Query 000608
Match_columns 1395
No_of_seqs 74 out of 76
Neff 2.7
Searched_HMMs 29240
Date Tue Mar 26 16:51:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000608.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_380-383//hhsearch_pdb/000608hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fqi_A Protein DOM3Z, DOM-3 ho 1.0 1 1 72.3 19.1 213 132-436 144-375 (417)
2 3fqg_A Protein DIN1; hydrolase 1.0 1 1 53.4 15.1 229 131-446 85-351 (360)
3 4gps_A KLLA0E02245P; decapping 1.0 1 1 44.8 18.9 224 125-440 167-409 (423)
4 3fp2_A TPR repeat-containing p 1.0 1 1 29.1 1.0 32 744-775 241-272 (537)
5 3ulq_A Response regulator aspa 1.0 1 1 28.9 9.6 74 1050-1131 118-192 (383)
6 3edt_B KLC 2, kinesin light ch 1.0 1 1 28.7 5.7 75 1050-1130 16-92 (283)
7 4a1s_A PINS, partner of inscut 1.0 1 1 28.3 5.7 44 1085-1128 88-131 (411)
8 4a1s_A PINS, partner of inscut 1.0 1 1 28.1 11.8 65 1046-1118 194-258 (411)
9 3sf4_A G-protein-signaling mod 1.0 1 1 27.5 10.2 77 1046-1130 158-234 (406)
10 3sf4_A G-protein-signaling mod 1.0 1 1 26.5 8.8 36 1083-1118 227-262 (406)
No 1
>3fqi_A Protein DOM3Z, DOM-3 homolog Z; hydrolase, protein binding; HET: EPE; 2.01A {Mus musculus} PDB: 3fqj_A*
Probab=1.00 E-value=1 Score=72.29 Aligned_cols=213 Identities=17% Similarity=0.194 Sum_probs=143.5
Q ss_pred CCEEEECCHHHHHHHHCCCCC-CCCEEEEEEEECCEEEECCCCCHHHHHHHHHCCCCCCCHH--HHHHHHHHHHHHHCCC
Q ss_conf 933785454777675315678-9705999994323664215768211237764057721001--2336999866440245
Q 000608 132 DDIDVISPTDILKQIFKIPYS-KARLSISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCA--DQSLFLNFAMHSVRME 208 (1395)
Q Consensus 132 deVDVVSdAEnIKkLlKiPYS-Ks~VSMaVHRIG~TLLLDeg~DieegEkLfrr~~nq~K~~--qKaLlsKFLYhSi~~d 208 (1395)
-++|||+.-.+|.+|+-.||. +....|.|.|+..|+.|.+ +-.+..+.-+ .+..... ...+-.||=.+++...
T Consensus 144 i~aDfVT~Rg~L~kIm~tpye~~~~~~i~v~~~~GtIyl~~--~~~~~~~~~~--~~~~~~~~~~~y~GyKFE~~~T~~~ 219 (417)
T 3fqi_A 144 LAGATVTWRGHLTKLLTTPYERQEGWQLAASRFQGTLYLSE--VETPAARAQR--LARPPLLRELMYMGYKFEQYMCADK 219 (417)
T ss_dssp GGGCEEEEHHHHHHHHHGGGCCSCCEEEEEEEETTEEEEEE--ECCHHHHHHH--HTCCHHHHHHHHHHHHHHHHHEESS
T ss_pred CCCEEECCHHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE--CCCHHHHHCC--CCCCHHHHHHHHHHHHHHHHHHCCC
T ss_conf 23519915689999984703588885999999899999983--4835554302--4677367788777998777621389
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 57999999997300136787789899887777512220038998888864334776432111125889998644555578
Q 000608 209 ACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASHVGE 288 (1395)
Q Consensus 209 ~~~~PpTh~~~se~q~~s~~lPg~~~s~sv~~~~~~s~q~~~s~~~~h~~~~~~g~~l~spk~~~n~~~dPv~~~~~Vge 288 (1395)
... .++.. .++
T Consensus 220 p~~--------------------------------------------------------~~~~~-----~~V-------- 230 (417)
T 3fqi_A 220 PGG--------------------------------------------------------SPDPS-----GEV-------- 230 (417)
T ss_dssp TTC--------------------------------------------------------CCCTT-----SCE--------
