Query 000607
Match_columns 1396
No_of_seqs 516 out of 4413
Neff 8.7
Searched_HMMs 29240
Date Tue Mar 26 16:22:51 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000607.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_380-383//hhsearch_pdb/000607hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2qvw_A GLP_546_48378_50642; di 1.0 1 1 703.9 34.8 532 696-1319 18-755 (756)
2 2ykg_A Probable ATP-dependent 1.0 1 1 424.9 42.2 559 13-604 5-666 (696)
3 4gl2_A Interferon-induced heli 1.0 1 1 405.4 36.7 469 16-508 2-524 (699)
4 3tbk_A RIG-I helicase domain; 1.0 1 1 401.8 41.7 464 20-511 3-515 (555)
5 4a2p_A RIG-I, retinoic acid in 1.0 1 1 401.5 43.8 463 17-508 3-513 (556)
6 4a2w_A RIG-I, retinoic acid in 1.0 1 1 401.3 47.0 460 19-507 246-753 (936)
7 4a2q_A RIG-I, retinoic acid in 1.0 1 1 401.3 46.3 461 19-508 246-754 (797)
8 1wp9_A ATP-dependent RNA helic 1.0 1 1 364.4 42.3 449 19-521 7-492 (494)
9 3c4b_A Endoribonuclease dicer; 1.0 1 1 345.4 19.8 239 1149-1392 13-264 (265)
10 3n3w_A Ribonuclease III; nucle 1.0 1 1 343.8 9.1 220 1145-1391 22-247 (248)
No 1
>2qvw_A GLP_546_48378_50642; dicer, RNAI,pseudo-merohedral twin, hydrolase; 3.00A {Giardia intestinalis} PDB: 2ffl_A
Probab=1.00 E-value=1 Score=703.90 Aligned_cols=532 Identities=22% Similarity=0.284 Sum_probs=412.9
Q ss_pred CCEEEEEECCCCCCCCCCCCEEEEEECCEEEEEEE-ECCCC-CCCHHHHHHHHHHHHHHHHHHHCCC---CCCCHHHCCC
Q ss_conf 63188763475651123661237831884999973-05320-0299999999999999999973256---6420100024
Q 000607 696 ARNIVLAMRTELESEIKKVNFDLEVERGRLTVNLK-HLGRI-QLIPNQVLLCRRFQITLFRVIMDHN---LDKLNEILDG 770 (1396)
Q Consensus 696 ~~~~~l~~~~~lp~~~~~~~~~l~~~~~~~~v~~~-~~~~~-~~~~~~~~~~~~f~~~~f~~~~~~~---~~~~~~~~~~ 770 (1396)
+..+.|++.++||.. +.|+||.++|.+.|++. +++.+ .++.+|+..++.||.++|+.+++.. ..+.......
T Consensus 18 ~~~~~~l~~~~l~~~---~~f~~~~~~g~~~v~v~~~~~~~~~l~~~q~~~~~~Fq~~lf~~~l~~~~~~~~~~~~~~~~ 94 (756)
T 2qvw_A 18 PSHWLLLLDTHLGTL---PGFKVSAGRGLPAAEVYFEAGPRVSLSRTDATIVAVYQSILFQLLGPTFPASWTEIGATMPH 94 (756)
T ss_dssp EEEEEEEESSCCCSC---CCEEECSBTTBCCEEEECCBCCCCCCCHHHHHHHHHHHHHHHHHHCTTSCSCHHHHHHTCCG
T ss_pred CCEEEEEECCCCCCC---CCCEEECCCCCEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCHHHHHCCCCCCC
T ss_conf 510311243778888---98422557895568998623886566999999999999999998702332023303654332
Q ss_pred C------CCCCCCCC-EEEEECCCCC--CCCCEEEEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEC
Q ss_conf 5------44667877-0899318898--4482120020256778998878765433222012368986544666848863
Q 000607 771 F------ELRDNLEI-DYLLLPSTGQ--LIDWKTVATVLFPRDNGSKHNMNCSTMFNARIVHTKSGPLCTCKIHNSLVCT 841 (1396)
Q Consensus 771 ~------~~~~~~~~-~~l~~P~~~~--~idw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~ 841 (1396)
. ...+.... .||+||+... .|||..+........ ... .. + -...++....+.+.|++|++
T Consensus 95 ~~~~~~~~~~~~~~~~~Yll~Pl~~~~~~iDw~~v~~s~~~~~-~~~-~~--~-------~~~~d~~~~~~~l~g~vV~t 163 (756)
T 2qvw_A 95 NEYTFPRFISNPPQFATLAFLPLLSPTSPLDLRALMVTAQLMC-DAK-RL--S-------DEYTDYSTLSASLHGRMVAT 163 (756)
T ss_dssp GGSSSTTCCCCCSCCCCEEEEEESSTTCCCCSHHHHHHHHHHH-TCC-CG--G-------GC------CTTTSTTCEEEE
T ss_pred CCCCCCCCCCCCCCCCEEEEEECCCCCCCEEHHHHHHHHHHCC-CCC-CC--C-------CCCCCCHHHHHHHCCCEEEC
T ss_conf 1013421257786544389996789888422065332344203-567-88--5-------11034235688827988955
Q ss_pred CCCC-EEEEEEEECCCCCCCCCCCCCCCCCCCHHHHHHHHHCCEECCCCCCEEEEECCCCCCCCCCHHHHCCCCCCCCCE
Q ss_conf 7489-049998432899989967668887451998999883843135997427520255333331112110268997520
Q 000607 842 PHNG-QIYCITGVLGHLNANSLFTRNNGSVTTYKKHYEERYGIQLCFDREPLLNGRRIFHVQNYLSKCRQQKQKEPSKIS 920 (1396)
Q Consensus 842 ~~~~-~~Y~v~~v~~dl~p~S~~~~~~~~~~ty~~y~~~k~~~~i~~~~qPll~~~~~~~~~n~l~~~~~~~~~~~~~~~ 920 (1396)
+|++ +.|++.+|++|+||.|.|+.. +.+.||.+||+.+|++++.+++||||.++++++..|+..+..... +......
T Consensus 164 ~ynn~r~Y~i~~id~d~~P~S~F~~~-~~~~Ty~dYYk~ky~i~I~d~~QPLL~~~~~~~~~~~r~~~~~~~-~~~~~~~ 241 (756)
T 2qvw_A 164 PEISWSLYVVLGIDSTQTSLSYFTRA-NESITYMRYYATAHNIHLRAADLPLVAAVRLDDLKDHQIPAPGSW-DDLAPKL 241 (756)
T ss_dssp TTTTTEEEEEEEEEEEEETTSEEEET-TEEEEHHHHHHHTTCCCCSCTTSEEEEEEETTTTTTCCCCSTTC--CCSCSSC
T ss_pred CCCCCEEEEEEEECCCCCCCCCCCCC-CCCCCHHHHHHHHCCCCCCCCCCCEEEEEECCCCCCCCCCCCCCC-CCCCCCC
T ss_conf 88885389998764799988767889-998779999998739622469987288873233334345555554-5677653
Q ss_pred EEECCCCCCCCCCCCCHHHHH--HHHHHHHHHHHHHHHHHHHH-HHHHHHHCCCCCCCCCHHHHHHHHCCCCCCCC----
Q ss_conf 550633221013456399999--85102359999999999999-99998200355888897999998624586634----
Q 000607 921 FELPPELCRIIMAPISLSTFY--SFTFVPSIMHRLQSLLLAVN-LKNMLLDHCMQNVTIPTIKVLEAITTKKCQED---- 993 (1396)
Q Consensus 921 ~~L~pelC~~~~~~~~~~~~~--~~~~lPsi~~~~~~~l~a~~-l~~~l~~~~~~~~~~~~~~ll~AlT~~s~~~~---- 993 (1396)
++||||+|.+ +++|+++|+ .+.++|||+||||++++|.+ ++. .++....|+ ..+++|||++++.+.
T Consensus 242 v~L~PELC~v--t~Lp~sl~~~~~~~~lPsil~rie~ll~a~~al~~----~~p~~~~i~-~~~leAlT~~~~~~~g~~~ 314 (756)
T 2qvw_A 242 RFLPPELCLL--LPDEFDLIRVQALQFLPEIAKHICDIQNTICALDK----SFPDCGRIG-GERYFAITAGLRLDQGRGR 314 (756)
T ss_dssp EEECTTTCEE--CCTTSCTTHHHHHTTHHHHHHHHHHHHHHHHHHGG----GSCCCSCCH-HHHHHHHHHHHBCSCCBTT
T ss_pred EEECHHHHEE--ECCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----CCCCCCCCC-HHHHHHHHHHHHHHHCCCC
T ss_conf 0107788201--36863478887887718999999999999999985----288624467-8999987565412201343
Q ss_pred -----------------CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCHHHHHHHHHCCCCCCCCCC
Q ss_conf -----------------881246644446887899999998539899220069886402419999988966974431223
Q 000607 994 -----------------FHLESLETLGDSFLKYAASQQLFKTYQNNHEGLLSVKKERIISNAALCKLGCEQKLPGFIRTE 1056 (1396)
Q Consensus 994 -----------------~~~erLE~LGDs~Lk~~~s~~l~~~~p~~~eg~Ls~~r~~~v~N~~L~~~a~~~gL~~~i~~~ 1056 (1396)
.|||||||||||||++++|.+||.+||+.+||+||.+|+.+|||.+|+++|.++||++||+
T Consensus 315 ~~~~~~~AlTh~s~~~~~nnERLEfLGDavL~~~vs~~L~~~~P~~~eG~Ls~lRs~lVsn~~La~~A~~lgL~~~l~-- 392 (756)
T 2qvw_A 315 GLAGWRTPFGPFGVSHTDVFQRLELLGDAVLGFIVTARLLCLFPDASVGTLVELKMELVRNEALNYLVQTLGLPQLAE-- 392 (756)
T ss_dssp BSBTTEEECBGGGBCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHSHHHHHHHHHHTTCTTTCB--
T ss_pred CHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHC--
T ss_conf 203444414564556788727999999999999999999997899984389999999848158999999868078853--
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCHHHHHHHHHHHHHHHC-CCHHHHHHHHH-----------
Q ss_conf 457898557999999876676444678642224610115612467999999997605-98167998774-----------
Q 000607 1057 SFDPKMWIIPGDNSGSYELNDDSLFNGRKIYVTGRKKVKSKTVADVVEALIGAFLST-GGENVGLIFLD----------- 1124 (1396)
Q Consensus 1057 ~f~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~AD~vEAliGA~~~~-~G~~~a~~~~~----------- 1124 (1396)
..++. . ..+|++||+|||+|||+|+| +|++.+.+|+.
