BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000608
(1395 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q3B7T1|EDRF1_HUMAN Erythroid differentiation-related factor 1 OS=Homo sapiens GN=EDRF1
PE=1 SV=1
Length = 1238
Score = 164 bits (414), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 115/428 (26%), Positives = 208/428 (48%), Gaps = 70/428 (16%)
Query: 55 ALVPSSDTVSAPRYRMLPTETDLNRPPLVPNLPEKVLPIGSVQSKATGDPSWEGGAIASN 114
A+V S + L +TDL PP N + +G + G+
Sbjct: 51 AVVKYSSAPPRTAFARLEEKTDLKLPP--ANWLRESAKLGPAGTTILGN----------- 97
Query: 115 LSRKCEALAVSGLV-----EYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVL 169
S+K + + G+ G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L
Sbjct: 98 -SKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLL 156
Query: 170 NYGADVEE----------------------GEKLIRRHGNQSKCADQSLFLNFAMHSVRM 207
+ D++E +K R+ ++ +++ F +S+
Sbjct: 157 D-ELDIQELFMRSSQTGDWTWLKEFYQRLIDQKWQRKKKSKEHWYQKAILSKFLYYSING 215
Query: 208 EACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWD 267
+ P + S +E+Q +SS QT D F V +D S
Sbjct: 216 DGAAQPVS--STAEQQESSSS----------DQTNDSEGASWPAPFEMPSSVSEDPSA-- 261
Query: 268 SRKNKRNKNHDPVKKASHVGEKPR-----CSIQESEKHRRVGNDGFLRVLFWQFHNFRML 322
++ ++ +P HV P+ + E + + ND F+R + W F + ML
Sbjct: 262 --SSQGSEPLEPSYIVGHVASAPKEQNLITLFNDGEHSQGLKND-FVRNILWTFEDIHML 318
Query: 323 LGSDLLLFSNEKYVAVSLHLWDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGY 382
+GS++ +F +Y AVSL L D + + LT ++ WLDN++ +VPEL +C+H NG+VQ Y
Sbjct: 319 VGSNMPIFGGGRYPAVSLRLRDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKY 378
Query: 383 ELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVI 442
E++KT++I L+ + F V++ ++L FL+ NC ++ YWL+K++G D++
Sbjct: 379 EMIKTEEIPNLENSN------FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIV 432
Query: 443 RLFDLSVI 450
+L+DL+ +
Sbjct: 433 KLYDLTTL 440
Score = 35.8 bits (81), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 36/125 (28%), Positives = 51/125 (40%), Gaps = 22/125 (17%)
Query: 1046 DAENNLSSALSCYEEAVKAL--GGLPTVSAE-LQSVLKKKGWVCNEMGRI---------- 1092
D E+ LS + CYE A + L L + + E VLK+ G + NE+G
Sbjct: 801 DLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQS 860
Query: 1093 -RLERKEMEKGEH--------AFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSK 1143
RL K + E F I+ F+ + D TN L+ CN G R A+
Sbjct: 861 ERLVSKSVSAAEQQLWKKSFSCFEKGIHNFESIEDATNAALLLCNTGRLMRICAQAHCGA 920
Query: 1144 VESLK 1148
+ LK
Sbjct: 921 GDELK 925
>sp|Q5R9R1|EDRF1_PONAB Erythroid differentiation-related factor 1 OS=Pongo abelii GN=EDRF1
PE=2 SV=1
Length = 1204
Score = 159 bits (403), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 115/402 (28%), Positives = 200/402 (49%), Gaps = 52/402 (12%)
Query: 55 ALVPSSDTVSAPRYRMLPTETDLNRPPLVPNLPEKVLPIGSVQSKATGDPSWEGGAIASN 114
A+V S + L +TDL PP N + +G + G+
Sbjct: 51 AVVKYSSAPPRTAFARLEEKTDLKLPP--ANWLRESAKLGPAGTTILGN----------- 97
Query: 115 LSRKCEALAVSGLV-----EYGDDIDVISPTDILKQIFKIPYSKARLSISVHRVGQTLVL 169
S+K + + G+ G+D+DV+S ++ +K++ KIPYSK+ +S++VHR+G+TL+L
Sbjct: 98 -SKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENIKKLLKIPYSKSHVSMAVHRIGRTLLL 156
