Query 000608
Match_columns 1395
No_of_seqs 74 out of 76
Neff 2.7
Searched_HMMs 46136
Date Mon Apr 1 20:31:26 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000608.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000608hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF14938 SNAP: Soluble NSF att 88.3 1.3 2.8E-05 48.5 7.2 133 1162-1326 132-271 (282)
2 PF13424 TPR_12: Tetratricopep 83.8 1.7 3.8E-05 38.0 4.4 58 1051-1115 21-78 (78)
3 KOG1982 Nuclear 5'-3' exoribon 83.4 44 0.00095 39.8 16.5 127 305-438 192-332 (359)
4 PRK11788 tetratricopeptide rep 80.8 3.3 7.1E-05 45.5 6.2 27 1085-1111 109-135 (389)
5 TIGR00990 3a0801s09 mitochondr 75.3 6.5 0.00014 47.4 6.9 120 1081-1216 329-451 (615)
6 TIGR00990 3a0801s09 mitochondr 74.0 16 0.00035 44.1 9.8 130 1052-1215 348-484 (615)
7 TIGR02521 type_IV_pilW type IV 73.8 12 0.00027 36.3 7.2 50 1050-1113 46-95 (234)
8 PRK11189 lipoprotein NlpI; Pro 71.1 12 0.00026 41.5 7.3 106 1051-1177 80-190 (296)
9 TIGR02917 PEP_TPR_lipo putativ 70.3 29 0.00063 41.0 10.4 31 1082-1112 464-494 (899)
10 KOG4626 O-linked N-acetylgluco 69.6 47 0.001 42.4 12.2 166 1049-1225 198-408 (966)
11 PRK11788 tetratricopeptide rep 69.4 17 0.00038 40.0 8.0 109 1053-1178 53-167 (389)
12 PLN03077 Protein ECB2; Provisi 67.5 32 0.0007 43.3 10.7 234 1084-1379 525-772 (857)
13 TIGR02917 PEP_TPR_lipo putativ 67.5 37 0.0008 40.1 10.5 16 1199-1214 636-651 (899)
14 KOG1840 Kinesin light chain [C 67.0 18 0.00038 44.5 8.1 154 1088-1282 246-416 (508)
15 KOG1840 Kinesin light chain [C 64.8 58 0.0013 40.2 11.8 165 1057-1280 180-349 (508)
16 cd07627 BAR_Vps5p The Bin/Amph 63.7 1.3E+02 0.0027 32.8 12.9 183 1046-1296 15-199 (216)
17 PF10505 NARG2_C: NMDA recepto 61.5 56 0.0012 36.5 9.9 129 312-447 17-164 (220)
18 PF13424 TPR_12: Tetratricopep 58.1 1.9 4.1E-05 37.8 -1.5 48 1083-1130 5-53 (78)
19 TIGR02521 type_IV_pilW type IV 57.3 23 0.0005 34.4 5.6 49 1050-1112 80-128 (234)
20 PF07719 TPR_2: Tetratricopept 56.6 14 0.0003 27.6 3.1 30 747-776 2-31 (34)
21 PRK02603 photosystem I assembl 52.6 10 0.00022 38.4 2.4 51 1051-1112 51-101 (172)
22 PF13181 TPR_8: Tetratricopept 49.8 19 0.00042 27.1 3.0 29 747-775 2-30 (34)
23 PRK10049 pgaA outer membrane p 49.4 36 0.00077 42.9 6.8 28 748-775 51-78 (765)
24 PRK04841 transcriptional regul 48.6 1.3E+02 0.0029 37.7 11.4 84 1051-1143 468-556 (903)
25 PF13429 TPR_15: Tetratricopep 47.8 30 0.00066 37.3 5.2 119 1082-1214 145-264 (280)
26 cd00189 TPR Tetratricopeptide 47.7 13 0.00029 29.7 1.9 27 1086-1112 3-29 (100)
27 KOG2002 TPR-containing nuclear 47.5 1.3E+02 0.0029 40.0 11.2 138 1050-1212 627-771 (1018)
28 PF13428 TPR_14: Tetratricopep 45.8 22 0.00047 29.1 2.9 30 747-776 2-31 (44)
29 PRK02603 photosystem I assembl 42.4 23 0.0005 35.9 3.2 63 1052-1121 89-153 (172)
30 KOG1173 Anaphase-promoting com 41.3 28 0.0006 43.5 4.0 89 1085-1214 416-505 (611)
31 PF13414 TPR_11: TPR repeat; P 40.9 35 0.00075 29.1 3.5 49 1049-1111 17-66 (69)
32 PRK11447 cellulose synthase su 39.5 40 0.00087 44.3 5.3 93 1051-1147 319-414 (1157)
33 PRK04841 transcriptional regul 39.4 1.3E+02 0.0028 37.8 9.3 60 1086-1146 576-640 (903)
34 PF13432 TPR_16: Tetratricopep 38.8 24 0.00053 29.9 2.3 49 1050-1112 12-60 (65)
35 CHL00033 ycf3 photosystem I as 38.4 42 0.00092 33.7 4.2 26 1087-1112 39-64 (168)
36 PF14938 SNAP: Soluble NSF att 36.8 5.6E+02 0.012 28.6 12.8 53 1033-1118 18-70 (282)
37 PF02259 FAT: FAT domain; Int 33.9 6.4E+02 0.014 27.7 12.5 100 1197-1336 244-343 (352)
38 PF12688 TPR_5: Tetratrico pep 33.2 1E+02 0.0022 31.3 5.8 95 1052-1177 18-118 (120)
39 PF13374 TPR_10: Tetratricopep 33.0 28 0.0006 26.7 1.6 31 1086-1116 5-35 (42)
40 PRK15174 Vi polysaccharide exp 32.4 2.1E+02 0.0045 35.9 9.6 59 1085-1144 112-170 (656)
41 PF13174 TPR_6: Tetratricopept 32.1 44 0.00096 24.6 2.5 26 747-772 1-26 (33)
42 PRK15174 Vi polysaccharide exp 31.6 1.8E+02 0.004 36.3 8.9 37 1303-1340 423-459 (656)
43 CHL00033 ycf3 photosystem I as 30.1 37 0.00081 34.1 2.4 64 1052-1122 89-154 (168)
44 KOG2479 Translation initiation 30.1 1.6E+02 0.0034 36.5 7.6 85 357-452 435-528 (549)
45 smart00012 PTPc_DSPc Protein t 28.8 2.4E+02 0.0053 25.3 7.1 33 1104-1136 20-55 (105)
46 smart00404 PTPc_motif Protein 28.8 2.4E+02 0.0053 25.3 7.1 33 1104-1136 20-55 (105)
47 PF13176 TPR_7: Tetratricopept 27.9 62 0.0013 25.7 2.8 24 748-771 1-24 (36)
48 PF13431 TPR_17: Tetratricopep 27.7 29 0.00063 27.7 0.9 22 746-767 13-34 (34)
49 smart00028 TPR Tetratricopepti 27.4 72 0.0016 21.1 2.7 26 747-772 2-27 (34)
50 cd09241 BRO1_ScRim20-like Prot 27.0 5.2E+02 0.011 30.3 11.0 134 1034-1200 143-285 (355)
51 cd00127 DSPc Dual specificity 26.4 1.9E+02 0.0042 27.8 6.4 17 1120-1136 81-97 (139)
52 PF00515 TPR_1: Tetratricopept 26.3 39 0.00084 25.6 1.3 28 1085-1112 3-30 (34)
53 PRK12370 invasion protein regu 25.1 61 0.0013 39.2 3.3 85 1050-1150 319-404 (553)
54 KOG1920 IkappaB kinase complex 24.7 4.7E+02 0.01 36.0 11.0 250 1052-1314 890-1218(1265)
55 cd00189 TPR Tetratricopeptide 24.3 64 0.0014 25.8 2.3 29 748-776 2-30 (100)
56 PF13374 TPR_10: Tetratricopep 23.7 1E+02 0.0022 23.6 3.2 29 748-776 4-32 (42)
57 PF14559 TPR_19: Tetratricopep 23.6 71 0.0015 27.1 2.6 26 747-772 26-51 (68)
58 PF07721 TPR_4: Tetratricopept 23.3 70 0.0015 24.1 2.2 23 748-770 3-25 (26)
59 PF00515 TPR_1: Tetratricopept 22.8 95 0.0021 23.5 2.9 29 747-775 2-30 (34)
60 COG0161 BioA Adenosylmethionin 22.6 48 0.001 40.5 1.9 69 1126-1211 55-131 (449)
61 PRK11447 cellulose synthase su 22.5 57 0.0012 43.0 2.6 51 1050-1114 284-334 (1157)
62 PLN03081 pentatricopeptide (PP 21.8 65 0.0014 39.8 2.7 141 1050-1214 333-478 (697)
63 PF13181 TPR_8: Tetratricopept 21.1 55 0.0012 24.7 1.2 30 1084-1113 2-31 (34)
64 PF01535 PPR: PPR repeat; Int 20.7 1E+02 0.0022 22.4 2.5 24 748-771 2-25 (31)
65 KOG4626 O-linked N-acetylgluco 20.6 4.5E+02 0.0097 34.4 9.2 136 1053-1192 304-472 (966)
66 PF07719 TPR_2: Tetratricopept 20.2 61 0.0013 24.1 1.3 28 1086-1113 4-31 (34)
No 1
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=88.26 E-value=1.3 Score=48.53 Aligned_cols=133 Identities=24% Similarity=0.314 Sum_probs=61.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhhcccchhhhccccccccccccccccc
Q 000608 1162 ETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRT 1241 (1395)
Q Consensus 1162 ~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmllare~~~~~~ye~g~~~~~~~~~~~~~ 1241 (1395)
+.|-.-|.+|+.+|.... .....++++.+.|..|.++|.. +.-.+.||.-+-.-.
