLLELLREI----FSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDV 370 (1606)
T ss_pred heeecccchHHHHHHHHHHHh----hccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcch
Confidence 899999999999999999987 345566677743211 01223458899999999999999999999999999
Q ss_pred CcccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHHHHHHHHhccCCCCCCCCCCCCCCc
Q 000607 465 QSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLSHASLPCSPLNNHMYGED 544 (1396)
Q Consensus 465 p~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~~~~~~~~~~~~~~~~~~~ 544 (1396)
+.|+.|+++|.|...++|+|+.||+++..+.++++....+...... .-....++..++.
T Consensus 371 ~~~~~~~~~~~~~~~~~~vq~~~r~~~~~~~~~i~~~t~~~~~~~~-~s~~~~~~i~~~~-------------------- 429 (1606)
T KOG0701|consen 371 PKCNLVVLFDAPTYYRSYVQKKGRARAADSYLVILGETLSAVSLKN-PSYAYTEQIPRPQ-------------------- 429 (1606)
T ss_pred hhhhhheeccCcchHHHHHHhhcccccchhhHHHHHhhhhhhhhcC-hhHhHHhhcccch--------------------
Confidence 9999999999999999999999999999998888876443222211 0111111111100
Q ss_pred ceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHH
Q 000607 545 FYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACK 624 (1396)
Q Consensus 545 ~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~ 624 (1396)
.+.....| ++.||+..-.-. ...+.-+|.||.++|...- +.-+|.
T Consensus 430 l~~~~~~~-----------v~~~~~~~e~~~-----------~~~~~~~v~~~~~~p~~~~-------------~~~~~~ 474 (1606)
T KOG0701|consen 430 LFLRLDAN-----------VNKYCARAELLK-----------HVPFLSTVVLPVNSPLKMC-------------IVGLCL 474 (1606)
T ss_pred hhcccccc-----------hHHHHHHHHhcc-----------CCCcceeEEEecCchHHHH-------------HHHhHH
Confidence 00011111 889998642110 1235568899988775532 123999
Q ss_pred HHHHcCCCCCCCCcccccchhhh----------------cccCCCCCCCCCCccCCccccCCCCCCCcceEEEEEEeec-
Q 000607 625 KLHQIGALTDNLLPDIVVEKHDA----------------QKRGNEPYNAEHPIYFPPELVNQSPQDTKITYHCYLIELK- 687 (1396)
Q Consensus 625 ~L~~~g~ldd~L~P~~~~~~~~~----------------~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~i~~~- 687 (1396)
+||++|++||+++|.+++..... ...++++....+....++.+.+.....++ ++|+|.+.+.
T Consensus 475 ~l~~~~~~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~-~c~~~~~~~~~ 553 (1606)
T KOG0701|consen 475 KLHKIGELDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQ-PCYLYVIGLEL 553 (1606)
T ss_pred HHHHhhhhhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCC-ceeeeeeccce
Confidence 99999999999999987653210 01112222222333444444443333333 3556666542
Q ss_pred ---CCCc----------cccccceEEEeecCcccccccccceeEEeeCCeEEEEEeecc-ccccCHHHHHHHHHHHHHHH
Q 000607 688 ---QHFN----------YDISARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLKHLG-RIQLIPNQVLLCRRFQITLF 753 (1396)
Q Consensus 688 ---~~~~----------~~~~~~~~~ll~~~~lp~~~~~~~~~l~~~~~~~~v~~~~~~-~~~~~~~~~~~~~~f~~~~f 753 (1396)
..+. ......+|++++-+.+|.. ++|+.+...|.+++.+.... ...+..++++....|+.++|
T Consensus 554 ~~~~~e~~n~~~r~~~~~~~~~~~~~~l~~~~i~~~---~~~~~a~~sG~~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~ 630 (1606)
T KOG0701|consen 554 TMPLPEERNFERRKLYPPEDLTYCFGILTAKLIPKI---PHFPVATRSGEVKVSLLLAFSEALVKSEQLDEIQEFLNYIF 630 (1606)
T ss_pred ecCCchhcccccccccCchhhhhhhcccchhhhccc---ccccceeccCchhHHHHHhhhhhhcchhhccCcchhcccch
Confidence 1111 0124678999999999984 69999999998888765433 23577888888999999999
Q ss_pred HHHhccccccchhhccccccccCCCCeEEEecCCCC------ccCceeeeeecccCCCCCCCCCCcccccccccccccCC
Q 000607 754 RVIMDHNLDKLNEILDGFELRDNLEIDYLLLPSTGQ------LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSG 827 (1396)
Q Consensus 754 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~------~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 827 (1396)
+.+.+... +. +...+......++++|.+.. .|+|..++.+..+....+.++.+. .....
T Consensus 631 ~~v~~~~~-----~~-~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~~~---------~~~~~ 695 (1606)
T KOG0701|consen 631 TEVLRLAK-----IN-LEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSKDE---------VRKAK 695 (1606)
T ss_pred hhhhhhhc-----cc-cccCCchhhHHHHhcccccccccchhhhHHHHHHHHhCcccccCCCChhh---------hhhhh
Confidence 99998531 11 11133456667888996522 788888887664433112211110 01233
Q ss_pred CcccccccCcEEecCcCC---eeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccc
Q 000607 828 PLCTCKIHNSLVCTPHNG---QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNY 904 (1396)
Q Consensus 828 ~~~~~~~~~~~V~~~~~~---~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~ 904 (1396)
.+...++++++++ +.+ -.|++..|.....|+|.|| +-.+.++..||..+|+..+.+..||++.++....+.|+
T Consensus 696 ~f~~~~~~~~~~~--~rn~~~~~~~~~~v~~~~~pss~~~--g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~ 771 (1606)
T KOG0701|consen 696 YFDGEDSQDAVGM--YRNDDQPQFYVAEVLPLLAPSSLFP--GLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNL 771 (1606)
T ss_pred hcccccchhhhhh--hhcccccceeeeeeeeeccchhcCC--Ccchheeeeeeeccccchhhhccccccccccchhhhcc
Confidence 4666778888777 322 1457889999999999997 34556888999999999999999999999999999999
Q ss_pred cchhhhcccCC-----C--Ccc--eeeecccccccccccccHHHHHHhhhhhhHHHHHHHHHHHHHHHH-----------
Q 000607 905 LSKCRQQKQKE-----P--SKI--SFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQSLLLAVNLKN----------- 964 (1396)
Q Consensus 905 l~~~~~~~~~~-----~--~~~--~~~L~pelC~~~~~p~~~~~~~~~~~lPsi~~~~~~~l~a~~l~~----------- 964 (1396)
+.++....... + .+. ...+--++ ..+|.+++.|+.+-++|.+++|++. .++..+.
T Consensus 772 ~~~r~~~~~~~~l~~~s~~~e~~~~es~~~~~---~~h~~~~s~~~~~~~~p~~v~~v~~--tg~~~s~~ta~~li~~~~ 846 (1606)
T KOG0701|consen 772 LVPRGDNQKGSALPNSSSETERLKDESLEHSL---IIHPALASLWRRAVCLPEILYRVLL--TGALVSLSTAVDLIPHDF 846 (1606)
T ss_pred cCchhhccccceeecccchhhhhhHHHhhccC---CCCcCcchhhhhhccCcchheeecc--ccceeeeecccchhhhhh
Confidence 98864321110 0 000 01122222 3578889999999999999998742 1221110
Q ss_pred -HHh-hcc------------------------------------------------------------------------
Q 000607 965 -MLL-DHC------------------------------------------------------------------------ 970 (1396)
Q Consensus 965 -~l~-~~~------------------------------------------------------------------------ 970 (1396)
.+. ..|
T Consensus 847 ~~i~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~~~~ 926 (1606)
T KOG0701|consen 847 SSILSKSFEKEASKSDKNKDEYSCDLALPKENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVADQV 926 (1606)
T ss_pred hhccchhhccccccCCCCccccceeecccCCCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCccccchh
Confidence 000 000
Q ss_pred ------------c----c--------------------CC--------------------CCC---------------HH
Q 000607 971 ------------M----Q--------------------NV--------------------TIP---------------TI 979 (1396)
Q Consensus 971 ------------~----~--------------------~~--------------------~~~---------------~~ 979 (1396)
+ . .. .++ ..
T Consensus 927 ~~~~~~i~~a~~p~~~~~~~~~~~~~s~~~~n~l~~~~~~~~~~~s~~~~~~~~~E~~e~i~n~~~~Fs~~~~~i~~~~s 1006 (1606)
T KOG0701|consen 927 LAKRESISLATRPELVSPFIPEPPTTSHLISNRLSPSSPSNSDLNSLLPNKRSDWEAVEKILNFRYVFSISLASIALSTS 1006 (1606)
T ss_pred hhhccccccccCcccccccccCCchhhhhhhhhcCccCCCCCCcccccccccccccccccccccceeccccccccccchh
Confidence 0 0 00 001 26
Q ss_pred HHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccC
Q 000607 980 KVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFD 1059 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~ 1059 (1396)
+|+||||++++.+.++|||||+||||+||++++.++|.+||+.+||+|+.+|+..++|.+|+++|...||++|++.+.|.
T Consensus 1007 ~LLEAlT~~~~~~s~s~Erle~Lgds~Lk~avsr~l~L~ypd~~Egqls~lr~~~~~~~nl~~la~~~gl~~~~~~~~fe 1086 (1606)
T KOG0701|consen 1007 LLLEALTTSSCQDSFSLERLELLGDSLLKLAVSRHLFLTYPDLDEGQLSRLRDVNVSNDNLARLAVKKGLYSYLRHEGFE 1086 (1606)
T ss_pred HHHHHhhcCccccchhHHHHHhhHHHHHHHHHHHHHHHhCCcccchhHHHHHHhcccccchhhhhhcccchhhccccccc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccCCCCCC----CCCccC-----------ccccc-----CC---ccccccc--ceecccchhhHHHHHHHHHHhhcC
Q 000607 1060 PKMWIIPGDNS----GSYELN-----------DDSLF-----NG---RKIYVTG--RKKVKSKTVADVVEALIGAFLSTG 1114 (1396)
Q Consensus 1060 ~~~w~~~~~~~----~~~~~~-----------~~~~~-----~~---~~~~~~~--~~~~~~k~~aD~~EAliGA~~~~~ 1114 (1396)
|..|..|+... .+.+.. ++... ++ ...+..+ .++...|++||++|||+||+|+|+
T Consensus 1087 p~~~~~p~~~~~~~~~~k~~~~~~~~~~~~e~~e~~~df~e~~~~~~~~~~~~~~~~~~~~~ks~adl~eaLlga~~vD~ 1166 (1606)
T KOG0701|consen 1087 PSRWWVPGQLDVNNVDCKDLSGDQNYILYKELDEKIKDFQEAMEKEDGDSRSKGGDHDWLAPKSPADLLEALLGAIYVDG 1166 (1606)
T ss_pred ccccccccccccccccccccccccccccccchhhhhhHHHHhhhccCCcccccccccceecCCCHHHHHHHHHHhhhhhc
Confidence 98766665421 111110 00000 00 0011112 468899999999999999999999
Q ss_pred ChhHHH-----HHHhhcCccccCCCcc-----------------------------------------------------
Q 000607 1115 GENVGL-----IFLDRIGIKVDFVNVP----------------------------------------------------- 1136 (1396)
Q Consensus 1115 G~~~a~-----~~~~~l~~~~~~~~~~----------------------------------------------------- 1136 (1396)
|...+. .+|+|.++...+....
T Consensus 1167 ~~~~~~~~~~~~~lk~~~~~~dy~~~e~~~~~~~~~~~s~~~~~~~~~~ler~l~~~~~~~~~~l~~~~~~~~s~~~~~l 1246 (1606)
T KOG0701|consen 1167 GLLETFETIGDSFLKWSITNYDYDTLEPKHAGKLSFRRSKIVKKKNLDRLERELGLKFKFLEAALLVQAFIHCSLRAEGL 1246 (1606)
T ss_pred cchhhhhHHHHHHHhhhhhhhhhhcccccchhhhhhhhhhHhhhhhHHHHHHhhcccchhhhhhcchhhccccccccccc
Confidence 998777 8899998765421000
Q ss_pred --ccc-------------------------------------c-------------------------------------
Q 000607 1137 --YQR-------------------------------------Q------------------------------------- 1140 (1396)
Q Consensus 1137 --~~~-------------------------------------~------------------------------------- 1140 (1396)
+++ +
T Consensus 1247 d~~erl~~~~d~vld~l~~~~~~~~~~~~~~~~lt~~~~~~v~~l~e~~~~~~v~~~l~~~l~~~s~~~~K~i~d~v~sl 1326 (1606)
T KOG0701|consen 1247 DATERLEFLGDAVLDKLSDKHPFEVFIRLDGGELTDLREAGVNTLNENDLNVKVPKSLPYNLLDQSSVLEKSIADSVEAL 1326 (1606)
T ss_pred chHHHHHhhHHHHHHHHHHhhhHhhhhcccCcchhhhhhhhhhhhhhcccccccCCcceeeehhhccCccchHHHHHHHh
Confidence 000 0
Q ss_pred --------cccC--------------------------hhhHHhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCcc
Q 000607 1141 --------FQVH--------------------------AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCY 1186 (1396)
Q Consensus 1141 --------~~~~--------------------------~~~~~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~y 1186 (1396)
.+.. ......+..+|+.+||.|.++.++.+|+||.||..+....||
T Consensus 1327 i~~~~~~~~~~s~l~~~~~~~~l~~i~es~~~~~~~~~~~~l~~~~~~e~~l~y~f~~~~~l~~a~th~s~~~~~~~~C~ 1406 (1606)
T KOG0701|consen 1327 IGASLSEGGPSSALLFMDWPPILLDIPESIASPDSIDELRQLLSFGKFEEKLNYRFKLKPYLTQATTHASYIYNRITDCY 1406 (1606)
T ss_pred hhhhhhccCCCccccccccccccccccccccccchhHHHHHHHHHHhhhcccchhhhhhhcccccccccccccCccchhh
Confidence 0000 000112567889999999999999999999999888889999
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
||||||||+|++++|++|+|...+..+||.++++|+++|+|...|.+|++.++|+|+...+..+...|..++....+...
T Consensus 1407 qrleflgd~vld~~it~hl~~~~~~~sp~~~td~rsa~vnn~~~a~~av~~~~~K~~~~~~~~l~~~I~~~v~~~~q~~~ 1486 (1606)
T KOG0701|consen 1407 QRLEFLGDAVLDYLITKHLYEDPRQHSPGVLTDLRSALVNNTIFASLAVKADLHKFIIAASPGLIHNIDRFVSFQLQSNL 1486 (1606)
T ss_pred hhHHHhHHhhhhhhhhhcccccccccCchhhhhhhhHhhccccchhhHHhhcchhHHHhhccccccchHHHHHHHHhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998888777
Q ss_pred CCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCcccccCCchhHHHHHHHhcCCCCCcceee
Q 000607 1267 GSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPETMRFHPVRELTEYCQKNHFSMKKPVAS 1346 (1396)
Q Consensus 1267 ~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~~~~~~~p~~~L~~~~~~~~~~~~~~~~~ 1346 (1396)
....+|.+....||+++|+||++.||||+|+|...+.+..-+.+.-..-...+....||++.+...+. ..
T Consensus 1487 ~~~~~~~edievpKa~gdi~esiagai~~dsg~~~~~~~~~~~a~p~~s~~~E~~~~h~~~~~~~~~~----------k~ 1556 (1606)
T KOG0701|consen 1487 DSLFGWEEDIEVPKALGDIFESIAGAIKLDSGNMMEPCIEKFWALPPRSPIRELLELHPERALFGKCE----------KV 1556 (1606)
T ss_pred ccCCCchhhcccchhhhhhhhcccceeecCcccccchHhhcCcCCCCccchhhhccccceeeccchhh----------hh
Confidence 77779999999999999999999999999999654443322222111111112233444443322222 22
Q ss_pred ccCCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1347 RISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1347 ~~~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
.+.|....+|.|..+|. . .|.|.+++.||..|++.|++.|+..+.
T Consensus 1557 ~d~~~~~~tv~~~~~~~--~-~~~g~~~~~aK~s~~k~A~~ll~~~~~ 1601 (1606)
T KOG0701|consen 1557 ADAGKVRVTVDVFNKEV--F-AGEGRNYRIAKASAAKAALKLLKKLGL 1601 (1606)
T ss_pred hhccceEEEEEecccch--h-hhcchhhhhhhhhHHHHHHHHHHHhhh
Confidence 23344444454444444 3 688999999999999999998886653
No 2
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=1.7e-56 Score=501.74 Aligned_cols=462 Identities=25% Similarity=0.324 Sum_probs=324.5
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---e
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL---K 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~---~ 95 (1396)
.+.+|.||..+...++.+|++|++|||.|||+||+++|...+. ..++ +++||+||++||.|+++.+++.+++ .
T Consensus 13 ~ie~R~YQ~~i~a~al~~NtLvvlPTGLGKT~IA~~V~~~~l~---~~~~-kvlfLAPTKPLV~Qh~~~~~~v~~ip~~~ 88 (542)
T COG1111 13 TIEPRLYQLNIAAKALFKNTLVVLPTGLGKTFIAAMVIANRLR---WFGG-KVLFLAPTKPLVLQHAEFCRKVTGIPEDE 88 (542)
T ss_pred cccHHHHHHHHHHHHhhcCeEEEecCCccHHHHHHHHHHHHHH---hcCC-eEEEecCCchHHHHHHHHHHHHhCCChhh
Confidence 4569999999999999999999999999999999998875543 3344 8999999999999999999999876 6
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|....+ .....+...+|+|+|||++.|.+.+|.+++.++++|||||||++.++++|..+++.+..
T Consensus 89 i~~ltGev~p~-----~R~~~w~~~kVfvaTPQvveNDl~~Grid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~----- 158 (542)
T COG1111 89 IAALTGEVRPE-----EREELWAKKKVFVATPQVVENDLKAGRIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR----- 158 (542)
T ss_pred eeeecCCCChH-----HHHHHHhhCCEEEeccHHHHhHHhcCccChHHceEEEechhhhccCcchHHHHHHHHHH-----
Confidence 77899986544 22334447899999999999999999999999999999999999999999999998873
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccC--hhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCAS--ESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~--~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....|+|+||||||+... +.+.+...+|+-.-..+++ -.++..|+.. ..+.+-..++|.++.+ +
T Consensus 159 -~~k~~~ilgLTASPGs~~---------ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~---~kve~ikV~lp~e~~~-i 224 (542)
T COG1111 159 -SAKNPLILGLTASPGSDL---------EKIQEVVENLGIEKVEVRTEEDPDVRPYVKK---IKVEWIKVDLPEEIKE-I 224 (542)
T ss_pred -hccCceEEEEecCCCCCH---------HHHHHHHHhCCcceEEEecCCCccHHHhhcc---ceeEEEeccCcHHHHH-H
Confidence 356799999999998643 3688888888865444433 3455555554 3344455566777654 7
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHH-HHHHH-------HHHhHHHHHHH----HHHHHhhccccchhhh
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKIN-STLLY-------CLSELGVWLAL----KAAETISCYESDFFAW 321 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~-------~~~~lg~~~a~----~~~~~~~~~~~~~~~~ 321 (1396)
.+.+.+..++....|+..++..+...-.++.+..+. ..... +..-++..... .+.+++.
T Consensus 225 r~~l~~~l~~~Lk~L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elle--------- 295 (542)
T COG1111 225 RDLLRDALKPRLKPLKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLE--------- 295 (542)
T ss_pred HHHHHHHHHHHHHHHHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHH---------
Confidence 777777777777777766554422211112221111 00000 00111111100 0111111
Q ss_pred hhcccchHHHHHHHHHHHHHHHHH-------hccCCCccccCC-CCcccCCCCCccHHHHHHHHHHhhh-cCCCCeeEEE
Q 000607 322 EQLDGFGETIIKKFGSDASQALVT-------YVPSGAEWSIGD-DSKFNLDSGLLTEKIVCLIESLLEY-RGVEDIRCII 392 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~-------~~~~~~~~~~~~-~~~~~~~~~~~s~Kv~~L~~~L~~~-~~~~~~k~II 392 (1396)
........+|+.+..+.-.. .+..++.+..+. ........+..+||+..+.++++++ ...++.|+||
T Consensus 296 ----tqGi~~~~~Yl~~l~e~~~~~~sk~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIV 371 (542)
T COG1111 296 ----TQGIRPFYQYLEKLEEEATKGGSKAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIV 371 (542)
T ss_pred ----hhChHHHHHHHHHHHHHhcccchHHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEE
Confidence 11111222333322221111 000000000000 0000112344599999999999985 4567799999
Q ss_pred EechHHHHHHHHHHHHhhcCCCCCceeeEEecCCC--CcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEE
Q 000607 393 FVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLV 470 (1396)
Q Consensus 393 Fv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~--~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lV 470 (1396)
|++.|.||+.+...|....+. .+ ..+.|..+ +..||++++|.+++++||+|++|+||||||+|||+|||+|++|
T Consensus 372 FT~yRdTae~i~~~L~~~~~~---~~-~rFiGQa~r~~~~GMsQkeQ~eiI~~Fr~Ge~nVLVaTSVgEEGLDIp~vDlV 447 (542)
T COG1111 372 FTEYRDTAEEIVNFLKKIGIK---AR-VRFIGQASREGDKGMSQKEQKEIIDQFRKGEYNVLVATSVGEEGLDIPEVDLV 447 (542)
T ss_pred EehhHhHHHHHHHHHHhcCCc---ce-eEEeeccccccccccCHHHHHHHHHHHhcCCceEEEEcccccccCCCCcccEE
Confidence 999999999999999986322 22 47778543 4478999999999999999999999999999999999999999
Q ss_pred EEeCCCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHHHHHH
Q 000607 471 IMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMRKEVL 526 (1396)
Q Consensus 471 I~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~ 526 (1396)
|+||+..|++.+|||+||+||.. |++++++.++..+ ...+....+.|+.|.+...
T Consensus 448 ifYEpvpSeIR~IQR~GRTGR~r~Grv~vLvt~gtrd-eayy~~s~rke~~m~e~i~ 503 (542)
T COG1111 448 IFYEPVPSEIRSIQRKGRTGRKRKGRVVVLVTEGTRD-EAYYYSSRRKEQKMIESIR 503 (542)
T ss_pred EEecCCcHHHHHHHhhCccccCCCCeEEEEEecCchH-HHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999975 7888888877433 3344555667777876543
No 3
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=2.2e-50 Score=480.36 Aligned_cols=435 Identities=28% Similarity=0.355 Sum_probs=286.6
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CCeEE
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DLKVG 97 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~~v~ 97 (1396)
...+|+||.|+...|+.+|+||++|||+|||+||+.++..+.++ .+..+++|+|||++|+.||.+.+...+ +..+.
T Consensus 60 ~~~lR~YQ~eivq~ALgkNtii~lPTG~GKTfIAa~Vm~nh~rw---~p~~KiVF~aP~~pLv~QQ~a~~~~~~~~~~~T 136 (746)
T KOG0354|consen 60 NLELRNYQEELVQPALGKNTIIALPTGSGKTFIAAVIMKNHFEW---RPKGKVVFLAPTRPLVNQQIACFSIYLIPYSVT 136 (746)
T ss_pred cccccHHHHHHhHHhhcCCeEEEeecCCCccchHHHHHHHHHhc---CCcceEEEeeCCchHHHHHHHHHhhccCcccce
Confidence 45589999999999996699999999999999999988876554 345779999999999999998888765 45666
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccc-cceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKL-NMIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l-~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
...|+.... ..........+|+|+|||++.+.|.++...- +.+.+||||||||+.++|+|+.||+.|...
T Consensus 137 ~~l~~~~~~----~~r~~i~~s~~vff~TpQil~ndL~~~~~~~ls~fs~iv~DE~Hra~kn~~Y~~Vmr~~l~~----- 207 (746)
T KOG0354|consen 137 GQLGDTVPR----SNRGEIVASKRVFFRTPQILENDLKSGLHDELSDFSLIVFDECHRTSKNHPYNNIMREYLDL----- 207 (746)
T ss_pred eeccCccCC----CchhhhhcccceEEeChHhhhhhcccccccccceEEEEEEcccccccccccHHHHHHHHHHh-----
Confidence 666653222 1223445589999999999999999876544 899999999999999999999999988753
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe--ccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT--CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~--~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
....++||||||||+..- .++.+.+..|+..|+.+... ....+++.++...|.. .. ... ....
T Consensus 208 k~~~~qILgLTASpG~~~-----~~v~~~I~~L~asldvr~~ssi~~~y~~lr~~~~i~v~-~~-~~~--------~~~~ 272 (746)
T KOG0354|consen 208 KNQGNQILGLTASPGSKL-----EQVQNVIDNLCASLDVRTESSIKSNYEELREHVQIPVD-LS-LCE--------RDIE 272 (746)
T ss_pred hhccccEEEEecCCCccH-----HHHHHHHHhhheecccchhhhhhhhHHHHhccCcccCc-HH-Hhh--------hhhh
Confidence 234569999999998321 26777788888777765443 2344555555444443 11 111 1122
Q ss_pred HHHHHHHHHHHhhhhhhchhhHH----------HHHHHHH-----------HH--HHHHHHHHHHHhHHHH--HHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQ----------AELIRKK-----------VS--KINSTLLYCLSELGVW--LALKAAE 309 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~----------~~~~~~~-----------~~--~~~~~~~~~~~~lg~~--~a~~~~~ 309 (1396)
..+..+.+++...+...++.... .....+. +. .+.......+..=|.. .+..+.+
T Consensus 273 ~~f~~~i~p~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~f~~~~~~~~~~~ll~~~gir~~~~l~~~~ 352 (746)
T KOG0354|consen 273 DPFGMIIEPLLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNCFYALHLRKYNLALLISDGIRFVDALDYLE 352 (746)
T ss_pred hhHHHHHHHHHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhhHHHHHHHHHHHHHHhhcchhhHHHHhhhh
Confidence 22333333333333321211100 0000000 00 0000000000000111 0000000
Q ss_pred Hhhccccch-hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-hcCCCC
Q 000607 310 TISCYESDF-FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-YRGVED 387 (1396)
Q Consensus 310 ~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~~~~~~ 387 (1396)
-........ ..+...+. . ...++......+.. +.. ..+...||+..|.++|.+ |...++
T Consensus 353 ~f~~e~~~~k~~~~~~e~---~-~~~~~~~~m~~~~~-l~~--------------~~~~~npkle~l~~~l~e~f~~~~d 413 (746)
T KOG0354|consen 353 DFYEEVALKKYLKLELEA---R-LIRNFTENMNELEH-LSL--------------DPPKENPKLEKLVEILVEQFEQNPD 413 (746)
T ss_pred hhccccchhHHHHHHhcc---h-hhHHHHHHHHhhhh-hhc--------------CCCccChhHHHHHHHHHHHhhcCCC
Confidence 000000000 00000000 0 00111111111111 100 112458999999999988 466788
Q ss_pred eeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCC--cCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 388 IRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 388 ~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~--~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.|+||||++|..|..|..+|.+... .++++..+.|.+++ ..+|++++|++++++||+|++|+||||||+|||+||+
T Consensus 414 sR~IIFve~R~sa~~l~~~l~~~~~--~~ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G~~NvLVATSV~EEGLDI~ 491 (746)
T KOG0354|consen 414 SRTIIFVETRESALALKKWLLQLHE--LGIKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDGEINVLVATSVAEEGLDIG 491 (746)
T ss_pred ccEEEEEehHHHHHHHHHHHHhhhh--cccccceeeeccccccccccCHHHHHHHHHHHhCCCccEEEEecchhccCCcc
Confidence 9999999999999999999996322 47899999997643 3589999999999999999999999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEe
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVK 501 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~ 501 (1396)
.||+||+||...|+..+|||+||+|..+|++++++.
T Consensus 492 ec~lVIcYd~~snpIrmIQrrGRgRa~ns~~vll~t 527 (746)
T KOG0354|consen 492 ECNLVICYDYSSNPIRMVQRRGRGRARNSKCVLLTT 527 (746)
T ss_pred cccEEEEecCCccHHHHHHHhccccccCCeEEEEEc
Confidence 999999999999999999999996666788888887
No 4
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=100.00 E-value=3.3e-49 Score=427.79 Aligned_cols=404 Identities=24% Similarity=0.298 Sum_probs=327.6
Q ss_pred ccccHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhhccccCCCCCHHHHHHHhcccCcccc-------------------
Q 000607 933 APISLSTFYSFTFVPSIMHRLQSLLLAVNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQED------------------- 993 (1396)
Q Consensus 933 ~p~~~~~~~~~~~lPsi~~~~~~~l~a~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~------------------- 993 (1396)
-.+..+++.-++++|-..|+|....-..-|.+.|+|.|++. .++.-||||||...+
T Consensus 17 tg~~~dv~~h~~m~~~~~~hir~~~~l~~~e~~i~y~f~~r-----~~~~lal~h~s~~~~~Gt~~dh~kns~tncg~r~ 91 (533)
T KOG1817|consen 17 TGIRSDVCQHAMMLPVLTHHIRYHQSLDHLEELIGYTFQDR-----CLLQLALTHPSHKLNYGTNPDHAKNSLTNCGIRQ 91 (533)
T ss_pred hCcchHHHHHHHHHHHHhhhhhHHHhHHHHHHHhCeeecch-----HHHHHHhcCchHHhhCCCCchhhhccccccCcCC
Confidence 44667888889999999999998888889999999999997 778889999986311
Q ss_pred --------------------------------------CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 994 --------------------------------------FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 994 --------------------------------------~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..+||||||||++..+++|.++|..+|...||-|-..|..+|
T Consensus 92 ~~yg~~~~~~~~kr~~gin~li~imk~l~~~~~~~s~i~hnErle~lgdavve~~ss~hl~~~~~r~~eggLatyrta~v 171 (533)
T KOG1817|consen 92 PKYGDRKEHIMTKRKLGINTLINIMKRLGVIQPTHSVIKHNERLEFLGDAVVELLSSNHLYFMFPRLEEGGLATYRTAIV 171 (533)
T ss_pred cccchhHHHHHHHHHhhhhHHHHHHhhccCCCCchhHhHHHHHHHHHhhccHHHHHHHHHHHccccccccchhHHHHHHH
Confidence 068999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
.|++|+.+|+++.++.|+. +.-|.. .|... --...+|++|||+|||.|+++|
T Consensus 172 qnr~la~lakklrkd~fl~---------yahg~d---l~~~~----------------E~Kha~an~feavi~a~~l~g~ 223 (533)
T KOG1817|consen 172 QNRHLAKLAKKLRKDEFLL---------YAHGYD---LCFET----------------ELKHAMANCFEAVIGAKYLDGG 223 (533)
T ss_pred HhHHHHHHHHHHHHHHHHH---------HhcCcc---hhhHH----------------HHHHHHHHHHHHHhHHHHHhcc
Confidence 9999999999999999998 444431 01111 2357899999999999999999
Q ss_pred hhHHHHHHhhc--Ccc----ccCCCccc---ccccccC-------hhhHHhHHHHHHHcCcccCCHHHHHHHhccCCCCC
Q 000607 1116 ENVGLIFLDRI--GIK----VDFVNVPY---QRQFQVH-------AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYML 1179 (1396)
Q Consensus 1116 ~~~a~~~~~~l--~~~----~~~~~~~~---~~~~~~~-------~~~~~~~~~le~~lgy~f~~~~ll~~Alth~S~~~ 1179 (1396)
...+....+.. +.+ ..|...+. +.+-|.. .+....+.++|+++|..|.+.+++.+|+|-.|...
T Consensus 224 ~~~~e~lfs~~~~~~epvlee~w~~~~ehelq~~ep~gDr~~~~~~Ppllp~~~~e~~~g~vF~Hirlla~aft~rs~~~ 303 (533)
T KOG1817|consen 224 LVVAEKLFSRALFVYEPVLEEEWEHEPEHELQEQEPAGDRVLITKYPPLLPLTQFEEIIGIVFIHIRLLARAFTLRSIPF 303 (533)
T ss_pred hHHHHHHHHHHhhccCchhhccccCCCcCcccccCCCccccccccCCCCCchhhHHHHHHHHHHHHHHHHHHhhccCCCc
Confidence 88776554332 111 12222221 1111110 01123467899999999999999999999999764
Q ss_pred CC-CCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhH
Q 000607 1180 PE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITV 1258 (1396)
Q Consensus 1180 ~~-~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~ 1258 (1396)
++ ...+|||||||||+||++++|++||.+||+..+|.|+.+|+.+|||++-+.+|..+|+++++..+...-.. .
T Consensus 304 n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li~n~~~k~~-----~ 378 (533)
T KOG1817|consen 304 NHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLITNFDLKDF-----Q 378 (533)
T ss_pred hhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhhhCcchhhh-----h
Confidence 33 35799999999999999999999999999999999999999999999999999999999999887643111 0
Q ss_pred hhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCcc---cccCCchhHHHHHHHh
Q 000607 1259 DSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITPE---TMRFHPVRELTEYCQK 1335 (1396)
Q Consensus 1259 ~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~~---~~~~~p~~~L~~~~~~ 1335 (1396)
...-|.+||+|||+|||+|+|.|. +.|.+|+..++.|.+..- ....+|++.|+++|-.
T Consensus 379 -----------------~lk~K~~ADlfEAfiGaLyvD~~l--e~~~qf~~~l~~Prl~~fi~nq~wndpkskLqq~cl~ 439 (533)
T KOG1817|consen 379 -----------------NLKLKDYADLFEAFIGALYVDKGL--EYCRQFLRVLFFPRLKEFIRNQDWNDPKSKLQQCCLT 439 (533)
T ss_pred -----------------hhhHHHHHHHHHHHHHHHhhcCCc--HHHHHHHHHHhhHHHHHHHHhhhccCcHHHHHHHHHH
Confidence 234689999999999999999766 789999999999987542 2347899999999986
Q ss_pred cCCC------CCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1336 NHFS------MKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1336 ~~~~------~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
..+. ++.|.+....|+ ..|+|.|+++|+.+| +|.|+|.+.|+.+||+.||+.++.-+|
T Consensus 440 ~rys~~~epdip~y~V~~~~gpa~~r~y~Vavyf~gkrla-t~~G~nik~Ae~rAA~~ALe~~~~dF~ 506 (533)
T KOG1817|consen 440 LRYSLGGEPDIPLYKVLGAKGPANDRNYKVAVYFKGKRLA-TGVGSNIKQAEMRAAMQALENLKMDFS 506 (533)
T ss_pred HhcccCCCCCCceEEEecccCCCCCCceEEEEEECCEEEe-eccCchHhHHHHHHHHHHHHHHHhhhH
Confidence 5443 566777766664 359999999999999 899999999999999999999985443
No 5
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=100.00 E-value=3.5e-42 Score=367.25 Aligned_cols=222 Identities=32% Similarity=0.425 Sum_probs=199.8
Q ss_pred HhHHHHHHHcCcccCCHHHHHHHhccCCCCCCC-CCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCc
Q 000607 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPE-IPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNN 1227 (1396)
Q Consensus 1149 ~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~-~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n 1227 (1396)
..+..+++.+||.|+|+.||.+||||+||.... ...+||||||||||||+++|++|||++||+.++|+||.+|+.+||+
T Consensus 6 ~~~~~l~~~lg~~f~~~~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV~~ 85 (235)
T COG0571 6 KKLEALEKKLGYTFKDKELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALVSE 85 (235)
T ss_pred HHHHHHHHHhCCCcCCHHHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHH
Confidence 347889999999999999999999999997432 5689999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHH
Q 000607 1228 DCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQS 1307 (1396)
Q Consensus 1228 ~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~ 1307 (1396)
+.|+.+|..+||++||+.++++.... +...+++++|+|||+|||||+|+|. +.+++|
T Consensus 86 ~~La~ia~~l~l~~~l~lg~ge~~~g---------------------g~~~~silaD~~EAligAiylD~g~--~~~~~~ 142 (235)
T COG0571 86 ESLAEIARELGLGDYLRLGKGEEKSG---------------------GRRRESILADAFEALIGAIYLDSGL--EAARKF 142 (235)
T ss_pred HHHHHHHHHhCccchhhccCChhhcC---------------------CCCchhHHHHHHHHHHHHHHHhCCh--HHHHHH
Confidence 99999999999999999999876542 2457899999999999999999994 799999
Q ss_pred hhhccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHH
Q 000607 1308 IRPLLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVA 1381 (1396)
Q Consensus 1308 ~~~~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~A 1381 (1396)
+.+++.|.+.. .....||+++||||+|..+...|.|++..+.|+ ..|++.|.++|..++ +|.|+|+|+|++.|
T Consensus 143 i~~l~~~~~~~~~~~~~~~D~Kt~LQe~~q~~~~~~p~Y~~v~~~g~~h~~~F~v~v~v~~~~~g-~G~G~skk~AEq~A 221 (235)
T COG0571 143 ILKLFLPRLEEIDAGDQFKDPKTRLQELLQAQGLVLPEYRLVKEEGPAHDKEFTVEVAVGGKELG-TGKGRSKKEAEQAA 221 (235)
T ss_pred HHHHHHHHHhhccccccccChhHHHHHHHHhcCCCCCeEEEeeccCCCCCceEEEEEEECCeeEE-EecccCHHHHHHHH
Confidence 99999988753 223389999999999999999999998887774 459999999999988 99999999999999
Q ss_pred HHHHHHHhhhhCC
Q 000607 1382 CKEVLKSLRASFP 1394 (1396)
Q Consensus 1382 A~~AL~~L~~~~~ 1394 (1396)
|+.||+.|....+
T Consensus 222 A~~al~~l~~~~~ 234 (235)
T COG0571 222 AEQALKKLGVKEP 234 (235)
T ss_pred HHHHHHHhccccC
Confidence 9999999987654
No 6
>PRK12371 ribonuclease III; Reviewed
Probab=100.00 E-value=8.4e-42 Score=371.12 Aligned_cols=218 Identities=27% Similarity=0.300 Sum_probs=190.3
Q ss_pred HhHHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCch
Q 000607 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNND 1228 (1396)
Q Consensus 1149 ~~~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~ 1228 (1396)
..+..||++|||+|+|+.||.+||||+|+. .....+||||||||||||+++|++|||.+||+.++|+||.+|+.+|||.
T Consensus 10 ~~~~~le~~lgy~F~~~~Ll~~AlTH~S~~-~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n~ 88 (235)
T PRK12371 10 ATASILEERTGHRFANKERLERALTHSSAR-ASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNAE 88 (235)
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHcCcCcc-cCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhChH
Confidence 457889999999999999999999999996 3334699999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHh
Q 000607 1229 CYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSI 1308 (1396)
Q Consensus 1229 ~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~ 1308 (1396)
+|+.+|.++||++||+.++..... .....+|++||+|||+|||||+|+|+ +.+++|+
T Consensus 89 ~La~ia~~lgL~~~i~~~~~~~~~---------------------~~~~~~~ilad~~EAliGAiylD~G~--~~a~~~i 145 (235)
T PRK12371 89 TCAAIADEIGLHDLIRTGSDVKKL---------------------TGKRLLNVRADVVEALIAAIYLDGGL--EAARPFI 145 (235)
T ss_pred HHHHHHHHCCcHHHhccCcchhhc---------------------CCcccchHHHHHHHHHHHHHHHcCCH--HHHHHHH
Confidence 999999999999999988643211 01235799999999999999999987 6899999
Q ss_pred hhccccccCc-ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1309 RPLLEPMITP-ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1309 ~~~l~~~~~~-~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
.+++.+.+.. .....|||++|+||||+.+...|.|+...+.|+ ..|+|+|+++|..++ +|.|.|||+|++.||+.
T Consensus 146 ~~~~~~~~~~~~~~~~d~Ks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~~~~~~-~g~G~sKK~Ae~~AA~~ 224 (235)
T PRK12371 146 QRYWQKRALETDAARRDAKTELQEWAHAQFGVTPVYRVDSRSGPDHDPRFTVEVEVKGFAPE-TGEGRSKRAAEQVAAEK 224 (235)
T ss_pred HHHHHHHHhccccccCCHHHHHHHHHHhcCCCCCeEEEEEeecCCCCCeEEEEEEECCEEEE-EeeeCCHHHHHHHHHHH
Confidence 9998876643 234579999999999988776677877665554 579999999999988 89999999999999999
Q ss_pred HHHHhhh
Q 000607 1385 VLKSLRA 1391 (1396)
Q Consensus 1385 AL~~L~~ 1391 (1396)
||++|+.
T Consensus 225 al~~~~~ 231 (235)
T PRK12371 225 MLEREGV 231 (235)
T ss_pred HHHHhhh
Confidence 9999875
No 7
>PRK12372 ribonuclease III; Reviewed
Probab=100.00 E-value=7.8e-42 Score=382.13 Aligned_cols=218 Identities=27% Similarity=0.381 Sum_probs=191.0
Q ss_pred HHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHH
Q 000607 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCY 1230 (1396)
Q Consensus 1151 ~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~L 1230 (1396)
+..||++|||+|+|+.||.+||||+||. ..+|||||||||+||+++|++|||.+||++++|+||.+|+.+|||.+|
T Consensus 3 l~~LEk~LGY~Fkn~~LL~eALTH~Sy~----~~~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~tL 78 (413)
T PRK12372 3 LSQLESRLRYEFRNAELLRQALTHRSHS----ATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (413)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccccc----cccHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHHH
Confidence 5679999999999999999999999986 248999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1231 ALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1231 a~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+.+|.++||.+||+++.++... .....+++|+|+|||+|||||+|+|+ +.++.|+.+
T Consensus 79 A~IA~~LgL~~~Lrlg~ge~~s---------------------gg~~~~kILADvfEALIGAIYLDsG~--e~a~~fV~~ 135 (413)
T PRK12372 79 YEIAQALNISEGLRLGEGELRS---------------------GGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKR 135 (413)
T ss_pred HHHHHHcCchHhhhcCcchhhc---------------------CCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHHHH
Confidence 9999999999999988765321 11346899999999999999999987 589999999
Q ss_pred ccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1311 LLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1311 ~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
++.|++.. .....|||+.||||||+++...+.|.+..+.|+ ..|+|.|+++|..+..+|.|.|||+|++.||+.
T Consensus 136 ll~p~l~~~~~~~~~~D~KS~LQE~~Q~~~~~~P~Y~lv~e~Gp~h~~~F~V~V~v~g~~~~g~G~G~SKKeAEQ~AAr~ 215 (413)
T PRK12372 136 LYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDVKVSGSGASRRAAEQAAAKK 215 (413)
T ss_pred HHHHHHhhcccccccCCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCceEEEEEEECCeEEEEEEEeCCHHHHHHHHHHH
Confidence 98887653 234579999999999999988888887665553 569999999996553389999999999999999
Q ss_pred HHHHhhhhCCC
Q 000607 1385 VLKSLRASFPG 1395 (1396)
Q Consensus 1385 AL~~L~~~~~~ 1395 (1396)
||++|+...|.
T Consensus 216 AL~kL~~~~~~ 226 (413)
T PRK12372 216 ALDEVMAAAPM 226 (413)
T ss_pred HHHHHhcccch
Confidence 99999976664
No 8
>PRK14718 ribonuclease III; Provisional
Probab=100.00 E-value=7.7e-42 Score=382.34 Aligned_cols=217 Identities=27% Similarity=0.388 Sum_probs=190.7
Q ss_pred HHHHHHHcCcccCCHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHH
Q 000607 1151 VRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCY 1230 (1396)
Q Consensus 1151 ~~~le~~lgy~f~~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~L 1230 (1396)
+..||++|||+|+|+.||.+||||+||. ..+|||||||||+||+++|++|||.+||++++|+||.+|+.+|||++|
T Consensus 3 l~~LEkrLGY~Fkn~~LL~eALTH~Sys----~e~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnetL 78 (467)
T PRK14718 3 LSQLESRLRYEFRNAELLRQALTHRSHS----ATHNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQSL 78 (467)
T ss_pred HHHHHHHhCCCcCCHHHHHHHHhccCcC----cccHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHHH
Confidence 5679999999999999999999999996 258999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1231 ALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1231 a~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+.+|.++||++||+.+.++... .....+++|+|+|||||||||+|+|+ +.+++|+.+
T Consensus 79 A~IAr~LGL~d~Lrlg~gE~~s---------------------gG~~~~sILADvFEALIGAIYLDsG~--e~a~~fI~~ 135 (467)
T PRK14718 79 YEIAQALNISDGLRLGEGELRS---------------------GGFRRPSILADAFEAIIGAVFLDGGF--EAAQGVIKR 135 (467)
T ss_pred HHHHHHcCchHHHhhCCccccc---------------------CCCCChhHHHHHHHHHHHHHHHccCH--HHHHHHHHH
Confidence 9999999999999988764321 11346899999999999999999997 689999999
Q ss_pred ccccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHH
Q 000607 1311 LLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKE 1384 (1396)
Q Consensus 1311 ~l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~ 1384 (1396)
+|.+++.. .....|||+.||||||++++..+.|.+..+.|+ ..|+|.|+++|..+.+.|.|.|||+|++.||+.
T Consensus 136 ll~p~i~~~d~~~~~kDyKS~LQE~~Qk~~~~~PeY~li~esGPdH~k~F~V~V~v~g~~~~G~G~G~SKKeAEQ~AAk~ 215 (467)
T PRK14718 136 LYVPILDHIDPRTLGKDAKTLLQEYLQGHKIALPTYTVVATHGAAHNQQFEVECTVPKLDIKVSGSGASRRAAEQAAAKK 215 (467)
T ss_pred HHHHHHhhhcccccccCHHHHHHHHHHhcCCCCCeeEEeeeecCCCCCeEEEEEEECCeeeEEEEEcCCHHHHHHHHHHH
Confidence 99887643 234579999999999999998888887766553 569999999996553389999999999999999
Q ss_pred HHHHhhhhCC
Q 000607 1385 VLKSLRASFP 1394 (1396)
Q Consensus 1385 AL~~L~~~~~ 1394 (1396)
||++|+...|
T Consensus 216 AL~kL~~~~~ 225 (467)
T PRK14718 216 ALDEVTAVAP 225 (467)
T ss_pred HHHHhcccch
Confidence 9999986544
No 9
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=9e-41 Score=360.57 Aligned_cols=332 Identities=24% Similarity=0.305 Sum_probs=260.9
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCe
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~ 95 (1396)
..|.+.|.++++.++.| ++|..+.||||||.++++.|. ..++..+...+++||+|||+|+.|.++.++.+ +|++
T Consensus 82 ~~PT~IQ~~aiP~~L~g~dvIglAeTGSGKT~afaLPIl--~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~iglr 159 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGRDVIGLAETGSGKTGAFALPIL--QRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGLR 159 (476)
T ss_pred CCCchhhhhhcchhhCCCcEEEEeccCCCchhhhHHHHH--HHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCeE
Confidence 45899999999999998 899999999999999998554 34456777789999999999999999999887 4899
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh-hcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR-LSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~-~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
+..+.|+++.. .+-....+.++|+|+||+.|++.+. -+.+++.++.++|+|||+++.+. .+...+..++...
T Consensus 160 ~~~lvGG~~m~----~q~~~L~kkPhilVaTPGrL~dhl~~Tkgf~le~lk~LVlDEADrlLd~-dF~~~ld~ILk~i-- 232 (476)
T KOG0330|consen 160 VAVLVGGMDMM----LQANQLSKKPHILVATPGRLWDHLENTKGFSLEQLKFLVLDEADRLLDM-DFEEELDYILKVI-- 232 (476)
T ss_pred EEEEecCchHH----HHHHHhhcCCCEEEeCcHHHHHHHHhccCccHHHhHHHhhchHHhhhhh-hhHHHHHHHHHhc--
Confidence 99999997654 3445667789999999999999998 56789999999999999999985 5666666665322
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....+.+++|||...+ +.+|+. .++. |..... .. .
T Consensus 233 ---p~erqt~LfsATMt~k------------v~kL~rasl~~-----------------p~~v~~--s~----------k 268 (476)
T KOG0330|consen 233 ---PRERQTFLFSATMTKK------------VRKLQRASLDN-----------------PVKVAV--SS----------K 268 (476)
T ss_pred ---CccceEEEEEeecchh------------hHHHHhhccCC-----------------CeEEec--cc----------h
Confidence 3446789999997552 334431 1111 111100 00 0
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
.+.+..+..
T Consensus 269 y~tv~~lkQ----------------------------------------------------------------------- 277 (476)
T KOG0330|consen 269 YQTVDHLKQ----------------------------------------------------------------------- 277 (476)
T ss_pred hcchHHhhh-----------------------------------------------------------------------
Confidence 000000000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
.++... ...|...|+.+|++. .+...||||++..++..++-+|+.+
T Consensus 278 -----------~ylfv~-----------------~k~K~~yLV~ll~e~---~g~s~iVF~~t~~tt~~la~~L~~l--- 323 (476)
T KOG0330|consen 278 -----------TYLFVP-----------------GKDKDTYLVYLLNEL---AGNSVIVFCNTCNTTRFLALLLRNL--- 323 (476)
T ss_pred -----------heEecc-----------------ccccchhHHHHHHhh---cCCcEEEEEeccchHHHHHHHHHhc---
Confidence 000000 034556788888874 4588999999999999999999985
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|+.+..+||. |++..|...+++|++|.++|||||+|+++|+|||.+++|||||.|.+..+||||.||++|.|
T Consensus 324 --g~~a~~LhGq------msq~~Rlg~l~~Fk~~~r~iLv~TDVaSRGLDip~Vd~VVNyDiP~~skDYIHRvGRtaRaG 395 (476)
T KOG0330|consen 324 --GFQAIPLHGQ------MSQSKRLGALNKFKAGARSILVCTDVASRGLDIPHVDVVVNYDIPTHSKDYIHRVGRTARAG 395 (476)
T ss_pred --Ccceecccch------hhHHHHHHHHHHHhccCCcEEEecchhcccCCCCCceEEEecCCCCcHHHHHHHcccccccC
Confidence 8999999998 89999999999999999999999999999999999999999999999999999999999998
Q ss_pred --CcEEEEEecCCcchHHHHHHHHHH
Q 000607 494 --SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 494 --s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
+..+.+|+..|.+..++|+..+..
T Consensus 396 rsG~~ItlVtqyDve~~qrIE~~~gk 421 (476)
T KOG0330|consen 396 RSGKAITLVTQYDVELVQRIEHALGK 421 (476)
T ss_pred CCcceEEEEehhhhHHHHHHHHHHhc
Confidence 689999998877777777766543
No 10
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=2.3e-38 Score=413.57 Aligned_cols=452 Identities=25% Similarity=0.309 Sum_probs=299.3
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---e
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL---K 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~---~ 95 (1396)
...+|+||.+++..++++|+||++|||+|||++|++++..+.. ..++++|||+||++|+.||.+.++++++. +
T Consensus 13 ~~~~r~yQ~~~~~~~l~~n~lv~~ptG~GKT~~a~~~i~~~l~----~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~~ 88 (773)
T PRK13766 13 TIEARLYQQLLAATALKKNTLVVLPTGLGKTAIALLVIAERLH----KKGGKVLILAPTKPLVEQHAEFFRKFLNIPEEK 88 (773)
T ss_pred cCCccHHHHHHHHHHhcCCeEEEcCCCccHHHHHHHHHHHHHH----hCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCce
Confidence 4569999999999999999999999999999999988876542 34578999999999999999999998765 7
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|+...+ .......+++|+|+||+++.+.+..+.+.+.++++||||||||+.+++.|..++..|..
T Consensus 89 v~~~~g~~~~~-----~r~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~----- 158 (773)
T PRK13766 89 IVVFTGEVSPE-----KRAELWEKAKVIVATPQVIENDLIAGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHE----- 158 (773)
T ss_pred EEEEeCCCCHH-----HHHHHHhCCCEEEECHHHHHHHHHcCCCChhhCcEEEEECCccccccccHHHHHHHHHh-----
Confidence 88888875432 23344557899999999999988888888999999999999999999999999988873
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEec--cChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC--ASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~--~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....|+++||||||.... ..+..+..+|+...... .....+..+...+....+ ....+.... .+
T Consensus 159 -~~~~~~il~lTaTP~~~~---------~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~---~v~l~~~~~-~i 224 (773)
T PRK13766 159 -DAKNPLVLGLTASPGSDE---------EKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWV---RVELPEELK-EI 224 (773)
T ss_pred -cCCCCEEEEEEcCCCCCH---------HHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEE---EeCCcHHHH-HH
Confidence 245789999999997532 35667777776554432 233455555554332222 223344332 24
Q ss_pred HHHHHHHHHHHHhhhhhhchh--------hHHHHHHHHHHHHHHHH--------HH------------HHHHhHHHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLN--------EAQAELIRKKVSKINST--------LL------------YCLSELGVWLAL 305 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~--------~~~~~~~~~~~~~~~~~--------~~------------~~~~~lg~~~a~ 305 (1396)
...+....+.....+...+.. ...+....+.+.+.+.. .. ..+...|.....
T Consensus 225 ~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~ 304 (773)
T PRK13766 225 RDLLNEALKDRLKKLKELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALR 304 (773)
T ss_pred HHHHHHHHHHHHHHHHHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHH
Confidence 444444433333333322211 01111111111111100 00 000000111000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHH-HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-c
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIK-KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY-R 383 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~-~ 383 (1396)
.....+...... .+ .......+.. .........+.. ....+||+..|.++|.+. .
T Consensus 305 ~y~~~l~~~~~~---~~-~~~~~~~l~~~~~~~~~~~~~~~-------------------~~~~~pK~~~L~~il~~~~~ 361 (773)
T PRK13766 305 RYLERLREEARS---SG-GSKASKRLVEDPRFRKAVRKAKE-------------------LDIEHPKLEKLREIVKEQLG 361 (773)
T ss_pred HHHHHHHhhccc---cC-CcHHHHHHHhCHHHHHHHHHHHh-------------------cccCChHHHHHHHHHHHHHh
Confidence 000000000000 00 0000000000 000001000100 112379999999999884 3
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCC--cCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~--~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
..++.++||||+++.++..|.+.|.. .++++..++|..+. ..+|++.+|.+++++|++|++++||||++++||
T Consensus 362 ~~~~~kvlIF~~~~~t~~~L~~~L~~-----~~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~g~~~vLvaT~~~~eG 436 (773)
T PRK13766 362 KNPDSRIIVFTQYRDTAEKIVDLLEK-----EGIKAVRFVGQASKDGDKGMSQKEQIEILDKFRAGEFNVLVSTSVAEEG 436 (773)
T ss_pred cCCCCeEEEEeCcHHHHHHHHHHHHh-----CCCceEEEEccccccccCCCCHHHHHHHHHHHHcCCCCEEEECChhhcC
Confidence 35788999999999999999999975 47888899996432 246899999999999999999999999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHHHHHHh
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMRKEVLS 527 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~~~~~~ 527 (1396)
+|+|+|++||+||+|+|+..|+||+||+||.| +++++|+..+..+. +.+......|+.|.+...+
T Consensus 437 ldi~~~~~VI~yd~~~s~~r~iQR~GR~gR~~~~~v~~l~~~~t~ee-~~y~~~~~ke~~~~~~l~~ 502 (773)
T PRK13766 437 LDIPSVDLVIFYEPVPSEIRSIQRKGRTGRQEEGRVVVLIAKGTRDE-AYYWSSRRKEKKMKEELKN 502 (773)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhcccCcCCCCEEEEEEeCCChHH-HHHHHhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999976 57788887665433 3344444566677655433
No 11
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.5e-39 Score=375.88 Aligned_cols=342 Identities=20% Similarity=0.227 Sum_probs=256.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHH-HHHHHHH---HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIM-LLRSYAY---LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iail-li~~l~~---~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
...|.++|...+..++.| |+|..+.||||||+.+++ +|.++.. ....+.++++|+|+|||+|+.|..+++..+.
T Consensus 111 ~~~PtpIQaq~wp~~l~GrD~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~~~ 190 (519)
T KOG0331|consen 111 FEKPTPIQAQGWPIALSGRDLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREFGK 190 (519)
T ss_pred CCCCchhhhcccceeccCCceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHHcC
Confidence 445999999999999998 899999999999999998 4444432 1123468899999999999999999999886
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++..+++|+.... .+......+.+|+|+||++|.++++.+.+.++++.++|+|||+++.+.. +..-++....
T Consensus 191 ~~~~~~~cvyGG~~~~----~Q~~~l~~gvdiviaTPGRl~d~le~g~~~l~~v~ylVLDEADrMldmG-Fe~qI~~Il~ 265 (519)
T KOG0331|consen 191 SLRLRSTCVYGGAPKG----PQLRDLERGVDVVIATPGRLIDLLEEGSLNLSRVTYLVLDEADRMLDMG-FEPQIRKILS 265 (519)
T ss_pred CCCccEEEEeCCCCcc----HHHHHHhcCCcEEEeCChHHHHHHHcCCccccceeEEEeccHHhhhccc-cHHHHHHHHH
Confidence 46688899985443 4556666689999999999999999999999999999999999999753 3333333332
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
. ......+.+..|||=.. .+..|...+ ...|....+-... +
T Consensus 266 ~----i~~~~rQtlm~saTwp~------------~v~~lA~~f----------------l~~~~~i~ig~~~-----~-- 306 (519)
T KOG0331|consen 266 Q----IPRPDRQTLMFSATWPK------------EVRQLAEDF----------------LNNPIQINVGNKK-----E-- 306 (519)
T ss_pred h----cCCCcccEEEEeeeccH------------HHHHHHHHH----------------hcCceEEEecchh-----h--
Confidence 2 11222258888988532 122222111 1111111110000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
+
T Consensus 307 ------~------------------------------------------------------------------------- 307 (519)
T KOG0331|consen 307 ------L------------------------------------------------------------------------- 307 (519)
T ss_pred ------h-------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.+... +.+.+.......|...|.++|..+......|+||||+++.+++.|...|+.
T Consensus 308 -------~a~~~----------------i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~- 363 (519)
T KOG0331|consen 308 -------KANHN----------------IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRR- 363 (519)
T ss_pred -------hhhcc----------------hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHh-
Confidence 00000 000011111267888899999987666788999999999999999999996
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++++..+||+. ++.+|..+|+.||+|+.+|||||+|+++|||||++++||+||+|.+..+|+||.||+|
T Consensus 364 ----~~~~a~~iHGd~------sQ~eR~~~L~~FreG~~~vLVATdVAaRGLDi~dV~lVInydfP~~vEdYVHRiGRTG 433 (519)
T KOG0331|consen 364 ----KGWPAVAIHGDK------SQSERDWVLKGFREGKSPVLVATDVAARGLDVPDVDLVINYDFPNNVEDYVHRIGRTG 433 (519)
T ss_pred ----cCcceeeecccc------cHHHHHHHHHhcccCCcceEEEcccccccCCCccccEEEeCCCCCCHHHHHhhcCccc
Confidence 379999999995 9999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHHHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
|+| +..+.|++..+......+.+.++.
T Consensus 434 Ra~~~G~A~tfft~~~~~~a~~l~~~l~e 462 (519)
T KOG0331|consen 434 RAGKKGTAITFFTSDNAKLARELIKVLRE 462 (519)
T ss_pred cCCCCceEEEEEeHHHHHHHHHHHHHHHH
Confidence 976 577888887766666666555533
No 12
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=3.2e-38 Score=390.20 Aligned_cols=337 Identities=20% Similarity=0.196 Sum_probs=244.0
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHHH--hcCCCCcEEEEEeCCcccHHHHHHHHHHhc--
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAYL--LRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~~--~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+ .++... .....+.++||||||++||.|+.+.++++.
T Consensus 150 ~~~pt~iQ~~aip~~l~G~dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~~~ 229 (545)
T PTZ00110 150 FTEPTPIQVQGWPIALSGRDMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFGAS 229 (545)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHhcc
Confidence 345999999999999997 89999999999999998743 333221 112346789999999999999999998865
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++++..++|+.... .++.....+++|+|+||++|.+++.++...++++++||+||||++.+.. |...+......
T Consensus 230 ~~i~~~~~~gg~~~~----~q~~~l~~~~~IlVaTPgrL~d~l~~~~~~l~~v~~lViDEAd~mld~g-f~~~i~~il~~ 304 (545)
T PTZ00110 230 SKIRNTVAYGGVPKR----GQIYALRRGVEILIACPGRLIDFLESNVTNLRRVTYLVLDEADRMLDMG-FEPQIRKIVSQ 304 (545)
T ss_pred cCccEEEEeCCCCHH----HHHHHHHcCCCEEEECHHHHHHHHHcCCCChhhCcEEEeehHHhhhhcc-hHHHHHHHHHh
Confidence 57788888875432 3445555689999999999999999988899999999999999998753 33333333321
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.....+++++|||... .+..+...+- ..... +..........
T Consensus 305 -----~~~~~q~l~~SAT~p~------------~v~~l~~~l~~~~~v~------------------i~vg~~~l~~~-- 347 (545)
T PTZ00110 305 -----IRPDRQTLMWSATWPK------------EVQSLARDLCKEEPVH------------------VNVGSLDLTAC-- 347 (545)
T ss_pred -----CCCCCeEEEEEeCCCH------------HHHHHHHHHhccCCEE------------------EEECCCccccC--
Confidence 1234689999999743 1222222211 00000 00000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
.
T Consensus 348 ~------------------------------------------------------------------------------- 348 (545)
T PTZ00110 348 H------------------------------------------------------------------------------- 348 (545)
T ss_pred C-------------------------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.+...+.......|...|.++|.... ..+.++||||+++.+++.|++.|..
T Consensus 349 ---------------------------~i~q~~~~~~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~- 399 (545)
T PTZ00110 349 ---------------------------NIKQEVFVVEEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRL- 399 (545)
T ss_pred ---------------------------CeeEEEEEEechhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHH-
Confidence 00000000001345556666666542 2567999999999999999999985
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||||+|++||+||+|.+..+|+||+||+|
T Consensus 400 ----~g~~~~~ihg~------~~~~eR~~il~~F~~G~~~ILVaTdv~~rGIDi~~v~~VI~~d~P~s~~~yvqRiGRtG 469 (545)
T PTZ00110 400 ----DGWPALCIHGD------KKQEERTWVLNEFKTGKSPIMIATDVASRGLDVKDVKYVINFDFPNQIEDYVHRIGRTG 469 (545)
T ss_pred ----cCCcEEEEECC------CcHHHHHHHHHHHhcCCCcEEEEcchhhcCCCcccCCEEEEeCCCCCHHHHHHHhcccc
Confidence 47889999997 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
|.| +.+++|++.++......+.+.+
T Consensus 470 R~G~~G~ai~~~~~~~~~~~~~l~~~l 496 (545)
T PTZ00110 470 RAGAKGASYTFLTPDKYRLARDLVKVL 496 (545)
T ss_pred cCCCCceEEEEECcchHHHHHHHHHHH
Confidence 987 5788888876555444444443
No 13
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=5.1e-38 Score=387.74 Aligned_cols=334 Identities=22% Similarity=0.262 Sum_probs=239.9
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
...|+++|.++++.++.+ |+|+++|||||||+++++.+. ++.... ....+.+++||+||++|+.|+.+.++.+.
T Consensus 141 ~~~ptpiQ~~aip~il~g~dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~l~ 220 (518)
T PLN00206 141 YEFPTPIQMQAIPAALSGRSLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKVLG 220 (518)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHHHh
Confidence 456999999999999997 899999999999999998543 332211 12256789999999999999888877653
Q ss_pred ---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 ---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 ---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++..+.|+.... ........+++|+|+||++|.+++..+.+.++++++||+||||++.+.+-...++ ...
T Consensus 221 ~~~~~~~~~~~gG~~~~----~q~~~l~~~~~IiV~TPgrL~~~l~~~~~~l~~v~~lViDEad~ml~~gf~~~i~-~i~ 295 (518)
T PLN00206 221 KGLPFKTALVVGGDAMP----QQLYRIQQGVELIVGTPGRLIDLLSKHDIELDNVSVLVLDEVDCMLERGFRDQVM-QIF 295 (518)
T ss_pred CCCCceEEEEECCcchH----HHHHHhcCCCCEEEECHHHHHHHHHcCCccchheeEEEeecHHHHhhcchHHHHH-HHH
Confidence 56777777764432 2233344578999999999999999888899999999999999998764333333 232
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
.. ...++++++|||... .+..+...+......+ .......+...
T Consensus 296 ~~------l~~~q~l~~SATl~~------------~v~~l~~~~~~~~~~i------------------~~~~~~~~~~~ 339 (518)
T PLN00206 296 QA------LSQPQVLLFSATVSP------------EVEKFASSLAKDIILI------------------SIGNPNRPNKA 339 (518)
T ss_pred Hh------CCCCcEEEEEeeCCH------------HHHHHHHHhCCCCEEE------------------EeCCCCCCCcc
Confidence 11 134789999999854 2333333322211110 00000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 340 -------------------------------------------------------------------------------- 339 (518)
T PLN00206 340 -------------------------------------------------------------------------------- 339 (518)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
+...........|...|.++|.... ....++||||+++..++.+++.|..
T Consensus 340 -----------------------------v~q~~~~~~~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~ 389 (518)
T PLN00206 340 -----------------------------VKQLAIWVETKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITV 389 (518)
T ss_pred -----------------------------eeEEEEeccchhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhh
Confidence 0000000000234455666665432 2245899999999999999999975
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
. .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||+|||
T Consensus 390 ~----~g~~~~~~Hg~------~~~~eR~~il~~Fr~G~~~ILVaTdvl~rGiDip~v~~VI~~d~P~s~~~yihRiGRa 459 (518)
T PLN00206 390 V----TGLKALSIHGE------KSMKERREVMKSFLVGEVPVIVATGVLGRGVDLLRVRQVIIFDMPNTIKEYIHQIGRA 459 (518)
T ss_pred c----cCcceEEeeCC------CCHHHHHHHHHHHHCCCCCEEEEecHhhccCCcccCCEEEEeCCCCCHHHHHHhcccc
Confidence 3 47889999997 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRLEN 513 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i~~ 513 (1396)
||.| |.+++|++.++......+.+
T Consensus 460 GR~g~~G~ai~f~~~~~~~~~~~l~~ 485 (518)
T PLN00206 460 SRMGEKGTAIVFVNEEDRNLFPELVA 485 (518)
T ss_pred ccCCCCeEEEEEEchhHHHHHHHHHH
Confidence 9987 57888887665444444433
No 14
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=2.2e-38 Score=384.63 Aligned_cols=336 Identities=21% Similarity=0.223 Sum_probs=241.2
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-----CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-----KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-----~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.....|.++|.++++.++++ |+|+.+|||||||+++++.+........ ...+.+++|||||++|+.|+++.++.
T Consensus 26 ~g~~~pt~iQ~~aip~il~g~dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 26 KGFHNCTPIQALALPLTLAGRDVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCCCCHHHHHHHHHHhCCCcEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 34456899999999999998 8999999999999999875543222111 12356899999999999999887775
Q ss_pred h---cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 91 H---TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 91 ~---~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
+ .++++..++|+.+.+ ..+.....+++|+|+||++|.+.+..+.+.+++++++|+||||++.+.. |...+..
T Consensus 106 l~~~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~TP~~l~~~l~~~~~~l~~v~~lViDEad~l~~~~-f~~~i~~ 180 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYD----KQLKVLESGVDILIGTTGRLIDYAKQNHINLGAIQVVVLDEADRMFDLG-FIKDIRW 180 (423)
T ss_pred HhccCCceEEEEECCCCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcccccccEEEEecHHHHhhcc-cHHHHHH
Confidence 4 478999999975543 2333444578999999999999999999999999999999999998753 3344444
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.+... ........+++|||+... +..+. ..+....+. . .......
T Consensus 181 i~~~~---~~~~~~~~~l~SAT~~~~------------~~~~~~~~~~~p~~i-----------------~--v~~~~~~ 226 (423)
T PRK04837 181 LFRRM---PPANQRLNMLFSATLSYR------------VRELAFEHMNNPEYV-----------------E--VEPEQKT 226 (423)
T ss_pred HHHhC---CCccceeEEEEeccCCHH------------HHHHHHHHCCCCEEE-----------------E--EcCCCcC
Confidence 44221 111223468999997431 21221 112111110 0 0000000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 227 ~~------------------------------------------------------------------------------ 228 (423)
T PRK04837 227 GH------------------------------------------------------------------------------ 228 (423)
T ss_pred CC------------------------------------------------------------------------------
Confidence 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+...........|...|.+++... ...++||||+++..++.++..
T Consensus 229 -------------------------------~i~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~ 274 (423)
T PRK04837 229 -------------------------------RIKEELFYPSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGH 274 (423)
T ss_pred -------------------------------ceeEEEEeCCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHH
Confidence 0000000000134556666666542 457899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.. .++++..+||+ |++++|.+++++|++|+++|||||+++++|||+|+|++||+||+|.+..+|+||+
T Consensus 275 L~~-----~g~~v~~lhg~------~~~~~R~~~l~~F~~g~~~vLVaTdv~~rGiDip~v~~VI~~d~P~s~~~yiqR~ 343 (423)
T PRK04837 275 LAA-----DGHRVGLLTGD------VAQKKRLRILEEFTRGDLDILVATDVAARGLHIPAVTHVFNYDLPDDCEDYVHRI 343 (423)
T ss_pred HHh-----CCCcEEEecCC------CChhHHHHHHHHHHcCCCcEEEEechhhcCCCccccCEEEEeCCCCchhheEecc
Confidence 986 48899999997 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecCCcchHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGDSTTQSRLENY 514 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~~~~~~~i~~~ 514 (1396)
|||||.| +.++.|+.+++......++++
T Consensus 344 GR~gR~G~~G~ai~~~~~~~~~~~~~i~~~ 373 (423)
T PRK04837 344 GRTGRAGASGHSISLACEEYALNLPAIETY 373 (423)
T ss_pred ccccCCCCCeeEEEEeCHHHHHHHHHHHHH
Confidence 9999998 578888876544444444433
No 15
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=1e-37 Score=380.91 Aligned_cols=331 Identities=19% Similarity=0.195 Sum_probs=236.6
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc----CCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR----KPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
....|+++|.++++.++++ |+|+.+|||||||+++++.+.+...... .....++||||||++|+.|+.+.++.+.
T Consensus 20 g~~~pt~iQ~~ai~~il~g~dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~~ 99 (456)
T PRK10590 20 GYREPTPIQQQAIPAVLEGRDLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDYS 99 (456)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHHh
Confidence 3456999999999999997 8999999999999999986554332111 1123579999999999999999998754
Q ss_pred ---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 ---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 ---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++..++|+.+.+ ..+......++|+|+||+.|++.+.+..+.++++++||+||||++.+..-+..+ ...+
T Consensus 100 ~~~~~~~~~~~gg~~~~----~~~~~l~~~~~IiV~TP~rL~~~~~~~~~~l~~v~~lViDEah~ll~~~~~~~i-~~il 174 (456)
T PRK10590 100 KYLNIRSLVVFGGVSIN----PQMMKLRGGVDVLVATPGRLLDLEHQNAVKLDQVEILVLDEADRMLDMGFIHDI-RRVL 174 (456)
T ss_pred ccCCCEEEEEECCcCHH----HHHHHHcCCCcEEEEChHHHHHHHHcCCcccccceEEEeecHHHHhccccHHHH-HHHH
Confidence 67888888886543 234445567899999999999999888889999999999999999875433332 2222
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCcceeEeccCCCCchh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHA 248 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~ 248 (1396)
.. .....+++++|||+.. .+..+...+ ..... ..+.... .....
T Consensus 175 ~~-----l~~~~q~l~~SAT~~~------------~~~~l~~~~~~~~~~-----------------i~~~~~~-~~~~~ 219 (456)
T PRK10590 175 AK-----LPAKRQNLLFSATFSD------------DIKALAEKLLHNPLE-----------------IEVARRN-TASEQ 219 (456)
T ss_pred Hh-----CCccCeEEEEeCCCcH------------HHHHHHHHHcCCCeE-----------------EEEeccc-ccccc
Confidence 11 1234578999999843 222332222 11110 0000000 00000
Q ss_pred hHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccch
Q 000607 249 LYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFG 328 (1396)
Q Consensus 249 ~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 328 (1396)
+..
T Consensus 220 i~~----------------------------------------------------------------------------- 222 (456)
T PRK10590 220 VTQ----------------------------------------------------------------------------- 222 (456)
T ss_pred eeE-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHH
Q 000607 329 ETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLS 408 (1396)
Q Consensus 329 ~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~ 408 (1396)
.. . ......|...|..++.. ....++||||+++..+..++..|.
T Consensus 223 -----------------~~------~----------~~~~~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~ 266 (456)
T PRK10590 223 -----------------HV------H----------FVDKKRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLN 266 (456)
T ss_pred -----------------EE------E----------EcCHHHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHH
Confidence 00 0 00001222233333322 345689999999999999999998
Q ss_pred hhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhc
Q 000607 409 ELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGR 488 (1396)
Q Consensus 409 ~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GR 488 (1396)
. .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.++.+|+||.||
T Consensus 267 ~-----~g~~~~~lhg~------~~~~~R~~~l~~F~~g~~~iLVaTdv~~rGiDip~v~~VI~~~~P~~~~~yvqR~GR 335 (456)
T PRK10590 267 K-----DGIRSAAIHGN------KSQGARTRALADFKSGDIRVLVATDIAARGLDIEELPHVVNYELPNVPEDYVHRIGR 335 (456)
T ss_pred H-----CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEccHHhcCCCcccCCEEEEeCCCCCHHHhhhhccc
Confidence 6 47899999997 699999999999999999999999999999999999999999999999999999999
Q ss_pred ccCCC--CcEEEEEecCCcchHHHHH
Q 000607 489 ARMQN--SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 489 A~R~g--s~~i~lv~~~~~~~~~~i~ 512 (1396)
|||.| +.+++++..++....+.++
T Consensus 336 aGR~g~~G~ai~l~~~~d~~~~~~ie 361 (456)
T PRK10590 336 TGRAAATGEALSLVCVDEHKLLRDIE 361 (456)
T ss_pred cccCCCCeeEEEEecHHHHHHHHHHH
Confidence 99987 5777777655433333333
No 16
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=3.4e-37 Score=378.44 Aligned_cols=320 Identities=19% Similarity=0.216 Sum_probs=237.8
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----C
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----D 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~ 93 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+..... ......+++|||||++|+.|+++.++.+. +
T Consensus 24 ~~~~t~iQ~~ai~~~l~g~dvi~~a~TGsGKT~a~~lpil~~l~--~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 24 YTEMTPIQAQSLPAILAGKDVIAQAKTGSGKTAAFGLGLLQKLD--VKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCCHHHHHHHHHHhcCCCEEEECCCCCcHHHHHHHHHHHHhh--hccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 445899999999999998 8999999999999998886654332 12234579999999999999999998753 6
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..++|+.+.+ ..+.....+++|+|+||++|.+.+.++.+.++++++||+||||++.+.. |...+......
T Consensus 102 ~~v~~~~Gg~~~~----~~~~~l~~~~~IvV~Tp~rl~~~l~~~~~~l~~l~~lViDEad~~l~~g-~~~~l~~i~~~-- 174 (460)
T PRK11776 102 IKVLTLCGGVPMG----PQIDSLEHGAHIIVGTPGRILDHLRKGTLDLDALNTLVLDEADRMLDMG-FQDAIDAIIRQ-- 174 (460)
T ss_pred cEEEEEECCCChH----HHHHHhcCCCCEEEEChHHHHHHHHcCCccHHHCCEEEEECHHHHhCcC-cHHHHHHHHHh--
Confidence 8899999986553 2333444578999999999999999888889999999999999998653 33333333321
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....+++++|||+.. .+..+...+.. .|....+ ........+
T Consensus 175 ---~~~~~q~ll~SAT~~~------------~~~~l~~~~~~----------------~~~~i~~--~~~~~~~~i---- 217 (460)
T PRK11776 175 ---APARRQTLLFSATYPE------------GIAAISQRFQR----------------DPVEVKV--ESTHDLPAI---- 217 (460)
T ss_pred ---CCcccEEEEEEecCcH------------HHHHHHHHhcC----------------CCEEEEE--CcCCCCCCe----
Confidence 2334679999999853 23333222211 1110000 000000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 218 -------------------------------------------------------------------------------- 217 (460)
T PRK11776 218 -------------------------------------------------------------------------------- 217 (460)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
.+.........|...|.++|... ...++||||+++..+..+++.|..
T Consensus 218 --------------------------~~~~~~~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~---- 264 (460)
T PRK11776 218 --------------------------EQRFYEVSPDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNA---- 264 (460)
T ss_pred --------------------------eEEEEEeCcHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHh----
Confidence 00000000033666666766553 456899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++.+..+||+ |++.+|++++++|++|++++||||+++++|||+|++++||+||.|.+..+|+||.|||||.|
T Consensus 265 -~~~~v~~~hg~------~~~~eR~~~l~~F~~g~~~vLVaTdv~~rGiDi~~v~~VI~~d~p~~~~~yiqR~GRtGR~g 337 (460)
T PRK11776 265 -QGFSALALHGD------LEQRDRDQVLVRFANRSCSVLVATDVAARGLDIKALEAVINYELARDPEVHVHRIGRTGRAG 337 (460)
T ss_pred -CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCcEEEEecccccccchhcCCeEEEecCCCCHhHhhhhcccccCCC
Confidence 37899999997 69999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++.++..++
T Consensus 338 ~~G~ai~l~~~~e 350 (460)
T PRK11776 338 SKGLALSLVAPEE 350 (460)
T ss_pred CcceEEEEEchhH
Confidence 46777776553
No 17
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=3.7e-37 Score=375.85 Aligned_cols=335 Identities=21% Similarity=0.252 Sum_probs=240.8
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHh-cCCCCcEEEEEeCCcccHHHHHHHHHHh--
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLL-RKPSPFVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~-~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
.....|+++|.++++.++++ |+|+++|||+|||+++++.+.. +.... ...+..+++||+||++|+.|+++.++.+
T Consensus 19 ~g~~~p~~iQ~~ai~~~~~g~d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 19 KGYTRPTAIQAEAIPPALDGRDVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 33456999999999999998 8999999999999999885543 32211 1223568999999999999988877754
Q ss_pred -cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 92 -TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 92 -~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++++..++|+.... ........+++|+|+||++|++.+.++.+.+.++++|||||||++.+. .+...+.....
T Consensus 99 ~~~~~v~~~~gg~~~~----~~~~~l~~~~~IlV~Tp~rl~~~~~~~~~~~~~v~~lViDEah~~l~~-~~~~~~~~i~~ 173 (434)
T PRK11192 99 HTHLDIATITGGVAYM----NHAEVFSENQDIVVATPGRLLQYIKEENFDCRAVETLILDEADRMLDM-GFAQDIETIAA 173 (434)
T ss_pred cCCcEEEEEECCCCHH----HHHHHhcCCCCEEEEChHHHHHHHHcCCcCcccCCEEEEECHHHHhCC-CcHHHHHHHHH
Confidence 578999999986543 122233447899999999999999988888999999999999999864 34444444432
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
. .....+++++|||+... .+..+...+......+ .........
T Consensus 174 ~-----~~~~~q~~~~SAT~~~~-----------~~~~~~~~~~~~~~~i------------------~~~~~~~~~--- 216 (434)
T PRK11192 174 E-----TRWRKQTLLFSATLEGD-----------AVQDFAERLLNDPVEV------------------EAEPSRRER--- 216 (434)
T ss_pred h-----CccccEEEEEEeecCHH-----------HHHHHHHHHccCCEEE------------------EecCCcccc---
Confidence 1 23456899999998431 1222222221100000 000000000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
. .
T Consensus 217 ~--------------------~---------------------------------------------------------- 218 (434)
T PRK11192 217 K--------------------K---------------------------------------------------------- 218 (434)
T ss_pred c--------------------C----------------------------------------------------------
Confidence 0 0
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
+... .. .......|...|.+++.. ....++||||+++..+..++..|+.
T Consensus 219 ------------i~~~-------~~--------~~~~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~- 267 (434)
T PRK11192 219 ------------IHQW-------YY--------RADDLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRK- 267 (434)
T ss_pred ------------ceEE-------EE--------EeCCHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHh-
Confidence 0000 00 000013455556665543 3467999999999999999999986
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.++++..+||. |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+...|+||.||+|
T Consensus 268 ----~~~~~~~l~g~------~~~~~R~~~l~~f~~G~~~vLVaTd~~~~GiDip~v~~VI~~d~p~s~~~yiqr~GR~g 337 (434)
T PRK11192 268 ----AGINCCYLEGE------MVQAKRNEAIKRLTDGRVNVLVATDVAARGIDIDDVSHVINFDMPRSADTYLHRIGRTG 337 (434)
T ss_pred ----CCCCEEEecCC------CCHHHHHHHHHHHhCCCCcEEEEccccccCccCCCCCEEEEECCCCCHHHHhhcccccc
Confidence 37899999997 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecCCcchHHHHH
Q 000607 491 MQN--SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 491 R~g--s~~i~lv~~~~~~~~~~i~ 512 (1396)
|.| +.++++++..|......++
T Consensus 338 R~g~~g~ai~l~~~~d~~~~~~i~ 361 (434)
T PRK11192 338 RAGRKGTAISLVEAHDHLLLGKIE 361 (434)
T ss_pred cCCCCceEEEEecHHHHHHHHHHH
Confidence 988 4678887755444444443
No 18
>PRK00102 rnc ribonuclease III; Reviewed
Probab=100.00 E-value=8.7e-38 Score=346.15 Aligned_cols=218 Identities=33% Similarity=0.486 Sum_probs=190.9
Q ss_pred hHHHHHHHcCcccCCHHHHHHHhccCCCCC-CCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCch
Q 000607 1150 NVRHLESLLNYSFRDPSLLVEALTHGSYML-PEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNND 1228 (1396)
Q Consensus 1150 ~~~~le~~lgy~f~~~~ll~~Alth~S~~~-~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~ 1228 (1396)
++..||++|||+|+|+.|+.+||||||+.. .....+|||||||||+||++++++|||.+||+.++|.|+.+|+.+|||.
T Consensus 4 ~~~~l~~~lg~~f~~~~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lvsn~ 83 (229)
T PRK00102 4 DLEELQKKLGYTFKDPELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALVREE 83 (229)
T ss_pred hHHHHHHHhCCCCCCHHHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHH
Confidence 578899999999999999999999999963 2356799999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHh
Q 000607 1229 CYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSI 1308 (1396)
Q Consensus 1229 ~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~ 1308 (1396)
+|+.+|.++||+++|++++..... .....+|+++|+|||+|||||+|+|. +.+++|+
T Consensus 84 ~la~~a~~lgl~~~i~~~~~~~~~---------------------~~~~~~k~~ad~~EA~iGAiyld~g~--~~~~~~i 140 (229)
T PRK00102 84 SLAEIARELGLGEYLLLGKGEEKS---------------------GGRRRPSILADAFEALIGAIYLDQGL--EAARKFI 140 (229)
T ss_pred HHHHHHHHCCcHHHHccCcHHHHc---------------------CCCCCccHHHHHHHHHHHHHHHhCCH--HHHHHHH
Confidence 999999999999999988753211 01246899999999999999999986 6899999
Q ss_pred hhccccccCcc---cccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHH
Q 000607 1309 RPLLEPMITPE---TMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVAC 1382 (1396)
Q Consensus 1309 ~~~l~~~~~~~---~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA 1382 (1396)
.+++.|++... ....||++.|+++|++.++..+.|++....| .+.|+|+|+++|..++ +|.|.|+|+||+.||
T Consensus 141 ~~~~~~~l~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~skk~Ae~~AA 219 (229)
T PRK00102 141 LRLFEPRIEEIDLGDLVKDYKTRLQELLQGRGLPLPEYELVKEEGPAHDKEFTVEVTVNGKELG-EGTGSSKKEAEQAAA 219 (229)
T ss_pred HHHHHHHHHhhccccccCCHHHHHHHHHHHcCCCCCceEEeeccCCCCCceEEEEEEECCEEEE-EeeeCCHHHHHHHHH
Confidence 99888876542 3458999999999999888777777655544 3579999999999988 899999999999999
Q ss_pred HHHHHHhhh
Q 000607 1383 KEVLKSLRA 1391 (1396)
Q Consensus 1383 ~~AL~~L~~ 1391 (1396)
+.||+.|+.
T Consensus 220 ~~Al~~l~~ 228 (229)
T PRK00102 220 KQALKKLKE 228 (229)
T ss_pred HHHHHHHhh
Confidence 999999975
No 19
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=3.1e-36 Score=370.64 Aligned_cols=324 Identities=19% Similarity=0.214 Sum_probs=230.1
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHhc----CCCCcEEEEEeCCcccHHHHHHHHHHh--
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLLR----KPSPFVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
..|+++|.++++.+++| |+|+++|||||||+++++.+.. +..... ..+..++|||+||++|+.|+.+.++.+
T Consensus 108 ~~~~~iQ~~ai~~~~~G~dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~l~~ 187 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGHDAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAALTK 187 (475)
T ss_pred CCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHHhhc
Confidence 44899999999999998 8999999999999999885433 322100 012468999999999999999988875
Q ss_pred -cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 92 -TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 92 -~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
.++++..++|+...+ .+........++|+|+||++|++.+.++...++++++||+||||++.+.+- ...+.....
T Consensus 188 ~~~~~v~~~~gg~~~~---~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~~~~l~~l~~lViDEah~l~~~~~-~~~l~~i~~ 263 (475)
T PRK01297 188 YTGLNVMTFVGGMDFD---KQLKQLEARFCDILVATPGRLLDFNQRGEVHLDMVEVMVLDEADRMLDMGF-IPQVRQIIR 263 (475)
T ss_pred cCCCEEEEEEccCChH---HHHHHHhCCCCCEEEECHHHHHHHHHcCCcccccCceEEechHHHHHhccc-HHHHHHHHH
Confidence 478888899875332 122222234689999999999999988888899999999999999987532 222222221
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
.. .....++++++|||.... +..+. .++...... . ..........
T Consensus 264 ~~---~~~~~~q~i~~SAT~~~~------------~~~~~~~~~~~~~~v-----------------~--~~~~~~~~~~ 309 (475)
T PRK01297 264 QT---PRKEERQTLLFSATFTDD------------VMNLAKQWTTDPAIV-----------------E--IEPENVASDT 309 (475)
T ss_pred hC---CCCCCceEEEEEeecCHH------------HHHHHHHhccCCEEE-----------------E--eccCcCCCCc
Confidence 11 112345899999997431 11221 111111100 0 0000000000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 310 -------------------------------------------------------------------------------- 309 (475)
T PRK01297 310 -------------------------------------------------------------------------------- 309 (475)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
..........+.|...|.+++.. ....++||||+++.+++.++..|..
T Consensus 310 -----------------------------~~~~~~~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~ 357 (475)
T PRK01297 310 -----------------------------VEQHVYAVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVK 357 (475)
T ss_pred -----------------------------ccEEEEEecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHH
Confidence 00000000013345555555544 2456899999999999999999986
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.++.+..++|. |++.+|.+++++|++|++++||||+++++|||||++++||+||.|.|..+|+||.|||
T Consensus 358 -----~~~~~~~~~g~------~~~~~R~~~~~~Fr~G~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~s~~~y~Qr~GRa 426 (475)
T PRK01297 358 -----DGINAAQLSGD------VPQHKRIKTLEGFREGKIRVLVATDVAGRGIHIDGISHVINFTLPEDPDDYVHRIGRT 426 (475)
T ss_pred -----cCCCEEEEECC------CCHHHHHHHHHHHhCCCCcEEEEccccccCCcccCCCEEEEeCCCCCHHHHHHhhCcc
Confidence 37888899987 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCC
Q 000607 490 RMQN--SDYLLMVKSGD 504 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~ 504 (1396)
||.| |..++++..+|
T Consensus 427 GR~g~~g~~i~~~~~~d 443 (475)
T PRK01297 427 GRAGASGVSISFAGEDD 443 (475)
T ss_pred CCCCCCceEEEEecHHH
Confidence 9988 46777776543
No 20
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-36 Score=377.03 Aligned_cols=324 Identities=19% Similarity=0.232 Sum_probs=232.8
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH-HHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS-YAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~-l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
....|+++|.++++.++++ |+|+.+|||||||+++++.+.+ +.... ......++|||+||++|+.|+++.++++
T Consensus 28 g~~~ptpiQ~~~ip~~l~G~Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~l 107 (572)
T PRK04537 28 GFTRCTPIQALTLPVALPGGDVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVKF 107 (572)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 3456999999999999998 8999999999999999885543 22110 1113468999999999999999998876
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
. ++++..++|+...+ ........+++|+|+||+.|++.+.+. .+.+..+++|||||||++.+.. +...+..
T Consensus 108 ~~~~~i~v~~l~Gg~~~~----~q~~~l~~~~dIiV~TP~rL~~~l~~~~~~~l~~v~~lViDEAh~lld~g-f~~~i~~ 182 (572)
T PRK04537 108 GADLGLRFALVYGGVDYD----KQRELLQQGVDVIIATPGRLIDYVKQHKVVSLHACEICVLDEADRMFDLG-FIKDIRF 182 (572)
T ss_pred hccCCceEEEEECCCCHH----HHHHHHhCCCCEEEECHHHHHHHHHhccccchhheeeeEecCHHHHhhcc-hHHHHHH
Confidence 4 68899999975433 112222346899999999999988764 5778899999999999998653 3333333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHH-HHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDL-ETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~L-e~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..... ......+++++|||.... +..+ ...+.. |....+.... ..
T Consensus 183 il~~l---p~~~~~q~ll~SATl~~~------------v~~l~~~~l~~-----------------p~~i~v~~~~--~~ 228 (572)
T PRK04537 183 LLRRM---PERGTRQTLLFSATLSHR------------VLELAYEHMNE-----------------PEKLVVETET--IT 228 (572)
T ss_pred HHHhc---ccccCceEEEEeCCccHH------------HHHHHHHHhcC-----------------CcEEEecccc--cc
Confidence 33211 111245799999997431 1111 111111 1100000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 229 ~~------------------------------------------------------------------------------ 230 (572)
T PRK04537 229 AA------------------------------------------------------------------------------ 230 (572)
T ss_pred cc------------------------------------------------------------------------------
Confidence 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+...+.......|+..|..++.. ..+.++||||+++..++.|++.
T Consensus 231 -------------------------------~i~q~~~~~~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~ 276 (572)
T PRK04537 231 -------------------------------RVRQRIYFPADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVART 276 (572)
T ss_pred -------------------------------ceeEEEEecCHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHH
Confidence 000000000013455556666554 3567899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.+ .++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||+
T Consensus 277 L~~-----~g~~v~~lhg~------l~~~eR~~il~~Fr~G~~~VLVaTdv~arGIDip~V~~VInyd~P~s~~~yvqRi 345 (572)
T PRK04537 277 LER-----HGYRVGVLSGD------VPQKKRESLLNRFQKGQLEILVATDVAARGLHIDGVKYVYNYDLPFDAEDYVHRI 345 (572)
T ss_pred HHH-----cCCCEEEEeCC------CCHHHHHHHHHHHHcCCCeEEEEehhhhcCCCccCCCEEEEcCCCCCHHHHhhhh
Confidence 986 37899999998 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecC
Q 000607 487 GRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~ 503 (1396)
||+||.| +.++.|+...
T Consensus 346 GRaGR~G~~G~ai~~~~~~ 364 (572)
T PRK04537 346 GRTARLGEEGDAISFACER 364 (572)
T ss_pred cccccCCCCceEEEEecHH
Confidence 9999987 5788887644
No 21
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=3.8e-36 Score=374.19 Aligned_cols=321 Identities=19% Similarity=0.201 Sum_probs=235.5
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---- 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---- 92 (1396)
....|+++|.++++.++++ |+|+.+|||||||.++++.+.+... ......++||||||++|+.|+++.++.+.
T Consensus 25 G~~~ptpiQ~~ai~~ll~g~dvl~~ApTGsGKT~af~lpll~~l~--~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~ 102 (629)
T PRK11634 25 GYEKPSPIQAECIPHLLNGRDVLGMAQTGSGKTAAFSLPLLHNLD--PELKAPQILVLAPTRELAVQVAEAMTDFSKHMR 102 (629)
T ss_pred CCCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHHHHHHHHHHHHhh--hccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcC
Confidence 4556999999999999997 8999999999999999876543322 12245689999999999999999988763
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
++++..++|+...+ ........+++|+|+||+.|++.+.++.+.++++.+||+||||++....-...+ .....
T Consensus 103 ~i~v~~~~gG~~~~----~q~~~l~~~~~IVVgTPgrl~d~l~r~~l~l~~l~~lVlDEAd~ml~~gf~~di-~~Il~-- 175 (629)
T PRK11634 103 GVNVVALYGGQRYD----VQLRALRQGPQIVVGTPGRLLDHLKRGTLDLSKLSGLVLDEADEMLRMGFIEDV-ETIMA-- 175 (629)
T ss_pred CceEEEEECCcCHH----HHHHHhcCCCCEEEECHHHHHHHHHcCCcchhhceEEEeccHHHHhhcccHHHH-HHHHH--
Confidence 68888888875433 122333347899999999999999999899999999999999998864322222 22221
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
......+++++|||+... +..+...+ ...|....+.......+ .
T Consensus 176 ---~lp~~~q~llfSAT~p~~------------i~~i~~~~----------------l~~~~~i~i~~~~~~~~-~---- 219 (629)
T PRK11634 176 ---QIPEGHQTALFSATMPEA------------IRRITRRF----------------MKEPQEVRIQSSVTTRP-D---- 219 (629)
T ss_pred ---hCCCCCeEEEEEccCChh------------HHHHHHHH----------------cCCCeEEEccCccccCC-c----
Confidence 123456789999997431 22222211 11111110000000000 0
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
T Consensus 220 -------------------------------------------------------------------------------- 219 (629)
T PRK11634 220 -------------------------------------------------------------------------------- 219 (629)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
+...........|...|.++|... ...++||||+++..+..|+..|..
T Consensus 220 --------------------------i~q~~~~v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~--- 267 (629)
T PRK11634 220 --------------------------ISQSYWTVWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALER--- 267 (629)
T ss_pred --------------------------eEEEEEEechhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHh---
Confidence 000000000134666677776552 456899999999999999999986
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.++.+..+||+ |++.+|.+++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||.|||||.
T Consensus 268 --~g~~~~~lhgd------~~q~~R~~il~~Fr~G~~~ILVATdv~arGIDip~V~~VI~~d~P~~~e~yvqRiGRtGRa 339 (629)
T PRK11634 268 --NGYNSAALNGD------MNQALREQTLERLKDGRLDILIATDVAARGLDVERISLVVNYDIPMDSESYVHRIGRTGRA 339 (629)
T ss_pred --CCCCEEEeeCC------CCHHHHHHHHHHHhCCCCCEEEEcchHhcCCCcccCCEEEEeCCCCCHHHHHHHhccccCC
Confidence 47899999998 6999999999999999999999999999999999999999999999999999999999999
Q ss_pred C--CcEEEEEecC
Q 000607 493 N--SDYLLMVKSG 503 (1396)
Q Consensus 493 g--s~~i~lv~~~ 503 (1396)
| +.+++++...
T Consensus 340 Gr~G~ai~~v~~~ 352 (629)
T PRK11634 340 GRAGRALLFVENR 352 (629)
T ss_pred CCcceEEEEechH
Confidence 8 5788888644
No 22
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=6.1e-36 Score=362.90 Aligned_cols=329 Identities=18% Similarity=0.206 Sum_probs=233.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|+++|.++++.++++ |+|+++|||||||+++++.+..... ....+.+++||+||++|+.|+.+.++.+. +.
T Consensus 48 ~~~~~~~Q~~ai~~i~~~~d~ii~apTGsGKT~~~~l~~l~~~~--~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 48 FEKPSAIQQRGIKPILDGYDTIGQAQSGTGKTATFVIAALQLID--YDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHhc--CCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 345999999999999998 8999999999999999876544322 22346789999999999999999888764 45
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
.+..+.|+.... ..|.....+.+|+|+||+.|.+.+.++...++++++||+||||++........+. ..+.
T Consensus 126 ~~~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~l~~i~lvViDEah~~~~~~~~~~~~-~i~~---- 196 (401)
T PTZ00424 126 RCHACVGGTVVR----DDINKLKAGVHMVVGTPGRVYDMIDKRHLRVDDLKLFILDEADEMLSRGFKGQIY-DVFK---- 196 (401)
T ss_pred eEEEEECCcCHH----HHHHHHcCCCCEEEECcHHHHHHHHhCCcccccccEEEEecHHHHHhcchHHHHH-HHHh----
Confidence 667777764322 3445555678999999999999999888889999999999999998654333333 3322
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.....++++++|||+... +..+.... ...|....+....... ...
T Consensus 197 -~~~~~~~~i~~SAT~~~~------------~~~~~~~~----------------~~~~~~~~~~~~~~~~-~~~----- 241 (401)
T PTZ00424 197 -KLPPDVQVALFSATMPNE------------ILELTTKF----------------MRDPKRILVKKDELTL-EGI----- 241 (401)
T ss_pred -hCCCCcEEEEEEecCCHH------------HHHHHHHH----------------cCCCEEEEeCCCCccc-CCc-----
Confidence 123457899999998541 11111111 0111110000000000 000
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.. .
T Consensus 242 --------------~~-----------------------------------------------~---------------- 244 (401)
T PTZ00424 242 --------------RQ-----------------------------------------------F---------------- 244 (401)
T ss_pred --------------eE-----------------------------------------------E----------------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
. . .......+...+.+++.. ....++||||+++..++.+++.|.+
T Consensus 245 ------------~------~---------~~~~~~~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~----- 289 (401)
T PTZ00424 245 ------------Y------V---------AVEKEEWKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHE----- 289 (401)
T ss_pred ------------E------E---------ecChHHHHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHH-----
Confidence 0 0 000001122233333322 2356899999999999999999986
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
.++.+..+||. |++++|..++++|++|+++|||||+++++|||+|++++||+||.|.+..+|+||.|||||.|
T Consensus 290 ~~~~~~~~h~~------~~~~~R~~i~~~f~~g~~~vLvaT~~l~~GiDip~v~~VI~~~~p~s~~~y~qr~GRagR~g~ 363 (401)
T PTZ00424 290 RDFTVSCMHGD------MDQKDRDLIMREFRSGSTRVLITTDLLARGIDVQQVSLVINYDLPASPENYIHRIGRSGRFGR 363 (401)
T ss_pred CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEEcccccCCcCcccCCEEEEECCCCCHHHEeecccccccCCC
Confidence 37889999997 69999999999999999999999999999999999999999999999999999999999987
Q ss_pred -CcEEEEEecCCcchHHHH
Q 000607 494 -SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~~~i 511 (1396)
|.++.+++..+......+
T Consensus 364 ~G~~i~l~~~~~~~~~~~~ 382 (401)
T PTZ00424 364 KGVAINFVTPDDIEQLKEI 382 (401)
T ss_pred CceEEEEEcHHHHHHHHHH
Confidence 578888875544333333
No 23
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.2e-36 Score=320.78 Aligned_cols=334 Identities=21% Similarity=0.236 Sum_probs=251.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~ 94 (1396)
...|.|.|...++++++| |+|-++-||||||..+.+.|. ..+...|.+--++|+.||++|+.|.++.|.. ..++
T Consensus 27 i~~pTpiQ~~cIpkILeGrdcig~AkTGsGKT~AFaLPil--~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 27 IKKPTPIQQACIPKILEGRDCIGCAKTGSGKTAAFALPIL--NRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCCchHhhhhHHHhcccccccccccCCCcchhhhHHHH--HhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 456999999999999998 899999999999999887554 4455677888999999999999999888875 4579
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
++..++|++..- .+-....++.+|+|+||+++.+.+... .+.+.++.++|+|||+++... .|..++..-..
T Consensus 105 K~~vivGG~d~i----~qa~~L~~rPHvVvatPGRlad~l~sn~~~~~~~~~rlkflVlDEADrvL~~-~f~d~L~~i~e 179 (442)
T KOG0340|consen 105 KVSVIVGGTDMI----MQAAILSDRPHVVVATPGRLADHLSSNLGVCSWIFQRLKFLVLDEADRVLAG-CFPDILEGIEE 179 (442)
T ss_pred eEEEEEccHHHh----hhhhhcccCCCeEecCccccccccccCCccchhhhhceeeEEecchhhhhcc-chhhHHhhhhc
Confidence 999999986543 223455568999999999999988754 356789999999999999875 67777766653
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEe-ccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKF-YKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~-y~~~~~~~~~ 249 (1396)
+. +...+-+++|||.... +.++ .+..+- .+....+. ++....+..+
T Consensus 180 ~l-----P~~RQtLlfSATitd~------------i~ql---~~~~i~-------------k~~a~~~e~~~~vstvetL 226 (442)
T KOG0340|consen 180 CL-----PKPRQTLLFSATITDT------------IKQL---FGCPIT-------------KSIAFELEVIDGVSTVETL 226 (442)
T ss_pred cC-----CCccceEEEEeehhhH------------HHHh---hcCCcc-------------cccceEEeccCCCCchhhh
Confidence 21 2224689999997431 2122 211110 00000000 0110010000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
..
T Consensus 227 ~q------------------------------------------------------------------------------ 228 (442)
T KOG0340|consen 227 YQ------------------------------------------------------------------------------ 228 (442)
T ss_pred hh------------------------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
.|+ .....-|-..|+.+|..|....+..++|||++..+++.|+..|+.
T Consensus 229 ----~yI----------------------------~~~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~ 276 (442)
T KOG0340|consen 229 ----GYI----------------------------LVSIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKN 276 (442)
T ss_pred ----hee----------------------------ecchhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhh
Confidence 000 000133445678888888655788899999999999999999997
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
+ ++++..+||. |++++|...+.+||++..++||||+|+++|+|||.+++|||||.|.++..||||.||+
T Consensus 277 l-----e~r~~~lHs~------m~Q~eR~~aLsrFrs~~~~iliaTDVAsRGLDIP~V~LVvN~diPr~P~~yiHRvGRt 345 (442)
T KOG0340|consen 277 L-----EVRVVSLHSQ------MPQKERLAALSRFRSNAARILIATDVASRGLDIPTVELVVNHDIPRDPKDYIHRVGRT 345 (442)
T ss_pred h-----ceeeeehhhc------chHHHHHHHHHHHhhcCccEEEEechhhcCCCCCceeEEEecCCCCCHHHHHHhhcch
Confidence 6 7899999998 7999999999999999999999999999999999999999999999999999999998
Q ss_pred cCCC--CcEEEEEecCCcchHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRLEN 513 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i~~ 513 (1396)
.|+| |..+.++++.|.+....|++
T Consensus 346 ARAGR~G~aiSivt~rDv~l~~aiE~ 371 (442)
T KOG0340|consen 346 ARAGRKGMAISIVTQRDVELLQAIEE 371 (442)
T ss_pred hcccCCcceEEEechhhHHHHHHHHH
Confidence 8877 67888888766655554443
No 24
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=100.00 E-value=1.6e-36 Score=334.32 Aligned_cols=212 Identities=34% Similarity=0.448 Sum_probs=184.4
Q ss_pred HHHHcCcccCCHHHHHHHhccCCCCCC--CCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHH
Q 000607 1154 LESLLNYSFRDPSLLVEALTHGSYMLP--EIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYA 1231 (1396)
Q Consensus 1154 le~~lgy~f~~~~ll~~Alth~S~~~~--~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La 1231 (1396)
||++|||+|+|+.|+.+||||||+... ....+|||||||||+||++++++|+|.+||+.++|.|+.+|+.+|||.+|+
T Consensus 1 ~e~~lgy~F~~~~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvsn~~la 80 (220)
T TIGR02191 1 LEKRLGYKFKNKELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVSEESLA 80 (220)
T ss_pred ChHHhCCCcCCHHHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhCHHHHH
Confidence 589999999999999999999999632 245699999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhc
Q 000607 1232 LSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPL 1311 (1396)
Q Consensus 1232 ~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~ 1311 (1396)
.+|.++||+++|+..+..... .....+|+++|+|||+|||||+|+| ++.+++|+.++
T Consensus 81 ~~a~~~gl~~~i~~~~~~~~~---------------------~~~~~~k~~ad~~eAliGAiyld~g--~~~~~~~i~~~ 137 (220)
T TIGR02191 81 EVARELGLGKFLLLGKGEEKS---------------------GGRRRESILADAFEALIGAIYLDSG--LEAARKFILKL 137 (220)
T ss_pred HHHHHCCcHHHhccCchHhhc---------------------CCcccchHHHHHHHHHHHHHHHhCC--HHHHHHHHHHH
Confidence 999999999999988653211 0134689999999999999999999 57899999998
Q ss_pred cccccCc---ccccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHH
Q 000607 1312 LEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEV 1385 (1396)
Q Consensus 1312 l~~~~~~---~~~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~A 1385 (1396)
+.|.+.. .....||++.|+++|++.+...+.|+.....| .+.|+|.|+++|..++ +|.|.|||+||+.||+.|
T Consensus 138 ~~~~~~~~~~~~~~~~pk~~L~e~~~~~~~~~p~y~~~~~~g~~~~~~f~~~v~~~~~~~~-~g~g~skk~A~~~AA~~A 216 (220)
T TIGR02191 138 LIPRIDAIEKEETLKDYKTALQEWAQARGKPLPEYRLIKEEGPDHDKEFTVEVSVNGEPYG-EGKGKSKKEAEQNAAKAA 216 (220)
T ss_pred HHHHHHhhhcccccCChHHHHHHHHHHcCCCCceEEEecccCCCCCceEEEEEEECCEEEE-EeeeCCHHHHHHHHHHHH
Confidence 8887653 23458999999999998877666677655444 3579999999999998 899999999999999999
Q ss_pred HHHh
Q 000607 1386 LKSL 1389 (1396)
Q Consensus 1386 L~~L 1389 (1396)
|++|
T Consensus 217 l~~l 220 (220)
T TIGR02191 217 LEKL 220 (220)
T ss_pred HHhC
Confidence 9875
No 25
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=3.7e-35 Score=359.25 Aligned_cols=335 Identities=20% Similarity=0.229 Sum_probs=244.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcE-EEEEeCCcccHHHHHHHHHHh---c
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFV-AVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~-vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
....|.++|..+++.++.+ |+|+.++||||||+++++.+-...... ...... ++||+||++|+.|.+++++.+ .
T Consensus 48 gf~~pt~IQ~~~IP~~l~g~Dvi~~A~TGsGKT~Af~lP~l~~l~~~-~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 48 GFEEPTPIQLAAIPLILAGRDVLGQAQTGTGKTAAFLLPLLQKILKS-VERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCCCHHHHHHHHHHhCCCCEEEECCCCChHHHHHHHHHHHHHhcc-cccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 3556999999999999997 899999999999999998554332211 122222 999999999999999988875 4
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++++..++|+.+.. .+-...-.+++|||+||++|++++.++.+.++++.++|+|||+++.+.+ +...+......
T Consensus 127 ~~~~~~~i~GG~~~~----~q~~~l~~~~~ivVaTPGRllD~i~~~~l~l~~v~~lVlDEADrmLd~G-f~~~i~~I~~~ 201 (513)
T COG0513 127 GGLRVAVVYGGVSIR----KQIEALKRGVDIVVATPGRLLDLIKRGKLDLSGVETLVLDEADRMLDMG-FIDDIEKILKA 201 (513)
T ss_pred CCccEEEEECCCCHH----HHHHHHhcCCCEEEECccHHHHHHHcCCcchhhcCEEEeccHhhhhcCC-CHHHHHHHHHh
Confidence 57889999986554 2223333369999999999999999999999999999999999999863 33333333221
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.....+++.+|||... .+..+...+ ...|....+.-.. ..
T Consensus 202 -----~p~~~qtllfSAT~~~------------~i~~l~~~~----------------l~~p~~i~v~~~~--~~----- 241 (513)
T COG0513 202 -----LPPDRQTLLFSATMPD------------DIRELARRY----------------LNDPVEIEVSVEK--LE----- 241 (513)
T ss_pred -----CCcccEEEEEecCCCH------------HHHHHHHHH----------------ccCCcEEEEcccc--cc-----
Confidence 1224679999999854 133332211 1111111110000 00
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
T Consensus 242 -------------------------------------------------------------------------------- 241 (513)
T COG0513 242 -------------------------------------------------------------------------------- 241 (513)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCc-cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLL-TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
.....+.+....... ..|+..|..++... ...++||||+++..+..|+..|..
T Consensus 242 ----------------------~~~~~i~q~~~~v~~~~~k~~~L~~ll~~~---~~~~~IVF~~tk~~~~~l~~~l~~- 295 (513)
T COG0513 242 ----------------------RTLKKIKQFYLEVESEEEKLELLLKLLKDE---DEGRVIVFVRTKRLVEELAESLRK- 295 (513)
T ss_pred ----------------------ccccCceEEEEEeCCHHHHHHHHHHHHhcC---CCCeEEEEeCcHHHHHHHHHHHHH-
Confidence 000000000000000 24888888888774 334799999999999999999997
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.|+++..+||+ |++.+|.+++++|++|+.+|||||+|+++|||||++++|||||+|.++..|+||+||+|
T Consensus 296 ----~g~~~~~lhG~------l~q~~R~~~l~~F~~g~~~vLVaTDvaaRGiDi~~v~~VinyD~p~~~e~yvHRiGRTg 365 (513)
T COG0513 296 ----RGFKVAALHGD------LPQEERDRALEKFKDGELRVLVATDVAARGLDIPDVSHVINYDLPLDPEDYVHRIGRTG 365 (513)
T ss_pred ----CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEEechhhccCCccccceeEEccCCCCHHHheeccCccc
Confidence 48999999998 69999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEecC-CcchHHHHHHH
Q 000607 491 MQN--SDYLLMVKSG-DSTTQSRLENY 514 (1396)
Q Consensus 491 R~g--s~~i~lv~~~-~~~~~~~i~~~ 514 (1396)
|.| |..+.|+... +......+++.
T Consensus 366 RaG~~G~ai~fv~~~~e~~~l~~ie~~ 392 (513)
T COG0513 366 RAGRKGVAISFVTEEEEVKKLKRIEKR 392 (513)
T ss_pred cCCCCCeEEEEeCcHHHHHHHHHHHHH
Confidence 998 6788888753 33444444443
No 26
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=7.5e-36 Score=331.35 Aligned_cols=331 Identities=23% Similarity=0.291 Sum_probs=242.0
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~ 92 (1396)
....|.|+|...++-++-| +++.++.||||||-++++.|. +++.+-++-..-||||||||++|+.|.+.+.++ |+
T Consensus 200 Gy~~PTpIQ~a~IPvallgkDIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqFt 279 (691)
T KOG0338|consen 200 GYKKPTPIQVATIPVALLGKDICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQFT 279 (691)
T ss_pred CCCCCCchhhhcccHHhhcchhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 3456999999999999887 899999999999999988543 333332333567899999999999998887764 67
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
++.|++..|+.++. .+...+-..+||||+||++|.+.+++. -++++++.+||+|||+++... -|+.-|.+....
T Consensus 280 ~I~~~L~vGGL~lk----~QE~~LRs~PDIVIATPGRlIDHlrNs~sf~ldsiEVLvlDEADRMLee-gFademnEii~l 354 (691)
T KOG0338|consen 280 DITVGLAVGGLDLK----AQEAVLRSRPDIVIATPGRLIDHLRNSPSFNLDSIEVLVLDEADRMLEE-GFADEMNEIIRL 354 (691)
T ss_pred cceeeeeecCccHH----HHHHHHhhCCCEEEecchhHHHHhccCCCccccceeEEEechHHHHHHH-HHHHHHHHHHHh
Confidence 89999999997765 334445568999999999999999876 578999999999999999974 445555555432
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
-....+.+++|||... .+..|-++- ..+|....+ ++. .....
T Consensus 355 -----cpk~RQTmLFSATMte------------eVkdL~slS----------------L~kPvrifv--d~~---~~~a~ 396 (691)
T KOG0338|consen 355 -----CPKNRQTMLFSATMTE------------EVKDLASLS----------------LNKPVRIFV--DPN---KDTAP 396 (691)
T ss_pred -----ccccccceeehhhhHH------------HHHHHHHhh----------------cCCCeEEEe--CCc---cccch
Confidence 2345678999999743 233333211 112222111 110 00000
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
.+.+.+-.
T Consensus 397 ~LtQEFiR------------------------------------------------------------------------ 404 (691)
T KOG0338|consen 397 KLTQEFIR------------------------------------------------------------------------ 404 (691)
T ss_pred hhhHHHhe------------------------------------------------------------------------
Confidence 01111000
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
+.+ +....+-..|..++... -..++||||.++..|..+.-+|--
T Consensus 405 --------------IR~-----------------~re~dRea~l~~l~~rt---f~~~~ivFv~tKk~AHRl~IllGL-- 448 (691)
T KOG0338|consen 405 --------------IRP-----------------KREGDREAMLASLITRT---FQDRTIVFVRTKKQAHRLRILLGL-- 448 (691)
T ss_pred --------------ecc-----------------ccccccHHHHHHHHHHh---cccceEEEEehHHHHHHHHHHHHH--
Confidence 000 00011222333333331 256899999999999999888864
Q ss_pred CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccC
Q 000607 412 PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 412 p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R 491 (1396)
-|++++-+||+ +++.+|.+.+++|+++++++||||+|+++||||+.+..||||++|.+...|+||+||+.|
T Consensus 449 ---lgl~agElHGs------LtQ~QRlesL~kFk~~eidvLiaTDvAsRGLDI~gV~tVINy~mP~t~e~Y~HRVGRTAR 519 (691)
T KOG0338|consen 449 ---LGLKAGELHGS------LTQEQRLESLEKFKKEEIDVLIATDVASRGLDIEGVQTVINYAMPKTIEHYLHRVGRTAR 519 (691)
T ss_pred ---hhchhhhhccc------ccHHHHHHHHHHHHhccCCEEEEechhhccCCccceeEEEeccCchhHHHHHHHhhhhhh
Confidence 38999999998 699999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--CcEEEEEecCCcchH
Q 000607 492 QN--SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 492 ~g--s~~i~lv~~~~~~~~ 508 (1396)
+| |..|.|+.+++.+..
T Consensus 520 AGRaGrsVtlvgE~dRkll 538 (691)
T KOG0338|consen 520 AGRAGRSVTLVGESDRKLL 538 (691)
T ss_pred cccCcceEEEeccccHHHH
Confidence 88 688999987765543
No 27
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=100.00 E-value=2.4e-35 Score=328.97 Aligned_cols=354 Identities=21% Similarity=0.245 Sum_probs=242.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHH-------hcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYL-------LRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~-------~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..|.|.|..++.-.++. |+|.++.||||||..++..+...... ...-.++.+++|+||++|+.|..++-.++
T Consensus 266 ~eptpIqR~aipl~lQ~rD~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt~kf 345 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNRDPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEETNKF 345 (673)
T ss_pred CCCchHHHhhccchhccCCeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHHHHh
Confidence 34899999999988885 89999999999999888744332221 22235789999999999999988877776
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---CcHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQYACIM 165 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im 165 (1396)
. ++++..+.|+...+ ++--..-.+++|+|+||+.|.+.|.+.++-+++..++|+|||+++.+- ..+..|+
T Consensus 346 ~~~lg~r~vsvigg~s~E----Eq~fqls~gceiviatPgrLid~Lenr~lvl~qctyvvldeadrmiDmgfE~dv~~iL 421 (673)
T KOG0333|consen 346 GKPLGIRTVSVIGGLSFE----EQGFQLSMGCEIVIATPGRLIDSLENRYLVLNQCTYVVLDEADRMIDMGFEPDVQKIL 421 (673)
T ss_pred cccccceEEEEecccchh----hhhhhhhccceeeecCchHHHHHHHHHHHHhccCceEeccchhhhhcccccHHHHHHH
Confidence 4 78888899985543 111234458999999999999999999999999999999999999863 2333333
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
... |..+..... +-.+.-..+..++.+ +.|.. .+. .....
T Consensus 422 ~~m---------------------Pssn~k~~t--de~~~~~~~~~~~~~~k~yrq----T~m----------ftatm-- 462 (673)
T KOG0333|consen 422 EQM---------------------PSSNAKPDT--DEKEGEERVRKNFSSSKKYRQ----TVM----------FTATM-- 462 (673)
T ss_pred HhC---------------------CccccCCCc--cchhhHHHHHhhcccccceeE----EEE----------EecCC--
Confidence 221 111111000 000011111111111 10000 000 00000
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
|..+.. +.. .|+... -....+..
T Consensus 463 -~p~ver-lar-----------------------------------------------------~ylr~p--v~vtig~~ 485 (673)
T KOG0333|consen 463 -PPAVER-LAR-----------------------------------------------------SYLRRP--VVVTIGSA 485 (673)
T ss_pred -ChHHHH-HHH-----------------------------------------------------HHhhCC--eEEEeccC
Confidence 000000 000 000000 00000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
.. ..+.+.+.+..-..+.|..+|+++|.++ ...++|||||++..++.|+
T Consensus 486 gk----------------------------~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lA 534 (673)
T KOG0333|consen 486 GK----------------------------PTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALA 534 (673)
T ss_pred CC----------------------------CccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHH
Confidence 00 0001111111223378899999999884 5789999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
+.|.+. ++++..+||+. ++.+|..+|..||+|..+|||||+|+++|||||++++||+||++.+..+|+|
T Consensus 535 k~LeK~-----g~~~~tlHg~k------~qeQRe~aL~~fr~~t~dIlVaTDvAgRGIDIpnVSlVinydmaksieDYtH 603 (673)
T KOG0333|consen 535 KILEKA-----GYKVTTLHGGK------SQEQRENALADFREGTGDILVATDVAGRGIDIPNVSLVINYDMAKSIEDYTH 603 (673)
T ss_pred HHHhhc-----cceEEEeeCCc------cHHHHHHHHHHHHhcCCCEEEEecccccCCCCCccceeeecchhhhHHHHHH
Confidence 999974 89999999986 8999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 485 SRGRARMQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 485 r~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
|+||+||+| |.++.|++..|.+.+..+.+.+
T Consensus 604 RIGRTgRAGk~GtaiSflt~~dt~v~ydLkq~l 636 (673)
T KOG0333|consen 604 RIGRTGRAGKSGTAISFLTPADTAVFYDLKQAL 636 (673)
T ss_pred HhccccccccCceeEEEeccchhHHHHHHHHHH
Confidence 999999999 6899999988776666655544
No 28
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=2.7e-34 Score=351.72 Aligned_cols=331 Identities=18% Similarity=0.256 Sum_probs=230.8
Q ss_pred cccchHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-
Q 000607 19 LPFARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~- 93 (1396)
...+|+||.++++.+..+ ++|+++|||+|||++++.++..+ ++++|||||+..|+.||.++|.++++
T Consensus 253 ~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l--------~k~tLILvps~~Lv~QW~~ef~~~~~l 324 (732)
T TIGR00603 253 TTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTV--------KKSCLVLCTSAVSVEQWKQQFKMWSTI 324 (732)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHh--------CCCEEEEeCcHHHHHHHHHHHHHhcCC
Confidence 466999999999998852 58999999999999999877644 35699999999999999999999864
Q ss_pred --CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--------cCccccceeEEEEeccccccCCCcHHH
Q 000607 94 --LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--------SYFKLNMIKVLILDECHHARGKHQYAC 163 (1396)
Q Consensus 94 --~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~~~ 163 (1396)
..++.++|+.... + .....|+|+|++++.+...+ ..+.-..|++||+|||||+... .|++
T Consensus 325 ~~~~I~~~tg~~k~~------~---~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~-~fr~ 394 (732)
T TIGR00603 325 DDSQICRFTSDAKER------F---HGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA-MFRR 394 (732)
T ss_pred CCceEEEEecCcccc------c---ccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH-HHHH
Confidence 5677777753211 1 12478999999998643222 1233357999999999999653 3444
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhh-cccccCCcceeEeccC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVL-SNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l-~~~~~~~~~~~~~y~~ 242 (1396)
++..+ ..+++|||||||.+.++. +..|...++.++|...-.+.. ..|+..+.-..+....
T Consensus 395 il~~l----------~a~~RLGLTATP~ReD~~---------~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~ 455 (732)
T TIGR00603 395 VLTIV----------QAHCKLGLTATLVREDDK---------ITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPM 455 (732)
T ss_pred HHHhc----------CcCcEEEEeecCcccCCc---------hhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecC
Confidence 44332 245789999999986642 334667778888776333333 2454443332222211
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh
Q 000607 243 DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE 322 (1396)
Q Consensus 243 ~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~ 322 (1396)
+.+.+. . ++.. .
T Consensus 456 ---t~~~~~----~----------yl~~-~-------------------------------------------------- 467 (732)
T TIGR00603 456 ---TPEFYR----E----------YLRE-N-------------------------------------------------- 467 (732)
T ss_pred ---CHHHHH----H----------HHHh-c--------------------------------------------------
Confidence 111100 0 0000 0
Q ss_pred hcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHH
Q 000607 323 QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIV 402 (1396)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~ 402 (1396)
.. .+. .+.. .-..|+..+..++..+. ..+.++||||++...+..
T Consensus 468 ----~~----~k~------~l~~---------------------~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~ 511 (732)
T TIGR00603 468 ----SR----KRM------LLYV---------------------MNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKE 511 (732)
T ss_pred ----ch----hhh------HHhh---------------------hChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHH
Confidence 00 000 0000 00456777767666542 467899999999988877
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-CeeEEEEecccccccCCCcccEEEEeCCCC-cHH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-LVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVC 480 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~ 480 (1396)
++..|. +.+++|. +++.+|.+++++|++| ++++||+|+|+.+|||+|++++||+++.|. |..
T Consensus 512 ~a~~L~----------~~~I~G~------ts~~ER~~il~~Fr~~~~i~vLv~SkVgdeGIDlP~a~vvI~~s~~~gS~~ 575 (732)
T TIGR00603 512 YAIKLG----------KPFIYGP------TSQQERMQILQNFQHNPKVNTIFLSKVGDTSIDLPEANVLIQISSHYGSRR 575 (732)
T ss_pred HHHHcC----------CceEECC------CCHHHHHHHHHHHHhCCCccEEEEecccccccCCCCCCEEEEeCCCCCCHH
Confidence 776553 3468898 4999999999999975 789999999999999999999999999985 999
Q ss_pred HHHHhhhcccCCCC---------cEEEEEecCCcc
Q 000607 481 SFIQSRGRARMQNS---------DYLLMVKSGDST 506 (1396)
Q Consensus 481 ~yiQr~GRA~R~gs---------~~i~lv~~~~~~ 506 (1396)
+|+||.||+.|.+. .++.+++.+..+
T Consensus 576 q~iQRlGRilR~~~~~~~~~~~A~fY~lVs~dT~E 610 (732)
T TIGR00603 576 QEAQRLGRILRAKKGSDAEEYNAFFYSLVSKDTQE 610 (732)
T ss_pred HHHHHhcccccCCCCCccccccceEEEEecCCchH
Confidence 99999999999751 347788766543
No 29
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=5.1e-34 Score=325.47 Aligned_cols=344 Identities=20% Similarity=0.209 Sum_probs=244.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR--------KPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~--------~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
...|.|+|+-+++.+..| +.+++++||||||.++++.|-..+...+ .+..++++||+||++||.|.+++.+
T Consensus 94 ~~~ptpvQk~sip~i~~Grdl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~nea~ 173 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISGGRDLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYNEAR 173 (482)
T ss_pred ccCCCcceeeccceeecCCceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHHHHH
Confidence 455999999999999998 7999999999999999985543332211 0124789999999999999999999
Q ss_pred Hhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 90 MHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 90 ~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
++. ..++...+|+.+.. ........+++|+|+||+.|.+.+..+.+.++++.++|+|||+++.+.-.+.--++
T Consensus 174 k~~~~s~~~~~~~ygg~~~~----~q~~~~~~gcdIlvaTpGrL~d~~e~g~i~l~~~k~~vLDEADrMlD~mgF~p~Ir 249 (482)
T KOG0335|consen 174 KFSYLSGMKSVVVYGGTDLG----AQLRFIKRGCDILVATPGRLKDLIERGKISLDNCKFLVLDEADRMLDEMGFEPQIR 249 (482)
T ss_pred hhcccccceeeeeeCCcchh----hhhhhhccCccEEEecCchhhhhhhcceeehhhCcEEEecchHHhhhhccccccHH
Confidence 986 46777778874433 33455566899999999999999999999999999999999999997422211122
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..... .........+.+++|||-... +..+-..+-..-|+. +.
T Consensus 250 ~iv~~-~~~~~~~~~qt~mFSAtfp~~------------iq~l~~~fl~~~yi~-------------------la----- 292 (482)
T KOG0335|consen 250 KIVEQ-LGMPPKNNRQTLLFSATFPKE------------IQRLAADFLKDNYIF-------------------LA----- 292 (482)
T ss_pred HHhcc-cCCCCccceeEEEEeccCChh------------hhhhHHHHhhccceE-------------------EE-----
Confidence 11111 111122344577778875321 111110000000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.+...
T Consensus 293 --------------------------------------------------------------------------V~rvg- 297 (482)
T KOG0335|consen 293 --------------------------------------------------------------------------VGRVG- 297 (482)
T ss_pred --------------------------------------------------------------------------Eeeec-
Confidence 00000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhc------CCCCeeEEEEechHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYR------GVEDIRCIIFVERVITA 400 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~------~~~~~k~IIFv~~r~ta 400 (1396)
....++.+.+..-....|...|+++|..-. .....+++|||+++..|
T Consensus 298 ---------------------------~~~~ni~q~i~~V~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~ 350 (482)
T KOG0335|consen 298 ---------------------------STSENITQKILFVNEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGA 350 (482)
T ss_pred ---------------------------cccccceeEeeeecchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchh
Confidence 000111111222223567777777776421 11234899999999999
Q ss_pred HHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHH
Q 000607 401 IVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVC 480 (1396)
Q Consensus 401 ~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~ 480 (1396)
..+..+|.. .++++..+||.. ++.+|.+.++.||+|.+.+||||+|+++|||||++.+||+||+|.+..
T Consensus 351 d~l~~~l~~-----~~~~~~sIhg~~------tq~er~~al~~Fr~g~~pvlVaT~VaaRGlDi~~V~hVInyDmP~d~d 419 (482)
T KOG0335|consen 351 DELAAFLSS-----NGYPAKSIHGDR------TQIEREQALNDFRNGKAPVLVATNVAARGLDIPNVKHVINYDMPADID 419 (482)
T ss_pred hHHHHHHhc-----CCCCceeecchh------hhhHHHHHHHHhhcCCcceEEEehhhhcCCCCCCCceeEEeecCcchh
Confidence 999999996 489999999985 999999999999999999999999999999999999999999999999
Q ss_pred HHHHhhhcccCCC--CcEEEEEecCCcchHHHHHHHHH
Q 000607 481 SFIQSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 481 ~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
+|+||+||+||.| +..+.|++..+....+.+.+.+.
T Consensus 420 ~YvHRIGRTGR~Gn~G~atsf~n~~~~~i~~~L~~~l~ 457 (482)
T KOG0335|consen 420 DYVHRIGRTGRVGNGGRATSFFNEKNQNIAKALVEILT 457 (482)
T ss_pred hHHHhccccccCCCCceeEEEeccccchhHHHHHHHHH
Confidence 9999999999988 68889998666555555544443
No 30
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.8e-34 Score=293.21 Aligned_cols=334 Identities=20% Similarity=0.245 Sum_probs=246.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
...|-..|+.++..+++| |+|+.+..|+|||.++.. ++..+ . + ....-.+++|.||++|+.|..+.+... .+
T Consensus 47 fekPS~IQqrAi~~IlkGrdViaQaqSGTGKTa~~si~vlq~~-d-~-~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mn 123 (400)
T KOG0328|consen 47 FEKPSAIQQRAIPQILKGRDVIAQAQSGTGKTATFSISVLQSL-D-I-SVRETQALILSPTRELAVQIQKVILALGDYMN 123 (400)
T ss_pred cCCchHHHhhhhhhhhcccceEEEecCCCCceEEEEeeeeeec-c-c-ccceeeEEEecChHHHHHHHHHHHHHhccccc
Confidence 345888999999999998 899999999999987654 22221 1 0 113457999999999999999988865 47
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..+.|+.++. +..++.--+.+|+.+||++.+++++++.++-..+.+||+|||+.+.+..--.+|.. .|.
T Consensus 124 vq~hacigg~n~g----edikkld~G~hvVsGtPGrv~dmikr~~L~tr~vkmlVLDEaDemL~kgfk~Qiyd-iyr--- 195 (400)
T KOG0328|consen 124 VQCHACIGGKNLG----EDIKKLDYGQHVVSGTPGRVLDMIKRRSLRTRAVKMLVLDEADEMLNKGFKEQIYD-IYR--- 195 (400)
T ss_pred ceEEEEecCCccc----hhhhhhcccceEeeCCCchHHHHHHhccccccceeEEEeccHHHHHHhhHHHHHHH-HHH---
Confidence 8899899987654 22233335889999999999999999999999999999999999987632223322 221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
..++..+++.+|||... ++.+. ..+|.+.|....+.-+ ..+.+-
T Consensus 196 --~lp~~~Qvv~~SATlp~------------eilem----------------t~kfmtdpvrilvkrd--eltlEg---- 239 (400)
T KOG0328|consen 196 --YLPPGAQVVLVSATLPH------------EILEM----------------TEKFMTDPVRILVKRD--ELTLEG---- 239 (400)
T ss_pred --hCCCCceEEEEeccCcH------------HHHHH----------------HHHhcCCceeEEEecC--CCchhh----
Confidence 22445689999999854 12111 2234444433222111 111110
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+++ ++-. .
