Query 000609
Match_columns 1393
No_of_seqs 175 out of 295
Neff 6.1
Searched_HMMs 46136
Date Mon Apr 1 20:33:16 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000609.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000609hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1525 Sister chromatid cohes 100.0 1E-137 3E-142 1319.0 82.3 1064 10-1103 6-1118(1266)
2 KOG1525 Sister chromatid cohes 99.7 2.8E-13 6E-18 177.0 46.9 487 640-1255 583-1090(1266)
3 PTZ00429 beta-adaptin; Provisi 98.6 0.00022 4.8E-09 92.1 38.1 390 269-755 39-437 (746)
4 KOG2171 Karyopherin (importin) 98.5 0.0011 2.4E-08 86.3 42.0 566 222-855 4-595 (1075)
5 PTZ00429 beta-adaptin; Provisi 98.2 0.0051 1.1E-07 79.9 37.1 122 246-373 89-210 (746)
6 KOG1020 Sister chromatid cohes 98.0 0.15 3.2E-06 68.7 44.9 135 297-443 810-945 (1692)
7 PF01602 Adaptin_N: Adaptin N 97.9 0.003 6.6E-08 79.0 28.3 117 245-369 62-179 (526)
8 KOG1020 Sister chromatid cohes 97.8 0.22 4.7E-06 67.1 42.8 164 246-413 797-964 (1692)
9 PRK09687 putative lyase; Provi 97.6 0.00039 8.4E-09 80.7 12.3 145 246-407 41-186 (280)
10 PF01602 Adaptin_N: Adaptin N 97.6 0.13 2.8E-06 64.6 34.5 239 244-533 133-374 (526)
11 PRK09687 putative lyase; Provi 97.4 0.001 2.2E-08 77.2 12.7 129 262-407 90-219 (280)
12 KOG1824 TATA-binding protein-i 97.4 1 2.2E-05 58.6 47.8 366 21-413 24-468 (1233)
13 KOG1062 Vesicle coat complex A 97.2 0.22 4.7E-06 63.6 29.6 354 259-714 104-469 (866)
14 PRK13800 putative oxidoreducta 97.1 0.057 1.2E-06 72.5 24.9 262 63-405 628-895 (897)
15 PF12717 Cnd1: non-SMC mitotic 96.9 0.033 7.1E-07 60.4 16.6 94 316-411 1-94 (178)
16 KOG1060 Vesicle coat complex A 96.7 0.84 1.8E-05 58.3 28.1 130 271-410 44-173 (968)
17 PF13646 HEAT_2: HEAT repeats; 96.7 0.0096 2.1E-07 56.0 9.2 83 308-405 4-88 (88)
18 KOG2025 Chromosome condensatio 96.6 2.7 5.7E-05 53.5 30.9 126 269-406 92-219 (892)
19 KOG1824 TATA-binding protein-i 96.5 2.8 6.1E-05 54.7 31.4 538 204-769 454-1054(1233)
20 PRK13800 putative oxidoreducta 96.5 0.013 2.8E-07 78.5 12.2 120 263-407 622-741 (897)
21 KOG2023 Nuclear transport rece 96.4 4.5 9.7E-05 51.3 33.3 369 245-652 378-790 (885)
22 KOG0212 Uncharacterized conser 96.3 4 8.6E-05 50.9 29.8 415 208-656 27-494 (675)
23 PF10508 Proteasom_PSMB: Prote 96.3 0.47 1E-05 59.9 23.4 242 164-410 90-367 (503)
24 PF10508 Proteasom_PSMB: Prote 96.1 2.2 4.8E-05 53.9 28.2 131 263-394 120-257 (503)
25 KOG0414 Chromosome condensatio 96.1 8.9 0.00019 51.6 59.4 440 245-732 295-797 (1251)
26 KOG1242 Protein containing ada 96.0 1.5 3.3E-05 55.0 24.9 231 302-582 215-449 (569)
27 PF12348 CLASP_N: CLASP N term 95.9 0.086 1.9E-06 58.9 12.7 146 264-412 55-209 (228)
28 PLN03200 cellulose synthase-in 95.7 12 0.00026 54.1 34.5 372 315-752 416-812 (2102)
29 PF13646 HEAT_2: HEAT repeats; 95.5 0.045 9.8E-07 51.4 7.4 86 264-367 1-88 (88)
30 PF14500 MMS19_N: Dos2-interac 95.4 1.4 3.1E-05 50.9 20.8 231 63-308 6-255 (262)
31 KOG1949 Uncharacterized conser 95.3 1.1 2.4E-05 56.5 20.0 106 260-369 218-329 (1005)
32 KOG2171 Karyopherin (importin) 94.8 23 0.00051 47.8 68.1 312 62-411 86-420 (1075)
33 KOG2023 Nuclear transport rece 94.7 0.45 9.8E-06 59.6 14.2 182 167-382 105-293 (885)
34 COG5218 YCG1 Chromosome conden 94.6 2.7 5.9E-05 52.3 20.3 166 270-459 99-271 (885)
35 PF12460 MMS19_C: RNAPII trans 94.5 12 0.00026 46.2 26.6 299 69-379 56-402 (415)
36 KOG1061 Vesicle coat complex A 94.4 9.3 0.0002 49.5 25.0 374 262-675 13-416 (734)
37 KOG2011 Sister chromatid cohes 94.2 0.61 1.3E-05 62.0 15.0 128 304-442 287-421 (1048)
38 KOG0213 Splicing factor 3b, su 94.2 9.6 0.00021 48.9 23.9 298 63-409 560-954 (1172)
39 cd00020 ARM Armadillo/beta-cat 94.1 0.073 1.6E-06 52.2 5.1 106 263-368 8-117 (120)
40 PLN03200 cellulose synthase-in 94.1 31 0.00067 50.2 31.4 111 602-717 733-862 (2102)
41 COG5096 Vesicle coat complex, 94.1 8.3 0.00018 50.5 24.2 129 271-410 28-157 (757)
42 KOG1949 Uncharacterized conser 94.0 2 4.4E-05 54.3 17.9 188 265-462 177-377 (1005)
43 PF12719 Cnd3: Nuclear condens 94.0 0.58 1.3E-05 54.9 13.2 97 271-371 36-143 (298)
44 KOG0413 Uncharacterized conser 94.0 23 0.00049 46.9 27.0 137 274-412 337-504 (1529)
45 KOG1248 Uncharacterized conser 93.6 39 0.00084 46.0 49.9 145 121-266 282-433 (1176)
46 PF12755 Vac14_Fab1_bd: Vacuol 93.6 0.18 3.9E-06 49.6 6.7 66 341-407 26-94 (97)
47 PF12717 Cnd1: non-SMC mitotic 93.5 0.66 1.4E-05 50.3 11.6 84 247-333 10-93 (178)
48 COG5096 Vesicle coat complex, 93.2 9.4 0.0002 50.0 22.6 103 304-410 93-196 (757)
49 COG5240 SEC21 Vesicle coat com 93.0 11 0.00024 47.1 21.5 296 80-406 45-366 (898)
50 KOG2259 Uncharacterized conser 92.8 30 0.00065 44.3 25.0 135 628-772 393-529 (823)
51 KOG0414 Chromosome condensatio 92.7 2.3 4.9E-05 56.8 16.3 153 243-401 895-1056(1251)
52 COG5098 Chromosome condensatio 92.5 2.6 5.6E-05 53.3 15.6 110 251-361 335-464 (1128)
53 KOG2025 Chromosome condensatio 92.5 42 0.00092 43.4 27.5 56 141-197 75-131 (892)
54 PF02985 HEAT: HEAT repeat; I 92.4 0.19 4.1E-06 38.7 3.8 29 343-371 1-29 (31)
55 PF13513 HEAT_EZ: HEAT-like re 91.6 0.12 2.5E-06 44.8 2.2 52 317-368 1-54 (55)
56 PF12348 CLASP_N: CLASP N term 91.4 0.81 1.7E-05 51.1 9.2 148 262-411 7-162 (228)
57 KOG0915 Uncharacterized conser 91.0 24 0.00052 48.9 22.8 356 26-393 992-1457(1702)
58 PF12719 Cnd3: Nuclear condens 91.0 10 0.00022 44.6 18.2 125 284-410 5-144 (298)
59 PF13001 Ecm29: Proteasome sta 90.7 9.3 0.0002 48.4 18.6 129 253-384 361-499 (501)
60 PF10363 DUF2435: Protein of u 90.5 2 4.3E-05 42.0 9.6 87 302-392 2-89 (92)
61 KOG2259 Uncharacterized conser 90.4 0.43 9.3E-06 59.8 6.1 97 306-406 376-472 (823)
62 KOG1062 Vesicle coat complex A 89.9 15 0.00033 47.7 18.9 165 167-371 220-414 (866)
63 cd00020 ARM Armadillo/beta-cat 89.9 0.56 1.2E-05 45.9 5.5 99 309-407 13-118 (120)
64 KOG1058 Vesicle coat complex C 89.5 76 0.0016 41.5 24.2 144 256-411 14-165 (948)
65 COG5098 Chromosome condensatio 89.4 2.8 6E-05 53.1 11.8 134 245-411 282-417 (1128)
66 PF12755 Vac14_Fab1_bd: Vacuol 89.2 0.89 1.9E-05 44.7 6.2 84 279-362 3-88 (97)
67 PF12765 Cohesin_HEAT: HEAT re 88.7 0.54 1.2E-05 39.1 3.7 39 327-365 3-41 (42)
68 PF13513 HEAT_EZ: HEAT-like re 88.7 0.37 8E-06 41.7 2.9 52 356-407 1-55 (55)
69 KOG1078 Vesicle coat complex C 88.4 17 0.00037 47.2 17.8 259 62-365 251-526 (865)
70 COG5240 SEC21 Vesicle coat com 87.9 89 0.0019 39.7 27.9 52 623-674 318-369 (898)
71 TIGR02270 conserved hypothetic 87.7 3.6 7.8E-05 50.6 11.5 108 273-406 97-204 (410)
72 KOG1242 Protein containing ada 87.7 14 0.00029 47.0 16.3 216 186-410 172-402 (569)
73 PF01347 Vitellogenin_N: Lipop 87.5 11 0.00023 48.9 16.3 128 256-404 480-617 (618)
74 KOG1820 Microtubule-associated 86.8 7.2 0.00016 51.7 14.0 151 258-412 249-446 (815)
75 KOG2011 Sister chromatid cohes 85.6 13 0.00028 50.1 15.4 164 204-412 264-439 (1048)
76 KOG2956 CLIP-associating prote 85.2 7.8 0.00017 47.6 12.1 173 251-435 321-498 (516)
77 KOG1058 Vesicle coat complex C 85.0 23 0.0005 45.9 16.2 256 64-368 142-422 (948)
78 TIGR02270 conserved hypothetic 84.6 11 0.00024 46.6 13.4 135 244-409 42-176 (410)
79 PF12231 Rif1_N: Rap1-interact 82.3 1.3E+02 0.0028 36.8 26.9 321 66-411 3-354 (372)
80 COG1413 FOG: HEAT repeat [Ener 82.3 9.9 0.00022 45.0 11.6 136 248-409 94-242 (335)
81 PF05804 KAP: Kinesin-associat 81.5 62 0.0013 42.8 18.9 177 644-831 289-478 (708)
82 PF12074 DUF3554: Domain of un 80.5 78 0.0017 37.9 18.4 204 147-355 19-257 (339)
83 KOG1967 DNA repair/transcripti 80.5 8.2 0.00018 50.7 10.3 149 261-409 866-1024(1030)
84 COG1413 FOG: HEAT repeat [Ener 80.1 13 0.00028 44.0 11.6 90 263-370 44-134 (335)
85 KOG1078 Vesicle coat complex C 79.9 61 0.0013 42.5 17.4 221 204-440 223-516 (865)
86 smart00638 LPD_N Lipoprotein N 79.4 61 0.0013 41.7 18.1 144 254-407 389-543 (574)
87 KOG1060 Vesicle coat complex A 77.8 2.5E+02 0.0054 37.3 33.3 160 245-413 91-250 (968)
88 KOG0392 SNF2 family DNA-depend 76.6 13 0.00028 50.4 10.6 137 241-382 792-944 (1549)
89 PF14676 FANCI_S2: FANCI solen 76.4 3.6 7.9E-05 44.1 4.8 120 246-368 39-158 (158)
90 COG5181 HSH155 U2 snRNP splice 75.7 1.9E+02 0.0041 37.2 19.3 303 53-367 599-943 (975)
91 smart00638 LPD_N Lipoprotein N 74.1 2.7E+02 0.0058 35.9 23.8 95 256-362 475-569 (574)
92 KOG1943 Beta-tubulin folding c 73.5 3.6E+02 0.0078 37.1 30.9 179 205-413 515-709 (1133)
93 KOG0368 Acetyl-CoA carboxylase 72.9 1.8E+02 0.0038 41.1 19.2 247 107-371 768-1083(2196)
94 PF02985 HEAT: HEAT repeat; I 71.7 7.2 0.00016 30.0 4.2 29 382-410 2-30 (31)
95 KOG1059 Vesicle coat complex A 70.9 3.5E+02 0.0075 35.7 37.0 140 623-766 196-343 (877)
96 PF12765 Cohesin_HEAT: HEAT re 70.6 5.4 0.00012 33.3 3.5 39 366-404 3-42 (42)
97 KOG1967 DNA repair/transcripti 70.0 1.3E+02 0.0029 40.3 16.9 128 238-366 880-1019(1030)
98 PF04826 Arm_2: Armadillo-like 69.2 1.9E+02 0.004 33.7 16.8 145 217-363 88-254 (254)
99 KOG1240 Protein kinase contain 68.2 41 0.00089 45.8 12.2 168 237-405 435-642 (1431)
100 PF14500 MMS19_N: Dos2-interac 68.0 2.4E+02 0.0053 32.9 19.3 163 345-544 2-169 (262)
101 KOG0166 Karyopherin (importin) 67.7 14 0.0003 46.5 7.7 141 262-406 152-305 (514)
102 KOG0413 Uncharacterized conser 67.2 63 0.0014 43.1 13.2 131 275-410 944-1074(1529)
103 COG5537 IRR1 Cohesin [Cell div 66.7 8.2 0.00018 48.6 5.4 104 302-409 273-386 (740)
104 KOG1243 Protein kinase [Genera 66.5 19 0.00041 46.4 8.6 108 301-408 327-436 (690)
105 PF14911 MMS22L_C: S-phase gen 66.3 62 0.0013 39.5 12.5 183 96-287 139-370 (373)
106 COG5181 HSH155 U2 snRNP splice 66.2 3.1E+02 0.0067 35.5 18.3 258 147-410 396-718 (975)
107 PF10363 DUF2435: Protein of u 66.0 21 0.00045 35.0 7.0 84 268-357 9-92 (92)
108 PF05004 IFRD: Interferon-rela 64.7 1.9E+02 0.0042 34.5 16.2 67 648-714 46-114 (309)
109 KOG1059 Vesicle coat complex A 63.7 79 0.0017 41.2 13.0 164 244-408 163-364 (877)
110 PF08167 RIX1: rRNA processing 63.3 50 0.0011 35.6 10.1 138 602-771 19-163 (165)
111 PF13251 DUF4042: Domain of un 63.1 78 0.0017 34.9 11.5 130 278-410 2-175 (182)
112 PF01347 Vitellogenin_N: Lipop 61.4 97 0.0021 40.1 14.1 219 151-406 348-586 (618)
113 COG5218 YCG1 Chromosome conden 61.1 4.7E+02 0.01 33.8 25.7 216 101-372 47-267 (885)
114 KOG0211 Protein phosphatase 2A 60.7 28 0.0006 46.1 8.8 136 274-412 210-348 (759)
115 COG5537 IRR1 Cohesin [Cell div 60.4 51 0.0011 42.0 10.4 130 272-412 285-428 (740)
116 PF03378 CAS_CSE1: CAS/CSE pro 60.3 1.1E+02 0.0024 38.2 13.7 191 74-293 44-255 (435)
117 PF05327 RRN3: RNA polymerase 60.2 84 0.0018 40.6 13.0 189 102-324 31-222 (563)
118 KOG2051 Nonsense-mediated mRNA 59.5 52 0.0011 44.3 10.8 91 245-336 481-578 (1128)
119 PF12530 DUF3730: Protein of u 56.0 3.6E+02 0.0077 30.8 16.9 129 625-756 55-190 (234)
120 PF12830 Nipped-B_C: Sister ch 54.5 51 0.0011 36.3 8.4 70 341-411 7-76 (187)
121 PF05918 API5: Apoptosis inhib 54.1 1.1E+02 0.0025 39.2 12.4 122 603-730 19-140 (556)
122 KOG2213 Apoptosis inhibitor 5/ 54.0 5.1E+02 0.011 32.0 18.1 228 300-568 22-277 (460)
123 PF11864 DUF3384: Domain of un 53.3 5.6E+02 0.012 32.3 22.3 166 116-291 147-330 (464)
124 KOG4413 26S proteasome regulat 53.3 1E+02 0.0023 36.6 10.8 54 244-297 190-250 (524)
125 KOG0211 Protein phosphatase 2A 52.3 3.4E+02 0.0074 36.4 16.6 139 261-401 275-419 (759)
126 KOG0212 Uncharacterized conser 51.4 6.6E+02 0.014 32.5 35.5 283 118-411 12-326 (675)
127 PF05918 API5: Apoptosis inhib 50.5 1.8E+02 0.004 37.4 13.3 81 274-361 34-114 (556)
128 KOG1992 Nuclear export recepto 50.5 7.9E+02 0.017 33.1 18.9 117 113-234 603-734 (960)
129 PF09465 LBR_tudor: Lamin-B re 49.8 9.1 0.0002 33.9 1.3 13 1380-1392 8-20 (55)
130 PF05004 IFRD: Interferon-rela 48.8 2.3E+02 0.0049 33.9 13.2 150 263-412 87-260 (309)
131 PF13251 DUF4042: Domain of un 48.8 1.2E+02 0.0026 33.4 10.1 98 271-371 49-174 (182)
132 KOG2213 Apoptosis inhibitor 5/ 48.3 6.2E+02 0.014 31.3 23.5 252 274-544 36-334 (460)
133 PF05804 KAP: Kinesin-associat 46.0 8.9E+02 0.019 32.4 21.3 169 542-714 461-648 (708)
134 KOG0166 Karyopherin (importin) 45.3 1.6E+02 0.0035 37.5 11.5 168 267-441 71-251 (514)
135 KOG1077 Vesicle coat complex A 44.4 96 0.0021 40.3 9.3 100 256-361 323-423 (938)
136 KOG2062 26S proteasome regulat 42.4 1.2E+02 0.0026 39.8 9.8 122 278-410 502-654 (929)
137 PF04118 Dopey_N: Dopey, N-ter 42.3 2E+02 0.0044 34.3 11.4 107 251-368 131-251 (307)
138 PF08569 Mo25: Mo25-like; Int 42.2 7.1E+02 0.015 30.2 19.2 88 266-354 213-313 (335)
139 PF14664 RICTOR_N: Rapamycin-i 42.0 56 0.0012 40.0 6.9 112 263-376 26-142 (371)
140 KOG2956 CLIP-associating prote 40.9 6.2E+02 0.013 32.0 15.1 163 164-331 301-476 (516)
141 KOG2933 Uncharacterized conser 40.6 1.7E+02 0.0037 34.9 10.0 162 244-410 107-278 (334)
142 KOG2160 Armadillo/beta-catenin 40.0 3.4E+02 0.0075 32.9 12.6 97 270-371 132-240 (342)
143 PF12074 DUF3554: Domain of un 39.3 1.5E+02 0.0033 35.5 10.0 87 319-409 3-90 (339)
144 PF04826 Arm_2: Armadillo-like 38.6 1.5E+02 0.0032 34.4 9.3 135 273-407 24-161 (254)
145 cd00256 VATPase_H VATPase_H, r 38.0 9.2E+02 0.02 30.3 20.9 64 67-134 65-132 (429)
146 COG5064 SRP1 Karyopherin (impo 36.5 2.6E+02 0.0057 33.7 10.7 137 264-407 73-251 (526)
147 KOG2038 CAATT-binding transcri 35.3 1.3E+03 0.027 31.1 21.7 55 313-369 314-368 (988)
148 PF12530 DUF3730: Protein of u 35.1 7.3E+02 0.016 28.3 16.7 70 249-325 108-178 (234)
149 PF08506 Cse1: Cse1; InterPro 34.8 6.7E+02 0.015 30.8 14.5 223 509-747 102-369 (370)
150 KOG4413 26S proteasome regulat 34.2 2.7E+02 0.0059 33.3 10.3 129 275-410 53-201 (524)
151 KOG1241 Karyopherin (importin) 32.9 1.4E+03 0.03 30.8 28.8 157 254-411 355-532 (859)
152 KOG1517 Guanine nucleotide bin 32.6 2.8E+02 0.006 38.0 11.0 137 256-412 597-735 (1387)
153 cd03568 VHS_STAM VHS domain fa 32.0 1.2E+02 0.0027 32.0 6.8 71 603-677 36-113 (144)
154 KOG0168 Putative ubiquitin fus 31.8 7.1E+02 0.015 33.7 14.2 40 51-90 329-369 (1051)
155 KOG2160 Armadillo/beta-catenin 31.8 3.6E+02 0.0077 32.8 11.1 145 264-411 85-242 (342)
156 COG5219 Uncharacterized conser 31.7 3.2E+02 0.007 36.9 11.2 194 98-328 1036-1263(1525)
157 PF00514 Arm: Armadillo/beta-c 31.5 75 0.0016 25.7 4.0 29 342-370 12-40 (41)
158 KOG2153 Protein involved in th 30.8 1.3E+02 0.0028 38.9 7.5 63 320-382 302-365 (704)
159 COG5116 RPN2 26S proteasome re 30.4 88 0.0019 39.7 5.9 62 313-377 526-587 (926)
160 cd03561 VHS VHS domain family; 30.1 4.3E+02 0.0094 27.3 10.3 81 329-411 26-114 (133)
161 KOG4224 Armadillo repeat prote 29.5 8.2E+02 0.018 30.0 13.2 146 261-409 207-363 (550)
162 PF11707 Npa1: Ribosome 60S bi 29.3 2.6E+02 0.0056 33.6 9.7 128 258-409 52-214 (330)
163 PF11919 DUF3437: Domain of un 28.8 1.3E+02 0.0029 29.4 5.8 57 355-412 2-61 (90)
164 PF08324 PUL: PUL domain; Int 27.7 3E+02 0.0064 31.7 9.6 97 274-370 122-230 (268)
165 PF12830 Nipped-B_C: Sister ch 27.4 4.1E+02 0.009 29.2 10.2 66 303-373 8-76 (187)
166 PF14664 RICTOR_N: Rapamycin-i 27.1 1.1E+03 0.023 29.0 14.5 195 204-410 44-270 (371)
167 KOG1820 Microtubule-associated 26.1 1.3E+03 0.028 31.5 15.8 57 314-370 382-442 (815)
168 KOG0946 ER-Golgi vesicle-tethe 25.5 3.4E+02 0.0074 36.2 9.9 91 243-373 107-197 (970)
169 KOG1243 Protein kinase [Genera 25.5 5.2E+02 0.011 34.1 11.6 154 255-411 361-517 (690)
170 PF14911 MMS22L_C: S-phase gen 25.2 6.8E+02 0.015 30.9 12.1 123 18-160 223-347 (373)
171 COG5215 KAP95 Karyopherin (imp 25.1 1.6E+03 0.035 29.2 20.3 316 6-369 384-761 (858)
172 cd06561 AlkD_like A new struct 25.0 2.8E+02 0.0061 30.0 8.4 76 318-401 121-196 (197)
173 PF08767 CRM1_C: CRM1 C termin 24.9 4.9E+02 0.011 31.2 10.9 126 167-292 43-195 (319)
174 KOG2050 Puf family RNA-binding 24.7 1.3E+03 0.028 30.1 14.4 123 399-550 246-376 (652)
175 KOG1293 Proteins containing ar 24.5 4.4E+02 0.0096 34.4 10.6 173 267-449 336-524 (678)
176 KOG3723 PH domain protein Melt 23.5 1.7E+03 0.037 28.9 16.4 49 245-294 182-230 (851)
177 KOG0168 Putative ubiquitin fus 23.3 1.5E+03 0.033 30.9 15.0 184 593-779 243-441 (1051)
178 KOG0162 Myosin class I heavy c 22.6 6.5E+02 0.014 33.3 11.4 219 163-413 455-711 (1106)
179 KOG1991 Nuclear transport rece 22.2 2.2E+03 0.048 29.7 27.7 320 62-387 133-592 (1010)
180 PF00514 Arm: Armadillo/beta-c 22.1 90 0.0019 25.3 2.8 30 261-290 11-40 (41)
181 PF14228 MOR2-PAG1_mid: Cell m 21.6 2.5E+03 0.053 30.0 28.0 125 278-410 486-611 (1120)
182 PF08569 Mo25: Mo25-like; Int 21.5 1.5E+03 0.032 27.5 15.8 166 229-410 49-239 (335)
183 KOG0915 Uncharacterized conser 21.0 2.8E+03 0.06 30.4 39.5 139 274-412 1010-1163(1702)
184 PF08713 DNA_alkylation: DNA a 20.7 1.1E+03 0.023 25.9 11.9 121 203-335 65-187 (213)
185 PF12612 TFCD_C: Tubulin foldi 20.4 3.7E+02 0.008 29.6 8.1 113 69-199 20-138 (193)
186 PF06685 DUF1186: Protein of u 20.3 1.3E+03 0.028 26.9 12.6 100 244-355 100-202 (249)
No 1
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=100.00 E-value=1.2e-137 Score=1318.96 Aligned_cols=1064 Identities=30% Similarity=0.467 Sum_probs=902.7
Q ss_pred HHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCC
Q 000609 10 KEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAP 89 (1393)
Q Consensus 10 ~~~g~kL~~~~~s~~~LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~AP 89 (1393)
..-|-+....|++++||++||++|++||++++|++ .+.+++.|++.+|+++.||+|+|+|||+|||||++||||||||
T Consensus 6 ~~~g~~~~~~~~s~~ell~rLk~l~~~l~~~~qd~--~~~~~~~pl~~~l~~~~~L~h~d~dvrllvacCvseilRi~aP 83 (1266)
T KOG1525|consen 6 YPPGCLTSLNPISKDELLKRLKKLANCLASLDQDN--LDLASLLPLADHLIKDFLLKHKDKDVRLLVACCVSEILRIYAP 83 (1266)
T ss_pred cCCCCccccCcccHHHHHHHHHHHHHHHhhcccCc--hhHHHHHHHHHHHhhHHHhcCCCcChhHHHHHHHHHHHHHhCC
Confidence 34456666778999999999999999999999996 6999999999999999999999999999999999999999999
Q ss_pred CCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHH
Q 000609 90 EAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLS 169 (1393)
Q Consensus 90 daPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~v~~ 169 (1393)
||||++.||+|||++|++||.||+|+.+|||.||+||||+|++||.|++|.|.+|++++.+||++||++++.+|+.+|.+
T Consensus 84 eaPy~~~~lkdIf~~~~~q~~gL~d~~sp~f~r~~~lletl~~~k~~l~~~l~d~~e~~~~~f~~f~d~~~~~~~~~v~~ 163 (1266)
T KOG1525|consen 84 EAPYTDEQLKDIFQLILSQFSGLGDVESPYFKRYFYLLETLAKVKFCLLMLLEDCQELVHELFRTFFDLARKGHPKKVFN 163 (1266)
T ss_pred CCCCcHHHHHHHHHHHHHHHhhccCCCCcchhhHHHHHHHHHHhHHHheeeccchHHHHHHHHHHHHHHHhccccHHHHH
Confidence 99999999999999999999999999999999999999999999955555555599999999999999999999999999
Q ss_pred HHHHHHHHHhcccccccHHHHHHHHHhhcCCCc---HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCC-CCCCCchhH
Q 000609 170 SMQTIMIVLLEESEDIQEDLLVILLSALGRNKN---DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDS-RPGHSHIDY 245 (1393)
Q Consensus 170 ~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~---~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~-~~~~~~~~~ 245 (1393)
|.+||+.+|.|.+.||.++|++||.+|..++. ..|+.||..+|+.|++.+++.+++||++.+.++. ..+....++
T Consensus 164 -~~~i~~~li~e~d~v~~e~L~~ll~~lv~~~~~~~~~a~~la~~li~~~a~~~~~~i~~f~~~~~~~~~s~~~~~~~~~ 242 (1266)
T KOG1525|consen 164 -MLDIAIMLITEEDTVQSELLDVLLENLVKPGRDTIKEADKLASDLIERCADNLEDTIANFLNSCLTEYKSRQSSLKIKY 242 (1266)
T ss_pred -HHHHHHHHHHhhccchHHHHHHHHHHhccCCCCccHHHHHHHHHHHHHhhhhhchhHHHHHHHHHhhccccccchhhHH
Confidence 99999999999999999999999999976543 3999999999999999999999999999888764 455667789
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000609 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1393)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1393)
|++|++||+++|++|++|||||++||++|++.+|+.||.++|+||+.+++.++.+|+++|.+|||||+|++++||++||+
T Consensus 243 he~i~~L~~~~p~ll~~vip~l~~eL~se~~~~Rl~a~~lvg~~~~~~~~~l~~~~~~~~~~fl~r~~D~~~~vR~~~v~ 322 (1266)
T KOG1525|consen 243 HELILELWRIAPQLLLAVIPQLEFELLSEQEEVRLKAVKLVGRMFSDKDSQLSETYDDLWSAFLGRFNDISVEVRMECVE 322 (1266)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhcchhhhcccchHHHHHHHHHhccCChhhhhhHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000609 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1393)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La 405 (1393)
++++||.+||++..+..+..+++.|+.|+|++||..+|.++|+++.+.+..+|. +|+.++||+||||+.||++||++|+
T Consensus 323 ~~~~~l~~~~~~~~~~~~~~~l~~~~~D~~~rir~~v~i~~~~v~~~~l~~~~~-ll~~~~eR~rDKk~~VR~~Am~~La 401 (1266)
T KOG1525|consen 323 SIKQCLLNNPSIAKASTILLALRERDLDEDVRVRTQVVIVACDVMKFKLVYIPL-LLKLVAERLRDKKIKVRKQAMNGLA 401 (1266)
T ss_pred HhHHHHhcCchhhhHHHHHHHHHhhcCChhhhheeeEEEEEeehhHhhhhhhHH-HHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 999999999998888899999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHH-hhhhccCCCcchhccccchHHHhhhhcccCCCc-hhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 000609 406 DIFRG-CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGS-DTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKAL 483 (1393)
Q Consensus 406 ~lY~~-~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~-~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~kal 483 (1393)
++|+. ||..+++|...+..|.|||++||++||.|+.+. .+||++|+++|+|+++++++|+++|+++|++||..+.++|
T Consensus 402 qlYk~~~~~~~~~~k~~t~~~swIp~kLL~~~y~~~~~~r~~vE~il~~~L~P~~l~~q~Rmk~l~~~l~~~D~~a~kaf 481 (1266)
T KOG1525|consen 402 QLYKNVYCLRSAGGKEITPPFSWIPDKLLHLYYENDLDDRLLVERILAEYLVPYPLSTQERMKHLYQLLAGLDLNAHKAF 481 (1266)
T ss_pred HHHHHHHHhhccCcccccccccccchhHHhhHhhccccHHHHHHHHHHHhhCCCCCCHHHHHHHHHHHHhcccHhhhhHH
Confidence 99996 565667777888999999999999999998764 4999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhh--ccHHHHHHHHHHhcC
Q 000609 484 EKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQL--KDANVWKILMNLLDS 561 (1393)
Q Consensus 484 ~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~kl--nD~ri~klLk~~id~ 561 (1393)
..|+++|+++|.+++.||.+++..+.++ ..+++...|..++..||||.......++|++. .+..+...+..+..+
T Consensus 482 ~~i~~~q~~ls~~vr~~I~~~k~~~~d~---~~k~i~~~i~~i~~~lpD~~s~~~~~~~f~~~L~~~~~~~s~~~~L~~~ 558 (1266)
T KOG1525|consen 482 NEILKRQSRLSEEVRDYITLSKTPNTDD---SMKKIFSKIVKISENLPDPSSRSYDSMKFADVLETLAKVRSCLVSLDSP 558 (1266)
T ss_pred HHHHHHHHHHHHHHHHHhccccCCCccH---hHHHHHHHHHHHHHhcCCchhhhhHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 9999999999999999999988765443 77788888999999999999999999999763 667888899999999
Q ss_pred CCCHHHHHHHHHHHHHHhcC----CCChHHHHHHHHHhhhccccch-hHHHHHHHHHHhhc-------ccch--hhhHHH
Q 000609 562 NTSFDQAFTGRDDLLKILGA----KHRLYDFLSTLSMKCSYLLFNK-EHVKEILLEVAAQK-------SSAN--AQFMQS 627 (1393)
Q Consensus 562 ~t~~~t~~~a~~ELlkrL~~----~~~~~e~l~~Ll~R~S~li~Nk-s~V~~LL~~~~~~~-------~~~~--~~~~~~ 627 (1393)
..+|.++.-.+++++.+++. +..+..+.+.|..|..++.+.. +.+..+++...... ..++ ......