T ss_pred CCC--------------------------------------------------------CCCCC-----CCC--------
T ss_conf 877--------------------------------------------------------76766-----554--------
Q ss_pred CCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCEECCCCCCEECCCC----C--EEEEEEECCCCCCCCC--------HHH
Q ss_conf 8976511210013668877532776653131011045620003897----5--0489964156522580--------145
Q 000608 289 KPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSNEK----Y--VAVSLHLWDVARQVTP--------LTW 354 (1395)
Q Consensus 289 ~p~~s~~esEk~~~~~~~~F~Rni~WtFedi~MLVGSDlPIFg~~~----~--PaVSLRLrD~skpInv--------LTg 354 (1395)
..+..|--++.=+++++++|+|.-+--+.... . -=|-|+..- ...+. .--
T Consensus 231 --------------n~~~qf~sVvrt~lg~~~ll~~gEVDaid~~~~~~~~~~~yVELKTs~--~~~~~~~~~~f~r~Kl 294 (417)
T 3fqi_A 231 --------------NTNVAYCSVLRSRLGNHPLLFSGEVDCLNPQAPCTQPPSCYVELKTSK--EMHSPGQWRSFYRHKL 294 (417)
T ss_dssp --------------ETTCEEEEEEEEEETTEEEEEEEECCEECTTCSSCSTTTTEEEEEEEE--CCCSHHHHHHHHHHHH
T ss_pred --------------CCCCEEEEEEEEEECCEEEEEEEEECCCCCCCCCCCCCCEEEEEEEEE--CCCCHHHHHHHHHHHH
T ss_conf --------------577408999984407722798665402137776778876269999985--4668266532547778
Q ss_pred HHHHHHHHHCCCCCEEEEEE-ECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCC-CCEEE
Q ss_conf 89999865118880788884-24400001520133212235988899887681568752789999996620579-94489
Q 000608 355 LEAWLDNVMASVPELAICYH-ENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGLSVLRFLQENCKQD-PGAYW 432 (1395)
Q Consensus 355 LDyWLDNlMaNVPElamCyH-~nGIVQ~YELiKTeDIP~Leg~s~~gas~FsPqVV~~~AqnILsFLKsNCTKd-GhTYW 432 (1395)
+.+|+..-+.+||.+++.++ .+|+|+..|-++|++||.+-.. ....++|.+-.+++..+|.||++..+.| ..+-|
T Consensus 295 lk~W~QSFL~GVp~IivGfRD~~g~l~~ie~~~t~eIp~l~k~---~~~~W~~~vc~~f~~~~L~~Ik~~v~~Dd~~~vy 371 (417)
T 3fqi_A 295 LKWWAQSFLPGVPHVVAGFRNPEGFVCSLKTFPTMEMFENVRN---DREGWNPSVCMNFCAAFLSFAQSTVVQDDPRLVH 371 (417)
T ss_dssp HHHHHHHHTTTCCEEEEEEECTTSEEEEEEEEEGGGGGGGTTT---CTTCCCHHHHHHHHHHHHHHHHHHCCSBCTTEEE
T ss_pred HHHHHHHHHCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCEEE
T ss_conf 9999997504898799999779984999999974343456651---4699998999999999999998643667997799
Q ss_pred EEEE
Q ss_conf 9840
Q 000608 433 LYKS 436 (1395)
Q Consensus 433 LfK~ 436 (1395)
+|.-
T Consensus 372 ~~~~ 375 (417)
T 3fqi_A 372 LFSW 375 (417)
T ss_dssp EEEE
T ss_pred EEEE
T ss_conf 9998
No 2
>3fqg_A Protein DIN1; hydrolase, mRNA processing, nucleus, phosphoprotein, rRNA processing, transcription, transcription regulation; 2.00A {Schizosaccharomyces pombe} PDB: 3fqd_B
Probab=1.00 E-value=1 Score=53.42 Aligned_cols=229 Identities=11% Similarity=0.140 Sum_probs=143.1
Q ss_pred CCCEEEECCHHHHHHHHCCCCC-CCCEE----EEEEEECCEEEECCCCCHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHH
Q ss_conf 9933785454777675315678-97059----999943236642157682112377640577210012336999866440
Q 000608 131 GDDIDVISPTDILKQIFKIPYS-KARLS----ISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKCADQSLFLNFAMHSV 205 (1395)