T Consensus 393 -------~~~~e--------------------~----~~~~ilaD~~EAliGAiylD~~G~~~a~~~v~~~~~~~~~~~~ 441 (756)
T 2qvw_A 393 -------FSNNL--------------------V----AKSKTWADMYEEIVGSIFTGPNGIYGCEEFLAKTLMSPEHSKT 441 (756)
T ss_dssp -------CCSCC--------------------------CCCCHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHBCGGGSCC
T ss_pred -------CCCCC--------------------C----CCCCHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf -------48997--------------------7----7622778699998486013555769999999999876643013
Q ss_pred ----------------------------------------------------------------HCCCCCCCC-----CC
Q ss_conf ----------------------------------------------------------------219433477-----75
Q 000607 1125 ----------------------------------------------------------------RIGIKVDFV-----NV 1135 (1396)
Q Consensus 1125 ----------------------------------------------------------------~lg~~~~~~-----~~ 1135 (1396)
|+|+.+.+. ..
T Consensus 442 ~~~~~~Dp~Kt~LqE~~q~~~ia~~v~~~~~~ak~~~~~~~~~~~aa~~aL~~l~~~~~~~f~~w~g~~~~~~~~~~~~~ 521 (756)
T 2qvw_A 442 VGSACPDAVTKASKRVCMGEAGAHEFRSLVDYACEQGISVFCSSRVSTMFLERLRDIPAEDMLDWYRLGIQFSHRSGLSG 521 (756)
T ss_dssp ---CCCHHHHHHHHHHHTSCCCHHHHHHHHHHTTTTTCCCBSSSHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTSSC
T ss_pred CCCCCCCCHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHHHCCCCCCCCCCCCCCC
T ss_conf 32123582378999998616502226666667764011000005789999986404655767765077600035455456
Q ss_pred C----------------------------C------------------CCCCCC------------CHHHHHHHHHHHHH
Q ss_conf 2----------------------------2------------------111225------------94447729999988
Q 000607 1136 P----------------------------Y------------------QRQFQV------------HAERLVNVRHLESL 1157 (1396)
Q Consensus 1136 ~----------------------------~------------------~~~~~~------------~~~~~~~~~~le~~ 1157 (1396)
+ + .+.+.. .......+..+|++
T Consensus 522 ~~~~ks~~d~~~al~~g~~l~~~g~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~lE~~ 601 (756)
T 2qvw_A 522 PGGVVSVIDIMTHLARGLWLGSPGFYVEQQTDKNESACPPTIPVLYIYHRSVQCPVLYGSLTETPTGPVASKVLALYEKI 601 (756)
T ss_dssp SSCCSCHHHHHHHHHHHHHHHCCEEECCC---------CCEEECCTTTTSSSCCTTTTCCCC---CTTTHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHCCCEECCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 64211056589886237620466532122222213346667860333023334753234334565210346679999999
Q ss_pred CCCCCCC--------------------------HHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 1951179--------------------------78999973268888898988641134555777679999999984999
Q 000607 1158 LNYSFRD--------------------------PSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPG 1211 (1396)
Q Consensus 1158 lgy~f~~--------------------------~~Ll~~AltH~S~~~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~ 1211 (1396)
|||+|+| +.||.+||||+| ||||||||||||+++|++|+|.+||+
T Consensus 602 lgY~F~~~~~~~~~~~L~~~~l~~i~~~~~~~~~~LL~~AlTH~S---------neRLEfLGDaVL~l~vs~~L~~~~p~ 672 (756)
T 2qvw_A 602 LAYESSGGSKHIAAQTVSRSLAVPIPSGTIPFLIRLLQIALTPHV---------YQKLELLGDAFLKCSLALHLHALHPT 672 (756)
T ss_dssp HSSCCCCSSHHHHHHHHHHTTCSCCCSSCHHHHHHHHHHHHSTGG---------GHHHHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HCCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHCCCC---------CHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 588865763136676654310234333434243899999805754---------05798778999999999999972899
Q ss_pred CCCHHHHHHHHHHCCCHHHHHHHHHCC--CCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 992179999999209168999999839--815773089357787877686543201698877654468971467899997
Q 000607 1212 LSPGYLTDMRSASVNNDCYALSSVKHG--LHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESL 1289 (1396)
Q Consensus 1212 ~~~~~L~~lrs~lv~n~~la~~a~~~g--l~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~EA~ 1289 (1396)
+++|.||.+|+++|||++||.+|.++| |+++++.++.+. ...+|++||+|||+
T Consensus 673 ~~eG~Lt~lrs~lV~~~~La~~a~~lg~~L~~~l~~~~~e~-------------------------~~~~kilaD~~EAl 727 (756)
T 2qvw_A 673 LTEGALTRMRQSAETNSVLGRLTKRFPSVVSEVIIESHPKI-------------------------QPDSKVYGDTFEAI 727 (756)
T ss_dssp CCHHHHHHHHHHTTSHHHHHHHHHTSCTHHHHHHHHHSTTC-------------------------CTTCSHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHHHCCCHHH-------------------------CCCCCHHHHHHHHH
T ss_conf 98679999999995870899999986510999974086121-------------------------47852999999999
Q ss_pred HHHEEEECCCCHHHHHHHHHHCCCCCCCCC
Q ss_conf 650255069886999997631014565766
Q 000607 1290 AGAIFVDSGCNREVVFQSIRPLLEPMITPE 1319 (1396)
Q Consensus 1290 iGAi~~D~g~~~~~~~~~~~~~l~~~~~~~ 1319 (1396)
|||||+|+|+ +.+++|+.+++.|.++.+
T Consensus 728 iGAiylD~G~--~~a~~~v~~~~~~~l~~~ 755 (756)
T 2qvw_A 728 LAAILLACGE--EAAGAFVREHVLPQVVAD 755 (756)
T ss_dssp HHHHHHHHCH--HHHHHHHHHHTGGGCCCC
T ss_pred HHHHHHHCCH--HHHHHHHHHHHHHHHHCC
T ss_conf 9999996799--999999999999886212
No 2
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=1.00 E-value=1 Score=424.95 Aligned_cols=559 Identities=20% Similarity=0.287 Sum_probs=344.0
Q ss_pred CCCCCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHH
Q ss_conf 455798621219999999998608-9899947981289999999999999946999948999928853189999999871
Q 000607 13 EVSADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMH 91 (1396)
Q Consensus 13 ~~~~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~ 91 (1396)
.+.......||+||.++++.++++ |+|+++|||+|||+++++++...........+.+++|++||++|+.||.++++++
T Consensus 5 ~l~~~g~~~lr~~Q~~~i~~~l~g~~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~ 84 (696)
T 2ykg_A 5 DTNLYSPFKPRNYQLELALPAMKGKNTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKY 84 (696)
T ss_dssp --CTTC--CCCHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHH
T ss_conf 63324778866999999999971898899949996099999999999998475677874999978888999999999998
Q ss_pred C---CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHH
Q ss_conf 6---97088995898865678010587401591999569999995730175-4365359999343101378809999999
Q 000607 92 T---DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTE 167 (1396)
Q Consensus 92 ~---~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~-~~~~i~liI~DEaH~~~~~~~y~~im~~ 167 (1396)
. +++++.++|+.... ..+.....+.+|+|+||++|.+.+.++.+ .+.++++||+||||++.++++|..+|..
T Consensus 85 ~~~~~~~v~~~~g~~~~~----~~~~~~~~~~~Iiv~Tp~~L~~~l~~~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~~ 160 (696)
T 2ykg_A 85 FERHGYRVTGISGATAEN----VPVEQIVENNDIIILTPQILVNNLKKGTIPSLSIFTLMIFDECHNTSKQHPYNMIMFN 160 (696)
T ss_dssp TTTTTCCEEEECSSSCSS----SCHHHHHHTCSEEEECHHHHHHHHHTTSSCCGGGCSEEEEETGGGCSTTCHHHHHHHH
T ss_pred HCCCCCEEEEEECCCCCC----CCHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHH
T ss_conf 253882499995886654----3589852599999978899999986076664031318999288754676538999999
Q ss_pred HHHHHCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC--CCHHHHCCCCCCCCCEEEECCCCCC
Q ss_conf 99732038999999199981347779899964669999999998827728960--4732320236687401472568998
Q 000607 168 FYHRLLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC--ASESVLSNFIPFSTAKFKFYKYDEI 245 (1396)
Q Consensus 168 f~~~~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~~--~~~~~l~~~~~~~~~~~~~y~~~~~ 245 (1396)
++...+.......|+++||||||..++..+.. +....+..+...++...... ....++..+...|......+.....
T Consensus 161 ~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~-~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~~~~~p~~~~~~~~~~~~ 239 (696)
T 2ykg_A 161 YLDQKLGGSSGPLPQVIGLTASVGVGDAKTTD-EALDYICKLCASLDASVIATVKHNLEELEQVVYKPQKFFRKVESRIS 239 (696)
T ss_dssp HHHHHHTTCCSCCCEEEEEESCCCCSSCCSHH-HHHHHHHHHHHHTTCCEEECCCTTHHHHHHHSCCCEEEEEECCCCSC
T ss_pred HHHHHHCCCCCCCCEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEECCCCHHHHHHHCCCCCEEEEECCCCCC
T ss_conf 99976313577778699972765667653489-99999999997469846751113437787554898115885576667
Q ss_pred C--HHHHHHHHHHHHHHHHHHHHHHHHH------CHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHH
Q ss_conf 6--2469999999999999998654210------111589999999---------------9999999999999967889
Q 000607 246 P--HALYTHLADELAMIELKHTRSLENL------DLNEAQAELIRK---------------KVSKINSTLLYCLSELGVW 302 (1396)
Q Consensus 246 ~--~~~~~~l~~~l~~l~~~~~~~l~~~------~~~~~~~~~~~~---------------~l~~~~~~~~~~~~~lg~~ 302 (1396)
. ......+...+..+...+...+... .+.......-.. .-.............+...