T Consensus 559 ~~~C~~l~~~v~~~l~e~~~~~~s~nlF~~~~~~li~~I~~v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl 638 (1266)
T KOG1525|consen 559 SISCKELLITVKEILFELGRKKQSKNLFSSMEKELIERIAEVSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKL 638 (1266)
T ss_pred chhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHhcchhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhH
Confidence 99998876666766666654 3447788889999999987777 77777776543211 1111 123455
Q ss_pred HHHHHHHHHhhCCcCcccc--HHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHH
Q 000609 628 CMDILGILARFSPLLLGGT--EEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKY 705 (1393)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~--~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~ 705 (1393)
...||.++|..+|.+|... +..++..+.+..+...+.+|+.+...|+......+...+.+...+.+++..|+|.|||+
T Consensus 639 ~~~lle~ls~~~~~~~~~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~ 718 (1266)
T KOG1525|consen 639 KKYLLEALSSIHPDLFKYSESVLSILEKLFSEPDVVAPVVLKKLESQGKKIEVEAPSILSTLSRVLAKKELSGTPEQAKL 718 (1266)
T ss_pred HHHHHHHhhhcCcchhhhhHHHHHHHHHhccchhhhhHHHHHHHHhccccccccchhhhcchhhhhhHHHHcCCcchhHH
Confidence 7889999999999988876 46666666666666778899999888855555555666788999999999999999999
Q ss_pred HHHHHHhhcCCCccchHHHHHHHHHHhhhhc-----CCCchHHHHHHHHHhhcccccccc-hHHHHHHHHHhhhcccccc
Q 000609 706 AVHALAAITKDDGLKSLSVLYKRLVDMLEEK-----THLPAVLQSLGCIAQTAMPVFETR-ESEIEEFIKSKILRCSNKI 779 (1393)
Q Consensus 706 Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~-----~~l~t~L~sL~~Ia~~ap~vfe~~-~~eI~~fiik~IL~~~~~~ 779 (1393)
|++|+.++...+.. .+.+.+..+.+.+... .++.+.+.+||+|+.+.|..|.+. ...+..||+|+++..++.+
T Consensus 719 ~~~~i~~~~~s~~~-~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~~p~~~~~~~k~~~~~~IvK~~~~~~~~~ 797 (1266)
T KOG1525|consen 719 AKRCIKAILQSKFC-KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLDLPSQFLDPLKSDVAKFIVKKVLSNDDSP 797 (1266)
T ss_pred HhhhhhHHhhhhhh-HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhhccHhhcchhhhhhHHHHHHHHhcCCCcc
Confidence 99999988876422 3445666677766433 599999999999999999666654 7889999999998888888
Q ss_pred CCC-CCCCCCC---C-hhhHHHHHHHHHHHHHhhcCCCcccc--ccchHHHHHHHHHhh-ccCccccCCCCChhHHhhhh
Q 000609 780 RND-TKACWDD---R-SELCLLKIYGIKTLVKSYLPVKDAHI--RPGIDDLLGILKSML-SYGEMSEDIESSSVDKAHLR 851 (1393)
Q Consensus 780 ~~~-~~~~W~d---~-s~~~~aKi~aLK~lvn~ll~~~~~~~--~~~i~~ll~lL~~il-~~GEl~~~~~tp~~~ksrLR 851 (1393)
++. ....|.+ . +..+.+|+++++++++||++...+.- +-.+...+.+|..++ +.|+...+..+|..+++++|
T Consensus 798 ~e~~~~~~~~P~~~~~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~~~~~L~~ll~~~gdl~~~~~~~~~~~sklr 877 (1266)
T KOG1525|consen 798 GEKNKSKEWLPSDKLLSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPRSFRLLSKLLNSEGDLTEQNRDPKSDQSKLR 877 (1266)
T ss_pred ccccCccccCCcccccchhhhhHHHHHHHhhhhccccccCcchhhhcchhHHHHHHHHHhhcCCCCcccCCcchhhhhhh
Confidence 765 5667865 2 55688899999999999999876421 111112566777755 79999999889999999999
Q ss_pred HHHHHHHHHhhhh--cCCCCCHHHHHHHhhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHH
Q 000609 852 LASAKAVLRLSRQ--WDHKIPVDVFHLTLRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEK 929 (1393)
Q Consensus 852 LaAa~~lLKLar~--~d~~i~~~~f~l~~~~~qD~~~~VR~~Fl~KL~k~L~~~~L~~rY~~lflla~~a~ep~~~~e~k 929 (1393)
+.|+.+++|||.. +..+++++.|..+.+.++|++++||..|+.|+++++....+|.-|++.|.+++.+ + ..+..
T Consensus 878 ~~a~~~ilKl~~~~~~~e~~~~~~~~~~~~~i~de~~~vR~~f~~kl~k~l~~i~lp~~~~a~~~l~~~d--~--~~~~~ 953 (1266)
T KOG1525|consen 878 LTAKITILKLASEKSYHEFINAEQYEKLILLISDECLQVRLVFLLKLHKGLSRIKLPLEYMAKFKLCAPD--V--SKELL 953 (1266)
T ss_pred hhhhheeeecccccchhccCCHHHHHHHHHHhcCCchhHHHHHHHHccccccccccchhhhhHHHHhccc--h--hhhhh
Confidence 9999999999976 5788999999888888999999999999999999999999999999999885422 1 11111
Q ss_pred ---HHHHHHHHHHHHHHHhhhhhccccccccCcchhhhHHHHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccC
Q 000609 930 ---QNLADIIQMHHQMKARQISVQSDANSFATYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKD 1006 (1393)
Q Consensus 930 ---~~l~~~i~~~~~~r~r~~s~~s~~~~~~~~pEy~LprLIhlLAHH~~pd~~e~~d~~~~~~~~~~L~F~L~~L~~~~ 1006 (1393)
....+-...+++.+.....+.++.. ....|||+.+|.+|++||| |++...+++..|-.+..++||.++.+...+
T Consensus 954 ~~~~~~~t~~~~~~r~~t~~e~~~s~~~-~~~~~e~V~~~~~~~la~d--~~~~~~edv~~l~~~ke~~~~vl~~l~~~~ 1030 (1266)
T KOG1525|consen 954 ANKREEETKNSASRREQTKFERATSDGT-LAHLPEYVGSYVIHLLAHD--PDFVKAEDVDSLSDLKECLWFVLEDLDEEN 1030 (1266)
T ss_pred hHHHHhhhhcchhhhhhhhhhhccCchh-hhhhhHHhhhhhhhhhccC--ccccccchhhhHHHHHHhHHHHHhhhhhhh
Confidence 1111111222222222232333221 5688999999999999999 999998899999999999999999995421
Q ss_pred ccccccccccccH--HHHHHHHHHhhcccccccc---ccccchHHHHHhHHHHHHHHhc-cCCCCcccccccCCCccccc
Q 000609 1007 EDVKSEASNKESI--SVIISIFRSIKCSEDIVDA---AKSKNSHAICDLGLSITKRLSR-MEDNSQGVFSSVSLPSTLYK 1080 (1393)
Q Consensus 1007 ~~~~~~~~~~eNi--SlLy~la~rIKq~rDa~d~---~~S~nly~l~DLAq~IIk~~~~-k~w~lqsyPGkV~LP~~lF~ 1080 (1393)
+|+ .+.-.+.+-+++.+|...+ ..+..||+|||+|+.|+..... .+|...+|||+.+||..+|+
T Consensus 1031 ----------~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~~~~lp~~~~~ 1100 (1266)
T KOG1525|consen 1031 ----------ENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPGKLNLPALSFT 1100 (1266)
T ss_pred ----------ccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCccccCchhhhC
Confidence 232 2333444556667787643 3456799999999999998775 67999999999999999999
Q ss_pred CCCCCCcccccccccccccccch
Q 000609 1081 PYEKKEGDDSLASERQTWLADES 1103 (1393)
Q Consensus 1081 p~~s~~~~~a~~~~~k~yLpd~~ 1103 (1393)
+..+. + -...++|+|+++
T Consensus 1101 ~~~~k----n-~~~~k~~i~e~~ 1118 (1266)
T KOG1525|consen 1101 SPKDK----N-FINNKIYIPEET 1118 (1266)
T ss_pred Ccchh----h-hccccccCCchh
Confidence 97752 2 235899999993
No 2
>KOG1525 consensus Sister chromatid cohesion complex Cohesin, subunit PDS5 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.69 E-value=2.8e-13 Score=177.00 Aligned_cols=487 Identities=17% Similarity=0.144 Sum_probs=253.2
Q ss_pred CcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCcc
Q 000609 640 PLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGL 719 (1393)
Q Consensus 640 P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~~~ 719 (1393)
+.+|..-+..|++.|.+ ..+.++..++..++.............++..|-++..+..||...+|..+..+...
T Consensus 583 ~nlF~~~~~~li~~I~~-------v~~di~~s~~~~ik~~~~~i~~~~~~l~e~v~~~~a~kl~~~lle~ls~~~~~~~~ 655 (1266)
T KOG1525|consen 583 KNLFSSMEKELIERIAE-------VSLDILESISALIKLNNIVIAEVSLLLLEGVLSEKALKLKKYLLEALSSIHPDLFK 655 (1266)
T ss_pred cchHHHHHHHHHHHhcc-------hhhhhHHHHHHHHhhhhhhHHHHHhhcccccchhhHHhHHHHHHHHhhhcCcchhh
Confidence 55888888888888775 34555555544444333323334455566788888889999999999977765432
Q ss_pred chHHHHHHHHHHhhh--hcCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhhhccccccCCCCCCCCCCChhhHHHH
Q 000609 720 KSLSVLYKRLVDMLE--EKTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLK 797 (1393)
Q Consensus 720 ~~~~~L~~~L~~~L~--~~~~l~t~L~sL~~Ia~~ap~vfe~~~~eI~~fiik~IL~~~~~~~~~~~~~W~d~s~~~~aK 797 (1393)
.+..+..|+..+. .....|.+|+.+.+.+ +.+-......+..++-.......+...+..+..|..-...++.|
T Consensus 656 --~s~~v~~i~~~~~~~~~~~~~~vLk~~~~~~---~~~~~~~~si~~~~~~~~~~~~~~g~~~q~k~~~~~i~~~~~s~ 730 (1266)
T KOG1525|consen 656 --YSESVLSILEKLFSEPDVVAPVVLKKLESQG---KKIEVEAPSILSTLSRVLAKKELSGTPEQAKLAKRCIKAILQSK 730 (1266)
T ss_pred --hhHHHHHHHHHhccchhhhhHHHHHHHHhcc---ccccccchhhhcchhhhhhHHHHcCCcchhHHHhhhhhHHhhhh
Confidence 1223444444432 2237888999999888 33333333233333221111111111122333443333333333
Q ss_pred HHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCccccCCCCChhHHhhhhHHHHHHHHHhhhhcCCCCCHHHHHHH
Q 000609 798 IYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQWDHKIPVDVFHLT 877 (1393)
Q Consensus 798 i~aLK~lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl~~~~~tp~~~ksrLRLaAa~~lLKLar~~d~~i~~~~f~l~ 877 (1393)
.. .+.+......+..........-.+...++.-|++... .|++.+..++..++..|+|.. .+....+.+.+.-.
T Consensus 731 ~~---~l~q~~~~~~d~l~~~~~~~~e~~~~~i~~lgei~~~--~p~~~~~~~k~~~~~~IvK~~-~~~~~~~~e~~~~~ 804 (1266)
T KOG1525|consen 731 FC---KLKQTFEEIKDNLLEDLTSELEGLRTPIVTLGEIFLD--LPSQFLDPLKSDVAKFIVKKV-LSNDDSPGEKNKSK 804 (1266)
T ss_pred hh---HHHHHhhhhHHHHhhhhhhhhhccccchhhhhhHhhh--ccHhhcchhhhhhHHHHHHHH-hcCCCccccccCcc
Confidence 33 2233333333321111111222333334455777654 458899999999999999988 56555555555222
Q ss_pred hhcccCCchhHHHHHHHHHHHhHhcCCCchhhHHHHHhhhccCCCCchHHHHHHHHHHHHHHHHHHHhhhhhcccccccc
Q 000609 878 LRTPEISFPQAKKLFLSKVHQYVKDRLLDAKYACAFLFGITESKSPEFEEEKQNLADIIQMHHQMKARQISVQSDANSFA 957 (1393)
Q Consensus 878 ~~~~qD~~~~VR~~Fl~KL~k~L~~~~L~~rY~~lflla~~a~ep~~~~e~k~~l~~~i~~~~~~r~r~~s~~s~~~~~~ 957 (1393)
.++..+..
T Consensus 805 ~~~P~~~~------------------------------------------------------------------------ 812 (1266)
T KOG1525|consen 805 EWLPSDKL------------------------------------------------------------------------ 812 (1266)
T ss_pred ccCCcccc------------------------------------------------------------------------
Confidence 22221111
Q ss_pred CcchhhhHHHHHHhcCCCCCCccchhcHHHHHHHHHHHHHHHHHhhccCcccccccc--cccc-------HHHHHHHHHH
Q 000609 958 TYPEYIIPYLVHTFAHHSCPDIDECKDVKAFELVYCRLYFIVSMLIHKDEDVKSEAS--NKES-------ISVIISIFRS 1028 (1393)
Q Consensus 958 ~~pEy~LprLIhlLAHH~~pd~~e~~d~~~~~~~~~~L~F~L~~L~~~~~~~~~~~~--~~eN-------iSlLy~la~r 1028 (1393)
.+|+++++++-+-|.||..++.+...+..++...+ ..-+|..+++.+++.+...- ..+= ..-+.++ ..
T Consensus 813 ~~p~~~~k~~a~~L~~~~l~~~~~d~~~~e~s~~~--~~~~L~~ll~~~gdl~~~~~~~~~~~sklr~~a~~~ilKl-~~ 889 (1266)
T KOG1525|consen 813 LSPNTSLKVLAIKLLVRRLLDLEEDKEKDELSTPR--SFRLLSKLLNSEGDLTEQNRDPKSDQSKLRLTAKITILKL-AS 889 (1266)
T ss_pred cchhhhhHHHHHHHhhhhccccccCcchhhhcchh--HHHHHHHHHhhcCCCCcccCCcchhhhhhhhhhhheeeec-cc
Confidence 12334444444444444333333322222222211 11122222222111111100 0000 0001111 12
Q ss_pred hhccccccccccccchHHHHHhHHHHHH-------HHhccCCCCcccccccCCCcccccCCCCCCccccccccccccccc
Q 000609 1029 IKCSEDIVDAAKSKNSHAICDLGLSITK-------RLSRMEDNSQGVFSSVSLPSTLYKPYEKKEGDDSLASERQTWLAD 1101 (1393)
Q Consensus 1029 IKq~rDa~d~~~S~nly~l~DLAq~IIk-------~~~~k~w~lqsyPGkV~LP~~lF~p~~s~~~~~a~~~~~k~yLpd 1101 (1393)
++.+.+.. +-...+.+++.+.- .++.+ ++.+--++.||..+..+ .+-|.|+
T Consensus 890 ~~~~~e~~------~~~~~~~~~~~i~de~~~vR~~f~~k---l~k~l~~i~lp~~~~a~-------------~~l~~~d 947 (1266)
T KOG1525|consen 890 EKSYHEFI------NAEQYEKLILLISDECLQVRLVFLLK---LHKGLSRIKLPLEYMAK-------------FKLCAPD 947 (1266)
T ss_pred ccchhccC------CHHHHHHHHHHhcCCchhHHHHHHHH---ccccccccccchhhhhH-------------HHHhccc
Confidence 33333333 33444444444433 22222 22222336666643222 4455666
Q ss_pred chhhhhhhhhcccccccccc--cccccccccccccCCCCcchHHHHHHHhhccccCcccccccCChhhhccCCChhHHHh
Q 000609 1102 ESVLTHFESLKLETHEVVGS--EIARHEALDDLEKDGNEVPLGKMIQQLKSQGAKGGKAKKKKSSPAEVKGTENDVDILQ 1179 (1393)
Q Consensus 1102 ~~~l~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1179 (1393)
.....+.......+.+.++. +.....+.+ +|- +.+..++.-++..-..++.++.+++| |||.|.
T Consensus 948 ~~~~~~~~~~~~~t~~~~~~r~~t~~e~~~s----~~~----~~~~~e~V~~~~~~~la~d~~~~~~e------dv~~l~ 1013 (1266)
T KOG1525|consen 948 VSKELLANKREEETKNSASRREQTKFERATS----DGT----LAHLPEYVGSYVIHLLAHDPDFVKAE------DVDSLS 1013 (1266)
T ss_pred hhhhhhhHHHHhhhhcchhhhhhhhhhhccC----chh----hhhhhHHhhhhhhhhhccCccccccc------hhhhHH
Confidence 55555555555555555533 222222222 222 78888999999998999999998887 999999
Q ss_pred hhHHhccccccCccccccCCCCCCCCccccccchhhHHHhhccCCCccc-cccCccccccccCCCCCCCCCCCcccc
Q 000609 1180 MVREINLDNLGVLNKFESSNGHKHFPSKQIKVDLENEEIKKRKATDVTS-FPVPKRRRSLSAHGGFRTPKSNSKAPL 1255 (1393)
Q Consensus 1180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 1255 (1393)
+++|+|+.-+..++.++..|+|.+....+.+-..-..+.-.+.+++.++ ..++.+.+.+..+.+..++.++.+-+.
T Consensus 1014 ~~ke~~~~vl~~l~~~~~n~~~~~~~~~~~~~~~~~d~~s~~d~~~~~kl~~l~d~a~~i~~sk~~~~s~~~tt~~~ 1090 (1266)
T KOG1525|consen 1014 DLKECLWFVLEDLDEENENNQHKFWKREKEEIKGSEDEESPDDVGDNIKLYTLCDLAQCIILSKSTKFSNSSTTSPG 1090 (1266)
T ss_pred HHHHhHHHHHhhhhhhhccchhHHHHHHHhhhhcchhhcCCcccCCCceeeeHHhHHHHHHhcccccccCCCCCCCc
Confidence 9999999999999999999999877555543222222222244444444 678999998888888877776654443
No 3
>PTZ00429 beta-adaptin; Provisional
Probab=98.55 E-value=0.00022 Score=92.09 Aligned_cols=390 Identities=12% Similarity=0.059 Sum_probs=211.5
Q ss_pred ccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000609 269 GELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1393)
Q Consensus 269 ~eL~se~~~~Rl~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L 347 (1393)
.+|.+.+...|..|.+ +++-|.-+ -+...-|+++-+.+ .-.+.++|.-+--+...+...+|+ .+--.++.|
T Consensus 39 ~~L~s~~~~~kk~alKkvIa~mt~G--~DvS~LF~dVvk~~----~S~d~elKKLvYLYL~~ya~~~pe--lalLaINtl 110 (746)
T PTZ00429 39 NDLNGTDSYRKKAAVKRIIANMTMG--RDVSYLFVDVVKLA----PSTDLELKKLVYLYVLSTARLQPE--KALLAVNTF 110 (746)
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHCC--CCchHHHHHHHHHh----CCCCHHHHHHHHHHHHHHcccChH--HHHHHHHHH
Confidence 3445667777777765 66666544 35555556655543 344678887777776665555553 233568999
Q ss_pred HHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcccc
Q 000609 348 CDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1393)
Q Consensus 348 ~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~w 427 (1393)
.+=+.|+++.||.-|+.++|.+-... +-+.++..+..-+.|+++-||+.|.-+++++|+..-. ....-+|
T Consensus 111 ~KDl~d~Np~IRaLALRtLs~Ir~~~---i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~~pe-------lv~~~~~ 180 (746)
T PTZ00429 111 LQDTTNSSPVVRALAVRTMMCIRVSS---VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHDDMQ-------LFYQQDF 180 (746)
T ss_pred HHHcCCCCHHHHHHHHHHHHcCCcHH---HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCcc-------cccccch
Confidence 99999999999999998888544322 2233456677778999999999999999999996421 1123356
Q ss_pred chHHHhhhhcccCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 000609 428 IPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMH 507 (1393)
Q Consensus 428 IP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~ 507 (1393)
+|. +..+..+.|.. .+-.. +..+..+.. -++. .+. + ....+++++......
T Consensus 181 ~~~-L~~LL~D~dp~--Vv~nA---------------l~aL~eI~~-~~~~---~l~-l------~~~~~~~Ll~~L~e~ 231 (746)
T PTZ00429 181 KKD-LVELLNDNNPV--VASNA---------------AAIVCEVND-YGSE---KIE-S------SNEWVNRLVYHLPEC 231 (746)
T ss_pred HHH-HHHHhcCCCcc--HHHHH---------------HHHHHHHHH-hCch---hhH-H------HHHHHHHHHHHhhcC
Confidence 653 34443333321 11111 011111111 0110 010 0 111122222221111
Q ss_pred cCCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCC--h
Q 000609 508 QDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHR--L 585 (1393)
Q Consensus 508 ~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~klnD~ri~klLk~~id~~t~~~t~~~a~~ELlkrL~~~~~--~ 585 (1393)
+ +=.|-. +++.|+..-|+. -.+.......+..+|...++ +
T Consensus 232 ---~-EW~Qi~---IL~lL~~y~P~~-------------------------------~~e~~~il~~l~~~Lq~~N~AVV 273 (746)
T PTZ00429 232 ---N-EWGQLY---ILELLAAQRPSD-------------------------------KESAETLLTRVLPRMSHQNPAVV 273 (746)
T ss_pred ---C-hHHHHH---HHHHHHhcCCCC-------------------------------cHHHHHHHHHHHHHhcCCCHHHH
Confidence 1 111211 223333322221 11122334444555554433 5
Q ss_pred HHHHHHHHHhhhccccchhHHHHHHHHHHh-----hcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhcccc
Q 000609 586 YDFLSTLSMKCSYLLFNKEHVKEILLEVAA-----QKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEI 660 (1393)
Q Consensus 586 ~e~l~~Ll~R~S~li~Nks~V~~LL~~~~~-----~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~ 660 (1393)
++.++.+++-..+. +.+.+..++.++.. ...+.+ ..-.+.+-+..|...+|.+|..+.+.+.-...|.+ .
T Consensus 274 l~Aik~il~l~~~~--~~~~~~~~~~rl~~pLv~L~ss~~e--iqyvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~Dp~-y 348 (746)
T PTZ00429 274 MGAIKVVANLASRC--SQELIERCTVRVNTALLTLSRRDAE--TQYIVCKNIHALLVIFPNLLRTNLDSFYVRYSDPP-F 348 (746)
T ss_pred HHHHHHHHHhcCcC--CHHHHHHHHHHHHHHHHHhhCCCcc--HHHHHHHHHHHHHHHCHHHHHHHHHhhhcccCCcH-H
Confidence 66777666544332 45555554443321 111122 23356777888999999999987655544444433 3
Q ss_pred chhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcC-CC
Q 000609 661 IKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKT-HL 739 (1393)
Q Consensus 661 ~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~~-~l 739 (1393)
+....|.+|+..+.. ++. ..+..-|..|+.+-++.-++.||++|+.+.-.- ....+..+..|++-+..+. ..
T Consensus 349 IK~~KLeIL~~Lane--~Nv----~~IL~EL~eYa~d~D~ef~r~aIrAIg~lA~k~-~~~a~~cV~~Ll~ll~~~~~~v 421 (746)
T PTZ00429 349 VKLEKLRLLLKLVTP--SVA----PEILKELAEYASGVDMVFVVEVVRAIASLAIKV-DSVAPDCANLLLQIVDRRPELL 421 (746)
T ss_pred HHHHHHHHHHHHcCc--ccH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHhcCCchhH
Confidence 678889999887642 111 235566888998888999999999988666421 1223344555555554322 22
Q ss_pred chHHHHHHHHHhhccc
Q 000609 740 PAVLQSLGCIAQTAMP 755 (1393)
Q Consensus 740 ~t~L~sL~~Ia~~ap~ 755 (1393)
...+.++-.|.+..|.
T Consensus 422 ~e~i~vik~IlrkyP~ 437 (746)
T PTZ00429 422 PQVVTAAKDIVRKYPE 437 (746)
T ss_pred HHHHHHHHHHHHHCcc
Confidence 2345555566665664
No 4
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=98.50 E-value=0.0011 Score=86.27 Aligned_cols=566 Identities=15% Similarity=0.161 Sum_probs=294.9
Q ss_pred HHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhccccc-CCChHHHHHHHHHHHHhhcCCCCChhhh
Q 000609 222 AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELL-TDQLDTRLKAVGLVGDLFAVPGSANNEQ 300 (1393)
Q Consensus 222 ~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~-se~~~~Rl~At~llG~mfs~~~~~~~~~ 300 (1393)
..+.|.+...+.-|+. ....+-+.+..+|+--| ++|.|.+-+. +.|+++|..|.-++-|+++..-..+..+
T Consensus 4 ~~l~qLl~~l~spDn~---vr~~Ae~~l~~~~~~~~-----~l~~L~~i~~~~~~p~~Rq~aaVl~Rkl~~~~w~~l~~e 75 (1075)
T KOG2171|consen 4 APLEQLLQQLLSPDNE---VRRQAEEALETLAKTEP-----LLPALAHILATSADPQVRQLAAVLLRKLLTKHWSRLSAE 75 (1075)
T ss_pred hHHHHHHHHhcCCCch---HHHHHHHHHHHhhcccc-----hHHHHHHHHhcCCChHHHHHHHHHHHHHHHHHhhcCCHH
Confidence 3444555555544422 22246777778898888 6777777776 7799999999999999887643333222
Q ss_pred -cHHHHHHHHh-cccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCC
Q 000609 301 -FHSVFSEFLK-RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP 378 (1393)
Q Consensus 301 -~~~~w~~fL~-R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~ 378 (1393)
-.++=...|. =.....+.||.+..+.+..|-.+--.. .-+++++.|..+.+++|+..|-.|+-.+..+...-.....
T Consensus 76 ~~~siks~lL~~~~~E~~~~vr~k~~dviAeia~~~l~e-~WPell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~ 154 (1075)
T KOG2171|consen 76 VQQSIKSSLLEIIQSETEPSVRHKLADVIAEIARNDLPE-KWPELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQ 154 (1075)
T ss_pred HHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhcccc-chHHHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccc
Confidence 2222222222 234567899999999888866654321 4579999999999999999999999998877654333333
Q ss_pred H---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcc-ccchHHHhhhhcccCCCchhHHHHhhccC
Q 000609 379 V---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEF-EWIPGKILRCLYDKDFGSDTIESVLCGSL 454 (1393)
Q Consensus 379 ~---e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~-~wIP~~IL~~~Y~~d~~~~lvE~vl~e~L 454 (1393)
. +++..+.+-|-|-...||-.|.++++.+.... ++++.....| .-+|+-|.-+-- .
T Consensus 155 ~~~~~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~----~~~~~~~~~~~~llP~~l~vl~~----------------~ 214 (1075)
T KOG2171|consen 155 PHLDDLLRLFSQTMTDPSSPVRVAAVRALGAFAEYL----ENNKSEVDKFRDLLPSLLNVLQE----------------V 214 (1075)
T ss_pred hhHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHh----ccchHHHHHHHHHhHHHHHHhHh----------------h
Confidence 2 66778889999999999999999999876532 1223333344 455655543310 0
Q ss_pred cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhh--hcCCCcHHHHHHHHHHHHHHHhhcC
Q 000609 455 FPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQR-LQQEMQRYLSLRQM--HQDGDAPEIQKKILFCFRVMSRSFA 531 (1393)
Q Consensus 455 lP~~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~-l~~~~~~~l~l~~~--~~~~d~~ei~~kl~~~i~~Ls~~fp 531 (1393)
++.. ..+....++ ++|..++..-.+ ++..+...++++-+ .+..-++.+....-.+|-+++..-|
T Consensus 215 i~~~-----d~~~a~~~l--------~~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap 281 (1075)
T KOG2171|consen 215 IQDG-----DDDAAKSAL--------EALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAP 281 (1075)
T ss_pred hhcc-----chHHHHHHH--------HHHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhH
Confidence 0000 000000111 111111111111 22233333344321 1111123333333334555555433
Q ss_pred CchhHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC--CChHHHHHHHHHhhhccccchhHHHHH
Q 000609 532 EPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK--HRLYDFLSTLSMKCSYLLFNKEHVKEI 609 (1393)
Q Consensus 532 Dp~Ka~~~L~kf~klnD~ri~klLk~~id~~t~~~t~~~a~~ELlkrL~~~--~~~~e~l~~Ll~R~S~li~Nks~V~~L 609 (1393)
-..| +...+-++=+-.++.-..+.+.| .+..++ ++ +++. ...+.+-...+-|.|.-+=.+--.+-+
T Consensus 282 ~~~k------~~~~~~~~lv~~~l~~mte~~~D-~ew~~~-d~----~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~ 349 (1075)
T KOG2171|consen 282 AMCK------KLALLGHTLVPVLLAMMTEEEDD-DEWSNE-DD----LDEDDEETPYRAAEQALDRLALHLGGKQVLPPL 349 (1075)
T ss_pred HHhh------hchhhhccHHHHHHHhcCCcccc-hhhccc-cc----cccccccCcHHHHHHHHHHHHhcCChhhehHHH
Confidence 2222 22222333333333333333333 111100 00 0000 111222233333333333223233333
Q ss_pred HHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHH----HhhccccchhhHHHHHHHhhcchHhhhhccc-
Q 000609 610 LLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNL----LKEENEIIKEGILHVLAKAGGTIREQLAATS- 684 (1393)
Q Consensus 610 L~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~l----L~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~- 684 (1393)
+..+..-..+.+-..+..|+--|-.|+.=|+.+..++..+++.+ |.|..+.+...++.++.+.+..+...+....
