Query 000608
Match_columns 1395
No_of_seqs 74 out of 76
Neff 2.7
Searched_HMMs 13730
Date Tue Mar 26 16:58:35 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000608.a3m -d /local_scratch/syshi/scop70.hhm -v 0 -o /local_scratch/syshi/H1_380-383//hhsearch_scop/000608hhsearch_scop
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1qqea_ a.118.8.1 (A:) Vesicul 46.2 5.7 0.00041 14.7 5.7 44 1166-1215 132-175 (290)
2 d1hz4a_ a.118.8.2 (A:) Transcr 18.8 16 0.0012 11.5 10.7 72 1051-1131 28-99 (366)
3 d1w3ba_ a.118.8.1 (A:) O-GlcNA 8.7 27 0.002 9.9 -0.6 25 749-773 36-60 (388)
4 d1m0ja_ g.46.1.1 (A:) Metallot 7.2 45 0.0032 8.3 1.3 21 891-911 7-27 (28)
5 d1i9sa_ c.45.1.1 (A:) mRNA cap 7.1 45 0.0033 8.3 4.5 31 1105-1136 101-131 (194)
6 d1dy2a_ d.169.1.5 (A:) Endosta 5.9 57 0.0041 7.6 2.3 20 159-183 50-71 (168)
7 d2hr2a1 a.118.8.8 (A:2-157) Hy 5.7 59 0.0043 7.4 6.4 27 1093-1119 19-45 (156)
8 d1hh8a_ a.118.8.1 (A:) Neutrop 5.4 64 0.0046 7.2 6.0 17 1198-1214 70-86 (192)
9 d1a17a_ a.118.8.1 (A:) Protein 5.0 71 0.0052 6.9 3.4 49 1050-1112 25-73 (159)
10 d1fcha_ a.118.8.1 (A:) Peroxin 4.7 75 0.0055 6.7 1.9 49 1050-1112 34-82 (323)
No 1
>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=46.18 E-value=5.7 Score=14.66 Aligned_cols=44 Identities=16% Similarity=0.160 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHH
Q ss_conf 99999988999999987677763132012345678888788898776533
Q 000608 1166 LEYCESLRYYRAAKLQLNSLVEEAGSVSNSLRMEVHTQFAHTYLRLGMLL 1215 (1395)
Q Consensus 1166 ~ey~~sl~yy~aak~~l~~~~~~~~~~~~~l~~ev~tq~ahtylrlgmll 1215 (1395)
-.|.+++.+|..|..-. .+.+ .......++.+.|..|..+|..-
T Consensus 132 ~~~~~A~~~~~~A~~l~----~~~~--~~~~~~~~~~~la~~~~~~g~y~ 175 (290)
T d1qqea_ 132 HDYAKAIDCYELAGEWY----AQDQ--SVALSNKCFIKCADLKALDGQYI 175 (290)
T ss_dssp CCHHHHHHHHHHHHHHH----HHTT--CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHH----HHCC--CHHHHHHHHHHHHHHHHHCCHHH
T ss_conf 78999988999999998----7337--60333468899999999817399
No 2
>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}
Probab=18.80 E-value=16 Score=11.48 Aligned_cols=72 Identities=8% Similarity=-0.009 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHCCCCCEEEEEECCC
Q ss_conf 44543079999987328996048899998730311100001356321123126899999999987136765799980476
Q 000608 1051 LSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINAFKEVSDYTNIILINCNLG 1130 (1395)
Q Consensus 1051 l~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~af~ev~d~~niilincnlg 1130 (1395)
.-.|+.+|++|... .|..-... +..+.+.+|......+++..|...|..|+.......++.+.+...++++
T Consensus 28 ~~~A~~~~~~aL~~---~~~~~~~~------~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 28 PDEAERLAKLALEE---LPPGWFYS------RIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHHHHHHHHT---CCTTCHHH------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---CCCCCCHH------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_conf 99999999999854---86899679------9999999999999879999999999999999875011489999998887
Q ss_pred H
Q ss_conf 2
Q 000608 1131 H 1131 (1395)
Q Consensus 1131 h 1131 (1395)
.
T Consensus 99 ~ 99 (366)
T d1hz4a_ 99 E 99 (366)
T ss_dssp H
T ss_pred H
T ss_conf 8
No 3
>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}
Probab=8.66 E-value=27 Score=9.86 Aligned_cols=25 Identities=20% Similarity=0.115 Sum_probs=13.4
Q ss_pred HHHHHHHHHCCHHHHHHHHHHHHHH
Q ss_conf 5655575310027999998998876
Q 000608 749 YLALGQAYKEDGQLHQALKTVELAC 773 (1395)
Q Consensus 749 ylalg~ayked~ql~qalk~velac 773 (1395)
+..||..|..-|++.+|++..+.|-
T Consensus 36 ~~~la~~~~~~~~~~~A~~~~~~al 60 (388)
T d1w3ba_ 36 LLLLSSIHFQCRRLDRSAHFSTLAI 60 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
T ss_conf 9999999998699999999999999
No 4
>d1m0ja_ g.46.1.1 (A:) Metallothionein {Black rockcod (Notothenia coriiceps) [TaxId: 8208]}
Probab=7.16 E-value=45 Score=8.32 Aligned_cols=21 Identities=43% Similarity=0.699 Sum_probs=14.8
Q ss_pred HHCCCCCCCCCCEEECCCCCC
Q ss_conf 523731368422010234578
Q 000608 891 KLGQYQNCSSCFLVNCSCQSD 911 (1395)
Q Consensus 891 klg~~qnc~scslvncscqsd 911 (1395)
|-|.+.--+||.-.||||.|-
T Consensus 7 ksgtcncggsctctncscksc 27 (28)
T d1m0ja_ 7 KSGTCNCGGSCTCTNCSCKSC 27 (28)
T ss_dssp HHSSCCCSSSCCSSSCCCTTT
T ss_pred CCCCCCCCCCEEECCCCCCCC
T ss_conf 574446688566567324327
No 5
>d1i9sa_ c.45.1.1 (A:) mRNA capping enzyme, triphosphatase domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=7.13 E-value=45 Score=8.31 Aligned_cols=31 Identities=23% Similarity=0.470 Sum_probs=20.3
Q ss_pred HHHHHHHHHHHHCCCCCEEEEEECCCHHHHHH
Q ss_conf 99999999987136765799980476245787
Q 000608 1105 AFANAINAFKEVSDYTNIILINCNLGHGRRAL 1136 (1395)
Q Consensus 1105 af~~ai~af~ev~d~~niilincnlghgrral 1136 (1395)
.|.+++..|.+. +-.+.|+|-|..|.||-+.