T Consensus 132 e~Ai~~Y~~A~~~y~~e~-------------~~~~a~~~~~~~A~l~~~l~~y----~~A~~~~e~~~~~~l-------- 186 (282)
T PF14938_consen 132 EKAIEYYQKAAELYEQEG-------------SPHSAAECLLKAADLYARLGRY----EEAIEIYEEVAKKCL-------- 186 (282)
T ss_dssp HHHHHHHHHHHHHHHHTT--------------HHHHHHHHHHHHHHHHHTT-H----HHHHHHHHHHHHTCC--------
T ss_pred HHHHHHHHHHHHHHHHCC-------------ChhhHHHHHHHHHHHHHHhCCH----HHHHHHHHHHHHHhh--------
Confidence 334445666666664322 2235678899999999999833 233444442111000
Q ss_pred cccccccccchhHHHHHHHHHHHHhhhhhhhhHHhHHHHHHh--h--cc--chhhHhhhccccccCCCCCCchHHHHHHH
Q 000608 1242 RKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLAC--Y--QR--DCFLKFLESDHKKNNLPKGENSFVHRVRQ 1315 (1395)
Q Consensus 1242 ~~~~~~~eisa~daireal~~yeslge~rkqeaa~a~fqlac--y--qr--d~cl~fl~~~~~~~~~~k~e~~~~q~~k~ 1315 (1395)
..++ ...++.+.+=.|.-+|=..|+.=.-+.+|.-++--+ + .| .++-..|+.. .....+.+-..+++
T Consensus 187 ~~~l--~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~-----~~~D~e~f~~av~~ 259 (282)
T PF14938_consen 187 ENNL--LKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAY-----EEGDVEAFTEAVAE 259 (282)
T ss_dssp CHCT--TGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHH-----HTT-CCCHHHHCHH
T ss_pred cccc--cchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHH-----HhCCHHHHHHHHHH
Confidence 0112 234677776666666666665422222222222111 1 11 1222223332 23344557777888
Q ss_pred hhhHHH-HhHHh
Q 000608 1316 YASLAE-RNWQK 1326 (1395)
Q Consensus 1316 yaslae-rnwqk 1326 (1395)
|-++-. -+|+-
T Consensus 260 ~d~~~~ld~w~~ 271 (282)
T PF14938_consen 260 YDSISRLDNWKT 271 (282)
T ss_dssp HTTSS---HHHH
T ss_pred HcccCccHHHHH
Confidence 876643 34543
No 2
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=83.77 E-value=1.7 Score=37.97 Aligned_cols=58 Identities=19% Similarity=0.279 Sum_probs=44.3
Q ss_pred hhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHH
Q 000608 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKE 1115 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~e 1115 (1395)
.-.|+.||++|......++.... ..+|..+.||......++.++|+..|.+|++.|++
T Consensus 21 ~~~A~~~~~~al~~~~~~~~~~~-------~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i~~k 78 (78)
T PF13424_consen 21 YDEALDYYEKALDIEEQLGDDHP-------DTANTLNNLGECYYRLGDYEEALEYYQKALDIFEK 78 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTTHHH-------HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHCCCCH-------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhcC
Confidence 45799999999887655554322 23667777777778888899999999999998874
No 3
>KOG1982 consensus Nuclear 5'-3' exoribonuclease-interacting protein, Rai1p [Replication, recombination and repair]
Probab=83.39 E-value=44 Score=39.83 Aligned_cols=127 Identities=17% Similarity=0.246 Sum_probs=87.4
Q ss_pred CCCcceEEeeeecccceecccccce-ecCC------CceeEEEeeccc-ccccCc-----hhhHHHHHHhhhcCCCcEEE
Q 000608 305 NDGFLRVLFWQFHNFRMLLGSDLLL-FSNE------KYVAVSLHLWDV-ARQVTP-----LTWLEAWLDNVMASVPELAI 371 (1395)
Q Consensus 305 ~~~F~Rnl~WtFedi~MLVGSDmPI-Fg~~------~~PaVSLRLrD~-skpIn~-----LTgLDyWLDNlM~NVPElam 371 (1395)
..+|-.++.=.+++.++|.|.-+-. |..+ ++--|-|+-+-+ ..|... ...++.||--.+.+||.|++
T Consensus 192 ~~ef~~V~r~~l~~~~~l~~~evdc~~~~~~~~~~~~~~~VELKts~~~~~~~~~~~~er~K~~KwW~QsFL~Gi~~Iii 271 (359)
T KOG1982|consen 192 NEEFCSVVRTRLGGSILLFGAEVDCIDYSGPNDFDKRGNYVELKTSYKEMGPSQVDKFERLKLLKWWLQSFLVGIPRIII 271 (359)
T ss_pred cceeeeeeeeccCCceEecccceeeeccCCCcChhhcCceEEEEeehhhcCccccchhhhhHHHHHHHHHHhcCCCeEEE
Confidence 4678888888899999998876633 3331 223566765531 111111 36789999999999999999
Q ss_pred EEe-ecceeeeeeeecccccccccCCCCCCCCCcChhhHHhhHHHHHHHHhhhccCCCceEEEEeeCC
Q 000608 372 CYH-ENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAG 438 (1395)
Q Consensus 372 CyH-~nGIVQ~YELiKTeDIP~Leg~s~~gas~FdPqVV~~~AqnILsFLKsNCTKdGhTYWLfK~~g 438 (1395)
=+. .||-|+..+-+++.|||.... .++|.+.-+..-.||+||..-=.+++---.+|....
T Consensus 272 G~Rddng~v~~i~~~~v~~l~k~~~-------kW~~~~~~~~l~~~l~~i~~~l~~~~d~~~v~~~~f 332 (359)
T KOG1982|consen 272 GFRDDNGHVEEIDTIEVRDLPKNKF-------KWNPSVCLNFLFTILSWILKTLPADDDPCLVFLFSF 332 (359)
T ss_pred EEecCCCceeeeeeeehhhccccCC-------CCCHHHHHHHHHHHHHHHHHhcccCCCceEEEEeec
Confidence 776 467777776666666665532 489999999999999999887777664333443333
No 4
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=80.83 E-value=3.3 Score=45.52 Aligned_cols=27 Identities=19% Similarity=0.384 Sum_probs=15.7
Q ss_pred ccccchhhhhhhhccchhhHHHHHHHH
Q 000608 1085 VCNEMGRIRLERKEMEKGEHAFANAIN 1111 (1395)
Q Consensus 1085 v~nelgr~rle~~~l~~ae~af~~ai~ 1111 (1395)
+.+.||......+++.+|+.+|..++.
T Consensus 109 ~~~~La~~~~~~g~~~~A~~~~~~~l~ 135 (389)
T PRK11788 109 ALQELGQDYLKAGLLDRAEELFLQLVD 135 (389)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHc
Confidence 445556666666666666666665553
No 5
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=75.27 E-value=6.5 Score=47.37 Aligned_cols=120 Identities=19% Similarity=0.185 Sum_probs=68.1
Q ss_pred hhccccccchhhhhhhhccchhhHHHHHHHHHHHHhc-cCccEEEEEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHH
Q 000608 1081 KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS-DYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQ 1159 (1395)
Q Consensus 1081 k~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~-d~~niilincnlghgrralaee~~s~~~~~~~h~~~~~~y~~ 1159 (1395)
...|+.+-+|...+..++.++|...|..||...-... .|.++..|+ +.-|+-.-|.+...+.-.. .+-...+|..
T Consensus 329 ~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~--~~~g~~~eA~~~~~~al~~--~p~~~~~~~~ 404 (615)
T TIGR00990 329 KEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMN--LELGDPDKAEEDFDKALKL--NSEDPDIYYH 404 (615)
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH--HHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 3457778889999999999999999999987532211 111222222 2234444555555555332 2211222222
Q ss_pred --HHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhh
Q 000608 1160 --ALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLA 1216 (1395)
Q Consensus 1160 --~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmlla 1216 (1395)
.+-...-.|.+|+++|..|... -|. .-+++.++|.+|+++|..-.
T Consensus 405 lg~~~~~~g~~~~A~~~~~kal~l----------~P~--~~~~~~~la~~~~~~g~~~e 451 (615)
T TIGR00990 405 RAQLHFIKGEFAQAGKDYQKSIDL----------DPD--FIFSHIQLGVTQYKEGSIAS 451 (615)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHc----------Ccc--CHHHHHHHHHHHHHCCCHHH
Confidence 1222344677888888766421 111 12567889999999886543
No 6
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=74.02 E-value=16 Score=44.10 Aligned_cols=130 Identities=18% Similarity=0.110 Sum_probs=65.6
Q ss_pred hhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCch
Q 000608 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGH 1131 (1395)
Q Consensus 1052 ~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlgh 1131 (1395)
-.|+.+|+.|...- |.. .+.+..+|...++.+++.+|+..|..||...- +++ -+..++|-
T Consensus 348 ~eA~~~~~kal~l~---P~~-----------~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p---~~~---~~~~~lg~ 407 (615)
T TIGR00990 348 LEALADLSKSIELD---PRV-----------TQSYIKRASMNLELGDPDKAEEDFDKALKLNS---EDP---DIYYHRAQ 407 (615)
T ss_pred HHHHHHHHHHHHcC---CCc-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC---CCH---HHHHHHHH
Confidence 35778887766543 432 23444566666777788899999988877521 121 22333332
Q ss_pred -----hhHHHHHHHHHHHhhhhhhhhhHHHHHH-H-HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHH
Q 000608 1132 -----GRRALAEEMVSKVESLKIHTIFQNMYKQ-A-LETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1395)
Q Consensus 1132 -----grralaee~~s~~~~~~~h~~~~~~y~~-~-l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ 1204 (1395)
|+-.-|.+...+.-.+.-..+ .++.+ + +....-.|.+|+.+|..|... . | -.-+++..+
T Consensus 408 ~~~~~g~~~~A~~~~~kal~l~P~~~--~~~~~la~~~~~~g~~~eA~~~~~~al~~-------~---P--~~~~~~~~l 473 (615)
T TIGR00990 408 LHFIKGEFAQAGKDYQKSIDLDPDFI--FSHIQLGVTQYKEGSIASSMATFRRCKKN-------F---P--EAPDVYNYY 473 (615)
T ss_pred HHHHcCCHHHHHHHHHHHHHcCccCH--HHHHHHHHHHHHCCCHHHHHHHHHHHHHh-------C---C--CChHHHHHH
Confidence 344444444444332221111 11111 0 111112366677777665431 1 1 113567777
Q ss_pred HHHHHHHhhhh
Q 000608 1205 AHTYLRLGMLL 1215 (1395)
Q Consensus 1205 ahtylrlgmll 1215 (1395)
+..|+.+|..-
T Consensus 474 g~~~~~~g~~~ 484 (615)
T TIGR00990 474 GELLLDQNKFD 484 (615)
T ss_pred HHHHHHccCHH
Confidence 77777777543
No 7
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=73.80 E-value=12 Score=36.25 Aligned_cols=50 Identities=20% Similarity=0.185 Sum_probs=33.4
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHH
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af 1113 (1395)
+...|+.+|+++.+-- |.. .++.+.+|...+..+++.+|+..|..|+...
T Consensus 46 ~~~~A~~~~~~~l~~~---p~~-----------~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 95 (234)
T TIGR02521 46 DLEVAKENLDKALEHD---PDD-----------YLAYLALALYYQQLGELEKAEDSFRRALTLN 95 (234)
T ss_pred CHHHHHHHHHHHHHhC---ccc-----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 3445666666664432 432 2455567888888889999999999888753
No 8
>PRK11189 lipoprotein NlpI; Provisional
Probab=71.11 E-value=12 Score=41.50 Aligned_cols=106 Identities=15% Similarity=0.120 Sum_probs=65.7
Q ss_pred hhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCc
Q 000608 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlg 1130 (1395)
...|+.+|++|.+-- |.. ..+.+.+|......++..+|..+|..||..- +|-.-..+|+|
T Consensus 80 ~~~A~~~~~~Al~l~---P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~------P~~~~a~~~lg 139 (296)
T PRK11189 80 RALARNDFSQALALR---PDM-----------ADAYNYLGIYLTQAGNFDAAYEAFDSVLELD------PTYNYAYLNRG 139 (296)
T ss_pred HHHHHHHHHHHHHcC---CCC-----------HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC------CCCHHHHHHHH
Confidence 446777887776643 443 3566889999999999999999999998642 12122345555
Q ss_pred h-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000608 1131 H-----GRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRA 1177 (1395)
Q Consensus 1131 h-----grralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~a 1177 (1395)
. ||-..|.+...+.-...-.+.... +-..+..++..+-+|+.+|..
T Consensus 140 ~~l~~~g~~~eA~~~~~~al~~~P~~~~~~-~~~~l~~~~~~~~~A~~~l~~ 190 (296)
T PRK11189 140 IALYYGGRYELAQDDLLAFYQDDPNDPYRA-LWLYLAESKLDPKQAKENLKQ 190 (296)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHH-HHHHHHHccCCHHHHHHHHHH
Confidence 4 777888887777655443332211 222233344456666666644
No 9
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=70.32 E-value=29 Score=40.97 Aligned_cols=31 Identities=26% Similarity=0.440 Sum_probs=25.2
Q ss_pred hccccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1082 KGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1082 ~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
...+++.+|......++..+|+..|..|+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 494 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSI 494 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhh
Confidence 3457788888899999999999999888754
No 10
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=69.65 E-value=47 Score=42.39 Aligned_cols=166 Identities=20% Similarity=0.284 Sum_probs=94.7
Q ss_pred hhhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchh--------------------hHHHHH
Q 000608 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKG--------------------EHAFAN 1108 (1395)
Q Consensus 1049 ~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~a--------------------e~af~~ 1108 (1395)
--|..|-.||-+|..+=-.|-+... ..|-|+|+-|-+-+...-+++| -.-|-.