T Consensus 350 ~~~l~~~l~S~~w~~R~AaL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~~ 429 (1075)
T KOG2171|consen 350 FEALEAMLQSTEWKERHAALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKHH 429 (1075)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHHH
Confidence 33332211222223445556666677777777777776655554 4555667788899998876644322111101
Q ss_pred chHHHH-HHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHHH----hhhhc-C--CCchHHHHHHHHHhhcccc
Q 000609 685 SSVDLL-LERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVD----MLEEK-T--HLPAVLQSLGCIAQTAMPV 756 (1393)
Q Consensus 685 s~l~~~-L~~lal~Gtp~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~~----~L~~~-~--~l~t~L~sL~~Ia~~ap~v 756 (1393)
+.+.+. +..+-..++++.-.||+.+|....-.-....++-++..|+. .|..+ + -...+++++|.+|.-+-.-
T Consensus 430 e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pYLd~lm~~~l~~L~~~~~~~v~e~vvtaIasvA~AA~~~ 509 (1075)
T KOG2171|consen 430 ERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPYLDGLMEKKLLLLLQSSKPYVQEQAVTAIASVADAAQEK 509 (1075)
T ss_pred HhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHhhh
Confidence 112212 22233457788888998888754432211223334444444 34322 2 4455788999999999888
Q ss_pred cccchHHHHHHHHHhhhccccccCCCCCCCCCCChhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhhccCcc
Q 000609 757 FETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSMLSYGEM 836 (1393)
Q Consensus 757 fe~~~~eI~~fiik~IL~~~~~~~~~~~~~W~d~s~~~~aKi~aLK~lvn~ll~~~~~~~~~~i~~ll~lL~~il~~GEl 836 (1393)
|..+-+.++.++. ++|..+.. ++-.+.+.|. +.|+.-.-++...+...+.+..++.++-.+- +|+.
T Consensus 510 F~pY~d~~Mp~L~-~~L~n~~~----------~d~r~Lrgkt--mEcisli~~AVGke~F~~~a~eliqll~~~~-~~~~ 575 (1075)
T KOG2171|consen 510 FIPYFDRLMPLLK-NFLQNADD----------KDLRELRGKT--MECLSLIARAVGKEKFLPLAEELIQLLLELQ-GSDQ 575 (1075)
T ss_pred hHhHHHHHHHHHH-HHHhCCCc----------hhhHHHHhhH--HHHHHHHHHHhhhhhhhHhHHHHHHHHHhhc-ccch
Confidence 9988888998865 45443321 1122333343 5555544444444456666777777765432 3344
Q ss_pred ccCCC-CChhHHhhhhHHHH
Q 000609 837 SEDIE-SSSVDKAHLRLASA 855 (1393)
Q Consensus 837 ~~~~~-tp~~~ksrLRLaAa 855 (1393)
....+ ++....+|-|++-+
T Consensus 576 ~~dd~~~sy~~~~warmc~i 595 (1075)
T KOG2171|consen 576 DDDDPLRSYMIAFWARMCRI 595 (1075)
T ss_pred hhccccHHHHHHHHHHHHHH
Confidence 33322 23344555555443
No 5
>PTZ00429 beta-adaptin; Provisional
Probab=98.16 E-value=0.0051 Score=79.86 Aligned_cols=122 Identities=14% Similarity=0.071 Sum_probs=96.0
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000609 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1393)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1393)
|--+....+..|++..-++..|...|.+.|+.+|-+|.+++|.+-. ..-.+.+.....+-..|.+|-||...+=
T Consensus 89 YLYL~~ya~~~pelalLaINtl~KDl~d~Np~IRaLALRtLs~Ir~------~~i~e~l~~~lkk~L~D~~pYVRKtAal 162 (746)
T PTZ00429 89 YLYVLSTARLQPEKALLAVNTFLQDTTNSSPVVRALAVRTMMCIRV------SSVLEYTLEPLRRAVADPDPYVRKTAAM 162 (746)
T ss_pred HHHHHHHcccChHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHcCCc------HHHHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence 4445455667899999999999999999999999999999996543 2333455666666778999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh
Q 000609 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1393)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1393)
++..+...+|+.-....+++.|.+.|.|.|..|-..|+.++.++....
T Consensus 163 ai~Kly~~~pelv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~ 210 (746)
T PTZ00429 163 GLGKLFHDDMQLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYG 210 (746)
T ss_pred HHHHHHhhCcccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhC
Confidence 999988888864333457778888899999999999999988875433
No 6
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.99 E-value=0.15 Score=68.65 Aligned_cols=135 Identities=21% Similarity=0.282 Sum_probs=102.1
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000609 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1393)
Q Consensus 297 ~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~ 376 (1393)
|...|....+.-|+=..--.+.||..+++|...|....|+-.-..++-.++..|++|+---||-|||.-++.......+.
T Consensus 810 f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~ 889 (1692)
T KOG1020|consen 810 FSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQEAVHGRLNDSSASVREAALDLVGRFVLSIPEL 889 (1692)
T ss_pred HHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHH
Confidence 44555555555555556778999999999999988887764334688899999999999999999999999654443332
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhh-cccCCCc
Q 000609 377 IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCL-YDKDFGS 443 (1393)
Q Consensus 377 v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~-Y~~d~~~ 443 (1393)
+ .+....+++|+.|--..||+.+|+-|-.+|-.+ +.|.-||.-+-... ..+|-+.
T Consensus 890 ~-~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~-----------pdf~~i~~~cakmlrRv~DEEg 945 (1692)
T KOG1020|consen 890 I-FQYYDQIIERILDTGVSVRKRVIKILRDICEET-----------PDFSKIVDMCAKMLRRVNDEEG 945 (1692)
T ss_pred H-HHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhC-----------CChhhHHHHHHHHHHHhccchh
Confidence 2 344678899999999999999999999999874 44666776655543 3666553
No 7
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.93 E-value=0.003 Score=78.96 Aligned_cols=117 Identities=15% Similarity=0.151 Sum_probs=98.2
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 324 (1393)
.|-.+..++...|+++.-++..|...|.++|+.+|-.|.+++|.+-.. +++ +.+...-.+-..|.+|.||...+
T Consensus 62 ~yl~l~~~~~~~~~~~~l~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~---~~l~~~v~~ll~~~~~~VRk~A~ 135 (526)
T PF01602_consen 62 GYLYLSLYLHEDPELLILIINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMA---EPLIPDVIKLLSDPSPYVRKKAA 135 (526)
T ss_dssp HHHHHHHHTTTSHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHH---HHHHHHHHHHHHSSSHHHHHHHH
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chh---hHHHHHHHHHhcCCchHHHHHHH
Confidence 566778888999998888999999999999999999999999996522 233 45666666667799999999999
Q ss_pred HHhHHHHhcCCCCCChHH-HHHHHHHHhCCchhHHHHHHHHHHHHh
Q 000609 325 EHVKSCLLTDPSRADAPQ-ILTALCDRLLDFDENVRKQVVAVICDV 369 (1393)
Q Consensus 325 ~~~~~iL~~~p~~~~~~e-i~~~L~~rL~D~DekVR~aaV~ai~~l 369 (1393)
-++..+....|+. ... +++.+...|.|+|..|+.+|+.+++++
T Consensus 136 ~~l~~i~~~~p~~--~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i 179 (526)
T PF01602_consen 136 LALLKIYRKDPDL--VEDELIPKLKQLLSDKDPSVVSAALSLLSEI 179 (526)
T ss_dssp HHHHHHHHHCHCC--HHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH
T ss_pred HHHHHHhccCHHH--HHHHHHHHHhhhccCCcchhHHHHHHHHHHH
Confidence 9999999888763 334 789999999999999999999999987
No 8
>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=97.84 E-value=0.22 Score=67.11 Aligned_cols=164 Identities=20% Similarity=0.200 Sum_probs=130.5
Q ss_pred HHHHHHHHhhcchhhhhhhhhhccc---ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH
Q 000609 246 HEVIYDVYRCSPQILSGVVPYLTGE---LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1393)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~e---L~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~ 322 (1393)
-.+|+..-..+-++..+.=|+|..- |..+...+|.+|.+.|..|...+. ..-.+|+.=.+--+|++|-+..||-+
T Consensus 797 a~li~~~la~~r~f~~sfD~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp--~vL~~~dvq~~Vh~R~~DssasVREA 874 (1692)
T KOG1020|consen 797 AKLIVFYLAHARSFSQSFDPYLKLILSVLGENAIALRTKALKCLSMIVEADP--SVLSRPDVQEAVHGRLNDSSASVREA 874 (1692)
T ss_pred HHHHHHHHHhhhHHHHhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhcCh--HhhcCHHHHHHHHHhhccchhHHHHH
Confidence 3444444444445555544444432 345679999999999999998865 57789999999999999999999999
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC-CHHHHHHHHHhhccCChhHHHHHH
Q 000609 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI-PVETVKLVAERLRDKSVLVKRYTM 401 (1393)
Q Consensus 323 ~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v-~~e~L~~l~eR~rDKK~~VR~eAm 401 (1393)
.|+.++.+++++|+ .+.+.-+.+.+|..|+---||..|++.++++....++.. -+++...+..|+-|=--.|.+-+.
T Consensus 875 aldLvGrfvl~~~e--~~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~~cakmlrRv~DEEg~I~kLv~ 952 (1692)
T KOG1020|consen 875 ALDLVGRFVLSIPE--LIFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIVDMCAKMLRRVNDEEGNIKKLVR 952 (1692)
T ss_pred HHHHHhhhhhccHH--HHHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhccchhHHHHHHH
Confidence 99999999999985 366888999999999999999999999999866554422 234556677999999888999999
Q ss_pred HHHHHHHHHhhh
Q 000609 402 ERLADIFRGCCL 413 (1393)
Q Consensus 402 ~~La~lY~~~~~ 413 (1393)
+.+-++|-.=+.
T Consensus 953 etf~klWF~p~~ 964 (1692)
T KOG1020|consen 953 ETFLKLWFTPVP 964 (1692)
T ss_pred HHHHHHhccCCC
Confidence 999999986443
No 9
>PRK09687 putative lyase; Provisional
Probab=97.62 E-value=0.00039 Score=80.66 Aligned_cols=145 Identities=17% Similarity=0.143 Sum_probs=102.5
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc-ccCCChhHHHHHH
Q 000609 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR-LTDRIVAVRMSVL 324 (1393)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R-~~D~s~~VR~~~v 324 (1393)
...+..|...-.. .+++.+..-+.++|..+|..|+..||++ +.++... +.++.....- .+|.++.||...+
T Consensus 41 ~~A~~aL~~~~~~---~~~~~l~~ll~~~d~~vR~~A~~aLg~l-g~~~~~~----~~a~~~L~~l~~~D~d~~VR~~A~ 112 (280)
T PRK09687 41 ISSIRVLQLRGGQ---DVFRLAIELCSSKNPIERDIGADILSQL-GMAKRCQ----DNVFNILNNLALEDKSACVRASAI 112 (280)
T ss_pred HHHHHHHHhcCcc---hHHHHHHHHHhCCCHHHHHHHHHHHHhc-CCCccch----HHHHHHHHHHHhcCCCHHHHHHHH
Confidence 4456666655432 2333344446789999999999999985 4433211 2233333323 4899999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000609 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1393)
Q Consensus 325 ~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~L 404 (1393)
...+++=...+. ....++..+...+.|.|..||.+|+.+++.+. +.+.+..|...+.|..+.||..|+..|
T Consensus 113 ~aLG~~~~~~~~--~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~-------~~~ai~~L~~~L~d~~~~VR~~A~~aL 183 (280)
T PRK09687 113 NATGHRCKKNPL--YSPKIVEQSQITAFDKSTNVRFAVAFALSVIN-------DEAAIPLLINLLKDPNGDVRNWAAFAL 183 (280)
T ss_pred HHHhcccccccc--cchHHHHHHHHHhhCCCHHHHHHHHHHHhccC-------CHHHHHHHHHHhcCCCHHHHHHHHHHH
Confidence 998875221111 12367788888999999999999999887432 355678888999999999999999999
Q ss_pred HHH
Q 000609 405 ADI 407 (1393)
Q Consensus 405 a~l 407 (1393)
|.+
T Consensus 184 g~~ 186 (280)
T PRK09687 184 NSN 186 (280)
T ss_pred hcC
Confidence 998
No 10
>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.
Probab=97.56 E-value=0.13 Score=64.55 Aligned_cols=239 Identities=13% Similarity=0.228 Sum_probs=157.9
Q ss_pred hHHHHHHHHHhhcchhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH
Q 000609 244 DYHEVIYDVYRCSPQILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~-ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~ 322 (1393)
++-.-+..+++..|+++.. ++|.|..-|...+..++..|+.++..+ ..++..+..-.+.++....+...+.+|-+++.
T Consensus 133 ~A~~~l~~i~~~~p~~~~~~~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~~~~~~~~~~~~~L~~~l~~~~~~~q~~ 211 (526)
T PF01602_consen 133 KAALALLKIYRKDPDLVEDELIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDDSYKSLIPKLIRILCQLLSDPDPWLQIK 211 (526)
T ss_dssp HHHHHHHHHHHHCHCCHHGGHHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHHHHTTHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhhhccCCcchhHHHHHHHHHHH-ccCcchhhhhHHHHHHHhhhcccccchHHHHH
Confidence 4667788999999999988 799999999999999999999999999 33221222344555555555558999999999
Q ss_pred HHHHhHHHHhcCCCCCCh--HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHH
Q 000609 323 VLEHVKSCLLTDPSRADA--PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYT 400 (1393)
Q Consensus 323 ~v~~~~~iL~~~p~~~~~--~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eA 400 (1393)
.++....+....+. .. ..+++.+...+......|+.+++.++..+..... +-...+..+..-+.++.+.||-.|
T Consensus 212 il~~l~~~~~~~~~--~~~~~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~~~~~--~~~~~~~~L~~lL~s~~~nvr~~~ 287 (526)
T PF01602_consen 212 ILRLLRRYAPMEPE--DADKNRIIEPLLNLLQSSSPSVVYEAIRLIIKLSPSPE--LLQKAINPLIKLLSSSDPNVRYIA 287 (526)
T ss_dssp HHHHHTTSTSSSHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSHH--HHHHHHHHHHHHHTSSSHHHHHHH
T ss_pred HHHHHHhcccCChh--hhhHHHHHHHHHHHhhccccHHHHHHHHHHHHhhcchH--HHHhhHHHHHHHhhcccchhehhH
Confidence 99998875544332 23 4688999999999999999999999997665433 223446677888889999999999
Q ss_pred HHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 000609 401 MERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEM 480 (1393)
Q Consensus 401 m~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~ 480 (1393)
+..|..+-..+ |..+.+..+ .+..+. ...+..-|...+--++.-.++...
T Consensus 288 L~~L~~l~~~~-----------------~~~v~~~~~-------~~~~l~------~~~d~~Ir~~~l~lL~~l~~~~n~ 337 (526)
T PF01602_consen 288 LDSLSQLAQSN-----------------PPAVFNQSL-------ILFFLL------YDDDPSIRKKALDLLYKLANESNV 337 (526)
T ss_dssp HHHHHHHCCHC-----------------HHHHGTHHH-------HHHHHH------CSSSHHHHHHHHHHHHHH--HHHH
T ss_pred HHHHHHhhccc-----------------chhhhhhhh-------hhheec------CCCChhHHHHHHHHHhhcccccch
Confidence 98887776553 222221110 011111 112333455555555555566544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCc
Q 000609 481 KALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEP 533 (1393)
Q Consensus 481 kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp 533 (1393)
+. +-.++.+|+ ++..+++++..+...|..++..||..
T Consensus 338 ~~----------Il~eL~~~l------~~~~d~~~~~~~i~~I~~la~~~~~~ 374 (526)
T PF01602_consen 338 KE----------ILDELLKYL------SELSDPDFRRELIKAIGDLAEKFPPD 374 (526)
T ss_dssp HH----------HHHHHHHHH------HHC--HHHHHHHHHHHHHHHHHHGSS
T ss_pred hh----------HHHHHHHHH------HhccchhhhhhHHHHHHHHHhccCch
Confidence 32 223334444 11234567788888888888777554
No 11
>PRK09687 putative lyase; Provisional
Probab=97.45 E-value=0.001 Score=77.19 Aligned_cols=129 Identities=16% Similarity=0.069 Sum_probs=99.6
Q ss_pred hhhhhhccc-ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000609 262 GVVPYLTGE-LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1393)
Q Consensus 262 ~ViP~Le~e-L~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~ 340 (1393)
.++|.|..- +...+..+|..|+..||.+-.. +. ..-+.+...+..-..|.++.||...+...+.+ . +
T Consensus 90 ~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~-~~---~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~----~--~-- 157 (280)
T PRK09687 90 NVFNILNNLALEDKSACVRASAINATGHRCKK-NP---LYSPKIVEQSQITAFDKSTNVRFAVAFALSVI----N--D-- 157 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhccccc-cc---ccchHHHHHHHHHhhCCCHHHHHHHHHHHhcc----C--C--
Confidence 455666655 4567899999999999998432 21 11234556677778899999999999987642 1 1
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 341 ~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
.+.++.|...|.|+|..||..|+.+++.+.. -+.+....|...+.|....||..|+.+||++
T Consensus 158 ~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~-----~~~~~~~~L~~~L~D~~~~VR~~A~~aLg~~ 219 (280)
T PRK09687 158 EAAIPLLINLLKDPNGDVRNWAAFALNSNKY-----DNPDIREAFVAMLQDKNEEIRIEAIIGLALR 219 (280)
T ss_pred HHHHHHHHHHhcCCCHHHHHHHHHHHhcCCC-----CCHHHHHHHHHHhcCCChHHHHHHHHHHHcc
Confidence 3688999999999999999999999997621 2446677788889999999999999999984
No 12
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=97.37 E-value=1 Score=58.57 Aligned_cols=366 Identities=15% Similarity=0.163 Sum_probs=204.2
Q ss_pred CCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHH
Q 000609 21 STKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKD 100 (1393)
Q Consensus 21 ~s~~~LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~Lkd 100 (1393)
..+.+|.++|++-+-.| +.++...+.+.|+ ++|.-++.+||-+..-||+=+.- --..++++.
T Consensus 24 MAtsDLm~eLqkdsi~L----------d~dSe~kvv~~lL--klL~D~ngEVQnlAVKClg~lvs------Kvke~~le~ 85 (1233)
T KOG1824|consen 24 MATSDLMTELQKDSIKL----------DDDSERKVVKMLL--KLLEDKNGEVQNLAVKCLGPLVS------KVKEDQLET 85 (1233)
T ss_pred hhHHHHHHHHHhhhhhc----------cccchhHHHHHHH--HHHhccCcHHHHHHHHHHHHHHh------hchHHHHHH
Confidence 45677888877753333 2334445555554 47888999999999999875541 112345555
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcC-----CChhhHHHHHHHHH
Q 000609 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASD-----DHPESVLSSMQTIM 175 (1393)
Q Consensus 101 IF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~-----~~~~~v~~~m~~IL 175 (1393)
+-.=+..-. +++.+.--|.-...|...++++.-++ ...+-..+|+.|.....+ +...-+.-...+||
T Consensus 86 ~ve~L~~~~--~s~keq~rdissi~Lktvi~nl~P~~------~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil 157 (1233)
T KOG1824|consen 86 IVENLCSNM--LSGKEQLRDISSIGLKTVIANLPPSS------SSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDIL 157 (1233)
T ss_pred HHHHHhhhh--ccchhhhccHHHHHHHHHHhcCCCcc------ccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHH
Confidence 443333320 23333333344445555555443110 123344444444433222 22223555678888
Q ss_pred HHHhcccccc-cH---HHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC--CCCCCCchh-HHHH
Q 000609 176 IVLLEESEDI-QE---DLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD--SRPGHSHID-YHEV 248 (1393)
Q Consensus 176 ~~vI~Ese~v-p~---~vLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d--~~~~~~~~~-~h~L 248 (1393)
..++.-..++ |+ .++..++-++..++. +-++=|.-.+..-+....+.+-.++.+.+... +....+..+ +-..
T Consensus 158 ~d~lsr~g~ll~~fh~~il~~l~~ql~s~R~-aVrKkai~~l~~la~~~~~~ly~~li~~Ll~~L~~~~q~~~~rt~Iq~ 236 (1233)
T KOG1824|consen 158 ADVLSRFGTLLPNFHLSILKCLLPQLQSPRL-AVRKKAITALGHLASSCNRDLYVELIEHLLKGLSNRTQMSATRTYIQC 236 (1233)
T ss_pred HHHHHhhcccCcchHHHHHHHHhhcccChHH-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCCCchHHHHHHHHH
Confidence 8888776553 32 344444444433321 22333333333323333333333333332211 112222222 3344
Q ss_pred HHHHHhhcc----hhhhhhhhhhcccc---cCCChHHHHHHHHHHHHhhcCCCCC---------------------hh-h
Q 000609 249 IYDVYRCSP----QILSGVVPYLTGEL---LTDQLDTRLKAVGLVGDLFAVPGSA---------------------NN-E 299 (1393)
Q Consensus 249 i~eL~~~~P----~lL~~ViP~Le~eL---~se~~~~Rl~At~llG~mfs~~~~~---------------------~~-~ 299 (1393)
|-+|.+.+= .-+..++|.+.+.. ..++.++|....+.++-.+--..-+ +. .
T Consensus 237 l~~i~r~ag~r~~~h~~~ivp~v~~y~~~~e~~dDELrE~~lQale~fl~rcp~ei~p~~pei~~l~l~yisYDPNy~yd 316 (1233)
T KOG1824|consen 237 LAAICRQAGHRFGSHLDKIVPLVADYCNKIEEDDDELREYCLQALESFLRRCPKEILPHVPEIINLCLSYISYDPNYNYD 316 (1233)
T ss_pred HHHHHHHhcchhhcccchhhHHHHHHhcccccCcHHHHHHHHHHHHHHHHhChhhhcccchHHHHHHHHHhccCCCCCCC
Confidence 445544432 23455777777777 7889999999999888655432111 10 0
Q ss_pred hcHHHHHHHHhc------------ccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHHHhCCchhHHHHHHHHH
Q 000609 300 QFHSVFSEFLKR------------LTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAV 365 (1393)
Q Consensus 300 ~~~~~w~~fL~R------------~~D~s~~VR~~~v~~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DekVR~aaV~a 365 (1393)
+.-+.=..|+.- =.|.+=.||.+..++....+.++++. .--+.+-..+..|+.|-+|.|+..+..+
T Consensus 317 ~~eDed~~~~ed~eDde~~deYsDDeD~SWkVRRaAaKcl~a~IsSR~E~L~~~~q~l~p~lI~RfkEREEnVk~dvf~~ 396 (1233)
T KOG1824|consen 317 TEEDEDAMFLEDEEDDEQDDEYSDDEDMSWKVRRAAAKCLEAVISSRLEMLPDFYQTLGPALISRFKEREENVKADVFHA 396 (1233)
T ss_pred CccchhhhhhhccccchhccccccccchhHHHHHHHHHHHHHHHhccHHHHHHHHHHhCHHHHHHHHHHhhhHHHHHHHH
Confidence 001112222222 23455679999999999999887642 1123455788889999999999999999
Q ss_pred HHHhhhhhcCCC---------------------CH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000609 366 ICDVACHALNSI---------------------PV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1393)
Q Consensus 366 i~~la~~~l~~v---------------------~~---e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~ 413 (1393)
+.++-.....-+ +. -+++.++.-+|+|+..-|.-|+..|..+-+.+.+
T Consensus 397 yi~ll~qt~~~~~~~~d~d~~e~~g~~s~~~~L~~~~~~iVkai~~qlr~ks~kt~~~cf~lL~eli~~lp~ 468 (1233)
T KOG1824|consen 397 YIALLKQTRPVIEVLADNDAMEQGGTPSDLSMLSDQVPLIVKAIQKQLREKSVKTRQGCFLLLTELINVLPG 468 (1233)
T ss_pred HHHHHHcCCCCcccccCchhhhccCCccchHHHHhhhHHHHHHHHHHHhhccccchhhHHHHHHHHHHhCcc
Confidence 987754332211 11 2357889999999999999999999999998743
No 13
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.22 E-value=0.22 Score=63.58 Aligned_cols=354 Identities=18% Similarity=0.162 Sum_probs=204.0
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC
Q 000609 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1393)
Q Consensus 259 lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~ 338 (1393)
+|.-+.-.|...|++.|--+==+|.-+||.|++. .+++ ++.-+--.-.+-.++-||.+.+-|+-.++..-|+.
T Consensus 104 vllLltNslknDL~s~nq~vVglAL~alg~i~s~---Emar---dlapeVe~Ll~~~~~~irKKA~Lca~r~irK~P~l- 176 (866)
T KOG1062|consen 104 LLLLLTNSLKNDLNSSNQYVVGLALCALGNICSP---EMAR---DLAPEVERLLQHRDPYIRKKAALCAVRFIRKVPDL- 176 (866)
T ss_pred HHHHHHHHHHhhccCCCeeehHHHHHHhhccCCH---HHhH---HhhHHHHHHHhCCCHHHHHHHHHHHHHHHHcCchH-
Confidence 3344455778899999988888999999999875 2333 33333333334478899999999999999888853
Q ss_pred ChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCC
Q 000609 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNG 418 (1393)
Q Consensus 339 ~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~ 418 (1393)
.+-++.....+|.|-|..|=.++|.-+.++...+++ .+ ++-|| ....|-.+-+.... +
T Consensus 177 -~e~f~~~~~~lL~ek~hGVL~~~l~l~~e~c~~~~~-----~l----~~fr~--------l~~~lV~iLk~l~~----~ 234 (866)
T KOG1062|consen 177 -VEHFVIAFRKLLCEKHHGVLIAGLHLITELCKISPD-----AL----SYFRD--------LVPSLVKILKQLTN----S 234 (866)
T ss_pred -HHHhhHHHHHHHhhcCCceeeeHHHHHHHHHhcCHH-----HH----HHHHH--------HHHHHHHHHHHHhc----C
Confidence 456778888899999999999888887776655432 22 11111 12222222222111 1
Q ss_pred Ccch-hccccchHHHhhhhcccCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHH
Q 000609 419 SINQ-NEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEM 497 (1393)
Q Consensus 419 ~~~~-~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~l~~~~ 497 (1393)
.... -.+..||+=.|+ -|.-|++.+++.-|+++...+..+|.+..+
T Consensus 235 ~yspeydv~gi~dPFLQ----------------------------i~iLrlLriLGq~d~daSd~M~DiLaqvat----- 281 (866)
T KOG1062|consen 235 GYSPEYDVHGISDPFLQ----------------------------IRILRLLRILGQNDADASDLMNDILAQVAT----- 281 (866)
T ss_pred CCCCccCccCCCchHHH----------------------------HHHHHHHHHhcCCCccHHHHHHHHHHHHHh-----
Confidence 1110 123444433333 256677888888888888777777764433
Q ss_pred HHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCch---hHHHHHHHHHhhccHHHHH-HHHHHhcC-CCCHHHHHHHH
Q 000609 498 QRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPA---KAEENFLILDQLKDANVWK-ILMNLLDS-NTSFDQAFTGR 572 (1393)
Q Consensus 498 ~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~---Ka~~~L~kf~klnD~ri~k-lLk~~id~-~t~~~t~~~a~ 572 (1393)
..+...-.-.+-|-.|++-|...-|++. .|-..|-+|-.=.|.++.+ .|..+... +.|-.-+..=+
T Consensus 282 ---------ntdsskN~GnAILYE~V~TI~~I~~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~avqrHr 352 (866)
T KOG1062|consen 282 ---------NTDSSKNAGNAILYECVRTIMDIRSNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPTAVQRHR 352 (866)
T ss_pred ---------cccccccchhHHHHHHHHHHHhccCCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcHHHHHHH
Confidence 0111111122234555666666566654 4555677777667776643 33333322 23333344445
Q ss_pred HHHHHHhcCCCC-hH-HHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccH-HH
Q 000609 573 DDLLKILGAKHR-LY-DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTE-EE 649 (1393)
Q Consensus 573 ~ELlkrL~~~~~-~~-e~l~~Ll~R~S~li~Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~-~~ 649 (1393)
.-++--|.++-+ +. .++. .++.++|.+||..++++ ||..+-.. ++-|++.. ..
T Consensus 353 ~tIleCL~DpD~SIkrralE-----Ls~~lvn~~Nv~~mv~e------------------Ll~fL~~~-d~~~k~~~as~ 408 (866)
T KOG1062|consen 353 STILECLKDPDVSIKRRALE-----LSYALVNESNVRVMVKE------------------LLEFLESS-DEDFKADIASK 408 (866)
T ss_pred HHHHHHhcCCcHHHHHHHHH-----HHHHHhccccHHHHHHH------------------HHHHHHhc-cHHHHHHHHHH
Confidence 555656655421 11 1222 35668899999888874 33344333 44445443 33
Q ss_pred HHHHHhh---ccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000609 650 LVNLLKE---ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1393)
Q Consensus 650 L~~lL~~---~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~ 714 (1393)
.+.+.+. ++-.-...++++|..+|.++++. ...-|-++.-+|.+..=+|+++-|.+..
T Consensus 409 I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~d-------v~~nll~LIa~~~~e~~~y~~~rLy~a~ 469 (866)
T KOG1062|consen 409 IAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDD-------VVNNLLRLIANAFQELHEYAVLRLYLAL 469 (866)
T ss_pred HHHHHHhcCCcchhHHHHHHHHHHhcccccchh-------hHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 3333332 12233466788888888776554 3344666777787777778888876433
No 14
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=97.09 E-value=0.057 Score=72.51 Aligned_cols=262 Identities=15% Similarity=0.134 Sum_probs=142.1
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000609 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1393)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL 142 (1393)
..|++.|.+||..++-.|.++-. .++...++..| .|++.. -+...++.|.++ .-.+
T Consensus 628 ~~L~D~d~~VR~~Av~~L~~~~~-------------~~~~~~L~~aL---~D~d~~---VR~~Aa~aL~~l-----~~~~ 683 (897)
T PRK13800 628 PYLADPDPGVRRTAVAVLTETTP-------------PGFGPALVAAL---GDGAAA---VRRAAAEGLREL-----VEVL 683 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhhhcc-------------hhHHHHHHHHH---cCCCHH---HHHHHHHHHHHH-----Hhcc
Confidence 45689999999999999998741 23445555443 454332 223555555443 1123
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHhhh
Q 000609 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAG 218 (1393)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~----~a~~lA~~vi~~~~d 218 (1393)
++...+..+++. ....|.....+.|..+-.. . ...++..+...... +++.|+. . +
T Consensus 684 ~~~~~L~~~L~~--------~d~~VR~~A~~aL~~~~~~--~-----~~~l~~~L~D~d~~VR~~Av~aL~~-----~-~ 742 (897)
T PRK13800 684 PPAPALRDHLGS--------PDPVVRAAALDVLRALRAG--D-----AALFAAALGDPDHRVRIEAVRALVS-----V-D 742 (897)
T ss_pred CchHHHHHHhcC--------CCHHHHHHHHHHHHhhccC--C-----HHHHHHHhcCCCHHHHHHHHHHHhc-----c-c
Confidence 344444444322 2346776666666664311 1 12344444332111 2233332 0 1
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCchh--HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000609 219 KLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1393)
Q Consensus 219 kl~~~i~q~f~~~l~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~ 296 (1393)
.. +.+... +..+ +...+ +-.-+-.+..-.+.. +|.|..-|..++..+|..|+..||.+-..+
T Consensus 743 ~~-~~l~~~----l~D~----~~~VR~~aa~aL~~~~~~~~~~----~~~L~~ll~D~d~~VR~aA~~aLg~~g~~~--- 806 (897)
T PRK13800 743 DV-ESVAGA----ATDE----NREVRIAVAKGLATLGAGGAPA----GDAVRALTGDPDPLVRAAALAALAELGCPP--- 806 (897)
T ss_pred Cc-HHHHHH----hcCC----CHHHHHHHHHHHHHhccccchh----HHHHHHHhcCCCHHHHHHHHHHHHhcCCcc---
Confidence 11 122221 1111 11121 112333333222211 344445566678888888888888773321
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000609 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1393)
Q Consensus 297 ~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~ 376 (1393)
......+.-..|.++.||...++....+ +. .+.++.|...|.|++..||.+|+.+++.+ .