T Consensus 240 ~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 319 (696)
T 2ykg_A 240 DKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLRKY 319 (696)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
T ss_conf 73899999999999999999999998763035555341449999999988888863124045667889988999999997
Q ss_pred H-------------HHHHHHH-HHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9-------------9999998-6012351012310255258999999899999998733599854448887666788986
Q 000607 303 L-------------ALKAAET-ISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLL 368 (1396)
Q Consensus 303 ~-------------a~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 368 (1396)
. +...... +...... ..+.........+..... .+.... ......
T Consensus 320 ~~~~~i~~~~~~~~~~~~l~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~-~l~~~~---------------~~~~~~ 378 (696)
T 2ykg_A 320 NDALIISEHARMKDALDYLKDFFSNVRAA-----GFDEIEQDLTQRFEEKLQ-ELESVS---------------RDPSNE 378 (696)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHTT-----CCCHHHHHHHHHHHTTHH-HHHHHH---------------HCGGGC
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHH-HHHHHH---------------CCCCCC
T ss_conf 67775013065999999999999988641-----553688999998888788-998874---------------078878
Q ss_pred CHHHHHHHHHHHHH-CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHH
Q ss_conf 28999999999530-289990399996307889999999973358789961358815899--767789889999999983
Q 000607 369 TEKIVCLIESLLEY-RGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFR 445 (1396)
Q Consensus 369 s~K~~~L~~~L~~~-~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~--~~~~m~~~~r~~~l~~Fr 445 (1396)
++|+..|.+++... ...++.++||||+++.++..++..|+... .+.++++..++|.+. ...+|++.+|.+++++|+
T Consensus 379 ~~k~~~L~~ll~~~~~~~~~~~~IIF~~~~~~~~~l~~~L~~~~-~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~ 457 (696)
T 2ykg_A 379 NPKLEDLCFILQEEYHLNPETITILFVKTRALVDALKNWIEGNP-KLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFK 457 (696)
T ss_dssp CHHHHHHHHHHHHHHTTCTTCCEEEECSCHHHHHHHHHHHHHCT-TCCSCCEEC--------------------------
T ss_pred CHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHCC-CCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHH
T ss_conf 97999999999998524899849999480799999999997388-75530126997158775546789999999999987
Q ss_pred C-CCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHH----HHH--
Q ss_conf 5-98129998034545557875358999379985778998640136789-809999965994339999999----998--
Q 000607 446 R-GLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENY----LAS-- 517 (1396)
Q Consensus 446 ~-g~~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~----~~~-- 517 (1396)
+ |+++|||||+++++|||+|+|++||+||+|+|+.+|+||+|| +|.+ +.++++++.++......+... ...
T Consensus 458 ~~g~~~vLVaT~v~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GR-GR~~~g~~~~l~~~~~~~~~~~~~~~~e~~~~~~~ 536 (696)
T 2ykg_A 458 ASGDHNILIATSVADEGIDIAQCNLVILYEYVGNVIKMIQTRGR-GRARGSKCFLLTSNAGVIEKEQINMYKEKMMNDSI 536 (696)
T ss_dssp ---CCSCSEEEESSCCC---CCCSEEEEESCC--CCCC----------CCCEEEEEESCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCCEEEEECHHHCCCCCCCCCEEEEECCCCCHHHHHHHHCC-CCCCCCEEEEEECCCCHHHHHHHHHHHHHHHHHHH
T ss_conf 36971379982216408767447889993798988999885264-76778629999668888889887777999999999
Q ss_pred -------H----HHHHH-----HHHHC-CCCCCCCCCCCCC------C-------CCCEEECCCCCEECCCCHHHHHHHH
Q ss_conf -------8----98999-----99850-6999999888777------8-------7620116998078122359999996
Q 000607 518 -------G----NKMRK-----EVLSH-ASLPCSPLNNHMY------G-------EDFYHVESTGTIATLSSSVSLIYFY 567 (1396)
Q Consensus 518 -------E----~~m~~-----~~~~~-~~~~~~~~~~~~~------~-------~~~~~v~~tgA~l~~~~ai~ll~~y 567 (1396)
. ..+.+ ..++. .... .+...... . ....+....+..+..+.+ +.++|
T Consensus 537 ~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~c~~c~~~~~~~~~~~~~~~~~~v~~~~~--~~~~~ 613 (696)
T 2ykg_A 537 LRLQTWDEAVFREKILHIQTHEKFIRDSQEKP-KPVPDKENKKLLCRKCKALACYTADVRVIEDCHYTVLGDA--FKECF 613 (696)
T ss_dssp HHHTTSCHHHHHHHHHHHHHHHHHHHHHTCCC-CCCCCCSCEEEEESSSCCEEEEGGGEEEETTTEEEECSTT--GGGTE
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHHHHHHHCC-CCCCCCCCHHHHCCCCCCEEEECCHHHHHCCCCEEECCHH--HHHHE
T ss_conf 98642499999999999999999999976443-7764434410303377724356500211047974433877--67472
Q ss_pred HCCCCC-----CCCCCCCCEEEEE-----C--C--E-EEEEEECC---CCCCCCC
Q ss_conf 425999-----9999985389991-----9--8--2-99999928---9999865
Q 000607 568 CSRLPS-----DGYFKPTPKFHIN-----K--E--M-GICTLYLP---NNCPIQT 604 (1396)
Q Consensus 568 C~~Lp~-----d~~~~~~P~~~~~-----~--~--~-~~~~v~LP---~~~p~~~ 604 (1396)
|+.+|+ |.|+...+. .+. . | + |. ++.|| +++++..
T Consensus 614 ~~~~~~~~~~~~~~~~~~~~-~c~~~~c~~~~g~~~~~~-~~~lp~~~~~~~~~~ 666 (696)
T 2ykg_A 614 VSRPHPKPKQFSSFEKRAKI-FCARQNCSHDWGIHVKYK-TFEIPVIKIESFVVE 666 (696)
T ss_dssp EEEEEEEEEECSSCEEEEEE-EESSTTTCCEEEEEEEET-TEEEEEECGGGEEEE
T ss_pred EECCCCCCCCCCCCCCCCCE-EECCCCCCCCCCCEEEEC-CEECCEEEEEEEEEE
T ss_conf 30158765433454258734-758887786545367874-220531455457988
No 3
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=1.00 E-value=1 Score=405.42 Aligned_cols=469 Identities=24% Similarity=0.347 Sum_probs=315.6
Q ss_pred CCCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHC-CCCCCEEEEEECCCCCHHHH-HHHHHHHC
Q ss_conf 798621219999999998608-9899947981289999999999999946-99994899992885318999-99998716
Q 000607 16 ADTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLR-KPSPFVAVFLVPKVVLVPQQ-AEAIKMHT 92 (1396)
Q Consensus 16 ~~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~-~~~~k~~liLvPt~~Lv~Q~-~~~i~~~~ 92 (1396)
+...+.||+||.++++.++++ |+|+++|||+|||+++++++..+..... .+.+++++|++|+++|+.|| .+.+++++
T Consensus 2 ~~~~~~l~~~Q~~~i~~il~g~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~~ 81 (699)
T 4gl2_A 2 PGAMLQLRPYQMEVAQPALEGKNIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPFL 81 (699)
T ss_dssp -----CCCHHHHHHHHHHHSSCCEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHHH
T ss_pred CCCCCCCCHHHHHHHHHHHHCCCEEEECCCCCCHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCHHHHHHHHHHHHHHHC
T ss_conf 97777724889999999983799999869998689999999999998464557888099997999999999999999971
Q ss_pred C--CEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHH------HHCCCCCCCEEEEEEECCCCCCCCCCHHHH
Q ss_conf 9--70889958988656780105874015919995699999957------301754365359999343101378809999
Q 000607 93 D--LKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGL------RLSYFKLNMIKVLILDECHHARGKHQYACI 164 (1396)
Q Consensus 93 ~--l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l------~~~~~~~~~i~liI~DEaH~~~~~~~y~~i 164 (1396)
+ +++..++|+.... ..|.......+|+|+||+.|.+.+ ..+.+.+..+++||+||||++...+.|..+
T Consensus 82 ~~~~~v~~~~g~~~~~----~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 82 KKWYRVIGLSGDTQLK----ISFPEVVKSCDIIISTAQILENSLLNLENGEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp TTTSCEEEEC----CC----CCHHHHHHSCSEEEEEHHHHHHHTC--------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred CCCCEEEEEECCCCHH----HHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCEECCCCCEEEEECCCCCCCCCHHHHH
T ss_conf 7671499985783221----577765237999998989999997434334335121254768999773114766539999
Q ss_pred HHHHHHHHCCC--------CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC-EEEECC-CHHHHCCCCCCCC
Q ss_conf 99999732038--------9999991999813477798999646699999999988277-289604-7323202366874
Q 000607 165 MTEFYHRLLET--------GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCA-SESVLSNFIPFST 234 (1396)
Q Consensus 165 m~~f~~~~~~~--------~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s-~~~~~~-~~~~l~~~~~~~~ 234 (1396)
+..+....... .....|++++|||||..++..... +....+..+...++. .+.+.. +...+..++..|.
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~-~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~~~~~p~ 236 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQA-KAEEHILKLCANLDAFTIKTVKENLDQLKNQIQEPC 236 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHH-HHHHHHHHHHHHHTCSCCCCCCTTHHHHHHHSCCCE
T ss_pred HHHHHHHHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEEEECCCHHHHHHHCCCCC
T ss_conf 9999985431455443445678888799743665545544679-999999999851698778852485677764368986
Q ss_pred CEEEECCCCCCCHHHHHHHHHHHHHHHHHH----------------HHHHHHHC--HHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 014725689986246999999999999999----------------86542101--115899999999999999999999
Q 000607 235 AKFKFYKYDEIPHALYTHLADELAMIELKH----------------TRSLENLD--LNEAQAELIRKKVSKINSTLLYCL 296 (1396)
Q Consensus 235 ~~~~~y~~~~~~~~~~~~l~~~l~~l~~~~----------------~~~l~~~~--~~~~~~~~~~~~l~~~~~~~~~~~ 296 (1396)
.....+.... .......+...+..+.... ...+.... ............++. ++......