Q Consensus 131 gdeVDVVSdAEnIKkLlKiPYS-Ks~VS----MaVHRIG~TLLLDeg~DieegEkLfrr~~nq~K~~qKaLlsKFLYhSi 205 (1395)
.-++|||+--.+|.+|+-.||. +.... |.|. +|+++-+ . ..+.... .. ....+..+-.||=-+++
T Consensus 85 ~~~adfVt~Rg~L~kim~tPye~~~~w~~~~vm~a~---n~iy~~~--~--~~~~~~~-~~--~~~~~~y~GyKFE~l~T 154 (360)
T 3fqg_A 85 QMNSSFLTWRGLITKIMCAPLDPRNHWETYLVMDPT---SGIIMME--E--RTRSETS-YA--NQDRMCYWGYKFEAIST 154 (360)
T ss_dssp CCCSSEEEEHHHHHHHHHTTTCTTCCEEEEEEECTT---TCCEEEE--C--CC----------CCSHHHHHHHHHHHHTE
T ss_pred CCCCEEEEEHHHHHHHHHCCCCCCCCCCEEEEEEEE---CCEEEEE--E--CCCCCCC-CH--HHHHHCCHHHHHHHHHC
T ss_conf 203079940889999984704577886520169974---8899985--2--0236788-63--77776105576788710
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 24557999999997300136787789899887777512220038998888864334776432111125889998644555
Q 000608 206 RMEACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVKKASH 285 (1395)
Q Consensus 206 ~~d~~~~PpTh~~~se~q~~s~~lPg~~~s~sv~~~~~~s~q~~~s~~~~h~~~~~~g~~l~spk~~~n~~~dPv~~~~~ 285 (1395)
-....+. ++. . .+ +++.. .|+
T Consensus 155 ~~~p~~~-~sr--------------------~---------------------------~i-e~~~~-----~~V----- 175 (360)
T 3fqg_A 155 LPEIWDA-CSR--------------------D---------------------------QI-EQRDN-----QDV----- 175 (360)
T ss_dssp EECCTTC-----------------------------------------------------------------CCB-----
T ss_pred CCCCCCC-CCC--------------------C---------------------------CC-CCCCC-----CCC-----
T ss_conf 6887765-540--------------------0---------------------------02-46666-----655-----
Q ss_pred CCCCCCCCHHHHHCCCCCCCCCCCEEEEEEECCCCEECCCCCCEECC-------------------------CC--CEEE
Q ss_conf 57889765112100136688775327766531310110456200038-------------------------97--5048
Q 000608 286 VGEKPRCSIQESEKHRRVGNDGFLRVLFWQFHNFRMLLGSDLLLFSN-------------------------EK--YVAV 338 (1395)
Q Consensus 286 Vge~p~~s~~esEk~~~~~~~~F~Rni~WtFedi~MLVGSDlPIFg~-------------------------~~--~PaV 338 (1395)
..+..|--++.=+++++++|+|.-+-=+-+ +. ---|
T Consensus 176 -----------------n~~~qf~sVvrt~lg~~~ll~~aEVDci~d~~p~~~~~~~~~~~~~~~~~d~~~~~~~~~~yV 238 (360)
T 3fqg_A 176 -----------------VPDEQYCSIVKINIGKSKLILAGEVDCIWDKKPCSAKESDVHSDDGTIEEDASNAENPNLHYV 238 (360)
T ss_dssp -----------------CTTSEEEEEEEEEETTEEEEEEEECCEESSCCCC---------------------CCSGGGEE
T ss_pred -----------------CCCCCEEEEEEEECCCEEEEEECCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEE
T ss_conf -----------------677647999996518746998413222237785443222223333333333222467878579
Q ss_pred EEEECCC--CCCCCC-HHHHHHHHHHHHCCCCCEEEEEE-ECCEEEEEEEECCCCCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 9964156--522580-14589999865118880788884-2440000152013321223598889988768156875278
Q 000608 339 SLHLWDV--ARQVTP-LTWLEAWLDNVMASVPELAICYH-ENGVVQGYELLKTDDIFLLKGVSDDGTPAFHPHVVQQSGL 414 (1395)
Q Consensus 339 SLRLrD~--skpInv-LTgLDyWLDNlMaNVPElamCyH-~nGIVQ~YELiKTeDIP~Leg~s~~gas~FsPqVV~~~Aq 414 (1395)
-|+.+-. +...+. .--+..|+-.-+.+||.+++-++ .+|+|++-+-+.|.+||.+-... .....++|.+--+.+.