T Consensus 240 -------------------------------IKq----------------------f~v~----------v--------- 247 (400)
T KOG0328|consen 240 -------------------------------IKQ----------------------FFVA----------V--------- 247 (400)
T ss_pred -------------------------------hhh----------------------heee----------e---------
Confidence 000 0000 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
....-|...|.++-... .-.+++|||+++..+++|.+-+++
T Consensus 248 --------------------------------e~EewKfdtLcdLYd~L---tItQavIFcnTk~kVdwLtekm~~---- 288 (400)
T KOG0328|consen 248 --------------------------------EKEEWKFDTLCDLYDTL---TITQAVIFCNTKRKVDWLTEKMRE---- 288 (400)
T ss_pred --------------------------------chhhhhHhHHHHHhhhh---ehheEEEEecccchhhHHHHHHHh----
Confidence 00023444555543332 456899999999999999999997
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++.+.++||+ |.+++|.++++.||+|+.+|||+|+|-++|||+|.+++|||||+|.+...||||+||.||-|
T Consensus 289 -~nftVssmHGD------m~qkERd~im~dFRsg~SrvLitTDVwaRGiDv~qVslviNYDLP~nre~YIHRIGRSGRFG 361 (400)
T KOG0328|consen 289 -ANFTVSSMHGD------MEQKERDKIMNDFRSGKSRVLITTDVWARGIDVQQVSLVINYDLPNNRELYIHRIGRSGRFG 361 (400)
T ss_pred -hCceeeeccCC------cchhHHHHHHHHhhcCCceEEEEechhhccCCcceeEEEEecCCCccHHHHhhhhccccccC
Confidence 47899999998 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCCcchHHHHHHHHHH
Q 000607 494 --SDYLLMVKSGDSTTQSRLENYLAS 517 (1396)
Q Consensus 494 --s~~i~lv~~~~~~~~~~i~~~~~~ 517 (1396)
+.++-|+..+|......+++++..
T Consensus 362 RkGvainFVk~~d~~~lrdieq~yst 387 (400)
T KOG0328|consen 362 RKGVAINFVKSDDLRILRDIEQYYST 387 (400)
T ss_pred CcceEEEEecHHHHHHHHHHHHHHhh
Confidence 678889988877777777777654
No 31
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.8e-33 Score=344.42 Aligned_cols=321 Identities=17% Similarity=0.189 Sum_probs=219.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
...+|++|.++++.++++ |+++++|||+|||+++.+.+.. .+..++||+|+++|+.||.+.++. .++.+.
T Consensus 9 ~~~~r~~Q~~ai~~~l~g~dvlv~apTGsGKTl~y~lp~l~--------~~~~~lVi~P~~~L~~dq~~~l~~-~gi~~~ 79 (470)
T TIGR00614 9 LSSFRPVQLEVINAVLLGRDCFVVMPTGGGKSLCYQLPALC--------SDGITLVISPLISLMEDQVLQLKA-SGIPAT 79 (470)
T ss_pred CCCCCHHHHHHHHHHHcCCCEEEEcCCCCcHhHHHHHHHHH--------cCCcEEEEecHHHHHHHHHHHHHH-cCCcEE
Confidence 345899999999999997 8999999999999998865431 245699999999999999999986 478888
Q ss_pred EEeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhH-hhcCc-cccceeEEEEeccccccCC-CcHHHHHHHHHHhhc
Q 000607 98 KYWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGL-RLSYF-KLNMIKVLILDECHHARGK-HQYACIMTEFYHRLL 173 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l-~~~~~-~l~~i~llI~DEaH~~~~~-~~~~~im~~f~~~~~ 173 (1396)
.+.|+...+.. ...+... ....+|+++||+.+.... ....+ ...++++||+||||++... |.++........ +
T Consensus 80 ~l~~~~~~~~~-~~i~~~~~~~~~~il~~TPe~l~~~~~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~--l 156 (470)
T TIGR00614 80 FLNSSQSKEQQ-KNVLTDLKDGKIKLLYVTPEKCSASNRLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS--L 156 (470)
T ss_pred EEeCCCCHHHH-HHHHHHHhcCCCCEEEECHHHHcCchhHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH--H
Confidence 78776432210 0112222 235899999999976422 11112 4678999999999998753 333333222110 0
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
... .+..++++||||+... ... .+...++-. .|......++...+..
T Consensus 157 ~~~-~~~~~~l~lTAT~~~~--------~~~---di~~~l~l~---------------~~~~~~~s~~r~nl~~------ 203 (470)
T TIGR00614 157 KQK-FPNVPIMALTATASPS--------VRE---DILRQLNLK---------------NPQIFCTSFDRPNLYY------ 203 (470)
T ss_pred HHH-cCCCceEEEecCCCHH--------HHH---HHHHHcCCC---------------CCcEEeCCCCCCCcEE------
Confidence 001 1234689999998542 111 122222110 0000000000000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 204 -------------------------------------------------------------------------------- 203 (470)
T TIGR00614 204 -------------------------------------------------------------------------------- 203 (470)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
... . .....+..+.+.+.. ..++.++||||+++..++.++..|+.
T Consensus 204 --------------------~v~----~-----~~~~~~~~l~~~l~~--~~~~~~~IIF~~s~~~~e~la~~L~~---- 248 (470)
T TIGR00614 204 --------------------EVR----R-----KTPKILEDLLRFIRK--EFKGKSGIIYCPSRKKSEQVTASLQN---- 248 (470)
T ss_pred --------------------EEE----e-----CCccHHHHHHHHHHH--hcCCCceEEEECcHHHHHHHHHHHHh----
Confidence 000 0 001122334444432 12456789999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |++.+|.+++++|++|+++|||||+++++|||+|++++||+||+|.|...|+||.|||||.|
T Consensus 249 -~g~~~~~~H~~------l~~~eR~~i~~~F~~g~~~vLVaT~~~~~GID~p~V~~VI~~~~P~s~~~y~Qr~GRaGR~G 321 (470)
T TIGR00614 249 -LGIAAGAYHAG------LEISARDDVHHKFQRDEIQVVVATVAFGMGINKPDVRFVIHYSLPKSMESYYQESGRAGRDG 321 (470)
T ss_pred -cCCCeeEeeCC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCCcccceEEEEeCCCCCHHHHHhhhcCcCCCC
Confidence 37899999987 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCCcc
Q 000607 494 --SDYLLMVKSGDST 506 (1396)
Q Consensus 494 --s~~i~lv~~~~~~ 506 (1396)
+.+++++...|..
T Consensus 322 ~~~~~~~~~~~~d~~ 336 (470)
T TIGR00614 322 LPSECHLFYAPADIN 336 (470)
T ss_pred CCceEEEEechhHHH
Confidence 5788888765443
No 32
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=301.48 Aligned_cols=325 Identities=20% Similarity=0.250 Sum_probs=244.4
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH---HHHHhcCCeE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE---AIKMHTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~---~i~~~~~~~v 96 (1396)
.|-|.|.|.++.|+.| |+++.+-.|+|||-+++..+.+.. -.+...-..+++|||++|+-|..+ ++.+++++.|
T Consensus 107 kPSPiQeesIPiaLtGrdiLaRaKNGTGKT~a~~IP~Leki--d~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~v 184 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGRDILARAKNGTGKTAAYCIPVLEKI--DPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIKV 184 (459)
T ss_pred CCCCccccccceeecchhhhhhccCCCCCccceechhhhhc--CccccceeEEEEeecchhhHHHHHHHHHHhcccCeEE
Confidence 4889999999999998 899999999999998876443221 112245678999999999987554 5567789999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
..-+|+.+.. +...+.-+..+++|+||++++|+...+.-.+++..++|+|||+.+... .+..++.....-
T Consensus 185 mvttGGT~lr----DDI~Rl~~~VH~~vgTPGRIlDL~~KgVa~ls~c~~lV~DEADKlLs~-~F~~~~e~li~~----- 254 (459)
T KOG0326|consen 185 MVTTGGTSLR----DDIMRLNQTVHLVVGTPGRILDLAKKGVADLSDCVILVMDEADKLLSV-DFQPIVEKLISF----- 254 (459)
T ss_pred EEecCCcccc----cceeeecCceEEEEcCChhHHHHHhcccccchhceEEEechhhhhhch-hhhhHHHHHHHh-----
Confidence 9999986543 223344457899999999999999999999999999999999999975 677777766632
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADE 256 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~ 256 (1396)
..+.+++++.|||-.... . .-+.++...|-+.. +.++
T Consensus 255 lP~~rQillySATFP~tV------------k----------------~Fm~~~l~kPy~IN---------------LM~e 291 (459)
T KOG0326|consen 255 LPKERQILLYSATFPLTV------------K----------------GFMDRHLKKPYEIN---------------LMEE 291 (459)
T ss_pred CCccceeeEEecccchhH------------H----------------HHHHHhccCcceee---------------hhhh
Confidence 345678999999964311 0 01112222222110 1111
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
+. +.+ + .+++.
T Consensus 292 Lt---------l~G--------------v----------------------tQyYa------------------------ 302 (459)
T KOG0326|consen 292 LT---------LKG--------------V----------------------TQYYA------------------------ 302 (459)
T ss_pred hh---------hcc--------------h----------------------hhhee------------------------
Confidence 10 000 0 00110
Q ss_pred HHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
.-..+.|+..|-.++... .-.++||||++...++.|++-+.++ |
T Consensus 303 ----------------------------fV~e~qKvhCLntLfskL---qINQsIIFCNS~~rVELLAkKITel-----G 346 (459)
T KOG0326|consen 303 ----------------------------FVEERQKVHCLNTLFSKL---QINQSIIFCNSTNRVELLAKKITEL-----G 346 (459)
T ss_pred ----------------------------eechhhhhhhHHHHHHHh---cccceEEEeccchHhHHHHHHHHhc-----c
Confidence 001156777776666654 3568999999999999999999986 8
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--C
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--S 494 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s 494 (1396)
+.|-++|.. |-+..|+.++.+||+|.|+.||||+.+.+|||+|++|+||+||.|.+..+|.||+||+||-| +
T Consensus 347 yscyyiHak------M~Q~hRNrVFHdFr~G~crnLVctDL~TRGIDiqavNvVINFDfpk~aEtYLHRIGRsGRFGhlG 420 (459)
T KOG0326|consen 347 YSCYYIHAK------MAQEHRNRVFHDFRNGKCRNLVCTDLFTRGIDIQAVNVVINFDFPKNAETYLHRIGRSGRFGHLG 420 (459)
T ss_pred chhhHHHHH------HHHhhhhhhhhhhhccccceeeehhhhhcccccceeeEEEecCCCCCHHHHHHHccCCccCCCcc
Confidence 999999987 89999999999999999999999999999999999999999999999999999999999999 6
Q ss_pred cEEEEEecCCcchHHHH
Q 000607 495 DYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 495 ~~i~lv~~~~~~~~~~i 511 (1396)
-.+.+++-+|.....++
T Consensus 421 lAInLityedrf~L~~I 437 (459)
T KOG0326|consen 421 LAINLITYEDRFNLYRI 437 (459)
T ss_pred eEEEEEehhhhhhHHHH
Confidence 88899886654443333
No 33
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=1.2e-32 Score=349.75 Aligned_cols=337 Identities=20% Similarity=0.233 Sum_probs=224.5
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc--CCe
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--DLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~ 95 (1396)
...|+++|.++++.+++| |+|+.+|||||||+++.+.+...+. ..++.++|||+||++|+.||.+.++++. +++
T Consensus 34 ~~~p~~~Q~~ai~~il~G~nvvv~apTGSGKTla~~LPiL~~l~---~~~~~~aL~l~PtraLa~q~~~~l~~l~~~~i~ 110 (742)
T TIGR03817 34 IHRPWQHQARAAELAHAGRHVVVATGTASGKSLAYQLPVLSALA---DDPRATALYLAPTKALAADQLRAVRELTLRGVR 110 (742)
T ss_pred CCcCCHHHHHHHHHHHCCCCEEEECCCCCcHHHHHHHHHHHHHh---hCCCcEEEEEcChHHHHHHHHHHHHHhccCCeE
Confidence 345999999999999998 8999999999999999986543322 2345689999999999999999999874 678
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCC--CcHHHHHHHHH
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGK--HQYACIMTEFY 169 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~~f~ 169 (1396)
+..+.|+...+ .-.....+++|+|+||+.|...+... ...++++++||+||||.+.+. .....++....
T Consensus 111 v~~~~Gdt~~~-----~r~~i~~~~~IivtTPd~L~~~~L~~~~~~~~~l~~l~~vViDEah~~~g~fg~~~~~il~rL~ 185 (742)
T TIGR03817 111 PATYDGDTPTE-----ERRWAREHARYVLTNPDMLHRGILPSHARWARFLRRLRYVVIDECHSYRGVFGSHVALVLRRLR 185 (742)
T ss_pred EEEEeCCCCHH-----HHHHHhcCCCEEEEChHHHHHhhccchhHHHHHHhcCCEEEEeChhhccCccHHHHHHHHHHHH
Confidence 88888875432 11223346899999999987533211 122688999999999998652 11222333322
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
. .. ......|+++++|||..+.. ...+.+++..+..+ +. ...+........+.+... ..
T Consensus 186 r-i~-~~~g~~~q~i~~SATi~n~~------------~~~~~l~g~~~~~i-~~----~~~~~~~~~~~~~~p~~~--~~ 244 (742)
T TIGR03817 186 R-LC-ARYGASPVFVLASATTADPA------------AAASRLIGAPVVAV-TE----DGSPRGARTVALWEPPLT--EL 244 (742)
T ss_pred H-HH-HhcCCCCEEEEEecCCCCHH------------HHHHHHcCCCeEEE-CC----CCCCcCceEEEEecCCcc--cc
Confidence 1 11 11234589999999986521 11223333322211 00 001111111111111000 00
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
..
T Consensus 245 -------------------~~----------------------------------------------------------- 246 (742)
T TIGR03817 245 -------------------TG----------------------------------------------------------- 246 (742)
T ss_pred -------------------cc-----------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
... ..........+...+.+++. .+.++||||++|..++.++..|++
T Consensus 247 ------------------------~~~----~~~r~~~~~~~~~~l~~l~~-----~~~~~IVF~~sr~~ae~l~~~l~~ 293 (742)
T TIGR03817 247 ------------------------ENG----APVRRSASAEAADLLADLVA-----EGARTLTFVRSRRGAELVAAIARR 293 (742)
T ss_pred ------------------------ccc----cccccchHHHHHHHHHHHHH-----CCCCEEEEcCCHHHHHHHHHHHHH
Confidence 000 00000001234444444443 256999999999999999998876
Q ss_pred hcCCC---CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 410 LLPRH---CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 410 ~~p~~---~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
..... .+.++..+||+ |++++|.+++++|++|++++||||+++|+|||||++++||+||.|.+..+|+||.
T Consensus 294 ~l~~~~~~l~~~v~~~hgg------~~~~eR~~ie~~f~~G~i~vLVaTd~lerGIDI~~vd~VI~~~~P~s~~~y~qRi 367 (742)
T TIGR03817 294 LLGEVDPDLAERVAAYRAG------YLPEDRRELERALRDGELLGVATTNALELGVDISGLDAVVIAGFPGTRASLWQQA 367 (742)
T ss_pred HHHhhccccccchhheecC------CCHHHHHHHHHHHHcCCceEEEECchHhccCCcccccEEEEeCCCCCHHHHHHhc
Confidence 42110 14566777776 6999999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEe
Q 000607 487 GRARMQN--SDYLLMVK 501 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~ 501 (1396)
|||||.| |.+++++.
T Consensus 368 GRaGR~G~~g~ai~v~~ 384 (742)
T TIGR03817 368 GRAGRRGQGALVVLVAR 384 (742)
T ss_pred cccCCCCCCcEEEEEeC
Confidence 9999988 45555544
No 34
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=100.00 E-value=9.1e-33 Score=309.49 Aligned_cols=337 Identities=21% Similarity=0.253 Sum_probs=250.3
Q ss_pred CCCCccccccCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC--CCcEEEEEeCCcccHH
Q 000607 6 MESDTTEEVSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP--SPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 6 ~~~~~~~~~~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~--~~k~vl~LvPt~~Lv~ 82 (1396)
++-.+..+.-....+.+.+.|...+..++.| ++|.++-||||||++++..+.+-+.+.+.. .|--+|||.|||+|+.
T Consensus 76 ls~~t~kgLke~~fv~~teiQ~~~Ip~aL~G~DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~ 155 (758)
T KOG0343|consen 76 LSQKTLKGLKEAKFVKMTEIQRDTIPMALQGHDVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELAL 155 (758)
T ss_pred CchHHHHhHhhcCCccHHHHHHhhcchhccCcccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHH
Confidence 3444555555566677999999999999998 899999999999999988544433433322 5667999999999999
Q ss_pred HHHHHHHH---hcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-cCccccceeEEEEeccccccCC
Q 000607 83 QQAEAIKM---HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 83 Q~~~~i~~---~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
|.++++.+ +.++..|++.|+.++. .....+.+.+|+||||++|+..++. ..++-+++.+||+|||+++.+-
T Consensus 156 QtFevL~kvgk~h~fSaGLiiGG~~~k-----~E~eRi~~mNILVCTPGRLLQHmde~~~f~t~~lQmLvLDEADR~LDM 230 (758)
T KOG0343|consen 156 QTFEVLNKVGKHHDFSAGLIIGGKDVK-----FELERISQMNILVCTPGRLLQHMDENPNFSTSNLQMLVLDEADRMLDM 230 (758)
T ss_pred HHHHHHHHHhhccccccceeecCchhH-----HHHHhhhcCCeEEechHHHHHHhhhcCCCCCCcceEEEeccHHHHHHH
Confidence 99999886 5689999999987654 2344556899999999999998875 4677889999999999999873
Q ss_pred CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeE
Q 000607 159 HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFK 238 (1396)
Q Consensus 159 ~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~ 238 (1396)
-+...|..... ..+...+.|++|||+..+ .+.+..|.- -+..++.+
T Consensus 231 -GFk~tL~~Ii~-----~lP~~RQTLLFSATqt~s---------vkdLaRLsL-~dP~~vsv------------------ 276 (758)
T KOG0343|consen 231 -GFKKTLNAIIE-----NLPKKRQTLLFSATQTKS---------VKDLARLSL-KDPVYVSV------------------ 276 (758)
T ss_pred -hHHHHHHHHHH-----hCChhheeeeeecccchh---------HHHHHHhhc-CCCcEEEE------------------
Confidence 23333332221 224456799999999652 122333210 11111111
Q ss_pred eccC-CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccc
Q 000607 239 FYKY-DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESD 317 (1396)
Q Consensus 239 ~y~~-~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~ 317 (1396)
.-.. ...|..+.
T Consensus 277 he~a~~atP~~L~------------------------------------------------------------------- 289 (758)
T KOG0343|consen 277 HENAVAATPSNLQ------------------------------------------------------------------- 289 (758)
T ss_pred eccccccChhhhh-------------------------------------------------------------------
Confidence 0000 01111100
Q ss_pred hhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH
Q 000607 318 FFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV 397 (1396)
Q Consensus 318 ~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r 397 (1396)
+.+ -...+..|+..|...++.+ ...+.|||+.+-
T Consensus 290 ---------------------------Q~y----------------~~v~l~~Ki~~L~sFI~sh---lk~K~iVF~Ssc 323 (758)
T KOG0343|consen 290 ---------------------------QSY----------------VIVPLEDKIDMLWSFIKSH---LKKKSIVFLSSC 323 (758)
T ss_pred ---------------------------heE----------------EEEehhhHHHHHHHHHHhc---cccceEEEEehh
Confidence 000 0001156778888877774 578999999999
Q ss_pred HHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC
Q 000607 398 ITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR 477 (1396)
Q Consensus 398 ~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~ 477 (1396)
..+..++..+..+. .|++...+||. |+++.|.++..+|-...--||+||+|+++|+|+|++|.||.+|.|.
T Consensus 324 Kqvkf~~e~F~rlr---pg~~l~~L~G~------~~Q~~R~ev~~~F~~~~~~vLF~TDv~aRGLDFpaVdwViQ~DCPe 394 (758)
T KOG0343|consen 324 KQVKFLYEAFCRLR---PGIPLLALHGT------MSQKKRIEVYKKFVRKRAVVLFCTDVAARGLDFPAVDWVIQVDCPE 394 (758)
T ss_pred hHHHHHHHHHHhcC---CCCceeeeccc------hhHHHHHHHHHHHHHhcceEEEeehhhhccCCCcccceEEEecCch
Confidence 99999999999874 37899999998 7999999999999999999999999999999999999999999999
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
+..+||||.||+.|.+ |..++|+..+
T Consensus 395 dv~tYIHRvGRtAR~~~~G~sll~L~ps 422 (758)
T KOG0343|consen 395 DVDTYIHRVGRTARYKERGESLLMLTPS 422 (758)
T ss_pred hHHHHHHHhhhhhcccCCCceEEEEcch
Confidence 9999999999999976 6677777655
No 35
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.5e-32 Score=342.58 Aligned_cols=315 Identities=17% Similarity=0.204 Sum_probs=214.4
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKY 99 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 99 (1396)
.+|++|.++++.++.| |+|+.||||+|||+++.+.+.. .+..+|||+|+++|+.+|...+.. .++++..+
T Consensus 460 sFRp~Q~eaI~aiL~GrDVLVimPTGSGKSLcYQLPAL~--------~~GiTLVISPLiSLmqDQV~~L~~-~GI~Aa~L 530 (1195)
T PLN03137 460 SFRPNQREIINATMSGYDVFVLMPTGGGKSLTYQLPALI--------CPGITLVISPLVSLIQDQIMNLLQ-ANIPAASL 530 (1195)
T ss_pred CCCHHHHHHHHHHHcCCCEEEEcCCCccHHHHHHHHHHH--------cCCcEEEEeCHHHHHHHHHHHHHh-CCCeEEEE
Confidence 4899999999999998 8999999999999999876532 134799999999999988777766 47888888
Q ss_pred eCCCCcccCCccchHHh---hccCcEEEecHHHHHH--hHhhcC---ccccceeEEEEeccccccCC-CcHHHHHHHHHH
Q 000607 100 WGDMGVDFWDGATWKEE---MSKHEVLVMTPQILLD--GLRLSY---FKLNMIKVLILDECHHARGK-HQYACIMTEFYH 170 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~---~~~~~ViV~T~q~L~~--~l~~~~---~~l~~i~llI~DEaH~~~~~-~~~~~im~~f~~ 170 (1396)
.|+...... ...+... ....+|+++||+.|.. .+.+.. .....+++|||||||++... |.++......-
T Consensus 531 ~s~~s~~eq-~~ilr~l~s~~g~~~ILyvTPERL~~~d~ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L~- 608 (1195)
T PLN03137 531 SAGMEWAEQ-LEILQELSSEYSKYKLLYVTPEKVAKSDSLLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGLG- 608 (1195)
T ss_pred ECCCCHHHH-HHHHHHHHhcCCCCCEEEEChHHhhcchHHHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHHH-
Confidence 887543210 1112221 1468999999999862 122111 12345899999999999853 44433222110
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.++.... ..++++||||.... +.+.+.......+..++. ....+|.. .|.... .
T Consensus 609 -~Lr~~fp-~vPilALTATAT~~--------V~eDI~~~L~l~~~~vfr--------~Sf~RpNL---~y~Vv~--k--- 662 (1195)
T PLN03137 609 -ILKQKFP-NIPVLALTATATAS--------VKEDVVQALGLVNCVVFR--------QSFNRPNL---WYSVVP--K--- 662 (1195)
T ss_pred -HHHHhCC-CCCeEEEEecCCHH--------HHHHHHHHcCCCCcEEee--------cccCccce---EEEEec--c---
Confidence 0011112 24578999998542 222222211111111110 00011110 000000 0
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
T Consensus 663 -------------------------------------------------------------------------------- 662 (1195)
T PLN03137 663 -------------------------------------------------------------------------------- 662 (1195)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSEL 410 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~ 410 (1396)
....+..+.+++... ..+.++||||.+|..++.++..|..
T Consensus 663 -------------------------------------~kk~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~- 702 (1195)
T PLN03137 663 -------------------------------------TKKCLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQE- 702 (1195)
T ss_pred -------------------------------------chhHHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHH-
Confidence 000112222333221 2345789999999999999999986
Q ss_pred cCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhccc
Q 000607 411 LPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 411 ~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
.|+++..+||+ |++.+|..++++|++|+++|||||+++++|||+|++++||+||+|.+..+|+||.||||
T Consensus 703 ----~Gika~~YHAG------Ls~eeR~~vqe~F~~Gei~VLVATdAFGMGIDkPDVR~VIHydlPkSiEsYyQriGRAG 772 (1195)
T PLN03137 703 ----FGHKAAFYHGS------MDPAQRAFVQKQWSKDEINIICATVAFGMGINKPDVRFVIHHSLPKSIEGYHQECGRAG 772 (1195)
T ss_pred ----CCCCeeeeeCC------CCHHHHHHHHHHHhcCCCcEEEEechhhcCCCccCCcEEEEcCCCCCHHHHHhhhcccC
Confidence 48899999997 79999999999999999999999999999999999999999999999999999999999
Q ss_pred CCC--CcEEEEEec
Q 000607 491 MQN--SDYLLMVKS 502 (1396)
Q Consensus 491 R~g--s~~i~lv~~ 502 (1396)
|.| +.+++++..
T Consensus 773 RDG~~g~cILlys~ 786 (1195)
T PLN03137 773 RDGQRSSCVLYYSY 786 (1195)
T ss_pred CCCCCceEEEEecH
Confidence 988 578888753
No 36
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=2.1e-32 Score=343.34 Aligned_cols=313 Identities=16% Similarity=0.186 Sum_probs=216.2
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
..+|++|.++++.++++ |+++++|||+|||+++++.+.. ....++|++|+++|+.||.+.++.. ++.+..
T Consensus 24 ~~~r~~Q~~ai~~il~g~dvlv~apTGsGKTl~y~lpal~--------~~g~tlVisPl~sL~~dqv~~l~~~-gi~~~~ 94 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGRDCLVVMPTGGGKSLCYQIPALV--------LDGLTLVVSPLISLMKDQVDQLLAN-GVAAAC 94 (607)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCchHHHHHHHHHHH--------cCCCEEEEecHHHHHHHHHHHHHHc-CCcEEE
Confidence 35899999999999997 8999999999999998865431 1346999999999999999999875 777777
Q ss_pred EeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHHHH---HHHHHhhc
Q 000607 99 YWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYACIM---TEFYHRLL 173 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im---~~f~~~~~ 173 (1396)
+.+....+.. ...+... ....+++++||+.+........+...++++||+||||++... |.++..+ ..+..
T Consensus 95 ~~s~~~~~~~-~~~~~~~~~g~~~il~~tPe~l~~~~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l~~--- 170 (607)
T PRK11057 95 LNSTQTREQQ-LEVMAGCRTGQIKLLYIAPERLMMDNFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQLRQ--- 170 (607)
T ss_pred EcCCCCHHHH-HHHHHHHhCCCCcEEEEChHHhcChHHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHHHH---
Confidence 7665432211 0112111 235789999999987422222334467999999999998753 3333222 22221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
. .+..++++||||+.... ... +...++-. .|......++. +...+
T Consensus 171 --~-~p~~~~v~lTAT~~~~~--------~~d---i~~~l~l~---------------~~~~~~~~~~r---~nl~~--- 215 (607)
T PRK11057 171 --R-FPTLPFMALTATADDTT--------RQD---IVRLLGLN---------------DPLIQISSFDR---PNIRY--- 215 (607)
T ss_pred --h-CCCCcEEEEecCCChhH--------HHH---HHHHhCCC---------------CeEEEECCCCC---Cccee---
Confidence 1 12345899999985421 111 11222100 00000000000 00000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 216 -------------------------------------------------------------------------------- 215 (607)
T PRK11057 216 -------------------------------------------------------------------------------- 215 (607)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
... . ...++..+...+.. ..+.++||||+++..++.++..|+.
T Consensus 216 --------------------~v~----~------~~~~~~~l~~~l~~---~~~~~~IIFc~tr~~~e~la~~L~~---- 258 (607)
T PRK11057 216 --------------------TLV----E------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQS---- 258 (607)
T ss_pred --------------------eee----e------ccchHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHh----
Confidence 000 0 01122233333333 3567899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |+.++|.+++++|++|+++|||||+++++|||+|++++||+||.|.|..+|+||.|||||.|
T Consensus 259 -~g~~v~~~Ha~------l~~~~R~~i~~~F~~g~~~VLVaT~a~~~GIDip~V~~VI~~d~P~s~~~y~Qr~GRaGR~G 331 (607)
T PRK11057 259 -RGISAAAYHAG------LDNDVRADVQEAFQRDDLQIVVATVAFGMGINKPNVRFVVHFDIPRNIESYYQETGRAGRDG 331 (607)
T ss_pred -CCCCEEEecCC------CCHHHHHHHHHHHHCCCCCEEEEechhhccCCCCCcCEEEEeCCCCCHHHHHHHhhhccCCC
Confidence 47899999987 79999999999999999999999999999999999999999999999999999999999988
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++++++..|
T Consensus 332 ~~~~~ill~~~~d 344 (607)
T PRK11057 332 LPAEAMLFYDPAD 344 (607)
T ss_pred CCceEEEEeCHHH
Confidence 57888887554
No 37
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=7.9e-32 Score=331.42 Aligned_cols=322 Identities=20% Similarity=0.256 Sum_probs=218.0
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---Ce
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~ 95 (1396)
..||+||.+++..++++ ++|+++|||+|||+++..+++.+.. ....++||||||++|+.||.+.++++.. ..
T Consensus 113 ~~~r~~Q~~av~~~l~~~~~il~apTGsGKT~i~~~l~~~~~~----~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 113 IEPHWYQYDAVYEGLKNNRRLLNLPTSAGKSLIQYLLSRYYLE----NYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred CCCCHHHHHHHHHHHhcCceEEEeCCCCCHHHHHHHHHHHHHh----cCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 57999999999999987 7999999999999998876654432 1233799999999999999999998763 33
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..+.|+... + .+.+|+|+|+|.+.+... ..++++++||+|||||+... .+..++..+-
T Consensus 189 ~~~i~~g~~~-------~----~~~~I~VaT~qsl~~~~~---~~~~~~~~iIvDEaH~~~~~-~~~~il~~~~------ 247 (501)
T PHA02558 189 MHKIYSGTAK-------D----TDAPIVVSTWQSAVKQPK---EWFDQFGMVIVDECHLFTGK-SLTSIITKLD------ 247 (501)
T ss_pred eeEEecCccc-------C----CCCCEEEeeHHHHhhchh---hhccccCEEEEEchhcccch-hHHHHHHhhh------
Confidence 4344444221 1 257999999999976542 23578999999999999864 4565554431
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc-cccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN-FIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~-~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
+.++++||||||..+... ...+...++...+.++..+.+.. +...+....+... .+.....
T Consensus 248 ---~~~~~lGLTATp~~~~~~---------~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~---~~~~~~~--- 309 (501)
T PHA02558 248 ---NCKFKFGLTGSLRDGKAN---------ILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLR---YPDEDRV--- 309 (501)
T ss_pred ---ccceEEEEeccCCCcccc---------HHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEecc---CCHHHhh---
Confidence 346799999999653321 22234455655554422222221 2222211111111 0100000
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.+. . +.|.
T Consensus 310 -~~~-----------~-----------------------------~~~~------------------------------- 317 (501)
T PHA02558 310 -KLK-----------G-----------------------------EDYQ------------------------------- 317 (501)
T ss_pred -hhc-----------c-----------------------------cchH-------------------------------
Confidence 000 0 0000
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
+....+.. ...+...+.+++.... ..+.+++||++++.+++.|++.|++.
T Consensus 318 ---~~~~~l~~----------------------~~~Rn~~I~~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~---- 367 (501)
T PHA02558 318 ---EEIKYITS----------------------HTKRNKWIANLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKV---- 367 (501)
T ss_pred ---HHHHHHhc----------------------cHHHHHHHHHHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHc----
Confidence 00000000 0122223333333322 24567899999999999999999973
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEe-cccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVAT-SILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaT-svleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+.++.++||. |+.++|..+++.|++|+..+|||| ++++||+|+|++++||.++++.+...|+||.||++|.+
T Consensus 368 -g~~v~~i~G~------~~~~eR~~i~~~~~~~~~~vLvaT~~~l~eG~Dip~ld~vIl~~p~~s~~~~~QriGR~~R~~ 440 (501)
T PHA02558 368 -YDKVYYVSGE------VDTEDRNEMKKIAEGGKGIIIVASYGVFSTGISIKNLHHVIFAHPSKSKIIVLQSIGRVLRKH 440 (501)
T ss_pred -CCCEEEEeCC------CCHHHHHHHHHHHhCCCCeEEEEEcceeccccccccccEEEEecCCcchhhhhhhhhccccCC
Confidence 7899999998 599999999999999999999998 89999999999999999999999999999999999976
No 38
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.6e-32 Score=301.88 Aligned_cols=326 Identities=23% Similarity=0.295 Sum_probs=235.4
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCC--cEEEEEeCCcccHHHHHHHHHHh--
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSP--FVAVFLVPKVVLVPQQAEAIKMH-- 91 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~--k~vl~LvPt~~Lv~Q~~~~i~~~-- 91 (1396)
....-.|.|...++..+++ +++|-++||||||+++++.+.++..+.. +.++ --++||+|||+|+.|..+++..|
T Consensus 25 GF~~mTpVQa~tIPlll~~KDVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~~ 104 (567)
T KOG0345|consen 25 GFEKMTPVQAATIPLLLKNKDVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFLE 104 (567)
T ss_pred CCcccCHHHHhhhHHHhcCCceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHHH
Confidence 3445789999999999987 8999999999999999998776653222 2222 36899999999999999988765
Q ss_pred --cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 --TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 --~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
.++++.++.|+..++. +.-.-.-+++.|+|+||++|.+++++. .+++..++++|+|||+++.+- .+..-+..
T Consensus 105 ~l~~l~~~l~vGG~~v~~---Di~~fkee~~nIlVgTPGRL~di~~~~~~~l~~rsLe~LVLDEADrLldm-gFe~~~n~ 180 (567)
T KOG0345|consen 105 HLPNLNCELLVGGRSVEE---DIKTFKEEGPNILVGTPGRLLDILQREAEKLSFRSLEILVLDEADRLLDM-GFEASVNT 180 (567)
T ss_pred hhhccceEEEecCccHHH---HHHHHHHhCCcEEEeCchhHHHHHhchhhhccccccceEEecchHhHhcc-cHHHHHHH
Confidence 3789999999976652 111122237889999999999999985 455669999999999999874 23333333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC-CCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY-DEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~-~~~~ 246 (1396)
.+.. .++..|.=++|||-... ...|.. .....|....+.-.. ...|
T Consensus 181 ILs~-----LPKQRRTGLFSATq~~~------------v~dL~r----------------aGLRNpv~V~V~~k~~~~tP 227 (567)
T KOG0345|consen 181 ILSF-----LPKQRRTGLFSATQTQE------------VEDLAR----------------AGLRNPVRVSVKEKSKSATP 227 (567)
T ss_pred HHHh-----cccccccccccchhhHH------------HHHHHH----------------hhccCceeeeecccccccCc
Confidence 3221 12233444569986431 111111 011111111110000 0011
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
+.+..
T Consensus 228 S~L~~--------------------------------------------------------------------------- 232 (567)
T KOG0345|consen 228 SSLAL--------------------------------------------------------------------------- 232 (567)
T ss_pred hhhcc---------------------------------------------------------------------------
Confidence 11000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.++ ...-..|+..|+++|.. ....+||||..+-..+++...+
T Consensus 233 ------------------~Y~-----------------v~~a~eK~~~lv~~L~~---~~~kK~iVFF~TCasVeYf~~~ 274 (567)
T KOG0345|consen 233 ------------------EYL-----------------VCEADEKLSQLVHLLNN---NKDKKCIVFFPTCASVEYFGKL 274 (567)
T ss_pred ------------------eee-----------------EecHHHHHHHHHHHHhc---cccccEEEEecCcchHHHHHHH
Confidence 000 00015788889999987 3678999999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
+..+. ....+..+||. |+++.|..++..|++..--+|+||+|+++|||||++++||.||+|.++.+|+||.
T Consensus 275 ~~~~l---~~~~i~~iHGK------~~q~~R~k~~~~F~~~~~~vl~~TDVaARGlDip~iD~VvQ~DpP~~~~~FvHR~ 345 (567)
T KOG0345|consen 275 FSRLL---KKREIFSIHGK------MSQKARAKVLEAFRKLSNGVLFCTDVAARGLDIPGIDLVVQFDPPKDPSSFVHRC 345 (567)
T ss_pred HHHHh---CCCcEEEecch------hcchhHHHHHHHHHhccCceEEeehhhhccCCCCCceEEEecCCCCChhHHHhhc
Confidence 98762 46788899998 7999999999999998888999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEec
Q 000607 487 GRARMQN--SDYLLMVKS 502 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~ 502 (1396)
||++|.| |..++|+.+
T Consensus 346 GRTaR~gr~G~Aivfl~p 363 (567)
T KOG0345|consen 346 GRTARAGREGNAIVFLNP 363 (567)
T ss_pred chhhhccCccceEEEecc
Confidence 9999988 678888764
No 39
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-33 Score=303.25 Aligned_cols=343 Identities=20% Similarity=0.190 Sum_probs=246.7
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHH-HH--HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSY-AY--LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l-~~--~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
....|.|.|.++.+.++.| ++|.++.||+|||+.+++. +-++ ++ .....++..+|++.||++|+.|..-+..++.
T Consensus 239 GFqKPtPIqSQaWPI~LQG~DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 239 GFQKPTPIQSQAWPILLQGIDLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred cCCCCCcchhcccceeecCcceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 3455999999999999998 8999999999999999872 2121 11 1123367789999999999999988888764
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+++..+++|+.+.. .+....-.+.+|+++||+.|.++...+.+++..+.++|+|||+++.+-.-.-+|++-++.
T Consensus 319 yng~ksvc~ygggnR~----eqie~lkrgveiiiatPgrlndL~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrkilld 394 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRN----EQIEDLKRGVEIIIATPGRLNDLQMDNVINLASITYLVLDEADRMLDMGFEPQIRKILLD 394 (629)
T ss_pred hcCcceEEEecCCCch----hHHHHHhcCceEEeeCCchHhhhhhcCeeeeeeeEEEEecchhhhhcccccHHHHHHhhh
Confidence 77777777764433 445566678999999999999999999999999999999999999975433444444331
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
..+-.+.+..|||=.. .+..|. +.+...+.. |..
T Consensus 395 ------iRPDRqtvmTSATWP~------------~VrrLa~sY~Kep~~v--------------------~vG------- 429 (629)
T KOG0336|consen 395 ------IRPDRQTVMTSATWPE------------GVRRLAQSYLKEPMIV--------------------YVG------- 429 (629)
T ss_pred ------cCCcceeeeecccCch------------HHHHHHHHhhhCceEE--------------------Eec-------
Confidence 1223356666777432 122231 111111110 100
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
.++...
T Consensus 430 -------------------------------------------------------------------------sLdL~a- 435 (629)
T KOG0336|consen 430 -------------------------------------------------------------------------SLDLVA- 435 (629)
T ss_pred -------------------------------------------------------------------------ccceee-
Confidence 000000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
..+..+.+-....+.|......++..+ ..+.++||||.++..|+-|..-|.-
T Consensus 436 --------------------------~~sVkQ~i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l 487 (629)
T KOG0336|consen 436 --------------------------VKSVKQNIIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCL 487 (629)
T ss_pred --------------------------eeeeeeeEEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhh
Confidence 000001111112266776665555554 5788999999999999988876652
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.|+....+||+. ++.+|+..++.|++|+++|||||+++++|||+|++.+|++||.|.|...|+||+||+
T Consensus 488 -----~gi~~q~lHG~r------~Q~DrE~al~~~ksG~vrILvaTDlaSRGlDv~DiTHV~NyDFP~nIeeYVHRvGrt 556 (629)
T KOG0336|consen 488 -----KGISSQSLHGNR------EQSDREMALEDFKSGEVRILVATDLASRGLDVPDITHVYNYDFPRNIEEYVHRVGRT 556 (629)
T ss_pred -----cccchhhccCCh------hhhhHHHHHHhhhcCceEEEEEechhhcCCCchhcceeeccCCCccHHHHHHHhccc
Confidence 689999999986 889999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHHH-HHHHHHHHHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSRL-ENYLASGNKMR 522 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~i-~~~~~~e~~m~ 522 (1396)
||.| +..+.++...|....+.+ +-+.+.|+..-
T Consensus 557 GRaGr~G~sis~lt~~D~~~a~eLI~ILe~aeQevP 592 (629)
T KOG0336|consen 557 GRAGRTGTSISFLTRNDWSMAEELIQILERAEQEVP 592 (629)
T ss_pred ccCCCCcceEEEEehhhHHHHHHHHHHHHHhhhhCc
Confidence 9998 678888888776655543 33334454443
No 40
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=3e-32 Score=345.65 Aligned_cols=446 Identities=15% Similarity=0.118 Sum_probs=246.8
Q ss_pred CcccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 18 TLPFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
..+.|.|||.+++..+++. ++|+++++|.|||..|++++..+.. .+..+++|||||+ .|+.||..++.+.+++
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~~~R~LLADEvGLGKTIeAglil~~l~~---~g~~~rvLIVvP~-sL~~QW~~El~~kF~l 224 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRHAPRVLLADEVGLGKTIEAGMIIHQQLL---TGRAERVLILVPE-TLQHQWLVEMLRRFNL 224 (956)
T ss_pred CCCCCCHHHHHHHHHHhhccCCCEEEEeCCcCcHHHHHHHHHHHHHH---cCCCCcEEEEcCH-HHHHHHHHHHHHHhCC
Confidence 3566999999999888763 7999999999999999998876633 3445689999999 9999999999887888
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh-hcCccccceeEEEEeccccccCC----C-cHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR-LSYFKLNMIKVLILDECHHARGK----H-QYACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~-~~~~~l~~i~llI~DEaH~~~~~----~-~~~~im~~f 168 (1396)
.+..+.++.....+... ...+...+++|+|++.+...-. ...+.-..|+++|+|||||+... . .|. .+..+
T Consensus 225 ~~~i~~~~~~~~~~~~~--~~pf~~~~~vI~S~~~l~~~~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~-~v~~L 301 (956)
T PRK04914 225 RFSLFDEERYAEAQHDA--DNPFETEQLVICSLDFLRRNKQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ-VVEQL 301 (956)
T ss_pred CeEEEcCcchhhhcccc--cCccccCcEEEEEHHHhhhCHHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH-HHHHH
Confidence 88777665322211110 0223367899999998875321 11222357999999999999832 1 122 22222
Q ss_pred HHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc----ccccCCcceeEeccCCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS----NFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~----~~~~~~~~~~~~y~~~~ 244 (1396)
....|++|+|||||..+... .+..+-+.|+...+. +...+. .|.+.........+...
T Consensus 302 --------a~~~~~~LLLTATP~q~~~~--------e~falL~lLdP~~f~--~~~~F~~e~~~~~~~a~~v~~l~~~~~ 363 (956)
T PRK04914 302 --------AEVIPGVLLLTATPEQLGQE--------SHFARLRLLDPDRFH--DYEAFVEEQQQYRPVADAVQALLAGEK 363 (956)
T ss_pred --------hhccCCEEEEEcCcccCCcH--------HHHHhhhhhCCCcCC--CHHHHHHHHHhhHHHHHHHHHHhcCCc
Confidence 13457899999999985432 233444666655543 122221 11000000000000000
Q ss_pred CchhhHHHHHHHHHHH-HHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH---HHHHHHHHhhccccchhh
Q 000607 245 IPHALYTHLADELAMI-ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVW---LALKAAETISCYESDFFA 320 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~---~a~~~~~~~~~~~~~~~~ 320 (1396)
........+...+..- ..+....+.... .. .......-++.+.... ..|.. .......-+......
T Consensus 364 ~~~~~~~~l~~ll~~~~~~~l~~~~~~~~-~~-~~~~~~~~i~~L~d~h-----g~~rvm~RntR~~v~~fp~R~~~--- 433 (956)
T PRK04914 364 LSDDALNALGELLGEQDIEPLLQAANSDS-EE-AQAARQELISELLDRH-----GTGRVLFRNTRAAVKGFPKRELH--- 433 (956)
T ss_pred CCHHHHHHHHHHhcccchhHHHhhhcccc-cc-cHHHHHHHHHHHHhhc-----CcceEEEeccHHhhcCCCcCcee---
Confidence 1111111111110000 000000000000 00 0000000011110000 00000 000000000000000
Q ss_pred hhhcccchHHHHHHHHH-HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHH
Q 000607 321 WEQLDGFGETIIKKFGS-DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVIT 399 (1396)
Q Consensus 321 ~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~t 399 (1396)
.-.+.... .. ..... .........+.... ... ...........++|+..|.++|+.. .+.|+||||+++.+
T Consensus 434 ~~~l~~~~-~y-~~~~~~~~~~~~~~~l~pe~--~~~-~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t 505 (956)
T PRK04914 434 PIPLPLPE-QY-QTAIKVSLEARARDMLYPEQ--IYQ-EFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAAT 505 (956)
T ss_pred EeecCCCH-HH-HHHHHHhHHHHHHhhcCHHH--HHH-HHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHH
Confidence 00000000 00 00000 00000000000000 000 0000000112379999999999874 47799999999999
Q ss_pred HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC--CeeEEEEecccccccCCCcccEEEEeCCCC
Q 000607 400 AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG--LVNVIVATSILEEGLDVQSCNLVIMFDPSR 477 (1396)
Q Consensus 400 a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g--~~nvLVaTsvleeGiDIp~~~lVI~fD~p~ 477 (1396)
+..|.+.|++. .|+++..+||+ |++.+|.++++.|+++ .++|||||++++||+|++.|++||+||+||
T Consensus 506 ~~~L~~~L~~~----~Gi~~~~ihG~------~s~~eR~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~ 575 (956)
T PRK04914 506 ALQLEQALRER----EGIRAAVFHEG------MSIIERDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF 575 (956)
T ss_pred HHHHHHHHhhc----cCeeEEEEECC------CCHHHHHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC
Confidence 99999999643 58999999997 7999999999999984 599999999999999999999999999999
Q ss_pred cHHHHHHhhhcccCCCC--cEEEEEecCCcchHHHHHHHHH
Q 000607 478 TVCSFIQSRGRARMQNS--DYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~gs--~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
|+..|+||+||++|.|+ .+.+.+..-.....+.+.+++.
T Consensus 576 nP~~~eQRIGR~~RiGQ~~~V~i~~~~~~~t~~e~i~~~~~ 616 (956)
T PRK04914 576 NPDLLEQRIGRLDRIGQKHDIQIHVPYLEGTAQERLFRWYH 616 (956)
T ss_pred CHHHHHHHhcccccCCCCceEEEEEccCCCCHHHHHHHHHh
Confidence 99999999999999985 2333332222234445555543
No 41
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=9.1e-32 Score=346.55 Aligned_cols=324 Identities=20% Similarity=0.272 Sum_probs=224.8
Q ss_pred cccchHHHHHHHHH-HhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc--CC
Q 000607 19 LPFARNYQLEALEN-ALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~-~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~ 94 (1396)
...|+|+|.++++. +..+ |+++++|||||||++|.++|..... ++++++||+|+++|+.|+++.++++. ++
T Consensus 21 ~~~l~p~Q~~ai~~~~~~g~nvlv~APTGSGKTlia~lail~~l~-----~~~kal~i~P~raLa~q~~~~~~~~~~~g~ 95 (737)
T PRK02362 21 IEELYPPQAEAVEAGLLDGKNLLAAIPTASGKTLIAELAMLKAIA-----RGGKALYIVPLRALASEKFEEFERFEELGV 95 (737)
T ss_pred CCcCCHHHHHHHHHHHhCCCcEEEECCCcchHHHHHHHHHHHHHh-----cCCcEEEEeChHHHHHHHHHHHHHhhcCCC
Confidence 44699999999998 4444 8999999999999999886543321 35679999999999999999999763 78
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC---cHHHHHHHHHHh
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH---QYACIMTEFYHR 171 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~ 171 (1396)
+++.++|+...+ ...+..++|+|+||+.+..+++++...+.+++++|+||||.+.+.. .+..++.....
T Consensus 96 ~v~~~tGd~~~~-------~~~l~~~~IiV~Tpek~~~llr~~~~~l~~v~lvViDE~H~l~d~~rg~~le~il~rl~~- 167 (737)
T PRK02362 96 RVGISTGDYDSR-------DEWLGDNDIIVATSEKVDSLLRNGAPWLDDITCVVVDEVHLIDSANRGPTLEVTLAKLRR- 167 (737)
T ss_pred EEEEEeCCcCcc-------ccccCCCCEEEECHHHHHHHHhcChhhhhhcCEEEEECccccCCCcchHHHHHHHHHHHh-
Confidence 999999986443 1224578999999999999888766667899999999999987532 12233333221
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
....++++|||||+.+ ...+..++++..+.. .+.+.+....+.+... ... .
T Consensus 168 -----~~~~~qii~lSATl~n-------------~~~la~wl~~~~~~~-------~~rpv~l~~~v~~~~~-~~~---~ 218 (737)
T PRK02362 168 -----LNPDLQVVALSATIGN-------------ADELADWLDAELVDS-------EWRPIDLREGVFYGGA-IHF---D 218 (737)
T ss_pred -----cCCCCcEEEEcccCCC-------------HHHHHHHhCCCcccC-------CCCCCCCeeeEecCCe-ecc---c
Confidence 1234789999999865 335667776543321 1111111111111100 000 0
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
..
T Consensus 219 --------------------------------------------------------------------------~~---- 220 (737)
T PRK02362 219 --------------------------------------------------------------------------DS---- 220 (737)
T ss_pred --------------------------------------------------------------------------cc----
Confidence 00
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
. ..+......+++..+.+.+. .+.++||||++|..+..++..|....
T Consensus 221 ----------------------~------~~~~~~~~~~~~~~~~~~~~-----~~~~~LVF~~sr~~~~~~a~~L~~~~ 267 (737)
T PRK02362 221 ----------------------Q------REVEVPSKDDTLNLVLDTLE-----EGGQCLVFVSSRRNAEGFAKRAASAL 267 (737)
T ss_pred ----------------------c------ccCCCccchHHHHHHHHHHH-----cCCCeEEEEeCHHHHHHHHHHHHHHh
Confidence 0 00000000223333444332 45789999999999998888776531
Q ss_pred CC-C-------------------C-----------CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccccc
Q 000607 412 PR-H-------------------C-----------TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEE 460 (1396)
Q Consensus 412 p~-~-------------------~-----------~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvlee 460 (1396)
.. . . ...+++.||+ |++.+|..+++.|++|.++|||||+++++
T Consensus 268 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~gva~hHag------l~~~eR~~ve~~Fr~G~i~VLvaT~tla~ 341 (737)
T PRK02362 268 KKTLTAAERAELAELAEEIREVSDTETSKDLADCVAKGAAFHHAG------LSREHRELVEDAFRDRLIKVISSTPTLAA 341 (737)
T ss_pred hhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHhCEEeecCC------CCHHHHHHHHHHHHcCCCeEEEechhhhh
Confidence 10 0 0 0134555554 89999999999999999999999999999
Q ss_pred ccCCCcccEEEE----eC-----CCCcHHHHHHhhhcccCCC----CcEEEEEe
Q 000607 461 GLDVQSCNLVIM----FD-----PSRTVCSFIQSRGRARMQN----SDYLLMVK 501 (1396)
Q Consensus 461 GiDIp~~~lVI~----fD-----~p~s~~~yiQr~GRA~R~g----s~~i~lv~ 501 (1396)
|+|+|+.++||+ || .|.+..+|.||.|||||.| |.++++..
T Consensus 342 GvnlPa~~VVI~~~~~yd~~~g~~~~s~~~y~Qm~GRAGR~g~d~~G~~ii~~~ 395 (737)
T PRK02362 342 GLNLPARRVIIRDYRRYDGGAGMQPIPVLEYHQMAGRAGRPGLDPYGEAVLLAK 395 (737)
T ss_pred hcCCCceEEEEecceeecCCCCceeCCHHHHHHHhhcCCCCCCCCCceEEEEec
Confidence 999999999997 87 5889999999999999987 45666664
No 42
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=8e-32 Score=349.27 Aligned_cols=329 Identities=19% Similarity=0.195 Sum_probs=214.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhcC---CCCcEEEEEeCCcccHHHHHHHHHH----
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLRK---PSPFVAVFLVPKVVLVPQQAEAIKM---- 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~~---~~~k~vl~LvPt~~Lv~Q~~~~i~~---- 90 (1396)
..|+++|.++++.++++ |+|+++|||||||++|.+.+. .+...... .++.++++|+|+++|+.|+++.+..
T Consensus 31 ~~~tpiQ~~Ai~~il~g~nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~l~~ 110 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGKNVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEPLTE 110 (876)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHHHHH
Confidence 34999999999999987 899999999999999998544 33221111 2456799999999999999876542
Q ss_pred ---h-------c-CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc--cccceeEEEEeccccccC
Q 000607 91 ---H-------T-DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF--KLNMIKVLILDECHHARG 157 (1396)
Q Consensus 91 ---~-------~-~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~--~l~~i~llI~DEaH~~~~ 157 (1396)
. . ++++...+|+...+ .........++|+|+||+.|..++....+ .+.++++||+||||++.+
T Consensus 111 i~~~~~~~g~~~~~i~v~v~~Gdt~~~----~r~~~l~~~p~IlVtTPE~L~~ll~~~~~~~~l~~l~~VVIDE~H~l~~ 186 (876)
T PRK13767 111 IREIAKERGEELPEIRVAIRTGDTSSY----EKQKMLKKPPHILITTPESLAILLNSPKFREKLRTVKWVIVDEIHSLAE 186 (876)
T ss_pred HHHHHHhcCCCcCCeeEEEEcCCCCHH----HHHHHHhCCCCEEEecHHHHHHHhcChhHHHHHhcCCEEEEechhhhcc
Confidence 1 1 56788899985433 11122234689999999999887765432 468899999999999985
Q ss_pred CCc---HHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCc
Q 000607 158 KHQ---YACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFST 234 (1396)
Q Consensus 158 ~~~---~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~ 234 (1396)
+.- +...+..+.. .....++++|||||+.+ ...+..++...... ..+++.
T Consensus 187 ~~RG~~l~~~L~rL~~-----l~~~~~q~IglSATl~~-------------~~~va~~L~~~~~~---------~~~r~~ 239 (876)
T PRK13767 187 NKRGVHLSLSLERLEE-----LAGGEFVRIGLSATIEP-------------LEEVAKFLVGYEDD---------GEPRDC 239 (876)
T ss_pred CccHHHHHHHHHHHHH-----hcCCCCeEEEEecccCC-------------HHHHHHHhcCcccc---------CCCCce
Confidence 421 1122222221 12345789999999854 22233333321100 000000
Q ss_pred ceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc
Q 000607 235 AKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCY 314 (1396)
Q Consensus 235 ~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~ 314 (1396)
. ++ .. ...... . + .+.. .
T Consensus 240 ~-iv--~~-~~~k~~-~-i-------------~v~~-p------------------------------------------ 257 (876)
T PRK13767 240 E-IV--DA-RFVKPF-D-I-------------KVIS-P------------------------------------------ 257 (876)
T ss_pred E-EE--cc-CCCccc-e-E-------------EEec-c------------------------------------------
Confidence 0 00 00 000000 0 0 0000 0
Q ss_pred ccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEe
Q 000607 315 ESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFV 394 (1396)
Q Consensus 315 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv 394 (1396)
..+. ..... .. ........|.+++. .+.++||||
T Consensus 258 ~~~l-----~~~~~--------------------------------~~----~~~~l~~~L~~~i~-----~~~~~LVF~ 291 (876)
T PRK13767 258 VDDL-----IHTPA--------------------------------EE----ISEALYETLHELIK-----EHRTTLIFT 291 (876)
T ss_pred Cccc-----ccccc--------------------------------ch----hHHHHHHHHHHHHh-----cCCCEEEEe
Confidence 0000 00000 00 00111222333332 346899999
Q ss_pred chHHHHHHHHHHHHhhcCC-CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEe
Q 000607 395 ERVITAIVLQSLLSELLPR-HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMF 473 (1396)
Q Consensus 395 ~~r~ta~~L~~~L~~~~p~-~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~f 473 (1396)
+++..|+.++..|++..+. +.+..+.+.||+ |++.+|..++++|++|++++||||+++++|||+|++++||+|
T Consensus 292 nTr~~ae~la~~L~~~~~~~~~~~~i~~hHg~------ls~~~R~~ve~~fk~G~i~vLVaTs~Le~GIDip~Vd~VI~~ 365 (876)
T PRK13767 292 NTRSGAERVLYNLRKRFPEEYDEDNIGAHHSS------LSREVRLEVEEKLKRGELKVVVSSTSLELGIDIGYIDLVVLL 365 (876)
T ss_pred CCHHHHHHHHHHHHHhchhhccccceeeeeCC------CCHHHHHHHHHHHHcCCCeEEEECChHHhcCCCCCCcEEEEe
Confidence 9999999999999874221 123567788886 799999999999999999999999999999999999999999
Q ss_pred CCCCcHHHHHHhhhcccCCC
Q 000607 474 DPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 474 D~p~s~~~yiQr~GRA~R~g 493 (1396)
|.|.+..+|+||.|||||.+
T Consensus 366 ~~P~sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 366 GSPKSVSRLLQRIGRAGHRL 385 (876)
T ss_pred CCCCCHHHHHHhcccCCCCC
Confidence 99999999999999999874
No 43
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=1.6e-31 Score=321.75 Aligned_cols=336 Identities=25% Similarity=0.328 Sum_probs=236.5
Q ss_pred CCCcccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 16 ADTLPFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 16 ~~~~~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
......+|+||.++++.+.+ + .+++++|||+|||++|+.+|..+ +..++||||+.+|+.||++.+.+
T Consensus 31 ~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~--------~~~~Lvlv~~~~L~~Qw~~~~~~ 102 (442)
T COG1061 31 VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAEL--------KRSTLVLVPTKELLDQWAEALKK 102 (442)
T ss_pred cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHh--------cCCEEEEECcHHHHHHHHHHHHH
Confidence 44456699999999999998 5 59999999999999999888765 22399999999999999999999
Q ss_pred hcCCe--EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHH
Q 000607 91 HTDLK--VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEF 168 (1396)
Q Consensus 91 ~~~~~--v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f 168 (1396)
+++.. ++.+.|+... +. ...|.|+|+|.+........+..+++++||||||||+..+ .|+.+...+
T Consensus 103 ~~~~~~~~g~~~~~~~~-------~~----~~~i~vat~qtl~~~~~l~~~~~~~~~liI~DE~Hh~~a~-~~~~~~~~~ 170 (442)
T COG1061 103 FLLLNDEIGIYGGGEKE-------LE----PAKVTVATVQTLARRQLLDEFLGNEFGLIIFDEVHHLPAP-SYRRILELL 170 (442)
T ss_pred hcCCccccceecCceec-------cC----CCcEEEEEhHHHhhhhhhhhhcccccCEEEEEccccCCcH-HHHHHHHhh
Confidence 88764 6666665211 11 1579999999998753222334457999999999999875 567676655
Q ss_pred HHhhccCCCCCCCe-EEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc-ccccCCcceeEeccCCCCc
Q 000607 169 YHRLLETGDSNLPR-IFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS-NFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~-ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~-~~~~~~~~~~~~y~~~~~~ 246 (1396)
.. ++ +|||||||...+.. .+..+...++..++...-.+.+. .+...+....+...... .
T Consensus 171 ~~----------~~~~LGLTATp~R~D~~--------~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~-~ 231 (442)
T COG1061 171 SA----------AYPRLGLTATPEREDGG--------RIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTE-D 231 (442)
T ss_pred hc----------ccceeeeccCceeecCC--------chhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccch-H
Confidence 42 34 99999999865533 26677788888888876666666 34433333222221110 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
+ ..............+.. .. . .+
T Consensus 232 -~-----~~~~~~~~~~~~~~~~~---------------------~~----~--~~------------------------ 254 (442)
T COG1061 232 -E-----EREYAKESARFRELLRA---------------------RG----T--LR------------------------ 254 (442)
T ss_pred -H-----HHHhhhhhhhhhhhhhh---------------------hh----h--hh------------------------
Confidence 0 00000000000000000 00 0 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.......+. .....|+..+..++..+. .+.+++||+..+.++..++..
T Consensus 255 ---------~~~~~~~~~---------------------~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~ 302 (442)
T COG1061 255 ---------AENEARRIA---------------------IASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKL 302 (442)
T ss_pred ---------HHHHHHHHh---------------------hccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHH
Confidence 000000000 001455566666666542 678999999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
+.. .++ +..++|.+ +..+|.+++++||.|++++||++.|+.||+|+|+++++|...+..|...|+||.
T Consensus 303 ~~~-----~~~-~~~it~~t------~~~eR~~il~~fr~g~~~~lv~~~vl~EGvDiP~~~~~i~~~~t~S~~~~~Q~l 370 (442)
T COG1061 303 FLA-----PGI-VEAITGET------PKEEREAILERFRTGGIKVLVTVKVLDEGVDIPDADVLIILRPTGSRRLFIQRL 370 (442)
T ss_pred hcC-----CCc-eEEEECCC------CHHHHHHHHHHHHcCCCCEEEEeeeccceecCCCCcEEEEeCCCCcHHHHHHHh
Confidence 885 345 88898986 899999999999999999999999999999999999999999999999999999
Q ss_pred hcccC
Q 000607 487 GRARM 491 (1396)
Q Consensus 487 GRA~R 491 (1396)
||.-|
T Consensus 371 GR~LR 375 (442)
T COG1061 371 GRGLR 375 (442)
T ss_pred hhhcc
Confidence 99988
No 44
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=100.00 E-value=4e-32 Score=303.09 Aligned_cols=331 Identities=18% Similarity=0.210 Sum_probs=238.3
Q ss_pred ccCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc--CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 14 VSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR--KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 14 ~~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~--~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..........+.|...+..++.+ |+++.+-||+|||+++++.+-++....+ ..++-.++|+||||+|+.|.+.+.++
T Consensus 97 i~~~GF~~MT~VQ~~ti~pll~gkDvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~ 176 (543)
T KOG0342|consen 97 IKEMGFETMTPVQQKTIPPLLEGKDVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKE 176 (543)
T ss_pred HHhcCccchhHHHHhhcCccCCCccceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHH
Confidence 33444556899999999999997 8999999999999999985544433222 22566799999999999999998886
Q ss_pred hc----CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCCcHHHHH
Q 000607 91 HT----DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 91 ~~----~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
.+ ++.++.+.|+.+.. ..-++....++|+|+||++|++.+++. .+-...+.++|+|||+|+.+- -+..-|
T Consensus 177 Ll~~h~~~~v~~viGG~~~~----~e~~kl~k~~niliATPGRLlDHlqNt~~f~~r~~k~lvlDEADrlLd~-GF~~di 251 (543)
T KOG0342|consen 177 LLKYHESITVGIVIGGNNFS----VEADKLVKGCNILIATPGRLLDHLQNTSGFLFRNLKCLVLDEADRLLDI-GFEEDV 251 (543)
T ss_pred HHhhCCCcceEEEeCCccch----HHHHHhhccccEEEeCCchHHhHhhcCCcchhhccceeEeecchhhhhc-ccHHHH
Confidence 53 67899999985443 233455558999999999999999864 233456689999999999964 233333
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEI 245 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~ 245 (1396)
..... ......+.+++|||-.. .+.+|+..-- .+....+.......
T Consensus 252 ~~Ii~-----~lpk~rqt~LFSAT~~~------------kV~~l~~~~L-----------------~~d~~~v~~~d~~~ 297 (543)
T KOG0342|consen 252 EQIIK-----ILPKQRQTLLFSATQPS------------KVKDLARGAL-----------------KRDPVFVNVDDGGE 297 (543)
T ss_pred HHHHH-----hccccceeeEeeCCCcH------------HHHHHHHHhh-----------------cCCceEeecCCCCC
Confidence 33322 12355678999999743 2333332110 00000111110000
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcc
Q 000607 246 PHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLD 325 (1396)
Q Consensus 246 ~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (1396)
.++
T Consensus 298 -~~T---------------------------------------------------------------------------- 300 (543)
T KOG0342|consen 298 -RET---------------------------------------------------------------------------- 300 (543)
T ss_pred -cch----------------------------------------------------------------------------
Confidence 000
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 326 GFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 326 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.+.+.+.+ .+ .....++..|..+|++.. ...++|||+.+...+...+.
T Consensus 301 --------------he~l~Qgy------vv----------~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~ 348 (543)
T KOG0342|consen 301 --------------HERLEQGY------VV----------APSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAE 348 (543)
T ss_pred --------------hhcccceE------Ee----------ccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHH
Confidence 00000000 00 001344677888888853 44899999999999999999
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHh
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQS 485 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr 485 (1396)
+|+.+ .+.|..+||. +++..|..+...|++.+.-|||||+|+++|+|+|+++.||.||+|.++.+||||
T Consensus 349 lL~~~-----dlpv~eiHgk------~~Q~kRT~~~~~F~kaesgIL~cTDVaARGlD~P~V~~VvQ~~~P~d~~~YIHR 417 (543)
T KOG0342|consen 349 LLNYI-----DLPVLEIHGK------QKQNKRTSTFFEFCKAESGILVCTDVAARGLDIPDVDWVVQYDPPSDPEQYIHR 417 (543)
T ss_pred HHhhc-----CCchhhhhcC------CcccccchHHHHHhhcccceEEecchhhccCCCCCceEEEEeCCCCCHHHHHHH
Confidence 99964 7889999998 589999999999999999999999999999999999999999999999999999
Q ss_pred hhcccCCC--CcEEEEEecC
Q 000607 486 RGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 486 ~GRA~R~g--s~~i~lv~~~ 503 (1396)
.||++|.| |..++++...
T Consensus 418 vGRTaR~gk~G~alL~l~p~ 437 (543)
T KOG0342|consen 418 VGRTAREGKEGKALLLLAPW 437 (543)
T ss_pred hccccccCCCceEEEEeChh
Confidence 99999987 5677776644
No 45
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.3e-31 Score=337.98 Aligned_cols=313 Identities=19% Similarity=0.210 Sum_probs=220.8
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
..+|++|.++++.++++ |++++||||+|||+++.+.+. . .+..++|++|+++|+.||.+.++.. ++.+..
T Consensus 12 ~~fr~~Q~~~i~~il~g~dvlv~~PTG~GKTl~y~lpal--~------~~g~~lVisPl~sL~~dq~~~l~~~-gi~~~~ 82 (591)
T TIGR01389 12 DDFRPGQEEIISHVLDGRDVLVVMPTGGGKSLCYQVPAL--L------LKGLTVVISPLISLMKDQVDQLRAA-GVAAAY 82 (591)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEcCCCccHhHHHHHHHH--H------cCCcEEEEcCCHHHHHHHHHHHHHc-CCcEEE
Confidence 35899999999999997 899999999999999976442 1 1346899999999999999999884 788888
Q ss_pred EeCCCCcccCCccchHHh-hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-CcHHHHH---HHHHHhhc
Q 000607 99 YWGDMGVDFWDGATWKEE-MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-HQYACIM---TEFYHRLL 173 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~-~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im---~~f~~~~~ 173 (1396)
+.|+...+... ..+... ....+|+++||+.+.+......+...++++|||||||++... |.++..+ ..+..
T Consensus 83 ~~s~~~~~~~~-~~~~~l~~~~~~il~~tpe~l~~~~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~~--- 158 (591)
T TIGR01389 83 LNSTLSAKEQQ-DIEKALVNGELKLLYVAPERLEQDYFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLAE--- 158 (591)
T ss_pred EeCCCCHHHHH-HHHHHHhCCCCCEEEEChhHhcChHHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHHH---
Confidence 88875433111 112222 246899999999987544444556678999999999998753 3332221 12221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....| ++++|||+... ... .+...++-. .+......++. +...
T Consensus 159 --~~~~~~-vi~lTAT~~~~--------~~~---~i~~~l~~~---------------~~~~~~~~~~r---~nl~---- 202 (591)
T TIGR01389 159 --RFPQVP-RIALTATADAE--------TRQ---DIRELLRLA---------------DANEFITSFDR---PNLR---- 202 (591)
T ss_pred --hCCCCC-EEEEEeCCCHH--------HHH---HHHHHcCCC---------------CCCeEecCCCC---CCcE----
Confidence 122345 99999998542 111 222222110 00000000000 0000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
T Consensus 203 -------------------------------------------------------------------------------- 202 (591)
T TIGR01389 203 -------------------------------------------------------------------------------- 202 (591)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
+... ....+...+.+.|... .+.++||||+++..++.++..|..
T Consensus 203 -------------------~~v~----------~~~~~~~~l~~~l~~~---~~~~~IIf~~sr~~~e~la~~L~~---- 246 (591)
T TIGR01389 203 -------------------FSVV----------KKNNKQKFLLDYLKKH---RGQSGIIYASSRKKVEELAERLES---- 246 (591)
T ss_pred -------------------EEEE----------eCCCHHHHHHHHHHhc---CCCCEEEEECcHHHHHHHHHHHHh----
Confidence 0000 0012334455555442 367899999999999999999986
Q ss_pred CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 414 HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 414 ~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||. |+.++|..++++|++|+++|||||+++++|||+|+++.||+||+|.|..+|+|+.|||||.|
T Consensus 247 -~g~~~~~~H~~------l~~~~R~~i~~~F~~g~~~vlVaT~a~~~GID~p~v~~VI~~~~p~s~~~y~Q~~GRaGR~G 319 (591)
T TIGR01389 247 -QGISALAYHAG------LSNKVRAENQEDFLYDDVKVMVATNAFGMGIDKPNVRFVIHYDMPGNLESYYQEAGRAGRDG 319 (591)
T ss_pred -CCCCEEEEECC------CCHHHHHHHHHHHHcCCCcEEEEechhhccCcCCCCCEEEEcCCCCCHHHHhhhhccccCCC
Confidence 47889999987 79999999999999999999999999999999999999999999999999999999999987
Q ss_pred --CcEEEEEecCC
Q 000607 494 --SDYLLMVKSGD 504 (1396)
Q Consensus 494 --s~~i~lv~~~~ 504 (1396)
+.++++++.+|
T Consensus 320 ~~~~~il~~~~~d 332 (591)
T TIGR01389 320 LPAEAILLYSPAD 332 (591)
T ss_pred CCceEEEecCHHH
Confidence 46777766543
No 46
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=8.7e-32 Score=299.34 Aligned_cols=367 Identities=19% Similarity=0.235 Sum_probs=224.9
Q ss_pred CCCcccchHHHHHHHHHHhc----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 16 ADTLPFARNYQLEALENALK----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 16 ~~~~~~~r~yQ~e~~~~~l~----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+......-|.|...+..++. ++++|.+|||||||+++++.|-.++.. |.-+.-|++||+||+.|+.|.+
T Consensus 154 k~~is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~-R~v~~LRavVivPtr~L~~QV~ 232 (620)
T KOG0350|consen 154 KMAISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSS-RPVKRLRAVVIVPTRELALQVY 232 (620)
T ss_pred HhhcccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHcc-CCccceEEEEEeeHHHHHHHHH
Confidence 34444567888888887753 479999999999999999977665331 1125678999999999999999
Q ss_pred HHHHHhc---CCeEEEEeCCCCcccCCccchHHhh-c----cCcEEEecHHHHHHhHhh-cCccccceeEEEEecccccc
Q 000607 86 EAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM-S----KHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 86 ~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~----~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~ 156 (1396)
++|..+. |+.|+...|...... + -.... . ..||+|+||++|.+.+.+ ..+.++++.++|+|||+++.
T Consensus 233 ~~f~~~~~~tgL~V~~~sgq~sl~~---E-~~qL~~~~~~~~~DIlVaTPGRLVDHl~~~k~f~Lk~LrfLVIDEADRll 308 (620)
T KOG0350|consen 233 DTFKRLNSGTGLAVCSLSGQNSLED---E-ARQLASDPPECRIDILVATPGRLVDHLNNTKSFDLKHLRFLVIDEADRLL 308 (620)
T ss_pred HHHHHhccCCceEEEecccccchHH---H-HHHHhcCCCccccceEEcCchHHHHhccCCCCcchhhceEEEechHHHHH
Confidence 9999875 788998888754321 1 11111 1 359999999999999984 56889999999999999998
Q ss_pred CCCcHHHHHHHHHHhhccCC--CCCCCeEEEEec--cCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccC
Q 000607 157 GKHQYACIMTEFYHRLLETG--DSNLPRIFGMTA--SPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPF 232 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~--~~~~p~ilgLTA--Tp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~ 232 (1396)
+. .|...+....... +.. ....-.||-+.- +|.. +..+...+ ....
T Consensus 309 ~q-sfQ~Wl~~v~~~~-~~~k~~~~~~nii~~~~~~~pt~-------------~~e~~t~~---------------~~~~ 358 (620)
T KOG0350|consen 309 DQ-SFQEWLDTVMSLC-KTMKRVACLDNIIRQRQAPQPTV-------------LSELLTKL---------------GKLY 358 (620)
T ss_pred HH-HHHHHHHHHHHHh-CCchhhcChhhhhhhcccCCchh-------------hHHHHhhc---------------CCcC
Confidence 63 4443332222110 000 000111222211 1111 11111111 0000
Q ss_pred CcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhh
Q 000607 233 STAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETIS 312 (1396)
Q Consensus 233 ~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~ 312 (1396)
|......+... + ......+.++. ..... ...
T Consensus 359 ~~l~kL~~sat-----L-sqdP~Kl~~l~----l~~Pr---------------------------------------l~~ 389 (620)
T KOG0350|consen 359 PPLWKLVFSAT-----L-SQDPSKLKDLT----LHIPR---------------------------------------LFH 389 (620)
T ss_pred chhHhhhcchh-----h-hcChHHHhhhh----cCCCc---------------------------------------eEE
Confidence 11000000000 0 00000000000 00000 000
Q ss_pred ccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEE
Q 000607 313 CYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCII 392 (1396)
Q Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~II 392 (1396)
-... +.+. +.+...+....-.....-|...+..++..+ +..++|+
T Consensus 390 v~~~---~~~r-----------------------------yslp~~l~~~~vv~~~~~kpl~~~~lI~~~---k~~r~lc 434 (620)
T KOG0350|consen 390 VSKP---LIGR-----------------------------YSLPSSLSHRLVVTEPKFKPLAVYALITSN---KLNRTLC 434 (620)
T ss_pred eecc---ccee-----------------------------eecChhhhhceeecccccchHhHHHHHHHh---hcceEEE
Confidence 0000 0000 000000000000000122444556666553 6789999
Q ss_pred EechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE
Q 000607 393 FVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 393 Fv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
|+++..++..|.+.|+-.... ..+++..+.|. ++.+.|.+.+++|+.|++|+||||+++++|||+-+++.||+
T Consensus 435 f~~S~~sa~Rl~~~L~v~~~~-~~~~~s~~t~~------l~~k~r~k~l~~f~~g~i~vLIcSD~laRGiDv~~v~~VIN 507 (620)
T KOG0350|consen 435 FVNSVSSANRLAHVLKVEFCS-DNFKVSEFTGQ------LNGKRRYKMLEKFAKGDINVLICSDALARGIDVNDVDNVIN 507 (620)
T ss_pred EecchHHHHHHHHHHHHHhcc-ccchhhhhhhh------hhHHHHHHHHHHHhcCCceEEEehhhhhcCCcccccceEee
Confidence 999999999999999933222 35666777776 58999999999999999999999999999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchH
Q 000607 473 FDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~ 508 (1396)
||+|.+..+|+||.||++|+| |.++.++...+...+
T Consensus 508 Yd~P~~~ktyVHR~GRTARAgq~G~a~tll~~~~~r~F 545 (620)
T KOG0350|consen 508 YDPPASDKTYVHRAGRTARAGQDGYAITLLDKHEKRLF 545 (620)
T ss_pred cCCCchhhHHHHhhcccccccCCceEEEeeccccchHH
Confidence 999999999999999999998 577777775544433
No 47
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=99.98 E-value=4.8e-31 Score=334.39 Aligned_cols=322 Identities=18% Similarity=0.235 Sum_probs=215.6
Q ss_pred CcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.|+++|.++++.+.++ |.++.+|||||||++|++.+..... .+.+++||+||++|+.|+++.+++
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~-----~g~q~lilaPT~~LA~Q~~~~l~~ 332 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIE-----AGYQAALMAPTEILAEQHYENLKK 332 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEeccHHHHHHHHHHHHH
Confidence 3456999999999999874 7999999999999999987654332 467899999999999999999998
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
.+ ++++..++|+...... ...+..... .++|+|+||+.+.+ .+.+.+++++|+||+|++... . .
T Consensus 333 l~~~~~i~v~ll~G~~~~~~r-~~~~~~l~~g~~~IvVgT~~ll~~-----~v~~~~l~lvVIDE~Hrfg~~-q-----r 400 (681)
T PRK10917 333 LLEPLGIRVALLTGSLKGKER-REILEAIASGEADIVIGTHALIQD-----DVEFHNLGLVIIDEQHRFGVE-Q-----R 400 (681)
T ss_pred HHhhcCcEEEEEcCCCCHHHH-HHHHHHHhCCCCCEEEchHHHhcc-----cchhcccceEEEechhhhhHH-H-----H
Confidence 65 6899999998654321 122333333 59999999987743 345789999999999997532 1 1
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
..+. .....|++++|||||.... + .+...-+-.+... .++.. ...|....+ ..
T Consensus 401 ~~l~-----~~~~~~~iL~~SATp~prt-----------l-~~~~~g~~~~s~i---~~~p~-~r~~i~~~~--~~---- 453 (681)
T PRK10917 401 LALR-----EKGENPHVLVMTATPIPRT-----------L-AMTAYGDLDVSVI---DELPP-GRKPITTVV--IP---- 453 (681)
T ss_pred HHHH-----hcCCCCCEEEEeCCCCHHH-----------H-HHHHcCCCceEEE---ecCCC-CCCCcEEEE--eC----
Confidence 1111 1123588999999996421 0 0100000000000 00000 000000000 00
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
T Consensus 454 -------------------------------------------------------------------------------- 453 (681)
T PRK10917 454 -------------------------------------------------------------------------------- 453 (681)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH--------H
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV--------I 398 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r--------~ 398 (1396)
..+...+.+.+.+.. .++.+++|||+.+ .
T Consensus 454 ------------------------------------------~~~~~~~~~~i~~~~-~~g~q~~v~~~~ie~s~~l~~~ 490 (681)
T PRK10917 454 ------------------------------------------DSRRDEVYERIREEI-AKGRQAYVVCPLIEESEKLDLQ 490 (681)
T ss_pred ------------------------------------------cccHHHHHHHHHHHH-HcCCcEEEEEcccccccchhHH
Confidence 000011112221110 2467899999854 3
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR- 477 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~- 477 (1396)
.+..+++.|.+.. .++++..+||. |++.+|.+++++|++|+++|||||+++|+|||+|++++||++|.|.
T Consensus 491 ~~~~~~~~L~~~~---~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GiDip~v~~VIi~~~~r~ 561 (681)
T PRK10917 491 SAEETYEELQEAF---PELRVGLLHGR------MKPAEKDAVMAAFKAGEIDILVATTVIEVGVDVPNATVMVIENAERF 561 (681)
T ss_pred HHHHHHHHHHHHC---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECcceeeCcccCCCcEEEEeCCCCC
Confidence 4566677777542 34789999998 7999999999999999999999999999999999999999999997
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEEecC-CcchHHHHHHHH
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMVKSG-DSTTQSRLENYL 515 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv~~~-~~~~~~~i~~~~ 515 (1396)
...++.|++||+||.| |.++++.... +....++++.+.
T Consensus 562 gls~lhQ~~GRvGR~g~~g~~ill~~~~~~~~~~~rl~~~~ 602 (681)
T PRK10917 562 GLAQLHQLRGRVGRGAAQSYCVLLYKDPLSETARERLKIMR 602 (681)
T ss_pred CHHHHHHHhhcccCCCCceEEEEEECCCCChhHHHHHHHHH
Confidence 5788999999999987 5666666422 223444444443
No 48
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.4e-31 Score=300.23 Aligned_cols=355 Identities=18% Similarity=0.219 Sum_probs=230.0
Q ss_pred CcccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHH-HHH------Hh----cCCCCcEEEEEeCCcccHHHH
Q 000607 18 TLPFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRS-YAY------LL----RKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~-l~~------~~----~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
.+..|.++|.-.++.|..+ +++-+++||||||+++...|.+ +.+ .+ ........||++|||+|+.|.
T Consensus 200 gFs~Pt~IQsl~lp~ai~gk~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV 279 (731)
T KOG0347|consen 200 GFSRPTEIQSLVLPAAIRGKVDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQV 279 (731)
T ss_pred CCCCCccchhhcccHhhccchhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHH
Confidence 3455889999999999997 8999999999999999876554 111 11 112334699999999999998
Q ss_pred HHHHHH---hcCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc---cccceeEEEEeccccccCC
Q 000607 85 AEAIKM---HTDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF---KLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 85 ~~~i~~---~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~---~l~~i~llI~DEaH~~~~~ 158 (1396)
.+.|.. .+++++..++|++.+. .+-+-.-...+|||+||++|+.++..+.. ++.++++||+||++++...
T Consensus 280 ~~Hl~ai~~~t~i~v~si~GGLavq----KQqRlL~~~p~IVVATPGRlweli~e~n~~l~~~k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 280 KQHLKAIAEKTQIRVASITGGLAVQ----KQQRLLNQRPDIVVATPGRLWELIEEDNTHLGNFKKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHHhccccCeEEEEeechhHHH----HHHHHHhcCCCEEEecchHHHHHHHhhhhhhhhhhhceEEEEccHHHHhhh
Confidence 887765 5689999999997654 22222333799999999999999986643 5688999999999999976
Q ss_pred CcHHHH---HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcc
Q 000607 159 HQYACI---MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTA 235 (1396)
Q Consensus 159 ~~~~~i---m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~ 235 (1396)
.-|... ++.... .......+.|.+|||..-..... +..... ..
T Consensus 356 ghF~Els~lL~~L~e----~~~~~qrQTlVFSATlt~~~~~~--------~~~~~k----------------~~------ 401 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNE----EQKNRQRQTLVFSATLTLVLQQP--------LSSSRK----------------KK------ 401 (731)
T ss_pred ccHHHHHHHHHHhhh----hhcccccceEEEEEEeehhhcCh--------hHHhhh----------------cc------
Confidence 444433 332221 12233456888999974422111 000000 00
Q ss_pred eeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccc
Q 000607 236 KFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYE 315 (1396)
Q Consensus 236 ~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~ 315 (1396)
. ........++.+.+ .+|...-
T Consensus 402 --------~----k~~~~~~kiq~Lmk-----------------------------------~ig~~~k----------- 423 (731)
T KOG0347|consen 402 --------D----KEDELNAKIQHLMK-----------------------------------KIGFRGK----------- 423 (731)
T ss_pred --------c----hhhhhhHHHHHHHH-----------------------------------HhCccCC-----------
Confidence 0 00001111111100 0000000
Q ss_pred cchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEec
Q 000607 316 SDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 316 ~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~ 395 (1396)
.. -+|...+.... .........+.+ ..|--.|.-+|.. -..++|||||
T Consensus 424 pk-----iiD~t~q~~ta------~~l~Es~I~C~~-----------------~eKD~ylyYfl~r----yPGrTlVF~N 471 (731)
T KOG0347|consen 424 PK-----IIDLTPQSATA------STLTESLIECPP-----------------LEKDLYLYYFLTR----YPGRTLVFCN 471 (731)
T ss_pred Ce-----eEecCcchhHH------HHHHHHhhcCCc-----------------cccceeEEEEEee----cCCceEEEec
Confidence 00 00100000000 000000000000 0000001111222 3579999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCC
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~ 475 (1396)
++..+..|+-+|+.+ ++.+..+|.. |.+++|.+.+++|++...-|||||+|+++|+|||.+.+||||-.
T Consensus 472 sId~vKRLt~~L~~L-----~i~p~~LHA~------M~QKqRLknLEkF~~~~~~VLiaTDVAARGLDIp~V~HVIHYqV 540 (731)
T KOG0347|consen 472 SIDCVKRLTVLLNNL-----DIPPLPLHAS------MIQKQRLKNLEKFKQSPSGVLIATDVAARGLDIPGVQHVIHYQV 540 (731)
T ss_pred hHHHHHHHHHHHhhc-----CCCCchhhHH------HHHHHHHHhHHHHhcCCCeEEEeehhhhccCCCCCcceEEEeec
Confidence 999999999999975 6778888876 89999999999999999999999999999999999999999999
Q ss_pred CCcHHHHHHhhhcccCCCC--cEEEEEecCCcchHHHH
Q 000607 476 SRTVCSFIQSRGRARMQNS--DYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 476 p~s~~~yiQr~GRA~R~gs--~~i~lv~~~~~~~~~~i 511 (1396)
|.+...|+||.||+.|+++ .-++|+..++...+.++
T Consensus 541 PrtseiYVHRSGRTARA~~~Gvsvml~~P~e~~~~~KL 578 (731)
T KOG0347|consen 541 PRTSEIYVHRSGRTARANSEGVSVMLCGPQEVGPLKKL 578 (731)
T ss_pred CCccceeEecccccccccCCCeEEEEeChHHhHHHHHH
Confidence 9999999999999999884 55666665544444333
No 49
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=99.97 E-value=7.5e-31 Score=335.15 Aligned_cols=306 Identities=20% Similarity=0.230 Sum_probs=211.3
Q ss_pred cccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 19 LPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.+.|+++|.++++.++++ |.++++|||+|||.+|+.++..... .+++++|||||++|+.|+++.+++.
T Consensus 449 ~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~-----~g~qvlvLvPT~~LA~Q~~~~f~~~ 523 (926)
T TIGR00580 449 PFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVL-----DGKQVAVLVPTTLLAQQHFETFKER 523 (926)
T ss_pred CCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHH-----hCCeEEEEeCcHHHHHHHHHHHHHH
Confidence 346899999999999873 7999999999999999876544322 3578999999999999999999976
Q ss_pred c---CCeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHH
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 ~---~~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~ 167 (1396)
+ ++++..++|..+.... ...+..... ..+|||+||..+ ...+.+.+++++|+||+|++...+ +.
T Consensus 524 ~~~~~i~v~~Lsg~~~~~e~-~~~~~~l~~g~~dIVIGTp~ll-----~~~v~f~~L~llVIDEahrfgv~~------~~ 591 (926)
T TIGR00580 524 FANFPVTIELLSRFRSAKEQ-NEILKELASGKIDILIGTHKLL-----QKDVKFKDLGLLIIDEEQRFGVKQ------KE 591 (926)
T ss_pred hccCCcEEEEEeccccHHHH-HHHHHHHHcCCceEEEchHHHh-----hCCCCcccCCEEEeecccccchhH------HH
Confidence 4 5788888887543211 111222222 589999999644 234668899999999999975321 11
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHH-HHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHD-LETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~-Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.+.. ....+++++|||||.... +.. +....+..+... .|..+. .+.
T Consensus 592 ~L~~-----~~~~~~vL~~SATpiprt-----------l~~~l~g~~d~s~I~~-----------~p~~R~------~V~ 638 (926)
T TIGR00580 592 KLKE-----LRTSVDVLTLSATPIPRT-----------LHMSMSGIRDLSIIAT-----------PPEDRL------PVR 638 (926)
T ss_pred HHHh-----cCCCCCEEEEecCCCHHH-----------HHHHHhcCCCcEEEec-----------CCCCcc------ceE
Confidence 1111 123578999999996521 100 000001001000 000000 000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..+..
T Consensus 639 t~v~~--------------------------------------------------------------------------- 643 (926)
T TIGR00580 639 TFVME--------------------------------------------------------------------------- 643 (926)
T ss_pred EEEEe---------------------------------------------------------------------------
Confidence 00000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHH-HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEK-IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K-v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
..... ...+...+ ..+.+++|||+++.++..+++
T Consensus 644 ----------------------------------------~~~~~i~~~i~~el-----~~g~qv~if~n~i~~~e~l~~ 678 (926)
T TIGR00580 644 ----------------------------------------YDPELVREAIRREL-----LRGGQVFYVHNRIESIEKLAT 678 (926)
T ss_pred ----------------------------------------cCHHHHHHHHHHHH-----HcCCeEEEEECCcHHHHHHHH
Confidence 00000 00011111 135689999999999999999
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-cHHHHHH
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVCSFIQ 484 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~~yiQ 484 (1396)
.|++.. .++++..+||. |++++|.+++++|++|+++|||||+++|+|||+|++++||++|.|. ...+|+|
T Consensus 679 ~L~~~~---p~~~v~~lHG~------m~~~eRe~im~~F~~Gk~~ILVaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Q 749 (926)
T TIGR00580 679 QLRELV---PEARIAIAHGQ------MTENELEEVMLEFYKGEFQVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQ 749 (926)
T ss_pred HHHHhC---CCCeEEEecCC------CCHHHHHHHHHHHHcCCCCEEEECChhhcccccccCCEEEEecCCCCCHHHHHH
Confidence 999753 35789999998 7999999999999999999999999999999999999999999875 5779999
Q ss_pred hhhcccCCC--CcEEEEEecC
Q 000607 485 SRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 485 r~GRA~R~g--s~~i~lv~~~ 503 (1396)
|+||+||.| +.++++++..
T Consensus 750 r~GRvGR~g~~g~aill~~~~ 770 (926)
T TIGR00580 750 LRGRVGRSKKKAYAYLLYPHQ 770 (926)
T ss_pred HhcCCCCCCCCeEEEEEECCc
Confidence 999999987 4666676543
No 50
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=4e-30 Score=329.49 Aligned_cols=318 Identities=19% Similarity=0.228 Sum_probs=216.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh--cCCeE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH--TDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~--~~~~v 96 (1396)
+.++++|.++++.+.++ |+++++|||||||++|.++|..... .++++++++|+++|+.|+++.++++ .+.++
T Consensus 21 ~~l~~~Q~~ai~~l~~~~nvlv~apTGSGKTl~a~lail~~l~-----~~~k~v~i~P~raLa~q~~~~~~~l~~~g~~v 95 (674)
T PRK01172 21 FELYDHQRMAIEQLRKGENVIVSVPTAAGKTLIAYSAIYETFL-----AGLKSIYIVPLRSLAMEKYEELSRLRSLGMRV 95 (674)
T ss_pred CCCCHHHHHHHHHHhcCCcEEEECCCCchHHHHHHHHHHHHHH-----hCCcEEEEechHHHHHHHHHHHHHHhhcCCeE
Confidence 45899999999999886 8999999999999999886654322 2467999999999999999999865 37788
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC---cHHHHHHHHHHhhc
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH---QYACIMTEFYHRLL 173 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~~~ 173 (1396)
+..+|+...+ ...+..++|+|+||+.+..++.+....+.+++++|+||||++.+.. .+..++....
T Consensus 96 ~~~~G~~~~~-------~~~~~~~dIiv~Tpek~~~l~~~~~~~l~~v~lvViDEaH~l~d~~rg~~le~ll~~~~---- 164 (674)
T PRK01172 96 KISIGDYDDP-------PDFIKRYDVVILTSEKADSLIHHDPYIINDVGLIVADEIHIIGDEDRGPTLETVLSSAR---- 164 (674)
T ss_pred EEEeCCCCCC-------hhhhccCCEEEECHHHHHHHHhCChhHHhhcCEEEEecchhccCCCccHHHHHHHHHHH----
Confidence 8888875432 2234578999999999998888766668899999999999987532 2223332221
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
......+++|||||+.+ ..++..++++..+.. .+.+.|....+.+......
T Consensus 165 --~~~~~~riI~lSATl~n-------------~~~la~wl~~~~~~~-------~~r~vpl~~~i~~~~~~~~------- 215 (674)
T PRK01172 165 --YVNPDARILALSATVSN-------------ANELAQWLNASLIKS-------NFRPVPLKLGILYRKRLIL------- 215 (674)
T ss_pred --hcCcCCcEEEEeCccCC-------------HHHHHHHhCCCccCC-------CCCCCCeEEEEEecCeeee-------
Confidence 11235789999999854 234566676543211 1112221111111100000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+...
T Consensus 216 -----------------------------------------------------------------------~~~~----- 219 (674)
T PRK01172 216 -----------------------------------------------------------------------DGYE----- 219 (674)
T ss_pred -----------------------------------------------------------------------cccc-----
Confidence 0000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
. . ... +..++.+. ..++.++||||+++..+..++..|.+..+.
T Consensus 220 --------------------~------~-------~~~---~~~~i~~~-~~~~~~vLVF~~sr~~~~~~a~~L~~~~~~ 262 (674)
T PRK01172 220 --------------------R------S-------QVD---INSLIKET-VNDGGQVLVFVSSRKNAEDYAEMLIQHFPE 262 (674)
T ss_pred --------------------c------c-------ccc---HHHHHHHH-HhCCCcEEEEeccHHHHHHHHHHHHHhhhh
Confidence 0 0 000 11111111 124568999999999999999888764321
Q ss_pred CCC--------------------ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE-
Q 000607 414 HCT--------------------WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM- 472 (1396)
Q Consensus 414 ~~~--------------------~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~- 472 (1396)
... ..+.+.||. |++.+|..+.+.|++|.++|||||+++++|+|+|+..+||.
T Consensus 263 ~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hag------l~~~eR~~ve~~f~~g~i~VLvaT~~la~Gvnipa~~VII~~ 336 (674)
T PRK01172 263 FNDFKVSSENNNVYDDSLNEMLPHGVAFHHAG------LSNEQRRFIEEMFRNRYIKVIVATPTLAAGVNLPARLVIVRD 336 (674)
T ss_pred cccccccccccccccHHHHHHHhcCEEEecCC------CCHHHHHHHHHHHHcCCCeEEEecchhhccCCCcceEEEEcC
Confidence 011 124455554 79999999999999999999999999999999999765552
Q ss_pred ---eC----CCCcHHHHHHhhhcccCCC----CcEEEEEe
Q 000607 473 ---FD----PSRTVCSFIQSRGRARMQN----SDYLLMVK 501 (1396)
Q Consensus 473 ---fD----~p~s~~~yiQr~GRA~R~g----s~~i~lv~ 501 (1396)
|+ .|.+..+|.||+|||||.| +..++++.
T Consensus 337 ~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~d~~g~~~i~~~ 376 (674)
T PRK01172 337 ITRYGNGGIRYLSNMEIKQMIGRAGRPGYDQYGIGYIYAA 376 (674)
T ss_pred ceEeCCCCceeCCHHHHHHHhhcCCCCCCCCcceEEEEec
Confidence 22 2568889999999999987 34556654
No 51
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=99.97 E-value=3.4e-30 Score=324.80 Aligned_cols=310 Identities=20% Similarity=0.270 Sum_probs=209.3
Q ss_pred CcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.|+++|.++++.++++ |.++.+|||||||.+|++.+..... .+.+++|++||++|+.|+++.+++
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~-----~g~qvlilaPT~~LA~Q~~~~~~~ 306 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIE-----AGYQVALMAPTEILAEQHYNSLRN 306 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEECCHHHHHHHHHHHHHH
Confidence 3456999999999998874 5899999999999999876654432 466899999999999999999998
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
.+ ++++..++|+.....+ ...|.... .+.+|+|+||..+.+ .+.+.+++++|+||+|++... ....+..
T Consensus 307 l~~~~gi~v~lltg~~~~~~r-~~~~~~i~~g~~~IiVgT~~ll~~-----~~~~~~l~lvVIDEaH~fg~~-qr~~l~~ 379 (630)
T TIGR00643 307 LLAPLGIEVALLTGSLKGKRR-KELLETIASGQIHLVVGTHALIQE-----KVEFKRLALVIIDEQHRFGVE-QRKKLRE 379 (630)
T ss_pred HhcccCcEEEEEecCCCHHHH-HHHHHHHhCCCCCEEEecHHHHhc-----cccccccceEEEechhhccHH-HHHHHHH
Confidence 75 6899999998654321 12233322 357999999997754 345788999999999997532 1111111
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
.. .....|++++|||||.... +...+..... ...+. ..+.....+..+.. .
T Consensus 380 ~~-------~~~~~~~~l~~SATp~prt--------------l~l~~~~~l~----~~~i~-~~p~~r~~i~~~~~---~ 430 (630)
T TIGR00643 380 KG-------QGGFTPHVLVMSATPIPRT--------------LALTVYGDLD----TSIID-ELPPGRKPITTVLI---K 430 (630)
T ss_pred hc-------ccCCCCCEEEEeCCCCcHH--------------HHHHhcCCcc----eeeec-cCCCCCCceEEEEe---C
Confidence 10 0112588999999996521 0000100000 00000 00000000000000 0
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.
T Consensus 431 ~------------------------------------------------------------------------------- 431 (630)
T TIGR00643 431 H------------------------------------------------------------------------------- 431 (630)
T ss_pred c-------------------------------------------------------------------------------
Confidence 0
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH--------H
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV--------I 398 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r--------~ 398 (1396)
..+ ..+.+.+.+. -.++.+++|||+.+ .
T Consensus 432 ------------------------------------------~~~-~~~~~~i~~~-l~~g~q~~v~~~~i~~s~~~~~~ 467 (630)
T TIGR00643 432 ------------------------------------------DEK-DIVYEFIEEE-IAKGRQAYVVYPLIEESEKLDLK 467 (630)
T ss_pred ------------------------------------------chH-HHHHHHHHHH-HHhCCcEEEEEccccccccchHH
Confidence 000 1111111110 02456788888765 4
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR- 477 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~- 477 (1396)
.+..+++.|.+.. .++++..+||. |+.++|.+++++|++|+.+|||||+++|+|||+|++++||++|.|.
T Consensus 468 ~a~~~~~~L~~~~---~~~~v~~lHG~------m~~~eR~~i~~~F~~g~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~ 538 (630)
T TIGR00643 468 AAEALYERLKKAF---PKYNVGLLHGR------MKSDEKEAVMEEFREGEVDILVATTVIEVGVDVPNATVMVIEDAERF 538 (630)
T ss_pred HHHHHHHHHHhhC---CCCcEEEEeCC------CCHHHHHHHHHHHHcCCCCEEEECceeecCcccCCCcEEEEeCCCcC
Confidence 5667777777542 46889999998 6999999999999999999999999999999999999999999987
Q ss_pred cHHHHHHhhhcccCCC--CcEEEEE
Q 000607 478 TVCSFIQSRGRARMQN--SDYLLMV 500 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--s~~i~lv 500 (1396)
+..+|.|++|||||.| |.++++.
T Consensus 539 gls~lhQ~~GRvGR~g~~g~~il~~ 563 (630)
T TIGR00643 539 GLSQLHQLRGRVGRGDHQSYCLLVY 563 (630)
T ss_pred CHHHHHHHhhhcccCCCCcEEEEEE
Confidence 6889999999999987 5666666
No 52
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.97 E-value=3.2e-31 Score=284.63 Aligned_cols=331 Identities=21% Similarity=0.244 Sum_probs=240.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHH--HHhc----CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYA--YLLR----KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~--~~~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
....|.|.|.+.++.++.| +.|-.+-||||||+++++.+--++ +... .+.++.-+|+||+++|+.|.++.+..
T Consensus 189 GI~~PTpIQvQGlPvvLsGRDmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~iie~ 268 (610)
T KOG0341|consen 189 GIVHPTPIQVQGLPVVLSGRDMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDIIEQ 268 (610)
T ss_pred CCCCCCceeecCcceEeecCceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHHHH
Confidence 3456899999999999998 899999999999999998433322 2222 34688899999999999999998887
Q ss_pred hc---------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---
Q 000607 91 HT---------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK--- 158 (1396)
Q Consensus 91 ~~---------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~--- 158 (1396)
+. .++..++.|+..+. .+.+..-.+.+|+|+||++|.++|....++++-..++.+|||+++.+-
T Consensus 269 ~~~~L~e~g~P~lRs~LciGG~~v~----eql~~v~~GvHivVATPGRL~DmL~KK~~sLd~CRyL~lDEADRmiDmGFE 344 (610)
T KOG0341|consen 269 YVAALQEAGYPELRSLLCIGGVPVR----EQLDVVRRGVHIVVATPGRLMDMLAKKIMSLDACRYLTLDEADRMIDMGFE 344 (610)
T ss_pred HHHHHHhcCChhhhhhhhhcCccHH----HHHHHHhcCeeEEEcCcchHHHHHHHhhccHHHHHHhhhhhHHHHhhccch
Confidence 64 25778888886654 455566678999999999999999999999999999999999999864
Q ss_pred CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeE
Q 000607 159 HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFK 238 (1396)
Q Consensus 159 ~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~ 238 (1396)
...+.|+..|. ...+.|++|||... +|......---+-.++
T Consensus 345 ddir~iF~~FK---------~QRQTLLFSATMP~------------KIQ~FAkSALVKPvtv------------------ 385 (610)
T KOG0341|consen 345 DDIRTIFSFFK---------GQRQTLLFSATMPK------------KIQNFAKSALVKPVTV------------------ 385 (610)
T ss_pred hhHHHHHHHHh---------hhhheeeeeccccH------------HHHHHHHhhcccceEE------------------
Confidence 23344444332 23468999999754 2222211000000000
Q ss_pred eccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccch
Q 000607 239 FYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDF 318 (1396)
Q Consensus 239 ~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~ 318 (1396)
......- . .++
T Consensus 386 NVGRAGA-----A----sld------------------------------------------------------------ 396 (610)
T KOG0341|consen 386 NVGRAGA-----A----SLD------------------------------------------------------------ 396 (610)
T ss_pred ecccccc-----c----chh------------------------------------------------------------
Confidence 0000000 0 000
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHH
Q 000607 319 FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ 398 (1396)
+.+.+.-.. ...|+-.|++-|.. ....++||++.+.
T Consensus 397 --------------------ViQevEyVk--------------------qEaKiVylLeCLQK----T~PpVLIFaEkK~ 432 (610)
T KOG0341|consen 397 --------------------VIQEVEYVK--------------------QEAKIVYLLECLQK----TSPPVLIFAEKKA 432 (610)
T ss_pred --------------------HHHHHHHHH--------------------hhhhhhhHHHHhcc----CCCceEEEecccc
Confidence 000000000 03455555565544 5678999999999
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT 478 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s 478 (1396)
.++.+.++|-- +|+.+..+||.. .+.+|...++.||.|+..|||||+|++.|+|+|++.+|||||+|..
T Consensus 433 DVD~IhEYLLl-----KGVEavaIHGGK------DQedR~~ai~afr~gkKDVLVATDVASKGLDFp~iqHVINyDMP~e 501 (610)
T KOG0341|consen 433 DVDDIHEYLLL-----KGVEAVAIHGGK------DQEDRHYAIEAFRAGKKDVLVATDVASKGLDFPDIQHVINYDMPEE 501 (610)
T ss_pred ChHHHHHHHHH-----ccceeEEeecCc------chhHHHHHHHHHhcCCCceEEEecchhccCCCccchhhccCCChHH
Confidence 99999998863 689999999986 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhcccCCC--CcEEEEEecCC-cchHHHHHHHH
Q 000607 479 VCSFIQSRGRARMQN--SDYLLMVKSGD-STTQSRLENYL 515 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g--s~~i~lv~~~~-~~~~~~i~~~~ 515 (1396)
..+|+||+||+||.| +-...|+.... ....-+++.++
T Consensus 502 IENYVHRIGRTGRsg~~GiATTfINK~~~esvLlDLK~LL 541 (610)
T KOG0341|consen 502 IENYVHRIGRTGRSGKTGIATTFINKNQEESVLLDLKHLL 541 (610)
T ss_pred HHHHHHHhcccCCCCCcceeeeeecccchHHHHHHHHHHH
Confidence 999999999999998 45666776432 22333444444
No 53
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=4.2e-30 Score=287.52 Aligned_cols=361 Identities=21% Similarity=0.304 Sum_probs=232.0
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHh----cCCCCcEEEEEeCCcccHHHHHHHHHHhcC--
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLL----RKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-- 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~----~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-- 93 (1396)
.|...|..+++.++++ +++|-++||||||+++++.|-+.+..+ ....|.-++||||||+||.|.++.+.+...
T Consensus 159 ~pTsVQkq~IP~lL~grD~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl~~~ 238 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGRDALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLLKPF 238 (708)
T ss_pred ccchHhhcchhhhhcCcceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHhcCc
Confidence 3889999999999998 799999999999999999665544422 234788899999999999999999998753
Q ss_pred --CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCC---CcHHHHHHH
Q 000607 94 --LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGK---HQYACIMTE 167 (1396)
Q Consensus 94 --~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~---~~~~~im~~ 167 (1396)
+-.+.+.|+.... ..-.+.-++..|+|+||++|+|.|.+. .+.++++..||||||+++..- ....+|++.
T Consensus 239 hWIVPg~lmGGEkkK----SEKARLRKGiNILIgTPGRLvDHLknT~~i~~s~LRwlVlDEaDrlleLGfekdit~Il~~ 314 (708)
T KOG0348|consen 239 HWIVPGVLMGGEKKK----SEKARLRKGINILIGTPGRLVDHLKNTKSIKFSRLRWLVLDEADRLLELGFEKDITQILKA 314 (708)
T ss_pred eEEeeceeecccccc----cHHHHHhcCceEEEcCchHHHHHHhccchheeeeeeEEEecchhHHHhccchhhHHHHHHH
Confidence 3334455553222 222344458999999999999998864 678899999999999999853 234444443
Q ss_pred HHHhhccC--CCCCCC---eEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEecc
Q 000607 168 FYHRLLET--GDSNLP---RIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 168 f~~~~~~~--~~~~~p---~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
. +..-+. .....| .-+++|||...+ +..|.. .|+..++...+...... . |+..
T Consensus 315 v-~~~~~~e~~~~~lp~q~q~mLlSATLtd~------------V~rLa~~sLkDpv~I~ld~s~~~~-~--p~~~----- 373 (708)
T KOG0348|consen 315 V-HSIQNAECKDPKLPHQLQNMLLSATLTDG------------VNRLADLSLKDPVYISLDKSHSQL-N--PKDK----- 373 (708)
T ss_pred H-hhccchhcccccccHHHHhHhhhhhhHHH------------HHHHhhccccCceeeeccchhhhc-C--cchh-----
Confidence 3 111000 111233 356889997542 223321 22322222111100000 0 0000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
.+.+.. -|+. ...
T Consensus 374 --------------a~~ev~-------------------------------------~~~~------------~~~---- 386 (708)
T KOG0348|consen 374 --------------AVQEVD-------------------------------------DGPA------------GDK---- 386 (708)
T ss_pred --------------hhhhcC-------------------------------------Cccc------------ccc----
Confidence 000000 0000 000
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccH--HHHHHHHHHhh-hcCCCCeeEEEEechHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTE--KIVCLIESLLE-YRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~--Kv~~L~~~L~~-~~~~~~~k~IIFv~~r~ 398 (1396)
++.. .+-+.+.+.+ -...+ ++-.|..+|.+ .......+.|||+.+.+
T Consensus 387 --l~~~----------~iPeqL~qry------------------~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d 436 (708)
T KOG0348|consen 387 --LDSF----------AIPEQLLQRY------------------TVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSD 436 (708)
T ss_pred --cccc----------cCcHHhhhce------------------EecCCchhHHHHHHHHHHHhhhhhhceeEEEEechh
Confidence 0000 0000010000 00122 23345555544 23345669999999999
Q ss_pred HHHHHHHHHHhhc----------CC-------CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 399 TAIVLQSLLSELL----------PR-------HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 399 ta~~L~~~L~~~~----------p~-------~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
.++.=+.+|.+.. |. +-+.++..+||. |++.+|..+++.|+...--||+||+|+++|
T Consensus 437 ~VeFHy~lf~~~l~~~~e~~s~~~~s~g~~~l~~~~k~~rLHGs------m~QeeRts~f~~Fs~~~~~VLLcTDVAaRG 510 (708)
T KOG0348|consen 437 SVEFHYSLFSEALLSHLEGSSGAPDSEGLPPLFMDLKFYRLHGS------MEQEERTSVFQEFSHSRRAVLLCTDVAARG 510 (708)
T ss_pred HHHHHHHHHHhhhhcccccccCCcccCCChhhhhcceEEEecCc------hhHHHHHHHHHhhccccceEEEehhhhhcc
Confidence 9998888887542 11 113455667776 899999999999999888899999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchHH
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQS 509 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~ 509 (1396)
+|+|.+.+||.||+|.+..+|+||+||+.|.| |..++|+...+.+...
T Consensus 511 LDlP~V~~vVQYd~P~s~adylHRvGRTARaG~kG~alLfL~P~Eaey~~ 560 (708)
T KOG0348|consen 511 LDLPHVGLVVQYDPPFSTADYLHRVGRTARAGEKGEALLFLLPSEAEYVN 560 (708)
T ss_pred CCCCCcCeEEEeCCCCCHHHHHHHhhhhhhccCCCceEEEecccHHHHHH
Confidence 99999999999999999999999999999988 6777777666444333
No 54
>PRK00254 ski2-like helicase; Provisional
Probab=99.97 E-value=1.4e-29 Score=325.56 Aligned_cols=325 Identities=21% Similarity=0.274 Sum_probs=216.8
Q ss_pred CcccchHHHHHHHHH-HhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh--cC
Q 000607 18 TLPFARNYQLEALEN-ALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH--TD 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~-~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~--~~ 93 (1396)
....++++|.++++. ++.+ |+++++|||||||++|.++|.... .+ ++.++++|+|+++|+.|+++.++.+ .+
T Consensus 20 g~~~l~~~Q~~ai~~~~~~g~nvlv~apTGsGKT~~~~l~il~~l--~~--~~~~~l~l~P~~aLa~q~~~~~~~~~~~g 95 (720)
T PRK00254 20 GIEELYPPQAEALKSGVLEGKNLVLAIPTASGKTLVAEIVMVNKL--LR--EGGKAVYLVPLKALAEEKYREFKDWEKLG 95 (720)
T ss_pred CCCCCCHHHHHHHHHHHhCCCcEEEECCCCcHHHHHHHHHHHHHH--Hh--cCCeEEEEeChHHHHHHHHHHHHHHhhcC
Confidence 345699999999986 4555 899999999999999987554321 11 3568999999999999999999864 47
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
+++..++|+...+ ..| ..+++|+|+||+.+..+++++...++++++||+||||.+...+. ...+......
T Consensus 96 ~~v~~~~Gd~~~~----~~~---~~~~~IiV~Tpe~~~~ll~~~~~~l~~l~lvViDE~H~l~~~~r-g~~le~il~~-- 165 (720)
T PRK00254 96 LRVAMTTGDYDST----DEW---LGKYDIIIATAEKFDSLLRHGSSWIKDVKLVVADEIHLIGSYDR-GATLEMILTH-- 165 (720)
T ss_pred CEEEEEeCCCCCc----hhh---hccCCEEEEcHHHHHHHHhCCchhhhcCCEEEEcCcCccCCccc-hHHHHHHHHh--
Confidence 8999999985432 223 35789999999999988887766678999999999999975422 2222222211
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
....++++|||||+.+ ...+..+++...+.. .+.+.|....+.+........
T Consensus 166 ---l~~~~qiI~lSATl~n-------------~~~la~wl~~~~~~~-------~~rpv~l~~~~~~~~~~~~~~----- 217 (720)
T PRK00254 166 ---MLGRAQILGLSATVGN-------------AEELAEWLNAELVVS-------DWRPVKLRKGVFYQGFLFWED----- 217 (720)
T ss_pred ---cCcCCcEEEEEccCCC-------------HHHHHHHhCCccccC-------CCCCCcceeeEecCCeeeccC-----
Confidence 1245799999999965 234556666543211 111111110111100000000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
... .
T Consensus 218 ------------------------------------------------------------------------~~~----~ 221 (720)
T PRK00254 218 ------------------------------------------------------------------------GKI----E 221 (720)
T ss_pred ------------------------------------------------------------------------cch----h
Confidence 000 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR 413 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~ 413 (1396)
. ........+.+.+. .+.++||||++|..+..++..|......
T Consensus 222 ~--------------------------------~~~~~~~~~~~~i~-----~~~~vLVF~~sr~~~~~~a~~l~~~~~~ 264 (720)
T PRK00254 222 R--------------------------------FPNSWESLVYDAVK-----KGKGALVFVNTRRSAEKEALELAKKIKR 264 (720)
T ss_pred c--------------------------------chHHHHHHHHHHHH-----hCCCEEEEEcChHHHHHHHHHHHHHHHH
Confidence 0 00001111222222 3568999999999988777666421000
Q ss_pred --------------------C--------CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 414 --------------------H--------CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 414 --------------------~--------~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
. -...+.+.||. |++++|..+.+.|++|.++|||||+++++|+|+|
T Consensus 265 ~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~hHag------l~~~eR~~ve~~F~~G~i~VLvaT~tLa~Gvnip 338 (720)
T PRK00254 265 FLTKPELRALKELADSLEENPTNEKLKKALRGGVAFHHAG------LGRTERVLIEDAFREGLIKVITATPTLSAGINLP 338 (720)
T ss_pred hcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEeCCC------CCHHHHHHHHHHHHCCCCeEEEeCcHHhhhcCCC
Confidence 0 01135566665 7999999999999999999999999999999999
Q ss_pred cccEEEE-------eCCCC-cHHHHHHhhhcccCCC----CcEEEEEecC
Q 000607 466 SCNLVIM-------FDPSR-TVCSFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~-------fD~p~-s~~~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
+.++||+ |+.|. +..+|.||.|||||.| |.+++++...
T Consensus 339 a~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~d~~G~~ii~~~~~ 388 (720)
T PRK00254 339 AFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKYDEVGEAIIVATTE 388 (720)
T ss_pred ceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCcCCCceEEEEecCc
Confidence 9999994 55544 4668999999999976 5677776543
No 55
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=1.3e-29 Score=281.35 Aligned_cols=327 Identities=23% Similarity=0.283 Sum_probs=244.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHH--HhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAY--LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~--~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.+|++.|-.+++.++.+ ++|-.+-||||||-+++..+ -++.+ .+..+.++..+|||||++|+.|...+.+++.
T Consensus 244 ~kptpiq~qalptalsgrdvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~K~y 323 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGRDVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFGKAY 323 (731)
T ss_pred ccCCcccccccccccccccchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhhhhc
Confidence 45899999999999998 79999999999999887633 22222 1233578899999999999999999999884
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--cHHHHHHHHHH
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--QYACIMTEFYH 170 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~f~~ 170 (1396)
++++..++|+.. .|.+ ...+-.++.||||||++|++++.-+-.++.++++||||||+++..-. +-.+-+...
T Consensus 324 gl~~v~~ygGgs--k~eQ--~k~Lk~g~EivVaTPgRlid~VkmKatn~~rvS~LV~DEadrmfdmGfe~qVrSI~~h-- 397 (731)
T KOG0339|consen 324 GLRVVAVYGGGS--KWEQ--SKELKEGAEIVVATPGRLIDMVKMKATNLSRVSYLVLDEADRMFDMGFEPQVRSIKQH-- 397 (731)
T ss_pred cceEEEeecCCc--HHHH--HHhhhcCCeEEEechHHHHHHHHhhcccceeeeEEEEechhhhhccccHHHHHHHHhh--
Confidence 789999999754 3433 23344689999999999999999999999999999999999998632 111112221
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHH-HHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLE-TLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le-~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
...-.+.|.++||-.. .|..|. ..|...+..+. -+.
T Consensus 398 ------irpdrQtllFsaTf~~------------kIe~lard~L~dpVrvVq------------------g~v------- 434 (731)
T KOG0339|consen 398 ------IRPDRQTLLFSATFKK------------KIEKLARDILSDPVRVVQ------------------GEV------- 434 (731)
T ss_pred ------cCCcceEEEeeccchH------------HHHHHHHHHhcCCeeEEE------------------eeh-------
Confidence 1233568999998532 344442 22322222110 000
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
.. ..+
T Consensus 435 ge---------------------------------------------------------------------------an~ 439 (731)
T KOG0339|consen 435 GE---------------------------------------------------------------------------ANE 439 (731)
T ss_pred hc---------------------------------------------------------------------------ccc
Confidence 00 000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
++.+.+ ..+ .....|+..|+.-|..+. ...++||||..+..++.+...|+-
T Consensus 440 --------dITQ~V-~V~------------------~s~~~Kl~wl~~~L~~f~--S~gkvlifVTKk~~~e~i~a~Lkl 490 (731)
T KOG0339|consen 440 --------DITQTV-SVC------------------PSEEKKLNWLLRHLVEFS--SEGKVLIFVTKKADAEEIAANLKL 490 (731)
T ss_pred --------chhhee-eec------------------cCcHHHHHHHHHHhhhhc--cCCcEEEEEeccCCHHHHHHHhcc
Confidence 000000 000 111568888888887763 567999999999999999999884
Q ss_pred hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcc
Q 000607 410 LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 410 ~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
+++++..+||+ |.+.+|.++|.+|+.+.+.|||||+|+.+|+|||+...||+||.-.+...|.||+||+
T Consensus 491 -----k~~~v~llhgd------kdqa~rn~~ls~fKkk~~~VlvatDvaargldI~~ikTVvnyD~ardIdththrigrt 559 (731)
T KOG0339|consen 491 -----KGFNVSLLHGD------KDQAERNEVLSKFKKKRKPVLVATDVAARGLDIPSIKTVVNYDFARDIDTHTHRIGRT 559 (731)
T ss_pred -----ccceeeeecCc------hhhHHHHHHHHHHhhcCCceEEEeeHhhcCCCccccceeecccccchhHHHHHHhhhc
Confidence 68999999998 6999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCC--CcEEEEEecCCcchHHH
Q 000607 490 RMQN--SDYLLMVKSGDSTTQSR 510 (1396)
Q Consensus 490 ~R~g--s~~i~lv~~~~~~~~~~ 510 (1396)
||.| +..+.++++.|....-.
T Consensus 560 gRag~kGvayTlvTeKDa~fAG~ 582 (731)
T KOG0339|consen 560 GRAGEKGVAYTLVTEKDAEFAGH 582 (731)
T ss_pred ccccccceeeEEechhhHHHhhH
Confidence 9998 67888888666554333
No 56
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.97 E-value=8.5e-30 Score=279.18 Aligned_cols=335 Identities=22% Similarity=0.249 Sum_probs=239.6
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHHHHHhc---CCCCcEEEEEeCCcccHHHHHHHHHHhc---
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSYAYLLR---KPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l~~~~~---~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.|.-.|..+++-+++| |+++.+-||||||.++++. +..++..-. ...+..+++||||++||.|.+.++.+..
T Consensus 41 kpTlIQs~aIplaLEgKDvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~~~c 120 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGKDVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLVEYC 120 (569)
T ss_pred CcchhhhcccchhhcCcceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHHHHH
Confidence 4788999999999998 8999999999999999984 444433221 2256789999999999999999998753
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC-ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY-FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~-~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
.+++..++.+++.. ..-....+.++|+|+||..++.++..+. ..++.++++|+|||+.+..- -|..-|+...
T Consensus 121 ~k~lr~~nl~s~~sds----v~~~~L~d~pdIvV~TP~~ll~~~~~~~~~~~~~l~~LVvDEADLllsf-GYeedlk~l~ 195 (569)
T KOG0346|consen 121 SKDLRAINLASSMSDS----VNSVALMDLPDIVVATPAKLLRHLAAGVLEYLDSLSFLVVDEADLLLSF-GYEEDLKKLR 195 (569)
T ss_pred HHhhhhhhhhcccchH----HHHHHHccCCCeEEeChHHHHHHHhhccchhhhheeeEEechhhhhhhc-ccHHHHHHHH
Confidence 35666666554432 1224455679999999999999999887 67888999999999998864 4666666554
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc--h
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP--H 247 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~--~ 247 (1396)
.. ..+.-+-++||||... .+..|..++- ..|.... ....+.+ +
T Consensus 196 ~~-----LPr~~Q~~LmSATl~d------------Dv~~LKkL~l----------------~nPviLk--l~e~el~~~d 240 (569)
T KOG0346|consen 196 SH-----LPRIYQCFLMSATLSD------------DVQALKKLFL----------------HNPVILK--LTEGELPNPD 240 (569)
T ss_pred Hh-----CCchhhheeehhhhhh------------HHHHHHHHhc----------------cCCeEEE--eccccCCCcc
Confidence 22 1234457899999743 2334433221 1121111 1110111 0
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.+.. +. +
T Consensus 241 qL~Q----------------------------------------------------------y~------------v--- 247 (569)
T KOG0346|consen 241 QLTQ----------------------------------------------------------YQ------------V--- 247 (569)
T ss_pred cceE----------------------------------------------------------EE------------E---
Confidence 0000 00 0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
......|...+.-+|+-- --..+.|||||+...+..|.-+|
T Consensus 248 -------------------------------------~cse~DKflllyallKL~--LI~gKsliFVNtIdr~YrLkLfL 288 (569)
T KOG0346|consen 248 -------------------------------------KCSEEDKFLLLYALLKLR--LIRGKSLIFVNTIDRCYRLKLFL 288 (569)
T ss_pred -------------------------------------EeccchhHHHHHHHHHHH--HhcCceEEEEechhhhHHHHHHH
Confidence 000133444444444331 12468999999999999999999
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-------------------------------
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS------------------------------- 456 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs------------------------------- 456 (1396)
.+. |++..++.|. |+...|.-+++.|..|-..++|||+
T Consensus 289 eqF-----GiksciLNse------LP~NSR~Hii~QFNkG~YdivIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~ 357 (569)
T KOG0346|consen 289 EQF-----GIKSCILNSE------LPANSRCHIIEQFNKGLYDIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKL 357 (569)
T ss_pred HHh-----CcHhhhhccc------ccccchhhHHHHhhCcceeEEEEccCccchhhhhccccccccccCCCCcccccccc
Confidence 975 8998889887 6899999999999999999999999
Q ss_pred ----ccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCCcchHHHHHHHHHHH
Q 000607 457 ----ILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLASG 518 (1396)
Q Consensus 457 ----vleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~~e 518 (1396)
-+++|||+..++.|||||+|.+..+||||+||++|.+ |..+.|+...+......++..+..+
T Consensus 358 D~E~GVsRGIDF~~V~~VlNFD~P~t~~sYIHRvGRTaRg~n~GtalSfv~P~e~~g~~~le~~~~d~ 425 (569)
T KOG0346|consen 358 DKESGVSRGIDFHHVSNVLNFDFPETVTSYIHRVGRTARGNNKGTALSFVSPKEEFGKESLESILKDE 425 (569)
T ss_pred CchhchhccccchheeeeeecCCCCchHHHHHhccccccCCCCCceEEEecchHHhhhhHHHHHHhhH
Confidence 1357999999999999999999999999999999987 5788888766555555666665554
No 57
>PRK10689 transcription-repair coupling factor; Provisional
Probab=99.97 E-value=4.1e-29 Score=326.14 Aligned_cols=310 Identities=18% Similarity=0.199 Sum_probs=207.6
Q ss_pred ccCCCcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH
Q 000607 14 VSADTLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE 86 (1396)
Q Consensus 14 ~~~~~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~ 86 (1396)
......+.|++.|.++++.++++ |+++++|||+|||.+|+.++..... .+++++|||||++|+.|+++
T Consensus 593 ~~~~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~-----~g~qvlvLvPT~eLA~Q~~~ 667 (1147)
T PRK10689 593 FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVE-----NHKQVAVLVPTTLLAQQHYD 667 (1147)
T ss_pred HHHhCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHH
Confidence 33444557999999999999873 7999999999999998865543321 46789999999999999999
Q ss_pred HHHHhc---CCeEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH
Q 000607 87 AIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA 162 (1396)
Q Consensus 87 ~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~ 162 (1396)
.+++.+ ++++..++|..+...+ ...|.... ...+|+|+||+.+. ..+.+.+++++|+||+|++... ..
T Consensus 668 ~f~~~~~~~~v~i~~l~g~~s~~e~-~~il~~l~~g~~dIVVgTp~lL~-----~~v~~~~L~lLVIDEahrfG~~--~~ 739 (1147)
T PRK10689 668 NFRDRFANWPVRIEMLSRFRSAKEQ-TQILAEAAEGKIDILIGTHKLLQ-----SDVKWKDLGLLIVDEEHRFGVR--HK 739 (1147)
T ss_pred HHHHhhccCCceEEEEECCCCHHHH-HHHHHHHHhCCCCEEEECHHHHh-----CCCCHhhCCEEEEechhhcchh--HH
Confidence 998754 5678888887543311 11222222 36899999997542 3456789999999999998432 12
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHH-HHHHhCCeEEeccChhhhcccccCCcceeEecc
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHD-LETLMNSKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~-Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
..++ .....+++++|||||.... +.. +....+..+... .|...
T Consensus 740 e~lk---------~l~~~~qvLl~SATpiprt-----------l~l~~~gl~d~~~I~~-----------~p~~r----- 783 (1147)
T PRK10689 740 ERIK---------AMRADVDILTLTATPIPRT-----------LNMAMSGMRDLSIIAT-----------PPARR----- 783 (1147)
T ss_pred HHHH---------hcCCCCcEEEEcCCCCHHH-----------HHHHHhhCCCcEEEec-----------CCCCC-----
Confidence 2221 1123568999999996521 100 001111111100 00000
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
.+.. .
T Consensus 784 ---~~v~---------------------~--------------------------------------------------- 788 (1147)
T PRK10689 784 ---LAVK---------------------T--------------------------------------------------- 788 (1147)
T ss_pred ---CCce---------------------E---------------------------------------------------
Confidence 0000 0
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAI 401 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~ 401 (1396)
. . ... ....-|.. ++.+. ..+.+++|||+++..+.
T Consensus 789 ------------------------~-------~------~~~--~~~~~k~~----il~el--~r~gqv~vf~n~i~~ie 823 (1147)
T PRK10689 789 ------------------------F-------V------REY--DSLVVREA----ILREI--LRGGQVYYLYNDVENIQ 823 (1147)
T ss_pred ------------------------E-------E------Eec--CcHHHHHH----HHHHH--hcCCeEEEEECCHHHHH
Confidence 0 0 000 00000111 11111 13468999999999999
Q ss_pred HHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCC-CcHH
Q 000607 402 VLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS-RTVC 480 (1396)
Q Consensus 402 ~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p-~s~~ 480 (1396)
.+++.|++..| ++++..+||. |++++|.+++.+|++|+++|||||+++|+|||+|++++||..+.. .+..
T Consensus 824 ~la~~L~~~~p---~~~v~~lHG~------m~q~eRe~im~~Fr~Gk~~VLVaTdIierGIDIP~v~~VIi~~ad~fgla 894 (1147)
T PRK10689 824 KAAERLAELVP---EARIAIGHGQ------MRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGLA 894 (1147)
T ss_pred HHHHHHHHhCC---CCcEEEEeCC------CCHHHHHHHHHHHHhcCCCEEEECchhhcccccccCCEEEEecCCCCCHH
Confidence 99999997633 5788999997 799999999999999999999999999999999999999944332 2455
Q ss_pred HHHHhhhcccCCC--CcEEEEEe
Q 000607 481 SFIQSRGRARMQN--SDYLLMVK 501 (1396)
Q Consensus 481 ~yiQr~GRA~R~g--s~~i~lv~ 501 (1396)
+|+|++||+||.| +.+++++.
T Consensus 895 q~~Qr~GRvGR~g~~g~a~ll~~ 917 (1147)
T PRK10689 895 QLHQLRGRVGRSHHQAYAWLLTP 917 (1147)
T ss_pred HHHHHhhccCCCCCceEEEEEeC
Confidence 8999999999988 34555554
No 58
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.97 E-value=2e-29 Score=286.48 Aligned_cols=329 Identities=16% Similarity=0.245 Sum_probs=245.5
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh----c
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH----T 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~----~ 92 (1396)
....|.+.|..+++.++.+ +.||.+-.|+|||+++..+... .+.........+|++|||+++.|..+.++.. .
T Consensus 44 ~f~~ptkiQaaAIP~~~~kmDliVQaKSGTGKTlVfsv~av~--sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~ 121 (980)
T KOG4284|consen 44 AFALPTKIQAAAIPAIFSKMDLIVQAKSGTGKTLVFSVLAVE--SLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFT 121 (980)
T ss_pred cccCCCchhhhhhhhhhcccceEEEecCCCCceEEEEeeeeh--hcCcccCcceeEEEecchhhhhHHHHHHHHhccccc
Confidence 3445789999999999998 9999999999999998764322 1122335677999999999999999999864 5
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
|+++..+.|+.... .-...+..++|+|+||+++..++..+.+++++++|+|+|||+.+.....++.-+...+..
T Consensus 122 g~~csvfIGGT~~~-----~d~~rlk~~rIvIGtPGRi~qL~el~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~s- 195 (980)
T KOG4284|consen 122 GARCSVFIGGTAHK-----LDLIRLKQTRIVIGTPGRIAQLVELGAMNMSHVRLFVLDEADKLMDTESFQDDINIIINS- 195 (980)
T ss_pred CcceEEEecCchhh-----hhhhhhhhceEEecCchHHHHHHHhcCCCccceeEEEeccHHhhhchhhHHHHHHHHHHh-
Confidence 89999999986543 224556689999999999999999999999999999999999999876777666666643
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
.....+++.+|||-..+- -..|...| ..|.... +..... .+..