T Consensus 237 ~~~~~~~~~~-~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~-~~~~~~~~ 314 (699)
T 4gl2_A 237 KKFAIADATR-EDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRK-YNEALQIN 314 (699)
T ss_dssp EEEEEEC------CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHH-HHHHHHHH
T ss_pred EEEEECCCCC-CCHHHHHHHHHHHHHHHHHCCCCCHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHH
T ss_conf 5999746666-771799999999999988555852211606788999999888877532155899999887-87889888
Q ss_pred HHHHHHHHHHHHHHHHCCCCCH---------HHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 9678899999999860123510---------1231025525899999989999999873359985444888766678898
Q 000607 297 SELGVWLALKAAETISCYESDF---------FAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGL 367 (1396)
Q Consensus 297 ~~lg~~~a~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 367 (1396)
...+.+.+......+....... .....+ ............+....+...... ...
T Consensus 315 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~l~~~~~~---------------~~~ 378 (699)
T 4gl2_A 315 DTIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKL-DETDRFLMTLFFENNKMLKRLAEN---------------PEY 378 (699)
T ss_dssp HHSCHHHHHHHHHHHHHHHHHHHC------------C-CHHHHHHHHHHHHHHHHHHHHHTC---------------CC-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCC-CHHHHHHHHHHHHHHHHHHHHHHC---------------CCC
T ss_conf 7888898999999999998753102223332101123-626899999898878999998646---------------777
Q ss_pred CCHHHHHHHHHHHH-HCCCC-CEEEEEEECHHHHHHHHHHHHHHHCCCC--CCCEEEEEECCCCC--CCCCCHHHHHHHH
Q ss_conf 62899999999953-02899-9039999630788999999997335878--99613588158997--6778988999999
Q 000607 368 LTEKIVCLIESLLE-YRGVE-DIRCIIFVERVITAIVLQSLLSELLPRH--CTWKTKYIAGNNSG--IQCQSRKKQNEIV 441 (1396)
Q Consensus 368 ~s~K~~~L~~~L~~-~~~~~-~~~~IIFv~~r~ta~~L~~~L~~~~p~~--~~~~~~~i~G~~~~--~~~m~~~~r~~~l 441 (1396)
.++|+..|.++|.. +.... +.++||||+++.++..++..|+.. +.+ .++++..+||.+.+ ..+|+..+|.+++
T Consensus 379 ~~~k~~~L~~~L~~~~~~~~~~~~~IVF~~s~~~~~~l~~~L~~~-~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~ 457 (699)
T 4gl2_A 379 ENEKLTKLRNTIMEQYTRTEESARGIIFTKTRQSAYALSQWITEN-EKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVI 457 (699)
T ss_dssp ---CSSCSHHHHHHHHHHSSSCCCEEEECSCHHHHHHHHHHHHSS-CSCC-----CEECCCSCCCTTCCCCCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHCCCCCCCEEEEECCHHHHHHHHHHHHHC-CCCCCCCCCEEEEECCCCCCCCCCCCHHHHHHHH
T ss_conf 887999999999999714799981999979299999999999747-3322368644999778876677788999999999
Q ss_pred HHHHCCCEEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
Q ss_conf 9983598129998034545557875358999379985778998640136789809999965994339
Q 000607 442 EEFRRGLVNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 442 ~~Fr~g~~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~ 508 (1396)
++|++|+++|||||+++++|||+|+|++||+||+|+|+.+|+||.|||||.|+.++++...++....
T Consensus 458 ~~F~~g~~~VLVaT~~~~~GIDip~v~~VI~~d~p~s~~~~~Qr~GRArr~g~~~~l~~~~~~~~~~ 524 (699)
T 4gl2_A 458 SKFRTGKINLLIATTVAEEGLDIKECNIVIRYGLVTNEIAMVQARGRARADESTYVLVAHSGSGVIE 524 (699)
T ss_dssp HHHCC---CCSEEECSCCTTSCCCSCCCCEEESCCCCHHHHHHHHTTSCSSSCEEEEEEESSSCSHH
T ss_pred HHHHCCCCCEEEECCCCCCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHH
T ss_conf 9986699758997464126875634888999479999899988708788999669999817856889
No 4
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=1.00 E-value=1 Score=401.79 Aligned_cols=464 Identities=22% Similarity=0.288 Sum_probs=314.6
Q ss_pred CCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CCE
Q ss_conf 21219999999998608-98999479812899999999999999469999489999288531899999998716---970
Q 000607 20 PFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DLK 95 (1396)
Q Consensus 20 ~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~---~l~ 95 (1396)
+.||+||.++++.++++ |+|+++|||+|||+++++++...........+++++|++|+++|+.||.+.+++++ +++
T Consensus 3 ~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 82 (555)
T 3tbk_A 3 LKPRNYQLELALPAKKGKNTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFERLGYN 82 (555)
T ss_dssp CCCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTCC
T ss_pred CCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCCE
T ss_conf 88769999999999679988999599983999999999999984666789879999688899999999999870538947
Q ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCC
Q ss_conf 88995898865678010587401591999569999995730175-43653599993431013788099999999973203
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLLE 174 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~-~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~ 174 (1396)
+..++|+.... ..|.....+++|+|+||+.|.+.+.++.+ .+.+++++|+||||++.+.++|..++..+......
T Consensus 83 ~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~~~~ 158 (555)
T 3tbk_A 83 IASISGATSDS----VSVQHIIEDNDIIILTPQILVNNLNNGAIPSLSVFTLMIFDECHNTSKNHPYNQIMFRYLDHKLG 158 (555)
T ss_dssp EEEECTTTGGG----SCHHHHHHHCSEEEECHHHHHHHHHTSSSCCGGGCSEEEETTGGGCSTTCHHHHHHHHHHHHHTS
T ss_pred EEEECCCCCCH----HHHHHHHCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHC
T ss_conf 99975997401----22898736999999789999999860763440107789997754568733499999999975411
Q ss_pred CCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCC-EEEECC-CHHHHCCCCCCCCCEEEECCCCCCCHHHHHH
Q ss_conf 89999991999813477798999646699999999988277-289604-7323202366874014725689986246999
Q 000607 175 TGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNS-KVYTCA-SESVLSNFIPFSTAKFKFYKYDEIPHALYTH 252 (1396)
Q Consensus 175 ~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s-~~~~~~-~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~ 252 (1396)
......++++||||||..++..... +....+..+...++. .+.+.. ....+..+...|......+... .+......
T Consensus 159 ~~~~~~~~~l~lSAT~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~ 236 (555)
T 3tbk_A 159 ESRDPLPQVVGLTASVGVGDAKTAE-EAMQHICKLCAALDASVIATVRDNVAELEQVVYKPQKISRKVASR-TSNTFKCI 236 (555)
T ss_dssp SCCSCCCEEEEEESCCCCTTCCSHH-HHHHHHHHHHHHTTCSEEECCCSCHHHHHTTCCCCCEEEEECCCC-SCCHHHHH
T ss_pred CCCCCCCEEEEEECCCCCCCCCCHH-HHHHHHHHHHHHCCCEEEECCCCCHHHHHHHCCCCCEEEEEECCC-CCCHHHHH
T ss_conf 2468887399992676667652299-999999999985698066332357888986469982699982676-66719999
Q ss_pred HHHHHHHHHHHHH---HHHHH------HCHH-----------------------------HHHHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999998---65421------0111-----------------------------58999999999999999999
Q 000607 253 LADELAMIELKHT---RSLEN------LDLN-----------------------------EAQAELIRKKVSKINSTLLY 294 (1396)
Q Consensus 253 l~~~l~~l~~~~~---~~l~~------~~~~-----------------------------~~~~~~~~~~l~~~~~~~~~ 294 (1396)
+...+..+..-.. ..+.. .++. ...+......+..+ .....
T Consensus 237 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~ 315 (555)
T 3tbk_A 237 ISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLRKY-NDALI 315 (555)
T ss_dssp HHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999999999987654443122333441024689999998766650466046778999999999999999-99875
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99967889999999986012351012310255258999999899999998733599854448887666788986289999
Q 000607 295 CLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVC 374 (1396)
Q Consensus 295 ~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 374 (1396)
.....+.+.+......+...... .............+............ .....++|+..