T Consensus 101 ~f~~~v~~~~~~-~~~~~V~VHC~~G~~Rsg~ 131 (194)
T d1i9sa_ 101 TFIRLCERFNER-SPPELIGVHCTHGFNRTGF 131 (194)
T ss_dssp HHHHHHTTC------CCEEEEECSSSSHHHHH
T ss_pred HHHHHHHHHHHH-CCCCEEEEECCCCCCCCHH
T ss_conf 999999999984-8998399987887773389
No 6
>d1dy2a_ d.169.1.5 (A:) Endostatin domain of collagen alpha1(xv) {Mouse (Mus musculus) [TaxId: 10090]}
Probab=5.91 E-value=57 Score=7.56 Aligned_cols=20 Identities=20% Similarity=0.413 Sum_probs=8.4
Q ss_pred EEEEECC--EEEECCCCCHHHHHHHHH
Q ss_conf 9994323--664215768211237764
Q 000608 159 SVHRVGQ--TLVLNYGADVEEGEKLIR 183 (1395)
Q Consensus 159 aVHRIG~--TLLLDeg~DieegEkLfr 183 (1395)
.|||..+ +=+++- .||.||.
T Consensus 50 iVr~~dR~~lPiVNl-----rgevLF~ 71 (168)
T d1dy2a_ 50 VVRKAERFGLPIVNL-----KGQVLFN 71 (168)
T ss_dssp SSCGGGSSSCCEECT-----TSCEEES
T ss_pred EECCCCCCCCCEEEC-----CCCCCHH
T ss_conf 024200478872743-----6765054
No 7
>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}
Probab=5.74 E-value=59 Score=7.45 Aligned_cols=27 Identities=11% Similarity=0.111 Sum_probs=11.5
Q ss_pred HHHHHCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 563211231268999999999871367
Q 000608 1093 RLERKEMEKGEHAFANAINAFKEVSDY 1119 (1395)
Q Consensus 1093 rle~~~l~~ae~af~~ai~af~ev~d~ 1119 (1395)
.+..+++..|...|..||..+++..|.
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~ 45 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPE 45 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTT
T ss_pred HHHCCCHHHHHHHHHHHHHHCHHHHHH
T ss_conf 998599999999999999868442010
No 8
>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.40 E-value=64 Score=7.21 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHH
Q ss_conf 67888878889877653
Q 000608 1198 MEVHTQFAHTYLRLGML 1214 (1395)
Q Consensus 1198 ~ev~tq~ahtylrlgml 1214 (1395)
-..|.+.+..|.++|..
T Consensus 70 ~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 70 AVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHHCCH
T ss_conf 46678899999854249
No 9
>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.97 E-value=71 Score=6.89 Aligned_cols=49 Identities=14% Similarity=0.153 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 244543079999987328996048899998730311100001356321123126899999999
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
+...|+.||+.|...- |. ..+.++.+|.+.+..++..+|...|..||..
T Consensus 25 ~y~~A~~~~~~al~~~---p~-----------~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~ 73 (159)
T d1a17a_ 25 DYENAIKFYSQAIELN---PS-----------NAIYYGNRSLAYLRTECYGYALGDATRAIEL 73 (159)
T ss_dssp CHHHHHHHHHHHHHHS---TT-----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHCCCCC---HH-----------HHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
T ss_conf 9999999866021100---01-----------1333245678887405421288889999987
No 10
>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.74 E-value=75 Score=6.70 Aligned_cols=49 Identities=18% Similarity=0.209 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHCCCHHHHHHHHHHHH
Q ss_conf 244543079999987328996048899998730311100001356321123126899999999
Q 000608 1050 NLSSALSCYEEAVKALGGLPTVSAELQSVLKKKGWVCNEMGRIRLERKEMEKGEHAFANAINA 1112 (1395)
Q Consensus 1050 nl~~al~cy~~a~~al~~lp~~~~e~~sv~kk~gwv~nelgr~rle~~~l~~ae~af~~ai~a 1112 (1395)
++..|+.||+.+.+.- |... .++..||.+....++..+|...|..|+..
T Consensus 34 ~~~~A~~~~~~al~~~---P~~~-----------~a~~~lg~~~~~~~~~~~A~~~~~~al~~ 82 (323)
T d1fcha_ 34 DLPNAVLLFEAAVQQD---PKHM-----------EAWQYLGTTQAENEQELLAISALRRCLEL 82 (323)
T ss_dssp CHHHHHHHHHHHHHSC---TTCH-----------HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHC---CCCH-----------HHHHHHHHHHHHCCCHHHHHHHHHHHHCC
T ss_conf 9999999999999868---9989-----------99999999999837758899999851002
Done!