Query: 170 NYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSVRMEACDCPPTHQSPSERQANSSVL 229
+ D++E L R S+ D + F + + + E ++L
Sbjct: 157 D-ELDIQE---LFMR---SSQTGDWTWLKEFYQRLIDQKW----QRKKKSKEHWYQKAIL 205
Query: 230 PGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHD-PVKKASHVGE 288
S F+ + +G+ QQ+SS D + + P + S V E
Sbjct: 206 -----SKFLYYS---INGDGAAQPVSSTTEQQESSSSDQTNDSEGASWPAPFEMPSSVSE 257
Query: 289 KPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHLWDVARQ 348
P S Q + ND F+R + W F + ML+GS++ +F +Y AVSL L D +
Sbjct: 258 DPSASSQ------GLKND-FVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRLRDNNKP 310
Query: 349 VTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHV 408
+ LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++I L+ + F V
Sbjct: 311 INVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN------FSTKV 364
Query: 409 VQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVI 450
++ ++L FL+ NC ++ YWL+K++G D+++L+DL+ +
Sbjct: 365 IKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTL 406
>sp|Q6GQV7|EDRF1_MOUSE Erythroid differentiation-related factor 1 OS=Mus musculus GN=Edrf1
PE=2 SV=1
Length = 1239
Score = 159 bits (401), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 124/507 (24%), Positives = 234/507 (46%), Gaps = 103/507 (20%)
Query: 89 KVLPIGSVQSKATGDPSWEGGAIASNLSRKCEALAVSGLV-----EYGDDIDVISPTDIL 143
K+ P ++ A P+ G I N S+K + + G+ G+D+DV+S ++ +
Sbjct: 74 KLPPANWLRESAKLGPA--GTTILGN-SKKSKPFSSFGMAYDFIDSVGNDVDVVSDSENI 130
Query: 144 KQIFKIPYSKARLSISVHRVGQTLVLNYGADVEE----------------------GEKL 181
K++ KIPYSK+ +S++VHR+G+TL+L+ D++E +K
Sbjct: 131 KKLLKIPYSKSHVSMAVHRIGRTLLLD-ELDIQELFMRSSQTGDWTWLKEFYQRLIDQKW 189
Query: 182 IRRHGNQSKCADQSLFLNFAMHSVRMEACDCP--------------PTHQS-----PSER 222
R+ ++ +++ F +S+ + P TH+S P+
Sbjct: 190 QRKKKSKEHWYQKAILSKFLYYSINGDGAAQPVPSPAEQEESSSSQQTHESEGAAWPAPF 249
Query: 223 QANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKK 282
+ SSV D S E + GH + PK Q +++++ +N + +D
Sbjct: 250 EMPSSV--SEDPSASSQGREPLEPSCIVGHVASAPKEQNLTTLFNDGENSQGLKND---- 303
Query: 283 ASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEKYVAVSLHL 342
F+R + W F + ML+GS++ +F +Y AVSL L
Sbjct: 304 -------------------------FVRNILWTFEDIHMLVGSNMPIFGGGRYPAVSLRL 338
Query: 343 WDVARQVTPLTWLEAWLDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTP 402
D + + LT ++ WLDN++ +VPEL +C+H NG+VQ YE++KT++I L+ +
Sbjct: 339 RDNNKPINVLTGIDYWLDNLICNVPELVMCFHVNGIVQKYEMIKTEEIPNLENSN----- 393
Query: 403 AFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDLSVIPKNHSSSACDDS 462
F V++ ++L FL+ NC ++ YWL+K++G D+++L+DL+ + C+++
Sbjct: 394 -FSTKVIKDIAQNILSFLKSNCTKEGHTYWLFKASGSDIVKLYDLTTL--------CEET 444
Query: 463 TSSLPQIHRGRSDSLFSLGTLLYRIAHRLSLSMASDNR--AKCARFIKKCLDFLDEPDHL 520
+ ++ + LLY++A + + + + + C+ LD+ H
Sbjct: 445 ED------KYQNPFTMPVAILLYKVACNMMMKKNQNKKHYGTIRTLLLNCVKLLDKSRHP 498
Query: 521 VMRAFAHEQFARLILNYEEDLELTSES 547
+ A A+ + L E E +S+S
Sbjct: 499 QIIASANYMLSELFQLDEPKKEESSDS 525
Score = 37.4 bits (85), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 32/115 (27%), Positives = 48/115 (41%), Gaps = 22/115 (19%)