T Consensus 316 ~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~k~~~ 375 (555)
T 3tbk_A 316 ISEDAQMTDALNYLKAFFHDVRE----AAFDETERELTRRFEEKLEELEKVSR----------------DPSNENPKLRD 375 (555)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHCC---------HHHHHHHHHHTTHHHHHHHHH----------------CGGGCCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHHHHHHCC----------------CCCCCCHHHHH
T ss_conf 22002279999999999998763----36666789999998645566654204----------------77768989999
Q ss_pred HHHHHHHH-CCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-CCEE
Q ss_conf 99999530-289990399996307889999999973358789961358815899--7677898899999999835-9812
Q 000607 375 LIESLLEY-RGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRR-GLVN 450 (1396)
Q Consensus 375 L~~~L~~~-~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~--~~~~m~~~~r~~~l~~Fr~-g~~n 450 (1396)
|.++|... ....+.++||||+++.++..++..|...... .++++..++|.+. ...+|++.+|.+++++|++ |+++
T Consensus 376 l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~ 454 (555)
T 3tbk_A 376 LYLVLQEEYHLKPETKTILFVKTRALVDALKKWIEENPAL-SFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNN 454 (555)
T ss_dssp HHHHHHHHHHHCTTCCEEEECSSHHHHHHHHHHHHHCGGG-TTCCEEECCC--------------------------CCS
T ss_pred HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHCCCC-CCEEEEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 9999999715689966999967689999999999628676-730024897058753345668899999999974279713
Q ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHHHHH
Q ss_conf 9998034545557875358999379985778998640136789809999965994339999
Q 000607 451 VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQSRL 511 (1396)
Q Consensus 451 iLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~~~i 511 (1396)
|||||+++++|||+|+|++||+||+|||+.+|+||.||+|+.++.++.|+..++......+
T Consensus 455 vLvaT~~~~~GlDlp~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~~~~~~~~ 515 (555)
T 3tbk_A 455 ILIATSVADEGIDIAECNLVILYEYVGNVIKMIQTRGRGRARDSKCFLLTSSADVIEKEKA 515 (555)
T ss_dssp EEEECCCTTCCEETTSCSEEEEESCCSSCCCEECSSCCCTTTSCEEEEEESCHHHHHHHHH
T ss_pred EEEECCHHHCCCCCCCCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEECCCCHHHHHHH
T ss_conf 9998160532786603798999179997788777527676789559999758777789987
No 5
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=1.00 E-value=1 Score=401.52 Aligned_cols=463 Identities=22% Similarity=0.319 Sum_probs=311.2
Q ss_pred CCCCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---
Q ss_conf 98621219999999998608-98999479812899999999999999469999489999288531899999998716---
Q 000607 17 DTLPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT--- 92 (1396)
Q Consensus 17 ~~~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~--- 92 (1396)
.....||+||.++++.++++ |+|+++|||+|||+++++++...........+++++|++|+++|+.||.+.+++++
T Consensus 3 ~~~~~~~~~Q~~~i~~~~~~~~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~ 82 (556)
T 4a2p_A 3 METKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQ 82 (556)
T ss_dssp -----CCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGG
T ss_pred CCCCCCCHHHHHHHHHHHCCCCEEEECCCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCC
T ss_conf 78778779999999999749989998199971899999999999983745679869999288999999999999872406
Q ss_pred CCEEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHH
Q ss_conf 97088995898865678010587401591999569999995730175-43653599993431013788099999999973
Q 000607 93 DLKVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHR 171 (1396)
Q Consensus 93 ~l~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~-~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~ 171 (1396)
++++..++|+.... ..|.....+++|+|+||+.|.+.+.++.+ .+.+++++|+||||++.+.++|..++..+...
T Consensus 83 ~~~~~~~~g~~~~~----~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~~~ 158 (556)
T 4a2p_A 83 GYSVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQ 158 (556)
T ss_dssp TCCEEECCCC---------CHHHHHHHCSEEEECHHHHHHHHHSSSCCCSTTCSEEEEETGGGCSTTSHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCCC----HHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCHHHHHHHHHHHH
T ss_conf 94599982898742----22898617999999889999999983750250307799998875358864599999999985
Q ss_pred HCCCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCE-EEECC-CHHHHCCCCCCCCCEEEECCCCCCCHHH
Q ss_conf 203899999919998134777989996466999999999882772-89604-7323202366874014725689986246
Q 000607 172 LLETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSK-VYTCA-SESVLSNFIPFSTAKFKFYKYDEIPHAL 249 (1396)
Q Consensus 172 ~~~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~-~~~~~-~~~~l~~~~~~~~~~~~~y~~~~~~~~~ 249 (1396)
.... ....++++||||||..++..... +..+.+..++..++.. +.+.. ....+..+...|......+... .+...
T Consensus 159 ~~~~-~~~~~~~l~lSAT~~~~~~~~~~-~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 235 (556)
T 4a2p_A 159 KFNS-ASQLPQILGLTASVGVGNAKNIE-ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPF 235 (556)
T ss_dssp HHCC----CCEEEEEESCCCCTTCSSHH-HHHHHHHHHHHHHTCSEEECCCTTHHHHHHHTCCCCEEEEECCCC-SCCHH
T ss_pred HHCC-CCCCCEEEEEECCCCCCCHHHHH-HHHHHHHHHHHHCCCEEECCHHCCHHHHHHCCCCCCEEEEECCCC-CCCHH
T ss_conf 3013-68887699994785667516699-999999999985398484333202677874279985379982787-67759
Q ss_pred HHHHHHHHHH---HHHHH----------------------HHHHHHH----CHH--------HHHHHHHHHHHHHHHHHH
Q ss_conf 9999999999---99999----------------------8654210----111--------589999999999999999
Q 000607 250 YTHLADELAM---IELKH----------------------TRSLENL----DLN--------EAQAELIRKKVSKINSTL 292 (1396)
Q Consensus 250 ~~~l~~~l~~---l~~~~----------------------~~~l~~~----~~~--------~~~~~~~~~~l~~~~~~~ 292 (1396)
...+...+.. ..+.. ...+... ... ...+......+..+ ...
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~ 314 (556)
T 4a2p_A 236 AAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDA 314 (556)
T ss_dssp HHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHHH-HHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 9999999999999998886320121033334433567899999999877640543201678999999999999999-999
Q ss_pred HHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHH
Q ss_conf 99999678899999999860123510123102552589999998999999987335998544488876667889862899
Q 000607 293 LYCLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKI 372 (1396)
Q Consensus 293 ~~~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K~ 372 (1396)
.......+.+.+......+..... ....+.........+............ .....++|+
T Consensus 315 ~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~K~ 374 (556)
T 4a2p_A 315 LIISEDARIIDALSYLTEFFTNVK----NGPYTELEQHLTAKFQEKEPELIALSK----------------DETNENPKL 374 (556)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHH----HSCCCHHHHHHHHHHHTTHHHHHHHHH----------------CSSSCCHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HCCCCHHHHHHHHHHHHHHHHHHHHCC----------------CCCCCCHHH
T ss_conf 988611207899999999999987----337987899999987667887642103----------------789999699
Q ss_pred HHHHHHHHH-HCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-CC
Q ss_conf 999999953-0289990399996307889999999973358789961358815899--7677898899999999835-98
Q 000607 373 VCLIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRR-GL 448 (1396)
Q Consensus 373 ~~L~~~L~~-~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~--~~~~m~~~~r~~~l~~Fr~-g~ 448 (1396)
..|.++|.. +...++.++||||+++.++..++..|... +.+.++++..++|.+. ...+|++.+|.+++++|++ |+
T Consensus 375 ~~L~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~ 453 (556)
T 4a2p_A 375 EELVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKD 453 (556)
T ss_dssp HHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHTTC-SGGGSCCEEC------------------------------
T ss_pred HHHHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCEEEEEEEECCCCCCCCCCCCHHHHHHHHHHHCCCCC
T ss_conf 999999999834799854999976589999999999858-7755000147873677655656698999999998404696
Q ss_pred EEEEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
Q ss_conf 129998034545557875358999379985778998640136789809999965994339
Q 000607 449 VNVIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 449 ~niLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~ 508 (1396)
++|||||+++++|||+|+|++||+||+|+|+..|+||.||+|...+.++.|+..++....
T Consensus 454 ~~vLvaT~~~~~GiDip~v~~VI~~d~p~s~~~~~Qr~GRgR~~~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 454 NRLLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVEN 513 (556)
T ss_dssp CCEEEEEC-----------CEEEEETCCSCHHHHHHC--------CCEEEEESCHHHHHH
T ss_pred EEEEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHH
T ss_conf 589997670433777521788999189997889988638787888418999827636777
No 6
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=401.33 Aligned_cols=460 Identities=22% Similarity=0.335 Sum_probs=310.6
Q ss_pred CCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CC
Q ss_conf 621219999999998608-98999479812899999999999999469999489999288531899999998716---97
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~---~l 94 (1396)
...||+||.++++.++++ |+|+++|||+|||+++++++...........+++++||+|+++|+.||.+.+++++ ++
T Consensus 246 ~~~~r~~Q~~ai~~il~g~~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (936)
T 4a2w_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (936)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHTTTC
T ss_pred CCCCCHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHHCCCCC
T ss_conf 89877999999999980998999969984599999999999997365568985999969899999999999997121695
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 088995898865678010587401591999569999995730175-4365359999343101378809999999997320
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~-~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~ 173 (1396)
++..++|+.... ..+.....+.+|+|+||++|.+.+.++.+ .+.++++||+||||++.+.++|..++..+.....
T Consensus 326 ~v~~~~G~~~~~----~~~~~~~~~~~IvI~Tp~~L~~~l~~~~~~~l~~~~liViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (936)
T 4a2w_A 326 SVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (936)
T ss_dssp CEEEECCC---------CCHHHHHHCSEEEECHHHHHHHHHSSSCCCGGGCSEEEEETGGGCSTTCHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHH----HHHHHHCCCCCEEEECHHHHHHHHHCCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 599997996312----5789741699999944999999987176453367879999873135998669999999999863
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEE-CC-CHHHHCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 3899999919998134777989996466999999999882772896-04-732320236687401472568998624699
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CA-SESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~-~~-~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.. ....+++++|||||..++..... +....+..+...|+..... .. +...+..+...|......+... .+.....
T Consensus 402 ~~-~~~~~~~l~LSATp~~~~~~~l~-~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~~~~~p~~~~~~~~~~-~~~~~~~ 478 (936)
T 4a2w_A 402 NS-ASQLPQILGLTASVGVGNAKNIE-ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFAA 478 (936)
T ss_dssp TT-CSCCCEEEEEESCCCCTTCCSHH-HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHSCCCCEEEEECCCC-SCCHHHH
T ss_pred CC-CCCCCEEEEECCCCCCCCCHHHH-HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCCEEEECCCC-CCCHHHH
T ss_conf 13-78867399863885545402089-999999999985497155346544899987536776237733655-6757999
Q ss_pred HHHHHHHH---HHHH----------------------HHHHHHHH----CHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999---9999----------------------98654210----1115--------8999999999999999999
Q 000607 252 HLADELAM---IELK----------------------HTRSLENL----DLNE--------AQAELIRKKVSKINSTLLY 294 (1396)
Q Consensus 252 ~l~~~l~~---l~~~----------------------~~~~l~~~----~~~~--------~~~~~~~~~l~~~~~~~~~ 294 (1396)
.+...+.. +.+. +...+... .... ..+......+..+ +....
T Consensus 479 ~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~~~-~~al~ 557 (936)
T 4a2w_A 479 IISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALI 557 (936)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999999999887665553202233225779999999999887740553210357999999999999998-88875
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99967889999999986012351012310255258999999899999998733599854448887666788986289999
Q 000607 295 CLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVC 374 (1396)
Q Consensus 295 ~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 374 (1396)
.....+.+.+......+...... ...+.........+...... +.... ......++|+..