T Consensus 807 ------~~~~~l~~aL~d~d~~VR~~Aa~aL~~l----~~----~~a~~~L~~~L~D~~~~VR~~A~~aL~~~------~ 866 (897)
T PRK13800 807 ------DDVAAATAALRASAWQVRQGAARALAGA----AA----DVAVPALVEALTDPHLDVRKAAVLALTRW------P 866 (897)
T ss_pred ------hhHHHHHHHhcCCChHHHHHHHHHHHhc----cc----cchHHHHHHHhcCCCHHHHHHHHHHHhcc------C
Confidence 1112233445677888888888887641 11 24667777888888888888888887764 2
Q ss_pred CCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000609 377 IPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1393)
Q Consensus 377 v~~e~L~~l~eR~rDKK~~VR~eAm~~La 405 (1393)
.+......|...+.|....||++|...|.
T Consensus 867 ~~~~a~~~L~~al~D~d~~Vr~~A~~aL~ 895 (897)
T PRK13800 867 GDPAARDALTTALTDSDADVRAYARRALA 895 (897)
T ss_pred CCHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence 34556667777888888888888888775
No 15
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=96.90 E-value=0.033 Score=60.39 Aligned_cols=94 Identities=15% Similarity=0.161 Sum_probs=84.5
Q ss_pred ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh
Q 000609 316 IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL 395 (1393)
Q Consensus 316 s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~ 395 (1393)
+|.||.-++-..+++...+|. .....++.+..+|.|+++.||..|+.++..+....+-.+...++..+...+.|..+.
T Consensus 1 ~~~vR~n~i~~l~DL~~r~~~--~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k~~l~~~~l~~l~D~~~~ 78 (178)
T PF12717_consen 1 DPSVRNNAIIALGDLCIRYPN--LVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVKGQLFSRILKLLVDENPE 78 (178)
T ss_pred CHHHHHHHHHHHHHHHHhCcH--HHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeehhhhhHHHHHHHcCCCHH
Confidence 478999999999999988875 345788899999999999999999999999999888888888878888899999999
Q ss_pred HHHHHHHHHHHHHHHh
Q 000609 396 VKRYTMERLADIFRGC 411 (1393)
Q Consensus 396 VR~eAm~~La~lY~~~ 411 (1393)
||..|...+..+....
T Consensus 79 Ir~~A~~~~~e~~~~~ 94 (178)
T PF12717_consen 79 IRSLARSFFSELLKKR 94 (178)
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999998874
No 16
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.69 E-value=0.84 Score=58.31 Aligned_cols=130 Identities=15% Similarity=0.203 Sum_probs=92.3
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHH
Q 000609 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR 350 (1393)
Q Consensus 271 L~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~r 350 (1393)
|.+.....-+.|.+-+=-|++. |-+... +|-+-.+-..-++++|+..+-=+.-+.-..+|+... -=+..+++-
T Consensus 44 LdSnkd~~KleAmKRIia~iA~-G~dvS~----~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLAL--LSIntfQk~ 116 (968)
T KOG1060|consen 44 LDSNKDSLKLEAMKRIIALIAK-GKDVSL----LFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLAL--LSINTFQKA 116 (968)
T ss_pred HhccccHHHHHHHHHHHHHHhc-CCcHHH----HHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCcee--eeHHHHHhh
Confidence 5567777777887765556554 434444 455555666677888887665555444455665332 236899999
Q ss_pred hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 351 LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 351 L~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
|.|+...+|.-|..++.++-... |-.=+|-++.+-.+|-.+-||+.|...+-++|+.
T Consensus 117 L~DpN~LiRasALRvlSsIRvp~---IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsL 173 (968)
T KOG1060|consen 117 LKDPNQLIRASALRVLSSIRVPM---IAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSL 173 (968)
T ss_pred hcCCcHHHHHHHHHHHHhcchhh---HHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcC
Confidence 99999999999888877543322 2223466889999999999999999999999995
No 17
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=96.68 E-value=0.0096 Score=55.97 Aligned_cols=83 Identities=23% Similarity=0.304 Sum_probs=66.4
Q ss_pred HHhcc-cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHH
Q 000609 308 FLKRL-TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVA 386 (1393)
Q Consensus 308 fL~R~-~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~ 386 (1393)
++... +|.++.||...+...+.+ ...++++.|...+.|+|..||.+|+.+++.+. +.+.+..+.
T Consensus 4 L~~~l~~~~~~~vr~~a~~~L~~~--------~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i~-------~~~~~~~L~ 68 (88)
T PF13646_consen 4 LLQLLQNDPDPQVRAEAARALGEL--------GDPEAIPALIELLKDEDPMVRRAAARALGRIG-------DPEAIPALI 68 (88)
T ss_dssp HHHHHHTSSSHHHHHHHHHHHHCC--------THHHHHHHHHHHHTSSSHHHHHHHHHHHHCCH-------HHHTHHHHH
T ss_pred HHHHHhcCCCHHHHHHHHHHHHHc--------CCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhC-------CHHHHHHHH
Confidence 44555 799999999999887731 13588999999999999999999999999663 345677778
Q ss_pred Hhhcc-CChhHHHHHHHHHH
Q 000609 387 ERLRD-KSVLVKRYTMERLA 405 (1393)
Q Consensus 387 eR~rD-KK~~VR~eAm~~La 405 (1393)
+.+.| ....||..|+..||
T Consensus 69 ~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 69 KLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp HHHTC-SSHHHHHHHHHHHH
T ss_pred HHHcCCCcHHHHHHHHhhcC
Confidence 87777 45678999999986
No 18
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.57 E-value=2.7 Score=53.54 Aligned_cols=126 Identities=22% Similarity=0.297 Sum_probs=91.1
Q ss_pred ccccCCChHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000609 269 GELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1393)
Q Consensus 269 ~eL~se~~~~Rl~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L 347 (1393)
--+.+.+-.+|-...+++..+....+ .. -.-|.-+-...+.|..|+.|.||++.|.+... +.-.|. ++.-.+...+
T Consensus 92 Rg~Eskdk~VRfrvlqila~l~d~~~-eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsr-lQ~d~~-dee~~v~n~l 168 (892)
T KOG2025|consen 92 RGTESKDKKVRFRVLQILALLSDENA-EIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSR-LQGDPK-DEECPVVNLL 168 (892)
T ss_pred hcccCcchhHHHHHHHHHHHHhcccc-ccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHH-HhcCCC-CCcccHHHHH
Confidence 33557899999999999999887432 11 12344455588999999999999999999876 443332 3334566666
Q ss_pred HHHh-CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000609 348 CDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 348 ~~rL-~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~ 406 (1393)
..-+ +||.+.||.+|.-.|. ++..++-.+.||+||=+..+|+-+-.++..
T Consensus 169 ~~liqnDpS~EVRRaaLsnI~---------vdnsTlp~IveRarDV~~anRrlvY~r~lp 219 (892)
T KOG2025|consen 169 KDLIQNDPSDEVRRAALSNIS---------VDNSTLPCIVERARDVSGANRRLVYERCLP 219 (892)
T ss_pred HHHHhcCCcHHHHHHHHHhhc---------cCcccchhHHHHhhhhhHHHHHHHHHHhhh
Confidence 5543 8999999999655543 455667778999999999999976555443
No 19
>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]
Probab=96.53 E-value=2.8 Score=54.74 Aligned_cols=538 Identities=16% Similarity=0.158 Sum_probs=271.7
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhcC-CCCCCCCch--hH-HHHHHHHHhhcchhhhhhhhhhcccccCC--C--
Q 000609 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSG-DSRPGHSHI--DY-HEVIYDVYRCSPQILSGVVPYLTGELLTD--Q-- 275 (1393)
Q Consensus 204 ~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~-d~~~~~~~~--~~-h~Li~eL~~~~P~lL~~ViP~Le~eL~se--~-- 275 (1393)
..+.+-..++....+-+..++-..+..+++. .+.++.+.. .+ --+..-|-.+.|+...+-+|-|..-+.+- |
T Consensus 454 ~cf~lL~eli~~lp~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~~~Ls~~v~~aV~d~f 533 (1233)
T KOG1824|consen 454 GCFLLLTELINVLPGALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHLSALSPPVVAAVGDPF 533 (1233)
T ss_pred hHHHHHHHHHHhCcchhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccchhhhhhHHHHHhcCch
Confidence 5677777777777777766665555554432 112222222 22 23344445667777766665554433211 1
Q ss_pred hHHHHHHHHHHHHhhcC-----C--CCChhhhcHHHHHHHHhcc--cCCChhHHHHHHHHhHHHHhcCCC--CCChHHHH
Q 000609 276 LDTRLKAVGLVGDLFAV-----P--GSANNEQFHSVFSEFLKRL--TDRIVAVRMSVLEHVKSCLLTDPS--RADAPQIL 344 (1393)
Q Consensus 276 ~~~Rl~At~llG~mfs~-----~--~~~~~~~~~~~w~~fL~R~--~D~s~~VR~~~v~~~~~iL~~~p~--~~~~~ei~ 344 (1393)
-.+--.|..+.+++... + +.++.......|.+-++|+ +|.+-+||...+.+.++++.+-.+ +.+.+.++
T Consensus 534 yKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i~~fgD~l~~eL~~~L 613 (1233)
T KOG1824|consen 534 YKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQIIANFGDFLGNELPRTL 613 (1233)
T ss_pred HhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHhhhhhhhhHHHH
Confidence 22222333333333321 1 3445566678888888876 799999999999999998876543 34456778
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000609 345 TALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1393)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~ 420 (1393)
..|.+||. .|--|+.||+|++.++...++ .+-.+++..++.=+|--....|.+++..+-+|-..|...+.. ..
T Consensus 614 ~il~eRl~--nEiTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a~~~L~~~~~~~~~~-~~ 690 (1233)
T KOG1824|consen 614 PILLERLG--NEITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTALDKLVKNYSDSIPA-EL 690 (1233)
T ss_pred HHHHHHHh--chhHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccH-HH
Confidence 89999996 688899999999999875543 344567778887777666778888877777777776322110 01
Q ss_pred chhccccchHHHhhhhcccCCCch--hHHHHhhccCc--CCCCCHHHHHHHHHHHHh-----cCCHHHHHHHHHHHHHHH
Q 000609 421 NQNEFEWIPGKILRCLYDKDFGSD--TIESVLCGSLF--PTGFSVKDRVRHWVRIFS-----GFDRIEMKALEKILEQKQ 491 (1393)
Q Consensus 421 ~~~~~~wIP~~IL~~~Y~~d~~~~--lvE~vl~e~Ll--P~~~~~~~R~~~ll~l~~-----~lD~~~~kal~~il~~k~ 491 (1393)
...-++.||+-|- ..|.+.- .++- ..+++ |...-.+-+-..+-++.+ .+-..+..++..++..--
T Consensus 691 ~e~vL~el~~Lis----esdlhvt~~a~~~--L~tl~~~~ps~l~~~~~~iL~~ii~ll~Spllqg~al~~~l~~f~alV 764 (1233)
T KOG1824|consen 691 LEAVLVELPPLIS----ESDLHVTQLAVAF--LTTLAIIQPSSLLKISNPILDEIIRLLRSPLLQGGALSALLLFFQALV 764 (1233)
T ss_pred HHHHHHHhhhhhh----HHHHHHHHHHHHH--HHHHHhcccHHHHHHhhhhHHHHHHHhhCccccchHHHHHHHHHHHHH
Confidence 1112344444332 2232211 1221 11211 111001111111111111 111111222222211111
Q ss_pred HHHHH---HHHHHHHHhh-----hcCCCcHHHHHHHHHHHHHHHhhcCCchhH--HHHHHHHH--hhccH-HHHHHHHHH
Q 000609 492 RLQQE---MQRYLSLRQM-----HQDGDAPEIQKKILFCFRVMSRSFAEPAKA--EENFLILD--QLKDA-NVWKILMNL 558 (1393)
Q Consensus 492 ~l~~~---~~~~l~l~~~-----~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka--~~~L~kf~--klnD~-ri~klLk~~ 558 (1393)
.-+.. +-..+.+... ..++-....--.+.+|+..|...+|+-.++ ..-.+.|. +.+|. ++|-+|..=
T Consensus 765 ~t~~~~l~y~~l~s~lt~PV~~~~~~~l~kqa~~siA~cvA~Lt~~~~~~s~s~a~kl~~~~~s~~s~~~ikvfa~LslG 844 (1233)
T KOG1824|consen 765 ITKEPDLDYISLLSLLTAPVYEQVTDGLHKQAYYSIAKCVAALTCACPQKSKSLATKLIQDLQSPKSSDSIKVFALLSLG 844 (1233)
T ss_pred hcCCCCccHHHHHHHHcCCcccccccchhHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHhCCCCchhHHHHHHhhhh
Confidence 10000 1122222111 001112223334778889999999965554 33344444 33443 444433221
Q ss_pred -hc------CCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhccccc--hhHHHHHHHHHHhhcccchhhhHHHHH
Q 000609 559 -LD------SNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFN--KEHVKEILLEVAAQKSSANAQFMQSCM 629 (1393)
Q Consensus 559 -id------~~t~~~t~~~a~~ELlkrL~~~~~~~e~l~~Ll~R~S~li~N--ks~V~~LL~~~~~~~~~~~~~~~~~a~ 629 (1393)
++ |.-.|.+ -++.-++. |..|....-.|-...+-.+ ...+|.|++.+......+ ----|
T Consensus 845 Elgr~~~~s~~~e~~~------~iieaf~s--p~edvksAAs~ALGsl~vgnl~~yLpfil~qi~sqpk~Q----yLLLh 912 (1233)
T KOG1824|consen 845 ELGRRKDLSPQNELKD------TIIEAFNS--PSEDVKSAASYALGSLAVGNLPKYLPFILEQIESQPKRQ----YLLLH 912 (1233)
T ss_pred hhccCCCCCcchhhHH------HHHHHcCC--ChHHHHHHHHHHhhhhhcCchHhHHHHHHHHHhcchHhH----HHHHH
Confidence 11 1112221 12222222 2234444444444444441 235677777654321111 11235
Q ss_pred HHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCChHH---HHHH
Q 000609 630 DILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQ---AKYA 706 (1393)
Q Consensus 630 eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~q---AK~A 706 (1393)
-+...|+...+..|+..++.+-.+|...-+..-+++=-+++.|-|.+- -...+++.+.|+.+-..|.|.. +=-|
T Consensus 913 Slkevi~~~svd~~~~~v~~IW~lL~k~cE~~eegtR~vvAECLGkL~---l~epesLlpkL~~~~~S~a~~~rs~vvsa 989 (1233)
T KOG1824|consen 913 SLKEVIVSASVDGLKPYVEKIWALLFKHCECAEEGTRNVVAECLGKLV---LIEPESLLPKLKLLLRSEASNTRSSVVSA 989 (1233)
T ss_pred HHHHHHHHhccchhhhhHHHHHHHHHHhcccchhhhHHHHHHHhhhHH---hCChHHHHHHHHHHhcCCCcchhhhhhhe
Confidence 677888999999999999999999988555455566566666644322 1224578999988887776532 2223
Q ss_pred HHHHHhhcCCCccchHHHHHH-HHHHh---hhhcC-CC-chHHHHHHHHHhhcccccccchHHHHHHHH
Q 000609 707 VHALAAITKDDGLKSLSVLYK-RLVDM---LEEKT-HL-PAVLQSLGCIAQTAMPVFETRESEIEEFIK 769 (1393)
Q Consensus 707 v~~Laa~~~~~~~~~~~~L~~-~L~~~---L~~~~-~l-~t~L~sL~~Ia~~ap~vfe~~~~eI~~fii 769 (1393)
|+.. +++... .+..+.+ .|-+- +.+.+ +. -..|+++-..+.+-|....+--+++...++
T Consensus 990 vKfs--isd~p~--~id~~lk~~ig~fl~~~~dpDl~VrrvaLvv~nSaahNKpslIrDllpeLLp~Ly 1054 (1233)
T KOG1824|consen 990 VKFS--ISDQPQ--PIDPLLKQQIGDFLKLLRDPDLEVRRVALVVLNSAAHNKPSLIRDLLPELLPLLY 1054 (1233)
T ss_pred eeee--ecCCCC--ccCHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHccCHhHHHHHHHHHHHHHH
Confidence 3321 222222 1222222 22222 22222 11 224677777777777666665555544443
No 20
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=96.51 E-value=0.013 Score=78.49 Aligned_cols=120 Identities=23% Similarity=0.201 Sum_probs=89.6
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 342 (1393)
.++.|-..|..+++.+|..|++.||+.-. +.+.........|.++.||...++....+....+.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~----------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~~------ 685 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTP----------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLPP------ 685 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcc----------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccCc------
Confidence 55666677788999999999999998631 23445555666899999999999998776432221
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 343 ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 343 i~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
...|...|.|+|+.||.+|+.++..+.... . ..+...+.|+.+.||.+|+..|+.+
T Consensus 686 -~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-----~---~~l~~~L~D~d~~VR~~Av~aL~~~ 741 (897)
T PRK13800 686 -APALRDHLGSPDPVVRAAALDVLRALRAGD-----A---ALFAAALGDPDHRVRIEAVRALVSV 741 (897)
T ss_pred -hHHHHHHhcCCCHHHHHHHHHHHHhhccCC-----H---HHHHHHhcCCCHHHHHHHHHHHhcc
Confidence 235666778899999999999888654211 1 2346688999999999999999974
No 21
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.43 E-value=4.5 Score=51.28 Aligned_cols=369 Identities=17% Similarity=0.196 Sum_probs=203.1
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-hhhhcHHHHHHHHhcccCCChhHHHH-
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-NNEQFHSVFSEFLKRLTDRIVAVRMS- 322 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~-~~~~~~~~w~~fL~R~~D~s~~VR~~- 322 (1393)
+.+++-.+|+- ++|.-++|.|.+-|.+++=.+|-.++=.||-|--+ .-+ |..--|.+.--++.-..|+.|-||..
T Consensus 378 aLDVLanvf~~--elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEG-cM~g~~p~LpeLip~l~~~L~DKkplVRsIT 454 (885)
T KOG2023|consen 378 ALDVLANVFGD--ELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEG-CMQGFVPHLPELIPFLLSLLDDKKPLVRSIT 454 (885)
T ss_pred HHHHHHHhhHH--HHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHH-HhhhcccchHHHHHHHHHHhccCccceeeee
Confidence 45666666653 67777899999999999999999999999977654 223 44445788888889999999999963
Q ss_pred -H--HHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh-cCCCCH--HHHHHH---HHhhccCC
Q 000609 323 -V--LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPV--ETVKLV---AERLRDKS 393 (1393)
Q Consensus 323 -~--v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~v~~--e~L~~l---~eR~rDKK 393 (1393)
| -.+++.++.-+++ .--..++.+|..|++|..-+|--|||.+++.+...+ -+.||. .+|.++ ...-.-|+
T Consensus 455 CWTLsRys~wv~~~~~~-~~f~pvL~~ll~~llD~NK~VQEAAcsAfAtleE~A~~eLVp~l~~IL~~l~~af~kYQ~KN 533 (885)
T KOG2023|consen 455 CWTLSRYSKWVVQDSRD-EYFKPVLEGLLRRLLDSNKKVQEAACSAFATLEEEAGEELVPYLEYILDQLVFAFGKYQKKN 533 (885)
T ss_pred eeeHhhhhhhHhcCChH-hhhHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhhcc
Confidence 2 3455555544332 223467889999999999999999999999887644 445553 122221 23334455
Q ss_pred hhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhh--hhcccCCC-------chhHHHHhhccCcCCCCCHHHH
Q 000609 394 VLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILR--CLYDKDFG-------SDTIESVLCGSLFPTGFSVKDR 464 (1393)
Q Consensus 394 ~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~--~~Y~~d~~-------~~lvE~vl~e~LlP~~~~~~~R 464 (1393)
..|==.||-+||.--..+..+..- .+. -||--|=. ..-+.|.+ ...|-..|-..++|+--++=+|
T Consensus 534 LlILYDAIgtlAdsvg~~Ln~~~Y----iqi--LmPPLi~KW~~lsd~DKdLfPLLEClSsia~AL~~gF~P~~~~Vy~R 607 (885)
T KOG2023|consen 534 LLILYDAIGTLADSVGHALNKPAY----IQI--LMPPLIEKWELLSDSDKDLFPLLECLSSIASALGVGFLPYAQPVYQR 607 (885)
T ss_pred eehHHHHHHHHHHHHHHhcCcHHH----HHH--hccHHHHHHHhcCcccchHHHHHHHHHHHHHHHhccccccCHHHHHH
Confidence 666667777777665544322110 000 11221111 11122222 0146666777788887777777
Q ss_pred HHHHHH--HH----hcCCHHH--------HHHHHHHHHHHHHHHHHHHHHH------HH-HhhhcCCCcHHHHHHHHHHH
Q 000609 465 VRHWVR--IF----SGFDRIE--------MKALEKILEQKQRLQQEMQRYL------SL-RQMHQDGDAPEIQKKILFCF 523 (1393)
Q Consensus 465 ~~~ll~--l~----~~lD~~~--------~kal~~il~~k~~l~~~~~~~l------~l-~~~~~~~d~~ei~~kl~~~i 523 (1393)
.-++++ +. .+-|+.- +-+|.-+.+.-+.+-..+..++ ++ .+..++ ..|++.+.--..+
T Consensus 608 c~~il~~t~q~~~~~~~~~~~~~pdkdfiI~sLDL~SGLaegLg~~ie~Lva~snl~~lll~C~~D-~~peVRQS~FALL 686 (885)
T KOG2023|consen 608 CFRILQKTLQLLAKVQQDPTVEAPDKDFIIVSLDLLSGLAEGLGSHIEPLVAQSNLLDLLLQCLQD-EVPEVRQSAFALL 686 (885)
T ss_pred HHHHHHHHHHHHHhccCCccccCCCcceEEEeHHHHhHHHHHhhhchHHHhhhccHHHHHHHHhcc-CChHHHHHHHHHH
Confidence 655553 11 0111100 0111122222222222222211 11 111222 4566654322222
Q ss_pred HHHHhhcCCchhHHHHHHHHHhhccHHHHHHHHHHhcCC--CCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhcccc
Q 000609 524 RVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSN--TSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLF 601 (1393)
Q Consensus 524 ~~Ls~~fpDp~Ka~~~L~kf~klnD~ri~klLk~~id~~--t~~~t~~~a~~ELlkrL~~~~~~~e~l~~Ll~R~S~li~ 601 (1393)
--|.+++++..+. +=..++.+|..-.+|+ +-+..+.-|.-|+--|+|.+. +.+++.++++.-. ++
T Consensus 687 GDltk~c~~~v~p----------~~~~fl~~lg~Nl~~~~isv~nNA~WAiGeia~k~g~~~--~~~v~~vl~~L~~-ii 753 (885)
T KOG2023|consen 687 GDLTKACFEHVIP----------NLADFLPILGANLNPENISVCNNAIWAIGEIALKMGLKM--KQYVSPVLEDLIT-II 753 (885)
T ss_pred HHHHHHHHHhccc----------hHHHHHHHHhhcCChhhchHHHHHHHHHHHHHHHhchhh--hhHHHHHHHHHHH-Hh
Confidence 2333443333322 1122344444444554 345666667888888888663 2467776665543 33
Q ss_pred chhHHH-HHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHH
Q 000609 602 NKEHVK-EILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVN 652 (1393)
Q Consensus 602 Nks~V~-~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~ 652 (1393)
|+.+.+ ++++.. | --+..+..++|+++..|.+..++
T Consensus 754 n~~~~~~tllENt--------------A-ITIGrLg~~~Pe~vAp~l~~f~~ 790 (885)
T KOG2023|consen 754 NRQNTPKTLLENT--------------A-ITIGRLGYICPEEVAPHLDSFMR 790 (885)
T ss_pred cccCchHHHHHhh--------------h-hhhhhhhccCHHhcchhHHHHHH
Confidence 444444 333311 1 11234677999999998766543
No 22
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.31 E-value=4 Score=50.89 Aligned_cols=415 Identities=15% Similarity=0.159 Sum_probs=223.4
Q ss_pred HHHHHHHHh-hhhhhHHHHHHHHHhhcCCCC-CCCCch-----hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHH
Q 000609 208 LAMNVIEQC-AGKLEAGIKQFLVSSMSGDSR-PGHSHI-----DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1393)
Q Consensus 208 lA~~vi~~~-~dkl~~~i~q~f~~~l~~d~~-~~~~~~-----~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl 280 (1393)
+.+++.+++ .+++...|.+...+.++..+. ..+.++ -++-+=.+--.+.-.++.+|++. +...|..+|-
T Consensus 27 ~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~~Y~~~iv~Pv~~c----f~D~d~~vRy 102 (675)
T KOG0212|consen 27 LVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDAGYLEKIVPPVLNC----FSDQDSQVRY 102 (675)
T ss_pred HHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccHHHHHHhhHHHHHh----ccCccceeee
Confidence 334443332 356777777777666553221 111111 12222222222333444555555 4447888999
Q ss_pred HHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHH---HHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhH
Q 000609 281 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV---LEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1393)
Q Consensus 281 ~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~---v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~Dek 357 (1393)
=|.+.+=.+-..-..++..-++.+|....+=+.|.+..||-.. -...++|.....+.-..+++++-|.+|+.+.+.-
T Consensus 103 yACEsLYNiaKv~k~~v~~~Fn~iFdvL~klsaDsd~~V~~~aeLLdRLikdIVte~~~tFsL~~~ipLL~eriy~~n~~ 182 (675)
T KOG0212|consen 103 YACESLYNIAKVAKGEVLVYFNEIFDVLCKLSADSDQNVRGGAELLDRLIKDIVTESASTFSLPEFIPLLRERIYVINPM 182 (675)
T ss_pred HhHHHHHHHHHHhccCcccchHHHHHHHHHHhcCCccccccHHHHHHHHHHHhccccccccCHHHHHHHHHHHHhcCCch
Confidence 9988877666544456778889999999999999999998543 2334444443332223568999999999999999
Q ss_pred HHHHHHHHHHHhhhh-hcCCC--CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccC-C-----Cc------c-
Q 000609 358 VRKQVVAVICDVACH-ALNSI--PVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFN-G-----SI------N- 421 (1393)
Q Consensus 358 VR~aaV~ai~~la~~-~l~~v--~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~-~-----~~------~- 421 (1393)
+|..+|.-+.-+... .++-+ -.+++.-+-.=+-|-..+||.-+=..|+.+-+....+.+. + .. .
T Consensus 183 tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss 262 (675)
T KOG0212|consen 183 TRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSS 262 (675)
T ss_pred HHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCC
Confidence 999999887755431 11111 1245555566678999999999999999988876543221 0 00 0
Q ss_pred -----hhccccchHHHhhhhcccCCCch-hHHHHhhccCcCCCCCHHHH----HHHHHH--HHhcCCHHHHH---HHHHH
Q 000609 422 -----QNEFEWIPGKILRCLYDKDFGSD-TIESVLCGSLFPTGFSVKDR----VRHWVR--IFSGFDRIEMK---ALEKI 486 (1393)
Q Consensus 422 -----~~~~~wIP~~IL~~~Y~~d~~~~-lvE~vl~e~LlP~~~~~~~R----~~~ll~--l~~~lD~~~~k---al~~i 486 (1393)
...+-||-.- .++.....- ..-. +++.++|.-.+.++. ....+. +.+-++....+ .+..
T Consensus 263 ~~~iq~~al~Wi~ef----V~i~g~~~l~~~s~-il~~iLpc~s~~e~~~i~~~a~~~n~~l~~l~s~~~~~~~id~~~- 336 (675)
T KOG0212|consen 263 EPEIQLKALTWIQEF----VKIPGRDLLLYLSG-ILTAILPCLSDTEEMSIKEYAQMVNGLLLKLVSSERLKEEIDYGS- 336 (675)
T ss_pred cHHHHHHHHHHHHHH----hcCCCcchhhhhhh-hhhhcccCCCCCccccHHHHHHHHHHHHHHHHhhhhhccccchHH-
Confidence 0113344111 111111100 1222 355688875444332 222222 12212221111 1111
Q ss_pred HHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHH---hhcCCchhHHHH--HH-HHHhhccH------HHHHH
Q 000609 487 LEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMS---RSFAEPAKAEEN--FL-ILDQLKDA------NVWKI 554 (1393)
Q Consensus 487 l~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls---~~fpDp~Ka~~~--L~-kf~klnD~------ri~kl 554 (1393)
+-..+++|+.- |. +.+++. +.+|+. ..+|...-...+ +. -+..+-|+ +..-+
T Consensus 337 ------ii~vl~~~l~~-------~~--~~tri~-~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tLsd~sd~vvl~~L~l 400 (675)
T KOG0212|consen 337 ------IIEVLTKYLSD-------DR--EETRIA-VLNWIILLYHKAPGQLLVHNDSIFLTLLKTLSDRSDEVVLLALSL 400 (675)
T ss_pred ------HHHHHHHHhhc-------ch--HHHHHH-HHHHHHHHHhhCcchhhhhccHHHHHHHHhhcCchhHHHHHHHHH
Confidence 11223333321 21 222332 345553 444443322111 11 11122222 12223
Q ss_pred HHHHhcCCCCHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhHHHHHHHHHH
Q 000609 555 LMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGI 634 (1393)
Q Consensus 555 Lk~~id~~t~~~t~~~a~~ELlkrL~~~~~~~e~l~~Ll~R~S~li~Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~ 634 (1393)
+..++....++ ..++....|+.+-.+...+.+.--.|..|.-++..|.|+|=.-+..+-.. ..|-.+.+..-+.|+.