T Consensus 198 Grl~ea~~cYlkAi~~qp~fAiaws-------nLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~ 270 (966)
T KOG4626|consen 198 GRLEEAKACYLKAIETQPCFAIAWS-------NLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDR 270 (966)
T ss_pred cccchhHHHHHHHHhhCCceeeeeh-------hcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchH
Confidence 3466788999999888744444433 3456666666665555444443 334556
Q ss_pred HHHHHHHh-ccCccEEEEEecCc-----hhhHHHHHHHHHHHhhhhhhhhhHHHHHH---H------HHHHHHHHHHHHH
Q 000608 1109 AINAFKEV-SDYTNIILINCNLG-----HGRRALAEEMVSKVESLKIHTIFQNMYKQ---A------LETAKLEYCESLR 1173 (1395)
Q Consensus 1109 ai~af~ev-~d~~niilincnlg-----hgrralaee~~s~~~~~~~h~~~~~~y~~---~------l~~ak~ey~~sl~ 1173 (1395)
|+-++..- .--+|--...|||| -|--.||-..-.|. +...+-|.+||.+ | +..|.--|.+||+
T Consensus 271 Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykra--l~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~ 348 (966)
T KOG4626|consen 271 AVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRA--LELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALR 348 (966)
T ss_pred HHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHH--HhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHH
Confidence 66666432 22334444445544 23344444444433 2345667888875 2 3355666777776
Q ss_pred H----------HHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhhcccchhhhc
Q 000608 1174 Y----------YRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVY 1225 (1395)
Q Consensus 1174 y----------y~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmllare~~~~~~y 1225 (1395)
| .|-+++|-..+.+-..-- -+-=||++-||-.+--||-++-..+.+-+|-
T Consensus 349 l~p~hadam~NLgni~~E~~~~e~A~~ly--~~al~v~p~~aaa~nNLa~i~kqqgnl~~Ai 408 (966)
T KOG4626|consen 349 LCPNHADAMNNLGNIYREQGKIEEATRLY--LKALEVFPEFAAAHNNLASIYKQQGNLDDAI 408 (966)
T ss_pred hCCccHHHHHHHHHHHHHhccchHHHHHH--HHHHhhChhhhhhhhhHHHHHHhcccHHHHH
Confidence 6 234444444443322111 1124899999999999998887766665553
No 11
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=69.38 E-value=17 Score=40.02 Aligned_cols=109 Identities=14% Similarity=0.122 Sum_probs=56.5
Q ss_pred hhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhcc----CccEEEEEec
Q 000608 1053 SALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD----YTNIILINCN 1128 (1395)
Q Consensus 1053 ~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d----~~niilincn 1128 (1395)
.|+..|++|.+.- |.. ..+...+|...+..+++.+|...|..++..- ...+ .+...|..|-
T Consensus 53 ~A~~~~~~al~~~---p~~-----------~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~~~~~La~~~ 117 (389)
T PRK11788 53 KAIDLFIEMLKVD---PET-----------VELHLALGNLFRRRGEVDRAIRIHQNLLSRP-DLTREQRLLALQELGQDY 117 (389)
T ss_pred HHHHHHHHHHhcC---ccc-----------HHHHHHHHHHHHHcCcHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHHHHH
Confidence 4888888777642 432 1244567777778888888877777665420 0110 1122333344
Q ss_pred CchhhHHHHHHHHHHHhhhhhhhhhHHHHHH--HHHHHHHHHHHHHHHHHHH
Q 000608 1129 LGHGRRALAEEMVSKVESLKIHTIFQNMYKQ--ALETAKLEYCESLRYYRAA 1178 (1395)
Q Consensus 1129 lghgrralaee~~s~~~~~~~h~~~~~~y~~--~l~~ak~ey~~sl~yy~aa 1178 (1395)
...|+-.-|++...++....... ..++.. .+-....+|.+|+.+|..+
T Consensus 118 ~~~g~~~~A~~~~~~~l~~~~~~--~~~~~~la~~~~~~g~~~~A~~~~~~~ 167 (389)
T PRK11788 118 LKAGLLDRAEELFLQLVDEGDFA--EGALQQLLEIYQQEKDWQKAIDVAERL 167 (389)
T ss_pred HHCCCHHHHHHHHHHHHcCCcch--HHHHHHHHHHHHHhchHHHHHHHHHHH
Confidence 44456666666666665432221 122211 1222345566666666554
No 12
>PLN03077 Protein ECB2; Provisional
Probab=67.54 E-value=32 Score=43.26 Aligned_cols=234 Identities=15% Similarity=0.181 Sum_probs=113.9
Q ss_pred cccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHH-
Q 000608 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALE- 1162 (1395)
Q Consensus 1084 wv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~- 1162 (1395)
.++|-|-.-..+++++++|...|... -+.+.-++.+|-.+|..|++. .|.++..+|.+....+ -..+|...|.
T Consensus 525 ~~~naLi~~y~k~G~~~~A~~~f~~~---~~d~~s~n~lI~~~~~~G~~~--~A~~lf~~M~~~g~~P-d~~T~~~ll~a 598 (857)
T PLN03077 525 FLPNALLDLYVRCGRMNYAWNQFNSH---EKDVVSWNILLTGYVAHGKGS--MAVELFNRMVESGVNP-DEVTFISLLCA 598 (857)
T ss_pred eechHHHHHHHHcCCHHHHHHHHHhc---CCChhhHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCC-CcccHHHHHHH
Confidence 46677777778888888887777653 223333444444455555555 4556777776533221 1233443332
Q ss_pred --HHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhhcccchhhhcccccccccccccccc
Q 000608 1163 --TAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGR 1240 (1395)
Q Consensus 1163 --~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmllare~~~~~~ye~g~~~~~~~~~~~~ 1240 (1395)
.+ -.+.++++||...+.+ ..-.|+ -+.|+-+...|.|-|+ ..+|++ +++++
T Consensus 599 ~~~~-g~v~ea~~~f~~M~~~-------~gi~P~---~~~y~~lv~~l~r~G~-------~~eA~~--~~~~m------- 651 (857)
T PLN03077 599 CSRS-GMVTQGLEYFHSMEEK-------YSITPN---LKHYACVVDLLGRAGK-------LTEAYN--FINKM------- 651 (857)
T ss_pred Hhhc-ChHHHHHHHHHHHHHH-------hCCCCc---hHHHHHHHHHHHhCCC-------HHHHHH--HHHHC-------
Confidence 11 2355677776655422 222222 2555555555555554 456655 23333
Q ss_pred ccccccccccchhHHHHHHHHHHHHhhhhhhhhHHhHHHHHHhhccchhhHhhhccccccCCCCCCchHHHHHHHhhhHH
Q 000608 1241 TRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLA 1320 (1395)
Q Consensus 1241 ~~~~~~~~eisa~daireal~~yeslge~rkqeaa~a~fqlacyqrd~cl~fl~~~~~~~~~~k~e~~~~q~~k~yasla 1320 (1395)
.+..+..++.||-- ...-++.-|.|-- | .-+.++++ +.+-..|+.-++-|+.
T Consensus 652 --------~~~pd~~~~~aLl~--ac~~~~~~e~~e~----~------a~~l~~l~------p~~~~~y~ll~n~ya~-- 703 (857)
T PLN03077 652 --------PITPDPAVWGALLN--ACRIHRHVELGEL----A------AQHIFELD------PNSVGYYILLCNLYAD-- 703 (857)
T ss_pred --------CCCCCHHHHHHHHH--HHHHcCChHHHHH----H------HHHHHhhC------CCCcchHHHHHHHHHH--
Confidence 24455566665422 1111112221110 0 11223332 4445567777777764
Q ss_pred HHhHHhhhccc------CCCCCCchhhhhhhhcccceeeecccchh-----hHHHHHHHHhHhccccccc
Q 000608 1321 ERNWQKAMDFY------GPRSHPTMYLTILMERSDLSFRLSCFLHS-----NAMLETALSCLLEGRHISE 1379 (1395)
Q Consensus 1321 ernwqka~~fy------gp~thp~m~l~il~ersals~~~s~~~hs-----n~mle~al~~~legr~i~e 1379 (1395)
..+|.+|..-. |-+-.|...- |-+....=.|......|+ ..||+.-..+|-+-.++.+
T Consensus 704 ~g~~~~a~~vr~~M~~~g~~k~~g~s~-ie~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~g~~~~ 772 (857)
T PLN03077 704 AGKWDEVARVRKTMRENGLTVDPGCSW-VEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGLAGS 772 (857)
T ss_pred CCChHHHHHHHHHHHHcCCCCCCCccE-EEECCEEEEEecCCCCCcchHHHHHHHHHHHHHHHhCCcCCC
Confidence 55688765432 3343333211 111112223333344453 3467777777766666544
No 13
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=67.47 E-value=37 Score=40.14 Aligned_cols=16 Identities=13% Similarity=0.044 Sum_probs=9.7
Q ss_pred HHHHHHHHHHHHHhhh
Q 000608 1199 EVHTQFAHTYLRLGML 1214 (1395)
Q Consensus 1199 ev~tq~ahtylrlgml 1214 (1395)
+++..+|+.|.++|..
T Consensus 636 ~~~~~l~~~~~~~~~~ 651 (899)
T TIGR02917 636 LALLLLADAYAVMKNY 651 (899)
T ss_pred HHHHHHHHHHHHcCCH
Confidence 4566666666666643
No 14
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=66.98 E-value=18 Score=44.46 Aligned_cols=154 Identities=16% Similarity=0.125 Sum_probs=100.3
Q ss_pred cchhhhhhhhccchhhHHHHHHHHHHHHhccCcc----EEEE-----EecCchhhHHHHHHHHHHHhhhhhh---hhhH-
Q 000608 1088 EMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN----IILI-----NCNLGHGRRALAEEMVSKVESLKIH---TIFQ- 1154 (1395)
Q Consensus 1088 elgr~rle~~~l~~ae~af~~ai~af~ev~d~~n----iili-----ncnlghgrralaee~~s~~~~~~~h---~~~~- 1154 (1395)
-+|.-.+-.++..+|...|.+|...+.++.--+| ++|+ +|+ -||=+=|++...+..+...| ....
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~--~GKf~EA~~~~e~Al~I~~~~~~~~~~~ 323 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYK--QGKFAEAEEYCERALEIYEKLLGASHPE 323 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhc--cCChHHHHHHHHHHHHHHHHhhccChHH
Confidence 4788888999999999999999999997754333 3444 343 35666677777777766665 1111
Q ss_pred ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhhcccchhhhcccccc
Q 000608 1155 ----NMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAW 1230 (1395)
Q Consensus 1155 ----~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmllare~~~~~~ye~g~~ 1230 (1395)
-..-.++..-+-+|-+++.||-.|-..+..+-.+ ..-++|++|-+||-|+=.--...+
T Consensus 324 v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~-----------~~~~~a~~~~nl~~l~~~~gk~~e------- 385 (508)
T KOG1840|consen 324 VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE-----------DNVNLAKIYANLAELYLKMGKYKE------- 385 (508)
T ss_pred HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc-----------cchHHHHHHHHHHHHHHHhcchhH-------
Confidence 1122344555778999999998766665543333 334567777777776643333333
Q ss_pred ccccccccccccccccccccchhHHHHHHHHHHHHhhhhhhhhHHhHHHHHH
Q 000608 1231 EDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAYAYFQLA 1282 (1395)
Q Consensus 1231 ~~~~~~~~~~~~~~~~~~eisa~daireal~~yeslge~rkqeaa~a~fqla 1282 (1395)
|.+.+++|+.--++++.---.+.+..+-|||
T Consensus 386 ---------------------a~~~~k~ai~~~~~~~~~~~~~~~~~l~~la 416 (508)
T KOG1840|consen 386 ---------------------AEELYKKAIQILRELLGKKDYGVGKPLNQLA 416 (508)
T ss_pred ---------------------HHHHHHHHHHHHHhcccCcChhhhHHHHHHH
Confidence 3446777888777777655566666666765
No 15
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=64.81 E-value=58 Score=40.25 Aligned_cols=165 Identities=22% Similarity=0.242 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCchhhHHH
Q 000608 1057 CYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRAL 1136 (1395)
Q Consensus 1057 cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlghgrral 1136 (1395)
+|.....+...+--...+.-.++.+ |+...-.++++++||.-|..|++-..+.. ||---.+
T Consensus 180 ~~~~~~~~~~~~~~~~P~~~~~~~~-------La~~y~~~g~~e~A~~l~k~Al~~l~k~~------------G~~hl~v 240 (508)
T KOG1840|consen 180 TLKGLDIQAKGLGDEDPERLRTLRN-------LAEMYAVQGRLEKAEPLCKQALRILEKTS------------GLKHLVV 240 (508)
T ss_pred hHHHHHHHHHhcccCCchHHHHHHH-------HHHHHHHhccHHHHHHHHHHHHHHHHHcc------------CccCHHH
Confidence 3334444443444444444444443 88888999999999999999998733221 2222222
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhh
Q 000608 1137 AEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLA 1216 (1395)
Q Consensus 1137 aee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmlla 1216 (1395)
|..+- ++-..|. +..+|.||++.|..|=.-+. ..+=+.+-..|.|+-+|+-|+.