T Consensus 558 i~~~~~~~~~~~~l~~~~~~~~~----~~~~~~e~~l~~~~~~~~~~-l~~~~---------------~~~~~~~~K~~~ 617 (936)
T 4a2w_A 558 ISEDARIIDALSYLTEFFTNVKN----GPYTELEQHLTAKFQEKEPE-LIALS---------------KDETNENPKLEE 617 (936)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHHH----TTCCHHHHHHHHHHHHHHHH-HHHHH---------------TSTTCCCHHHHH
T ss_pred HHCCHHHHHHHHHHHHHHHHHHH----CCCCHHHHHHHHHHHHHHHH-HHHHH---------------HCCCCCCHHHHH
T ss_conf 00204288899999999998763----25887899999989999999-99764---------------056778979999
Q ss_pred HHHHHHH-HCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-CCEE
Q ss_conf 9999953-0289990399996307889999999973358789961358815899--7677898899999999835-9812
Q 000607 375 LIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRR-GLVN 450 (1396)
Q Consensus 375 L~~~L~~-~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~--~~~~m~~~~r~~~l~~Fr~-g~~n 450 (1396)
|.++|.. +....+.++||||+++.++..|...|... +.+.++++..++|.+. ...+|++.+|.+++++|++ |+++
T Consensus 618 L~~lL~~~~~~~~~~rvLIF~~t~~~ae~L~~~L~~~-~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~ 696 (936)
T 4a2w_A 618 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (936)
T ss_dssp HHHHHHHTTTSCTTCCEEEEESSHHHHHHHHHHHHHC-STTSSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCCCCEEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEE
T ss_conf 9999999853589974999969799999999998637-353666616996578765678889999999999863159815
Q ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCH
Q ss_conf 999803454555787535899937998577899864013678980999996599433
Q 000607 451 VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTT 507 (1396)
Q Consensus 451 iLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~ 507 (1396)
+||||+++++|||+|+|++||+||+|+|+.+|+||+||+|...+.+++++..++...
T Consensus 697 VLVaT~~~~eGIDlp~v~~VI~yD~p~s~~~~iQr~GRGR~~~g~vi~Li~~~t~ee 753 (936)
T 4a2w_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVE 753 (936)
T ss_dssp EEEEECC------CCCCSEEEEESCCSCSHHHHCC-------CCCEEEEESCHHHHH
T ss_pred EEEEECCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHH
T ss_conf 999807264277605589899938999889999964877888877999986988999
No 7
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=1.00 E-value=1 Score=401.32 Aligned_cols=461 Identities=21% Similarity=0.325 Sum_probs=310.5
Q ss_pred CCCCHHHHHHHHHHHHCC-CEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHC---CC
Q ss_conf 621219999999998608-98999479812899999999999999469999489999288531899999998716---97
Q 000607 19 LPFARNYQLEALENALKQ-NTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHT---DL 94 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~-n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~---~l 94 (1396)
...||+||.++++.++++ |+|+++|||+|||+++++++...........+++++||||+++|+.||.+.+++++ ++
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~~~~ 325 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGKNALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFERQGY 325 (797)
T ss_dssp --CCCHHHHHHHHHHHTTCCEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHHHCCCCCC
T ss_conf 89999999999999980999899969997299999999999998466567996999969899999999999986143794
Q ss_pred EEEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCC-CCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 088995898865678010587401591999569999995730175-4365359999343101378809999999997320
Q 000607 95 KVGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYF-KLNMIKVLILDECHHARGKHQYACIMTEFYHRLL 173 (1396)
Q Consensus 95 ~v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~-~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~ 173 (1396)
++..++|+.... ..|.....+++|+|+||+.|.+.+.++.+ .+.++++||+||||++.+.++|..++..+.....
T Consensus 326 ~v~~~~g~~~~~----~~~~~~~~~~~Ivv~Tp~~l~~~l~~~~~~~~~~~~~iViDEaH~~~~~~~~~~i~~~~~~~~~ 401 (797)
T 4a2q_A 326 SVQGISGENFSN----VSVEKVIEDSDIIVVTPQILVNSFEDGTLTSLSIFTLMIFDECHNTTGNHPYNVLMTRYLEQKF 401 (797)
T ss_dssp CEEEECCC---------CHHHHHHTCSEEEECHHHHHHHHHSSSCCCGGGCSEEEETTGGGCSTTSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCHH----HHHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCCCCEEEEECCCCCCCCCCHHHHHHHHHHHHH
T ss_conf 699996996232----4699740799999976699999998265465133778999886355887649999999999763
Q ss_pred CCCCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEE-CC-CHHHHCCCCCCCCCEEEECCCCCCCHHHHH
Q ss_conf 3899999919998134777989996466999999999882772896-04-732320236687401472568998624699
Q 000607 174 ETGDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYT-CA-SESVLSNFIPFSTAKFKFYKYDEIPHALYT 251 (1396)
Q Consensus 174 ~~~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~-~~-~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~ 251 (1396)
.. ....++++||||||..++..+.. +....+..+...++..... .. ....+..++..|......+... .+.....
T Consensus 402 ~~-~~~~~~~l~lSATp~~~~~~~~~-~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~ 478 (797)
T 4a2q_A 402 NS-ASQLPQILGLTASVGVGNAKNIE-ETIEHICSLCSYLDIQAISTVRENIQELQRFMNKPEIDVRLVKRR-IHNPFAA 478 (797)
T ss_dssp TT-CCCCCEEEEEESCCCCTTCCSHH-HHHHHHHHHHHHHTCSEEECCCTTHHHHHHHSCCCCCEEEECCCC-SCCHHHH
T ss_pred CC-CCCCCEEEEECCCCCCCCCCCHH-HHHHHHHHHHHHCCCCEEECCCCCHHHHHHHCCCCCEEEEECCCC-CCCHHHH
T ss_conf 14-78878599972775545522489-999999999985498488545431788997358885488845777-7867899
Q ss_pred HHHHHHHH---HHHH----------------------HHHHHHHH----CHHH--------HHHHHHHHHHHHHHHHHHH
Q ss_conf 99999999---9999----------------------98654210----1115--------8999999999999999999
Q 000607 252 HLADELAM---IELK----------------------HTRSLENL----DLNE--------AQAELIRKKVSKINSTLLY 294 (1396)
Q Consensus 252 ~l~~~l~~---l~~~----------------------~~~~l~~~----~~~~--------~~~~~~~~~l~~~~~~~~~ 294 (1396)
.+...+.. +... +...+... .... ..+......+..+ +....
T Consensus 479 ~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~-~~~~~ 557 (797)
T 4a2q_A 479 IISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY-NDALI 557 (797)
T ss_dssp HHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHH-HHHHH
T ss_conf 99999999999999987567765300001140567789999999877740343202567999999999999999-98876
Q ss_pred HHHHHHHHHHHHHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 99967889999999986012351012310255258999999899999998733599854448887666788986289999
Q 000607 295 CLSELGVWLALKAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVC 374 (1396)
Q Consensus 295 ~~~~lg~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~ 374 (1396)
.....+.+.+......+..... ....+.........+............ .....++|+..
T Consensus 558 ~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~l~~~~~----------------~~~~~~~K~~~ 617 (797)
T 4a2q_A 558 ISEDARIIDALSYLTEFFTNVK----NGPYTELEQHLTAKFQEKEPELIALSK----------------DETNENPKLEE 617 (797)
T ss_dssp HHHHSCHHHHHHHHHHHHHHHH----HTTCCHHHHHHHHHHHTTHHHHHHHHH----------------CTTCCCHHHHH
T ss_pred HHCCCCHHHHHHHHHHHHHHHH----CCCCCHHHHHHHHHHHHHHHHHHHHHC----------------CCCCCCHHHHH
T ss_conf 5413258889999999999875----047668999999999999999987630----------------78889959999
Q ss_pred HHHHHHH-HCCCCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCC--CCCCCCHHHHHHHHHHHHC-CCEE
Q ss_conf 9999953-0289990399996307889999999973358789961358815899--7677898899999999835-9812
Q 000607 375 LIESLLE-YRGVEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNS--GIQCQSRKKQNEIVEEFRR-GLVN 450 (1396)
Q Consensus 375 L~~~L~~-~~~~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~--~~~~m~~~~r~~~l~~Fr~-g~~n 450 (1396)
|.++|.. +....+.++||||+++.++..+...|+.. +.+.++++..++|.+. ...+|++.+|.+++++|++ |+++
T Consensus 618 L~~lL~~~~~~~~~~kvLIF~~~~~~~~~L~~~L~~~-~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~ 696 (797)
T 4a2q_A 618 LVCILDDAYRYNPQTRTLLFAKTRALVSALKKCMEEN-PILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNR 696 (797)
T ss_dssp HHHHHHHHHHHCSSCCEEEEESSHHHHHHHHHHHHTC-STTCSCCCEEC----------------------------CCS
T ss_pred HHHHHHHHHCCCCCCEEEEEECCHHHHHHHHHHHHHC-CCCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCE
T ss_conf 9999999850589970899979589999999999747-564665521898447754578989999999999851369704
Q ss_pred EEEEECCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHCCCCCCCCEEEEEECCCCCHH
Q ss_conf 9998034545557875358999379985778998640136789809999965994339
Q 000607 451 VIVATSILEEGLDVQSCNLVIMFDPSRTVCSFIQSRGRARMQNSDYLLMVKSGDSTTQ 508 (1396)
Q Consensus 451 iLVaT~v~eeGIDIp~~~~VI~fD~p~s~~~yiQr~GRA~R~gs~~i~lv~~~~~~~~ 508 (1396)
+||||+++++|||+|+|++||+||+|+|+.+|+||+||+|...+.++.|+..++....