T Consensus 196 ----lP~~rQv~a~SATYp~nL-----------dn~Lsk~m-----------------rdp~lVr--~n~~d~--~L~G- 238 (980)
T KOG4284|consen 196 ----LPQIRQVAAFSATYPRNL-----------DNLLSKFM-----------------RDPALVR--FNADDV--QLFG- 238 (980)
T ss_pred ----cchhheeeEEeccCchhH-----------HHHHHHHh-----------------cccceee--cccCCc--eeec-
Confidence 245668999999975421 11122222 2222111 111000 0000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
+ ++|...+..
T Consensus 239 i--------kQyv~~~~s-------------------------------------------------------------- 248 (980)
T KOG4284|consen 239 I--------KQYVVAKCS-------------------------------------------------------------- 248 (980)
T ss_pred h--------hheeeeccC--------------------------------------------------------------
Confidence 0 000000000
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
....-....-|++.|-+++++. +-.++||||+....|+-++..|+.
T Consensus 249 ----------------------------~nnsveemrlklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~s--- 294 (980)
T KOG4284|consen 249 ----------------------------PNNSVEEMRLKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKS--- 294 (980)
T ss_pred ----------------------------CcchHHHHHHHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhc---
Confidence 0000000134666677776663 567899999999999999999996
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.|+.|.++.|. |++++|..+++.+|+-.++|||+|+..++|||-+.+|+||+.|.|.+-..|.||+|||||-
T Consensus 295 --sG~d~~~ISga------M~Q~~Rl~a~~~lr~f~~rILVsTDLtaRGIDa~~vNLVVNiD~p~d~eTY~HRIGRAgRF 366 (980)
T KOG4284|consen 295 --SGLDVTFISGA------MSQKDRLLAVDQLRAFRVRILVSTDLTARGIDADNVNLVVNIDAPADEETYFHRIGRAGRF 366 (980)
T ss_pred --cCCCeEEeccc------cchhHHHHHHHHhhhceEEEEEecchhhccCCccccceEEecCCCcchHHHHHHhhhcccc
Confidence 59999999997 8999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC--cEEEEEecC
Q 000607 493 NS--DYLLMVKSG 503 (1396)
Q Consensus 493 gs--~~i~lv~~~ 503 (1396)
|+ -.+.++..+
T Consensus 367 G~~G~aVT~~~~~ 379 (980)
T KOG4284|consen 367 GAHGAAVTLLEDE 379 (980)
T ss_pred cccceeEEEeccc
Confidence 94 566777654
No 59
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=99.96 E-value=1.7e-27 Score=303.07 Aligned_cols=400 Identities=17% Similarity=0.215 Sum_probs=236.2
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-C
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-L 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-~ 94 (1396)
.+|+||.+++..++. + |+|+++++|.|||++++.++.++... .+..+.+|||||. .|+.||.++++++++ +
T Consensus 169 ~Lr~YQleGlnWLi~l~~~g~gGILADEMGLGKTlQaIalL~~L~~~--~~~~gp~LIVvP~-SlL~nW~~Ei~kw~p~l 245 (1033)
T PLN03142 169 KMRDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEY--RGITGPHMVVAPK-STLGNWMNEIRRFCPVL 245 (1033)
T ss_pred chHHHHHHHHHHHHHHHhcCCCEEEEeCCCccHHHHHHHHHHHHHHh--cCCCCCEEEEeCh-HHHHHHHHHHHHHCCCC
Confidence 589999999998863 3 79999999999999999888765432 2234568999999 788999999999875 6
Q ss_pred eEEEEeCCCCcccCCccchHH--hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCc-HHHHHHHHHHh
Q 000607 95 KVGKYWGDMGVDFWDGATWKE--EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQ-YACIMTEFYHR 171 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~--~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~-~~~im~~f~~~ 171 (1396)
++..++|..... ...... .....+|+|+||+.+..... .+.--.|++||+||||++++..+ ..+.++.+
T Consensus 246 ~v~~~~G~~~eR---~~~~~~~~~~~~~dVvITSYe~l~~e~~--~L~k~~W~~VIvDEAHrIKN~~Sklskalr~L--- 317 (1033)
T PLN03142 246 RAVKFHGNPEER---AHQREELLVAGKFDVCVTSFEMAIKEKT--ALKRFSWRYIIIDEAHRIKNENSLLSKTMRLF--- 317 (1033)
T ss_pred ceEEEeCCHHHH---HHHHHHHhcccCCCcceecHHHHHHHHH--HhccCCCCEEEEcCccccCCHHHHHHHHHHHh---
Confidence 888888863211 000111 12368999999999876432 33334689999999999987532 22223222
Q ss_pred hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
..++.++|||||+.++.. .+..|-+.+...++. +...+..+...+.. ........
T Consensus 318 -------~a~~RLLLTGTPlqNnl~--------ELwsLL~FL~P~~f~--s~~~F~~~f~~~~~--------~~~~e~i~ 372 (1033)
T PLN03142 318 -------STNYRLLITGTPLQNNLH--------ELWALLNFLLPEIFS--SAETFDEWFQISGE--------NDQQEVVQ 372 (1033)
T ss_pred -------hcCcEEEEecCCCCCCHH--------HHHHHHhcCCCCcCC--CHHHHHHHHccccc--------cchHHHHH
Confidence 235679999999987522 233333333332222 11112111111000 00000000
Q ss_pred HHHHH-----HHHHHHHHHhhhhh-------hchhhHHHHHHHHHH-HHHHHHHHHHHHhHHHHHHHHHHHHhhccccch
Q 000607 252 HLADE-----LAMIELKHTRSLEN-------LDLNEAQAELIRKKV-SKINSTLLYCLSELGVWLALKAAETISCYESDF 318 (1396)
Q Consensus 252 ~l~~~-----l~~l~~~~~~~l~~-------~~~~~~~~~~~~~~~-~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~ 318 (1396)
.+... +..........|.. ..+.. ..+.+ ..+...........+.
T Consensus 373 ~L~~~L~pf~LRR~KsdV~~~LPpK~e~iv~v~LS~-----~Qk~lY~~ll~k~~~~l~~g~~----------------- 430 (1033)
T PLN03142 373 QLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQ-----MQKQYYKALLQKDLDVVNAGGE----------------- 430 (1033)
T ss_pred HHHHHhhHHHhhhhHHHHhhhCCCceeEEEeeCCCH-----HHHHHHHHHHHHHHHHHhcccc-----------------
Confidence 11111 11111111111110 00000 00000 0000000000000000
Q ss_pred hhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEec
Q 000607 319 FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~ 395 (1396)
..-+..+...++..+.....+.......... ..-..|.|+..|.++|.... ..+.|+|||++
T Consensus 431 --------------~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~SgKl~lLdkLL~~Lk-~~g~KVLIFSQ 495 (1033)
T PLN03142 431 --------------RKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENSGKMVLLDKLLPKLK-ERDSRVLIFSQ 495 (1033)
T ss_pred --------------HHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhhhHHHHHHHHHHHHH-hcCCeEEeehh
Confidence 0000000011111110000000000000000 00123789999998888763 46789999999
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC---CeeEEEEecccccccCCCcccEEEE
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG---LVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g---~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
...+...|.+.|.. .++.+..++|.. +..+|+.++++|++. ...+|++|.++++|||++.+++||+
T Consensus 496 ft~~LdiLed~L~~-----~g~~y~rIdGst------s~~eRq~~Id~Fn~~~s~~~VfLLSTrAGGlGINLt~Ad~VIi 564 (1033)
T PLN03142 496 MTRLLDILEDYLMY-----RGYQYCRIDGNT------GGEDRDASIDAFNKPGSEKFVFLLSTRAGGLGINLATADIVIL 564 (1033)
T ss_pred HHHHHHHHHHHHHH-----cCCcEEEECCCC------CHHHHHHHHHHhccccCCceEEEEeccccccCCchhhCCEEEE
Confidence 99999999999985 478899999984 899999999999763 3468999999999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 473 FDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
||++||+....|+.|||.|.|+ .++.|+..+.
T Consensus 565 yD~dWNP~~d~QAidRaHRIGQkk~V~VyRLIt~gT 600 (1033)
T PLN03142 565 YDSDWNPQVDLQAQDRAHRIGQKKEVQVFRFCTEYT 600 (1033)
T ss_pred eCCCCChHHHHHHHHHhhhcCCCceEEEEEEEeCCc
Confidence 9999999999999999999996 3566776663
No 60
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=1e-27 Score=300.27 Aligned_cols=329 Identities=23% Similarity=0.288 Sum_probs=226.4
Q ss_pred cchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH--HhcCCeE
Q 000607 21 FARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK--MHTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~--~~~~~~v 96 (1396)
.+.+.|+++++....+ |+||++|||||||++|.+.|..-.. + .+.+++++||+++|+.|.++.++ ...|++|
T Consensus 31 el~~~qq~av~~~~~~~~N~li~aPTgsGKTlIA~lai~~~l~---~-~~~k~vYivPlkALa~Ek~~~~~~~~~~GirV 106 (766)
T COG1204 31 ELFNPQQEAVEKGLLSDENVLISAPTGSGKTLIALLAILSTLL---E-GGGKVVYIVPLKALAEEKYEEFSRLEELGIRV 106 (766)
T ss_pred HhhHHHHHHhhccccCCCcEEEEcCCCCchHHHHHHHHHHHHH---h-cCCcEEEEeChHHHHHHHHHHhhhHHhcCCEE
Confidence 6889999999887764 9999999999999999997654322 1 25679999999999999999999 5679999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC--CcH-HHHHHHHHHhhc
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK--HQY-ACIMTEFYHRLL 173 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~--~~~-~~im~~f~~~~~ 173 (1396)
+..+|+.... ...+.+++|+|+||+.+...+++...-+..++++|+||+|.+.+. .|- -.|..... .
T Consensus 107 ~~~TgD~~~~-------~~~l~~~~ViVtT~EK~Dsl~R~~~~~~~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~-~-- 176 (766)
T COG1204 107 GISTGDYDLD-------DERLARYDVIVTTPEKLDSLTRKRPSWIEEVDLVVIDEIHLLGDRTRGPVLESIVARMR-R-- 176 (766)
T ss_pred EEecCCcccc-------hhhhccCCEEEEchHHhhHhhhcCcchhhcccEEEEeeeeecCCcccCceehhHHHHHH-h--
Confidence 9999996544 355678999999999999999988777889999999999999865 222 22222222 1
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
.....||+|||||..+ ..++-.+++++.... .|.+.|-...+.+...-.
T Consensus 177 ---~~~~~rivgLSATlpN-------------~~evA~wL~a~~~~~-------~~rp~~l~~~v~~~~~~~-------- 225 (766)
T COG1204 177 ---LNELIRIVGLSATLPN-------------AEEVADWLNAKLVES-------DWRPVPLRRGVPYVGAFL-------- 225 (766)
T ss_pred ---hCcceEEEEEeeecCC-------------HHHHHHHhCCccccc-------CCCCcccccCCccceEEE--------
Confidence 1223799999999976 556778888865411 111111111111110000
Q ss_pred HHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 254 ADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
.
T Consensus 226 ----------------~--------------------------------------------------------------- 226 (766)
T COG1204 226 ----------------G--------------------------------------------------------------- 226 (766)
T ss_pred ----------------E---------------------------------------------------------------
Confidence 0
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc--
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL-- 411 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~-- 411 (1396)
..+ ... .. ...+-....+++... ...+.++||||++|..+...++.|....
T Consensus 227 --------------------~~~-~~k-~~----~~~~~~~~~~~v~~~-~~~~~qvLvFv~sR~~a~~~A~~l~~~~~~ 279 (766)
T COG1204 227 --------------------ADG-KKK-TW----PLLIDNLALELVLES-LAEGGQVLVFVHSRKEAEKTAKKLRIKMSA 279 (766)
T ss_pred --------------------ecC-ccc-cc----cccchHHHHHHHHHH-HhcCCeEEEEEecCchHHHHHHHHHHHHhh
Confidence 000 000 00 000011111111111 2467899999999999988888887311
Q ss_pred --CCC----CCceeeEE------------------ecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcc
Q 000607 412 --PRH----CTWKTKYI------------------AGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSC 467 (1396)
Q Consensus 412 --p~~----~~~~~~~l------------------~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~ 467 (1396)
... ......-+ .|-.-++++|+..+|.-+-+.||.|.++||+||+.++.|+|+|+-
T Consensus 280 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~GvafHhAGL~~~~R~~vE~~Fr~g~ikVlv~TpTLA~GVNLPA~ 359 (766)
T COG1204 280 TLSDDEKIVLDEGASPILIPETPTSEDEELAELVLRGVAFHHAGLPREDRQLVEDAFRKGKIKVLVSTPTLAAGVNLPAR 359 (766)
T ss_pred cCChhhhhhccccccccccccccccchHHHHHHHHhCccccccCCCHHHHHHHHHHHhcCCceEEEechHHhhhcCCcce
Confidence 000 00111111 122224578999999999999999999999999999999999998
Q ss_pred cEEE----EeC-----CCCcHHHHHHhhhcccCCC----CcEEEEE
Q 000607 468 NLVI----MFD-----PSRTVCSFIQSRGRARMQN----SDYLLMV 500 (1396)
Q Consensus 468 ~lVI----~fD-----~p~s~~~yiQr~GRA~R~g----s~~i~lv 500 (1396)
.+|| +|| .+-+.-+++|+.|||||.| +..+++.
T Consensus 360 ~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRPg~d~~G~~~i~~ 405 (766)
T COG1204 360 TVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRPGYDDYGEAIILA 405 (766)
T ss_pred EEEEeeeEEEcCCCCeEECchhhHhhccCcCCCCCcCCCCcEEEEe
Confidence 8888 688 5667889999999999998 3445554
No 61
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=3.6e-28 Score=261.58 Aligned_cols=330 Identities=17% Similarity=0.219 Sum_probs=226.6
Q ss_pred ccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 20 PFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
-.|...|..+++-++.. |.|..+..|+|||.++++.+..-.+ -.-..+.++.|+||++|+.|.-+++.+. ++
T Consensus 111 ~kPskIQe~aLPlll~~Pp~nlIaQsqsGtGKTaaFvL~MLsrvd--~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~ 188 (477)
T KOG0332|consen 111 QKPSKIQETALPLLLAEPPQNLIAQSQSGTGKTAAFVLTMLSRVD--PDVVVPQCICLAPTRELAPQTGEVVEEMGKFTE 188 (477)
T ss_pred CCcchHHHhhcchhhcCCchhhhhhhcCCCchhHHHHHHHHHhcC--ccccCCCceeeCchHHHHHHHHHHHHHhcCcee
Confidence 34788999999999984 9999999999999999876542211 1113456888899999999999888864 34
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-cCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-SYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
++.....-+... -+...-..+|++.||+++++.+.. ..+.++.+..+|+|||+++.+..-+...-...++
T Consensus 189 ita~yair~sk~-------~rG~~i~eqIviGTPGtv~Dlm~klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~-- 259 (477)
T KOG0332|consen 189 LTASYAIRGSKA-------KRGNKLTEQIVIGTPGTVLDLMLKLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMR-- 259 (477)
T ss_pred eeEEEEecCccc-------ccCCcchhheeeCCCccHHHHHHHHHhhChhhceEEEecchhhhhhcccccccchhhhh--
Confidence 444433332111 122223579999999999998887 7888999999999999999864211111111110
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
...+.-+++.+|||-... .... ....++.+....+.-....
T Consensus 260 ---~lP~~~QllLFSATf~e~------------V~~F----------------a~kivpn~n~i~Lk~eel~-------- 300 (477)
T KOG0332|consen 260 ---SLPRNQQLLLFSATFVEK------------VAAF----------------ALKIVPNANVIILKREELA-------- 300 (477)
T ss_pred ---hcCCcceEEeeechhHHH------------HHHH----------------HHHhcCCCceeeeehhhcc--------
Confidence 112345788999985321 1111 0111122221111000000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
|.
T Consensus 301 ---------------L~--------------------------------------------------------------- 302 (477)
T KOG0332|consen 301 ---------------LD--------------------------------------------------------------- 302 (477)
T ss_pred ---------------cc---------------------------------------------------------------
Confidence 00
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.+.+.. +.-.....|.+.|.++... -.-.+.||||.++.+|..|+..+..
T Consensus 303 ---------~IkQly---------------v~C~~~~~K~~~l~~lyg~---~tigqsiIFc~tk~ta~~l~~~m~~--- 352 (477)
T KOG0332|consen 303 ---------NIKQLY---------------VLCACRDDKYQALVNLYGL---LTIGQSIIFCHTKATAMWLYEEMRA--- 352 (477)
T ss_pred ---------chhhhe---------------eeccchhhHHHHHHHHHhh---hhhhheEEEEeehhhHHHHHHHHHh---
Confidence 000000 0001115677777775433 2456789999999999999999986
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC------cHHHHHHhh
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR------TVCSFIQSR 486 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~------s~~~yiQr~ 486 (1396)
.|..+.++||+ |+-.+|..++++||.|..+|||+|+|.++|||++.+++||+||+|. .+..|+||+
T Consensus 353 --~Gh~V~~l~G~------l~~~~R~~ii~~Fr~g~~kVLitTnV~ARGiDv~qVs~VvNydlP~~~~~~pD~etYlHRi 424 (477)
T KOG0332|consen 353 --EGHQVSLLHGD------LTVEQRAAIIDRFREGKEKVLITTNVCARGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRI 424 (477)
T ss_pred --cCceeEEeecc------chhHHHHHHHHHHhcCcceEEEEechhhcccccceEEEEEecCCccccCCCCCHHHHHHHh
Confidence 48999999998 6889999999999999999999999999999999999999999996 578999999
Q ss_pred hcccCCC--CcEEEEEecCC-cchHHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGD-STTQSRLENYL 515 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~-~~~~~~i~~~~ 515 (1396)
||+||-| |-.+.|++.++ ......|+++.
T Consensus 425 GRtGRFGkkG~a~n~v~~~~s~~~mn~iq~~F 456 (477)
T KOG0332|consen 425 GRTGRFGKKGLAINLVDDKDSMNIMNKIQKHF 456 (477)
T ss_pred cccccccccceEEEeecccCcHHHHHHHHHHH
Confidence 9999988 56778887554 33445666655
No 62
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=1.7e-27 Score=294.71 Aligned_cols=303 Identities=17% Similarity=0.175 Sum_probs=197.0
Q ss_pred ccchHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-----
Q 000607 20 PFARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----- 92 (1396)
+.|++||.++++.++.|+ +++.+|||||||.++...+..+ .......++++++|||++|+.|.++.++++.
T Consensus 14 ~~PtpiQ~~~i~~il~G~~~v~~~apTGSGKTaa~aafll~~--~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~~ 91 (844)
T TIGR02621 14 YSPFPWQLSLAERFVAGQPPESCSTPTGLGKTSIIAAWLLAV--EIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLPD 91 (844)
T ss_pred CCCCHHHHHHHHHHHcCCCcceEecCCCCcccHHHHHhhccc--cccccccceEEEeCchHHHHHHHHHHHHHHHHHhcc
Confidence 449999999999999973 7778999999998543211111 1112234567778899999999999888653
Q ss_pred ---------------------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCc------------
Q 000607 93 ---------------------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF------------ 139 (1396)
Q Consensus 93 ---------------------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~------------ 139 (1396)
++++..++|+...+ .+|.....+++|||+|++.+ .++.+
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~----~q~~~l~~~p~IIVgT~D~i----~sr~L~~gYg~~~~~~p 163 (844)
T TIGR02621 92 VPEVEAALWALCSTRPEKKDRPLAISTLRGQFADN----DEWMLDPHRPAVIVGTVDMI----GSRLLFSGYGCGFKSRP 163 (844)
T ss_pred cchhhhhhhhhhccccccccCCeEEEEEECCCChH----HHHHhcCCCCcEEEECHHHH----cCCcccccccccccccc
Confidence 37788899986544 67888878899999996444 33333
Q ss_pred ----cccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC-CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC
Q 000607 140 ----KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL-PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN 214 (1396)
Q Consensus 140 ----~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~-p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~ 214 (1396)
.++++++||+||||.. ..+...+........ ...... .++++||||+... +..+...+.
T Consensus 164 i~ag~L~~v~~LVLDEADLd---~gF~~~l~~Il~~l~-rp~~~rprQtLLFSAT~p~e------------i~~l~~~~~ 227 (844)
T TIGR02621 164 LHAGFLGQDALIVHDEAHLE---PAFQELLKQIMNEQQ-RPPDFLPLRVVELTATSRTD------------GPDRTTLLS 227 (844)
T ss_pred chhhhhccceEEEEehhhhc---cccHHHHHHHHHhcc-cCcccccceEEEEecCCCcc------------HHHHHHHHc
Confidence 2678999999999922 245555555443210 011112 3799999998531 112211111
Q ss_pred -CeEE-eccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHH
Q 000607 215 -SKVY-TCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTL 292 (1396)
Q Consensus 215 -~~i~-~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 292 (1396)
.... .+ ..+.... ..+..|-.
T Consensus 228 ~~p~~i~V-----~~~~l~a--~ki~q~v~-------------------------------------------------- 250 (844)
T TIGR02621 228 AEDYKHPV-----LKKRLAA--KKIVKLVP-------------------------------------------------- 250 (844)
T ss_pred cCCceeec-----ccccccc--cceEEEEe--------------------------------------------------
Confidence 1000 00 0000000 00000000
Q ss_pred HHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHH
Q 000607 293 LYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI 372 (1396)
Q Consensus 293 ~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv 372 (1396)
. ....|+
T Consensus 251 ---------------------------------v----------------------------------------~~e~Kl 257 (844)
T TIGR02621 251 ---------------------------------P----------------------------------------SDEKFL 257 (844)
T ss_pred ---------------------------------c----------------------------------------ChHHHH
Confidence 0 001111
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHH-----HHHHHHhc-
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQN-----EIVEEFRR- 446 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~-----~~l~~Fr~- 446 (1396)
..++..+.......+.++||||+++..|..+++.|++. ++ ..+||. |++.+|. +++++|++
T Consensus 258 ~~lv~~L~~ll~e~g~~vLVF~NTv~~Aq~L~~~L~~~-----g~--~lLHG~------m~q~dR~~~~~~~il~~Fk~~ 324 (844)
T TIGR02621 258 STMVKELNLLMKDSGGAILVFCRTVKHVRKVFAKLPKE-----KF--ELLTGT------LRGAERDDLVKKEIFNRFLPQ 324 (844)
T ss_pred HHHHHHHHHHHhhCCCcEEEEECCHHHHHHHHHHHHhc-----CC--eEeeCC------CCHHHHhhHHHHHHHHHHhcc
Confidence 11111111111124678999999999999999999863 44 789997 7999999 88999987
Q ss_pred ---CC-------eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 447 ---GL-------VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 447 ---g~-------~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
|+ .+|||||+++|+||||+. ++||+++.| ..+|+||.||++|.|.
T Consensus 325 ~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~aP--~esyIQRiGRtgR~G~ 379 (844)
T TIGR02621 325 MLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLAP--FESMQQRFGRVNRFGE 379 (844)
T ss_pred ccccccccccccceEEeccchhhhcccCCc-ceEEECCCC--HHHHHHHhcccCCCCC
Confidence 54 789999999999999986 899998877 5899999999999873
No 63
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=8.5e-28 Score=275.40 Aligned_cols=344 Identities=20% Similarity=0.224 Sum_probs=235.4
Q ss_pred cCCCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHH-HHHHHhc--CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 15 SADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLR-SYAYLLR--KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~-~l~~~~~--~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.......|.+.|.+++...+.+ |++.++|||||||+.+.+.|- ++....+ ...+-+++|+.||++|+.|.+.++++
T Consensus 152 ~~~~F~~Pt~iq~~aipvfl~~r~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k 231 (593)
T KOG0344|consen 152 QELGFDEPTPIQKQAIPVFLEKRDVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRK 231 (593)
T ss_pred hhCCCCCCCcccchhhhhhhcccceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHh
Confidence 3344556999999999999987 899999999999999998543 3322221 23577899999999999999999998
Q ss_pred hc-----CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCCCcHHH
Q 000607 91 HT-----DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGKHQYAC 163 (1396)
Q Consensus 91 ~~-----~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~ 163 (1396)
+. ++++..+......+. ..-......++|+|.||-.+..++..+. +.+..+..+|+|||+++.+...+..
T Consensus 232 ~~~~~~t~~~a~~~~~~~~~~q---k~a~~~~~k~dili~TP~ri~~~~~~~~~~idl~~V~~lV~dEaD~lfe~~~f~~ 308 (593)
T KOG0344|consen 232 YSIDEGTSLRAAQFSKPAYPSQ---KPAFLSDEKYDILISTPMRIVGLLGLGKLNIDLSKVEWLVVDEADLLFEPEFFVE 308 (593)
T ss_pred cCCCCCCchhhhhcccccchhh---ccchhHHHHHHHHhcCHHHHHHHhcCCCccchhheeeeEeechHHhhhChhhHHH
Confidence 75 344444444322221 1111112268999999999999988765 7889999999999999998622222
Q ss_pred HHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCC
Q 000607 164 IMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 164 im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
-....|... .++.-++=.+|||-.. .+.++....-+.... +.+...
T Consensus 309 Qla~I~sac----~s~~i~~a~FSat~~~------------~VEE~~~~i~~~~~~------------------vivg~~ 354 (593)
T KOG0344|consen 309 QLADIYSAC----QSPDIRVALFSATISV------------YVEEWAELIKSDLKR------------------VIVGLR 354 (593)
T ss_pred HHHHHHHHh----cCcchhhhhhhccccH------------HHHHHHHHhhcccee------------------EEEecc
Confidence 233333221 1122233345665422 111111111100000 000000
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhh
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQ 323 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 323 (1396)
+. .
T Consensus 355 ---~s----a---------------------------------------------------------------------- 357 (593)
T KOG0344|consen 355 ---NS----A---------------------------------------------------------------------- 357 (593)
T ss_pred ---hh----H----------------------------------------------------------------------
Confidence 00 0
Q ss_pred cccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHH
Q 000607 324 LDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVL 403 (1396)
Q Consensus 324 ~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L 403 (1396)
+..+.+ ..... +....|+..+.+++.. .-...++|||++.+.|..|
T Consensus 358 ------------~~~V~Q---elvF~----------------gse~~K~lA~rq~v~~---g~~PP~lIfVQs~eRak~L 403 (593)
T KOG0344|consen 358 ------------NETVDQ---ELVFC----------------GSEKGKLLALRQLVAS---GFKPPVLIFVQSKERAKQL 403 (593)
T ss_pred ------------hhhhhh---hheee----------------ecchhHHHHHHHHHhc---cCCCCeEEEEecHHHHHHH
Confidence 000000 00000 1114556666666655 2457899999999999999
Q ss_pred HHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHH
Q 000607 404 QSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFI 483 (1396)
Q Consensus 404 ~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yi 483 (1396)
++.|..+ .++.++++||.. ++.+|.+++++||.|++.+||||+++++|||+.++|+||+||.|.+..+|+
T Consensus 404 ~~~L~~~----~~i~v~vIh~e~------~~~qrde~~~~FR~g~IwvLicTdll~RGiDf~gvn~VInyD~p~s~~syi 473 (593)
T KOG0344|consen 404 FEELEIY----DNINVDVIHGER------SQKQRDETMERFRIGKIWVLICTDLLARGIDFKGVNLVINYDFPQSDLSYI 473 (593)
T ss_pred HHHhhhc----cCcceeeEeccc------chhHHHHHHHHHhccCeeEEEehhhhhccccccCcceEEecCCCchhHHHH
Confidence 9999633 689999999984 999999999999999999999999999999999999999999999999999
Q ss_pred HhhhcccCCC--CcEEEEEecCCcchHHHHHHHHH
Q 000607 484 QSRGRARMQN--SDYLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 484 Qr~GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
||+||+||+| |.++.|+++.|....+.+.+.+.
T Consensus 474 hrIGRtgRag~~g~Aitfytd~d~~~ir~iae~~~ 508 (593)
T KOG0344|consen 474 HRIGRTGRAGRSGKAITFYTDQDMPRIRSIAEVME 508 (593)
T ss_pred HHhhccCCCCCCcceEEEeccccchhhhhHHHHHH
Confidence 9999999988 78999999877766665555443
No 64
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.96 E-value=1.7e-27 Score=311.10 Aligned_cols=314 Identities=21% Similarity=0.232 Sum_probs=198.2
Q ss_pred EEeCCCchHHHHHHH-HHHHHHHHh-------cCCCCcEEEEEeCCcccHHHHHHHHHH---------------hcCCeE
Q 000607 40 VFLETGSGKTLIAIM-LLRSYAYLL-------RKPSPFVAVFLVPKVVLVPQQAEAIKM---------------HTDLKV 96 (1396)
Q Consensus 40 v~~~TGsGKT~iail-li~~l~~~~-------~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---------------~~~~~v 96 (1396)
|++|||||||++|.+ +|..+.... ...++.++|+|+|+++|+.|+.+.++. ..+++|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 579999999999998 455443321 012356899999999999999998863 136889
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-CccccceeEEEEeccccccCCC---cHHHHHHHHHHhh
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-YFKLNMIKVLILDECHHARGKH---QYACIMTEFYHRL 172 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-~~~l~~i~llI~DEaH~~~~~~---~~~~im~~f~~~~ 172 (1396)
+..+|+...+ +........++|+|+||+.|..++.+. ...++++++||+||+|.+.+.. .+...+..+..
T Consensus 81 ~vrtGDt~~~----eR~rll~~ppdILVTTPEsL~~LLtsk~r~~L~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~~-- 154 (1490)
T PRK09751 81 GIRTGDTPAQ----ERSKLTRNPPDILITTPESLYLMLTSRARETLRGVETVIIDEVHAVAGSKRGAHLALSLERLDA-- 154 (1490)
T ss_pred EEEECCCCHH----HHHHHhcCCCCEEEecHHHHHHHHhhhhhhhhccCCEEEEecHHHhcccccccHHHHHHHHHHH--
Confidence 9999986543 222222346899999999999887654 3457899999999999998641 23344444332
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe--EEeccChhhhcccccCCcceeEeccCCCCchhhH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK--VYTCASESVLSNFIPFSTAKFKFYKYDEIPHALY 250 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~--i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~ 250 (1396)
.....++++|||||..+ ..++..+|... +..+. ... .++....+.+.. . ...
T Consensus 155 ---l~~~~~QrIgLSATI~n-------------~eevA~~L~g~~pv~Iv~-~~~-----~r~~~l~v~vp~---~-d~~ 208 (1490)
T PRK09751 155 ---LLHTSAQRIGLSATVRS-------------ASDVAAFLGGDRPVTVVN-PPA-----MRHPQIRIVVPV---A-NMD 208 (1490)
T ss_pred ---hCCCCCeEEEEEeeCCC-------------HHHHHHHhcCCCCEEEEC-CCC-----CcccceEEEEec---C-chh
Confidence 12345789999999864 22344555421 11110 000 000000000000 0 000
Q ss_pred HHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 251 THLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 251 ~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
. +... .. .... ...
T Consensus 209 ~-~~~~------------~~-------------------------------------------~~~~--------~~~-- 222 (1490)
T PRK09751 209 D-VSSV------------AS-------------------------------------------GTGE--------DSH-- 222 (1490)
T ss_pred h-cccc------------cc-------------------------------------------cccc--------ccc--
Confidence 0 0000 00 0000 000
Q ss_pred HHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHH-HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHh
Q 000607 331 IIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI-VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSE 409 (1396)
Q Consensus 331 ~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv-~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~ 409 (1396)
... .....+.+ ..+++.+ ..+.++|||||+|..|+.++..|++
T Consensus 223 -----------------------------~~r--~~~i~~~v~~~il~~i-----~~~~stLVFvNSR~~AE~La~~L~~ 266 (1490)
T PRK09751 223 -----------------------------AGR--EGSIWPYIETGILDEV-----LRHRSTIVFTNSRGLAEKLTARLNE 266 (1490)
T ss_pred -----------------------------hhh--hhhhhHHHHHHHHHHH-----hcCCCEEEECCCHHHHHHHHHHHHH
Confidence 000 00000111 1122221 1356899999999999999999986
Q ss_pred hcCCC-----------------C-----------CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccc
Q 000607 410 LLPRH-----------------C-----------TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEG 461 (1396)
Q Consensus 410 ~~p~~-----------------~-----------~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeG 461 (1396)
..... . .+.+.+.||+ |++++|..+.++|++|++++||||+++|.|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ia~~HHGs------LSkeeR~~IE~~fK~G~LrvLVATssLELG 340 (1490)
T PRK09751 267 LYAARLQRSPSIAVDAAHFESTSGATSNRVQSSDVFIARSHHGS------VSKEQRAITEQALKSGELRCVVATSSLELG 340 (1490)
T ss_pred hhhhhccccccccchhhhhhhccccchhccccccceeeeecccc------CCHHHHHHHHHHHHhCCceEEEeCcHHHcc
Confidence 42100 0 0112344454 899999999999999999999999999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|||+++++||+||.|.+..+|+||+|||||..
T Consensus 341 IDIg~VDlVIq~gsP~sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 341 IDMGAVDLVIQVATPLSVASGLQRIGRAGHQV 372 (1490)
T ss_pred CCcccCCEEEEeCCCCCHHHHHHHhCCCCCCC
Confidence 99999999999999999999999999999964
No 65
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=297.76 Aligned_cols=330 Identities=22% Similarity=0.276 Sum_probs=234.8
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHH-HHHHHH--hcCCCCcEEEEEeCCcccHHHHHHHHHHh---cC
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLL-RSYAYL--LRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli-~~l~~~--~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~ 93 (1396)
.|+++|..|++.++.| ++|.++-||||||+.+++++ ++.... .....|+.++|++||++|+.|..+.++++ ++
T Consensus 387 k~~~IQ~qAiP~ImsGrdvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k~l~ 466 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGRDVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLKLLG 466 (997)
T ss_pred CCcchhhhhcchhccCcceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHhhcC
Confidence 4899999999999998 89999999999999998754 333221 11236899999999999999988888766 58
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc---CccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS---YFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~---~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+++..++|+.+.. +.....-.++.|+||||+++.+.+... ..++.++.++|+|||+++.. .+|..
T Consensus 467 ir~v~vygg~~~~----~qiaelkRg~eIvV~tpGRmiD~l~~n~grvtnlrR~t~lv~deaDrmfd--------mgfeP 534 (997)
T KOG0334|consen 467 IRVVCVYGGSGIS----QQIAELKRGAEIVVCTPGRMIDILCANSGRVTNLRRVTYLVLDEADRMFD--------MGFEP 534 (997)
T ss_pred ceEEEecCCccHH----HHHHHHhcCCceEEeccchhhhhHhhcCCccccccccceeeechhhhhhe--------eccCc
Confidence 9999999985543 445555668999999999999987643 34566777999999999874 22220
Q ss_pred h---hccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 171 R---LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 171 ~---~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
. ++++. ..-.+.+..|||-.. ++..|... ....|.+.++-+..
T Consensus 535 q~~~Ii~nl-rpdrQtvlfSatfpr------------~m~~la~~----------------vl~~Pveiiv~~~s----- 580 (997)
T KOG0334|consen 535 QITRILQNL-RPDRQTVLFSATFPR------------SMEALARK----------------VLKKPVEIIVGGRS----- 580 (997)
T ss_pred ccchHHhhc-chhhhhhhhhhhhhH------------HHHHHHHH----------------hhcCCeeEEEccce-----
Confidence 0 00000 011123333333211 11111000 00011111111000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
T Consensus 581 -------------------------------------------------------------------------------- 580 (997)
T KOG0334|consen 581 -------------------------------------------------------------------------------- 580 (997)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCC-CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS-GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.....+...+.. .....|+..|.++|..+. ++.++||||.....+..|.+-
T Consensus 581 --------------------------vV~k~V~q~v~V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~ 632 (997)
T KOG0334|consen 581 --------------------------VVCKEVTQVVRVCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRD 632 (997)
T ss_pred --------------------------eEeccceEEEEEecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHH
Confidence 000000011111 123789999999999974 588999999999999999998
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhh
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSR 486 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~ 486 (1396)
|.. .++.|..+||.. ++.+|..++++||+|.+++||||+++++|+|++...+||+||.|.....|+||.
T Consensus 633 L~~-----ag~~~~slHGgv------~q~dR~sti~dfK~~~~~LLvaTsvvarGLdv~~l~Lvvnyd~pnh~edyvhR~ 701 (997)
T KOG0334|consen 633 LQK-----AGYNCDSLHGGV------DQHDRSSTIEDFKNGVVNLLVATSVVARGLDVKELILVVNYDFPNHYEDYVHRV 701 (997)
T ss_pred HHh-----cCcchhhhcCCC------chHHHHhHHHHHhccCceEEEehhhhhcccccccceEEEEcccchhHHHHHHHh
Confidence 886 489999999986 889999999999999999999999999999999999999999999999999999
Q ss_pred hcccCCC--CcEEEEEecCCcchHHHHHHHH
Q 000607 487 GRARMQN--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 487 GRA~R~g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
||+||.| +.++.|++.++......|-+.+
T Consensus 702 gRTgragrkg~AvtFi~p~q~~~a~dl~~al 732 (997)
T KOG0334|consen 702 GRTGRAGRKGAAVTFITPDQLKYAGDLCKAL 732 (997)
T ss_pred cccccCCccceeEEEeChHHhhhHHHHHHHH
Confidence 9999987 5778888765444444444444
No 66
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=99.96 E-value=2.9e-27 Score=307.62 Aligned_cols=356 Identities=19% Similarity=0.217 Sum_probs=212.7
Q ss_pred ccchHHHHHHHHHHhc------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 20 PFARNYQLEALENALK------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
+.+|+||.++++.+.+ ++++++|+||||||++++.++..+.. ....+++|||||+++|+.|+.+.|+.+..
T Consensus 412 ~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~---~~~~~rVLfLvDR~~L~~Qa~~~F~~~~~ 488 (1123)
T PRK11448 412 LGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLK---AKRFRRILFLVDRSALGEQAEDAFKDTKI 488 (1123)
T ss_pred CCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHh---cCccCeEEEEecHHHHHHHHHHHHHhccc
Confidence 5699999999987763 26999999999999999887766533 34567899999999999999999998632
Q ss_pred C---eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh-----cCccccceeEEEEeccccccCC-------
Q 000607 94 L---KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL-----SYFKLNMIKVLILDECHHARGK------- 158 (1396)
Q Consensus 94 ~---~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~-----~~~~l~~i~llI~DEaH~~~~~------- 158 (1396)
. .+..+++..+... ...-.+.+|+|+|+|.|.+.+.. ....+.++++||+|||||....
T Consensus 489 ~~~~~~~~i~~i~~L~~------~~~~~~~~I~iaTiQtl~~~~~~~~~~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~ 562 (1123)
T PRK11448 489 EGDQTFASIYDIKGLED------KFPEDETKVHVATVQGMVKRILYSDDPMDKPPVDQYDCIIVDEAHRGYTLDKEMSEG 562 (1123)
T ss_pred ccccchhhhhchhhhhh------hcccCCCCEEEEEHHHHHHhhhccccccccCCCCcccEEEEECCCCCCccccccccc
Confidence 1 1111222111000 00122589999999999876532 1245688999999999997420
Q ss_pred -----------CcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc
Q 000607 159 -----------HQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS 227 (1396)
Q Consensus 159 -----------~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~ 227 (1396)
..|+.++..|- ...|||||||.... ...++..++..+..+.+.
T Consensus 563 ~~~~~~~~~~~~~yr~iL~yFd-----------A~~IGLTATP~r~t---------------~~~FG~pv~~Ysl~eAI~ 616 (1123)
T PRK11448 563 ELQFRDQLDYVSKYRRVLDYFD-----------AVKIGLTATPALHT---------------TEIFGEPVYTYSYREAVI 616 (1123)
T ss_pred hhccchhhhHHHHHHHHHhhcC-----------ccEEEEecCCccch---------------hHHhCCeeEEeeHHHHHh
Confidence 24455554321 35799999997421 244566677665556555
Q ss_pred ccccC----CcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 000607 228 NFIPF----STAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWL 303 (1396)
Q Consensus 228 ~~~~~----~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~ 303 (1396)
...-. |......+....+...... ....++..... +...... ....+..
T Consensus 617 DG~Lv~~~~p~~i~t~~~~~gi~~~~~e-~~~~~~~~~~~----i~~~~l~---------------d~~~~~~------- 669 (1123)
T PRK11448 617 DGYLIDHEPPIRIETRLSQEGIHFEKGE-EVEVINTQTGE----IDLATLE---------------DEVDFEV------- 669 (1123)
T ss_pred cCCcccCcCCEEEEEEeccccccccccc-hhhhcchhhhh----hhhccCc---------------HHHhhhH-------
Confidence 43322 1111111111111000000 00000000000 0000000 0000000
Q ss_pred HHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-
Q 000607 304 ALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY- 382 (1396)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~- 382 (1396)
..+-..+ +. ......+.+.+.++
T Consensus 670 -----------------------------~~~~~~v---i~------------------------~~~~~~i~~~l~~~l 693 (1123)
T PRK11448 670 -----------------------------EDFNRRV---IT------------------------ESFNRVVCEELAKYL 693 (1123)
T ss_pred -----------------------------HHHHHHH---hh------------------------HHHHHHHHHHHHHHH
Confidence 0000000 00 01111111211111
Q ss_pred cCCCCeeEEEEechHHHHHHHHHHHHhhc----CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe-eEEEEecc
Q 000607 383 RGVEDIRCIIFVERVITAIVLQSLLSELL----PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV-NVIVATSI 457 (1396)
Q Consensus 383 ~~~~~~k~IIFv~~r~ta~~L~~~L~~~~----p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~-nvLVaTsv 457 (1396)
......|+||||.++.+|..+.+.|.+.. +...+..+..++|+. .++.+++++|+++.. +|+|++++
T Consensus 694 ~~~~~~KtiIF~~s~~HA~~i~~~L~~~f~~~~~~~~~~~v~~itg~~--------~~~~~li~~Fk~~~~p~IlVsvdm 765 (1123)
T PRK11448 694 DPTGEGKTLIFAATDAHADMVVRLLKEAFKKKYGQVEDDAVIKITGSI--------DKPDQLIRRFKNERLPNIVVTVDL 765 (1123)
T ss_pred hccCCCcEEEEEcCHHHHHHHHHHHHHHHHhhcCCcCccceEEEeCCc--------cchHHHHHHHhCCCCCeEEEEecc
Confidence 11234799999999999999999887642 111223455677763 346789999999887 69999999
Q ss_pred cccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC----CCcEEEEEe
Q 000607 458 LEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ----NSDYLLMVK 501 (1396)
Q Consensus 458 leeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~----gs~~i~lv~ 501 (1396)
+.+|+|+|.|++||.++++.|...|+|++||+.|. |.....+++
T Consensus 766 L~TG~DvP~v~~vVf~rpvkS~~lf~QmIGRgtR~~~~~~K~~f~I~D 813 (1123)
T PRK11448 766 LTTGIDVPSICNLVFLRRVRSRILYEQMLGRATRLCPEIGKTHFRIFD 813 (1123)
T ss_pred cccCCCcccccEEEEecCCCCHHHHHHHHhhhccCCccCCCceEEEEe
Confidence 99999999999999999999999999999999885 334455554
No 67
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=4.8e-27 Score=290.46 Aligned_cols=318 Identities=17% Similarity=0.178 Sum_probs=202.5
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHH---------HHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSY---------AYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l---------~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
...|.++++.++++ ++|+.++||||||.+.-..+.+. .+... ....+++++++||++|+.|....+.+.
T Consensus 166 ~~iQ~qil~~i~~gkdvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~~ 245 (675)
T PHA02653 166 PDVQLKIFEAWISRKPVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLKS 245 (675)
T ss_pred HHHHHHHHHHHHhCCCEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHHH
Confidence 45788888888876 89999999999998743222221 11111 234568999999999999999998765
Q ss_pred c------CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHH
Q 000607 92 T------DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 92 ~------~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
. +..+...+|+... ..+.......+|+|+|++... ..++++++||+||||...... .++
T Consensus 246 vg~~~~~g~~v~v~~Gg~~~-----~~~~t~~k~~~Ilv~T~~L~l-------~~L~~v~~VVIDEaHEr~~~~---Dll 310 (675)
T PHA02653 246 LGFDEIDGSPISLKYGSIPD-----ELINTNPKPYGLVFSTHKLTL-------NKLFDYGTVIIDEVHEHDQIG---DII 310 (675)
T ss_pred hCccccCCceEEEEECCcch-----HHhhcccCCCCEEEEeCcccc-------cccccCCEEEccccccCccch---hHH
Confidence 4 3456778887542 222223336799999976322 246789999999999986543 222
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
..+... .....++++.||||+.. ++..+...++. ....+. .....|.+ ..|-...
T Consensus 311 L~llk~----~~~~~rq~ILmSATl~~------------dv~~l~~~~~~p~~I~I~------grt~~pV~--~~yi~~~ 366 (675)
T PHA02653 311 IAVARK----HIDKIRSLFLMTATLED------------DRDRIKEFFPNPAFVHIP------GGTLFPIS--EVYVKNK 366 (675)
T ss_pred HHHHHH----hhhhcCEEEEEccCCcH------------hHHHHHHHhcCCcEEEeC------CCcCCCeE--EEEeecC
Confidence 233221 11233589999999843 12334444432 222110 00001111 1111000
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
.......
T Consensus 367 ~~~~~~~------------------------------------------------------------------------- 373 (675)
T PHA02653 367 YNPKNKR------------------------------------------------------------------------- 373 (675)
T ss_pred cccccch-------------------------------------------------------------------------
Confidence 0000000
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
.+.. ..| ..+.+.+.......+.++|||++++..+..+.
T Consensus 374 ---------~y~~-------------------------------~~k-~~~l~~L~~~~~~~~g~iLVFlpg~~ei~~l~ 412 (675)
T PHA02653 374 ---------AYIE-------------------------------EEK-KNIVTALKKYTPPKGSSGIVFVASVSQCEEYK 412 (675)
T ss_pred ---------hhhH-------------------------------HHH-HHHHHHHHHhhcccCCcEEEEECcHHHHHHHH
Confidence 0000 000 01111121111123468999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHH-hcCCeeEEEEecccccccCCCcccEEEEeC---CCC---
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEF-RRGLVNVIVATSILEEGLDVQSCNLVIMFD---PSR--- 477 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~F-r~g~~nvLVaTsvleeGiDIp~~~lVI~fD---~p~--- 477 (1396)
+.|++.. .++.+..+||. |++. ++++++| ++|+.+|||||+++|+|||||++++||++| .|.
T Consensus 413 ~~L~~~~---~~~~v~~LHG~------Lsq~--eq~l~~ff~~gk~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~ 481 (675)
T PHA02653 413 KYLEKRL---PIYDFYIIHGK------VPNI--DEILEKVYSSKNPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFG 481 (675)
T ss_pred HHHHhhc---CCceEEeccCC------cCHH--HHHHHHHhccCceeEEeccChhhccccccCeeEEEECCCccCCCccc
Confidence 9998641 26889999997 4653 5677887 789999999999999999999999999998 555
Q ss_pred ------cHHHHHHhhhcccCCC-CcEEEEEecCC
Q 000607 478 ------TVCSFIQSRGRARMQN-SDYLLMVKSGD 504 (1396)
Q Consensus 478 ------s~~~yiQr~GRA~R~g-s~~i~lv~~~~ 504 (1396)
|..+|+||+|||||.. |.++.++++++
T Consensus 482 g~~~~iSkasa~QRaGRAGR~~~G~c~rLyt~~~ 515 (675)
T PHA02653 482 GKEMFISKSMRTQRKGRVGRVSPGTYVYFYDLDL 515 (675)
T ss_pred CcccccCHHHHHHhccCcCCCCCCeEEEEECHHH
Confidence 7889999999999976 68888887553
No 68
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.95 E-value=1.8e-26 Score=284.02 Aligned_cols=324 Identities=20% Similarity=0.203 Sum_probs=223.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHH-HHHHHHHh--cCCCCcEEEEEeCCcccHHHHHHHHHH---h
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIML-LRSYAYLL--RKPSPFVAVFLVPKVVLVPQQAEAIKM---H 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iaill-i~~l~~~~--~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~ 91 (1396)
...|++.|.++++.+.+| |++|.+|||||||++|.+. +..+.... ....+-.++++.|-++|...+...++. .
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~~~~ 99 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGENVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEPLRE 99 (814)
T ss_pred cCCCCHHHHHHHHHHhCCCceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHHHHH
Confidence 345999999999999998 9999999999999999984 44443331 112456899999999999988887775 4
Q ss_pred cCCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 92 TDLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 92 ~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+|+.+..-+|++... ++-....+-++|+|+||+.|.-++.... -.+.++..+|+||.|.+.++.--.++.-..-
T Consensus 100 ~G~~v~vRhGDT~~~----er~r~~~~PPdILiTTPEsL~lll~~~~~r~~l~~vr~VIVDEiHel~~sKRG~~Lsl~Le 175 (814)
T COG1201 100 LGIEVAVRHGDTPQS----EKQKMLKNPPHILITTPESLAILLNSPKFRELLRDVRYVIVDEIHALAESKRGVQLALSLE 175 (814)
T ss_pred cCCccceecCCCChH----HhhhccCCCCcEEEeChhHHHHHhcCHHHHHHhcCCcEEEeehhhhhhccccchhhhhhHH
Confidence 689998889986433 1122233368999999999988776532 3468999999999999986532222211111
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-----EEeccChhhhcccccCCcceeEeccCCC
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-----VYTCASESVLSNFIPFSTAKFKFYKYDE 244 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-----i~~~~~~~~l~~~~~~~~~~~~~y~~~~ 244 (1396)
+ +..... .++.+|||||... ...+.+.|... +..+.. ...+...++ .
T Consensus 176 -R-L~~l~~-~~qRIGLSATV~~-------------~~~varfL~g~~~~~~Iv~~~~-------~k~~~i~v~-~---- 227 (814)
T COG1201 176 -R-LRELAG-DFQRIGLSATVGP-------------PEEVAKFLVGFGDPCEIVDVSA-------AKKLEIKVI-S---- 227 (814)
T ss_pred -H-HHhhCc-ccEEEeehhccCC-------------HHHHHHHhcCCCCceEEEEccc-------CCcceEEEE-e----
Confidence 1 111222 6899999999863 33344444332 111100 000000000 0
Q ss_pred CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhc
Q 000607 245 IPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQL 324 (1396)
Q Consensus 245 ~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~ 324 (1396)
|..... |
T Consensus 228 -p~~~~~--------------------------------------------------~---------------------- 234 (814)
T COG1201 228 -PVEDLI--------------------------------------------------Y---------------------- 234 (814)
T ss_pred -cCCccc--------------------------------------------------c----------------------
Confidence 000000 0
Q ss_pred ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHH
Q 000607 325 DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 325 ~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
. ......-...+.+++++ ...+|||+|+|.+|+.+.
T Consensus 235 -----------------------------~----------~~~~~~~~~~i~~~v~~-----~~ttLIF~NTR~~aE~l~ 270 (814)
T COG1201 235 -----------------------------D----------EELWAALYERIAELVKK-----HRTTLIFTNTRSGAERLA 270 (814)
T ss_pred -----------------------------c----------cchhHHHHHHHHHHHhh-----cCcEEEEEeChHHHHHHH
Confidence 0 00001122333444433 348999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
..|++. ....+..-||+ ++..+|.++.++|++|+++++|||+.+|-|||+.++++||+|..|.+...++|
T Consensus 271 ~~L~~~----~~~~i~~HHgS------lSre~R~~vE~~lk~G~lravV~TSSLELGIDiG~vdlVIq~~SP~sV~r~lQ 340 (814)
T COG1201 271 FRLKKL----GPDIIEVHHGS------LSRELRLEVEERLKEGELKAVVATSSLELGIDIGDIDLVIQLGSPKSVNRFLQ 340 (814)
T ss_pred HHHHHh----cCCceeeeccc------ccHHHHHHHHHHHhcCCceEEEEccchhhccccCCceEEEEeCCcHHHHHHhH
Confidence 999976 23444555555 69999999999999999999999999999999999999999999999999999
Q ss_pred hhhcccCCC---CcEEEEEe
Q 000607 485 SRGRARMQN---SDYLLMVK 501 (1396)
Q Consensus 485 r~GRA~R~g---s~~i~lv~ 501 (1396)
|.||+|+.- |+.+++..
T Consensus 341 RiGRsgHr~~~~Skg~ii~~ 360 (814)
T COG1201 341 RIGRAGHRLGEVSKGIIIAE 360 (814)
T ss_pred hccccccccCCcccEEEEec
Confidence 999998864 56666654
No 69
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=99.95 E-value=1.3e-25 Score=261.47 Aligned_cols=410 Identities=19% Similarity=0.218 Sum_probs=255.8
Q ss_pred ccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-C
Q 000607 20 PFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~ 93 (1396)
-.+|+||.+.+++... | |+|+++.+|.|||++++.++-++.+.... +| .-+|+||...| .+|.++|++++ +
T Consensus 166 g~lr~YQveGlnWLi~l~engingILaDEMGLGKTlQtIs~l~yl~~~~~~-~G-PfLVi~P~StL-~NW~~Ef~rf~P~ 242 (971)
T KOG0385|consen 166 GELRDYQLEGLNWLISLYENGINGILADEMGLGKTLQTISLLGYLKGRKGI-PG-PFLVIAPKSTL-DNWMNEFKRFTPS 242 (971)
T ss_pred CccchhhhccHHHHHHHHhcCcccEeehhcccchHHHHHHHHHHHHHhcCC-CC-CeEEEeeHhhH-HHHHHHHHHhCCC
Confidence 3489999999998875 4 89999999999999999988776553322 33 37999999777 88999999998 5
Q ss_pred CeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC-cHHHHHHHHHH
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH-QYACIMTEFYH 170 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~~f~~ 170 (1396)
+++..|+|+..-. ....+..+. ..+|+|+||++.++. ..++.--.|.+||+||||++++.+ --.++++.|.
T Consensus 243 l~~~~~~Gdk~eR---~~~~r~~~~~~~fdV~iTsYEi~i~d--k~~lk~~~W~ylvIDEaHRiKN~~s~L~~~lr~f~- 316 (971)
T KOG0385|consen 243 LNVVVYHGDKEER---AALRRDIMLPGRFDVCITSYEIAIKD--KSFLKKFNWRYLVIDEAHRIKNEKSKLSKILREFK- 316 (971)
T ss_pred cceEEEeCCHHHH---HHHHHHhhccCCCceEeehHHHHHhh--HHHHhcCCceEEEechhhhhcchhhHHHHHHHHhc-
Confidence 8999999984211 011112221 689999999999865 335555679999999999999754 2345566664
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC---eEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS---KVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~---~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
.+..|++|+||..++ +.+|.++|+- .+++ +.+++..+..... ..-..
T Consensus 317 ---------~~nrLLlTGTPLQNN-----------L~ELWaLLnFllPdiF~--~~e~F~swF~~~~--------~~~~~ 366 (971)
T KOG0385|consen 317 ---------TDNRLLLTGTPLQNN-----------LHELWALLNFLLPDIFN--SAEDFDSWFDFTN--------CEGDQ 366 (971)
T ss_pred ---------ccceeEeeCCccccc-----------HHHHHHHHHhhchhhcc--CHHHHHHHHcccc--------cccCH
Confidence 456899999999875 5556555543 2332 2333333322110 00011
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
+ +...+.....++...-...+...+ + .+++.+.-+ .|.-...+ +++.. .....++.-
T Consensus 367 e----~v~~Lh~vL~pFlLRR~K~dVe~s-L-ppKkE~~iy----------vgms~mQk--k~Y~~-----iL~kdl~~~ 423 (971)
T KOG0385|consen 367 E----LVSRLHKVLRPFLLRRIKSDVEKS-L-PPKKELIIY----------VGMSSMQK--KWYKA-----ILMKDLDAL 423 (971)
T ss_pred H----HHHHHHhhhhHHHHHHHHHhHhhc-C-CCcceeeEe----------ccchHHHH--HHHHH-----HHHhcchhh
Confidence 1 111221111111100000000000 0 000000000 00000000 00000 000000000
Q ss_pred h--HHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCC---CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHH
Q 000607 328 G--ETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDS---GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIV 402 (1396)
Q Consensus 328 ~--~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~---~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~ 402 (1396)
. ...-+.-+.++...|+.++...--+.-.+..+..... -.-|.|+..|-.+|.... ..+.|++||.+--.+.+.
T Consensus 424 n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehLv~nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDI 502 (971)
T KOG0385|consen 424 NGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHLVTNSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDI 502 (971)
T ss_pred cccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHHHhcCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHH
Confidence 0 0001334555666666666443322222211111111 123788888888888753 589999999999999888
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTV 479 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~ 479 (1396)
|.+++.- .++....+.|+. +..+|...++.|.... .-.|++|.+++-|||+.++++||.||..|||
T Consensus 503 LeDyc~~-----R~y~ycRiDGSt------~~eeR~~aI~~fn~~~s~~FiFlLSTRAGGLGINL~aADtVIlyDSDWNP 571 (971)
T KOG0385|consen 503 LEDYCML-----RGYEYCRLDGST------SHEEREDAIEAFNAPPSEKFIFLLSTRAGGLGINLTAADTVILYDSDWNP 571 (971)
T ss_pred HHHHHHh-----cCceeEeecCCC------CcHHHHHHHHhcCCCCcceEEEEEeccccccccccccccEEEEecCCCCc
Confidence 8888763 688999999985 8899999999998643 4578899999999999999999999999999
Q ss_pred HHHHHhhhcccCCCC----cEEEEEecC
Q 000607 480 CSFIQSRGRARMQNS----DYLLMVKSG 503 (1396)
Q Consensus 480 ~~yiQr~GRA~R~gs----~~i~lv~~~ 503 (1396)
..-.|+..||+|.|+ .++-++++.
T Consensus 572 Q~DLQAmDRaHRIGQ~K~V~V~RLiten 599 (971)
T KOG0385|consen 572 QVDLQAMDRAHRIGQKKPVVVYRLITEN 599 (971)
T ss_pred hhhhHHHHHHHhhCCcCceEEEEEeccc
Confidence 999999999999996 355666644
No 70
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.95 E-value=1.9e-26 Score=274.98 Aligned_cols=296 Identities=19% Similarity=0.159 Sum_probs=187.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCccc----CCccc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDF----WDGAT 112 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~----~~~~~ 112 (1396)
+++|.+|||||||.++.+++.+.. ....+.++++++|+++|+.|+++.++..++.+++.++|...... .+...
T Consensus 1 ~vvi~apTGsGKT~~~~~~~l~~~---~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 77 (358)
T TIGR01587 1 LLVIEAPTGYGKTEAALLWALHSI---KSQKADRVIIALPTRATINAMYRRAKELFGSNLGLLHSSSSFKRIKEMGDSEE 77 (358)
T ss_pred CEEEEeCCCCCHHHHHHHHHHHHH---hhCCCCeEEEEeehHHHHHHHHHHHHHHhCcccEEeeccHHHHHHhccCCchh
Confidence 478999999999999998765442 23456789999999999999999999987777777777532110 00011
Q ss_pred hH----H------hhccCcEEEecHHHHHHhHhhcC----cccc--ceeEEEEeccccccCCCcHHHHHHHHHHhhccCC
Q 000607 113 WK----E------EMSKHEVLVMTPQILLDGLRLSY----FKLN--MIKVLILDECHHARGKHQYACIMTEFYHRLLETG 176 (1396)
Q Consensus 113 ~~----~------~~~~~~ViV~T~q~L~~~l~~~~----~~l~--~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~ 176 (1396)
+. . .....+|+|+||+.+++.+.+.+ ..+. ..+++||||||.+.... +.. +.......
T Consensus 78 ~~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~~~~~~~~~~~~~~iViDE~h~~~~~~-~~~-l~~~l~~l---- 151 (358)
T TIGR01587 78 FEHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFGHYEFTLASIANSLLIFDEVHFYDEYT-LAL-ILAVLEVL---- 151 (358)
T ss_pred HHHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccchHHHHHHHhcCCEEEEeCCCCCCHHH-HHH-HHHHHHHH----
Confidence 11 1 11247899999999988766521 1122 23799999999998531 111 22222111
Q ss_pred CCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHH
Q 000607 177 DSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADE 256 (1396)
Q Consensus 177 ~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~ 256 (1396)
.....++++||||+.. .+.++....... +.. ..++..... ..
T Consensus 152 ~~~~~~~i~~SATlp~------------~l~~~~~~~~~~----------------~~~--~~~~~~~~~-~~------- 193 (358)
T TIGR01587 152 KDNDVPILLMSATLPK------------FLKEYAEKIGYV----------------EFN--EPLDLKEER-RF------- 193 (358)
T ss_pred HHcCCCEEEEecCchH------------HHHHHHhcCCCc----------------ccc--cCCCCcccc-cc-------
Confidence 1234679999999742 121111111000 000 000000000 00
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
.. ..
T Consensus 194 ------------~~----------------------------------------------~~------------------ 197 (358)
T TIGR01587 194 ------------ER----------------------------------------------HR------------------ 197 (358)
T ss_pred ------------cc----------------------------------------------cc------------------
Confidence 00 00
Q ss_pred HHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 337 SDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
+ .. . ......|...+.+++... ..+.++||||+++..+..+++.|++..+ .
T Consensus 198 ------~----------~~---~-----~~~~~~~~~~l~~l~~~~--~~~~~~lVf~~t~~~~~~~~~~L~~~~~---~ 248 (358)
T TIGR01587 198 ------F----------IK---I-----ESDKVGEISSLERLLEFI--KKGGKIAIIVNTVDRAQEFYQQLKENAP---E 248 (358)
T ss_pred ------c----------ee---e-----ccccccCHHHHHHHHHHh--hCCCeEEEEECCHHHHHHHHHHHHhhcC---C
Confidence 0 00 0 000012233333444332 2467999999999999999999986421 2
Q ss_pred ceeeEEecCCCCcCCCCHHHHHH----HHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNE----IVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~----~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
..+..+||. |++.+|.+ ++++|++|+.++||||+++|+||||+ +++||+++.| ..+|+||.||+||.
T Consensus 249 ~~~~~~h~~------~~~~~r~~~~~~~~~~f~~~~~~ilvaT~~~~~GiDi~-~~~vi~~~~~--~~~~iqr~GR~gR~ 319 (358)
T TIGR01587 249 EEIMLLHSR------FTEKDRAKKEAELLEEMKKNEKFVIVATQVIEASLDIS-ADVMITELAP--IDSLIQRLGRLHRY 319 (358)
T ss_pred CeEEEEECC------CCHHHHHHHHHHHHHHhcCCCCeEEEECcchhceeccC-CCEEEEcCCC--HHHHHHHhccccCC
Confidence 468899997 57777755 58999999999999999999999995 8999998877 78999999999997
Q ss_pred C
Q 000607 493 N 493 (1396)
Q Consensus 493 g 493 (1396)
|
T Consensus 320 g 320 (358)
T TIGR01587 320 G 320 (358)
T ss_pred C
Confidence 6
No 71
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.4e-26 Score=253.01 Aligned_cols=333 Identities=20% Similarity=0.245 Sum_probs=237.5
Q ss_pred CCcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---c
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
.....|...|+.++..+.+| |+++.+++|+|||.++...+....+. ......+++++||++|+.|..++.+.. .
T Consensus 44 yGFekPSaIQqraI~p~i~G~dv~~qaqsgTgKt~af~i~iLq~iD~--~~ke~qalilaPtreLa~qi~~v~~~lg~~~ 121 (397)
T KOG0327|consen 44 YGFEKPSAIQQRAILPCIKGHDVIAQAQSGTGKTAAFLISILQQIDM--SVKETQALILAPTRELAQQIQKVVRALGDHM 121 (397)
T ss_pred hccCCchHHHhccccccccCCceeEeeeccccchhhhHHHHHhhcCc--chHHHHHHHhcchHHHHHHHHHHHHhhhccc
Confidence 34556899999999999998 99999999999999977665443221 113456999999999999988777764 4
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
+.++..+.|+.+... +.-......++|+|.||+...++++.+.+....+.+.|+|||+......---+| ...
T Consensus 122 ~~~v~~~igg~~~~~---~~~~i~~~~~hivvGTpgrV~dml~~~~l~~~~iKmfvlDEaDEmLs~gfkdqI-----~~i 193 (397)
T KOG0327|consen 122 DVSVHACIGGTNVRR---EDQALLKDKPHIVVGTPGRVFDMLNRGSLSTDGIKMFVLDEADEMLSRGFKDQI-----YDI 193 (397)
T ss_pred ceeeeeecCcccchh---hhhhhhccCceeecCCchhHHHhhccccccccceeEEeecchHhhhccchHHHH-----HHH
Confidence 678887777754431 111222335899999999999999999888899999999999998864322222 222
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
.+.. +..-+++.+|||-+.. +..+-. +|...|....+..+. ..
T Consensus 194 f~~l-p~~vQv~l~SAT~p~~------------vl~vt~----------------~f~~~pv~i~vkk~~------lt-- 236 (397)
T KOG0327|consen 194 FQEL-PSDVQVVLLSATMPSD------------VLEVTK----------------KFMREPVRILVKKDE------LT-- 236 (397)
T ss_pred HHHc-CcchhheeecccCcHH------------HHHHHH----------------HhccCceEEEecchh------hh--
Confidence 1112 3334899999997541 111111 111222211111110 00
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
+..
T Consensus 237 ---------------l~g-------------------------------------------------------------- 239 (397)
T KOG0327|consen 237 ---------------LEG-------------------------------------------------------------- 239 (397)
T ss_pred ---------------hhh--------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
+++.. + +. . ..+|+..|.++.. .-...+|||+++.-+..+...|..
T Consensus 240 ----------ikq~~-------i--~v---~----k~~k~~~l~dl~~-----~~~q~~if~nt~r~v~~l~~~L~~--- 285 (397)
T KOG0327|consen 240 ----------IKQFY-------I--NV---E----KEEKLDTLCDLYR-----RVTQAVIFCNTRRKVDNLTDKLRA--- 285 (397)
T ss_pred ----------eeeee-------e--ec---c----ccccccHHHHHHH-----hhhcceEEecchhhHHHHHHHHhh---
Confidence 00000 0 00 0 0226666666654 356789999999999999999965
Q ss_pred CCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 413 RHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 413 ~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
.++.+.++||. |.+.+|..+++.|++|..+|||+|+.+++|||+..|.+|||||+|.+..+|+||+||+||-
T Consensus 286 --~~~~~s~~~~d------~~q~~R~~~~~ef~~gssrvlIttdl~argidv~~~slvinydlP~~~~~yihR~gr~gr~ 357 (397)
T KOG0327|consen 286 --HGFTVSAIHGD------MEQNERDTLMREFRSGSSRVLITTDLLARGIDVQQVSLVVNYDLPARKENYIHRIGRAGRF 357 (397)
T ss_pred --CCceEEEeecc------cchhhhhHHHHHhhcCCceEEeeccccccccchhhcceeeeeccccchhhhhhhccccccc
Confidence 48899999998 6999999999999999999999999999999999999999999999999999999999998
Q ss_pred C--CcEEEEEecCCcchHHHHHHHH
Q 000607 493 N--SDYLLMVKSGDSTTQSRLENYL 515 (1396)
Q Consensus 493 g--s~~i~lv~~~~~~~~~~i~~~~ 515 (1396)
| +..+.++++.+....+++++++
T Consensus 358 grkg~~in~v~~~d~~~lk~ie~~y 382 (397)
T KOG0327|consen 358 GRKGVAINFVTEEDVRDLKDIEKFY 382 (397)
T ss_pred CCCceeeeeehHhhHHHHHhHHHhc
Confidence 8 5678888776665555555443
No 72
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.94 E-value=7e-26 Score=266.59 Aligned_cols=319 Identities=20% Similarity=0.255 Sum_probs=187.8
Q ss_pred HHHHHHHHHhcCC---EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-------CC
Q 000607 25 YQLEALENALKQN---TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-------DL 94 (1396)
Q Consensus 25 yQ~e~~~~~l~~n---~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-------~~ 94 (1396)
+|.++++.+.++| +++++|||||||.++++.+.. ...+++|++|+++|+.||++.++.++ +.
T Consensus 1 hQ~~~~~~~~~~~~~~~~i~apTGsGKT~~~~~~~l~--------~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~ 72 (357)
T TIGR03158 1 HQVATFEALQSKDADIIFNTAPTGAGKTLAWLTPLLH--------GENDTIALYPTNALIEDQTEAIKEFVDVFKPERDV 72 (357)
T ss_pred CHHHHHHHHHcCCCCEEEEECCCCCCHHHHHHHHHHH--------cCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCc
Confidence 6999999999873 788999999999999875532 13358999999999999999998875 56
Q ss_pred eEEEEeCCCCcc--cCC--------ccc----hHHh--hccCcEEEecHHHHHHhHhhcCc--------cccceeEEEEe
Q 000607 95 KVGKYWGDMGVD--FWD--------GAT----WKEE--MSKHEVLVMTPQILLDGLRLSYF--------KLNMIKVLILD 150 (1396)
Q Consensus 95 ~v~~~~G~~~~~--~~~--------~~~----~~~~--~~~~~ViV~T~q~L~~~l~~~~~--------~l~~i~llI~D 150 (1396)
.+..+.|+...+ .|. .+. ++.. ...++|+++||++|..++.+.+. .+..+++||||
T Consensus 73 ~v~~~~g~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~~~~~~iV~D 152 (357)
T TIGR03158 73 NLLHVSKATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFYTKFSTVIFD 152 (357)
T ss_pred eEEEecCCchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhhcCCCEEEEe
Confidence 677888863322 111 010 1111 23688999999999877654321 14689999999
Q ss_pred ccccccCCCcHHHH-HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHH--hCCeEEeccChhhhc
Q 000607 151 ECHHARGKHQYACI-MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETL--MNSKVYTCASESVLS 227 (1396)
Q Consensus 151 EaH~~~~~~~~~~i-m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~--L~~~i~~~~~~~~l~ 227 (1396)
|+|..........+ .-.+.. .+. .....+++++|||||.. .+ ...|+.. ++..+..+...
T Consensus 153 E~H~~~~~~~~~~~~~l~~~~-~~~-~~~~~~~~i~lSAT~~~--------~~---~~~l~~~~~~~~~~~~v~g~---- 215 (357)
T TIGR03158 153 EFHLYDAKQLVGMLFLLAYMQ-LIR-FFECRRKFVFLSATPDP--------AL---ILRLQNAKQAGVKIAPIDGE---- 215 (357)
T ss_pred cccccCcccchhhhhhhHHHH-HHH-hhhcCCcEEEEecCCCH--------HH---HHHHHhccccCceeeeecCc----
Confidence 99998753211111 000110 000 01123799999999853 11 2223333 22222211000
Q ss_pred ccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000607 228 NFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKA 307 (1396)
Q Consensus 228 ~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~ 307 (1396)
.+.+. +.| ++.. . ....++.
T Consensus 216 ---------~~~~~--~~~-~~~~----~-----------~~~~~~~--------------------------------- 235 (357)
T TIGR03158 216 ---------KYQFP--DNP-ELEA----D-----------NKTQSFR--------------------------------- 235 (357)
T ss_pred ---------ccccC--CCh-hhhc----c-----------ccccccc---------------------------------
Confidence 00000 000 0000 0 0000000
Q ss_pred HHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-hcCCC
Q 000607 308 AETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-YRGVE 386 (1396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~~~~~ 386 (1396)
..+...+.. . .. ........+..+.+.+.+ +...+
T Consensus 236 -~~~~~i~~~-------------------------------------~----~~--~~~~~~~~l~~l~~~i~~~~~~~~ 271 (357)
T TIGR03158 236 -PVLPPVELE-------------------------------------L----IP--APDFKEEELSELAEEVIERFRQLP 271 (357)
T ss_pred -eeccceEEE-------------------------------------E----Ee--CCchhHHHHHHHHHHHHHHHhccC
Confidence 000000000 0 00 000001112222222222 22235
Q ss_pred CeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCc
Q 000607 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQS 466 (1396)
Q Consensus 387 ~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~ 466 (1396)
+.++||||+++..++.++..|++.. .++.+..+||. |++.+|.+ .++..+||||+++++|||+|.
T Consensus 272 ~~k~LIf~nt~~~~~~l~~~L~~~~---~~~~~~~l~g~------~~~~~R~~------~~~~~iLVaTdv~~rGiDi~~ 336 (357)
T TIGR03158 272 GERGAIILDSLDEVNRLSDLLQQQG---LGDDIGRITGF------APKKDRER------AMQFDILLGTSTVDVGVDFKR 336 (357)
T ss_pred CCeEEEEECCHHHHHHHHHHHhhhC---CCceEEeeecC------CCHHHHHH------hccCCEEEEecHHhcccCCCC
Confidence 6799999999999999999999641 14577888887 47666654 357899999999999999998
Q ss_pred ccEEEEeCCCCcHHHHHHhhhccc
Q 000607 467 CNLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 467 ~~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
. .|| ++ |.+..+|+||.||+|
T Consensus 337 ~-~vi-~~-p~~~~~yiqR~GR~g 357 (357)
T TIGR03158 337 D-WLI-FS-ARDAAAFWQRLGRLG 357 (357)
T ss_pred c-eEE-EC-CCCHHHHhhhcccCC
Confidence 6 666 66 889999999999997
No 73
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.94 E-value=9.5e-26 Score=268.05 Aligned_cols=316 Identities=17% Similarity=0.224 Sum_probs=223.9
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-|+-|.++++.++++ |+++.||||.||++++.+... .. .| .+|||.|-.+|...|.+.++.. |+++..+.
T Consensus 18 FR~gQ~evI~~~l~g~d~lvvmPTGgGKSlCyQiPAl--l~-----~G-~TLVVSPLiSLM~DQV~~l~~~-Gi~A~~ln 88 (590)
T COG0514 18 FRPGQQEIIDALLSGKDTLVVMPTGGGKSLCYQIPAL--LL-----EG-LTLVVSPLISLMKDQVDQLEAA-GIRAAYLN 88 (590)
T ss_pred cCCCHHHHHHHHHcCCcEEEEccCCCCcchHhhhHHH--hc-----CC-CEEEECchHHHHHHHHHHHHHc-Cceeehhh
Confidence 588999999999998 899999999999999985433 21 23 6999999999999999999986 58888777
Q ss_pred CCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-C----cHHHHHHHHHHhhcc
Q 000607 101 GDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-H----QYACIMTEFYHRLLE 174 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-~----~~~~im~~f~~~~~~ 174 (1396)
+..+.+.|.. .|.... ...+++..+|+.|.+.-....+..-.++++++||||++... | .|.++- .+..
T Consensus 89 S~l~~~e~~~-v~~~l~~g~~klLyisPErl~~~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg-~l~~---- 162 (590)
T COG0514 89 STLSREERQQ-VLNQLKSGQLKLLYISPERLMSPRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLG-RLRA---- 162 (590)
T ss_pred cccCHHHHHH-HHHHHhcCceeEEEECchhhcChHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHH-HHHh----
Confidence 7655543322 233332 24899999999998654334455668999999999999954 2 344432 2221
Q ss_pred CCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.-+.+.+++||||-.. .+..+ +.+.|+-.-. ......++. |+-.+. ..
T Consensus 163 --~~~~~p~~AlTATA~~--------~v~~D---I~~~L~l~~~---------------~~~~~sfdR---pNi~~~-v~ 210 (590)
T COG0514 163 --GLPNPPVLALTATATP--------RVRDD---IREQLGLQDA---------------NIFRGSFDR---PNLALK-VV 210 (590)
T ss_pred --hCCCCCEEEEeCCCCh--------HHHHH---HHHHhcCCCc---------------ceEEecCCC---chhhhh-hh
Confidence 1125679999888643 22222 2233322110 000000111 100000 00
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
.. .
T Consensus 211 ~~--------------------------------------------------------------------~--------- 213 (590)
T COG0514 211 EK--------------------------------------------------------------------G--------- 213 (590)
T ss_pred hc--------------------------------------------------------------------c---------
Confidence 00 0
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
....++..+.+ ........+||||.+|..++.+++.|.+
T Consensus 214 --------------------------------~~~~q~~fi~~----~~~~~~~~GIIYc~sRk~~E~ia~~L~~----- 252 (590)
T COG0514 214 --------------------------------EPSDQLAFLAT----VLPQLSKSGIIYCLTRKKVEELAEWLRK----- 252 (590)
T ss_pred --------------------------------cHHHHHHHHHh----hccccCCCeEEEEeeHHhHHHHHHHHHH-----
Confidence 00011111111 0123566799999999999999999996
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
.|+++...||. |+..+|..+.++|..+++.|+|||.+.+.|||-|++..|||||+|.|..+|.|-.|||||.|
T Consensus 253 ~g~~a~~YHaG------l~~~eR~~~q~~f~~~~~~iiVAT~AFGMGIdKpdVRfViH~~lP~s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 253 NGISAGAYHAG------LSNEERERVQQAFLNDEIKVMVATNAFGMGIDKPDVRFVIHYDLPGSIESYYQETGRAGRDGL 326 (590)
T ss_pred CCCceEEecCC------CCHHHHHHHHHHHhcCCCcEEEEeccccCccCCCCceEEEEecCCCCHHHHHHHHhhccCCCC
Confidence 48999999997 79999999999999999999999999999999999999999999999999999999999999
Q ss_pred -CcEEEEEecCCcchH
Q 000607 494 -SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~ 508 (1396)
+.+++++..+|....
T Consensus 327 ~a~aill~~~~D~~~~ 342 (590)
T COG0514 327 PAEAILLYSPEDIRWQ 342 (590)
T ss_pred cceEEEeeccccHHHH
Confidence 688999987765533
No 74
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=4.8e-26 Score=288.46 Aligned_cols=304 Identities=17% Similarity=0.118 Sum_probs=201.6
Q ss_pred HHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCe----EEEE
Q 000607 25 YQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLK----VGKY 99 (1396)
Q Consensus 25 yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~----v~~~ 99 (1396)
+-.++++.+.++ ++|+.++||||||.++...+... . ..+.++++++||+.++.|.++.+.+..+.. |+..
T Consensus 6 ~~~~i~~~l~~~~~vIi~a~TGSGKTT~vpl~lL~~---~--~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~ 80 (819)
T TIGR01970 6 VLPALRDALAAHPQVVLEAPPGAGKSTAVPLALLDA---P--GIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYR 80 (819)
T ss_pred HHHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHHHh---h--ccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEE
Confidence 444566666554 79999999999999988755432 1 134579999999999999999997666543 4433
Q ss_pred eCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccc-ccCCCcHHHHHHHHHHhhccCCCC
Q 000607 100 WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH-ARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
.+..+ ....+.+|+|+|+++|++.+.+. ..++++++|||||+|. ..+..---.++..... ...
T Consensus 81 vr~~~----------~~s~~t~I~v~T~G~Llr~l~~d-~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~-----~lr 144 (819)
T TIGR01970 81 VRGEN----------KVSRRTRLEVVTEGILTRMIQDD-PELDGVGALIFDEFHERSLDADLGLALALDVQS-----SLR 144 (819)
T ss_pred Ecccc----------ccCCCCcEEEECCcHHHHHHhhC-cccccCCEEEEeccchhhhccchHHHHHHHHHH-----hcC
Confidence 33211 11235799999999999988764 5689999999999995 4432111111222221 112
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADEL 257 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l 257 (1396)
...++++||||+... .+...++ +.+...... ..|. ...|.... .. .
T Consensus 145 ~dlqlIlmSATl~~~--------------~l~~~l~~~~vI~~~gr-------~~pV--e~~y~~~~--~~--~------ 191 (819)
T TIGR01970 145 EDLKILAMSATLDGE--------------RLSSLLPDAPVVESEGR-------SFPV--EIRYLPLR--GD--Q------ 191 (819)
T ss_pred CCceEEEEeCCCCHH--------------HHHHHcCCCcEEEecCc-------ceee--eeEEeecc--hh--h------
Confidence 346899999998431 1233332 222211000 0010 01111000 00 0
Q ss_pred HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHH
Q 000607 258 AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGS 337 (1396)
Q Consensus 258 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (1396)
.+.
T Consensus 192 -----------------------------------------------------------------------------~~~ 194 (819)
T TIGR01970 192 -----------------------------------------------------------------------------RLE 194 (819)
T ss_pred -----------------------------------------------------------------------------hHH
Confidence 000
Q ss_pred HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCc
Q 000607 338 DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTW 417 (1396)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~ 417 (1396)
......+..++.. ...++|||++++..+..++..|++... .++
T Consensus 195 -------------------------------~~v~~~l~~~l~~----~~g~iLVFlpg~~eI~~l~~~L~~~~~--~~~ 237 (819)
T TIGR01970 195 -------------------------------DAVSRAVEHALAS----ETGSILVFLPGQAEIRRVQEQLAERLD--SDV 237 (819)
T ss_pred -------------------------------HHHHHHHHHHHHh----cCCcEEEEECCHHHHHHHHHHHHhhcC--CCc
Confidence 0000112222222 246799999999999999999986321 368
Q ss_pred eeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc------------------H
Q 000607 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT------------------V 479 (1396)
Q Consensus 418 ~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s------------------~ 479 (1396)
.+..+||. |++.+|.++++.|++|+.+|||||+++|+|||||++++||+++.+.. .
T Consensus 238 ~v~pLHg~------L~~~eq~~~~~~~~~G~rkVlVATnIAErgItIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iSk 311 (819)
T TIGR01970 238 LICPLYGE------LSLAAQDRAIKPDPQGRRKVVLATNIAETSLTIEGIRVVIDSGLARVARFDPKTGITRLETVRISQ 311 (819)
T ss_pred EEEEecCC------CCHHHHHHHHhhcccCCeEEEEecchHhhcccccCceEEEEcCcccccccccccCCceeeEEEECH
Confidence 88999998 79999999999999999999999999999999999999999998753 3
Q ss_pred HHHHHhhhcccCCC-CcEEEEEec
Q 000607 480 CSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 480 ~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
.+|+||+|||||.+ |.|+.|+++
T Consensus 312 asa~QR~GRAGR~~~G~cyrL~t~ 335 (819)
T TIGR01970 312 ASATQRAGRAGRLEPGVCYRLWSE 335 (819)
T ss_pred HHHHhhhhhcCCCCCCEEEEeCCH
Confidence 46999999999975 788888863
No 75
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.94 E-value=9.3e-26 Score=254.55 Aligned_cols=318 Identities=20% Similarity=0.193 Sum_probs=226.0
Q ss_pred cccchHHHHHHHHHHhc-C-CEEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---c
Q 000607 19 LPFARNYQLEALENALK-Q-NTIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---T 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-~-n~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~ 92 (1396)
...+.|.|.-+++..+= | |.+|+.+|+||||+++-+ -|..++. .+++.+||||.++|++|-++.|+.- +
T Consensus 214 ~~eLlPVQ~laVe~GLLeG~nllVVSaTasGKTLIgElAGi~~~l~-----~g~KmlfLvPLVALANQKy~dF~~rYs~L 288 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEGENLLVVSATASGKTLIGELAGIPRLLS-----GGKKMLFLVPLVALANQKYEDFKERYSKL 288 (830)
T ss_pred cceecchhhhhhhhccccCCceEEEeccCCCcchHHHhhCcHHHHh-----CCCeEEEEehhHHhhcchHHHHHHHhhcc
Confidence 34588999999988764 4 899999999999999987 3554432 5788999999999999999999853 5
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---CcHHHHHHHHH
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQYACIMTEFY 169 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~f~ 169 (1396)
++++.+-.|...........-.....++||||+||+-+.-+|+.+ -.+.++..+|+||.|.+.+. |.-...+....
T Consensus 289 glkvairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-~~lgdiGtVVIDEiHtL~deERG~RLdGLI~RLr 367 (830)
T COG1202 289 GLKVAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-KDLGDIGTVVIDEIHTLEDEERGPRLDGLIGRLR 367 (830)
T ss_pred cceEEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-CcccccceEEeeeeeeccchhcccchhhHHHHHH
Confidence 778877777644433222122233347999999999998888877 67899999999999998863 22222222221
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
. .-+..++++||||..+.. +|...|+++..-. ...|-|-++.+.+....
T Consensus 368 ~------l~~~AQ~i~LSATVgNp~-------------elA~~l~a~lV~y-------~~RPVplErHlvf~~~e----- 416 (830)
T COG1202 368 Y------LFPGAQFIYLSATVGNPE-------------ELAKKLGAKLVLY-------DERPVPLERHLVFARNE----- 416 (830)
T ss_pred H------hCCCCeEEEEEeecCChH-------------HHHHHhCCeeEee-------cCCCCChhHeeeeecCc-----
Confidence 1 123468999999997743 4556666654432 11122222222222100
Q ss_pred HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchH
Q 000607 250 YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGE 329 (1396)
Q Consensus 250 ~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 329 (1396)
T Consensus 417 -------------------------------------------------------------------------------- 416 (830)
T COG1202 417 -------------------------------------------------------------------------------- 416 (830)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh-h----cCCCCeeEEEEechHHHHHHHH
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE-Y----RGVEDIRCIIFVERVITAIVLQ 404 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~-~----~~~~~~k~IIFv~~r~ta~~L~ 404 (1396)
+.|...+..+.+. | ...-..++|||+++|..+..|+
T Consensus 417 ---------------------------------------~eK~~ii~~L~k~E~~~~sskg~rGQtIVFT~SRrr~h~lA 457 (830)
T COG1202 417 ---------------------------------------SEKWDIIARLVKREFSTESSKGYRGQTIVFTYSRRRCHELA 457 (830)
T ss_pred ---------------------------------------hHHHHHHHHHHHHHHhhhhccCcCCceEEEecchhhHHHHH
Confidence 1111111111111 0 0112467999999999999999
Q ss_pred HHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE---Ee-CCCCcHH
Q 000607 405 SLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI---MF-DPSRTVC 480 (1396)
Q Consensus 405 ~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI---~f-D~p~s~~ 480 (1396)
..|.. +|++....|+. |+..+|+.+...|.++++.++|+|.+++.|+|+|+-.+|. -. .-..|+.
T Consensus 458 ~~L~~-----kG~~a~pYHaG------L~y~eRk~vE~~F~~q~l~~VVTTAAL~AGVDFPASQVIFEsLaMG~~WLs~~ 526 (830)
T COG1202 458 DALTG-----KGLKAAPYHAG------LPYKERKSVERAFAAQELAAVVTTAALAAGVDFPASQVIFESLAMGIEWLSVR 526 (830)
T ss_pred HHhhc-----CCcccccccCC------CcHHHHHHHHHHHhcCCcceEeehhhhhcCCCCchHHHHHHHHHcccccCCHH
Confidence 99996 58998888876 7999999999999999999999999999999999866553 12 2355899
Q ss_pred HHHHhhhcccCCC----CcEEEEEecC
Q 000607 481 SFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 481 ~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
.|.|+.|||||.+ +++++|++.|
T Consensus 527 EF~QM~GRAGRp~yHdrGkVyllvepg 553 (830)
T COG1202 527 EFQQMLGRAGRPDYHDRGKVYLLVEPG 553 (830)
T ss_pred HHHHHhcccCCCCcccCceEEEEecCC
Confidence 9999999999987 7899999877
No 76
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.94 E-value=9e-26 Score=266.29 Aligned_cols=317 Identities=20% Similarity=0.290 Sum_probs=213.7
Q ss_pred cccCCCcccchHHHHHHHHHHhcC-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 13 EVSADTLPFARNYQLEALENALKQ-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 13 ~~~~~~~~~~r~yQ~e~~~~~l~~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
.......+.+...|+.++..+... |-++.+|.|||||.+|++.+....+ .|..+..+|||--|+.|.+
T Consensus 254 ~~~~~LPF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~-----~G~Q~ALMAPTEILA~QH~ 328 (677)
T COG1200 254 KFLAALPFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIE-----AGYQAALMAPTEILAEQHY 328 (677)
T ss_pred HHHHhCCCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHH-----cCCeeEEeccHHHHHHHHH
Confidence 334445567999999999999862 6899999999999999987765544 6788999999999999999
Q ss_pred HHHHHhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH
Q 000607 86 EAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA 162 (1396)
Q Consensus 86 ~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~ 162 (1396)
+.+.+++ +++|..++|.+.........-.-.-...+|+|+|...+.+ .+.+.++.|+|+||=|++.-.
T Consensus 329 ~~~~~~l~~~~i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd-----~V~F~~LgLVIiDEQHRFGV~---- 399 (677)
T COG1200 329 ESLRKWLEPLGIRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQD-----KVEFHNLGLVIIDEQHRFGVH---- 399 (677)
T ss_pred HHHHHHhhhcCCeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhc-----ceeecceeEEEEeccccccHH----
Confidence 9999875 7899999998755432222222222369999999986654 455889999999999999753
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~ 242 (1396)
++.. +++.....|++|.|||||+...- .-...... +.+-+.. .|.....+..+-.
T Consensus 400 ---QR~~---L~~KG~~~Ph~LvMTATPIPRTL--------------Alt~fgDl----dvS~IdE-lP~GRkpI~T~~i 454 (677)
T COG1200 400 ---QRLA---LREKGEQNPHVLVMTATPIPRTL--------------ALTAFGDL----DVSIIDE-LPPGRKPITTVVI 454 (677)
T ss_pred ---HHHH---HHHhCCCCCcEEEEeCCCchHHH--------------HHHHhccc----cchhhcc-CCCCCCceEEEEe
Confidence 2221 11122227999999999987531 11111000 1111111 1111111110000
Q ss_pred CCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh
Q 000607 243 DEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE 322 (1396)
Q Consensus 243 ~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~ 322 (1396)
+.+
T Consensus 455 ---~~~-------------------------------------------------------------------------- 457 (677)
T COG1200 455 ---PHE-------------------------------------------------------------------------- 457 (677)
T ss_pred ---ccc--------------------------------------------------------------------------
Confidence 000
Q ss_pred hcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechH-----
Q 000607 323 QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERV----- 397 (1396)
Q Consensus 323 ~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r----- 397 (1396)
+...+++.+..- -.++.++.|-|+-+
T Consensus 458 ------------------------------------------------~~~~v~e~i~~e-i~~GrQaY~VcPLIeESE~ 488 (677)
T COG1200 458 ------------------------------------------------RRPEVYERIREE-IAKGRQAYVVCPLIEESEK 488 (677)
T ss_pred ------------------------------------------------cHHHHHHHHHHH-HHcCCEEEEEecccccccc
Confidence 000000000000 01233444444322
Q ss_pred ---HHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeC
Q 000607 398 ---ITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD 474 (1396)
Q Consensus 398 ---~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD 474 (1396)
..|..++..|+... .+++++.+||. |+..+..+++++|++|+++|||||.|.|.|||+|+++++|..|
T Consensus 489 l~l~~a~~~~~~L~~~~---~~~~vgL~HGr------m~~~eKd~vM~~Fk~~e~~ILVaTTVIEVGVdVPnATvMVIe~ 559 (677)
T COG1200 489 LELQAAEELYEELKSFL---PELKVGLVHGR------MKPAEKDAVMEAFKEGEIDILVATTVIEVGVDVPNATVMVIEN 559 (677)
T ss_pred chhhhHHHHHHHHHHHc---ccceeEEEecC------CChHHHHHHHHHHHcCCCcEEEEeeEEEecccCCCCeEEEEec
Confidence 35566777777542 46889999998 7999999999999999999999999999999999999999888
Q ss_pred CCC-cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 475 PSR-TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 475 ~p~-s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.-. -..+.-|-|||+||.+ |.|+++....
T Consensus 560 AERFGLaQLHQLRGRVGRG~~qSyC~Ll~~~~ 591 (677)
T COG1200 560 AERFGLAQLHQLRGRVGRGDLQSYCVLLYKPP 591 (677)
T ss_pred hhhhhHHHHHHhccccCCCCcceEEEEEeCCC
Confidence 765 4789999999999977 5666666543
No 77
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.3e-25 Score=285.41 Aligned_cols=305 Identities=19% Similarity=0.153 Sum_probs=200.3
Q ss_pred HHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC----CeEEE
Q 000607 24 NYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD----LKVGK 98 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~----~~v~~ 98 (1396)
.+-.++++.+.++ ++|+.++||||||.++.+.+.. .. ..+.++++++||+.++.|.++.+.+..+ ..|+.
T Consensus 8 ~~~~~i~~~l~~~~~vvv~A~TGSGKTt~~pl~lL~---~~--~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy 82 (812)
T PRK11664 8 AVLPELLTALKTAPQVLLKAPTGAGKSTWLPLQLLQ---HG--GINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGY 82 (812)
T ss_pred HHHHHHHHHHHhCCCEEEEcCCCCCHHHHHHHHHHH---cC--CcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEE
Confidence 3444566666554 7999999999999998764432 11 1234799999999999999999876654 45554
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
..+.... ...+.+|+|+|+++|++.+... ..++++++|||||+|...-+.. ++..|.....+ ...
T Consensus 83 ~vr~~~~----------~~~~t~I~v~T~G~Llr~l~~d-~~L~~v~~IIlDEaHER~l~~D---l~L~ll~~i~~-~lr 147 (812)
T PRK11664 83 RMRAESK----------VGPNTRLEVVTEGILTRMIQRD-PELSGVGLVILDEFHERSLQAD---LALALLLDVQQ-GLR 147 (812)
T ss_pred EecCccc----------cCCCCcEEEEChhHHHHHHhhC-CCcCcCcEEEEcCCCccccccc---hHHHHHHHHHH-hCC
Confidence 4443211 1124689999999999988764 5789999999999997321111 11122211111 112
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADEL 257 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l 257 (1396)
...++++||||+... .+...+. ..+...... ..|. ...|... +.. .
T Consensus 148 ~~lqlilmSATl~~~--------------~l~~~~~~~~~I~~~gr-------~~pV--~~~y~~~--~~~--~------ 194 (812)
T PRK11664 148 DDLKLLIMSATLDND--------------RLQQLLPDAPVIVSEGR-------SFPV--ERRYQPL--PAH--Q------ 194 (812)
T ss_pred ccceEEEEecCCCHH--------------HHHHhcCCCCEEEecCc-------cccc--eEEeccC--chh--h------
Confidence 346899999998421 1233332 111111000 0010 0011100 000 0
Q ss_pred HHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHH
Q 000607 258 AMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGS 337 (1396)
Q Consensus 258 ~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 337 (1396)
++
T Consensus 195 -----------------------------------------------------------------------------~~- 196 (812)
T PRK11664 195 -----------------------------------------------------------------------------RF- 196 (812)
T ss_pred -----------------------------------------------------------------------------hH-
Confidence 00
Q ss_pred HHHHHHHHhccCCCccccCCCCcccCCCCCccHHH-HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCC
Q 000607 338 DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI-VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCT 416 (1396)
Q Consensus 338 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv-~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~ 416 (1396)
...+ ..+.+++.. ....+|||++++..+..+++.|++..+ .+
T Consensus 197 -------------------------------~~~v~~~l~~~l~~----~~g~iLVFlpg~~ei~~l~~~L~~~~~--~~ 239 (812)
T PRK11664 197 -------------------------------DEAVARATAELLRQ----ESGSLLLFLPGVGEIQRVQEQLASRVA--SD 239 (812)
T ss_pred -------------------------------HHHHHHHHHHHHHh----CCCCEEEEcCCHHHHHHHHHHHHHhcc--CC
Confidence 0000 011122221 356899999999999999999986322 26
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCc------------------
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRT------------------ 478 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s------------------ 478 (1396)
+.+..+||. |++.+|.++++.|++|+.+|||||+++|+|||||++++||+++.+..
T Consensus 240 ~~v~~Lhg~------l~~~eq~~~~~~~~~G~rkVlvATnIAErsLtIp~V~~VID~Gl~r~~~yd~~~g~~~L~~~~iS 313 (812)
T PRK11664 240 VLLCPLYGA------LSLAEQQKAILPAPAGRRKVVLATNIAETSLTIEGIRLVVDSGLERVARFDPKTGLTRLVTQRIS 313 (812)
T ss_pred ceEEEeeCC------CCHHHHHHHhccccCCCeEEEEecchHHhcccccCceEEEECCCcccccccccCCcceeEEEeec
Confidence 788899997 69999999999999999999999999999999999999999777653
Q ss_pred HHHHHHhhhcccCCC-CcEEEEEec
Q 000607 479 VCSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
..+|+||.|||||.+ |.|+.|+++
T Consensus 314 kasa~QR~GRaGR~~~G~cyrL~t~ 338 (812)
T PRK11664 314 QASMTQRAGRAGRLEPGICLHLYSK 338 (812)
T ss_pred hhhhhhhccccCCCCCcEEEEecCH
Confidence 358999999999976 788888763
No 78
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=99.94 E-value=1e-24 Score=255.78 Aligned_cols=414 Identities=15% Similarity=0.118 Sum_probs=260.0
Q ss_pred cchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+.+||++.+++..+ ...|+.+++|.|||.+.+..+..+.+.-+ --+.+|||||. .++.||..++..+. .+
T Consensus 205 ~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k--~~~paLIVCP~-Tii~qW~~E~~~w~p~~ 281 (923)
T KOG0387|consen 205 KLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGK--LTKPALIVCPA-TIIHQWMKEFQTWWPPF 281 (923)
T ss_pred HhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhccc--ccCceEEEccH-HHHHHHHHHHHHhCcce
Confidence 379999999998876 25999999999999999988887755322 12669999999 88899999999876 68
Q ss_pred eEEEEeCCCCcc----cCCccchHHhh-----ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH-
Q 000607 95 KVGKYWGDMGVD----FWDGATWKEEM-----SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI- 164 (1396)
Q Consensus 95 ~v~~~~G~~~~~----~~~~~~~~~~~-----~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i- 164 (1396)
+|.+++|..... ..+...|+..+ ....|+++|+..|.-. ...+.-..|+++|+||+|++.+.++-..+
T Consensus 282 rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~--~d~l~~~~W~y~ILDEGH~IrNpns~isla 359 (923)
T KOG0387|consen 282 RVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ--GDDLLGILWDYVILDEGHRIRNPNSKISLA 359 (923)
T ss_pred EEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc--CcccccccccEEEecCcccccCCccHHHHH
Confidence 999998875421 11122344433 3678999999988632 22344457999999999999986543333
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYD 243 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~ 243 (1396)
++. -+.++.++||+||+.++ +.+|.++++-..-. ..+..-+.+....|....-+-...
T Consensus 360 ckk----------i~T~~RiILSGTPiQNn-----------L~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs 418 (923)
T KOG0387|consen 360 CKK----------IRTVHRIILSGTPIQNN-----------LTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANAS 418 (923)
T ss_pred HHh----------ccccceEEeeCccccch-----------HHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCC
Confidence 222 23467899999999875 66676666542211 112222322222222222111111
Q ss_pred CCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhh
Q 000607 244 EIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQ 323 (1396)
Q Consensus 244 ~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~ 323 (1396)
+....+...-...|.++..+|...-...+... ...........+++
T Consensus 419 ~~qv~~aykca~~Lr~lI~PylLRR~K~dv~~----------------------------------~~Lp~K~E~VlfC~ 464 (923)
T KOG0387|consen 419 PRQVQTAYKCAVALRDLISPYLLRRMKSDVKG----------------------------------LKLPKKEEIVLFCR 464 (923)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhh----------------------------------ccCCCccceEEEEe
Confidence 11111111122233344444421110000000 00000111112222
Q ss_pred cccchHHHHHHHHH--HH-------------HHHHHHhccCCCccccCC--CCcccC---CCCCccHHHHHHHHHHhhhc
Q 000607 324 LDGFGETIIKKFGS--DA-------------SQALVTYVPSGAEWSIGD--DSKFNL---DSGLLTEKIVCLIESLLEYR 383 (1396)
Q Consensus 324 ~~~~~~~~~~~~l~--~~-------------~~~l~~~~~~~~~~~~~~--~~~~~~---~~~~~s~Kv~~L~~~L~~~~ 383 (1396)
+.........+|++ ++ ...++..|..... .... ...+.. .....+-|++.+..+|..+.
T Consensus 465 LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdl-l~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~ 543 (923)
T KOG0387|consen 465 LTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDL-LDRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK 543 (923)
T ss_pred ccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCccc-ccCcccccccCCCcCCChhhcchHHHHHHHHHHHh
Confidence 22222222222221 11 1122222221110 0010 111111 12234789999999999975
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe--eEEEEecccccc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV--NVIVATSILEEG 461 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~--nvLVaTsvleeG 461 (1396)
..+.++|+|.+++.+...|...|... .++.+..|.|.+ +...|+..+++|.+++. -.|++|.|++-|
T Consensus 544 -kqg~rvllFsqs~~mLdilE~fL~~~----~~ysylRmDGtT------~~~~R~~lVd~Fne~~s~~VFLLTTrvGGLG 612 (923)
T KOG0387|consen 544 -KQGDRVLLFSQSRQMLDILESFLRRA----KGYSYLRMDGTT------PAALRQKLVDRFNEDESIFVFLLTTRVGGLG 612 (923)
T ss_pred -hCCCEEEEehhHHHHHHHHHHHHHhc----CCceEEEecCCC------ccchhhHHHHhhcCCCceEEEEEEecccccc
Confidence 46669999999999999999999964 689999999986 77899999999998773 478899999999
Q ss_pred cCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcc
Q 000607 462 LDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDST 506 (1396)
Q Consensus 462 iDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~ 506 (1396)
+|+..+|-||.||+.|||..-.|++-||-|.|+ .++-|++.+..+
T Consensus 613 lNLTgAnRVIIfDPdWNPStD~QAreRawRiGQkkdV~VYRL~t~gTIE 661 (923)
T KOG0387|consen 613 LNLTGANRVIIFDPDWNPSTDNQARERAWRIGQKKDVVVYRLMTAGTIE 661 (923)
T ss_pred cccccCceEEEECCCCCCccchHHHHHHHhhcCccceEEEEEecCCcHH
Confidence 999999999999999999999999999999996 356677766443
No 79
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=5.9e-27 Score=255.97 Aligned_cols=329 Identities=17% Similarity=0.146 Sum_probs=239.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCe
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLK 95 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~ 95 (1396)
..|.|.|+..++-++++ +++..+-||||||.++++.+.+-+.... ..+-+++++.||++|+.|..+.++. .++++
T Consensus 42 ~~ptpiqRKTipliLe~~dvv~martgsgktaaf~ipm~e~Lk~~s-~~g~RalilsptreLa~qtlkvvkdlgrgt~lr 120 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGRDVVGMARTGSGKTAAFLIPMIEKLKSHS-QTGLRALILSPTRELALQTLKVVKDLGRGTKLR 120 (529)
T ss_pred CCCCchhcccccceeeccccceeeecCCcchhhHHHHHHHHHhhcc-ccccceeeccCcHHHHHHHHHHHHHhccccchh
Confidence 34899999999999998 7889999999999999985543322211 3567899999999999998888775 45788
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
...++|++... ++|.....+.|||++||++++...-.-.+.++.+.++||||++++... -|+.-+.+.. ..
T Consensus 121 ~s~~~ggD~~e----eqf~~l~~npDii~ATpgr~~h~~vem~l~l~sveyVVfdEadrlfem-gfqeql~e~l----~r 191 (529)
T KOG0337|consen 121 QSLLVGGDSIE----EQFILLNENPDIIIATPGRLLHLGVEMTLTLSSVEYVVFDEADRLFEM-GFQEQLHEIL----SR 191 (529)
T ss_pred hhhhcccchHH----HHHHHhccCCCEEEecCceeeeeehheeccccceeeeeehhhhHHHhh-hhHHHHHHHH----Hh
Confidence 88788865443 678888889999999999998776666688999999999999999863 1222222222 22
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc-cccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN-FIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~-~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
.+..+ +.+.+|||..+.- . ++.+ ....|....+ +. ... +.
T Consensus 192 l~~~~-QTllfSatlp~~l------------v-----------------~fakaGl~~p~lVRl--dv---etk----is 232 (529)
T KOG0337|consen 192 LPESR-QTLLFSATLPRDL------------V-----------------DFAKAGLVPPVLVRL--DV---ETK----IS 232 (529)
T ss_pred CCCcc-eEEEEeccCchhh------------H-----------------HHHHccCCCCceEEe--eh---hhh----cc
Confidence 33333 8999999986521 0 0000 0001111000 00 000 00
Q ss_pred HHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHH
Q 000607 255 DELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKK 334 (1396)
Q Consensus 255 ~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 334 (1396)
..+
T Consensus 233 e~l----------------------------------------------------------------------------- 235 (529)
T KOG0337|consen 233 ELL----------------------------------------------------------------------------- 235 (529)
T ss_pred hhh-----------------------------------------------------------------------------
Confidence 000
Q ss_pred HHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC
Q 000607 335 FGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH 414 (1396)
Q Consensus 335 ~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~ 414 (1396)
+-.. . ......|...|+.++.... .+.++||||.++..++.+..+|...
T Consensus 236 ---------k~~f------~----------~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~---- 284 (529)
T KOG0337|consen 236 ---------KVRF------F----------RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDF---- 284 (529)
T ss_pred ---------hhhe------e----------eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhc----
Confidence 0000 0 0001568888888887753 4678999999999999999999974
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC-
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN- 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g- 493 (1396)
|+.+..+.|+ |.+..|...+.+|+.++.++||.|+++.+|+|||-.+.||+||.|....-|+||.||+.|+|
T Consensus 285 -g~~~s~iyss------lD~~aRk~~~~~F~~~k~~~lvvTdvaaRG~diplldnvinyd~p~~~klFvhRVgr~aragr 357 (529)
T KOG0337|consen 285 -GGEGSDIYSS------LDQEARKINGRDFRGRKTSILVVTDVAARGLDIPLLDNVINYDFPPDDKLFVHRVGRVARAGR 357 (529)
T ss_pred -CCCccccccc------cChHhhhhccccccCCccceEEEehhhhccCCCccccccccccCCCCCceEEEEecchhhccc
Confidence 7777777776 69999999999999999999999999999999999999999999999999999999999988
Q ss_pred -CcEEEEEecCCcchHHHHH
Q 000607 494 -SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 494 -s~~i~lv~~~~~~~~~~i~ 512 (1396)
+.+|.+|...+.-..-++.
T Consensus 358 tg~aYs~V~~~~~~yl~DL~ 377 (529)
T KOG0337|consen 358 TGRAYSLVASTDDPYLLDLQ 377 (529)
T ss_pred cceEEEEEecccchhhhhhh
Confidence 4678888766544443333
No 80
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=99.94 E-value=4.9e-24 Score=258.49 Aligned_cols=436 Identities=16% Similarity=0.146 Sum_probs=252.3
Q ss_pred ccchHHHHHHHHHHh--c--C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC----CCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENAL--K--Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP----SPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l--~--~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~----~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+|.||+|.+.+.- + + +.|+|+++|.|||++++..+..=....+.. .....+|+||. .|+..|..++.+
T Consensus 974 a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPs-TLtGHW~~E~~k 1052 (1549)
T KOG0392|consen 974 AKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPS-TLTGHWKSEVKK 1052 (1549)
T ss_pred HHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCc-hhhhHHHHHHHH
Confidence 458999999998654 2 2 899999999999999987544211111111 33448999999 999999999999
Q ss_pred hcCC-eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 91 HTDL-KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 91 ~~~~-~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
++++ +|..|.|.-. .+...+...++++|+|++|+++.+.+. ++.-.+|+++|+||.|-+++... .+..+.
T Consensus 1053 f~pfL~v~~yvg~p~----~r~~lR~q~~~~~iiVtSYDv~RnD~d--~l~~~~wNYcVLDEGHVikN~kt---kl~kav 1123 (1549)
T KOG0392|consen 1053 FFPFLKVLQYVGPPA----ERRELRDQYKNANIIVTSYDVVRNDVD--YLIKIDWNYCVLDEGHVIKNSKT---KLTKAV 1123 (1549)
T ss_pred hcchhhhhhhcCChH----HHHHHHhhccccceEEeeHHHHHHHHH--HHHhcccceEEecCcceecchHH---HHHHHH
Confidence 9874 8888888632 223456667789999999999998766 55556899999999999987421 111222
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCCCCchh
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYDEIPHA 248 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~~~~~~ 248 (1396)
.. -...+.+.||+||+.++ +.+|.++++--.-. ...+.++..-..+|......- .....
T Consensus 1124 kq------L~a~hRLILSGTPIQNn-----------vleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~---K~Ssk 1183 (1549)
T KOG0392|consen 1124 KQ------LRANHRLILSGTPIQNN-----------VLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDP---KSSSK 1183 (1549)
T ss_pred HH------HhhcceEEeeCCCcccC-----------HHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCc---ccchh
Confidence 11 12346889999999976 33344433321111 011222222222222111100 01111
Q ss_pred hHHHHHHHHHHHHHHHHhhhhh-h------chhhHH-------HHHHHHHHHH-HHHHHH--------HHHHhHH--HHH
Q 000607 249 LYTHLADELAMIELKHTRSLEN-L------DLNEAQ-------AELIRKKVSK-INSTLL--------YCLSELG--VWL 303 (1396)
Q Consensus 249 ~~~~l~~~l~~l~~~~~~~l~~-~------~~~~~~-------~~~~~~~~~~-~~~~~~--------~~~~~lg--~~~ 303 (1396)
-.+.-...++.++++...++-+ + ++.+.. +...++++-. +..... .....+| .-.
T Consensus 1184 e~EaG~lAleaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~H 1263 (1549)
T KOG0392|consen 1184 EQEAGVLALEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTH 1263 (1549)
T ss_pred HHHhhHHHHHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHH
Confidence 1111223445555443332221 0 000000 0001111110 000000 0011111 111
Q ss_pred HHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhc
Q 000607 304 ALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYR 383 (1396)
Q Consensus 304 a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~ 383 (1396)
...+.+|+.+..++..+.-.-....-..+...+...... +.+-..+||+.+|.++|.+++
T Consensus 1264 vFqaLqYlrKLcnHpaLvlt~~hp~la~i~~~l~~~~~~--------------------LHdi~hspKl~AL~qLL~eCG 1323 (1549)
T KOG0392|consen 1264 VFQALQYLRKLCNHPALVLTPVHPDLAAIVSHLAHFNSS--------------------LHDIQHSPKLSALKQLLSECG 1323 (1549)
T ss_pred HHHHHHHHHHhcCCcceeeCCCcchHHHHHHHHHHhhhh--------------------HHHhhhchhHHHHHHHHHHhC
Confidence 112233332222221110000000000011111111111 111123899999999999864
Q ss_pred CC-------------CCeeEEEEechHHHHHHHHHHHHh-hcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-C
Q 000607 384 GV-------------EDIRCIIFVERVITAIVLQSLLSE-LLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-L 448 (1396)
Q Consensus 384 ~~-------------~~~k~IIFv~~r~ta~~L~~~L~~-~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~ 448 (1396)
.. ...|++|||+-+.+.+.+.+-|-+ +. +.+..-.+.|+. ++.+|++++++|.++ .
T Consensus 1324 ig~~~~~~~g~~s~vsqHRiLIFcQlK~mlDlVekDL~k~~m---psVtymRLDGSV------pp~~R~kiV~~FN~Dpt 1394 (1549)
T KOG0392|consen 1324 IGNNSDSEVGTPSDVSQHRILIFCQLKSMLDLVEKDLFKKYM---PSVTYMRLDGSV------PPGDRQKIVERFNEDPT 1394 (1549)
T ss_pred CCCCCcccccCcchhccceeEEeeeHHHHHHHHHHHHhhhhc---CceeEEEecCCC------CcHHHHHHHHHhcCCCc
Confidence 21 468999999999999999875553 32 234445677774 899999999999998 5
Q ss_pred eeEEE-EecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEEecCCcchHHHHHHHHH
Q 000607 449 VNVIV-ATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMVKSGDSTTQSRLENYLA 516 (1396)
Q Consensus 449 ~nvLV-aTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv~~~~~~~~~~i~~~~~ 516 (1396)
+.||+ +|-|++-|+|+..++.||+++..|||-.-.|.+.||+|.|++ ++-++++|. ..+++..+++
T Consensus 1395 IDvLlLTThVGGLGLNLTGADTVVFvEHDWNPMrDLQAMDRAHRIGQKrvVNVyRlItrGT--LEEKVMgLQk 1465 (1549)
T KOG0392|consen 1395 IDVLLLTTHVGGLGLNLTGADTVVFVEHDWNPMRDLQAMDRAHRIGQKRVVNVYRLITRGT--LEEKVMGLQK 1465 (1549)
T ss_pred eeEEEEeeeccccccccCCCceEEEEecCCCchhhHHHHHHHHhhcCceeeeeeeehhccc--HHHHHhhHHH
Confidence 77655 789999999999999999999999999999999999999973 556666663 3334444433
No 81
>PRK09401 reverse gyrase; Reviewed
Probab=99.93 E-value=5.3e-25 Score=288.35 Aligned_cols=303 Identities=14% Similarity=0.114 Sum_probs=197.3
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|+++|.++++.++++ |+++++|||+|||..++.++..+. ..+++++||+||++|+.|+++.++.+. +.
T Consensus 78 G~~pt~iQ~~~i~~il~g~dv~i~ApTGsGKT~f~l~~~~~l~-----~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~ 152 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGESFAIIAPTGVGKTTFGLVMSLYLA-----KKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGC 152 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCCcEEEEcCCCCCHHHHHHHHHHHHH-----hcCCeEEEEeccHHHHHHHHHHHHHHhhhcCc
Confidence 346999999999999998 899999999999975443333221 246789999999999999999999875 56
Q ss_pred eEEEEeCCCCcccCCc-cchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC-cHHHHHH--HH-
Q 000607 95 KVGKYWGDMGVDFWDG-ATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH-QYACIMT--EF- 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~-~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~-~~~~im~--~f- 168 (1396)
.+..+.|+.+...... ..+.... ..++|+|+||+.|.+.+. .+...++++||+||||++.+.. ...+++. +|
T Consensus 153 ~~~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~~~--~l~~~~~~~lVvDEaD~~L~~~k~id~~l~~lGF~ 230 (1176)
T PRK09401 153 GVKILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKNFD--ELPKKKFDFVFVDDVDAVLKSSKNIDKLLYLLGFS 230 (1176)
T ss_pred eEEEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHHHH--hccccccCEEEEEChHHhhhcccchhhHHHhCCCC
Confidence 6666776543221111 1222222 358999999999998876 4556679999999999998521 1111111 11
Q ss_pred -------HHhh-------------------ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccC
Q 000607 169 -------YHRL-------------------LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCAS 222 (1396)
Q Consensus 169 -------~~~~-------------------~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~ 222 (1396)
+... +........+++.+|||....... ...+...++ +.+
T Consensus 231 ~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~---------~~l~~~ll~---~~v-- 296 (1176)
T PRK09401 231 EEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNR---------VKLFRELLG---FEV-- 296 (1176)
T ss_pred HHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchH---------HHHhhccce---EEe--
Confidence 1000 000001134455666665321100 000000000 000
Q ss_pred hhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 000607 223 ESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVW 302 (1396)
Q Consensus 223 ~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~ 302 (1396)
.. ..
T Consensus 297 ------------------~~---~~------------------------------------------------------- 300 (1176)
T PRK09401 297 ------------------GS---PV------------------------------------------------------- 300 (1176)
T ss_pred ------------------cC---cc-------------------------------------------------------
Confidence 00 00
Q ss_pred HHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh
Q 000607 303 LALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY 382 (1396)
Q Consensus 303 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~ 382 (1396)
....++.+.... ...|...|.+++...
T Consensus 301 ---------------------------------------------------~~~rnI~~~yi~--~~~k~~~L~~ll~~l 327 (1176)
T PRK09401 301 ---------------------------------------------------FYLRNIVDSYIV--DEDSVEKLVELVKRL 327 (1176)
T ss_pred ---------------------------------------------------cccCCceEEEEE--cccHHHHHHHHHHhc
Confidence 000000000000 014566677777654
Q ss_pred cCCCCeeEEEEechHHH---HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEE----e
Q 000607 383 RGVEDIRCIIFVERVIT---AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVA----T 455 (1396)
Q Consensus 383 ~~~~~~k~IIFv~~r~t---a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVa----T 455 (1396)
+..+||||+++.. ++.++..|+. .|+++..+||+ | .+.+++|++|+++|||| |
T Consensus 328 ----~~~~LIFv~t~~~~~~ae~l~~~L~~-----~gi~v~~~hg~------l-----~~~l~~F~~G~~~VLVatas~t 387 (1176)
T PRK09401 328 ----GDGGLIFVPSDKGKEYAEELAEYLED-----LGINAELAISG------F-----ERKFEKFEEGEVDVLVGVASYY 387 (1176)
T ss_pred ----CCCEEEEEecccChHHHHHHHHHHHH-----CCCcEEEEeCc------H-----HHHHHHHHCCCCCEEEEecCCC
Confidence 2479999999877 9999999997 48999999997 4 34569999999999999 6
Q ss_pred cccccccCCCc-ccEEEEeCCCC------cHHHHHHhhhcccC
Q 000607 456 SILEEGLDVQS-CNLVIMFDPSR------TVCSFIQSRGRARM 491 (1396)
Q Consensus 456 svleeGiDIp~-~~lVI~fD~p~------s~~~yiQr~GRA~R 491 (1396)
+++++|||+|+ +.+||+||.|. ....|.+|.||+-+
T Consensus 388 dv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~~~~~~r~~~ 430 (1176)
T PRK09401 388 GVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAPPFLLLRLLS 430 (1176)
T ss_pred CceeecCCCCcceeEEEEeCCCCEEEeccccccCHHHHHHHHh
Confidence 99999999999 89999999999 66789999999853
No 82
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=99.93 E-value=2.4e-27 Score=304.32 Aligned_cols=606 Identities=21% Similarity=0.165 Sum_probs=390.4
Q ss_pred HHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHH-hcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCC
Q 000607 25 YQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYL-LRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDM 103 (1396)
Q Consensus 25 yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~-~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~ 103 (1396)
+|..-.+.+..-+++....++-+++++........... +.....--.+|.|+.+..+.+..+.++..+-..+..++|..
T Consensus 248 ~~~~~~~~~~~~e~~~~~~~~~~~~l~~~~~~~~v~k~~l~~~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 327 (1606)
T KOG0701|consen 248 LRDSKHEYIHQFEVLRKYEPHDVFRLIHESVCPLVDKEYLEKIETLSGIIFVDQRYTAYVLLELLREIFSNDPLFVTGAS 327 (1606)
T ss_pred hhhcchhhhcccceeeeecccccceeehhhcCchhhHHHHHhhhhhhheeecccchHHHHHHHHHHHhhccCcceeeccc
Confidence 33333444444589999999999999986543332211 11223344688999999999999999998877888899999
Q ss_pred CcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeE
Q 000607 104 GVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRI 183 (1396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~i 183 (1396)
+...|+...|...+....|+..+.+..++.|.+..+.+..++....++||+....+.|+..+..+.+.. ......-+
T Consensus 328 ~~~~~k~~~~~~~~~~~~vl~~~~~~~ln~L~~~~~~~e~~d~~~~~~~~~~~~~~~~~~~vq~~~r~~---~~~~~~~i 404 (1606)
T KOG0701|consen 328 GANLWKSFKNELELRQAEVLRRFHFHELNLLIATSVLEEGVDVPKCNLVVLFDAPTYYRSYVQKKGRAR---AADSYLVI 404 (1606)
T ss_pred cCccchhhHHHHHhhhHHHHHHHhhhhhhHHHHHHHHHhhcchhhhhhheeccCcchHHHHHHhhcccc---cchhhHHH
Confidence 999999999999999999999999999999999888999999999999999999999999999988532 22334568
Q ss_pred EEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH-HHHHHHHHHH-
Q 000607 184 FGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT-HLADELAMIE- 261 (1396)
Q Consensus 184 lgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~-~l~~~l~~l~- 261 (1396)
+|+|..++.-+.............+|.....+.+..+..+.++....+.+....+.++. |..... .....+....
T Consensus 405 ~~~t~~~~~~~~~s~~~~~~i~~~~l~~~~~~~v~~~~~~~e~~~~~~~~~~v~~~~~~---p~~~~~~~~~~~l~~~~~ 481 (1606)
T KOG0701|consen 405 LGETLSAVSLKNPSYAYTEQIPRPQLFLRLDANVNKYCARAELLKHVPFLSTVVLPVNS---PLKMCIVGLCLKLHKIGE 481 (1606)
T ss_pred HHhhhhhhhhcChhHhHHhhcccchhhcccccchHHHHHHHHhccCCCcceeEEEecCc---hHHHHHHHhHHHHHHhhh
Confidence 89998887755321111111223455566666666665666666777766666665554 211111 0111111110
Q ss_pred -HHH--------Hhhhhhhchhh--H----------HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcc---ccc
Q 000607 262 -LKH--------TRSLENLDLNE--A----------QAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCY---ESD 317 (1396)
Q Consensus 262 -~~~--------~~~l~~~~~~~--~----------~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~---~~~ 317 (1396)
+.. ...+...+... . ........++.+......+....|.||.....+..... +..
T Consensus 482 ~d~~~~~~gk~~~~~~~~~~~~~~ee~~~~~~~~~~~s~~~~~~~k~~~~~~~~~~~~~~~~c~~~~~~~~~~~~~~e~~ 561 (1606)
T KOG0701|consen 482 LDDCLHPKGKEPKACLEEVDTEEEEEVLQGFEPRPGSSKRRQQYLKHIARERNDSVPKADQPCYLYVIGLELTMPLPEER 561 (1606)
T ss_pred hhhhhcccccchHHhhhhhccccchhhccccCCCCCcccccccccchhHHHhcccccCCCCceeeeeeccceecCCchhc
Confidence 000 00000000000 0 00001111223333333444455555554333221000 000
Q ss_pred hh-------------hhhhc-----------------ccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCc----c-c
Q 000607 318 FF-------------AWEQL-----------------DGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSK----F-N 362 (1396)
Q Consensus 318 ~~-------------~~~~~-----------------~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~----~-~ 362 (1396)
.. ..+.+ ..........+.......- .. ..+ ......+. . .
T Consensus 562 n~~~r~~~~~~~~~~~~~~l~~~~i~~~~~~~~a~~sG~~~~~~l~~~~~~~~~~~--~~-~~~-~~f~~~~~~~v~~~~ 637 (1606)
T KOG0701|consen 562 NFERRKLYPPEDLTYCFGILTAKLIPKIPHFPVATRSGEVKVSLLLAFSEALVKSE--QL-DEI-QEFLNYIFTEVLRLA 637 (1606)
T ss_pred ccccccccCchhhhhhhcccchhhhcccccccceeccCchhHHHHHhhhhhhcchh--hc-cCc-chhcccchhhhhhhh
Confidence 00 00000 0000011111111110000 00 000 00000000 0 0
Q ss_pred CCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCce-eeEEecCCCCcCCCCHHHHHHHH
Q 000607 363 LDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWK-TKYIAGNNSGIQCQSRKKQNEIV 441 (1396)
Q Consensus 363 ~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~-~~~l~G~~~~~~~ms~~~r~~~l 441 (1396)
-......++...|+..|.-+....+.++++|+...-++-.+-..+-...+. ..++ ..++.+..+ .+|....|....
T Consensus 638 ~~~~~~~~~~~~l~~~llp~~~~~~~~~~~i~~k~l~~iv~~~~~~~~~~~-~~~~~~~~f~~~~~--~~~~~~~rn~~~ 714 (1606)
T KOG0701|consen 638 KINLEFDPKTAELIETLLPLNVLADKRAIIIVRKFLEAIVAPSDLMPIPSK-DEVRKAKYFDGEDS--QDAVGMYRNDDQ 714 (1606)
T ss_pred ccccccCCchhhHHHHhcccccccccchhhhHHHHHHHHhCcccccCCCCh-hhhhhhhhcccccc--hhhhhhhhcccc
Confidence 012334678888888888876778889999998877776655544433222 3344 333333322 223344788888
Q ss_pred HHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHHH
Q 000607 442 EEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNKM 521 (1396)
Q Consensus 442 ~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~m 521 (1396)
..|+.+++.++++|+...+|.|+--|+.|+++|.-.+..++.|++||++..++.+.++++.++......+-.....++.|
T Consensus 715 ~~~~~~~v~~~~~pss~~~g~~~~~~~~v~~~~~~~~i~~~~q~~~~~~~~~s~l~~~~~r~~~~~~~~l~~~s~~~e~~ 794 (1606)
T KOG0701|consen 715 PQFYVAEVLPLLAPSSLFPGLDYETFNEVYRFKYALTITSLNQSLLDVDHTSSRLNLLVPRGDNQKGSALPNSSSETERL 794 (1606)
T ss_pred cceeeeeeeeeccchhcCCCcchheeeeeeeccccchhhhccccccccccchhhhcccCchhhccccceeecccchhhhh
Confidence 88999999999999999999999999999999999999999999999999999999999988766655555555666677
Q ss_pred HHHHHhccCCCCCCCC-----CCCCCCcceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEEEEEc
Q 000607 522 RKEVLSHASLPCSPLN-----NHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGICTLYL 596 (1396)
Q Consensus 522 ~~~~~~~~~~~~~~~~-----~~~~~~~~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~~v~L 596 (1396)
+++.+.......-... ........|++..||+.++..+|..+|.+||+++++..|...++...-+.+.|.|.+.+
T Consensus 795 ~~es~~~~~~~h~~~~s~~~~~~~~p~~v~~v~~tg~~~s~~ta~~li~~~~~~i~~~~f~~~~~~~~~~~~~~~~~~~~ 874 (1606)
T KOG0701|consen 795 KDESLEHSLIIHPALASLWRRAVCLPEILYRVLLTGALVSLSTAVDLIPHDFSSILSKSFEKEASKSDKNKDEYSCDLAL 874 (1606)
T ss_pred hHHHhhccCCCCcCcchhhhhhccCcchheeeccccceeeeecccchhhhhhhhccchhhccccccCCCCccccceeecc
Confidence 7766554322211111 11234557899999999999999999999999999988887776655466789999999
Q ss_pred CCCCCCccc--cccCCHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccc
Q 000607 597 PNNCPIQTV--IAQGNIKTLKQAACLEACKKLHQIGALTDNLLPDIVVE 643 (1396)
Q Consensus 597 P~~~p~~~~--~~~~~~~~Ak~~aAf~a~~~L~~~g~ldd~L~P~~~~~ 643 (1396)
|..+|.+.. ......+.+++++++++|++||++|..+|++.|.....
T Consensus 875 ~~~~~~~~~~~~~~~~~~~~q~av~l~~~~~~~~~~~~~d~~~~n~~~~ 923 (1606)
T KOG0701|consen 875 PKENPVKQVLGKANQLDKVNQQAVELQECIQLHEVGALDDHLVFNKGVA 923 (1606)
T ss_pred cCCCchhhhhchhhhhhHHHhhhhhhhhhhhhhcccccccccccCcccc
Confidence 999999876 77778999999999999999999999999999976544
No 83
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=1.4e-23 Score=257.52 Aligned_cols=412 Identities=17% Similarity=0.164 Sum_probs=224.1
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
.+||||.+++..+.-. +.|+.|+||+|||++|++++. .... .++.++|++|+..|+.|+++.+.. ++|++|
T Consensus 68 glrpydVQlig~l~l~~G~Iaem~TGeGKTLta~Lpa~--l~aL---~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv 142 (762)
T TIGR03714 68 GMFPYDVQVLGAIVLHQGNIAEMKTGEGKTLTATMPLY--LNAL---TGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTV 142 (762)
T ss_pred CCCccHHHHHHHHHhcCCceeEecCCcchHHHHHHHHH--HHhh---cCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcE
Confidence 3678888877765543 589999999999999998753 2222 345699999999999999998865 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhc------CccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLS------YFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~------~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.++++.....|.... .....+++|+++||+.| .+.|... ...+..+.++|+||||.+.-+
T Consensus 143 ~~~~~~s~~~~~~~~~-rr~~y~~dIvygTp~~LgfDyLrD~l~~~~~~~~~r~l~~~IVDEaDsILiD----------- 210 (762)
T TIGR03714 143 SLGVVDDPDEEYDANE-KRKIYNSDIVYTTNSALGFDYLIDNLASNKEGKFLRPFNYVIVDEVDSVLLD----------- 210 (762)
T ss_pred EEEECCCCccccCHHH-HHHhCCCCEEEECchhhhhhHHHHHhhcchhhcccccCcEEEEecHhhHhhc-----------
Confidence 9887763333333222 22334799999999999 4544321 234578999999999988643
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeE-EeccC-----------hhhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKV-YTCAS-----------ESVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i-~~~~~-----------~~~l~~~~~~~~~~~ 237 (1396)
....| |.+|+.|.... +....+..+...|.... |.+.. .+.+.++..-+
T Consensus 211 -------eartp--liisg~~~~~~------~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G~~~~e~~~~~~---- 271 (762)
T TIGR03714 211 -------SAQTP--LVISGAPRVQS------NLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKGIEKAEQYFKID---- 271 (762)
T ss_pred -------cCcCC--eeeeCCCccch------HHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhHHHHHHHHcCCC----
Confidence 12345 34555543211 34445555555554321 21100 00000100000
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh-h------chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN-L------DLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAA 308 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~ 308 (1396)
-.|+... ......+...+.... .+-..++.. . .++.+.. ...+.+ .+-+.+.