T Consensus 239 ELKTs~~~~~~~~~f~~Kllk~W~QSFL~Gv~~IvvGfRd~~g~v~~ie~~~t~eiP~~~~~~-~~~~~W~~~~C~~f~~ 317 (360)
T 3fqg_A 239 ELKTSKKYPLENYGMRKKLLKYWAQSFLLGIGRIIIGFRDDNGILIEMKELFTHQIPKMLRPY-FKPNDWTPNRLLVVLE 317 (360)
T ss_dssp EEEEECCCCTTCHHHHHHHHHHHHHHHHHTCCEEEEEEECTTCBEEEEEEEETTHHHHHHGGG-CCTTCCCHHHHHHHHH
T ss_pred EEEEECCCCCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCCCEEEEEEEEHHHHHHHHHHC-CCCCCCCHHHHHHHHH
T ss_conf 998550555762367788999999975269988999997699819998999866757988613-6779989899999999
Q ss_pred HHHHHHHHHCCC-CCCEEEEE-EECCCCCEEEEC
Q ss_conf 999999662057-99448998-407997089610
Q 000608 415 SVLRFLQENCKQ-DPGAYWLY-KSAGEDVIRLFD 446 (1395)
Q Consensus 415 nILsFLKsNCTK-dGhTYWLf-K~~geDvVkLYD 446 (1395)
.+|+||++.-+. ++.|-|.+ ...+..+|.++-
T Consensus 318 ~~L~~ik~~v~~~~~~~v~~~~~~~~~~~i~~~~ 351 (360)
T 3fqg_A 318 HALEWIKQTVKQHPPSTEFTLSYTGGSKLVLRQI 351 (360)
T ss_dssp HHHHHHHHHHTTSCTTCEEEEEECSTTEEEEEEC
T ss_pred HHHHHHHHHCCCCCCCEEEEEEEECCCCEEEEEE
T ss_conf 9999999752557996699999948998688850
No 3
>4gps_A KLLA0E02245P; decapping, 5'-3' exoribonuclease, HYDR; HET: CIT; 2.40A {Kluyveromyces lactis} PDB: 4gpu_A
Probab=1.00 E-value=1 Score=44.78 Aligned_cols=224 Identities=9% Similarity=0.128 Sum_probs=134.8
Q ss_pred HCCCCCCCCEEEECCHHHHHHHHCCCCCCCCEE-EEEEEECCEEEECCCCCHHHHHHHHHCCCCCCCH--HHHHHHHHHH
Q ss_conf 021224993378545477767531567897059-9999432366421576821123776405772100--1233699986
Q 000608 125 SGLVEYGDDIDVISPTDILKQIFKIPYSKARLS-ISVHRVGQTLVLNYGADVEEGEKLIRRHGNQSKC--ADQSLFLNFA 201 (1395)
Q Consensus 125 s~~~~~gdeVDVVSdAEnIKkLlKiPYSKs~VS-MaVHRIG~TLLLDeg~DieegEkLfrr~~nq~K~--~qKaLlsKFL 201 (1395)
.+=.....++|||+--.+|.+|+-.||.+.... +++.+.+.|+++.. +.+. ++--....++... ++-.+-.||-
T Consensus 167 ~ek~~~~~dadfVT~RG~LtKIm~tPYe~~~~~~~~a~~~~g~ifl~~--~~~~-e~~~~~~~~~~~~~k~m~YwGyKFE 243 (423)
T 4gps_A 167 YEKTLNPEKTTFVSLRHHIIDIIMCPFLDEPLSLLMTVQPDKNILISV--DKSK-DKPNGIHETRNSFNKKICYTGFALE 243 (423)
T ss_dssp HGGGSCTTSEEEEEEHHHHHHHHHGGGCSSCEEEEEEECTTSCEEEEC--C-----------------CHHHHHHHHHHH
T ss_pred HHCCCCCCCCEEECCCHHHHHHHHCCCCCCCCEEEEEEEECCEEEEEE--CCCH-HCCCCCCCCCCHHHHHHHHHHHHHH
T ss_conf 845169988749854379999983866699830689999799999996--6512-1332233576678898878655365