T Consensus 697 vLVaT~~~~~GIDlp~v~~VI~yd~p~s~~~~iQr~GRGR~~~g~~i~l~~~~~~ee~ 754 (797)
T 4a2q_A 697 LLIATSVADEGIDIVQCNLVVLYEYSGNVTKMIQVRGRGRAAGSKCILVTSKTEVVEN 754 (797)
T ss_dssp EEEEECC-------CCCSEEEEESCCSCHHHHHTC-------CCCEEEEECCHHHHHH
T ss_pred EEEECCCHHCCCCCHHCCEEEEECCCCCHHHHHHHCCCCCCCCCEEEEEEECCCHHHH
T ss_conf 9997480544797510898999489998899998538887878659999728768899
No 8
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=1.00 E-value=1 Score=364.37 Aligned_cols=449 Identities=23% Similarity=0.263 Sum_probs=284.6
Q ss_pred CCCCHHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHCCC---E
Q ss_conf 6212199999999986089899947981289999999999999946999948999928853189999999871697---0
Q 000607 19 LPFARNYQLEALENALKQNTIVFLETGSGKTLIAIMLLRSYAYLLRKPSPFVAVFLVPKVVLVPQQAEAIKMHTDL---K 95 (1396)
Q Consensus 19 ~~~~R~yQ~e~~e~al~~n~Ii~~~TGsGKT~iailli~~l~~~~~~~~~k~~liLvPt~~Lv~Q~~~~i~~~~~l---~ 95 (1396)
...||+||.++++.++++++|+++|||+|||+++++++..... ..+++++|+||+++|+.||.++++++++. +
T Consensus 7 ~~~l~~~Q~~~i~~~~~~~~ll~~~tG~GKT~~~~~~~~~~~~----~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKETNCLIVLPTGLGKTLIAMMIAEYRLT----KYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGSCEEEECCTTSCHHHHHHHHHHHHHH----HSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCCCHHHHHHHHHHHHCCEEEECCCCCCHHHHHHHHHHHHHH----CCCCEEEEEECCHHHHHHHHHHHHHHHCCCHHH
T ss_conf 8786399999999996199899918998789999999999986----479859999788899999999999874756111
Q ss_pred EEEEECCCCCCCCCCCCHHHHHCCCCEEEECHHHHHHHHHHCCCCCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHCCC
Q ss_conf 88995898865678010587401591999569999995730175436535999934310137880999999999732038
Q 000607 96 VGKYWGDMGVDFWDGATWKEEMSKHEVLVMTPQILLDGLRLSYFKLNMIKVLILDECHHARGKHQYACIMTEFYHRLLET 175 (1396)
Q Consensus 96 v~~~~G~~~~~~~~~~~~~~~~~~~~ViV~T~q~L~~~l~~~~~~~~~i~liI~DEaH~~~~~~~y~~im~~f~~~~~~~ 175 (1396)
+..++|+.... .+.......+|+|+||+.+.+.+.++.+.+.++++||+||||++.+.+.+..++..+...
T Consensus 83 v~~~~g~~~~~-----~~~~~~~~~~ivv~T~~~l~~~~~~~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~---- 153 (494)
T 1wp9_A 83 IVALTGEKSPE-----ERSKAWARAKVIVATPQTIENDLLAGRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQ---- 153 (494)
T ss_dssp EEEECSCSCHH-----HHHHHHHHCSEEEECHHHHHHHHHTTSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHH----
T ss_pred EEEEECCCCHH-----HHHHHCCCCCEEEECHHHHHHHHHCCCCCHHHCEEEEEECCCCCCCCCCHHHHHHHHHHC----
T ss_conf 68760775335-----566533579899963999999986087156541089997875668888199999999732----
Q ss_pred CCCCCCEEEEEECCCCCCCCCCCHHHHHHHHHHHHHHHCCEEEEC--CCHHHHCCCCCCCCCEEEECCCCCCCHHHHHHH
Q ss_conf 999999199981347779899964669999999998827728960--473232023668740147256899862469999
Q 000607 176 GDSNLPRIFGMTASPIKSKVSSSEQDYWQKIHDLETLMNSKVYTC--ASESVLSNFIPFSTAKFKFYKYDEIPHALYTHL 253 (1396)
Q Consensus 176 ~~~~~p~ilgLTATp~~~~~~~~~~~~~~~i~~Le~~L~s~~~~~--~~~~~l~~~~~~~~~~~~~y~~~~~~~~~~~~l 253 (1396)
...+++++|||||.++. ..+..+...++...... .....+..+..........+. .+..... +
T Consensus 154 --~~~~~~l~lTaTp~~~~---------~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~-~ 218 (494)
T 1wp9_A 154 --AKNPLVIGLTASPGSTP---------EKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVD---LPEIYKE-V 218 (494)
T ss_dssp --CSSCCEEEEESCSCSSH---------HHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEEC---CCHHHHH-H
T ss_pred --CCCCEEEEEECCCCCCC---------HHHHHHHHHCCHHEEECCCCCCHHHHHHCCCCCEEEEECC---CCHHHHH-H
T ss_conf --88776999956998885---------7899999850700050267875878875278742689568---8588999-9
Q ss_pred HHHHHHHHHHHHHHHHHHCH--------HHHHHHHHHHHHHHHH--------------------HHHHHHHHHHHHHHHH
Q ss_conf 99999999999865421011--------1589999999999999--------------------9999999967889999
Q 000607 254 ADELAMIELKHTRSLENLDL--------NEAQAELIRKKVSKIN--------------------STLLYCLSELGVWLAL 305 (1396)
Q Consensus 254 ~~~l~~l~~~~~~~l~~~~~--------~~~~~~~~~~~l~~~~--------------------~~~~~~~~~lg~~~a~ 305 (1396)
...+..........+....+ ....+......+.... ..........+.....
T Consensus 219 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (494)
T 1wp9_A 219 RKLLREMLRDALKPLAETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALR 298 (494)
T ss_dssp HHHHHHHHHHHHHHHHHHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_conf 99898999999999997355654577733557899999999875335631134799998888899999999852579999
Q ss_pred HHHHHHHCCCCCHHHHHHCCCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHH-CC
Q ss_conf 99998601235101231025525899999989999999873359985444888766678898628999999999530-28
Q 000607 306 KAAETISCYESDFFAWEQLDGFGETIIKKFGSDASQALVTYVPSGAEWSIGDDSKFNLDSGLLTEKIVCLIESLLEY-RG 384 (1396)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~L~~~L~~~-~~ 384 (1396)
.....+....... .............+......+.... .....++|+..|.++|..+ ..
T Consensus 299 ~~~~~l~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~----------------~~~~~~~k~~~l~~~l~~~~~~ 358 (494)
T 1wp9_A 299 AYIKKLYEEAKAG----STKASKEIFSDKRMKKAISLLVQAK----------------EIGLDHPKMDKLKEIIREQLQR 358 (494)
T ss_dssp HHHHHHHHHHHTT----CCHHHHHHHTSHHHHHHHHHHHHHH----------------HHTCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCC----CCHHHHHHHHHHHHHHHHHHHHHHH----------------HCCCCCHHHHHHHHHHHHHHCC
T ss_conf 9999998752232----1145566665078898999999887----------------4589986999999999998436
Q ss_pred CCCEEEEEEECHHHHHHHHHHHHHHHCCCCCCCEEEEEECCCCC--CCCCCHHHHHHHHHHHHCCCEEEEEEECCCCCCC
Q ss_conf 99903999963078899999999733587899613588158997--6778988999999998359812999803454555
Q 000607 385 VEDIRCIIFVERVITAIVLQSLLSELLPRHCTWKTKYIAGNNSG--IQCQSRKKQNEIVEEFRRGLVNVIVATSILEEGL 462 (1396)
Q Consensus 385 ~~~~~~IIFv~~r~ta~~L~~~L~~~~p~~~~~~~~~i~G~~~~--~~~m~~~~r~~~l~~Fr~g~~niLVaT~v~eeGI 462 (1396)
..+.++||||+++.++..+++.|... ++++..++|..+. ..+|+..+|++++++|++|++++||||+++++|+
T Consensus 359 ~~~~k~lVF~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~r~~~~~~F~~~~~~vLv~T~~~~~Gl 433 (494)
T 1wp9_A 359 KQNSKIIVFTNYRETAKKIVNELVKD-----GIKAKRFVGQASKENDRGLSQREQKLILDEFARGEFNVLVATSVGEEGL 433 (494)
T ss_dssp CTTCCEEEECSCHHHHHHHHHHHHHT-----TCCEEEECCSSCC-------CCHHHHHHHHHHHTSCSEEEECGGGGGGG
T ss_pred CCCCEEEEEECCHHHHHHHHHHHHHC-----CCCCEEEECCCCCCCCCCCCHHHHHHHHHHHHCCCCEEEEECCCCCCCC
T ss_conf 89975999976689999999999975-----9980799656654444458999999999998669946999888412588
Q ss_pred CCCCCCEEEEECCCCCHHHHHHHHHCCCCCC-CCEEEEEECCCCCHHHHHHHHHHHHHHH
Q ss_conf 7875358999379985778998640136789-8099999659943399999999988989
Q 000607 463 DVQSCNLVIMFDPSRTVCSFIQSRGRARMQN-SDYLLMVKSGDSTTQSRLENYLASGNKM 521 (1396)
Q Consensus 463 DIp~~~~VI~fD~p~s~~~yiQr~GRA~R~g-s~~i~lv~~~~~~~~~~i~~~~~~E~~m 521 (1396)
|+|+|++||+||+|||+..|+||.|||+|.| +.++.++..++.+.. .+......++.|
T Consensus 434 dl~~~~~Vi~~d~~~~~~~~~Qr~GR~~R~g~g~~~~l~~~~t~ee~-~~~~~~~k~~~~ 492 (494)
T 1wp9_A 434 DVPEVDLVVFYEPVPSAIRSIQRRGRTGRHMPGRVIILMAKGTRDEA-YYWSSRQKEKIM 492 (494)
T ss_dssp GSTTCCEEEESSCCHHHHHHHHHHTTSCSCCCSEEEEEEETTSHHHH-HHHHCC------
T ss_pred CCHHCCEEEEECCCCCHHHHHHHHHHCCCCCCCEEEEEEECCCHHHH-HHHHHHHHHHHH
T ss_conf 71437989992898878999998752257788469999956987899-999888789873
No 9
>3c4b_A Endoribonuclease dicer; RNAse, dsRNA binding protein, ATP-binding, endonuclease, HEL hydrolase, nucleotide-binding, phosphoprotein, RN binding; HET: MSE; 1.68A {Mus musculus} PDB: 3c4t_A 2eb1_A
Probab=1.00 E-value=1 Score=345.43 Aligned_cols=239 Identities=39% Similarity=0.526 Sum_probs=193.9
Q ss_pred HHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHCCCH
Q ss_conf 72999998819511797899997326888889898864113455577767999999998499999217999999920916
Q 000607 1149 VNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSASVNND 1228 (1396)
Q Consensus 1149 ~~~~~le~~lgy~f~~~~Ll~~AltH~S~~~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~L~~lrs~lv~n~ 1228 (1396)
..+..||++|||+|+|+.||.+||||+||.......|||||||||||||+++|++|||.+||++++|.||.+|+++|||.