T Consensus 401 la~i~~s~~~~-~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~aE~IYr~~a~ILe~--e~nl~FAstMV~~Ln~ 477 (675)
T KOG0212|consen 401 LASICSSSNSP-NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLNAERIYRSIADILER--EENLKFASTMVQALNT 477 (675)
T ss_pred HHHHhcCcccc-cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhCHHHHHHHHHHHHhc--cccchHHHHHHHHHHh
Confidence 33333333332 22445555666555555455666678899999999999997766654332 3344577778899999
Q ss_pred HHhhCCcCccccHHHHHHHHhh
Q 000609 635 LARFSPLLLGGTEEELVNLLKE 656 (1393)
Q Consensus 635 IS~~~P~lFk~~~~~L~~lL~~ 656 (1393)
|--+.|++|. |-+.|++
T Consensus 478 iLlTStELf~-----LR~~Lk~ 494 (675)
T KOG0212|consen 478 ILLTSTELFQ-----LRNKLKD 494 (675)
T ss_pred hhcccHHHHH-----HHHHHHh
Confidence 9999999995 5566664
No 23
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.29 E-value=0.47 Score=59.87 Aligned_cols=242 Identities=19% Similarity=0.271 Sum_probs=153.8
Q ss_pred hhhHHHHHHHHHHHHhccccc-----ccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHH--------HHHHHH
Q 000609 164 PESVLSSMQTIMIVLLEESED-----IQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGI--------KQFLVS 230 (1393)
Q Consensus 164 ~~~v~~~m~~IL~~vI~Ese~-----vp~~vLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkl~~~i--------~q~f~~ 230 (1393)
.+.|.......+..++.+.+. +..+++..|+..+..... .....|.+++...+.. ...+ ..-+.+
T Consensus 90 ~~~Vr~l~l~~l~~~~~~~~~~~~~~~~~~l~~~i~~~L~~~d~-~Va~~A~~~L~~l~~~-~~~~~~l~~~~~~~~L~~ 167 (503)
T PF10508_consen 90 SPKVRRLALKQLGRIARHSEGAAQLLVDNELLPLIIQCLRDPDL-SVAKAAIKALKKLASH-PEGLEQLFDSNLLSKLKS 167 (503)
T ss_pred CHHHHHHHHHHHHHHhcCCHHHHHHhcCccHHHHHHHHHcCCcH-HHHHHHHHHHHHHhCC-chhHHHHhCcchHHHHHH
Confidence 346777767777777776655 556777777777754433 3334444444433321 1222 222333
Q ss_pred hhcCCCCCCCCchhHHHHHHHHHhhcchhhhh-----hhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHH
Q 000609 231 SMSGDSRPGHSHIDYHEVIYDVYRCSPQILSG-----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSV 304 (1393)
Q Consensus 231 ~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~-----ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~~~~~~~~~~ 304 (1393)
++... ......++++++.+|.+..|+.+.. +++.+..+|.++|+-+|+.|++++++|-..+ |..+..+ ..+
T Consensus 168 l~~~~--~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~-~gi 244 (503)
T PF10508_consen 168 LMSQS--SDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQ-QGI 244 (503)
T ss_pred HHhcc--CHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHh-CCH
Confidence 33221 1123457999999999999988765 5689999999999999999999999998855 3333322 234
Q ss_pred HHHHHhcc----cCC-ChhHHH-HHHHHhHHHHhcCCCC--CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh---
Q 000609 305 FSEFLKRL----TDR-IVAVRM-SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA--- 373 (1393)
Q Consensus 305 w~~fL~R~----~D~-s~~VR~-~~v~~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~--- 373 (1393)
+....... .|. ...+.+ .-+++.+.+...+|.. ...+.++..|.+.+...|...|..|+.+++.++...
T Consensus 245 ~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~ 324 (503)
T PF10508_consen 245 FDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLELYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGK 324 (503)
T ss_pred HHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHH
Confidence 44444443 333 222221 1225555544434421 122456666666677899999999999999987522
Q ss_pred --c-CCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 374 --L-NSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 374 --l-~~v~~---e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
+ ..-+. .+++.++++.+.-+..+|..|+..|+.++..
T Consensus 325 ~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~ 367 (503)
T PF10508_consen 325 QLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTS 367 (503)
T ss_pred HHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhc
Confidence 3 11122 3588999999999999999999999999964
No 24
>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells. 26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding
Probab=96.13 E-value=2.2 Score=53.87 Aligned_cols=131 Identities=21% Similarity=0.206 Sum_probs=88.2
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC-ChhHHHHHHHHhHHHHhcCCCCCCh-
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDPSRADA- 340 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~-s~~VR~~~v~~~~~iL~~~p~~~~~- 340 (1393)
++|.|-.-|..+|..+-..|.++|.++.+.+. .+..-+++....=|...... +..||.-+.+.+..+-..++.....
T Consensus 120 l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~-~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~ 198 (503)
T PF10508_consen 120 LLPLIIQCLRDPDLSVAKAAIKALKKLASHPE-GLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAV 198 (503)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHhCCch-hHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence 45566666788999999999999999998653 33333222224445555555 6689999999998876655532111
Q ss_pred --HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh--cCC-CCHHHHHHHHHhhccCCh
Q 000609 341 --PQILTALCDRLLDFDENVRKQVVAVICDVACHA--LNS-IPVETVKLVAERLRDKSV 394 (1393)
Q Consensus 341 --~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~--l~~-v~~e~L~~l~eR~rDKK~ 394 (1393)
+.+++.+...|.|.|.-||+.+++.+.++|... ... +...++..+...+.+-+.
T Consensus 199 ~~sgll~~ll~eL~~dDiLvqlnalell~~La~~~~g~~yL~~~gi~~~L~~~l~~~~~ 257 (503)
T PF10508_consen 199 VNSGLLDLLLKELDSDDILVQLNALELLSELAETPHGLQYLEQQGIFDKLSNLLQDSEE 257 (503)
T ss_pred HhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcChhHHHHHHhCCHHHHHHHHHhcccc
Confidence 137788888899999999999999999998722 221 122345555555554443
No 25
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.11 E-value=8.9 Score=51.59 Aligned_cols=440 Identities=19% Similarity=0.191 Sum_probs=220.6
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC--CCChhhhcHHHHHHHHhcccCCChhHHHH
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP--GSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~--~~~~~~~~~~~w~~fL~R~~D~s~~VR~~ 322 (1393)
.-..+.++-..+|.++..=+..|-.-|..+.-..|-..++.+|.+-..- +.+...
T Consensus 295 v~~fL~elS~~~P~l~~~~l~~lv~lld~es~~lRnavlei~~n~V~~~l~d~e~~~----------------------- 351 (1251)
T KOG0414|consen 295 VGNFLVELSERVPKLMLRQLTLLVDLLDSESYTLRNAVLEICANLVASELRDEELEE----------------------- 351 (1251)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhcchhhhH-----------------------
Confidence 4568899999999999998888888899999999999999999987642 111111
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCC----HHHHHHHHHhhccCChhHHH
Q 000609 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP----VETVKLVAERLRDKSVLVKR 398 (1393)
Q Consensus 323 ~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~----~e~L~~l~eR~rDKK~~VR~ 398 (1393)
+.+... .++++.|.+|+.|.-.-||..|.+++..+-.. +.+| .+++..++.|+-||..-||+
T Consensus 352 ~sk~~r------------~~~le~l~erl~Dvsa~vRskVLqv~~~l~~~--~s~p~~~~~eV~~la~grl~DkSslVRk 417 (1251)
T KOG0414|consen 352 MSKSLR------------DELLELLRERLLDVSAYVRSKVLQVFRRLFQQ--HSIPLGSRTEVLELAIGRLEDKSSLVRK 417 (1251)
T ss_pred HHHHHH------------HHHHHHHHHHhhcccHHHHHHHHHHHHHHHHc--cCCCccHHHHHHHHHhcccccccHHHHH
Confidence 111111 13444555555555555555555555543321 1222 23455556666666666666
Q ss_pred HHHHHHHHHHHHh------------------hhhccC--CCcchhccccchHHHhhhhcccCCCchhHHHHhhccCcCCC
Q 000609 399 YTMERLADIFRGC------------------CLRNFN--GSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1393)
Q Consensus 399 eAm~~La~lY~~~------------------~~~~~~--~~~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~ 458 (1393)
.||..+..+-..+ ....+. .+...-.=..+++--.. -|..-.. .++..-+.+--|..
T Consensus 418 ~Ai~Ll~~~L~~~Pfs~~~~~~~~~~~~E~~~~~~e~~~e~t~~l~~e~~~~~~s~-n~~~vi~--~~~~~~~~~~~q~~ 494 (1251)
T KOG0414|consen 418 NAIQLLSSLLDRHPFSSELRSDDLRAKLEKELQKLEEELESTEHLEEEEMTSNRSE-NVKGVIE--DAEKDSTTEKNQLE 494 (1251)
T ss_pred HHHHHHHHHHhcCCchhhhcchhhhhhHHHHHHhhhhhcccccccchhhccchhhh-hccccee--echhhhhhhccccc
Confidence 6666666654432 221110 00000000000000000 0000000 00000000011111
Q ss_pred CCHHH-HHH-HHHHHHhcCCHH----HHHHHHHHHHHHHHHHHHHHHHHHHH-hhhcCCCcHHHHHHHHHHHHHHHhhcC
Q 000609 459 FSVKD-RVR-HWVRIFSGFDRI----EMKALEKILEQKQRLQQEMQRYLSLR-QMHQDGDAPEIQKKILFCFRVMSRSFA 531 (1393)
Q Consensus 459 ~~~~~-R~~-~ll~l~~~lD~~----~~kal~~il~~k~~l~~~~~~~l~l~-~~~~~~d~~ei~~kl~~~i~~Ls~~fp 531 (1393)
..... -.. .+..-....+.. ..+++.+++...-+....|.+-+... +..-++...+|+..|... .++..|
T Consensus 495 ss~~~~~e~~~~~~~~~s~~~~~~i~q~~~~vq~l~d~~sf~~~ms~~~~ii~~ll~s~t~teV~E~Idfl--~~c~~F- 571 (1251)
T KOG0414|consen 495 SSDNKQEEHCLLENEVESVPAENEIMQLKALVQFLEDAISFSDEMSEAIPIISQLLFSKTTTEVKEAIDFL--VRCKQF- 571 (1251)
T ss_pred cccccchhhhhhhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHH--HHHHHh-
Confidence 00000 000 000101111111 11233333333334444444433331 222244566777776644 334555
Q ss_pred CchhHHHHHHHHHhh---ccHHHHHHHHHH-------hcCCCCHHHHHHHHHHHHHHhcC-----CCChHHHHHHHHHhh
Q 000609 532 EPAKAEENFLILDQL---KDANVWKILMNL-------LDSNTSFDQAFTGRDDLLKILGA-----KHRLYDFLSTLSMKC 596 (1393)
Q Consensus 532 Dp~Ka~~~L~kf~kl---nD~ri~klLk~~-------id~~t~~~t~~~a~~ELlkrL~~-----~~~~~e~l~~Ll~R~ 596 (1393)
+..-|+.++++.-.| +|..++.++..| .+++..-.+.....+-|++.+-+ .+++-+.+..|..
T Consensus 572 ~I~gae~~irkMl~LVWskd~~i~e~v~~ayk~l~~~~~~n~~~~e~~~ia~NL~~l~~~~s~~d~~slE~vl~~lv~-- 649 (1251)
T KOG0414|consen 572 GIDGAEFGIRKMLPLVWSKDKEIREAVENAYKQLYFRPDGNSKASEASSIAQNLSKLLIDASIGDLTSLEEVLCELVA-- 649 (1251)
T ss_pred CCCcHHHHHHHHhhhhhCCCccHHHHHHHHHHHHhccCCCCchhhHHHHHHHHHHHHHhcccccchhhHHHHHHHHHh--
Confidence 445566677766654 676666665555 34455555543333444444322 2333333333333
Q ss_pred hccccchhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhc-c
Q 000609 597 SYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG-T 675 (1393)
Q Consensus 597 S~li~Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k-~ 675 (1393)
--.++..-|..|.......+.+......--++.+|-++|...|++-..+.+.|+++=-. .+.....+|..++.++- .
T Consensus 650 -~~~Id~~Vi~~Lw~~ftlq~~~~~~~q~~~sl~iL~M~s~s~~~Iv~~~~~~lv~iglg-~p~l~~~~L~~~s~i~~~r 727 (1251)
T KOG0414|consen 650 -RGYIDAAVINKLWEIFTLQKKGTTNEQSRGSLIILGMASRSKPSIVLANLDLLVQIGLG-EPRLAVDVLARYSNIVDPR 727 (1251)
T ss_pred -CCCccHHHHHHHHHHHHHHhccCchhhhccceeehhhhhccChhhhhhhhHHHHHhccC-cHHHHHHHHHHHHHhhccc
Confidence 45788888888998764433333211223467899999999999999998887766333 34455667777765541 1
Q ss_pred hHh----h--h-hcccchHHHHHHHHhhcCCh-------HHHHHHHHHHHhhcCCCccchHHHHHHHHHHh
Q 000609 676 IRE----Q--L-AATSSSVDLLLERLCLEGSR-------RQAKYAVHALAAITKDDGLKSLSVLYKRLVDM 732 (1393)
Q Consensus 676 ~~e----~--~-~~~~s~l~~~L~~lal~Gtp-------~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~~~ 732 (1393)
..+ . + .+....+...|+.+-..|-+ .-|-.|+.+|..+...++. ....|+..+.++
T Consensus 728 ~~~~~~~r~~f~~~~~~~L~k~L~~l~~~~~~~~d~~~~~~~e~ais~Iy~is~~Pe~-la~~li~~~~~~ 797 (1251)
T KOG0414|consen 728 KLEDAYSRPKFNLEQEEVLFKILEKLLFFEFMKADDDWFGVAEVAISAIYSISMLPEV-LATQLIRKLLKQ 797 (1251)
T ss_pred ccchhhccccccCchHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHHHHHHhcChHH-HHHHHHHHHHHH
Confidence 110 0 0 12234677778877776421 5567788888877775542 222344444443
No 26
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=95.98 E-value=1.5 Score=54.97 Aligned_cols=231 Identities=16% Similarity=0.177 Sum_probs=146.3
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCC---
Q 000609 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP--- 378 (1393)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~--- 378 (1393)
.+++-.-|..|.|+.+.||-+...+++.++..-+.. -...++..+..-+.+.-++=-.++++.++-++......++
T Consensus 215 v~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~~-aVK~llpsll~~l~~~kWrtK~aslellg~m~~~ap~qLs~~l 293 (569)
T KOG1242|consen 215 VPILPSILTNFGDKINKVREAAVEAAKAIMRCLSAY-AVKLLLPSLLGSLLEAKWRTKMASLELLGAMADCAPKQLSLCL 293 (569)
T ss_pred HhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCcc-hhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHhchHHHHHHH
Confidence 556666777788999999999999888766543322 2356777777777777777778888888877765554443
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCC-chhHHHHhhccCcCC
Q 000609 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-SDTIESVLCGSLFPT 457 (1393)
Q Consensus 379 ~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~-~~lvE~vl~e~LlP~ 457 (1393)
.+++..+.+.|-|-|+.||+.+++.|-++=... ++ ..+.-|=.++++|+-++.-+ .+.++.+...
T Consensus 294 p~iiP~lsevl~DT~~evr~a~~~~l~~~~svi-----dN----~dI~~~ip~Lld~l~dp~~~~~e~~~~L~~t----- 359 (569)
T KOG1242|consen 294 PDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI-----DN----PDIQKIIPTLLDALADPSCYTPECLDSLGAT----- 359 (569)
T ss_pred hHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh-----cc----HHHHHHHHHHHHHhcCcccchHHHHHhhcce-----
Confidence 356778999999999999999999998876542 11 12334455677776443311 2344444333
Q ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchhHH
Q 000609 458 GFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAE 537 (1393)
Q Consensus 458 ~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~ 537 (1393)
++..+.|+.+..-+--|+.+.-. - -+..++++...+|..+++..+||....
T Consensus 360 ------------tFV~~V~~psLalmvpiL~R~l~----------e-------Rst~~kr~t~~IidNm~~LveDp~~la 410 (569)
T KOG1242|consen 360 ------------TFVAEVDAPSLALMVPILKRGLA----------E-------RSTSIKRKTAIIIDNMCKLVEDPKDLA 410 (569)
T ss_pred ------------eeeeeecchhHHHHHHHHHHHHh----------h-------ccchhhhhHHHHHHHHHHhhcCHHHHh
Confidence 33355566544333333332211 0 122355666677888888888988877
Q ss_pred HHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCC
Q 000609 538 ENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAK 582 (1393)
Q Consensus 538 ~~L~kf~klnD~ri~klLk~~id~~t~~~t~~~a~~ELlkrL~~~ 582 (1393)
..|..+. +.+...+.+. .|++.+ .+.++.-.+++++|+.
T Consensus 411 pfl~~Ll----p~lk~~~~d~-~PEvR~-vaarAL~~l~e~~g~~ 449 (569)
T KOG1242|consen 411 PFLPSLL----PGLKENLDDA-VPEVRA-VAARALGALLERLGEV 449 (569)
T ss_pred hhHHHHh----hHHHHHhcCC-ChhHHH-HHHHHHHHHHHHHHhh
Confidence 7666655 3444455555 566655 3345666777777765
No 27
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=95.86 E-value=0.086 Score=58.88 Aligned_cols=146 Identities=18% Similarity=0.154 Sum_probs=104.6
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000609 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1393)
Q Consensus 264 iP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei 343 (1393)
++.+...+.+..-.+-..|..+++.|+..-+..|......+....|++..|....||.....+...++.+-+.. +.+
T Consensus 55 ~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~---~~~ 131 (228)
T PF12348_consen 55 LDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCSYS---PKI 131 (228)
T ss_dssp -HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-----HH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH---HHH
Confidence 34555556666677888899999999987776776667888889999999999999999999999887755411 245
Q ss_pred -HHHHHHHhCCchhHHHHHHHHHHHHhhhhhc---CCCC-----HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 344 -LTALCDRLLDFDENVRKQVVAVICDVACHAL---NSIP-----VETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 344 -~~~L~~rL~D~DekVR~aaV~ai~~la~~~l---~~v~-----~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
...+..-+.+-...||..++..+..+..... ..+. ..+...+..-+.|.++.||+.|-..+..+|+.+-
T Consensus 132 ~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~~ 209 (228)
T PF12348_consen 132 LLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQKSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHFP 209 (228)
T ss_dssp HHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG--HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhcccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCC
Confidence 7888888999999999999998887655333 2222 3467899999999999999999999999999764
No 28
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=95.74 E-value=12 Score=54.09 Aligned_cols=372 Identities=16% Similarity=0.115 Sum_probs=181.8
Q ss_pred CChhHHHHHHHHhHHHHhcCCCCC---ChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHH
Q 000609 315 RIVAVRMSVLEHVKSCLLTDPSRA---DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVETVKLVAE 387 (1393)
Q Consensus 315 ~s~~VR~~~v~~~~~iL~~~p~~~---~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~v~~e~L~~l~e 387 (1393)
.+.+++...+.+..++...+.+.- .....++.|.+.|...++.+|..++.+++-++..+-. .+....+..|.+
T Consensus 416 ~~~evQ~~Av~aL~~L~~~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~ndenr~aIieaGaIP~LV~ 495 (2102)
T PLN03200 416 ATADVQEELIRALSSLCCGKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEVDESKWAITAAGGIPPLVQ 495 (2102)
T ss_pred CCHHHHHHHHHHHHHHhCCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHH
Confidence 347899999999877554332210 0012457888889889999999999999888753221 123344667788
Q ss_pred hhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCCchhHHHHhhccCcCCCCCHHHHHHH
Q 000609 388 RLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH 467 (1393)
Q Consensus 388 R~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~~~~~~R~~~ 467 (1393)
.++..+..+|++|...|+++=... .+.......-+-||. +++.+-..+.+ .. +.=+..
T Consensus 496 LL~s~~~~iqeeAawAL~NLa~~~----~qir~iV~~aGAIpp-LV~LL~sgd~~--~q---------------~~Aa~A 553 (2102)
T PLN03200 496 LLETGSQKAKEDSATVLWNLCCHS----EDIRACVESAGAVPA-LLWLLKNGGPK--GQ---------------EIAAKT 553 (2102)
T ss_pred HHcCCCHHHHHHHHHHHHHHhCCc----HHHHHHHHHCCCHHH-HHHHHhCCCHH--HH---------------HHHHHH
Confidence 888889999999999998874310 000011122355554 55544222211 00 001122
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhc
Q 000609 468 WVRIFSGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLK 547 (1393)
Q Consensus 468 ll~l~~~lD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~kln 547 (1393)
+.++..+-|.... ..++++. . ++.+.++...-..+..|...-....-..+. . -
T Consensus 554 L~nLi~~~d~~~I-----------------~~Lv~LL---l-sdd~~~~~~aL~vLgnIlsl~~~~d~~~~g----~--~ 606 (2102)
T PLN03200 554 LTKLVRTADAATI-----------------SQLTALL---L-GDLPESKVHVLDVLGHVLSVASLEDLVREG----S--A 606 (2102)
T ss_pred HHHHHhccchhHH-----------------HHHHHHh---c-CCChhHHHHHHHHHHHHHhhcchhHHHHHh----h--h
Confidence 2233222232211 1222221 1 122233322222222221111000000000 0 0
Q ss_pred cHHHHHHHHHHhcCCC--CHHHHHHHHHHHHHHhcCCCChHHHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhH
Q 000609 548 DANVWKILMNLLDSNT--SFDQAFTGRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFM 625 (1393)
Q Consensus 548 D~ri~klLk~~id~~t--~~~t~~~a~~ELlkrL~~~~~~~e~l~~Ll~R~S~li~Nks~V~~LL~~~~~~~~~~~~~~~ 625 (1393)
+......|-.+...++ .++.+. .++-.+-..+ .+.. ..++....|+-|+..+... +.....
T Consensus 607 ~~ggL~~Lv~LL~sgs~~ikk~Aa----~iLsnL~a~~--~d~~--------~avv~agaIpPLV~LLss~---~~~v~k 669 (2102)
T PLN03200 607 ANDALRTLIQLLSSSKEETQEKAA----SVLADIFSSR--QDLC--------ESLATDEIINPCIKLLTNN---TEAVAT 669 (2102)
T ss_pred ccccHHHHHHHHcCCCHHHHHHHH----HHHHHHhcCC--hHHH--------HHHHHcCCHHHHHHHHhcC---ChHHHH
Confidence 0011111222222211 111111 1111111100 0111 1134445577777766432 111233
Q ss_pred HHHHHHHHHHHhhCCc-----CccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCCh
Q 000609 626 QSCMDILGILARFSPL-----LLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR 700 (1393)
Q Consensus 626 ~~a~eLL~~IS~~~P~-----lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp 700 (1393)
+.|..|....+...+. +=.+.+..|+++|...+..+++.++.+|+.+...-............+.|.++-.+|++
T Consensus 670 eAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr~G~~ 749 (2102)
T PLN03200 670 QSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLREGTL 749 (2102)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHHhCCh
Confidence 3444444444322222 11456899999999988788899999999876532111111234568899999999999
Q ss_pred HHHHHHHHHHHhhcCCCccch-H------HHHHHHHHHhhhhcC--CCch--HHHHHHHHHhh
Q 000609 701 RQAKYAVHALAAITKDDGLKS-L------SVLYKRLVDMLEEKT--HLPA--VLQSLGCIAQT 752 (1393)
Q Consensus 701 ~qAK~Av~~Laa~~~~~~~~~-~------~~L~~~L~~~L~~~~--~l~t--~L~sL~~Ia~~ 752 (1393)
+.=++|+.+|..++....... + .-.+..+++.|+..+ +..+ .|..|+-+++.
T Consensus 750 ~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~l~~~ 812 (2102)
T PLN03200 750 EGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALALLART 812 (2102)
T ss_pred HHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHHHHhh
Confidence 999999999987775432111 1 112345555565322 3333 56677777764
No 29
>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A.
Probab=95.50 E-value=0.045 Score=51.41 Aligned_cols=86 Identities=23% Similarity=0.232 Sum_probs=65.2
Q ss_pred hhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000609 264 VPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1393)
Q Consensus 264 iP~Le~eL-~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 342 (1393)
||.|-..| ..++..+|..|+.++|++- .+.+...++..+.|.++.||.+.+...+.+ - ..+
T Consensus 1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~i-~-------~~~ 62 (88)
T PF13646_consen 1 IPALLQLLQNDPDPQVRAEAARALGELG----------DPEAIPALIELLKDEDPMVRRAAARALGRI-G-------DPE 62 (88)
T ss_dssp HHHHHHHHHTSSSHHHHHHHHHHHHCCT----------HHHHHHHHHHHHTSSSHHHHHHHHHHHHCC-H-------HHH
T ss_pred CHHHHHHHhcCCCHHHHHHHHHHHHHcC----------CHhHHHHHHHHHcCCCHHHHHHHHHHHHHh-C-------CHH
Confidence 45666667 7889999999999999431 234556666666999999999999999874 1 247
Q ss_pred HHHHHHHHhCCc-hhHHHHHHHHHHH
Q 000609 343 ILTALCDRLLDF-DENVRKQVVAVIC 367 (1393)
Q Consensus 343 i~~~L~~rL~D~-DekVR~aaV~ai~ 367 (1393)
.+..|.+.+.|. ++.||.+++.+++
T Consensus 63 ~~~~L~~~l~~~~~~~vr~~a~~aL~ 88 (88)
T PF13646_consen 63 AIPALIKLLQDDDDEVVREAAAEALG 88 (88)
T ss_dssp THHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence 888899888775 5567999888764
No 30
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=95.44 E-value=1.4 Score=50.88 Aligned_cols=231 Identities=11% Similarity=0.186 Sum_probs=151.1
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000609 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1393)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL 142 (1393)
..|.+.|..+|+-.--||++++-=.. .-..+..|..-++.||.+-| .|.. .+...+.-....+-|-.+
T Consensus 6 ~~Ltsed~~~R~ka~~~Ls~vL~~lp-~~~L~~~ev~~L~~F~~~rl---~D~~--------~~~~~l~gl~~L~~~~~~ 73 (262)
T PF14500_consen 6 EYLTSEDPIIRAKALELLSEVLERLP-PDFLSRQEVQVLLDFFCSRL---DDHA--------CVQPALKGLLALVKMKNF 73 (262)
T ss_pred hhhCCCCHHHHHHHHHHHHHHHHhCC-HhhccHHHHHHHHHHHHHHh---ccHh--------hHHHHHHHHHHHHhCcCC
Confidence 46788999999999999999998444 44488899999999999865 3422 233333333334444444
Q ss_pred CchHHHHHHHHHHHHhhc-CCChhhHHHHHHHHHHHHhccc----ccccHHHHHHHHHhhcCCCcH----HHHHHHHHHH
Q 000609 143 ECDELVNEMYSTFFAVAS-DDHPESVLSSMQTIMIVLLEES----EDIQEDLLVILLSALGRNKND----TARRLAMNVI 213 (1393)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~-~~~~~~v~~~m~~IL~~vI~Es----e~vp~~vLd~IL~~l~~~~~~----~a~~lA~~vi 213 (1393)
+. +....+.+.+|+-+. ..++...+...-.||..+++.. ..+..+.+.-++..+.-+|-. -++++...++
T Consensus 74 ~~-~~~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~ 152 (262)
T PF14500_consen 74 SP-ESAVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVIL 152 (262)
T ss_pred Ch-hhHHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHH
Confidence 42 235555555555333 3456666666666666666553 446778888777776544432 7788888877
Q ss_pred HHhhhhhhHHHHHHHHHhhc------CCCCCCCCchhHHHHHHHHHhh---cchhhhhhhhhhcccccCCChHHHHHHHH
Q 000609 214 EQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC---SPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1393)
Q Consensus 214 ~~~~dkl~~~i~q~f~~~l~------~d~~~~~~~~~~h~Li~eL~~~---~P~lL~~ViP~Le~eL~se~~~~Rl~At~ 284 (1393)
..-. +.+.+..+|.-+.. ..+.....++..-+|-..|..| .|..-.-++|.|-+.|.++...++..+.+
T Consensus 153 ~~~~--~~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa~~~~p~LleKL~s~~~~~K~D~L~ 230 (262)
T PF14500_consen 153 QEFD--ISEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFAPFAFPLLLEKLDSTSPSVKLDSLQ 230 (262)
T ss_pred Hhcc--cchhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence 7655 46666777743321 1111111244444555555444 67777789999999999999999999999
Q ss_pred HHHHhhcCCCCC-hhhhcHHHHHHH
Q 000609 285 LVGDLFAVPGSA-NNEQFHSVFSEF 308 (1393)
Q Consensus 285 llG~mfs~~~~~-~~~~~~~~w~~f 308 (1393)
++..++..-|.. +.....++|++.
T Consensus 231 tL~~c~~~y~~~~~~~~~~~iw~~l 255 (262)
T PF14500_consen 231 TLKACIENYGADSLSPHWSTIWNAL 255 (262)
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHH
Confidence 999999876644 344457778754
No 31
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.33 E-value=1.1 Score=56.54 Aligned_cols=106 Identities=25% Similarity=0.182 Sum_probs=84.6
Q ss_pred hhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhc-HHHHHHHHhccc-----CCChhHHHHHHHHhHHHHhc
Q 000609 260 LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQF-HSVFSEFLKRLT-----DRIVAVRMSVLEHVKSCLLT 333 (1393)
Q Consensus 260 L~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~-~~~w~~fL~R~~-----D~s~~VR~~~v~~~~~iL~~ 333 (1393)
+..=.-+|+.-|.++-+.+|.-||..|.+.|+. |+.-- |.+-...|++.. |.+++||++.++..+.++.+
T Consensus 218 ~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~----fWe~iP~~i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~n 293 (1005)
T KOG1949|consen 218 IQKQFEELYSLLEDPYPMVRSTAILGVCKITSK----FWEMIPPTILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDN 293 (1005)
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHH----HHHHcCHHHHHHHHHHHHHHhhhccchheehhHhcCcHHHHcC
Confidence 333444566777888999999999999999985 55544 345667787764 67889999999999998876
Q ss_pred CCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHh
Q 000609 334 DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1393)
Q Consensus 334 ~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~l 369 (1393)
-.++..-..++++|.--|+|.-|+||.|+|..+..+
T Consensus 294 p~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~i 329 (1005)
T KOG1949|consen 294 PLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKI 329 (1005)
T ss_pred ccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHH
Confidence 555555678999999999999999999999887754
No 32
>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.76 E-value=23 Score=47.79 Aligned_cols=312 Identities=14% Similarity=0.128 Sum_probs=172.9
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhccc
Q 000609 62 PVLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1393)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~D 141 (1393)
..+.+-.-.-||--.|--+|+|-|---|+ +--++.+|++.+.. +++.+.-.-.++||.++.++..-. +
T Consensus 86 ~~~~~E~~~~vr~k~~dviAeia~~~l~e------~WPell~~L~q~~~---S~~~~~rE~al~il~s~~~~~~~~---~ 153 (1075)
T KOG2171|consen 86 EIIQSETEPSVRHKLADVIAEIARNDLPE------KWPELLQFLFQSTK---SPNPSLRESALLILSSLPETFGNT---L 153 (1075)
T ss_pred HHHHhccchHHHHHHHHHHHHHHHhcccc------chHHHHHHHHHHhc---CCCcchhHHHHHHHHhhhhhhccc---c
Confidence 34455566778989999999999987787 56677888887754 344444455688888887753221 1
Q ss_pred CCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cc-c-------HHHHHHHHHhhcCCCcHHHHHHHHH
Q 000609 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DI-Q-------EDLLVILLSALGRNKNDTARRLAMN 211 (1393)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese--~v-p-------~~vLd~IL~~l~~~~~~~a~~lA~~ 211 (1393)
-+--+-+..||...+.- ++.+ |...-..-++.++...+ .. - +.++.++= .+.+...+.+...+-+
T Consensus 154 ~~~~~~l~~lf~q~~~d--~s~~--vr~~a~rA~~a~~~~~~~~~~~~~~~~~llP~~l~vl~-~~i~~~d~~~a~~~l~ 228 (1075)
T KOG2171|consen 154 QPHLDDLLRLFSQTMTD--PSSP--VRVAAVRALGAFAEYLENNKSEVDKFRDLLPSLLNVLQ-EVIQDGDDDAAKSALE 228 (1075)
T ss_pred chhHHHHHHHHHHhccC--Ccch--HHHHHHHHHHHHHHHhccchHHHHHHHHHhHHHHHHhH-hhhhccchHHHHHHHH
Confidence 12234567777776642 2333 76666666777666654 11 1 11111111 1112222222333333
Q ss_pred HHHHhhhhhhHHHHHHHHHhhc-----CCCCCCCCch--hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHH
Q 000609 212 VIEQCAGKLEAGIKQFLVSSMS-----GDSRPGHSHI--DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVG 284 (1393)
Q Consensus 212 vi~~~~dkl~~~i~q~f~~~l~-----~d~~~~~~~~--~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~ 284 (1393)
.+..-++..-+.+..+|.+++. -.+...+... .+-++|.-+-+.+|.+.----| +-+ .+...