T Consensus 272 ~l~~~~~--~~~~~~i~~al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~--~gr~~~---------------~GLhQai 332 (762)
T TIGR03714 272 NLYSEEY--FELVRHINLALRAHYLFKRNKDYVVTNGEVVLLDRITGRLL--EGTKLQ---------------SGIHQAI 332 (762)
T ss_pred ccCChhh--HHHHHHHHHHHHHHHHHhcCCceEEECCEEEEEECCCCcCC--CCCCcc---------------hHHHHHH
Confidence 0011000 000000111110000 000000000 0 0000000 000000 0001111
Q ss_pred HHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccC---CCCCccHHHH
Q 000607 309 ETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNL---DSGLLTEKIV 373 (1396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~---~~~~~s~Kv~ 373 (1396)
+.-...+..........-..+.+.+.|- ......+.+.+.-+ ...++.+.+ .+. -......|..
T Consensus 333 eaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef~~iY~l~-v~~IPt~kp~~r~d~~d~i~~~~~~K~~ 411 (762)
T TIGR03714 333 EAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEFIETYSLS-VVKIPTNKPIIRIDYPDKIYATLPEKLM 411 (762)
T ss_pred HhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHHHHHhCCC-EEEcCCCCCeeeeeCCCeEEECHHHHHH
Confidence 1100000000000000000001111110 00111222222111 011111111 111 1123467899
Q ss_pred HHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEE
Q 000607 374 CLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIV 453 (1396)
Q Consensus 374 ~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLV 453 (1396)
++++.+.+. ...+.++||||+++..++.++..|.. .++++..+||. +.++++..+..+|+.| .|+|
T Consensus 412 ai~~~i~~~-~~~~~pvLIft~s~~~se~ls~~L~~-----~gi~~~~L~a~------~~~~E~~ii~~ag~~g--~VlI 477 (762)
T TIGR03714 412 ATLEDVKEY-HETGQPVLLITGSVEMSEIYSELLLR-----EGIPHNLLNAQ------NAAKEAQIIAEAGQKG--AVTV 477 (762)
T ss_pred HHHHHHHHH-hhCCCCEEEEECcHHHHHHHHHHHHH-----CCCCEEEecCC------ChHHHHHHHHHcCCCC--eEEE
Confidence 999888774 24678899999999999999999997 48999999997 4777777777767666 7999
Q ss_pred EecccccccCCC---------cccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 454 ATSILEEGLDVQ---------SCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 454 aTsvleeGiDIp---------~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
||+++++|+||| .+++|++|++|..... +||+||+||.| |..+.+++.+
T Consensus 478 ATdmAgRGtDI~l~~~v~~~GGL~vIit~~~ps~rid-~qr~GRtGRqG~~G~s~~~is~e 537 (762)
T TIGR03714 478 ATSMAGRGTDIKLGKGVAELGGLAVIGTERMENSRVD-LQLRGRSGRQGDPGSSQFFVSLE 537 (762)
T ss_pred EccccccccCCCCCccccccCCeEEEEecCCCCcHHH-HHhhhcccCCCCceeEEEEEccc
Confidence 999999999999 8999999999988766 99999999998 5667777644
No 84
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.93 E-value=2.6e-23 Score=258.10 Aligned_cols=409 Identities=18% Similarity=0.173 Sum_probs=226.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|+++|.-+.-...+|+ |+.|.||+|||++|++++...+ + .++.+.|++||..|+.|.++.++. ++|+++
T Consensus 77 ~~p~~vQl~~~~~l~~G~-Iaem~TGeGKTL~a~lp~~l~a--l---~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v 150 (790)
T PRK09200 77 MRPYDVQLIGALVLHEGN-IAEMQTGEGKTLTATMPLYLNA--L---EGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTV 150 (790)
T ss_pred CCCchHHHHhHHHHcCCc-eeeecCCCcchHHHHHHHHHHH--H---cCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 457888888877666666 9999999999999998654221 1 467899999999999998888775 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhc------CccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLS------YFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~------~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.+.|+++.. .. .+....++|+++|++.| .|.|... ...+..+.++|+||||.+.=+
T Consensus 151 ~~i~g~~~~~----~~-r~~~y~~dIvygT~~~l~fDyLrd~~~~~~~~~~~r~~~~~IvDEaDsiLiD----------- 214 (790)
T PRK09200 151 GLNFSDIDDA----SE-KKAIYEADIIYTTNSELGFDYLRDNLADSKEDKVQRPLNYAIIDEIDSILLD----------- 214 (790)
T ss_pred EEEeCCCCcH----HH-HHHhcCCCEEEECCccccchhHHhccccchhhhcccccceEEEeccccceec-----------
Confidence 9999986531 11 23345799999999888 3444332 134578999999999998732
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccC-----------hhhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCAS-----------ESVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~-----------~~~l~~~~~~~~~~~ 237 (1396)
....| |.+|+.+.... +....+..+...|... -|.... .+.+..+..-+
T Consensus 215 -------ea~tp--liisg~~~~~~------~~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~~~~e~~~~i~---- 275 (790)
T PRK09200 215 -------EAQTP--LIISGKPRVQS------NLYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGIEKAESYFGID---- 275 (790)
T ss_pred -------cCCCc--eeeeCCCcccc------HHHHHHHHHHHhcccCCCeEEecCCCeEEecHhHHHHHHHhcCCc----
Confidence 12335 44555432211 3444454555544322 121100 00011110000
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh------h-chhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN------L-DLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAA 308 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~------~-~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~ 308 (1396)
-.|+... ......+...+.... ..-..++.. . .++.+... ..+.+. +-+.+.
T Consensus 276 ~l~~~~~--~~~~~~i~~Al~A~~~~~~d~dYiV~~~~v~ivD~~TGr~~~--gr~~s~---------------GlhQai 336 (790)
T PRK09200 276 NLYSLEH--QVLYRHIILALRAHVLFKRDVDYIVYDGEIVLVDRFTGRVLP--GRKLQD---------------GLHQAI 336 (790)
T ss_pred cccChhh--hHHHHHHHHHHHHHHHhhcCCcEEEECCEEEEEECCCCcCCC--CCccCh---------------HHHHHH
Confidence 0011000 000000111111000 000000000 0 00000000 000000 000000
Q ss_pred HHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccCC---CCCccHHHH
Q 000607 309 ETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNLD---SGLLTEKIV 373 (1396)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~s~Kv~ 373 (1396)
+.-...+..........-....+.+.|- ......+.+.+.-+ ...++.+.+ .+.. ......|..
T Consensus 337 eaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~l~-v~~IPt~kp~~r~d~~~~i~~~~~~K~~ 415 (790)
T PRK09200 337 EAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYNME-VVQIPTNRPIIRIDYPDKVFVTLDEKYK 415 (790)
T ss_pred HHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhCCc-EEECCCCCCcccccCCCeEEcCHHHHHH
Confidence 0000000000000000000001111110 00112222222111 011111111 1111 123367888
Q ss_pred HHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEE
Q 000607 374 CLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIV 453 (1396)
Q Consensus 374 ~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLV 453 (1396)
.|++.+... ...+.++||||+++..++.++..|.. .++++..+||.. .++++..+..+++.| +|+|
T Consensus 416 al~~~i~~~-~~~~~pvLIf~~t~~~se~l~~~L~~-----~gi~~~~L~~~~------~~~e~~~i~~ag~~g--~VlI 481 (790)
T PRK09200 416 AVIEEVKER-HETGRPVLIGTGSIEQSETFSKLLDE-----AGIPHNLLNAKN------AAKEAQIIAEAGQKG--AVTV 481 (790)
T ss_pred HHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCEEEecCCc------cHHHHHHHHHcCCCC--eEEE
Confidence 898888763 23578899999999999999999997 489999999973 677777777777766 7999
Q ss_pred EecccccccCC---Cccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 454 ATSILEEGLDV---QSCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 454 aTsvleeGiDI---p~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
||+++++|+|| |.+. +||+||.|.|.+.|+||+||+||.| |.++.+++.+
T Consensus 482 ATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~s~r~y~qr~GRtGR~G~~G~s~~~is~e 541 (790)
T PRK09200 482 ATNMAGRGTDIKLGEGVHELGGLAVIGTERMESRRVDLQLRGRSGRQGDPGSSQFFISLE 541 (790)
T ss_pred EccchhcCcCCCcccccccccCcEEEeccCCCCHHHHHHhhccccCCCCCeeEEEEEcch
Confidence 99999999999 6898 9999999999999999999999998 5667777644
No 85
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=1.1e-23 Score=266.00 Aligned_cols=154 Identities=19% Similarity=0.208 Sum_probs=115.0
Q ss_pred cccchHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 19 LPFARNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
...++++|.++++.+.+ +++++.++||||||.+++.++..... .+++++||+||++|+.|+.+.+++.++.
T Consensus 142 ~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~-----~g~~vLvLvPt~~L~~Q~~~~l~~~fg~ 216 (679)
T PRK05580 142 PPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLA-----QGKQALVLVPEIALTPQMLARFRARFGA 216 (679)
T ss_pred CCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHhCC
Confidence 44589999999999987 36999999999999999877765533 3678999999999999999999998899
Q ss_pred eEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---Cc-H-HHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQ-Y-ACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~-~~im~~f 168 (1396)
++..++|+.+... ....|..... ..+|+|+|++.+ +..+.++++||+||+|...-. .| | .+-+..+
T Consensus 217 ~v~~~~s~~s~~~-r~~~~~~~~~g~~~IVVgTrsal-------~~p~~~l~liVvDEeh~~s~~~~~~p~y~~r~va~~ 288 (679)
T PRK05580 217 PVAVLHSGLSDGE-RLDEWRKAKRGEAKVVIGARSAL-------FLPFKNLGLIIVDEEHDSSYKQQEGPRYHARDLAVV 288 (679)
T ss_pred CEEEEECCCCHHH-HHHHHHHHHcCCCCEEEeccHHh-------cccccCCCEEEEECCCccccccCcCCCCcHHHHHHH
Confidence 9999999865431 2244665544 579999999765 355789999999999987632 12 1 1111111
Q ss_pred HHhhccCCCCCCCeEEEEeccCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
. . ......++++||||.
T Consensus 289 r-a-----~~~~~~~il~SATps 305 (679)
T PRK05580 289 R-A-----KLENIPVVLGSATPS 305 (679)
T ss_pred H-h-----hccCCCEEEEcCCCC
Confidence 1 1 122356888899994
No 86
>PRK12371 ribonuclease III; Reviewed
Probab=99.92 E-value=1.7e-25 Score=243.70 Aligned_cols=134 Identities=28% Similarity=0.355 Sum_probs=116.6
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccc--cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcccc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQE--DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISN 1037 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~--~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n 1037 (1396)
.+|++.++|.|++. .++.+||||+|+.. ..||||||||||+||+++++.+||.+||+.+||+||.+|+.+|||
T Consensus 13 ~~le~~lgy~F~~~-----~Ll~~AlTH~S~~~~~~~~~eRLEFLGDavL~l~vs~~Lf~~~p~~~eG~Lt~~rs~lV~n 87 (235)
T PRK12371 13 SILEERTGHRFANK-----ERLERALTHSSARASKQGNYERLEFLGDRVLGLCVAEMLFEAFPDASEGELSVRLNQLVNA 87 (235)
T ss_pred HHHHHHHCCCCCCH-----HHHHHHHcCcCcccCCccchHhHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhCh
Confidence 46888999999886 89999999999875 359999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChh
Q 000607 1038 AALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGEN 1117 (1396)
Q Consensus 1038 ~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~ 1117 (1396)
.+|+++|.++||++||+ ..++... ..+ ....|.+||+|||+|||+|+|+|.+
T Consensus 88 ~~La~ia~~lgL~~~i~---------~~~~~~~-----------------~~~--~~~~~ilad~~EAliGAiylD~G~~ 139 (235)
T PRK12371 88 ETCAAIADEIGLHDLIR---------TGSDVKK-----------------LTG--KRLLNVRADVVEALIAAIYLDGGLE 139 (235)
T ss_pred HHHHHHHHHCCcHHHhc---------cCcchhh-----------------cCC--cccchHHHHHHHHHHHHHHHcCCHH
Confidence 99999999999999998 3333200 001 1245899999999999999999999
Q ss_pred HHHHHHhhc
Q 000607 1118 VGLIFLDRI 1126 (1396)
Q Consensus 1118 ~a~~~~~~l 1126 (1396)
.|.+|+..+
T Consensus 140 ~a~~~i~~~ 148 (235)
T PRK12371 140 AARPFIQRY 148 (235)
T ss_pred HHHHHHHHH
Confidence 999998665
No 87
>COG0571 Rnc dsRNA-specific ribonuclease [Transcription]
Probab=99.92 E-value=2.7e-25 Score=237.84 Aligned_cols=134 Identities=28% Similarity=0.396 Sum_probs=118.4
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccC----CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDF----HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~----~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..|.+.+++.|++. .++.+||||+|+.... |||||||||||||.++++.+||.+||+.+||.||.+|+.+|
T Consensus 9 ~~l~~~lg~~f~~~-----~lL~~AltH~S~~~e~~~~~~nERLEFLGDavL~l~vae~Lf~~yP~~~EG~Ls~~ra~lV 83 (235)
T COG0571 9 EALEKKLGYTFKDK-----ELLEQALTHRSYANEHKAVENNERLEFLGDAVLGLVVAEYLFKKYPNLPEGELSKLRAALV 83 (235)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHhcCcchhccccCCcchHHHHhhHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 56788899998886 8999999999998654 89999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
|+..|+.+|..+||..||+ ..+|.. .. .+. -.++.+||+|||+|||+|+|+|
T Consensus 84 ~~~~La~ia~~l~l~~~l~---------lg~ge~----------~~-------gg~--~~~silaD~~EAligAiylD~g 135 (235)
T COG0571 84 SEESLAEIARELGLGDYLR---------LGKGEE----------KS-------GGR--RRESILADAFEALIGAIYLDSG 135 (235)
T ss_pred HHHHHHHHHHHhCccchhh---------ccCChh----------hc-------CCC--CchhHHHHHHHHHHHHHHHhCC
Confidence 9999999999999999999 565541 00 111 3688999999999999999999
Q ss_pred hhHHHHHHhhc
Q 000607 1116 ENVGLIFLDRI 1126 (1396)
Q Consensus 1116 ~~~a~~~~~~l 1126 (1396)
++.+.+|+..+
T Consensus 136 ~~~~~~~i~~l 146 (235)
T COG0571 136 LEAARKFILKL 146 (235)
T ss_pred hHHHHHHHHHH
Confidence 99999997543
No 88
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.92 E-value=1.6e-23 Score=255.29 Aligned_cols=121 Identities=17% Similarity=0.134 Sum_probs=106.0
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..|..++++.+.+. ...+..+||||+++..++.+++.|.+ .+++...++|. +.+|+..+.+|+.+.
T Consensus 388 ~~k~~ai~~~i~~~-~~~grpvLV~t~si~~se~ls~~L~~-----~gi~~~~Lna~--------q~~rEa~ii~~ag~~ 453 (745)
T TIGR00963 388 EEKWKAVVDEIKER-HAKGQPVLVGTTSVEKSELLSNLLKE-----RGIPHNVLNAK--------NHEREAEIIAQAGRK 453 (745)
T ss_pred HHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----cCCCeEEeeCC--------hHHHHHHHHHhcCCC
Confidence 46887887777654 25788999999999999999999997 48899999885 468899999999999
Q ss_pred eeEEEEecccccccCCCc-------ccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 449 VNVIVATSILEEGLDVQS-------CNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~-------~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.+|+|||+++++|+||+. ..+||+++.|.|.+.|.|++||+||.| |....+++.+
T Consensus 454 g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~s~ri~~q~~GRtGRqG~~G~s~~~ls~e 517 (745)
T TIGR00963 454 GAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHESRRIDNQLRGRSGRQGDPGSSRFFLSLE 517 (745)
T ss_pred ceEEEEeccccCCcCCCccchhhcCCcEEEecCCCCcHHHHHHHhccccCCCCCcceEEEEecc
Confidence 999999999999999999 559999999999999999999999998 5677777644
No 89
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.92 E-value=4.5e-23 Score=250.63 Aligned_cols=407 Identities=16% Similarity=0.110 Sum_probs=228.1
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCe
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~ 95 (1396)
...|++.|..++..++.|+ |+.|.||+|||+++++++...+ -.++.++||+||+.|+.|.++.++.+ +|++
T Consensus 101 g~~p~~VQ~~~~~~ll~G~-Iae~~TGeGKTla~~lp~~~~a-----l~G~~v~VvTptreLA~qdae~~~~l~~~lGls 174 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR-LAEMQTGEGKTLTATLPAGTAA-----LAGLPVHVITVNDYLAERDAELMRPLYEALGLT 174 (656)
T ss_pred CCCCChHHHHHHHHHhCCC-eeeeeCCCCcHHHHHHHHHHHh-----hcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCE
Confidence 3458999999999999999 9999999999999998665332 14678999999999999988888864 5899
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhcC-------------------------ccccceeEEEE
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLSY-------------------------FKLNMIKVLIL 149 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~~-------------------------~~l~~i~llI~ 149 (1396)
++.++|++.. ..+....+++|+++|..-|- |.|+... .-...+++.|+
T Consensus 175 v~~i~gg~~~------~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIv 248 (656)
T PRK12898 175 VGCVVEDQSP------DERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIV 248 (656)
T ss_pred EEEEeCCCCH------HHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEe
Confidence 9999998542 23444558999999987763 3333221 12355789999
Q ss_pred eccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccChhhhcc
Q 000607 150 DECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCASESVLSN 228 (1396)
Q Consensus 150 DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~~~~l~~ 228 (1396)
||++.+.=+ ....| |.+|+.+.. ... .+....+..+...|... -|.+.
T Consensus 249 DEvDSiLiD------------------eartp--liis~~~~~-~~~---~~~y~~~~~~~~~l~~~~~y~~d------- 297 (656)
T PRK12898 249 DEADSVLID------------------EARTP--LIISAPAKE-ADE---AEVYRQALELAAQLKEGEDYTID------- 297 (656)
T ss_pred ecccceeec------------------cCCCc--eEEECCCCC-Cch---hHHHHHHHHHHHhcCCCCceEEE-------
Confidence 999987632 12345 445553322 111 13444455555544432 22220
Q ss_pred cccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHH-HHHH------H-----
Q 000607 229 FIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINST-LLYC------L----- 296 (1396)
Q Consensus 229 ~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~------~----- 296 (1396)
.....+... .. -...++.+. ..+.. +..... .....+...+.. ..+. .
T Consensus 298 ----~~~~~v~lt-----~~----g~~~~e~~~----~~l~~--~~~~~~-~~~~~i~~Al~A~~l~~~d~dYiV~d~~V 357 (656)
T PRK12898 298 ----AAEKRIELT-----EA----GRARIAELA----ESLPP--AWRGAV-RREELVRQALSALHLFRRDEHYIVRDGKV 357 (656)
T ss_pred ----CCCCeEEEc-----HH----HHHHHHHHh----Ccchh--hcccch-HHHHHHHHHHHHHHHHhcCCceEEECCeE
Confidence 001111100 00 000010000 00000 000000 000000000000 0000 0
Q ss_pred ---H-hHH------HH--HHHHHHHHhhccccchhhhhhcccchHHHHHHHHH---------HHHHHHHHhccCCCcccc
Q 000607 297 ---S-ELG------VW--LALKAAETISCYESDFFAWEQLDGFGETIIKKFGS---------DASQALVTYVPSGAEWSI 355 (1396)
Q Consensus 297 ---~-~lg------~~--~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~---------~~~~~l~~~~~~~~~~~~ 355 (1396)
+ ..| .| +.+.+.+.-...+..........-..+.+.+.|-. .....+...+..+. ..+
T Consensus 358 ~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~kl~GmTGTa~~~~~El~~~y~l~v-v~I 436 (656)
T PRK12898 358 VIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYLRLAGMTGTAREVAGELWSVYGLPV-VRI 436 (656)
T ss_pred EEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhHHHhcccCcChHHHHHHHHHHCCCe-EEe
Confidence 0 000 01 01111111100000000000000011122222210 11222332221111 011
Q ss_pred CCCCc---ccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCc
Q 000607 356 GDDSK---FNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGI 429 (1396)
Q Consensus 356 ~~~~~---~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~ 429 (1396)
+.+.+ ... -......|...|++.+.... ..+..+||||+++..++.++..|.. .++++..+||..
T Consensus 437 Pt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~L~~~L~~-----~gi~~~~Lhg~~--- 507 (656)
T PRK12898 437 PTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH-AQGRPVLVGTRSVAASERLSALLRE-----AGLPHQVLNAKQ--- 507 (656)
T ss_pred CCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCEEEeeCCc---
Confidence 11110 011 11223578999999887742 2346799999999999999999997 489999999962
Q ss_pred CCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEE
Q 000607 430 QCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLM 499 (1396)
Q Consensus 430 ~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~l 499 (1396)
. +++..+..|+.+...|+|||+++++|+||+ ++. +||+||.|.|.+.|+||+||+||.| |.++.+
T Consensus 508 ---~--~rE~~ii~~ag~~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~s~r~y~hr~GRTGRqG~~G~s~~~ 582 (656)
T PRK12898 508 ---D--AEEAAIVARAGQRGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHDSARIDRQLAGRCGRQGDPGSYEAI 582 (656)
T ss_pred ---H--HHHHHHHHHcCCCCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCCCHHHHHHhcccccCCCCCeEEEEE
Confidence 3 556666677777778999999999999999 665 9999999999999999999999998 567777
Q ss_pred EecC
Q 000607 500 VKSG 503 (1396)
Q Consensus 500 v~~~ 503 (1396)
++.+
T Consensus 583 is~e 586 (656)
T PRK12898 583 LSLE 586 (656)
T ss_pred echh
Confidence 7644
No 90
>PRK14718 ribonuclease III; Provisional
Probab=99.92 E-value=3.3e-25 Score=249.16 Aligned_cols=133 Identities=26% Similarity=0.345 Sum_probs=116.9
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAA 1039 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~ 1039 (1396)
.+|+++|+|+|++. .+|.+||||+|+... ||||||||||+||+++++.+||..||+.+||+||.+|+.+|||.+
T Consensus 4 ~~LEkrLGY~Fkn~-----~LL~eALTH~Sys~e-~NERLEFLGDAVL~liVse~Lf~~fPdl~EGeLT~LRS~LVSnet 77 (467)
T PRK14718 4 SQLESRLRYEFRNA-----ELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS 77 (467)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHHhccCcCcc-cHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHhhhHH
Confidence 35788999999886 899999999998765 999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHH
Q 000607 1040 LCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 1119 (1396)
Q Consensus 1040 L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a 1119 (1396)
|+++|.++||..||+ ..++.. . ..+ ..+++++||+|||||||+|+|+|++.+
T Consensus 78 LA~IAr~LGL~d~Lr---------lg~gE~----------~-------sgG--~~~~sILADvFEALIGAIYLDsG~e~a 129 (467)
T PRK14718 78 LYEIAQALNISDGLR---------LGEGEL----------R-------SGG--FRRPSILADAFEAIIGAVFLDGGFEAA 129 (467)
T ss_pred HHHHHHHcCchHHHh---------hCCccc----------c-------cCC--CCChhHHHHHHHHHHHHHHHccCHHHH
Confidence 999999999999999 333320 0 011 136799999999999999999999999
Q ss_pred HHHHhhc
Q 000607 1120 LIFLDRI 1126 (1396)
Q Consensus 1120 ~~~~~~l 1126 (1396)
..|+..+
T Consensus 130 ~~fI~~l 136 (467)
T PRK14718 130 QGVIKRL 136 (467)
T ss_pred HHHHHHH
Confidence 9998655
No 91
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.92 E-value=1.9e-23 Score=251.47 Aligned_cols=338 Identities=19% Similarity=0.269 Sum_probs=219.1
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHH-hc----CCCCcEEEEEeCCcccHHHHHHHHHHhc--
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYL-LR----KPSPFVAVFLVPKVVLVPQQAEAIKMHT-- 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~-~~----~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-- 92 (1396)
....|.++++.|.+. |+||++|||||||-+|.+.|.+.... .. ..+.-++++++|+++||....+.+.+-+
T Consensus 111 fN~iQS~vFp~aY~SneNMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl~~ 190 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNENMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKLAP 190 (1230)
T ss_pred HHHHHHHhhhhhhcCCCCEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhccc
Confidence 577999999999984 89999999999999999966554432 11 1256689999999999999988887643
Q ss_pred -CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc---C-ccccceeEEEEeccccccCC-CcHH-HHH
Q 000607 93 -DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS---Y-FKLNMIKVLILDECHHARGK-HQYA-CIM 165 (1396)
Q Consensus 93 -~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~---~-~~l~~i~llI~DEaH~~~~~-~~~~-~im 165 (1396)
|+.|..++|++... ..+...++|+|+||+.+. .+.+. . .-++.+.|+|+||+|.+.++ .|-- .|.
T Consensus 191 ~gi~v~ELTGD~ql~-------~tei~~tqiiVTTPEKwD-vvTRk~~~d~~l~~~V~LviIDEVHlLhd~RGpvlEtiV 262 (1230)
T KOG0952|consen 191 LGISVRELTGDTQLT-------KTEIADTQIIVTTPEKWD-VVTRKSVGDSALFSLVRLVIIDEVHLLHDDRGPVLETIV 262 (1230)
T ss_pred ccceEEEecCcchhh-------HHHHHhcCEEEeccccee-eeeeeeccchhhhhheeeEEeeeehhhcCcccchHHHHH
Confidence 79999999997543 444678999999999874 33322 1 22477999999999999864 3322 232
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEI 245 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~ 245 (1396)
.+.. +... .....-||+|||||..+ +..+..+|+.. |......|+..=.
T Consensus 263 aRtl-r~ve-ssqs~IRivgLSATlPN-------------~eDvA~fL~vn----------------~~~glfsFd~~yR 311 (1230)
T KOG0952|consen 263 ARTL-RLVE-SSQSMIRIVGLSATLPN-------------YEDVARFLRVN----------------PYAGLFSFDQRYR 311 (1230)
T ss_pred HHHH-HHHH-hhhhheEEEEeeccCCC-------------HHHHHHHhcCC----------------Cccceeeeccccc
Confidence 2222 1111 23456799999999876 34445555432 1112222222111
Q ss_pred chhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcc
Q 000607 246 PHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLD 325 (1396)
Q Consensus 246 ~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~ 325 (1396)
|.++...+ +|.-+
T Consensus 312 PvpL~~~~---------------------------------------------iG~k~---------------------- 324 (1230)
T KOG0952|consen 312 PVPLTQGF---------------------------------------------IGIKG---------------------- 324 (1230)
T ss_pred ccceeeeE---------------------------------------------Eeeec----------------------
Confidence 11110000 00000
Q ss_pred cchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 326 GFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 326 ~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.+. .. ..+.+. .-+..+..+.+ ..+.+++|||.+|..+...++
T Consensus 325 ~~~-~~-------~~~~~d------------------------~~~~~kv~e~~-----~~g~qVlvFvhsR~~Ti~tA~ 367 (1230)
T KOG0952|consen 325 KKN-RQ-------QKKNID------------------------EVCYDKVVEFL-----QEGHQVLVFVHSRNETIRTAK 367 (1230)
T ss_pred ccc-hh-------hhhhHH------------------------HHHHHHHHHHH-----HcCCeEEEEEecChHHHHHHH
Confidence 000 00 000000 11222233333 257899999999998888888
Q ss_pred HHHhhcCCCCCceeeEEecC-------------CCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE
Q 000607 406 LLSELLPRHCTWKTKYIAGN-------------NSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~-------------~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
.|.+.... .|....++++. +-.++||...+|+-+.+-|..|.++||+||+.++-|+|+|+-.++|.
T Consensus 368 ~l~~~a~~-~g~~~~f~~~~~~k~l~elf~~g~~iHhAGm~r~DR~l~E~~F~~G~i~vL~cTaTLAwGVNLPA~aViIK 446 (1230)
T KOG0952|consen 368 KLRERAET-NGEKDLFLPSPRNKQLKELFQQGMGIHHAGMLRSDRQLVEKEFKEGHIKVLCCTATLAWGVNLPAYAVIIK 446 (1230)
T ss_pred HHHHHHHh-cCcccccCCChhhHHHHHHHHhhhhhcccccchhhHHHHHHHHhcCCceEEEecceeeeccCCcceEEEec
Confidence 88765211 34444455443 12347899999999999999999999999999999999999777773
Q ss_pred ----eCCCC------cHHHHHHhhhcccCCC----CcEEEEEecC
Q 000607 473 ----FDPSR------TVCSFIQSRGRARMQN----SDYLLMVKSG 503 (1396)
Q Consensus 473 ----fD~p~------s~~~yiQr~GRA~R~g----s~~i~lv~~~ 503 (1396)
||.-. ..-+-+|..|||||.+ |..++|.+.+
T Consensus 447 GT~~ydsskg~f~dlgilDVlQifGRAGRPqFd~~G~giIiTt~d 491 (1230)
T KOG0952|consen 447 GTQVYDSSKGSFVDLGILDVLQIFGRAGRPQFDSSGEGIIITTRD 491 (1230)
T ss_pred CCcccccccCceeeehHHHHHHHHhccCCCCCCCCceEEEEeccc
Confidence 55543 3456789999999987 3455555433
No 92
>PRK14701 reverse gyrase; Provisional
Probab=99.92 E-value=3.9e-24 Score=285.41 Aligned_cols=130 Identities=16% Similarity=0.142 Sum_probs=98.1
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-----C
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-----D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-----~ 93 (1396)
..|+++|.++++.++++ ++++.+|||+|||+.++.+...+. .++++++||+||++|+.|+.+.++.+. +
T Consensus 78 ~~pt~iQ~~~i~~il~G~d~li~APTGsGKTl~~~~~al~~~-----~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~ 152 (1638)
T PRK14701 78 FEFWSIQKTWAKRILRGKSFSIVAPTGMGKSTFGAFIALFLA-----LKGKKCYIILPTTLLVKQTVEKIESFCEKANLD 152 (1638)
T ss_pred CCCCHHHHHHHHHHHcCCCEEEEEcCCCCHHHHHHHHHHHHH-----hcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCc
Confidence 35999999999999998 899999999999995544322221 246789999999999999999999854 4
Q ss_pred CeEEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.++..++|+..... ....|..... .++|+|+||+.|.+.+... . ..+++++|+||||++.+
T Consensus 153 v~v~~~~g~~s~~e-~~~~~~~l~~g~~dILV~TPgrL~~~~~~l-~-~~~i~~iVVDEAD~ml~ 214 (1638)
T PRK14701 153 VRLVYYHSNLRKKE-KEEFLERIENGDFDILVTTAQFLARNFPEM-K-HLKFDFIFVDDVDAFLK 214 (1638)
T ss_pred eeEEEEeCCCCHHH-HHHHHHHHhcCCCCEEEECCchhHHhHHHH-h-hCCCCEEEEECceeccc
Confidence 56677888754331 1122443333 4899999999998766532 2 26799999999999975
No 93
>PRK12372 ribonuclease III; Reviewed
Probab=99.92 E-value=5.5e-25 Score=247.17 Aligned_cols=133 Identities=26% Similarity=0.342 Sum_probs=116.7
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHH
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQEDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAA 1039 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~ 1039 (1396)
.+|+++|+|.|++. .||.+||||+|+... ||||||||||+||+++++.+||..||+.+||+||.+|+.+|||.+
T Consensus 4 ~~LEk~LGY~Fkn~-----~LL~eALTH~Sy~~~-~NERLEFLGDAVL~liVse~Lf~~fP~~~EG~LT~lRS~LVsn~t 77 (413)
T PRK12372 4 SQLESRLRYEFRNA-----ELLRQALTHRSHSAT-HNERLEFLGDSVLNCAVAALLFQRFGKLDEGDLSRVRANLVKQQS 77 (413)
T ss_pred HHHHHHhCCCcCCH-----HHHHHHHhccccccc-cHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhhhHH
Confidence 35788999999886 899999999998665 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHH
Q 000607 1040 LCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVG 1119 (1396)
Q Consensus 1040 L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a 1119 (1396)
|+.+|.++||.+||+ ...+.. . ..+ ..+++++||+|||||||+|+|+|++.+
T Consensus 78 LA~IA~~LgL~~~Lr---------lg~ge~----------~-------sgg--~~~~kILADvfEALIGAIYLDsG~e~a 129 (413)
T PRK12372 78 LYEIAQALNISEGLR---------LGEGEL----------R-------SGG--FRRPSILADAFEAIIGAVFLDGGFEAA 129 (413)
T ss_pred HHHHHHHcCchHhhh---------cCcchh----------h-------cCC--CCCccHHHHHHHHHHHHHHHhCCHHHH
Confidence 999999999999998 333320 0 011 136799999999999999999999999
Q ss_pred HHHHhhc
Q 000607 1120 LIFLDRI 1126 (1396)
Q Consensus 1120 ~~~~~~l 1126 (1396)
..|+..+
T Consensus 130 ~~fV~~l 136 (413)
T PRK12372 130 QGVIKRL 136 (413)
T ss_pred HHHHHHH
Confidence 9998765
No 94
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=99.91 E-value=3.9e-24 Score=261.04 Aligned_cols=404 Identities=20% Similarity=0.247 Sum_probs=250.3
Q ss_pred ccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 20 PFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
-.+|+||.+.++..+. +|+|++..+|.|||...+..+..+.+..+-.+ ..|++||... +..|.+++...++.
T Consensus 369 ~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~g--pflvvvplst-~~~W~~ef~~w~~m 445 (1373)
T KOG0384|consen 369 NELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHG--PFLVVVPLST-ITAWEREFETWTDM 445 (1373)
T ss_pred chhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccC--CeEEEeehhh-hHHHHHHHHHHhhh
Confidence 3589999999887764 48999999999999999999888876544332 3789999844 47799999999999
Q ss_pred eEEEEeCCCCcccCCcc-chHHhh----ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--cHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGA-TWKEEM----SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--QYACIMTE 167 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~-~~~~~~----~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--~~~~im~~ 167 (1396)
++..|+|+.....--.+ .|...- -..+++++|+++++..- .++.--.|.++++||||++++.. .|.. +..
T Consensus 446 n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkDk--~~L~~i~w~~~~vDeahrLkN~~~~l~~~-l~~ 522 (1373)
T KOG0384|consen 446 NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKDK--AELSKIPWRYLLVDEAHRLKNDESKLYES-LNQ 522 (1373)
T ss_pred ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhccH--hhhccCCcceeeecHHhhcCchHHHHHHH-HHH
Confidence 99999998432100000 011111 14789999999997543 35555679999999999999652 2222 333
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhh-------------------c
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVL-------------------S 227 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l-------------------~ 227 (1396)
|. ..+.|++|+||..++ |.+|-++++-..-. ....+++ .
T Consensus 523 f~----------~~~rllitgTPlQNs-----------ikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~ 581 (1373)
T KOG0384|consen 523 FK----------MNHRLLITGTPLQNS-----------LKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILK 581 (1373)
T ss_pred hc----------ccceeeecCCCcccc-----------HHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhh
Confidence 32 346799999999865 44444444211000 0000110 1
Q ss_pred ccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHH
Q 000607 228 NFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKA 307 (1396)
Q Consensus 228 ~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~ 307 (1396)
.++-+.....+. ..+|......+.-.|..++++|.+.+-..++.. ..+..+.-...++.+..+|-..|-+.
T Consensus 582 P~~lRr~kkdve---kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~-----LtKG~~g~~~~lLNimmELkKccNHp- 652 (1373)
T KOG0384|consen 582 PFLLRRLKKDVE---KSLPPKEETILRVELSDLQKQYYKAILTKNFSA-----LTKGAKGSTPSLLNIMMELKKCCNHP- 652 (1373)
T ss_pred HHHHHHHHhhhc---cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHH-----HhccCCCCCchHHHHHHHHHHhcCCc-
Confidence 111110000000 012222222234445555555544433211110 00111111122233333443333211
Q ss_pred HHHhhccccchhhhhhcccchHHHHHHHHH-HHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCC
Q 000607 308 AETISCYESDFFAWEQLDGFGETIIKKFGS-DASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVE 386 (1396)
Q Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~ 386 (1396)
++ +...++.+...+.. .....++.... .|.|+-.|-.+|-..+ ..
T Consensus 653 -----------yL---i~gaee~~~~~~~~~~~d~~L~~lI~-------------------sSGKlVLLDKLL~rLk-~~ 698 (1373)
T KOG0384|consen 653 -----------YL---IKGAEEKILGDFRDKMRDEALQALIQ-------------------SSGKLVLLDKLLPRLK-EG 698 (1373)
T ss_pred -----------cc---cCcHHHHHHHhhhhcchHHHHHHHHH-------------------hcCcEEeHHHHHHHHh-cC
Confidence 11 11112222222211 00011111110 1556655556665553 57
Q ss_pred CeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc---CCeeEEEEecccccccC
Q 000607 387 DIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR---GLVNVIVATSILEEGLD 463 (1396)
Q Consensus 387 ~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~---g~~nvLVaTsvleeGiD 463 (1396)
+.|+|||.+-+.+.+.|+++|.. .+++...+.|+. ...-|+..|+.|.. ...-.|+||.+++-|||
T Consensus 699 GHrVLIFSQMVRmLDIL~eYL~~-----r~ypfQRLDGsv------rgelRq~AIDhFnap~SddFvFLLSTRAGGLGIN 767 (1373)
T KOG0384|consen 699 GHRVLIFSQMVRMLDILAEYLSL-----RGYPFQRLDGSV------RGELRQQAIDHFNAPDSDDFVFLLSTRAGGLGIN 767 (1373)
T ss_pred CceEEEhHHHHHHHHHHHHHHHH-----cCCcceeccCCc------chHHHHHHHHhccCCCCCceEEEEecccCccccc
Confidence 89999999999999999999985 589999999985 77899999999986 45789999999999999
Q ss_pred CCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 464 VQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 464 Ip~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
+..++.||.||..|||..-+|+..||+|.|+ .+|-||+.+.
T Consensus 768 LatADTVIIFDSDWNPQNDLQAqARaHRIGQkk~VnVYRLVTk~T 812 (1373)
T KOG0384|consen 768 LATADTVIIFDSDWNPQNDLQAQARAHRIGQKKHVNVYRLVTKNT 812 (1373)
T ss_pred ccccceEEEeCCCCCcchHHHHHHHHHhhcccceEEEEEEecCCc
Confidence 9999999999999999999999999999996 4677777653
No 95
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.91 E-value=4.7e-23 Score=251.05 Aligned_cols=134 Identities=20% Similarity=0.262 Sum_probs=97.7
Q ss_pred EEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhhc
Q 000607 39 IVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMS 118 (1396)
Q Consensus 39 Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~ 118 (1396)
++.++||||||.+++.++.+... .+++++||+|+++|+.|+++.+++.++.++..++|+.+... ....|.....
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~-----~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~e-r~~~~~~~~~ 74 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLA-----LGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSE-KLQAWRKVKN 74 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHH-HHHHHHHHHc
Confidence 47899999999999877765543 46789999999999999999999988889999999864431 2244665554
Q ss_pred -cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC---Cc-HH-HHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 119 -KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK---HQ-YA-CIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 119 -~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~---~~-~~-~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
..+|||+|+..+ +..+.++++||+||+|+..-. .| |. +-+..+... .....++++||||.
T Consensus 75 g~~~IVVGTrsal-------f~p~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~------~~~~~vil~SATPs 140 (505)
T TIGR00595 75 GEILVVIGTRSAL-------FLPFKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAK------KFNCPVVLGSATPS 140 (505)
T ss_pred CCCCEEECChHHH-------cCcccCCCEEEEECCCccccccccCCCCcHHHHHHHHHH------hcCCCEEEEeCCCC
Confidence 579999999866 345789999999999998722 22 21 112222211 12356888999994
No 96
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.91 E-value=2.6e-25 Score=220.59 Aligned_cols=126 Identities=40% Similarity=0.560 Sum_probs=101.8
Q ss_pred CHHHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHH
Q 000607 1164 DPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHI 1243 (1396)
Q Consensus 1164 ~~~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i 1243 (1396)
|+.|+.+||||+||. ++...+|||||||||+||+++|++|+|+++| .++|.|+.+|+.+|++++|+.+|.++||+++|
T Consensus 1 ~~~Ll~~alTH~S~~-~~~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i 78 (128)
T PF14622_consen 1 DDELLLQALTHKSYA-HERKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLI 78 (128)
T ss_dssp SHHHHHHHTB-HHHH-HHTCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-
T ss_pred CHHHHHHHhcCcccc-ccccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHH
Confidence 688999999999996 4446899999999999999999999999954 48999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhcccc
Q 000607 1244 LHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEP 1314 (1396)
Q Consensus 1244 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~ 1314 (1396)
+...+..... ....+|+++|+|||+|||||+|+|+ +.+.+|+.+.+-|
T Consensus 79 ~~~~~~~~~~---------------------~~~~~~vlad~feAliGAiyld~G~--~~a~~~i~~~i~~ 126 (128)
T PF14622_consen 79 RWGPGEEKSG---------------------GSGSDKVLADVFEALIGAIYLDSGF--EAARKFIQKLILP 126 (128)
T ss_dssp B--HHHHHTT---------------------GGG-HHHHHHHHHHHHHHHHHHH-H--HHHHHHHHHHH--
T ss_pred HhCccHhhcC---------------------CCCCccHHHhHHHHHHHHHHHHcCH--HHHHHHHHHHhcc
Confidence 9954332110 1346799999999999999999998 5888998876654
No 97
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.90 E-value=6.8e-23 Score=244.27 Aligned_cols=346 Identities=20% Similarity=0.236 Sum_probs=222.7
Q ss_pred cCCCcccchHHHHHHHHHHhc----C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 15 SADTLPFARNYQLEALENALK----Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~----~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+....+.+|.||..++.++.+ + .++++|.||+|||.+|+.+|..+ ++.+..||+||||.+++|+.|-+..+
T Consensus 159 ~~~s~i~~RyyQ~~AI~rv~Eaf~~g~~raLlvMATGTGKTrTAiaii~rL---~r~~~~KRVLFLaDR~~Lv~QA~~af 235 (875)
T COG4096 159 DIDSAIGPRYYQIIAIRRVIEAFSKGQNRALLVMATGTGKTRTAIAIIDRL---IKSGWVKRVLFLADRNALVDQAYGAF 235 (875)
T ss_pred cccccccchHHHHHHHHHHHHHHhcCCceEEEEEecCCCcceeHHHHHHHH---HhcchhheeeEEechHHHHHHHHHHH
Confidence 334566799999999987765 3 49999999999999999888665 55678899999999999999999999
Q ss_pred HHhcCC--eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc-----CccccceeEEEEeccccccCCCcH
Q 000607 89 KMHTDL--KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS-----YFKLNMIKVLILDECHHARGKHQY 161 (1396)
Q Consensus 89 ~~~~~~--~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~-----~~~l~~i~llI~DEaH~~~~~~~~ 161 (1396)
..+.+. .+..+.+. ..+ ..++|.|+|+|.+...+.+. .+....++|||+||||+-.-+ -|
T Consensus 236 ~~~~P~~~~~n~i~~~-~~~-----------~s~~i~lsTyqt~~~~~~~~~~~~~~f~~g~FDlIvIDEaHRgi~~-~~ 302 (875)
T COG4096 236 EDFLPFGTKMNKIEDK-KGD-----------TSSEIYLSTYQTMTGRIEQKEDEYRRFGPGFFDLIVIDEAHRGIYS-EW 302 (875)
T ss_pred HHhCCCccceeeeecc-cCC-----------cceeEEEeehHHHHhhhhccccccccCCCCceeEEEechhhhhHHh-hh
Confidence 998753 34444443 222 15899999999999877654 345567999999999998743 56
Q ss_pred HHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCccee---
Q 000607 162 ACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKF--- 237 (1396)
Q Consensus 162 ~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~--- 237 (1396)
..|+..|-. .++||||||-...+.+. -..+ +..++..+.++.+.....-|...+
T Consensus 303 ~~I~dYFdA-----------~~~gLTATP~~~~d~~T-----------~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~ 360 (875)
T COG4096 303 SSILDYFDA-----------ATQGLTATPKETIDRST-----------YGFFNGEPTYAYSLEEAVEDGFLVPYKVIRID 360 (875)
T ss_pred HHHHHHHHH-----------HHHhhccCccccccccc-----------ccccCCCcceeecHHHHhhccccCCCCceEEe
Confidence 677776653 24678999976433221 1223 566677766777665444332111
Q ss_pred EeccCCCCc-hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc
Q 000607 238 KFYKYDEIP-HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYES 316 (1396)
Q Consensus 238 ~~y~~~~~~-~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~ 316 (1396)
..++..... ....+ . .+... +.+.. +.
T Consensus 361 ~~~~~~G~~~~~~se----r----ek~~g-------------------------------------------~~i~~-dd 388 (875)
T COG4096 361 TDFDLDGWKPDAGSE----R----EKLQG-------------------------------------------EAIDE-DD 388 (875)
T ss_pred eeccccCcCcCccch----h----hhhhc-------------------------------------------cccCc-cc
Confidence 111111100 00000 0 00000 00000 00
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccH-HHHHHHHHHhhh-cCCCCeeEEEEe
Q 000607 317 DFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTE-KIVCLIESLLEY-RGVEDIRCIIFV 394 (1396)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~-Kv~~L~~~L~~~-~~~~~~k~IIFv 394 (1396)
. .+. .......+....-+. -...+-+.|+.- ....-.|+||||
T Consensus 389 ~--~~~---------------------------------~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa 433 (875)
T COG4096 389 Q--NFE---------------------------------ARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFA 433 (875)
T ss_pred c--ccc---------------------------------ccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEe
Confidence 0 000 000000000000011 122233333331 112257999999
Q ss_pred chHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC--eeEEEEecccccccCCCcccEEEE
Q 000607 395 ERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL--VNVIVATSILEEGLDVQSCNLVIM 472 (1396)
Q Consensus 395 ~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~--~nvLVaTsvleeGiDIp~~~lVI~ 472 (1396)
.+..+|+.+...|....|.+++--+..++|+. .+-+..+++|...+ -+|.|+.+++..|||+|.|.++|.
T Consensus 434 ~n~dHAe~i~~~~~~~ype~~~~~a~~IT~d~--------~~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF 505 (875)
T COG4096 434 KNHDHAERIREALVNEYPEYNGRYAMKITGDA--------EQAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVF 505 (875)
T ss_pred eCcHHHHHHHHHHHHhCccccCceEEEEeccc--------hhhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeee
Confidence 99999999999999887775555567788864 23345566665533 478888899999999999999999
Q ss_pred eCCCCcHHHHHHhhhcccCCC
Q 000607 473 FDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 473 fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+-...|...|.|++||+-|.-
T Consensus 506 ~r~VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 506 DRKVRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred hhhhhhHHHHHHHhcCccccC
Confidence 999999999999999998853
No 98
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=99.90 E-value=2.4e-24 Score=197.18 Aligned_cols=84 Identities=43% Similarity=0.681 Sum_probs=62.2
Q ss_pred hHHHHHHhhccCCCCCCCCCccEEEE--eCCeEEEEEEcCCCCCCccc--cccCCHHHHHHHHHHHHHHHHHHcCCCCCC
Q 000607 560 SVSLIYFYCSRLPSDGYFKPTPKFHI--NKEMGICTLYLPNNCPIQTV--IAQGNIKTLKQAACLEACKKLHQIGALTDN 635 (1396)
Q Consensus 560 ai~~l~~yc~~lp~d~~~~~~p~~~i--~~~~~~~~v~LP~~~p~~~~--~~~~~~~~Ak~~aAf~a~~~L~~~g~ldd~ 635 (1396)
|+++|||||++||+|.|+.++|.|.+ .+++|+|+|+||.++|++.+ ++|++|+.|||+|||+||++||++|+||||
T Consensus 1 Ai~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~~~~c~v~LP~~~pi~~i~g~~~~sk~~AK~sAAf~Ac~~L~~~g~ldd~ 80 (90)
T PF03368_consen 1 AISLLNRYCSTLPSDSFTNLKPEFEIEKIGSGFICTVILPINSPIRSIEGPPMRSKKLAKRSAAFEACKKLHEAGELDDH 80 (90)
T ss_dssp HHHHHHHHHTTSSS-TT--SS-EEEEEE--G-EEEEEE--TT-SS--EEEE--SSHHHHHHHHHHHHHHHHHHH-S-TTT
T ss_pred CHHHHHHHHhcCCCCCCccCCceEEEEEcCCcEEEEEECCCCCCCCeEEccccccHHHHHHHHHHHHHHHHHHcCCCccc
Confidence 78999999999999999999999998 55689999999999999998 899999999999999999999999999999
Q ss_pred CCcccccc
Q 000607 636 LLPDIVVE 643 (1396)
Q Consensus 636 L~P~~~~~ 643 (1396)
|+|...++
T Consensus 81 L~P~~~~~ 88 (90)
T PF03368_consen 81 LLPISKER 88 (90)
T ss_dssp S--HHHH-
T ss_pred cCCCCCCc
Confidence 99987543
No 99
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=99.90 E-value=2.2e-22 Score=235.83 Aligned_cols=427 Identities=19% Similarity=0.222 Sum_probs=245.6
Q ss_pred CcccchHHHHHHHHHHh----cC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 18 TLPFARNYQLEALENAL----KQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l----~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
+.+++.+||.-.+.+.. ++ |+|+++++|.|||.+++..+..+.+. +....=||+||...| +.|.++|.+++
T Consensus 396 s~i~LkdYQlvGvNWL~Llyk~~l~gILADEMGLGKTiQvIaFlayLkq~---g~~gpHLVVvPsSTl-eNWlrEf~kwC 471 (941)
T KOG0389|consen 396 SGIQLKDYQLVGVNWLLLLYKKKLNGILADEMGLGKTIQVIAFLAYLKQI---GNPGPHLVVVPSSTL-ENWLREFAKWC 471 (941)
T ss_pred CCCcccchhhhhHHHHHHHHHccccceehhhccCcchhHHHHHHHHHHHc---CCCCCcEEEecchhH-HHHHHHHHHhC
Confidence 35669999999998765 23 89999999999999998877655442 223336999999766 89999999998
Q ss_pred C-CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHh-HhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH
Q 000607 93 D-LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDG-LRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH 170 (1396)
Q Consensus 93 ~-~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~-l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~ 170 (1396)
+ ++|..|+|...-..--.......-..++|+|+||+....- -.+.+++-.+++++|+||+|.+++..+++ |.
T Consensus 472 Psl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~kdDRsflk~~~~n~viyDEgHmLKN~~SeR------y~ 545 (941)
T KOG0389|consen 472 PSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASSKDDRSFLKNQKFNYVIYDEGHMLKNRTSER------YK 545 (941)
T ss_pred CceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCChHHHHHHHhccccEEEecchhhhhccchHH------HH
Confidence 5 8999999973111000001111122789999999987632 23557777889999999999999764322 21
Q ss_pred hhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEecc--C--------------------------
Q 000607 171 RLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCA--S-------------------------- 222 (1396)
Q Consensus 171 ~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~--~-------------------------- 222 (1396)
..+ .-+....|+||+||..++-. +-+.-|+=.| .+++... +
T Consensus 546 ~LM---~I~An~RlLLTGTPLQNNL~-------ELiSLL~Fvl-P~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qerIs 614 (941)
T KOG0389|consen 546 HLM---SINANFRLLLTGTPLQNNLK-------ELISLLAFVL-PKVFDSSMEDLDVIFKAKKTSDGDIENALLSQERIS 614 (941)
T ss_pred Hhc---cccccceEEeeCCcccccHH-------HHHHHHHHHh-hHhhhccchHHHHHHhccCCccchhhHHHHHHHHHH
Confidence 111 12245689999999987521 1121111111 1111100 0
Q ss_pred --------------hhhhcccccCCcceeEeccCCC-CchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHH--HHHHH
Q 000607 223 --------------ESVLSNFIPFSTAKFKFYKYDE-IPHALYTHLADELAMIELKHTRSLENLDLNEAQAEL--IRKKV 285 (1396)
Q Consensus 223 --------------~~~l~~~~~~~~~~~~~y~~~~-~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~--~~~~~ 285 (1396)
.+++.+..|. +...+.|-... ....++..+.+. +...+...... +.... ..-++
T Consensus 615 rAK~im~PFILRR~K~qVL~~LPp-K~~~Ie~c~mse~Q~~~Y~~~~~~-------~~~~~~~~~~n-s~~~~~~vlmql 685 (941)
T KOG0389|consen 615 RAKTIMKPFILRRLKSQVLKQLPP-KIQRIEYCEMSEKQKQLYDELIEL-------YDVKLNEVSKN-SELKSGNVLMQL 685 (941)
T ss_pred HHHHhhhHHHHHHHHHHHHHhcCC-ccceeEeeecchHHHHHHHHHHHH-------Hhhhccccccc-cccccchHHHHH
Confidence 0011111111 11122222111 111111111111 10000000000 00000 01111
Q ss_pred HHH-----HHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH--HHHH--HHHHHHHHhccCCCccccC
Q 000607 286 SKI-----NSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK--KFGS--DASQALVTYVPSGAEWSIG 356 (1396)
Q Consensus 286 ~~~-----~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~l~--~~~~~l~~~~~~~~~~~~~ 356 (1396)
++. +-+..+.-..+.. .++.+..... ++ +.+.+-+.. .++. ++.+...++. ....+.+.
T Consensus 686 RK~AnHPLL~R~~Y~de~L~~-----mak~il~e~a----y~--~~n~qyIfEDm~~msDfelHqLc~~f~-~~~~f~L~ 753 (941)
T KOG0389|consen 686 RKAANHPLLFRSIYTDEKLRK-----MAKRILNEPA----YK--KANEQYIFEDMEVMSDFELHQLCCQFR-HLSKFQLK 753 (941)
T ss_pred HHHhcChhHHHHhccHHHHHH-----HHHHHhCchh----hh--hcCHHHHHHHHHhhhHHHHHHHHHhcC-CCcccccC
Confidence 111 1111111111111 0111100000 00 001110110 1111 1222222221 11111111
Q ss_pred CCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 357 DDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 357 ~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
. .. -..|.|+..|-.+|.... .++.|++||.+.-.+.+.|..+|..+ +++...+.|.+ .-..
T Consensus 754 d--~~----~mdSgK~r~L~~LLp~~k-~~G~RVLiFSQFTqmLDILE~~L~~l-----~~~ylRLDGsT------qV~~ 815 (941)
T KOG0389|consen 754 D--DL----WMDSGKCRKLKELLPKIK-KKGDRVLIFSQFTQMLDILEVVLDTL-----GYKYLRLDGST------QVND 815 (941)
T ss_pred C--ch----hhhhhhHhHHHHHHHHHh-hcCCEEEEeeHHHHHHHHHHHHHHhc-----CceEEeecCCc------cchH
Confidence 0 01 123899999999998864 46799999999999999999999975 78889999986 7789
Q ss_pred HHHHHHHHhcCC--eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCC
Q 000607 437 QNEIVEEFRRGL--VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGD 504 (1396)
Q Consensus 437 r~~~l~~Fr~g~--~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~ 504 (1396)
|+..++.|...+ .-+|++|.+++-|||+..+|.||.||...||-.-.|+-.||+|.|+ .++-+++.+.
T Consensus 816 RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~VIihD~dFNP~dD~QAEDRcHRvGQtkpVtV~rLItk~T 889 (941)
T KOG0389|consen 816 RQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTVIIHDIDFNPYDDKQAEDRCHRVGQTKPVTVYRLITKST 889 (941)
T ss_pred HHHHHHhhccCCceEEEEEeeccCcceecccccceEEEeecCCCCcccchhHHHHHhhCCcceeEEEEEEecCc
Confidence 999999998765 4578899999999999999999999999999999999999999996 5677777664
No 100
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.90 E-value=2.5e-22 Score=258.24 Aligned_cols=108 Identities=17% Similarity=0.114 Sum_probs=90.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
....+|||++++..+..+++.|+.. .+....+..+||. |++.+|..+++. .|..+|||||+++|+|||||
T Consensus 285 ~~GdILVFLpg~~EIe~lae~L~~~--~~~~~~VlpLhg~------Ls~~eQ~~Vf~~--~g~rkIIVATNIAEtSITIp 354 (1294)
T PRK11131 285 GPGDILIFMSGEREIRDTADALNKL--NLRHTEILPLYAR------LSNSEQNRVFQS--HSGRRIVLATNVAETSLTVP 354 (1294)
T ss_pred CCCCEEEEcCCHHHHHHHHHHHHhc--CCCcceEeecccC------CCHHHHHHHhcc--cCCeeEEEeccHHhhccccC
Confidence 4568999999999999999999864 1123456778887 699999999886 58899999999999999999
Q ss_pred cccEEEEeC---------------CC---CcHHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 466 SCNLVIMFD---------------PS---RTVCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~fD---------------~p---~s~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
++++||+++ +| -|..+|+||.|||||.+ |.++.++++.
T Consensus 355 gI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~~G~c~rLyte~ 411 (1294)
T PRK11131 355 GIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVSEGICIRLYSED 411 (1294)
T ss_pred cceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCCCcEEEEeCCHH
Confidence 999999986 33 35578999999999976 6888888754
No 101
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.90 E-value=4.1e-22 Score=248.14 Aligned_cols=316 Identities=21% Similarity=0.262 Sum_probs=216.8
Q ss_pred CccccccCCCcccchHHHHHHHHHHhc----C---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 9 DTTEEVSADTLPFARNYQLEALENALK----Q---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 9 ~~~~~~~~~~~~~~r~yQ~e~~~~~l~----~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
+..+.+.....+...+=|..+++.+++ + |-+||+|.|-|||-+|+-++-... .++|.|.|||||.-|+
T Consensus 582 ~~q~~F~~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV-----~~GKQVAvLVPTTlLA 656 (1139)
T COG1197 582 EWQEEFEASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAV-----MDGKQVAVLVPTTLLA 656 (1139)
T ss_pred HHHHHHHhcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHh-----cCCCeEEEEcccHHhH
Confidence 334445555566789999999999987 1 799999999999999976443221 2679999999999999
Q ss_pred HHHHHHHHHhc---CCeEEEEeCCCCcccCCccchHHhh--ccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 82 PQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATWKEEM--SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 82 ~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
+|.++.|+.-+ +++|..++-=.+.. .+..-.+.+ ...||||+|...|- +.+.+.++.|||+||=||+.
T Consensus 657 ~QHy~tFkeRF~~fPV~I~~LSRF~s~k--E~~~il~~la~G~vDIvIGTHrLL~-----kdv~FkdLGLlIIDEEqRFG 729 (1139)
T COG1197 657 QQHYETFKERFAGFPVRIEVLSRFRSAK--EQKEILKGLAEGKVDIVIGTHRLLS-----KDVKFKDLGLLIIDEEQRFG 729 (1139)
T ss_pred HHHHHHHHHHhcCCCeeEEEecccCCHH--HHHHHHHHHhcCCccEEEechHhhC-----CCcEEecCCeEEEechhhcC
Confidence 99999998643 56666665432211 111111111 26899999998663 45668999999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcce
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAK 236 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~ 236 (1396)
-.| ++..+.. ...-.+|-|||||+... |.-.| ..+++.+ .+.+|...
T Consensus 730 Vk~------KEkLK~L-----r~~VDvLTLSATPIPRT--------------L~Msm----~GiRdlS----vI~TPP~~ 776 (1139)
T COG1197 730 VKH------KEKLKEL-----RANVDVLTLSATPIPRT--------------LNMSL----SGIRDLS----VIATPPED 776 (1139)
T ss_pred ccH------HHHHHHH-----hccCcEEEeeCCCCcch--------------HHHHH----hcchhhh----hccCCCCC
Confidence 766 4444322 23357999999998753 11111 0111110 11111111
Q ss_pred eEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhcccc
Q 000607 237 FKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYES 316 (1396)
Q Consensus 237 ~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~ 316 (1396)
.. |..++
T Consensus 777 R~-------pV~T~------------------------------------------------------------------ 783 (1139)
T COG1197 777 RL-------PVKTF------------------------------------------------------------------ 783 (1139)
T ss_pred Cc-------ceEEE------------------------------------------------------------------
Confidence 00 00000
Q ss_pred chhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHH-HHhhhcCCCCeeEEEEec
Q 000607 317 DFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIE-SLLEYRGVEDIRCIIFVE 395 (1396)
Q Consensus 317 ~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~-~L~~~~~~~~~k~IIFv~ 395 (1396)
+... ++.+ +.+ ++++. ..+.++..-.|
T Consensus 784 -------V~~~-----------------------------------------d~~~--ireAI~REl--~RgGQvfYv~N 811 (1139)
T COG1197 784 -------VSEY-----------------------------------------DDLL--IREAILREL--LRGGQVFYVHN 811 (1139)
T ss_pred -------EecC-----------------------------------------ChHH--HHHHHHHHH--hcCCEEEEEec
Confidence 0000 0000 001 11111 24678888889
Q ss_pred hHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCC
Q 000607 396 RVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDP 475 (1396)
Q Consensus 396 ~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~ 475 (1396)
++++...+...|+++.|. .++.+.||. |+.++-++++.+|-+|+.+|||||.+.|.|||||++|.+|.-+.
T Consensus 812 rV~~Ie~~~~~L~~LVPE---arI~vaHGQ------M~e~eLE~vM~~F~~g~~dVLv~TTIIEtGIDIPnANTiIIe~A 882 (1139)
T COG1197 812 RVESIEKKAERLRELVPE---ARIAVAHGQ------MRERELEEVMLDFYNGEYDVLVCTTIIETGIDIPNANTIIIERA 882 (1139)
T ss_pred chhhHHHHHHHHHHhCCc---eEEEEeecC------CCHHHHHHHHHHHHcCCCCEEEEeeeeecCcCCCCCceEEEecc
Confidence 999999999999998665 789999998 89999999999999999999999999999999999999997666
Q ss_pred CC-cHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 476 SR-TVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 476 p~-s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
.. -+.+..|-|||+||.+ +.+++++...
T Consensus 883 D~fGLsQLyQLRGRVGRS~~~AYAYfl~p~~ 913 (1139)
T COG1197 883 DKFGLAQLYQLRGRVGRSNKQAYAYFLYPPQ 913 (1139)
T ss_pred ccccHHHHHHhccccCCccceEEEEEeecCc
Confidence 54 4789999999999987 4566666643
No 102
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.89 E-value=2.4e-22 Score=264.04 Aligned_cols=131 Identities=16% Similarity=0.162 Sum_probs=97.2
Q ss_pred CcccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C
Q 000607 18 TLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~ 93 (1396)
....|+++|..+++.++.| |+++.+|||+|||..++.++..+.. .+++++||+||++|+.|+++.++.+. +
T Consensus 75 ~g~~p~~iQ~~~i~~il~G~d~vi~ApTGsGKT~f~l~~~~~l~~-----~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~ 149 (1171)
T TIGR01054 75 VGSEPWSIQKMWAKRVLRGDSFAIIAPTGVGKTTFGLAMSLFLAK-----KGKRCYIILPTTLLVIQVAEKISSLAEKAG 149 (1171)
T ss_pred cCCCCcHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEeCHHHHHHHHHHHHHHHHHhcC
Confidence 3446999999999999998 8999999999999855444333221 36789999999999999999999865 3
Q ss_pred Ce---EEEEeCCCCcccCCccchHHhhc-cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LK---VGKYWGDMGVDFWDGATWKEEMS-KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~---v~~~~G~~~~~~~~~~~~~~~~~-~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
+. ++.++|+..... ....|..... +++|+|+||+.|.+.+.. +.. +++++|+||||++.+
T Consensus 150 i~~~~i~~~~Gg~~~~e-~~~~~~~l~~~~~dIlV~Tp~rL~~~~~~--l~~-~~~~iVvDEaD~~L~ 213 (1171)
T TIGR01054 150 VGTVNIGAYHSRLPTKE-KKEFMERIENGDFDILITTTMFLSKNYDE--LGP-KFDFIFVDDVDALLK 213 (1171)
T ss_pred CceeeeeeecCCCCHHH-HHHHHHHHhcCCCCEEEECHHHHHHHHHH--hcC-CCCEEEEeChHhhhh
Confidence 43 345778754331 0112333333 489999999999887664 222 899999999999986
No 103
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.89 E-value=5.1e-22 Score=252.92 Aligned_cols=334 Identities=22% Similarity=0.232 Sum_probs=220.9
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~- 93 (1396)
...++.||.++++.+.+| |+||+.+||||||.++++.|-+ +.++.+ ..++|+|-||++|+..|.+.++++. +
T Consensus 68 ~~~lY~HQ~~A~~~~~~G~~vvVtTgTgSGKTe~FllPIld--~~l~~~-~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~ 144 (851)
T COG1205 68 IERLYSHQVDALRLIREGRNVVVTTGTGSGKTESFLLPILD--HLLRDP-SARALLLYPTNALANDQAERLRELISDLPG 144 (851)
T ss_pred cccccHHHHHHHHHHHCCCCEEEECCCCCchhHHHHHHHHH--HHhhCc-CccEEEEechhhhHhhHHHHHHHHHHhCCC
Confidence 334899999999999998 9999999999999999986653 334333 4479999999999999999999864 3
Q ss_pred -CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc----CccccceeEEEEeccccccCC--CcHHHHHH
Q 000607 94 -LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS----YFKLNMIKVLILDECHHARGK--HQYACIMT 166 (1396)
Q Consensus 94 -~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~----~~~l~~i~llI~DEaH~~~~~--~~~~~im~ 166 (1396)
+++..|.|+.... ....-.-..++|+++||++|.-++.+. .+.++++.+||+||+|-..+- .-.+.+++
T Consensus 145 ~v~~~~y~Gdt~~~----~r~~~~~~pp~IllTNpdMLh~~llr~~~~~~~~~~~Lk~lVvDElHtYrGv~GS~vA~llR 220 (851)
T COG1205 145 KVTFGRYTGDTPPE----ERRAIIRNPPDILLTNPDMLHYLLLRNHDAWLWLLRNLKYLVVDELHTYRGVQGSEVALLLR 220 (851)
T ss_pred cceeeeecCCCChH----HHHHHHhCCCCEEEeCHHHHHHHhccCcchHHHHHhcCcEEEEecceeccccchhHHHHHHH
Confidence 7888899985432 111223457999999999998744322 345677999999999988853 23445555
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
...... + ..+..|+++..|||..+.+. .. +...+.......+ ....+......+.+.+-...
T Consensus 221 RL~~~~-~-~~~~~~q~i~~SAT~~np~e---------~~---~~l~~~~f~~~v~----~~g~~~~~~~~~~~~p~~~~ 282 (851)
T COG1205 221 RLLRRL-R-RYGSPLQIICTSATLANPGE---------FA---EELFGRDFEVPVD----EDGSPRGLRYFVRREPPIRE 282 (851)
T ss_pred HHHHHH-h-ccCCCceEEEEeccccChHH---------HH---HHhcCCcceeecc----CCCCCCCceEEEEeCCcchh
Confidence 554322 1 23457899999999876432 11 2222221111000 11223333333333321000
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.. . . .+
T Consensus 283 ~~--~----~-----------~r--------------------------------------------------------- 288 (851)
T COG1205 283 LA--E----S-----------IR--------------------------------------------------------- 288 (851)
T ss_pred hh--h----h-----------cc---------------------------------------------------------
Confidence 00 0 0 00
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.++...+..+... ...++.++|+|+.++..++.+..-
T Consensus 289 ------------------------------------------~s~~~~~~~~~~~-~~~~~~~tL~F~~sr~~~e~~~~~ 325 (851)
T COG1205 289 ------------------------------------------RSALAELATLAAL-LVRNGIQTLVFFRSRKQVELLYLS 325 (851)
T ss_pred ------------------------------------------cchHHHHHHHHHH-HHHcCceEEEEEehhhhhhhhhhc
Confidence 0000001111111 123688999999999999998632
Q ss_pred H----HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC-cHHH
Q 000607 407 L----SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR-TVCS 481 (1396)
Q Consensus 407 L----~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~-s~~~ 481 (1396)
. ....+. ....+.... .+|...+|.++...|++|++.++++|+.+|-||||.+++.||....|. +..+
T Consensus 326 ~~~~~~~~~~~-l~~~v~~~~------~~~~~~er~~ie~~~~~g~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~ 398 (851)
T COG1205 326 PRRRLVREGGK-LLDAVSTYR------AGLHREERRRIEAEFKEGELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLS 398 (851)
T ss_pred hhHHHhhcchh-hhhheeecc------ccCCHHHHHHHHHHHhcCCccEEecchhhhhceeehhhhhHhhcCCCCchHHH
Confidence 2 222100 011222222 348999999999999999999999999999999999999999999999 9999
Q ss_pred HHHhhhcccCCCCc-EEEEEe
Q 000607 482 FIQSRGRARMQNSD-YLLMVK 501 (1396)
Q Consensus 482 yiQr~GRA~R~gs~-~i~lv~ 501 (1396)
+.|+.|||||.+.. .++++.
T Consensus 399 ~~Q~~GRaGR~~~~~l~~~v~ 419 (851)
T COG1205 399 FRQRAGRAGRRGQESLVLVVL 419 (851)
T ss_pred HHHhhhhccCCCCCceEEEEe
Confidence 99999999999843 333333
No 104
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=1.1e-21 Score=248.54 Aligned_cols=337 Identities=16% Similarity=0.120 Sum_probs=194.3
Q ss_pred ccchHHHHHHHHHHhc-CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh-----cC
Q 000607 20 PFARNYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH-----TD 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~-----~~ 93 (1396)
..||++|..+.+.... +.+||.+|||+|||.+|++++..+.. .....+++|..||+++++|.++.++++ ..
T Consensus 285 ~~p~p~Q~~~~~~~~~pgl~ileApTGsGKTEAAL~~A~~l~~---~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~~ 361 (878)
T PRK09694 285 YQPRQLQTLVDALPLQPGLTIIEAPTGSGKTEAALAYAWRLID---QGLADSIIFALPTQATANAMLSRLEALASKLFPS 361 (878)
T ss_pred CCChHHHHHHHhhccCCCeEEEEeCCCCCHHHHHHHHHHHHHH---hCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcCC
Confidence 4699999988544332 36999999999999999887665433 334567999999999999999988752 24
Q ss_pred CeEEEEeCCCCccc-C----C--------c------cchHHhh----ccCcEEEecHHHHH-HhHhhcCccccce----e
Q 000607 94 LKVGKYWGDMGVDF-W----D--------G------ATWKEEM----SKHEVLVMTPQILL-DGLRLSYFKLNMI----K 145 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~-~----~--------~------~~~~~~~----~~~~ViV~T~q~L~-~~l~~~~~~l~~i----~ 145 (1396)
.++.+.+|....+. + . . ..|.... --.+|+|+|...++ ..+...+..+..+ +
T Consensus 362 ~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh~~lR~~~La~s 441 (878)
T PRK09694 362 PNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKHRFIRGFGLGRS 441 (878)
T ss_pred CceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccchHHHHHHhhccC
Confidence 56788887643110 0 0 0 1333211 13799999986555 4454332222333 4
Q ss_pred EEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhh
Q 000607 146 VLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESV 225 (1396)
Q Consensus 146 llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~ 225 (1396)
+|||||+|.+-. -+..++....... ....-.++.||||+... .. ..|...+.... .
T Consensus 442 vvIiDEVHAyD~--ym~~lL~~~L~~l----~~~g~~vIllSATLP~~--------~r---~~L~~a~~~~~-------~ 497 (878)
T PRK09694 442 VLIVDEVHAYDA--YMYGLLEAVLKAQ----AQAGGSVILLSATLPAT--------LK---QKLLDTYGGHD-------P 497 (878)
T ss_pred eEEEechhhCCH--HHHHHHHHHHHHH----HhcCCcEEEEeCCCCHH--------HH---HHHHHHhcccc-------c
Confidence 899999998832 2333444443221 12234589999998541 11 12222221110 0
Q ss_pred hcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Q 000607 226 LSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLAL 305 (1396)
Q Consensus 226 l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~ 305 (1396)
.... ..|......... . . .. + ...
T Consensus 498 ~~~~--------~~YPlvt~~~~~-~-~-~~-------~-------~~~------------------------------- 521 (878)
T PRK09694 498 VELS--------SAYPLITWRGVN-G-A-QR-------F-------DLS------------------------------- 521 (878)
T ss_pred cccc--------cccccccccccc-c-c-ee-------e-------ecc-------------------------------
Confidence 0000 001100000000 0 0 00 0 000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCC
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGV 385 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~ 385 (1396)
. .... .+........ ........+....+..++... .
T Consensus 522 ----~-~~~~-------------------------------~~~~~~v~v~-----~~~~~~~~~~~~~l~~i~~~~--~ 558 (878)
T PRK09694 522 ----A-HPEQ-------------------------------LPARFTIQLE-----PICLADMLPDLTLLQRMIAAA--N 558 (878)
T ss_pred ----c-cccc-------------------------------cCcceEEEEE-----eeccccccCHHHHHHHHHHHH--h
Confidence 0 0000 0000000000 000000011111122222221 2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHH----HHHHHHH-hcCC---eeEEEEecc
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQ----NEIVEEF-RRGL---VNVIVATSI 457 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r----~~~l~~F-r~g~---~nvLVaTsv 457 (1396)
.+.+++||||++..|..+++.|++..+ ...++..+||. ++..+| +++++.| ++|+ ..|||||+|
T Consensus 559 ~g~~vLVf~NTV~~Aq~ly~~L~~~~~--~~~~v~llHsr------f~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQV 630 (878)
T PRK09694 559 AGAQVCLICNLVDDAQKLYQRLKELNN--TQVDIDLFHAR------FTLNDRREKEQRVIENFGKNGKRNQGRILVATQV 630 (878)
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhhCC--CCceEEEEeCC------CCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcc
Confidence 567899999999999999999996421 13678899997 476666 4678899 6676 479999999
Q ss_pred cccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 458 LEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 458 leeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+|.|||| +++++|....| ..+++||.||++|.+
T Consensus 631 iE~GLDI-d~DvlItdlaP--idsLiQRaGR~~R~~ 663 (878)
T PRK09694 631 VEQSLDL-DFDWLITQLCP--VDLLFQRLGRLHRHH 663 (878)
T ss_pred hhheeec-CCCeEEECCCC--HHHHHHHHhccCCCC
Confidence 9999999 68999998888 679999999999975
No 105
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.89 E-value=7.4e-21 Score=240.37 Aligned_cols=375 Identities=16% Similarity=0.157 Sum_probs=208.9
Q ss_pred cccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHH
Q 000607 19 LPFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEA 87 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~ 87 (1396)
.+.+|.||.++++++.+ ++.+|+++||||||++++.+++.+.. ..+.++++||||+..|+.|+.+.
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~---~~~~~~vl~lvdR~~L~~Q~~~~ 312 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALE---LLKNPKVFFVVDRRELDYQLMKE 312 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHh---hcCCCeEEEEECcHHHHHHHHHH
Confidence 45699999999987753 25999999999999999988887653 34567899999999999999999
Q ss_pred HHHhcCCeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhc--Cccccce-eEEEEeccccccCCCcHH
Q 000607 88 IKMHTDLKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLS--YFKLNMI-KVLILDECHHARGKHQYA 162 (1396)
Q Consensus 88 i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~--~~~l~~i-~llI~DEaH~~~~~~~~~ 162 (1396)
|+.+..-.+ .+.. +...+...+. ..+|+|+|.|.|.+.+... ......- .+||+|||||.... .+.
T Consensus 313 f~~~~~~~~---~~~~-----s~~~L~~~l~~~~~~iivtTiQk~~~~~~~~~~~~~~~~~~~lvIvDEaHrs~~~-~~~ 383 (667)
T TIGR00348 313 FQSLQKDCA---ERIE-----SIAELKRLLEKDDGGIIITTIQKFDKKLKEEEEKFPVDRKEVVVIFDEAHRSQYG-ELA 383 (667)
T ss_pred HHhhCCCCC---cccC-----CHHHHHHHHhCCCCCEEEEEhHHhhhhHhhhhhccCCCCCCEEEEEEcCccccch-HHH
Confidence 998753111 1110 1122333332 4689999999998644321 1111122 38999999998653 466
Q ss_pred HHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC
Q 000607 163 CIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY 242 (1396)
Q Consensus 163 ~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~ 242 (1396)
..|+.++ +....|||||||........ ........+..++..+-.+.+......| +.|..
T Consensus 384 ~~l~~~~---------p~a~~lGfTaTP~~~~d~~t-------~~~f~~~fg~~i~~Y~~~~AI~dG~~~~----i~Y~~ 443 (667)
T TIGR00348 384 KNLKKAL---------KNASFFGFTGTPIFKKDRDT-------SLTFAYVFGRYLHRYFITDAIRDGLTVK----IDYED 443 (667)
T ss_pred HHHHhhC---------CCCcEEEEeCCCcccccccc-------cccccCCCCCeEEEeeHHHHhhcCCeee----EEEEe
Confidence 6665544 12479999999987532211 0011111234444444444444432222 22322
Q ss_pred CCCchhh-HHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhh
Q 000607 243 DEIPHAL-YTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAW 321 (1396)
Q Consensus 243 ~~~~~~~-~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~ 321 (1396)
......+ ...+...++.. ...... .++.
T Consensus 444 ~~~~~~~~~~~l~~~~~~~----~~~~~~---------------------------~~~~-------------------- 472 (667)
T TIGR00348 444 RLPEDHLDRKKLDAFFDEI----FELLPE---------------------------RIRE-------------------- 472 (667)
T ss_pred cchhhccChHHHHHHHHHH----HHhhhc---------------------------cccH--------------------
Confidence 1110000 00000000000 000000 0000
Q ss_pred hhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHH
Q 000607 322 EQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAI 401 (1396)
Q Consensus 322 ~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~ 401 (1396)
.. ...+.............. .........+++-...+......+++|||.+|..|.
T Consensus 473 -----~~----~~~l~~~~~~~~~~~~~~---------------~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~ 528 (667)
T TIGR00348 473 -----IT----KESLKEKLQKTKKILFNE---------------DRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACV 528 (667)
T ss_pred -----HH----HHHHHHHHHHHHhhhcCh---------------HHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHH
Confidence 00 000000000000000000 000111122222222212223589999999999999
Q ss_pred HHHHHHHhhcCCCCCceeeEEecCCCCcC-----------C--CC--HHHHHHHHHHHhc-CCeeEEEEecccccccCCC
Q 000607 402 VLQSLLSELLPRHCTWKTKYIAGNNSGIQ-----------C--QS--RKKQNEIVEEFRR-GLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 402 ~L~~~L~~~~p~~~~~~~~~l~G~~~~~~-----------~--ms--~~~r~~~l~~Fr~-g~~nvLVaTsvleeGiDIp 465 (1396)
.+.+.|.+..+...+.....++|...... . .. .....+++++|++ +..+|||+++++.+|+|.|
T Consensus 529 ~~~~~l~~~~~~~~~~~~vv~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP 608 (667)
T TIGR00348 529 EEKNALDEELNEKFEASAIVMTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAP 608 (667)
T ss_pred HHHHHHHhhcccccCCeeEEecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCC
Confidence 99999987755422344555655432110 0 00 1123578999987 6789999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCC---CCcEEEEEe
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQ---NSDYLLMVK 501 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~---gs~~i~lv~ 501 (1396)
.+++++..-+.. ...++|.+||+-|. +..+..+++
T Consensus 609 ~l~tLyldKplk-~h~LlQai~R~nR~~~~~K~~g~IvD 646 (667)
T TIGR00348 609 ILNTLYLDKPLK-YHGLLQAIARTNRIDGKDKTFGLIVD 646 (667)
T ss_pred ccceEEEecccc-ccHHHHHHHHhccccCCCCCCEEEEE
Confidence 999887655444 45789999999993 234545554
No 106
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=99.89 E-value=5.5e-21 Score=232.34 Aligned_cols=406 Identities=17% Similarity=0.191 Sum_probs=240.2
Q ss_pred cccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCC-----cEEEEEeCCcccHH
Q 000607 19 LPFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSP-----FVAVFLVPKVVLVP 82 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~-----k~vl~LvPt~~Lv~ 82 (1396)
...+||+|.|+++..-+ +.+|++..+|+|||+..+.+|..++.. .+. .+.+|++|. .|+.
T Consensus 236 ~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq---~P~~~~~~~k~lVV~P~-sLv~ 311 (776)
T KOG0390|consen 236 KKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQ---FPQAKPLINKPLVVAPS-SLVN 311 (776)
T ss_pred hhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHh---CcCccccccccEEEccH-HHHH
Confidence 44589999999997654 249999999999999999999877554 344 789999999 9999
Q ss_pred HHHHHHHHhcC---CeEEEEeCCCCcccCC-ccchHHhhc---cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccc
Q 000607 83 QQAEAIKMHTD---LKVGKYWGDMGVDFWD-GATWKEEMS---KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHA 155 (1396)
Q Consensus 83 Q~~~~i~~~~~---~~v~~~~G~~~~~~~~-~~~~~~~~~---~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~ 155 (1396)
.|+++|.++.+ +....++|..+. .|- ...|..... ..-|++.+++.+.+..+ .+....+++||+||+|+.
T Consensus 312 nWkkEF~KWl~~~~i~~l~~~~~~~~-~w~~~~sil~~~~~~~~~~vli~sye~~~~~~~--~il~~~~glLVcDEGHrl 388 (776)
T KOG0390|consen 312 NWKKEFGKWLGNHRINPLDFYSTKKS-SWIKLKSILFLGYKQFTTPVLIISYETASDYCR--KILLIRPGLLVCDEGHRL 388 (776)
T ss_pred HHHHHHHHhccccccceeeeecccch-hhhhhHHHHHhhhhheeEEEEeccHHHHHHHHH--HHhcCCCCeEEECCCCCc
Confidence 99999999875 455556665332 222 222322221 46788999999976554 455678999999999999
Q ss_pred cCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchh-----------------------------------
Q 000607 156 RGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQ----------------------------------- 200 (1396)
Q Consensus 156 ~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~----------------------------------- 200 (1396)
++.. .. ++... ..-+.||.+.||+||.+++..+...
T Consensus 389 kN~~--s~----~~kaL---~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e 459 (776)
T KOG0390|consen 389 KNSD--SL----TLKAL---SSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEE 459 (776)
T ss_pred cchh--hH----HHHHH---HhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchh
Confidence 8742 22 22221 1235789999999999976322100
Q ss_pred --hHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHH
Q 000607 201 --DYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQA 278 (1396)
Q Consensus 201 --~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~ 278 (1396)
.-.+.+.+|-.+.+.-+... ..+.+.++.|.-.+.++...+..+...++..+.... .
T Consensus 460 ~~~~~~rl~eL~~~t~~fi~rr-t~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~------~-------------- 518 (776)
T KOG0390|consen 460 DREREERLQELRELTNKFILRR-TGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSM------K-------------- 518 (776)
T ss_pred hhhhHHHHHHHHHHHHhheeec-ccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHH------H--------------
Confidence 00001112222222111111 112344444444444444443222111111111110 0
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhh--hcccchHHHHHHHHHHHHHHHHHhccCCCccccC
Q 000607 279 ELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWE--QLDGFGETIIKKFGSDASQALVTYVPSGAEWSIG 356 (1396)
Q Consensus 279 ~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~ 356 (1396)
....+.+ .++. .-.++..-+++.... +....+. .+..... .+ ..
T Consensus 519 ---~~~~~~~---------~l~~------~~~L~k~cnhP~L~~~~~~~~~e~----~~~~~~~-~~-----------~~ 564 (776)
T KOG0390|consen 519 ---MRTLKGY---------ALEL------ITKLKKLCNHPSLLLLCEKTEKEK----AFKNPAL-LL-----------DP 564 (776)
T ss_pred ---hhhhhcc---------hhhH------HHHHHHHhcCHHhhcccccccccc----cccChHh-hh-----------cc
Confidence 0000000 0000 001111111111000 0000000 0000000 00 00
Q ss_pred CCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 357 DDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 357 ~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
.........+..+.|+..|+.+|...+.....++.+-.+.+.+.+.+..+++- .|..+..++|+ |+.++
T Consensus 565 ~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~-----~g~~~~rLdG~------~~~~q 633 (776)
T KOG0390|consen 565 GKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRW-----RGYEVLRLDGK------TSIKQ 633 (776)
T ss_pred cccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhh-----cCceEEEEcCC------CchHH
Confidence 00111112334588999999988654434455566666677777777666663 58999999998 59999
Q ss_pred HHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEEecCCcc
Q 000607 437 QNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMVKSGDST 506 (1396)
Q Consensus 437 r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv~~~~~~ 506 (1396)
|+.+++.|.+.. .-.|.+|.+.++||++-+++-||.||+.|||..-.|+++||-|.|++ .|.|+..|..+
T Consensus 634 Rq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dWNPa~d~QAmaR~~RdGQKk~v~iYrLlatGtiE 710 (776)
T KOG0390|consen 634 RQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDWNPAVDQQAMARAWRDGQKKPVYIYRLLATGTIE 710 (776)
T ss_pred HHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCCCchhHHHHHHHhccCCCcceEEEEEeecCCCch
Confidence 999999998733 33566778899999999999999999999999999999999999984 45566666443
No 107
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=8.4e-22 Score=254.67 Aligned_cols=314 Identities=17% Similarity=0.118 Sum_probs=196.4
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..+..++++.+.++ .+||+++||||||...-.++. + ...+...++++.-|.+.-+...+..+.+..+..++...|
T Consensus 69 ~~~~~~Il~~l~~~~vvii~g~TGSGKTTqlPq~ll---e-~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~~VG 144 (1283)
T TIGR01967 69 SAKREDIAEAIAENQVVIIAGETGSGKTTQLPKICL---E-LGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGEKVG 144 (1283)
T ss_pred HHHHHHHHHHHHhCceEEEeCCCCCCcHHHHHHHHH---H-cCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcceEEe
Confidence 44555666666555 478999999999986332221 2 111223456677799888888888888888877777766
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccc-ccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHH-ARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~-~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
-. +. ++ ...-.+.+|.|||+++|++.+.+.. .++++++|||||||. ..+-.-.-.+++... . ....
T Consensus 145 Y~-vR-~~----~~~s~~T~I~~~TdGiLLr~l~~d~-~L~~~~~IIIDEaHERsL~~D~LL~lLk~il----~--~rpd 211 (1283)
T TIGR01967 145 YK-VR-FH----DQVSSNTLVKLMTDGILLAETQQDR-FLSRYDTIIIDEAHERSLNIDFLLGYLKQLL----P--RRPD 211 (1283)
T ss_pred eE-Ec-CC----cccCCCceeeeccccHHHHHhhhCc-ccccCcEEEEcCcchhhccchhHHHHHHHHH----h--hCCC
Confidence 31 11 11 1112368999999999999887654 378999999999994 544221111222222 1 1223
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
.++++||||... ..+.+.++ +.++.+.. ...|.+ +.|........
T Consensus 212 LKlIlmSATld~--------------~~fa~~F~~apvI~V~G-------r~~PVe--v~Y~~~~~~~~----------- 257 (1283)
T TIGR01967 212 LKIIITSATIDP--------------ERFSRHFNNAPIIEVSG-------RTYPVE--VRYRPLVEEQE----------- 257 (1283)
T ss_pred CeEEEEeCCcCH--------------HHHHHHhcCCCEEEECC-------Ccccce--eEEeccccccc-----------
Confidence 579999999832 12333332 22222100 000110 11111000000
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
..
T Consensus 258 -------------------------------------------------------------------~~----------- 259 (1283)
T TIGR01967 258 -------------------------------------------------------------------DD----------- 259 (1283)
T ss_pred -------------------------------------------------------------------ch-----------
Confidence 00
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCcee
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKT 419 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~ 419 (1396)
...+...+.+.+..........+|||++++..+..+.+.|.+... .++.+
T Consensus 260 ----------------------------~~~~~~~i~~~I~~l~~~~~GdILVFLpg~~EI~~l~~~L~~~~~--~~~~V 309 (1283)
T TIGR01967 260 ----------------------------DLDQLEAILDAVDELFAEGPGDILIFLPGEREIRDAAEILRKRNL--RHTEI 309 (1283)
T ss_pred ----------------------------hhhHHHHHHHHHHHHHhhCCCCEEEeCCCHHHHHHHHHHHHhcCC--CCcEE
Confidence 001111122222211112346899999999999999999986421 35667
Q ss_pred eEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCC------------------cHHH
Q 000607 420 KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSR------------------TVCS 481 (1396)
Q Consensus 420 ~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~------------------s~~~ 481 (1396)
..+||. |++.+|.++++.+ +..+|||||+++|.|||||++.+||+++.+. |..+
T Consensus 310 lpLhg~------Ls~~eQ~~vf~~~--~~rkIVLATNIAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkas 381 (1283)
T TIGR01967 310 LPLYAR------LSNKEQQRVFQPH--SGRRIVLATNVAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQAS 381 (1283)
T ss_pred EeccCC------CCHHHHHHHhCCC--CCceEEEeccHHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHH
Confidence 888887 6999999886654 3468999999999999999999999988532 5679
Q ss_pred HHHhhhcccCCC-CcEEEEEecC
Q 000607 482 FIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 482 yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
|+||.|||||.+ |.|+.++++.
T Consensus 382 a~QRaGRAGR~~~G~cyRLyte~ 404 (1283)
T TIGR01967 382 ANQRKGRCGRVAPGICIRLYSEE 404 (1283)
T ss_pred HHHHhhhhCCCCCceEEEecCHH
Confidence 999999999987 6888888754
No 108
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.88 E-value=2.6e-22 Score=205.33 Aligned_cols=161 Identities=17% Similarity=0.222 Sum_probs=125.9
Q ss_pred cchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CCe
Q 000607 21 FARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DLK 95 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~~ 95 (1396)
-|.+.|.+.++.++-| ++++.+..|.|||.++++.- +.+...-++.-.++++|.|++|+.|...+..++. +.+
T Consensus 64 hpsevqhecipqailgmdvlcqaksgmgktavfvl~t--lqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 64 HPSEVQHECIPQAILGMDVLCQAKSGMGKTAVFVLAT--LQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred CchHhhhhhhhHHhhcchhheecccCCCceeeeehhh--hhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 3788999999999888 99999999999999887632 2233333455678999999999999998888764 689
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~ 175 (1396)
+..++|++.... + ......-++|+|+||++++.+.+++.++++++...|+|||+.+...-.+++-+++....
T Consensus 142 vaVFfGG~~Ikk-d---ee~lk~~PhivVgTPGrilALvr~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~---- 213 (387)
T KOG0329|consen 142 VSVFFGGLFIKK-D---EELLKNCPHIVVGTPGRILALVRNRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM---- 213 (387)
T ss_pred EEEEEcceeccc-c---HHHHhCCCeEEEcCcHHHHHHHHhccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhc----
Confidence 999999976652 1 12222368999999999999999999999999999999999998776666666666532
Q ss_pred CCCCCCeEEEEeccCCC
Q 000607 176 GDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~ 192 (1396)
.....+++.+|||...
T Consensus 214 -tp~~KQvmmfsatlsk 229 (387)
T KOG0329|consen 214 -TPHEKQVMMFSATLSK 229 (387)
T ss_pred -Ccccceeeeeeeecch
Confidence 2333467888998743
No 109
>smart00535 RIBOc Ribonuclease III family.
Probab=99.88 E-value=1e-22 Score=204.57 Aligned_cols=127 Identities=46% Similarity=0.638 Sum_probs=111.3
Q ss_pred HHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhc
Q 000607 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILH 1245 (1396)
Q Consensus 1166 ~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~ 1245 (1396)
.||.+||||||+..+ ..+|||||||||+||+++++.|+|.++|+.+++.|+.+++.+|+|+.|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~--~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~ 78 (129)
T smart00535 1 SLLLRALTHASYSNE--HEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRL 78 (129)
T ss_pred CHHHHHhhccccccc--CcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHcc
Confidence 378999999999732 269999999999999999999999999999999999999999999999999999999999998
Q ss_pred CChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccC
Q 000607 1246 ASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMIT 1317 (1396)
Q Consensus 1246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~ 1317 (1396)
+....... | ...+|+++|+|||+|||||+|+|. +.+++|+..++.|.++
T Consensus 79 ~~~~~~~~------------------~---~~~~k~~a~~~eAliGAi~ld~g~--~~~~~~i~~~~~~~~~ 127 (129)
T smart00535 79 GRGEAISG------------------G---RDKPSILADVFEALIGAIYLDSGL--EAAREFIRDLLGPRLE 127 (129)
T ss_pred CchHhhcC------------------C---cccchHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHhc
Confidence 87543210 1 257899999999999999999985 7999999988876543
No 110
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.87 E-value=1.1e-22 Score=205.61 Aligned_cols=130 Identities=43% Similarity=0.576 Sum_probs=114.6
Q ss_pred HHHHHHhccCCCCCCCCCCccchhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhc
Q 000607 1166 SLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILH 1245 (1396)
Q Consensus 1166 ~ll~~Alth~S~~~~~~~~~yerLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~ 1245 (1396)
.|+.+||||+|+.......+|||||||||+||+++++.|++.++|+.+++.++.+++.+|||.+|+.+|.++||+++++.
T Consensus 1 ~ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~ 80 (133)
T cd00593 1 SLLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRL 80 (133)
T ss_pred CHHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhcc
Confidence 37899999999973333589999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHHHHHhhheeeecCCChHHHHHHhhhccccccCc
Q 000607 1246 ASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVVFQSIRPLLEPMITP 1318 (1396)
Q Consensus 1246 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~~l~~~~~~ 1318 (1396)
.+..... .....+|+++|+|||+|||||+|+|. +.+++|+..++.|.+..
T Consensus 81 ~~~~~~~---------------------~~~~~~k~~ad~~eAliGAiyld~g~--~~~~~~i~~~~~~~~~~ 130 (133)
T cd00593 81 GKGEEKS---------------------GGRLRPKILADVFEALIGAIYLDGGF--EAARKFLLRLLGPLIEE 130 (133)
T ss_pred CchHhhc---------------------CCcccccHHHHHHHHHHHHHHHhCCH--HHHHHHHHHHHHHHHhh
Confidence 8765421 11457899999999999999999998 78999999988776543
No 111
>PF14622 Ribonucleas_3_3: Ribonuclease-III-like; PDB: 1O0W_A 2A11_A 3N3W_B.
Probab=99.87 E-value=5.8e-23 Score=203.82 Aligned_cols=120 Identities=32% Similarity=0.465 Sum_probs=97.0
Q ss_pred HHHHHHHhcccCccc--cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccc
Q 000607 978 TIKVLEAITTKKCQE--DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRT 1055 (1396)
Q Consensus 978 ~~~l~~AlT~~s~~~--~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~ 1055 (1396)
+.++++||||+|+.. .-||||||||||+||+++++.++|..+| .++|.++..|+.+|+|.+|+++|.++||+++|+
T Consensus 2 ~~Ll~~alTH~S~~~~~~~~nerLefLGd~vL~~~vs~~l~~~~~-~~~g~l~~~~~~lv~~~~La~~a~~lgL~~~i~- 79 (128)
T PF14622_consen 2 DELLLQALTHKSYAHERKPNNERLEFLGDAVLGLVVSEYLFQRPP-ADEGELTRLRSNLVSNETLAEIAKQLGLDKLIR- 79 (128)
T ss_dssp HHHHHHHTB-HHHHHHTCB-SHHHHHHHHHHHHHHHHHHHHHHTT-TSCHHHHHHHHHHHSHHHHHHHHHHTTCGGC-B-
T ss_pred HHHHHHHhcCccccccccCccHHHHHHHHHHHHHHHHHHHHhCcC-ccchHHHHHHHHHhChHHHHHHHHHCCHHHHHH-
Confidence 478999999999864 3599999999999999999999999954 489999999999999999999999999999999
Q ss_pred cccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1056 ESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1056 ~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
| .++. . ........|.+||+|||+|||+|+|+|.+.|.+|+...
T Consensus 80 -------~-~~~~----------~---------~~~~~~~~~vlad~feAliGAiyld~G~~~a~~~i~~~ 123 (128)
T PF14622_consen 80 -------W-GPGE----------E---------KSGGSGSDKVLADVFEALIGAIYLDSGFEAARKFIQKL 123 (128)
T ss_dssp ----------HHH----------H---------HTTGGG-HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred -------h-CccH----------h---------hcCCCCCccHHHhHHHHHHHHHHHHcCHHHHHHHHHHH
Confidence 3 2211 0 00112467899999999999999999999999997643
No 112
>PRK00102 rnc ribonuclease III; Reviewed
Probab=99.86 E-value=6.3e-22 Score=219.43 Aligned_cols=134 Identities=27% Similarity=0.356 Sum_probs=116.4
Q ss_pred HHHHHHHhhccccCCCCCHHHHHHHhcccCccc----cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhcc
Q 000607 960 VNLKNMLLDHCMQNVTIPTIKVLEAITTKKCQE----DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERII 1035 (1396)
Q Consensus 960 ~~l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~----~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v 1035 (1396)
..|++.|+|+|++. .++++||||+|+.. ..||||||||||++|+++++.+||..||+.++|.|+.+|+.+|
T Consensus 6 ~~l~~~lg~~f~~~-----~ll~~Alth~S~~~~~~~~~~nerLefLGDavl~~~v~~~l~~~~p~~~~g~l~~~~~~lv 80 (229)
T PRK00102 6 EELQKKLGYTFKDP-----ELLIQALTHRSYANENKGLKHNERLEFLGDAVLELVVSEYLFKRFPDLDEGDLSKLRAALV 80 (229)
T ss_pred HHHHHHhCCCCCCH-----HHHHHHhCccchhccCCCcccchhHHHHHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHh
Confidence 46889999999886 89999999999853 4599999999999999999999999999999999999999999
Q ss_pred ccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1036 SNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1036 ~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
||.+|+.+|.++||+.||+. .++.. .. .+ ..++|.+||+|||+|||+|+|+|
T Consensus 81 sn~~la~~a~~lgl~~~i~~---------~~~~~----------~~-------~~--~~~~k~~ad~~EA~iGAiyld~g 132 (229)
T PRK00102 81 REESLAEIARELGLGEYLLL---------GKGEE----------KS-------GG--RRRPSILADAFEALIGAIYLDQG 132 (229)
T ss_pred CHHHHHHHHHHCCcHHHHcc---------CcHHH----------Hc-------CC--CCCccHHHHHHHHHHHHHHHhCC
Confidence 99999999999999999982 22210 00 00 13578999999999999999999
Q ss_pred hhHHHHHHhhc
Q 000607 1116 ENVGLIFLDRI 1126 (1396)
Q Consensus 1116 ~~~a~~~~~~l 1126 (1396)
.+.+.+|+..+
T Consensus 133 ~~~~~~~i~~~ 143 (229)
T PRK00102 133 LEAARKFILRL 143 (229)
T ss_pred HHHHHHHHHHH
Confidence 99999998766
No 113
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.86 E-value=4.6e-19 Score=190.08 Aligned_cols=306 Identities=19% Similarity=0.243 Sum_probs=199.8
Q ss_pred cccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 19 LPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
.-.+.++|+.+-+.+.. .++||.+-||+|||.+.--.|..... .|.++.+..|.+..|...+..+++-+
T Consensus 95 ~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~-----~G~~vciASPRvDVclEl~~Rlk~aF~ 169 (441)
T COG4098 95 KGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALN-----QGGRVCIASPRVDVCLELYPRLKQAFS 169 (441)
T ss_pred ccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHh-----cCCeEEEecCcccchHHHHHHHHHhhc
Confidence 34488999988776654 37999999999999976555554322 56789999999999999999998754
Q ss_pred CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 93 ~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
+..+..++|+... .+ ...++|||...|++..+ .+++||+||++.+- |..--.-.+ .
T Consensus 170 ~~~I~~Lyg~S~~----------~f-r~plvVaTtHQLlrFk~-------aFD~liIDEVDAFP----~~~d~~L~~-A- 225 (441)
T COG4098 170 NCDIDLLYGDSDS----------YF-RAPLVVATTHQLLRFKQ-------AFDLLIIDEVDAFP----FSDDQSLQY-A- 225 (441)
T ss_pred cCCeeeEecCCch----------hc-cccEEEEehHHHHHHHh-------hccEEEEecccccc----ccCCHHHHH-H-
Confidence 5889999998422 12 37889999888876643 78999999999875 221111111 1
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHH-HhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLET-LMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~-~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.++.....--++.|||||... |++ .+.......+- | ..|...+.|.+-.-
T Consensus 226 v~~ark~~g~~IylTATp~k~---------------l~r~~~~g~~~~~kl----------p----~RfH~~pLpvPkf~ 276 (441)
T COG4098 226 VKKARKKEGATIYLTATPTKK---------------LERKILKGNLRILKL----------P----ARFHGKPLPVPKFV 276 (441)
T ss_pred HHHhhcccCceEEEecCChHH---------------HHHHhhhCCeeEeec----------c----hhhcCCCCCCCceE
Confidence 111122233478899999641 221 11222211100 0 00111111111000
Q ss_pred HHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHH
Q 000607 252 HLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETI 331 (1396)
Q Consensus 252 ~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~ 331 (1396)
+ .|.|.-
T Consensus 277 ---------------w-------------------------------~~~~~k--------------------------- 283 (441)
T COG4098 277 ---------------W-------------------------------IGNWNK--------------------------- 283 (441)
T ss_pred ---------------E-------------------------------eccHHH---------------------------
Confidence 0 000000
Q ss_pred HHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc
Q 000607 332 IKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL 411 (1396)
Q Consensus 332 ~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~ 411 (1396)
.+....+.+|+.. .|+.. ...+..++||+++..+.+.++..|++..
T Consensus 284 ------------------------------~l~r~kl~~kl~~---~lekq-~~~~~P~liF~p~I~~~eq~a~~lk~~~ 329 (441)
T COG4098 284 ------------------------------KLQRNKLPLKLKR---WLEKQ-RKTGRPVLIFFPEIETMEQVAAALKKKL 329 (441)
T ss_pred ------------------------------HhhhccCCHHHHH---HHHHH-HhcCCcEEEEecchHHHHHHHHHHHhhC
Confidence 0000111444433 33332 2467889999999999999999996532
Q ss_pred CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCC--CcHHHHHHhhhcc
Q 000607 412 PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPS--RTVCSFIQSRGRA 489 (1396)
Q Consensus 412 p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p--~s~~~yiQr~GRA 489 (1396)
...+++++|+.. ..|.+.++.||+|++.+||+|.++|+|+.+|+++++|.-.-. .|..+.+|..||+
T Consensus 330 ---~~~~i~~Vhs~d--------~~R~EkV~~fR~G~~~lLiTTTILERGVTfp~vdV~Vlgaeh~vfTesaLVQIaGRv 398 (441)
T COG4098 330 ---PKETIASVHSED--------QHRKEKVEAFRDGKITLLITTTILERGVTFPNVDVFVLGAEHRVFTESALVQIAGRV 398 (441)
T ss_pred ---CccceeeeeccC--------ccHHHHHHHHHcCceEEEEEeehhhcccccccceEEEecCCcccccHHHHHHHhhhc
Confidence 456778888864 578999999999999999999999999999999998864433 5788999999999
Q ss_pred cCCC----CcEEEEE
Q 000607 490 RMQN----SDYLLMV 500 (1396)
Q Consensus 490 ~R~g----s~~i~lv 500 (1396)
||.- |.++.|-
T Consensus 399 GRs~~~PtGdv~FFH 413 (441)
T COG4098 399 GRSLERPTGDVLFFH 413 (441)
T ss_pred cCCCcCCCCcEEEEe
Confidence 9964 4554443
No 114
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.85 E-value=5.5e-21 Score=240.84 Aligned_cols=312 Identities=18% Similarity=0.207 Sum_probs=213.4
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-|+-|.|++...+.| ++.|.||||.||.+++.+...- .++.+++|.|.++|+..|...+ ...++....+.
T Consensus 265 FR~~Q~eaI~~~l~Gkd~fvlmpTG~GKSLCYQlPA~l--------~~gitvVISPL~SLm~DQv~~L-~~~~I~a~~L~ 335 (941)
T KOG0351|consen 265 FRPNQLEAINATLSGKDCFVLMPTGGGKSLCYQLPALL--------LGGVTVVISPLISLMQDQVTHL-SKKGIPACFLS 335 (941)
T ss_pred CChhHHHHHHHHHcCCceEEEeecCCceeeEeeccccc--------cCCceEEeccHHHHHHHHHHhh-hhcCcceeecc
Confidence 599999999999998 7999999999999998764331 2348999999999999999888 44588888888
Q ss_pred CCCCcccCCccchHHhhc---cCcEEEecHHHHHHh--HhhcCccccc---eeEEEEeccccccCC-C----cHHHHHHH
Q 000607 101 GDMGVDFWDGATWKEEMS---KHEVLVMTPQILLDG--LRLSYFKLNM---IKVLILDECHHARGK-H----QYACIMTE 167 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~---~~~ViV~T~q~L~~~--l~~~~~~l~~---i~llI~DEaH~~~~~-~----~~~~im~~ 167 (1396)
|+..... ....|+.... ..+|+..||+.+... +.+....+.. +.++|+||||+.... | .|.++- .
T Consensus 336 s~q~~~~-~~~i~q~l~~~~~~ikilYvtPE~v~~~~~l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l~-~ 413 (941)
T KOG0351|consen 336 SIQTAAE-RLAILQKLANGNPIIKILYVTPEKVVASEGLLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRLG-L 413 (941)
T ss_pred ccccHHH-HHHHHHHHhCCCCeEEEEEeCHHHhhcccchhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHHH-H
Confidence 8754321 1123444333 479999999998742 2333334445 899999999999853 3 233321 1
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
+. ..... -.+++||||-.. .+.++|-+.-.+-+..++.. -..++. ..|+..
T Consensus 414 l~-----~~~~~-vP~iALTATAT~--------~v~~DIi~~L~l~~~~~~~~--------sfnR~N---L~yeV~---- 464 (941)
T KOG0351|consen 414 LR-----IRFPG-VPFIALTATATE--------RVREDVIRSLGLRNPELFKS--------SFNRPN---LKYEVS---- 464 (941)
T ss_pred HH-----hhCCC-CCeEEeehhccH--------HHHHHHHHHhCCCCcceecc--------cCCCCC---ceEEEE----
Confidence 11 11122 348999999743 22222222212111111110 000000 000000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.
T Consensus 465 ---~---------------------------------------------------------------------------- 465 (941)
T KOG0351|consen 465 ---P---------------------------------------------------------------------------- 465 (941)
T ss_pred ---e----------------------------------------------------------------------------
Confidence 0
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
.........+.+.++. ..++..+||+|.+|.+++.++..|
T Consensus 466 --------------------------------------k~~~~~~~~~~~~~~~--~~~~~s~IIYC~sr~~ce~vs~~L 505 (941)
T KOG0351|consen 466 --------------------------------------KTDKDALLDILEESKL--RHPDQSGIIYCLSRKECEQVSAVL 505 (941)
T ss_pred --------------------------------------ccCccchHHHHHHhhh--cCCCCCeEEEeCCcchHHHHHHHH
Confidence 0000000111112222 246788999999999999999999
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhh
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~G 487 (1396)
... ++++.+.|+. |+.++|+.+.++|-.++++|+|||=+.+.|||.|++..||||.+|.+...|.|-.|
T Consensus 506 ~~~-----~~~a~~YHAG------l~~~~R~~Vq~~w~~~~~~VivATVAFGMGIdK~DVR~ViH~~lPks~E~YYQE~G 574 (941)
T KOG0351|consen 506 RSL-----GKSAAFYHAG------LPPKERETVQKAWMSDKIRVIVATVAFGMGIDKPDVRFVIHYSLPKSFEGYYQEAG 574 (941)
T ss_pred HHh-----chhhHhhhcC------CCHHHHHHHHHHHhcCCCeEEEEEeeccCCCCCCceeEEEECCCchhHHHHHHhcc
Confidence 975 6777777765 89999999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC--CcEEEEEecC
Q 000607 488 RARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 488 RA~R~g--s~~i~lv~~~ 503 (1396)
||||-| +.++++..-.
T Consensus 575 RAGRDG~~s~C~l~y~~~ 592 (941)
T KOG0351|consen 575 RAGRDGLPSSCVLLYGYA 592 (941)
T ss_pred ccCcCCCcceeEEecchh
Confidence 999999 6777776544
No 115
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=1.6e-20 Score=228.65 Aligned_cols=328 Identities=21% Similarity=0.307 Sum_probs=204.8
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHH-HHHHHHHHhcCC-----CCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIM-LLRSYAYLLRKP-----SPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iail-li~~l~~~~~~~-----~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
+.+.|-.+...++.+ |+++|+|||+|||-+|++ +++++....+.. ..-++++++|..+||..|...|.+.+
T Consensus 310 LNrIQS~v~daAl~~~EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~VgsfSkRla 389 (1674)
T KOG0951|consen 310 LNRIQSKVYDAALRGDENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSFSKRLA 389 (1674)
T ss_pred hhHHHHHHHHHHhcCcCcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHHHhhcc
Confidence 788999999999985 899999999999999998 455443322211 23479999999999999999888653
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcC--ccccceeEEEEeccccccCC-CcH-HHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--FKLNMIKVLILDECHHARGK-HQY-ACIMT 166 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--~~l~~i~llI~DEaH~~~~~-~~~-~~im~ 166 (1396)
|++|+..+|+.... ...+...+|+|+||+...-.-+++. -..+-++++|+||.|...++ .|- ..|..
T Consensus 390 ~~GI~V~ElTgD~~l~-------~~qieeTqVIV~TPEK~DiITRk~gdraY~qlvrLlIIDEIHLLhDdRGpvLESIVa 462 (1674)
T KOG0951|consen 390 PLGITVLELTGDSQLG-------KEQIEETQVIVTTPEKWDIITRKSGDRAYEQLVRLLIIDEIHLLHDDRGPVLESIVA 462 (1674)
T ss_pred ccCcEEEEecccccch-------hhhhhcceeEEeccchhhhhhcccCchhHHHHHHHHhhhhhhhcccccchHHHHHHH
Confidence 78999999986544 4566789999999998743333321 11245899999999999643 232 23333
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
....+. ......+|++|||||..+-.+ .. .|..-+.+....|+..-.|
T Consensus 463 Rt~r~s--es~~e~~RlVGLSATLPNy~D-------------V~-----------------~Fl~v~~~glf~fd~syRp 510 (1674)
T KOG0951|consen 463 RTFRRS--ESTEEGSRLVGLSATLPNYED-------------VA-----------------SFLRVDPEGLFYFDSSYRP 510 (1674)
T ss_pred HHHHHh--hhcccCceeeeecccCCchhh-------------hH-----------------HHhccCcccccccCcccCc
Confidence 333221 122346899999999976321 11 1212112222223222122
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
.++...+.. .. .++.+++
T Consensus 511 vPL~qq~Ig-----------------i~------ek~~~~~--------------------------------------- 528 (1674)
T KOG0951|consen 511 VPLKQQYIG-----------------IT------EKKPLKR--------------------------------------- 528 (1674)
T ss_pred CCccceEec-----------------cc------cCCchHH---------------------------------------
Confidence 221110000 00 0000000
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
.+..... ...+++.. ....++||||.+|..+...++.
T Consensus 529 -------------~qamNe~---------------------------~yeKVm~~---agk~qVLVFVHsRkET~ktA~a 565 (1674)
T KOG0951|consen 529 -------------FQAMNEA---------------------------CYEKVLEH---AGKNQVLVFVHSRKETAKTARA 565 (1674)
T ss_pred -------------HHHHHHH---------------------------HHHHHHHh---CCCCcEEEEEEechHHHHHHHH
Confidence 0000000 00011111 2447899999998877776666
Q ss_pred HHhhc----------CC-------C---------CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccccc
Q 000607 407 LSELL----------PR-------H---------CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEE 460 (1396)
Q Consensus 407 L~~~~----------p~-------~---------~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvlee 460 (1396)
+++.. .. + ..++-..=+|-...++||+..+|..+.+.|++|.+.+||+|..++.
T Consensus 566 IRd~~le~dtls~fmre~s~s~eilrtea~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g~iqvlvstatlaw 645 (1674)
T KOG0951|consen 566 IRDKALEEDTLSRFMREDSASREILRTEAGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADGHIQVLVSTATLAW 645 (1674)
T ss_pred HHHHHhhhhHHHHHHhcccchhhhhhhhhhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcCceeEEEeehhhhh
Confidence 66211 00 0 0001001112112346899999999999999999999999999999
Q ss_pred ccCCCcccEEE----EeCC------CCcHHHHHHhhhcccCCC
Q 000607 461 GLDVQSCNLVI----MFDP------SRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 461 GiDIp~~~lVI----~fD~------p~s~~~yiQr~GRA~R~g 493 (1396)
|+|+|+-.++| -||+ +.++.+.+|+.|||||.+
T Consensus 646 gvnlpahtViikgtqvy~pekg~w~elsp~dv~qmlgragrp~ 688 (1674)
T KOG0951|consen 646 GVNLPAHTVIIKGTQVYDPEKGRWTELSPLDVMQMLGRAGRPQ 688 (1674)
T ss_pred hcCCCcceEEecCccccCcccCccccCCHHHHHHHHhhcCCCc
Confidence 99999988888 4665 457899999999999986
No 116
>smart00535 RIBOc Ribonuclease III family.
Probab=99.85 E-value=1.9e-21 Score=195.22 Aligned_cols=118 Identities=32% Similarity=0.432 Sum_probs=103.7
Q ss_pred HHHHHhcccCccccC-CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccccccc
Q 000607 980 KVLEAITTKKCQEDF-HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESF 1058 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~~-~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f 1058 (1396)
++++||||+|+.+.. ||||||||||+||+++++.++|..+|+.++|.|+.+|+.+|||++|+++|.++||++|++...+
T Consensus 2 ll~~alth~s~~~~~~~~e~Le~lGd~vl~~~v~~~l~~~~p~~~~~~l~~~~~~lvsn~~la~~a~~~~l~~~i~~~~~ 81 (129)
T smart00535 2 LLLRALTHASYSNEHEHNERLEFLGDAVLELVVTEYLYKKYPDLSEGDLSRLRSALVSNETLARLAKKLGLGEFIRLGRG 81 (129)
T ss_pred HHHHHhhcccccccCcchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHCHHHHHHHHHHCCcHHHHccCch
Confidence 688999999998876 9999999999999999999999999999999999999999999999999999999999983211
Q ss_pred CCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhh
Q 000607 1059 DPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDR 1125 (1396)
Q Consensus 1059 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~ 1125 (1396)
.. ......+.|.+||+|||+|||+|+++|.+.+.+|+..
T Consensus 82 --------~~--------------------~~~~~~~~k~~a~~~eAliGAi~ld~g~~~~~~~i~~ 120 (129)
T smart00535 82 --------EA--------------------ISGGRDKPSILADVFEALIGAIYLDSGLEAAREFIRD 120 (129)
T ss_pred --------Hh--------------------hcCCcccchHHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 10 0001147899999999999999999999999998753
No 117
>TIGR02191 RNaseIII ribonuclease III, bacterial. This family consists of bacterial examples of ribonuclease III. This enzyme cleaves double-stranded rRNA. It is involved in processing ribosomal RNA precursors. It is found even in minimal genones such as Mycoplasma genitalium and Buchnera aphidicola, and in some cases has been shown to be an essential gene. These bacterial proteins contain a double-stranded RNA binding motif (pfam00035) and a ribonuclease III domain (pfam00636). Eukaryotic homologs tend to be much longer proteins with additional domains, localized to the nucleus, and not included in this family.
Probab=99.85 E-value=1.8e-21 Score=214.68 Aligned_cols=132 Identities=26% Similarity=0.358 Sum_probs=114.5
Q ss_pred HHHHHhhccccCCCCCHHHHHHHhcccCcccc-----CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccc
Q 000607 962 LKNMLLDHCMQNVTIPTIKVLEAITTKKCQED-----FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIIS 1036 (1396)
Q Consensus 962 l~~~l~~~~~~~~~~~~~~l~~AlT~~s~~~~-----~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1036 (1396)
|++.|+|+|++. .++.+||||+|+... .||||||||||++|+++++.++|..||+.++|.|+.+|+.+||
T Consensus 1 ~e~~lgy~F~~~-----~ll~~Alth~S~~~~~~~~~~~nerLe~lGd~vl~~~~~~~l~~~~p~~~~~~l~~~~~~lvs 75 (220)
T TIGR02191 1 LEKRLGYKFKNK-----ELLEQALTHSSYANEHHKGVKNNERLEFLGDAVLGLVVAEYLFKNFPDLSEGELSKLRAALVS 75 (220)
T ss_pred ChHHhCCCcCCH-----HHHHHHhcCcccccccccCccchHHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHhC
Confidence 467889999887 899999999998643 3999999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh
Q 000607 1037 NAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116 (1396)
Q Consensus 1037 n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~ 1116 (1396)
|.+|+.+|.++||+.||+ ..++.. ......+.|.+||+|||+|||+|+|+|.
T Consensus 76 n~~la~~a~~~gl~~~i~---------~~~~~~-------------------~~~~~~~~k~~ad~~eAliGAiyld~g~ 127 (220)
T TIGR02191 76 EESLAEVARELGLGKFLL---------LGKGEE-------------------KSGGRRRESILADAFEALIGAIYLDSGL 127 (220)
T ss_pred HHHHHHHHHHCCcHHHhc---------cCchHh-------------------hcCCcccchHHHHHHHHHHHHHHHhCCH
Confidence 999999999999999998 222220 0001135789999999999999999999
Q ss_pred hHHHHHHhhc
Q 000607 1117 NVGLIFLDRI 1126 (1396)
Q Consensus 1117 ~~a~~~~~~l 1126 (1396)
+.|.+|+..+
T Consensus 128 ~~~~~~i~~~ 137 (220)
T TIGR02191 128 EAARKFILKL 137 (220)
T ss_pred HHHHHHHHHH
Confidence 9999998765
No 118
>cd00593 RIBOc RIBOc. Ribonuclease III C terminal domain. This group consists of eukaryotic, bacterial and archeal ribonuclease III (RNAse III) proteins. RNAse III is a double stranded RNA-specific endonuclease. Prokaryotic RNAse III is important in post-transcriptional control of mRNA stability and translational efficiency. It is involved in the processing of ribosomal RNA precursors. Prokaryotic RNAse III also plays a role in the maturation of tRNA precursors and in the processing of phage and plasmid transcripts. Eukaryotic RNase III's participate (through direct cleavage) in rRNA processing, in processing of small nucleolar RNAs (snoRNAs) and snRNA's (components of the spliceosome). In eukaryotes RNase III or RNaseIII like enzymes such as Dicer are involved in RNAi (RNA interference) and miRNA (micro-RNA) gene silencing.
Probab=99.85 E-value=1.9e-21 Score=196.68 Aligned_cols=119 Identities=34% Similarity=0.509 Sum_probs=106.3
Q ss_pred HHHHHhcccCcccc---CCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccccc
Q 000607 980 KVLEAITTKKCQED---FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056 (1396)
Q Consensus 980 ~l~~AlT~~s~~~~---~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~ 1056 (1396)
++++||||+|+... .||||||||||+||+++++.++|..+|+.++|.++.+|+.+|||++|+++|.++||++||+..
T Consensus 2 ll~~alth~s~~~~~~~~~~e~Le~lGdavl~~~~~~~l~~~~~~~~~~~l~~~~~~~v~n~~l~~~a~~~gl~~~i~~~ 81 (133)
T cd00593 2 LLLEALTHPSYANEHGRFNNERLEFLGDAVLELVVTEYLFKKFPDLSEGDLTRLRSALVSNETLARLARELGLGKYLRLG 81 (133)
T ss_pred HHHHhhcCccccccCCCcchHHHHHHHHHHHHHHHHHHHHhcCCCCChHHHHHHHHHHHCHHHHHHHHHHcCcHHHhccC
Confidence 68899999999875 799999999999999999999999999999999999999999999999999999999999942
Q ss_pred ccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1057 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
+.... .....++|.+||+|||+|||+|+++|.+.+.+|+.++
T Consensus 82 ~~~~~----------------------------~~~~~~~k~~ad~~eAliGAiyld~g~~~~~~~i~~~ 123 (133)
T cd00593 82 KGEEK----------------------------SGGRLRPKILADVFEALIGAIYLDGGFEAARKFLLRL 123 (133)
T ss_pred chHhh----------------------------cCCcccccHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 22110 0123678999999999999999999999999999885
No 119
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=99.84 E-value=2.7e-20 Score=207.13 Aligned_cols=330 Identities=18% Similarity=0.258 Sum_probs=215.4
Q ss_pred CCcccchHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 17 DTLPFARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
.|..++||||...+.+...+ ..||++|.|+|||++.+.++..+ +|++++||.+-.-|+||...+..+.
T Consensus 298 KPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~ti--------kK~clvLcts~VSVeQWkqQfk~ws 369 (776)
T KOG1123|consen 298 KPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTI--------KKSCLVLCTSAVSVEQWKQQFKQWS 369 (776)
T ss_pred CcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeee--------cccEEEEecCccCHHHHHHHHHhhc
Confidence 34556899999999998863 49999999999999987655433 6789999999999999999999887
Q ss_pred C---CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--------cCccccceeEEEEeccccccCCCcH
Q 000607 93 D---LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--------SYFKLNMIKVLILDECHHARGKHQY 161 (1396)
Q Consensus 93 ~---~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--------~~~~l~~i~llI~DEaH~~~~~~~~ 161 (1396)
. -.++.++.+. .+ ..-.++.|+|+||..+..--.+ .++.-..|.++|+||+|-... +.+
T Consensus 370 ti~d~~i~rFTsd~-Ke--------~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA-~MF 439 (776)
T KOG1123|consen 370 TIQDDQICRFTSDA-KE--------RFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPA-KMF 439 (776)
T ss_pred ccCccceEEeeccc-cc--------cCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchH-HHH
Confidence 4 4566677652 11 1223788999999888643222 145567899999999998764 245
Q ss_pred HHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcc--cccCCcceeEe
Q 000607 162 ACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSN--FIPFSTAKFKF 239 (1396)
Q Consensus 162 ~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~--~~~~~~~~~~~ 239 (1396)
++++.-.-+ --.||||||.++.++. |..|--+++.+.|.. +.-+|.+ ++.+..-..
T Consensus 440 RRVlsiv~a----------HcKLGLTATLvREDdK---------I~DLNFLIGPKlYEA-nWmdL~~kGhIA~VqCaE-- 497 (776)
T KOG1123|consen 440 RRVLSIVQA----------HCKLGLTATLVREDDK---------ITDLNFLIGPKLYEA-NWMDLQKKGHIAKVQCAE-- 497 (776)
T ss_pred HHHHHHHHH----------HhhccceeEEeecccc---------ccccceeecchhhhc-cHHHHHhCCceeEEeeee--
Confidence 555443321 1259999999987653 333444444444433 1122211 111111111
Q ss_pred ccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchh
Q 000607 240 YKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFF 319 (1396)
Q Consensus 240 y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~ 319 (1396)
.||.
T Consensus 498 -------------------------------------------------------------VWCp--------------- 501 (776)
T KOG1123|consen 498 -------------------------------------------------------------VWCP--------------- 501 (776)
T ss_pred -------------------------------------------------------------eecC---------------
Confidence 1111
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHH
Q 000607 320 AWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVIT 399 (1396)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~t 399 (1396)
...++.+.|+..-.+.- ..+ . . ..|.--..-+.|-.|.+..+.++|||...+..
T Consensus 502 -------Mt~eFy~eYL~~~t~kr-~lL------y-------v-----MNP~KFraCqfLI~~HE~RgDKiIVFsDnvfA 555 (776)
T KOG1123|consen 502 -------MTPEFYREYLRENTRKR-MLL------Y-------V-----MNPNKFRACQFLIKFHERRGDKIIVFSDNVFA 555 (776)
T ss_pred -------CCHHHHHHHHhhhhhhh-hee------e-------e-----cCcchhHHHHHHHHHHHhcCCeEEEEeccHHH
Confidence 11112222222111000 000 0 0 02222223344444444578999999998877
Q ss_pred HHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC-CeeEEEEecccccccCCCcccEEEEeCCC-C
Q 000607 400 AIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG-LVNVIVATSILEEGLDVQSCNLVIMFDPS-R 477 (1396)
Q Consensus 400 a~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g-~~nvLVaTsvleeGiDIp~~~lVI~fD~p-~ 477 (1396)
....+--|.+ -++.|.+ ++.+|.+++++|+.+ .+|.++-+.|+...||+|.+|++|..... -
T Consensus 556 Lk~YAikl~K----------pfIYG~T------sq~ERm~ILqnFq~n~~vNTIFlSKVgDtSiDLPEAnvLIQISSH~G 619 (776)
T KOG1123|consen 556 LKEYAIKLGK----------PFIYGPT------SQNERMKILQNFQTNPKVNTIFLSKVGDTSIDLPEANVLIQISSHGG 619 (776)
T ss_pred HHHHHHHcCC----------ceEECCC------chhHHHHHHHhcccCCccceEEEeeccCccccCCcccEEEEEccccc
Confidence 6665544443 2678876 899999999999864 58999999999999999999999988664 4
Q ss_pred cHHHHHHhhhcccCCC--------CcEEEEEecCC
Q 000607 478 TVCSFIQSRGRARMQN--------SDYLLMVKSGD 504 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g--------s~~i~lv~~~~ 504 (1396)
|-++-.||.||.-|+. ..++.+|..+.
T Consensus 620 SRRQEAQRLGRILRAKk~~de~fnafFYSLVS~DT 654 (776)
T KOG1123|consen 620 SRRQEAQRLGRILRAKKRNDEEFNAFFYSLVSKDT 654 (776)
T ss_pred chHHHHHHHHHHHHHhhcCccccceeeeeeeecch
Confidence 6889999999986643 25778887654
No 120
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.83 E-value=1.7e-21 Score=190.87 Aligned_cols=113 Identities=35% Similarity=0.535 Sum_probs=90.8
Q ss_pred hhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCC-CCCCCCcc
Q 000607 997 ESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPG-DNSGSYEL 1075 (1396)
Q Consensus 997 erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~-~~~~~~~~ 1075 (1396)
|||||||||||+++++.++|.+||+.++|.||.+|+.+|||.+|+.+|.++||++|++..+|++..|..+. .......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~- 79 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGD- 79 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhcc-
Confidence 89999999999999999999999999999999999999999999999999999999999999988777661 1000000
Q ss_pred CcccccCCcccccccceecccchhhHHHHHHHHHHhhcCC
Q 000607 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGG 1115 (1396)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G 1115 (1396)
.. . ...+....+....|.+||+|||+|||+|+|+|
T Consensus 80 -~~-~---~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 80 -SE-S---SISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp ----C----SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred -cc-c---ccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 00 0 00001114457899999999999999999998
No 121
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.82 E-value=5.4e-19 Score=193.49 Aligned_cols=329 Identities=18% Similarity=0.254 Sum_probs=200.5
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEE
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKY 99 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~ 99 (1396)
-.+-|..++..+.++ ++-|+||||+||++++.+... . .+.+++++.|..+|+..|.+.+.+. .+++..+
T Consensus 21 Ks~LQE~A~~c~VK~k~DVyVsMPTGaGKSLCyQLPaL--~------~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SL 91 (641)
T KOG0352|consen 21 KSRLQEQAINCIVKRKCDVYVSMPTGAGKSLCYQLPAL--V------HGGITIVISPLIALIKDQIDHLKRL-KVPCESL 91 (641)
T ss_pred cChHHHHHHHHHHhccCcEEEeccCCCchhhhhhchHH--H------hCCeEEEehHHHHHHHHHHHHHHhc-CCchhHh
Confidence 467899999999886 699999999999999886432 1 1338999999999999999998874 3333323
Q ss_pred eCCCCcccCCccc----hHHhhccCcEEEecHHHHHH----hHhhcCccccceeEEEEeccccccCC-CcHHH---HHHH
Q 000607 100 WGDMGVDFWDGAT----WKEEMSKHEVLVMTPQILLD----GLRLSYFKLNMIKVLILDECHHARGK-HQYAC---IMTE 167 (1396)
Q Consensus 100 ~G~~~~~~~~~~~----~~~~~~~~~ViV~T~q~L~~----~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~---im~~ 167 (1396)
.+.+... .... ...+-.+..++..||+.... -+.++..+-+.++++|+||||+.... |.++- -+-.
T Consensus 92 NSKlSt~--ER~ri~~DL~~ekp~~K~LYITPE~AAt~~FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~ 169 (641)
T KOG0352|consen 92 NSKLSTV--ERSRIMGDLAKEKPTIKMLYITPEGAATDGFQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGS 169 (641)
T ss_pred cchhhHH--HHHHHHHHHHhcCCceeEEEEchhhhhhhhHHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhh
Confidence 2222111 1111 12222367899999976442 22234445567899999999998843 22221 1111
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCch
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPH 247 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~ 247 (1396)
+++.....| -+.||||... ++.++|..-.. |+..+. .|..-.+..