T Consensus 241 a~~l~----------~~a~~y~-----~~~k~~eAv~ly~~AL~i~e-----------~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 241 ASMLN----------ILALVYR-----SLGKYDEAVNLYEEALTIRE-----------EVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHH----------HHHHHHH-----HhccHHHHHHHHHHHHHHHH-----------HhcCCCCHHHHHHHHHHHHHHh
Confidence 22211 3333443 46789999999988755433 3455667788999999999998
Q ss_pred cccchhhhccccccccccccccccccccccc--cccchh---HHHHHHHHHHHHhhhhhhhhHHhHHHH
Q 000608 1217 REDTTAEVYETGAWEDISVPCEGRTRKELRK--HEVSAN---DAIREALSLYESMGDLRKQEAAYAYFQ 1280 (1395)
Q Consensus 1217 re~~~~~~ye~g~~~~~~~~~~~~~~~~~~~--~eisa~---daireal~~yeslge~rkqeaa~a~fq 1280 (1395)
+.-.+++|.+- +++ .-++++ ..++.. -++-+.-.+|++++ +=|-|--|+|
T Consensus 295 ~~GKf~EA~~~---------~e~--Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~---~~Eea~~l~q 349 (508)
T KOG1840|consen 295 KQGKFAEAEEY---------CER--ALEIYEKLLGASHPEVAAQLSELAAILQSMN---EYEEAKKLLQ 349 (508)
T ss_pred ccCChHHHHHH---------HHH--HHHHHHHhhccChHHHHHHHHHHHHHHHHhc---chhHHHHHHH
Confidence 88888877661 110 011122 222222 24566677888888 5566766766
No 16
>cd07627 BAR_Vps5p The Bin/Amphiphysin/Rvs (BAR) domain of yeast Sorting Nexin Vps5p. BAR domains are dimerization, lipid binding and curvature sensing modules found in many different proteins with diverse functions. Sorting nexins (SNXs) are Phox homology (PX) domain containing proteins that are involved in regulating membrane traffic and protein sorting in the endosomal system. SNXs differ from each other in their lipid-binding specificity, subcellular localization and specific function in the endocytic pathway. A subset of SNXs also contain BAR domains. The PX-BAR structural unit determines the specific membrane targeting of SNXs. Vsp5p is the yeast counterpart of human SNX1 and is part of the retromer complex, which functions in the endosome-to-Golgi retrieval of vacuolar protein sorting receptor Vps10p, the Golgi-resident membrane protein A-ALP, and endopeptidase Kex2. BAR domains form dimers that bind to membranes, induce membrane bending and curvature, and may also be involved in
Probab=63.67 E-value=1.3e+02 Score=32.81 Aligned_cols=183 Identities=17% Similarity=0.119 Sum_probs=101.6
Q ss_pred ccchhhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEE
Q 000608 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1395)
Q Consensus 1046 d~e~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niili 1125 (1395)
+.|.+|..+..+.+...+.= .+|-+++-..|=.|+.||-.= ....|..+-..|+++-..+.++
T Consensus 15 ~Le~~Lk~l~~~~~~l~~~r-------~ela~~~~efa~~~~~L~~~E-~~~~l~~~l~~~a~~~~~~~~~--------- 77 (216)
T cd07627 15 SLESQLKQLYKSLELVSSQR-------KELASATEEFAETLEALSSLE-LSKSLSDLLAALAEVQKRIKES--------- 77 (216)
T ss_pred HHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHhh-cchHhHHHHHHHHHHHHHHHHH---------
Confidence 44555555544444443333 233333333333333344321 1345555666666655555544
Q ss_pred EecCchhhHHHHHHHHHHHh-hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHH
Q 000608 1126 NCNLGHGRRALAEEMVSKVE-SLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1395)
Q Consensus 1126 ncnlghgrralaee~~s~~~-~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ 1204 (1395)
|+|.| ..-...+. -+..+- +|.+|++.+=..=.+++.+|-.+..+|..+....++...+
T Consensus 78 -----~~~~a--~~e~~~l~~~L~ey~----r~~~Svk~~~~~R~~~~~~~~~~~~~L~k~~~~~~Kl~~~--------- 137 (216)
T cd07627 78 -----LERQA--LQDVLTLGVTLDEYI----RSIGSVRAAFAQRQKLWQYWQSAESELSKKKAQLEKLKRQ--------- 137 (216)
T ss_pred -----HHHHH--HHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---------
Confidence 34422 22222222 333332 5566666665566678888888888888887777766211
Q ss_pred HHHHHHHhhhhhcccchhhhcccccccccccccccccccccccccc-chhHHHHHHHHHHHHhhhhhhhhHHhHHHHHHh
Q 000608 1205 AHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEV-SANDAIREALSLYESMGDLRKQEAAYAYFQLAC 1283 (1395)
Q Consensus 1205 ahtylrlgmllare~~~~~~ye~g~~~~~~~~~~~~~~~~~~~~ei-sa~daireal~~yeslge~rkqeaa~a~fqlac 1283 (1395)
| .++.+|-+.-+.+| -+.+|..+|-.-||.+++.=|.|-.--+..-+-
T Consensus 138 -----------------------~--------~s~~~K~~~~~~ei~~~e~~~~~a~~~~e~is~~~k~El~rF~~~r~~ 186 (216)
T cd07627 138 -----------------------G--------KTQQEKLNSLLSELEEAERRASELKKEFEEVSELIKSELERFERERVE 186 (216)
T ss_pred -----------------------C--------CChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 11222333455666 588999999999999999999997765555555
Q ss_pred hccchhhHhhhcc
Q 000608 1284 YQRDCFLKFLESD 1296 (1395)
Q Consensus 1284 yqrd~cl~fl~~~ 1296 (1395)
.=|+.=..|+++.
T Consensus 187 dfk~~l~~~~e~~ 199 (216)
T cd07627 187 DFRNSVEIYLESA 199 (216)
T ss_pred HHHHHHHHHHHHH
Confidence 5555555555543
No 17
>PF10505 NARG2_C: NMDA receptor-regulated gene protein 2 C-terminus; InterPro: IPR019535 The transition of neuronal cells from pre-cursor to mature state is regulated by the N-methyl-d-aspartate (NMDA) receptor, a glutamate-gated ion channel that is permeable to Ca2+. NMDA receptors probably mediate this activity by permitting expression of NARG2. NARG2 (NMDA receptor-regulated gene protein 2) is transiently expressed, being a regulatory protein that is present in the nucleus of dividing cells and then down-regulated as progenitors exit the cell cycle and begin to differentiate. NARG2 contains repeats of (S/T)PXX, (11 in mouse, 6 in human), a putative DNA-binding motif that is found in many gene-regulatory proteins including Kruppel, Hunchback and Antennapedi [].
Probab=61.46 E-value=56 Score=36.49 Aligned_cols=129 Identities=16% Similarity=0.234 Sum_probs=89.5
Q ss_pred Eeeeec----ccceecccccceec----CC---CceeEEEe--ecc---c-ccccCchhhHHHHHHhhhcCCCcEEEEEe
Q 000608 312 LFWQFH----NFRMLLGSDLLLFS----NE---KYVAVSLH--LWD---V-ARQVTPLTWLEAWLDNVMASVPELAICYH 374 (1395)
Q Consensus 312 l~WtFe----di~MLVGSDmPIFg----~~---~~PaVSLR--LrD---~-skpIn~LTgLDyWLDNlM~NVPElamCyH 374 (1395)
.+|+|+ +++|||-+.++-+. .. ++-.|++. +.- - -+.+|.-+.+..|+.-.+-.--. ..|.|
T Consensus 17 ~lw~L~~~~~~~~lLvR~~v~~~~~~~~~~~~~~~~pv~v~~KlEyq~~~G~E~lT~sEl~~~W~~~~Lr~~s~-~~~~R 95 (220)
T PF10505_consen 17 KLWSLGDKDSDLLLLVRCSVDGVEDSKSDRKLGCQFPVSVLPKLEYQPEYGAEILTKSELCKLWTESKLRPNSS-LLRAR 95 (220)
T ss_pred EEEEcCCCCcceEEEEEeccceeeecccCCCccceeeEEeeeccccccccchhhcCHHHHHHHHHHHhhCCCCe-eEEEE
Confidence 489999 99999999999885 11 12234443 322 1 24567778999999988776544 44888
Q ss_pred ecceeeeeeeecccccc--cccCCCCCCCCCcChhhHHhhHHHHHHHHhhhccCCCceEEEEeeCCCCcEEeecc
Q 000608 375 ENGVVQGYELLKTDDIF--LLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQDPGAYWLYKSAGEDVIRLFDL 447 (1395)
Q Consensus 375 ~nGIVQ~YELiKTeDIP--~Leg~s~~gas~FdPqVV~~~AqnILsFLKsNCTKdGhTYWLfK~~geDvVkLYDL 447 (1395)
.|-. .-+++--|-+. .+.. ....|.|.-..++-.+|..||+.--.=.+|.|.|-...++.-|-+|=-
T Consensus 96 I~~~--t~~vl~~Ek~~~~~l~~----~~~~~~p~~~~~~L~~L~~~Lk~L~~L~pG~YLLrh~~~d~f~~i~k~ 164 (220)
T PF10505_consen 96 INAW--TSEVLSIEKLSMESLEE----ELCRFYPIKSLNILSHLHEFLKKLSSLQPGSYLLRHTPGDSFVLIYKS 164 (220)
T ss_pred Eccc--cCceeEEEecCHHHHHH----HhhhcCCCcHHHHHHHHHHHHHHHcCCCCCcEEEEecCCCCcEEEEEc
Confidence 8755 33344333332 2211 125788888889999998999998888899999999988887766543
No 18
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=58.11 E-value=1.9 Score=37.76 Aligned_cols=48 Identities=17% Similarity=0.222 Sum_probs=36.8
Q ss_pred ccccccchhhhhhhhccchhhHHHHHHHHHHHHhcc-CccEEEEEecCc
Q 000608 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINCNLG 1130 (1395)
Q Consensus 1083 gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d-~~niilincnlg 1130 (1395)
+.+.+.+|....+.++.++|..-|..|++.++.+.+ |..++.+..|||
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 53 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLG 53 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence 456789999999999999999999999999777763 334555555554
No 19
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=57.30 E-value=23 Score=34.42 Aligned_cols=49 Identities=22% Similarity=0.308 Sum_probs=31.9
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+...|+..|++|.... |... .+.+.+|......+++.+|+..|..++..
T Consensus 80 ~~~~A~~~~~~al~~~---~~~~-----------~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 128 (234)
T TIGR02521 80 ELEKAEDSFRRALTLN---PNNG-----------DVLNNYGTFLCQQGKYEQAMQQFEQAIED 128 (234)
T ss_pred CHHHHHHHHHHHHhhC---CCCH-----------HHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 3456777777666543 4322 23445566667778889999999988864
No 20
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=56.62 E-value=14 Score=27.55 Aligned_cols=30 Identities=33% Similarity=0.460 Sum_probs=25.6
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHHhhhh
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELACSVY 776 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~velac~vy 776 (1395)
+.|..||.+|.+.|++.+|++..+-|...+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 568899999999999999999999887664
No 21
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=52.58 E-value=10 Score=38.38 Aligned_cols=51 Identities=25% Similarity=0.359 Sum_probs=37.3
Q ss_pred hhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
.-.|+.||++|.+.- |..- ..+|++.-+|......++.++|..+|..||..
T Consensus 51 ~~~A~~~~~~al~~~---~~~~--------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 101 (172)
T PRK02603 51 YAEALENYEEALKLE---EDPN--------DRSYILYNMGIIYASNGEHDKALEYYHQALEL 101 (172)
T ss_pred HHHHHHHHHHHHHHh---hccc--------hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 347888998887654 2211 13567788888888888999999999988875
No 22
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=49.85 E-value=19 Score=27.10 Aligned_cols=29 Identities=34% Similarity=0.575 Sum_probs=25.6
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHHhhh
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELACSV 775 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~velac~v 775 (1395)
++|..||++|..-|++.+|++..+.+..+
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 57889999999999999999999888754
No 23
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=49.41 E-value=36 Score=42.87 Aligned_cols=28 Identities=29% Similarity=0.342 Sum_probs=21.6
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHHHhhh
Q 000608 748 SYLALGQAYKEDGQLHQALKTVELACSV 775 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~velac~v 775 (1395)
.|.+||.+|...|++.+|++..+-+...