T Consensus 229 ~l~El~e~~pk~l~~~l~~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~-~~~----------~lv~~ 297 (1075)
T KOG2171|consen 229 ALIELLESEPKLLRPHLSQIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLAL-LGH----------TLVPV 297 (1075)
T ss_pred HHHHHHhhchHHHHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchh-hhc----------cHHHH
Confidence 3333333333444444444331 1112222222 3667788777877766543222 111 11111
Q ss_pred HHHHhhcCCCCChhhhcHHHHHHHHh-cccCCCh-hHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHHHhCCchhHHHHH
Q 000609 285 LVGDLFAVPGSANNEQFHSVFSEFLK-RLTDRIV-AVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDENVRKQ 361 (1393)
Q Consensus 285 llG~mfs~~~~~~~~~~~~~w~~fL~-R~~D~s~-~VR~~~v~~~~~iL~~~p~~-~~~~ei~~~L~~rL~D~DekVR~a 361 (1393)
++. |...-..+ .+|.+ --.|.+- +.=.-+.+.+-+-+..+..+ -..+.+.+++..-|.-++++=|.|
T Consensus 298 ~l~-~mte~~~D---------~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~p~~~~~l~~~l~S~~w~~R~A 367 (1075)
T KOG2171|consen 298 LLA-MMTEEEDD---------DEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVLPPLFEALEAMLQSTEWKERHA 367 (1075)
T ss_pred HHH-hcCCcccc---------hhhccccccccccccCcHHHHHHHHHHHHhcCChhhehHHHHHHHHHHhcCCCHHHHHH
Confidence 222 22211111 45554 1111111 11222333444445555332 345678899999999999999999
Q ss_pred HHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000609 362 VVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 362 aV~ai~~la~~~l~~v---~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~ 411 (1393)
+..+++.++.-..+.+ =.+++..+..-+.|-++.||-.|.+.+|++=-..
T Consensus 368 aL~Als~i~EGc~~~m~~~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl 420 (1075)
T KOG2171|consen 368 ALLALSVIAEGCSDVMIGNLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDL 420 (1075)
T ss_pred HHHHHHHHHcccHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhh
Confidence 9999998875333322 2346778889999999999999999999886544
No 33
>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=94.66 E-value=0.45 Score=59.61 Aligned_cols=182 Identities=19% Similarity=0.187 Sum_probs=120.7
Q ss_pred HHHHHHHHHHHHhcccc--cccHHHHHHHHHhhcCCC---cHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCC
Q 000609 167 VLSSMQTIMIVLLEESE--DIQEDLLVILLSALGRNK---NDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHS 241 (1393)
Q Consensus 167 v~~~m~~IL~~vI~Ese--~vp~~vLd~IL~~l~~~~---~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~ 241 (1393)
+......|+++.|-..+ .-.+++|..+...+..+. .+.|+.--.+||+..++.++..+.. .
T Consensus 105 lIr~tvGivITTI~s~~~~~~wpelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~--------------r 170 (885)
T KOG2023|consen 105 LIRATVGIVITTIASTGGLQHWPELLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLT--------------R 170 (885)
T ss_pred HHHhhhhheeeeeecccccccchhHHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhccc--------------C
Confidence 33333444444443333 356788888888775442 2377877788998888666554320 0
Q ss_pred chhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHH
Q 000609 242 HIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRM 321 (1393)
Q Consensus 242 ~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~ 321 (1393)
. |--.||-+=.-.++..+.+|..|+..+-..+-....++...-..--....-+.+|.+|+||.
T Consensus 171 p-----------------l~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qal~~~iD~Fle~lFalanD~~~eVRk 233 (885)
T KOG2023|consen 171 P-----------------LNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQALYVHIDKFLEILFALANDEDPEVRK 233 (885)
T ss_pred c-----------------hHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHHHHHHHHHHHHHHHHHccCCCHHHHH
Confidence 0 11122333333456799999999999998876654333322222222444567999999999
Q ss_pred HHHHHhHHHHhcCCCC--CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000609 322 SVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1393)
Q Consensus 322 ~~v~~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L 382 (1393)
.+..+...+|..+|++ .....|++++..+-.|+||.|-++||+---.+|... ++.+.+
T Consensus 234 ~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~aeqp---i~~~~L 293 (885)
T KOG2023|consen 234 NVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLALAEQP---ICKEVL 293 (885)
T ss_pred HHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHHhcCc---CcHHHH
Confidence 9999999988888763 223589999999999999999999998877666544 555555
No 34
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=94.60 E-value=2.7 Score=52.30 Aligned_cols=166 Identities=19% Similarity=0.187 Sum_probs=106.1
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCCCCh-hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHH
Q 000609 270 ELLTDQLDTRLKAVGLVGDLFAVPGSAN-NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALC 348 (1393)
Q Consensus 270 eL~se~~~~Rl~At~llG~mfs~~~~~~-~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~ 348 (1393)
-+.+.+-.+|....++++.+.-.-+ .+ -.-|-.+--..++|.-|..+.||.+.|.+....= .-+.++...+...|.
T Consensus 99 g~eskdk~VR~r~lqila~~~d~v~-eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Q--e~~~neen~~~n~l~ 175 (885)
T COG5218 99 GTESKDKKVRKRSLQILALLSDVVR-EIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQ--EMELNEENRIVNLLK 175 (885)
T ss_pred cccCcchhHHHHHHHHHHHHHHhcc-hHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHH--hccCChHHHHHHHHH
Confidence 3557899999999999987765433 11 1234455567889999999999999999876532 222344445555554
Q ss_pred HH-hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhcccc
Q 000609 349 DR-LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEW 427 (1393)
Q Consensus 349 ~r-L~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~w 427 (1393)
.- -+||.+.||.+|.--|. |+..+.-.+.||.||=....|+- +|....+++.+ -++..
T Consensus 176 ~~vqnDPS~EVRr~allni~---------vdnsT~p~IlERarDv~~anRr~-------vY~r~Lp~iGd-----~~~ls 234 (885)
T COG5218 176 DIVQNDPSDEVRRLALLNIS---------VDNSTYPCILERARDVSGANRRM-------VYERCLPRIGD-----LKSLS 234 (885)
T ss_pred HHHhcCcHHHHHHHHHHHee---------eCCCcchhHHHHhhhhhHHHHHH-------HHHHHhhhhcc-----hhhcc
Confidence 43 38999999998544332 45556667899999999888874 45544444321 23444
Q ss_pred chHHHhhh-hcccC--CC--chhHHHHhhccCcCCCC
Q 000609 428 IPGKILRC-LYDKD--FG--SDTIESVLCGSLFPTGF 459 (1393)
Q Consensus 428 IP~~IL~~-~Y~~d--~~--~~lvE~vl~e~LlP~~~ 459 (1393)
|--+|+-. +--+| +. ...+|-+....+.|.+.
T Consensus 235 i~kri~l~ewgl~dRe~sv~~a~~d~ia~~w~~~~d~ 271 (885)
T COG5218 235 IDKRILLMEWGLLDREFSVKGALVDAIASAWRIPEDL 271 (885)
T ss_pred ccceehhhhhcchhhhhhHHHHHHHHHHHHhcccccc
Confidence 44444422 11222 22 23777777777777764
No 35
>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins. MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].
Probab=94.53 E-value=12 Score=46.15 Aligned_cols=299 Identities=16% Similarity=0.203 Sum_probs=166.0
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCChhH--HHH-HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh-hhhhcccCC-
Q 000609 69 DKDVKLLVATCICEITRITAPEAPYSDDV--LKD-IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR-SCVVMLDLE- 143 (1393)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdaPytd~~--Lkd-IF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vk-s~vl~~DL~- 143 (1393)
+.+.-..+.-||..++.-..-+.++.+.. ..+ +...+++..-...+.+.. ....+|+.++.+= .++-.++.+
T Consensus 56 ~~~~~~~il~tl~~~~~~~~~~~~~~~~~~y~~~~lv~~l~~~~~~~~~~~~~---~~~~~L~~~~~l~~~iv~~l~~~~ 132 (415)
T PF12460_consen 56 SSDYCHAILSTLQSLLEKKQEDKQFEDNSWYFHRILVPRLFELALQASDQSSD---LDDRVLELLSRLINLIVRSLSPEK 132 (415)
T ss_pred ChHHHHHHHHHHHHHHHhcccccccchHHHHHHhHHHHHHHHHHHhhcccccc---cchHHHHHHHHHHHHHHHhCCHHH
Confidence 44444445555666665554444344322 222 444444433222222222 4466777777643 333445555
Q ss_pred chHHHHHHHHHHHHhh-----cC------CChhhHHHHHHHHHHHHhccccccc--HHHHHHHHHhhcCCCcH----HHH
Q 000609 144 CDELVNEMYSTFFAVA-----SD------DHPESVLSSMQTIMIVLLEESEDIQ--EDLLVILLSALGRNKND----TAR 206 (1393)
Q Consensus 144 ~~~Li~~lF~~ff~~v-----~~------~~~~~v~~~m~~IL~~vI~Ese~vp--~~vLd~IL~~l~~~~~~----~a~ 206 (1393)
.++++.++|..|+... .. ..+.........|+..+=-+. .+| .++++-++.-....... ++.
T Consensus 133 q~~~~~~~~~lf~~~~~~~~~~~~~~~~~~~~~~~~~l~~~il~~l~~~~-~~~~~~~ll~~l~~~~~~~~~~~~~~~~~ 211 (415)
T PF12460_consen 133 QQEILDELYSLFLSPKSFSPFQPSSSTISEQQSRLVILFSAILCSLRKDV-SLPDLEELLQSLLNLALSSEDEFSRLAAL 211 (415)
T ss_pred HHHHHHHHHHHHccccccCCCCccccccccccccHHHHHHHHHHcCCccc-CccCHHHHHHHHHHHHHcCCChHHHHHHH
Confidence 5788999999998110 00 123334333444443322222 233 23455444443232222 555
Q ss_pred HHHHHHHHHh--hhhhhHHHHHHHHHhhcCCCCCCCCchhHHH--------HHHHHHhhcchhhhhhhhhhcccccCCCh
Q 000609 207 RLAMNVIEQC--AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHE--------VIYDVYRCSPQILSGVVPYLTGELLTDQL 276 (1393)
Q Consensus 207 ~lA~~vi~~~--~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~--------Li~eL~~~~P~lL~~ViP~Le~eL~se~~ 276 (1393)
++..-++|++ .+.++..+..++... .............+ ++..-+..+.+++...+..| .+ .
T Consensus 212 ~~la~LvNK~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~~~~~~~~~L~~lL----~~--~ 283 (415)
T PF12460_consen 212 QLLASLVNKWPDDDDLDEFLDSLLQSI--SSSEDSELRPQALEILIWITKALVMRGHPLATELLDKLLELL----SS--P 283 (415)
T ss_pred HHHHHHHcCCCChhhHHHHHHHHHhhh--cccCCcchhHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHh----CC--h
Confidence 6666777774 344666666655554 11111111112222 22222223333344433333 22 7
Q ss_pred HHHHHHHHHHHHhhcC-CC-------CCh-----hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CCh
Q 000609 277 DTRLKAVGLVGDLFAV-PG-------SAN-----NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADA 340 (1393)
Q Consensus 277 ~~Rl~At~llG~mfs~-~~-------~~~-----~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~---~~~ 340 (1393)
++...|.+.+|-++++ ++ ++. =+-|-.+....+..+...+..+|...+.+...+|.+-|.. .+.
T Consensus 284 ~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~ll~~vP~~vl~~~l 363 (415)
T PF12460_consen 284 ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSHLLKNVPKSVLLPEL 363 (415)
T ss_pred hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHHHHhhCCHHHHHHHH
Confidence 7899999999999998 32 110 1234556667788888888889999999999999877752 445
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCH
Q 000609 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV 379 (1393)
Q Consensus 341 ~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~ 379 (1393)
+++++-|.+.|-=+|..||.++..++..+.......+.+
T Consensus 364 ~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~~i~~ 402 (415)
T PF12460_consen 364 PTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPELISE 402 (415)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHHHHHH
Confidence 688888898888788889999999998877766444443
No 36
>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.36 E-value=9.3 Score=49.45 Aligned_cols=374 Identities=13% Similarity=0.095 Sum_probs=197.0
Q ss_pred hhhhhhcccccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh
Q 000609 262 GVVPYLTGELLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA 340 (1393)
Q Consensus 262 ~ViP~Le~eL~se~~~~Rl~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~ 340 (1393)
+.+|.+-.+|.+.-...|..|++ +++.|--+. +... +|...++-..=.+.+.-.-+=.+....-..+|.. +
T Consensus 13 ~ei~elks~l~s~~~~kr~~a~kkvIa~Mt~G~--DvSs----lF~dvvk~~~T~dlelKKlvyLYl~nYa~~~P~~--a 84 (734)
T KOG1061|consen 13 GEIPELKSQLNSQSKEKRKDAVKKVIAYMTVGK--DVSS----LFPDVVKCMQTRDLELKKLVYLYLMNYAKGKPDL--A 84 (734)
T ss_pred hhchHHHHHhhhhhhhhHHHHHHHHHhcCccCc--chHh----hhHHHHhhcccCCchHHHHHHHHHHHhhccCchH--H
Confidence 34555555665555566666664 566665542 3444 5555555555555666666666666555666753 4
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCc
Q 000609 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSI 420 (1393)
Q Consensus 341 ~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~ 420 (1393)
...+..+.+-.-|+++.+|.-|+...| +-....+.+-...-+..-.+|+.+-||+.|..+++++|.....-+.
T Consensus 85 ~~avnt~~kD~~d~np~iR~lAlrtm~---~l~v~~i~ey~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~~~~~~---- 157 (734)
T KOG1061|consen 85 ILAVNTFLKDCEDPNPLIRALALRTMG---CLRVDKITEYLCDPLLKCLKDDDPYVRKTAAVCVAKLFDIDPDLVE---- 157 (734)
T ss_pred HhhhhhhhccCCCCCHHHHHHHhhcee---eEeehHHHHHHHHHHHHhccCCChhHHHHHHHHHHHhhcCChhhcc----
Confidence 456788888899999999998666655 3334444555667778888999999999999999999985432211
Q ss_pred chhccccchHHHhhhhcccCCC---c--hhHHHHhhcc--CcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Q 000609 421 NQNEFEWIPGKILRCLYDKDFG---S--DTIESVLCGS--LFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRL 493 (1393)
Q Consensus 421 ~~~~~~wIP~~IL~~~Y~~d~~---~--~lvE~vl~e~--LlP~~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~l 493 (1393)
-..+++.+=..+.+.+.. + ..+..+.... -.++..+ ..+...++.....+++.+. ..|+.
T Consensus 158 ----~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~~~~~~~l~-~~~~~~lL~al~ec~EW~q---i~IL~----- 224 (734)
T KOG1061|consen 158 ----DSGLVDALKDLLSDSNPMVVANALAALSEIHESHPSVNLLELN-PQLINKLLEALNECTEWGQ---IFILD----- 224 (734)
T ss_pred ----ccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCCCCCccccc-HHHHHHHHHHHHHhhhhhH---HHHHH-----
Confidence 122233333333322222 0 0111111111 1111111 2345555554444444321 11111
Q ss_pred HHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCC--chhHHHHHHHHHhhccHHHHH-HHH-------HHhc--C
Q 000609 494 QQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWK-ILM-------NLLD--S 561 (1393)
Q Consensus 494 ~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpD--p~Ka~~~L~kf~klnD~ri~k-lLk-------~~id--~ 561 (1393)
++..+.-.++.+.+.-+..+..+|.- .+. -.-+...+..+.+.... ++. +++ ++++ +
T Consensus 225 ---------~l~~y~p~d~~ea~~i~~r~~p~Lqh-~n~avvlsavKv~l~~~~~~~~-~~~~~~~K~~~pl~tlls~~~ 293 (734)
T KOG1061|consen 225 ---------CLAEYVPKDSREAEDICERLTPRLQH-ANSAVVLSAVKVILQLVKYLKQ-VNELLFKKVAPPLVTLLSSES 293 (734)
T ss_pred ---------HHHhcCCCCchhHHHHHHHhhhhhcc-CCcceEeehHHHHHHHHHHHHH-HHHHHHHHhcccceeeecccc
Confidence 11111111211222111111111100 000 00112222222222111 111 111 1122 2
Q ss_pred CCCHHHHHHHHHHHHHHhc---CC-CC----hH--HHHHHHHHhhhccccchhHHHHHHHHHHhhcccchhhhHHHHHHH
Q 000609 562 NTSFDQAFTGRDDLLKILG---AK-HR----LY--DFLSTLSMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDI 631 (1393)
Q Consensus 562 ~t~~~t~~~a~~ELlkrL~---~~-~~----~~--e~l~~Ll~R~S~li~Nks~V~~LL~~~~~~~~~~~~~~~~~a~eL 631 (1393)
+..|-.++|+.--+.++-+ .+ .. .. -+++..-..+-..+.|.+++..++..+..........+...+.+-
T Consensus 294 e~qyvaLrNi~lil~~~p~~~~~~~~~Ff~kynDPiYvK~eKleil~~la~~~nl~qvl~El~eYatevD~~fvrkaIra 373 (734)
T KOG1061|consen 294 EIQYVALRNINLILQKRPEILKVEIKVFFCKYNDPIYVKLEKLEILIELANDANLAQVLAELKEYATEVDVDFVRKAVRA 373 (734)
T ss_pred hhhHHHHhhHHHHHHhChHHHHhHhHeeeeecCCchhhHHHHHHHHHHHhhHhHHHHHHHHHHHhhhhhCHHHHHHHHHH
Confidence 3455555555444433321 11 00 00 135555566777788999999999988766555455566777788
Q ss_pred HHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcc
Q 000609 632 LGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGT 675 (1393)
Q Consensus 632 L~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~ 675 (1393)
+-.++...+.. .+++..|.++++-.-+.++.+++.++..+...
T Consensus 374 ig~~aik~e~~-~~cv~~lLell~~~~~yvvqE~~vvi~dilRk 416 (734)
T KOG1061|consen 374 IGRLAIKAEQS-NDCVSILLELLETKVDYVVQEAIVVIRDILRK 416 (734)
T ss_pred hhhhhhhhhhh-hhhHHHHHHHHhhcccceeeehhHHHHhhhhc
Confidence 88888888888 78899999999976556677778887766543
No 37
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.25 E-value=0.61 Score=61.97 Aligned_cols=128 Identities=16% Similarity=0.150 Sum_probs=90.8
Q ss_pred HHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHH
Q 000609 304 VFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETV 382 (1393)
Q Consensus 304 ~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L 382 (1393)
+|. .|+-|+.|+.|.||+.|++..+-.+.+-|+.-...--++++.=.|.|-...||+.+|+++.-+-...-..-..+++
T Consensus 287 if~sVFVHRYRDV~~~IRaiCiqeLgiWi~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lF 366 (1048)
T KOG2011|consen 287 IFDSVFVHRYRDVDPDIRAICIQELGIWIKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELF 366 (1048)
T ss_pred HhhheeeeecccCchHHHHHHHHHHHHHHHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHH
Confidence 444 6899999999999999999999988888864333467899999999999999999999999877653222222221
Q ss_pred -HHHHHh-----hccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCC
Q 000609 383 -KLVAER-----LRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG 442 (1393)
Q Consensus 383 -~~l~eR-----~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~ 442 (1393)
.-..+| .||-..+||..++..+-..+...... .+. -..|.+++|+.+.+
T Consensus 367 tsRFK~RIVeMadrd~~~~Vrav~L~~~~~~~~~g~L~-------d~d----i~~Vy~Li~d~~r~ 421 (1048)
T KOG2011|consen 367 TSRFKDRIVEMADRDRNVSVRAVGLVLCLLLSSSGLLS-------DKD----ILIVYSLIYDSNRR 421 (1048)
T ss_pred HHHHHHHHHHHHhhhcchhHHHHHHHHHHHHhcccccC-------hhH----HHHHHHHHhccCcc
Confidence 112222 58889999999998887776643211 111 23457777876655
No 38
>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]
Probab=94.17 E-value=9.6 Score=48.91 Aligned_cols=298 Identities=16% Similarity=0.229 Sum_probs=154.3
Q ss_pred hhhcCCCcchHHHHHHHHHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccC
Q 000609 63 VLLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDL 142 (1393)
Q Consensus 63 ~LL~HkD~~Vr~~vAcCLadIlRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL 142 (1393)
..|.....-||..+|.||+-+.-. -.||.-+++..||+.+-.-.+.=. + +.....|..+.. .+...|
T Consensus 560 ~gl~De~qkVR~itAlalsalaea---a~Pygie~fDsVlkpLwkgir~hr---g---k~laafLkAigy---liplmd- 626 (1172)
T KOG0213|consen 560 HGLKDEQQKVRTITALALSALAEA---ATPYGIEQFDSVLKPLWKGIRQHR---G---KELAAFLKAIGY---LIPLMD- 626 (1172)
T ss_pred HhhcccchhhhhHHHHHHHHHHHh---cCCcchHHHHHHHHHHHHHHHHcc---C---hHHHHHHHHHhh---cccccc-
Confidence 344555566999999999988763 358999999999998865443211 1 111222222221 111111
Q ss_pred CchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC----cHHHHHHHHHHHHHhhh
Q 000609 143 ECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK----NDTARRLAMNVIEQCAG 218 (1393)
Q Consensus 143 ~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~----~~~a~~lA~~vi~~~~d 218 (1393)
.-+..+|. ..+|.-+|-|..+-..+.-+++|.-+.+.- .+++|.- .|
T Consensus 627 -------~eya~yyT--------------revmlil~rEf~sPDeemkkivLKVv~qcc~t~Gv~~~y~r--------~d 677 (1172)
T KOG0213|consen 627 -------AEYASYYT--------------REVMLILIREFGSPDEEMKKIVLKVVKQCCATDGVEPAYIR--------FD 677 (1172)
T ss_pred -------HHHHHHhH--------------HHHHHHHHHhhCCChHHHHHHHHHHHHHHhcccCCCHHHHh--------hh
Confidence 11222222 345555666665544444445554443211 1133321 12
Q ss_pred hhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCC
Q 000609 219 KLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA 296 (1393)
Q Consensus 219 kl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~ 296 (1393)
.+...+..|.+-=+.+|... -...-+.-.+|..- +-.++.- +-.+|..|.++.|..+.+++.++|+..|..
T Consensus 678 ilp~ff~~fw~rrmA~drr~---ykqlv~ttv~ia~KvG~~~~v~R----~v~~lkde~e~yrkm~~etv~ri~~~lg~~ 750 (1172)
T KOG0213|consen 678 ILPEFFFSFWGRRMALDRRN---YKQLVDTTVEIAAKVGSDPIVSR----VVLDLKDEPEQYRKMVAETVSRIVGRLGAA 750 (1172)
T ss_pred hhHHHHhhhhhhhhhccccc---hhhHHHHHHHHHHHhCchHHHHH----HhhhhccccHHHHHHHHHHHHHHHhccccc
Confidence 22222222222222222110 00112222222211 2223333 345678899999999999999999876532
Q ss_pred -----------------h------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHh--
Q 000609 297 -----------------N------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-- 332 (1393)
Q Consensus 297 -----------------~------------------------~~~~-~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~-- 332 (1393)
| ++.| |.+-..-|.|.+.+++.||....+.+..+..
T Consensus 751 diderleE~lidgil~Afqeqtt~d~vml~gfg~V~~~lg~r~kpylpqi~stiL~rLnnksa~vRqqaadlis~la~Vl 830 (1172)
T KOG0213|consen 751 DIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTVVNALGGRVKPYLPQICSTILWRLNNKSAKVRQQAADLISSLAKVL 830 (1172)
T ss_pred cccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHHHHHHhhccccchHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHH
Confidence 1 1222 6667777889999999999988777665431
Q ss_pred cCCC----------------CC---------------------------ChHHHHHHHHHHhCCchhHHHHHHHHHHHHh
Q 000609 333 TDPS----------------RA---------------------------DAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1393)
Q Consensus 333 ~~p~----------------~~---------------------------~~~ei~~~L~~rL~D~DekVR~aaV~ai~~l 369 (1393)
.... +. -+++|+..|.--|..-++||-...|.-++.+
T Consensus 831 ktc~ee~~m~~lGvvLyEylgeeypEvLgsILgAikaI~nvigm~km~pPi~dllPrltPILknrheKVqen~IdLvg~I 910 (1172)
T KOG0213|consen 831 KTCGEEKLMGHLGVVLYEYLGEEYPEVLGSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTI 910 (1172)
T ss_pred HhccHHHHHHHhhHHHHHhcCcccHHHHHHHHHHHHHHHHhccccccCCChhhhcccchHhhhhhHHHHHHHHHHHHHHH
Confidence 1100 00 1122333333334555666666666666666
Q ss_pred hhhhcCCCCHHH-HH---HHHHhhccCChhHHHHHHHHHHHHHH
Q 000609 370 ACHALNSIPVET-VK---LVAERLRDKSVLVKRYTMERLADIFR 409 (1393)
Q Consensus 370 a~~~l~~v~~e~-L~---~l~eR~rDKK~~VR~eAm~~La~lY~ 409 (1393)
+-..++.||..- ++ .|.|-++--|.++|+.|.+++|-+=+
T Consensus 911 adrgpE~v~aREWMRIcfeLlelLkahkK~iRRaa~nTfG~Iak 954 (1172)
T KOG0213|consen 911 ADRGPEYVSAREWMRICFELLELLKAHKKEIRRAAVNTFGYIAK 954 (1172)
T ss_pred HhcCcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHH
Confidence 666666666532 11 33344455555666666666665544
No 39
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=94.11 E-value=0.073 Score=52.17 Aligned_cols=106 Identities=12% Similarity=0.070 Sum_probs=55.9
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh-hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCC--
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRAD-- 339 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~-~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~-- 339 (1393)
++|.|-.-|...+..+|..|..+|+.|.......... .....+..+++=.+|.++.||..++....++....+....
T Consensus 8 ~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~ 87 (120)
T cd00020 8 GLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIV 87 (120)
T ss_pred ChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHH
Confidence 6677777778888999999999999988762100000 0113444444444455555555555555554433221000
Q ss_pred -hHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 000609 340 -APQILTALCDRLLDFDENVRKQVVAVICD 368 (1393)
Q Consensus 340 -~~ei~~~L~~rL~D~DekVR~aaV~ai~~ 368 (1393)
...+++.|...+.+.|..||..++.+++.
T Consensus 88 ~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~ 117 (120)
T cd00020 88 LEAGGVPKLVNLLDSSNEDIQKNATGALSN 117 (120)
T ss_pred HHCCChHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 01234444445555555555555544443
No 40
>PLN03200 cellulose synthase-interactive protein; Provisional
Probab=94.06 E-value=31 Score=50.17 Aligned_cols=111 Identities=23% Similarity=0.218 Sum_probs=68.6
Q ss_pred chhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCC--cCc------cccHHHHHHHHhhccccch--hhHHHHHHH
Q 000609 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSP--LLL------GGTEEELVNLLKEENEIIK--EGILHVLAK 671 (1393)
Q Consensus 602 Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P--~lF------k~~~~~L~~lL~~~~~~~~--~~~LkiLa~ 671 (1393)
+-..|+.|++.+... +......|-..|..+.+.+| ++| .+.+..|+++|...|.... ..+|.+|+.
T Consensus 733 ~~~~I~~Lv~lLr~G----~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~~~~~~~~~~~~al~~l~~ 808 (2102)
T PLN03200 733 AEDIILPLTRVLREG----TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLNSTDLDSSATSEALEALAL 808 (2102)
T ss_pred hcCcHHHHHHHHHhC----ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHhcCCcchhhHHHHHHHHHH
Confidence 344577788766432 22234455667888888888 223 4567999999998654333 347787775
Q ss_pred hhcc---------hHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCC
Q 000609 672 AGGT---------IREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDD 717 (1393)
Q Consensus 672 ~~k~---------~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~ 717 (1393)
..+. .+.-+.+..+++.+..+-+ -.|.|.-.--|+.+|..++++.
T Consensus 809 l~~~~~~~~~~~~~~~~~~e~p~~l~~l~~~l-~~~~p~~~~kai~il~~~~~~~ 862 (2102)
T PLN03200 809 LARTKGGANFSHPPWAVLAEVPSSLEPLVRCL-AEGHPLVQDKAIEILSRLCRDQ 862 (2102)
T ss_pred HHhhcccCCCCCCchhhHHhccCchHHHHHHH-HcCChHHHHHHHHHHHHHhccC
Confidence 4331 1111222234455544445 6788988888999999888764
No 41
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=94.06 E-value=8.3 Score=50.50 Aligned_cols=129 Identities=13% Similarity=0.162 Sum_probs=98.3
Q ss_pred ccCCChHHHHHHHH-HHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHH
Q 000609 271 LLTDQLDTRLKAVG-LVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCD 349 (1393)
Q Consensus 271 L~se~~~~Rl~At~-llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~ 349 (1393)
|.+-+...|+.|.+ ++..|..+. ++..=+|++-+.|.. .+++++..+=-+...+-..+| +++-..++.+.+
T Consensus 28 l~s~n~~~kidAmK~iIa~M~~G~--dmssLf~dViK~~~t----rd~ElKrL~ylYl~~yak~~P--~~~lLavNti~k 99 (757)
T COG5096 28 LESSNDYKKIDAMKKIIAQMSLGE--DMSSLFPDVIKNVAT----RDVELKRLLYLYLERYAKLKP--ELALLAVNTIQK 99 (757)
T ss_pred ccccChHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHh----cCHHHHHHHHHHHHHHhccCH--HHHHHHHHHHHh
Confidence 67777888888875 567777654 577777888888873 356787777666666666777 344456789999
Q ss_pred HhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 350 RLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 350 rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
=|.|+++.+|..|+.+.+.+-.. .+-+-++..+.+-+-|+.+-||+.|+-+++++|+.