T Consensus 170 -----LRS~~~~vp-wvALTATA~~--------~VqEDi~~qL~-L~~PVA--------------------iFkTP~FR~ 214 (641)
T KOG0352|consen 170 -----LRSVCPGVP-WVALTATANA--------KVQEDIAFQLK-LRNPVA--------------------IFKTPTFRD 214 (641)
T ss_pred -----HHhhCCCCc-eEEeecccCh--------hHHHHHHHHHh-hcCcHH--------------------hccCcchhh
Confidence 222234444 4688988744 22222221111 111000 011000000
Q ss_pred hhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccc
Q 000607 248 ALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGF 327 (1396)
Q Consensus 248 ~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~ 327 (1396)
.++-. ..+
T Consensus 215 NLFYD--~~~---------------------------------------------------------------------- 222 (641)
T KOG0352|consen 215 NLFYD--NHM---------------------------------------------------------------------- 222 (641)
T ss_pred hhhHH--HHH----------------------------------------------------------------------
Confidence 00000 000
Q ss_pred hHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHH
Q 000607 328 GETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLL 407 (1396)
Q Consensus 328 ~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L 407 (1396)
++++.+-...|..+... .++. ..| .++-...-..++||+|.+|..++.++-.|
T Consensus 223 -----K~~I~D~~~~LaDF~~~----~LG~-----------~~~-------~~~~~K~~~GCGIVYCRTR~~cEq~AI~l 275 (641)
T KOG0352|consen 223 -----KSFITDCLTVLADFSSS----NLGK-----------HEK-------ASQNKKTFTGCGIVYCRTRNECEQVAIML 275 (641)
T ss_pred -----HHHhhhHhHhHHHHHHH----hcCC-----------hhh-------hhcCCCCcCcceEEEeccHHHHHHHHHHh
Confidence 00111111111110000 0000 000 00000123568899999999999999998
Q ss_pred HhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhh
Q 000607 408 SELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRG 487 (1396)
Q Consensus 408 ~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~G 487 (1396)
.. .|+.....|.. +...+|.++-++.-+|++.||+||...+.|+|-|++..||++|.|.|+..|.|-.|
T Consensus 276 ~~-----~Gi~A~AYHAG------LK~~ERTeVQe~WM~~~~PvI~AT~SFGMGVDKp~VRFViHW~~~qn~AgYYQESG 344 (641)
T KOG0352|consen 276 EI-----AGIPAMAYHAG------LKKKERTEVQEKWMNNEIPVIAATVSFGMGVDKPDVRFVIHWSPSQNLAGYYQESG 344 (641)
T ss_pred hh-----cCcchHHHhcc------cccchhHHHHHHHhcCCCCEEEEEeccccccCCcceeEEEecCchhhhHHHHHhcc
Confidence 85 47776666654 68889999999999999999999999999999999999999999999999999999
Q ss_pred cccCCC--CcEEEEEecCCcc
Q 000607 488 RARMQN--SDYLLMVKSGDST 506 (1396)
Q Consensus 488 RA~R~g--s~~i~lv~~~~~~ 506 (1396)
||||.| |.+-+.+.+.|..
T Consensus 345 RAGRDGk~SyCRLYYsR~D~~ 365 (641)
T KOG0352|consen 345 RAGRDGKRSYCRLYYSRQDKN 365 (641)
T ss_pred ccccCCCccceeeeecccchH
Confidence 999998 4444555555443
No 122
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=99.82 E-value=4.8e-18 Score=189.63 Aligned_cols=380 Identities=15% Similarity=0.165 Sum_probs=224.6
Q ss_pred cchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC--eE
Q 000607 21 FARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL--KV 96 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~--~v 96 (1396)
.+-|||.+.++.++++ .+++++++|.|||+.|+.+...+.. .. ..+|+||. .|..-|++.++++++. .+
T Consensus 198 ~LlPFQreGv~faL~RgGR~llADeMGLGKTiQAlaIA~yyra-----Ew-plliVcPA-svrftWa~al~r~lps~~pi 270 (689)
T KOG1000|consen 198 RLLPFQREGVIFALERGGRILLADEMGLGKTIQALAIARYYRA-----EW-PLLIVCPA-SVRFTWAKALNRFLPSIHPI 270 (689)
T ss_pred hhCchhhhhHHHHHhcCCeEEEecccccchHHHHHHHHHHHhh-----cC-cEEEEecH-HHhHHHHHHHHHhcccccce
Confidence 3789999999999984 6999999999999999887665421 12 38999999 7779999999999863 44
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH-HHHHHHHHhhccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA-CIMTEFYHRLLET 175 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~im~~f~~~~~~~ 175 (1396)
.++.+....- ........|.|++++.+..+ +..+.-..+.++||||+|++++...-+ +......
T Consensus 271 ~vv~~~~D~~-------~~~~t~~~v~ivSye~ls~l--~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dll------ 335 (689)
T KOG1000|consen 271 FVVDKSSDPL-------PDVCTSNTVAIVSYEQLSLL--HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLL------ 335 (689)
T ss_pred EEEecccCCc-------cccccCCeEEEEEHHHHHHH--HHHHhcccceEEEEechhhhhccchhhhhhhhhHH------
Confidence 4444432111 11222467999999987643 224445569999999999998643222 1111111
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhc-ccccCCcceeEeccCCCCc--hhhHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLS-NFIPFSTAKFKFYKYDEIP--HALYTH 252 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~-~~~~~~~~~~~~y~~~~~~--~~~~~~ 252 (1396)
...-++++||+||..+... ++..+|..+...+....+ ++. .|+.. ......|+..... .++..-
T Consensus 336 --k~akhvILLSGTPavSRP~----elytqi~avd~tlfp~f~------efa~rYCd~-k~vr~~~Dykg~tnl~EL~~l 402 (689)
T KOG1000|consen 336 --KVAKHVILLSGTPAVSRPS----ELYTQIRAVDHTLFPNFH------EFAIRYCDG-KQVRFCFDYKGCTNLEELAAL 402 (689)
T ss_pred --HHhhheEEecCCcccCCch----hhhhhhhhhcccccccHH------HHHHHhcCc-cccceeeecCCCCCHHHHHHH
Confidence 2345899999999876643 234444444444433221 111 12111 1111223322211 111110
Q ss_pred HHHH--HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHH
Q 000607 253 LADE--LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGET 330 (1396)
Q Consensus 253 l~~~--l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 330 (1396)
+.+. +..+.......| .+- ..+......+..+.....
T Consensus 403 L~k~lMIRRlK~dvL~qL-------------------------------PpK----------rr~Vv~~~~gr~da~~~~ 441 (689)
T KOG1000|consen 403 LFKRLMIRRLKADVLKQL-------------------------------PPK----------RREVVYVSGGRIDARMDD 441 (689)
T ss_pred HHHHHHHHHHHHHHHhhC-------------------------------Ccc----------ceEEEEEcCCccchHHHH
Confidence 1000 011111110000 000 000000000000000000
Q ss_pred HHH--------HHHHH-HHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhh---hcCCCCeeEEEEechHH
Q 000607 331 IIK--------KFGSD-ASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLE---YRGVEDIRCIIFVERVI 398 (1396)
Q Consensus 331 ~~~--------~~l~~-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~---~~~~~~~k~IIFv~~r~ 398 (1396)
+.. +.++. ....+-.+. . .-..|+....+.|.. +...+..|.+||+....
T Consensus 442 lv~~a~~~t~~~~~e~~~~~l~l~y~-~-----------------tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~~ 503 (689)
T KOG1000|consen 442 LVKAAADYTKVNSMERKHESLLLFYS-L-----------------TGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQI 503 (689)
T ss_pred HHHHhhhcchhhhhhhhhHHHHHHHH-H-----------------hcccccHHHHHHHHhCcccccCCCceEEEEehhHH
Confidence 000 00000 000000000 0 003466666666655 24567889999999999
Q ss_pred HHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC-eeE-EEEecccccccCCCcccEEEEeCCC
Q 000607 399 TAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL-VNV-IVATSILEEGLDVQSCNLVIMFDPS 476 (1396)
Q Consensus 399 ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~-~nv-LVaTsvleeGiDIp~~~lVI~fD~p 476 (1396)
..+.|...+.+ +++....+.|++ +..+|....+.|+..+ +.| +++--.++.|+++.+.++||+..++
T Consensus 504 vLd~Iq~~~~~-----r~vg~IRIDGst------~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~ 572 (689)
T KOG1000|consen 504 VLDTIQVEVNK-----RKVGSIRIDGST------PSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELH 572 (689)
T ss_pred HHHHHHHHHHH-----cCCCeEEecCCC------CchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEec
Confidence 99999999986 477788899986 7789999999999754 444 4455678999999999999999999
Q ss_pred CcHHHHHHhhhcccCCCC----cEEEEEecCCc
Q 000607 477 RTVCSFIQSRGRARMQNS----DYLLMVKSGDS 505 (1396)
Q Consensus 477 ~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~ 505 (1396)
||+.-.+|.-.||+|.|+ .++.++..+..
T Consensus 573 wnPgvLlQAEDRaHRiGQkssV~v~ylvAKgT~ 605 (689)
T KOG1000|consen 573 WNPGVLLQAEDRAHRIGQKSSVFVQYLVAKGTA 605 (689)
T ss_pred CCCceEEechhhhhhccccceeeEEEEEecCch
Confidence 999999999999999995 34556655543
No 123
>PF00636 Ribonuclease_3: Ribonuclease III domain; InterPro: IPR000999 Prokaryotic ribonuclease III (3.1.26.3 from EC) (gene rnc) [] is an enzyme that digests double-stranded RNA. It is involved in the processing of ribosomal RNA precursors and of some mRNAs. RNase III is evolutionary related to a number of proteins including []: Saccharomyces cerevisiae (Baker's yeast) protein pac1, a ribonuclease that probably inhibits mating and meiosis by degrading a specific mRNA required for sexual development yeast ribonuclease III (gene RNT1), a dsRNA-specific nuclease that cleaves eukaryotic preribosomal RNA at various sites Caenorhabditis elegans hypothetical protein F26E4.13 Paramecium bursaria Chlorella virus 1 (PBCV-1) 1 protein A464R Synechocystis sp. (strain PCC 6803) hypothetical protein slr0346 yeast hypothetical protein SpAC8A4.08c, a protein with a N-terminal helicase domain and a C-terminal RNase III domain C. elegans hypothetical protein K12H4.8, a protein with the same structure as SpAC8A4.08c ; GO: 0003723 RNA binding, 0004525 ribonuclease III activity, 0006396 RNA processing; PDB: 2GSL_A 2NUE_B 1YYO_A 2NUF_A 1YZ9_A 1JFZ_A 1YYW_C 1RC5_B 1YYK_B 1RC7_A ....
Probab=99.82 E-value=6.1e-21 Score=186.85 Aligned_cols=112 Identities=41% Similarity=0.634 Sum_probs=88.3
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
|||||||||||+++|+.|||.+||+.+++.||.+|+.+|||.+|+.+|+++||++|++..+......+..+.+.......
T Consensus 1 ErLefLGDavL~~~v~~~l~~~~p~~~~~~L~~~r~~~vsn~~L~~~a~~~gl~~~l~~~~~~~~~~~~~~~~~~~~~~~ 80 (114)
T PF00636_consen 1 ERLEFLGDAVLKLLVSEYLFEKYPNLNEGQLTKLRSALVSNKFLARLAVKLGLHKYLRQEPFEIQRWIKPFNEDLNNGDS 80 (114)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTTSSHHHHHHHHHHHHSHHHHHHHHHHTTHGCTCBHHHHHHHHHHHCHHCC------
T ss_pred CcHhHhHHHHHHHHHHHHHHHHCCCCChhHHHHHHHHHhCHHHHHHHHHHhCchHhhhccchhHHHHHHHHHHHHHhccc
Confidence 79999999999999999999999999999999999999999999999999999999998776665554442222111110
Q ss_pred -C-CCCCcccccCCChhhHHHHHHHhhheeeecC
Q 000607 1267 -G-STFGWESVTSFPKALGDIIESLAGAIFVDSG 1298 (1396)
Q Consensus 1267 -~-~~~~~~~~~~~~k~l~d~~EA~iGAi~~d~g 1298 (1396)
. ...........+|++||+|||+|||||+|+|
T Consensus 81 ~~~~~~~~~~~~~~~k~laD~~EAliGAiyld~G 114 (114)
T PF00636_consen 81 ESSISYDPKNQVLPPKVLADVFEALIGAIYLDSG 114 (114)
T ss_dssp -C-SSS--SSSSHHHHHHHHHHHHHHHHHHHHTT
T ss_pred ccccCCCccccCCccHHHHHHHHHHHHHHHHhcC
Confidence 0 0011112345789999999999999999998
No 124
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=99.82 E-value=2.7e-17 Score=182.99 Aligned_cols=143 Identities=15% Similarity=0.187 Sum_probs=115.8
Q ss_pred ccHHHHHHHHHHhhhc-CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc
Q 000607 368 LTEKIVCLIESLLEYR-GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~-~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~ 446 (1396)
.|.|+++|.+-|.-.. .+...+.|||.+.-...+.+...|.+ .|+.|.-++|+ |++..|..+++.|.+
T Consensus 618 sSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~k-----aGfscVkL~Gs------Ms~~ardatik~F~n 686 (791)
T KOG1002|consen 618 SSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLGK-----AGFSCVKLVGS------MSPAARDATIKYFKN 686 (791)
T ss_pred chhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhhc-----cCceEEEeccC------CChHHHHHHHHHhcc
Confidence 4789999998876642 34567899999999999999988886 49999999997 899999999999987
Q ss_pred C-Cee-EEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcchHHHHHHHHHHHHH
Q 000607 447 G-LVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDSTTQSRLENYLASGNK 520 (1396)
Q Consensus 447 g-~~n-vLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~~~~~i~~~~~~e~~ 520 (1396)
. +|. .|++-.+++..+|+..++.|...|+.||+..-.|+..|.+|.|+ +++.|+-+. ...++|-++++....
T Consensus 687 d~~c~vfLvSLkAGGVALNLteASqVFmmDPWWNpaVe~Qa~DRiHRIGQ~rPvkvvrf~iEn--siE~kIieLQeKKa~ 764 (791)
T KOG1002|consen 687 DIDCRVFLVSLKAGGVALNLTEASQVFMMDPWWNPAVEWQAQDRIHRIGQYRPVKVVRFCIEN--SIEEKIIELQEKKAN 764 (791)
T ss_pred CCCeEEEEEEeccCceEeeechhceeEeecccccHHHHhhhhhhHHhhcCccceeEEEeehhc--cHHHHHHHHHHHHhh
Confidence 5 455 46677889999999999999999999999999999999999996 566665544 344555555555555
Q ss_pred HHH
Q 000607 521 MRK 523 (1396)
Q Consensus 521 m~~ 523 (1396)
|-.
T Consensus 765 mih 767 (791)
T KOG1002|consen 765 MIH 767 (791)
T ss_pred hhh
Confidence 543
No 125
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=1.1e-17 Score=207.07 Aligned_cols=120 Identities=23% Similarity=0.221 Sum_probs=101.3
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++.+.+. ...+..+||||+++..++.|+++|+. .+++...++|.. .++++..+.+.|+.|
T Consensus 426 ~~~k~~av~~~i~~~-~~~g~PVLVgt~Sie~sE~ls~~L~~-----~gi~h~vLnak~------~q~Ea~iia~Ag~~G 493 (896)
T PRK13104 426 QADKFQAIIEDVREC-GVRKQPVLVGTVSIEASEFLSQLLKK-----ENIKHQVLNAKF------HEKEAQIIAEAGRPG 493 (896)
T ss_pred HHHHHHHHHHHHHHH-HhCCCCEEEEeCcHHHHHHHHHHHHH-----cCCCeEeecCCC------ChHHHHHHHhCCCCC
Confidence 356888888877664 35788999999999999999999997 489999999984 889999999999999
Q ss_pred CeeEEEEecccccccCCCcc--------------------------------------cEEEEeCCCCcHHHHHHhhhcc
Q 000607 448 LVNVIVATSILEEGLDVQSC--------------------------------------NLVIMFDPSRTVCSFIQSRGRA 489 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRA 489 (1396)
.|+|||+++++|+||.-- =+||--..+.|.+---|-+|||
T Consensus 494 --~VtIATNmAGRGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhesrRID~QLrGRa 571 (896)
T PRK13104 494 --AVTIATNMAGRGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHESRRIDNQLRGRA 571 (896)
T ss_pred --cEEEeccCccCCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCchHHHHHHhcccc
Confidence 499999999999999632 2688888999999999999999
Q ss_pred cCCC--CcEEEEEe
Q 000607 490 RMQN--SDYLLMVK 501 (1396)
Q Consensus 490 ~R~g--s~~i~lv~ 501 (1396)
||.| |..-.+++
T Consensus 572 GRQGDPGss~f~lS 585 (896)
T PRK13104 572 GRQGDPGSSRFYLS 585 (896)
T ss_pred ccCCCCCceEEEEE
Confidence 9998 44444444
No 126
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=5.2e-18 Score=209.31 Aligned_cols=122 Identities=20% Similarity=0.219 Sum_probs=103.3
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|...+++.+.... ..+..+||||+++..++.|++.|.+ .+++...++|.. ..+++..+.++++.|
T Consensus 422 ~~~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~-----~gi~~~~Lna~~------~~~Ea~ii~~ag~~g 489 (796)
T PRK12906 422 LDSKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDE-----AGIPHAVLNAKN------HAKEAEIIMNAGQRG 489 (796)
T ss_pred HHHHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHH-----CCCCeeEecCCc------HHHHHHHHHhcCCCc
Confidence 3568888888887642 4788999999999999999999997 488999999974 666666666666666
Q ss_pred CeeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 448 LVNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
. |+|||+++++|+||+ ++. +||+++.|.|.+.|.|++||+||.| |....+++-+
T Consensus 490 ~--VtIATnmAGRGtDI~l~~~V~~~GGLhVI~te~pes~ri~~Ql~GRtGRqG~~G~s~~~~sle 553 (796)
T PRK12906 490 A--VTIATNMAGRGTDIKLGPGVKELGGLAVIGTERHESRRIDNQLRGRSGRQGDPGSSRFYLSLE 553 (796)
T ss_pred e--EEEEeccccCCCCCCCCcchhhhCCcEEEeeecCCcHHHHHHHhhhhccCCCCcceEEEEecc
Confidence 5 999999999999995 788 9999999999999999999999998 5667777644
No 127
>KOG1817 consensus Ribonuclease [RNA processing and modification]
Probab=99.81 E-value=5.2e-20 Score=201.46 Aligned_cols=122 Identities=29% Similarity=0.386 Sum_probs=106.6
Q ss_pred HHHHHHhcccCccc----cCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCccccc
Q 000607 979 IKVLEAITTKKCQE----DFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIR 1054 (1396)
Q Consensus 979 ~~l~~AlT~~s~~~----~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~ 1054 (1396)
.++.+|+|..+... ..+||||||||||||.+++|.++|.+||+.+||.||.+|+.+|+|.+-+++|..+|+++|+.
T Consensus 290 rlla~aft~rs~~~n~Lt~gHNqRLEFLGDSilqlv~T~ily~kFPdhhEGhLSlLRssLVsNetqakva~~lgf~e~li 369 (533)
T KOG1817|consen 290 RLLARAFTLRSIPFNHLTLGHNQRLEFLGDSILQLVMTEILYRKFPDHHEGHLSLLRSSLVSNETQAKVADDLGFHEYLI 369 (533)
T ss_pred HHHHHHhhccCCCchhhhhhhhHHHHHhHHHHHHHHHHHHHHHhCCccccchHHHHHHHHhccHHHHHHHHHhCCchhhh
Confidence 78889999998762 23899999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhcCcc
Q 000607 1055 TESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRIGIK 1129 (1396)
Q Consensus 1055 ~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l~~~ 1129 (1396)
+ +|+++ ..+..+.|.+||+|||+|||.|+|+|++.+.+|++.+-.+
T Consensus 370 ~-n~~~k----------------------------~~~~lk~K~~ADlfEAfiGaLyvD~~le~~~qf~~~l~~P 415 (533)
T KOG1817|consen 370 T-NFDLK----------------------------DFQNLKLKDYADLFEAFIGALYVDKGLEYCRQFLRVLFFP 415 (533)
T ss_pred h-Ccchh----------------------------hhhhhhHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHhhH
Confidence 3 11111 1223678999999999999999999999999999887533
No 128
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.80 E-value=1e-18 Score=218.31 Aligned_cols=153 Identities=20% Similarity=0.148 Sum_probs=120.1
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC---
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL--- 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~--- 94 (1396)
.+.|-++|++++..+.++ +++|++|||+|||.+|-.+|..-.. .+.++++..|.++|.+|.+..+...++-
T Consensus 117 ~F~LD~fQ~~a~~~Ler~esVlV~ApTssGKTvVaeyAi~~al~-----~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 117 PFELDPFQQEAIAILERGESVLVCAPTSSGKTVVAEYAIALALR-----DGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred CCCcCHHHHHHHHHHhCCCcEEEEccCCCCcchHHHHHHHHHHH-----cCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 345899999999888887 7999999999999999987764322 3556999999999999999999876652
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhcc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~ 174 (1396)
.+++++|+..++. ++.++|||.++|.+++.++-..+.++..|||||+|-+.+.. ++..++..-
T Consensus 192 ~vGL~TGDv~IN~-----------~A~clvMTTEILRnMlyrg~~~~~~i~~ViFDEvHyi~D~e------RG~VWEE~I 254 (1041)
T COG4581 192 MVGLMTGDVSINP-----------DAPCLVMTTEILRNMLYRGSESLRDIEWVVFDEVHYIGDRE------RGVVWEEVI 254 (1041)
T ss_pred hccceecceeeCC-----------CCceEEeeHHHHHHHhccCcccccccceEEEEeeeeccccc------cchhHHHHH
Confidence 4799999876653 68999999999999999998888999999999999988642 111111111
Q ss_pred CCCCCCCeEEEEeccCCCC
Q 000607 175 TGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~ 193 (1396)
....+.-++++||||..+.
T Consensus 255 i~lP~~v~~v~LSATv~N~ 273 (1041)
T COG4581 255 ILLPDHVRFVFLSATVPNA 273 (1041)
T ss_pred HhcCCCCcEEEEeCCCCCH
Confidence 1123445799999999774
No 129
>COG4889 Predicted helicase [General function prediction only]
Probab=99.79 E-value=3.1e-19 Score=209.45 Aligned_cols=175 Identities=19% Similarity=0.193 Sum_probs=119.4
Q ss_pred ccccccCCCcccchHHHHHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 10 TTEEVSADTLPFARNYQLEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 10 ~~~~~~~~~~~~~r~yQ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
..++.+..-...||+||+++++.++++ +.=+.|..|+|||++++-+...++ ..++|||||+.+|..|.
T Consensus 150 ~~~nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala-------~~~iL~LvPSIsLLsQT 222 (1518)
T COG4889 150 LQDNLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALA-------AARILFLVPSISLLSQT 222 (1518)
T ss_pred cccccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHh-------hhheEeecchHHHHHHH
Confidence 344455555667999999999999984 377888999999999987776653 36799999999999998
Q ss_pred HHHHHHhc--CCeEEEEeCCCCcccCCcc-------------------chHHhh--ccCcEEEecHHHHHHhHhhcCccc
Q 000607 85 AEAIKMHT--DLKVGKYWGDMGVDFWDGA-------------------TWKEEM--SKHEVLVMTPQILLDGLRLSYFKL 141 (1396)
Q Consensus 85 ~~~i~~~~--~~~v~~~~G~~~~~~~~~~-------------------~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l 141 (1396)
.++..... +++...++++..+..-... .|...- .+--||++|||.+...-.....-+
T Consensus 223 lrew~~~~~l~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~eAQe~G~ 302 (1518)
T COG4889 223 LREWTAQKELDFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKEAQEAGL 302 (1518)
T ss_pred HHHHhhccCccceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHHHHHcCC
Confidence 88887654 6677777777554321111 121111 145699999999987766555667
Q ss_pred cceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 142 NMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 142 ~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..++|||.||||+..+-+-...--..|... .....-+..+.|-|||||-.
T Consensus 303 ~~fDliicDEAHRTtGa~~a~dd~saFt~v-Hs~~niKa~kRlYmTATPki 352 (1518)
T COG4889 303 DEFDLIICDEAHRTTGATLAGDDKSAFTRV-HSDQNIKAAKRLYMTATPKI 352 (1518)
T ss_pred CCccEEEecchhccccceecccCcccceee-cCcchhHHHHhhhcccCchh
Confidence 899999999999998642211111222211 00011123568899999964
No 130
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=99.79 E-value=2.7e-17 Score=189.57 Aligned_cols=443 Identities=18% Similarity=0.211 Sum_probs=249.9
Q ss_pred ccchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-C
Q 000607 20 PFARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-D 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~ 93 (1396)
-.+.+||...+.+..+ | |.|+++++|.|||..++.++.++++.-.-. | ..|+++|...| ..|+++|.+|+ .
T Consensus 566 ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIw-G-PFLVVtpaStL-~NWaqEisrFlP~ 642 (1185)
T KOG0388|consen 566 CTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIW-G-PFLVVTPASTL-HNWAQEISRFLPS 642 (1185)
T ss_pred hhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCC-C-ceEEeehHHHH-hHHHHHHHHhCcc
Confidence 3479999999998775 5 999999999999999999999888743322 3 37899999766 88999999998 5
Q ss_pred CeEEEEeCCCCc-----ccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHH-HHHHH
Q 000607 94 LKVGKYWGDMGV-----DFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYA-CIMTE 167 (1396)
Q Consensus 94 ~~v~~~~G~~~~-----~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~-~im~~ 167 (1396)
+++.-|.|+.+. .+|.....-......+|+|+|||.+... ..++.--.|.++|+|||+.++...+-+ +-+-.
T Consensus 643 ~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD--eky~qkvKWQYMILDEAQAIKSSsS~RWKtLLs 720 (1185)
T KOG0388|consen 643 FKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD--EKYLQKVKWQYMILDEAQAIKSSSSSRWKTLLS 720 (1185)
T ss_pred ceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech--HHHHHhhhhhheehhHHHHhhhhhhhHHHHHhh
Confidence 899999998542 3555544444566899999999987632 234444579999999999988643211 11122
Q ss_pred HHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEe-ccChhhhcccccCCcceeEeccCCCCc
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~-~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
| +....|+||+||+.+. +.+|.++|+-..-+ .....++..+...-.+..-.-.. .+.
T Consensus 721 F----------~cRNRLLLTGTPIQNs-----------MqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~-tln 778 (1185)
T KOG0388|consen 721 F----------KCRNRLLLTGTPIQNS-----------MQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNT-TLN 778 (1185)
T ss_pred h----------hccceeeecCCccchH-----------HHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcC-CcC
Confidence 2 2345799999999864 44455555432221 11223333332221111100000 011
Q ss_pred hhhHHHHHHHHHHHHHHHHh---------hhhh---h----chhhH--HHH-HHHHH------------HHHHHHH--HH
Q 000607 247 HALYTHLADELAMIELKHTR---------SLEN---L----DLNEA--QAE-LIRKK------------VSKINST--LL 293 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~---------~l~~---~----~~~~~--~~~-~~~~~------------~~~~~~~--~~ 293 (1396)
.. -.+.|..+.+++.. .|-. . ++..+ .+. ..+.. +++.++. ..
T Consensus 779 eq----qL~RLH~ILKPFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLF 854 (1185)
T KOG0388|consen 779 EQ----QLQRLHAILKPFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLF 854 (1185)
T ss_pred HH----HHHHHHHHHhHHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHH
Confidence 11 11112222222211 1100 0 00000 000 00111 1111100 00
Q ss_pred -----------HHHHhHHH---------------HHHHHHHHHh-----------------hccccchh---------hh
Q 000607 294 -----------YCLSELGV---------------WLALKAAETI-----------------SCYESDFF---------AW 321 (1396)
Q Consensus 294 -----------~~~~~lg~---------------~~a~~~~~~~-----------------~~~~~~~~---------~~ 321 (1396)
.+.+.+|. ..+..+.+.. -..+..+. ..
T Consensus 855 er~e~~s~L~~~V~~nl~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~ 934 (1185)
T KOG0388|consen 855 ERLEPRSGLSLEVSDNLGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKY 934 (1185)
T ss_pred hhcCCcceeEEEcccCHHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeecc
Confidence 00001110 0000000000 00000000 00
Q ss_pred hh-cccchH----HHHH--------------HHHHHHHHHHHHh----ccCC--CccccC--CCCcc------------c
Q 000607 322 EQ-LDGFGE----TIIK--------------KFGSDASQALVTY----VPSG--AEWSIG--DDSKF------------N 362 (1396)
Q Consensus 322 ~~-~~~~~~----~~~~--------------~~l~~~~~~l~~~----~~~~--~~~~~~--~~~~~------------~ 362 (1396)
|. .+...+ ...+ +.+......+..+ .+.. +...+. .++++ .
T Consensus 935 G~~~~~n~e~~~Kavtr~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~ 1014 (1185)
T KOG0388|consen 935 GGYVFRNVEEAGKAVTRNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTT 1014 (1185)
T ss_pred CCcccccHHHHHHHHHHHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccc
Confidence 00 000111 1111 1111100111110 0000 000000 00000 0
Q ss_pred CC------CCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHH
Q 000607 363 LD------SGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKK 436 (1396)
Q Consensus 363 ~~------~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~ 436 (1396)
+. .-..|.|+..|-++|...+ ..+.|+++|.+--.+...+.++|.- .++....+.|++ ...+
T Consensus 1015 i~~Ppm~~FitdSgKL~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~y-----r~Y~ylRLDGSs------k~~d 1082 (1185)
T KOG0388|consen 1015 IYVPPMNTFITDSGKLVVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVY-----RGYTYLRLDGSS------KASD 1082 (1185)
T ss_pred eecCcHHhhhccccceeeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHh-----hccceEEecCcc------hhhH
Confidence 00 0113678888888888764 5789999999988888888888874 588888999985 7789
Q ss_pred HHHHHHHHhcCCe-eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCc
Q 000607 437 QNEIVEEFRRGLV-NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDS 505 (1396)
Q Consensus 437 r~~~l~~Fr~g~~-nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~ 505 (1396)
|.+++.+|+..++ -.|++|.+++-|||+.+++.||+||..||+..-.|.+.||+|-|+ .++-++.+|..
T Consensus 1083 Rrd~vrDwQ~sdiFvFLLSTRAGGLGINLTAADTViFYdSDWNPT~D~QAMDRAHRLGQTrdvtvyrl~~rgTv 1156 (1185)
T KOG0388|consen 1083 RRDVVRDWQASDIFVFLLSTRAGGLGINLTAADTVIFYDSDWNPTADQQAMDRAHRLGQTRDVTVYRLITRGTV 1156 (1185)
T ss_pred HHHHHhhccCCceEEEEEecccCcccccccccceEEEecCCCCcchhhHHHHHHHhccCccceeeeeecccccH
Confidence 9999999998765 568899999999999999999999999999999999999999985 46667776643
No 131
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.79 E-value=6.4e-17 Score=200.51 Aligned_cols=404 Identities=15% Similarity=0.101 Sum_probs=222.6
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|++.|.-..-.. ...-|..|.||+|||++|.+++.- ..+ .++.+-+++||..|+.|.++.+.. ++|+++
T Consensus 80 ~~~~dvQlig~l~L-~~G~Iaem~TGeGKTLva~lpa~l--~aL---~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv 153 (830)
T PRK12904 80 MRHFDVQLIGGMVL-HEGKIAEMKTGEGKTLVATLPAYL--NAL---TGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSV 153 (830)
T ss_pred CCCCccHHHhhHHh-cCCchhhhhcCCCcHHHHHHHHHH--HHH---cCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeE
Confidence 34666777665433 344699999999999999986641 112 344588999999999998888776 458999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhcC------ccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLSY------FKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~~------~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
+.+.|+++... +...-.++|+++|+..| .+.|+... .....+.++|+|||+.+.=+
T Consensus 154 ~~i~~~~~~~e------r~~~y~~dI~ygT~~elgfDyLrd~~~~~~~~~~~r~~~~aIvDEaDsiLID----------- 216 (830)
T PRK12904 154 GVILSGMSPEE------RREAYAADITYGTNNEFGFDYLRDNMVFSLEERVQRGLNYAIVDEVDSILID----------- 216 (830)
T ss_pred EEEcCCCCHHH------HHHhcCCCeEEECCcchhhhhhhcccccchhhhcccccceEEEechhhheec-----------
Confidence 99999865431 22223589999999999 78887654 23677999999999988632
Q ss_pred HhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCe-EEeccCh-----------hhhcccccCCccee
Q 000607 170 HRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCASE-----------SVLSNFIPFSTAKF 237 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~-i~~~~~~-----------~~l~~~~~~~~~~~ 237 (1396)
....|-| +|+.+.... +....+..+...|... -|.+... ..+..+... .
T Consensus 217 -------eArtpLi--iSg~~~~~~------~~y~~~~~~v~~l~~~~dy~vde~~~~v~lte~G~~~~e~~~~~----~ 277 (830)
T PRK12904 217 -------EARTPLI--ISGPAEDSS------ELYKRANKIVPTLEKEGDYTVDEKSRTVGLTEEGIEKAEKLLGI----E 277 (830)
T ss_pred -------cCCCcee--eECCCCccc------HHHHHHHHHHHhcCCCCCeEEEcCCCeeeECHHHHHHHHHHhCC----c
Confidence 1234533 344332111 4555666666666321 1221000 000000000 0
Q ss_pred EeccCCCCchhhHHHHHHHHHHHH--HHHHhhhhh-h------chhhHHHHHHHHHHHHHHHHHHHHHHhHHHH--HHHH
Q 000607 238 KFYKYDEIPHALYTHLADELAMIE--LKHTRSLEN-L------DLNEAQAELIRKKVSKINSTLLYCLSELGVW--LALK 306 (1396)
Q Consensus 238 ~~y~~~~~~~~~~~~l~~~l~~l~--~~~~~~l~~-~------~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~--~a~~ 306 (1396)
-.|+... .+....+...|.... .+-..++.. . .++.+.. . -..| +-+.
T Consensus 278 ~ly~~~~--~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivDe~TGR~~--~-----------------gr~ws~GLHQ 336 (830)
T PRK12904 278 NLYDPEN--IALVHHLNQALRAHELFKRDVDYIVKDGEVVIVDEFTGRLM--P-----------------GRRYSDGLHQ 336 (830)
T ss_pred cccChhh--hHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEECCCCccC--C-----------------CCccchHHHH
Confidence 0011000 000000011110000 000000000 0 0000000 0 0000 0011
Q ss_pred HHHHhhccccchhhhhhcccchHHHHHHHH---------HHHHHHHHHhccCCCccccCCCCc---ccCC---CCCccHH
Q 000607 307 AAETISCYESDFFAWEQLDGFGETIIKKFG---------SDASQALVTYVPSGAEWSIGDDSK---FNLD---SGLLTEK 371 (1396)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~l~~~~~~~~~~~~~~~~~---~~~~---~~~~s~K 371 (1396)
+.+.-..............-..+.+.+.|- ......+...+.-+. ..++.+.+ .+.. ......|
T Consensus 337 aiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~v-v~IPtnkp~~r~d~~d~i~~t~~~K 415 (830)
T PRK12904 337 AIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDV-VVIPTNRPMIRIDHPDLIYKTEKEK 415 (830)
T ss_pred HHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCE-EEcCCCCCeeeeeCCCeEEECHHHH
Confidence 111100000000000000000011111110 011222333221110 11111111 1111 1223578
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeE
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNV 451 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nv 451 (1396)
...+++.+.+.. ..+.++||||+++..++.|++.|.. .+++...++|. +.+|+..+.+|+.|...|
T Consensus 416 ~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~-----~gi~~~vLnak--------q~eREa~Iia~Ag~~g~V 481 (830)
T PRK12904 416 FDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKK-----AGIPHNVLNAK--------NHEREAEIIAQAGRPGAV 481 (830)
T ss_pred HHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHH-----CCCceEeccCc--------hHHHHHHHHHhcCCCceE
Confidence 888988887632 4678899999999999999999997 48899999884 468899999999999999
Q ss_pred EEEecccccccCCCcc--------------------------------------cEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 452 IVATSILEEGLDVQSC--------------------------------------NLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 452 LVaTsvleeGiDIp~~--------------------------------------~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+|||+++++|+||+-- =+||--..+.|.+---|-+|||||.|
T Consensus 482 tIATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhesrRid~QlrGRagRQG 561 (830)
T PRK12904 482 TIATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHESRRIDNQLRGRSGRQG 561 (830)
T ss_pred EEecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCchHHHHHHhhcccccCC
Confidence 9999999999999764 26888889999999999999999998
Q ss_pred --CcEEEEEe
Q 000607 494 --SDYLLMVK 501 (1396)
Q Consensus 494 --s~~i~lv~ 501 (1396)
|..-.+++
T Consensus 562 dpGss~f~lS 571 (830)
T PRK12904 562 DPGSSRFYLS 571 (830)
T ss_pred CCCceeEEEE
Confidence 44445554
No 132
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.77 E-value=2.8e-18 Score=187.75 Aligned_cols=311 Identities=18% Similarity=0.188 Sum_probs=195.4
Q ss_pred CCcEEEEEeCCcccHHHHHHHHHH---hcC---CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCcc
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKM---HTD---LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFK 140 (1396)
Q Consensus 67 ~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~---~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~ 140 (1396)
+....+|+-|+++|++|....|++ ++. ++..++.|+... ..+-....++.+|+|.||+++++.+..+.+.
T Consensus 285 Nap~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~----r~Q~~ql~~g~~ivvGtpgRl~~~is~g~~~ 360 (725)
T KOG0349|consen 285 NAPEAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLK----RTQCKQLKDGTHIVVGTPGRLLQPISKGLVT 360 (725)
T ss_pred CCcceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHh----HHHHHHhhcCceeeecCchhhhhhhhcccee
Confidence 456799999999999998875554 442 233345554221 2334555568999999999999999999999
Q ss_pred ccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCC--CCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEE
Q 000607 141 LNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD--SNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVY 218 (1396)
Q Consensus 141 l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~--~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~ 218 (1396)
+.+..++|+|||+-+.+. -|...+.+|... +.... ..+++....|||...-.... .-|..|+-...
T Consensus 361 lt~crFlvlDead~lL~q-gy~d~I~r~h~q-ip~~tsdg~rlq~~vCsatlh~feVkk----------~~ervmhfptw 428 (725)
T KOG0349|consen 361 LTHCRFLVLDEADLLLGQ-GYDDKIYRFHGQ-IPHMTSDGFRLQSPVCSATLHIFEVKK----------VGERVMHFPTW 428 (725)
T ss_pred eeeeEEEEecchhhhhhc-ccHHHHHHHhcc-chhhhcCCcccccceeeeEEeEEEeee----------hhhhhccCcee
Confidence 999999999999999874 455555555432 22111 24566777888864321111 01222222111
Q ss_pred e-ccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHH
Q 000607 219 T-CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLS 297 (1396)
Q Consensus 219 ~-~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1396)
. .+-++.+..-++ .......+ .
T Consensus 429 VdLkgeD~vpetvH---hvv~lv~p------------------------------------------------------~ 451 (725)
T KOG0349|consen 429 VDLKGEDLVPETVH---HVVKLVCP------------------------------------------------------S 451 (725)
T ss_pred Eecccccccchhhc---cceeecCC------------------------------------------------------c
Confidence 1 000000000000 00000000 0
Q ss_pred hHHHHHHHHHHHHhhcc---ccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHH
Q 000607 298 ELGVWLALKAAETISCY---ESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVC 374 (1396)
Q Consensus 298 ~lg~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~ 374 (1396)
.-|.||..+ +.+.-. ..++. ..+...+ ...|..+
T Consensus 452 ~d~sw~~lr--~~i~td~vh~kdn~----------------------------------~pg~~Sp-----e~~s~a~-- 488 (725)
T KOG0349|consen 452 VDGSWCDLR--QFIETDKVHTKDNL----------------------------------LPGQVSP-----ENPSSAT-- 488 (725)
T ss_pred cCccHHHHh--hhhccCCccccccc----------------------------------ccccCCC-----CChhhhh--
Confidence 011222210 000000 00000 0011111 1112222
Q ss_pred HHHHHhh-h-----cCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 375 LIESLLE-Y-----RGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 375 L~~~L~~-~-----~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
.+|+. | +...-.++||||.++..++-|.+++.+... ..+.|.++||+. .+.+|.+.++.|+.++
T Consensus 489 --kilkgEy~v~ai~~h~mdkaiifcrtk~dcDnLer~~~qkgg--~~~scvclhgDr------kP~Erk~nle~Fkk~d 558 (725)
T KOG0349|consen 489 --KILKGEYGVVAIRRHAMDKAIIFCRTKQDCDNLERMMNQKGG--KHYSCVCLHGDR------KPDERKANLESFKKFD 558 (725)
T ss_pred --HHhcCchhhhhhhhhccCceEEEEeccccchHHHHHHHHcCC--ccceeEEEecCC------ChhHHHHHHHhhhhcC
Confidence 22221 1 224567999999999999999999997522 368999999995 7899999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
++.||||+|+++||||...-.+|+.-+|.....|+||+||+||+. +-.|.++...
T Consensus 559 vkflictdvaargldi~g~p~~invtlpd~k~nyvhrigrvgraermglaislvat~ 615 (725)
T KOG0349|consen 559 VKFLICTDVAARGLDITGLPFMINVTLPDDKTNYVHRIGRVGRAERMGLAISLVATV 615 (725)
T ss_pred eEEEEEehhhhccccccCCceEEEEecCcccchhhhhhhccchhhhcceeEEEeecc
Confidence 999999999999999999999999999999999999999999987 6777777633
No 133
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.77 E-value=9.3e-18 Score=200.29 Aligned_cols=152 Identities=19% Similarity=0.163 Sum_probs=116.8
Q ss_pred ccchHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+.+-.+|++++....+|+ +.|++.|.+|||++|-.+|.- ++ ..+.|+++-.|-++|-+|-++.|+.-++ .+++
T Consensus 296 FelD~FQk~Ai~~lerg~SVFVAAHTSAGKTvVAEYAial-aq----~h~TR~iYTSPIKALSNQKfRDFk~tF~-DvgL 369 (1248)
T KOG0947|consen 296 FELDTFQKEAIYHLERGDSVFVAAHTSAGKTVVAEYAIAL-AQ----KHMTRTIYTSPIKALSNQKFRDFKETFG-DVGL 369 (1248)
T ss_pred CCccHHHHHHHHHHHcCCeEEEEecCCCCcchHHHHHHHH-HH----hhccceEecchhhhhccchHHHHHHhcc-ccce
Confidence 347789999999999995 889999999999999887652 22 2467899999999999999999997654 3558
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
++|+..+. ..+..+|||.++|.++|-+|---+.++..+||||+|-+.+-. ++..++..-.-..
T Consensus 370 lTGDvqin-----------PeAsCLIMTTEILRsMLYrgadliRDvE~VIFDEVHYiND~e------RGvVWEEViIMlP 432 (1248)
T KOG0947|consen 370 LTGDVQIN-----------PEASCLIMTTEILRSMLYRGADLIRDVEFVIFDEVHYINDVE------RGVVWEEVIIMLP 432 (1248)
T ss_pred eecceeeC-----------CCcceEeehHHHHHHHHhcccchhhccceEEEeeeeeccccc------ccccceeeeeecc
Confidence 99986554 268899999999999999887667889999999999886531 1222111111123
Q ss_pred CCCeEEEEeccCCCCC
Q 000607 179 NLPRIFGMTASPIKSK 194 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~ 194 (1396)
+.-.+++||||..+..
T Consensus 433 ~HV~~IlLSATVPN~~ 448 (1248)
T KOG0947|consen 433 RHVNFILLSATVPNTL 448 (1248)
T ss_pred ccceEEEEeccCCChH
Confidence 4457999999987743
No 134
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=99.77 E-value=1.2e-17 Score=200.98 Aligned_cols=414 Identities=16% Similarity=0.165 Sum_probs=240.2
Q ss_pred cchHHHHHHHHHHhc---C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK---Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~---~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+++||...+++... + |.|++.+||.|||...+.+|.++.+..+..+. -+|+||+..|+. |..+|..+. .+
T Consensus 394 ~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP--~LvivPlstL~N-W~~Ef~kWaPSv 470 (1157)
T KOG0386|consen 394 ELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGP--FLIIVPLSTLVN-WSSEFPKWAPSV 470 (1157)
T ss_pred CCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCC--eEEeccccccCC-chhhccccccce
Confidence 489999999998875 3 79999999999999999999988876544333 689999988865 666666554 57
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcH-HHHHHHHHHhhc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQY-ACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~-~~im~~f~~~~~ 173 (1396)
..+.|.|..... +.-.-.....+.+|+++|++-+.. ....+.--+|.++|+||.|++++.+.- ...+..+|
T Consensus 471 ~~i~YkGtp~~R--~~l~~qir~gKFnVLlTtyEyiik--dk~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L~t~y---- 542 (1157)
T KOG0386|consen 471 QKIQYKGTPQQR--SGLTKQQRHGKFNVLLTTYEYIIK--DKALLSKISWKYMIIDEGHRMKNAICKLTDTLNTHY---- 542 (1157)
T ss_pred eeeeeeCCHHHH--hhHHHHHhcccceeeeeeHHHhcC--CHHHHhccCCcceeecccccccchhhHHHHHhhccc----
Confidence 788888863221 111112222589999999998875 334444557899999999999975421 11122222
Q ss_pred cCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHH
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
..++.++||+||..++-.. +-.|-+.+-..|+. ....+..+...|-...- +......+- -
T Consensus 543 -----~~q~RLLLTGTPLQN~LpE--------LWaLLNFlLP~IFn--S~~~FeqWFN~PFantG--ek~eLteEE---t 602 (1157)
T KOG0386|consen 543 -----RAQRRLLLTGTPLQNNLPE--------LWALLNFLLPNIFN--SCKAFEQWFNQPFANTG--EKVELTEEE---T 602 (1157)
T ss_pred -----cchhhhhhcCChhhhccHH--------HHHHHHHhccchhh--hHhHHHHHhhhhhhhcC--CcccccchH---H
Confidence 4578899999999876432 22222222222222 22334444444332111 111111111 1
Q ss_pred HHHHHHHHHHHHhhhhhhchhh--HHHHHHH-HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc-chH
Q 000607 254 ADELAMIELKHTRSLENLDLNE--AQAELIR-KKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG-FGE 329 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~~~--~~~~~~~-~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~-~~~ 329 (1396)
.-.+..+++.+..++-+...+. ..++... ..++. ++..|.-. ++.......... .+. ...
T Consensus 603 lLIIrRLHkVLRPFlLRRlKkeVE~~LPdKve~viKC----------~mSalQq~----lY~~m~~~g~l~--~d~~~g~ 666 (1157)
T KOG0386|consen 603 LLIIRRLHKVLRPFLLRRLKKEVEQELPDKVEDVIKC----------DMSALQQS----LYKQMQNKGQLL--KDTAKGK 666 (1157)
T ss_pred HHHHHHHHHhhhHHHHHhhhHHHhhhCchhhhHhhhe----------ehhhhhHh----hhHHHHhCCCCC--cCchhcc
Confidence 1222333333222221100000 0000000 00000 00000000 000000000000 000 000
Q ss_pred HHHHHHHHHHHHHHHHhccCCCccc-cCCCCcccC---CCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH
Q 000607 330 TIIKKFGSDASQALVTYVPSGAEWS-IGDDSKFNL---DSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS 405 (1396)
Q Consensus 330 ~~~~~~l~~~~~~l~~~~~~~~~~~-~~~~~~~~~---~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~ 405 (1396)
.. ..-+.+..-.++..|...-.+. ...+..... +.--.+.|+..|-.+|-... ..+.+++.|++.......+..
T Consensus 667 ~g-~k~L~N~imqLRKiCNHP~lf~~ve~~~~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEd 744 (1157)
T KOG0386|consen 667 KG-YKPLFNTIMQLRKLCNHPYLFANVENSYTLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILED 744 (1157)
T ss_pred cc-chhhhhHhHHHHHhcCCchhhhhhccccccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHH
Confidence 00 0111122222333332211110 000111100 11123678888877777753 578999999999888888888
Q ss_pred HHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---eeEEEEecccccccCCCcccEEEEeCCCCcHHHH
Q 000607 406 LLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482 (1396)
Q Consensus 406 ~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~y 482 (1396)
+|.- .+++...+.|.+ ...+|-..++.|..-. ...|.+|..++-|+|++.++.||.||..||+..+
T Consensus 745 yL~~-----~~~kYlRLDG~T------K~~eRg~ll~~FN~Pds~yf~FllstragglglNlQtadtviifdsdwnp~~d 813 (1157)
T KOG0386|consen 745 YLQI-----REYKYLRLDGQT------KVEERGDLLEIFNAPDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQD 813 (1157)
T ss_pred HHhh-----hhhheeeecCCc------chhhHHHHHHHhcCCCCceeeeeeeecccccccchhhcceEEEecCCCCchhH
Confidence 8873 578888999986 7789999999998744 4577899999999999999999999999999999
Q ss_pred HHhhhcccCCCC
Q 000607 483 IQSRGRARMQNS 494 (1396)
Q Consensus 483 iQr~GRA~R~gs 494 (1396)
.|+..||.|.|+
T Consensus 814 ~qaqdrahrigq 825 (1157)
T KOG0386|consen 814 LQAQDRAHRIGQ 825 (1157)
T ss_pred HHHHHHHHHhhc
Confidence 999999999996
No 135
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.76 E-value=4.5e-16 Score=194.34 Aligned_cols=132 Identities=24% Similarity=0.343 Sum_probs=112.1
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..++..|++.|..+. ..+.++||||+++..++.|.+.|.+. ++++.++||. |++.+|.+++++|+.|+
T Consensus 425 ~~qi~~Ll~eI~~~~-~~g~~vLIf~~tk~~ae~L~~~L~~~-----gi~~~~lh~~------~~~~eR~~~l~~fr~G~ 492 (655)
T TIGR00631 425 DGQVDDLLSEIRQRV-ARNERVLVTTLTKKMAEDLTDYLKEL-----GIKVRYLHSE------IDTLERVEIIRDLRLGE 492 (655)
T ss_pred cchHHHHHHHHHHHH-cCCCEEEEEECCHHHHHHHHHHHhhh-----ccceeeeeCC------CCHHHHHHHHHHHhcCC
Confidence 446667777777653 46789999999999999999999974 7899999987 58999999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeC-----CCCcHHHHHHhhhcccCCC-CcEEEEEecCCcchHHHHH
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFD-----PSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLE 512 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD-----~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~ 512 (1396)
+.|||||+++++|+|+|++++||++| .|.+..+|+||+|||||.. |+++++++..+......+.
T Consensus 493 i~VLV~t~~L~rGfDiP~v~lVvi~DadifG~p~~~~~~iqriGRagR~~~G~vi~~~~~~~~~~~~ai~ 562 (655)
T TIGR00631 493 FDVLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVIMYADKITDSMQKAIE 562 (655)
T ss_pred ceEEEEcChhcCCeeeCCCcEEEEeCcccccCCCCHHHHHHHhcCCCCCCCCEEEEEEcCCCHHHHHHHH
Confidence 99999999999999999999999998 7999999999999999975 5677776655444444443
No 136
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.76 E-value=8.3e-18 Score=183.81 Aligned_cols=163 Identities=24% Similarity=0.220 Sum_probs=125.3
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...|++||.++++.+.++ |+++++|||+|||+++++.+.......+...+.+++|++|+++|+.|+.+.++.+. +.
T Consensus 19 ~~~~~~~Q~~~~~~~~~~~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~~~ 98 (203)
T cd00268 19 FEKPTPIQARAIPPLLSGRDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHTNL 98 (203)
T ss_pred CCCCCHHHHHHHHHHhcCCcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccCCc
Confidence 345899999999999986 89999999999999987754433222211356789999999999999999888764 67
Q ss_pred eEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~ 173 (1396)
++..++|+.... .+.... .+++|+|+||+.+.+.+.++...+.+++++|+||||++.+. .+...+..+...
T Consensus 99 ~~~~~~~~~~~~-----~~~~~~~~~~~iiv~T~~~l~~~l~~~~~~~~~l~~lIvDE~h~~~~~-~~~~~~~~~~~~-- 170 (203)
T cd00268 99 KVVVIYGGTSID-----KQIRKLKRGPHIVVATPGRLLDLLERGKLDLSKVKYLVLDEADRMLDM-GFEDQIREILKL-- 170 (203)
T ss_pred eEEEEECCCCHH-----HHHHHhcCCCCEEEEChHHHHHHHHcCCCChhhCCEEEEeChHHhhcc-ChHHHHHHHHHh--
Confidence 888888875432 122233 37899999999999999888888899999999999998843 445555544432
Q ss_pred cCCCCCCCeEEEEeccCCC
Q 000607 174 ETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~ 192 (1396)
....++++++||||..
T Consensus 171 ---l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 171 ---LPKDRQTLLFSATMPK 186 (203)
T ss_pred ---CCcccEEEEEeccCCH
Confidence 1336789999999964
No 137
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.76 E-value=1e-17 Score=195.01 Aligned_cols=366 Identities=19% Similarity=0.157 Sum_probs=219.3
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+.+-|+|..++..+-++ .++|.+-|.+|||.+|-.+|..-+. .+.|+++-.|-++|-+|-++++...++ .||+
T Consensus 128 F~LDpFQ~~aI~Cidr~eSVLVSAHTSAGKTVVAeYAIA~sLr-----~kQRVIYTSPIKALSNQKYREl~~EF~-DVGL 201 (1041)
T KOG0948|consen 128 FTLDPFQSTAIKCIDRGESVLVSAHTSAGKTVVAEYAIAMSLR-----EKQRVIYTSPIKALSNQKYRELLEEFK-DVGL 201 (1041)
T ss_pred cccCchHhhhhhhhcCCceEEEEeecCCCcchHHHHHHHHHHH-----hcCeEEeeChhhhhcchhHHHHHHHhc-ccce
Confidence 34789999999877776 6999999999999999987653322 467899999999999999999987653 5788
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
.+|+...+. ++--+|||.++|.++|-+|---+..+.-+||||.|-+.+.. ++..+...-...+
T Consensus 202 MTGDVTInP-----------~ASCLVMTTEILRsMLYRGSEvmrEVaWVIFDEIHYMRDkE------RGVVWEETIIllP 264 (1041)
T KOG0948|consen 202 MTGDVTINP-----------DASCLVMTTEILRSMLYRGSEVMREVAWVIFDEIHYMRDKE------RGVVWEETIILLP 264 (1041)
T ss_pred eecceeeCC-----------CCceeeeHHHHHHHHHhccchHhheeeeEEeeeehhccccc------cceeeeeeEEecc
Confidence 899865442 57789999999999999998889999999999999998643 2222221111234
Q ss_pred CCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccC--CCCchhhHHHHHHH
Q 000607 179 NLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKY--DEIPHALYTHLADE 256 (1396)
Q Consensus 179 ~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~--~~~~~~~~~~l~~~ 256 (1396)
+.-|.+.||||..+.. ++.+-|+.+..--.-.+||- |.|+|-...+ |.. ..+.--+..
T Consensus 265 ~~vr~VFLSATiPNA~------qFAeWI~~ihkQPcHVVYTd--------yRPTPLQHyi-fP~ggdGlylvVDe----- 324 (1041)
T KOG0948|consen 265 DNVRFVFLSATIPNAR------QFAEWICHIHKQPCHVVYTD--------YRPTPLQHYI-FPAGGDGLYLVVDE----- 324 (1041)
T ss_pred ccceEEEEeccCCCHH------HHHHHHHHHhcCCceEEeec--------CCCCcceeee-ecCCCCeeEEEEec-----
Confidence 5567889999997743 33333433333222234442 3333332221 111 000000000
Q ss_pred HHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHH
Q 000607 257 LAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFG 336 (1396)
Q Consensus 257 l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 336 (1396)
..++. ..-.
T Consensus 325 -------------k~~Fr----------------------------------------------------------ednF 333 (1041)
T KOG0948|consen 325 -------------KGKFR----------------------------------------------------------EDNF 333 (1041)
T ss_pred -------------ccccc----------------------------------------------------------hHHH
Confidence 00000 0000
Q ss_pred HHHHHHHHHhccCCCccccCCC-Cc-ccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhc---
Q 000607 337 SDASQALVTYVPSGAEWSIGDD-SK-FNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELL--- 411 (1396)
Q Consensus 337 ~~~~~~l~~~~~~~~~~~~~~~-~~-~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~--- 411 (1396)
..+.+.+...-..++....... -. .....+....-+.+++..+.+ .+...+|||+=++..++.++--+.++.
T Consensus 334 ~~am~~l~~~~~~~~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~---~~~~PVIvFSFSkkeCE~~Alqm~kldfN~ 410 (1041)
T KOG0948|consen 334 QKAMSVLRKAGESDGKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME---RNYLPVIVFSFSKKECEAYALQMSKLDFNT 410 (1041)
T ss_pred HHHHHHhhccCCCccccccccccccCCcCCCCCCcccHHHHHHHHHh---hcCCceEEEEecHhHHHHHHHhhccCcCCC
Confidence 0011111110000000000000 00 000001112233444444433 466789999998888887776665431
Q ss_pred -------------------------CCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCc
Q 000607 412 -------------------------PRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQS 466 (1396)
Q Consensus 412 -------------------------p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~ 466 (1396)
|...++-+...-|-+-.+.|+-+--.+-+.--|+.|-+++|+||...+-|+|.|+
T Consensus 411 deEk~~V~~iF~nAi~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEGLvKvLFATETFsiGLNMPA 490 (1041)
T KOG0948|consen 411 DEEKELVETIFNNAIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEGLVKVLFATETFSIGLNMPA 490 (1041)
T ss_pred hhHHHHHHHHHHHHHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhccHHHHHHhhhhhhhccCCcc
Confidence 0000111111112111223455555556666799999999999999999999999
Q ss_pred ccEEE----EeCCC----CcHHHHHHhhhcccCCC----CcEEEEEec
Q 000607 467 CNLVI----MFDPS----RTVCSFIQSRGRARMQN----SDYLLMVKS 502 (1396)
Q Consensus 467 ~~lVI----~fD~p----~s~~~yiQr~GRA~R~g----s~~i~lv~~ 502 (1396)
-.+|. -||-- -|.-.|||+.|||||.| |.+|+|+++
T Consensus 491 kTVvFT~~rKfDG~~fRwissGEYIQMSGRAGRRG~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 491 KTVVFTAVRKFDGKKFRWISSGEYIQMSGRAGRRGIDDRGIVILMIDE 538 (1041)
T ss_pred eeEEEeeccccCCcceeeecccceEEecccccccCCCCCceEEEEecC
Confidence 88887 35542 25678999999999998 578888864
No 138
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.76 E-value=2.9e-17 Score=198.33 Aligned_cols=347 Identities=22% Similarity=0.265 Sum_probs=215.2
Q ss_pred cchHHHHHHHH--HHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CC
Q 000607 21 FARNYQLEALE--NALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~--~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~ 94 (1396)
...+||.|.+. ..+++ |.|..+||+.|||++|-+++..-.-. .++.++++.|-+..+..-...+..+. |+
T Consensus 223 ~~fewq~ecls~~~~~e~~nliys~Pts~gktlvaeilml~~~l~----~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 223 KLFEWQAECLSLPRLLERKNLIYSLPTSAGKTLVAEILMLREVLC----RRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHhcchhhhcccceEEeCCCccchHHHHHHHHHHHHHH----HhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 36788998874 45554 99999999999999999876543221 35679999999988888777777664 88
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHHHHHHHHhh
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACIMTEFYHRL 172 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~ 172 (1396)
.|..|.|.-... ...+.-.|.|||.+.-..+.+.- .-+++.+.+||+||-|.+.+.+--. ++..+..+.
T Consensus 299 ~ve~y~g~~~p~--------~~~k~~sv~i~tiEkanslin~lie~g~~~~~g~vvVdElhmi~d~~rg~-~lE~~l~k~ 369 (1008)
T KOG0950|consen 299 PVEEYAGRFPPE--------KRRKRESVAIATIEKANSLINSLIEQGRLDFLGMVVVDELHMIGDKGRGA-ILELLLAKI 369 (1008)
T ss_pred cchhhcccCCCC--------CcccceeeeeeehHhhHhHHHHHHhcCCccccCcEEEeeeeeeeccccch-HHHHHHHHH
Confidence 998888765433 23346789999998766544322 2245678999999999999764322 222222211
Q ss_pred ccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHH
Q 000607 173 LETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 173 ~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
+-......-+|+|||||..+ +..|+.+|++.+|+. +|.|.|-...+..... +...-...
T Consensus 370 ~y~~~~~~~~iIGMSATi~N-------------~~lL~~~L~A~~y~t-------~fRPv~L~E~ik~G~~-i~~~~r~~ 428 (1008)
T KOG0950|consen 370 LYENLETSVQIIGMSATIPN-------------NSLLQDWLDAFVYTT-------RFRPVPLKEYIKPGSL-IYESSRNK 428 (1008)
T ss_pred HHhccccceeEeeeecccCC-------------hHHHHHHhhhhheec-------ccCcccchhccCCCcc-cccchhhH
Confidence 11112233679999999987 456899999988876 2333222211111110 00000000
Q ss_pred HHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHH
Q 000607 253 LADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETII 332 (1396)
Q Consensus 253 l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 332 (1396)
. +..+ +.
T Consensus 429 ~---lr~i---------------------------------------a~------------------------------- 435 (1008)
T KOG0950|consen 429 V---LREI---------------------------------------AN------------------------------- 435 (1008)
T ss_pred H---HHHh---------------------------------------hh-------------------------------
Confidence 0 0000 00
Q ss_pred HHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 333 KKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 333 ~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.... ..+.. .| +.++.+..+- ..++.++||||++|..++.++..+....|
T Consensus 436 ---------l~~~--------~~g~~----------dp--D~~v~L~tet-~~e~~~~lvfc~sk~~ce~~a~~~~~~vp 485 (1008)
T KOG0950|consen 436 ---------LYSS--------NLGDE----------DP--DHLVGLCTET-APEGSSVLVFCPSKKNCENVASLIAKKVP 485 (1008)
T ss_pred ---------hhhh--------hcccC----------CC--cceeeehhhh-hhcCCeEEEEcCcccchHHHHHHHHHHhh
Confidence 0000 00000 00 0011111110 12466799999999888777655543222
Q ss_pred CC------CC-----------------cee----eEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 413 RH------CT-----------------WKT----KYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 413 ~~------~~-----------------~~~----~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.. .+ +.+ ..-.|..-.+.|++..+|+.+-..||+|-+.|++||+.+.-|++.|
T Consensus 486 k~~~~e~~~~~~~~~s~s~~lr~~~~~ld~Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g~i~vl~aTSTlaaGVNLP 565 (1008)
T KOG0950|consen 486 KHIKSEKRLGLWELLSISNLLRRIPGILDPVLAKTIPYGVAYHHAGLTSEEREIIEAAFREGNIFVLVATSTLAAGVNLP 565 (1008)
T ss_pred HhhhhhhhhhHHHHHHHHhHhhcCCcccchHHheeccccceecccccccchHHHHHHHHHhcCeEEEEecchhhccCcCC
Confidence 10 00 000 0001111123578999999999999999999999999999999999
Q ss_pred cccEEEEeCC----CCcHHHHHHhhhcccCCC----CcEEEEEecCC
Q 000607 466 SCNLVIMFDP----SRTVCSFIQSRGRARMQN----SDYLLMVKSGD 504 (1396)
Q Consensus 466 ~~~lVI~fD~----p~s~~~yiQr~GRA~R~g----s~~i~lv~~~~ 504 (1396)
+..++|++-. ..+...|.|+.|||||.| +..++++...+
T Consensus 566 ArRVIiraP~~g~~~l~~~~YkQM~GRAGR~gidT~GdsiLI~k~~e 612 (1008)
T KOG0950|consen 566 ARRVIIRAPYVGREFLTRLEYKQMVGRAGRTGIDTLGDSILIIKSSE 612 (1008)
T ss_pred cceeEEeCCccccchhhhhhHHhhhhhhhhcccccCcceEEEeeccc
Confidence 9999998754 446789999999999998 56788877654
No 139
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.76 E-value=6.1e-18 Score=179.06 Aligned_cols=158 Identities=23% Similarity=0.344 Sum_probs=120.0
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---CeEEE
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LKVGK 98 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~~ 98 (1396)
.|+|.++++.+.++ |+++.+|||+|||+++...+.... .+ ....++++++|+++|+.|+.+.++.+.. .++..
T Consensus 1 t~~Q~~~~~~i~~~~~~li~aptGsGKT~~~~~~~l~~~--~~-~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGKNVLISAPTGSGKTLAYILPALNRL--QE-GKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTSEEEEECSTTSSHHHHHHHHHHHHH--HT-TSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCCCEEEECCCCCccHHHHHHHHHhhh--cc-CCCceEEEEeeccccccccccccccccccccccccc
Confidence 48999999999975 799999999999999987554322 22 2445899999999999999999998864 58888
Q ss_pred EeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCC
Q 000607 99 YWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGD 177 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~ 177 (1396)
++|+...+ ......+ .+++|+|+||+.|.+.+.++...+.++++|||||||++... .+...+....... ..
T Consensus 78 ~~~~~~~~----~~~~~~~~~~~~ilv~T~~~l~~~~~~~~~~~~~~~~iViDE~h~l~~~-~~~~~~~~i~~~~---~~ 149 (169)
T PF00270_consen 78 LHGGQSIS----EDQREVLSNQADILVTTPEQLLDLISNGKINISRLSLIVIDEAHHLSDE-TFRAMLKSILRRL---KR 149 (169)
T ss_dssp ESTTSCHH----HHHHHHHHTTSSEEEEEHHHHHHHHHTTSSTGTTESEEEEETHHHHHHT-THHHHHHHHHHHS---HT
T ss_pred cccccccc----ccccccccccccccccCcchhhccccccccccccceeeccCcccccccc-cHHHHHHHHHHHh---cC
Confidence 88875422 1122222 36999999999999999987667888999999999999976 4444444444321 11
Q ss_pred CCCCeEEEEeccCC
Q 000607 178 SNLPRIFGMTASPI 191 (1396)
Q Consensus 178 ~~~p~ilgLTATp~ 191 (1396)
...+++++|||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 22478999999995
No 140
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.76 E-value=3.1e-16 Score=182.17 Aligned_cols=463 Identities=16% Similarity=0.127 Sum_probs=249.9
Q ss_pred cccchHHHHHHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHH--HHhc---CCCCcEEEEEeCCcccHHHHHHH
Q 000607 19 LPFARNYQLEALENALKQ------NTIVFLETGSGKTLIAIMLLRSYA--YLLR---KPSPFVAVFLVPKVVLVPQQAEA 87 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~--~~~~---~~~~k~vl~LvPt~~Lv~Q~~~~ 87 (1396)
...+-++|..++....-+ ..|+++++|.|||++.+.+|.+-- +..+ ......+|||||. .|+.||+.+
T Consensus 323 ~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~Pa-Sli~qW~~E 401 (901)
T KOG4439|consen 323 KVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPA-SLIHQWEAE 401 (901)
T ss_pred eeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcH-HHHHHHHHH
Confidence 344799999999877742 599999999999998777664322 1221 1122359999999 899999999
Q ss_pred HHHhc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHH----hHhhc----CccccceeEEEEecccccc
Q 000607 88 IKMHT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLD----GLRLS----YFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 88 i~~~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~----~l~~~----~~~l~~i~llI~DEaH~~~ 156 (1396)
+.+-. .++|.+|+|... .+.-.+.+..+||||+||....+ -+..+ .+.--.|+-||+||||.+.
T Consensus 402 v~~rl~~n~LsV~~~HG~n~-----r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~Ir 476 (901)
T KOG4439|consen 402 VARRLEQNALSVYLYHGPNK-----REISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIR 476 (901)
T ss_pred HHHHHhhcceEEEEecCCcc-----ccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhc
Confidence 98765 489999999842 23345677899999999998876 12111 1222357899999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEec----------------
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC---------------- 220 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~---------------- 220 (1396)
+..+-......-+ ..-....|||||+.++.. +++.|-..|+..-+.-
T Consensus 477 N~~tq~S~AVC~L---------~a~~RWclTGTPiqNn~~--------DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~ 539 (901)
T KOG4439|consen 477 NSNTQCSKAVCKL---------SAKSRWCLTGTPIQNNLW--------DVYSLLRFLRCPPFGDLKQWKENIDNMSKGGA 539 (901)
T ss_pred ccchhHHHHHHHH---------hhcceeecccCccccchh--------HHHHHHHHhcCCCcchHHHHHHhccCccccch
Confidence 8654333322111 112368999999998754 3555555554443320
Q ss_pred -------------cChhhhcc---cccCCcceeE--eccCCCCchhhHHHHHHHHHHHHHHHHhhhhh----hchhh-HH
Q 000607 221 -------------ASESVLSN---FIPFSTAKFK--FYKYDEIPHALYTHLADELAMIELKHTRSLEN----LDLNE-AQ 277 (1396)
Q Consensus 221 -------------~~~~~l~~---~~~~~~~~~~--~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~----~~~~~-~~ 277 (1396)
+..+.+.. .+.-|...+. ...-..-....+..+...-..+.+++...-.. .++.. ..
T Consensus 540 ~rlnll~K~LmLRRTKdQl~a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~ 619 (901)
T KOG4439|consen 540 NRLNLLTKSLMLRRTKDQLQANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNR 619 (901)
T ss_pred hhhhhhhhhHHhhhhHHhhccccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccch
Confidence 00001100 0111111111 11100001111221111111111221110000 00000 00
Q ss_pred H-------------HHHHHH---HHHHHHHHHHHHHhHHHHHHHHHHHHh-hccccchhhhhhcccchHHHHHHHHHHHH
Q 000607 278 A-------------ELIRKK---VSKINSTLLYCLSELGVWLALKAAETI-SCYESDFFAWEQLDGFGETIIKKFGSDAS 340 (1396)
Q Consensus 278 ~-------------~~~~~~---~~~~~~~~~~~~~~lg~~~a~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (1396)
. ...... -.+.+..++..+--|...|.+-. +. ...+...+.....+.+.++... .+..
T Consensus 620 ~~~~~~e~~~~~~~~pR~~aagsn~~~~s~IL~LLlrLRQ~ccH~~--~~k~~ld~~~~~~~g~~~sde~~~e---~~~l 694 (901)
T KOG4439|consen 620 FIGGHDEFGNYYNIGPRFLAAGSNFEIMSHILVLLLRLRQACCHFG--LLKAALDPEEFQMNGGDDSDEEQLE---EDNL 694 (901)
T ss_pred hccccccccccccccchhhhcCCchhhHHHHHHHHHHHHHHhcCcc--hhccccCHHHhhhcCcchhhhhhhh---hhHH
Confidence 0 000000 00111112222222222222110 00 0000000000001111111000 0111
Q ss_pred HHHHHhcc----CCCccccCC-CCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCC
Q 000607 341 QALVTYVP----SGAEWSIGD-DSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHC 415 (1396)
Q Consensus 341 ~~l~~~~~----~~~~~~~~~-~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~ 415 (1396)
..+..... .++.-..+. ...+.......|-|+...++++.........+++|-.+-......+..-|++ .
T Consensus 695 ~el~k~~~T~~~~D~~ed~p~~~~~q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~-----~ 769 (901)
T KOG4439|consen 695 AELEKNDETDCSDDNCEDLPTAFPDQAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQK-----G 769 (901)
T ss_pred HhhhhcccccccccccccccccchhhhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhh-----C
Confidence 11111111 110000000 0111223344688999988888875445677888888887777777777776 4
Q ss_pred CceeeEEecCCCCcCCCCHHHHHHHHHHHhc--CCee-EEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 416 TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--GLVN-VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 416 ~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--g~~n-vLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
|+....++|.. ..++|+++++.|.. |..+ .|++-..++.|||+-..|++|..|+.||+.---|...|..|.
T Consensus 770 g~~y~si~Gqv------~vK~Rq~iv~~FN~~k~~~rVmLlSLtAGGVGLNL~GaNHlilvDlHWNPaLEqQAcDRIYR~ 843 (901)
T KOG4439|consen 770 GHIYTSITGQV------LVKDRQEIVDEFNQEKGGARVMLLSLTAGGVGLNLIGANHLILVDLHWNPALEQQACDRIYRM 843 (901)
T ss_pred CeeeeeecCcc------chhHHHHHHHHHHhccCCceEEEEEEccCcceeeecccceEEEEecccCHHHHHHHHHHHHHh
Confidence 78889999985 88999999999964 4344 556778899999999999999999999999999999999999
Q ss_pred CCc----EEEEEecCCcchHHHHHHHHHHHHHHH
Q 000607 493 NSD----YLLMVKSGDSTTQSRLENYLASGNKMR 522 (1396)
Q Consensus 493 gs~----~i~lv~~~~~~~~~~i~~~~~~e~~m~ 522 (1396)
|++ .+-++..| ...+++..++.....+.
T Consensus 844 GQkK~V~IhR~~~~g--TvEqrV~~LQdkKldlA 875 (901)
T KOG4439|consen 844 GQKKDVFIHRLMCKG--TVEQRVKSLQDKKLDLA 875 (901)
T ss_pred cccCceEEEEEEecC--cHHHHHHHHHHHHHHHH
Confidence 963 22333445 33455665555444443
No 141
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.75 E-value=4.8e-17 Score=175.11 Aligned_cols=294 Identities=18% Similarity=0.211 Sum_probs=193.4
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
-||.|.+++...+.+ +..+.+|||.||++++.+... + ....+++++|...|++.|.-.+++. |+....+.
T Consensus 95 frplq~~ain~~ma~ed~~lil~tgggkslcyqlpal--~------adg~alvi~plislmedqil~lkql-gi~as~ln 165 (695)
T KOG0353|consen 95 FRPLQLAAINATMAGEDAFLILPTGGGKSLCYQLPAL--C------ADGFALVICPLISLMEDQILQLKQL-GIDASMLN 165 (695)
T ss_pred cChhHHHHhhhhhccCceEEEEeCCCccchhhhhhHH--h------cCCceEeechhHHHHHHHHHHHHHh-Ccchhhcc
Confidence 599999999999997 899999999999999886443 2 2446999999999999999888874 55444443
Q ss_pred CCCCcccCCccchHHh-----hccCcEEEecHHHHHH------hHhhcCccccceeEEEEeccccccCC-CcHHHHH--H
Q 000607 101 GDMGVDFWDGATWKEE-----MSKHEVLVMTPQILLD------GLRLSYFKLNMIKVLILDECHHARGK-HQYACIM--T 166 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~-----~~~~~ViV~T~q~L~~------~l~~~~~~l~~i~llI~DEaH~~~~~-~~~~~im--~ 166 (1396)
..... ....|-.. -...+.+..||+.+.. -|.. -+....+.+|-+||+|++... |.++.-- -
T Consensus 166 anssk---e~~k~v~~~i~nkdse~kliyvtpekiaksk~~mnklek-a~~~~~~~~iaidevhccsqwghdfr~dy~~l 241 (695)
T KOG0353|consen 166 ANSSK---EEAKRVEAAITNKDSEFKLIYVTPEKIAKSKKFMNKLEK-ALEAGFFKLIAIDEVHCCSQWGHDFRPDYKAL 241 (695)
T ss_pred CcccH---HHHHHHHHHHcCCCceeEEEEecHHHHHHHHHHHHHHHH-HhhcceeEEEeecceeehhhhCcccCcchHHH
Confidence 33211 12223221 1256789999998763 2222 234567899999999999843 3222111 1
Q ss_pred HHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeEEeccChhhhcccccCCcceeEeccCCCCc
Q 000607 167 EFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTCASESVLSNFIPFSTAKFKFYKYDEIP 246 (1396)
Q Consensus 167 ~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~ 246 (1396)
+.+.++ -+...|+|||||..+..- +-.+.+..++..+ |. .....+|.. .|.....|
T Consensus 242 ~ilkrq-----f~~~~iigltatatn~vl-----~d~k~il~ie~~~-----tf------~a~fnr~nl---~yev~qkp 297 (695)
T KOG0353|consen 242 GILKRQ-----FKGAPIIGLTATATNHVL-----DDAKDILCIEAAF-----TF------RAGFNRPNL---KYEVRQKP 297 (695)
T ss_pred HHHHHh-----CCCCceeeeehhhhcchh-----hHHHHHHhHHhhh-----ee------ecccCCCCc---eeEeeeCC
Confidence 111111 123459999999866432 1122233333322 10 001111111 11111111
Q ss_pred hhhHHHHHHHHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhccc
Q 000607 247 HALYTHLADELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDG 326 (1396)
Q Consensus 247 ~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~ 326 (1396)
..
T Consensus 298 ~n------------------------------------------------------------------------------ 299 (695)
T KOG0353|consen 298 GN------------------------------------------------------------------------------ 299 (695)
T ss_pred CC------------------------------------------------------------------------------
Confidence 11
Q ss_pred chHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHH
Q 000607 327 FGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSL 406 (1396)
Q Consensus 327 ~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~ 406 (1396)
...-.+.+..+++. .-.+..+||+|=++..++.++..
T Consensus 300 -----------------------------------------~dd~~edi~k~i~~--~f~gqsgiiyc~sq~d~ekva~a 336 (695)
T KOG0353|consen 300 -----------------------------------------EDDCIEDIAKLIKG--DFAGQSGIIYCFSQKDCEKVAKA 336 (695)
T ss_pred -----------------------------------------hHHHHHHHHHHhcc--ccCCCcceEEEeccccHHHHHHH
Confidence 01112222222322 12567899999999999999999
Q ss_pred HHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHH
Q 000607 407 LSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQ 484 (1396)
Q Consensus 407 L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQ 484 (1396)
|+.+ |+..+..|.. |.+.++..+-+.+-.|++.|+|||-..+.|||-|++..||+..+|.+...|.|
T Consensus 337 lkn~-----gi~a~~yha~------lep~dks~~hq~w~a~eiqvivatvafgmgidkpdvrfvihhsl~ksienyyq 403 (695)
T KOG0353|consen 337 LKNH-----GIHAGAYHAN------LEPEDKSGAHQGWIAGEIQVIVATVAFGMGIDKPDVRFVIHHSLPKSIENYYQ 403 (695)
T ss_pred HHhc-----Cccccccccc------cCccccccccccccccceEEEEEEeeecccCCCCCeeEEEecccchhHHHHHH
Confidence 9975 7777777765 68888888888899999999999999999999999999999999999999999
No 142
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=99.74 E-value=6.1e-16 Score=186.40 Aligned_cols=125 Identities=18% Similarity=0.235 Sum_probs=105.8
Q ss_pred CccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc
Q 000607 367 LLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR 446 (1396)
Q Consensus 367 ~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~ 446 (1396)
+-..|++.|.-+|.+.. ..+.|||||++-..+.++|..+|+-+ |+-...+.|.+ +-++|+..+++|..
T Consensus 1257 yDcGKLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyH-----gylY~RLDg~t------~vEqRQaLmerFNa 1324 (1958)
T KOG0391|consen 1257 YDCGKLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYH-----GYLYVRLDGNT------SVEQRQALMERFNA 1324 (1958)
T ss_pred cccchHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhc-----ceEEEEecCCc------cHHHHHHHHHHhcC
Confidence 34678888877777753 57899999999999999999999864 78888899986 78999999999987
Q ss_pred CC--eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecC
Q 000607 447 GL--VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSG 503 (1396)
Q Consensus 447 g~--~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~ 503 (1396)
.. ...|++|..++.|||+..++.||+||..||+.--.|.-.|..|.|. ..|-|+.+.
T Consensus 1325 D~RIfcfILSTrSggvGiNLtgADTVvFYDsDwNPtMDaQAQDrChRIGqtRDVHIYRLISe~ 1387 (1958)
T KOG0391|consen 1325 DRRIFCFILSTRSGGVGINLTGADTVVFYDSDWNPTMDAQAQDRCHRIGQTRDVHIYRLISER 1387 (1958)
T ss_pred CCceEEEEEeccCCccccccccCceEEEecCCCCchhhhHHHHHHHhhcCccceEEEEeeccc
Confidence 54 4567799999999999999999999999999999999999999985 455666543
No 143
>cd02844 PAZ_CAF_like PAZ domain, CAF_like subfamily. CAF (for carpel factory) is a plant homolog of Dicer. CAF has been implicated in flower morphogenesis and in early Arabidopsis development and might function through posttranscriptional regulation of specific mRNA molecules. PAZ domains are named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.73 E-value=8.2e-18 Score=165.15 Aligned_cols=115 Identities=39% Similarity=0.812 Sum_probs=99.0
Q ss_pred cccccccCCCcccccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCC-CcccHHHHHHHHhCceeccCCCceEeeec
Q 000607 819 ARIVHTKSGPLCTCKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNG-SVTTYKKHYEERYGIQLCFDREPLLNGRR 897 (1396)
Q Consensus 819 ~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~-~~~ty~~y~~~k~~~~i~~~~QPll~~~~ 897 (1396)
..++++.+|.+..++++|.+|+++|+++.|.|.+|. +++|.|+|+..++ ...||++||+++||+.|.+++||||+++.
T Consensus 16 ~~~l~~~~~~~~~~~l~g~~V~t~hn~r~Y~I~~i~-~~~p~s~F~~~~~~~~~Sy~eYy~~kY~i~L~~~~QPLL~~~~ 94 (135)
T cd02844 16 SDLLHLADGSFCACDLKGSVVTAPHNGRFYVISGIL-DLNANSSFPGKEGLGYATYAEYFKEKYGIVLNHPNQPLLKGKQ 94 (135)
T ss_pred cceeeeccCcccHHHhcCCEEEEcCCCcEEEEEEEc-CCCccCcccCCCCCceeeHHHHHHHHhCceeccCCcceEEEec
Confidence 356789999999999999999999999999999999 9999999986554 46799999999999999999999999999
Q ss_pred ccccccccchhhhcccC----CCCcceeeeccccccccccccc
Q 000607 898 IFHVQNYLSKCRQQKQK----EPSKISFELPPELCRIIMAPIS 936 (1396)
Q Consensus 898 ~~~~~n~l~~~~~~~~~----~~~~~~~~L~pelC~~~~~p~~ 936 (1396)
+++++|+|+++...++. .....++.||||||.+ +++|
T Consensus 95 ~~~~~NlL~~~~~~~~~~~~~~~~~~~v~L~PELC~~--~~~p 135 (135)
T cd02844 95 IFNLHNLLHNRFEEKGESEEKEKDRYFVELPPELCSV--IDLP 135 (135)
T ss_pred ccccceecccccccccccccccccceEEEeChHHhcc--ccCC
Confidence 99999999998764432 3334458999999965 5543
No 144
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.73 E-value=3.9e-16 Score=186.80 Aligned_cols=154 Identities=20% Similarity=0.295 Sum_probs=112.4
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CC
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~ 94 (1396)
..|-.||.+.+...-++ ..+|++||-+|||++.-..|... +|....+.+++++||.+|+.|....+..-+ -.
T Consensus 510 F~Pd~WQ~elLDsvDr~eSavIVAPTSaGKTfisfY~iEKV---LResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNESAVIVAPTSAGKTFISFYAIEKV---LRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhcccceEEEeeccCCceeccHHHHHHH---HhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 44889999999988877 59999999999999988777655 345567889999999999999887766433 23
Q ss_pred eEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh---cCccccceeEEEEeccccccCC---CcHHHHHHHH
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL---SYFKLNMIKVLILDECHHARGK---HQYACIMTEF 168 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~---~~~~l~~i~llI~DEaH~~~~~---~~~~~im~~f 168 (1396)
+-..+.|++..++ +...| +++|+|+-|+.+-.+|.. ..-..+++.++||||+|.+.+. +.+.++..
T Consensus 587 rg~sl~g~ltqEY-sinp~-----nCQVLITvPecleslLlspp~~q~~cerIRyiIfDEVH~iG~~ed~l~~Eqll~-- 658 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEY-SINPW-----NCQVLITVPECLESLLLSPPHHQKFCERIRYIIFDEVHLIGNEEDGLLWEQLLL-- 658 (1330)
T ss_pred cchhhHhhhhHHh-cCCch-----hceEEEEchHHHHHHhcCchhhhhhhhcceEEEechhhhccccccchHHHHHHH--
Confidence 4444566654442 22234 699999999999887764 3344578999999999999853 22222211
Q ss_pred HHhhccCCCCCCCeEEEEeccCCCC
Q 000607 169 YHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 169 ~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
..+.| +|+||||..+.
T Consensus 659 --------li~CP-~L~LSATigN~ 674 (1330)
T KOG0949|consen 659 --------LIPCP-FLVLSATIGNP 674 (1330)
T ss_pred --------hcCCC-eeEEecccCCH
Confidence 12333 89999999773
No 145
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.72 E-value=1.8e-16 Score=197.94 Aligned_cols=312 Identities=19% Similarity=0.149 Sum_probs=206.8
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..+..++++.+.+.. +||+++||||||..--..+. +... ..+.++.+.-|.+-=+...++.+.+..+-+++...|
T Consensus 52 ~~~~~~i~~ai~~~~vvii~getGsGKTTqlP~~ll---e~g~-~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~VG 127 (845)
T COG1643 52 TAVRDEILKAIEQNQVVIIVGETGSGKTTQLPQFLL---EEGL-GIAGKIGCTQPRRLAARSVAERVAEELGEKLGETVG 127 (845)
T ss_pred HHHHHHHHHHHHhCCEEEEeCCCCCChHHHHHHHHH---hhhc-ccCCeEEecCchHHHHHHHHHHHHHHhCCCcCceee
Confidence 556666776666664 88999999999987443322 1111 345578888899977777888888877766665555
Q ss_pred CCCcccCCccchH-HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 102 DMGVDFWDGATWK-EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 102 ~~~~~~~~~~~~~-~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
=. ..|+ ..-.+.+|-+||.++|++.+.+... ++.+++|||||+|+-.-+ .-++-++....+... ..-
T Consensus 128 Y~-------iRfe~~~s~~Trik~mTdGiLlrei~~D~~-Ls~ys~vIiDEaHERSl~---tDilLgllk~~~~~r-r~D 195 (845)
T COG1643 128 YS-------IRFESKVSPRTRIKVMTDGILLREIQNDPL-LSGYSVVIIDEAHERSLN---TDILLGLLKDLLARR-RDD 195 (845)
T ss_pred EE-------EEeeccCCCCceeEEeccHHHHHHHhhCcc-cccCCEEEEcchhhhhHH---HHHHHHHHHHHHhhc-CCC
Confidence 21 1122 2223689999999999999887665 789999999999986532 233444443321111 112
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
-|++.||||.. ...+.+.++ +.+..+. ....| ..+.|......... +
T Consensus 196 LKiIimSATld--------------~~rfs~~f~~apvi~i~-------GR~fP--Vei~Y~~~~~~d~~---l------ 243 (845)
T COG1643 196 LKLIIMSATLD--------------AERFSAYFGNAPVIEIE-------GRTYP--VEIRYLPEAEADYI---L------ 243 (845)
T ss_pred ceEEEEecccC--------------HHHHHHHcCCCCEEEec-------CCccc--eEEEecCCCCcchh---H------
Confidence 48999999983 334556665 4444331 11111 12223221100000 0
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
T Consensus 244 -------------------------------------------------------------------------------- 243 (845)
T COG1643 244 -------------------------------------------------------------------------------- 243 (845)
T ss_pred --------------------------------------------------------------------------------
Confidence
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCC-CCce
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRH-CTWK 418 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~-~~~~ 418 (1396)
... +...+..........++||.+.....+...+.|.+. .+ ..+.
T Consensus 244 -----------------------------~~a---i~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~--~l~~~~~ 289 (845)
T COG1643 244 -----------------------------LDA---IVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKA--ELGDDLE 289 (845)
T ss_pred -----------------------------HHH---HHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhc--cccCCcE
Confidence 000 111111111234678999999999999999999861 11 3577
Q ss_pred eeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCC----------CCcHH
Q 000607 419 TKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDP----------SRTVC 480 (1396)
Q Consensus 419 ~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~----------p~s~~ 480 (1396)
+..++|. |+..+|.++++---.|.-+|++||+|+|.+|.||++.+|| +||. |-|-.
T Consensus 290 i~PLy~~------L~~~eQ~rvF~p~~~~~RKVVlATNIAETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqA 363 (845)
T COG1643 290 ILPLYGA------LSAEEQVRVFEPAPGGKRKVVLATNIAETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKA 363 (845)
T ss_pred Eeecccc------CCHHHHHhhcCCCCCCcceEEEEccccccceeeCCeEEEecCCcccccccccccCceeeeEEEechh
Confidence 8888987 6999999988877777777999999999999999999999 4554 45778
Q ss_pred HHHHhhhcccCCC-CcEEEEEec
Q 000607 481 SFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 481 ~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
+..||.|||||-+ |.|+-+.++
T Consensus 364 sA~QRaGRAGR~~pGicyRLyse 386 (845)
T COG1643 364 SADQRAGRAGRTGPGICYRLYSE 386 (845)
T ss_pred hhhhhccccccCCCceEEEecCH
Confidence 8999999999987 889999875
No 146
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.72 E-value=2.3e-15 Score=185.91 Aligned_cols=120 Identities=15% Similarity=0.147 Sum_probs=101.6
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++-+.+. ...+.++||||+++..++.|+.+|.. .+++...+++.. ++.++..+.+.|+.|
T Consensus 431 ~~~K~~Aii~ei~~~-~~~GrpVLV~t~sv~~se~ls~~L~~-----~gi~~~vLnak~------~~~Ea~ii~~Ag~~G 498 (908)
T PRK13107 431 ADEKYQAIIKDIKDC-RERGQPVLVGTVSIEQSELLARLMVK-----EKIPHEVLNAKF------HEREAEIVAQAGRTG 498 (908)
T ss_pred HHHHHHHHHHHHHHH-HHcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCeEeccCcc------cHHHHHHHHhCCCCC
Confidence 367888888877764 25788999999999999999999997 488999999974 889999999999999
Q ss_pred CeeEEEEecccccccCCCcc-------------------------------------cEEEEeCCCCcHHHHHHhhhccc
Q 000607 448 LVNVIVATSILEEGLDVQSC-------------------------------------NLVIMFDPSRTVCSFIQSRGRAR 490 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~-------------------------------------~lVI~fD~p~s~~~yiQr~GRA~ 490 (1396)
. |+|||+++++|+||.-- =+||--..+.|.+---|-+||||
T Consensus 499 ~--VtIATnmAGRGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerheSrRID~QLrGRaG 576 (908)
T PRK13107 499 A--VTIATNMAGRGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHESRRIDNQLRGRAG 576 (908)
T ss_pred c--EEEecCCcCCCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCchHHHHhhhhcccc
Confidence 8 99999999999999632 26888899999999999999999
Q ss_pred CCC--CcEEEEEe
Q 000607 491 MQN--SDYLLMVK 501 (1396)
Q Consensus 491 R~g--s~~i~lv~ 501 (1396)
|.| |....+++
T Consensus 577 RQGDPGss~f~lS 589 (908)
T PRK13107 577 RQGDAGSSRFYLS 589 (908)
T ss_pred cCCCCCceeEEEE
Confidence 998 44444444
No 147
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.71 E-value=4.2e-16 Score=193.26 Aligned_cols=423 Identities=17% Similarity=0.132 Sum_probs=237.3
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc----CCeE
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT----DLKV 96 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~----~~~v 96 (1396)
...++.+.+..+.++ .++|.++||+|||...--.|..- ....++..++++--|.|--|.-.++.+...- |-.|
T Consensus 174 a~~~r~~Il~~i~~~qVvvIsGeTGcGKTTQvpQfiLd~--~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~~V 251 (924)
T KOG0920|consen 174 AYKMRDTILDAIEENQVVVISGETGCGKTTQVPQFILDE--AIESGAACNIICTQPRRISAISVAERVAKERGESLGEEV 251 (924)
T ss_pred cHHHHHHHHHHHHhCceEEEeCCCCCCchhhhhHHHHHH--HHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCCee
Confidence 356777777777776 58899999999998876655432 2222355667777799877777777776543 3333
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH-HHHHHHhhccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI-MTEFYHRLLET 175 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i-m~~f~~~~~~~ 175 (1396)
+.-.+-. ........+.+||.++|++.+.. .-.+..+..||+||+|.-.-++.+-.+ ++.+..
T Consensus 252 GYqvrl~----------~~~s~~t~L~fcTtGvLLr~L~~-~~~l~~vthiivDEVHER~i~~DflLi~lk~lL~----- 315 (924)
T KOG0920|consen 252 GYQVRLE----------SKRSRETRLLFCTTGVLLRRLQS-DPTLSGVTHIIVDEVHERSINTDFLLILLKDLLP----- 315 (924)
T ss_pred eEEEeee----------cccCCceeEEEecHHHHHHHhcc-CcccccCceeeeeeEEEccCCcccHHHHHHHHhh-----
Confidence 3222211 12223578999999999999876 455789999999999987766555544 333331
Q ss_pred CCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHh-CCeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHH
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLM-NSKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLA 254 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L-~~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~ 254 (1396)
..+.-++++||||.... .....+ ++.+.++ .....|.. ..+.
T Consensus 316 -~~p~LkvILMSAT~dae--------------~fs~YF~~~pvi~i--------------------~grtfpV~--~~fL 358 (924)
T KOG0920|consen 316 -RNPDLKVILMSATLDAE--------------LFSDYFGGCPVITI--------------------PGRTFPVK--EYFL 358 (924)
T ss_pred -hCCCceEEEeeeecchH--------------HHHHHhCCCceEee--------------------cCCCcchH--HHHH
Confidence 12445799999997421 111111 1222221 11111211 1111
Q ss_pred H-HHHHHHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHH
Q 000607 255 D-ELAMIELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIK 333 (1396)
Q Consensus 255 ~-~l~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 333 (1396)
+ .+.... +........ .+ ....
T Consensus 359 EDil~~~~------------------------------------------------~~~~~~~~~--~~--~~~~----- 381 (924)
T KOG0920|consen 359 EDILSKTG------------------------------------------------YVSEDDSAR--SG--PERS----- 381 (924)
T ss_pred HHHHHHhc------------------------------------------------ccccccccc--cc--cccC-----
Confidence 1 111100 000000000 00 0000
Q ss_pred HHHHHHHHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhh-cCCCCeeEEEEechHHHHHHHHHHHHhhcC
Q 000607 334 KFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY-RGVEDIRCIIFVERVITAIVLQSLLSELLP 412 (1396)
Q Consensus 334 ~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p 412 (1396)
.+.... +. .|. . .-....+.+++... .......+|||-+.-.....+.+.|....+
T Consensus 382 -~~~~~~--~~-------~~~----------~---~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~ 438 (924)
T KOG0920|consen 382 -QLRLAR--LK-------LWE----------P---EIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLP 438 (924)
T ss_pred -cccccc--ch-------hcc----------c---cccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccc
Confidence 000000 00 000 0 01222333333332 234467899999999999999999986533
Q ss_pred CCC--CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCCCCcH---
Q 000607 413 RHC--TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDPSRTV--- 479 (1396)
Q Consensus 413 ~~~--~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~p~s~--- 479 (1396)
.-. .+-+..+|+. |+..+|+.+.+.--.|.-+|++||+++|.+|.|++|-+|| +||+-.+.
T Consensus 439 f~~~~~~~ilplHs~------~~s~eQ~~VF~~pp~g~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l 512 (924)
T KOG0920|consen 439 FADSLKFAILPLHSS------IPSEEQQAVFKRPPKGTRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCL 512 (924)
T ss_pred cccccceEEEecccc------CChHHHHHhcCCCCCCcchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchh
Confidence 311 2455666766 7999999999998899999999999999999999999999 57775543
Q ss_pred -------HHHHHhhhcccCCC-CcEEEEEecCCcchHHHHHHHHHHHHHHH----HHHHhc-----------cCCCCCCC
Q 000607 480 -------CSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKMR----KEVLSH-----------ASLPCSPL 536 (1396)
Q Consensus 480 -------~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~e~~m~----~~~~~~-----------~~~~~~~~ 536 (1396)
.+-.||+|||||-. |.++.+++....+.. ....+.-+.++ +.+++- .+...++.
T Consensus 513 ~~~wvSkAna~QR~GRAGRv~~G~cy~L~~~~~~~~~---~~~~q~PEilR~pL~~l~L~iK~l~~~~~~~fLskaldpP 589 (924)
T KOG0920|consen 513 LLSWVSKANAKQRRGRAGRVRPGICYHLYTRSRYEKL---MLAYQLPEILRTPLEELCLHIKVLEQGSIKAFLSKALDPP 589 (924)
T ss_pred heeeccccchHHhcccccCccCCeeEEeechhhhhhc---ccccCChHHHhChHHHhhheeeeccCCCHHHHHHHhcCCC
Confidence 34569999999965 788888875422211 11000111111 111111 11122222
Q ss_pred CCCCCCCcceeecCCCcEEcccchHHHHHHhhccCCCCCCCCCccEEEEeCCeEEE
Q 000607 537 NNHMYGEDFYHVESTGTIATLSSSVSLIYFYCSRLPSDGYFKPTPKFHINKEMGIC 592 (1396)
Q Consensus 537 ~~~~~~~~~y~v~stgA~lt~~~ai~~l~~yc~~lp~d~~~~~~p~~~i~~~~~~~ 592 (1396)
..+.-....-....-|| ++.+..++-|.++|++||-|.- .++..+-+..|.|
T Consensus 590 ~~~~v~~a~~~L~~iga-L~~~e~LT~LG~~la~lPvd~~---igK~ll~g~if~c 641 (924)
T KOG0920|consen 590 PADAVDLAIERLKQIGA-LDESEELTPLGLHLASLPVDVR---IGKLLLFGAIFGC 641 (924)
T ss_pred ChHHHHHHHHHHHHhcc-ccCcccchHHHHHHHhCCCccc---cchhheehhhccc
Confidence 22211111112333455 3556688889999999998763 3344333444555
No 148
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.71 E-value=6.6e-17 Score=173.70 Aligned_cols=153 Identities=24% Similarity=0.345 Sum_probs=107.2
Q ss_pred ccchHHHHHHHHHHhc--------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALK--------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~--------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
+.+|+||.+++..+.+ +++++.+|||||||.+++.++..+.. +++|+||+..|+.|+.+.+..+
T Consensus 2 ~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~--------~~l~~~p~~~l~~Q~~~~~~~~ 73 (184)
T PF04851_consen 2 YKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELAR--------KVLIVAPNISLLEQWYDEFDDF 73 (184)
T ss_dssp -EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHC--------EEEEEESSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhcccc--------ceeEecCHHHHHHHHHHHHHHh
Confidence 4699999999999994 46999999999999999987766532 7999999999999999999766
Q ss_pred cCCeEEEEeCCC--------CcccCCccchHH--hhccCcEEEecHHHHHHhHhhc-----------CccccceeEEEEe
Q 000607 92 TDLKVGKYWGDM--------GVDFWDGATWKE--EMSKHEVLVMTPQILLDGLRLS-----------YFKLNMIKVLILD 150 (1396)
Q Consensus 92 ~~~~v~~~~G~~--------~~~~~~~~~~~~--~~~~~~ViV~T~q~L~~~l~~~-----------~~~l~~i~llI~D 150 (1396)
..-......... .........|.. .....++++.|++.+....... .......++||+|
T Consensus 74 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~D 153 (184)
T PF04851_consen 74 GSEKYNFFEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIID 153 (184)
T ss_dssp STTSEEEEE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEE
T ss_pred hhhhhhhcccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEe
Confidence 543332221110 000111122322 2347899999999999776431 1234578999999
Q ss_pred ccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 151 ECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 151 EaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
||||+.+...|..++. ...+.+|+|||||.
T Consensus 154 EaH~~~~~~~~~~i~~-----------~~~~~~l~lTATp~ 183 (184)
T PF04851_consen 154 EAHHYPSDSSYREIIE-----------FKAAFILGLTATPF 183 (184)
T ss_dssp TGGCTHHHHHHHHHHH-----------SSCCEEEEEESS-S
T ss_pred hhhhcCCHHHHHHHHc-----------CCCCeEEEEEeCcc
Confidence 9999998655666665 23578999999995
No 149
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.68 E-value=3.7e-14 Score=175.47 Aligned_cols=125 Identities=22% Similarity=0.192 Sum_probs=99.7
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeEE
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKVG 97 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v~ 97 (1396)
+||||.+++..+..+ ++|+.++||+|||+++++.+..-+ +. ++.+++|+||+.|+.|.++.+.. +++++++
T Consensus 93 ~tp~qvQ~I~~i~l~~gvIAeaqTGeGKTLAf~LP~l~~a--L~---g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~ 167 (970)
T PRK12899 93 MVPYDVQILGAIAMHKGFITEMQTGEGKTLTAVMPLYLNA--LT---GKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTG 167 (970)
T ss_pred CChHHHHHhhhhhcCCCeEEEeCCCCChHHHHHHHHHHHH--hh---cCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 499999999999887 899999999999999998655322 21 23489999999999998887765 4689999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHH-HHhHhhcCcccc-------ceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-LDGLRLSYFKLN-------MIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-~~~l~~~~~~l~-------~i~llI~DEaH~~~~ 157 (1396)
.+.|+++... +...-.++|+|+||+.| .+.++.+.+.++ .+.++|+|||+.+.-
T Consensus 168 ~i~GG~~~~e------q~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~vqr~~~~~IIDEADsmLi 229 (970)
T PRK12899 168 VLVSGSPLEK------RKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQVGRGFYFAIIDEVDSILI 229 (970)
T ss_pred EEeCCCCHHH------HHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhhcccccEEEEechhhhhh
Confidence 9999865441 11122699999999999 999988766555 458999999998864
No 150
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.68 E-value=4.7e-14 Score=178.06 Aligned_cols=122 Identities=25% Similarity=0.359 Sum_probs=106.4
Q ss_pred HHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe
Q 000607 370 EKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV 449 (1396)
Q Consensus 370 ~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~ 449 (1396)
.++..|++.|..+. ..+.++||||+++..++.|...|.+. ++++.++||. |++.+|.++++.|+.|++
T Consensus 430 ~q~~~L~~~L~~~~-~~g~~viIf~~t~~~ae~L~~~L~~~-----gi~~~~~h~~------~~~~~R~~~l~~f~~g~i 497 (652)
T PRK05298 430 GQVDDLLSEIRKRV-AKGERVLVTTLTKRMAEDLTDYLKEL-----GIKVRYLHSD------IDTLERVEIIRDLRLGEF 497 (652)
T ss_pred ccHHHHHHHHHHHH-hCCCEEEEEeCCHHHHHHHHHHHhhc-----ceeEEEEECC------CCHHHHHHHHHHHHcCCc
Confidence 35666777776653 46789999999999999999999974 7899999997 599999999999999999
Q ss_pred eEEEEecccccccCCCcccEEEEeCC-----CCcHHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 450 NVIVATSILEEGLDVQSCNLVIMFDP-----SRTVCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 450 nvLVaTsvleeGiDIp~~~lVI~fD~-----p~s~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
+|||||+++++|+|+|++++||++|. |.+..+|+||+||+||.. |.++++++..
T Consensus 498 ~vlV~t~~L~rGfdlp~v~lVii~d~eifG~~~~~~~yiqr~GR~gR~~~G~~i~~~~~~ 557 (652)
T PRK05298 498 DVLVGINLLREGLDIPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYADKI 557 (652)
T ss_pred eEEEEeCHHhCCccccCCcEEEEeCCcccccCCCHHHHHHHhccccCCCCCEEEEEecCC
Confidence 99999999999999999999999885 789999999999999965 5677777643
No 151
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.67 E-value=6.8e-15 Score=172.84 Aligned_cols=314 Identities=18% Similarity=0.170 Sum_probs=197.0
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
..|-.++++.+.++ -+||.++||||||.. |..++....-....++-+--|.|.-|...++.+....+-+.|.-.|
T Consensus 53 ~~~r~~il~~ve~nqvlIviGeTGsGKSTQ----ipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VG 128 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQVLIVIGETGSGKSTQ----IPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVG 128 (674)
T ss_pred HHHHHHHHHHHHHCCEEEEEcCCCCCcccc----HhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceee
Confidence 45555677776666 488999999999887 3333322211223337777799877766666666554433333332
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCC
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLP 181 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p 181 (1396)
-. + ..-+..-...+|.++|-++|++-+.... .++++++||+||||.-. -...++-+++...++. ...-
T Consensus 129 Y~-I-----RFed~ts~~TrikymTDG~LLRE~l~Dp-~LskYsvIIlDEAHERs---l~TDiLlGlLKki~~~--R~~L 196 (674)
T KOG0922|consen 129 YT-I-----RFEDSTSKDTRIKYMTDGMLLREILKDP-LLSKYSVIILDEAHERS---LHTDILLGLLKKILKK--RPDL 196 (674)
T ss_pred eE-E-----EecccCCCceeEEEecchHHHHHHhcCC-ccccccEEEEechhhhh---hHHHHHHHHHHHHHhc--CCCc
Confidence 10 0 0011122368899999999997654333 36899999999999643 3345666666544222 1123
Q ss_pred eEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHH
Q 000607 182 RIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMI 260 (1396)
Q Consensus 182 ~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l 260 (1396)
|++.||||.. ...+.+.++. .+.++. ....|. .+.|...+.+
T Consensus 197 klIimSATld--------------a~kfS~yF~~a~i~~i~-------GR~fPV--ei~y~~~p~~-------------- 239 (674)
T KOG0922|consen 197 KLIIMSATLD--------------AEKFSEYFNNAPILTIP-------GRTFPV--EILYLKEPTA-------------- 239 (674)
T ss_pred eEEEEeeeec--------------HHHHHHHhcCCceEeec-------CCCCce--eEEeccCCch--------------
Confidence 8999999982 3334444433 333331 111111 1222221110
Q ss_pred HHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHH
Q 000607 261 ELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDAS 340 (1396)
Q Consensus 261 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 340 (1396)
.|+..+.
T Consensus 240 -------------------------------------------------------------------------dYv~a~~ 246 (674)
T KOG0922|consen 240 -------------------------------------------------------------------------DYVDAAL 246 (674)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0111111
Q ss_pred HHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCC-Cc--
Q 000607 341 QALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHC-TW-- 417 (1396)
Q Consensus 341 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~-~~-- 417 (1396)
.. .+++ +...+..-++||-...+..+...+.|.+...... +.
T Consensus 247 ~t--------------------------------v~~I---h~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~ 291 (674)
T KOG0922|consen 247 IT--------------------------------VIQI---HLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPE 291 (674)
T ss_pred HH--------------------------------HHHH---HccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcc
Confidence 11 1111 1113455799999999999999999987632211 11
Q ss_pred eeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEE--------EeCC----------CCcH
Q 000607 418 KTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVI--------MFDP----------SRTV 479 (1396)
Q Consensus 418 ~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI--------~fD~----------p~s~ 479 (1396)
.+..++|. |+.++|.++.+.--.|.-+|++||+++|..|.||.+.+|| .|++ |-|.
T Consensus 292 ~~lply~a------L~~e~Q~rvF~p~p~g~RKvIlsTNIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISk 365 (674)
T KOG0922|consen 292 LILPLYGA------LPSEEQSRVFDPAPPGKRKVILSTNIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISK 365 (674)
T ss_pred eeeeeccc------CCHHHhhccccCCCCCcceEEEEcceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechH
Confidence 34567776 6999999998888889999999999999999999999999 4554 5577
Q ss_pred HHHHHhhhcccCCC-CcEEEEEecC
Q 000607 480 CSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 480 ~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
.+-.||.|||||.| |+++-+.++.
T Consensus 366 asA~QRaGRAGRt~pGkcyRLYte~ 390 (674)
T KOG0922|consen 366 ASANQRAGRAGRTGPGKCYRLYTES 390 (674)
T ss_pred HHHhhhcccCCCCCCceEEEeeeHH
Confidence 88999999999988 7899998744
No 152
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.67 E-value=4.2e-14 Score=190.10 Aligned_cols=445 Identities=17% Similarity=0.141 Sum_probs=247.3
Q ss_pred ccchHHHHHHHHHHh---c---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-
Q 000607 20 PFARNYQLEALENAL---K---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT- 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l---~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~- 92 (1396)
..+|+||.+.++... . .+.|++.++|.|||+.++.++.+..+.... ..+..+++||+ +++.+|.+++.++.
T Consensus 337 ~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~-~~~~~liv~p~-s~~~nw~~e~~k~~~ 414 (866)
T COG0553 337 AELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKV-YLGPALIVVPA-SLLSNWKREFEKFAP 414 (866)
T ss_pred hhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccC-CCCCeEEEecH-HHHHHHHHHHhhhCc
Confidence 458999999998755 2 379999999999999999887663332221 24579999999 88899999999887
Q ss_pred CCe-EEEEeCCCCcccCCccchHHhhcc-----CcEEEecHHHHHHh-HhhcCccccceeEEEEeccccccCCCcHHHHH
Q 000607 93 DLK-VGKYWGDMGVDFWDGATWKEEMSK-----HEVLVMTPQILLDG-LRLSYFKLNMIKVLILDECHHARGKHQYACIM 165 (1396)
Q Consensus 93 ~~~-v~~~~G~~~~~~~~~~~~~~~~~~-----~~ViV~T~q~L~~~-l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im 165 (1396)
.++ +..++|...............+.. .+|+++|++.+... ..++.+.-..++.+|+||||++++..+-...-
T Consensus 415 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~~~~~~l~~~~~~~~v~DEa~~ikn~~s~~~~~ 494 (866)
T COG0553 415 DLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFLVDHGGLKKIEWDRVVLDEAHRIKNDQSSEGKA 494 (866)
T ss_pred cccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhhhhHHHHhhceeeeeehhhHHHHhhhhhHHHHH
Confidence 466 788888743100011122222222 79999999999873 23445666789999999999988754333222
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhC----CeEEeccChhhhcccccCCcceeEecc
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMN----SKVYTCASESVLSNFIPFSTAKFKFYK 241 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~----~~i~~~~~~~~l~~~~~~~~~~~~~y~ 241 (1396)
..+.+ ....+.||+||..+ .+.+|-++++ ...... ....+......|........
T Consensus 495 l~~~~---------~~~~~~LtgTPlen-----------~l~eL~sl~~~f~~p~~~~~-~~~~f~~~~~~~~~~~~~~~ 553 (866)
T COG0553 495 LQFLK---------ALNRLDLTGTPLEN-----------RLGELWSLLQEFLNPGLLGT-SFAIFTRLFEKPIQAEEDIG 553 (866)
T ss_pred HHHHh---------hcceeeCCCChHhh-----------hHHHHHHHHHHHhCCccccc-hHHHHHHHHhhhhhhccccc
Confidence 22332 23459999999543 2444444444 222221 13344444444333222211
Q ss_pred CCCCchhhHHHHHHHHHHHHHHHHhhhhhhchhhHHH---HHH---------HHHHHHHHHHHHH----HHHhHHHHHHH
Q 000607 242 YDEIPHALYTHLADELAMIELKHTRSLENLDLNEAQA---ELI---------RKKVSKINSTLLY----CLSELGVWLAL 305 (1396)
Q Consensus 242 ~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~~~~~---~~~---------~~~~~~~~~~~~~----~~~~lg~~~a~ 305 (1396)
. ..........+..+..++ .++........+ +.. ...-..++..... ....+...
T Consensus 554 ~----~~~~~~~~~~l~~~i~~f--~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~--- 624 (866)
T COG0553 554 P----LEARELGIELLRKLLSPF--ILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDL--- 624 (866)
T ss_pred c----hhhHHHHHHHHHHHHHHH--hhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHH---
Confidence 1 000000011121222222 111100000000 000 0000001110000 00000000
Q ss_pred HHHHHhhccccchhhhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccC-CCCcc-------------c--CCCCCcc
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIG-DDSKF-------------N--LDSGLLT 369 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~-~~~~~-------------~--~~~~~~s 369 (1396)
.....+....+ . ....+......+++.+.....+... ..... . -.....+
T Consensus 625 ------~~~~~~~~~~~--~------~~~~~l~~~~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 690 (866)
T COG0553 625 ------EKADSDENRIG--D------SELNILALLTRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLS 690 (866)
T ss_pred ------Hhhcccccccc--c------hhhHHHHHHHHHHHhccCccccccccccccchhhhhhhcccccccccchhhhcc
Confidence 00000000000 0 0000011111112222111000000 00000 0 0011224
Q ss_pred -HHHHHHHHHH-hhhcCCCCe--eEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh
Q 000607 370 -EKIVCLIESL-LEYRGVEDI--RCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR 445 (1396)
Q Consensus 370 -~Kv~~L~~~L-~~~~~~~~~--k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr 445 (1396)
.|...+.++| .... ..+. +++||++...+...+...+... ++....+.|+. +.+.|.+.+++|.
T Consensus 691 ~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l~il~~~l~~~-----~~~~~~ldG~~------~~~~r~~~i~~f~ 758 (866)
T COG0553 691 KGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVLDLLEDYLKAL-----GIKYVRLDGST------PAKRRQELIDRFN 758 (866)
T ss_pred chHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHHHHHHHHHHhc-----CCcEEEEeCCC------ChhhHHHHHHHhh
Confidence 7888888888 4432 3455 9999999999999999999974 47788999984 7899999999999
Q ss_pred cC--CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEecCCcchHHHHHHHHHHHH
Q 000607 446 RG--LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVKSGDSTTQSRLENYLASGN 519 (1396)
Q Consensus 446 ~g--~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~~~~~~~~~~i~~~~~~e~ 519 (1396)
++ ..-++++|.+++.|+|+..++.||.||+.||+....|+..||.|.|+ .++-++.++ ...+++-.......
T Consensus 759 ~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~wnp~~~~Qa~dRa~RigQ~~~v~v~r~i~~~--tiEe~i~~~~~~K~ 836 (866)
T COG0553 759 ADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWWNPAVELQAIDRAHRIGQKRPVKVYRLITRG--TIEEKILELQEKKQ 836 (866)
T ss_pred cCCCCceEEEEecccccceeecccceEEEeccccChHHHHHHHHHHHHhcCcceeEEEEeecCC--cHHHHHHHHHHHHH
Confidence 86 45577788999999999999999999999999999999999999886 355555555 33344444444444
Q ss_pred HHHHH
Q 000607 520 KMRKE 524 (1396)
Q Consensus 520 ~m~~~ 524 (1396)
.+...
T Consensus 837 ~l~~~ 841 (866)
T COG0553 837 ELLDS 841 (866)
T ss_pred HHHHH
Confidence 44443
No 153
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.66 E-value=2.8e-15 Score=191.90 Aligned_cols=95 Identities=25% Similarity=0.327 Sum_probs=80.2
Q ss_pred CCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh----cCCeeEEEEeccccc
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR----RGLVNVIVATSILEE 460 (1396)
Q Consensus 385 ~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr----~g~~nvLVaTsvlee 460 (1396)
.++.+++|-|||+..|..++..|+.. +.++..+||. ++.++|.+.++.++ .+...|+|||+|.|.
T Consensus 438 ~~~~kvlvI~NTV~~Aie~Y~~Lk~~-----~~~v~LlHSR------f~~~dR~~ke~~l~~~~~~~~~~IvVaTQVIEa 506 (733)
T COG1203 438 KEGKKVLVIVNTVDRAIELYEKLKEK-----GPKVLLLHSR------FTLKDREEKERELKKLFKQNEGFIVVATQVIEA 506 (733)
T ss_pred ccCCcEEEEEecHHHHHHHHHHHHhc-----CCCEEEEecc------cchhhHHHHHHHHHHHHhccCCeEEEEeeEEEE
Confidence 46789999999999999999999964 2268899997 57788887777544 578899999999999
Q ss_pred ccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 461 GLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 461 GiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
|+|+ +++++|. -+....+.|||.||..|.|
T Consensus 507 gvDi-dfd~mIT--e~aPidSLIQR~GRv~R~g 536 (733)
T COG1203 507 GVDI-DFDVLIT--ELAPIDSLIQRAGRVNRHG 536 (733)
T ss_pred Eecc-ccCeeee--cCCCHHHHHHHHHHHhhcc
Confidence 9999 5888876 5556789999999998877
No 154
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.66 E-value=2.9e-14 Score=175.82 Aligned_cols=124 Identities=22% Similarity=0.264 Sum_probs=104.7
Q ss_pred ccchHHHHHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 20 PFARNYQLEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
..+.+-|..+++.+... ..++.+.||||||.+++-+|...+. .||.+|||||-.+|-.|..+.|+..++.
T Consensus 197 ~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~-----~GkqvLvLVPEI~Ltpq~~~rf~~rFg~ 271 (730)
T COG1198 197 LALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLA-----QGKQVLVLVPEIALTPQLLARFKARFGA 271 (730)
T ss_pred cccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHH-----cCCEEEEEeccccchHHHHHHHHHHhCC
Confidence 45788899999888764 3999999999999999988876654 5789999999999999999999999999
Q ss_pred eEEEEeCCCCcccCCccchHHhh-ccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEM-SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~-~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
++..++++.+... ....|.+.. ...+|||+|-.-+ |..+.++.|||+||=|-..
T Consensus 272 ~v~vlHS~Ls~~e-r~~~W~~~~~G~~~vVIGtRSAl-------F~Pf~~LGLIIvDEEHD~s 326 (730)
T COG1198 272 KVAVLHSGLSPGE-RYRVWRRARRGEARVVIGTRSAL-------FLPFKNLGLIIVDEEHDSS 326 (730)
T ss_pred ChhhhcccCChHH-HHHHHHHHhcCCceEEEEechhh-------cCchhhccEEEEecccccc
Confidence 9999999865432 335688777 4799999998765 6678899999999999776
No 155
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=99.64 E-value=2.2e-15 Score=158.81 Aligned_cols=225 Identities=20% Similarity=0.244 Sum_probs=179.8
Q ss_pred ChhhHHhHHHHHHHcC-cccCCHHHHHHHhccCCCCCC----------------CCCCccchhhhhhHHHhHHHHHHHHH
Q 000607 1144 HAERLVNVRHLESLLN-YSFRDPSLLVEALTHGSYMLP----------------EIPRCYQRLEFLGDAVLDYLITVYLY 1206 (1396)
Q Consensus 1144 ~~~~~~~~~~le~~lg-y~f~~~~ll~~Alth~S~~~~----------------~~~~~yerLEfLGDavL~~~v~~~l~ 1206 (1396)
+......+..++++|| -.| ..+.+..|||.+|+... ....+|+-|--.|..++++.|++||-
T Consensus 58 ~W~~~sel~afg~RL~~~~i-s~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~ 136 (333)
T KOG3769|consen 58 NWDYNSELSAFGKRLQSEEI-SLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLK 136 (333)
T ss_pred CcchhHHHHHHHHHhccccc-cHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHH
Confidence 3344566899999999 555 67889999999998641 22478999999999999999999999
Q ss_pred HhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhccCCCCCcccccCCChhhHHHH
Q 000607 1207 NKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDII 1286 (1396)
Q Consensus 1207 ~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~d~~ 1286 (1396)
.+||.++...++.+-+.+++.++||.+|..+|+.++++..+-....+ ....+...+++
T Consensus 137 ~kyPrlP~E~l~ai~n~ll~ee~LahiAt~lGie~l~~seeFp~~~e----------------------isq~ess~~aI 194 (333)
T KOG3769|consen 137 CKYPRLPEEGLHAIVNGLLGEEVLAHIATHLGIEELGLSEEFPKVGE----------------------ISQDESSRRAI 194 (333)
T ss_pred HhccCCcHHHHHHHHHHhhhHHHHHHHHHHhhHHHHhhcccCCCchh----------------------hhHHHHHHHHH
Confidence 99999999999999999999999999999999998877655332211 11225678888
Q ss_pred HHHhhheeeecCCChHHHHHHhhhcc-ccccCccc--ccCCchhHHHHHHHhcCCCCCcceeeccCC----ceEEEEEEE
Q 000607 1287 ESLAGAIFVDSGCNREVVFQSIRPLL-EPMITPET--MRFHPVRELTEYCQKNHFSMKKPVASRISG----KAAVTVEVQ 1359 (1396)
Q Consensus 1287 EA~iGAi~~d~g~~~~~~~~~~~~~l-~~~~~~~~--~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g----~~~~~~~v~ 1359 (1396)
-|++|+++...|++ .|.+|+.+.+ ..-+++.. ...+|.+.|.++|++.|.+-+.++...+.| .+.|.|+||
T Consensus 195 ~Al~~~~~~ek~~~--~v~dFI~~qi~~k~L~~~~m~ql~~P~~~L~~lckr~~l~epe~Rll~esGr~S~~PvyvVgiY 272 (333)
T KOG3769|consen 195 GALLGSVGLEKGFN--FVRDFINDQILSKDLDPREMWQLQWPRRLLSRLCKRRGLKEPESRLLAESGRNSAEPVYVVGIY 272 (333)
T ss_pred HHHHhcccHHHHHH--HHHHHHHHHhhhhccchHhhccccchHHHHHHHHHHcCCCCchhHHHHHhccCccCceEEEEee
Confidence 99999988877763 4555554432 22233211 237999999999999999888788777766 346999999
Q ss_pred ECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1360 ANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1360 v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
.|.+.+| .|.|.|.+.|+..||..||.+|-...|
T Consensus 273 s~kkllG-qG~Gesl~~A~e~AA~dAL~k~y~~tp 306 (333)
T KOG3769|consen 273 SGKKLLG-QGQGESLKLAEEQAARDALIKLYDHTP 306 (333)
T ss_pred cCchhhc-cCcchHHHHHHHHHHHHHHHHHHcCCh
Confidence 9999998 899999999999999999999876654
No 156
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=99.61 E-value=1e-13 Score=174.88 Aligned_cols=375 Identities=13% Similarity=0.113 Sum_probs=211.4
Q ss_pred cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCc
Q 000607 119 KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSS 198 (1396)
Q Consensus 119 ~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~ 198 (1396)
...|+++||++|.+.+-.+.+.+++++.|||||||++.+++.|.-|++.|.. .++.+.|.|+||+|..-..
T Consensus 7 ~ggi~~~T~rIl~~DlL~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~------~n~~gfIkafSdsP~~~~~--- 77 (814)
T TIGR00596 7 EGGIFSITSRILVVDLLTGIIPPELITGILVLRADRIIESSQEAFILRLYRQ------KNKTGFIKAFSDNPEAFTM--- 77 (814)
T ss_pred cCCEEEEechhhHhHHhcCCCCHHHccEEEEeecccccccccHHHHHHHHHH------hCCCcceEEecCCCccccc---
Confidence 5789999999999999999999999999999999999999999999987763 3567899999999986321
Q ss_pred hhhHHHHHHHHHHHhCCeEEe--ccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHHHHHHhhhhhhchh--
Q 000607 199 EQDYWQKIHDLETLMNSKVYT--CASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIELKHTRSLENLDLN-- 274 (1396)
Q Consensus 199 ~~~~~~~i~~Le~~L~~~i~~--~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~~~~l~~~~~~-- 274 (1396)
-...+.++...|+-+-.. .....++..+...-... +.+-...+|..+.. +...+....+.+...|+..+..
T Consensus 78 ---g~~~l~~vmk~L~i~~v~l~prf~~~V~~~l~~~~~~-V~ei~V~l~~~m~~-Iq~~l~~~l~~~l~eLkr~n~~ld 152 (814)
T TIGR00596 78 ---GFSPLETKMRNLFLRHVYLWPRFHVEVASSLEKHKAE-VIELHVSLTDSMSQ-IQSAILECLNKCIAELKRKNPELD 152 (814)
T ss_pred ---chHHHHHHHHHhCcCeEEEeCCCchHHHHHhccCCCe-EEEEEeCCCHHHHH-HHHHHHHHHHHHHHHHHHhCCCCC
Confidence 113577777777755333 34556666666542112 22223345555443 5555555555555555443211
Q ss_pred hHHHH-----------HHHHHH-----------HHHHH------HHHHHHHhHHHHHHHHHHH-Hhhccc----c--chh
Q 000607 275 EAQAE-----------LIRKKV-----------SKINS------TLLYCLSELGVWLALKAAE-TISCYE----S--DFF 319 (1396)
Q Consensus 275 ~~~~~-----------~~~~~~-----------~~~~~------~~~~~~~~lg~~~a~~~~~-~~~~~~----~--~~~ 319 (1396)
...+. ..+.++ +++.. .....+...+.-...+..+ .+.... . ...
T Consensus 153 ~~dl~~en~l~~~F~~~i~~qL~~~wh~~~~~tkqlv~Dl~~Lr~ll~~L~t~D~vtF~~yL~~~l~~~~~~~~sk~~~S 232 (814)
T TIGR00596 153 MEDWNLENALTKSFDRIIRRQLDPNWHRLSYKTKQLVGDLKILRHLLQSLVTYDAVSFLGLLDTSLRANKPAVSRKYSES 232 (814)
T ss_pred HHHhHHhhhhhhhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccccccccCC
Confidence 00000 001111 11111 1111111111111111111 100000 0 000
Q ss_pred hhhhcccchHHHHHHHHHHHHHHHHHhccCCCccccCCCCcccCCCC-CccHHHHHHHHHHhhhcC--------CCCeeE
Q 000607 320 AWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSG-LLTEKIVCLIESLLEYRG--------VEDIRC 390 (1396)
Q Consensus 320 ~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~~s~Kv~~L~~~L~~~~~--------~~~~k~ 390 (1396)
.|--. +.....+..+...+-. ... ......... ...||...|.++|.+... .++.++
T Consensus 233 ~Wl~~-----daa~~lf~~ak~Rvy~--~~~-------~~~~~~e~~lEe~PKw~~L~eiL~eI~~~~~~~~~~~~~~~i 298 (814)
T TIGR00596 233 PWLLL-----DAAQLIFSYARQRVYY--EGE-------GPNMKNEPVLEENPKWEVLTDVLKEISHEMRMTNRLQGPGKV 298 (814)
T ss_pred cchhh-----HHHHHHHHHHHHHHhc--ccc-------ccccccccCcccCCCHHHHHHHHHHHHhHHhhhcccCCCCcE
Confidence 00000 0111222222221110 000 000001111 248999999999977321 346789
Q ss_pred EEEechHHHHHHHHHHHHhhcCCCCCceeeEEe----------cCC----------------------------------
Q 000607 391 IIFVERVITAIVLQSLLSELLPRHCTWKTKYIA----------GNN---------------------------------- 426 (1396)
Q Consensus 391 IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~----------G~~---------------------------------- 426 (1396)
||||+.+.|+..|.++|....-. .+. ..++. |..
T Consensus 299 LI~~~d~~T~~qL~~~L~~~~~~-~~~-~~fm~~~l~~y~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kr 376 (814)
T TIGR00596 299 LIMCSDNRTCLQLRDYLTTSNKK-RGS-RAFLLNKLRWYRKWREETSKLAKEVQSQDTFPENASSNVNKTFRKEQVPTKR 376 (814)
T ss_pred EEEEcchHHHHHHHHHHHhcccc-ccH-HHHHHHHHHHHHhhhhhhhhhhHhhhhccccccccccccccccccccccccc
Confidence 99999999999999988650000 000 00000 000
Q ss_pred CCcCCCCHHHHHHHHHHHhcCCee---------EE-----------------------EEecccccccCCCc--------
Q 000607 427 SGIQCQSRKKQNEIVEEFRRGLVN---------VI-----------------------VATSILEEGLDVQS-------- 466 (1396)
Q Consensus 427 ~~~~~ms~~~r~~~l~~Fr~g~~n---------vL-----------------------VaTsvleeGiDIp~-------- 466 (1396)
....||+++ .+.+||.|+.+ ++ |+|++.++|+|+|.
T Consensus 377 rr~rG~s~~----~~~~~r~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~d~~~~~~~~~~~ 452 (814)
T TIGR00596 377 RRVRGGSEV----AVEKLRNANTNDMQHFEEDHELEEEGDDLEDGPAQEINAANDSKIFEIIDEENDIDIYSGAEFDNLP 452 (814)
T ss_pred cccccchhH----HHhhhcccccccccccchhhhhhhhhhhhccccccccccccccccccccccccccccchhhcccccc
Confidence 001123222 26778777665 44 78999999999998
Q ss_pred --------------c----------cEEEEeCCCCcHHHHHH--hhhcccCCCCcEEEEEecCCcchHHHHHHHHHHHHH
Q 000607 467 --------------C----------NLVIMFDPSRTVCSFIQ--SRGRARMQNSDYLLMVKSGDSTTQSRLENYLASGNK 520 (1396)
Q Consensus 467 --------------~----------~lVI~fD~p~s~~~yiQ--r~GRA~R~gs~~i~lv~~~~~~~~~~i~~~~~~e~~ 520 (1396)
+ ++||.||+-.+...-+| |.||.+|.+ ++++|+..+. ...+.+-..++.|+.
T Consensus 453 ~~~i~~~~~~~~~~~~~~~L~e~~P~~VImYEP~~sfIR~IEvyra~r~~r~~-rVyfL~y~~S-~EEq~yl~sirrEK~ 530 (814)
T TIGR00596 453 QHITHFLWGERDEYVLRCSLEELMPRYVIMYEPDISFIRQLEVYKASRPLRPL-RVYFLYYGGS-IEEQRYLTSLRREKD 530 (814)
T ss_pred ceeeeecccccchhhHHHHHhhhCCCEEEEECCChHHHHHHHHHHccCCCCCc-EEEEEEECCc-HHHHHHHHHHHHHHH
Confidence 5 89999999999999999 999999884 4555555443 334455556677888
Q ss_pred HHHHHHhcc
Q 000607 521 MRKEVLSHA 529 (1396)
Q Consensus 521 m~~~~~~~~ 529 (1396)
|-+..++..
T Consensus 531 AFe~LIrek 539 (814)
T TIGR00596 531 AFTKLIREK 539 (814)
T ss_pred HHHHHHHHH
Confidence 877766653
No 157
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.58 E-value=4.6e-13 Score=152.48 Aligned_cols=119 Identities=26% Similarity=0.379 Sum_probs=100.9
Q ss_pred HHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCee
Q 000607 371 KIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVN 450 (1396)
Q Consensus 371 Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~n 450 (1396)
.+.-|++-+..- ...+.|++|-+=++.+|+.|.++|.+. |+++.++|++. ..-+|.+++++.|.|++.