T Consensus 51 ~~~~lA~~~~~~g~~~~A~~~~~~al~~ 78 (765)
T PRK10049 51 GYAAVAVAYRNLKQWQNSLTLWQKALSL 78 (765)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4677888888888888888887776655
No 24
>PRK04841 transcriptional regulator MalT; Provisional
Probab=48.57 E-value=1.3e+02 Score=37.68 Aligned_cols=84 Identities=14% Similarity=0.058 Sum_probs=56.7
Q ss_pred hhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCc
Q 000608 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlg 1130 (1395)
+..|...+++|...+ |.... --.+++.+-+|......+++..|+..|..|+..+++..+....+...++||
T Consensus 468 ~~~A~~~~~~al~~~---~~~~~------~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la 538 (903)
T PRK04841 468 PEEAERLAELALAEL---PLTWY------YSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQS 538 (903)
T ss_pred HHHHHHHHHHHHhcC---CCccH------HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHH
Confidence 456777777776543 44321 124456677899999999999999999999999998877655544555544
Q ss_pred h-----hhHHHHHHHHHH
Q 000608 1131 H-----GRRALAEEMVSK 1143 (1395)
Q Consensus 1131 h-----grralaee~~s~ 1143 (1395)
. |+-.-|++...+
T Consensus 539 ~~~~~~G~~~~A~~~~~~ 556 (903)
T PRK04841 539 EILFAQGFLQAAYETQEK 556 (903)
T ss_pred HHHHHCCCHHHHHHHHHH
Confidence 3 444455554444
No 25
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=47.80 E-value=30 Score=37.28 Aligned_cols=119 Identities=14% Similarity=0.060 Sum_probs=74.5
Q ss_pred hccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCchhhHHHHHHHHHHHhhh-hhhhhhHHHHHHH
Q 000608 1082 KGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESL-KIHTIFQNMYKQA 1160 (1395)
Q Consensus 1082 ~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlghgrralaee~~s~~~~~-~~h~~~~~~y~~~ 1160 (1395)
--.++-.+|+.....++..+|+..|..|++.+-.-.+--+ -|+..-+..|+.+-|.+.+.++..- ...+-+..+|-.+
T Consensus 145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~-~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~ 223 (280)
T PF13429_consen 145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARN-ALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAA 223 (280)
T ss_dssp -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHH-HHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHH-HHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence 3477888999999999999999999999887654333211 1344556778888788888777665 3444444555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhh
Q 000608 1161 LETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGML 1214 (1395)
Q Consensus 1161 l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgml 1214 (1395)
...- -.|.+||.||..+.+. ...| -.+...||..+...|+-
T Consensus 224 ~~~l-g~~~~Al~~~~~~~~~-----~p~d-------~~~~~~~a~~l~~~g~~ 264 (280)
T PF13429_consen 224 YLQL-GRYEEALEYLEKALKL-----NPDD-------PLWLLAYADALEQAGRK 264 (280)
T ss_dssp HHHH-T-HHHHHHHHHHHHHH-----STT--------HHHHHHHHHHHT-----
T ss_pred hccc-cccccccccccccccc-----cccc-------ccccccccccccccccc
Confidence 4433 4799999999875431 1112 24677888888888863
No 26
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=47.67 E-value=13 Score=29.67 Aligned_cols=27 Identities=7% Similarity=0.225 Sum_probs=18.0
Q ss_pred cccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1086 CNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1086 ~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+..+|...+..+++.+|...|..+++.
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~ 29 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALEL 29 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 445666667777777777777766654
No 27
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=47.49 E-value=1.3e+02 Score=39.95 Aligned_cols=138 Identities=23% Similarity=0.219 Sum_probs=83.9
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecC
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNL 1129 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnl 1129 (1395)
-.--||.||.++.+-= | |.-|+-|-+|-.=-+++++..|-+-|+.-+.|-.+.+| +.-||
T Consensus 627 ~~~KAlq~y~kvL~~d---p-----------kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~d------v~lNl 686 (1018)
T KOG2002|consen 627 HQEKALQLYGKVLRND---P-----------KNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFED------VWLNL 686 (1018)
T ss_pred HHHHHHHHHHHHHhcC---c-----------chhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCc------eeeeH
Confidence 3445777776554432 4 44699999999999999999998888887777664444 33477
Q ss_pred ch-----hhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhh--HHHH
Q 000608 1130 GH-----GRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRM--EVHT 1202 (1395)
Q Consensus 1130 gh-----grralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~--ev~t 1202 (1395)
|| |+-.+|-+|-+... +++. .++.+.=-.-.|+--|.... |..||.-|--+...+-.-+..+.| .|.-
T Consensus 687 ah~~~e~~qy~~AIqmYe~~l--kkf~-~~~~~~vl~~Lara~y~~~~--~~eak~~ll~a~~~~p~~~~v~FN~a~v~k 761 (1018)
T KOG2002|consen 687 AHCYVEQGQYRLAIQMYENCL--KKFY-KKNRSEVLHYLARAWYEAGK--LQEAKEALLKARHLAPSNTSVKFNLALVLK 761 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHHH--HHhc-ccCCHHHHHHHHHHHHHhhh--HHHHHHHHHHHHHhCCccchHHhHHHHHHH
Confidence 87 66667767666542 1222 23343333344555554443 666666665555555444444433 5666
Q ss_pred HHHHHHHHHh
Q 000608 1203 QFAHTYLRLG 1212 (1395)
Q Consensus 1203 q~ahtylrlg 1212 (1395)
|+|-+-||+-
T Consensus 762 kla~s~lr~~ 771 (1018)
T KOG2002|consen 762 KLAESILRLE 771 (1018)
T ss_pred HHHHHHHhcc
Confidence 6666666653
No 28
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=45.80 E-value=22 Score=29.10 Aligned_cols=30 Identities=30% Similarity=0.423 Sum_probs=26.3
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHHhhhh
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELACSVY 776 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~velac~vy 776 (1395)
+.++.||++|.+-||+.+|.++.+-+....
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~ 31 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALD 31 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 468899999999999999999998887654
No 29
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=42.45 E-value=23 Score=35.88 Aligned_cols=63 Identities=22% Similarity=0.308 Sum_probs=47.4
Q ss_pred hhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhc--cCcc
Q 000608 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVS--DYTN 1121 (1395)
Q Consensus 1052 ~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~--d~~n 1121 (1395)
..|+.+|++|.... |... ..+..+|++...+|+...+.+++.+|+..|..|+..|++.. |+.|
T Consensus 89 ~~A~~~~~~al~~~---p~~~----~~~~~lg~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~ 153 (172)
T PRK02603 89 DKALEYYHQALELN---PKQP----SALNNIAVIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN 153 (172)
T ss_pred HHHHHHHHHHHHhC---cccH----HHHHHHHHHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence 45677777666543 5442 33456699999999999999999999999999999888776 4444
No 30
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=41.32 E-value=28 Score=43.54 Aligned_cols=89 Identities=27% Similarity=0.355 Sum_probs=0.0
Q ss_pred ccccchhhhhhhhccchhhHHHHHHHHHHHHhccCcc-EEEEEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHH
Q 000608 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN-IILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALET 1163 (1395)
Q Consensus 1085 v~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~n-iilincnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~~ 1163 (1395)
|-||+|..-..-+++.+|..-|.+|..-.+++..-.= -+=++-||||-+|-|
T Consensus 416 v~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl--------------------------- 468 (611)
T KOG1173|consen 416 VLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKL--------------------------- 468 (611)
T ss_pred hhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHH---------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhh
Q 000608 1164 AKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGML 1214 (1395)
Q Consensus 1164 ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgml 1214 (1395)
..|-+||-||..| -..+.---++|+-+|-+|+-||-|
T Consensus 469 --~~~~eAI~~~q~a------------L~l~~k~~~~~asig~iy~llgnl 505 (611)
T KOG1173|consen 469 --NKYEEAIDYYQKA------------LLLSPKDASTHASIGYIYHLLGNL 505 (611)
T ss_pred --hhHHHHHHHHHHH------------HHcCCCchhHHHHHHHHHHHhcCh
No 31
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=40.85 E-value=35 Score=29.15 Aligned_cols=49 Identities=16% Similarity=0.340 Sum_probs=37.7
Q ss_pred hhhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhh-ccchhhHHHHHHHH
Q 000608 1049 NNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERK-EMEKGEHAFANAIN 1111 (1395)
Q Consensus 1049 ~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~-~l~~ae~af~~ai~ 1111 (1395)
.+...|+.||++|.+.- |.... ++..+|....+.+ +..+|...|..||.
T Consensus 17 ~~~~~A~~~~~~ai~~~---p~~~~-----------~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 17 GDYEEAIEYFEKAIELD---PNNAE-----------AYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp THHHHHHHHHHHHHHHS---TTHHH-----------HHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC---CCCHH-----------HHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46678999999988864 55433 6777888888887 68888888888875
No 32
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=39.45 E-value=40 Score=44.30 Aligned_cols=93 Identities=19% Similarity=0.247 Sum_probs=52.2
Q ss_pred hhhhhhHHHHHHHHhcCCCchh--HHHHHHHH-hhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEe
Q 000608 1051 LSSALSCYEEAVKALGGLPTVS--AELQSVLK-KKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINC 1127 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~--~e~~sv~k-k~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilinc 1127 (1395)
.-.|+.+|++|.+.- |... ...++.++ ...|+...+|...++.+++++|+..|..||...-.-.+ ..+.|-.+
T Consensus 319 ~~eA~~~l~~Al~~~---p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~-a~~~Lg~~ 394 (1157)
T PRK11447 319 RARAVAQFEKALALD---PHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSY-AVLGLGDV 394 (1157)
T ss_pred HHHHHHHHHHHHHhC---CCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHH
Confidence 446888888877654 4322 22333333 24677777788888888888888888888875321110 00111122
Q ss_pred cCchhhHHHHHHHHHHHhhh
Q 000608 1128 NLGHGRRALAEEMVSKVESL 1147 (1395)
Q Consensus 1128 nlghgrralaee~~s~~~~~ 1147 (1395)
-+.-|+-.-|++...++-..
T Consensus 395 ~~~~g~~~eA~~~y~~aL~~ 414 (1157)
T PRK11447 395 AMARKDYAAAERYYQQALRM 414 (1157)
T ss_pred HHHCCCHHHHHHHHHHHHHh
Confidence 23345555566666555443
No 33
>PRK04841 transcriptional regulator MalT; Provisional
Probab=39.35 E-value=1.3e+02 Score=37.79 Aligned_cols=60 Identities=10% Similarity=0.159 Sum_probs=38.5
Q ss_pred cccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEE-----ecCchhhHHHHHHHHHHHhh
Q 000608 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILIN-----CNLGHGRRALAEEMVSKVES 1146 (1395)
Q Consensus 1086 ~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilin-----cnlghgrralaee~~s~~~~ 1146 (1395)
..-+|+..++.+++..|+..+..|+..++...+.. .+... ..+.+|+.+-|.+...+...
T Consensus 576 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~-~~~~~~~la~~~~~~G~~~~A~~~l~~a~~ 640 (903)
T PRK04841 576 LRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQ-QLQCLAMLAKISLARGDLDNARRYLNRLEN 640 (903)
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchH-HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34478889999999999999999998877544321 11112 22345565666655555543
No 34
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=38.80 E-value=24 Score=29.92 Aligned_cols=49 Identities=18% Similarity=0.327 Sum_probs=35.9
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
|.-.|+.+|+++.+.- |. ..++...+|+..+..++..+|...|..+|..
T Consensus 12 ~~~~A~~~~~~~l~~~---P~-----------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 12 DYDEAIAAFEQALKQD---PD-----------NPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHHHHHHHCCS---TT-----------HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC---CC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777777766554 43 4567778899999999999999999888864
No 35
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=38.35 E-value=42 Score=33.75 Aligned_cols=26 Identities=12% Similarity=0.097 Sum_probs=14.7
Q ss_pred ccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1087 NEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1087 nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+-+|......++.++|+..|..|+..