Q ss_pred HHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 64402455799999999730013678778989988777751222003899888886433477643211112588999864
Q 000608 202 MHSVRMEACDCPPTHQSPSERQANSSVLPGRDASNFVGQTEDVARKEGSGHFSEYPKVQQDSSIWDSRKNKRNKNHDPVK 281 (1395)
Q Consensus 202 YhSi~~d~~~~PpTh~~~se~q~~s~~lPg~~~s~sv~~~~~~s~q~~~s~~~~h~~~~~~g~~l~spk~~~n~~~dPv~ 281 (1395)
.+++... +. .|+
T Consensus 244 q~~Te~~-----~~--------------------------------------------------------------~~V- 255 (423)
T 4gps_A 244 DLLIESP-----TE--------------------------------------------------------------GHI- 255 (423)
T ss_dssp HHHBC---------------------------------------------------------------------------
T ss_pred HHHCCCC-----CC--------------------------------------------------------------CCC-
T ss_conf 5320588-----88--------------------------------------------------------------986-
Q ss_pred CCCCCCCCCCCCHHHHHCCCCCCCCCCCEEEEEEEC-CCCEECCCCCCEECCCCCEEEEEEECCCCCCCC---CHHHHHH
Q ss_conf 455557889765112100136688775327766531-310110456200038975048996415652258---0145899
Q 000608 282 KASHVGEKPRCSIQESEKHRRVGNDGFLRVLFWQFH-NFRMLLGSDLLLFSNEKYVAVSLHLWDVARQVT---PLTWLEA 357 (1395)
Q Consensus 282 ~~~~Vge~p~~s~~esEk~~~~~~~~F~Rni~WtFe-di~MLVGSDlPIFg~~~~PaVSLRLrD~skpIn---vLTgLDy 357 (1395)
..+..|--++.-+++ ++++|+|.-+--+....--=|-|+..-+.+..+ ..--+..
T Consensus 256 ---------------------n~~eqfcsVVrT~lgg~ikLL~gaEVDcid~~~~~yVELKTs~~~r~~~~~~rrKLLKw 314 (423)
T 4gps_A 256 ---------------------LEHELYYSIVHGSLNDEIDLLIQAEMDSINTLTDTYTEIKSSVHFKLGNTYHRRKLLRM 314 (423)
T ss_dssp -----------------------CEEEEEEEEEECSSSEEEEEEEECCEEETTTTEEEEEEEECCCCTTCHHHHHHHHHH
T ss_pred ---------------------CCCCCEEEEEECCCCCCCEEEEEECCCCCCCCCCCEEEEEECCCCCCCCHHHHHHHHHH
T ss_conf ---------------------56743899997566777517995011213599883499973300035202557789999
Q ss_pred HHHHHHCCCCCEEEEEEE--CCEEEEEEEECCCCCCCCC-CC----CCCCCCCCCHHHHHHHHHHHHHHHHHHC-----C
Q ss_conf 998651188807888842--4400001520133212235-98----8899887681568752789999996620-----5
Q 000608 358 WLDNVMASVPELAICYHE--NGVVQGYELLKTDDIFLLK-GV----SDDGTPAFHPHVVQQSGLSVLRFLQENC-----K 425 (1395)
Q Consensus 358 WLDNlMaNVPElamCyH~--nGIVQ~YELiKTeDIP~Le-g~----s~~gas~FsPqVV~~~AqnILsFLKsNC-----T 425 (1395)
|+-.-+.+||.+++=++- +|+|+.-|-+.|.|||.+- +. +...-.+|.+++.-+.-..|++++..++ .