T Consensus 431 QvdDL~~EI~~r-~~~~eRvLVTtLTKkmAEdLT~Yl~e~-----gikv~YlHSdi------dTlER~eIirdLR~G~~D 498 (663)
T COG0556 431 QVDDLLSEIRKR-VAKNERVLVTTLTKKMAEDLTEYLKEL-----GIKVRYLHSDI------DTLERVEIIRDLRLGEFD 498 (663)
T ss_pred cHHHHHHHHHHH-HhcCCeEEEEeehHHHHHHHHHHHHhc-----CceEEeeeccc------hHHHHHHHHHHHhcCCcc
Confidence 344444444432 346799999999999999999999984 99999999985 778999999999999999
Q ss_pred EEEEecccccccCCCcccEEEEeCC-----CCcHHHHHHhhhcccCCC-CcEEEEEe
Q 000607 451 VIVATSILEEGLDVQSCNLVIMFDP-----SRTVCSFIQSRGRARMQN-SDYLLMVK 501 (1396)
Q Consensus 451 vLVaTsvleeGiDIp~~~lVI~fD~-----p~s~~~yiQr~GRA~R~g-s~~i~lv~ 501 (1396)
|||.-+.+-||+|+|.|.+|..+|. ..|.++.||-+|||.|.- |++++..+
T Consensus 499 vLVGINLLREGLDiPEVsLVAIlDADKeGFLRse~SLIQtIGRAARN~~GkvIlYAD 555 (663)
T COG0556 499 VLVGINLLREGLDLPEVSLVAILDADKEGFLRSERSLIQTIGRAARNVNGKVILYAD 555 (663)
T ss_pred EEEeehhhhccCCCcceeEEEEeecCccccccccchHHHHHHHHhhccCCeEEEEch
Confidence 9999999999999999999999986 458899999999999865 56555544
No 158
>cd02843 PAZ_dicer_like PAZ domain, dicer_like subfamily. Dicer is an RNAse involved in cleaving dsRNA in the RNA interference pathway. It generates dsRNAs which are approximately 20 bp long (siRNAs), which in turn target hydrolysis of homologous RNAs. PAZ domains are named after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=99.58 E-value=1.9e-15 Score=141.48 Aligned_cols=109 Identities=16% Similarity=0.215 Sum_probs=87.1
Q ss_pred ccCceeeeeecccCCCCCCCCCCcccccccccccccCCCcccccccCcEEecCcCC----eeEEEEeecCCCCCCCcCcc
Q 000607 790 LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCTPHNG----QIYCITGVLGHLNANSLFTR 865 (1396)
Q Consensus 790 ~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~----~~Y~v~~i~~dl~p~s~~~~ 865 (1396)
.|||.+++.+.+.....+. .. .. .......+.++++.|++|+++|+| ++|.|.+|++|++|.|+|+.
T Consensus 6 ~iDw~~~~~i~~~~~~~p~--~~-~~------~~r~~~~f~~~~~~g~vV~t~YnN~d~pK~Y~V~dI~~dltP~S~F~~ 76 (122)
T cd02843 6 DIDWEFMEKIEANARIGPR--AT-PD------EARQPFKFDAEDYQDAVVMPWYRNFDQPQYFYVAEICTDLRPLSKFPG 76 (122)
T ss_pred eechhHHHHHhhhcccCCC--CC-hh------HHhhcCCCCHHHhCCCEEeecccCCCCCeEEEEEEEcCCCCCCCCCCC
Confidence 6999999975422210001 00 00 012345678899999999999998 79999999999999999975
Q ss_pred CCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhh
Q 000607 866 NNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCR 909 (1396)
Q Consensus 866 ~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~ 909 (1396)
. ++.||.+||+.|||+.|.+.+||||+++.++.+.|||+|+.
T Consensus 77 ~--~~~Ty~eYyk~KY~I~I~~~~QPLL~v~~~s~~lNll~pr~ 118 (122)
T cd02843 77 P--EYETFEEYYKKKYKLDIQNLNQPLLDVDHTSTRLNLLTPRY 118 (122)
T ss_pred C--CCccHHHHHHHhcCeEeccCCCCcEeecCccccccccCccc
Confidence 3 37899999999999999999999999999999999999864
No 159
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.58 E-value=2.8e-14 Score=155.11 Aligned_cols=160 Identities=29% Similarity=0.331 Sum_probs=121.8
Q ss_pred cccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---
Q 000607 19 LPFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD--- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~--- 93 (1396)
...++++|.+++..+... ++++.++||+|||.+++..+.+... ....+++++++|++.++.||.+.+.....
T Consensus 6 ~~~~~~~Q~~~~~~~~~~~~~~~i~~~~GsGKT~~~~~~~~~~~~---~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 6 FEPLRPYQKEAIEALLSGLRDVILAAPTGSGKTLAALLPALEALK---RGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCHHHHHHHHHHHcCCCcEEEECCCCCchhHHHHHHHHHHhc---ccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 455899999999999984 7999999999999987776654422 22356799999999999999999998763
Q ss_pred -CeEEEEeCCCCcccCCccchHHhhccC-cEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHh
Q 000607 94 -LKVGKYWGDMGVDFWDGATWKEEMSKH-EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 94 -~~v~~~~G~~~~~~~~~~~~~~~~~~~-~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~ 171 (1396)
.....+.|... ...|....... +|+++|++.+.+.+........+++++|+||||++... .+...+..+...
T Consensus 83 ~~~~~~~~~~~~-----~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~~~~~~~~~iIiDE~h~~~~~-~~~~~~~~~~~~ 156 (201)
T smart00487 83 LKVVGLYGGDSK-----REQLRKLESGKTDILVTTPGRLLDLLENDLLELSNVDLVILDEAHRLLDG-GFGDQLEKLLKL 156 (201)
T ss_pred eEEEEEeCCcch-----HHHHHHHhcCCCCEEEeChHHHHHHHHcCCcCHhHCCEEEEECHHHHhcC-CcHHHHHHHHHh
Confidence 33444444321 24455555555 99999999999998877677788999999999999864 455555555532
Q ss_pred hccCCCCCCCeEEEEeccCCC
Q 000607 172 LLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~ 192 (1396)
....++++++||||..
T Consensus 157 -----~~~~~~~v~~saT~~~ 172 (201)
T smart00487 157 -----LPKNVQLLLLSATPPE 172 (201)
T ss_pred -----CCccceEEEEecCCch
Confidence 1346789999999974
No 160
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=8.3e-13 Score=164.05 Aligned_cols=122 Identities=16% Similarity=0.157 Sum_probs=105.4
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
..|...+++.+.... ..+.++||||+++..++.|+++|.. .+++...+|+ .+.+|+..+.+|+.+.
T Consensus 581 ~eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~-----~gI~h~vLna--------kq~~REa~Iia~AG~~ 646 (1025)
T PRK12900 581 REKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRA-----KRIAHNVLNA--------KQHDREAEIVAEAGQK 646 (1025)
T ss_pred HHHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHH-----cCCCceeecC--------CHHHhHHHHHHhcCCC
Confidence 568899999887742 4678999999999999999999997 4888889986 4578999999999999
Q ss_pred eeEEEEecccccccCCC---ccc-----EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecCC
Q 000607 449 VNVIVATSILEEGLDVQ---SCN-----LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSGD 504 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp---~~~-----lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~~ 504 (1396)
..|+|||+++++|+||+ .+. +||.++.|.|.+.|.|++||+||.| |..+.+++.+|
T Consensus 647 g~VtIATNMAGRGtDIkl~~~V~~vGGL~VIgterhes~Rid~Ql~GRtGRqGdpGsS~ffvSleD 712 (1025)
T PRK12900 647 GAVTIATNMAGRGTDIKLGEGVRELGGLFILGSERHESRRIDRQLRGRAGRQGDPGESVFYVSLED 712 (1025)
T ss_pred CeEEEeccCcCCCCCcCCccchhhhCCceeeCCCCCchHHHHHHHhhhhhcCCCCcceEEEechhH
Confidence 99999999999999999 443 3499999999999999999999998 56777776543
No 161
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.56 E-value=1.8e-13 Score=158.39 Aligned_cols=313 Identities=17% Similarity=0.122 Sum_probs=188.0
Q ss_pred HHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 24 NYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
..+.+++..+.+++ +||+++||||||.+-. +.+++ ..-.....+-+--|.+.-+...+..+....+...+.-.|-
T Consensus 359 ~~R~~ll~~ir~n~vvvivgETGSGKTTQl~---QyL~e-dGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGY 434 (1042)
T KOG0924|consen 359 ACRDQLLSVIRENQVVVIVGETGSGKTTQLA---QYLYE-DGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGY 434 (1042)
T ss_pred HHHHHHHHHHhhCcEEEEEecCCCCchhhhH---HHHHh-cccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccce
Confidence 34556666666665 7799999999998733 22222 1112333455666999888888888887765544433331
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCe
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPR 182 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ 182 (1396)
. ...-+-.-.+..|-.||-++|+.-.-. .-.+++++.||+||||.-.-| ..|+.+++...+. ....-+
T Consensus 435 s------IRFEdvT~~~T~IkymTDGiLLrEsL~-d~~L~kYSviImDEAHERslN---tDilfGllk~~la--rRrdlK 502 (1042)
T KOG0924|consen 435 S------IRFEDVTSEDTKIKYMTDGILLRESLK-DRDLDKYSVIIMDEAHERSLN---TDILFGLLKKVLA--RRRDLK 502 (1042)
T ss_pred E------EEeeecCCCceeEEEeccchHHHHHhh-hhhhhheeEEEechhhhcccc---hHHHHHHHHHHHH--hhccce
Confidence 0 000111123567889999999864321 234678999999999976533 2344444443221 123457
Q ss_pred EEEEeccCCCCCCCCchhhHHHHHHHHHHHhC-CeEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHHHH
Q 000607 183 IFGMTASPIKSKVSSSEQDYWQKIHDLETLMN-SKVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAMIE 261 (1396)
Q Consensus 183 ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~-~~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~l~ 261 (1396)
++.+|||.. +..+.+.++ +..++.. ....|. .+.|...+.
T Consensus 503 liVtSATm~--------------a~kf~nfFgn~p~f~Ip-------GRTyPV--~~~~~k~p~---------------- 543 (1042)
T KOG0924|consen 503 LIVTSATMD--------------AQKFSNFFGNCPQFTIP-------GRTYPV--EIMYTKTPV---------------- 543 (1042)
T ss_pred EEEeecccc--------------HHHHHHHhCCCceeeec-------CCccce--EEEeccCch----------------
Confidence 899999972 445556665 4444331 001111 111221110
Q ss_pred HHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHHHH
Q 000607 262 LKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQ 341 (1396)
Q Consensus 262 ~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 341 (1396)
..|.+-
T Consensus 544 -----------------------------------------------------------------------eDYVea--- 549 (1042)
T KOG0924|consen 544 -----------------------------------------------------------------------EDYVEA--- 549 (1042)
T ss_pred -----------------------------------------------------------------------HHHHHH---
Confidence 001100
Q ss_pred HHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHH----HHHhhcCC-CCC
Q 000607 342 ALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQS----LLSELLPR-HCT 416 (1396)
Q Consensus 342 ~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~----~L~~~~p~-~~~ 416 (1396)
.+++.+ .+ +......-++||....+..+.... -|.++... ..+
T Consensus 550 avkq~v------~I--------------------------hl~~~~GdilIfmtGqediE~t~~~i~~~l~ql~~~~~~~ 597 (1042)
T KOG0924|consen 550 AVKQAV------QI--------------------------HLSGPPGDILIFMTGQEDIECTCDIIKEKLEQLDSAPTTD 597 (1042)
T ss_pred HHhhhe------Ee--------------------------eccCCCCCEEEecCCCcchhHHHHHHHHHHHhhhcCCCCc
Confidence 011100 00 111244568899887665544444 44433111 135
Q ss_pred ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeC--------C----------CCc
Q 000607 417 WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFD--------P----------SRT 478 (1396)
Q Consensus 417 ~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD--------~----------p~s 478 (1396)
+.+..+.+. |+..-|.+++++--.|.-+|||||+++|..|.||.+.+||.-+ + |-|
T Consensus 598 L~vlpiYSQ------Lp~dlQ~kiFq~a~~~vRK~IvATNIAETSLTi~gI~yVID~Gy~K~kvyn~~~G~D~L~~~pIS 671 (1042)
T KOG0924|consen 598 LAVLPIYSQ------LPADLQAKIFQKAEGGVRKCIVATNIAETSLTIPGIRYVIDTGYCKLKVYNPRIGMDALQIVPIS 671 (1042)
T ss_pred eEEEeehhh------CchhhhhhhcccCCCCceeEEEeccchhhceeecceEEEEecCceeeeecccccccceeEEEech
Confidence 677777666 6888999999888889999999999999999999999999422 2 556
Q ss_pred HHHHHHhhhcccCCC-CcEEEEEecC
Q 000607 479 VCSFIQSRGRARMQN-SDYLLMVKSG 503 (1396)
Q Consensus 479 ~~~yiQr~GRA~R~g-s~~i~lv~~~ 503 (1396)
-.+--||.|||||.| |.++-++++.
T Consensus 672 ~AnA~QRaGRAGRt~pG~cYRlYTe~ 697 (1042)
T KOG0924|consen 672 QANADQRAGRAGRTGPGTCYRLYTED 697 (1042)
T ss_pred hccchhhccccCCCCCcceeeehhhh
Confidence 667789999999988 7899888743
No 162
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.55 E-value=4.7e-14 Score=143.96 Aligned_cols=142 Identities=26% Similarity=0.267 Sum_probs=106.7
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC--CeEEEEeCCCCcccCCccch
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD--LKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~--~~v~~~~G~~~~~~~~~~~~ 113 (1396)
+++++.++||+|||.+++.++..+... ...+++++++|++.|+.|+.+.+..... ..+..+.+.... ...+
T Consensus 1 ~~~~i~~~~G~GKT~~~~~~~~~~~~~---~~~~~~lv~~p~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~ 73 (144)
T cd00046 1 RDVLLAAPTGSGKTLAALLPILELLDS---LKGGQVLVLAPTRELANQVAERLKELFGEGIKVGYLIGGTSI----KQQE 73 (144)
T ss_pred CCEEEECCCCCchhHHHHHHHHHHHhc---ccCCCEEEEcCcHHHHHHHHHHHHHHhhCCcEEEEEecCcch----hHHH
Confidence 368999999999999999887765432 3567899999999999999999998774 788877776322 2333
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.......+|+++|++.+...+.........++++|+||||++.........+.... .....++++++||||
T Consensus 74 ~~~~~~~~i~i~t~~~~~~~~~~~~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~------~~~~~~~~i~~saTp 144 (144)
T cd00046 74 KLLSGKTDIVVGTPGRLLDELERLKLSLKKLDLLILDEAHRLLNQGFGLLGLKILL------KLPKDRQVLLLSATP 144 (144)
T ss_pred HHhcCCCCEEEECcHHHHHHHHcCCcchhcCCEEEEeCHHHHhhcchHHHHHHHHh------hCCccceEEEEeccC
Confidence 44456899999999999887765544566899999999999987644443211111 234567899999998
No 163
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.53 E-value=1.8e-14 Score=130.64 Aligned_cols=73 Identities=36% Similarity=0.575 Sum_probs=70.3
Q ss_pred CCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 415 CTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 415 ~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
.++++..+||+ |+.++|.+++++|++|+.++||||+++++|||+|.+++||++|+|+|+..|+|+.||++|.|
T Consensus 6 ~~~~~~~i~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gid~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 6 KGIKVAIIHGD------MSQKERQEILKKFNSGEIRVLIATDILGEGIDLPDASHVIFYDPPWSPEEYIQRIGRAGRIG 78 (78)
T ss_dssp TTSSEEEESTT------SHHHHHHHHHHHHHTTSSSEEEESCGGTTSSTSTTESEEEESSSESSHHHHHHHHTTSSTTT
T ss_pred CCCcEEEEECC------CCHHHHHHHHHHhhccCceEEEeeccccccccccccccccccccCCCHHHHHHHhhcCCCCC
Confidence 48999999997 59999999999999999999999999999999999999999999999999999999999986
No 164
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.53 E-value=3.3e-13 Score=156.34 Aligned_cols=313 Identities=19% Similarity=0.147 Sum_probs=192.1
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
++|-.+++.++.+.. +||.++||||||.+ |.+++.... ..+++++-+--|.+.-+...+..+.+..|.+.|.-+
T Consensus 267 y~ykdell~av~e~QVLiI~GeTGSGKTTQ----iPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~eV 342 (902)
T KOG0923|consen 267 YPYKDELLKAVKEHQVLIIVGETGSGKTTQ----IPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHEV 342 (902)
T ss_pred hhhHHHHHHHHHhCcEEEEEcCCCCCcccc----ccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCccccccc
Confidence 556667777777664 77999999999987 454443221 225666778889999999999888887776665544
Q ss_pred CCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
|- +....+......-+-+||-++|+.-+.. -..+..+++||+||||.-.-+ ..|+-+......+ ..+-
T Consensus 343 GY------sIRFEdcTSekTvlKYMTDGmLlREfL~-epdLasYSViiiDEAHERTL~---TDILfgLvKDIar--~Rpd 410 (902)
T KOG0923|consen 343 GY------SIRFEDCTSEKTVLKYMTDGMLLREFLS-EPDLASYSVIIVDEAHERTLH---TDILFGLVKDIAR--FRPD 410 (902)
T ss_pred ce------EEEeccccCcceeeeeecchhHHHHHhc-cccccceeEEEeehhhhhhhh---hhHHHHHHHHHHh--hCCc
Confidence 42 1111122223456779999999976543 345789999999999965421 2344444433211 1223
Q ss_pred CeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCC-eEEeccChhhhcccccCCcceeEeccCCCCchhhHHHHHHHHHH
Q 000607 181 PRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCASESVLSNFIPFSTAKFKFYKYDEIPHALYTHLADELAM 259 (1396)
Q Consensus 181 p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~-~i~~~~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l~~~l~~ 259 (1396)
-++|..|||.- ..+....+|. .++.+. .+.-...+.|...+.
T Consensus 411 LKllIsSAT~D--------------AekFS~fFDdapIF~iP---------GRRyPVdi~Yt~~PE-------------- 453 (902)
T KOG0923|consen 411 LKLLISSATMD--------------AEKFSAFFDDAPIFRIP---------GRRYPVDIFYTKAPE-------------- 453 (902)
T ss_pred ceEEeeccccC--------------HHHHHHhccCCcEEecc---------CcccceeeecccCCc--------------
Confidence 47889999972 2334444443 222210 000111122222110
Q ss_pred HHHHHHhhhhhhchhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhccccchhhhhhcccchHHHHHHHHHHH
Q 000607 260 IELKHTRSLENLDLNEAQAELIRKKVSKINSTLLYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDA 339 (1396)
Q Consensus 260 l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (1396)
..|+..+
T Consensus 454 -------------------------------------------------------------------------AdYldAa 460 (902)
T KOG0923|consen 454 -------------------------------------------------------------------------ADYLDAA 460 (902)
T ss_pred -------------------------------------------------------------------------hhHHHHH
Confidence 0111111
Q ss_pred HHHHHHhccCCCccccCCCCcccCCCCCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHH----hhcCCCC
Q 000607 340 SQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLS----ELLPRHC 415 (1396)
Q Consensus 340 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~----~~~p~~~ 415 (1396)
...+-++ +...+..-+|||....+........|. .+.....
T Consensus 461 i~tVlqI-----------------------------------H~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~ 505 (902)
T KOG0923|consen 461 IVTVLQI-----------------------------------HLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIR 505 (902)
T ss_pred Hhhheee-----------------------------------EeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccc
Confidence 1111111 111244567888776555544444444 3322212
Q ss_pred CceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEE--------eCC----------CC
Q 000607 416 TWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIM--------FDP----------SR 477 (1396)
Q Consensus 416 ~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~--------fD~----------p~ 477 (1396)
.+-+..++.+ ++...|..+++---.|--+|++||+++|..|.|+++++||. |++ |-
T Consensus 506 eliv~PiYaN------LPselQakIFePtP~gaRKVVLATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~pi 579 (902)
T KOG0923|consen 506 ELIVLPIYAN------LPSELQAKIFEPTPPGARKVVLATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPI 579 (902)
T ss_pred eEEEeecccc------CChHHHHhhcCCCCCCceeEEEeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeee
Confidence 3445556555 68899999988888898999999999999999999999993 433 55
Q ss_pred cHHHHHHhhhcccCCC-CcEEEEEec
Q 000607 478 TVCSFIQSRGRARMQN-SDYLLMVKS 502 (1396)
Q Consensus 478 s~~~yiQr~GRA~R~g-s~~i~lv~~ 502 (1396)
|-.+-.||.|||||.| |+|+-+++.
T Consensus 580 SKAsA~QRaGRAGRtgPGKCfRLYt~ 605 (902)
T KOG0923|consen 580 SKASANQRAGRAGRTGPGKCFRLYTA 605 (902)
T ss_pred chhhhhhhccccCCCCCCceEEeech
Confidence 6678899999999998 899999873
No 165
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.53 E-value=1.1e-12 Score=172.11 Aligned_cols=106 Identities=14% Similarity=0.240 Sum_probs=74.9
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
...++|||+++....+.++..|...... .++. .+... +. ..|.+++++|++|+..||++|+.+.||||+|
T Consensus 673 ~~g~~LVlftS~~~l~~v~~~L~~~~~~-~~~~--~l~q~------~~-~~r~~ll~~F~~~~~~iLlgt~sf~EGVD~~ 742 (850)
T TIGR01407 673 TSPKILVLFTSYEMLHMVYDMLNELPEF-EGYE--VLAQG------IN-GSRAKIKKRFNNGEKAILLGTSSFWEGVDFP 742 (850)
T ss_pred cCCCEEEEeCCHHHHHHHHHHHhhhccc-cCce--EEecC------CC-ccHHHHHHHHHhCCCeEEEEcceeecccccC
Confidence 4569999999999999999998753111 2333 23222 12 3678899999999999999999999999999
Q ss_pred ccc--EEEEeCCC----Cc--------------------------HHHHHHhhhcccCCCC--cEEEEEe
Q 000607 466 SCN--LVIMFDPS----RT--------------------------VCSFIQSRGRARMQNS--DYLLMVK 501 (1396)
Q Consensus 466 ~~~--lVI~fD~p----~s--------------------------~~~yiQr~GRA~R~gs--~~i~lv~ 501 (1396)
+.. +||...+| .+ ...+.|..||.-|... ..+++++
T Consensus 743 g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~~D~G~v~ilD 812 (850)
T TIGR01407 743 GNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRENDRGSIVILD 812 (850)
T ss_pred CCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccCCceEEEEEEc
Confidence 955 45544433 21 2345699999988663 3455554
No 166
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.51 E-value=5.6e-13 Score=162.36 Aligned_cols=131 Identities=18% Similarity=0.159 Sum_probs=95.2
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C-
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D- 93 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~- 93 (1396)
...|+..|.--..+..+| ..-+.+|||.|||.-.++....++ ..++++++|+||+.|+.|.++.++++. +
T Consensus 80 G~~~ws~QR~WakR~~rg~SFaiiAPTGvGKTTfg~~~sl~~a-----~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~ 154 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGKSFAIIAPTGVGKTTFGLLMSLYLA-----KKGKRVYIIVPTTTLVRQVYERLKKFAEDAGS 154 (1187)
T ss_pred CCCchHHHHHHHHHHHcCCceEEEcCCCCchhHHHHHHHHHHH-----hcCCeEEEEecCHHHHHHHHHHHHHHHhhcCC
Confidence 446899999999999998 588999999999876544333232 256899999999999999999999875 2
Q ss_pred CeEEE-EeCCCCcccCCccchHHhh--ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 94 LKVGK-YWGDMGVDFWDGATWKEEM--SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 94 ~~v~~-~~G~~~~~~~~~~~~~~~~--~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
..+.. |+|.+.... ++.....+ .+.||+|+|.|-|..... .+.--+++++++|.++.+.+.
T Consensus 155 ~~~~~~yh~~l~~~e--kee~le~i~~gdfdIlitTs~FL~k~~e--~L~~~kFdfifVDDVDA~Lka 218 (1187)
T COG1110 155 LDVLVVYHSALPTKE--KEEALERIESGDFDILITTSQFLSKRFE--ELSKLKFDFIFVDDVDAILKA 218 (1187)
T ss_pred cceeeeeccccchHH--HHHHHHHHhcCCccEEEEeHHHHHhhHH--HhcccCCCEEEEccHHHHHhc
Confidence 33332 777754432 22223333 369999999998876554 222247999999999988753
No 167
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.49 E-value=2.5e-13 Score=159.83 Aligned_cols=149 Identities=22% Similarity=0.249 Sum_probs=90.7
Q ss_pred HHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC---CeEEE---Ee
Q 000607 29 ALENALKQN-TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD---LKVGK---YW 100 (1396)
Q Consensus 29 ~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~---~~v~~---~~ 100 (1396)
+.|++-.+. +|||+.||||||.+.=-.+.+... ....+.+..+=|--|.|.-+.-.++.+...++ -.|+. |.
T Consensus 264 IMEaIn~n~vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYqIRfd 343 (1172)
T KOG0926|consen 264 IMEAINENPVVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQIRFD 343 (1172)
T ss_pred HHHHhhcCCeEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEEEEec
Confidence 333333343 899999999999873322322110 01112344566777888766666665554433 22322 22
Q ss_pred CCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC--C--
Q 000607 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET--G-- 176 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~--~-- 176 (1396)
|.. -.+..|-+||-++|+.-+.+.|+ +..++.||+||||.-. -|..|+-+.+.+..+. .
T Consensus 344 ~ti-------------~e~T~IkFMTDGVLLrEi~~Dfl-L~kYSvIIlDEAHERS---vnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 344 GTI-------------GEDTSIKFMTDGVLLREIENDFL-LTKYSVIILDEAHERS---VNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred ccc-------------CCCceeEEecchHHHHHHHHhHh-hhhceeEEechhhhcc---chHHHHHHHHHHHHHHHHHHh
Confidence 221 12578999999999999888776 7899999999999754 4556665555443211 1
Q ss_pred ---CCC-CCeEEEEeccCCCCC
Q 000607 177 ---DSN-LPRIFGMTASPIKSK 194 (1396)
Q Consensus 177 ---~~~-~p~ilgLTATp~~~~ 194 (1396)
..- .-+.+.||||.-..+
T Consensus 407 ke~~~~kpLKLIIMSATLRVsD 428 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSD 428 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecc
Confidence 111 236889999985543
No 168
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.48 E-value=2.4e-13 Score=137.01 Aligned_cols=114 Identities=28% Similarity=0.427 Sum_probs=103.5
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
+.|...+.+.+..+. .++.++||||+++..+..+.+.|.+ .+..+.+++|. ++..++..++++|++|.
T Consensus 11 ~~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~-----~~~~~~~~~~~------~~~~~~~~~~~~f~~~~ 78 (131)
T cd00079 11 DEKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRK-----PGIKVAALHGD------GSQEEREEVLKDFREGE 78 (131)
T ss_pred HHHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHh-----cCCcEEEEECC------CCHHHHHHHHHHHHcCC
Confidence 368888888888753 2678999999999999999999986 36788899998 48899999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
..+||+|+++++|+|+|.+++||.++.|++...|+|++||++|.|.
T Consensus 79 ~~ili~t~~~~~G~d~~~~~~vi~~~~~~~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 79 IVVLVATDVIARGIDLPNVSVVINYDLPWSPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred CcEEEEcChhhcCcChhhCCEEEEeCCCCCHHHheecccccccCCC
Confidence 9999999999999999999999999999999999999999999984
No 169
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=99.48 E-value=7.5e-13 Score=157.63 Aligned_cols=132 Identities=17% Similarity=0.174 Sum_probs=102.9
Q ss_pred CCccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC-----------------CCCceeeEEecCCCC
Q 000607 366 GLLTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR-----------------HCTWKTKYIAGNNSG 428 (1396)
Q Consensus 366 ~~~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~-----------------~~~~~~~~l~G~~~~ 428 (1396)
-..|+|+-.|+++|.... .-+.+.|||.++..+...|.++|.-.... +.|.....+.|.
T Consensus 1122 ~~~SgKmiLLleIL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGs--- 1197 (1567)
T KOG1015|consen 1122 LEHSGKMILLLEILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGS--- 1197 (1567)
T ss_pred hhcCcceehHHHHHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCc---
Confidence 346899999999999863 45789999999999999999999854210 012222334444
Q ss_pred cCCCCHHHHHHHHHHHhcCC----eeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc----EEEEE
Q 000607 429 IQCQSRKKQNEIVEEFRRGL----VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD----YLLMV 500 (1396)
Q Consensus 429 ~~~ms~~~r~~~l~~Fr~g~----~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~----~i~lv 500 (1396)
.+..+|....+.|.+-. .-.||+|.+++-|||+-++|-||.||..||+.--+|++=|+.|.|+. +|-|+
T Consensus 1198 ---t~s~~R~k~~~~FNdp~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasWNPSyDtQSIFRvyRfGQtKPvyiYRfi 1274 (1567)
T KOG1015|consen 1198 ---TTSQSRKKWAEEFNDPTNLRARLFLISTRAGSLGINLVAANRVIIFDASWNPSYDTQSIFRVYRFGQTKPVYIYRFI 1274 (1567)
T ss_pred ---ccHHHHHHHHHHhcCcccceeEEEEEeeccCccccceeecceEEEEecccCCccchHHHHHHHhhcCcCceeehhhh
Confidence 36788999999998632 23799999999999999999999999999999999999999999962 34455
Q ss_pred ecCC
Q 000607 501 KSGD 504 (1396)
Q Consensus 501 ~~~~ 504 (1396)
..|.
T Consensus 1275 AqGT 1278 (1567)
T KOG1015|consen 1275 AQGT 1278 (1567)
T ss_pred hccc
Confidence 5553
No 170
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.40 E-value=2e-10 Score=139.43 Aligned_cols=126 Identities=19% Similarity=0.115 Sum_probs=92.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCeE
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~v 96 (1396)
..|++.|.-..-..+.|+ |+-|.||.|||++|.+++...+. .++.+-+++|+--|+.|-++.+.. ++|++|
T Consensus 77 ~r~ydvQlig~l~Ll~G~-VaEM~TGEGKTLvA~l~a~l~AL-----~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsv 150 (764)
T PRK12326 77 LRPFDVQLLGALRLLAGD-VIEMATGEGKTLAGAIAAAGYAL-----QGRRVHVITVNDYLARRDAEWMGPLYEALGLTV 150 (764)
T ss_pred CCcchHHHHHHHHHhCCC-cccccCCCCHHHHHHHHHHHHHH-----cCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEE
Confidence 447788888877777665 67999999999999986653322 577799999999999998887775 468999
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-----HhHh--hcCccccceeEEEEeccccccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-----DGLR--LSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-----~~l~--~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
+.+.+++..+ -+...-.+||+.+|..-|- +.+. ........+++.|+||++.+.=
T Consensus 151 g~i~~~~~~~------err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~R~~~faIVDEvDSiLI 212 (764)
T PRK12326 151 GWITEESTPE------ERRAAYACDVTYASVNEIGFDVLRDQLVTDVADLVSPNPDVAIIDEADSVLV 212 (764)
T ss_pred EEECCCCCHH------HHHHHHcCCCEEcCCcccccccchhhhccChHhhcCCccceeeecchhhhee
Confidence 9998875432 1333347999999986543 3322 1122345689999999998763
No 171
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.39 E-value=1.4e-12 Score=151.94 Aligned_cols=156 Identities=24% Similarity=0.251 Sum_probs=99.8
Q ss_pred HHHHHHHHHhc--------------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 25 YQLEALENALK--------------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 25 yQ~e~~~~~l~--------------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
||.+++..++. +++|+++++|+|||.+++.++..+....+....+.+|||||+ .+..||..++.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 78888886632 259999999999999999988765443222233469999999 888999999999
Q ss_pred hc---CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhH---hhcCccccceeEEEEeccccccCCCcHHHH
Q 000607 91 HT---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGL---RLSYFKLNMIKVLILDECHHARGKHQYACI 164 (1396)
Q Consensus 91 ~~---~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l---~~~~~~l~~i~llI~DEaH~~~~~~~~~~i 164 (1396)
++ .+++..+.|.... ...........+|+|+|++.+...- ....+..-++++||+||+|.+.+...- .
T Consensus 80 ~~~~~~~~v~~~~~~~~~----~~~~~~~~~~~~vvi~ty~~~~~~~~~~~~~~l~~~~~~~vIvDEaH~~k~~~s~--~ 153 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSER----RRLSKNQLPKYDVVITTYETLRKARKKKDKEDLKQIKWDRVIVDEAHRLKNKDSK--R 153 (299)
T ss_dssp HSGT-TS-EEEESSSCHH----HHTTSSSCCCSSEEEEEHHHHH--TSTHTTHHHHTSEEEEEEETTGGGGTTTTSH--H
T ss_pred cccccccccccccccccc----ccccccccccceeeeccccccccccccccccccccccceeEEEeccccccccccc--c
Confidence 98 4788888776400 1112233457899999999998110 011222245999999999999754321 1
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
..... . -..+++++|||||..+.
T Consensus 154 ~~~l~------~-l~~~~~~lLSgTP~~n~ 176 (299)
T PF00176_consen 154 YKALR------K-LRARYRWLLSGTPIQNS 176 (299)
T ss_dssp HHHHH------C-CCECEEEEE-SS-SSSG
T ss_pred ccccc------c-cccceEEeecccccccc
Confidence 12221 1 12678999999999875
No 172
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.35 E-value=4e-10 Score=140.27 Aligned_cols=124 Identities=19% Similarity=0.067 Sum_probs=88.5
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh---cCCeEEE
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH---TDLKVGK 98 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~---~~~~v~~ 98 (1396)
|++.|.-.- .++...-|+-|.||.|||++|.+++...+. .++.+-+++|+--|+.|.++.+..+ +|++|+.
T Consensus 83 ~ydVQliGg-~~Lh~G~iaEM~TGEGKTLvA~l~a~l~al-----~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~ 156 (913)
T PRK13103 83 HFDVQLIGG-MTLHEGKIAEMRTGEGKTLVGTLAVYLNAL-----SGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGI 156 (913)
T ss_pred cchhHHHhh-hHhccCccccccCCCCChHHHHHHHHHHHH-----cCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEE
Confidence 444554332 334457899999999999999986543222 5777999999999999988888865 5899999
Q ss_pred EeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhc------CccccceeEEEEeccccccC
Q 000607 99 YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLS------YFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 99 ~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~------~~~l~~i~llI~DEaH~~~~ 157 (1396)
+.|++... -++..-.++|+++|...|- |.|+.. ..-...+.+.|+||+|.+.=
T Consensus 157 i~~~~~~~------err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~~~~vqr~l~~aIVDEvDsiLI 216 (913)
T PRK13103 157 VTPFQPPE------EKRAAYAADITYGTNNEFGFDYLRDNMAFSLDDKFQRELNFAVIDEVDSILI 216 (913)
T ss_pred ECCCCCHH------HHHHHhcCCEEEEcccccccchhhccceechhhhcccccceeEechhhheec
Confidence 98875433 1233335999999998862 222221 12236789999999998863
No 173
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.30 E-value=3e-10 Score=146.78 Aligned_cols=131 Identities=18% Similarity=0.146 Sum_probs=90.1
Q ss_pred cccchHHHHHHHHHHhc---C--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH-HHH---H
Q 000607 19 LPFARNYQLEALENALK---Q--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA-EAI---K 89 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~---~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~-~~i---~ 89 (1396)
.+..|+-|.++.+.+.+ + .+++.++||+|||+++++.+... . .+++++|++||++|.+|.. +.+ .
T Consensus 243 ~~e~R~~Q~~ma~~V~~~l~~~~~~~~eA~tGtGKT~ayllp~l~~---~---~~~~vvI~t~T~~Lq~Ql~~~~i~~l~ 316 (820)
T PRK07246 243 GLEERPKQESFAKLVGEDFHDGPASFIEAQTGIGKTYGYLLPLLAQ---S---DQRQIIVSVPTKILQDQIMAEEVKAIQ 316 (820)
T ss_pred CCccCHHHHHHHHHHHHHHhCCCcEEEECCCCCcHHHHHHHHHHHh---c---CCCcEEEEeCcHHHHHHHHHHHHHHHH
Confidence 45789999997766554 2 58899999999999998764321 1 3578999999999999983 444 4
Q ss_pred HhcCCeEEEEeCCCCc--------------------------ccC-----------------CccchHH-----------
Q 000607 90 MHTDLKVGKYWGDMGV--------------------------DFW-----------------DGATWKE----------- 115 (1396)
Q Consensus 90 ~~~~~~v~~~~G~~~~--------------------------~~~-----------------~~~~~~~----------- 115 (1396)
+.+++++..+.|..+. -.| ....|..
T Consensus 317 ~~~~~~~~~~kg~~~ylcl~k~~~~l~~~~~~~~~~~~~~~il~Wl~~T~tGD~~El~~~~~~~~~w~~i~~~~~~~~~c 396 (820)
T PRK07246 317 EVFHIDCHSLKGPQNYLKLDAFYDSLQQNDDNRLVNRYKMQLLVWLTETETGDLDEIKQKQRYAAYFDQLKHDGNLSQSS 396 (820)
T ss_pred HhcCCcEEEEECCcccccHHHHHHHhhccCcchHHHHHHHHHHHHHhcCCCCCHhhccCCccccHHHHHhhccCCCCCCC
Confidence 4567766665554210 000 0011222
Q ss_pred -------------hhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 116 -------------EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 116 -------------~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
....++|+|+....|...+..+.. +...+.+|||||||+.
T Consensus 397 p~~~~cf~~~ar~~a~~AdivItNHall~~~~~~~~~-~p~~~~lIiDEAH~l~ 449 (820)
T PRK07246 397 LFYDYDFWKRSYEKAKTARLLITNHAYFLTRVQDDKD-FARNKVLVFDEAQKLM 449 (820)
T ss_pred CcchhhHHHHHHHHHHhCCEEEEchHHHHHHHhhccC-CCCCCEEEEECcchhH
Confidence 123679999999988876644322 4678999999999997
No 174
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.30 E-value=7.6e-12 Score=114.55 Aligned_cols=80 Identities=38% Similarity=0.591 Sum_probs=73.1
Q ss_pred HHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHH
Q 000607 403 LQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSF 482 (1396)
Q Consensus 403 L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~y 482 (1396)
++..|+. .++++..+||. |+.++|.++++.|++|...+||+|+++++|+|+|.++.||.+++|++...|
T Consensus 3 l~~~l~~-----~~~~~~~~~~~------~~~~~r~~~~~~f~~~~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~~~~~~ 71 (82)
T smart00490 3 LAELLKE-----LGIKVARLHGG------LSQEEREEILEKFNNGKIKVLVATDVAERGLDLPGVDLVIIYDLPWSPASY 71 (82)
T ss_pred HHHHHHH-----CCCeEEEEECC------CCHHHHHHHHHHHHcCCCeEEEECChhhCCcChhcCCEEEEeCCCCCHHHH
Confidence 4556664 36889999997 588999999999999999999999999999999999999999999999999
Q ss_pred HHhhhcccCCC
Q 000607 483 IQSRGRARMQN 493 (1396)
Q Consensus 483 iQr~GRA~R~g 493 (1396)
+|+.||++|.|
T Consensus 72 ~Q~~gR~~R~g 82 (82)
T smart00490 72 IQRIGRAGRAG 82 (82)
T ss_pred HHhhcccccCC
Confidence 99999999975
No 175
>cd02845 PAZ_piwi_like PAZ domain, Piwi_like subfamily. In multi-cellular organisms, the Piwi protein appears to be essential for the maintenance of germline stem cells. In the Drosophila male germline, Piwi was shown to be involved in the silencing of retrotransposons in the male gametes. The Piwi proteins share their domain architecture with other members of the argonaute family. The PAZ domain has been named after the proteins Piwi, Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might
Probab=99.27 E-value=7.8e-12 Score=120.70 Aligned_cols=88 Identities=26% Similarity=0.363 Sum_probs=71.8
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhhhc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQ 911 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~~~ 911 (1396)
..+.|.+|.+.|+++.|.|.+|.++++|.|.|+..++...||.+||+++||+.|.+++||||.+..-.+ +.
T Consensus 26 ~~l~g~~V~t~yn~k~Y~I~~I~~~~~p~s~F~~~~~~~~S~~~Yy~~kY~i~I~~~~qPLL~~~~k~~--~~------- 96 (117)
T cd02845 26 KELIGSIVLTRYNNKTYRIDDIDFDKTPLSTFKKSDGTEITFVEYYKKQYNIEITDLNQPLLVSRPKRR--DP------- 96 (117)
T ss_pred HHcCCCEEEEeeCCeEEEEeEecCCCCccccCcCCCCCeeeHHHHHHHHcCCccccCCCCcEEeecccc--cc-------
Confidence 457899999999999999999999999999998655556799999999999999999999999973332 10
Q ss_pred ccCCCCcceeeeccccccc
Q 000607 912 KQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 912 ~~~~~~~~~~~L~pelC~~ 930 (1396)
.......++||||+|.+
T Consensus 97 --~~~~~~~iyL~pElC~l 113 (117)
T cd02845 97 --RGGEKEPIYLIPELCFL 113 (117)
T ss_pred --CCCCCcEEEEchHHhhh
Confidence 11123347899999975
No 176
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.26 E-value=8.1e-10 Score=145.57 Aligned_cols=95 Identities=11% Similarity=0.079 Sum_probs=65.7
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEE
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVI 452 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvL 452 (1396)
..+.+.|.+.....+.+++||.++......++..|...... .++. ....| ++...|.+++++|++++-.||
T Consensus 738 ~~la~~i~~l~~~~~g~~LVLFtSy~~l~~v~~~l~~~~~~-~~~~-ll~Qg-------~~~~~r~~l~~~F~~~~~~iL 808 (928)
T PRK08074 738 EEVAAYIAKIAKATKGRMLVLFTSYEMLKKTYYNLKNEEEL-EGYV-LLAQG-------VSSGSRARLTKQFQQFDKAIL 808 (928)
T ss_pred HHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHhhcccc-cCce-EEecC-------CCCCCHHHHHHHHHhcCCeEE
Confidence 45555554433335568999999999999999998853111 1222 12223 222356889999999988999
Q ss_pred EEecccccccCCCc--ccEEEEeCCC
Q 000607 453 VATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 453 VaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
++|....||||+|+ +.+||.-.+|
T Consensus 809 lG~~sFwEGVD~pg~~l~~viI~kLP 834 (928)
T PRK08074 809 LGTSSFWEGIDIPGDELSCLVIVRLP 834 (928)
T ss_pred EecCcccCccccCCCceEEEEEecCC
Confidence 99999999999998 5777754433
No 177
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.17 E-value=2.2e-08 Score=123.65 Aligned_cols=118 Identities=18% Similarity=0.220 Sum_probs=91.0
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHH-HHHHHHhc
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQN-EIVEEFRR 446 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~-~~l~~Fr~ 446 (1396)
...|..++++-+... ...+..+||.|.++..++.|+++|.+ .|++..++.... .+++ +++. +.
T Consensus 408 ~~~K~~Aii~ei~~~-~~~gqPVLVgT~SIe~SE~ls~~L~~-----~gi~h~vLNAk~--------~e~EA~IIa--~A 471 (925)
T PRK12903 408 KHAKWKAVVKEVKRV-HKKGQPILIGTAQVEDSETLHELLLE-----ANIPHTVLNAKQ--------NAREAEIIA--KA 471 (925)
T ss_pred HHHHHHHHHHHHHHH-HhcCCCEEEEeCcHHHHHHHHHHHHH-----CCCCceeecccc--------hhhHHHHHH--hC
Confidence 357888888777664 24788999999999999999999997 378877776642 2223 3333 55
Q ss_pred CC-eeEEEEecccccccCCCccc--------EEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEe
Q 000607 447 GL-VNVIVATSILEEGLDVQSCN--------LVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVK 501 (1396)
Q Consensus 447 g~-~nvLVaTsvleeGiDIp~~~--------lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~ 501 (1396)
|. -.|.|||+++++|.||.--. +||-...|.|.+---|-+|||||.| |..-.+++
T Consensus 472 G~~GaVTIATNMAGRGTDI~Lg~~V~~~GGLhVIgTerheSrRIDnQLrGRaGRQGDpGss~f~lS 537 (925)
T PRK12903 472 GQKGAITIATNMAGRGTDIKLSKEVLELGGLYVLGTDKAESRRIDNQLRGRSGRQGDVGESRFFIS 537 (925)
T ss_pred CCCCeEEEecccccCCcCccCchhHHHcCCcEEEecccCchHHHHHHHhcccccCCCCCcceEEEe
Confidence 64 57999999999999997543 8999999999999999999999998 33334443
No 178
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.15 E-value=3.8e-10 Score=128.44 Aligned_cols=115 Identities=22% Similarity=0.283 Sum_probs=88.5
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecccccccCCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGLDVQ 465 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvleeGiDIp 465 (1396)
.+.|||-||..|..++.+..+.+++.-+... ..+..-.+...|-+..+|.++....-.|+..-+|||+++|-||||.
T Consensus 524 ~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~---~LV~~i~SYRGGY~A~DRRKIE~~~F~G~L~giIaTNALELGIDIG 600 (1034)
T KOG4150|consen 524 HGLRCIAFCPSRKLCELVLCLTREILAETAP---HLVEAITSYRGGYIAEDRRKIESDLFGGKLCGIIATNALELGIDIG 600 (1034)
T ss_pred cCCcEEEeccHHHHHHHHHHHHHHHHHHhhH---HHHHHHHhhcCccchhhHHHHHHHhhCCeeeEEEecchhhhccccc
Confidence 5789999999999999888777765322110 1111111122235788899999998899999999999999999999
Q ss_pred cccEEEEeCCCCcHHHHHHhhhcccCCC--CcEEEEEecC
Q 000607 466 SCNLVIMFDPSRTVCSFIQSRGRARMQN--SDYLLMVKSG 503 (1396)
Q Consensus 466 ~~~lVI~fD~p~s~~~yiQr~GRA~R~g--s~~i~lv~~~ 503 (1396)
..+.|+..+.|.|+..+.|..|||||.+ |-.+.++..+
T Consensus 601 ~LDAVl~~GFP~S~aNl~QQ~GRAGRRNk~SLavyva~~~ 640 (1034)
T KOG4150|consen 601 HLDAVLHLGFPGSIANLWQQAGRAGRRNKPSLAVYVAFLG 640 (1034)
T ss_pred cceeEEEccCchhHHHHHHHhccccccCCCceEEEEEecc
Confidence 9999999999999999999999999987 4444444433
No 179
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.14 E-value=5.8e-10 Score=138.27 Aligned_cols=117 Identities=16% Similarity=0.142 Sum_probs=97.4
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
.+.|+..+.+.|......+..++|||++....+..+...|.. .++......|. |+.+.|.+.+..|..+
T Consensus 520 ~s~ki~~~~~~l~~~~~s~~~kiiifsq~~~~l~l~~~~l~~-----~~~~~~~~~g~------~~~~~r~~s~~~~~~~ 588 (674)
T KOG1001|consen 520 ESSKIYAFLKILQAKEMSEQPKIVIFSQLIWGLALVCLRLFF-----KGFVFLRYDGE------MLMKIRTKSFTDFPCD 588 (674)
T ss_pred hhhhhHHHHHHHhhccCCCCCceeeehhHHHHHHHhhhhhhh-----cccccchhhhh------hHHHHHHhhhcccccC
Confidence 588888888888854222225999999999999888887763 46777777776 6889999999999964
Q ss_pred C-e-eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCc
Q 000607 448 L-V-NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSD 495 (1396)
Q Consensus 448 ~-~-nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~ 495 (1396)
. . -.|++..++.-|+++..+++|++.|+-||+....|.+.||.|.|+.
T Consensus 589 ~~~~vll~Slkag~~glnlt~a~~v~~~d~~wnp~~eeQaidR~hrigq~ 638 (674)
T KOG1001|consen 589 PLVTALLMSLKAGKVGLNLTAASHVLLMDPWWNPAVEEQAIDRAHRIGQT 638 (674)
T ss_pred ccHHHHHHHHHHhhhhhchhhhhHHHhhchhcChHHHHHHHHHHHHhccc
Confidence 4 3 3566889999999999999999999999999999999999999974
No 180
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.08 E-value=2.7e-10 Score=111.16 Aligned_cols=133 Identities=23% Similarity=0.254 Sum_probs=79.6
Q ss_pred EEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.+|-+.+|+|||.-.+- ++++... .+.++|+|+|||.++....+.++.. .+..-..-.. ...
T Consensus 7 ~~~d~hpGaGKTr~vlp~~~~~~i~-----~~~rvLvL~PTRvva~em~~aL~~~---~~~~~t~~~~---------~~~ 69 (148)
T PF07652_consen 7 TVLDLHPGAGKTRRVLPEIVREAIK-----RRLRVLVLAPTRVVAEEMYEALKGL---PVRFHTNARM---------RTH 69 (148)
T ss_dssp EEEE--TTSSTTTTHHHHHHHHHHH-----TT--EEEEESSHHHHHHHHHHTTTS---SEEEESTTSS------------
T ss_pred eEEecCCCCCCcccccHHHHHHHHH-----ccCeEEEecccHHHHHHHHHHHhcC---CcccCceeee---------ccc
Confidence 77899999999985433 3333222 5778999999999999988888743 2221111100 122
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
..+.-|-|||+..+...+.+ ...+.++++||+||||-.- |..-...++.+.. .....-+++.|||||.-..
T Consensus 70 ~g~~~i~vMc~at~~~~~~~-p~~~~~yd~II~DEcH~~D---p~sIA~rg~l~~~---~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 70 FGSSIIDVMCHATYGHFLLN-PCRLKNYDVIIMDECHFTD---PTSIAARGYLREL---AESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp -SSSSEEEEEHHHHHHHHHT-SSCTTS-SEEEECTTT--S---HHHHHHHHHHHHH---HHTTS-EEEEEESS-TT--
T ss_pred cCCCcccccccHHHHHHhcC-cccccCccEEEEeccccCC---HHHHhhheeHHHh---hhccCeeEEEEeCCCCCCC
Confidence 34567889999999887665 4556899999999999753 3333344444332 1123357999999997643
No 181
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.06 E-value=2e-08 Score=125.80 Aligned_cols=135 Identities=10% Similarity=0.001 Sum_probs=97.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-CeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-LKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.|..+-+|||||.+++-+|...+. .++.+|||+|...|..|..+.++..++ ..+..++++.+... .-..|...
T Consensus 163 ~i~~~~~GSGKTevyl~~i~~~l~-----~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~-R~~~w~~~ 236 (665)
T PRK14873 163 AVWQALPGEDWARRLAAAAAATLR-----AGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPAD-RYRRWLAV 236 (665)
T ss_pred HHhhcCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHH-HHHHHHHH
Confidence 444444699999999988877654 477899999999999999999999887 88999999865442 23457776
Q ss_pred hcc-CcEEEecHHHHHHhHhhcCccccceeEEEEecccccc---CCCcHH--HHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 117 MSK-HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR---GKHQYA--CIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 117 ~~~-~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~---~~~~~~--~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
..+ .+|||+|-.-+ |..+.++.|||+||=|... ...||. +-+..+.. ...+ -.+++-||||
T Consensus 237 ~~G~~~IViGtRSAv-------FaP~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra-----~~~~-~~lvLgSaTP 303 (665)
T PRK14873 237 LRGQARVVVGTRSAV-------FAPVEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRA-----HQHG-CALLIGGHAR 303 (665)
T ss_pred hCCCCcEEEEcceeE-------EeccCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHH-----HHcC-CcEEEECCCC
Confidence 654 79999998654 6778899999999999665 223441 11111211 1123 3467779999
Q ss_pred C
Q 000607 191 I 191 (1396)
Q Consensus 191 ~ 191 (1396)
.
T Consensus 304 S 304 (665)
T PRK14873 304 T 304 (665)
T ss_pred C
Confidence 4
No 182
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=6.1e-09 Score=117.48 Aligned_cols=145 Identities=21% Similarity=0.170 Sum_probs=83.6
Q ss_pred HHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCC
Q 000607 26 QLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDM 103 (1396)
Q Consensus 26 Q~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~ 103 (1396)
|++-|-..+.+| ++++++||||||...=-....+ . .+....+..--|.+.-+.+.+..+....++..|.-.|-.
T Consensus 51 ~k~~F~~~l~~nQ~~v~vGetgsGKttQiPq~~~~~---~-~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVGys 126 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQIIVLVGETGSGKTTQIPQFVLEY---E-LSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVGYS 126 (699)
T ss_pred hHHHHHHHHhcCceEEEEecCCCCccccCcHHHHHH---H-HhhccceeecCchHHHHHHHHHHHHHHhccccchhcccc
Confidence 334444444444 7799999999997632221111 1 111233555668888888888888887777766555531
Q ss_pred CcccCCccchHHhhccC-----cEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCC
Q 000607 104 GVDFWDGATWKEEMSKH-----EVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDS 178 (1396)
Q Consensus 104 ~~~~~~~~~~~~~~~~~-----~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~ 178 (1396)
..++++ =.-.||-+.|++-.... -.+.++++||+||||.-. -...|+.+.....+.+.
T Consensus 127 -----------IrfEdC~~~~T~Lky~tDgmLlrEams~-p~l~~y~viiLDeahERt---lATDiLmGllk~v~~~r-- 189 (699)
T KOG0925|consen 127 -----------IRFEDCTSPNTLLKYCTDGMLLREAMSD-PLLGRYGVIILDEAHERT---LATDILMGLLKEVVRNR-- 189 (699)
T ss_pred -----------ccccccCChhHHHHHhcchHHHHHHhhC-cccccccEEEechhhhhh---HHHHHHHHHHHHHHhhC--
Confidence 111111 11135555555432222 235789999999999653 23345556655443322
Q ss_pred CCCeEEEEeccCC
Q 000607 179 NLPRIFGMTASPI 191 (1396)
Q Consensus 179 ~~p~ilgLTATp~ 191 (1396)
.--+++.||||..
T Consensus 190 pdLk~vvmSatl~ 202 (699)
T KOG0925|consen 190 PDLKLVVMSATLD 202 (699)
T ss_pred CCceEEEeecccc
Confidence 2347999999973
No 183
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.04 E-value=2.7e-08 Score=125.16 Aligned_cols=162 Identities=20% Similarity=0.153 Sum_probs=97.1
Q ss_pred chHHHHHHHHHHhc-------CC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 22 ARNYQLEALENALK-------QN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~-------~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
...+|-.+++.+.. .. ++-.+.||+|||++=+-+|..+. ....+-|..|--.-|.|--|.-+.+++-+
T Consensus 409 rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLs---d~~~g~RfsiALGLRTLTLQTGda~r~rL 485 (1110)
T TIGR02562 409 RFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALR---DDKQGARFAIALGLRSLTLQTGHALKTRL 485 (1110)
T ss_pred CcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhC---CCCCCceEEEEccccceeccchHHHHHhc
Confidence 35699999988775 12 66788999999998776665543 33455578888888899889888888765
Q ss_pred CC---eEEEEeCCC----------------------Cc------------ccCCccc-------hH------HhhccCcE
Q 000607 93 DL---KVGKYWGDM----------------------GV------------DFWDGAT-------WK------EEMSKHEV 122 (1396)
Q Consensus 93 ~~---~v~~~~G~~----------------------~~------------~~~~~~~-------~~------~~~~~~~V 122 (1396)
++ ...++.|+. +. -.|.... |. ..+-...|
T Consensus 486 ~L~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv 565 (1110)
T TIGR02562 486 NLSDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPV 565 (1110)
T ss_pred CCCccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCe
Confidence 43 233333330 00 0111110 10 11114689
Q ss_pred EEecHHHHHHhHh--h-cCc--cccc--eeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 123 LVMTPQILLDGLR--L-SYF--KLNM--IKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 123 iV~T~q~L~~~l~--~-~~~--~l~~--i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+|||+..++-... + +.. .+-. =+.|||||+|-+-.. .. ..+..+.+- ...-.-+++.||||...
T Consensus 566 ~V~TIDQlL~a~~~~r~~~~~l~ll~La~svlVlDEVHaYD~~-~~-~~L~rlL~w----~~~lG~~VlLmSATLP~ 636 (1110)
T TIGR02562 566 LVCTIDHLIPATESHRGGHHIAPMLRLMSSDLILDEPDDYEPE-DL-PALLRLVQL----AGLLGSRVLLSSATLPP 636 (1110)
T ss_pred EEecHHHHHHHhhhcccchhHHHHHHhcCCCEEEECCccCCHH-HH-HHHHHHHHH----HHHcCCCEEEEeCCCCH
Confidence 9999988886652 2 221 1112 368999999977431 12 223333321 11234579999999865
No 184
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.03 E-value=2.9e-08 Score=129.97 Aligned_cols=158 Identities=22% Similarity=0.273 Sum_probs=106.8
Q ss_pred ccchHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 20 PFARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
..+|-.|..++..+.+ ++.+|+.-||||||++.+.+...+.+. +..+.++|||.++.|-.|..+.+
T Consensus 247 ~~~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~---~~~~~v~fvvDR~dLd~Q~~~~f 323 (962)
T COG0610 247 KYQRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLEL---PKNPKVLFVVDRKDLDDQTSDEF 323 (962)
T ss_pred hHHHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhc---cCCCeEEEEechHHHHHHHHHHH
Confidence 3356666666663332 149999999999999988777766554 56778999999999999999999
Q ss_pred HHhcCCeEEEEeCCCCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhc--CccccceeEEEEeccccccCCCcHHHH
Q 000607 89 KMHTDLKVGKYWGDMGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLS--YFKLNMIKVLILDECHHARGKHQYACI 164 (1396)
Q Consensus 89 ~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~~~~~~~~~i 164 (1396)
..+.......- . .-+.......+. ...|+|+|-|.|-..+... ...-.+--++|+||||+.-.. ..+..
T Consensus 324 ~~~~~~~~~~~-~-----~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~~~~~~~~~~ivvI~DEaHRSQ~G-~~~~~ 396 (962)
T COG0610 324 QSFGKVAFNDP-K-----AESTSELKELLEDGKGKIIVTTIQKFNKAVKEDELELLKRKNVVVIIDEAHRSQYG-ELAKL 396 (962)
T ss_pred HHHHHhhhhcc-c-----ccCHHHHHHHHhcCCCcEEEEEecccchhhhcccccccCCCcEEEEEechhhcccc-HHHHH
Confidence 98753222111 1 112334444444 3489999999999887653 112233458899999998643 23333
Q ss_pred HHHHHHhhccCCCCCCCeEEEEeccCCCCCCC
Q 000607 165 MTEFYHRLLETGDSNLPRIFGMTASPIKSKVS 196 (1396)
Q Consensus 165 m~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~ 196 (1396)
|+..+ ..-..+|+|+||+.....
T Consensus 397 ~~~~~---------~~a~~~gFTGTPi~~~d~ 419 (962)
T COG0610 397 LKKAL---------KKAIFIGFTGTPIFKEDK 419 (962)
T ss_pred HHHHh---------ccceEEEeeCCccccccc
Confidence 43333 124689999999986543
No 185
>PF02170 PAZ: PAZ domain; InterPro: IPR003100 This domain is named after the proteins Piwi Argonaut and Zwille. It is also found in the CAF protein from Arabidopsis thaliana. The function of the domain is unknown but has been found in the middle region of a number of members of the Argonaute protein family, which also contain the Piwi domain (IPR003165 from INTERPRO) in their C-terminal region []. Several members of this family have been implicated in the development and maintenance of stem cells through the RNA-mediated gene-quelling mechanisms associated with the protein DICER. ; GO: 0005515 protein binding; PDB: 1R6Z_P 1T2R_A 1T2S_A 3MJ0_A 1VYN_A 3O3I_X 2L5C_A 3O6E_X 3O7V_X 2L5D_A ....
Probab=99.02 E-value=1.5e-10 Score=116.81 Aligned_cols=106 Identities=32% Similarity=0.416 Sum_probs=86.8
Q ss_pred cccccCcEEecCcCC--eeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 831 TCKIHNSLVCTPHNG--QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 831 ~~~~~~~~V~~~~~~--~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
...++|..|.+.|++ +.|.|.+|.++.+|.+.|+..++...||.+||+.+||++|.+++||+|.++...+.
T Consensus 26 ~~~lkg~~V~~~~~~~~r~~~I~~i~~~~~~~~~F~~~~g~~itv~eYf~~~Y~i~L~~p~~Pll~~~~~~~~------- 98 (135)
T PF02170_consen 26 ERALKGLKVTTTYNNNKRTYKIKGISFDPAPESTFPDNDGKEITVAEYFKEKYNIRLKYPDLPLLNVKSKKKK------- 98 (135)
T ss_dssp HHHHTTEEEEETTTTCCEEEEEEEEEEEETTTSEEEETTSEEEEHHHHHHHTCT---SSTTSEEEEECSTTTT-------
T ss_pred HHHcCCcEEEEecCCCceEEEEeEEECCCCcceeeecCCCceEEhHHHHHhhhhcccccCCCCeEEeccCCCC-------
Confidence 456899999999998 89999999999999999987657888999999999999999999999998844321
Q ss_pred hhcccCCCCcceeeecccccccccccccHHHHHHhhhhhhHHHHHHH
Q 000607 909 RQQKQKEPSKISFELPPELCRIIMAPISLSTFYSFTFVPSIMHRLQS 955 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~~~~p~~~~~~~~~~~lPsi~~~~~~ 955 (1396)
..+++|||+|.+ .|.+...+......||+|+|.++
T Consensus 99 ----------~~~~lP~Elc~i--~~~q~~~~~~~~~~~s~m~r~~~ 133 (135)
T PF02170_consen 99 ----------QPIYLPPELCFI--VPGQRYKKKLFTCQPSIMIRFAC 133 (135)
T ss_dssp ----------TCEEEECCGEEE--ETTTBB-SS--HHHHHHHHHHHS
T ss_pred ----------ceEEEChhHhcc--cCCcHHHHhccHHHHHHHHHHHh
Confidence 236799999965 79999999999999999999874
No 186
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.02 E-value=5.1e-09 Score=129.89 Aligned_cols=142 Identities=21% Similarity=0.251 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH----HHhcCCeEE
Q 000607 24 NYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI----KMHTDLKVG 97 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i----~~~~~~~v~ 97 (1396)
+.|...++...+. |++|.+|+|||||.+|-+++.. .....+++.++|.-+.+.-++..+ ...+|+.+.
T Consensus 1146 ~iqtqVf~~~y~~nd~v~vga~~gsgkt~~ae~a~l~------~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~ 1219 (1674)
T KOG0951|consen 1146 PIQTQVFTSLYNTNDNVLVGAPNGSGKTACAELALLR------PDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIV 1219 (1674)
T ss_pred CceEEEEeeeecccceEEEecCCCCchhHHHHHHhcC------CccceEEEEecchHHHHHHHHHHHHHhhccccCceEE
Confidence 3444444444443 6999999999999999875532 335678999999987777655544 445689999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCC--------cHHHHHHHHH
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH--------QYACIMTEFY 169 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~--------~~~~im~~f~ 169 (1396)
.++|+...+ .+.+...+|+++||+.+-.+ + ....+++.|.||.|...+.+ +.+.|...+.
T Consensus 1220 ~l~ge~s~~-------lkl~~~~~vii~tpe~~d~l-q----~iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~ 1287 (1674)
T KOG0951|consen 1220 KLTGETSLD-------LKLLQKGQVIISTPEQWDLL-Q----SIQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLE 1287 (1674)
T ss_pred ecCCccccc-------hHHhhhcceEEechhHHHHH-h----hhhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHH
Confidence 999998777 56777899999999998654 3 56789999999999998531 2333333332
Q ss_pred HhhccCCCCCCCeEEEEeccCCC
Q 000607 170 HRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+.-|+++||-+..+
T Consensus 1288 ---------k~ir~v~ls~~lan 1301 (1674)
T KOG0951|consen 1288 ---------KKIRVVALSSSLAN 1301 (1674)
T ss_pred ---------hheeEEEeehhhcc
Confidence 34578888877655
No 187
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=99.01 E-value=1.4e-07 Score=120.64 Aligned_cols=90 Identities=17% Similarity=0.222 Sum_probs=62.0
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh----cC
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR----RG 447 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr----~g 447 (1396)
...+.+.+..... ...+++||..+....+.++..|... .+. ...+.|.. .+.++++.|+ .|
T Consensus 520 ~~~~~~~i~~l~~-~~gg~LVlFtSy~~l~~v~~~l~~~----~~~-~ll~Q~~~---------~~~~ll~~f~~~~~~~ 584 (697)
T PRK11747 520 TAEMAEFLPELLE-KHKGSLVLFASRRQMQKVADLLPRD----LRL-MLLVQGDQ---------PRQRLLEKHKKRVDEG 584 (697)
T ss_pred HHHHHHHHHHHHh-cCCCEEEEeCcHHHHHHHHHHHHHh----cCC-cEEEeCCc---------hHHHHHHHHHHHhccC
Confidence 4455555555433 3445899999999999999888742 122 23344431 3567887776 46
Q ss_pred CeeEEEEecccccccCCCc--ccEEEEeCCC
Q 000607 448 LVNVIVATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
+-.||++|....||||+|+ |.+||...+|
T Consensus 585 ~~~VL~g~~sf~EGVD~pGd~l~~vII~kLP 615 (697)
T PRK11747 585 EGSVLFGLQSFAEGLDLPGDYLTQVIITKIP 615 (697)
T ss_pred CCeEEEEeccccccccCCCCceEEEEEEcCC
Confidence 7789999999999999987 8888865544
No 188
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=98.97 E-value=2.5e-07 Score=115.41 Aligned_cols=125 Identities=21% Similarity=0.138 Sum_probs=86.5
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH---HhcCCeEE
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK---MHTDLKVG 97 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~---~~~~~~v~ 97 (1396)
.|++.|.-.. .++.++-|+-|.||-|||++|++++. +.-+ .|+.|-|++++..|+.+-++.+. +++|+.|+
T Consensus 76 r~ydvQlig~-l~L~~G~IaEm~TGEGKTL~a~l~ay--l~aL---~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLsvg 149 (870)
T CHL00122 76 RHFDVQLIGG-LVLNDGKIAEMKTGEGKTLVATLPAY--LNAL---TGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLTVG 149 (870)
T ss_pred CCCchHhhhh-HhhcCCccccccCCCCchHHHHHHHH--HHHh---cCCceEEEeCCHHHHHHHHHHHHHHHHHcCCcee
Confidence 3556665554 34456789999999999999987654 2211 46779999999999998655554 57899999
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHH-----HHhHhh--cCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQIL-----LDGLRL--SYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L-----~~~l~~--~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+++... -++..=.+||+.+|..-| .+.+.. .......+.+.|+||++.+.=
T Consensus 150 ~i~~~~~~~------err~aY~~DItYgTn~e~gFDyLRDnm~~~~~~~v~r~~~faIVDEvDSiLI 210 (870)
T CHL00122 150 LIQEGMSSE------ERKKNYLKDITYVTNSELGFDYLRDNMALSLSDVVQRPFNYCIIDEVDSILI 210 (870)
T ss_pred eeCCCCChH------HHHHhcCCCCEecCCccccccchhhccCcChHHhhccccceeeeecchhhee
Confidence 998875443 123333689999998644 333321 112345689999999998763
No 189
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=98.94 E-value=9.2e-09 Score=118.31 Aligned_cols=97 Identities=19% Similarity=0.238 Sum_probs=76.5
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc--CCeeEEEEecccccccC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--GLVNVIVATSILEEGLD 463 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--g~~nvLVaTsvleeGiD 463 (1396)
++.+++-|... ....+...+.+. .+.++.++.|+ +++..|..--..|.+ ++++|||||++.+.|+|
T Consensus 357 ~GDCvV~FSkk--~I~~~k~kIE~~----g~~k~aVIYGs------LPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLN 424 (700)
T KOG0953|consen 357 PGDCVVAFSKK--DIFTVKKKIEKA----GNHKCAVIYGS------LPPETRLAQAALFNDPSNECDVLVASDAIGMGLN 424 (700)
T ss_pred CCCeEEEeehh--hHHHHHHHHHHh----cCcceEEEecC------CCCchhHHHHHHhCCCCCccceEEeecccccccc
Confidence 45555556543 334455556654 45679999998 588888888899987 99999999999999999
Q ss_pred CCcccEEEEeCCC---------CcHHHHHHhhhcccCCCCc
Q 000607 464 VQSCNLVIMFDPS---------RTVCSFIQSRGRARMQNSD 495 (1396)
Q Consensus 464 Ip~~~lVI~fD~p---------~s~~~yiQr~GRA~R~gs~ 495 (1396)
+ ++.-||.+++- -+..+..|-.|||||.||+
T Consensus 425 L-~IrRiiF~sl~Kysg~e~~~it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 425 L-NIRRIIFYSLIKYSGRETEDITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred c-ceeEEEEeecccCCcccceeccHHHHHHHhhcccccccC
Confidence 9 78889988764 4667889999999999864
No 190
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=98.92 E-value=3.2e-07 Score=118.61 Aligned_cols=116 Identities=16% Similarity=0.185 Sum_probs=78.5
Q ss_pred HHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCe-eE
Q 000607 373 VCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLV-NV 451 (1396)
Q Consensus 373 ~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~-nv 451 (1396)
..+...+.........+++||+.+....+.+.+.+... .........|.. .+.+.+++|+.+.- -+
T Consensus 465 ~~~~~~i~~~~~~~~~~~lvlF~Sy~~l~~~~~~~~~~----~~~~~v~~q~~~---------~~~~~l~~f~~~~~~~~ 531 (654)
T COG1199 465 AKLAAYLREILKASPGGVLVLFPSYEYLKRVAERLKDE----RSTLPVLTQGED---------EREELLEKFKASGEGLI 531 (654)
T ss_pred HHHHHHHHHHHhhcCCCEEEEeccHHHHHHHHHHHhhc----CccceeeecCCC---------cHHHHHHHHHHhcCCeE
Confidence 33344443332223449999999999999999998853 111233444442 34589999988655 89
Q ss_pred EEEecccccccCCCc--ccEEEEeCC------------------------------CCcHHHHHHhhhcccCCCC--cEE
Q 000607 452 IVATSILEEGLDVQS--CNLVIMFDP------------------------------SRTVCSFIQSRGRARMQNS--DYL 497 (1396)
Q Consensus 452 LVaTsvleeGiDIp~--~~lVI~fD~------------------------------p~s~~~yiQr~GRA~R~gs--~~i 497 (1396)
+|+|..+.||||+|. +..||.... |.......|.+||+-|..+ .++
T Consensus 532 lv~~gsf~EGVD~~g~~l~~vvI~~lPfp~p~dp~~~~r~~~~~~~g~~~f~~~~l~~A~~~l~QavGRlIR~~~D~G~i 611 (654)
T COG1199 532 LVGGGSFWEGVDFPGDALRLVVIVGLPFPNPDDPLLKARLEFLKRLGGDPFEEFYLPPAVIKLRQAVGRLIRSEDDRGVI 611 (654)
T ss_pred EEeeccccCcccCCCCCeeEEEEEecCCCCCCCHHHHHHHHHHHHhcCCCceEeehHHHHHHHHHhhccccccCCCceEE
Confidence 999999999999998 666774333 3345667899999988553 455
Q ss_pred EEEe
Q 000607 498 LMVK 501 (1396)
Q Consensus 498 ~lv~ 501 (1396)
++++
T Consensus 612 vllD 615 (654)
T COG1199 612 VLLD 615 (654)
T ss_pred EEec
Confidence 5554
No 191
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=98.90 E-value=1.2e-07 Score=111.98 Aligned_cols=103 Identities=17% Similarity=0.240 Sum_probs=81.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhc-CC---CCC---------ceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC---e
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELL-PR---HCT---------WKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL---V 449 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~-p~---~~~---------~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~---~ 449 (1396)
-+.++|||.....+...|..+|.+.. |- ..| .....+.|. .+..+|++.+++|.+.- .
T Consensus 718 ~g~kil~fSq~l~~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~------t~a~~rekLinqfN~e~~lsW 791 (1387)
T KOG1016|consen 718 IGEKILIFSQNLTALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGT------TSAADREKLINQFNSEPGLSW 791 (1387)
T ss_pred cCceEEEeecchhHHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCC------cccchHHHHHHhccCCCCcee
Confidence 47899999999999999999988642 10 001 111223343 36688999999998632 2
Q ss_pred eEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCC
Q 000607 450 NVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNS 494 (1396)
Q Consensus 450 nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs 494 (1396)
-+|++|....-|||+-..|-+|.||..|++.--.|.+-|+-|.|+
T Consensus 792 lfllstrag~lGinLIsanr~~ifda~wnpchdaqavcRvyrYGQ 836 (1387)
T KOG1016|consen 792 LFLLSTRAGSLGINLISANRCIIFDACWNPCHDAQAVCRVYRYGQ 836 (1387)
T ss_pred eeeehhccccccceeeccceEEEEEeecCccccchhhhhhhhhcC
Confidence 578899999999999999999999999999999999999999996
No 192
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=98.89 E-value=7.7e-07 Score=110.76 Aligned_cols=113 Identities=19% Similarity=0.140 Sum_probs=82.2
Q ss_pred hcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH---HHHHHHHhcCCeEEEEeCCCCcccCCc
Q 000607 34 LKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ---QAEAIKMHTDLKVGKYWGDMGVDFWDG 110 (1396)
Q Consensus 34 l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q---~~~~i~~~~~~~v~~~~G~~~~~~~~~ 110 (1396)
+...-|+-|.||-|||++|.+++.--+ -.|+.|-++++.--|+.. |...+-+++|+.|+.+.+++...
T Consensus 97 Lh~G~IAEM~TGEGKTL~atlpaylnA-----L~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLtvg~i~~~~~~~---- 167 (939)
T PRK12902 97 LHEGQIAEMKTGEGKTLVATLPSYLNA-----LTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLSVGLIQQDMSPE---- 167 (939)
T ss_pred hcCCceeeecCCCChhHHHHHHHHHHh-----hcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCeEEEECCCCChH----
Confidence 345789999999999999987654211 156679999999999987 55555567899999998865432
Q ss_pred cchHHhhccCcEEEecHHHH-----HHhHhh--cCccccceeEEEEeccccccC
Q 000607 111 ATWKEEMSKHEVLVMTPQIL-----LDGLRL--SYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 111 ~~~~~~~~~~~ViV~T~q~L-----~~~l~~--~~~~l~~i~llI~DEaH~~~~ 157 (1396)
-+...-.+||+.+|...| .|.+.. .......+++.|+||++.+.=
T Consensus 168 --err~aY~~DItYgTn~e~gFDYLRDnm~~~~~~~vqR~~~faIVDEvDSILI 219 (939)
T PRK12902 168 --ERKKNYACDITYATNSELGFDYLRDNMATDISEVVQRPFNYCVIDEVDSILI 219 (939)
T ss_pred --HHHHhcCCCeEEecCCcccccchhhhhcccccccccCccceEEEecccceee
Confidence 233334799999999777 444432 223346789999999998863
No 193
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.80 E-value=1.6e-08 Score=124.89 Aligned_cols=129 Identities=23% Similarity=0.244 Sum_probs=87.3
Q ss_pred HHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc------CC
Q 000607 26 QLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT------DL 94 (1396)
Q Consensus 26 Q~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~------~~ 94 (1396)
|.++++.+.+ + .+++.++||+|||+++++.+...+. ...+++++|++||++|..|+.+.+.... ++
T Consensus 2 Q~~~~~~i~~al~~~~~lliEA~TGtGKTlAYLlpal~~~~---~~~~~rvlIstpT~~Lq~Ql~~~l~~l~~~~l~~~i 78 (636)
T TIGR03117 2 QALFYLNCLTSLRQKRIGMLEASTGVGKTLAMIMAALTMLK---ERPDQKIAIAVPTLALMGQLWSELERLTAEGLAGPV 78 (636)
T ss_pred HHHHHHHHHHHHhcCCeEEEEcCCCCcHHHHHHHHHHHHHH---hccCceEEEECCcHHHHHHHHHHHHHHHHhhcCCCe
Confidence 6666665543 2 5889999999999999986543322 2236789999999999999998777543 34
Q ss_pred eEEEEeCCCCc---------------------ccC---------------------------------------C-cc--
Q 000607 95 KVGKYWGDMGV---------------------DFW---------------------------------------D-GA-- 111 (1396)
Q Consensus 95 ~v~~~~G~~~~---------------------~~~---------------------------------------~-~~-- 111 (1396)
++..+.|..+. ..| . ..
T Consensus 79 ~~~~lkGr~nYlCl~rl~~~l~~~~~~~~~~i~~W~~~T~~~~~~~~~~~~~~~~~~~~~~~tGD~~el~~~~~~~~~~~ 158 (636)
T TIGR03117 79 QAGFFPGSQEFVSPGALQELLDQSGYDKDPAVQLWIGQGGPLIHEAALIRCMSDAPTKMHWMTHDLKAVATLLNRQDDVT 158 (636)
T ss_pred eEEEEECCcccccHHHHHHHhcccchhHHHHHHHHHhcCCccccccchhccccchhhccCCCCCCHhhccCCcCcchhhh
Confidence 55554444110 000 0 00
Q ss_pred -------------chHHh---hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 112 -------------TWKEE---MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 112 -------------~~~~~---~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
..+.. ...++|||+++..|...+..+.-.+...+.+|||||||+.+
T Consensus 159 ~~~~~~~~~~~~~~aR~~~~~a~~AdivItNHalL~~~~~~~~~iLP~~~~lIiDEAH~L~d 220 (636)
T TIGR03117 159 LAIREDDEDKRLVESREYEAEARRCRILFCTHAMLGLAFRDKWGLLPQPDILIVDEAHLFEQ 220 (636)
T ss_pred ccccCCCcccHHHHHHHHhhccccCCEEEECHHHHHHHhhhhcCCCCCCCEEEEeCCcchHH
Confidence 01111 45789999999999987655433456689999999999974
No 194
>PHA02701 ORF020 dsRNA-binding PKR inhibitor; Provisional
Probab=98.77 E-value=2.1e-08 Score=101.16 Aligned_cols=68 Identities=25% Similarity=0.488 Sum_probs=59.1
Q ss_pred cCCchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhh
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1322 ~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~ 1391 (1396)
..|||+.||||+|..+... .|....+.|+ +.|++.|.++|..++ +|.|.|||+|++.||+.||+.|..
T Consensus 107 ~~DpKS~LQE~~Q~~~~~l-~Y~li~~~GpdH~~~Ftv~V~V~g~~~g-~G~G~SKKeAEQ~AAk~AL~~L~~ 177 (183)
T PHA02701 107 TLNPVSAVNEFCMRTHRPL-EFCETRSGGHDHCPLFTCTIVVSGKVVA-TASGCSKKLARHAACADALTILIN 177 (183)
T ss_pred CCCccHHHHHHHHhcCCCC-eEEEEEeECCCCCceEEEEEEECCEEEE-EEEeCCHHHHHHHHHHHHHHHHHh
Confidence 3699999999999987766 5776666563 569999999999998 999999999999999999999864
No 195
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=98.71 E-value=9.5e-08 Score=109.21 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.||+.|.++.+.+.+ + ++|+.+|||+|||+.+++.+..++...... ++.++++.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00489 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999997776654 3 799999999999999988553332211110 2247999999999988876666653
No 196
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=98.71 E-value=9.5e-08 Score=109.21 Aligned_cols=71 Identities=20% Similarity=0.209 Sum_probs=51.3
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.||+.|.++.+.+.+ + ++|+.+|||+|||+.+++.+..++...... ++.++++.++|..+..|....+++.
T Consensus 8 ~~r~~Q~~~m~~v~~~~~~~~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~~~ 84 (289)
T smart00488 8 EPYPIQYEFMEELKRVLDRGKIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELRKL 84 (289)
T ss_pred CCCHHHHHHHHHHHHHHHcCCcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHHhc
Confidence 479999997776654 3 799999999999999988553332211110 2247999999999988876666653
No 197
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=98.71 E-value=5.8e-08 Score=85.20 Aligned_cols=65 Identities=28% Similarity=0.290 Sum_probs=55.1
Q ss_pred CchhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHh
Q 000607 1324 HPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1324 ~p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1389 (1396)
||++.|+|+|+++++..+.|......|+ ..|+|.|.++|...+ +|.|.|||+||+.||+.||+.|
T Consensus 1 ~p~~~L~e~~~~~~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKRGKPLPEYELVEEEGPDHAPRFTVEVTVGGKITG-EGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHcCCCCCeEEEeeeeCCCCCCeEEEEEEECCEEEE-EeecCCHHHHHHHHHHHHHHhC
Confidence 7999999999998776666776444442 579999999997777 8999999999999999999875
No 198
>KOG1042 consensus Germ-line stem cell division protein Hiwi/Piwi; negative developmental regulator [Cell cycle control, cell division, chromosome partitioning]
Probab=98.70 E-value=1.5e-08 Score=117.79 Aligned_cols=95 Identities=22% Similarity=0.255 Sum_probs=75.5
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhhhc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQ 911 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~~~ 911 (1396)
..+.|.+|.|.|||+.|.+.+|+++.+|+|.|...++ ..||.+||+.+|+++|.+.+||+|..+.-.++.
T Consensus 282 ~~~~glivLT~YNNktyriddvD~~~tP~stF~k~dg-eIs~veYyk~qYni~I~dl~QPlliS~~k~K~~--------- 351 (845)
T KOG1042|consen 282 KNVIGLIVLTRYNNKTYRIDDVDFSQTPLSTFKKDDG-EISFVEYYKKQYNIEITDLNQPLLISEPKDKRP--------- 351 (845)
T ss_pred HHhcceEEEEecCCceeeeeccccCcCccceeeecCc-eeeHhHHHHHhcCeEEeeCCcceEeccCcccCC---------
Confidence 3478899999999999999999999999999987555 789999999999999999999999877444321
Q ss_pred ccCCCCcceeeecccccccccccccHHHH
Q 000607 912 KQKEPSKISFELPPELCRIIMAPISLSTF 940 (1396)
Q Consensus 912 ~~~~~~~~~~~L~pelC~~~~~p~~~~~~ 940 (1396)
+........|+||||++ --+...+-
T Consensus 352 --~g~~~q~~~lIPELc~~--TGLtd~mr 376 (845)
T KOG1042|consen 352 --KGEPPQLAMLIPELCFL--TGLTDEMR 376 (845)
T ss_pred --CCCCccceeeehhhhhc--cCCcHHHH
Confidence 12223346899999975 34444444
No 199
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=98.69 E-value=5.8e-08 Score=84.92 Aligned_cols=64 Identities=30% Similarity=0.383 Sum_probs=55.0
Q ss_pred chhHHHHHHHhcCCCCCcceeeccCCc---eEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHh
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSL 1389 (1396)
Q Consensus 1325 p~~~L~~~~~~~~~~~~~~~~~~~~g~---~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L 1389 (1396)
|++.|+|+|++.++.++++.....++. ..|.|+|+++|..++ .|.|.|||+||..||+.||+.|
T Consensus 1 ~~~~L~e~~~~~~~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNKFPPPYYYIEEEGPSHHRPRFICTVYIDGKEYG-EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCTSSEEEEEEEEESSSSSSEEEEEEEEETTEEEE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCCCCEEEEEEeCCCCCCceEEEEEEECCEEEe-EeccCCHHHHHHHHHHHHHHhC
Confidence 789999999999988776544444432 479999999999998 8999999999999999999986
No 200
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=98.67 E-value=6.6e-08 Score=84.60 Aligned_cols=64 Identities=28% Similarity=0.288 Sum_probs=54.4
Q ss_pred chhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1325 PVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1325 p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
|++.|+|+|+++++ .+.|......| ...|+|.|.++|+.++ +|.|.||++||+.||+.||+.|.
T Consensus 1 p~~~L~e~~~~~~~-~~~y~~~~~~g~~~~~~f~~~v~i~~~~~~-~g~g~sKk~Ak~~AA~~al~~L~ 67 (67)
T smart00358 1 PKSLLQELAQKRGL-PPEYELVKEEGPDHAPRFTVTVKVGGEYTG-EGEGSSKKEAKQRAAEAALRSLK 67 (67)
T ss_pred CchHHHHHHHHCCC-CCEEEEEeeeCCCCCCcEEEEEEECCEEEE-EeccCCHHHHHHHHHHHHHHhcC
Confidence 78999999999998 55566655334 3479999999998887 89999999999999999999873
No 201
>PHA03103 double-strand RNA-binding protein; Provisional
Probab=98.65 E-value=8.2e-08 Score=97.93 Aligned_cols=85 Identities=21% Similarity=0.244 Sum_probs=63.2
Q ss_pred HHHHhhhccccccCccc----ccCCchhHHHHHHHhcCCCCCcceeeccCC---ceEEEEEEEECCEEEEEEEeecCHHH
Q 000607 1304 VFQSIRPLLEPMITPET----MRFHPVRELTEYCQKNHFSMKKPVASRISG---KAAVTVEVQANGRLFEHTFLDADKKT 1376 (1396)
Q Consensus 1304 ~~~~~~~~l~~~~~~~~----~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g---~~~~~~~v~v~~~~~~~~g~g~skk~ 1376 (1396)
--+++.+++.+.+.... -..||++.|+||||+.+... ++ ...+.| .+.|+|.|.++|+.++ +|.|.|||+
T Consensus 86 ~~~~~~~l~~~~i~~~k~~d~K~kNpKS~LQE~~Qk~~~~~-y~-~i~~~Gp~H~p~F~v~V~I~g~~~g-~G~G~SKKe 162 (183)
T PHA03103 86 SMREDNKSFSDTIPYKKIISWKDKNPCTVINEYCQITSRDW-SI-NITSSGPSHSPTFTASVIISGIKFK-PAIGSTKKE 162 (183)
T ss_pred hHHHHHHHhhhhcchhhhhccccCChhHHHHHHHHHhCCCe-EE-EEEeeCCCCCceEEEEEEECCEEEE-EeeeCCHHH
Confidence 33455555555443211 13689999999999877653 33 333345 3569999999999998 899999999
Q ss_pred HHHHHHHHHHHHhhh
Q 000607 1377 AKKVACKEVLKSLRA 1391 (1396)
Q Consensus 1377 Ak~~AA~~AL~~L~~ 1391 (1396)
|++.||+.||+.|..
T Consensus 163 AEQ~AAk~AL~~L~~ 177 (183)
T PHA03103 163 AKNNAAKLAMDKILN 177 (183)
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999999864
No 202
>cd02825 PAZ PAZ domain, named PAZ after the proteins Piwi Argonaut and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the piwi and Dicer families. PAZ functions as a nucleic-acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes. This parent model also contains structures of an archaeal PAZ domain.
Probab=98.50 E-value=1.9e-07 Score=90.87 Aligned_cols=83 Identities=28% Similarity=0.409 Sum_probs=65.2
Q ss_pred cccccCcEEecCcC--CeeEEEEeecCCCCCCCcCccCCCCcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 831 TCKIHNSLVCTPHN--GQIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 831 ~~~~~~~~V~~~~~--~~~Y~v~~i~~dl~p~s~~~~~~~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
...++|..|.+.|+ ++.|.|.++.+..++.+ |+..++...||++||+++||+.+.+++||+|.+...++
T Consensus 30 ~~~lkg~~V~~~h~~~~r~y~i~~i~~~~a~~~-f~~~~~~~isv~dYf~~kY~~~l~~p~~Pll~~~~~~~-------- 100 (115)
T cd02825 30 TKELKGLKVEDTHNPLNRVYRPDGETRLKAPSQ-LKHSDGKEITFADYFKERYNLTLTDLNQPLLIVKFSSK-------- 100 (115)
T ss_pred HHHcCCCEEEEecCCCceEEEEeeEECCCChhh-eecCCCCEEEHHHHHHHHcCCcccCCCCCEEEecCccc--------
Confidence 34578888999997 67999999987666655 65555667899999999999999999999999885432
Q ss_pred hhcccCCCCcceeeeccccccc
Q 000607 909 RQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++||||+|.+
T Consensus 101 --------~~~~~~lp~Elc~i 114 (115)
T cd02825 101 --------KSYSILLPPELCVI 114 (115)
T ss_pred --------CCCceEEchheEEe
Confidence 01235799999964
No 203
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=98.47 E-value=5.6e-05 Score=95.58 Aligned_cols=111 Identities=23% Similarity=0.210 Sum_probs=85.8
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..++++-+.+. ...+..+||-+.++...+.|+++|.. .+++..++.... ..++ .+++. +.|
T Consensus 610 ~~eK~~Aii~ei~~~-~~~GrPVLVGT~SVe~SE~lS~~L~~-----~gI~H~VLNAK~------h~~E-AeIVA--~AG 674 (1112)
T PRK12901 610 KREKYNAVIEEITEL-SEAGRPVLVGTTSVEISELLSRMLKM-----RKIPHNVLNAKL------HQKE-AEIVA--EAG 674 (1112)
T ss_pred HHHHHHHHHHHHHHH-HHCCCCEEEEeCcHHHHHHHHHHHHH-----cCCcHHHhhccc------hhhH-HHHHH--hcC
Confidence 357888888877764 25788999999999999999999997 477766665542 1112 23333 344
Q ss_pred C-eeEEEEecccccccCCC--------cccEEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 448 L-VNVIVATSILEEGLDVQ--------SCNLVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 448 ~-~nvLVaTsvleeGiDIp--------~~~lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
. -.|-|||+++++|.||. .-=+||--..+.|.+---|-+|||||.|
T Consensus 675 ~~GaVTIATNMAGRGTDIkLg~~V~e~GGL~VIgTerheSrRID~QLrGRaGRQG 729 (1112)
T PRK12901 675 QPGTVTIATNMAGRGTDIKLSPEVKAAGGLAIIGTERHESRRVDRQLRGRAGRQG 729 (1112)
T ss_pred CCCcEEEeccCcCCCcCcccchhhHHcCCCEEEEccCCCcHHHHHHHhcccccCC
Confidence 4 46899999999999996 2346888899999999999999999998
No 204
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=98.45 E-value=1.4e-05 Score=98.90 Aligned_cols=139 Identities=18% Similarity=0.086 Sum_probs=84.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.+|-+|+|||||... ++++.+... .++.+++++...+.|+.+.+..++...--....|....+.. -..
T Consensus 52 ~vVRSpMGTGKTtaL---i~wLk~~l~-~~~~~VLvVShRrSL~~sL~~rf~~~~l~gFv~Y~d~~~~~--------i~~ 119 (824)
T PF02399_consen 52 LVVRSPMGTGKTTAL---IRWLKDALK-NPDKSVLVVSHRRSLTKSLAERFKKAGLSGFVNYLDSDDYI--------IDG 119 (824)
T ss_pred EEEECCCCCCcHHHH---HHHHHHhcc-CCCCeEEEEEhHHHHHHHHHHHHhhcCCCcceeeecccccc--------ccc
Confidence 689999999999864 444433322 45778999999999999999999865211222222221110 000
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH--hhccCCCCCCCeEEEEeccCCC
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH--RLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~--~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
...+-+++..+.|.+.... .++++++||+||+--..+. -|..-|+..-. ..+.......++++.|-|+...
T Consensus 120 ~~~~rLivqIdSL~R~~~~---~l~~yDvVIIDEv~svL~q-L~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~ 192 (824)
T PF02399_consen 120 RPYDRLIVQIDSLHRLDGS---LLDRYDVVIIDEVMSVLNQ-LFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND 192 (824)
T ss_pred cccCeEEEEehhhhhcccc---cccccCEEEEehHHHHHHH-HhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH
Confidence 1356677777777655321 2467999999999777653 33333332110 0111123456899999998744
No 205
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=98.22 E-value=6.2e-06 Score=104.94 Aligned_cols=45 Identities=20% Similarity=0.164 Sum_probs=41.6
Q ss_pred CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCC
Q 000607 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQ 492 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~ 492 (1396)
..+.|++-+++-||.|-|++=.+.-++...|...-.|-+||.-|.
T Consensus 501 ~~~fifs~~al~egwd~~~~~~~~~l~~~~s~~~~~q~~gr~lr~ 545 (986)
T PRK15483 501 TRRFLFSKWTLREGWDNPNVFQIAKLRSSGSETSKLQEVGRGLRL 545 (986)
T ss_pred CeEEEEEhHHhhhcCCCCCeEEEEEeccCCchHHHHHHhccceec
Confidence 588999999999999999999999999999999999999998773
No 206
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.09 E-value=8.8e-06 Score=90.94 Aligned_cols=69 Identities=22% Similarity=0.198 Sum_probs=52.3
Q ss_pred chHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHH---hcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYL---LRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~---~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+.+.|.+++..++..+ ++|.+|.|+|||.+.+.++..+... .....++++++++|+..-+++..+.+.+
T Consensus 2 ln~~Q~~Ai~~~~~~~~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 2 LNESQREAIQSALSSNGITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp --HHHHHHHHHHCTSSE-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHcCCCCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 5689999999999985 8999999999998777766655221 1134678899999999999999988887
No 207
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=98.03 E-value=4e-06 Score=103.06 Aligned_cols=160 Identities=22% Similarity=0.252 Sum_probs=94.9
Q ss_pred cchHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc-CC
Q 000607 21 FARNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT-DL 94 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~-~~ 94 (1396)
.+-+||.|.+..+.. + +.|+++++|.|||..++..+..+..... ...-.++++|--..+. |-.++.... ..
T Consensus 295 ~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~--~~~P~Lv~ap~sT~~n-we~e~~~wap~~ 371 (696)
T KOG0383|consen 295 TLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIH--SPGPPLVVAPLSTIVN-WEREFELWAPSF 371 (696)
T ss_pred cccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccC--CCCCceeeccCccccC-CCCchhccCCCc
Confidence 356999999987775 3 7999999999999987765554433221 2233677788755544 344444333 45
Q ss_pred eEEEEeCCCCccc------CC-----------ccchHH-hhccCcEEEecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 95 KVGKYWGDMGVDF------WD-----------GATWKE-EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 95 ~v~~~~G~~~~~~------~~-----------~~~~~~-~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
.+..+.|...... ++ ...|.. ..-..+|.+.+|..... ....+..-+++++|+||+|++.
T Consensus 372 ~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~--~~~il~~v~w~~livde~~rlk 449 (696)
T KOG0383|consen 372 YVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEI--DQSILFSVQWGLLIVDEAHRLK 449 (696)
T ss_pred ccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhccc--CHHHHhhhhcceeEeechhhcc
Confidence 5555666522110 00 011211 11145677777765542 2223445579999999999999
Q ss_pred CCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 157 GKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 157 ~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
++. ..++... .....-+.+++|+||..++
T Consensus 450 n~~------s~~f~~l---~~~~~~~~~lltgtPlqnn 478 (696)
T KOG0383|consen 450 NKQ------SKRFRVL---TAYPIDSKLLLTGTPLQNN 478 (696)
T ss_pred cch------hhhhhhc---cccccchhhhccCCcchhh
Confidence 763 2222111 2334456789999998754
No 208
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=98.00 E-value=1.2e-05 Score=88.52 Aligned_cols=72 Identities=21% Similarity=0.248 Sum_probs=64.2
Q ss_pred ccCCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1321 MRFHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1321 ~~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
...||+.+|+++||.++|+.|.|+...+.|.+ .|+..|.+++.+ .+|+|.|||.||+.||++.|..|...-|
T Consensus 140 ~~~NPI~~L~e~~q~k~~k~P~yelv~E~G~~~~rEFv~q~sv~~~~--~~GkG~sKKiAKRnAAeamLe~l~~~~~ 214 (339)
T KOG3732|consen 140 QVLNPIGRLQELAQAKKWKLPEYELVQESGVPHRREFVIQCSVENFT--EEGKGPSKKIAKRNAAEAMLESLGFVKP 214 (339)
T ss_pred cccChHHHHHHHHHHhCCCCCceEEEeccCCCccceEEEEEEeccee--eecCCchHHHHHHHHHHHHHHHhccCCC
Confidence 35899999999999999999999999999854 499999999987 4899999999999999999999985443
No 209
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.88 E-value=6e-05 Score=97.68 Aligned_cols=99 Identities=17% Similarity=0.205 Sum_probs=67.4
Q ss_pred HHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCC--CCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc---
Q 000607 372 IVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPR--HCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR--- 446 (1396)
Q Consensus 372 v~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~--~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~--- 446 (1396)
...+.+.|.+........++||.++-...+.+...+.+.... +...+..++-+.. ..++.+++++|+.
T Consensus 507 ~~~l~~~i~~~~~~~pgg~lvfFpSy~~l~~v~~~~~~~~~~~~i~~~k~i~~E~~~-------~~~~~~~l~~f~~~~~ 579 (705)
T TIGR00604 507 VRNLGELLVEFSKIIPDGIVVFFPSYSYLENIVSTWKEMGILENIEKKKLIFVETKD-------AQETSDALERYKQAVS 579 (705)
T ss_pred HHHHHHHHHHHhhcCCCcEEEEccCHHHHHHHHHHHHhcCHHHHHhcCCCEEEeCCC-------cchHHHHHHHHHHHHh
Confidence 345566665543344578899999999988888877642100 0011334444432 1467889999965
Q ss_pred -CCeeEEEEe--cccccccCCCc--ccEEEEeCCCC
Q 000607 447 -GLVNVIVAT--SILEEGLDVQS--CNLVIMFDPSR 477 (1396)
Q Consensus 447 -g~~nvLVaT--svleeGiDIp~--~~lVI~fD~p~ 477 (1396)
|.-.||+|+ ..+.||||+++ |..||...+|.
T Consensus 580 ~~~gavL~av~gGk~sEGIDf~~~~~r~ViivGlPf 615 (705)
T TIGR00604 580 EGRGAVLLSVAGGKVSEGIDFCDDLGRAVIMVGIPY 615 (705)
T ss_pred cCCceEEEEecCCcccCccccCCCCCcEEEEEccCC
Confidence 455699999 78999999998 88899888775
No 210
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=97.88 E-value=2.6e-05 Score=69.90 Aligned_cols=68 Identities=28% Similarity=0.264 Sum_probs=54.5
Q ss_pred CCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEE---------EEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFE---------HTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1323 ~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~---------~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
.||++.|.++|++++|..|.|....+.|+. .|++.|.|.+.... ..-...++++||..||+.||..|+
T Consensus 1 k~a~~~L~elC~k~~W~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L~~Lg 80 (80)
T PF14709_consen 1 KSAVSLLNELCQKNKWGPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQALQALG 80 (80)
T ss_pred CCHHHHHHHHHHhcCCCCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHHHhcC
Confidence 489999999999999999999887666643 58889988875541 012346899999999999999874
No 211
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=97.82 E-value=0.00012 Score=81.44 Aligned_cols=126 Identities=23% Similarity=0.145 Sum_probs=85.2
Q ss_pred cccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH---hcCCe
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM---HTDLK 95 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~---~~~~~ 95 (1396)
...|++-|.-+.-...+|+ |+.+.||=|||+++.++....+ + .|+.|=|++...-|+..-++.++. ++|+.
T Consensus 75 g~~p~~vQll~~l~L~~G~-laEm~TGEGKTli~~l~a~~~A--L---~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGls 148 (266)
T PF07517_consen 75 GLRPYDVQLLGALALHKGR-LAEMKTGEGKTLIAALPAALNA--L---QGKGVHVVTSNDYLAKRDAEEMRPFYEFLGLS 148 (266)
T ss_dssp S----HHHHHHHHHHHTTS-EEEESTTSHHHHHHHHHHHHHH--T---TSS-EEEEESSHHHHHHHHHHHHHHHHHTT--
T ss_pred CCcccHHHHhhhhhcccce-eEEecCCCCcHHHHHHHHHHHH--H---hcCCcEEEeccHHHhhccHHHHHHHHHHhhhc
Confidence 3457888888886554545 9999999999999987554222 2 467788899998999986666654 57999
Q ss_pred EEEEeCCCCcccCCccchHHhhccCcEEEecHHHHH-HhHhhcC------ccccceeEEEEecccccc
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILL-DGLRLSY------FKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~-~~l~~~~------~~l~~i~llI~DEaH~~~ 156 (1396)
++.+.+++..+ -+...-.++|+.+|...|. +.|+... .....++++|+|||+.+.
T Consensus 149 v~~~~~~~~~~------~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 149 VGIITSDMSSE------ERREAYAADIVYGTNSEFGFDYLRDNLALSKNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp EEEEETTTEHH------HHHHHHHSSEEEEEHHHHHHHHHHHTT-SSGGG--SSSSSEEEECTHHHHT
T ss_pred cccCccccCHH------HHHHHHhCcccccccchhhHHHHHHHHhhccchhccCCCCEEEEeccceEE
Confidence 99999986432 1223336899999998776 3343221 124678999999999877
No 212
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.77 E-value=3.5e-05 Score=97.68 Aligned_cols=141 Identities=23% Similarity=0.257 Sum_probs=102.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc-------------C--CCCcEEEEEeCCcccHHHHHHHHHHhc--CCeEEEE
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR-------------K--PSPFVAVFLVPKVVLVPQQAEAIKMHT--DLKVGKY 99 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~-------------~--~~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~ 99 (1396)
.++++...|+|||..-+.+.. ..... . ...+-+||++|. ++..||.++|.+|. +++|..|
T Consensus 376 ~~~~ade~~~qk~~~~l~~~l--~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~-aIl~QW~~EI~kH~~~~lKv~~Y 452 (1394)
T KOG0298|consen 376 RVQCADEMGWQKTSEKLILEL--SDLPKLCPSCCSELVKEGENLVETGATLIICPN-AILMQWFEEIHKHISSLLKVLLY 452 (1394)
T ss_pred ceeehhhhhccchHHHHHHHH--hcccccchhhhhHHHhcccceeecCceEEECcH-HHHHHHHHHHHHhccccceEEEE
Confidence 478999999999997654332 22100 0 034669999999 88899999999997 3588888
Q ss_pred eCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhc--------------Cccc------cceeEEEEeccccccCCC
Q 000607 100 WGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLS--------------YFKL------NMIKVLILDECHHARGKH 159 (1396)
Q Consensus 100 ~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~--------------~~~l------~~i~llI~DEaH~~~~~~ 159 (1396)
.|- ....|... .++.++||||+||.+|.+-+.|. +.+. =.|=-|++|||+..-...
T Consensus 453 ~Gi-rk~~~~~~---~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesss 528 (1394)
T KOG0298|consen 453 FGI-RKTFWLSP---FELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSS 528 (1394)
T ss_pred ech-hhhcccCc---hhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchH
Confidence 886 44455554 66779999999999999877654 1111 112247899999998877
Q ss_pred cHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCC
Q 000607 160 QYACIMTEFYHRLLETGDSNLPRIFGMTASPIKS 193 (1396)
Q Consensus 160 ~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~ 193 (1396)
++..-|...+++ -...+.||||+.+
T Consensus 529 S~~a~M~~rL~~---------in~W~VTGTPiq~ 553 (1394)
T KOG0298|consen 529 SAAAEMVRRLHA---------INRWCVTGTPIQK 553 (1394)
T ss_pred HHHHHHHHHhhh---------hceeeecCCchhh
Confidence 777777666654 3578999999875
No 213
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=97.76 E-value=0.0002 Score=79.73 Aligned_cols=153 Identities=20% Similarity=0.127 Sum_probs=93.2
Q ss_pred chHHHHHHHHHHhc-----------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK-----------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~-----------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-+-|.|++-.|-+ ...++-+.||.||..+...+|.+ .+.+ +.++.+++..+..|...-.+.++.
T Consensus 38 LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~--n~l~--Gr~r~vwvS~s~dL~~Da~RDl~D 113 (303)
T PF13872_consen 38 LSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILE--NWLR--GRKRAVWVSVSNDLKYDAERDLRD 113 (303)
T ss_pred ccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHH--HHHc--CCCceEEEECChhhhhHHHHHHHH
Confidence 56789998876642 25899999999998877766652 2232 345678888888998888888886
Q ss_pred hcC--CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh---cCccc---------cceeEEEEecccccc
Q 000607 91 HTD--LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL---SYFKL---------NMIKVLILDECHHAR 156 (1396)
Q Consensus 91 ~~~--~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~---~~~~l---------~~i~llI~DEaH~~~ 156 (1396)
... +.+..+.. |... ...-....|+++||..|...-.. ...++ +--.+|||||||+++
T Consensus 114 IG~~~i~v~~l~~------~~~~--~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~ak 185 (303)
T PF13872_consen 114 IGADNIPVHPLNK------FKYG--DIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAK 185 (303)
T ss_pred hCCCcccceechh------hccC--cCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcC
Confidence 542 22222211 1100 00111467999999999876431 11111 123599999999999
Q ss_pred CCCcH-----H--HHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 157 GKHQY-----A--CIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 157 ~~~~~-----~--~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
+-..- + ....... . .-+.-|++-.|||...
T Consensus 186 n~~~~~~~~sk~g~avl~LQ-~-----~LP~ARvvY~SATgas 222 (303)
T PF13872_consen 186 NLSSGSKKPSKTGIAVLELQ-N-----RLPNARVVYASATGAS 222 (303)
T ss_pred CCCccCccccHHHHHHHHHH-H-----hCCCCcEEEecccccC
Confidence 75321 1 1111111 1 1234579999999865
No 214
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.69 E-value=0.008 Score=71.41 Aligned_cols=116 Identities=12% Similarity=0.143 Sum_probs=88.2
Q ss_pred CCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEeccc--cccc
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSIL--EEGL 462 (1396)
Q Consensus 385 ~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsvl--eeGi 462 (1396)
....++|||+++-..--.|...|++ .++....++--+ +.++...+-..|.+|+.++|+-|.=+ =+=.
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~-----~~~sF~~i~EYt------s~~~isRAR~~F~~G~~~iLL~TER~HFfrRy 366 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKK-----ENISFVQISEYT------SNSDISRARSQFFHGRKPILLYTERFHFFRRY 366 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHh-----cCCeEEEecccC------CHHHHHHHHHHHHcCCceEEEEEhHHhhhhhc
Confidence 4567899999999888889999985 477877776654 77888899999999999999999643 3556
Q ss_pred CCCcccEEEEeCCCCcHHHHHHhhhcccCCC--------CcEEEEEecCCcchHHHH
Q 000607 463 DVQSCNLVIMFDPSRTVCSFIQSRGRARMQN--------SDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 463 DIp~~~lVI~fD~p~s~~~yiQr~GRA~R~g--------s~~i~lv~~~~~~~~~~i 511 (1396)
.|..+..||.|.+|.++.-|-.-.+-..... ..+.++.+.-|.-..++|
T Consensus 367 ~irGi~~viFY~~P~~p~fY~El~n~~~~~~~~~~~~~~~~~~~lysk~D~~~LErI 423 (442)
T PF06862_consen 367 RIRGIRHVIFYGPPENPQFYSELLNMLDESSGGEVDAADATVTVLYSKYDALRLERI 423 (442)
T ss_pred eecCCcEEEEECCCCChhHHHHHHhhhcccccccccccCceEEEEecHhHHHHHHHH
Confidence 7888999999999999877766554433322 467778776654444443
No 215
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.67 E-value=0.00017 Score=85.39 Aligned_cols=135 Identities=22% Similarity=0.209 Sum_probs=93.6
Q ss_pred cCCCcccchHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 15 SADTLPFARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 15 ~~~~~~~~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
+......+..-|..|++.++.+- .||.+|+|+|||.+...++.++++. ....+|+.+|+..-|+|.++.|.+. |
T Consensus 404 s~~~lpkLN~SQ~~AV~~VL~rplsLIQGPPGTGKTvtsa~IVyhl~~~----~~~~VLvcApSNiAVDqLaeKIh~t-g 478 (935)
T KOG1802|consen 404 SVPNLPKLNASQSNAVKHVLQRPLSLIQGPPGTGKTVTSATIVYHLARQ----HAGPVLVCAPSNIAVDQLAEKIHKT-G 478 (935)
T ss_pred cCCCchhhchHHHHHHHHHHcCCceeeecCCCCCceehhHHHHHHHHHh----cCCceEEEcccchhHHHHHHHHHhc-C
Confidence 33334557889999999999984 9999999999999998888877664 3445999999999999999999874 5
Q ss_pred CeEEEEeCCCCc------------------------------------ccCCc--------cchHHhhccCcEEEecHHH
Q 000607 94 LKVGKYWGDMGV------------------------------------DFWDG--------ATWKEEMSKHEVLVMTPQI 129 (1396)
Q Consensus 94 ~~v~~~~G~~~~------------------------------------~~~~~--------~~~~~~~~~~~ViV~T~q~ 129 (1396)
++|.-++....- +..+. ..-.+.+..++||.||.-.
T Consensus 479 LKVvRl~aksRE~~~S~vs~L~lh~~~~~~~~pELq~l~klkde~gelS~sD~~k~~~lk~~~e~ell~~AdVIccTcv~ 558 (935)
T KOG1802|consen 479 LKVVRLCAKSREDIESDVSFLSLHEQLRNMDKPELQKLLKLKDEGGELSSSDEKKYRKLKRAAEKELLNQADVICCTCVG 558 (935)
T ss_pred ceEeeeehhhhhhccCCccHHHHHHHHhccCcHHHHHHHhhhhhcccccchhhHHHHHHHHHHHHHHHhhcCEEEEeccc
Confidence 666544332100 00000 0123344578999999632
Q ss_pred HHHhHhhcCccccceeEEEEeccccccCC
Q 000607 130 LLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 130 L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
.-+. .++-.++..+++||+-.+...
T Consensus 559 Agd~----rl~~~kfr~VLiDEaTQatEp 583 (935)
T KOG1802|consen 559 AGDR----RLSKFKFRTVLIDEATQATEP 583 (935)
T ss_pred ccch----hhccccccEEEEecccccCCc
Confidence 2211 122246789999999988764
No 216
>cd02846 PAZ_argonaute_like PAZ domain, argonaute_like subfamily. Argonaute is part of the RNA-induced silencing complex (RISC), and is an endonuclease that plays a key role in the RNA interference pathway. The PAZ domain has been named after the proteins Piwi,Argonaut, and Zwille. PAZ is found in two families of proteins that are essential components of RNA-mediated gene-silencing pathways, including RNA interference, the Piwi and Dicer families. PAZ functions as a nucleic acid binding domain, with a strong preference for single-stranded nucleic acids (RNA or DNA) or RNA duplexes with single-stranded 3' overhangs. It has been suggested that the PAZ domain provides a unique mode for the recognition of the two 3'-terminal nucleotides in single-stranded nucleic acids and buries the 3' OH group, and that it might recognize characteristic 3' overhangs in siRNAs within RISC (RNA-induced silencing) and other complexes.
Probab=97.63 E-value=9.2e-05 Score=72.30 Aligned_cols=79 Identities=25% Similarity=0.393 Sum_probs=61.3
Q ss_pred cccCcEEecCcC---CeeEEEEeecCCCCCCCcCccCCC-CcccHHHHHHHHhCceeccCCCceEeeecccccccccchh
Q 000607 833 KIHNSLVCTPHN---GQIYCITGVLGHLNANSLFTRNNG-SVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKC 908 (1396)
Q Consensus 833 ~~~~~~V~~~~~---~~~Y~v~~i~~dl~p~s~~~~~~~-~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~ 908 (1396)
.+++..|.+.|. ++.|.|.++..+..+...|+..++ ...|+.+||+.+|++.+.++++|+|.+..-
T Consensus 31 ~lkgl~v~~~~~~~~~r~~~i~~l~~~~~~~~~F~~~~~~~~isV~dYf~~~y~~~l~~p~lP~v~~g~~---------- 100 (114)
T cd02846 31 ALKGLKVEVTHRGNTNRKYKIKGLSAEPASQQTFELKDGEKEISVADYFKEKYNIRLKYPNLPCLQVGRK---------- 100 (114)
T ss_pred HhCCCEEEEEcCCCCCceEEEeeccCCCccceEEEcCCCCcEEEHHHHHHHHcCCcccCCCCCEEEeCCC----------
Confidence 356766777776 689999999887777778875444 367999999999999999999999987611
Q ss_pred hhcccCCCCcceeeeccccccc
Q 000607 909 RQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 909 ~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++|+|+|.+
T Consensus 101 ---------~~~~~~P~Elc~i 113 (114)
T cd02846 101 ---------GKPNYLPMELCNI 113 (114)
T ss_pred ---------CCCcEecceeEEe
Confidence 1124699999964
No 217
>KOG3769 consensus Ribonuclease III domain proteins [Translation, ribosomal structure and biogenesis]
Probab=97.63 E-value=0.00028 Score=76.04 Aligned_cols=163 Identities=18% Similarity=0.199 Sum_probs=119.7
Q ss_pred CCHHHHHHHhcccCcc-------------------ccCCchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccc
Q 000607 976 IPTIKVLEAITTKKCQ-------------------EDFHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIIS 1036 (1396)
Q Consensus 976 ~~~~~l~~AlT~~s~~-------------------~~~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~ 1036 (1396)
+..+.++.|||-+|+. ...+|+-|--.|-.|+.+.++.++-++||..++..++.+-.-+++
T Consensus 77 is~~~l~ka~t~~s~~~~~kv~~~~lg~~~~~~~~~~~~N~~L~~~Gk~~~~~~v~~~l~~kyPrlP~E~l~ai~n~ll~ 156 (333)
T KOG3769|consen 77 ISLSYLLKALTNLSFSYPEKVLRQQLGAETVAQVNPQYSNEELVEIGKQFLSFYVTEYLKCKYPRLPEEGLHAIVNGLLG 156 (333)
T ss_pred ccHHHHHHHHhCccccchHHHhhhhhcchhhhhhcCCcchHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHhhh
Confidence 4446677777776653 123899999999999999999999999999999999999999999
Q ss_pred cHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCccCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh
Q 000607 1037 NAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE 1116 (1396)
Q Consensus 1037 n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~ 1116 (1396)
.+.|+.+|..+|+.++++++.|.+. +. ...+++.++++-||+|+++...|.
T Consensus 157 ee~LahiAt~lGie~l~~seeFp~~-----~e------------------------isq~ess~~aI~Al~~~~~~ek~~ 207 (333)
T KOG3769|consen 157 EEVLAHIATHLGIEELGLSEEFPKV-----GE------------------------ISQDESSRRAIGALLGSVGLEKGF 207 (333)
T ss_pred HHHHHHHHHHhhHHHHhhcccCCCc-----hh------------------------hhHHHHHHHHHHHHHhcccHHHHH
Confidence 9999999999999999998877421 11 023488999999999999999998
Q ss_pred hHHHHHHhhcCccccCCCcccccccccChhhHHhHHHHHHHcCcccCCHHHHHHH
Q 000607 1117 NVGLIFLDRIGIKVDFVNVPYQRQFQVHAERLVNVRHLESLLNYSFRDPSLLVEA 1171 (1396)
Q Consensus 1117 ~~a~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~lgy~f~~~~ll~~A 1171 (1396)
..+.+|+.-=-...++....+ .... .....+..+.++.|.+=--+.|+.++
T Consensus 208 ~~v~dFI~~qi~~k~L~~~~m---~ql~-~P~~~L~~lckr~~l~epe~Rll~es 258 (333)
T KOG3769|consen 208 NFVRDFINDQILSKDLDPREM---WQLQ-WPRRLLSRLCKRRGLKEPESRLLAES 258 (333)
T ss_pred HHHHHHHHHHhhhhccchHhh---cccc-chHHHHHHHHHHcCCCCchhHHHHHh
Confidence 888888643211111110000 0000 11245677778888776666777665
No 218
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=97.56 E-value=0.011 Score=74.63 Aligned_cols=111 Identities=20% Similarity=0.175 Sum_probs=79.8
Q ss_pred ccHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 368 LTEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 368 ~s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
...|..+.++-+... ...+..+||-+.+...++.++++|.+. +++-.++.-.. ..|+.-+-.+ .|
T Consensus 411 ~~~K~~Aiv~~I~~~-~~~gqPvLvgT~sie~SE~ls~~L~~~-----~i~h~VLNAk~--------h~~EA~Iia~-AG 475 (822)
T COG0653 411 EEEKFKAIVEDIKER-HEKGQPVLVGTVSIEKSELLSKLLRKA-----GIPHNVLNAKN--------HAREAEIIAQ-AG 475 (822)
T ss_pred hHHHHHHHHHHHHHH-HhcCCCEEEcCcceecchhHHHHHHhc-----CCCceeecccc--------HHHHHHHHhh-cC
Confidence 356777777766663 357889999999999999999999974 66666665543 2334333333 34
Q ss_pred C-eeEEEEecccccccCCCccc-----------EEEEeCCCCcHHHHHHhhhcccCCC
Q 000607 448 L-VNVIVATSILEEGLDVQSCN-----------LVIMFDPSRTVCSFIQSRGRARMQN 493 (1396)
Q Consensus 448 ~-~nvLVaTsvleeGiDIp~~~-----------lVI~fD~p~s~~~yiQr~GRA~R~g 493 (1396)
+ --+-|||+++++|-||.--. +||--....|-+---|-+||+||.|
T Consensus 476 ~~gaVTiATNMAGRGTDIkLg~~~~~V~~lGGL~VIgTERhESRRIDnQLRGRsGRQG 533 (822)
T COG0653 476 QPGAVTIATNMAGRGTDIKLGGNPEFVMELGGLHVIGTERHESRRIDNQLRGRAGRQG 533 (822)
T ss_pred CCCccccccccccCCcccccCCCHHHHHHhCCcEEEecccchhhHHHHHhhcccccCC
Confidence 4 35889999999999995433 3555555556555569999999998
No 219
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.52 E-value=0.00017 Score=85.58 Aligned_cols=95 Identities=18% Similarity=0.188 Sum_probs=66.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
-++|.+..|||||++|+.+++.+ .....+..++++++..+|.......+.... ...
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l---~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~-------~~~-------------- 58 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL---QNSEEGKKVLYLCGNHPLRNKLREQLAKKY-------NPK-------------- 58 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh---hccccCCceEEEEecchHHHHHHHHHhhhc-------ccc--------------
Confidence 37899999999999999888766 223356779999999999888888777643 000
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.....+..+..+.+.+.........+++|||||||++..
T Consensus 59 --~~~~~~~~~~~~i~~~~~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 59 --LKKSDFRKPTSFINNYSESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred --hhhhhhhhhHHHHhhcccccccCCcCCEEEEehhHhhhh
Confidence 122334555555544332234457899999999999976
No 220
>PF13245 AAA_19: Part of AAA domain
Probab=97.49 E-value=0.00029 Score=62.77 Aligned_cols=60 Identities=22% Similarity=0.201 Sum_probs=45.3
Q ss_pred HHHHHHhc-CC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 28 EALENALK-QN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 28 e~~~~~l~-~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
|++..++. ++ ++|.+|.|||||.+++-.+.++......+ ++++++++|++..+.+..+.+
T Consensus 1 ~av~~al~~~~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~-~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 1 EAVRRALAGSPLFVVQGPPGTGKTTTLAARIAELLAARADP-GKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred CHHHHHHhhCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCC-CCeEEEECCCHHHHHHHHHHH
Confidence 35665555 44 56799999999988887777665433334 788999999998888877777
No 221
>KOG3732 consensus Staufen and related double-stranded-RNA-binding proteins [Intracellular trafficking, secretion, and vesicular transport; Transcription]
Probab=97.47 E-value=0.00028 Score=78.15 Aligned_cols=69 Identities=25% Similarity=0.208 Sum_probs=58.2
Q ss_pred CCchhHHHHHHHhcCCCCCcceeeccCCce---EEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhCC
Q 000607 1323 FHPVRELTEYCQKNHFSMKKPVASRISGKA---AVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASFP 1394 (1396)
Q Consensus 1323 ~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~---~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~~ 1394 (1396)
..|++.|+|++.+.+..+. |++.+++|+. .|+++|.|+... ++|.|.|||.||++||+.+|+.|+.--|
T Consensus 38 KS~IS~l~E~~~r~~~~v~-fevl~eeGp~H~~~fv~rvtvg~~~--a~GeG~sKK~AKh~AA~~~L~~lk~l~~ 109 (339)
T KOG3732|consen 38 KSPISLLQEYGLRRGLTPV-YEVLREEGPPHMPNFVFRVTVGEIT--ATGEGKSKKLAKHRAAEALLKELKKLPP 109 (339)
T ss_pred CChHHHHHHHHHHhCCCcc-eeeeeccCCccCCCeEEEEEEeeeE--EecCCCchhHHHHHHHHHHHHHHhcCCC
Confidence 7899999999999887655 6777877754 499999999543 5999999999999999999999986443
No 222
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.45 E-value=0.0015 Score=80.27 Aligned_cols=152 Identities=23% Similarity=0.246 Sum_probs=91.6
Q ss_pred HHHHHHHHHhcCC-EEEEeCCCchHHHHHHH-HHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 25 YQLEALENALKQN-TIVFLETGSGKTLIAIM-LLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 25 yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iail-li~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
|-.++++....++ ++|-..||+|||..... ++..+.+.. .....-+.+--|++..+.-.++.+.+.-+..++..+|-
T Consensus 382 ~~~~i~q~v~dn~v~~I~getgcgk~tq~aq~iLe~~~~ns-~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy 460 (1282)
T KOG0921|consen 382 YRSEILQAVAENRVVIIKGETGCGKSTQVAQFLLESFLENS-NGASFNAVVSQPRRISAISLAERVANERGEEVGETCGY 460 (1282)
T ss_pred HHHHHHHHHhcCceeeEeecccccchhHHHHHHHHHHhhcc-ccccccceeccccccchHHHHHHHHHhhHHhhcccccc
Confidence 4444554444554 88999999999766554 444333211 11223356666888777777777766554444444443
Q ss_pred CCcccCCccchHHhhc--cCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 103 MGVDFWDGATWKEEMS--KHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~--~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
++.. ..... .--|++||-+.+++++..+. ..++++|+||.|..--+..+-.++..-.. .....
T Consensus 461 -~vRf------~Sa~prpyg~i~fctvgvllr~~e~gl---rg~sh~i~deiherdv~~dfll~~lr~m~-----~ty~d 525 (1282)
T KOG0921|consen 461 -NVRF------DSATPRPYGSIMFCTVGVLLRMMENGL---RGISHVIIDEIHERDVDTDFVLIVLREMI-----STYRD 525 (1282)
T ss_pred -cccc------cccccccccceeeeccchhhhhhhhcc---cccccccchhhhhhccchHHHHHHHHhhh-----ccchh
Confidence 1111 11111 34588999999999988764 47889999999987766555544322110 11233
Q ss_pred CeEEEEeccCCC
Q 000607 181 PRIFGMTASPIK 192 (1396)
Q Consensus 181 p~ilgLTATp~~ 192 (1396)
-++++|+||...
T Consensus 526 l~v~lmsatIdT 537 (1282)
T KOG0921|consen 526 LRVVLMSATIDT 537 (1282)
T ss_pred hhhhhhhcccch
Confidence 467889998754
No 223
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.38 E-value=0.00069 Score=85.96 Aligned_cols=67 Identities=22% Similarity=0.259 Sum_probs=55.9
Q ss_pred ccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 20 PFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..+-+.|.+++..++.. .++|.+|+|+|||.+++.++.++.. .++++++++||..-|.+..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~~~~lI~GpPGTGKT~t~~~ii~~~~~-----~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSKDLFLIHGPPGTGKTRTLVELIRQLVK-----RGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 34789999999999974 6899999999999998887776543 3558999999998888888888763
No 224
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=97.36 E-value=0.00039 Score=82.61 Aligned_cols=64 Identities=19% Similarity=0.199 Sum_probs=53.7
Q ss_pred cchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 21 FARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.+-+-|..++..+.+. + .+|.+|+|+|||.+-+.+|..+.. .++++++++||..-++...+.+.
T Consensus 185 ~ln~SQk~Av~~~~~~k~l~~I~GPPGTGKT~TlvEiI~qlvk-----~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 185 NLNSSQKAAVSFAINNKDLLIIHGPPGTGKTRTLVEIISQLVK-----QKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred cccHHHHHHHHHHhccCCceEeeCCCCCCceeeHHHHHHHHHH-----cCCeEEEEcCchHHHHHHHHHhc
Confidence 4788999999999987 5 889999999999998888876644 46889999999988888877543
No 225
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.31 E-value=0.00016 Score=90.11 Aligned_cols=112 Identities=22% Similarity=0.292 Sum_probs=85.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---CCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
|..+-+|||+|||..|-+.+... ....++.++++++|.++|+..-.+...+.. |++++..+|+...+
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~---~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd------- 1014 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRA---LSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPD------- 1014 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHH---hccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCC-------
Confidence 68899999999999998866543 234567889999999999887555554322 78899999986555
Q ss_pred HHhhccCcEEEecHHHHHHhHh--hcCccccceeEEEEeccccccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLR--LSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
-....+.+++|+||+......+ ...-.+.+++++|+||.|.+..+
T Consensus 1015 ~~~v~~~~~~ittpek~dgi~Rsw~~r~~v~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1015 VKAVREADIVITTPEKWDGISRSWQTRKYVQSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred hhheecCceEEcccccccCccccccchhhhccccceeecccccccCC
Confidence 2445579999999998876655 22334578999999999998864
No 226
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.29 E-value=0.00065 Score=73.27 Aligned_cols=64 Identities=20% Similarity=0.237 Sum_probs=43.4
Q ss_pred chHHHHHHHHHHhcC--C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 22 ARNYQLEALENALKQ--N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
+.+-|.+++..++.. + ++|.++.|+|||.+...+...+.. .+.++++++||. ..+..+++..+.
T Consensus 2 L~~~Q~~a~~~~l~~~~~~~~l~G~aGtGKT~~l~~~~~~~~~-----~g~~v~~~apT~----~Aa~~L~~~~~~ 68 (196)
T PF13604_consen 2 LNEEQREAVRAILTSGDRVSVLQGPAGTGKTTLLKALAEALEA-----AGKRVIGLAPTN----KAAKELREKTGI 68 (196)
T ss_dssp S-HHHHHHHHHHHHCTCSEEEEEESTTSTHHHHHHHHHHHHHH-----TT--EEEEESSH----HHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhcCCeEEEEEECCCCCHHHHHHHHHHHHHh-----CCCeEEEECCcH----HHHHHHHHhhCc
Confidence 567899999999864 3 678899999999976554443322 357899999995 444555554443
No 227
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=97.26 E-value=0.00069 Score=72.42 Aligned_cols=55 Identities=24% Similarity=0.222 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...|..+++.+++.+ +++.+|.|||||+.|+....++. ....-+++++.-|.++.
T Consensus 6 ~~~Q~~~~~al~~~~~v~~~G~AGTGKT~LA~a~Al~~v---~~g~~~kiii~Rp~v~~ 61 (205)
T PF02562_consen 6 NEEQKFALDALLNNDLVIVNGPAGTGKTFLALAAALELV---KEGEYDKIIITRPPVEA 61 (205)
T ss_dssp SHHHHHHHHHHHH-SEEEEE--TTSSTTHHHHHHHHHHH---HTTS-SEEEEEE-S--T
T ss_pred CHHHHHHHHHHHhCCeEEEECCCCCcHHHHHHHHHHHHH---HhCCCcEEEEEecCCCC
Confidence 568999999999764 88999999999999988655443 23556778888888754
No 228
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.14 E-value=0.002 Score=67.63 Aligned_cols=81 Identities=22% Similarity=0.322 Sum_probs=57.4
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec--ccccccC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS--ILEEGLD 463 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs--vleeGiD 463 (1396)
...+++||+++....+.+...++..... .++. .+..+ .....++++.|++++-.||+|+. .+.||||
T Consensus 8 ~~g~~lv~f~Sy~~l~~~~~~~~~~~~~-~~~~-v~~q~---------~~~~~~~l~~~~~~~~~il~~v~~g~~~EGiD 76 (167)
T PF13307_consen 8 VPGGVLVFFPSYRRLEKVYERLKERLEE-KGIP-VFVQG---------SKSRDELLEEFKRGEGAILLAVAGGSFSEGID 76 (167)
T ss_dssp CSSEEEEEESSHHHHHHHHTT-TSS-E--ETSC-EEEST---------CCHHHHHHHHHCCSSSEEEEEETTSCCGSSS-
T ss_pred CCCCEEEEeCCHHHHHHHHHHHHhhccc-ccce-eeecC---------cchHHHHHHHHHhccCeEEEEEecccEEEeec
Confidence 4579999999999999999888853110 1221 22222 24678999999999999999998 9999999
Q ss_pred CCc--ccEEEEeCCCC
Q 000607 464 VQS--CNLVIMFDPSR 477 (1396)
Q Consensus 464 Ip~--~~lVI~fD~p~ 477 (1396)
+|+ |..||...+|.