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l 64 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRL 64 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555555566666666666554
No 36
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=36.76 E-value=5.6e+02 Score=28.59 Aligned_cols=53 Identities=23% Similarity=0.462 Sum_probs=34.0
Q ss_pred CceeeeccCCCCCccchhhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1033 GGIFKYLEDPVVGDAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1033 ggifkyl~~p~~~d~e~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+|+|++|+.+. . +.-.|..+|++|-..+ -..+++++|-.||..|...
T Consensus 18 ~~~~~~f~~~~-~----~~e~Aa~~y~~Aa~~f----------------------------k~~~~~~~A~~ay~kAa~~ 64 (282)
T PF14938_consen 18 SGFFSFFGSKK-P----DYEEAADLYEKAANCF----------------------------KLAKDWEKAAEAYEKAADC 64 (282)
T ss_dssp -TCCCHH--SC-H----HHHHHHHHHHHHHHHH----------------------------HHTT-CHHHHHHHHHHHHH
T ss_pred cchhhhcCCCC-C----CHHHHHHHHHHHHHHH----------------------------HHHhccchhHHHHHHHHHH
Confidence 57888874432 2 3446888888887665 1246778888888888888
Q ss_pred HHHhcc
Q 000608 1113 FKEVSD 1118 (1395)
Q Consensus 1113 f~ev~d 1118 (1395)
+....|
T Consensus 65 ~~~~~~ 70 (282)
T PF14938_consen 65 YEKLGD 70 (282)
T ss_dssp HHHTT-
T ss_pred HHHcCC
Confidence 877544
No 37
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=33.87 E-value=6.4e+02 Score=27.71 Aligned_cols=100 Identities=21% Similarity=0.264 Sum_probs=59.1
Q ss_pred hhHHHHHHHHHHHHHhhhhhcccchhhhccccccccccccccccccccccccccchhHHHHHHHHHHHHhhhhhhhhHHh
Q 000608 1197 RMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWEDISVPCEGRTRKELRKHEVSANDAIREALSLYESMGDLRKQEAAY 1276 (1395)
Q Consensus 1197 ~~ev~tq~ahtylrlgmllare~~~~~~ye~g~~~~~~~~~~~~~~~~~~~~eisa~daireal~~yeslge~rkqeaa~ 1276 (1395)
..+--.+.|..|+++|..+..- + .. +......+++..|...=++..+=.-
T Consensus 244 ~~~~~~~~a~~~l~~a~w~~~~---------------------------~-~~-~~~~~~~~~~~~~~~a~~~~~~~~k- 293 (352)
T PF02259_consen 244 DKESKELKAKAFLLLAKWLDEL---------------------------Y-SK-LSSESSDEILKYYKEATKLDPSWEK- 293 (352)
T ss_pred hhhhHHHHHHHHHHHHHHHHhh---------------------------c-cc-cccccHHHHHHHHHHHHHhChhHHH-
Confidence 4555677899999999887654 1 11 2333445555555555444443332
Q ss_pred HHHHHHhhccchhhHhhhccccccCCCCCCchHHHHHHHhhhHHHHhHHhhhcccCCCCC
Q 000608 1277 AYFQLACYQRDCFLKFLESDHKKNNLPKGENSFVHRVRQYASLAERNWQKAMDFYGPRSH 1336 (1395)
Q Consensus 1277 a~fqlacyqrd~cl~fl~~~~~~~~~~k~e~~~~q~~k~yaslaernwqka~~fygp~th 1336 (1395)
+|+++|-+. -+.++.+...... . .. .....|+-.|=++.-+|+- |||+.+
T Consensus 294 ~~~~~a~~~----~~~~~~~~~~~~~-~--~~--~~~~~~~~~ai~~y~~al~-~~~~~~ 343 (352)
T PF02259_consen 294 AWHSWALFN----DKLLESDPREKEE-S--SQ--EDRSEYLEQAIEGYLKALS-LGSKYV 343 (352)
T ss_pred HHHHHHHHH----HHHHHhhhhcccc-c--ch--hHHHHHHHHHHHHHHHHHh-hCCCch
Confidence 788888654 3445554211111 1 11 4667899999999999997 466643
No 38
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=33.18 E-value=1e+02 Score=31.31 Aligned_cols=95 Identities=21% Similarity=0.332 Sum_probs=52.1
Q ss_pred hhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhccCcc------EEEE
Q 000608 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTN------IILI 1125 (1395)
Q Consensus 1052 ~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~n------iili 1125 (1395)
..|+..|++|... +|+. . .....+-. +|..+-.-+.+++|...|.+++..|-+ |..| .-++
T Consensus 18 ~~Ai~~Y~~Al~~--gL~~-~-~~~~a~i~-------lastlr~LG~~deA~~~L~~~~~~~p~--~~~~~~l~~f~Al~ 84 (120)
T PF12688_consen 18 EEAIPLYRRALAA--GLSG-A-DRRRALIQ-------LASTLRNLGRYDEALALLEEALEEFPD--DELNAALRVFLALA 84 (120)
T ss_pred HHHHHHHHHHHHc--CCCc-h-HHHHHHHH-------HHHHHHHcCCHHHHHHHHHHHHHHCCC--ccccHHHHHHHHHH
Confidence 3688999988663 3332 1 22223333 555555556677888888777765421 1110 0123
Q ss_pred EecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000608 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRA 1177 (1395)
Q Consensus 1126 ncnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~a 1177 (1395)
-=|+|+.+.|+..-+..-. .--..|.+||++|..
T Consensus 85 L~~~gr~~eAl~~~l~~la------------------~~~~~y~ra~~~ya~ 118 (120)
T PF12688_consen 85 LYNLGRPKEALEWLLEALA------------------ETLPRYRRAIRFYAD 118 (120)
T ss_pred HHHCCCHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHh
Confidence 3466777766654332221 111289999999964
No 39
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=32.98 E-value=28 Score=26.71 Aligned_cols=31 Identities=10% Similarity=0.139 Sum_probs=24.8
Q ss_pred cccchhhhhhhhccchhhHHHHHHHHHHHHh
Q 000608 1086 CNEMGRIRLERKEMEKGEHAFANAINAFKEV 1116 (1395)
Q Consensus 1086 ~nelgr~rle~~~l~~ae~af~~ai~af~ev 1116 (1395)
+|.||......++.++|+..|..|+...+++
T Consensus 5 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 35 (42)
T PF13374_consen 5 LNNLANAYRAQGRYEEALELLEEALEIRERL 35 (42)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHHHHH---
T ss_pred HHHHHHHHHhhhhcchhhHHHHHHHHHHHHH
Confidence 5778888899999999999999999999988
No 40
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=32.37 E-value=2.1e+02 Score=35.88 Aligned_cols=59 Identities=12% Similarity=-0.003 Sum_probs=32.9
Q ss_pred ccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEEEEecCchhhHHHHHHHHHHH
Q 000608 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKV 1144 (1395)
Q Consensus 1085 v~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlghgrralaee~~s~~ 1144 (1395)
+...+|...+..+++.+|..+|..|+...-.-.. ....+.++-+..|+..-|.+...++
T Consensus 112 a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~-a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 112 DVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQ-IFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHH-HHHHHHHHHHHCCChHHHHHHHHHH
Confidence 3456677777778888887777777764211000 1112334445556666666655544
No 41
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=32.14 E-value=44 Score=24.62 Aligned_cols=26 Identities=15% Similarity=0.323 Sum_probs=21.7
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHH
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELA 772 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~vela 772 (1395)
|+++.+|.+|.+-|+..+|+++.+-.
T Consensus 1 ~a~~~~a~~~~~~g~~~~A~~~~~~~ 26 (33)
T PF13174_consen 1 DALYRLARCYYKLGDYDEAIEYFQRL 26 (33)
T ss_dssp HHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 56888999999999999999887643
No 42
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=31.62 E-value=1.8e+02 Score=36.35 Aligned_cols=37 Identities=16% Similarity=0.259 Sum_probs=27.4
Q ss_pred CCCCchHHHHHHHhhhHHHHhHHhhhcccCCCCCCchh
Q 000608 1303 PKGENSFVHRVRQYASLAERNWQKAMDFYGPRSHPTMY 1340 (1395)
Q Consensus 1303 ~k~e~~~~q~~k~yaslaernwqka~~fygp~thp~m~ 1340 (1395)
-+..+.|..|||| +-|++.---+=+||-|-...-.|.
T Consensus 423 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 459 (656)
T PRK15174 423 GIERDEWERRAKW-GYLADNFLLDWLECRGEQADEPMY 459 (656)
T ss_pred cCChHHHHHHHHh-hHHHHHHHHHHHHhcccchhhHHH
Confidence 3456788888886 789998888888888876554454
No 43
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=30.14 E-value=37 Score=34.14 Aligned_cols=64 Identities=23% Similarity=0.327 Sum_probs=47.1
Q ss_pred hhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHh--ccCccE
Q 000608 1052 SSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV--SDYTNI 1122 (1395)
Q Consensus 1052 ~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev--~d~~ni 1122 (1395)
..|+.+|+.|..- -|.. -..+...|.|...+||..++.+++..|...|.+|+..|+++ -|+.|.
T Consensus 89 ~eA~~~~~~Al~~---~~~~----~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~ 154 (168)
T CHL00033 89 TKALEYYFQALER---NPFL----PQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY 154 (168)
T ss_pred HHHHHHHHHHHHh---CcCc----HHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence 3466666655543 2332 23456779999999999999999999999999999999887 565554
No 44
>KOG2479 consensus Translation initiation factor 3, subunit d (eIF-3d) [Translation, ribosomal structure and biogenesis]
Probab=30.05 E-value=1.6e+02 Score=36.49 Aligned_cols=85 Identities=21% Similarity=0.481 Sum_probs=54.5
Q ss_pred HH-HHhhhcCCCcEEEEEeecceeeeeeeecccccccccCCCCCCCCCcChhhH-------HhhHHHHHHHHhhhccCC-
Q 000608 357 AW-LDNVMASVPELAICYHENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVV-------QQSGLSVLRFLQENCKQD- 427 (1395)
Q Consensus 357 yW-LDNlM~NVPElamCyH~nGIVQ~YELiKTeDIP~Leg~s~~gas~FdPqVV-------~~~AqnILsFLKsNCTKd- 427 (1395)
-| +.+|+|++-.+-+ |+|.++....+.---.| |+..|.|+-. -+||=-||+=+-+-|-|-
T Consensus 435 kWT~qAlLAgsD~mKl-----GyVSR~n~Rd~~~HvIL------gtq~~KP~efAsqinLnmdN~WGIlRciiDlcMK~~ 503 (549)
T KOG2479|consen 435 KWTVQALLAGSDQMKL-----GYVSRVNPRDHQNHVIL------GTQQYKPKEFASQINLNMDNAWGILRCIIDLCMKQP 503 (549)
T ss_pred HHHHHHHHcCCcceee-----eeeeccCcccccceeEE------EeeccChHHHHhhhcccccchhhhHHHHHHHHhcCC
Confidence 45 6889999887765 55544433222210000 0112333211 256667999999999765
Q ss_pred CceEEEEeeCCCCcEEeeccccCCC
Q 000608 428 PGAYWLYKSAGEDVIRLFDLSVIPK 452 (1395)
Q Consensus 428 GhTYWLfK~~geDvVkLYDLTtL~e 452 (1395)
.|.|.|.|+.+.-+|+||++..=-+
T Consensus 504 dGKYll~KDPnkpiiRlYsvP~~tF 528 (549)
T KOG2479|consen 504 DGKYLLVKDPNKPIIRLYSVPPNTF 528 (549)
T ss_pred CCcEEEEeCCCCceEEEeeCCCCcc
Confidence 8999999999999999999876333
No 45
>smart00012 PTPc_DSPc Protein tyrosine phosphatase, catalytic domain, undefined specificity. Protein tyrosine phosphatases. Homologues detected by this profile and not by those of "PTPc" or "DSPc" are predicted to be protein phosphatases with a similar fold to DSPs and PTPs, yet with unpredicted specificities.