T Consensus 315 W~QSFLlGVpkIIVGfRDd~~GiL~~Ie~~~T~EIP~~vk~~~~~W~~~~CiNF~a~i~~~wL~~ii~~I~~~~~~~~~~ 394 (423)
T 4gps_A 315 WIQTNLLPKSDLLIGFRNSYSNELEQLKAYKIQDIYHKINNSSIVGKPGKFYKFNPNVANDWFQHIFQVLKQNLLLLSQE 394 (423)
T ss_dssp HHHHHTSSSCEEEEEEECTTTCBEEEEEEECHHHHHHHHCCTTGGGSCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCCEEEEEEECCCCCEEEEEEEEEHHHHHHHHHCCCCCCCCCHHHCCCHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_conf 99975439987999993389877999789988887999861789999515417478999999999999861230344579
Q ss_pred CCCCEEEEEEECCCC
Q ss_conf 799448998407997
Q 000608 426 QDPGAYWLYKSAGED 440 (1395)
Q Consensus 426 KdGhTYWLfK~~geD 440 (1395)
..+-+|-+.-+.+-.
T Consensus 395 ~~~~~f~v~~D~~~~ 409 (423)
T 4gps_A 395 STSTTFKVQIDTNLT 409 (423)
T ss_dssp CSCSEEEEEECTTCE
T ss_pred CCCEEEEEEECCCCE
T ss_conf 984489998779833
No 4
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=1.00 E-value=1 Score=29.10 Aligned_cols=32 Identities=9% Similarity=-0.106 Sum_probs=22.3
Q ss_pred HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHH
Q ss_conf 85233565557531002799999899887665
Q 000608 744 LLGESYLALGQAYKEDGQLHQALKTVELACSV 775 (1395)
Q Consensus 744 llgesylalg~ayked~ql~qalk~velac~v 775 (1395)
.+++.|..+|..|...|+..+|++..+-+-..
T Consensus 241 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~ 272 (537)
T 3fp2_A 241 NAALALCYTGIFHFLKNNLLDAQVLLQESINL 272 (537)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHC
T ss_conf 99999999999987545578999999999866
No 5
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=1.00 E-value=1 Score=28.88 Aligned_cols=74 Identities=14% Similarity=0.029 Sum_probs=46.8
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCC-CCCEEEEEEC
Q ss_conf 244543079999987328996048899998730311100001356321123126899999999987136-7657999804
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD-YTNIILINCN 1128 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d-~~niilincn 1128 (1395)
+...|+.+|..|...+...+... ..+++++.+|......++..+|...|..|+..|++..+ ..+++.+..|
T Consensus 118 ~~~~A~~~~~~al~~~~~~~~~~--------~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 118 EYLSAIKFFKKAESKLIFVKDRI--------EKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp CHHHHHHHHHHHHTTGGGCCCHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHCCCHH--------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHH
T ss_conf 99999999999999986099899--------9999999999999980887999999999999998676643779989999
Q ss_pred CCH
Q ss_conf 762
Q 000608 1129 LGH 1131 (1395)
Q Consensus 1129 lgh 1131 (1395)
||.