T Consensus 77 ~~~~~~r~vii~glPf 92 (167)
T PF13307_consen 77 FPGDLLRAVIIVGLPF 92 (167)
T ss_dssp -ECESEEEEEEES---
T ss_pred CCCchhheeeecCCCC
Confidence 997 88999877763
No 229
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.04 E-value=0.0022 Score=69.09 Aligned_cols=135 Identities=20% Similarity=0.202 Sum_probs=85.5
Q ss_pred CcccchHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 18 TLPFARNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 18 ~~~~~r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
..+..|+-|.++....++ .|.+..+-+|.|||-+.+=++..+ + ..+.+.+.++||. +|..|..+.++..++
T Consensus 20 ~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~---L-Adg~~LvrviVpk-~Ll~q~~~~L~~~lg 94 (229)
T PF12340_consen 20 SNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALA---L-ADGSRLVRVIVPK-ALLEQMRQMLRSRLG 94 (229)
T ss_pred cCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHH---H-cCCCcEEEEEcCH-HHHHHHHHHHHHHHH
Confidence 356689999999999887 389999999999998864333221 2 2345678888998 999999998887542
Q ss_pred ----CeEEE--EeCCCCcccCCccchH----HhhccCcEEEecHHHHHHhHhhc-------C-----------cccccee
Q 000607 94 ----LKVGK--YWGDMGVDFWDGATWK----EEMSKHEVLVMTPQILLDGLRLS-------Y-----------FKLNMIK 145 (1396)
Q Consensus 94 ----~~v~~--~~G~~~~~~~~~~~~~----~~~~~~~ViV~T~q~L~~~l~~~-------~-----------~~l~~i~ 145 (1396)
-++.. +.-+...+.-...... .......|+++||+.++...-.+ . -.+++-.
T Consensus 95 ~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~~~~ 174 (229)
T PF12340_consen 95 GLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLDEHS 174 (229)
T ss_pred HHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhcC
Confidence 23322 2222222211111122 22246789999999887532211 1 0123345
Q ss_pred EEEEeccccccC
Q 000607 146 VLILDECHHARG 157 (1396)
Q Consensus 146 llI~DEaH~~~~ 157 (1396)
-=|+||||....
T Consensus 175 rdilDEsDe~L~ 186 (229)
T PF12340_consen 175 RDILDESDEILS 186 (229)
T ss_pred CeEeECchhccC
Confidence 568899997764
No 230
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=96.99 E-value=0.0018 Score=61.30 Aligned_cols=109 Identities=21% Similarity=0.196 Sum_probs=65.9
Q ss_pred chhhhhhHHHhHHHHHHHHHHhCCCCCchHHHHHHHHhcCchHHHHHHHHcCCchHHhcCChhHHHHHHHhHhhhhhhcc
Q 000607 1187 QRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL 1266 (1396)
Q Consensus 1187 erLEfLGDavL~~~v~~~l~~~~p~~~~~~l~~~r~~lv~n~~La~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~ 1266 (1396)
=-|.|+||||+++.|-.|+...+.. .|..||..-.+.||.+.-|.+-..+ ..++. ..-.+.+++-.+...
T Consensus 16 laLAy~GDAV~e~yVR~~~l~~g~~-k~~~lH~~a~~~VsAk~QA~il~~~--~~~Lt-------e~E~~I~KRgRNaks 85 (132)
T COG1939 16 LALAYLGDAVYELYVREYLLLKGKT-KPNDLHKRATAYVSAKAQALILKAL--LEFLT-------EEEEEIVKRGRNAKS 85 (132)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcccC-ChHHHHHHHHHHhhHHHHHHHHHHH--HHHhh-------HHHHHHHHHhccccc
Confidence 3589999999999999999876443 7999999999999999888775432 11211 111111111111111
Q ss_pred CCCCCcccccCCC-hhhHHHHHHHhhheeeecCCChHHHHHHhhh
Q 000607 1267 GSTFGWESVTSFP-KALGDIIESLAGAIFVDSGCNREVVFQSIRP 1310 (1396)
Q Consensus 1267 ~~~~~~~~~~~~~-k~l~d~~EA~iGAi~~d~g~~~~~~~~~~~~ 1310 (1396)
+ ..+-. .+++ =-.|.-|||+||.+|+-... ++..+++..
T Consensus 86 ~-T~~kn--~dv~tYr~sTgfEAliGyLyL~~~~--eRL~ell~~ 125 (132)
T COG1939 86 G-TKPKN--TDVETYRMSTGFEALIGYLYLTKQE--ERLEELLNK 125 (132)
T ss_pred C-CCCCC--CChHHHHHhhhHHHHHHHHHHcccH--HHHHHHHHH
Confidence 0 00000 0111 14788899999999997755 344444443
No 231
>PLN03202 protein argonaute; Provisional
Probab=96.78 E-value=0.0016 Score=85.84 Aligned_cols=80 Identities=24% Similarity=0.295 Sum_probs=62.8
Q ss_pred ccccCcEEecCcCCeeEEEEeecCCCCCCCcCccCC---------CCcccHHHHHHHHhCceeccC-CCceEeeeccccc
Q 000607 832 CKIHNSLVCTPHNGQIYCITGVLGHLNANSLFTRNN---------GSVTTYKKHYEERYGIQLCFD-REPLLNGRRIFHV 901 (1396)
Q Consensus 832 ~~~~~~~V~~~~~~~~Y~v~~i~~dl~p~s~~~~~~---------~~~~ty~~y~~~k~~~~i~~~-~QPll~~~~~~~~ 901 (1396)
..+++..|.+.|+++.|.|.++.++.++...|+..+ +...|+.+||+++|+++|.++ ++|+|.+.+
T Consensus 293 ~~lkGl~V~t~~~~k~yrI~~i~~~~a~~~~F~~~~~~~~~~~~~~~~iSv~dYfk~~Yni~l~~p~~lPlv~~g~---- 368 (900)
T PLN03202 293 RMLKNLRVKVSPSNQEYKITGLSEKPCKEQTFSLKQRNGNGNEVETVEITVYDYFVKHRGIELRYSGDLPCINVGK---- 368 (900)
T ss_pred HHhcCCEEEEecCCceEEEeeccCCCCcceEEEcccCCcccccCCcceEEHHHHHHHHcCccccCCCCCCEEEcCC----
Confidence 346778899999999999999999999988886432 235799999999999999986 889885431
Q ss_pred ccccchhhhcccCCCCcceeeeccccccc
Q 000607 902 QNYLSKCRQQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 902 ~n~l~~~~~~~~~~~~~~~~~L~pelC~~ 930 (1396)
....++||||+|.+
T Consensus 369 ---------------~~~~~ylP~ElC~i 382 (900)
T PLN03202 369 ---------------PKRPTYFPIELCSL 382 (900)
T ss_pred ---------------CCCCeEEcceeeEc
Confidence 01125799999975
No 232
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=96.78 E-value=0.0045 Score=77.63 Aligned_cols=119 Identities=20% Similarity=0.138 Sum_probs=70.4
Q ss_pred HHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 24 NYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
+.|++++..++.++ ++|.++.|+|||.+...++..+.......++.++.+.+||---+....+.+..... .+.-.
T Consensus 148 ~~Qk~A~~~al~~~~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~----~l~~~ 223 (586)
T TIGR01447 148 NWQKVAVALALKSNFSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVK----NLAAA 223 (586)
T ss_pred HHHHHHHHHHhhCCeEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhc----ccccc
Confidence 79999999999985 88999999999998777766554432221235799999995554444444443211 00000
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhh--c----CccccceeEEEEeccccccC
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--S----YFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--~----~~~l~~i~llI~DEaH~~~~ 157 (1396)
........+-.+|-..|+..... . .-+...+++||+|||-.+..
T Consensus 224 -----------~~~~~~~~~~a~TiHrlLg~~~~~~~~~~~~~~~l~~dvlIiDEaSMvd~ 273 (586)
T TIGR01447 224 -----------EALIAALPSEAVTIHRLLGIKPDTKRFRHHERNPLPLDVLVVDEASMVDL 273 (586)
T ss_pred -----------hhhhhccccccchhhhhhcccCCcchhhhcccCCCcccEEEEcccccCCH
Confidence 00011112234555555533211 0 11234679999999998754
No 233
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.63 E-value=0.0053 Score=71.28 Aligned_cols=64 Identities=19% Similarity=0.286 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHHHHH
Q 000607 23 RNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 23 r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+|-|.+-...+++ |++++-||+|+|||..-+.+|-.+ +...+ ...+.++..-|++=++....++
T Consensus 18 YPEQ~~YM~elKrsLDakGh~llEMPSGTGKTvsLLSli~aY--q~~~p~~~~KliYCSRTvpEieK~l~El 87 (755)
T KOG1131|consen 18 YPEQYEYMRELKRSLDAKGHCLLEMPSGTGKTVSLLSLIIAY--QLHYPDEHRKLIYCSRTVPEIEKALEEL 87 (755)
T ss_pred CHHHHHHHHHHHHhhccCCcEEEECCCCCCcchHHHHHHHHH--HHhCCcccceEEEecCcchHHHHHHHHH
Confidence 4556554444443 589999999999999877666543 22223 4555666666665554444433
No 234
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.60 E-value=0.0018 Score=76.39 Aligned_cols=112 Identities=21% Similarity=0.222 Sum_probs=64.1
Q ss_pred EeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC----CeEEEEeCCCCcccCCccchHHh
Q 000607 41 FLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD----LKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 41 ~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~----~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.|.||||||++.+.+|.++.. + +-+..+|.|+....++-...-+..-.. +.-.+..|+.+........+...
T Consensus 3 ~matgsgkt~~ma~lil~~y~---k-gyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fseh 78 (812)
T COG3421 3 EMATGSGKTLVMAGLILECYK---K-GYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEH 78 (812)
T ss_pred ccccCCChhhHHHHHHHHHHH---h-chhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCcc
Confidence 589999999999888877654 2 344577777765554433222211000 11112233323222222223333
Q ss_pred hccCcEEEecHHHHHHhHhhcC---cc---cccee-EEEEecccccc
Q 000607 117 MSKHEVLVMTPQILLDGLRLSY---FK---LNMIK-VLILDECHHAR 156 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~---~~---l~~i~-llI~DEaH~~~ 156 (1396)
-+...|+++|.|.|...+.+.. +. +.+.. +.+-|||||+-
T Consensus 79 nd~iei~fttiq~l~~d~~~~ken~itledl~~~klvfl~deahhln 125 (812)
T COG3421 79 NDAIEIYFTTIQGLFSDFTRAKENAITLEDLKDQKLVFLADEAHHLN 125 (812)
T ss_pred CCceEEEEeehHHHHHHHHhhccccccHhhHhhCceEEEechhhhhh
Confidence 3467899999999998776542 22 33333 55679999986
No 235
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=96.60 E-value=0.0087 Score=67.44 Aligned_cols=121 Identities=22% Similarity=0.222 Sum_probs=73.9
Q ss_pred cccchH-HHHHHHHHHhcCC---EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCC
Q 000607 19 LPFARN-YQLEALENALKQN---TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 19 ~~~~r~-yQ~e~~~~~l~~n---~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~ 94 (1396)
.+.||. +|.-+++..+..+ +.+.+.-|||||+.|+.+.. .+-+....-+++++-=|++++ |-
T Consensus 225 Gi~prn~eQ~~ALdlLld~dI~lV~L~G~AGtGKTlLALaAgl--eqv~e~~~y~KiiVtRp~vpv------------G~ 290 (436)
T COG1875 225 GIRPRNAEQRVALDLLLDDDIDLVSLGGKAGTGKTLLALAAGL--EQVLERKRYRKIIVTRPTVPV------------GE 290 (436)
T ss_pred ccCcccHHHHHHHHHhcCCCCCeEEeeccCCccHhHHHHHHHH--HHHHHHhhhceEEEecCCcCc------------cc
Confidence 445665 7888888888864 66999999999999886322 222333445668888898877 33
Q ss_pred eEEEEeCCCC--cccCCccchHHhhccCcEEE----ecHHHHHHhHhhcCccccce----------eEEEEeccccccC
Q 000607 95 KVGKYWGDMG--VDFWDGATWKEEMSKHEVLV----MTPQILLDGLRLSYFKLNMI----------KVLILDECHHARG 157 (1396)
Q Consensus 95 ~v~~~~G~~~--~~~~~~~~~~~~~~~~~ViV----~T~q~L~~~l~~~~~~l~~i----------~llI~DEaH~~~~ 157 (1396)
.++.+-|... ...|-+... ++-.+++ |+.+.+...+.++.+.+..+ .+||+|||+++..
T Consensus 291 dIGfLPG~eEeKm~PWmq~i~----DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTp 365 (436)
T COG1875 291 DIGFLPGTEEEKMGPWMQAIF----DNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTP 365 (436)
T ss_pred ccCcCCCchhhhccchHHHHH----hHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCH
Confidence 4455555421 223332222 1222222 34566766666654433222 6899999999875
No 236
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=96.59 E-value=0.0038 Score=62.60 Aligned_cols=56 Identities=23% Similarity=0.114 Sum_probs=32.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
-++|.+++|+|||.++-.+++.+..... ......+.+-+|...-.......+....
T Consensus 6 ~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l 62 (131)
T PF13401_consen 6 ILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEAL 62 (131)
T ss_dssp -EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHH
T ss_pred ccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHh
Confidence 4889999999999998777776543211 1133445555555443344455554443
No 237
>PRK06526 transposase; Provisional
Probab=96.52 E-value=0.007 Score=67.84 Aligned_cols=33 Identities=27% Similarity=0.275 Sum_probs=25.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
|+++++|+|+|||..|..+..++.. .+.+++|.
T Consensus 100 nlll~Gp~GtGKThLa~al~~~a~~-----~g~~v~f~ 132 (254)
T PRK06526 100 NVVFLGPPGTGKTHLAIGLGIRACQ-----AGHRVLFA 132 (254)
T ss_pred eEEEEeCCCCchHHHHHHHHHHHHH-----CCCchhhh
Confidence 8999999999999999887766543 34556664
No 238
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=96.42 E-value=0.0099 Score=73.49 Aligned_cols=44 Identities=23% Similarity=0.204 Sum_probs=41.5
Q ss_pred CeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccC
Q 000607 448 LVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 448 ~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R 491 (1396)
..+.|++-+++-||.|=|++=.++-.....|..+=.|-+||.-|
T Consensus 483 plRFIFS~waLrEGWDNPNVFtIckL~~S~SeiSK~QeVGRGLR 526 (985)
T COG3587 483 PLRFIFSKWALREGWDNPNVFTICKLRSSGSEISKLQEVGRGLR 526 (985)
T ss_pred cceeeeehhHHhhcCCCCCeeEEEEecCCCcchHHHHHhcccee
Confidence 48899999999999999999999999999999999999999877
No 239
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=96.38 E-value=0.019 Score=71.45 Aligned_cols=42 Identities=26% Similarity=0.244 Sum_probs=33.3
Q ss_pred cccCCCcccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHH
Q 000607 13 EVSADTLPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIM 54 (1396)
Q Consensus 13 ~~~~~~~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iail 54 (1396)
+.+-...++|++-|...+.+++. .|+++-.|||+|||+.-+-
T Consensus 13 Gv~V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLLC 59 (945)
T KOG1132|consen 13 GVPVEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLLC 59 (945)
T ss_pred CceeeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHHH
Confidence 33444456699999999998886 3899999999999997544
No 240
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.36 E-value=0.037 Score=65.64 Aligned_cols=121 Identities=12% Similarity=0.076 Sum_probs=66.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.++.-+..++...... .++++.++. .+ +.-+..|...+.+..++.+.
T Consensus 176 vi~lvGptGvGKTTT~aKLA~~~~~~~~~-~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~----------------- 237 (388)
T PRK12723 176 VFILVGPTGVGKTTTIAKLAAIYGINSDD-KSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVK----------------- 237 (388)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhhcc-CCCeEEEEeccCccHHHHHHHHHHhhcCCcceE-----------------
Confidence 47799999999999987776654322111 234444443 33 33344444444444444332
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
++.++..+...+.. +.+.++||+|++.+...+...-.-+..+... .....-.+|.|+||-.
T Consensus 238 --------~~~~~~~l~~~L~~----~~~~DlVLIDTaGr~~~~~~~l~el~~~l~~----~~~~~e~~LVlsat~~ 298 (388)
T PRK12723 238 --------AIESFKDLKEEITQ----SKDFDLVLVDTIGKSPKDFMKLAEMKELLNA----CGRDAEFHLAVSSTTK 298 (388)
T ss_pred --------eeCcHHHHHHHHHH----hCCCCEEEEcCCCCCccCHHHHHHHHHHHHh----cCCCCeEEEEEcCCCC
Confidence 12234444444432 3578999999999886542121223444422 1122236789999874
No 241
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=96.36 E-value=0.0099 Score=74.71 Aligned_cols=65 Identities=20% Similarity=0.200 Sum_probs=47.1
Q ss_pred hHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 23 RNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
-++|++++..++.++ ++|.+++|+|||.+...++..+.+.. .....++.+++||---+....+.+
T Consensus 154 ~d~Qk~Av~~a~~~~~~vItGgpGTGKTt~v~~ll~~l~~~~-~~~~~~i~l~APTgkAA~rL~e~~ 219 (615)
T PRK10875 154 VDWQKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQLA-DGERCRIRLAAPTGKAAARLTESL 219 (615)
T ss_pred CHHHHHHHHHHhcCCeEEEEeCCCCCHHHHHHHHHHHHHHhc-CCCCcEEEEECCcHHHHHHHHHHH
Confidence 479999999999875 88999999999998776666554321 223457889999954444444443
No 242
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.34 E-value=0.43 Score=56.40 Aligned_cols=129 Identities=11% Similarity=0.180 Sum_probs=88.6
Q ss_pred cHHHHHHHHHHh-hhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcC
Q 000607 369 TEKIVCLIESLL-EYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRG 447 (1396)
Q Consensus 369 s~Kv~~L~~~L~-~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g 447 (1396)
..+.+-..+.+. ++.......|+|+.++-..--.+...+++. .+....++--+ ++.+-..+-+-|-.|
T Consensus 533 D~RFkyFv~~ImPq~~k~t~s~~LiyIPSYfDFVRvRNy~K~e-----~i~F~~i~EYs------sk~~vsRAR~lF~qg 601 (698)
T KOG2340|consen 533 DARFKYFVDKIMPQLIKRTESGILIYIPSYFDFVRVRNYMKKE-----EISFVMINEYS------SKSKVSRARELFFQG 601 (698)
T ss_pred hHHHHHHHHhhchhhcccccCceEEEecchhhHHHHHHHhhhh-----hcchHHHhhhh------hHhhhhHHHHHHHhc
Confidence 344444444332 343334567899999988877788888763 44444443332 445556677779999
Q ss_pred CeeEEEEeccc--ccccCCCcccEEEEeCCCCcHH---HHHHhhhcccCCC------CcEEEEEecCCcchH
Q 000607 448 LVNVIVATSIL--EEGLDVQSCNLVIMFDPSRTVC---SFIQSRGRARMQN------SDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 448 ~~nvLVaTsvl--eeGiDIp~~~lVI~fD~p~s~~---~yiQr~GRA~R~g------s~~i~lv~~~~~~~~ 508 (1396)
..++|+-|.-+ =+--+|..+.-||.|.+|.+|. .++-+.||+.-.| ..+.+|++.-|.-..
T Consensus 602 r~~vlLyTER~hffrR~~ikGVk~vVfYqpP~~P~FYsEiinm~~k~~~~gn~d~d~~t~~ilytKyD~i~L 673 (698)
T KOG2340|consen 602 RKSVLLYTERAHFFRRYHIKGVKNVVFYQPPNNPHFYSEIINMSDKTTSQGNTDLDIFTVRILYTKYDRIRL 673 (698)
T ss_pred CceEEEEehhhhhhhhheecceeeEEEecCCCCcHHHHHHHhhhhhhhccCCccccceEEEEEeechhhHHH
Confidence 99999999654 4678999999999999999975 4577888876555 478888886654433
No 243
>PRK10536 hypothetical protein; Provisional
Probab=96.31 E-value=0.0054 Score=67.44 Aligned_cols=55 Identities=16% Similarity=0.045 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...|..++..+.+. .+++.+++|+|||+.|+.+..+... ...-+++++.=|+++.
T Consensus 61 n~~Q~~~l~al~~~~lV~i~G~aGTGKT~La~a~a~~~l~---~~~~~kIiI~RP~v~~ 116 (262)
T PRK10536 61 NEAQAHYLKAIESKQLIFATGEAGCGKTWISAAKAAEALI---HKDVDRIIVTRPVLQA 116 (262)
T ss_pred CHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHHHHh---cCCeeEEEEeCCCCCc
Confidence 56888888877765 5889999999999999886653321 1234556666676543
No 244
>PRK08181 transposase; Validated
Probab=96.00 E-value=0.062 Score=60.64 Aligned_cols=57 Identities=21% Similarity=0.262 Sum_probs=36.3
Q ss_pred cchHHHHHHHHHH----hcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH
Q 000607 21 FARNYQLEALENA----LKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ 83 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~----l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q 83 (1396)
.+..-|..++..+ .++ |+++++|+|+|||..+..+..++.+ .+.+++|+. ...|+.+
T Consensus 87 ~~~~~~~~~L~~~~~~~~~~~nlll~Gp~GtGKTHLa~Aia~~a~~-----~g~~v~f~~-~~~L~~~ 148 (269)
T PRK08181 87 MVSKAQVMAIAAGDSWLAKGANLLLFGPPGGGKSHLAAAIGLALIE-----NGWRVLFTR-TTDLVQK 148 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCceEEEEecCCCcHHHHHHHHHHHHHH-----cCCceeeee-HHHHHHH
Confidence 3445566555433 233 8999999999999999887766543 345565553 3345443
No 245
>PRK04296 thymidine kinase; Provisional
Probab=95.94 E-value=0.015 Score=62.40 Aligned_cols=34 Identities=15% Similarity=0.231 Sum_probs=25.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
.++.+|+|+|||..++.++.++.. .+++++++-|
T Consensus 5 ~litG~~GsGKTT~~l~~~~~~~~-----~g~~v~i~k~ 38 (190)
T PRK04296 5 EFIYGAMNSGKSTELLQRAYNYEE-----RGMKVLVFKP 38 (190)
T ss_pred EEEECCCCCHHHHHHHHHHHHHHH-----cCCeEEEEec
Confidence 568999999999988776665532 3667888766
No 246
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=95.93 E-value=0.032 Score=72.19 Aligned_cols=59 Identities=19% Similarity=0.104 Sum_probs=43.7
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
...+.+-|.+++..+..+ -++|.++.|+|||.+.-.++..+.. ..+...+++++||-.-
T Consensus 321 ~~~l~~~Q~~Ai~~~~~~~~~iitGgpGTGKTt~l~~i~~~~~~---~~~~~~v~l~ApTg~A 380 (720)
T TIGR01448 321 RKGLSEEQKQALDTAIQHKVVILTGGPGTGKTTITRAIIELAEE---LGGLLPVGLAAPTGRA 380 (720)
T ss_pred CCCCCHHHHHHHHHHHhCCeEEEECCCCCCHHHHHHHHHHHHHH---cCCCceEEEEeCchHH
Confidence 355889999999999876 4889999999999987655554322 1122678889999443
No 247
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=95.83 E-value=0.084 Score=68.68 Aligned_cols=101 Identities=16% Similarity=0.109 Sum_probs=64.7
Q ss_pred ccchHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
..+.+-|.+++..+... -++|.++.|+|||.+.-.++..+ . . .+.++++++|| ...+..++.-++....
T Consensus 351 ~~Ls~~Q~~Av~~i~~s~~~~il~G~aGTGKTtll~~i~~~~-~---~-~g~~V~~~ApT----g~Aa~~L~~~~g~~a~ 421 (744)
T TIGR02768 351 YRLSEEQYEAVRHVTGSGDIAVVVGRAGTGKSTMLKAAREAW-E---A-AGYRVIGAALS----GKAAEGLQAESGIESR 421 (744)
T ss_pred CCCCHHHHHHHHHHhcCCCEEEEEecCCCCHHHHHHHHHHHH-H---h-CCCeEEEEeCc----HHHHHHHHhccCCcee
Confidence 44789999999999874 37899999999998865544332 2 1 36779999999 3334445443333211
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
|-..++....++.-.+...++||+|||-.+..
T Consensus 422 ----------------------------Ti~~~~~~~~~~~~~~~~~~llIvDEasMv~~ 453 (744)
T TIGR02768 422 ----------------------------TLASLEYAWANGRDLLSDKDVLVIDEAGMVGS 453 (744)
T ss_pred ----------------------------eHHHHHhhhccCcccCCCCcEEEEECcccCCH
Confidence 11112111122223356789999999998864
No 248
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=95.55 E-value=0.086 Score=56.73 Aligned_cols=122 Identities=12% Similarity=0.057 Sum_probs=67.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++|||+|||.++.-+..++.. . ++++.+++ . .|.=+..|-+.+.+..++.+....-. .+ +
T Consensus 4 i~lvGptGvGKTTt~aKLAa~~~~---~--~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~--~~------~-- 68 (196)
T PF00448_consen 4 IALVGPTGVGKTTTIAKLAARLKL---K--GKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTE--SD------P-- 68 (196)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---T--T--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTT--SC------H--
T ss_pred EEEECCCCCchHhHHHHHHHHHhh---c--cccceeecCCCCCccHHHHHHHHHHHhccccchhhcc--hh------h--
Confidence 569999999999998877765532 2 44444444 3 33444556666666666555432211 00 0
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+.+.+.+. ...-++.++|++|-+-+...+.....-|+.+.... .+....|-|+||-..
T Consensus 69 -----------~~~~~~~l~--~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~-----~~~~~~LVlsa~~~~ 127 (196)
T PF00448_consen 69 -----------AEIAREALE--KFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEAL-----NPDEVHLVLSATMGQ 127 (196)
T ss_dssp -----------HHHHHHHHH--HHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHH-----SSSEEEEEEEGGGGG
T ss_pred -----------HHHHHHHHH--HHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhc-----CCccceEEEecccCh
Confidence 112223333 12235689999999887765444444455555432 233457788888643
No 249
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=95.51 E-value=0.02 Score=66.99 Aligned_cols=122 Identities=16% Similarity=0.054 Sum_probs=73.8
Q ss_pred hHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCC
Q 000607 23 RNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGD 102 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~ 102 (1396)
.+=|.+++.. .+++++|.|..|||||.+.+..+.+++.... -+..++++++.|+..+....+.+...++....
T Consensus 2 ~~eQ~~~i~~-~~~~~lV~a~AGSGKT~~l~~ri~~ll~~~~-~~~~~Il~lTft~~aa~e~~~ri~~~l~~~~~----- 74 (315)
T PF00580_consen 2 TDEQRRIIRS-TEGPLLVNAGAGSGKTTTLLERIAYLLYEGG-VPPERILVLTFTNAAAQEMRERIRELLEEEQQ----- 74 (315)
T ss_dssp -HHHHHHHHS--SSEEEEEE-TTSSHHHHHHHHHHHHHHTSS-STGGGEEEEESSHHHHHHHHHHHHHHHHHCCH-----
T ss_pred CHHHHHHHhC-CCCCEEEEeCCCCCchHHHHHHHHHhhcccc-CChHHheecccCHHHHHHHHHHHHHhcCcccc-----
Confidence 4568889888 8889999999999999998877666544222 35567999999999998888888874321100
Q ss_pred CCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCcccc--ceeEEEEeccc
Q 000607 103 MGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLN--MIKVLILDECH 153 (1396)
Q Consensus 103 ~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~--~i~llI~DEaH 153 (1396)
.... +............+.|+|...+...+-+.+.... .-++-|+|+..
T Consensus 75 ~~~~--~~~~~~~~~~~~~~~i~T~hsf~~~ll~~~~~~~~~~~~~~i~~~~~ 125 (315)
T PF00580_consen 75 ESSD--NERLRRQLSNIDRIYISTFHSFCYRLLREYGYEIGIDPNFEILDEEE 125 (315)
T ss_dssp CCTT---HHHHHHHHHCTTSEEEEHHHHHHHHHHHHHGGTTSHTTTEEECHHH
T ss_pred cccc--cccccccccccchheeehhhhhhhhhhhhhhhhhhccccceeecchh
Confidence 0000 0011111222467889998877654332221111 22456666665
No 250
>PF14709 DND1_DSRM: double strand RNA binding domain from DEAD END PROTEIN 1
Probab=95.45 E-value=0.059 Score=48.49 Aligned_cols=63 Identities=19% Similarity=0.230 Sum_probs=48.6
Q ss_pred chHHHHHHhhccCCCCCCCCCccEEEEe---C----CeEEEEEEcCCCCCC-cc----c---cccCCHHHHHHHHHHHHH
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHIN---K----EMGICTLYLPNNCPI-QT----V---IAQGNIKTLKQAACLEAC 623 (1396)
Q Consensus 559 ~ai~~l~~yc~~lp~d~~~~~~p~~~i~---~----~~~~~~v~LP~~~p~-~~----~---~~~~~~~~Ak~~aAf~a~ 623 (1396)
+|++.|+.+|++--= ..|.|.+. + -.|.|.|.+|...-. .. + .++.+++.||.+||-.|-
T Consensus 2 ~a~~~L~elC~k~~W-----~~P~y~l~~~~Gp~~~~~F~ykV~i~~~~~~~~~~~~~~~p~~~~~~~k~Ak~~AA~~~L 76 (80)
T PF14709_consen 2 SAVSLLNELCQKNKW-----GPPVYELVSESGPDHRKLFLYKVVIPGLEYPFEGSIECFGPTKPSSTKKEAKESAAQQAL 76 (80)
T ss_pred CHHHHHHHHHHhcCC-----CCCeEEEEeccCCCccEEEEEEEEEcCCCCCCcceEEEccCCCcCccHHHHHHHHHHHHH
Confidence 689999999988521 46888881 1 279999999987652 22 1 688999999999998887
Q ss_pred HHH
Q 000607 624 KKL 626 (1396)
Q Consensus 624 ~~L 626 (1396)
..|
T Consensus 77 ~~L 79 (80)
T PF14709_consen 77 QAL 79 (80)
T ss_pred Hhc
Confidence 655
No 251
>PRK08084 DNA replication initiation factor; Provisional
Probab=95.41 E-value=0.1 Score=58.04 Aligned_cols=45 Identities=18% Similarity=0.238 Sum_probs=28.4
Q ss_pred HHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 26 QLEALENALK----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 26 Q~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
...++..+.. .++++++|+|+|||..+..+..++.. .+.++.|+.
T Consensus 32 a~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~-----~~~~v~y~~ 80 (235)
T PRK08084 32 LLAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQ-----RGRAVGYVP 80 (235)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHh-----CCCeEEEEE
Confidence 4445544433 25899999999999988765554422 244556553
No 252
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=95.38 E-value=0.054 Score=68.18 Aligned_cols=125 Identities=17% Similarity=0.071 Sum_probs=84.7
Q ss_pred cchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEE
Q 000607 21 FARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
.+..-|++|+.+++.- | .+|.+=+|+|||.+...+|+.+.. .+|++|..+=|..-|+..--.++.+ + ...
T Consensus 669 ~LN~dQr~A~~k~L~aedy~LI~GMPGTGKTTtI~~LIkiL~~-----~gkkVLLtsyThsAVDNILiKL~~~-~--i~~ 740 (1100)
T KOG1805|consen 669 RLNNDQRQALLKALAAEDYALILGMPGTGKTTTISLLIKILVA-----LGKKVLLTSYTHSAVDNILIKLKGF-G--IYI 740 (1100)
T ss_pred hcCHHHHHHHHHHHhccchheeecCCCCCchhhHHHHHHHHHH-----cCCeEEEEehhhHHHHHHHHHHhcc-C--cce
Confidence 4788999999999985 5 778888999999998889988754 5788999998876667666666543 1 111
Q ss_pred E-eCCCC--------------cccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 99 Y-WGDMG--------------VDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 99 ~-~G~~~--------------~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
. -|... ....+-+.....++...||.+|.=-+- +..+...++++.|+|||-.+.-
T Consensus 741 lRLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~----~plf~~R~FD~cIiDEASQI~l 810 (1100)
T KOG1805|consen 741 LRLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN----HPLFVNRQFDYCIIDEASQILL 810 (1100)
T ss_pred eecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC----chhhhccccCEEEEcccccccc
Confidence 1 11110 001112234466678889999863322 3334456799999999987653
No 253
>PRK12377 putative replication protein; Provisional
Probab=95.31 E-value=0.13 Score=57.23 Aligned_cols=42 Identities=12% Similarity=0.090 Sum_probs=29.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
++++.+++|+|||..|..+...+.. .+..++|+ +...|..+.
T Consensus 103 ~l~l~G~~GtGKThLa~AIa~~l~~-----~g~~v~~i-~~~~l~~~l 144 (248)
T PRK12377 103 NFVFSGKPGTGKNHLAAAIGNRLLA-----KGRSVIVV-TVPDVMSRL 144 (248)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHH-----cCCCeEEE-EHHHHHHHH
Confidence 6999999999999999888776643 34445443 433555543
No 254
>PRK07952 DNA replication protein DnaC; Validated
Probab=95.26 E-value=0.18 Score=56.12 Aligned_cols=46 Identities=20% Similarity=0.216 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 24 NYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 24 ~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
+-|..++..+.+ +++++.+++|+|||..+..++.++.. .++.++|+
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~-----~g~~v~~i 133 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLL-----RGKSVLII 133 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEE
Confidence 446556655553 25899999999999999888776643 34556665
No 255
>COG1939 Ribonuclease III family protein [Replication, recombination, and repair]
Probab=95.24 E-value=0.033 Score=53.01 Aligned_cols=113 Identities=19% Similarity=0.154 Sum_probs=69.6
Q ss_pred CchhhhhhhhhHHHHHHHHHHHHhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCc
Q 000607 995 HLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYE 1074 (1396)
Q Consensus 995 ~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~ 1074 (1396)
|-=-|+|+||||+.+.+=.|+.... ....+.||..-.+.||-+.=+.+-.. +..++.. .+ ..|.-.|.+.+...
T Consensus 14 n~laLAy~GDAV~e~yVR~~~l~~g-~~k~~~lH~~a~~~VsAk~QA~il~~--~~~~Lte-~E--~~I~KRgRNaks~T 87 (132)
T COG1939 14 NGLALAYLGDAVYELYVREYLLLKG-KTKPNDLHKRATAYVSAKAQALILKA--LLEFLTE-EE--EEIVKRGRNAKSGT 87 (132)
T ss_pred CHHHHHHhhhHHHHHHHHHHHHhcc-cCChHHHHHHHHHHhhHHHHHHHHHH--HHHHhhH-HH--HHHHHHhcccccCC
Confidence 5557999999999999988777653 33688999999999987765555332 1112220 00 12333343221110
Q ss_pred cCcccccCCcccccccceecccchhhHHHHHHHHHHhhcCChhHHHHHHhhc
Q 000607 1075 LNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGENVGLIFLDRI 1126 (1396)
Q Consensus 1075 ~~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~~~a~~~~~~l 1126 (1396)
. +...-+..=..|..+|||||..|+.+-.+.-..++.|.
T Consensus 88 ~-------------~kn~dv~tYr~sTgfEAliGyLyL~~~~eRL~ell~~~ 126 (132)
T COG1939 88 K-------------PKNTDVETYRMSTGFEALIGYLYLTKQEERLEELLNKV 126 (132)
T ss_pred C-------------CCCCChHHHHHhhhHHHHHHHHHHcccHHHHHHHHHHH
Confidence 0 00001222345788999999999999887777776664
No 256
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=95.06 E-value=0.074 Score=59.75 Aligned_cols=48 Identities=19% Similarity=0.262 Sum_probs=35.3
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.|+++.+++|+|||+.|+++...+.. .+.+++ .+++..|+.+....+.
T Consensus 106 ~nl~l~G~~G~GKThLa~Ai~~~l~~-----~g~sv~-f~~~~el~~~Lk~~~~ 153 (254)
T COG1484 106 ENLVLLGPPGVGKTHLAIAIGNELLK-----AGISVL-FITAPDLLSKLKAAFD 153 (254)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEE-EEEHHHHHHHHHHHHh
Confidence 38999999999999999988877652 244444 4566678777666555
No 257
>KOG2777 consensus tRNA-specific adenosine deaminase 1 [RNA processing and modification]
Probab=95.05 E-value=0.041 Score=65.99 Aligned_cols=68 Identities=25% Similarity=0.160 Sum_probs=51.0
Q ss_pred cCCchhHHHHHHHhcCCCCCcceeeccCCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhhhhC
Q 000607 1322 RFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1322 ~~~p~~~L~~~~~~~~~~~~~~~~~~~~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1393 (1396)
..+|+..|+|+.+ +..+.........+...|.|.|.|+|+.+- |.|.|||+||..||..||+.|-...
T Consensus 89 ~~npv~ll~e~~~--~~~~~~~~~~~~~~~~~F~~~~~vdg~~~~--~~~~sKk~ak~~aa~~al~~l~~~~ 156 (542)
T KOG2777|consen 89 GKNPVSLLHELAN--GLFFDFVNESGPQHAPKFVMSVVVDGRWFE--GGGRSKKEAKQEAAMAALQVLFKID 156 (542)
T ss_pred cCCchHHHHHHhc--ccceeeeccCCCCCCceEEEEEEECCEEcc--CCCcchHHHHHHHHHHHHHHHHhcc
Confidence 6899999999988 322222222222334569999999999864 4499999999999999999987543
No 258
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=95.02 E-value=0.22 Score=63.15 Aligned_cols=41 Identities=17% Similarity=0.253 Sum_probs=31.0
Q ss_pred chHHHHHHHHHHhc----C----CEE-EEeCCCchHHHHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK----Q----NTI-VFLETGSGKTLIAIMLLRSYAYL 62 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~----~----n~I-v~~~TGsGKT~iailli~~l~~~ 62 (1396)
-|+-|.+.+..++. + ++| |+++||+|||.++-.+++.+.+.
T Consensus 759 hREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrELqee 808 (1164)
T PTZ00112 759 CREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLLQHK 808 (1164)
T ss_pred ChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 48888877765553 2 454 99999999999998888776543
No 259
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=94.99 E-value=0.027 Score=56.68 Aligned_cols=39 Identities=21% Similarity=0.227 Sum_probs=26.3
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVV 79 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~ 79 (1396)
+++++.+|+|+|||.++..++..+ .. ..+.++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~----~~-~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALAREL----GP-PGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhcc----CC-CCCCEEEECCEEc
Confidence 358899999999999987666544 11 1124666666643
No 260
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=94.92 E-value=0.2 Score=66.22 Aligned_cols=101 Identities=18% Similarity=0.085 Sum_probs=63.1
Q ss_pred ccchHHHHHHHHHHhcC-C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQ-N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+.+.+=|.+++..++.+ + ++|.++.|+|||.+. ..+..+.+ ..+.+++.++||- ..+..+..-+|+..
T Consensus 345 ~~Ls~eQr~Av~~il~s~~v~vv~G~AGTGKTT~l-~~~~~~~e----~~G~~V~~~ApTG----kAA~~L~e~tGi~a- 414 (988)
T PRK13889 345 LVLSGEQADALAHVTDGRDLGVVVGYAGTGKSAML-GVAREAWE----AAGYEVRGAALSG----IAAENLEGGSGIAS- 414 (988)
T ss_pred CCCCHHHHHHHHHHhcCCCeEEEEeCCCCCHHHHH-HHHHHHHH----HcCCeEEEecCcH----HHHHHHhhccCcch-
Confidence 45788999999999985 3 789999999999873 33333322 1366799999993 33444443222211
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.|-..|+.....+...+..-++||+|||-.+..
T Consensus 415 ---------------------------~TI~sll~~~~~~~~~l~~~~vlIVDEASMv~~ 447 (988)
T PRK13889 415 ---------------------------RTIASLEHGWGQGRDLLTSRDVLVIDEAGMVGT 447 (988)
T ss_pred ---------------------------hhHHHHHhhhcccccccccCcEEEEECcccCCH
Confidence 122222211112233355678999999998764
No 261
>PRK08727 hypothetical protein; Validated
Probab=94.88 E-value=0.15 Score=56.67 Aligned_cols=33 Identities=21% Similarity=0.218 Sum_probs=23.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
+++++++|+|||..+..+.....+ .+.+++++.
T Consensus 44 l~l~G~~G~GKThL~~a~~~~~~~-----~~~~~~y~~ 76 (233)
T PRK08727 44 LYLSGPAGTGKTHLALALCAAAEQ-----AGRSSAYLP 76 (233)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEEe
Confidence 889999999999988766554422 244566653
No 262
>PRK06835 DNA replication protein DnaC; Validated
Probab=94.88 E-value=0.14 Score=59.52 Aligned_cols=58 Identities=17% Similarity=0.220 Sum_probs=42.3
Q ss_pred cchHHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHH
Q 000607 21 FARNYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQ 84 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~ 84 (1396)
.||..+..+++.+.+ .+++++++||+|||+.+..++.++.. .+..|+|+. ...|..+.
T Consensus 160 ~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~-----~g~~V~y~t-~~~l~~~l 226 (329)
T PRK06835 160 SPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLD-----RGKSVIYRT-ADELIEIL 226 (329)
T ss_pred CHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHH-----CCCeEEEEE-HHHHHHHH
Confidence 688888888886552 47999999999999999888777643 345566654 34565544
No 263
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=94.87 E-value=0.11 Score=52.74 Aligned_cols=23 Identities=26% Similarity=0.446 Sum_probs=18.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+++.+|+|+|||.++-.++..+
T Consensus 21 ~v~i~G~~G~GKT~l~~~i~~~~ 43 (151)
T cd00009 21 NLLLYGPPGTGKTTLARAIANEL 43 (151)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999998876666544
No 264
>PF13871 Helicase_C_4: Helicase_C-like
Probab=94.85 E-value=0.061 Score=60.18 Aligned_cols=63 Identities=19% Similarity=0.300 Sum_probs=53.4
Q ss_pred HHHHHHhcCCeeEEEEecccccccCCCc--------ccEEEEeCCCCcHHHHHHhhhcccCCCC----cEEEEEe
Q 000607 439 EIVEEFRRGLVNVIVATSILEEGLDVQS--------CNLVIMFDPSRTVCSFIQSRGRARMQNS----DYLLMVK 501 (1396)
Q Consensus 439 ~~l~~Fr~g~~nvLVaTsvleeGiDIp~--------~~lVI~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~ 501 (1396)
...+.|.+|+..|+|-|..++.||.+.+ -.+-|...+||+....+|..||+.|.|+ .|.++++
T Consensus 52 ~e~~~F~~g~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pwsad~aiQ~~GR~hRsnQ~~~P~y~~l~t 126 (278)
T PF13871_consen 52 AEKQAFMDGEKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPWSADKAIQQFGRTHRSNQVSAPEYRFLVT 126 (278)
T ss_pred HHHHHHhCCCceEEEEecccccccchhccccCCCCCceEEEEeeCCCCHHHHHHHhccccccccccCCEEEEeec
Confidence 5667899999999999999999999875 2356788999999999999999999985 3665554
No 265
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=94.83 E-value=0.2 Score=65.37 Aligned_cols=70 Identities=17% Similarity=0.246 Sum_probs=53.1
Q ss_pred cccchHHHHHHHHHHhc-----CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 19 LPFARNYQLEALENALK-----QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~-----~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
...+||.|.+..+.+.+ +++++-+|||+|||+..+....... ...+...+++|++.|..=..|..+++++
T Consensus 8 y~~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~--~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 8 YEKIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQ--QEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHH--HhccccccEEEEcccchHHHHHHHHHHh
Confidence 33359999999988775 3799999999999998776433222 1123346799999998888888888887
No 266
>PRK06893 DNA replication initiation factor; Validated
Probab=94.78 E-value=0.096 Score=58.12 Aligned_cols=23 Identities=17% Similarity=0.232 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
+++++|+|+|||..+..+..++.
T Consensus 42 l~l~G~~G~GKThL~~ai~~~~~ 64 (229)
T PRK06893 42 FYIWGGKSSGKSHLLKAVSNHYL 64 (229)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH
Confidence 68999999999999877766553
No 267
>cd00048 DSRM Double-stranded RNA binding motif. Binding is not sequence specific but is highly specific for double stranded RNA. Found in a variety of proteins including dsRNA dependent protein kinase PKR, RNA helicases, Drosophila staufen protein, E. coli RNase III, RNases H1, and dsRNA dependent adenosine deaminases.
Probab=94.74 E-value=0.089 Score=45.57 Aligned_cols=61 Identities=21% Similarity=0.175 Sum_probs=43.2
Q ss_pred chHHHHHHhhccCCCCCCCCCccEEEE---eC----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 559 SSVSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 559 ~ai~~l~~yc~~lp~d~~~~~~p~~~i---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
+.++.|+.||++. ....|.|.+ .+ ..|+|+|.+... ....-...||+.||+.||..|+..|
T Consensus 1 ~p~~~L~e~~~~~-----~~~~~~y~~~~~~g~~~~~~f~~~v~i~~~--~~~~g~g~sKk~Ak~~AA~~al~~L 68 (68)
T cd00048 1 NPKSLLQELAQKR-----GKPLPEYELVEEEGPDHAPRFTVEVTVGGK--ITGEGEGSSKKEAKQNAAEAALRKL 68 (68)
T ss_pred ChHHHHHHHHHHc-----CCCCCeEEEeeeeCCCCCCeEEEEEEECCE--EEEEeecCCHHHHHHHHHHHHHHhC
Confidence 3578999999875 124567766 22 479999999651 1111334599999999999999875
No 268
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=94.59 E-value=0.09 Score=53.22 Aligned_cols=44 Identities=20% Similarity=0.354 Sum_probs=34.1
Q ss_pred CHHHHHHHHHHHhcCC-eeEEEEecccccccCCCc--ccEEEEeCCC
Q 000607 433 SRKKQNEIVEEFRRGL-VNVIVATSILEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 433 s~~~r~~~l~~Fr~g~-~nvLVaTsvleeGiDIp~--~~lVI~fD~p 476 (1396)
+..+..+++++|++.. ..||++|.-..||||+|+ |..||...+|
T Consensus 32 ~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~glP 78 (141)
T smart00492 32 DGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIIDGLP 78 (141)
T ss_pred ChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEEecC
Confidence 3345688999998754 379999977999999998 6778765554
No 269
>PRK14974 cell division protein FtsY; Provisional
Probab=94.52 E-value=0.53 Score=54.93 Aligned_cols=120 Identities=18% Similarity=0.121 Sum_probs=62.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC--cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK--VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt--~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
+++++++|+|||.++..++..+.. .+.+++++. .+ ..-+.|+.. .....++.+.. +..+.+.
T Consensus 143 i~~~G~~GvGKTTtiakLA~~l~~-----~g~~V~li~~Dt~R~~a~eqL~~-~a~~lgv~v~~--~~~g~dp------- 207 (336)
T PRK14974 143 IVFVGVNGTGKTTTIAKLAYYLKK-----NGFSVVIAAGDTFRAGAIEQLEE-HAERLGVKVIK--HKYGADP------- 207 (336)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----cCCeEEEecCCcCcHHHHHHHHH-HHHHcCCceec--ccCCCCH-------
Confidence 669999999999987766655422 344555554 32 233345433 34445554432 1111110
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
..++.+.+... ...+.++||+|.+++...+...-.-|+.+... ..+.-.+|.++|+..
T Consensus 208 ------------~~v~~~ai~~~--~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~-----~~pd~~iLVl~a~~g 265 (336)
T PRK14974 208 ------------AAVAYDAIEHA--KARGIDVVLIDTAGRMHTDANLMDELKKIVRV-----TKPDLVIFVGDALAG 265 (336)
T ss_pred ------------HHHHHHHHHHH--HhCCCCEEEEECCCccCCcHHHHHHHHHHHHh-----hCCceEEEeeccccc
Confidence 11122333321 12457899999999987553333333444321 122345777888764
No 270
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=94.43 E-value=0.43 Score=56.24 Aligned_cols=119 Identities=13% Similarity=0.071 Sum_probs=63.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.++..++..+.. ..+.+++.++. .+ +.=+.+|...+.+..++.+..+
T Consensus 139 ii~lvGptGvGKTTtiakLA~~~~~---~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~~~~~--------------- 200 (374)
T PRK14722 139 VFALMGPTGVGKTTTTAKLAARCVM---RFGASKVALLTTDSYRIGGHEQLRIFGKILGVPVHAV--------------- 200 (374)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---hcCCCeEEEEecccccccHHHHHHHHHHHcCCceEec---------------
Confidence 4789999999999998877765432 11223444444 22 1223444555555545444322
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+++.+...+. .+.+.++|++|++=....+......+..+. ......-.+|.|+||-..
T Consensus 201 ----------~~~~~l~~~l~----~l~~~DlVLIDTaG~~~~d~~l~e~La~L~-----~~~~~~~~lLVLsAts~~ 259 (374)
T PRK14722 201 ----------KDGGDLQLALA----ELRNKHMVLIDTIGMSQRDRTVSDQIAMLH-----GADTPVQRLLLLNATSHG 259 (374)
T ss_pred ----------CCcccHHHHHH----HhcCCCEEEEcCCCCCcccHHHHHHHHHHh-----ccCCCCeEEEEecCccCh
Confidence 22222222222 235679999999965543333333333322 111223468888998744
No 271
>PF00035 dsrm: Double-stranded RNA binding motif; InterPro: IPR001159 The DsRBD domain is found in a variety of RNA-binding proteins with different structures and exhibiting a diversity of functions []. It is involved in localisation of at least five different mRNAs in the early Drosophila embryo and by interferon-induced protein kinase in humans, which is part of the cellular response to dsRNA.; GO: 0003725 double-stranded RNA binding, 0005622 intracellular; PDB: 1EKZ_A 1STU_A 1QU6_A 2L2M_A 3ADJ_A 1WHN_A 3LLH_B 2B7V_A 2L3J_A 1UHZ_A ....
Probab=94.16 E-value=0.16 Score=43.97 Aligned_cols=59 Identities=25% Similarity=0.283 Sum_probs=41.3
Q ss_pred hHHHHHHhhccCCCCCCCCCccEEEE---eC-----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 560 SVSLIYFYCSRLPSDGYFKPTPKFHI---NK-----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 560 ai~~l~~yc~~lp~d~~~~~~p~~~i---~~-----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
+++.|+.||++.- ..|.|.. .+ ..|.|+|.+.... +. .-...|||.||+.||..|++.|
T Consensus 1 ~~~~L~e~~~~~~------~~~~~~~~~~~~~~~~~~~f~~~~~i~~~~-~~-~g~g~sKk~Ak~~AA~~al~~L 67 (67)
T PF00035_consen 1 PKSRLNEYCQKNK------FPPPYYYIEEEGPSHHRPRFICTVYIDGKE-YG-EGEGSSKKEAKQQAAKKALQKL 67 (67)
T ss_dssp HHHHHHHHHHHCT------SSEEEEEEEEESSSSSSEEEEEEEEETTEE-EE-EEEESSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcC------CCCCEEEEEEeCCCCCCceEEEEEEECCEE-Ee-EeccCCHHHHHHHHHHHHHHhC
Confidence 3688999999974 3444443 11 2799999994321 10 1334599999999999999987
No 272
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=94.14 E-value=0.3 Score=55.69 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=25.1
Q ss_pred cchHHHHHHHHHHh---c-C--CEEEEeCCCchHHHHHHHHHH
Q 000607 21 FARNYQLEALENAL---K-Q--NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l---~-~--n~Iv~~~TGsGKT~iailli~ 57 (1396)
.+.+-+.+++.... + + .+++.+++|+|||..+-.+..
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~ 65 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLK 65 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHH
Confidence 45555566665543 2 2 488999999999988655443
No 273
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=94.12 E-value=0.47 Score=56.89 Aligned_cols=41 Identities=29% Similarity=0.524 Sum_probs=31.8
Q ss_pred cchHHHHHHHHHHhc--------CCEEEEeCCCchHHHHHHHHHHHHHH
Q 000607 21 FARNYQLEALENALK--------QNTIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~--------~n~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
.-|+-|.+.+...++ ++++|++|+|+|||.++-.++..+.+
T Consensus 18 ~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 18 VHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 359999887776653 36999999999999988777766543
No 274
>KOG4334 consensus Uncharacterized conserved protein, contains double-stranded RNA-binding motif and WW domain [General function prediction only]
Probab=94.08 E-value=0.034 Score=63.91 Aligned_cols=64 Identities=27% Similarity=0.191 Sum_probs=50.2
Q ss_pred hhHHHHHHHhcCCCCCcceeecc-CCceEEEEEEEECCEEEEEEEeecCHHHHHHHHHHHHHHHhh
Q 000607 1326 VRELTEYCQKNHFSMKKPVASRI-SGKAAVTVEVQANGRLFEHTFLDADKKTAKKVACKEVLKSLR 1390 (1396)
Q Consensus 1326 ~~~L~~~~~~~~~~~~~~~~~~~-~g~~~~~~~v~v~~~~~~~~g~g~skk~Ak~~AA~~AL~~L~ 1390 (1396)
+-.|+|++|..-...+.|+.... +....|..+|.+++..+| .|.|.|||.||-.||+.+|++|-
T Consensus 378 vCiLhEy~q~~lk~~pvyef~e~~n~stpysa~v~~d~~~yG-sG~g~sKK~Ak~~AAR~tLeiLI 442 (650)
T KOG4334|consen 378 VCILHEYAQQCLKSLPVYEFAENDNNSTPYSAGVLPDLFPYG-SGVGASKKTAKLVAARDTLEILI 442 (650)
T ss_pred eehHHHHHHHHhhhcceeehhhccCCCCcccccccccccccc-cccccchHHHHHHHHHHHHHHhc
Confidence 45789998875545555543322 233459999999999998 89999999999999999999874
No 275
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=94.02 E-value=0.43 Score=57.84 Aligned_cols=120 Identities=15% Similarity=0.140 Sum_probs=64.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+++++|||+|||.+++.++..+.. . ..++++.++. .+ +.-+..|...+....++.+
T Consensus 223 ~i~~vGptGvGKTTt~~kLA~~~~~--~-~~g~~V~li~~D~~r~~a~eqL~~~a~~~~vp~------------------ 281 (424)
T PRK05703 223 VVALVGPTGVGKTTTLAKLAARYAL--L-YGKKKVALITLDTYRIGAVEQLKTYAKIMGIPV------------------ 281 (424)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH--h-cCCCeEEEEECCccHHHHHHHHHHHHHHhCCce------------------
Confidence 4779999999999998877665531 1 1234455444 22 1111112222222223222
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
..+.++..+...+.. +.+.++||+|.+-+...+.....-+..+... ........|.|+||...
T Consensus 282 -------~~~~~~~~l~~~l~~----~~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~----~~~~~~~~LVl~a~~~~ 344 (424)
T PRK05703 282 -------EVVYDPKELAKALEQ----LRDCDVILIDTAGRSQRDKRLIEELKALIEF----SGEPIDVYLVLSATTKY 344 (424)
T ss_pred -------EccCCHHhHHHHHHH----hCCCCEEEEeCCCCCCCCHHHHHHHHHHHhc----cCCCCeEEEEEECCCCH
Confidence 122344444444442 3468999999997765554444445555531 11234567889998743
No 276
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=93.69 E-value=0.33 Score=55.15 Aligned_cols=24 Identities=29% Similarity=0.384 Sum_probs=20.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
++++.+|+|+|||.+|-.+.+.+.
T Consensus 44 ~vll~GppGtGKTtlA~~ia~~l~ 67 (261)
T TIGR02881 44 HMIFKGNPGTGKTTVARILGKLFK 67 (261)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHH
Confidence 689999999999999987766553
No 277
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=93.64 E-value=0.68 Score=61.78 Aligned_cols=101 Identities=17% Similarity=0.148 Sum_probs=65.2
Q ss_pred ccchHHHHHHHHHHhcCC--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEE
Q 000607 20 PFARNYQLEALENALKQN--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
..+.+=|.++++.+...+ ++|.++-|+|||.+.-.+...+ + ..+.+++-++|| ...+..+++.+|+...
T Consensus 380 ~~Ls~eQ~~Av~~i~~~~r~~~v~G~AGTGKTt~l~~~~~~~-e----~~G~~V~g~ApT----gkAA~~L~e~~Gi~a~ 450 (1102)
T PRK13826 380 ARLSDEQKTAIEHVAGPARIAAVVGRAGAGKTTMMKAAREAW-E----AAGYRVVGGALA----GKAAEGLEKEAGIQSR 450 (1102)
T ss_pred CCCCHHHHHHHHHHhccCCeEEEEeCCCCCHHHHHHHHHHHH-H----HcCCeEEEEcCc----HHHHHHHHHhhCCCee
Confidence 457889999999886543 7899999999998754433322 2 246779999999 4556666665555433
Q ss_pred EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 98 KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 98 ~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+ | +-....+...+..-++||+|||..+..
T Consensus 451 TIas-----------~-----------------ll~~~~~~~~l~~~~vlVIDEAsMv~~ 482 (1102)
T PRK13826 451 TLSS-----------W-----------------ELRWNQGRDQLDNKTVFVLDEAGMVAS 482 (1102)
T ss_pred eHHH-----------H-----------------HhhhccCccCCCCCcEEEEECcccCCH
Confidence 2221 1 100111122345678999999998764
No 278
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=93.62 E-value=0.15 Score=50.75 Aligned_cols=21 Identities=29% Similarity=0.362 Sum_probs=17.3
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~ 58 (1396)
+++.+|.|+|||..+-.+++.
T Consensus 1 ill~G~~G~GKT~l~~~la~~ 21 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQY 21 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred CEEECcCCCCeeHHHHHHHhh
Confidence 589999999999987666554
No 279
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=93.55 E-value=0.71 Score=54.21 Aligned_cols=90 Identities=16% Similarity=0.140 Sum_probs=51.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-c-ccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-V-VLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~-~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+.+++|||+|||..+..+...+.. .++++.++. .+ + +-+.|+..... ..+
T Consensus 243 vI~LVGptGvGKTTTiaKLA~~L~~-----~GkkVglI~aDt~RiaAvEQLk~yae-~lg-------------------- 296 (436)
T PRK11889 243 TIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVK-TIG-------------------- 296 (436)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCcEEEEecCCcchHHHHHHHHHhh-hcC--------------------
Confidence 4679999999999988877665432 234444443 33 2 23444443222 122
Q ss_pred HHhhccCcEE-EecHHHHHHhHhhcCccccceeEEEEeccccccCCC
Q 000607 114 KEEMSKHEVL-VMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKH 159 (1396)
Q Consensus 114 ~~~~~~~~Vi-V~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~ 159 (1396)
..++ +.++..+.+.+.... .-.+.++||+|-+=+...+.
T Consensus 297 ------ipv~v~~d~~~L~~aL~~lk-~~~~~DvVLIDTaGRs~kd~ 336 (436)
T PRK11889 297 ------FEVIAVRDEAAMTRALTYFK-EEARVDYILIDTAGKNYRAS 336 (436)
T ss_pred ------CcEEecCCHHHHHHHHHHHH-hccCCCEEEEeCccccCcCH
Confidence 2232 346666666554211 11258999999987765543
No 280
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=93.37 E-value=0.17 Score=51.38 Aligned_cols=41 Identities=20% Similarity=0.398 Sum_probs=32.5
Q ss_pred HHHHHHHHHhcCCe---eEEEEecc--cccccCCCc--ccEEEEeCCC
Q 000607 436 KQNEIVEEFRRGLV---NVIVATSI--LEEGLDVQS--CNLVIMFDPS 476 (1396)
Q Consensus 436 ~r~~~l~~Fr~g~~---nvLVaTsv--leeGiDIp~--~~lVI~fD~p 476 (1396)
+..+++++|++..- .||+++.- ..||||+|+ |..||...+|
T Consensus 32 ~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~glP 79 (142)
T smart00491 32 ETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIVGIP 79 (142)
T ss_pred hHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEEecC
Confidence 34688999987543 58888876 899999998 7888876665
No 281
>PRK05642 DNA replication initiation factor; Validated
Probab=93.36 E-value=0.27 Score=54.65 Aligned_cols=34 Identities=15% Similarity=0.152 Sum_probs=22.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
++++++++|+|||..+..+..++.. .+.+++++.
T Consensus 47 ~l~l~G~~G~GKTHLl~a~~~~~~~-----~~~~v~y~~ 80 (234)
T PRK05642 47 LIYLWGKDGVGRSHLLQAACLRFEQ-----RGEPAVYLP 80 (234)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHh-----CCCcEEEee
Confidence 4789999999999986654443321 234566544
No 282
>smart00358 DSRM Double-stranded RNA binding motif.
Probab=93.35 E-value=0.21 Score=43.09 Aligned_cols=58 Identities=17% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHHHHhhccCCCCCCCCCccEEEE---eC----CeEEEEEEcCCCCCCccccccCCHHHHHHHHHHHHHHHH
Q 000607 561 VSLIYFYCSRLPSDGYFKPTPKFHI---NK----EMGICTLYLPNNCPIQTVIAQGNIKTLKQAACLEACKKL 626 (1396)
Q Consensus 561 i~~l~~yc~~lp~d~~~~~~p~~~i---~~----~~~~~~v~LP~~~p~~~~~~~~~~~~Ak~~aAf~a~~~L 626 (1396)
++.|+.+|++.- ..|.|.+ .+ ..|.|++.+... .-..-...||+.||+.||-+|+..|
T Consensus 2 ~~~L~e~~~~~~------~~~~y~~~~~~g~~~~~~f~~~v~i~~~--~~~~g~g~sKk~Ak~~AA~~al~~L 66 (67)
T smart00358 2 KSLLQELAQKRG------LPPEYELVKEEGPDHAPRFTVTVKVGGE--YTGEGEGSSKKEAKQRAAEAALRSL 66 (67)
T ss_pred chHHHHHHHHCC------CCCEEEEEeeeCCCCCCcEEEEEEECCE--EEEEeccCCHHHHHHHHHHHHHHhc
Confidence 578999998762 2577876 11 379999999542 1111446899999999999999887
No 283
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=93.34 E-value=0.32 Score=56.21 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=18.2
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
+.|+++|+|+|||.+|-++..
T Consensus 50 SmIl~GPPG~GKTTlA~liA~ 70 (436)
T COG2256 50 SMILWGPPGTGKTTLARLIAG 70 (436)
T ss_pred eeEEECCCCCCHHHHHHHHHH
Confidence 699999999999999876554
No 284
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=93.32 E-value=0.13 Score=57.24 Aligned_cols=35 Identities=20% Similarity=0.268 Sum_probs=27.5
Q ss_pred HHHHHHHHHhc---C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALK---Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~---~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|...+...++ + +.+.++|.|+|||-+|.++.+++
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L 81 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARAL 81 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHh
Confidence 67776655543 2 69999999999999998887766
No 285
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=93.12 E-value=0.65 Score=55.04 Aligned_cols=42 Identities=24% Similarity=0.320 Sum_probs=33.1
Q ss_pred ccchHHHHHHHHHHhc----C----CEEEEeCCCchHHHHHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALK----Q----NTIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~----~----n~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
..-|+-|.+-+..++. + |++|.++||+|||.++-.+++++.+
T Consensus 19 l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~~ 68 (366)
T COG1474 19 LPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELEE 68 (366)
T ss_pred ccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHHh
Confidence 3358888887776654 2 7999999999999998888877644
No 286
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=93.07 E-value=0.4 Score=53.12 Aligned_cols=23 Identities=22% Similarity=0.202 Sum_probs=19.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++++.+++|+|||..|..+.+..
T Consensus 40 ~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 40 FLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 69999999999999987766544
No 287
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=93.00 E-value=0.82 Score=55.44 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHh----c----CCEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENAL----K----QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l----~----~n~Iv~~~TGsGKT~iailli~~l 59 (1396)
-|+-|.+.+...+ + .+++|++++|+|||.++-.++..+
T Consensus 34 ~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 34 HREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 4888877666554 2 269999999999999877776655
No 288
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=92.81 E-value=0.45 Score=58.67 Aligned_cols=44 Identities=14% Similarity=0.101 Sum_probs=28.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+++++|+|+|||..+-.+..++.+ ..++.+++++.. ..+..+..
T Consensus 151 l~l~G~~G~GKThL~~ai~~~~~~---~~~~~~v~yi~~-~~~~~~~~ 194 (450)
T PRK00149 151 LFIYGGVGLGKTHLLHAIGNYILE---KNPNAKVVYVTS-EKFTNDFV 194 (450)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEEEH-HHHHHHHH
Confidence 889999999999998776665533 223555666543 34544433
No 289
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=92.59 E-value=0.32 Score=52.42 Aligned_cols=23 Identities=22% Similarity=0.388 Sum_probs=18.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++|+++|+|+|||..|-.+..++
T Consensus 52 h~lf~GPPG~GKTTLA~IIA~e~ 74 (233)
T PF05496_consen 52 HMLFYGPPGLGKTTLARIIANEL 74 (233)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHC
T ss_pred eEEEECCCccchhHHHHHHHhcc
Confidence 49999999999999887655543
No 290
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=92.58 E-value=0.16 Score=65.70 Aligned_cols=69 Identities=14% Similarity=0.010 Sum_probs=54.9
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
+.+-|.+++.. ..+.++|.++.|||||.+.+..+.++.+.. .-+..++++|+-|+.-+....+.+.+.+
T Consensus 3 Ln~~Q~~av~~-~~g~~lV~AgpGSGKT~vL~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~em~~Rl~~~l 71 (672)
T PRK10919 3 LNPGQQQAVEF-VTGPCLVLAGAGSGKTRVITNKIAHLIRGC-GYQARHIAAVTFTNKAAREMKERVAQTL 71 (672)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHhc-CCCHHHeeeEechHHHHHHHHHHHHHHh
Confidence 67889999875 467899999999999999888777765421 2245679999999999888888887754
No 291
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=92.39 E-value=0.67 Score=54.17 Aligned_cols=38 Identities=16% Similarity=0.146 Sum_probs=31.9
Q ss_pred chHHHHHHHHHHhcCC-----EEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQN-----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n-----~Iv~~~TGsGKT~iailli~~l 59 (1396)
..|||...++.+..++ .++.+|.|.|||..|..+.+.+
T Consensus 4 ~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~l 46 (328)
T PRK05707 4 IYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAAL 46 (328)
T ss_pred CCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHH
Confidence 4789999999888753 7799999999999988777665
No 292
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=92.35 E-value=0.28 Score=56.78 Aligned_cols=56 Identities=21% Similarity=0.225 Sum_probs=40.7
Q ss_pred chHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+.|.+.+..+.+. |+||+++||||||...-.++..+. ..++..+++.+=.+.+|
T Consensus 129 ~~~~~~~~L~~~v~~~~nilI~G~tGSGKTTll~aL~~~i~---~~~~~~rivtiEd~~El 186 (323)
T PRK13833 129 MTEAQASVIRSAIDSRLNIVISGGTGSGKTTLANAVIAEIV---ASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHHh---cCCCCceEEEecCCccc
Confidence 356788888888764 899999999999987655554332 22456678888888777
No 293
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=92.12 E-value=0.62 Score=56.50 Aligned_cols=22 Identities=41% Similarity=0.493 Sum_probs=19.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 43 ~Lf~GP~GtGKTTlAriLAk~L 64 (484)
T PRK14956 43 YIFFGPRGVGKTTIARILAKRL 64 (484)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 6999999999999988777654
No 294
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=92.11 E-value=0.19 Score=53.20 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=28.8
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
|+++.+++|+|||..|..++.++.. .+..++|+. ...|+.
T Consensus 49 ~l~l~G~~G~GKThLa~ai~~~~~~-----~g~~v~f~~-~~~L~~ 88 (178)
T PF01695_consen 49 NLILYGPPGTGKTHLAVAIANEAIR-----KGYSVLFIT-ASDLLD 88 (178)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHH-----TT--EEEEE-HHHHHH
T ss_pred EEEEEhhHhHHHHHHHHHHHHHhcc-----CCcceeEee-cCceec
Confidence 7999999999999999998887654 355566653 334543
No 295
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=92.08 E-value=0.67 Score=56.76 Aligned_cols=47 Identities=13% Similarity=0.176 Sum_probs=29.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+++++++|+|||..+..+..++.. ..++.+++++... .+.......+
T Consensus 144 l~i~G~~G~GKTHLl~Ai~~~l~~---~~~~~~v~yv~~~-~f~~~~~~~l 190 (450)
T PRK14087 144 LFIYGESGMGKTHLLKAAKNYIES---NFSDLKVSYMSGD-EFARKAVDIL 190 (450)
T ss_pred eEEECCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEHH-HHHHHHHHHH
Confidence 789999999999887655443322 2345667765553 5544444444
No 296
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=91.87 E-value=0.14 Score=62.75 Aligned_cols=149 Identities=17% Similarity=0.144 Sum_probs=84.8
Q ss_pred chHHHHHHHHHHhc--------C---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK--------Q---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~--------~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-.-|.|++-.|-+ | ..+|-+.-|.||-.+...+|.+ ..+ .+.|++|.+.=+..|-..-.+.++.
T Consensus 265 lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfe--NyL--kGRKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 265 LSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFE--NYL--KGRKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred hhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEeh--hhh--cccceeEEEEeccccccchhhchhh
Confidence 46789998876653 2 4888888888885443333432 112 2456677777666887777777776
Q ss_pred hc--CCeEE--------EEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhh--c-----C-----ccccce-eEE
Q 000607 91 HT--DLKVG--------KYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRL--S-----Y-----FKLNMI-KVL 147 (1396)
Q Consensus 91 ~~--~~~v~--------~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~--~-----~-----~~l~~i-~ll 147 (1396)
.. ++.|. .+.|+.+... .--|+++||..|.---.. + + +.-.++ .+|
T Consensus 341 igA~~I~V~alnK~KYakIss~en~n~-----------krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvI 409 (1300)
T KOG1513|consen 341 IGATGIAVHALNKFKYAKISSKENTNT-----------KRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVI 409 (1300)
T ss_pred cCCCCccceehhhcccccccccccCCc-----------cceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeE
Confidence 43 33333 2333322211 356999999888732221 1 1 111222 699
Q ss_pred EEeccccccCCCc--------HHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 148 ILDECHHARGKHQ--------YACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 148 I~DEaH~~~~~~~--------~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
||||||++++-.| ..+..-++- ..-+..|++--|||-.
T Consensus 410 vfDECHkAKNL~p~~~~k~TKtG~tVLdLQ------k~LP~ARVVYASATGA 455 (1300)
T KOG1513|consen 410 VFDECHKAKNLVPTAGAKSTKTGKTVLDLQ------KKLPNARVVYASATGA 455 (1300)
T ss_pred EehhhhhhcccccccCCCcCcccHhHHHHH------HhCCCceEEEeeccCC
Confidence 9999999987211 111111221 1224467888888843
No 297
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=91.76 E-value=1.2 Score=54.44 Aligned_cols=117 Identities=17% Similarity=0.187 Sum_probs=59.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
.+.++++||+|||.++..++..+.. ...++++.++. .+ +.-...|........++.+..
T Consensus 352 vIaLVGPtGvGKTTtaakLAa~la~---~~~gkkVaLIdtDtyRigA~EQLk~ya~iLgv~v~~---------------- 412 (559)
T PRK12727 352 VIALVGPTGAGKTTTIAKLAQRFAA---QHAPRDVALVTTDTQRVGGREQLHSYGRQLGIAVHE---------------- 412 (559)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH---hcCCCceEEEecccccccHHHHHHHhhcccCceeEe----------------
Confidence 4669999999999998776665432 12233444443 22 322222222222222222211
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
+.+...+...+. .+.+.++||+|.+=....+......+..+.. ....-.+|.+++++.
T Consensus 413 ---------a~d~~~L~~aL~----~l~~~DLVLIDTaG~s~~D~~l~eeL~~L~a------a~~~a~lLVLpAtss 470 (559)
T PRK12727 413 ---------ADSAESLLDLLE----RLRDYKLVLIDTAGMGQRDRALAAQLNWLRA------ARQVTSLLVLPANAH 470 (559)
T ss_pred ---------cCcHHHHHHHHH----HhccCCEEEecCCCcchhhHHHHHHHHHHHH------hhcCCcEEEEECCCC
Confidence 123344444444 2346899999999766443332222222221 112345778888763
No 298
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=91.70 E-value=1 Score=54.44 Aligned_cols=53 Identities=17% Similarity=0.129 Sum_probs=31.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~ 95 (1396)
+++++++|+|||.++..+..++.. .++++.++. .+ ++-+.+|...+....++.
T Consensus 98 I~lvG~~GsGKTTtaakLA~~L~~-----~g~kV~lV~~D~~R~aa~eQL~~la~~~gvp 152 (437)
T PRK00771 98 IMLVGLQGSGKTTTAAKLARYFKK-----KGLKVGLVAADTYRPAAYDQLKQLAEKIGVP 152 (437)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEecCCCCCHHHHHHHHHHHHHcCCc
Confidence 679999999999999887765532 234455544 33 233333444444444444
No 299
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=91.69 E-value=0.81 Score=47.31 Aligned_cols=38 Identities=32% Similarity=0.308 Sum_probs=27.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++|.+++|+|||..+..++..... .+..++|+.....+
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~-----~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIAT-----KGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHh-----cCCEEEEEECCcch
Confidence 579999999999998777665432 35567777665444
No 300
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=91.65 E-value=2.2 Score=50.21 Aligned_cols=118 Identities=16% Similarity=0.184 Sum_probs=68.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
.+.+++|||.|||.+-+-+...+. ......+..+|-..| |.=+..|.....+..++.+
T Consensus 205 vi~LVGPTGVGKTTTlAKLAar~~--~~~~~~kVaiITtDtYRIGA~EQLk~Ya~im~vp~------------------- 263 (407)
T COG1419 205 VIALVGPTGVGKTTTLAKLAARYV--MLKKKKKVAIITTDTYRIGAVEQLKTYADIMGVPL------------------- 263 (407)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHH--hhccCcceEEEEeccchhhHHHHHHHHHHHhCCce-------------------
Confidence 477999999999988666555443 122334444444444 1112222333333223222
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.+|-+|+-|...+. .+.+.++|.+|=+=+-..+..+-.-|+.|... ....-.-|.||||-
T Consensus 264 ------~vv~~~~el~~ai~----~l~~~d~ILVDTaGrs~~D~~~i~el~~~~~~-----~~~i~~~Lvlsat~ 323 (407)
T COG1419 264 ------EVVYSPKELAEAIE----ALRDCDVILVDTAGRSQYDKEKIEELKELIDV-----SHSIEVYLVLSATT 323 (407)
T ss_pred ------EEecCHHHHHHHHH----HhhcCCEEEEeCCCCCccCHHHHHHHHHHHhc-----cccceEEEEEecCc
Confidence 34556776766554 35677999999887776665555557777632 23344567888886
No 301
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=91.65 E-value=0.83 Score=55.87 Aligned_cols=37 Identities=11% Similarity=0.174 Sum_probs=26.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
.+++++|+|+|||..+..+..++.+ ..++.+++++..
T Consensus 132 ~l~lyG~~G~GKTHLl~ai~~~l~~---~~~~~~v~yi~~ 168 (440)
T PRK14088 132 PLFIYGGVGLGKTHLLQSIGNYVVQ---NEPDLRVMYITS 168 (440)
T ss_pred eEEEEcCCCCcHHHHHHHHHHHHHH---hCCCCeEEEEEH
Confidence 3889999999999998766655433 224556777654
No 302
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.63 E-value=0.52 Score=60.79 Aligned_cols=22 Identities=23% Similarity=0.295 Sum_probs=18.8
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 yLFtGPpGtGKTTLARiLAk~L 62 (944)
T PRK14949 41 YLFTGTRGVGKTSLARLFAKGL 62 (944)
T ss_pred EEEECCCCCCHHHHHHHHHHhc
Confidence 5899999999999987777655
No 303
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=91.60 E-value=0.77 Score=55.84 Aligned_cols=35 Identities=14% Similarity=0.149 Sum_probs=25.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
+++++++|+|||..+..+..++.+ ..++.+++++.
T Consensus 139 l~l~G~~G~GKThL~~ai~~~l~~---~~~~~~v~yi~ 173 (405)
T TIGR00362 139 LFIYGGVGLGKTHLLHAIGNEILE---NNPNAKVVYVS 173 (405)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---hCCCCcEEEEE
Confidence 689999999999998776665533 23355666664
No 304
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=91.43 E-value=0.34 Score=57.80 Aligned_cols=55 Identities=16% Similarity=0.211 Sum_probs=38.7
Q ss_pred chHHHHHHHHHHh------cC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 22 ARNYQLEALENAL------KQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l------~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
+.+=|+++++.++ ++ ++.|.++-|+|||++.- .+....+. .++.+++++|| ..+.
T Consensus 2 Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~----~i~~~~~~-~~~~~~~~a~t-g~AA 63 (364)
T PF05970_consen 2 LNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIK----AIIDYLRS-RGKKVLVTAPT-GIAA 63 (364)
T ss_pred CCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHH----HHHHHhcc-ccceEEEecch-HHHH
Confidence 4466888888873 33 68899999999999743 33333333 46779999999 4433
No 305
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=91.31 E-value=1.5 Score=48.18 Aligned_cols=87 Identities=17% Similarity=0.243 Sum_probs=48.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
+.+++|+|+|||.....+..++.+ ..++.+++++... .......+.++.
T Consensus 37 l~l~G~~G~GKTHLL~Ai~~~~~~---~~~~~~v~y~~~~-~f~~~~~~~~~~--------------------------- 85 (219)
T PF00308_consen 37 LFLYGPSGLGKTHLLQAIANEAQK---QHPGKRVVYLSAE-EFIREFADALRD--------------------------- 85 (219)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHH---HCTTS-EEEEEHH-HHHHHHHHHHHT---------------------------
T ss_pred eEEECCCCCCHHHHHHHHHHHHHh---ccccccceeecHH-HHHHHHHHHHHc---------------------------
Confidence 679999999999975444443322 2245566665543 333333333322
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
.....+.+. +...++||+|..|.+.+.......+-..+
T Consensus 86 -------~~~~~~~~~-------~~~~DlL~iDDi~~l~~~~~~q~~lf~l~ 123 (219)
T PF00308_consen 86 -------GEIEEFKDR-------LRSADLLIIDDIQFLAGKQRTQEELFHLF 123 (219)
T ss_dssp -------TSHHHHHHH-------HCTSSEEEEETGGGGTTHHHHHHHHHHHH
T ss_pred -------ccchhhhhh-------hhcCCEEEEecchhhcCchHHHHHHHHHH
Confidence 011222222 34789999999999987643444433333
No 306
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.29 E-value=1.1 Score=56.08 Aligned_cols=22 Identities=27% Similarity=0.341 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.+|..+.+.+
T Consensus 41 ~LFtGP~GvGKTTLAriLAkaL 62 (700)
T PRK12323 41 YLFTGTRGVGKTTLSRILAKSL 62 (700)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999998877765
No 307
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=91.16 E-value=0.44 Score=55.35 Aligned_cols=55 Identities=22% Similarity=0.216 Sum_probs=39.7
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
.+.|.+.+..+.+. |++|+++||||||...-.++..+. ..++..+++.+-.+.+|
T Consensus 134 ~~~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~aL~~~~~---~~~~~~rivtIEd~~El 190 (319)
T PRK13894 134 TAAQREAIIAAVRAHRNILVIGGTGSGKTTLVNAIINEMV---IQDPTERVFIIEDTGEI 190 (319)
T ss_pred CHHHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHhhh---hcCCCceEEEEcCCCcc
Confidence 35678888877663 899999999999977655554432 12455678888888777
No 308
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=91.03 E-value=1.4 Score=53.98 Aligned_cols=100 Identities=17% Similarity=0.147 Sum_probs=52.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHH--HHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQ--QAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q--~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
..|+++|.|+|||.+|-.+.+.+.- ..+ |+..-|.+ .+..+.......+..+.+..+.. .+..+
T Consensus 37 a~Lf~Gp~G~GKTT~ArilAk~LnC----~~~-------~~~~pCg~C~~C~~i~~~~~~Dv~eidaas~~~---vddIR 102 (491)
T PRK14964 37 SILLVGASGVGKTTCARIISLCLNC----SNG-------PTSDPCGTCHNCISIKNSNHPDVIEIDAASNTS---VDDIK 102 (491)
T ss_pred eEEEECCCCccHHHHHHHHHHHHcC----cCC-------CCCCCccccHHHHHHhccCCCCEEEEecccCCC---HHHHH
Confidence 3899999999999998877665421 111 22222222 34445544455666555432111 00111
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHH
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMT 166 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~ 166 (1396)
. +.+...... ...+..++|+||+|.+.. +..+.+++
T Consensus 103 ~--------------Iie~~~~~P-~~~~~KVvIIDEah~Ls~-~A~NaLLK 138 (491)
T PRK14964 103 V--------------ILENSCYLP-ISSKFKVYIIDEVHMLSN-SAFNALLK 138 (491)
T ss_pred H--------------HHHHHHhcc-ccCCceEEEEeChHhCCH-HHHHHHHH
Confidence 1 111111111 135789999999998865 34444443
No 309
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=91.00 E-value=1.2 Score=46.34 Aligned_cols=23 Identities=26% Similarity=0.410 Sum_probs=20.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.|+.+|.|+||+..|..+++.+.
T Consensus 22 ~L~~G~~g~gk~~~a~~~a~~ll 44 (162)
T PF13177_consen 22 LLFHGPSGSGKKTLALAFARALL 44 (162)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHHHc
Confidence 79999999999999988887663
No 310
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=90.95 E-value=1 Score=56.31 Aligned_cols=46 Identities=13% Similarity=0.066 Sum_probs=29.0
Q ss_pred C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH
Q 000607 37 N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE 86 (1396)
Q Consensus 37 n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~ 86 (1396)
| ++|++++|+|||+.+..+...+.. ...+.+++++.- ..++.+...
T Consensus 315 NpL~LyG~sGsGKTHLL~AIa~~a~~---~~~g~~V~Yita-eef~~el~~ 361 (617)
T PRK14086 315 NPLFIYGESGLGKTHLLHAIGHYARR---LYPGTRVRYVSS-EEFTNEFIN 361 (617)
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHHH---hCCCCeEEEeeH-HHHHHHHHH
Confidence 5 889999999999987765554422 123556666543 345444433
No 311
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=90.95 E-value=0.95 Score=51.22 Aligned_cols=55 Identities=18% Similarity=0.122 Sum_probs=35.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc---CC---CCcEEEEEeCCcccHHHHHHHHHHhcCCe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR---KP---SPFVAVFLVPKVVLVPQQAEAIKMHTDLK 95 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~---~~---~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~ 95 (1396)
|.+++++||-|||.++ +++...-. .. ..+.+.+-+|..+=..-.+..|-..++..
T Consensus 63 ~lLivG~snnGKT~Ii----~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~IL~~lgaP 123 (302)
T PF05621_consen 63 NLLIVGDSNNGKTMII----ERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSAILEALGAP 123 (302)
T ss_pred ceEEecCCCCcHHHHH----HHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHHHHHHhCcc
Confidence 7999999999999874 44433111 01 12456666777777777777776655443
No 312
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=90.83 E-value=0.82 Score=55.83 Aligned_cols=34 Identities=21% Similarity=0.200 Sum_probs=25.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVP 76 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvP 76 (1396)
+++++|+|+|||..+..+..++.. .+.+++++..
T Consensus 144 l~L~G~~G~GKTHLl~Ai~~~l~~-----~~~~v~yi~~ 177 (445)
T PRK12422 144 IYLFGPEGSGKTHLMQAAVHALRE-----SGGKILYVRS 177 (445)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----cCCCEEEeeH
Confidence 889999999999998776665532 2455666653
No 313
>PRK08939 primosomal protein DnaI; Reviewed
Probab=90.80 E-value=0.57 Score=54.18 Aligned_cols=24 Identities=17% Similarity=0.319 Sum_probs=21.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
++++.+++|+|||+.+..+..++.
T Consensus 158 gl~L~G~~G~GKThLa~Aia~~l~ 181 (306)
T PRK08939 158 GLYLYGDFGVGKSYLLAAIANELA 181 (306)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 688999999999999998887765
No 314
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=90.71 E-value=3.6 Score=49.54 Aligned_cols=55 Identities=16% Similarity=0.069 Sum_probs=34.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe--CCcccHHHHHHHHHHhcCCeEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV--PKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv--Pt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+.+++++|+|||.++..+..++.. .++++++++ +.++-+.+|.+......++.+.
T Consensus 103 i~lvG~~GvGKTTtaaKLA~~l~~-----~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp~~ 159 (429)
T TIGR01425 103 IMFVGLQGSGKTTTCTKLAYYYQR-----KGFKPCLVCADTFRAGAFDQLKQNATKARIPFY 159 (429)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----CCCCEEEEcCcccchhHHHHHHHHhhccCCeEE
Confidence 569999999999988877665432 244555554 3355555555555555555554
No 315
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=90.67 E-value=1.2 Score=56.64 Aligned_cols=22 Identities=18% Similarity=0.294 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.++..+.+.+
T Consensus 41 yLFtGPpGvGKTTlAriLAKaL 62 (830)
T PRK07003 41 YLFTGTRGVGKTTLSRIFAKAL 62 (830)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777765
No 316
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=90.59 E-value=0.94 Score=53.63 Aligned_cols=30 Identities=13% Similarity=0.238 Sum_probs=22.2
Q ss_pred ccceeEEEEeccccccCC--CcHHHHHHHHHH
Q 000607 141 LNMIKVLILDECHHARGK--HQYACIMTEFYH 170 (1396)
Q Consensus 141 l~~i~llI~DEaH~~~~~--~~~~~im~~f~~ 170 (1396)
+..+++|||||.--.... .....+|+.+..
T Consensus 258 v~~~DlLI~DEvgylp~~~~~~~v~imK~yMe 289 (449)
T TIGR02688 258 VGRWDVVAFDEVATLKFAKPKELIGILKNYME 289 (449)
T ss_pred hccCCEEEEEcCCCCcCCchHHHHHHHHHHHH
Confidence 468999999999985533 235688988774
No 317
>PRK11054 helD DNA helicase IV; Provisional
Probab=90.48 E-value=0.43 Score=61.33 Aligned_cols=71 Identities=18% Similarity=0.116 Sum_probs=55.2
Q ss_pred ccchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 20 PFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
..+.+-|.+++... .++++|.+..|||||.+.+..+.++.... ...+.++++|+.|+..+....+.+...+
T Consensus 195 ~~L~~~Q~~av~~~-~~~~lV~agaGSGKT~vl~~r~ayLl~~~-~~~~~~IL~ltft~~AA~em~eRL~~~l 265 (684)
T PRK11054 195 SPLNPSQARAVVNG-EDSLLVLAGAGSGKTSVLVARAGWLLARG-QAQPEQILLLAFGRQAAEEMDERIRERL 265 (684)
T ss_pred CCCCHHHHHHHhCC-CCCeEEEEeCCCCHHHHHHHHHHHHHHhC-CCCHHHeEEEeccHHHHHHHHHHHHHhc
Confidence 34789999998644 36789999999999999988777665432 2245679999999999888888887654
No 318
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=90.48 E-value=3.7 Score=48.78 Aligned_cols=23 Identities=22% Similarity=0.166 Sum_probs=20.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.++.+|.|+|||..|..+++.++
T Consensus 44 ~Lf~Gp~G~GK~~lA~~~A~~Ll 66 (365)
T PRK07471 44 WLIGGPQGIGKATLAYRMARFLL 66 (365)
T ss_pred EEEECCCCCCHHHHHHHHHHHHh
Confidence 88999999999999988887663
No 319
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=90.40 E-value=1.1 Score=55.21 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=19.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
..|+++|.|+|||.+|-.+.+.+
T Consensus 45 a~Lf~Gp~G~GKTT~ArilAk~L 67 (507)
T PRK06645 45 GYLLTGIRGVGKTTSARIIAKAV 67 (507)
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 38899999999999998777765
No 320
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=90.39 E-value=1.3 Score=55.50 Aligned_cols=36 Identities=33% Similarity=0.355 Sum_probs=25.7
Q ss_pred HHHHHHHHHHhcCC-----EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQN-----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~n-----~Iv~~~TGsGKT~iailli~~l 59 (1396)
++=.+.+..+++++ .|+++|.|+|||.+|-.+.+.+
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~L 61 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCL 61 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33345555555532 5999999999999988777655
No 321
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=90.38 E-value=0.52 Score=54.39 Aligned_cols=53 Identities=32% Similarity=0.312 Sum_probs=37.2
Q ss_pred HHHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 25 YQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 25 yQ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
-|.+.+..+.+ +|++|+++||||||..+-.++..+. ..++..+++.+-.+.+|
T Consensus 120 ~~~~~L~~~v~~~~~ilI~G~tGSGKTTll~al~~~i~---~~~~~~ri~tiEd~~El 174 (299)
T TIGR02782 120 AQRDVLREAVLARKNILVVGGTGSGKTTLANALLAEIA---KNDPTDRVVIIEDTREL 174 (299)
T ss_pred HHHHHHHHHHHcCCeEEEECCCCCCHHHHHHHHHHHhh---ccCCCceEEEECCchhh
Confidence 35666777666 3899999999999988655554331 12345678888887776
No 322
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=90.31 E-value=0.22 Score=55.48 Aligned_cols=77 Identities=26% Similarity=0.361 Sum_probs=48.1
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
.|+++.+|||||||+.|-.+.+.+ +- -+-++.-..| .-.-|.|++ +.
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~L-------nV--PFaiADATtL--------------TEAGYVGED-VE--------- 144 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKIL-------NV--PFAIADATTL--------------TEAGYVGED-VE--------- 144 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHh-------CC--Ceeeccccch--------------hhccccchh-HH---------
Confidence 389999999999999988777655 11 2333333333 223456652 11
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccc--cceeEEEEeccccccC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKL--NMIKVLILDECHHARG 157 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l--~~i~llI~DEaH~~~~ 157 (1396)
.+++.+++....+. ..-..|.+||.+.+..
T Consensus 145 ------------NillkLlqaadydV~rAerGIIyIDEIDKIar 176 (408)
T COG1219 145 ------------NILLKLLQAADYDVERAERGIIYIDEIDKIAR 176 (408)
T ss_pred ------------HHHHHHHHHcccCHHHHhCCeEEEechhhhhc
Confidence 24566666554433 3357899999998864
No 323
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=90.12 E-value=1.3 Score=52.49 Aligned_cols=38 Identities=29% Similarity=0.323 Sum_probs=29.1
Q ss_pred chHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++...+.+..+.+. ++++.+|+|+|||..|..+.+.+
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l 60 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALAREL 60 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 466666666666653 48899999999999988777655
No 324
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=90.00 E-value=0.77 Score=52.61 Aligned_cols=24 Identities=25% Similarity=0.220 Sum_probs=19.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYA 60 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~ 60 (1396)
.+++++|||+|||.++..++.++.
T Consensus 196 vi~~vGptGvGKTTt~~kLa~~~~ 219 (282)
T TIGR03499 196 VIALVGPTGVGKTTTLAKLAARFV 219 (282)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 366999999999999887776553
No 325
>PHA02533 17 large terminase protein; Provisional
Probab=89.96 E-value=2.1 Score=53.46 Aligned_cols=120 Identities=18% Similarity=0.219 Sum_probs=69.8
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---C--
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---D-- 93 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---~-- 93 (1396)
..++++|.+++..+..+ -.++..+=..|||.++..++..++- . .++..+++++|+..-+....+.++... +
T Consensus 58 f~L~p~Q~~i~~~~~~~R~~ii~~aRq~GKStl~a~~al~~a~-~--~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~l 134 (534)
T PHA02533 58 VQMRDYQKDMLKIMHKNRFNACNLSRQLGKTTVVAIFLLHYVC-F--NKDKNVGILAHKASMAAEVLDRTKQAIELLPDF 134 (534)
T ss_pred cCCcHHHHHHHHHHhcCeEEEEEEcCcCChHHHHHHHHHHHHH-h--CCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHHH
Confidence 55899999999887544 3578889999999988754432221 1 245689999999766665555555322 1
Q ss_pred CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 94 LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 94 ~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.+.+.. .++... -....++.|.+.|... +..+-...+++|+||+|...+
T Consensus 135 ~~~~i~-------~~~~~~-I~l~NGS~I~~lss~~-------~t~rG~~~~~liiDE~a~~~~ 183 (534)
T PHA02533 135 LQPGIV-------EWNKGS-IELENGSKIGAYASSP-------DAVRGNSFAMIYIDECAFIPN 183 (534)
T ss_pred hhccee-------ecCccE-EEeCCCCEEEEEeCCC-------CccCCCCCceEEEeccccCCC
Confidence 111110 011100 0001245565555321 112234678999999998754
No 326
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=89.73 E-value=0.46 Score=62.22 Aligned_cols=71 Identities=18% Similarity=0.094 Sum_probs=55.9
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
.+.+-|.+++.. ..++++|.+..|||||.+.+..|.++.+.. .-+..++++|+-|+..+....+.+.+..+
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~L~~Ria~Li~~~-~v~p~~IL~lTFTnkAA~em~~Rl~~~~~ 74 (715)
T TIGR01075 4 GLNDKQREAVAA-PPGNLLVLAGAGSGKTRVLTHRIAWLLSVE-NASPHSIMAVTFTNKAAAEMRHRIGALLG 74 (715)
T ss_pred ccCHHHHHHHcC-CCCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCCHHHeEeeeccHHHHHHHHHHHHHHhc
Confidence 378899999865 357899999999999999887777665421 22456799999999998888888887643
No 327
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=89.73 E-value=0.55 Score=61.50 Aligned_cols=71 Identities=18% Similarity=0.168 Sum_probs=56.1
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
.+.+-|.+++... .++++|.+..|||||.+.+..|.++.+.. .-+..++++|+-|+..+....+.+.+..+
T Consensus 9 ~Ln~~Q~~av~~~-~g~~lV~AgaGSGKT~vl~~Ria~Li~~~-~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~ 79 (721)
T PRK11773 9 SLNDKQREAVAAP-LGNMLVLAGAGSGKTRVLVHRIAWLMQVE-NASPYSIMAVTFTNKAAAEMRHRIEQLLG 79 (721)
T ss_pred hcCHHHHHHHhCC-CCCEEEEecCCCCHHHHHHHHHHHHHHcC-CCChhHeEeeeccHHHHHHHHHHHHHHhc
Confidence 3788999998743 57899999999999999887776665421 22456799999999999988888887643
No 328
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.68 E-value=2.4 Score=52.69 Aligned_cols=22 Identities=27% Similarity=0.327 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (509)
T PRK14958 41 YLFTGTRGVGKTTISRILAKCL 62 (509)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988777765
No 329
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=89.60 E-value=0.44 Score=57.52 Aligned_cols=49 Identities=29% Similarity=0.293 Sum_probs=38.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCC-CCcEEEEEeCCcccHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKP-SPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~-~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
=.||.+..|||||.+|+-.+.+++...|.+ .++.++++.|.+.+..=..
T Consensus 228 ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis 277 (747)
T COG3973 228 ILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYIS 277 (747)
T ss_pred eEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHH
Confidence 388999999999999998777777666655 4455999999977644333
No 330
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=89.58 E-value=0.95 Score=54.30 Aligned_cols=37 Identities=24% Similarity=0.163 Sum_probs=26.1
Q ss_pred chHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~ 58 (1396)
+..-...++.....+ |+|+.+++|+|||.+|-.+...
T Consensus 180 ~e~~le~l~~~L~~~~~iil~GppGtGKT~lA~~la~~ 217 (459)
T PRK11331 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYL 217 (459)
T ss_pred CHHHHHHHHHHHhcCCCEEEECCCCCCHHHHHHHHHHH
Confidence 444444555555544 8999999999999998655543
No 331
>PTZ00293 thymidine kinase; Provisional
Probab=89.50 E-value=1.1 Score=48.25 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=25.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKV 78 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~ 78 (1396)
.++++|+|||||.-.+..+..+.. .+++++++-|..
T Consensus 7 ~vi~GpMfSGKTteLLr~i~~y~~-----ag~kv~~~kp~~ 42 (211)
T PTZ00293 7 SVIIGPMFSGKTTELMRLVKRFTY-----SEKKCVVIKYSK 42 (211)
T ss_pred EEEECCCCChHHHHHHHHHHHHHH-----cCCceEEEEecc
Confidence 468999999999765555544322 466788888863
No 332
>PRK08116 hypothetical protein; Validated
Probab=89.50 E-value=1.9 Score=48.92 Aligned_cols=42 Identities=17% Similarity=0.244 Sum_probs=29.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
+++.+++|+|||+.|..+..++.. .+..++++ +...|..+..
T Consensus 117 l~l~G~~GtGKThLa~aia~~l~~-----~~~~v~~~-~~~~ll~~i~ 158 (268)
T PRK08116 117 LLLWGSVGTGKTYLAACIANELIE-----KGVPVIFV-NFPQLLNRIK 158 (268)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEE-EHHHHHHHHH
Confidence 899999999999999887776643 24445554 4445555543
No 333
>PLN03025 replication factor C subunit; Provisional
Probab=89.50 E-value=2.2 Score=49.93 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++++++|+|+|||..|..+.+++
T Consensus 36 ~lll~Gp~G~GKTtla~~la~~l 58 (319)
T PLN03025 36 NLILSGPPGTGKTTSILALAHEL 58 (319)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999988777765
No 334
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=89.36 E-value=5.5 Score=48.23 Aligned_cols=57 Identities=16% Similarity=0.031 Sum_probs=35.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGK 98 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~ 98 (1396)
+++++++|+|||.++..++.++.. . .+++++++. . .++-+.+|.+.+....++.+..
T Consensus 102 i~~vG~~GsGKTTtaakLA~~l~~---~-~g~kV~lV~~D~~R~~a~~QL~~~a~~~gvp~~~ 160 (428)
T TIGR00959 102 ILMVGLQGSGKTTTCGKLAYYLKK---K-QGKKVLLVACDLYRPAAIEQLKVLGQQVGVPVFA 160 (428)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHH---h-CCCeEEEEeccccchHHHHHHHHHHHhcCCceEe
Confidence 679999999999999887766531 1 234455444 3 3444555555555555655443
No 335
>PRK10867 signal recognition particle protein; Provisional
Probab=89.22 E-value=3.2 Score=50.19 Aligned_cols=56 Identities=14% Similarity=0.024 Sum_probs=34.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe--CCcccHHHHHHHHHHhcCCeEE
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV--PKVVLVPQQAEAIKMHTDLKVG 97 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv--Pt~~Lv~Q~~~~i~~~~~~~v~ 97 (1396)
+++++++|+|||.+++.++.++... .+++++++. +.++-+..|...+....++.+.
T Consensus 103 I~~vG~~GsGKTTtaakLA~~l~~~----~G~kV~lV~~D~~R~aa~eQL~~~a~~~gv~v~ 160 (433)
T PRK10867 103 IMMVGLQGAGKTTTAGKLAKYLKKK----KKKKVLLVAADVYRPAAIEQLKTLGEQIGVPVF 160 (433)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHh----cCCcEEEEEccccchHHHHHHHHHHhhcCCeEE
Confidence 6699999999999998877765431 244455544 3444444344444444555543
No 336
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=89.14 E-value=1.9 Score=53.40 Aligned_cols=22 Identities=23% Similarity=0.181 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||.+|..+.+.+
T Consensus 39 ~Lf~GppGtGKTTlA~~lA~~l 60 (504)
T PRK14963 39 YLFSGPRGVGKTTTARLIAMAV 60 (504)
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 4999999999999988777765
No 337
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.84 E-value=2 Score=52.88 Aligned_cols=35 Identities=34% Similarity=0.359 Sum_probs=24.6
Q ss_pred HHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
.-.+.+..++.. + .|+++|+|+|||.+|-.+.+.+
T Consensus 21 ~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l 60 (472)
T PRK14962 21 HVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSL 60 (472)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 334455555443 2 6899999999999987776654
No 338
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.79 E-value=0.55 Score=55.00 Aligned_cols=50 Identities=22% Similarity=0.232 Sum_probs=34.2
Q ss_pred HHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 26 QLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 26 Q~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
..+.+..+.+ +|++|+++||||||...-.++..+ ++..+++.+-++.+|.
T Consensus 151 ~~~~l~~~v~~~~nilI~G~tGSGKTTll~aLl~~i------~~~~rivtiEd~~El~ 202 (344)
T PRK13851 151 LEAFLHACVVGRLTMLLCGPTGSGKTTMSKTLISAI------PPQERLITIEDTLELV 202 (344)
T ss_pred HHHHHHHHHHcCCeEEEECCCCccHHHHHHHHHccc------CCCCCEEEECCCcccc
Confidence 3445555554 489999999999998755444332 3455677788887773
No 339
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=88.77 E-value=1.1 Score=58.05 Aligned_cols=80 Identities=19% Similarity=0.339 Sum_probs=67.2
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-ccccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-ILEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-vleeGiDI 464 (1396)
++.+++|.++++.-|...++.++.+.+. .++++..++|+. +.+++.++++...+|+.+|+|+|. .+..++.+
T Consensus 309 ~g~q~lilaPT~~LA~Q~~~~l~~l~~~-~~i~v~ll~G~~------~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~v~~ 381 (681)
T PRK10917 309 AGYQAALMAPTEILAEQHYENLKKLLEP-LGIRVALLTGSL------KGKERREILEAIASGEADIVIGTHALIQDDVEF 381 (681)
T ss_pred cCCeEEEEeccHHHHHHHHHHHHHHHhh-cCcEEEEEcCCC------CHHHHHHHHHHHhCCCCCEEEchHHHhcccchh
Confidence 5779999999999999998888876433 368999999984 888999999999999999999996 45667778
Q ss_pred CcccEEEE
Q 000607 465 QSCNLVIM 472 (1396)
Q Consensus 465 p~~~lVI~ 472 (1396)
.++.+||.
T Consensus 382 ~~l~lvVI 389 (681)
T PRK10917 382 HNLGLVII 389 (681)
T ss_pred cccceEEE
Confidence 88887773
No 340
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=88.62 E-value=0.78 Score=53.70 Aligned_cols=49 Identities=29% Similarity=0.242 Sum_probs=33.2
Q ss_pred HHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 27 LEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 27 ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
.+.+..+.+ +|++|+++||||||...-.++..+ +...+++.+=.+.+|.
T Consensus 150 ~~~L~~~v~~~~nili~G~tgSGKTTll~aL~~~i------p~~~ri~tiEd~~El~ 200 (332)
T PRK13900 150 KEFLEHAVISKKNIIISGGTSTGKTTFTNAALREI------PAIERLITVEDAREIV 200 (332)
T ss_pred HHHHHHHHHcCCcEEEECCCCCCHHHHHHHHHhhC------CCCCeEEEecCCCccc
Confidence 344555554 399999999999998754444433 3456777777777763
No 341
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.52 E-value=1.5 Score=55.11 Aligned_cols=33 Identities=24% Similarity=0.273 Sum_probs=24.8
Q ss_pred HHHHHHHhcC-----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 27 LEALENALKQ-----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 27 ~e~~~~~l~~-----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+.+..+++. ..|+.+|.|+|||.+|..+.+.+
T Consensus 25 ~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L 62 (624)
T PRK14959 25 KAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKAL 62 (624)
T ss_pred HHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhc
Confidence 4455555543 37799999999999998877765
No 342
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=88.45 E-value=4.6 Score=48.22 Aligned_cols=119 Identities=13% Similarity=0.109 Sum_probs=60.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++|+|+|||.++..++.++.. . .++++.++. .+ +..+.+|........++.+.
T Consensus 226 i~lvGptGvGKTTtaaKLA~~~~~---~-~G~~V~Lit~Dt~R~aA~eQLk~yAe~lgvp~~------------------ 283 (432)
T PRK12724 226 VFFVGPTGSGKTTSIAKLAAKYFL---H-MGKSVSLYTTDNYRIAAIEQLKRYADTMGMPFY------------------ 283 (432)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH---h-cCCeEEEecccchhhhHHHHHHHHHHhcCCCee------------------
Confidence 569999999999998877654321 1 233444433 33 33333333333333332211
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIK 192 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~ 192 (1396)
.+..+..+.+.+. -.+.++||+|=+-+...+.....-|..+.... ....+...+|.|+||-..
T Consensus 284 -------~~~~~~~l~~~l~-----~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~--~~~~~~e~~LVLsAt~~~ 346 (432)
T PRK12724 284 -------PVKDIKKFKETLA-----RDGSELILIDTAGYSHRNLEQLERMQSFYSCF--GEKDSVENLLVLSSTSSY 346 (432)
T ss_pred -------ehHHHHHHHHHHH-----hCCCCEEEEeCCCCCccCHHHHHHHHHHHHhh--cCCCCCeEEEEEeCCCCH
Confidence 0111222333332 25679999998766544433344445544321 011233468889998644
No 343
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=88.44 E-value=0.28 Score=51.88 Aligned_cols=41 Identities=15% Similarity=0.170 Sum_probs=28.4
Q ss_pred hccCcEEEecHHHHHHhHhhcCcc--ccceeEEEEeccccccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFK--LNMIKVLILDECHHARG 157 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~--l~~i~llI~DEaH~~~~ 157 (1396)
...++|||+++..|++-.....+. ...-.+|||||||++-+
T Consensus 117 ~~~adivi~~y~yl~~~~~~~~~~~~~~~~~ivI~DEAHNL~~ 159 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDPSIRKSLFGIDLKDNIVIFDEAHNLED 159 (174)
T ss_dssp GGG-SEEEEETHHHHSHHHHHHHCT--CCCEEEEETTGGGCGG
T ss_pred cccCCEEEeCHHHHhhHHHHhhhccccccCcEEEEecccchHH
Confidence 347899999999988654333221 23457999999999865
No 344
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.41 E-value=1.8 Score=52.31 Aligned_cols=36 Identities=22% Similarity=0.240 Sum_probs=25.8
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.-.+.+..++++ + .|+++|.|+|||.+|..+.+.+
T Consensus 22 ~~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l 62 (397)
T PRK14955 22 EHITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAV 62 (397)
T ss_pred HHHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHh
Confidence 3334455555553 2 7899999999999998777655
No 345
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=88.41 E-value=0.78 Score=59.79 Aligned_cols=88 Identities=15% Similarity=0.001 Sum_probs=64.4
Q ss_pred chHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 22 ARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
+.+-|.+++.. ..++++|.+..|||||.+.+..|.++... ...+.+++++|+.|+.-+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~-~~~~~~V~Ag~GSGKT~~L~~ri~~ll~~-~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~------ 73 (664)
T TIGR01074 2 LNPQQQEAVEY-VTGPCLVLAGAGSGKTRVITNKIAYLIQN-CGYKARNIAAVTFTNKAAREMKERVAKTLGKG------ 73 (664)
T ss_pred CCHHHHHHHhC-CCCCEEEEecCCCCHHHHHHHHHHHHHHh-cCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc------
Confidence 56789888864 46799999999999999988777666542 12245679999999888888888777654310
Q ss_pred CCCcccCCccchHHhhccCcEEEecHHHHHHh
Q 000607 102 DMGVDFWDGATWKEEMSKHEVLVMTPQILLDG 133 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~ 133 (1396)
...+|.|.|-..|...
T Consensus 74 ----------------~~~~v~v~TfHs~a~~ 89 (664)
T TIGR01074 74 ----------------EARGLTISTFHTLGLD 89 (664)
T ss_pred ----------------ccCCeEEEeHHHHHHH
Confidence 0246889998877643
No 346
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=88.38 E-value=2.8 Score=47.79 Aligned_cols=112 Identities=13% Similarity=0.012 Sum_probs=57.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH-hcCCeEEEEeCCCCcccCCccc---
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM-HTDLKVGKYWGDMGVDFWDGAT--- 112 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~-~~~~~v~~~~G~~~~~~~~~~~--- 112 (1396)
-+++.+++|+|||..+..++..++. ..+.+++|+.-- .-..+....+.. ..+..+..... ...++.+.
T Consensus 32 ~~~i~g~~G~GKT~l~~~~~~~~~~----~~g~~vl~iS~E-~~~~~~~~r~~~~~~~~~~~~~~~---~~~~~~~~~~~ 103 (271)
T cd01122 32 LIILTAGTGVGKTTFLREYALDLIT----QHGVRVGTISLE-EPVVRTARRLLGQYAGKRLHLPDT---VFIYTLEEFDA 103 (271)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHH----hcCceEEEEEcc-cCHHHHHHHHHHHHhCCCcccCCc---cccccHHHHHH
Confidence 3789999999999988776655432 125567777643 233455554433 23433321111 11122222
Q ss_pred hHHhhcc-CcEEEe------cHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 113 WKEEMSK-HEVLVM------TPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 113 ~~~~~~~-~~ViV~------T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
|...+.. ..+.+. |...+.+.+..- ..-..+++||+|..+.+..
T Consensus 104 ~~~~~~~~~~l~i~d~~~~~~~~~i~~~i~~~-~~~~~~~~vvID~l~~l~~ 154 (271)
T cd01122 104 AFDEFEGTGRLFMYDSFGEYSMDSVLEKVRYM-AVSHGIQHIIIDNLSIMVS 154 (271)
T ss_pred HHHHhcCCCcEEEEcCCCccCHHHHHHHHHHH-HhcCCceEEEECCHHHHhc
Confidence 2222221 223221 444454444321 1123689999999888764
No 347
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=88.35 E-value=2.5 Score=53.69 Aligned_cols=32 Identities=38% Similarity=0.402 Sum_probs=23.6
Q ss_pred HHHHHHhcC-C----EEEEeCCCchHHHHHHHHHHHH
Q 000607 28 EALENALKQ-N----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 28 e~~~~~l~~-n----~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.+..++.. + .|+.+|.|+|||.+|-.+.+.+
T Consensus 26 ~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L 62 (647)
T PRK07994 26 TALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGL 62 (647)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 344444443 2 5899999999999998877765
No 348
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=88.34 E-value=1.9 Score=53.68 Aligned_cols=146 Identities=12% Similarity=0.048 Sum_probs=79.2
Q ss_pred HHHHHHHHHHhc-----C-----CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC
Q 000607 24 NYQLEALENALK-----Q-----NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD 93 (1396)
Q Consensus 24 ~yQ~e~~~~~l~-----~-----n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~ 93 (1396)
|+|.-++..+.. + .+++..+=|-|||..+..+....+ ......+..+++.++++.-+....+.++....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l-~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYML-FLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHH-hcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 578877776662 1 388999999999988776543222 12233567899999998777777777766542
Q ss_pred CeEEE--EeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHh--hcCccccceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 94 LKVGK--YWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLR--LSYFKLNMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 94 ~~v~~--~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
..-.. ..+. .. +. .....|..-..+.+...+. .+...-.+.+++|+||+|...++..|..+....-
T Consensus 80 ~~~~l~~~~~~-~~-------~~--~~~~~i~~~~~~s~~~~~s~~~~~~dG~~~~~~i~DE~h~~~~~~~~~~l~~g~~ 149 (477)
T PF03354_consen 80 ASPELRKRKKP-KI-------IK--SNKKEIEFPKTGSFFKALSSDADSLDGLNPSLAIFDELHAHKDDELYDALESGMG 149 (477)
T ss_pred hChhhccchhh-hh-------hh--hhceEEEEcCCCcEEEEEecCCCCccCCCCceEEEeCCCCCCCHHHHHHHHhhhc
Confidence 10000 0000 00 00 0011222211111111111 1122234678999999999987555555444332
Q ss_pred HhhccCCCCCCCeEEEEe
Q 000607 170 HRLLETGDSNLPRIFGMT 187 (1396)
Q Consensus 170 ~~~~~~~~~~~p~ilgLT 187 (1396)
....|.++..|
T Consensus 150 -------~r~~pl~~~IS 160 (477)
T PF03354_consen 150 -------ARPNPLIIIIS 160 (477)
T ss_pred -------cCCCceEEEEe
Confidence 23457766664
No 349
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=88.12 E-value=0.99 Score=51.45 Aligned_cols=124 Identities=18% Similarity=0.108 Sum_probs=71.6
Q ss_pred chHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
..+-|..-++.+.+.+ +...+|-|+|||+.|+...... +....-++++.-=|-+++ |.+.+.+=
T Consensus 129 kt~~Q~~y~eai~~~di~fGiGpAGTGKTyLava~av~a---l~~~~v~rIiLtRPaVEA------------GEklGfLP 193 (348)
T COG1702 129 KTPGQNMYPEAIEEHDIVFGIGPAGTGKTYLAVAKAVDA---LGAGQVRRIILTRPAVEA------------GEKLGFLP 193 (348)
T ss_pred cChhHHHHHHHHHhcCeeeeecccccCChhhhHHhHhhh---hhhcccceeeecCcchhc------------CcccCcCC
Confidence 3568888888888887 5588899999999998754433 223345566655564433 56666666
Q ss_pred CCCC--cccCCccchHHhhccCcEEEecHHHHHHhHhhcC--------ccccc--eeEEEEeccccccCCCcHHHHHHHH
Q 000607 101 GDMG--VDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSY--------FKLNM--IKVLILDECHHARGKHQYACIMTEF 168 (1396)
Q Consensus 101 G~~~--~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~--------~~l~~--i~llI~DEaH~~~~~~~~~~im~~f 168 (1396)
|+.. ++.+....++.+.+ ++-+.....++..+. ++-.. =.++|+||||+..- .-|+.|
T Consensus 194 Gdl~eKvdPylRPLyDAl~d-----~l~~~~~~~~~e~~vIEiAPlAyMRGRTL~dAfVIlDEaQNtT~-----~QmKMf 263 (348)
T COG1702 194 GDLREKVDPYLRPLYDALYD-----ILGAERVEALDERGVIEIAPLAYMRGRTLNDAFVILDEAQNTTV-----GQMKMF 263 (348)
T ss_pred CchhhhcccccccHHHHHHH-----HhhHHHHhhhhhcCcEEecchhhhhcCCCCCeEEEEecccccch-----hhhcee
Confidence 6643 34333444444332 122222222223322 22222 26999999998542 236667
Q ss_pred HH
Q 000607 169 YH 170 (1396)
Q Consensus 169 ~~ 170 (1396)
+.
T Consensus 264 LT 265 (348)
T COG1702 264 LT 265 (348)
T ss_pred ee
Confidence 63
No 350
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.11 E-value=1.7 Score=55.02 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|++++.|+|||.+|..+.+.+
T Consensus 41 ~Lf~Gp~GvGKTtlAr~lAk~L 62 (618)
T PRK14951 41 YLFTGTRGVGKTTVSRILAKSL 62 (618)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
No 351
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=88.05 E-value=5.4 Score=45.19 Aligned_cols=118 Identities=14% Similarity=0.054 Sum_probs=61.9
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCc--ccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKV--VLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~--~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+.+++++|+|||..+..+...+.. .++++.++. .+. ..+.||...... .++.+.
T Consensus 77 ~i~~~G~~g~GKTtl~~~l~~~l~~-----~~~~v~~i~~D~~ri~~~~ql~~~~~~-~~~~~~---------------- 134 (270)
T PRK06731 77 TIALIGPTGVGKTTTLAKMAWQFHG-----KKKTVGFITTDHSRIGTVQQLQDYVKT-IGFEVI---------------- 134 (270)
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHH-----cCCeEEEEecCCCCHHHHHHHHHHhhh-cCceEE----------------
Confidence 3679999999999987766654422 233444444 332 455666544332 222221
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
...++..+.+.+..- -...+.+++|+|-+=+...+...-.-|..+... ..+...+|-|+||-.
T Consensus 135 ---------~~~~~~~l~~~l~~l-~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~-----~~~~~~~LVl~a~~~ 197 (270)
T PRK06731 135 ---------AVRDEAAMTRALTYF-KEEARVDYILIDTAGKNYRASETVEEMIETMGQ-----VEPDYICLTLSASMK 197 (270)
T ss_pred ---------ecCCHHHHHHHHHHH-HhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhh-----hCCCeEEEEEcCccC
Confidence 113455555444311 112468999999987665443333333344321 112224667888753
No 352
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=88.05 E-value=3.1 Score=49.16 Aligned_cols=22 Identities=23% Similarity=0.209 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++.+|.|+|||..|..+++.+
T Consensus 48 ~L~~G~~G~GKttlA~~lA~~L 69 (351)
T PRK09112 48 LLFEGPEGIGKATLAFHLANHI 69 (351)
T ss_pred EeeECCCCCCHHHHHHHHHHHH
Confidence 8899999999999988777765
No 353
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=88.02 E-value=2.9 Score=52.69 Aligned_cols=22 Identities=36% Similarity=0.311 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+.+.+
T Consensus 38 ~Lf~Gp~G~GKTt~A~~lAk~l 59 (584)
T PRK14952 38 YLFSGPRGCGKTSSARILARSL 59 (584)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
No 354
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=87.99 E-value=2.8 Score=60.45 Aligned_cols=113 Identities=18% Similarity=0.165 Sum_probs=68.6
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeE
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKV 96 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v 96 (1396)
+.+.+-|.+++..++.. + .||.++.|+|||.+.-.++. +.+ ..+.+++.++||- ..+..+..-++...
T Consensus 428 ~~Ls~~Q~~Av~~il~s~~~v~ii~G~aGTGKTt~l~~l~~-~~~----~~G~~V~~lAPTg----rAA~~L~e~~g~~A 498 (1960)
T TIGR02760 428 FALSPSNKDAVSTLFTSTKRFIIINGFGGTGSTEIAQLLLH-LAS----EQGYEIQIITAGS----LSAQELRQKIPRLA 498 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCCeEEEEECCCCCHHHHHHHHHH-HHH----hcCCeEEEEeCCH----HHHHHHHHHhcchh
Confidence 35788999999999875 3 88999999999987544433 222 2467899999994 34445554433221
Q ss_pred EEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 97 GKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 97 ~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
.. ...|...+... .-..|.+.|++ ....+..-++||+|||-.+..
T Consensus 499 ~T-----------i~~~l~~l~~~-~~~~tv~~fl~----~~~~l~~~~vlIVDEAsMl~~ 543 (1960)
T TIGR02760 499 ST-----------FITWVKNLFND-DQDHTVQGLLD----KSSPFSNKDIFVVDEANKLSN 543 (1960)
T ss_pred hh-----------HHHHHHhhccc-ccchhHHHhhc----ccCCCCCCCEEEEECCCCCCH
Confidence 11 12233222111 12334444441 223345678999999998864
No 355
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=87.91 E-value=1.5 Score=52.33 Aligned_cols=22 Identities=36% Similarity=0.376 Sum_probs=18.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++.+|.|+|||.+|-.+++.+
T Consensus 41 ~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 41 WLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred EEEecCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777655
No 356
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=87.88 E-value=3.5 Score=52.98 Aligned_cols=115 Identities=14% Similarity=0.075 Sum_probs=61.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCcc--cHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKVV--LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~~--Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~ 114 (1396)
+.+++|||+|||.+...+...+.. ..+++++.++. .+-- -++| ...+.+..++.+
T Consensus 188 i~lVGpnGvGKTTTiaKLA~~~~~---~~G~kkV~lit~Dt~RigA~eQ-L~~~a~~~gvpv------------------ 245 (767)
T PRK14723 188 LALVGPTGVGKTTTTAKLAARCVA---REGADQLALLTTDSFRIGALEQ-LRIYGRILGVPV------------------ 245 (767)
T ss_pred EEEECCCCCcHHHHHHHHHhhHHH---HcCCCeEEEecCcccchHHHHH-HHHHHHhCCCCc------------------
Confidence 559999999999887776654421 11233444443 2211 2233 233333222211
Q ss_pred HhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 115 EEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 115 ~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.++.+|+.+.+.+. .+.+.++||+|=+=+...+......+..+. ....+.-.+|.|+||-
T Consensus 246 -------~~~~~~~~l~~al~----~~~~~D~VLIDTAGRs~~d~~l~eel~~l~-----~~~~p~e~~LVLsAt~ 305 (767)
T PRK14723 246 -------HAVKDAADLRFALA----ALGDKHLVLIDTVGMSQRDRNVSEQIAMLC-----GVGRPVRRLLLLNAAS 305 (767)
T ss_pred -------cccCCHHHHHHHHH----HhcCCCEEEEeCCCCCccCHHHHHHHHHHh-----ccCCCCeEEEEECCCC
Confidence 22346777766665 234678999998877655432222222222 1122334578888885
No 357
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=87.88 E-value=2.5 Score=52.82 Aligned_cols=37 Identities=27% Similarity=0.269 Sum_probs=26.5
Q ss_pred hHHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
++.-.+.+..++.+ . .|+++|.|+|||..|..+.+.+
T Consensus 21 Qe~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L 62 (605)
T PRK05896 21 QELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAI 62 (605)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 44444555555543 2 7899999999999998777765
No 358
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=87.85 E-value=1.5 Score=55.44 Aligned_cols=78 Identities=12% Similarity=0.143 Sum_probs=57.7
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhc----CCeeEEEEecccccc
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRR----GLVNVIVATSILEEG 461 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~----g~~nvLVaTsvleeG 461 (1396)
.+.+++|-+.+......++..|.... . -...+.|.. ..+...+++|+. |+-.||++|+.+-||
T Consensus 469 ~~G~~lvLfTS~~~~~~~~~~l~~~l----~-~~~l~qg~~--------~~~~~l~~~f~~~~~~~~~~vL~gt~sfweG 535 (636)
T TIGR03117 469 AQGGTLVLTTAFSHISAIGQLVELGI----P-AEIVIQSEK--------NRLASAEQQFLALYANGIQPVLIAAGGAWTG 535 (636)
T ss_pred cCCCEEEEechHHHHHHHHHHHHhhc----C-CCEEEeCCC--------ccHHHHHHHHHHhhcCCCCcEEEeCCccccc
Confidence 55688888888888888888887421 1 234455542 135678999997 478999999999999
Q ss_pred cCC----------CcccEEEEeCCC
Q 000607 462 LDV----------QSCNLVIMFDPS 476 (1396)
Q Consensus 462 iDI----------p~~~lVI~fD~p 476 (1396)
||+ ..|.+||..-+|
T Consensus 536 vDv~~~~~~p~~G~~Ls~ViI~kLP 560 (636)
T TIGR03117 536 IDLTHKPVSPDKDNLLTDLIITCAP 560 (636)
T ss_pred cccCCccCCCCCCCcccEEEEEeCC
Confidence 999 238999876666
No 359
>CHL00095 clpC Clp protease ATP binding subunit
Probab=87.82 E-value=3.7 Score=54.65 Aligned_cols=37 Identities=35% Similarity=0.397 Sum_probs=27.2
Q ss_pred hHHHHHHHHHHhc----CCEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALK----QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~----~n~Iv~~~TGsGKT~iailli~~l 59 (1396)
|+-+.+-+-.++. .|.|+++|+|+|||.++-.+...+
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 5555555555543 389999999999999987776655
No 360
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=87.75 E-value=2.3 Score=44.68 Aligned_cols=91 Identities=18% Similarity=0.228 Sum_probs=52.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEM 117 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~ 117 (1396)
.++++|++||||..-+-.++.+.. .++++++..|...= -+.++.+....+.+
T Consensus 7 ~~i~gpM~SGKT~eLl~r~~~~~~-----~g~~v~vfkp~iD~------------R~~~~~V~Sr~G~~----------- 58 (201)
T COG1435 7 EFIYGPMFSGKTEELLRRARRYKE-----AGMKVLVFKPAIDT------------RYGVGKVSSRIGLS----------- 58 (201)
T ss_pred EEEEccCcCcchHHHHHHHHHHHH-----cCCeEEEEeccccc------------ccccceeeeccCCc-----------
Confidence 468999999999965444444322 46778888886322 11222233222222
Q ss_pred ccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 118 SKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 118 ~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
..-++|-.+.-+.+.+....-.. .++.+.+|||+-+...
T Consensus 59 -~~A~~i~~~~~i~~~i~~~~~~~-~~~~v~IDEaQF~~~~ 97 (201)
T COG1435 59 -SEAVVIPSDTDIFDEIAALHEKP-PVDCVLIDEAQFFDEE 97 (201)
T ss_pred -ccceecCChHHHHHHHHhcccCC-CcCEEEEehhHhCCHH
Confidence 22355556655655554322111 2889999999988764
No 361
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=87.58 E-value=1.2 Score=47.41 Aligned_cols=48 Identities=17% Similarity=0.109 Sum_probs=34.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
++|.+++|+|||..+..++...+. .+.+++++... +-..+..+.++.+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~-----~g~~v~~~s~e-~~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLA-----RGEPGLYVTLE-ESPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH-----CCCcEEEEECC-CCHHHHHHHHHHc
Confidence 689999999999999877665542 35668877654 5556666666554
No 362
>PHA00729 NTP-binding motif containing protein
Probab=87.42 E-value=2.6 Score=46.04 Aligned_cols=53 Identities=23% Similarity=0.250 Sum_probs=33.5
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhc--------CCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLR--------KPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~--------~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
|+++.+++|+|||..|..+...+..... ...++.++|+ +...|.......+..
T Consensus 19 nIlItG~pGvGKT~LA~aLa~~l~~~l~~l~~~~~~~d~~~~~~fi-d~~~Ll~~L~~a~~~ 79 (226)
T PHA00729 19 SAVIFGKQGSGKTTYALKVARDVFWKLNNLSTKDDAWQYVQNSYFF-ELPDALEKIQDAIDN 79 (226)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhcccccchhhHHhcCCcEEEE-EHHHHHHHHHHHHhc
Confidence 7999999999999999988776542110 0123445554 444666665554443
No 363
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=87.25 E-value=1.2 Score=50.50 Aligned_cols=54 Identities=22% Similarity=0.147 Sum_probs=37.1
Q ss_pred chHHHHHHHHHHhc---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALK---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+.|.+.++.++. +.++++++||||||...-.++..+ . ...++++.+-..+++
T Consensus 64 ~~~~~~~~l~~~~~~~~GlilisG~tGSGKTT~l~all~~i----~-~~~~~iitiEdp~E~ 120 (264)
T cd01129 64 LKPENLEIFRKLLEKPHGIILVTGPTGSGKTTTLYSALSEL----N-TPEKNIITVEDPVEY 120 (264)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEECCCCCcHHHHHHHHHhhh----C-CCCCeEEEECCCcee
Confidence 46678888887775 258899999999998865555543 1 234566666665554
No 364
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=87.14 E-value=2.2 Score=51.48 Aligned_cols=21 Identities=29% Similarity=0.529 Sum_probs=17.7
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||.+|-.+..
T Consensus 167 gvLL~GppGtGKT~lAkaia~ 187 (389)
T PRK03992 167 GVLLYGPPGTGKTLLAKAVAH 187 (389)
T ss_pred ceEEECCCCCChHHHHHHHHH
Confidence 599999999999998765544
No 365
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=87.14 E-value=7.3 Score=45.90 Aligned_cols=90 Identities=16% Similarity=0.149 Sum_probs=49.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CCc-c-cHHHHHHHHHHhcCCeEEEEeCCCCcccCCccch
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PKV-V-LVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt~-~-Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.+++++|+|+|||.++..+...+.. .++++.++. .+- . -+.||....+. .++.+
T Consensus 208 ii~lvGptGvGKTTt~akLA~~l~~-----~g~~V~lItaDtyR~gAveQLk~yae~-lgvpv----------------- 264 (407)
T PRK12726 208 IISLIGQTGVGKTTTLVKLGWQLLK-----QNRTVGFITTDTFRSGAVEQFQGYADK-LDVEL----------------- 264 (407)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHH-----cCCeEEEEeCCccCccHHHHHHHHhhc-CCCCE-----------------
Confidence 3679999999999988776654422 234454444 332 1 23454433332 22211
Q ss_pred HHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC
Q 000607 114 KEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK 158 (1396)
Q Consensus 114 ~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~ 158 (1396)
.++.+|+-+.+.+.... ..++.++||+|=+=+...+
T Consensus 265 --------~~~~dp~dL~~al~~l~-~~~~~D~VLIDTAGr~~~d 300 (407)
T PRK12726 265 --------IVATSPAELEEAVQYMT-YVNCVDHILIDTVGRNYLA 300 (407)
T ss_pred --------EecCCHHHHHHHHHHHH-hcCCCCEEEEECCCCCccC
Confidence 12245666665554211 1246799999987665433
No 366
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=87.00 E-value=1.5 Score=49.01 Aligned_cols=36 Identities=19% Similarity=0.190 Sum_probs=26.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
++|++++|+|||..+.-++...+.. .+..++|+..-
T Consensus 16 ~lI~G~~G~GKT~~~~~~~~~~~~~----~g~~vly~s~E 51 (242)
T cd00984 16 IIIAARPSMGKTAFALNIAENIAKK----QGKPVLFFSLE 51 (242)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh----CCCceEEEeCC
Confidence 7799999999999888766655431 25567887743
No 367
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=86.94 E-value=2 Score=47.66 Aligned_cols=22 Identities=27% Similarity=0.454 Sum_probs=18.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+++.+|+|.|||..|-.+..++
T Consensus 55 vLl~GPPGlGKTTLA~IIA~Em 76 (332)
T COG2255 55 VLLFGPPGLGKTTLAHIIANEL 76 (332)
T ss_pred EEeeCCCCCcHHHHHHHHHHHh
Confidence 9999999999999887655544
No 368
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=86.91 E-value=2.4 Score=45.58 Aligned_cols=44 Identities=20% Similarity=0.218 Sum_probs=23.2
Q ss_pred ceeEEEEeccccccCCCcHH-----HHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 143 MIKVLILDECHHARGKHQYA-----CIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 143 ~i~llI~DEaH~~~~~~~~~-----~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
.-++||+||||...+..... .++ .++.. -....--++++|=.|.