T Consensus 100 Dl~d~N~~iR~~AlR~ls~l~~~---el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~l 157 (757)
T COG5096 100 DLQDPNEEIRGFALRTLSLLRVK---ELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRL 157 (757)
T ss_pred hccCCCHHHHHHHHHHHHhcChH---HHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhc
Confidence 99999999999988877744332 33345677889999999999999999999999973
No 42
>KOG1949 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.03 E-value=2 Score=54.31 Aligned_cols=188 Identities=19% Similarity=0.158 Sum_probs=126.5
Q ss_pred hhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh-----hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc----CC
Q 000609 265 PYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT----DP 335 (1393)
Q Consensus 265 P~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~-----~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~----~p 335 (1393)
|-|.--|++.|-.+|..|..++-+.|--.+.+... --..-|....+=..|--|.||-..++..-.+... -|
T Consensus 177 p~l~R~L~a~Ns~VrsnAa~lf~~~fP~~dpd~~~e~mD~i~~kQf~~l~~LL~d~~p~VRS~a~~gv~k~~s~fWe~iP 256 (1005)
T KOG1949|consen 177 PILWRGLKARNSEVRSNAALLFVEAFPIRDPDLHAEEMDSIIQKQFEELYSLLEDPYPMVRSTAILGVCKITSKFWEMIP 256 (1005)
T ss_pred HHHHHhhccCchhhhhhHHHHHHHhccCCCCCccHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHcC
Confidence 67788899999999999999999999876655421 2233355556667899999999999988775532 24
Q ss_pred CCCChHHHHHHHHH-HhCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000609 336 SRADAPQILTALCD-RLLDFDENVRKQVVAVICDVACHALNSIPVE-TVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1393)
Q Consensus 336 ~~~~~~ei~~~L~~-rL~D~DekVR~aaV~ai~~la~~~l~~v~~e-~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~ 413 (1393)
.. ...++++.+.+ --.|+--.||.+|++.+-.++.....+-=.+ .|..|..-+-|+.-+||..+...|.++=.+-.-
T Consensus 257 ~~-i~~~ll~kI~d~~a~dt~s~VR~svf~gl~~~l~np~sh~~le~~Lpal~~~l~D~se~VRvA~vd~ll~ik~vra~ 335 (1005)
T KOG1949|consen 257 PT-ILIDLLKKITDELAFDTSSDVRCSVFKGLPMILDNPLSHPLLEQLLPALRYSLHDNSEKVRVAFVDMLLKIKAVRAA 335 (1005)
T ss_pred HH-HHHHHHHHHHHHhhhccchheehhHhcCcHHHHcCccchhHHHHHHHhcchhhhccchhHHHHHHHHHHHHHhhhhh
Confidence 42 23455544443 4589999999999999988776554443223 457888889999999999999999998775321
Q ss_pred hccCCCcchhccccchHHHhhhhcccCCC--chhHHHHhhccCcCCCCCHH
Q 000609 414 RNFNGSINQNEFEWIPGKILRCLYDKDFG--SDTIESVLCGSLFPTGFSVK 462 (1393)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~--~~lvE~vl~e~LlP~~~~~~ 462 (1393)
+-+.-||--.+-.--+.|-+ ..-+-+.++...||..-+.+
T Consensus 336 ---------~f~~I~~~d~~l~~L~~d~~~v~rr~~~li~~s~lP~~k~ee 377 (1005)
T KOG1949|consen 336 ---------KFWKICPMDHILVRLETDSRPVSRRLVSLIFNSFLPVNKPEE 377 (1005)
T ss_pred ---------hhhccccHHHHHHHHhccccHHHHHHHHHHHHhhcCCCCcHH
Confidence 22333443333222233432 12344455667778765444
No 43
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=94.01 E-value=0.58 Score=54.93 Aligned_cols=97 Identities=19% Similarity=0.246 Sum_probs=77.0
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-----------CC
Q 000609 271 LLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-----------AD 339 (1393)
Q Consensus 271 L~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-----------~~ 339 (1393)
+++.+..+|..|++.+| +++--+-.++.+|=.+|..-+.+ | +..||+..++.+-+++..|... ..
T Consensus 36 v~~~~~~vR~~al~cLG-l~~Lld~~~a~~~l~l~~~~~~~--~-~~~v~~~al~~l~Dll~~~g~~~~~~~~~~~~~~~ 111 (298)
T PF12719_consen 36 VQSSDPAVRELALKCLG-LCCLLDKELAKEHLPLFLQALQK--D-DEEVKITALKALFDLLLTHGIDIFDSESDNDESVD 111 (298)
T ss_pred hcCCCHHHHHHHHHHHH-HHHHhChHHHHHHHHHHHHHHHh--C-CHHHHHHHHHHHHHHHHHcCchhccchhccCccch
Confidence 55689999999999999 55555557888776666666633 5 9999999999999999988421 12
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh
Q 000609 340 APQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1393)
Q Consensus 340 ~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1393)
...+.+.+.+-|.+.++.||..||+.+|.+-.
T Consensus 112 ~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL 143 (298)
T PF12719_consen 112 SKSLLKILTKFLDSENPELQAIAVEGLCKLLL 143 (298)
T ss_pred HhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHh
Confidence 34688888888988899999999999997654
No 44
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=93.97 E-value=23 Score=46.92 Aligned_cols=137 Identities=18% Similarity=0.101 Sum_probs=75.8
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh--hHHHHHHHHhHHHHhcCCCCCChHHH--------
Q 000609 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV--AVRMSVLEHVKSCLLTDPSRADAPQI-------- 343 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~--~VR~~~v~~~~~iL~~~p~~~~~~ei-------- 343 (1393)
|-.+-|-.|++.+-.+.-+=... -+|+=+=--|.+|..-++. .+|...+...-+...-+|-++.+.+.
T Consensus 337 ~~ae~R~~av~fI~~iv~al~~~--~~~~fV~vl~~~~cagv~~~s~~ls~~~isl~~~~~~~P~g~~a~~n~~~d~~~~ 414 (1529)
T KOG0413|consen 337 DLAEFRTNAVTFIHKIVEALPYT--YTYDFVQVLFKGRCAGVKSLSTELSSILISLFDFTAPDPPGLDAEQNEEEDEEEE 414 (1529)
T ss_pred hhhcchhhHHHHHHHHHHhcccc--cccHHHHHHHHHHccccchhHHHHHHHHHHHHHHcCCCCCcchHHHhhhhhhhhc
Confidence 45677999999998888642211 1122111224444433321 24444444444444555654433322
Q ss_pred --HHHHHHHhCCchhHHHHHHHHHHHHh-hhhhcCCCCHH------------------HHHHHHHhhccCChhHHHHHHH
Q 000609 344 --LTALCDRLLDFDENVRKQVVAVICDV-ACHALNSIPVE------------------TVKLVAERLRDKSVLVKRYTME 402 (1393)
Q Consensus 344 --~~~L~~rL~D~DekVR~aaV~ai~~l-a~~~l~~v~~e------------------~L~~l~eR~rDKK~~VR~eAm~ 402 (1393)
++.+..|.-|.|.-||....--..+. ...+-+.++.. +-..+..||-||++.||..|+.
T Consensus 415 g~~~~~~~r~~~~dv~v~~~els~~~~e~e~dn~~~~s~s~e~qk~~k~~~~v~evg~~~~~~~~rClDkaaavR~~al~ 494 (1529)
T KOG0413|consen 415 GEDEEEEERNEQDDVAVKEEELSDSDEENEGDNEENVSKSKEEQKKEKKAKEVKEVGVLYNIVYMRCLDKAAAVRLHALN 494 (1529)
T ss_pred cchHhhhhhhcchHHHHHHHhcCchHhhhcccchhhhhhHHHHHHHhhhhhhhhhhhHHHHHHHHHHhhhhHHHHHHHHH
Confidence 24677788888888887633211000 00011111111 1235899999999999999999
Q ss_pred HHHHHHHHhh
Q 000609 403 RLADIFRGCC 412 (1393)
Q Consensus 403 ~La~lY~~~~ 412 (1393)
.++++-....
T Consensus 495 s~tk~l~l~~ 504 (1529)
T KOG0413|consen 495 SLTKILQLQS 504 (1529)
T ss_pred HHHHHHHHhc
Confidence 9999988543
No 45
>KOG1248 consensus Uncharacterized conserved protein [Function unknown]
Probab=93.63 E-value=39 Score=46.00 Aligned_cols=145 Identities=16% Similarity=0.187 Sum_probs=93.2
Q ss_pred hhHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcC
Q 000609 121 GRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGR 199 (1393)
Q Consensus 121 ~~~~~lLe~La~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~ 199 (1393)
..-.+.+.-+.+-..++-..|.+ |=.=+..+|..||.+- .+..+.+.....+++..|+.++-.+-+.+-...+..+..
T Consensus 282 ~~t~~W~~v~~~~~~~la~~q~~~~~~~~~~~~~~~~t~~-~s~~~e~~q~a~q~l~~il~~sv~~~~~~c~~~~~~~l~ 360 (1176)
T KOG1248|consen 282 LLTVAWLKVLNEAHDILATLQEEKALQALPRLFSLFFTIL-ESLIEELVQAASQSLKEILKESVTVIDALCSKQLHSLLD 360 (1176)
T ss_pred HHHHHHHHHHHHHHHHHHHhCHHHHHHhhhhhhhHHHHHH-hcccHHHHHHHHHHHHHHhcccCcccHHHHHHHHHHHHc
Confidence 45567777777777777667766 5445677888888844 444567888889999999999888766666665655545
Q ss_pred CCcHHHH----HHHHHHHHHhhhhhhHHHHHHHHHhhc-CCCCCCCCchhHH-HHHHHHHhhcchhhhhhhhh
Q 000609 200 NKNDTAR----RLAMNVIEQCAGKLEAGIKQFLVSSMS-GDSRPGHSHIDYH-EVIYDVYRCSPQILSGVVPY 266 (1393)
Q Consensus 200 ~~~~~a~----~lA~~vi~~~~dkl~~~i~q~f~~~l~-~d~~~~~~~~~~h-~Li~eL~~~~P~lL~~ViP~ 266 (1393)
-+..++| ++-..+|++|...-.|++..-+..+-. ..+.........+ -+.-.+-..=|+.+++++|.
T Consensus 361 ~kf~~~~~~ilqi~s~~fek~G~~s~~~l~~~L~~l~~lr~~~d~~~~~~ld~~IGSAV~AmGPe~vL~~lpL 433 (1176)
T KOG1248|consen 361 YKFHAVWRFILQILSALFEKCGELSGPELTKTLEGLCDLRASPDFFHKLQLDQCIGSAVRAMGPERVLTILPL 433 (1176)
T ss_pred chHHHHHHHHHHHHHHHHHHhhhhcCHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHhhCHHHHHHHcch
Confidence 4444555 455555666766555555544443321 1111222222443 45566777899999999997
No 46
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=93.63 E-value=0.18 Score=49.55 Aligned_cols=66 Identities=20% Similarity=0.169 Sum_probs=49.7
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 341 ~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v---~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
.+|++.+..++.|+|.+||..||+++..++...-..+ =.+++..|..++.|-...||..| +.|-++
T Consensus 26 ~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~~Vr~~a-~~Ld~l 94 (97)
T PF12755_consen 26 DEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDENVRSAA-ELLDRL 94 (97)
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCchhHHHHH-HHHHHH
Confidence 4788888888999999999999998888876443332 23567788888888888888877 555444
No 47
>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1
Probab=93.52 E-value=0.66 Score=50.34 Aligned_cols=84 Identities=19% Similarity=0.141 Sum_probs=68.5
Q ss_pred HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 000609 247 EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1393)
Q Consensus 247 ~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~ 326 (1393)
..+-.|..-.|.++-+.+|.+..-|..+++.+|..|...|.+++.. ++.+-.+.++..++.-..|.++.||.....+
T Consensus 10 ~~l~DL~~r~~~~ve~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~---d~ik~k~~l~~~~l~~l~D~~~~Ir~~A~~~ 86 (178)
T PF12717_consen 10 IALGDLCIRYPNLVEPYLPNLYKCLRDEDPLVRKTALLVLSHLILE---DMIKVKGQLFSRILKLLVDENPEIRSLARSF 86 (178)
T ss_pred HHHHHHHHhCcHHHHhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHc---CceeehhhhhHHHHHHHcCCCHHHHHHHHHH
Confidence 3455666677888888888888888888889999998888888875 5677777788888888889888888888888
Q ss_pred hHHHHhc
Q 000609 327 VKSCLLT 333 (1393)
Q Consensus 327 ~~~iL~~ 333 (1393)
...++..
T Consensus 87 ~~e~~~~ 93 (178)
T PF12717_consen 87 FSELLKK 93 (178)
T ss_pred HHHHHHh
Confidence 8877765
No 48
>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]
Probab=93.17 E-value=9.4 Score=50.01 Aligned_cols=103 Identities=17% Similarity=0.129 Sum_probs=86.8
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHH-HH
Q 000609 304 VFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE-TV 382 (1393)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e-~L 382 (1393)
.-+.|++=+.|.++.||...+.....+ ...+....+++.+.+++.|++.-||..|+-+|..+-.-+.+.++.. ..
T Consensus 93 avNti~kDl~d~N~~iR~~AlR~ls~l----~~~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld~~l~~~~g~~ 168 (757)
T COG5096 93 AVNTIQKDLQDPNEEIRGFALRTLSLL----RVKELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLDKDLYHELGLI 168 (757)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHhc----ChHHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcCHhhhhcccHH
Confidence 457888899999999999999887642 2223456788999999999999999999999998776677777777 77
Q ss_pred HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 383 KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 383 ~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
..+.+.+.|-.+.|=..|+.+|..++..
T Consensus 169 ~~l~~l~~D~dP~Vi~nAl~sl~~i~~e 196 (757)
T COG5096 169 DILKELVADSDPIVIANALASLAEIDPE 196 (757)
T ss_pred HHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence 7788999999999999999999999987
No 49
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=93.02 E-value=11 Score=47.07 Aligned_cols=296 Identities=15% Similarity=0.192 Sum_probs=167.1
Q ss_pred HHHHHhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HHHHHhhhhhh------hcccCCchHHHHHHH
Q 000609 80 ICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LETLAKYRSCV------VMLDLECDELVNEMY 152 (1393)
Q Consensus 80 LadIlRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~l-Le~La~vks~v------l~~DL~~~~Li~~lF 152 (1393)
|+.|+|+.+----|...+.+.+|--+..-|.+ .++|..|++|+ ++-|+.+--=| +|-|+.
T Consensus 45 ls~l~yll~tge~f~e~~at~lff~i~KlFQh----kd~~Lrq~VY~aIkelS~~tedvlm~tssiMkD~~--------- 111 (898)
T COG5240 45 LSNLFYLLSTGELFPEATATNLFFAILKLFQH----KDLYLRQCVYSAIKELSKLTEDVLMGTSSIMKDLN--------- 111 (898)
T ss_pred HHHHHHHHhccccchhhHHHHHHHHHHHHHhc----CChHHHHHHHHHHHHHhhcchhhhHHHHHHHHhhc---------
Confidence 67889998888888888889888888777753 67899999886 45555432222 234442
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHh-hcC---CCcH----HHHHH---HHHHHHHhhhhhh
Q 000609 153 STFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSA-LGR---NKND----TARRL---AMNVIEQCAGKLE 221 (1393)
Q Consensus 153 ~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~-l~~---~~~~----~a~~l---A~~vi~~~~dkl~ 221 (1393)
++-+..+......-|..||++...-. ..-+|.+ +.. .... .||.| +.+.+.+-...-|
T Consensus 112 --------~g~~~~~kp~AiRsL~~Vid~~tv~~---~er~l~~a~Vs~~~a~~saalv~aYhLlp~~~~~~~rw~ne~q 180 (898)
T COG5240 112 --------GGVPDDVKPMAIRSLFSVIDGETVYD---FERYLNQAFVSTSMARRSAALVVAYHLLPNNFNQTKRWLNETQ 180 (898)
T ss_pred --------cCCccccccHHHHHHHHhcCcchhhh---HHHHhhhhccccchhhhhhHHHHhhhhccccHHHHHHHHHHHH
Confidence 22233333333344444444421111 0111111 110 0111 22222 1111111111112
Q ss_pred HHHH---HHHHHhhcCC-CC-CCCCch-hHH--HHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000609 222 AGIK---QFLVSSMSGD-SR-PGHSHI-DYH--EVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1393)
Q Consensus 222 ~~i~---q~f~~~l~~d-~~-~~~~~~-~~h--~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~ 293 (1393)
.+|. ||=+ ..|. +. |....+ ++| .++|++-+..--.++..+..+-..+...|-.--..-++.+..++-.
T Consensus 181 eav~~l~q~p~--~~~n~gy~Pn~~~isqYHalGlLyq~kr~dkma~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~- 257 (898)
T COG5240 181 EAVLDLKQFPN--QHGNEGYEPNGNPISQYHALGLLYQSKRTDKMAQLKLVEHFRGNASMKNQLAGVLLVRATVELLKE- 257 (898)
T ss_pred HHHhhHhhCcC--ccCCcccCCCCChHHHHHHHHHHHHHhcccHHHHHHHHHHhhcccccccchhheehHHHHHHHHHh-
Confidence 2221 1100 0111 11 112222 455 6799999987777777776666666555544445556666666655
Q ss_pred CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh
Q 000609 294 GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1393)
Q Consensus 294 ~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1393)
.+++..+..+..+.||+-.-| -|-++..+..-.+-..|-......+.+..|+--|.-+.---|.+|...+.++|...
T Consensus 258 n~q~~~q~rpfL~~wls~k~e---mV~lE~Ar~v~~~~~~nv~~~~~~~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~ 334 (898)
T COG5240 258 NSQALLQLRPFLNSWLSDKFE---MVFLEAARAVCALSEENVGSQFVDQTVSSLRTFLKSTRVVLRFSAMRILNQLAMKY 334 (898)
T ss_pred ChHHHHHHHHHHHHHhcCcch---hhhHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhhC
Confidence 457888888899999864333 45444444433322233222344577889999999999999999999999999988
Q ss_pred cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000609 374 LNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 374 l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~ 406 (1393)
++.|..-- ..+-..+-|-+..+-.+||+.|-+
T Consensus 335 P~kv~vcN-~evEsLIsd~Nr~IstyAITtLLK 366 (898)
T COG5240 335 PQKVSVCN-KEVESLISDENRTISTYAITTLLK 366 (898)
T ss_pred CceeeecC-hhHHHHhhcccccchHHHHHHHHH
Confidence 88765421 123455677787888888887754
No 50
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.82 E-value=30 Score=44.35 Aligned_cols=135 Identities=18% Similarity=0.247 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhcccch-HHHHHHHHhhcCChHHHHHH
Q 000609 628 CMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSS-VDLLLERLCLEGSRRQAKYA 706 (1393)
Q Consensus 628 a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~-l~~~L~~lal~Gtp~qAK~A 706 (1393)
|-.=|-.++...|..-....+-|++++.|+.+.+...++.+|.+++..+ .+++. +..+| -|++.+-..+..|
T Consensus 393 AV~Sl~~La~ssP~FA~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-----~i~eeql~~il--~~L~D~s~dvRe~ 465 (823)
T KOG2259|consen 393 AVASLCSLATSSPGFAVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-----AIREEQLRQIL--ESLEDRSVDVREA 465 (823)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-----eecHHHHHHHH--HHHHhcCHHHHHH
Confidence 4455677888889888888888999998876666667777777776532 11221 22223 3456666778888
Q ss_pred HHHHHhhcCCCccchHHHHHHHHHHhhhh-cCCCchHHHHHHHHHhhcccccccchHHHHHHHHHhh
Q 000609 707 VHALAAITKDDGLKSLSVLYKRLVDMLEE-KTHLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKI 772 (1393)
Q Consensus 707 v~~Laa~~~~~~~~~~~~L~~~L~~~L~~-~~~l~t~L~sL~~Ia~~ap~vfe~~~~eI~~fiik~I 772 (1393)
.+-|....+-....++.-.++.+.+.|.. -..=+..+..++.|+|.+|..+.. -...|+-+..
T Consensus 466 l~elL~~~~~~d~~~i~m~v~~lL~~L~kyPqDrd~i~~cm~~iGqnH~~lv~s---~m~rfl~kh~ 529 (823)
T KOG2259|consen 466 LRELLKNARVSDLECIDMCVAHLLKNLGKYPQDRDEILRCMGRIGQNHRRLVLS---NMGRFLEKHT 529 (823)
T ss_pred HHHHHHhcCCCcHHHHHHHHHHHHHHhhhCCCCcHHHHHHHHHHhccChhhHHH---HHHHHHHhcc
Confidence 99888777665555555556666666652 225578899999999999988765 3445554333
No 51
>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.75 E-value=2.3 Score=56.82 Aligned_cols=153 Identities=14% Similarity=0.172 Sum_probs=108.9
Q ss_pred hhHHHHHHHHHh---hcc--hhhhhhhhhhcccc----cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc
Q 000609 243 IDYHEVIYDVYR---CSP--QILSGVVPYLTGEL----LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT 313 (1393)
Q Consensus 243 ~~~h~Li~eL~~---~~P--~lL~~ViP~Le~eL----~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~ 313 (1393)
.+.|++|..+.+ ..| .+|....|.++.-- ...|++++..||-.+|+|.-- ++.|-..|-+++-.-+.+
T Consensus 895 Dd~~d~i~~icE~eLl~gek~lLg~f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~i-Sa~fces~l~llftimek-- 971 (1251)
T KOG0414|consen 895 DDLADLISGICEKELLYGEKSLLGRFAPIVVEGCRNPGLFSDPELQAAATLALGKLMCI-SAEFCESHLPLLFTIMEK-- 971 (1251)
T ss_pred hhHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhc--
Confidence 356776665543 234 56666777776654 345799999999999999865 346665554444444443
Q ss_pred CCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCC
Q 000609 314 DRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKS 393 (1393)
Q Consensus 314 D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK 393 (1393)
-.+|-||.-+|=.++++...-|.. +......|-.||+|.+..||..|+.++.-+.....-.|-. .+..+|--+-|-.
T Consensus 972 sp~p~IRsN~VvalgDlav~fpnl--ie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiKVKG-ql~eMA~cl~D~~ 1048 (1251)
T KOG0414|consen 972 SPSPRIRSNLVVALGDLAVRFPNL--IEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIKVKG-QLSEMALCLEDPN 1048 (1251)
T ss_pred CCCceeeecchheccchhhhcccc--cchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhHhcc-cHHHHHHHhcCCc
Confidence 346889999999999988877753 4467889999999999999999999998776655443332 2446677788888
Q ss_pred hhHHHHHH
Q 000609 394 VLVKRYTM 401 (1393)
Q Consensus 394 ~~VR~eAm 401 (1393)
..||.-|=
T Consensus 1049 ~~IsdlAk 1056 (1251)
T KOG0414|consen 1049 AEISDLAK 1056 (1251)
T ss_pred HHHHHHHH
Confidence 87665443
No 52
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=92.54 E-value=2.6 Score=53.30 Aligned_cols=110 Identities=24% Similarity=0.289 Sum_probs=88.5
Q ss_pred HHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000609 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1393)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1393)
+.-...|+-+...++.|++-|+...+-.|.+|.+.+..+|--+ +.+....+..-..-.+|..|++.-||...++.+..+
T Consensus 335 qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~-sk~~~~r~ev~~lv~r~lqDrss~VRrnaikl~SkL 413 (1128)
T COG5098 335 QMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLN-SKTVGRRHEVIRLVGRRLQDRSSVVRRNAIKLCSKL 413 (1128)
T ss_pred hhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCc-ccccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence 3556778889999999999999999999999999999999875 467777778888889999999999999999999999
Q ss_pred HhcCCCCCC-----------------hHHHH---HHHHHHhCCchhHHHHH
Q 000609 331 LLTDPSRAD-----------------APQIL---TALCDRLLDFDENVRKQ 361 (1393)
Q Consensus 331 L~~~p~~~~-----------------~~ei~---~~L~~rL~D~DekVR~a 361 (1393)
|+.||-..+ +.++. +.+++++.|+++.|-..
T Consensus 414 L~~HPF~~~h~~~l~~~~wek~L~~~E~qlNslk~~~qe~l~D~E~Eveqd 464 (1128)
T COG5098 414 LMRHPFASEHGSQLRLTLWEKNLGSAENQLNSLKSGLQETLCDGEKEVEQD 464 (1128)
T ss_pred HhcCChhhhccchhhhHHHHhhcchhHhHhhccchhhhccccchHHhhhhh
Confidence 999984211 01221 35566778887776643
No 53
>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=92.51 E-value=42 Score=43.40 Aligned_cols=56 Identities=20% Similarity=0.347 Sum_probs=45.4
Q ss_pred cCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhh
Q 000609 141 DLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSAL 197 (1393)
Q Consensus 141 DL~-~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l 197 (1393)
+++ -+|++..+|.+++... +....+|..-.+.|+..+.+|--.|+.+|-+.|...+
T Consensus 75 q~d~e~DlV~~~f~hlLRg~-Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l 131 (892)
T KOG2025|consen 75 QLDKEEDLVAGTFYHLLRGT-ESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKL 131 (892)
T ss_pred ccCchhhHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHH
Confidence 444 5779999999888743 4567789999999999999998899999888777554
No 54
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=92.36 E-value=0.19 Score=38.72 Aligned_cols=29 Identities=24% Similarity=0.263 Sum_probs=22.8
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHhhh
Q 000609 343 ILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1393)
Q Consensus 343 i~~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1393)
|++.+.+.+.|++++||.+|+.++++++.
T Consensus 1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~ 29 (31)
T PF02985_consen 1 LLPILLQLLNDPSPEVRQAAAECLGAIAE 29 (31)
T ss_dssp HHHHHHHHHT-SSHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHcCCCCHHHHHHHHHHHHHHHh
Confidence 46677888889999999999998887764
No 55
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=91.62 E-value=0.12 Score=44.83 Aligned_cols=52 Identities=23% Similarity=0.206 Sum_probs=35.8
Q ss_pred hhHHHHHHHHhHHHHhcCCC--CCChHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 000609 317 VAVRMSVLEHVKSCLLTDPS--RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1393)
Q Consensus 317 ~~VR~~~v~~~~~iL~~~p~--~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~ 368 (1393)
|.||...+...+.+....+. .....++++.|...|.|+++.||.+|+.+++.
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~ 54 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGN 54 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 46788888877764333321 11235778888888888888888888887764
No 56
>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]. The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.
Probab=91.41 E-value=0.81 Score=51.11 Aligned_cols=148 Identities=16% Similarity=0.152 Sum_probs=89.0
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHHH----HHHhcccCCChhHHHHHHHHhHHHHhcCCC
Q 000609 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFS----EFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1393)
Q Consensus 262 ~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~~~~~~~~~~w~----~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~ 336 (1393)
++.+.|+..-...|=..|..|.+.|-.++... ...+...+.+..+ .+....+|.-..|-...+.+...+...-..
T Consensus 7 ~~~~~l~~~~~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~ 86 (228)
T PF12348_consen 7 EILAALEKKESESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGS 86 (228)
T ss_dssp GS-TTHHHHHT-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHhccCCccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhH
Confidence 44455555556789999999999999999875 2233444444444 444455554444444444444443322111
Q ss_pred --CCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHH-HHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000609 337 --RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVET-VKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 337 --~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~-L~~l~eR~rDKK~~VR~eAm~~La~lY~~~ 411 (1393)
......+++.|.+++.|+-.-||.+|..++..+..... .+..+ +..+..-+.+|++.||..++..|..+-..+
T Consensus 87 ~~~~~~~~~l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~--~~~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~ 162 (228)
T PF12348_consen 87 HFEPYADILLPPLLKKLGDSKKFIREAANNALDAIIESCS--YSPKILLEILSQGLKSKNPQVREECAEWLAIILEKW 162 (228)
T ss_dssp GGHHHHHHHHHHHHHGGG---HHHHHHHHHHHHHHHTTS---H--HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-
T ss_pred hHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHCC--cHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHc
Confidence 12245788999999999999999999999987766432 23566 678888999999999999999998887765
No 57
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.00 E-value=24 Score=48.91 Aligned_cols=356 Identities=15% Similarity=0.214 Sum_probs=170.6
Q ss_pred HHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcc---------------hhhhcCCCcchHHHHHHHH--HHHHhhcC
Q 000609 26 LVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQ---------------PVLLKHQDKDVKLLVATCI--CEITRITA 88 (1393)
Q Consensus 26 LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~---------------~~LL~HkD~~Vr~~vAcCL--adIlRI~A 88 (1393)
+-.-|++|-=.|..+.=||..-..+++..+-+.|+. .=|=+=.++.-|+--|||| +|++|=
T Consensus 992 l~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g-- 1069 (1702)
T KOG0915|consen 992 LEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQG-- 1069 (1702)
T ss_pred hhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcC--
Confidence 333444444445555444443344455444444443 3333448899999999996 599994
Q ss_pred CCCCCCh--hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCC----chHHHHHH-----------
Q 000609 89 PEAPYSD--DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE----CDELVNEM----------- 151 (1393)
Q Consensus 89 PdaPytd--~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~----~~~Li~~l----------- 151 (1393)
.|+++ +.|.+++...++.-..+.+. --.--.-....|+ |.||-+||.. +.+.+.-+
T Consensus 1070 --~~~~~~~e~lpelw~~~fRvmDDIKEs---VR~aa~~~~~~ls--Kl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims 1142 (1702)
T KOG0915|consen 1070 --RPFDQVKEKLPELWEAAFRVMDDIKES---VREAADKAARALS--KLCVRICDVTNGAKGKEALDIILPFLLDEGIMS 1142 (1702)
T ss_pred --CChHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHH--HHHhhhcccCCcccHHHHHHHHHHHHhccCccc
Confidence 66665 56777777776654433321 1111122333333 3467777753 12222211
Q ss_pred ---------HHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc------------------------
Q 000609 152 ---------YSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG------------------------ 198 (1393)
Q Consensus 152 ---------F~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~------------------------ 198 (1393)
..++.+++ +.-++.+..+..+..-.+++-.+.+.+.||..+--.+.
T Consensus 1143 ~v~evr~~si~tl~dl~-Kssg~~lkP~~~~LIp~ll~~~s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi 1221 (1702)
T KOG0915|consen 1143 KVNEVRRFSIGTLMDLA-KSSGKELKPHFPKLIPLLLNAYSELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETI 1221 (1702)
T ss_pred chHHHHHHHHHHHHHHH-HhchhhhcchhhHHHHHHHHHccccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHH
Confidence 12222222 12233344455555555555555555555554432220
Q ss_pred ----------------------------CCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCchhHH-HHH
Q 000609 199 ----------------------------RNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYH-EVI 249 (1393)
Q Consensus 199 ----------------------------~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h-~Li 249 (1393)
-+.+..+..+-..+..+|..-|.|+.-.+|+-++.|-.....+..+++ .-.
T Consensus 1222 ~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP~sgKll~al~~g~~dRNesv~kafAsAm 1301 (1702)
T KOG0915|consen 1222 NKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTPYSGKLLRALFPGAKDRNESVRKAFASAM 1301 (1702)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCcchhHHHHHHhhccccccHHHHHHHHHHH
Confidence 000113334444444455555555555555555544211111111111 111
Q ss_pred HHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHH--HHHhcccCCChhHHHHHHHH
Q 000609 250 YDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS--EFLKRLTDRIVAVRMSVLEH 326 (1393)
Q Consensus 250 ~eL~~~-~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~--~fL~R~~D~s~~VR~~~v~~ 326 (1393)
--|.++ .|+=-...+-.+-.++..+++..+..+..++.+ |+....+....|.+.+- .||.++.+ .-+.=-.|-+.