Probab=28.76 E-value=2.4e+02 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhc---cCccEEEEEecCchhhHHH
Q 000608 1104 HAFANAINAFKEVS---DYTNIILINCNLGHGRRAL 1136 (1395)
Q Consensus 1104 ~af~~ai~af~ev~---d~~niilincnlghgrral 1136 (1395)
.+|.+.|++.+... .-.+-|+|-|..|.||-+.
T Consensus 20 ~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00012 20 DSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhH
Confidence 34444444443332 2245788999999999885
No 46
>smart00404 PTPc_motif Protein tyrosine phosphatase, catalytic domain motif.
Probab=28.76 E-value=2.4e+02 Score=25.33 Aligned_cols=33 Identities=18% Similarity=0.393 Sum_probs=20.9
Q ss_pred HHHHHHHHHHHHhc---cCccEEEEEecCchhhHHH
Q 000608 1104 HAFANAINAFKEVS---DYTNIILINCNLGHGRRAL 1136 (1395)
Q Consensus 1104 ~af~~ai~af~ev~---d~~niilincnlghgrral 1136 (1395)
.+|.+.|++.+... .-.+-|+|-|..|.||-+.
T Consensus 20 ~~~~~~~~~v~~~~~~~~~~~pvlVHC~~G~gRtg~ 55 (105)
T smart00404 20 DSILEFLRAVKKNLNQSSSSGPVVVHCSAGVGRTGT 55 (105)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCEEEEeCCCCChhhH
Confidence 34444444443332 2245788999999999885
No 47
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=27.87 E-value=62 Score=25.71 Aligned_cols=24 Identities=25% Similarity=0.515 Sum_probs=20.3
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHH
Q 000608 748 SYLALGQAYKEDGQLHQALKTVEL 771 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~vel 771 (1395)
+|..||.+|..-|++++|+..-|-
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHH
Confidence 578999999999999999988765
No 48
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=27.69 E-value=29 Score=27.72 Aligned_cols=22 Identities=27% Similarity=0.540 Sum_probs=18.9
Q ss_pred hhhhhhhhHhhhcchHHHHHHH
Q 000608 746 GESYLALGQAYKEDGQLHQALK 767 (1395)
Q Consensus 746 gesylalg~ayked~ql~qalk 767 (1395)
.++|..||.+|.+-|++.+|.+
T Consensus 13 ~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 13 AEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred HHHHHHHHHHHHHCcCHHhhcC
Confidence 3688999999999999998863
No 49
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=27.38 E-value=72 Score=21.05 Aligned_cols=26 Identities=38% Similarity=0.502 Sum_probs=20.2
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHH
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELA 772 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~vela 772 (1395)
..|..+|.+|.+-|++.+|.+..+-+
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45778888888888898888876644
No 50
>cd09241 BRO1_ScRim20-like Protein-interacting, N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 and related proteins. This family contains the N-terminal, Bro1-like domain of Saccharomyces cerevisiae Rim20 (also known as PalA) and related proteins. It belongs to the BRO1_Alix_like superfamily which also includes the Bro1-like domains of mammalian Alix (apoptosis-linked gene-2 interacting protein X), His-Domain type N23 protein tyrosine phosphatase (HD-PTP, also known as PTPN23), RhoA-binding proteins Rhophilin-1 and -2, Brox, Saccharomyces cerevisiae Bro1, Ustilago maydis Rim23 (also known as PalC), and related domains. Alix, HD-PTP, Brox, Bro1, Rim20, and Rim23, interact with the ESCRT (Endosomal Sorting Complexes Required for Transport) system. Rim20 and Rim23 participate in the response to the external pH via the Rim101 pathway. Bro1-like domains are boomerang-shaped, and part of the domain is a tetratricopeptide repeat (TPR)-like structure. Bro1-like domains bind comp
Probab=26.96 E-value=5.2e+02 Score=30.32 Aligned_cols=134 Identities=18% Similarity=0.192 Sum_probs=0.0
Q ss_pred ceeeeccCC------CCCccchhhhhhhh--HHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHH
Q 000608 1034 GIFKYLEDP------VVGDAENNLSSALS--CYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHA 1105 (1395)
Q Consensus 1034 gifkyl~~p------~~~d~e~nl~~al~--cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~a 1105 (1395)
|||.||.+- ...|...+...++. |-.+|+..+ ++..+.++- ..-|-.|--..+-..
T Consensus 143 G~F~~l~~~~~~~~~~s~Dl~~~~l~~L~~lmLAQAQE~~---------~~Kai~~~~-------k~sliAKLa~qv~~~ 206 (355)
T cd09241 143 GCFEYILQHLLPTLSPPPDLDENTLKALESLMLAQAQECF---------WQKAISDGT-------KDSLIAKLAAQVSDY 206 (355)
T ss_pred HHHHHHHHhcccccCCCCCCCHHHHHHHHHHHHHHHHHHH---------HHHHHhcCC-------cchHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHhccCccEEEEEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhH
Q 000608 1106 FANAINAFKEVSDYTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKL-EYCESLRYYRAAKLQLNS 1184 (1395)
Q Consensus 1106 f~~ai~af~ev~d~~niilincnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~-ey~~sl~yy~aak~~l~~ 1184 (1395)
|.+|.++++ +-..-+.....-+--|..-|+--+ .|.+++..-.. +|=+++.++..|...++.
T Consensus 207 Y~~a~~~l~-------------~~~~i~~~W~~~v~~K~~~f~A~A----~y~~a~~~~e~~k~Ge~Ia~L~~A~~~l~~ 269 (355)
T cd09241 207 YQEALKYAN-------------KSDLIRSDWINHLKVKKHHFKAAA----HYRMALVALEKSKYGEEVARLRVALAACKE 269 (355)
T ss_pred HHHHHHHHh-------------cCCcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Q ss_pred HHhhhccchhhhhhHH
Q 000608 1185 LVEEAGSVSNSLRMEV 1200 (1395)
Q Consensus 1185 ~~~~~~~~~~~l~~ev 1200 (1395)
+......+...++.++
T Consensus 270 a~~~~~~~~~~~~~~~ 285 (355)
T cd09241 270 ALKEARYGNKAVLEDL 285 (355)
T ss_pred HHHHhhccchhHHHHH
No 51
>cd00127 DSPc Dual specificity phosphatases (DSP); Ser/Thr and Tyr protein phosphatases. Structurally similar to tyrosine-specific phosphatases but with a shallower active site cleft and a distinctive active site signature motif, HCxxGxxR. Characterized as VHR- or Cdc25-like.
Probab=26.41 E-value=1.9e+02 Score=27.82 Aligned_cols=17 Identities=29% Similarity=0.520 Sum_probs=14.6
Q ss_pred ccEEEEEecCchhhHHH
Q 000608 1120 TNIILINCNLGHGRRAL 1136 (1395)
Q Consensus 1120 ~niilincnlghgrral 1136 (1395)
..-|||.|.-|+||-..
T Consensus 81 ~~~vlVHC~~G~~Rs~~ 97 (139)
T cd00127 81 GGKVLVHCLAGVSRSAT 97 (139)
T ss_pred CCcEEEECCCCCchhHH
Confidence 45799999999999873
No 52
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=26.32 E-value=39 Score=25.63 Aligned_cols=28 Identities=11% Similarity=0.239 Sum_probs=23.4
Q ss_pred ccccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1085 VCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1085 v~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+|..+|...+..+++.+|...|..||.-
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 5677899999999999999999999863
No 53
>PRK12370 invasion protein regulator; Provisional
Probab=25.08 E-value=61 Score=39.25 Aligned_cols=85 Identities=14% Similarity=-0.054 Sum_probs=50.8
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHHHhcc-CccEEEEEec
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINCN 1128 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d-~~niilincn 1128 (1395)
.+..|+.+|++|...= |.. .++...+|...+..++.++|+.+|..|+...-.-.+ |.+.-. +-
T Consensus 319 ~~~~A~~~~~~Al~ld---P~~-----------~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~--~l 382 (553)
T PRK12370 319 AMIKAKEHAIKATELD---HNN-----------PQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGW--NL 382 (553)
T ss_pred HHHHHHHHHHHHHhcC---CCC-----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HH
Confidence 4566776666554432 442 344456678888888999999999999876432222 222211 22
Q ss_pred CchhhHHHHHHHHHHHhhhhhh
Q 000608 1129 LGHGRRALAEEMVSKVESLKIH 1150 (1395)
Q Consensus 1129 lghgrralaee~~s~~~~~~~h 1150 (1395)
+--||-.-|.+...+.-.+.-+
T Consensus 383 ~~~G~~~eAi~~~~~Al~l~P~ 404 (553)
T PRK12370 383 FMAGQLEEALQTINECLKLDPT 404 (553)
T ss_pred HHCCCHHHHHHHHHHHHhcCCC
Confidence 2235666677777777666544
No 54
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=24.71 E-value=4.7e+02 Score=35.98 Aligned_cols=250 Identities=24% Similarity=0.287 Sum_probs=128.8
Q ss_pred hhhhhHHHHHHHHhcCC-CchhHHHHHHHHhhccccccc-----------------hhhhhhhhccchhhHHHH------
Q 000608 1052 SSALSCYEEAVKALGGL-PTVSAELQSVLKKKGWVCNEM-----------------GRIRLERKEMEKGEHAFA------ 1107 (1395)
Q Consensus 1052 ~~al~cy~~a~~al~~l-p~~~~e~~sv~kk~gwv~nel-----------------gr~rle~~~l~~ae~af~------ 1107 (1395)
-.=|.=|+.|.+-|+.. ++...|....++|.|-...-| +-.=.+..-.++|-.+|+
T Consensus 890 D~~L~ry~~AL~hLs~~~~~~~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkle 969 (1265)
T KOG1920|consen 890 DDYLKRYEDALSHLSECGETYFPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLE 969 (1265)
T ss_pred HHHHHHHHHHHHHHHHcCccccHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHH
Confidence 34455567776666554 346778888888887543222 222223445667777774
Q ss_pred HHHHHHHHhccCccEEEEEecCchhh---HHHHHHHHHHHhhhhhhhhhHHHHHHHH------HHHHHHHHHHHH-----
Q 000608 1108 NAINAFKEVSDYTNIILINCNLGHGR---RALAEEMVSKVESLKIHTIFQNMYKQAL------ETAKLEYCESLR----- 1173 (1395)
Q Consensus 1108 ~ai~af~ev~d~~niilincnlghgr---ralaee~~s~~~~~~~h~~~~~~y~~~l------~~ak~ey~~sl~----- 1173 (1395)
+|+.||++-.|.--+.-|---|--|+ ++|||+|++++-+-.+|- .|++-.+ +.|=.+|++|-+
T Consensus 970 kAl~a~~~~~dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~---eAa~il~e~~sd~~~av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen 970 KALKAYKECGDWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHY---EAAKILLEYLSDPEEAVALLCKAKEWEEAL 1046 (1265)
T ss_pred HHHHHHHHhccHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccch---hHHHHHHHHhcCHHHHHHHHhhHhHHHHHH
Confidence 68888888777655444433222233 356799999998877775 3333322 344455555544
Q ss_pred -HHHHHHH------HHhHHHhhhccchhhhhhHHHHHHHHHHHHHhhhhhcccchhhhccccccc---c------ccccc
Q 000608 1174 -YYRAAKL------QLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLLAREDTTAEVYETGAWE---D------ISVPC 1237 (1395)
Q Consensus 1174 -yy~aak~------~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmllare~~~~~~ye~g~~~---~------~~~~~ 1237 (1395)
--..+++ -|.-+..|+-..-..+-+.+-+||-.---||--+=.+--...++|-.|-++ + ++..+
T Consensus 1047 rva~~~~~~d~iee~l~~al~e~~~~~~~~L~~~k~~f~~yk~RLl~vRe~k~~~~~~~~~~ev~~d~d~dlas~ssS~~ 1126 (1265)
T KOG1920|consen 1047 RVASKAKRDDIIEEVLKPALLEAFGEVLEFLEDVKEQFVKYKKRLLVVRENKEKRPEAFADGEVEHDLDDDLASESSSTN 1126 (1265)
T ss_pred HHHHhcccchHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhchhhhhccccCccccccccccccccc
Confidence 3333330 111111222222223345556666655555544433222223333333333 0 11111
Q ss_pred c--------------cccccccccccc----------chhHHHHHHHH-HHHHhhhhhhhhHHhHHHHHHhhccchhhHh
Q 000608 1238 E--------------GRTRKELRKHEV----------SANDAIREALS-LYESMGDLRKQEAAYAYFQLACYQRDCFLKF 1292 (1395)
Q Consensus 1238 ~--------------~~~~~~~~~~ei----------sa~daireal~-~yeslge~rkqeaa~a~fqlacyqrd~cl~f 1292 (1395)
. .++.|++|++|= =-++|+=.||+ +++.|-.+|-. |++==-||.-
T Consensus 1127 ~~s~ysG~sr~S~~s~~tsKnrR~~ERKr~s~K~G~~yEd~aLl~~L~~~~~~le~~r~E----------~~~Ll~~l~~ 1196 (1265)
T KOG1920|consen 1127 SGSQYSGSSRSSAISARTSKNRRKLERKRASLKEGGPYEDEALLNALSEIARRLENIRNE----------LKRLLEVLVT 1196 (1265)
T ss_pred ccccccCCCCccccchhhhhcchhHHHHhhccCCCCchhHHHHHHHHHHHHHHhhcccHH----------HHHHHHHHHH
Confidence 1 233445554432 23456666776 77777666542 2222235555
Q ss_pred hhccccccCCCCCCchHHHHHH
Q 000608 1293 LESDHKKNNLPKGENSFVHRVR 1314 (1395)
Q Consensus 1293 l~~~~~~~~~~k~e~~~~q~~k 1314 (1395)
.+++...-.+|+.=++++|.++
T Consensus 1197 ~g~~eqa~~Lq~~f~ev~~~i~ 1218 (1265)
T KOG1920|consen 1197 FGMDEQARALQKAFDEVLQAIQ 1218 (1265)
T ss_pred cCCcHHHHHHHHHHHHHHHHHH
Confidence 6666666666666666666654
No 55
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=24.32 E-value=64 Score=25.78 Aligned_cols=29 Identities=31% Similarity=0.387 Sum_probs=18.0
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHHHhhhh
Q 000608 748 SYLALGQAYKEDGQLHQALKTVELACSVY 776 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~velac~vy 776 (1395)
+|+.+|.+|.+.|++.+|+++.+-+...+
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~ 30 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELD 30 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 45566666666666666666666665554
No 56
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=23.71 E-value=1e+02 Score=23.62 Aligned_cols=29 Identities=28% Similarity=0.441 Sum_probs=22.6
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHHHhhhh
Q 000608 748 SYLALGQAYKEDGQLHQALKTVELACSVY 776 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~velac~vy 776 (1395)
++..||.+|..-|++.+|++..+-+=.+|
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~~~ 32 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALEIR 32 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHHHH
Confidence 67789999999999999998776654444
No 57
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=23.60 E-value=71 Score=27.10 Aligned_cols=26 Identities=35% Similarity=0.438 Sum_probs=20.5
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHH
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELA 772 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~vela 772 (1395)
+.++.||++|.+.||+.+|.++++-.