Query: 1046 DAENNLSSALSCYEEAVKAL--GGLPTVSAE-LQSVLKKKGWVCNEMGRIRLERKEMEKG 1102
D E+ LS + CYE A + L L + + E VLK+ G + NE+G + + +G
Sbjct: 801 DLESQLSVSCKCYEAANEILQFSDLKSQNPEHYVQVLKRMGNIRNEIGVFYMNQAAALQG 860
Query: 1103 EHA-------------------FANAINAFKEVSDYTNIILINCNLGHGRRALAE 1138
E F I+ F+ + D TN L+ CN G R A+
Sbjct: 861 ERVVSKSVSAAEQQLWKKSFSCFEKGIHNFESIDDATNAALLLCNTGRLMRVCAQ 915
>sp|Q89QJ5|GLNE_BRAJA Glutamate-ammonia-ligase adenylyltransferase OS=Bradyrhizobium
japonicum (strain USDA 110) GN=glnE PE=3 SV=1
Length = 995
Score = 37.0 bits (84), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 38/153 (24%), Positives = 70/153 (45%), Gaps = 12/153 (7%)
Query: 735 DNKLWKLVLLLGESYLALGQAYKEDGQLHQALKTVELACSVYGSMPQHREDTKFISSMTK 794
+ L LV L+ + LG+ QL L + +G+MP RE + +++ +
Sbjct: 578 NRDLVALVALVLGAAPRLGEMLARQPQLMDGL----IDPRFFGAMPDRRELSGRLAATVQ 633
Query: 795 GSLSPIVFTDRRKMTGSFVGDMKEVNSSSNDGCLNSEQLSSAYLFWARAWT-----LVGD 849
+ S F DR ++ G + + + G ++++Q S+A+ A LV D
Sbjct: 634 DAASYEEFLDRLRLFGQ--ESLFLIGTRILSGTVSAQQASTAFADVAEGVVHTVHDLVAD 691
Query: 850 VYVEFH-MIKGKEISIQAERKPSTRELKMSSEV 881
+ H IKG+E +I A + +RE+ SS++
Sbjct: 692 RFAAQHGRIKGQETAIIAMGRLGSREMTASSDL 724
>sp|Q6CRY2|MED14_KLULA Mediator of RNA polymerase II transcription subunit 14
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=RGR1 PE=3
SV=1
Length = 998
Score = 35.4 bits (80), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 1059 EEAVKALG--GLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV 1116
++ + LG L V + L+ +L K GW+C+++ +RL+ + + F+ I F ++
Sbjct: 459 QDLITVLGRLKLDKVDSILRHMLDKTGWICSDV--VRLKSSIVPSTDSTFSKDI--FVKL 514
Query: 1117 SDY-TNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYY 1175
D+ +N L+ + + E+ + K+ S+K + M K+ + T+KL +++ Y
Sbjct: 515 KDWPSNWFLVLTIISSTNTCIVEKRIGKILSVKGVWKLKYMDKKNVITSKL---DTMTYP 571
Query: 1176 RAAKLQLNSL 1185
+ LQ++ L
Sbjct: 572 KMLTLQISIL 581
>sp|Q8A988|SYP_BACTN Proline--tRNA ligase OS=Bacteroides thetaiotaomicron (strain ATCC
29148 / DSM 2079 / NCTC 10582 / E50 / VPI-5482) GN=proS
PE=3 SV=1
Length = 497
Score = 33.9 bits (76), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 17/116 (14%)
Query: 927 VSIAYGRKHNKRSHAKSASYSLQGDPADSFLNCKDENTKSLDNGNLQLNRGDG------T 980
+S+ Y NKR K A Y L+G P + +D L+N +++ R D T
Sbjct: 336 ISVKYDNADNKRPGFKFADYELKGVPVRLVMGGRD-----LENNTMEVMRRDTLEKETVT 390
Query: 981 LMGASNVISEKLEDLNATNSKRVEHTSGTHDVESKVSTQVEFASRDKPKVKNGGIF 1036
G + + LE++ A K+ D + T V+ K K++ GG
Sbjct: 391 CDGIETYVQKLLEEIQANIYKK------ALDYRNSKITTVDTYEEFKEKIEEGGFI 440
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 506,323,719
Number of Sequences: 539616
Number of extensions: 21360128
Number of successful extensions: 57536
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 46
Number of HSP's that attempted gapping in prelim test: 57404
Number of HSP's gapped (non-prelim): 147
length of query: 1395
length of database: 191,569,459
effective HSP length: 130
effective length of query: 1265
effective length of database: 121,419,379
effective search space: 153595514435
effective search space used: 153595514435
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 68 (30.8 bits)