T Consensus 79 ~~~liviDEa~~~~~~r~~~~~~~~~~~-~~l~~----hRh~g~diiliTQ~~~ 127 (193)
T PF05707_consen 79 KGSLIVIDEAQNFFPSRSWKGKKVPEII-EFLAQ----HRHYGWDIILITQSPS 127 (193)
T ss_dssp TT-EEEETTGGGTSB---T-T----HHH-HGGGG----CCCTT-EEEEEES-GG
T ss_pred CCcEEEEECChhhcCCCccccccchHHH-HHHHH----hCcCCcEEEEEeCCHH
Confidence 55899999999988654442 233 33311 1223346888887773
No 369
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=86.91 E-value=4.1 Score=47.81 Aligned_cols=37 Identities=16% Similarity=0.158 Sum_probs=28.2
Q ss_pred hHHHHHHHHHHhc--C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALK--Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~--~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|||....+.... + -.++.+|.|.|||..|..+.+.+
T Consensus 3 yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 3 YPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 5777777776654 2 37799999999999988777655
No 370
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.32 E-value=3.2 Score=52.00 Aligned_cols=22 Identities=32% Similarity=0.360 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 ~Lf~Gp~G~GKTt~A~~lAk~l 62 (527)
T PRK14969 41 YLFTGTRGVGKTTLARILAKSL 62 (527)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999988777655
No 371
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=86.28 E-value=4.9 Score=46.66 Aligned_cols=39 Identities=18% Similarity=0.243 Sum_probs=30.5
Q ss_pred cchHHHHHHHHHHhc----CC----EEEEeCCCchHHHHHHHHHHHH
Q 000607 21 FARNYQLEALENALK----QN----TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~----~n----~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++|+|..+.+.... ++ .++.+|.|+||+..|..+++.+
T Consensus 4 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 4 AFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred cccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 367888888776654 22 8899999999999988877765
No 372
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=86.23 E-value=2.6 Score=58.41 Aligned_cols=65 Identities=20% Similarity=0.077 Sum_probs=45.6
Q ss_pred cchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 21 FARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
.+.+-|.+++..++.. -++|.+..|+|||.+.-.++..+.. +....+..++.++|| ...+..++.
T Consensus 835 ~Lt~~Qr~Av~~iLts~dr~~~IqG~AGTGKTT~l~~i~~~~~~-l~e~~g~~V~glAPT----gkAa~~L~e 902 (1623)
T PRK14712 835 KLTSGQRAATRMILETSDRFTVVQGYAGVGKTTQFRAVMSAVNM-LPESERPRVVGLGPT----HRAVGEMRS 902 (1623)
T ss_pred ccCHHHHHHHHHHHhCCCceEEEEeCCCCCHHHHHHHHHHHHHH-HhhccCceEEEEech----HHHHHHHHH
Confidence 5789999999999964 3889999999999985444443322 212345678899999 444455543
No 373
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=86.11 E-value=4 Score=50.90 Aligned_cols=22 Identities=23% Similarity=0.304 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 41 ~Lf~Gp~GvGKTTlAr~lAk~L 62 (546)
T PRK14957 41 YLFTGTRGVGKTTLGRLLAKCL 62 (546)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999988777655
No 374
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=86.10 E-value=4.5 Score=51.31 Aligned_cols=22 Identities=36% Similarity=0.404 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+|+++|.|+|||.+|..+.+.+
T Consensus 41 ~Lf~GP~GvGKTTlAriLAk~L 62 (709)
T PRK08691 41 YLLTGTRGVGKTTIARILAKSL 62 (709)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7999999999999998877765
No 375
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=86.00 E-value=2.7 Score=55.14 Aligned_cols=36 Identities=33% Similarity=0.309 Sum_probs=25.6
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.-.+.|..+++. + .|++++.|+|||.+|..+.+.+
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L 61 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSL 61 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 3334445555543 3 6899999999999998877765
No 376
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=85.99 E-value=4.1 Score=49.49 Aligned_cols=122 Identities=16% Similarity=0.123 Sum_probs=83.4
Q ss_pred CCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcE
Q 000607 43 ETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEV 122 (1396)
Q Consensus 43 ~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~V 122 (1396)
.+++||+-..++.++.+.. .+-.+.++|-|-+.+=+.|.+.++..+-++++..++|+......+...-.-......|
T Consensus 365 lvF~gse~~K~lA~rq~v~---~g~~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~g~Iwv 441 (593)
T KOG0344|consen 365 LVFCGSEKGKLLALRQLVA---SGFKPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRIGKIWV 441 (593)
T ss_pred heeeecchhHHHHHHHHHh---ccCCCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhccCeeE
Confidence 3689999999888887644 3344557777888888999999998777999999999843322111111222236788
Q ss_pred EEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 123 LVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 123 iV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
+|||- .+.+| +.+..+++||-+..-... ..|. +|| |.||++.+..
T Consensus 442 LicTd-----ll~RG-iDf~gvn~VInyD~p~s~---------~syi-----------hrI-GRtgRag~~g 486 (593)
T KOG0344|consen 442 LICTD-----LLARG-IDFKGVNLVINYDFPQSD---------LSYI-----------HRI-GRTGRAGRSG 486 (593)
T ss_pred EEehh-----hhhcc-ccccCcceEEecCCCchh---------HHHH-----------HHh-hccCCCCCCc
Confidence 99985 45555 788999999986654332 2233 345 9999987743
No 377
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=85.93 E-value=12 Score=45.79 Aligned_cols=175 Identities=13% Similarity=0.075 Sum_probs=95.3
Q ss_pred CCcccchHHHHHHHHHHhc----C-------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHH
Q 000607 17 DTLPFARNYQLEALENALK----Q-------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQA 85 (1396)
Q Consensus 17 ~~~~~~r~yQ~e~~~~~l~----~-------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~ 85 (1396)
.....+-|||.-++-.+.. + -.+|.+|-|-|||..+..++....-... ..+..+.+++|+..-+.+-.
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~-~~~~~~~i~A~s~~qa~~~F 135 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNW-RSGAGIYILAPSVEQAANSF 135 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhh-hcCCcEEEEeccHHHHHHhh
Confidence 3445589999999988873 1 2789999999998877654433222222 46677999999987777766
Q ss_pred HHHHHhcCCeEEEEeCCCCcccCCccchHHhhccCcE-EEec-HHHHHHhHh--hcCccccceeEEEEeccccccCC-Cc
Q 000607 86 EAIKMHTDLKVGKYWGDMGVDFWDGATWKEEMSKHEV-LVMT-PQILLDGLR--LSYFKLNMIKVLILDECHHARGK-HQ 160 (1396)
Q Consensus 86 ~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~~~~~~V-iV~T-~q~L~~~l~--~~~~~l~~i~llI~DEaH~~~~~-~~ 160 (1396)
..++...-..- .+.- ......+.+ ++.. -...+..+. .+...-.+..+.||||-|...+. .-
T Consensus 136 ~~ar~mv~~~~-~l~~------------~~~~q~~s~~i~~~~~~s~ik~~aa~~~~~Dg~~~~~~I~DEih~f~~~~~~ 202 (546)
T COG4626 136 NPARDMVKRDD-DLRD------------LCNVQTHSRTITHRKTDSTIKAVAADPNTVDGLNSVGAIIDELHLFGKQEDM 202 (546)
T ss_pred HHHHHHHHhCc-chhh------------hhccccceeEEEecccceeeeeeccCCCcccCCCcceEEEehhhhhcCHHHH
Confidence 66664321000 0000 000001111 1111 011111122 12344456789999999999875 23
Q ss_pred HHHHHHHHHHhhccCCCCCCCeEEEEeccCCCCCCCCchhhHHHHHHHHHHHhCCeE
Q 000607 161 YACIMTEFYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKV 217 (1396)
Q Consensus 161 ~~~im~~f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~~~i 217 (1396)
|+.+..+. ...+.+.+++.|-+.....+ -+.+........++..+
T Consensus 203 ~~~~~~g~-------~ar~~~l~~~ITT~g~~~~g-----~~~q~~~y~k~vl~g~~ 247 (546)
T COG4626 203 YSEAKGGL-------GARPEGLVVYITTSGDPPAG-----VFKQKLQYAKDVLDGKI 247 (546)
T ss_pred HHHHHhhh-------ccCcCceEEEEecCCCCCcc-----HHHHHHHHHHHHhcCCc
Confidence 33332222 23456778888764433322 23445556666666543
No 378
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=85.93 E-value=10 Score=43.20 Aligned_cols=52 Identities=13% Similarity=0.038 Sum_probs=30.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDL 94 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~ 94 (1396)
+++++++|+|||.++..+...+.. .+++++++. .+ +.-+.+|...+....++
T Consensus 75 i~l~G~~G~GKTTt~akLA~~l~~-----~g~~V~li~~D~~r~~a~~ql~~~~~~~~i 128 (272)
T TIGR00064 75 ILFVGVNGVGKTTTIAKLANKLKK-----QGKSVLLAAGDTFRAAAIEQLEEWAKRLGV 128 (272)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHh-----cCCEEEEEeCCCCCHHHHHHHHHHHHhCCe
Confidence 558899999999998887765532 345565554 33 33233344434343443
No 379
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=85.85 E-value=5.8 Score=49.79 Aligned_cols=54 Identities=15% Similarity=0.112 Sum_probs=41.0
Q ss_pred cCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 35 KQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 35 ~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
++=.++..|=|.|||.+..+++-+++.. .+.++++.+|...-+.+..+.++..+
T Consensus 187 q~~tV~taPRqrGKS~iVgi~l~~La~f----~Gi~IlvTAH~~~ts~evF~rv~~~l 240 (752)
T PHA03333 187 KCYTAATVPRRCGKTTIMAIILAAMISF----LEIDIVVQAQRKTMCLTLYNRVETVV 240 (752)
T ss_pred hcceEEEeccCCCcHHHHHHHHHHHHHh----cCCeEEEECCChhhHHHHHHHHHHHH
Confidence 3458899999999999988766665432 35789999999888888777666543
No 380
>PF11469 Ribonucleas_3_2: Ribonuclease III; InterPro: IPR021568 This archaeal family of proteins has no known function. ; PDB: 1ZTD_A.
Probab=85.81 E-value=5.8 Score=36.39 Aligned_cols=80 Identities=21% Similarity=0.191 Sum_probs=54.6
Q ss_pred hhhhhhhhHHHHHHHHHHH--HhcCCCCcchhhHHHhhccccHHHHHHHHhcCCcccccccccCCCCccCCCCCCCCCcc
Q 000607 998 SLETLGDSFLKYAASQQLF--KTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTESFDPKMWIIPGDNSGSYEL 1075 (1396)
Q Consensus 998 rLE~LGDs~Lk~~~s~~l~--~~~p~~~eg~ls~~r~~~v~n~~L~~~a~~~gl~~~i~~~~f~~~~w~~~~~~~~~~~~ 1075 (1396)
-|.-+|||...|+.|.-|- ..+|.- .-|-|..|+..-...||.+.+. |.
T Consensus 2 ~Lak~GDSLvNfl~SlALse~lG~Ptg----------~rVPnaSLaiAl~~a~L~~~~~----------PR--------- 52 (120)
T PF11469_consen 2 GLAKFGDSLVNFLFSLALSEYLGRPTG----------DRVPNASLAIALELAGLSHLLP----------PR--------- 52 (120)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTS-----------------HHHHHHHHHHTTGGGCS------------C---------
T ss_pred cHHHHhHHHHHHHHHHHHHHHhCCCCC----------CCCCChHHHHHHHHHhhhhhCc----------cc---------
Confidence 3678999999999998874 445542 3478999998888888887775 11
Q ss_pred CcccccCCcccccccceecccchhhHHHHHHHHHHhhcCCh--hHHHHHHh
Q 000607 1076 NDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLSTGGE--NVGLIFLD 1124 (1396)
Q Consensus 1076 ~~~~~~~~~~~~~~~~~~~~~k~~aD~~EAliGA~~~~~G~--~~a~~~~~ 1124 (1396)
+....-.|..||+|.-+|+.|-+ +.|..+++
T Consensus 53 ------------------~dkh~kGd~aEA~iAyAWLeg~it~eEaveil~ 85 (120)
T PF11469_consen 53 ------------------TDKHGKGDIAEALIAYAWLEGKITIEEAVEILK 85 (120)
T ss_dssp ------------------GGCCGHHHHHHHHHHHHHHTTSS-HHHHHHHHH
T ss_pred ------------------ccccCccHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 12345589999999999999875 45555554
No 381
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=85.71 E-value=2.6 Score=49.56 Aligned_cols=37 Identities=19% Similarity=0.309 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHhc---------CCEEEEeCCCchHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK---------QNTIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---------~n~Iv~~~TGsGKT~iailli~~ 58 (1396)
-++-..+.+..++. +++++++|+|+|||..|..+...
T Consensus 29 G~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~ 74 (328)
T PRK00080 29 GQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANE 74 (328)
T ss_pred CcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHH
Confidence 45555555544432 25999999999999998765543
No 382
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=85.64 E-value=3.1 Score=45.87 Aligned_cols=30 Identities=33% Similarity=0.540 Sum_probs=19.9
Q ss_pred hHHHHHHHHHHhcC----CEEEEeCCCchHHHHH
Q 000607 23 RNYQLEALENALKQ----NTIVFLETGSGKTLIA 52 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~ia 52 (1396)
|.-..+.+..++.+ .++|.+|-|+|||...
T Consensus 4 R~~el~~l~~~l~~~~~~~~~l~G~rg~GKTsLl 37 (234)
T PF01637_consen 4 REKELEKLKELLESGPSQHILLYGPRGSGKTSLL 37 (234)
T ss_dssp -HHHHHHHHHCHHH--SSEEEEEESTTSSHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcEEEEEcCCcCCHHHHH
Confidence 44444555555542 3889999999999863
No 383
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=85.57 E-value=3.3 Score=52.47 Aligned_cols=22 Identities=32% Similarity=0.312 Sum_probs=19.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||..|..+.+.+
T Consensus 49 ~L~~Gp~GvGKTt~Ar~lAk~L 70 (598)
T PRK09111 49 FMLTGVRGVGKTTTARILARAL 70 (598)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 8899999999999998887765
No 384
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.44 E-value=3.4 Score=52.61 Aligned_cols=22 Identities=32% Similarity=0.311 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+++.+
T Consensus 41 ~Lf~Gp~G~GKttlA~~lAk~L 62 (620)
T PRK14948 41 YLFTGPRGTGKTSSARILAKSL 62 (620)
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 6899999999999998877765
No 385
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=85.32 E-value=3.5 Score=52.32 Aligned_cols=35 Identities=26% Similarity=0.276 Sum_probs=24.7
Q ss_pred HHHHHHHHHhc-C---C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 25 YQLEALENALK-Q---N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 25 yQ~e~~~~~l~-~---n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
...+.+..+++ + + .|+++|.|+|||.+|..+.+.+
T Consensus 23 ~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l 62 (576)
T PRK14965 23 HVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKAL 62 (576)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhh
Confidence 33444555544 3 2 6899999999999998777765
No 386
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=85.31 E-value=6.9 Score=47.00 Aligned_cols=22 Identities=18% Similarity=0.208 Sum_probs=19.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+.+|.|+|||..|..+.+.+
T Consensus 39 ~Lf~Gp~G~GKt~lA~~lA~~l 60 (394)
T PRK07940 39 WLFTGPPGSGRSVAARAFAAAL 60 (394)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 7899999999999988776654
No 387
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=85.26 E-value=2.4 Score=48.29 Aligned_cols=29 Identities=31% Similarity=0.501 Sum_probs=21.2
Q ss_pred HHHHHhcCC----EEEEeCCCchHHHHHHHHHH
Q 000607 29 ALENALKQN----TIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 29 ~~~~~l~~n----~Iv~~~TGsGKT~iailli~ 57 (1396)
++..+++.| +|+++|.|+|||.+|-+++.
T Consensus 152 llrs~ieq~~ipSmIlWGppG~GKTtlArlia~ 184 (554)
T KOG2028|consen 152 LLRSLIEQNRIPSMILWGPPGTGKTTLARLIAS 184 (554)
T ss_pred HHHHHHHcCCCCceEEecCCCCchHHHHHHHHh
Confidence 344555543 89999999999998765543
No 388
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=85.25 E-value=5.6 Score=41.81 Aligned_cols=24 Identities=25% Similarity=0.131 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
+++.+++|+|||..+..++..+.+
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~ 26 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKK 26 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 578999999999998877766543
No 389
>TIGR03600 phage_DnaB phage replicative helicase, DnaB family, HK022 subfamily. Members of this family are phage (or prophage-region) homologs of the bacterial homohexameric replicative helicase DnaB. Some phage may rely on host DnaB, while others encode their own verions. This model describes the largest phage-specific clade among the close homologs of DnaB, but there are, or course, other DnaB homologs from phage that fall outside the scope of this model.
Probab=85.24 E-value=2.2 Score=52.16 Aligned_cols=53 Identities=15% Similarity=0.201 Sum_probs=33.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~ 95 (1396)
++|++++|+|||..++.++..++. ..+..++|+..- .-..|....+ ....++.
T Consensus 197 iviag~pg~GKT~~al~ia~~~a~----~~g~~v~~fSlE-m~~~~l~~Rl~~~~~~v~ 250 (421)
T TIGR03600 197 IVIGARPSMGKTTLALNIAENVAL----REGKPVLFFSLE-MSAEQLGERLLASKSGIN 250 (421)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHH----hCCCcEEEEECC-CCHHHHHHHHHHHHcCCC
Confidence 789999999999999887766542 134557777633 2334444433 3334443
No 390
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=85.12 E-value=2.7 Score=48.95 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.4
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||..|..+..
T Consensus 32 ~~ll~Gp~G~GKT~la~~ia~ 52 (305)
T TIGR00635 32 HLLLYGPPGLGKTTLAHIIAN 52 (305)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 489999999999998765544
No 391
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=85.00 E-value=1.7 Score=52.45 Aligned_cols=38 Identities=32% Similarity=0.327 Sum_probs=28.9
Q ss_pred chHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l 59 (1396)
.-++|.+.+..++++ + +++.+|||||||..--.++.++
T Consensus 242 ~~~~~~~~~~~~~~~p~GliLvTGPTGSGKTTTLY~~L~~l 282 (500)
T COG2804 242 MSPFQLARLLRLLNRPQGLILVTGPTGSGKTTTLYAALSEL 282 (500)
T ss_pred CCHHHHHHHHHHHhCCCeEEEEeCCCCCCHHHHHHHHHHHh
Confidence 367888888888886 3 7799999999998754444433
No 392
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=84.96 E-value=1.2 Score=50.79 Aligned_cols=52 Identities=27% Similarity=0.192 Sum_probs=34.0
Q ss_pred HHHHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 24 NYQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 24 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
+...+.+..+.+ +|++++++||||||...-.++..+ .. ...+++.+-.+.++
T Consensus 114 ~~~~~~l~~~v~~~~~ili~G~tGSGKTT~l~all~~i----~~-~~~~iv~iEd~~E~ 167 (270)
T PF00437_consen 114 EEIAEFLRSAVRGRGNILISGPTGSGKTTLLNALLEEI----PP-EDERIVTIEDPPEL 167 (270)
T ss_dssp HHHHHHHHHCHHTTEEEEEEESTTSSHHHHHHHHHHHC----HT-TTSEEEEEESSS-S
T ss_pred HHHHHHHhhccccceEEEEECCCccccchHHHHHhhhc----cc-cccceEEeccccce
Confidence 344455555533 489999999999998865555433 11 23678888877766
No 393
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=84.91 E-value=3.2 Score=53.05 Aligned_cols=36 Identities=22% Similarity=0.347 Sum_probs=25.2
Q ss_pred HHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 24 NYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 24 ~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
+...+.+..+++. + .|++||.|+|||.+|-.+.+.+
T Consensus 24 e~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~L 64 (725)
T PRK07133 24 DHIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANAL 64 (725)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHh
Confidence 3334455555543 2 6899999999999987776654
No 394
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=84.86 E-value=12 Score=43.53 Aligned_cols=126 Identities=17% Similarity=0.148 Sum_probs=62.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-CC-cccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-PK-VVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-Pt-~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+.+++|+|+|||.++..+...+. ..+++++++. .+ +.-+.+|........++.+. ....+.+
T Consensus 117 i~lvGpnGsGKTTt~~kLA~~l~-----~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~--~~~~~~d--------- 180 (318)
T PRK10416 117 ILVVGVNGVGKTTTIGKLAHKYK-----AQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVI--AQKEGAD--------- 180 (318)
T ss_pred EEEECCCCCcHHHHHHHHHHHHH-----hcCCeEEEEecCccchhhHHHHHHHHHHcCceEE--EeCCCCC---------
Confidence 55899999999999877666542 2344565554 43 33333333333333343332 1111111
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccC-CCCCCCeEEEEeccCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET-GDSNLPRIFGMTASPI 191 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~-~~~~~p~ilgLTATp~ 191 (1396)
+ .....+.+... ...++++||+|=+-+...+.....-++.+....-.. ...+...+|-+.||-.
T Consensus 181 ----p------a~~v~~~l~~~--~~~~~D~ViIDTaGr~~~~~~l~~eL~~~~~v~~~~~~~~p~~~~LVl~a~~g 245 (318)
T PRK10416 181 ----P------ASVAFDAIQAA--KARGIDVLIIDTAGRLHNKTNLMEELKKIKRVIKKADPDAPHEVLLVLDATTG 245 (318)
T ss_pred ----H------HHHHHHHHHHH--HhCCCCEEEEeCCCCCcCCHHHHHHHHHHHHHHhhhcCCCCceEEEEEECCCC
Confidence 0 01112222211 125789999999988765433333334433211000 1122235788999853
No 395
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=84.76 E-value=4.6 Score=50.42 Aligned_cols=126 Identities=13% Similarity=0.134 Sum_probs=79.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcC-----CeEEEEeCCCCcccCCcc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTD-----LKVGKYWGDMGVDFWDGA 111 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-----~~v~~~~G~~~~~~~~~~ 111 (1396)
-+++..|==.|||.+.+..|..++. .-.+.++++.+|...-+....++++..+. ..+..+.|+ ..
T Consensus 256 ~tVflVPRR~GKTwivv~iI~~ll~---s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I------ 325 (738)
T PHA03368 256 ATVFLVPRRHGKTWFLVPLIALALA---TFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TI------ 325 (738)
T ss_pred ceEEEecccCCchhhHHHHHHHHHH---hCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EE------
Confidence 4889999999999987744432221 22578899999999999998888876432 123223332 11
Q ss_pred chHHhhc-c--CcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEec
Q 000607 112 TWKEEMS-K--HEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTA 188 (1396)
Q Consensus 112 ~~~~~~~-~--~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTA 188 (1396)
...+. + ..|.+.|. -..+..+-..++++|+|||+.+..+ .+..++ .+. ....|+++.+|-
T Consensus 326 --~i~f~nG~kstI~FaSa------rntNsiRGqtfDLLIVDEAqFIk~~-al~~il-p~l-------~~~n~k~I~ISS 388 (738)
T PHA03368 326 --SFSFPDGSRSTIVFASS------HNTNGIRGQDFNLLFVDEANFIRPD-AVQTIM-GFL-------NQTNCKIIFVSS 388 (738)
T ss_pred --EEEecCCCccEEEEEec------cCCCCccCCcccEEEEechhhCCHH-HHHHHH-HHH-------hccCccEEEEec
Confidence 00111 1 25555533 1223455568999999999998864 566655 443 123688888875
Q ss_pred c
Q 000607 189 S 189 (1396)
Q Consensus 189 T 189 (1396)
|
T Consensus 389 ~ 389 (738)
T PHA03368 389 T 389 (738)
T ss_pred C
Confidence 5
No 396
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=84.63 E-value=5.9 Score=45.98 Aligned_cols=38 Identities=11% Similarity=0.137 Sum_probs=28.7
Q ss_pred chHHHHHHHHHHhc----C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK----Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~----~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.|+|....+...+ + -.++.+|.|.||+..|..+++.+
T Consensus 4 ~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 4 DYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 56777776665553 2 28899999999999988777655
No 397
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=84.59 E-value=2.5 Score=54.55 Aligned_cols=79 Identities=20% Similarity=0.321 Sum_probs=66.0
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEecc-cccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATSI-LEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTsv-leeGiDI 464 (1396)
.+.+++|-++++.-|...++.++++.+. .++++..++|+. +.+++.++++..++|+.+|+|+|.. +.+++++
T Consensus 283 ~g~qvlilaPT~~LA~Q~~~~~~~l~~~-~gi~v~lltg~~------~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~~~~ 355 (630)
T TIGR00643 283 AGYQVALMAPTEILAEQHYNSLRNLLAP-LGIEVALLTGSL------KGKRRKELLETIASGQIHLVVGTHALIQEKVEF 355 (630)
T ss_pred cCCcEEEECCHHHHHHHHHHHHHHHhcc-cCcEEEEEecCC------CHHHHHHHHHHHhCCCCCEEEecHHHHhccccc
Confidence 4678999999999999999888876443 378999999974 7788899999999999999999964 5567777
Q ss_pred CcccEEE
Q 000607 465 QSCNLVI 471 (1396)
Q Consensus 465 p~~~lVI 471 (1396)
.++.+||
T Consensus 356 ~~l~lvV 362 (630)
T TIGR00643 356 KRLALVI 362 (630)
T ss_pred cccceEE
Confidence 7888777
No 398
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=84.46 E-value=1.5 Score=57.71 Aligned_cols=70 Identities=14% Similarity=0.112 Sum_probs=53.9
Q ss_pred cchHHHHHHHHHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc
Q 000607 21 FARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT 92 (1396)
Q Consensus 21 ~~r~yQ~e~~~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~ 92 (1396)
.+.+-|.+++.. ..++++|.+..|||||.+.+..|.++.+.. .-...++++|+-|+.-+....+.+.+..
T Consensus 4 ~Ln~~Q~~av~~-~~g~~lV~AgaGSGKT~~l~~ria~Li~~~-~i~P~~IL~lTFT~kAA~em~~Rl~~~~ 73 (726)
T TIGR01073 4 HLNPEQREAVKT-TEGPLLIMAGAGSGKTRVLTHRIAHLIAEK-NVAPWNILAITFTNKAAREMKERVEKLL 73 (726)
T ss_pred ccCHHHHHHHhC-CCCCEEEEeCCCCCHHHHHHHHHHHHHHcC-CCCHHHeeeeeccHHHHHHHHHHHHHHh
Confidence 378899999975 468999999999999999887776665421 1244679999999888877777777653
No 399
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=84.43 E-value=1.3 Score=54.68 Aligned_cols=60 Identities=23% Similarity=0.366 Sum_probs=52.1
Q ss_pred HHHhcCCeeEEEEecccccccCCCcccEE--------EEeCCCCcHHHHHHhhhcccCCCC----cEEEEEe
Q 000607 442 EEFRRGLVNVIVATSILEEGLDVQSCNLV--------IMFDPSRTVCSFIQSRGRARMQNS----DYLLMVK 501 (1396)
Q Consensus 442 ~~Fr~g~~nvLVaTsvleeGiDIp~~~lV--------I~fD~p~s~~~yiQr~GRA~R~gs----~~i~lv~ 501 (1396)
++|-+|+..|-|-+..++-||-+++-.-| |-..+|||...-||..||++|.++ .|+.+++
T Consensus 851 qrFM~GeK~vAIISEAaSSGiSLQsDrRv~NqRRRvHiTLELPWSADrAIQQFGRTHRSNQVsaPEYvFlIs 922 (1300)
T KOG1513|consen 851 QRFMDGEKLVAIISEAASSGISLQSDRRVQNQRRRVHITLELPWSADRAIQQFGRTHRSNQVSAPEYVFLIS 922 (1300)
T ss_pred hhhccccceeeeeehhhccCceeecchhhhhhhheEEEEEECCcchhHHHHHhcccccccccCCCeEEEEeh
Confidence 46999999999999999999999875544 568999999999999999999874 6888876
No 400
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=84.38 E-value=6.7 Score=47.90 Aligned_cols=97 Identities=18% Similarity=0.246 Sum_probs=74.1
Q ss_pred CCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-----cc
Q 000607 384 GVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-----IL 458 (1396)
Q Consensus 384 ~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-----vl 458 (1396)
...+.++||-++||+-|..+...+.++... ..+++.++.|.. +...|.+-++ ..+.|+|||. .+
T Consensus 162 ~~~~P~vLVL~PTRELA~QV~~~~~~~~~~-~~~~~~cvyGG~------~~~~Q~~~l~----~gvdiviaTPGRl~d~l 230 (519)
T KOG0331|consen 162 RGDGPIVLVLAPTRELAVQVQAEAREFGKS-LRLRSTCVYGGA------PKGPQLRDLE----RGVDVVIATPGRLIDLL 230 (519)
T ss_pred CCCCCeEEEEcCcHHHHHHHHHHHHHHcCC-CCccEEEEeCCC------CccHHHHHHh----cCCcEEEeCChHHHHHH
Confidence 345788999999999999999999988544 357799999986 5555544444 2478999995 68
Q ss_pred ccc-cCCCcccEEEE------eC--CCCcHHHHHHhhhcccC
Q 000607 459 EEG-LDVQSCNLVIM------FD--PSRTVCSFIQSRGRARM 491 (1396)
Q Consensus 459 eeG-iDIp~~~lVI~------fD--~p~s~~~yiQr~GRA~R 491 (1396)
++| +|+..|.++|. +| .-...+..++..+|..|
T Consensus 231 e~g~~~l~~v~ylVLDEADrMldmGFe~qI~~Il~~i~~~~r 272 (519)
T KOG0331|consen 231 EEGSLNLSRVTYLVLDEADRMLDMGFEPQIRKILSQIPRPDR 272 (519)
T ss_pred HcCCccccceeEEEeccHHhhhccccHHHHHHHHHhcCCCcc
Confidence 888 89999999983 33 33456778888888877
No 401
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=84.35 E-value=3.9 Score=46.10 Aligned_cols=110 Identities=21% Similarity=0.219 Sum_probs=59.4
Q ss_pred HHHHHhcCC-----EE-EEeCCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeC
Q 000607 29 ALENALKQN-----TI-VFLETGSGKTLIAIMLLRSYAYLL-RKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWG 101 (1396)
Q Consensus 29 ~~~~~l~~n-----~I-v~~~TGsGKT~iailli~~l~~~~-~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G 101 (1396)
.++.++.|. +. ++++.|+|||..++.+.....-.. ..+.+.+++++--....-.+-...+.+..++
T Consensus 26 ~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~~~~~------- 98 (256)
T PF08423_consen 26 SLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAERFGL------- 98 (256)
T ss_dssp HHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHHHTTS-------
T ss_pred HHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhhcccc-------
Confidence 567777652 33 999999999999876543221001 1224567888876655544333333322111
Q ss_pred CCCcccCCccchHHhhccCcEE-EecHHHHHHhHhhc--CccccceeEEEEeccccc
Q 000607 102 DMGVDFWDGATWKEEMSKHEVL-VMTPQILLDGLRLS--YFKLNMIKVLILDECHHA 155 (1396)
Q Consensus 102 ~~~~~~~~~~~~~~~~~~~~Vi-V~T~q~L~~~l~~~--~~~l~~i~llI~DEaH~~ 155 (1396)
+ .+..+++..|. +.+...+...+.+- .+.-.++.|||+|-.=..
T Consensus 99 ----~------~~~~l~~I~v~~~~~~~~l~~~L~~l~~~l~~~~ikLIVIDSIaal 145 (256)
T PF08423_consen 99 ----D------PEEILDNIFVIRVFDLEELLELLEQLPKLLSESKIKLIVIDSIAAL 145 (256)
T ss_dssp -----------HHHHHHTEEEEE-SSHHHHHHHHHHHHHHHHHSCEEEEEEETSSHH
T ss_pred ----c------cchhhhceeeeecCCHHHHHHHHHHHHhhccccceEEEEecchHHH
Confidence 1 12333333332 34556666655432 233367999999986543
No 402
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=84.15 E-value=4.6 Score=48.05 Aligned_cols=56 Identities=14% Similarity=0.118 Sum_probs=36.6
Q ss_pred HHHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH
Q 000607 28 EALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK 89 (1396)
Q Consensus 28 e~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~ 89 (1396)
.-+++++.+ . +++.+++|+|||..+..++..++. .+.+++++.-. +-..|.....+
T Consensus 69 ~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~-----~g~~VlYvs~E-Es~~qi~~Ra~ 130 (372)
T cd01121 69 EELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAK-----RGGKVLYVSGE-ESPEQIKLRAD 130 (372)
T ss_pred HHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEECC-cCHHHHHHHHH
Confidence 356666654 2 779999999999988776665532 34568887654 33455544443
No 403
>PRK04195 replication factor C large subunit; Provisional
Probab=84.11 E-value=3.4 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.476 Sum_probs=19.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+++++|+|+|||..|-.+++.+
T Consensus 41 ~lLL~GppG~GKTtla~ala~el 63 (482)
T PRK04195 41 ALLLYGPPGVGKTSLAHALANDY 63 (482)
T ss_pred eEEEECCCCCCHHHHHHHHHHHc
Confidence 49999999999999887666543
No 404
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=84.09 E-value=8.3 Score=47.94 Aligned_cols=22 Identities=32% Similarity=0.261 Sum_probs=19.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||.+|-.+++.+
T Consensus 39 yLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 39 YLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred EEEECCCCCcHHHHHHHHHHHh
Confidence 5899999999999988777765
No 405
>PRK08506 replicative DNA helicase; Provisional
Probab=84.04 E-value=2.1 Score=52.83 Aligned_cols=52 Identities=13% Similarity=0.103 Sum_probs=33.6
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCe
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLK 95 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~ 95 (1396)
+||++.||.|||..++-++.+.+. .++.++|+..- .=..|....+ ....++.
T Consensus 195 ivIaarpg~GKT~fal~ia~~~~~-----~g~~V~~fSlE-Ms~~ql~~Rlla~~s~v~ 247 (472)
T PRK08506 195 IIIAARPSMGKTTLCLNMALKALN-----QDKGVAFFSLE-MPAEQLMLRMLSAKTSIP 247 (472)
T ss_pred EEEEcCCCCChHHHHHHHHHHHHh-----cCCcEEEEeCc-CCHHHHHHHHHHHhcCCC
Confidence 779999999999999887766532 34557776544 3345555444 3334443
No 406
>KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only]
Probab=83.92 E-value=5.9 Score=48.25 Aligned_cols=29 Identities=14% Similarity=0.029 Sum_probs=22.6
Q ss_pred hHHHHHHHHHHHhCCeEEeccChhhhccc
Q 000607 201 DYWQKIHDLETLMNSKVYTCASESVLSNF 229 (1396)
Q Consensus 201 ~~~~~i~~Le~~L~~~i~~~~~~~~l~~~ 229 (1396)
+++..+.++.+-++-..+++.++..|.+|
T Consensus 604 dvE~~~Yr~~r~~giT~iSVgHRkSL~kf 632 (659)
T KOG0060|consen 604 DVEGALYRKCREMGITFISVGHRKSLWKF 632 (659)
T ss_pred HHHHHHHHHHHHcCCeEEEeccHHHHHhh
Confidence 55666777788888888888888888765
No 407
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=83.85 E-value=1.3 Score=44.92 Aligned_cols=105 Identities=22% Similarity=0.243 Sum_probs=52.6
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe-CCCCcccCCccchHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW-GDMGVDFWDGATWKE 115 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~-G~~~~~~~~~~~~~~ 115 (1396)
++.|.+++|+|||....-++.. ++..+-+..=|++|-+- +=.+..|+++..+. |....-. ....-..
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~----L~~~g~kvgGf~t~EVR-------~gGkR~GF~Ivdl~tg~~~~la-~~~~~~~ 74 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEK----LREKGYKVGGFITPEVR-------EGGKRIGFKIVDLATGEEGILA-RVGFSRP 74 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHH----HHhcCceeeeEEeeeee-------cCCeEeeeEEEEccCCceEEEE-EcCCCCc
Confidence 5789999999999876544433 33334556667777531 11122456665554 3211000 0000011
Q ss_pred hhccCcEEEecHH-HHHHhHhhcCccccceeEEEEecccccc
Q 000607 116 EMSKHEVLVMTPQ-ILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 116 ~~~~~~ViV~T~q-~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
....+-|.|-..+ +....+++.+ ..-+++|+||.--+-
T Consensus 75 rvGkY~V~v~~le~i~~~al~rA~---~~aDvIIIDEIGpME 113 (179)
T COG1618 75 RVGKYGVNVEGLEEIAIPALRRAL---EEADVIIIDEIGPME 113 (179)
T ss_pred ccceEEeeHHHHHHHhHHHHHHHh---hcCCEEEEecccchh
Confidence 1112333333333 3333444333 347999999987553
No 408
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=83.85 E-value=5.5 Score=43.96 Aligned_cols=45 Identities=24% Similarity=0.302 Sum_probs=30.9
Q ss_pred HHHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 28 EALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 28 e~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
+.++.++.+ . +.+++++|+|||..+..++...+. .+.+++|+.--
T Consensus 10 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~-----~~~~v~yi~~e 60 (225)
T PRK09361 10 KMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAK-----NGKKVIYIDTE 60 (225)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEECC
Confidence 346667753 2 679999999999999887765543 24556666433
No 409
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=83.54 E-value=1.1 Score=49.95 Aligned_cols=41 Identities=34% Similarity=0.630 Sum_probs=29.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCcccHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
.+|.+|||+||+.. ++.+.. .+-.|....|+|++|++..+-
T Consensus 90 ~~VYGPTG~GKSqL----lRNLis~~lI~P~PETVfFItP~~~mIp 131 (369)
T PF02456_consen 90 GVVYGPTGSGKSQL----LRNLISCQLIQPPPETVFFITPQKDMIP 131 (369)
T ss_pred EEEECCCCCCHHHH----HHHhhhcCcccCCCCceEEECCCCCCCC
Confidence 56999999999975 444322 122456778999999987644
No 410
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=83.51 E-value=4.5 Score=49.49 Aligned_cols=22 Identities=27% Similarity=0.212 Sum_probs=18.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
+.+++|||+|||.++..+...+
T Consensus 259 i~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 259 FALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEECCCCccHHHHHHHHHHHH
Confidence 5599999999999988776544
No 411
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=83.49 E-value=7.7 Score=49.02 Aligned_cols=37 Identities=27% Similarity=0.335 Sum_probs=25.6
Q ss_pred hHHHHHHHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----N-TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+.-.+.+..+++. + .|+++|.|+|||.+|-.+.+.+
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal 62 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAV 62 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33344455555542 3 6789999999999988777655
No 412
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=83.29 E-value=3.6 Score=53.30 Aligned_cols=21 Identities=29% Similarity=0.469 Sum_probs=17.9
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++|+++|+|+|||.+|-.+.+
T Consensus 54 slLL~GPpGtGKTTLA~aIA~ 74 (725)
T PRK13341 54 SLILYGPPGVGKTTLARIIAN 74 (725)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 699999999999998866554
No 413
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=83.24 E-value=14 Score=39.58 Aligned_cols=129 Identities=15% Similarity=0.175 Sum_probs=68.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe---CCcccHHHHHH----HHHHhcCCeEEEEeCCCCcccCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV---PKVVLVPQQAE----AIKMHTDLKVGKYWGDMGVDFWDG 110 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv---Pt~~Lv~Q~~~----~i~~~~~~~v~~~~G~~~~~~~~~ 110 (1396)
++|-++.|+|||....-++.-++. ++.++.+++ ++++...|... ....+..-+...+.-+...-.|..
T Consensus 31 ~lIEGd~~tGKSvLsqr~~YG~L~-----~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~~~~ 105 (235)
T COG2874 31 ILIEGDNGTGKSVLSQRFAYGFLM-----NGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVNWGR 105 (235)
T ss_pred EEEECCCCccHHHHHHHHHHHHHh-----CCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccccCh
Confidence 789999999999987766654433 456666666 33334333221 001111111122221111223333
Q ss_pred cchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHH---HHHHHHhhccCCCCCCCeEEEEe
Q 000607 111 ATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACI---MTEFYHRLLETGDSNLPRIFGMT 187 (1396)
Q Consensus 111 ~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~i---m~~f~~~~~~~~~~~~p~ilgLT 187 (1396)
..-+ .+++.+. .+.+..+-+++|+|=-.+..-+.....+ |..+. .....-+++.+|
T Consensus 106 ~~~~--------------~~L~~l~-~~~k~~~~dViIIDSls~~~~~~~~~~vl~fm~~~r------~l~d~gKvIilT 164 (235)
T COG2874 106 RSAR--------------KLLDLLL-EFIKRWEKDVIIIDSLSAFATYDSEDAVLNFMTFLR------KLSDLGKVIILT 164 (235)
T ss_pred HHHH--------------HHHHHHH-hhHHhhcCCEEEEecccHHhhcccHHHHHHHHHHHH------HHHhCCCEEEEE
Confidence 2222 2233222 1333567799999999888866544444 33322 123456899999
Q ss_pred ccCCC
Q 000607 188 ASPIK 192 (1396)
Q Consensus 188 ATp~~ 192 (1396)
+-|..
T Consensus 165 vhp~~ 169 (235)
T COG2874 165 VHPSA 169 (235)
T ss_pred eChhh
Confidence 99854
No 414
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=83.23 E-value=1.9 Score=46.04 Aligned_cols=32 Identities=31% Similarity=0.227 Sum_probs=25.4
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHH
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIM 54 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iail 54 (1396)
-+.|.+.+..+.+. +++++++||||||...-.
T Consensus 11 ~~~~~~~l~~~v~~g~~i~I~G~tGSGKTTll~a 44 (186)
T cd01130 11 SPLQAAYLWLAVEARKNILISGGTGSGKTTLLNA 44 (186)
T ss_pred CHHHHHHHHHHHhCCCEEEEECCCCCCHHHHHHH
Confidence 45678888887774 799999999999986443
No 415
>PRK09354 recA recombinase A; Provisional
Probab=83.17 E-value=3.6 Score=48.10 Aligned_cols=50 Identities=26% Similarity=0.252 Sum_probs=35.3
Q ss_pred HHHHHHhc-C-----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 28 EALENALK-Q-----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 28 e~~~~~l~-~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
..++.++. | . +.|++|+|||||..++.++..... .+.+++|+-.--.+-.
T Consensus 46 ~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~-----~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 46 LALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----AGGTAAFIDAEHALDP 102 (349)
T ss_pred HHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHH-----cCCcEEEECCccchHH
Confidence 35667776 4 2 569999999999999887765532 3556788776655543
No 416
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=83.02 E-value=21 Score=41.05 Aligned_cols=125 Identities=18% Similarity=0.222 Sum_probs=72.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe-C-CcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV-P-KVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKE 115 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv-P-t~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~ 115 (1396)
+++++-.|+|||....-+.+++.. .++++++.+ . -|+=+..|-+.+-+..|..+.. |..+.|.
T Consensus 142 il~vGVNG~GKTTTIaKLA~~l~~-----~g~~VllaA~DTFRAaAiEQL~~w~er~gv~vI~--~~~G~Dp-------- 206 (340)
T COG0552 142 ILFVGVNGVGKTTTIAKLAKYLKQ-----QGKSVLLAAGDTFRAAAIEQLEVWGERLGVPVIS--GKEGADP-------- 206 (340)
T ss_pred EEEEecCCCchHhHHHHHHHHHHH-----CCCeEEEEecchHHHHHHHHHHHHHHHhCCeEEc--cCCCCCc--------
Confidence 669999999999987666665532 455666655 3 3455556666666656655543 2222221
Q ss_pred hhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHH--hhccCCCCCCCe--EEEEeccCC
Q 000607 116 EMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYH--RLLETGDSNLPR--IFGMTASPI 191 (1396)
Q Consensus 116 ~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~--~~~~~~~~~~p~--ilgLTATp~ 191 (1396)
..+..+.++++. -..++++++|=|=++-++ ..+|.++.. +..+......|+ ++.+=||-+
T Consensus 207 -----------AaVafDAi~~Ak--ar~~DvvliDTAGRLhnk---~nLM~EL~KI~rV~~k~~~~ap~e~llvlDAttG 270 (340)
T COG0552 207 -----------AAVAFDAIQAAK--ARGIDVVLIDTAGRLHNK---KNLMDELKKIVRVIKKDDPDAPHEILLVLDATTG 270 (340)
T ss_pred -----------HHHHHHHHHHHH--HcCCCEEEEeCcccccCc---hhHHHHHHHHHHHhccccCCCCceEEEEEEcccC
Confidence 123445555443 357899999999988765 233443322 112222233454 445578876
Q ss_pred CC
Q 000607 192 KS 193 (1396)
Q Consensus 192 ~~ 193 (1396)
++
T Consensus 271 qn 272 (340)
T COG0552 271 QN 272 (340)
T ss_pred hh
Confidence 63
No 417
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=82.99 E-value=5.1 Score=44.52 Aligned_cols=105 Identities=17% Similarity=0.221 Sum_probs=65.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
.+++.+|+|+||++.|-.+..+. + .++|-|-+..|+..|.-+=++.
T Consensus 168 giLLyGPPGTGKSYLAKAVATEA-------n--STFFSvSSSDLvSKWmGESEkL------------------------- 213 (439)
T KOG0739|consen 168 GILLYGPPGTGKSYLAKAVATEA-------N--STFFSVSSSDLVSKWMGESEKL------------------------- 213 (439)
T ss_pred eEEEeCCCCCcHHHHHHHHHhhc-------C--CceEEeehHHHHHHHhccHHHH-------------------------
Confidence 38899999999999886655432 1 4888888888888775333321
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC------CcHHHHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK------HQYACIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~------~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
+.+++. .-+-+.-++|.+||.+.+.+. .+.++|-.+|+-. +.-...+...+|.|-||-
T Consensus 214 -------------VknLFe--mARe~kPSIIFiDEiDslcg~r~enEseasRRIKTEfLVQ-MqGVG~d~~gvLVLgATN 277 (439)
T KOG0739|consen 214 -------------VKNLFE--MARENKPSIIFIDEIDSLCGSRSENESEASRRIKTEFLVQ-MQGVGNDNDGVLVLGATN 277 (439)
T ss_pred -------------HHHHHH--HHHhcCCcEEEeehhhhhccCCCCCchHHHHHHHHHHHHh-hhccccCCCceEEEecCC
Confidence 011111 111246788999999977642 4567777777743 332334445566666664
Q ss_pred C
Q 000607 191 I 191 (1396)
Q Consensus 191 ~ 191 (1396)
+
T Consensus 278 i 278 (439)
T KOG0739|consen 278 I 278 (439)
T ss_pred C
Confidence 3
No 418
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=82.92 E-value=9.1 Score=44.77 Aligned_cols=21 Identities=33% Similarity=0.439 Sum_probs=16.1
Q ss_pred CEEE-EeCCCchHHHHHHHHHH
Q 000607 37 NTIV-FLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv-~~~TGsGKT~iailli~ 57 (1396)
+.++ ++|+|+|||..+-.+..
T Consensus 44 ~~lll~G~~G~GKT~la~~l~~ 65 (316)
T PHA02544 44 NMLLHSPSPGTGKTTVAKALCN 65 (316)
T ss_pred eEEEeeCcCCCCHHHHHHHHHH
Confidence 4554 89999999998765544
No 419
>PRK09183 transposase/IS protein; Provisional
Probab=82.91 E-value=1.4 Score=49.71 Aligned_cols=34 Identities=26% Similarity=0.275 Sum_probs=25.0
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEe
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLV 75 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~Lv 75 (1396)
|+++.+|+|+|||..+..+...... .+..++|+.
T Consensus 104 ~v~l~Gp~GtGKThLa~al~~~a~~-----~G~~v~~~~ 137 (259)
T PRK09183 104 NIVLLGPSGVGKTHLAIALGYEAVR-----AGIKVRFTT 137 (259)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHH-----cCCeEEEEe
Confidence 7999999999999998876554322 355566653
No 420
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=82.69 E-value=5.8 Score=50.42 Aligned_cols=22 Identities=27% Similarity=0.197 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+.+.+
T Consensus 41 ~Lf~Gp~GvGKttlA~~lAk~L 62 (620)
T PRK14954 41 YIFSGLRGVGKTTAARVFAKAV 62 (620)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999998777765
No 421
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=82.63 E-value=4.1 Score=58.84 Aligned_cols=66 Identities=15% Similarity=0.110 Sum_probs=46.1
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.+-|.+++..++.. + ++|.+..|+|||.+...++..+.+.... .+..++.++|| ...++.++.
T Consensus 1018 ~~Lt~~Q~~Ai~~il~~~~~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~-~g~~v~glApT----~~Aa~~L~~ 1086 (1960)
T TIGR02760 1018 ERLTHGQKQAIHLIISTKDRFVAVQGLAGVGKTTMLESRYKPVLQAFES-EQLQVIGLAPT----HEAVGELKS 1086 (1960)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHhHHHHHHHHHHHHHh-cCCeEEEEeCh----HHHHHHHHh
Confidence 35799999999999864 3 6789999999998864333433333322 45678999999 444555553
No 422
>COG4962 CpaF Flp pilus assembly protein, ATPase CpaF [Intracellular trafficking and secretion]
Probab=82.55 E-value=1.6 Score=49.99 Aligned_cols=53 Identities=23% Similarity=0.120 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHhcC--CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccH
Q 000607 23 RNYQLEALENALKQ--NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLV 81 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~--n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv 81 (1396)
.+-|.+.+..+.+. |++|++.||||||...=.+.. . -++..|++.+-.|-+|-
T Consensus 159 ~~~~a~~L~~av~~r~NILisGGTGSGKTTlLNal~~----~--i~~~eRvItiEDtaELq 213 (355)
T COG4962 159 IRRAAKFLRRAVGIRCNILISGGTGSGKTTLLNALSG----F--IDSDERVITIEDTAELQ 213 (355)
T ss_pred CHHHHHHHHHHHhhceeEEEeCCCCCCHHHHHHHHHh----c--CCCcccEEEEeehhhhc
Confidence 44566666666664 999999999999976432222 1 24555888888887773
No 423
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=82.46 E-value=5.8 Score=42.39 Aligned_cols=23 Identities=26% Similarity=0.387 Sum_probs=19.7
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
..++.+|.|+|||..|..+++.+
T Consensus 16 ~~L~~G~~G~gkt~~a~~~~~~l 38 (188)
T TIGR00678 16 AYLFAGPEGVGKELLALALAKAL 38 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 38899999999999988777765
No 424
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=82.23 E-value=5.8 Score=55.92 Aligned_cols=66 Identities=20% Similarity=0.081 Sum_probs=45.5
Q ss_pred ccchHHHHHHHHHHhcC-C--EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALKQ-N--TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n--~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
..+.+-|.+++..++.. + ++|.+..|+|||.+.-.++..+ +.+....+.+++.++|| ..-+..++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~dr~~~I~G~AGTGKTT~l~~v~~~~-~~l~~~~~~~V~glAPT----grAAk~L~e 1034 (1747)
T PRK13709 966 EGLTSGQRAATRMILESTDRFTVVQGYAGVGKTTQFRAVMSAV-NTLPESERPRVVGLGPT----HRAVGEMRS 1034 (1747)
T ss_pred CCCCHHHHHHHHHHHhCCCcEEEEEeCCCCCHHHHHHHHHHHH-HHhhcccCceEEEECCc----HHHHHHHHh
Confidence 34789999999999974 3 8899999999998854444433 22222245678889999 344444543
No 425
>PRK10436 hypothetical protein; Provisional
Probab=82.22 E-value=2.6 Score=51.55 Aligned_cols=54 Identities=24% Similarity=0.216 Sum_probs=36.3
Q ss_pred chHHHHHHHHHHhc---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALK---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+-|.+.+..+.. |.+++++|||||||.....++.++ . ...++++-+-..++.
T Consensus 202 ~~~~~~~~l~~~~~~~~GliLvtGpTGSGKTTtL~a~l~~~----~-~~~~~i~TiEDPvE~ 258 (462)
T PRK10436 202 MTPAQLAQFRQALQQPQGLILVTGPTGSGKTVTLYSALQTL----N-TAQINICSVEDPVEI 258 (462)
T ss_pred cCHHHHHHHHHHHHhcCCeEEEECCCCCChHHHHHHHHHhh----C-CCCCEEEEecCCccc
Confidence 56778888887765 358899999999998765455543 1 234556655555543
No 426
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=82.11 E-value=2.5 Score=53.19 Aligned_cols=157 Identities=10% Similarity=0.023 Sum_probs=91.1
Q ss_pred cccchHHHHHHHHHHhcC---CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHH-HHHHhc--
Q 000607 19 LPFARNYQLEALENALKQ---NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAE-AIKMHT-- 92 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~---n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~-~i~~~~-- 92 (1396)
.....|||.|.++.+-.. .+.+..++-+|||.++...|-+..+ ..+ ..++++.||..++..+.+ .|...+
T Consensus 14 ~~~~~Py~~eimd~~~~~~v~~Vv~~k~aQ~GkT~~~~n~~g~~i~---~~P-~~~l~v~Pt~~~a~~~~~~rl~Pmi~~ 89 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPSVREVVVMKSAQVGKTELLLNWIGYSID---QDP-GPMLYVQPTDDAAKDFSKERLDPMIRA 89 (557)
T ss_pred CCCCChhHHHHHHhcCCcCccEEEEEEcchhhHhHHHHhhceEEEE---eCC-CCEEEEEEcHHHHHHHHHHHHHHHHHh
Confidence 345789999999988874 5889999999999976655543322 223 449999999999888663 333321
Q ss_pred --CCeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCC-----CcHHHHH
Q 000607 93 --DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGK-----HQYACIM 165 (1396)
Q Consensus 93 --~~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~-----~~~~~im 165 (1396)
.++ ..+......+ -......+.+.+..+.+.....- ..+.-..+.++++||.+..-.+ +|.....
T Consensus 90 sp~l~-~~~~~~~~~~-~~~t~~~k~f~gg~l~~~ga~S~------~~l~s~~~r~~~~DEvD~~p~~~~~eGdp~~la~ 161 (557)
T PF05876_consen 90 SPVLR-RKLSPSKSRD-SGNTILYKRFPGGFLYLVGANSP------SNLRSRPARYLLLDEVDRYPDDVGGEGDPVELAE 161 (557)
T ss_pred CHHHH-HHhCchhhcc-cCCchhheecCCCEEEEEeCCCC------cccccCCcCEEEEechhhccccCccCCCHHHHHH
Confidence 111 1122210000 01122334444555666554322 1233457899999999999532 4555544
Q ss_pred HHHHHhhccCCCCCCCeEEEEeccCCCCC
Q 000607 166 TEFYHRLLETGDSNLPRIFGMTASPIKSK 194 (1396)
Q Consensus 166 ~~f~~~~~~~~~~~~p~ilgLTATp~~~~ 194 (1396)
++... ....+ .+.+..||....
T Consensus 162 ~R~~t------f~~~~-K~~~~STPt~~~ 183 (557)
T PF05876_consen 162 KRTKT------FGSNR-KILRISTPTIEG 183 (557)
T ss_pred HHHhh------hccCc-EEEEeCCCCCCC
Confidence 43221 11233 455666887653
No 427
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=82.09 E-value=1.6 Score=47.24 Aligned_cols=40 Identities=18% Similarity=0.156 Sum_probs=27.2
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
-+++++|||||||.....++..+. .+.+++++++....++
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~----~~~~~~i~t~e~~~E~ 42 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN----KNKTHHILTIEDPIEF 42 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh----hcCCcEEEEEcCCccc
Confidence 478999999999988665555442 2234567777766554
No 428
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=82.08 E-value=6.3 Score=43.48 Aligned_cols=52 Identities=25% Similarity=0.202 Sum_probs=31.7
Q ss_pred HHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCccc
Q 000607 29 ALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 29 ~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~L 80 (1396)
.++.++.+ . +.|++++|+|||..+..++........ ...+..++++.....+
T Consensus 7 ~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~ 65 (226)
T cd01393 7 ALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF 65 (226)
T ss_pred HHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC
Confidence 45666653 3 679999999999998876654321000 0012567777765443
No 429
>PRK06921 hypothetical protein; Provisional
Probab=82.06 E-value=2 Score=48.77 Aligned_cols=41 Identities=15% Similarity=0.079 Sum_probs=28.4
Q ss_pred CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVP 82 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~ 82 (1396)
++++.+++|+|||+.+..++.++... .+..++|+.. ..+..
T Consensus 119 ~l~l~G~~G~GKThLa~aia~~l~~~----~g~~v~y~~~-~~l~~ 159 (266)
T PRK06921 119 SIALLGQPGSGKTHLLTAAANELMRK----KGVPVLYFPF-VEGFG 159 (266)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHhhh----cCceEEEEEH-HHHHH
Confidence 69999999999999988777765431 1455666553 34433
No 430
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=81.97 E-value=4.9 Score=48.33 Aligned_cols=21 Identities=24% Similarity=0.510 Sum_probs=17.5
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||++|-.+..
T Consensus 181 gvLL~GppGTGKT~LAkalA~ 201 (398)
T PTZ00454 181 GVLLYGPPGTGKTMLAKAVAH 201 (398)
T ss_pred eEEEECCCCCCHHHHHHHHHH
Confidence 599999999999998765544
No 431
>PRK05580 primosome assembly protein PriA; Validated
Probab=81.94 E-value=10 Score=49.35 Aligned_cols=94 Identities=11% Similarity=0.134 Sum_probs=71.9
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
+.|-...+..+.... ..+.++||.++++..+..+.+.|++. -+.++..+||. ++..+|.+...+.++|+
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~----fg~~v~~~~s~------~s~~~r~~~~~~~~~g~ 241 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRAR----FGAPVAVLHSG------LSDGERLDEWRKAKRGE 241 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH----hCCCEEEEECC------CCHHHHHHHHHHHHcCC
Confidence 567776666555432 24678999999999999999999865 25678889987 48888999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFD 474 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD 474 (1396)
.+|+|+|..+- =+.+.+..+||.-+
T Consensus 242 ~~IVVgTrsal-~~p~~~l~liVvDE 266 (679)
T PRK05580 242 AKVVIGARSAL-FLPFKNLGLIIVDE 266 (679)
T ss_pred CCEEEeccHHh-cccccCCCEEEEEC
Confidence 99999996432 14566788888654
No 432
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=81.91 E-value=15 Score=42.88 Aligned_cols=37 Identities=27% Similarity=0.356 Sum_probs=26.9
Q ss_pred hHHHHHHHHHHhcC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENALKQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++.+.+.+..++++ ++++++|+|+|||.++-.+...+
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l 62 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALAREL 62 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 55556666665543 49999999999999887666554
No 433
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=81.87 E-value=4.1 Score=54.27 Aligned_cols=80 Identities=19% Similarity=0.346 Sum_probs=64.0
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-ccccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-ILEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-vleeGiDI 464 (1396)
.+.+++|.|+++.-|...++.+++.... -++++..++|.. +.+++.++++.+++|+.+|+|+|. .+...+.+
T Consensus 499 ~g~qvlvLvPT~~LA~Q~~~~f~~~~~~-~~i~v~~Lsg~~------~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~v~f 571 (926)
T TIGR00580 499 DGKQVAVLVPTTLLAQQHFETFKERFAN-FPVTIELLSRFR------SAKEQNEILKELASGKIDILIGTHKLLQKDVKF 571 (926)
T ss_pred hCCeEEEEeCcHHHHHHHHHHHHHHhcc-CCcEEEEEeccc------cHHHHHHHHHHHHcCCceEEEchHHHhhCCCCc
Confidence 4578999999999999999988875433 257788888864 778889999999999999999996 45566777
Q ss_pred CcccEEEE
Q 000607 465 QSCNLVIM 472 (1396)
Q Consensus 465 p~~~lVI~ 472 (1396)
.++.+||.
T Consensus 572 ~~L~llVI 579 (926)
T TIGR00580 572 KDLGLLII 579 (926)
T ss_pred ccCCEEEe
Confidence 77777663
No 434
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=81.81 E-value=4 Score=52.01 Aligned_cols=22 Identities=27% Similarity=0.258 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+++.+
T Consensus 41 ~Lf~Gp~G~GKTtlA~~lA~~l 62 (585)
T PRK14950 41 YLFTGPRGVGKTSTARILAKAV 62 (585)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5899999999999998877765
No 435
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=81.77 E-value=8 Score=46.62 Aligned_cols=118 Identities=14% Similarity=0.090 Sum_probs=58.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc-HHHHHHHHHHhcCCeEEEEeCCCCcccCCccchHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL-VPQQAEAIKMHTDLKVGKYWGDMGVDFWDGATWKEE 116 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L-v~Q~~~~i~~~~~~~v~~~~G~~~~~~~~~~~~~~~ 116 (1396)
+.+++|||+|||.....+...+. .+..+.+..++.+++.-. ..+|...+.+..++.+...
T Consensus 194 i~lvGpnG~GKTTtlakLA~~~~--~~~~~~~v~~i~~d~~rigalEQL~~~a~ilGvp~~~v----------------- 254 (420)
T PRK14721 194 YALIGPTGVGKTTTTAKLAARAV--IRHGADKVALLTTDSYRIGGHEQLRIYGKLLGVSVRSI----------------- 254 (420)
T ss_pred EEEECCCCCCHHHHHHHHHHHHH--HhcCCCeEEEEecCCcchhHHHHHHHHHHHcCCceecC-----------------
Confidence 66999999999887665443321 112233445555655222 2334445555445444321
Q ss_pred hccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 117 MSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 117 ~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
.++.-+...+. .+.+.+++++|.+=+...+.....-+..+. ........+|.|+||-.
T Consensus 255 --------~~~~dl~~al~----~l~~~d~VLIDTaGrsqrd~~~~~~l~~l~-----~~~~~~~~~LVl~at~~ 312 (420)
T PRK14721 255 --------KDIADLQLMLH----ELRGKHMVLIDTVGMSQRDQMLAEQIAMLS-----QCGTQVKHLLLLNATSS 312 (420)
T ss_pred --------CCHHHHHHHHH----HhcCCCEEEecCCCCCcchHHHHHHHHHHh-----ccCCCceEEEEEcCCCC
Confidence 22222222222 246778999998633322211222222221 11223346788999853
No 436
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=81.41 E-value=9.1 Score=44.59 Aligned_cols=37 Identities=8% Similarity=0.088 Sum_probs=26.2
Q ss_pred hHHHHHHHHHHh----cC----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 23 RNYQLEALENAL----KQ----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 23 r~yQ~e~~~~~l----~~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|||....+... ++ -.++.+|.|.||+..|..+.+.+
T Consensus 4 yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 4 YPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 455555555444 23 27799999999999988777655
No 437
>PF14617 CMS1: U3-containing 90S pre-ribosomal complex subunit
Probab=80.98 E-value=2.2 Score=47.34 Aligned_cols=87 Identities=16% Similarity=0.166 Sum_probs=57.0
Q ss_pred CCcEEEEEeCCcccHHHHHHHHHHhc--CCeEEEEeCCC-CcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccc
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKMHT--DLKVGKYWGDM-GVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNM 143 (1396)
Q Consensus 67 ~~k~vl~LvPt~~Lv~Q~~~~i~~~~--~~~v~~~~G~~-~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~ 143 (1396)
+.+.++||+.+--=|....+.++.+. +..|..+++-. .++ . +...-.-...+|.|+||+++..++..+-+.+++
T Consensus 125 gsP~~lvvs~SalRa~dl~R~l~~~~~k~~~v~KLFaKH~Kl~--e-qv~~L~~~~~~i~vGTP~Rl~kLle~~~L~l~~ 201 (252)
T PF14617_consen 125 GSPHVLVVSSSALRAADLIRALRSFKGKDCKVAKLFAKHIKLE--E-QVKLLKKTRVHIAVGTPGRLSKLLENGALSLSN 201 (252)
T ss_pred CCCEEEEEcchHHHHHHHHHHHHhhccCCchHHHHHHhhccHH--H-HHHHHHhCCceEEEeChHHHHHHHHcCCCCccc
Confidence 45778888888333445556666553 23444444431 111 0 111111126899999999999999999999999
Q ss_pred eeEEEEecccccc
Q 000607 144 IKVLILDECHHAR 156 (1396)
Q Consensus 144 i~llI~DEaH~~~ 156 (1396)
+.+||+|--|.=.
T Consensus 202 l~~ivlD~s~~D~ 214 (252)
T PF14617_consen 202 LKRIVLDWSYLDQ 214 (252)
T ss_pred CeEEEEcCCcccc
Confidence 9999999877544
No 438
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=80.84 E-value=7.1 Score=40.28 Aligned_cols=34 Identities=21% Similarity=0.120 Sum_probs=24.1
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEE
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFL 74 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~L 74 (1396)
|-+.|..++|.|||.+|+....+.+. .+.+++|+
T Consensus 3 G~i~vy~g~G~Gkt~~a~g~~~ra~~-----~g~~v~~v 36 (159)
T cd00561 3 GLIQVYTGNGKGKTTAALGLALRALG-----HGYRVGVV 36 (159)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEE
Confidence 34678999999999999885443322 46667773
No 439
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=80.74 E-value=3.9 Score=50.93 Aligned_cols=73 Identities=19% Similarity=0.130 Sum_probs=57.4
Q ss_pred cccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHHHHHhc-CCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 19 ~~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l~~~~~-~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
..++-.-|..+++..+.. =.|+.+|+|+|||++.+.++..++.... ....-.++++|=|+.-++|.-..+-.+
T Consensus 376 ~~ildsSq~~A~qs~ltyelsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~~ 450 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYELSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYYH 450 (1025)
T ss_pred ceeecHHHHHHHHHHhhhhhheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHhc
Confidence 345778899999999987 4899999999999999998887765321 113456899999999999987777654
No 440
>PRK11823 DNA repair protein RadA; Provisional
Probab=80.38 E-value=6.4 Score=48.26 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=37.8
Q ss_pred HHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 28 EALENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 28 e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+-++.++.| -+++.+++|+|||..+..++..+.. .+.+++++.-. +-..|.....++
T Consensus 67 ~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~-----~g~~vlYvs~E-es~~qi~~ra~r 129 (446)
T PRK11823 67 GELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAA-----AGGKVLYVSGE-ESASQIKLRAER 129 (446)
T ss_pred HHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEcc-ccHHHHHHHHHH
Confidence 356677764 2779999999999988776665532 35568887754 444565544443
No 441
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=80.06 E-value=3.2 Score=49.21 Aligned_cols=42 Identities=19% Similarity=0.122 Sum_probs=28.8
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++++|++|||||||...-.++.++.+ .++..+++.+-...++
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~---~~~~~~IvtiEdp~E~ 191 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGE---TYPDRKIVTYEDPIEY 191 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHh---cCCCceEEEEecCchh
Confidence 57999999999999887666665432 2334566666655555
No 442
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=79.93 E-value=2.8 Score=49.53 Aligned_cols=41 Identities=17% Similarity=0.101 Sum_probs=28.0
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++++|++|||||||...-.++..+ ..+.+++++.+-..+++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i----~~~~~~~i~tiEdp~E~ 163 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYI----NKNAAGHIITIEDPIEY 163 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhh----CcCCCCEEEEEcCChhh
Confidence 578999999999998765544433 22335567777666554
No 443
>TIGR03819 heli_sec_ATPase helicase/secretion neighborhood ATPase. Members of this protein family comprise a distinct clade of putative ATPase associated with an integral membrane complex likely to act in pilus formation, secretion, or conjugal transfer. The association of most members with a nearby gene for a DEAH-box helicase suggests a role in conjugal transfer.
Probab=79.91 E-value=2.6 Score=49.55 Aligned_cols=51 Identities=22% Similarity=0.122 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 24 NYQLEALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 24 ~yQ~e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
+.+.+.+..+.+ +|++++++||||||...-.++.. . ++..+++.+-.+.+|
T Consensus 165 ~~~~~~L~~~v~~~~~ili~G~tGsGKTTll~al~~~----i--~~~~riv~iEd~~El 217 (340)
T TIGR03819 165 PGVARLLRAIVAARLAFLISGGTGSGKTTLLSALLAL----V--APDERIVLVEDAAEL 217 (340)
T ss_pred HHHHHHHHHHHhCCCeEEEECCCCCCHHHHHHHHHcc----C--CCCCcEEEECCccee
Confidence 456667776666 38999999999998865444332 2 345567777777777
No 444
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=79.84 E-value=3.2 Score=52.53 Aligned_cols=54 Identities=20% Similarity=0.076 Sum_probs=36.0
Q ss_pred chHHHHHHHHHHhc---CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALK---QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~---~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+-|.+.+..+.. |.+++++|||||||.....++..+ . ...++++-+-..++.
T Consensus 300 ~~~~~~~~l~~~~~~~~Glilv~G~tGSGKTTtl~a~l~~~----~-~~~~~i~tiEdpvE~ 356 (564)
T TIGR02538 300 FEPDQKALFLEAIHKPQGMVLVTGPTGSGKTVSLYTALNIL----N-TEEVNISTAEDPVEI 356 (564)
T ss_pred CCHHHHHHHHHHHHhcCCeEEEECCCCCCHHHHHHHHHHhh----C-CCCceEEEecCCcee
Confidence 46778888887765 358899999999998755455443 1 234555555555544
No 445
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=79.81 E-value=0.41 Score=54.83 Aligned_cols=40 Identities=28% Similarity=0.281 Sum_probs=34.2
Q ss_pred ccchHHHHHHHHHHhcC-CEEEEeCCCchHHHHHHHHHHHH
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 20 ~~~r~yQ~e~~~~~l~~-n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.-|.+.|.|+++-++.+ +++.+++||||||-++.+.|..+
T Consensus 23 ~lptdvqaeaiplilgggdvlmaaetgsgktgaf~lpilqi 63 (725)
T KOG0349|consen 23 TLPTDVQAEAIPLILGGGDVLMAAETGSGKTGAFCLPILQI 63 (725)
T ss_pred ccccccccccccEEecCCcEEEEeccCCCCccceehhhHHH
Confidence 34899999999999987 89999999999999888755443
No 446
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=79.80 E-value=12 Score=46.81 Aligned_cols=94 Identities=10% Similarity=0.100 Sum_probs=70.5
Q ss_pred cHHHHHHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCC
Q 000607 369 TEKIVCLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGL 448 (1396)
Q Consensus 369 s~Kv~~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~ 448 (1396)
+-|-...+..+.... ..+.++||.++++..+..+.+.|++. -+.++..+||. ++..+|.+...+.++|+
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~----f~~~v~vlhs~------~~~~er~~~~~~~~~g~ 76 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYR----FGSQVAVLHSG------LSDSEKLQAWRKVKNGE 76 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHH----hCCcEEEEECC------CCHHHHHHHHHHHHcCC
Confidence 566666666555432 24678999999999999999999865 24577888887 48888999999999999
Q ss_pred eeEEEEecccccccCCCcccEEEEeC
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFD 474 (1396)
Q Consensus 449 ~nvLVaTsvleeGiDIp~~~lVI~fD 474 (1396)
.+|+|+|..+-- .-++++.+||.-+
T Consensus 77 ~~IVVGTrsalf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 77 ILVVIGTRSALF-LPFKNLGLIIVDE 101 (505)
T ss_pred CCEEECChHHHc-CcccCCCEEEEEC
Confidence 999999964322 3566778888544
No 447
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=79.79 E-value=1 Score=50.01 Aligned_cols=16 Identities=31% Similarity=0.382 Sum_probs=13.4
Q ss_pred EEEEeCCCchHHHHHH
Q 000607 38 TIVFLETGSGKTLIAI 53 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iai 53 (1396)
++|.++.|||||....
T Consensus 1 ~vv~G~pGsGKSt~i~ 16 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIK 16 (234)
T ss_pred CEEEcCCCCCHHHHHH
Confidence 4799999999998643
No 448
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=79.51 E-value=5.6 Score=46.70 Aligned_cols=52 Identities=23% Similarity=0.107 Sum_probs=31.6
Q ss_pred HHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCccc
Q 000607 29 ALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 29 ~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~L 80 (1396)
.++.++.| . +.|+++.|+|||..+..++..... ......+.+++|+-..-.+
T Consensus 114 ~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~tF 172 (344)
T PLN03187 114 ALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGTF 172 (344)
T ss_pred hHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCCC
Confidence 46666664 2 569999999999988765432211 0111223578888765433
No 449
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.36 E-value=4.8 Score=49.11 Aligned_cols=46 Identities=13% Similarity=0.190 Sum_probs=29.5
Q ss_pred cceeEEEEeccccccC------CCcHHHHHHHHHHhhccCCCCCCCeEEEEecc
Q 000607 142 NMIKVLILDECHHARG------KHQYACIMTEFYHRLLETGDSNLPRIFGMTAS 189 (1396)
Q Consensus 142 ~~i~llI~DEaH~~~~------~~~~~~im~~f~~~~~~~~~~~~p~ilgLTAT 189 (1396)
+.-++|.|||.+.+.- ...-.+++..++.+. .....+..++.+-||
T Consensus 603 saPCVIFFDEiDaL~p~R~~~~s~~s~RvvNqLLtEl--DGl~~R~gV~viaAT 654 (802)
T KOG0733|consen 603 SAPCVIFFDEIDALVPRRSDEGSSVSSRVVNQLLTEL--DGLEERRGVYVIAAT 654 (802)
T ss_pred CCCeEEEecchhhcCcccCCCCchhHHHHHHHHHHHh--cccccccceEEEeec
Confidence 5678999999998772 245667777777543 122344455666666
No 450
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=79.33 E-value=2.1 Score=49.94 Aligned_cols=24 Identities=46% Similarity=0.591 Sum_probs=20.7
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHH
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+|+.+|||||||+.|--+.+.+
T Consensus 227 SNvLllGPtGsGKTllaqTLAr~l 250 (564)
T KOG0745|consen 227 SNVLLLGPTGSGKTLLAQTLARVL 250 (564)
T ss_pred ccEEEECCCCCchhHHHHHHHHHh
Confidence 389999999999999988777654
No 451
>PF12846 AAA_10: AAA-like domain
Probab=79.31 E-value=2.1 Score=49.46 Aligned_cols=37 Identities=32% Similarity=0.367 Sum_probs=26.3
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
++++|+++||+|||..+..++..++. .+..++++=|.
T Consensus 2 ~h~~i~G~tGsGKT~~~~~l~~~~~~-----~g~~~~i~D~~ 38 (304)
T PF12846_consen 2 PHTLILGKTGSGKTTLLKNLLEQLIR-----RGPRVVIFDPK 38 (304)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHHH-----cCCCEEEEcCC
Confidence 57999999999999887766665533 23445665554
No 452
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=79.24 E-value=3.5 Score=46.75 Aligned_cols=35 Identities=23% Similarity=0.249 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHhc----C-CEEEEeCCCchHHHHHHHHHH
Q 000607 23 RNYQLEALENALK----Q-NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 23 r~yQ~e~~~~~l~----~-n~Iv~~~TGsGKT~iailli~ 57 (1396)
.+...++++.++. + ++++.+|+|+|||.+|-.+..
T Consensus 4 t~~~~~l~~~~l~~l~~g~~vLL~G~~GtGKT~lA~~la~ 43 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSGYPVHLRGPAGTGKTTLAMHVAR 43 (262)
T ss_pred CHHHHHHHHHHHHHHhcCCeEEEEcCCCCCHHHHHHHHHH
Confidence 3445555554443 4 799999999999999876544
No 453
>PRK07004 replicative DNA helicase; Provisional
Probab=79.14 E-value=4.2 Score=50.03 Aligned_cols=114 Identities=16% Similarity=0.105 Sum_probs=56.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCeEEEE-eCCCCcccCCc-cchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLKVGKY-WGDMGVDFWDG-ATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~v~~~-~G~~~~~~~~~-~~~~ 114 (1396)
+||++.+|+|||..++-++.+.+.. .++.++|...- .=..|....+ ....++....+ .|....+.|.. ..+.
T Consensus 216 iviaarpg~GKT~~al~ia~~~a~~----~~~~v~~fSlE-M~~~ql~~R~la~~~~v~~~~i~~g~l~~~e~~~~~~a~ 290 (460)
T PRK07004 216 IIVAGRPSMGKTAFSMNIGEYVAVE----YGLPVAVFSME-MPGTQLAMRMLGSVGRLDQHRMRTGRLTDEDWPKLTHAV 290 (460)
T ss_pred EEEEeCCCCCccHHHHHHHHHHHHH----cCCeEEEEeCC-CCHHHHHHHHHHhhcCCCHHHHhcCCCCHHHHHHHHHHH
Confidence 7799999999999988777655421 24556666533 2234544444 33333333222 34333333322 1122
Q ss_pred HhhccCcEEEe-----cHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 115 EEMSKHEVLVM-----TPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 115 ~~~~~~~ViV~-----T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
..+.+..+.|. |+..+....++-......+++||+|=-|.+.
T Consensus 291 ~~l~~~~l~I~d~~~~~~~~i~~~~r~l~~~~~~~~lviIDYLql~~ 337 (460)
T PRK07004 291 QKMSEAQLFIDETGGLNPMELRSRARRLARQCGKLGLIIIDYLQLMS 337 (460)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEChhhhcc
Confidence 33334556552 3433333222111111246788887665553
No 454
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=79.00 E-value=6.5 Score=46.86 Aligned_cols=20 Identities=25% Similarity=0.315 Sum_probs=16.2
Q ss_pred C-EEEEeCCCchHHHHHHHHH
Q 000607 37 N-TIVFLETGSGKTLIAIMLL 56 (1396)
Q Consensus 37 n-~Iv~~~TGsGKT~iailli 56 (1396)
| +.+++++|+|||...-.+.
T Consensus 114 nplfi~G~~GlGKTHLl~Aig 134 (408)
T COG0593 114 NPLFIYGGVGLGKTHLLQAIG 134 (408)
T ss_pred CcEEEECCCCCCHHHHHHHHH
Confidence 5 7799999999999765433
No 455
>PRK05748 replicative DNA helicase; Provisional
Probab=78.97 E-value=5.5 Score=49.12 Aligned_cols=114 Identities=11% Similarity=0.087 Sum_probs=57.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCeEEE-EeCCCCcccCCc-cchH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLKVGK-YWGDMGVDFWDG-ATWK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~v~~-~~G~~~~~~~~~-~~~~ 114 (1396)
++|++.||.|||..++-++...+. ..++.++|+..- .-..|....+ ....++.... ..|......|.. ....
T Consensus 206 ivIaarpg~GKT~~al~ia~~~a~----~~g~~v~~fSlE-ms~~~l~~R~l~~~~~v~~~~i~~~~l~~~e~~~~~~a~ 280 (448)
T PRK05748 206 IIVAARPSVGKTAFALNIAQNVAT----KTDKNVAIFSLE-MGAESLVMRMLCAEGNIDAQRLRTGQLTDDDWPKLTIAM 280 (448)
T ss_pred EEEEeCCCCCchHHHHHHHHHHHH----hCCCeEEEEeCC-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 779999999999998877766542 134567776544 3345655555 3444433321 223322222211 0111
Q ss_pred HhhccCcEEEe-----cHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 115 EEMSKHEVLVM-----TPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 115 ~~~~~~~ViV~-----T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
..+.+..+.|. |...+...+.+-......+++||+|=-|.+.
T Consensus 281 ~~l~~~~~~i~d~~~~ti~~i~~~~r~~~~~~~~~~~vvIDyL~li~ 327 (448)
T PRK05748 281 GSLSDAPIYIDDTPGIKVTEIRARCRRLAQEHGGLGLILIDYLQLIQ 327 (448)
T ss_pred HHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccchhcC
Confidence 22234445442 3343433322111111257788888777654
No 456
>PF03368 Dicer_dimer: Dicer dimerisation domain; InterPro: IPR005034 This domain is found in members of the Dicer protein family of dsRNA nucleases. This entry represents a dsRNA-binding domain. RNA interference (RNAi) is an ancient gene-silencing process that plays a fundamental role in diverse eukaryotic functions including viral defence, chromatin remodelling, genome rearrangement, developmental timing, brain morphogenesis, and stem cell maintenance. All RNAi pathways require the multidomain ribonuclease Dicer, which initiates RNAi by cleaving double-stranded RNA (dsRNA) substrates into small fragments ~25 nuleotides in length. A typical eukaryotic Dicer consists of a helicase domain (PDOC51192 from PROSITEDOC), a domain of unknown function, and a PAZ domain (PDOC50821 from PROSITEDOC) at the amino (N)-terminus as well as two ribonuclease III domains (PDOC00448 from PROSITEDOC) and a dsRNA-binding domain (dsRBD) (PDOC50137 from PROSITEDOC) at the carboxy (C)-terminus. The domain of unknown function of ~100 amino acids is predicted to adopt the canonical alpha-beta-beta-beta-alpha-fold found in all dsRBDs [, , , ].; GO: 0016891 endoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2KOU_A.
Probab=78.84 E-value=7.9 Score=35.82 Aligned_cols=65 Identities=23% Similarity=0.147 Sum_probs=37.3
Q ss_pred hhHHHHHHHhcCCC-----CCcceeeccCCceEEEEEEEECC----EEEEEEEeecCHHHHHHHHHHHHHHHhhhhC
Q 000607 1326 VRELTEYCQKNHFS-----MKKPVASRISGKAAVTVEVQANG----RLFEHTFLDADKKTAKKVACKEVLKSLRASF 1393 (1396)
Q Consensus 1326 ~~~L~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~v~v~~----~~~~~~g~g~skk~Ak~~AA~~AL~~L~~~~ 1393 (1396)
++.|+++|+..... .|.|.....++ .|.|+|.+=. +.+. ...-.|++.||+.||-.|+++|.+.|
T Consensus 2 i~lL~~yC~~Lp~d~~~~~~P~~~~~~~~~--~~~c~v~LP~~~pi~~i~-g~~~~sk~~AK~sAAf~Ac~~L~~~g 75 (90)
T PF03368_consen 2 ISLLNRYCSTLPSDSFTNLKPEFEIEKIGS--GFICTVILPINSPIRSIE-GPPMRSKKLAKRSAAFEACKKLHEAG 75 (90)
T ss_dssp HHHHHHHHTTSSS-TT--SS-EEEEEE--G---EEEEEE--TT-SS--EE-EE--SSHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHhcCCCCCCccCCceEEEEEcCC--cEEEEEECCCCCCCCeEE-ccccccHHHHHHHHHHHHHHHHHHcC
Confidence 45688888864321 22333333332 5788887632 2222 23567999999999999999998765
No 457
>PRK05973 replicative DNA helicase; Provisional
Probab=78.69 E-value=3 Score=46.12 Aligned_cols=48 Identities=19% Similarity=0.210 Sum_probs=32.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
++|.+++|+|||..++.++...+. .+.+++|+.--- =..|..+.+..+
T Consensus 67 ~LIaG~PG~GKT~lalqfa~~~a~-----~Ge~vlyfSlEe-s~~~i~~R~~s~ 114 (237)
T PRK05973 67 VLLGARPGHGKTLLGLELAVEAMK-----SGRTGVFFTLEY-TEQDVRDRLRAL 114 (237)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHh-----cCCeEEEEEEeC-CHHHHHHHHHHc
Confidence 779999999999999877765543 356677776442 235555555543
No 458
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=78.59 E-value=6.1 Score=44.06 Aligned_cols=57 Identities=11% Similarity=0.112 Sum_probs=37.7
Q ss_pred HHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHH
Q 000607 28 EALENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKM 90 (1396)
Q Consensus 28 e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~ 90 (1396)
+.++.++.| .++|.+++|+|||..+.-++...+. .+.+++++.-. +-..|..+.+..
T Consensus 8 ~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~-----~ge~~lyvs~e-e~~~~i~~~~~~ 70 (237)
T TIGR03877 8 PGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQ-----MGEPGIYVALE-EHPVQVRRNMAQ 70 (237)
T ss_pred HhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHH-----cCCcEEEEEee-CCHHHHHHHHHH
Confidence 345666653 3889999999999998776654332 35668887743 455565555544
No 459
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=78.38 E-value=5.5 Score=44.04 Aligned_cols=57 Identities=19% Similarity=0.156 Sum_probs=36.0
Q ss_pred HHHHhcC------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 30 LENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 30 ~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
++..+.| .++|.+++|+|||..+.-.+...+... +.+++++.-. +-..+..+.++.+
T Consensus 8 LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~----ge~vlyvs~e-e~~~~l~~~~~s~ 70 (226)
T PF06745_consen 8 LDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNF----GEKVLYVSFE-EPPEELIENMKSF 70 (226)
T ss_dssp HHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHH----T--EEEEESS-S-HHHHHHHHHTT
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhc----CCcEEEEEec-CCHHHHHHHHHHc
Confidence 4555643 388999999999999887665544311 4568887754 4446666666643
No 460
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=78.31 E-value=2.6 Score=49.02 Aligned_cols=45 Identities=27% Similarity=0.216 Sum_probs=27.1
Q ss_pred HHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcc
Q 000607 29 ALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVV 79 (1396)
Q Consensus 29 ~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~ 79 (1396)
.+..+.+ ++++++++||||||...-.++..+ ++..+++.+-.+.+
T Consensus 136 ~l~~~v~~~~~ili~G~tGsGKTTll~al~~~~------~~~~~iv~ied~~E 182 (308)
T TIGR02788 136 FLRLAIASRKNIIISGGTGSGKTTFLKSLVDEI------PKDERIITIEDTRE 182 (308)
T ss_pred HHHHHhhCCCEEEEECCCCCCHHHHHHHHHccC------CccccEEEEcCccc
Confidence 3444444 389999999999998754444322 23344555544433
No 461
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=78.21 E-value=5.1 Score=53.03 Aligned_cols=85 Identities=12% Similarity=0.088 Sum_probs=65.0
Q ss_pred CCcEEEEEeCCcccHHHHHHHHHHhcC-CeEEEEeCCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCcccccee
Q 000607 67 SPFVAVFLVPKVVLVPQQAEAIKMHTD-LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIK 145 (1396)
Q Consensus 67 ~~k~vl~LvPt~~Lv~Q~~~~i~~~~~-~~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~ 145 (1396)
.+..+++|.|.++=..+.++.++...+ .++++.+|.|....-.....+-.-.++||+|||. .+ ..-+.+.+.+
T Consensus 802 RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g~~dVLv~TT-----II-EtGIDIPnAN 875 (1139)
T COG1197 802 RGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNGEYDVLVCTT-----II-ETGIDIPNAN 875 (1139)
T ss_pred cCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcCCCCEEEEee-----ee-ecCcCCCCCc
Confidence 466899999999999999999999875 7999999998754222211222224799999997 22 2346678899
Q ss_pred EEEEeccccccC
Q 000607 146 VLILDECHHARG 157 (1396)
Q Consensus 146 llI~DEaH~~~~ 157 (1396)
.||++-||++.=
T Consensus 876 TiIIe~AD~fGL 887 (1139)
T COG1197 876 TIIIERADKFGL 887 (1139)
T ss_pred eEEEeccccccH
Confidence 999999999873
No 462
>PF03796 DnaB_C: DnaB-like helicase C terminal domain; InterPro: IPR007694 The hexameric helicase DnaB unwinds the DNA duplex at the Escherichia coli chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis. ; GO: 0003678 DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1Q57_E 1E0K_D 1E0J_B 1CR2_A 1CR4_A 1CR1_A 1CR0_A 1MI8_A 2R6D_B 2R6C_C ....
Probab=78.20 E-value=7.5 Score=44.01 Aligned_cols=125 Identities=16% Similarity=0.188 Sum_probs=64.8
Q ss_pred HHHHHhcC----C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe-CC
Q 000607 29 ALENALKQ----N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW-GD 102 (1396)
Q Consensus 29 ~~~~~l~~----n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~-G~ 102 (1396)
.++.++.| + ++|++.||.|||..++-++..++. ..+..++|+..-..--.=..+.+....++....+. |.
T Consensus 8 ~LD~~lgG~~~g~L~vi~a~pg~GKT~~~l~ia~~~a~----~~~~~vly~SlEm~~~~l~~R~la~~s~v~~~~i~~g~ 83 (259)
T PF03796_consen 8 ALDRLLGGLRPGELTVIAARPGVGKTAFALQIALNAAL----NGGYPVLYFSLEMSEEELAARLLARLSGVPYNKIRSGD 83 (259)
T ss_dssp HHHHHHSSB-TT-EEEEEESTTSSHHHHHHHHHHHHHH----TTSSEEEEEESSS-HHHHHHHHHHHHHTSTHHHHHCCG
T ss_pred HHHHHhcCCCcCcEEEEEecccCCchHHHHHHHHHHHH----hcCCeEEEEcCCCCHHHHHHHHHHHhhcchhhhhhccc
Confidence 34555543 3 789999999999998887776654 12467888876432222233334444454333222 22
Q ss_pred CCcccCCcc-chHHhhccCcEEE-e----cHHHHHHhHhhcCccccceeEEEEeccccccC
Q 000607 103 MGVDFWDGA-TWKEEMSKHEVLV-M----TPQILLDGLRLSYFKLNMIKVLILDECHHARG 157 (1396)
Q Consensus 103 ~~~~~~~~~-~~~~~~~~~~ViV-~----T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~ 157 (1396)
...+.|..- .....+.+..+.| . |+..+.+.+..-......+++||+|=.|.+..
T Consensus 84 l~~~e~~~~~~~~~~l~~~~l~i~~~~~~~~~~i~~~i~~~~~~~~~~~~v~IDyl~ll~~ 144 (259)
T PF03796_consen 84 LSDEEFERLQAAAEKLSDLPLYIEDTPSLTIDDIESKIRRLKREGKKVDVVFIDYLQLLKS 144 (259)
T ss_dssp CHHHHHHHHHHHHHHHHTSEEEEEESSS-BHHHHHHHHHHHHHHSTTEEEEEEEEGGGSBT
T ss_pred cCHHHHHHHHHHHHHHhhCcEEEECCCCCCHHHHHHHHHHHHhhccCCCEEEechHHHhcC
Confidence 111111110 0111223444444 2 44455544432222225788999999888765
No 463
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.09 E-value=14 Score=45.86 Aligned_cols=22 Identities=36% Similarity=0.378 Sum_probs=18.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||.+|-.+.+.+
T Consensus 41 yLf~Gp~G~GKTtlAr~lAk~L 62 (486)
T PRK14953 41 YIFAGPRGTGKTTIARILAKVL 62 (486)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5789999999999987776654
No 464
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=77.88 E-value=4.1 Score=50.01 Aligned_cols=22 Identities=32% Similarity=0.347 Sum_probs=18.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+..+|-|+|||-+|=.+++.+
T Consensus 41 YlfsG~RGvGKTt~Ari~Akal 62 (515)
T COG2812 41 YLFSGPRGVGKTTIARILAKAL 62 (515)
T ss_pred hhhcCCCCcCchhHHHHHHHHh
Confidence 7799999999999987777655
No 465
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=77.83 E-value=8.8 Score=46.52 Aligned_cols=133 Identities=9% Similarity=-0.022 Sum_probs=69.0
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcc-cHHHHHHHHHHhc---CCeEEEEeCCCCcccCCccch
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVV-LVPQQAEAIKMHT---DLKVGKYWGDMGVDFWDGATW 113 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~-Lv~Q~~~~i~~~~---~~~v~~~~G~~~~~~~~~~~~ 113 (1396)
.++.+..|||||.+++..+...+ ...+++.+++++-++.. |.......+.... ++....-...... ..
T Consensus 4 ~i~~GgrgSGKS~~~~~~~~~~~--~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~~~~~~~~~~~------~i 75 (396)
T TIGR01547 4 IIAKGGRRSGKTFAIALKLVEKL--AINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGINYEFKKSKSSM------EI 75 (396)
T ss_pred EEEeCCCCcccHHHHHHHHHHHH--HhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCChhheeecCCcc------EE
Confidence 57899999999999886433222 22224567888888875 5444555555322 3321111111000 00
Q ss_pred HHhhc-cCcEEEecH-HHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCCCeEEEEeccCC
Q 000607 114 KEEMS-KHEVLVMTP-QILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNLPRIFGMTASPI 191 (1396)
Q Consensus 114 ~~~~~-~~~ViV~T~-q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~p~ilgLTATp~ 191 (1396)
. ... +..|++..- ..-.+ + .....+.++.+|||..+..+ .+..++.... . ...+..+.+|.+|.
T Consensus 76 ~-~~~~g~~i~f~g~~d~~~~-i----k~~~~~~~~~idEa~~~~~~-~~~~l~~rlr-----~--~~~~~~i~~t~NP~ 141 (396)
T TIGR01547 76 K-ILNTGKKFIFKGLNDKPNK-L----KSGAGIAIIWFEEASQLTFE-DIKELIPRLR-----E--TGGKKFIIFSSNPE 141 (396)
T ss_pred E-ecCCCeEEEeecccCChhH-h----hCcceeeeehhhhhhhcCHH-HHHHHHHHhh-----c--cCCccEEEEEcCcC
Confidence 0 011 344555443 11111 1 12234799999999998543 5555554321 1 11122578899996
Q ss_pred C
Q 000607 192 K 192 (1396)
Q Consensus 192 ~ 192 (1396)
.
T Consensus 142 ~ 142 (396)
T TIGR01547 142 S 142 (396)
T ss_pred C
Confidence 5
No 466
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=77.83 E-value=3 Score=44.53 Aligned_cols=32 Identities=28% Similarity=0.440 Sum_probs=22.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKV 78 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~ 78 (1396)
.++++|||+|||-.|+.+.+.. +. -+|....+
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~-------g~--pvI~~Dri 35 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKT-------GA--PVISLDRI 35 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH-----------EEEEE-SG
T ss_pred EEEECCCCCChhHHHHHHHHHh-------CC--CEEEecce
Confidence 4799999999999999888765 22 46666663
No 467
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=77.60 E-value=1.5 Score=49.05 Aligned_cols=22 Identities=27% Similarity=0.292 Sum_probs=17.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
++|.+|||||||.+-...|-++
T Consensus 128 ILVTGpTGSGKSTTlAamId~i 149 (353)
T COG2805 128 ILVTGPTGSGKSTTLAAMIDYI 149 (353)
T ss_pred EEEeCCCCCcHHHHHHHHHHHH
Confidence 8899999999987755556554
No 468
>PHA00012 I assembly protein
Probab=77.49 E-value=5.6 Score=45.40 Aligned_cols=21 Identities=33% Similarity=0.504 Sum_probs=17.0
Q ss_pred EEEEeCCCchHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRS 58 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~ 58 (1396)
-+|.+-.|+|||+.|+.-|..
T Consensus 4 ylITGkPGSGKSl~aV~~I~~ 24 (361)
T PHA00012 4 YVVTGKLGAGKTLVAVSRIQD 24 (361)
T ss_pred EEEecCCCCCchHHHHHHHHH
Confidence 468899999999999974443
No 469
>PRK09165 replicative DNA helicase; Provisional
Probab=77.47 E-value=9.1 Score=47.64 Aligned_cols=112 Identities=18% Similarity=0.160 Sum_probs=57.9
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcC----------CCCcEEEEEeCCcccHHHHHHHHH-HhcCCeEEEE-eCCCCc
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRK----------PSPFVAVFLVPKVVLVPQQAEAIK-MHTDLKVGKY-WGDMGV 105 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~----------~~~k~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~ 105 (1396)
+||++.||.|||..++-++...+..... ..++.++|+..- .=..|....+- ...++....+ .|...
T Consensus 220 ivIaarpg~GKT~~al~ia~~~a~~~~~~~~~~~~~~~~~g~~vl~fSlE-Ms~~ql~~R~la~~s~v~~~~i~~~~l~- 297 (497)
T PRK09165 220 IILAGRPSMGKTALATNIAFNAAKAYRREAQPDGSKKAVNGGVVGFFSLE-MSAEQLATRILSEQSEISSSKIRRGKIS- 297 (497)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhhcccccccccccccCCCeEEEEeCc-CCHHHHHHHHHHHhcCCCHHHHhcCCCC-
Confidence 7799999999999988877666543211 125667777644 33355555443 3344433222 23222
Q ss_pred ccCCccchHHh------hccCcEEEe-----cHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 106 DFWDGATWKEE------MSKHEVLVM-----TPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 106 ~~~~~~~~~~~------~~~~~ViV~-----T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
...|... +....+.|- |...+...++.- ..-..+++||+|=.|.+.
T Consensus 298 ----~~e~~~l~~a~~~l~~~~l~I~d~~~~ti~~i~~~ir~l-~~~~~~~lvvIDyLqli~ 354 (497)
T PRK09165 298 ----EEDFEKLVDASQELQKLPLYIDDTPALSISQLRARARRL-KRQHGLDLLVVDYLQLIR 354 (497)
T ss_pred ----HHHHHHHHHHHHHHhcCCeEEeCCCCCCHHHHHHHHHHH-HHhcCCCEEEEcchHhcc
Confidence 2334332 223344442 344444333211 111347788888766553
No 470
>PRK10689 transcription-repair coupling factor; Provisional
Probab=77.26 E-value=6.7 Score=53.65 Aligned_cols=79 Identities=15% Similarity=0.277 Sum_probs=62.1
Q ss_pred CCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-ccccccCC
Q 000607 386 EDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-ILEEGLDV 464 (1396)
Q Consensus 386 ~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-vleeGiDI 464 (1396)
.+.+++|.|+++.-|...+..+++.... .++++..++|.. +.++|.++++..++|..+|+|+|. .+..++.+
T Consensus 648 ~g~qvlvLvPT~eLA~Q~~~~f~~~~~~-~~v~i~~l~g~~------s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v~~ 720 (1147)
T PRK10689 648 NHKQVAVLVPTTLLAQQHYDNFRDRFAN-WPVRIEMLSRFR------SAKEQTQILAEAAEGKIDILIGTHKLLQSDVKW 720 (1147)
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHhhcc-CCceEEEEECCC------CHHHHHHHHHHHHhCCCCEEEECHHHHhCCCCH
Confidence 4678999999999999999888864322 246777888874 788999999999999999999995 44555666
Q ss_pred CcccEEE
Q 000607 465 QSCNLVI 471 (1396)
Q Consensus 465 p~~~lVI 471 (1396)
.++.+||
T Consensus 721 ~~L~lLV 727 (1147)
T PRK10689 721 KDLGLLI 727 (1147)
T ss_pred hhCCEEE
Confidence 6666666
No 471
>TIGR00665 DnaB replicative DNA helicase. This model describes the helicase DnaB, a homohexameric protein required for DNA replication. The homohexamer can form a ring around a single strand of DNA near a replication fork. An intein of 400 residues is found at a conserved location in DnaB of Synechocystis PCC6803, Rhodothermus marinus (both experimentally confirmed), and Mycobacterium tuberculosis. The intein removes itself by a self-splicing reaction. The seed alignment contains inteins so that the model built from the seed alignment will model a low cost at common intein insertion sites.
Probab=77.17 E-value=8.9 Score=47.10 Aligned_cols=46 Identities=20% Similarity=0.156 Sum_probs=30.2
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
++|.+++|+|||..++-++.+.+. ..+..++|+..- .=..|....+
T Consensus 198 ~vi~g~pg~GKT~~~l~~a~~~a~----~~g~~vl~~SlE-m~~~~i~~R~ 243 (434)
T TIGR00665 198 IILAARPSMGKTAFALNIAENAAI----KEGKPVAFFSLE-MSAEQLAMRM 243 (434)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHH----hCCCeEEEEeCc-CCHHHHHHHH
Confidence 679999999999998877765543 124567777654 2334444433
No 472
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=76.92 E-value=12 Score=47.38 Aligned_cols=22 Identities=32% Similarity=0.202 Sum_probs=19.3
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|-.+.+.+
T Consensus 41 yLf~Gp~G~GKTt~Ar~lAk~L 62 (563)
T PRK06647 41 YIFSGPRGVGKTSSARAFARCL 62 (563)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 7899999999999988777765
No 473
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=76.85 E-value=6.3 Score=45.09 Aligned_cols=93 Identities=18% Similarity=0.136 Sum_probs=53.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhc---------CCeEEEEeCCCCcccC
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---------DLKVGKYWGDMGVDFW 108 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~---------~~~v~~~~G~~~~~~~ 108 (1396)
++|++||++|||-.|+.+.+.+ ++ -+|-+.+ .|.++.+.--+ +.+-..+.=-...+.+
T Consensus 6 i~I~GPTAsGKT~lai~LAk~~-------~~--eIIs~DS----mQvYr~mdIGTAKps~~e~~~vpHhliDi~~p~e~y 72 (308)
T COG0324 6 IVIAGPTASGKTALAIALAKRL-------GG--EIISLDS----MQVYRGLDIGTAKPSLEELAGVPHHLIDIRDPTESY 72 (308)
T ss_pred EEEECCCCcCHHHHHHHHHHHc-------CC--cEEecch----hhhcCCCcccCCCCCHHHHcCCCEEEecccCccccc
Confidence 6799999999999999888765 23 3555555 34444433211 1111111111112233
Q ss_pred CccchHHhhc----------cCcEEEecHHHHHHhHhhcCccccc
Q 000607 109 DGATWKEEMS----------KHEVLVMTPQILLDGLRLSYFKLNM 143 (1396)
Q Consensus 109 ~~~~~~~~~~----------~~~ViV~T~q~L~~~l~~~~~~l~~ 143 (1396)
+...|..... ..-|+|+-.+...+.|-++...+..
T Consensus 73 sa~~f~~~a~~~i~~i~~rgk~pIlVGGTglY~~aL~~g~~~~p~ 117 (308)
T COG0324 73 SAAEFQRDALAAIDDILARGKLPILVGGTGLYLKALLEGLSLLPE 117 (308)
T ss_pred cHHHHHHHHHHHHHHHHhCCCCcEEEccHHHHHHHHHcCCCCCCC
Confidence 3333433221 4789999998888888877654443
No 474
>PRK13764 ATPase; Provisional
Probab=76.56 E-value=4 Score=51.31 Aligned_cols=48 Identities=19% Similarity=0.148 Sum_probs=32.2
Q ss_pred HHHHHHhc--CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 28 EALENALK--QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 28 e~~~~~l~--~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
++++.+.. +|++++++||||||..+..++..+. ..++.++.+-..+++
T Consensus 248 ~l~~~l~~~~~~ILIsG~TGSGKTTll~AL~~~i~-----~~~riV~TiEDp~El 297 (602)
T PRK13764 248 KLKERLEERAEGILIAGAPGAGKSTFAQALAEFYA-----DMGKIVKTMESPRDL 297 (602)
T ss_pred HHHHHHHhcCCEEEEECCCCCCHHHHHHHHHHHHh-----hCCCEEEEECCCccc
Confidence 34454444 4899999999999988766666552 234555566666566
No 475
>PF05729 NACHT: NACHT domain
Probab=76.40 E-value=10 Score=39.07 Aligned_cols=24 Identities=29% Similarity=0.242 Sum_probs=19.4
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAY 61 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~ 61 (1396)
++|.++.|+|||.++..++..+..
T Consensus 3 l~I~G~~G~GKStll~~~~~~~~~ 26 (166)
T PF05729_consen 3 LWISGEPGSGKSTLLRKLAQQLAE 26 (166)
T ss_pred EEEECCCCCChHHHHHHHHHHHHh
Confidence 579999999999988777766544
No 476
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=76.30 E-value=8.5 Score=48.15 Aligned_cols=21 Identities=29% Similarity=0.425 Sum_probs=17.7
Q ss_pred CEEEEeCCCchHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLR 57 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~ 57 (1396)
++++++|+|+|||..+-.+..
T Consensus 90 giLL~GppGtGKT~la~alA~ 110 (495)
T TIGR01241 90 GVLLVGPPGTGKTLLAKAVAG 110 (495)
T ss_pred cEEEECCCCCCHHHHHHHHHH
Confidence 699999999999998765544
No 477
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=76.18 E-value=11 Score=44.19 Aligned_cols=38 Identities=13% Similarity=0.079 Sum_probs=28.3
Q ss_pred chHHHHHHHHHHhc----C----CEEEEeCCCchHHHHHHHHHHHH
Q 000607 22 ARNYQLEALENALK----Q----NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~----~----n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+|||...++...+ + -.++.+|.|+||+..|..+.+.+
T Consensus 3 ~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 3 WYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 45677777666553 2 27799999999999988777655
No 478
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=76.18 E-value=11 Score=44.90 Aligned_cols=22 Identities=27% Similarity=0.342 Sum_probs=18.7
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.++++|.|+|||..|-.+.+.+
T Consensus 39 ~Ll~G~~G~GKt~~a~~la~~l 60 (355)
T TIGR02397 39 YLFSGPRGTGKTSIARIFAKAL 60 (355)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6899999999999987776654
No 479
>PRK08006 replicative DNA helicase; Provisional
Probab=76.11 E-value=8.3 Score=47.55 Aligned_cols=114 Identities=16% Similarity=0.157 Sum_probs=57.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHH-HhcCCeEEEE-eCCCCcccCCccc-hH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIK-MHTDLKVGKY-WGDMGVDFWDGAT-WK 114 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~-~~~~~~v~~~-~G~~~~~~~~~~~-~~ 114 (1396)
+||++.+|.|||..|+-++...+.. .++.++|...- .=..|....+- ...++....+ .|..+.+.|..-. ..
T Consensus 227 iiIaarPgmGKTafalnia~~~a~~----~g~~V~~fSlE-M~~~ql~~Rlla~~~~v~~~~i~~~~l~~~e~~~~~~a~ 301 (471)
T PRK08006 227 IIVAARPSMGKTTFAMNLCENAAML----QDKPVLIFSLE-MPGEQIMMRMLASLSRVDQTRIRTGQLDDEDWARISGTM 301 (471)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHHHHhcCCCHHHhhcCCCCHHHHHHHHHHH
Confidence 7799999999999988777665431 35567777654 22345554443 3344433322 2333333332211 11
Q ss_pred Hhh-ccCcEEEe-----cHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 115 EEM-SKHEVLVM-----TPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 115 ~~~-~~~~ViV~-----T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
..+ .+..+.|- |...+....++-......+++||+|=.|.+.
T Consensus 302 ~~~~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 349 (471)
T PRK08006 302 GILLEKRNMYIDDSSGLTPTEVRSRARRIFREHGGLSLIMIDYLQLMR 349 (471)
T ss_pred HHHHhcCCEEEECCCCCCHHHHHHHHHHHHHhcCCCCEEEEccHHHcc
Confidence 112 34445543 4444433322111111257888888766553
No 480
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=76.05 E-value=11 Score=47.08 Aligned_cols=90 Identities=19% Similarity=0.314 Sum_probs=73.1
Q ss_pred HHHHHHhhhcCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEE
Q 000607 374 CLIESLLEYRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIV 453 (1396)
Q Consensus 374 ~L~~~L~~~~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLV 453 (1396)
+++..+..+ ..+.++...++|---|+.-+.-+.+..+. -++++..++|. +..++|+++++...+|+++++|
T Consensus 300 A~laml~ai--~~G~Q~ALMAPTEILA~QH~~~~~~~l~~-~~i~V~lLtG~------~kgk~r~~~l~~l~~G~~~ivV 370 (677)
T COG1200 300 ALLAMLAAI--EAGYQAALMAPTEILAEQHYESLRKWLEP-LGIRVALLTGS------LKGKARKEILEQLASGEIDIVV 370 (677)
T ss_pred HHHHHHHHH--HcCCeeEEeccHHHHHHHHHHHHHHHhhh-cCCeEEEeecc------cchhHHHHHHHHHhCCCCCEEE
Confidence 444444443 47889999999988887777776665433 37999999998 5889999999999999999999
Q ss_pred Eecc-cccccCCCcccEEEE
Q 000607 454 ATSI-LEEGLDVQSCNLVIM 472 (1396)
Q Consensus 454 aTsv-leeGiDIp~~~lVI~ 472 (1396)
.|-+ ..+.+++.+.-+||.
T Consensus 371 GTHALiQd~V~F~~LgLVIi 390 (677)
T COG1200 371 GTHALIQDKVEFHNLGLVII 390 (677)
T ss_pred EcchhhhcceeecceeEEEE
Confidence 9965 589999999999984
No 481
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=75.91 E-value=13 Score=41.36 Aligned_cols=49 Identities=29% Similarity=0.255 Sum_probs=29.0
Q ss_pred HHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHHHh-cCCCCcEEEEEeCC
Q 000607 29 ALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAYLL-RKPSPFVAVFLVPK 77 (1396)
Q Consensus 29 ~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~~~-~~~~~k~vl~LvPt 77 (1396)
.++.++.| . +.+++++|+|||..+..++....... ....+..++++.--
T Consensus 7 ~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e 62 (235)
T cd01123 7 ALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTE 62 (235)
T ss_pred hhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCC
Confidence 35556653 2 67999999999999877654321100 00113567777644
No 482
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=75.69 E-value=2.8 Score=41.05 Aligned_cols=22 Identities=32% Similarity=0.332 Sum_probs=18.1
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
++|++++|||||.+|-.+...+
T Consensus 2 I~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHH
Confidence 5799999999999987666544
No 483
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=75.61 E-value=5 Score=47.83 Aligned_cols=49 Identities=18% Similarity=0.223 Sum_probs=33.1
Q ss_pred cceeEEEEeccccccC-----CCcHH-HHHHHHHHhhccCCCCCCCeEEEEeccC
Q 000607 142 NMIKVLILDECHHARG-----KHQYA-CIMTEFYHRLLETGDSNLPRIFGMTASP 190 (1396)
Q Consensus 142 ~~i~llI~DEaH~~~~-----~~~~~-~im~~f~~~~~~~~~~~~p~ilgLTATp 190 (1396)
.+.+++++||+|.+.. .|.+. +++.+|.....-......++|+.+.||=
T Consensus 244 ~qPsvifidEidslls~Rs~~e~e~srr~ktefLiq~~~~~s~~~drvlvigaTN 298 (428)
T KOG0740|consen 244 LQPSVIFIDEIDSLLSKRSDNEHESSRRLKTEFLLQFDGKNSAPDDRVLVIGATN 298 (428)
T ss_pred cCCeEEEechhHHHHhhcCCcccccchhhhhHHHhhhccccCCCCCeEEEEecCC
Confidence 4678889999998873 35555 7778887554222233456888888884
No 484
>PF01935 DUF87: Domain of unknown function DUF87; InterPro: IPR002789 The function of this domain is unknown. It contains several conserved aspartates and histidines that could be metal ligands.
Probab=75.59 E-value=4.3 Score=44.97 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=30.8
Q ss_pred HHHhcCCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCC
Q 000607 31 ENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPK 77 (1396)
Q Consensus 31 ~~~l~~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt 77 (1396)
+....+.+.|.+-||||||..+..++.++.. ..+..++++=|.
T Consensus 19 ~~l~~~H~~I~G~TGsGKS~~~~~ll~~l~~----~~~~~~ii~D~~ 61 (229)
T PF01935_consen 19 NKLFNRHIAIFGTTGSGKSNTVKVLLEELLK----KKGAKVIIFDPH 61 (229)
T ss_pred HHhccceEEEECCCCCCHHHHHHHHHHHHHh----cCCCCEEEEcCC
Confidence 3455678999999999999998888887753 123345555554
No 485
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=75.56 E-value=11 Score=43.78 Aligned_cols=52 Identities=21% Similarity=0.115 Sum_probs=31.4
Q ss_pred HHHHHhcC-----C-EEEEeCCCchHHHHHHHHHHHHHH-HhcCCCCcEEEEEeCCccc
Q 000607 29 ALENALKQ-----N-TIVFLETGSGKTLIAIMLLRSYAY-LLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 29 ~~~~~l~~-----n-~Iv~~~TGsGKT~iailli~~l~~-~~~~~~~k~vl~LvPt~~L 80 (1396)
.++.++.| . +.|+++.|+|||..+..++....- ......+.+++|+----.+
T Consensus 84 ~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 84 ALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred HHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 46667764 2 569999999999998765432210 0001234568888755433
No 486
>PRK06904 replicative DNA helicase; Validated
Probab=75.42 E-value=12 Score=46.27 Aligned_cols=114 Identities=18% Similarity=0.185 Sum_probs=58.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH-HHhcCCeEEEE-eC-CCCcccCCccc-h
Q 000607 38 TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI-KMHTDLKVGKY-WG-DMGVDFWDGAT-W 113 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i-~~~~~~~v~~~-~G-~~~~~~~~~~~-~ 113 (1396)
+||++.||.|||..++-++...+.. .++.++|...- .=..|....+ ....++....+ .| ..+.+.|..-. .
T Consensus 224 iiIaarPg~GKTafalnia~~~a~~----~g~~Vl~fSlE-Ms~~ql~~Rlla~~s~v~~~~i~~g~~l~~~e~~~~~~a 298 (472)
T PRK06904 224 IIVAARPSMGKTTFAMNLCENAAMA----SEKPVLVFSLE-MPAEQIMMRMLASLSRVDQTKIRTGQNLDQQDWAKISST 298 (472)
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHh----cCCeEEEEecc-CCHHHHHHHHHHhhCCCCHHHhccCCCCCHHHHHHHHHH
Confidence 7789999999999887666655421 35567777654 3345555544 34444443332 33 23333332211 1
Q ss_pred HHhh-ccCcEEE-----ecHHHHHHhHhhcCccccceeEEEEecccccc
Q 000607 114 KEEM-SKHEVLV-----MTPQILLDGLRLSYFKLNMIKVLILDECHHAR 156 (1396)
Q Consensus 114 ~~~~-~~~~ViV-----~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~ 156 (1396)
...+ ....+.| .|...+....++-......+++||+|=.|.+.
T Consensus 299 ~~~l~~~~~l~I~d~~~~t~~~i~~~~r~~~~~~~~~~lvvIDYLqli~ 347 (472)
T PRK06904 299 VGMFKQKPNLYIDDSSGLTPTELRSRARRVYRENGGLSLIMVDYLQLMR 347 (472)
T ss_pred HHHHhcCCCEEEECCCCCCHHHHHHHHHHHHHhCCCCCEEEEecHHhcC
Confidence 1122 1344555 34544443332111111257889999666553
No 487
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=75.34 E-value=5.5 Score=47.03 Aligned_cols=23 Identities=17% Similarity=0.271 Sum_probs=18.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
..+|.+|.|+|||.++-.+...+
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHH
Confidence 79999999999998766555444
No 488
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=75.30 E-value=8.9 Score=47.09 Aligned_cols=22 Identities=23% Similarity=0.303 Sum_probs=19.5
Q ss_pred EEEEeCCCchHHHHHHHHHHHH
Q 000607 38 TIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 38 ~Iv~~~TGsGKT~iailli~~l 59 (1396)
.|+++|.|+|||.+|..+++.+
T Consensus 42 ~Lf~Gp~G~GKtt~A~~lAk~l 63 (451)
T PRK06305 42 YLFSGIRGTGKTTLARIFAKAL 63 (451)
T ss_pred EEEEcCCCCCHHHHHHHHHHHh
Confidence 7899999999999998877765
No 489
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=75.18 E-value=4.9 Score=47.61 Aligned_cols=23 Identities=13% Similarity=0.284 Sum_probs=18.3
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
.+.|++|+|+|||.++.++.+.+
T Consensus 170 ~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 170 RGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred EEEEECCCCCChhHHHHHHHHhh
Confidence 58899999999998776655543
No 490
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=75.10 E-value=7.2 Score=51.58 Aligned_cols=115 Identities=15% Similarity=0.128 Sum_probs=82.8
Q ss_pred CccHHHHHHHHHHhhh-cCCCCeeEEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHh
Q 000607 367 LLTEKIVCLIESLLEY-RGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFR 445 (1396)
Q Consensus 367 ~~s~Kv~~L~~~L~~~-~~~~~~k~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr 445 (1396)
+..+|+......+... ....-.++|||+..-..-+++...+.- .+++....-++ ++-...+..|+
T Consensus 1200 dfg~kI~~v~~~il~iK~k~~qekvIvfsqws~~ldV~e~~~~~-----N~I~~~~~~~t---------~d~~dc~~~fk 1265 (1394)
T KOG0298|consen 1200 DFGTKIDSVVIAILYIKFKNEQEKVIVFSQWSVVLDVKELRYLM-----NLIKKQLDGET---------EDFDDCIICFK 1265 (1394)
T ss_pred hhccCchhHHHHHHHHhccCcCceEEEEEehHHHHHHHHHHHHh-----hhhHhhhccCC---------cchhhhhhhcc
Confidence 3455555553333321 134568999999998888888877663 24444433222 23467788888
Q ss_pred cCCeeEEEEecccccccCCCcccEEEEeCCCCcHHHHHHhhhcccCCCCcE
Q 000607 446 RGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDY 496 (1396)
Q Consensus 446 ~g~~nvLVaTsvleeGiDIp~~~lVI~fD~p~s~~~yiQr~GRA~R~gs~~ 496 (1396)
+ ---+|+=++..+-|+|+-.+.+|+.-++-.|+..-.|.+||..|.|++-
T Consensus 1266 ~-I~clll~~~~~~~GLNL~eA~Hvfl~ePiLN~~~E~QAigRvhRiGQ~~ 1315 (1394)
T KOG0298|consen 1266 S-IDCLLLFVSKGSKGLNLIEATHVFLVEPILNPGDEAQAIGRVHRIGQKR 1315 (1394)
T ss_pred c-ceEEEEEeccCcccccHHhhhhhheeccccCchHHHhhhhhhhhccccc
Confidence 7 2335667899999999999999999999999999999999999999743
No 491
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=74.94 E-value=4.6 Score=49.95 Aligned_cols=54 Identities=20% Similarity=0.146 Sum_probs=35.9
Q ss_pred chHHHHHHHHHHhcC--C-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 22 ARNYQLEALENALKQ--N-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~--n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
..+-|.+.+..+... + +++++|||||||...-.++..+ . ..++.++-+-..++.
T Consensus 226 ~~~~~~~~l~~~~~~~~GlilitGptGSGKTTtL~a~L~~l----~-~~~~~iiTiEDpvE~ 282 (486)
T TIGR02533 226 MSPELLSRFERLIRRPHGIILVTGPTGSGKTTTLYAALSRL----N-TPERNILTVEDPVEY 282 (486)
T ss_pred CCHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHhcc----C-CCCCcEEEEcCCeee
Confidence 467788888887764 3 7799999999998865444433 1 234456655555443
No 492
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=74.72 E-value=4.2 Score=40.93 Aligned_cols=23 Identities=26% Similarity=0.277 Sum_probs=18.1
Q ss_pred CEEEEeCCCchHHHHHHHHHHHH
Q 000607 37 NTIVFLETGSGKTLIAIMLLRSY 59 (1396)
Q Consensus 37 n~Iv~~~TGsGKT~iailli~~l 59 (1396)
++|+.+|+|+|||..+-.+...+
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHh
Confidence 47999999999999876555433
No 493
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=74.47 E-value=11 Score=43.50 Aligned_cols=55 Identities=25% Similarity=0.348 Sum_probs=37.5
Q ss_pred HHHHHhc------CCEE-EEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHH
Q 000607 29 ALENALK------QNTI-VFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAI 88 (1396)
Q Consensus 29 ~~~~~l~------~n~I-v~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i 88 (1396)
+++.++. +.++ +++|.|+|||..++.++..... .+..++|+-+-.+|-..+++.+
T Consensus 40 ~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~-----~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 40 ALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQK-----QGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp HHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHH-----TT-EEEEEESSS---HHHHHHT
T ss_pred ccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhc-----ccceeEEecCcccchhhHHHhc
Confidence 5667775 2344 9999999999999887776533 3677889888888866666544
No 494
>KOG0442 consensus Structure-specific endonuclease ERCC1-XPF, catalytic component XPF/ERCC4 [Replication, recombination and repair]
Probab=74.27 E-value=2.8e+02 Score=36.08 Aligned_cols=152 Identities=14% Similarity=0.173 Sum_probs=94.8
Q ss_pred chHHHHHHHHHHhcCC-EEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHhcCCeEEEEe
Q 000607 22 ARNYQLEALENALKQN-TIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDLKVGKYW 100 (1396)
Q Consensus 22 ~r~yQ~e~~~~~l~~n-~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~~~~~v~~~~ 100 (1396)
+=+||++++...+..+ +++++..|.|=--+.+-.+..+ .+++-.++ ++++.+.-++++.-..+ ...+....
T Consensus 14 lL~Ye~qv~~~ll~~d~~L~V~a~GLsl~~l~~~~l~~~-----s~~~sL~L-vLN~~~~ee~~f~s~lk--~~~~t~~~ 85 (892)
T KOG0442|consen 14 LLEYEQQVLLELLEADGNLLVLAPGLSLLRLVAELLILF-----SPPGSLVL-VLNTQEAEEEYFSSKLK--EPLVTEDP 85 (892)
T ss_pred cchhHHHHHHhhhcccCceEEecCCcCHHHHHHHHHHHh-----CCccceEE-EecCchhhHHHHHHhcC--cCCCccCh
Confidence 6789999999999654 4888888988655544333322 23333333 34555554543222211 11111112
Q ss_pred CCCCcccCCccchHHhhccCcEEEecHHHHHHhHhhcCccccceeEEEEeccccccCCCcHHHHHHHHHHhhccCCCCCC
Q 000607 101 GDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLETGDSNL 180 (1396)
Q Consensus 101 G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~l~~i~llI~DEaH~~~~~~~~~~im~~f~~~~~~~~~~~~ 180 (1396)
.+..++ .....--..-|.++|.-+|.-.+..+.+..+.+.-|+++-||.+.....-.-|++-|... ++.
T Consensus 86 s~ls~~-----~R~~~Yl~GGv~fiSsRiLvvDlLt~rIp~~ki~gI~vl~Ah~i~ets~eaFIlRl~R~k------nk~ 154 (892)
T KOG0442|consen 86 SELSVN-----KRRSKYLEGGVFFISSRILVVDLLTGRIPTEKITGILVLNAHTISETSQEAFILRLYRSK------NKT 154 (892)
T ss_pred hhcchh-----hhHHhhhcCCeEEeeeceeeeehhcCccchhHcceEEEechhhhhhcchhHHHHHHHHHh------cCC
Confidence 222222 122223356799999999998778888999999999999999999988888888877632 233
Q ss_pred CeEEEEeccCCC
Q 000607 181 PRIFGMTASPIK 192 (1396)
Q Consensus 181 p~ilgLTATp~~ 192 (1396)
-.|=++|-.|..
T Consensus 155 gfIkAFsd~P~s 166 (892)
T KOG0442|consen 155 GFIKAFSDSPES 166 (892)
T ss_pred cceeccccCchh
Confidence 345566666644
No 495
>KOG1041 consensus Translation initiation factor 2C (eIF-2C) and related proteins [Translation, ribosomal structure and biogenesis]
Probab=74.02 E-value=4.1 Score=53.98 Aligned_cols=78 Identities=24% Similarity=0.324 Sum_probs=56.3
Q ss_pred ccCcEEecCc--CCeeEEEEeecCCCCCCCcCccCC--CCcccHHHHHHHHhCceeccCCCceEeeecccccccccchhh
Q 000607 834 IHNSLVCTPH--NGQIYCITGVLGHLNANSLFTRNN--GSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCR 909 (1396)
Q Consensus 834 ~~~~~V~~~~--~~~~Y~v~~i~~dl~p~s~~~~~~--~~~~ty~~y~~~k~~~~i~~~~QPll~~~~~~~~~n~l~~~~ 909 (1396)
+++.-|...| .++.|.|.++.+.-.-+..|+..+ +...|-.+||+++|++.+.+++-|.|.+.+-.+
T Consensus 280 lkgL~v~~~h~~~~r~~~i~~l~~~~a~~~~F~l~~~~~~~~tV~~Yf~~ky~~~Lkyp~LPcv~v~~~~~--------- 350 (876)
T KOG1041|consen 280 LKGLKVYVTHGKRKRKIKIMGLSKKPAKNTTFELKDKKGREITVADYFLEKYNITLKYPDLPCVVVKRPKR--------- 350 (876)
T ss_pred hhCcEEEEecccCcceEEEecccCCcccCceeeccCCCceEEeHHHHHHHhcCccccCCCCccEeecCCCC---------
Confidence 4444444455 446899999887666666777544 456789999999999999999999998872211
Q ss_pred hcccCCCCcceeeeccccccc
Q 000607 910 QQKQKEPSKISFELPPELCRI 930 (1396)
Q Consensus 910 ~~~~~~~~~~~~~L~pelC~~ 930 (1396)
. .++|.|+|.+
T Consensus 351 --------~--~~~PmElc~i 361 (876)
T KOG1041|consen 351 --------E--NFYPMELCNI 361 (876)
T ss_pred --------C--cccchhheec
Confidence 1 3589999965
No 496
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=74.00 E-value=11 Score=47.15 Aligned_cols=98 Identities=23% Similarity=0.335 Sum_probs=67.6
Q ss_pred EEEEechHHHHHHHHHHHHhhcCCCCCceeeEEecCCCCcCCCCHHHHHHHHHHHhcCCeeEEEEec-----ccccc-cC
Q 000607 390 CIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSGIQCQSRKKQNEIVEEFRRGLVNVIVATS-----ILEEG-LD 463 (1396)
Q Consensus 390 ~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~l~G~~~~~~~ms~~~r~~~l~~Fr~g~~nvLVaTs-----vleeG-iD 463 (1396)
+||+++||+-|..+++.+..+.....++++..++|.. +...|.. +++.| .+|||||+ .+++| +|
T Consensus 102 aLil~PTRELA~Qi~~~~~~~~~~~~~~~~~~i~GG~------~~~~q~~---~l~~~-~~ivVaTPGRllD~i~~~~l~ 171 (513)
T COG0513 102 ALILAPTRELAVQIAEELRKLGKNLGGLRVAVVYGGV------SIRKQIE---ALKRG-VDIVVATPGRLLDLIKRGKLD 171 (513)
T ss_pred eEEECCCHHHHHHHHHHHHHHHhhcCCccEEEEECCC------CHHHHHH---HHhcC-CCEEEECccHHHHHHHcCCcc
Confidence 9999999999999999999874331267888999874 6555554 44456 99999996 56676 89
Q ss_pred CCcccEEEE------eCCCCcHHHHHHhhhcccCCCCcEEEE
Q 000607 464 VQSCNLVIM------FDPSRTVCSFIQSRGRARMQNSDYLLM 499 (1396)
Q Consensus 464 Ip~~~lVI~------fD~p~s~~~yiQr~GRA~R~gs~~i~l 499 (1396)
+..+..+|. +|+ ....-+..+.+.-...-...+|
T Consensus 172 l~~v~~lVlDEADrmLd~--Gf~~~i~~I~~~~p~~~qtllf 211 (513)
T COG0513 172 LSGVETLVLDEADRMLDM--GFIDDIEKILKALPPDRQTLLF 211 (513)
T ss_pred hhhcCEEEeccHhhhhcC--CCHHHHHHHHHhCCcccEEEEE
Confidence 999998883 455 3444444444443333333333
No 497
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=73.99 E-value=18 Score=44.95 Aligned_cols=59 Identities=17% Similarity=0.097 Sum_probs=41.8
Q ss_pred HHHHHHHhcC------CEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 27 LEALENALKQ------NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 27 ~e~~~~~l~~------n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
.+.++..+.| -++|.+|+|+|||..++..+...+. .+.+++++.-- +-..|.....+.+
T Consensus 249 i~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~-----~ge~~~y~s~e-Es~~~i~~~~~~l 313 (484)
T TIGR02655 249 VVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACA-----NKERAILFAYE-ESRAQLLRNAYSW 313 (484)
T ss_pred hHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHH-----CCCeEEEEEee-CCHHHHHHHHHHc
Confidence 3567777764 2889999999999998877765543 35568887743 5557777666653
No 498
>COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms]
Probab=73.39 E-value=10 Score=48.39 Aligned_cols=28 Identities=29% Similarity=0.242 Sum_probs=21.7
Q ss_pred cceeEEEEeccccccCCCcHHHHHHHHH
Q 000607 142 NMIKVLILDECHHARGKHQYACIMTEFY 169 (1396)
Q Consensus 142 ~~i~llI~DEaH~~~~~~~~~~im~~f~ 169 (1396)
.+-.++|+|||.-..+...-..|.+...
T Consensus 482 ~~~~ILILDEaTSalD~~tE~~I~~~l~ 509 (567)
T COG1132 482 RNPPILILDEATSALDTETEALIQDALK 509 (567)
T ss_pred cCCCEEEEeccccccCHHhHHHHHHHHH
Confidence 4558999999999998777677766554
No 499
>KOG1806 consensus DEAD box containing helicases [Replication, recombination and repair]
Probab=73.07 E-value=5.2 Score=51.41 Aligned_cols=65 Identities=22% Similarity=0.190 Sum_probs=51.1
Q ss_pred HHHHHHHHHHhc-CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCcccHHHHHHHHHHh
Q 000607 24 NYQLEALENALK-QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 24 ~yQ~e~~~~~l~-~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~Lv~Q~~~~i~~~ 91 (1396)
+-|.|++..... |.+.+++|+|+|||-+|+-++.-+.+ ..+..+++|++.++.-..|-.+.+.+.
T Consensus 741 ~~qveai~sg~qpgltmvvgppgtgktd~avqil~~lyh---n~p~qrTlivthsnqaln~lfeKi~~~ 806 (1320)
T KOG1806|consen 741 PTQVEAILSGMQPGLTMVVGPPGTGKTDVAVQILSVLYH---NSPNQRTLIVTHSNQALNQLFEKIMAL 806 (1320)
T ss_pred HHHHHHHHhcCCCCceeeecCCCCCCcchhhhhhhhhhh---cCCCcceEEEEecccchhHHHHHHHhc
Confidence 467777776666 47999999999999999987765543 346778999999988888887777653
No 500
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=72.97 E-value=4.8 Score=47.68 Aligned_cols=43 Identities=19% Similarity=0.152 Sum_probs=28.2
Q ss_pred CCEEEEeCCCchHHHHHHHHHHHHHHHhcCCCCcEEEEEeCCccc
Q 000607 36 QNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVL 80 (1396)
Q Consensus 36 ~n~Iv~~~TGsGKT~iailli~~l~~~~~~~~~k~vl~LvPt~~L 80 (1396)
+.++|++|||||||...-.++..+.. ..+.+++++.+-..+++
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i~~--~~~~~~~Ivt~EdpiE~ 177 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIRELAE--APDSHRKILTYEAPIEF 177 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHhh--cCCCCcEEEEeCCCceE
Confidence 46999999999999876655554422 11234566666666555
Done!