T Consensus 13 ~~l~~le~~lgy~F~~~~LL~~AlTH~S~~~~~~~~~neRLEfLGDaVL~l~v~~~L~~~~p~~~~g~Lt~lrs~lV~~~ 92 (265)
T 3c4b_A 13 SGFETFEKKINYRFKNKAYLLQAFTHASYHYNTITDCYQRLEFLGDAILDYLITKHLYEDPRQHSPGVLTDLRSALVNNT 92 (265)
T ss_dssp TTHHHHHHHHTCCCSSHHHHHHHHBCTTCTTCCSSCCSHHHHHHHHHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHSSHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHH
T ss_conf 78999999959805988899998268576778888750768887699999999999998589999788799999997559
Q ss_pred HHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCC-----------CCCCCCCCCCCCCHHHHHHHHHHHHHEEEEC
Q ss_conf 89999998398157730893577878776865432016-----------9887765446897146789999765025506
Q 000607 1229 CYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSL-----------GSTFGWESVTSFPKALGDIIESLAGAIFVDS 1297 (1396)
Q Consensus 1229 ~la~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~-----------~~~~~~~~~~~~~k~l~D~~EA~iGAi~~D~ 1297 (1396)
+||.+|+++||++++++.++.+...+..|++....... +....+......||+++|+|||+|||||+|+
T Consensus 93 ~La~~a~~lgl~~~l~~~~~~l~~~i~~f~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~laD~~EAliGAiylD~ 172 (265)
T 3c4b_A 93 IFASLAVKYDYHKYFKAVSPELFHVIDDFVKFQLEKNEMQGMDSELRRSEEDEEKEEDIEVPKAMGDIFESLAGAIYMDS 172 (265)
T ss_dssp HHHHHHHHTTGGGTCBCCCHHHHHHHHHHHHHHHHHHC------------------CCSCCCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCHHHHHHHCCHHHHHHHHHHHHHHHHHHHHCCHHHHHHHCCHHHHHHCCCCCCHHHHHHHHHHHHHEEEEC
T ss_conf 99999998495999872284679999999998765421000147765210012220234451499999999761501226
Q ss_pred CCCHHHHHHHHHHCCCCCCCCC--CCCCCCHHHHHHHHHHCCCCCCCCEEECCCCCEEEEEEEEECCEEEEEEEEECCHH
Q ss_conf 9886999997631014565766--43579255999999835998776522205896089999999999999788626999
Q 000607 1298 GCNREVVFQSIRPLLEPMITPE--TMRFHPVRELTEYCQKNHFSMKKPVASRISGKAAVTVEVQANGRLFEHTFLDADKK 1375 (1396)
Q Consensus 1298 g~~~~~~~~~~~~~l~~~~~~~--~~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~~~~~~~v~~~~~~~~~~g~g~skk 1375 (1396)
|++++.+|+|+.+++.|.++.. ..+.+|+++|+++++... .+........+.|+|+|+++|+.++ .|.|.|||
T Consensus 173 G~~~~~~~~~i~~~~~~~i~~~~~~~~k~~l~el~~~~~~~~----~~~~~~~~~~~~f~v~v~v~~~~~~-~G~G~SkK 247 (265)
T 3c4b_A 173 GMSLEVVWQVYYPMMQPLIEKFSANVPRSPVRELLEMEPETA----KFSPAERTYDGKVRVTVEVVGKGKF-KGVGRSYR 247 (265)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHCTTTE----EECCCEECTTSCEEEEEEETTTEEE-EEEESSHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCC----EEEECCCCCCCCEEEEEEEECCEEE-EEEECCHH
T ss_conf 998899999999999999986764179888999998656886----4630450578838999999443489-98609999
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 99999999999994420
Q 000607 1376 TAKKVACKEVLKSLRAS 1392 (1396)
Q Consensus 1376 ~Ak~~AA~~aL~~L~~~ 1392 (1396)
+|++.||+.||++|+..
T Consensus 248 ~Aeq~AA~~AL~~l~~~ 264 (265)
T 3c4b_A 248 IAKSAAARRALRSLKAN 264 (265)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHC
T ss_conf 99999999999998647
No 10
>3n3w_A Ribonuclease III; nuclease domain, ribonuclase III, IDP90862, csgid, structura genomics; 2.21A {Campylobacter jejuni subsp}
Probab=1.00 E-value=1 Score=343.77 Aligned_cols=220 Identities=29% Similarity=0.404 Sum_probs=193.3
Q ss_pred HHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 44477299999881951179789999732688888989886411345557776799999999849999921799999992
Q 000607 1145 AERLVNVRHLESLLNYSFRDPSLLVEALTHGSYMLPEIPRCYQRLEFLGDAVLDYLITVYLYNKYPGLSPGYLTDMRSAS 1224 (1396)
Q Consensus 1145 ~~~~~~~~~le~~lgy~f~~~~Ll~~AltH~S~~~~~~~~~yerLefLGDavL~~~v~~~l~~~~p~~~~~~L~~lrs~l 1224 (1396)
++...++..||++|||+|+|+.||.+||||+||. + ..+||||||||||||+++|+++||.+||+.++|.|+.+|+.+
T Consensus 22 ~~~~~~l~~le~~lgy~F~~~~LL~~AlTH~S~~-~--~~~neRLefLGDavL~~~v~~~L~~~~p~~~eg~Ls~~r~~l 98 (248)
T 3n3w_A 22 SNAMKNIEKLEQSLTYEFKDKNLLIHALTHKSFK-K--SYNNERLEFLGDAVLDLVVGEYLFHKFAKDAEGDLSKLRAAL 98 (248)
T ss_dssp ---CTTHHHHHHHHTCCCSSHHHHHHHTBCTTSB-T--TBCSHHHHHHHHHHHHHHHHHHHHHHTTTCSCCCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHCCCCCCHHHHHHHHCCCCCC-C--CCCCHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 9517899999999788979989999996586779-9--997379999779999999999999728998978999999999
Q ss_pred CCCHHHHHHHHHCCCCHHHHCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHHHHEEEECCCCHHHH
Q ss_conf 09168999999839815773089357787877686543201698877654468971467899997650255069886999
Q 000607 1225 VNNDCYALSSVKHGLHKHILHASHELYKRINITVDSFEKLSLGSTFGWESVTSFPKALGDIIESLAGAIFVDSGCNREVV 1304 (1396)
Q Consensus 1225 v~n~~la~~a~~~gl~~~i~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~k~l~D~~EA~iGAi~~D~g~~~~~~ 1304 (1396)
|||.+||.+|.++||+++++.++.+.... ....+|+++|+|||+|||||+|+|+ +.+
T Consensus 99 Vs~~~La~~a~~lgL~~~l~~~~~e~~~~---------------------g~~~~~~lad~fEAliGAiyld~G~--~~~ 155 (248)
T 3n3w_A 99 VNEKSFAKIANSLNLGDFILMSVAEENNG---------------------GKEKPSILSDALEAIIGAIHLEAGF--EFA 155 (248)
T ss_dssp HSHHHHHHHHHHTTGGGTCBCCHHHHHTT---------------------GGGCHHHHHHHHHHHHHHHHHHHCH--HHH
T ss_pred HCHHHHHHHHHHCCCHHHHHCCCHHHHCC---------------------CCCCCCHHHHHHHHHHHHHHHHCCH--HHH
T ss_conf 79999999999858188731585254348---------------------9999648999999999999998786--999
Q ss_pred HHHHHHCCCCCCCC---CCCCCCCHHHHHHHHHHCCCCCCCCEEECCCCC---EEEEEEEEECCEEEEEEEEECCHHHHH
Q ss_conf 99763101456576---643579255999999835998776522205896---089999999999999788626999999
Q 000607 1305 FQSIRPLLEPMITP---ETMRFHPVRELTEYCQKNHFSMKKPVASRISGK---AAVTVEVQANGRLFEHTFLDADKKTAK 1378 (1396)
Q Consensus 1305 ~~~~~~~l~~~~~~---~~~~~~p~~~L~e~~~~~~~~~~~~~~~~~~g~---~~~~~~v~~~~~~~~~~g~g~skk~Ak 1378 (1396)
++|+.+++.|.+.. .....|||+.|+|+||+.++..|.|.+..+.|+ ..|+|.|+++|+.++ .|.|.|||+||
T Consensus 156 ~~~i~~~~~~~l~~~~~~~~~~dpks~LqE~~q~~~~~~p~Y~~~~~~Gp~h~~~F~v~v~v~g~~~~-~G~G~SKK~Ae 234 (248)
T 3n3w_A 156 KTIALRLIEKNFPQIDAKILIKDYKTKLQEITQGKIGQTPQYETVRAFGPDHLKQFEIALMLDGKELA-RAIAGSKKEAQ 234 (248)
T ss_dssp HHHHHHHHHHHCC-------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCCCEEEEECCCCCCCCEEEEEEEECCEEEE-EEEECCHHHHH
T ss_conf 99999999999987501122228799999999972899982688641079989639999999999999-96648999999
Q ss_pred HHHHHHHHHHHHH
Q ss_conf 9999999999442
Q 000607 1379 KVACKEVLKSLRA 1391 (1396)
Q Consensus 1379 ~~AA~~aL~~L~~ 1391 (1396)
+.||+.||+.|+.
T Consensus 235 q~AA~~AL~~L~~ 247 (248)
T 3n3w_A 235 QMAAKIALEKLGA 247 (248)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHC
T ss_conf 9999999999874
Done!