T Consensus 26 ~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 26 EARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45677899999999999999987743
No 58
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=23.25 E-value=70 Score=24.11 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=19.8
Q ss_pred hhhhhhHhhhcchHHHHHHHHHH
Q 000608 748 SYLALGQAYKEDGQLHQALKTVE 770 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~ve 770 (1395)
.++.||++|-.-|++.+|+.+.+
T Consensus 3 a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 3 ARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHh
Confidence 46789999999999999998865
No 59
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=22.76 E-value=95 Score=23.52 Aligned_cols=29 Identities=34% Similarity=0.515 Sum_probs=23.0
Q ss_pred hhhhhhhHhhhcchHHHHHHHHHHHHhhh
Q 000608 747 ESYLALGQAYKEDGQLHQALKTVELACSV 775 (1395)
Q Consensus 747 esylalg~ayked~ql~qalk~velac~v 775 (1395)
+.|+.+|.+|..-|++.+|++..+-|-.+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~ 30 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence 46888999999999999999887766543
No 60
>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]
Probab=22.61 E-value=48 Score=40.46 Aligned_cols=69 Identities=26% Similarity=0.253 Sum_probs=44.8
Q ss_pred EecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHh-h-------hccchhhhh
Q 000608 1126 NCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVE-E-------AGSVSNSLR 1197 (1395)
Q Consensus 1126 ncnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~-~-------~~~~~~~l~ 1197 (1395)
.+|.||||+.|+|.+..||+++--.-.+...=.-|.+.|+.. -.+.- . .+++ +--
T Consensus 55 ~~~~Gh~~~~i~~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L---------------~~~aP~~~l~~vFf~~sG--SeA 117 (449)
T COG0161 55 CVNHGHGRPEIAEAIKKQLDKLPHVMFGGFTHEPAIELAEKL---------------AELAPEGGLDHVFFTDSG--SEA 117 (449)
T ss_pred HhhcCcCCHHHHHHHHHHHHhCCchhhcccCCchHHHHHHHH---------------HHhCCCCCccEEEEeCCc--hHH
Confidence 368999999999999999999865533333333366666532 22222 1 1222 345
Q ss_pred hHHHHHHHHHHHHH
Q 000608 1198 MEVHTQFAHTYLRL 1211 (1395)
Q Consensus 1198 ~ev~tq~ahtylrl 1211 (1395)
+|+--++|.-|-+.
T Consensus 118 vEtAlKma~qY~~~ 131 (449)
T COG0161 118 VETALKMALQYWRA 131 (449)
T ss_pred HHHHHHHHHHHHHh
Confidence 78888899888875
No 61
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=22.48 E-value=57 Score=43.00 Aligned_cols=51 Identities=20% Similarity=0.239 Sum_probs=39.1
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhccccccchhhhhhhhccchhhHHHHHHHHHHH
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFK 1114 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ 1114 (1395)
+...|+.+|++|.+.- |... + +...||...+..++.++|+..|..|+....
T Consensus 284 ~~~~A~~~l~~aL~~~---P~~~-~----------a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p 334 (1157)
T PRK11447 284 QGGKAIPELQQAVRAN---PKDS-E----------ALGALGQAYSQQGDRARAVAQFEKALALDP 334 (1157)
T ss_pred CHHHHHHHHHHHHHhC---CCCH-H----------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 4568888888887754 5432 2 235689999999999999999999998654
No 62
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=21.80 E-value=65 Score=39.76 Aligned_cols=141 Identities=16% Similarity=0.107 Sum_probs=0.0
Q ss_pred hhhhhhhHHHHHHHHhcCCCchhHHHHHHHHhhc-----cccccchhhhhhhhccchhhHHHHHHHHHHHHhccCccEEE
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKG-----WVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIIL 1124 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~g-----wv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niil 1124 (1395)
+.++-+.-+++|++.+ ..+.|+| -++|-|..-..+.+++++|+..|..... +.+.-++.+|-
T Consensus 333 ~a~~~~g~~~~a~~i~-----------~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~--~d~~t~n~lI~ 399 (697)
T PLN03081 333 RIFSRLALLEHAKQAH-----------AGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR--KNLISWNALIA 399 (697)
T ss_pred HHHHhccchHHHHHHH-----------HHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC--CCeeeHHHHHH
Q ss_pred EEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhhhccchhhhhhHHHHHH
Q 000608 1125 INCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQALETAKLEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQF 1204 (1395)
Q Consensus 1125 incnlghgrralaee~~s~~~~~~~h~~~~~~y~~~l~~ak~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ 1204 (1395)
.+|.-|++..|+.---.=+-..++--.+--++...++..+.. +.++++||...+.. -...-..+.|+-+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~-~~~a~~~f~~m~~~----------~g~~p~~~~y~~l 468 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGL-SEQGWEIFQSMSEN----------HRIKPRAMHYACM 468 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCc-HHHHHHHHHHHHHh----------cCCCCCccchHhH
Q ss_pred HHHHHHHhhh
Q 000608 1205 AHTYLRLGML 1214 (1395)
Q Consensus 1205 ahtylrlgml 1214 (1395)
...|-|-|++
T Consensus 469 i~~l~r~G~~ 478 (697)
T PLN03081 469 IELLGREGLL 478 (697)
T ss_pred HHHHHhcCCH
No 63
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=21.06 E-value=55 Score=24.65 Aligned_cols=30 Identities=17% Similarity=0.196 Sum_probs=25.8
Q ss_pred cccccchhhhhhhhccchhhHHHHHHHHHH
Q 000608 1084 WVCNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1395)
Q Consensus 1084 wv~nelgr~rle~~~l~~ae~af~~ai~af 1113 (1395)
.++..+|+.....++.++|...|..|++.-
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~ 31 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALELN 31 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356789999999999999999999998753
No 64
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=20.65 E-value=1e+02 Score=22.40 Aligned_cols=24 Identities=29% Similarity=0.443 Sum_probs=20.8
Q ss_pred hhhhhhHhhhcchHHHHHHHHHHH
Q 000608 748 SYLALGQAYKEDGQLHQALKTVEL 771 (1395)
Q Consensus 748 sylalg~ayked~ql~qalk~vel 771 (1395)
+|.+|=++|.+-|++++|+++.+.
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~ 25 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDE 25 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHH
Confidence 588899999999999999988653
No 65
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=20.57 E-value=4.5e+02 Score=34.38 Aligned_cols=136 Identities=23% Similarity=0.408 Sum_probs=84.4
Q ss_pred hhhhHHHHHHHHhcCCCchhHHHHHHHHhhccc--------------------cccchhhhhhhhccchhhHHHHHHHHH
Q 000608 1053 SALSCYEEAVKALGGLPTVSAELQSVLKKKGWV--------------------CNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1053 ~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv--------------------~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
-||.||+.|..-=-.||..---|--.||.||=| -|-||-+.-|.+.++.|-.-|..|..-
T Consensus 304 lAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~v 383 (966)
T KOG4626|consen 304 LAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALEV 383 (966)
T ss_pred HHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHhh
Confidence 366666665554445555555555666666654 377999999999999999999999988
Q ss_pred HHHhcc-CccEEEEEecCchhhHHHHHHHHHHHhhhhhhhhhHHHHHH---------HHHHHHHHHHHHHHH---HHHHH
Q 000608 1113 FKEVSD-YTNIILINCNLGHGRRALAEEMVSKVESLKIHTIFQNMYKQ---------ALETAKLEYCESLRY---YRAAK 1179 (1395)
Q Consensus 1113 f~ev~d-~~niilincnlghgrralaee~~s~~~~~~~h~~~~~~y~~---------~l~~ak~ey~~sl~y---y~aak 1179 (1395)
|-+.+- |.|+-.|+=- |-.|-+.+.--=|.+.+.+.|-+||.+ -+..|-.-|-+||++ |.+|-
T Consensus 384 ~p~~aaa~nNLa~i~kq----qgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAh 459 (966)
T KOG4626|consen 384 FPEFAAAHNNLASIYKQ----QGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAH 459 (966)
T ss_pred ChhhhhhhhhHHHHHHh----cccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHH
Confidence 887664 4443333322 223334333344567778888888754 344455566666654 55555
Q ss_pred HHHhHHHhhhccc
Q 000608 1180 LQLNSLVEEAGSV 1192 (1395)
Q Consensus 1180 ~~l~~~~~~~~~~ 1192 (1395)
..|-.|-.+..-+
T Consensus 460 sNLasi~kDsGni 472 (966)
T KOG4626|consen 460 SNLASIYKDSGNI 472 (966)
T ss_pred hhHHHHhhccCCc
Confidence 5555555554444
No 66
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=20.23 E-value=61 Score=24.14 Aligned_cols=28 Identities=14% Similarity=0.137 Sum_probs=22.8
Q ss_pred cccchhhhhhhhccchhhHHHHHHHHHH
Q 000608 1086 CNEMGRIRLERKEMEKGEHAFANAINAF 1113 (1395)
Q Consensus 1086 ~nelgr~rle~~~l~~ae~af~~ai~af 1113 (1395)
+..+|..-+..+++++|...|..||...
T Consensus 4 ~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 4 WYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 4568889999999999999999998753
Done!