T Consensus 190 lg~ 192 (383)
T 3ulq_A 190 FAT 192 (383)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 999
No 6
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=1.00 E-value=1 Score=28.70 Aligned_cols=75 Identities=13% Similarity=0.123 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHH--CCCCCEEEEEE
Q ss_conf 2445430799999873289960488999987303111000013563211231268999999999871--36765799980
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEV--SDYTNIILINC 1127 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev--~d~~niilinc 1127 (1395)
+...|+.+|++|...+...... -.....++++.+|......+++.+|...|..|+..+++. .|+.....+..
T Consensus 16 ~~~~A~~~~~~al~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 89 (283)
T 3edt_B 16 PRGSAVPLCKQALEDLEKTSGH------DHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLN 89 (283)
T ss_dssp CSSSHHHHHHHHHHHHHHHHCS------SSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
T ss_conf 7789999999999999986399------9878999999999999986669999999999999999873876669999998
Q ss_pred CCC
Q ss_conf 476
Q 000608 1128 NLG 1130 (1395)
Q Consensus 1128 nlg 1130 (1395)
+||
T Consensus 90 ~l~ 92 (283)
T 3edt_B 90 NLA 92 (283)
T ss_dssp HHH
T ss_pred HHH
T ss_conf 899
No 7
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=28.30 Aligned_cols=44 Identities=11% Similarity=0.122 Sum_probs=19.1
Q ss_pred CCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEEC
Q ss_conf 11000013563211231268999999999871367657999804
Q 000608 1085 VCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCN 1128 (1395)
Q Consensus 1085 v~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincn 1128 (1395)
+++.+|......++..+|...|..|+..++...|......+..+
T Consensus 88 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 131 (411)
T 4a1s_A 88 IYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGN 131 (411)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHHHHH
T ss_conf 99999999998789999999999999999871573679999999
No 8
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=1.00 E-value=1 Score=28.13 Aligned_cols=65 Identities=18% Similarity=0.349 Sum_probs=30.2
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 4001244543079999987328996048899998730311100001356321123126899999999987136
Q 000608 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD 1118 (1395)
Q Consensus 1046 d~e~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d 1118 (1395)
++...+-.|+.+|+++.......+. .....++++.+|...+..++..+|...|..++..+.+..+
T Consensus 194 ~a~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 258 (411)
T 4a1s_A 194 DVKEALTRAVEFYQENLKLMRDLGD--------RGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD 258 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTC--------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--------HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 1069999999999999999997388--------7999999999999999858829999999999999985199
No 9
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=27.51 Aligned_cols=77 Identities=19% Similarity=0.240 Sum_probs=42.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEE
Q ss_conf 40012445430799999873289960488999987303111000013563211231268999999999871367657999
Q 000608 1046 DAENNLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILI 1125 (1395)
Q Consensus 1046 d~e~nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niili 1125 (1395)
.+...+..|+..|+.+.......+. ....+++++.+|...+..++..+|...|..|+..+....+...++.+
T Consensus 158 ~a~~~~~~A~~~~~~al~~~~~~~~--------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 229 (406)
T 3sf4_A 158 EVRDALQAAVDFYEENLSLVTALGD--------RAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRA 229 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCC--------CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCCCHHHHHH
T ss_conf 6789999999999999999985567--------47789999999999998368999999999999999862785899999
Q ss_pred EECCC
Q ss_conf 80476
Q 000608 1126 NCNLG 1130 (1395)
Q Consensus 1126 ncnlg 1130 (1395)
+.++|
T Consensus 230 ~~~la 234 (406)
T 3sf4_A 230 YSNLG 234 (406)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 99999
No 10
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=1.00 E-value=1 Score=26.53 Aligned_cols=36 Identities=11% Similarity=0.212 Sum_probs=20.7
Q ss_pred CCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCC
Q ss_conf 311100001356321123126899999999987136
Q 000608 1083 GWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSD 1118 (1395)
Q Consensus 1083 gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d 1118 (1395)
.++++.+|...+..++..+|...|..|+..+.+..+
T Consensus 227 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~ 262 (406)
T 3sf4_A 227 RRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKD 262 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCC
T ss_conf 999999999998849969999999999999885767
Done!