T Consensus 1302 G~L~k~Ss~dq~qKLie~~l~~~l~k~es~~siscatis~-Ian~s~e~Lkn~asaILPLiFLa~~ee-~Ka~q~Lw~dv 1379 (1702)
T KOG0915|consen 1302 GYLAKFSSPDQMQKLIETLLADLLGKDESLKSISCATISN-IANYSQEMLKNYASAILPLIFLAMHEE-EKANQELWNDV 1379 (1702)
T ss_pred HHHHhcCChHHHHHHHHHHHHHHhccCCCccchhHHHHHH-HHHhhHHHHHhhHHHHHHHHHHHHhHH-HHHHHHHHHHH
Confidence 112222 443444444444455555666666777777776 55544344444444443 45555554 11111111111
Q ss_pred hHHHHhcCCCC--CChHHHHHHHHHHh-CCchhHHHHHHHHHHHHhhhhhcCCCCHHH--------HHHHHHhhccCC
Q 000609 327 VKSCLLTDPSR--ADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVET--------VKLVAERLRDKS 393 (1393)
Q Consensus 327 ~~~iL~~~p~~--~~~~ei~~~L~~rL-~D~DekVR~aaV~ai~~la~~~l~~v~~e~--------L~~l~eR~rDKK 393 (1393)
--.+....-.+ -...+++..+++-. .+.-.++|.++.+++..++......+|.+. +.++..|+=|=|
T Consensus 1380 W~e~vsggagtvrl~~~eiLn~iceni~nn~~w~lr~q~Akai~~~a~~~sss~~~p~ilkl~~~ll~~L~GRiwdGK 1457 (1702)
T KOG0915|consen 1380 WAELVSGGAGTVRLYLLEILNLICENITNNESWKLRKQAAKAIRVIAEGLSSSAPIPVILKLALSLLDTLNGRIWDGK 1457 (1702)
T ss_pred HHHhCCCCcchhhhhHHHHHHHHHHHhccchHHHHHHHHHHHHHHHcccccccCChHHHHHHHHHHHHHhhccccccH
Confidence 11111000000 01235666666654 455599999999999998887777777543 345666665443
No 58
>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain
Probab=90.99 E-value=10 Score=44.57 Aligned_cols=125 Identities=17% Similarity=0.218 Sum_probs=82.1
Q ss_pred HHHHHhhcCCCCChhhhcH--HHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHH
Q 000609 284 GLVGDLFAVPGSANNEQFH--SVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRK 360 (1393)
Q Consensus 284 ~llG~mfs~~~~~~~~~~~--~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~ 360 (1393)
..++.|+......+..... +++..++-. ..-.++.||..-+++.+-+-.-+. ..+.+-+.-+...+...++.||.
T Consensus 5 ~i~~~lL~~~~~~~~~~~~l~~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~--~~a~~~l~l~~~~~~~~~~~v~~ 82 (298)
T PF12719_consen 5 SITQSLLENVSSSLSPNISLESLLDSLILPAVQSSDPAVRELALKCLGLCCLLDK--ELAKEHLPLFLQALQKDDEEVKI 82 (298)
T ss_pred HHHHHHHHhccccCCCcchHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCh--HHHHHHHHHHHHHHHhCCHHHHH
Confidence 3444555443322222222 677776632 333467999999999986554433 33455555555555444999999
Q ss_pred HHHHHHHHhhhh-hcCC---CC--------HHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 361 QVVAVICDVACH-ALNS---IP--------VETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 361 aaV~ai~~la~~-~l~~---v~--------~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
.++++++|+... .+.. -+ ..+++.+..-+.+-...||..|.+++++|+-.
T Consensus 83 ~al~~l~Dll~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~ 144 (298)
T PF12719_consen 83 TALKALFDLLLTHGIDIFDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLS 144 (298)
T ss_pred HHHHHHHHHHHHcCchhccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhc
Confidence 999999999863 2222 22 24567777777777889999999999998875
No 59
>PF13001 Ecm29: Proteasome stabiliser; InterPro: IPR024372 The proteasome (or macropain) (3.4.25.1 from EC) [, , , , ] is a eukaryotic and archaeal multicatalytic proteinase complex that seems to be involved in an ATP/ubiquitin-dependent nonlysosomal proteolytic pathway. In eukaryotes the proteasome is composed of about 28 distinct subunits which form a highly ordered ring-shaped structure (20S ring) of about 700 kDa. Most proteasome subunits can be classified, on the basis on sequence similarities into two groups, alpha (A) and beta (B). Ecm29 tethers the proteasome core particle to the regulatory particle, stabilising the interaction between these two components [, , ].
Probab=90.74 E-value=9.3 Score=48.39 Aligned_cols=129 Identities=19% Similarity=0.173 Sum_probs=88.9
Q ss_pred Hhhcchhhhhhhhhhc----ccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhH
Q 000609 253 YRCSPQILSGVVPYLT----GELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1393)
Q Consensus 253 ~~~~P~lL~~ViP~Le----~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~ 328 (1393)
-.+.|.++...+|.++ ....+++...|..|=+++|.+..... .+....-++..-+.....+-.++||..+-++..
T Consensus 361 ~~l~~~i~~~g~p~~~~~~~~~~~~~~~~lR~~aYe~lG~L~~~~p-~l~~~d~~li~~LF~sL~~~~~evr~sIqeALs 439 (501)
T PF13001_consen 361 KLLRPVILSQGWPLIQDSSSQSNSSEDIELRSLAYETLGLLAKRAP-SLFSKDLSLIEFLFDSLEDESPEVRVSIQEALS 439 (501)
T ss_pred HHHHHHHHhcCccccccccccCCCcccHHHHHHHHHHHHHHHccCc-ccccccHHHHHHHHHHhhCcchHHHHHHHHHHH
Confidence 3667777888888884 34667899999999999999887654 334344555556667778889999999999998
Q ss_pred HHHhcCCCCCC-----hHHHHH-HHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHH
Q 000609 329 SCLLTDPSRAD-----APQILT-ALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKL 384 (1393)
Q Consensus 329 ~iL~~~p~~~~-----~~ei~~-~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~ 384 (1393)
.++.+-+.... ...... .+.....+..-.+|.+||+-.. +|..+++++...+..
T Consensus 440 sl~~af~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~R~~avk~an--~~fpf~d~~aR~i~i 499 (501)
T PF13001_consen 440 SLAPAFKDLPDDEDEQKRLLLELLLLSYIQSEVRSCRYAAVKYAN--ACFPFSDVPARYICI 499 (501)
T ss_pred HHHHHHhccccchhHHHHHHHHHHHHhhccchhHHHHHHHHHHHH--HhCCccchHHHHHHh
Confidence 87654332111 111122 2233345677789999999877 578888887765543
No 60
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=90.50 E-value=2 Score=41.98 Aligned_cols=87 Identities=22% Similarity=0.294 Sum_probs=70.3
Q ss_pred HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC-CCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000609 302 HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP-SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1393)
Q Consensus 302 ~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p-~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e 380 (1393)
..+|+.++.-.+|..++||..-+....+.+.++. .......++..+..-|.|+|.=|=+.||+.++.++... |.+
T Consensus 2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~----p~~ 77 (92)
T PF10363_consen 2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESKSEPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRH----PDE 77 (92)
T ss_pred hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHC----hHH
Confidence 3678999999999999999999999999888765 33445678888999999999999999999999888765 334
Q ss_pred HHHHHHHhhccC
Q 000609 381 TVKLVAERLRDK 392 (1393)
Q Consensus 381 ~L~~l~eR~rDK 392 (1393)
++..+.++-.|+
T Consensus 78 vl~~L~~~y~~~ 89 (92)
T PF10363_consen 78 VLPILLDEYADP 89 (92)
T ss_pred HHHHHHHHHhCc
Confidence 555555555444
No 61
>KOG2259 consensus Uncharacterized conserved protein [Function unknown]
Probab=90.39 E-value=0.43 Score=59.78 Aligned_cols=97 Identities=26% Similarity=0.291 Sum_probs=83.6
Q ss_pred HHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHH
Q 000609 306 SEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLV 385 (1393)
Q Consensus 306 ~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l 385 (1393)
-+|+--+.|-=-+||.+.|.....+-.++|.. +..-++.|-+.++|-.+.||+.++.++.-++.+ -.+.++.+..+
T Consensus 376 GA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~F--A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~--l~i~eeql~~i 451 (823)
T KOG2259|consen 376 GALVHGLEDEFYEVRRAAVASLCSLATSSPGF--AVRALDFLVDMFNDEIEVVRLKAIFALTMISVH--LAIREEQLRQI 451 (823)
T ss_pred ceeeeechHHHHHHHHHHHHHHHHHHcCCCCc--HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHH--heecHHHHHHH
Confidence 56666777777899999999999988888876 447889999999999999999999999988777 56788999999
Q ss_pred HHhhccCChhHHHHHHHHHHH
Q 000609 386 AERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 386 ~eR~rDKK~~VR~eAm~~La~ 406 (1393)
.+=+.|..+.||...-+.|+.
T Consensus 452 l~~L~D~s~dvRe~l~elL~~ 472 (823)
T KOG2259|consen 452 LESLEDRSVDVREALRELLKN 472 (823)
T ss_pred HHHHHhcCHHHHHHHHHHHHh
Confidence 999999999999987777654
No 62
>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.92 E-value=15 Score=47.74 Aligned_cols=165 Identities=18% Similarity=0.241 Sum_probs=102.4
Q ss_pred HHHHHHHHHHHHhcc-------cccccHHHHHH-HH---HhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCC
Q 000609 167 VLSSMQTIMIVLLEE-------SEDIQEDLLVI-LL---SALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGD 235 (1393)
Q Consensus 167 v~~~m~~IL~~vI~E-------se~vp~~vLd~-IL---~~l~~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d 235 (1393)
+...+..||..++.- ...||...|.+ || .-++++.. ..+|.|.--+.|-+++.=+.
T Consensus 220 l~~~lV~iLk~l~~~~yspeydv~gi~dPFLQi~iLrlLriLGq~d~------------daSd~M~DiLaqvatntdss- 286 (866)
T KOG1062|consen 220 LVPSLVKILKQLTNSGYSPEYDVHGISDPFLQIRILRLLRILGQNDA------------DASDLMNDILAQVATNTDSS- 286 (866)
T ss_pred HHHHHHHHHHHHhcCCCCCccCccCCCchHHHHHHHHHHHHhcCCCc------------cHHHHHHHHHHHHHhccccc-
Confidence 444555566666554 12377777763 22 33455532 33455555555555542111
Q ss_pred CCCCCCch-hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC------------------CC
Q 000609 236 SRPGHSHI-DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG------------------SA 296 (1393)
Q Consensus 236 ~~~~~~~~-~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~------------------~~ 296 (1393)
.+.+. -.||-+..|+.+- .+..+|.+|+..||+-++.++ .+
T Consensus 287 ---kN~GnAILYE~V~TI~~I~-----------------~~~~LrvlainiLgkFL~n~d~NirYvaLn~L~r~V~~d~~ 346 (866)
T KOG1062|consen 287 ---KNAGNAILYECVRTIMDIR-----------------SNSGLRVLAINILGKFLLNRDNNIRYVALNMLLRVVQQDPT 346 (866)
T ss_pred ---ccchhHHHHHHHHHHHhcc-----------------CCchHHHHHHHHHHHHhcCCccceeeeehhhHHhhhcCCcH
Confidence 11111 1455555555442 345667777777777776653 34
Q ss_pred hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh
Q 000609 297 NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1393)
Q Consensus 297 ~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1393)
.+++|+.+--+ ...|.++.||...+|..-.++..+. ...+++.|.+-|.-.|+.+|...+..|+.++.
T Consensus 347 avqrHr~tIle---CL~DpD~SIkrralELs~~lvn~~N----v~~mv~eLl~fL~~~d~~~k~~~as~I~~laE 414 (866)
T KOG1062|consen 347 AVQRHRSTILE---CLKDPDVSIKRRALELSYALVNESN----VRVMVKELLEFLESSDEDFKADIASKIAELAE 414 (866)
T ss_pred HHHHHHHHHHH---HhcCCcHHHHHHHHHHHHHHhcccc----HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence 68888887655 4579999999999999877655432 45777777777777899999998888887764
No 63
>cd00020 ARM Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.
Probab=89.89 E-value=0.56 Score=45.87 Aligned_cols=99 Identities=15% Similarity=0.104 Sum_probs=71.4
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhcCCCC--C-ChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcC----CCCHHH
Q 000609 309 LKRLTDRIVAVRMSVLEHVKSCLLTDPSR--A-DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN----SIPVET 381 (1393)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~iL~~~p~~--~-~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~----~v~~e~ 381 (1393)
+.-..|.++.+|...+.+...+-...|.. . ....+++.|.+.|.|+|.+||..++.+++.++..... .+...+
T Consensus 13 ~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~g~ 92 (120)
T cd00020 13 VSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPEDNKLIVLEAGG 92 (120)
T ss_pred HHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcHHHHHHHHHCCC
Confidence 33334555788888888877755543321 0 0125678888889999999999999999999764321 122335
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 382 VKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 382 L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
+..+.+.+.+.+..||+.|+..|+.+
T Consensus 93 l~~l~~~l~~~~~~~~~~a~~~l~~l 118 (120)
T cd00020 93 VPKLVNLLDSSNEDIQKNATGALSNL 118 (120)
T ss_pred hHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 77888999999999999999999876
No 64
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.53 E-value=76 Score=41.50 Aligned_cols=144 Identities=16% Similarity=0.181 Sum_probs=89.4
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHH----
Q 000609 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL---- 331 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL---- 331 (1393)
+|+.-...--++...|...++..+..|.+.+=.|+.. | +.+|++...- -||.=. +|-.=++..-.+.
T Consensus 14 ~p~~e~~~~~~ik~~Lek~~~~~KIeamK~ii~~mln-G----e~~p~Llm~I-iRfvlp---s~~~elKKLly~ywE~v 84 (948)
T KOG1058|consen 14 SPDGEPMSEDEIKEKLEKGDDEVKIEAMKKIIALMLN-G----EDLPSLLMTI-IRFVLP---SRNHELKKLLYYYWELV 84 (948)
T ss_pred CCcccccchHHHHHHHhcCChHHHHHHHHHHHHHHHc-C----CCchHHHHHH-hheeec---cCchHHHHHHHHHHHHc
Confidence 3444344444677789999999999999988777765 3 4555655432 233321 1211111111111
Q ss_pred -hcCCCCCChHH---HHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 332 -LTDPSRADAPQ---ILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 332 -~~~p~~~~~~e---i~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
.+++++..-.| +.+++++=|.-|.|=||-.+..-+|.+--..+ =+.++-++..-+--++.=||+.|+-.+..+
T Consensus 85 PKt~~dgkl~~EMILvcna~RkDLQHPNEyiRG~TLRFLckLkE~EL---lepl~p~IracleHrhsYVRrNAilaifsI 161 (948)
T KOG1058|consen 85 PKTDSDGKLLHEMILVCNAYRKDLQHPNEYIRGSTLRFLCKLKEPEL---LEPLMPSIRACLEHRHSYVRRNAILAIFSI 161 (948)
T ss_pred cccCCCcccHHHHHHHHHHHhhhccCchHhhcchhhhhhhhcCcHHH---hhhhHHHHHHHHhCcchhhhhhhheeehhH
Confidence 23333322233 34788889999999999999999886543221 112334555555667889999999999999
Q ss_pred HHHh
Q 000609 408 FRGC 411 (1393)
Q Consensus 408 Y~~~ 411 (1393)
|+..
T Consensus 162 yk~~ 165 (948)
T KOG1058|consen 162 YKNF 165 (948)
T ss_pred Hhhh
Confidence 9973
No 65
>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=89.44 E-value=2.8 Score=53.06 Aligned_cols=134 Identities=19% Similarity=0.243 Sum_probs=94.0
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 324 (1393)
.-..+..|-...|.+.+--+-++..-|.++.-..|--.++..|.+.... .+ | + +|+
T Consensus 282 islFl~kls~l~p~i~lrq~~~~~~LLdses~tlRc~~~EicaN~V~~~----~~--------------d--~----qm~ 337 (1128)
T COG5098 282 ISLFLNKLSELSPGIMLRQYEHFDELLDSESFTLRCCFLEICANLVEHF----KK--------------D--G----QMV 337 (1128)
T ss_pred HHHHHHHHhhcCchHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHH----hc--------------c--h----hhH
Confidence 4455667777788887777777777777777777777777777655431 10 1 1 555
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC--CHHHHHHHHHhhccCChhHHHHHHH
Q 000609 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI--PVETVKLVAERLRDKSVLVKRYTME 402 (1393)
Q Consensus 325 ~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v--~~e~L~~l~eR~rDKK~~VR~eAm~ 402 (1393)
++.++- ..+++.-|.+||.|+-.-+|-.|++++..+--.....+ -.++.+.++.|+-||..-||+.|+.
T Consensus 338 e~~~~~---------~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk~~~~r~ev~~lv~r~lqDrss~VRrnaik 408 (1128)
T COG5098 338 EHYKQK---------LNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSKTVGRRHEVIRLVGRRLQDRSSVVRRNAIK 408 (1128)
T ss_pred hhHHHH---------HHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 555542 24688888999999999999888877665432222222 3467889999999999999999999
Q ss_pred HHHHHHHHh
Q 000609 403 RLADIFRGC 411 (1393)
Q Consensus 403 ~La~lY~~~ 411 (1393)
.+++|.-.+
T Consensus 409 l~SkLL~~H 417 (1128)
T COG5098 409 LCSKLLMRH 417 (1128)
T ss_pred HHHHHHhcC
Confidence 999987655
No 66
>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region
Probab=89.15 E-value=0.89 Score=44.74 Aligned_cols=84 Identities=21% Similarity=0.205 Sum_probs=62.4
Q ss_pred HHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--CChHHHHHHHHHHhCCchh
Q 000609 279 RLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR--ADAPQILTALCDRLLDFDE 356 (1393)
Q Consensus 279 Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~--~~~~ei~~~L~~rL~D~De 356 (1393)
|..+.-.|+.+--+-+.......+.+-..-|.-|.|.++.||....|+..+|....... .--.+|.++|.+.+.|+|+
T Consensus 3 R~ggli~Laa~ai~l~~~~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d~ 82 (97)
T PF12755_consen 3 RKGGLIGLAAVAIALGKDISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPDE 82 (97)
T ss_pred hhHHHHHHHHHHHHchHhHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCch
Confidence 44444445544332233456666788888899999999999999999999987654321 1135899999999999999
Q ss_pred HHHHHH
Q 000609 357 NVRKQV 362 (1393)
Q Consensus 357 kVR~aa 362 (1393)
.||.+|
T Consensus 83 ~Vr~~a 88 (97)
T PF12755_consen 83 NVRSAA 88 (97)
T ss_pred hHHHHH
Confidence 999985
No 67
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=88.73 E-value=0.54 Score=39.11 Aligned_cols=39 Identities=28% Similarity=0.428 Sum_probs=29.6
Q ss_pred hHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 000609 327 VKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1393)
Q Consensus 327 ~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~a 365 (1393)
...++...|.....+++.+.+..||.|++..||.+||..
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~l 41 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDL 41 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 345566666655566888899999999999999988765
No 68
>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B ....
Probab=88.69 E-value=0.37 Score=41.69 Aligned_cols=52 Identities=15% Similarity=0.109 Sum_probs=41.6
Q ss_pred hHHHHHHHHHHHHhhhhhcC---CCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 356 ENVRKQVVAVICDVACHALN---SIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 356 ekVR~aaV~ai~~la~~~l~---~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
+.||.+++.+++.++..... ..-.+++..|...++|-...||..|...||+|
T Consensus 1 p~vR~~A~~aLg~l~~~~~~~~~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l 55 (55)
T PF13513_consen 1 PRVRRAAAWALGRLAEGCPELLQPYLPELLPALIPLLQDDDDSVRAAAAWALGNL 55 (55)
T ss_dssp HHHHHHHHHHHHCTTTTTHHHHHHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhHhcccHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 47999999999976643322 23446788999999999999999999999875
No 69
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.42 E-value=17 Score=47.21 Aligned_cols=259 Identities=19% Similarity=0.176 Sum_probs=142.7
Q ss_pred hhhhcCCCcchHHHHHHHHHHH----HhhcCCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhh-hhh
Q 000609 62 PVLLKHQDKDVKLLVATCICEI----TRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKY-RSC 136 (1393)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadI----lRI~APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~v-ks~ 136 (1393)
...|.||+.-|-.=+|--++.+ -|+.+| .. .+.++|++. |....--..+-+|-.+|-. =.-
T Consensus 251 ~s~l~~K~emV~~EaArai~~l~~~~~r~l~p----av----s~Lq~flss------p~~~lRfaAvRtLnkvAm~~P~~ 316 (865)
T KOG1078|consen 251 ESCLRHKSEMVIYEAARAIVSLPNTNSRELAP----AV----SVLQLFLSS------PKVALRFAAVRTLNKVAMKHPQA 316 (865)
T ss_pred HHHHhchhHHHHHHHHHHHhhccccCHhhcch----HH----HHHHHHhcC------cHHHHHHHHHHHHHHHHHhCCcc
Confidence 3456777777766666555443 244455 22 233444322 2222112234445555532 223
Q ss_pred hhcccCCchHHHHHH--------HHHHHHhhcCCChhhHHHHHHHHHHHH---hcccccccHHHHHHHHHhhcCCCcHHH
Q 000609 137 VVMLDLECDELVNEM--------YSTFFAVASDDHPESVLSSMQTIMIVL---LEESEDIQEDLLVILLSALGRNKNDTA 205 (1393)
Q Consensus 137 vl~~DL~~~~Li~~l--------F~~ff~~v~~~~~~~v~~~m~~IL~~v---I~Ese~vp~~vLd~IL~~l~~~~~~~a 205 (1393)
|.+|.++-+.||.+. ..+.+. .+...+|...|-.|-+.+ =+|.--|--+-+..+...++
T Consensus 317 v~~cN~elE~lItd~NrsIat~AITtLLK---TG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp------- 386 (865)
T KOG1078|consen 317 VTVCNLDLESLITDSNRSIATLAITTLLK---TGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFP------- 386 (865)
T ss_pred ccccchhHHhhhcccccchhHHHHHHHHH---hcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhcc-------
Confidence 344555544444332 222333 234556666666554443 33433343333333333332
Q ss_pred HHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHH
Q 000609 206 RRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGL 285 (1393)
Q Consensus 206 ~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~l 285 (1393)
+.....-.|+.+++.++++ .+-.....+.|..+-+..|+.=-.-+-.|..-. ||-+.+..||+.
T Consensus 387 -------------~k~~~~m~FL~~~Lr~eGg-~e~K~aivd~Ii~iie~~pdsKe~~L~~LCefI--EDce~~~i~~rI 450 (865)
T KOG1078|consen 387 -------------RKHTVMMNFLSNMLREEGG-FEFKRAIVDAIIDIIEENPDSKERGLEHLCEFI--EDCEFTQIAVRI 450 (865)
T ss_pred -------------HHHHHHHHHHHHHHHhccC-chHHHHHHHHHHHHHHhCcchhhHHHHHHHHHH--HhccchHHHHHH
Confidence 2334445667777765322 112223567777777877775433333333221 456778899999
Q ss_pred HHHhhcCCCCChhhhcHHHHHHH-HhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHH
Q 000609 286 VGDLFAVPGSANNEQFHSVFSEF-LKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVA 364 (1393)
Q Consensus 286 lG~mfs~~~~~~~~~~~~~w~~f-L~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ 364 (1393)
++.+--. | -....|+-|-.| .+|..=-+..||.+.|.+...|....+.. .+-|...|.++++|.|+.||-.|--
T Consensus 451 LhlLG~E-g--P~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~~~~l--~~sI~vllkRc~~D~DdevRdrAtf 525 (865)
T KOG1078|consen 451 LHLLGKE-G--PKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQDVVL--LPSILVLLKRCLNDSDDEVRDRATF 525 (865)
T ss_pred HHHHhcc-C--CCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCCCc--cccHHHHHHHHhcCchHHHHHHHHH
Confidence 9866543 2 123445555544 46777778899999999999999666543 3468899999999999999988533
Q ss_pred H
Q 000609 365 V 365 (1393)
Q Consensus 365 a 365 (1393)
.
T Consensus 526 ~ 526 (865)
T KOG1078|consen 526 Y 526 (865)
T ss_pred H
Confidence 3
No 70
>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]
Probab=87.87 E-value=89 Score=39.69 Aligned_cols=52 Identities=29% Similarity=0.311 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhc
Q 000609 623 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGG 674 (1393)
Q Consensus 623 ~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k 674 (1393)
..+-+|+++|+.+|..+|+.-..+-.++-+++.+.|-.+..-++-+|-+.|.
T Consensus 318 ~~rFsA~Riln~lam~~P~kv~vcN~evEsLIsd~Nr~IstyAITtLLKTGt 369 (898)
T COG5240 318 VLRFSAMRILNQLAMKYPQKVSVCNKEVESLISDENRTISTYAITTLLKTGT 369 (898)
T ss_pred HHHHHHHHHHHHHHhhCCceeeecChhHHHHhhcccccchHHHHHHHHHcCc
Confidence 3456799999999999999999998888888898887666667777767664
No 71
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=87.72 E-value=3.6 Score=50.65 Aligned_cols=108 Identities=15% Similarity=-0.038 Sum_probs=50.0
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhC
Q 000609 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1393)
Q Consensus 273 se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1393)
..++.+|..|.+-||.+=.. ..-...+.-..|.+|.||...+..++. +. . +-.+.+..-|.
T Consensus 97 d~~~~vr~aaa~ALg~i~~~----------~a~~~L~~~L~~~~p~vR~aal~al~~----r~--~---~~~~~L~~~L~ 157 (410)
T TIGR02270 97 AGPEGLCAGIQAALGWLGGR----------QAEPWLEPLLAASEPPGRAIGLAALGA----HR--H---DPGPALEAALT 157 (410)
T ss_pred CCCHHHHHHHHHHHhcCCch----------HHHHHHHHHhcCCChHHHHHHHHHHHh----hc--c---ChHHHHHHHhc
Confidence 35555666666666532211 112222223345566666655544432 00 0 11233444445
Q ss_pred CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000609 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 353 D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~ 406 (1393)
|.|..||.++|.+++.+-.. . .+..|..-+.|..+.||..|+.+|+.
T Consensus 158 d~d~~Vra~A~raLG~l~~~--~-----a~~~L~~al~d~~~~VR~aA~~al~~ 204 (410)
T TIGR02270 158 HEDALVRAAALRALGELPRR--L-----SESTLRLYLRDSDPEVRFAALEAGLL 204 (410)
T ss_pred CCCHHHHHHHHHHHHhhccc--c-----chHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 66666666666666643211 1 11112233566666666666666643
No 72
>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]
Probab=87.69 E-value=14 Score=46.95 Aligned_cols=216 Identities=17% Similarity=0.187 Sum_probs=133.8
Q ss_pred cHHHHHHHHHhhcCCCcH---HHHHHHHH-HHHHhhhhhhHHHHHHHHHhhcC--CCCCCCCchhHHHHHHHHHhh----
Q 000609 186 QEDLLVILLSALGRNKND---TARRLAMN-VIEQCAGKLEAGIKQFLVSSMSG--DSRPGHSHIDYHEVIYDVYRC---- 255 (1393)
Q Consensus 186 p~~vLd~IL~~l~~~~~~---~a~~lA~~-vi~~~~dkl~~~i~q~f~~~l~~--d~~~~~~~~~~h~Li~eL~~~---- 255 (1393)
+..+++.+-..+...++. .+.-+|-. .|..-..-.+||+..+|..++.. |... .-...+.+-+..+-++
T Consensus 172 ~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg~~~EPyiv~~lp~il~~~~d~~~-~Vr~Aa~~a~kai~~~~~~~ 250 (569)
T KOG1242|consen 172 EFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLGPPFEPYIVPILPSILTNFGDKIN-KVREAAVEAAKAIMRCLSAY 250 (569)
T ss_pred hhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcCCCCCchHHhhHHHHHHHhhccch-hhhHHHHHHHHHHHHhcCcc
Confidence 345566665555433221 12222222 22233345789999999988753 3111 1111233444444444
Q ss_pred -cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHH--h
Q 000609 256 -SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL--L 332 (1393)
Q Consensus 256 -~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL--~ 332 (1393)
++.+|.+.++.+... .=..-..+++++|-|-......+....|++--..-....|..|+||-+-.++...+= .
T Consensus 251 aVK~llpsll~~l~~~----kWrtK~aslellg~m~~~ap~qLs~~lp~iiP~lsevl~DT~~evr~a~~~~l~~~~svi 326 (569)
T KOG1242|consen 251 AVKLLLPSLLGSLLEA----KWRTKMASLELLGAMADCAPKQLSLCLPDLIPVLSEVLWDTKPEVRKAGIETLLKFGSVI 326 (569)
T ss_pred hhhHhhhhhHHHHHHH----hhhhHHHHHHHHHHHHHhchHHHHHHHhHhhHHHHHHHccCCHHHHHHHHHHHHHHHHhh
Confidence 455666666666553 445667899999977766555777888999999999999999999998887766532 2
Q ss_pred cCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh-hhcCCCCHHHH-HHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETV-KLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 333 ~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~v~~e~L-~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
.|| ++.-+++.|.+++-||..+|... ++.+....+ +.....+-.++ -.|..-+.++....++.|..-.+++++.
T Consensus 327 dN~---dI~~~ip~Lld~l~dp~~~~~e~-~~~L~~ttFV~~V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~L 402 (569)
T KOG1242|consen 327 DNP---DIQKIIPTLLDALADPSCYTPEC-LDSLGATTFVAEVDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKL 402 (569)
T ss_pred ccH---HHHHHHHHHHHHhcCcccchHHH-HHhhcceeeeeeecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHh
Confidence 233 46778899999999999888765 444442221 11222222333 3444556667778888888888877775
No 73
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=87.55 E-value=11 Score=48.86 Aligned_cols=128 Identities=18% Similarity=0.285 Sum_probs=76.6
Q ss_pred cchhhhhhhhhhccccc----CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhccc---CCChhHHHHHHHHhH
Q 000609 256 SPQILSGVVPYLTGELL----TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLT---DRIVAVRMSVLEHVK 328 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~----se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~---D~s~~VR~~~v~~~~ 328 (1393)
.+.+..-+++.|..+|. ..+...++.+.+.||.| +.+ .+...++.-.. +.+..||++++.+..
T Consensus 480 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~-g~~---------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr 549 (618)
T PF01347_consen 480 SRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL-GHP---------ESIPVLLPYIEGKEEVPHFIRVAAIQALR 549 (618)
T ss_dssp -SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-T-G---------GGHHHHHTTSTTSS-S-HHHHHHHHHTTT
T ss_pred chhhHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc-CCc---------hhhHHHHhHhhhccccchHHHHHHHHHHH
Confidence 45555566667766666 56789999999999987 322 23333433333 559999999999988
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhCCchh--HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhh-ccCChhHHHHHHHHH
Q 000609 329 SCLLTDPSRADAPQILTALCDRLLDFDE--NVRKQVVAVICDVACHALNSIPVETVKLVAERL-RDKSVLVKRYTMERL 404 (1393)
Q Consensus 329 ~iL~~~p~~~~~~ei~~~L~~rL~D~De--kVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~-rDKK~~VR~eAm~~L 404 (1393)
.+....| ..+.+.|..-+.|..| .||.+|+-++-. ..-+...|..++..+ .|+...|+......|
T Consensus 550 ~~~~~~~-----~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~------~~P~~~~l~~i~~~l~~E~~~QV~sfv~S~L 617 (618)
T PF01347_consen 550 RLAKHCP-----EKVREILLPIFMNTTEDPEVRIAAYLILMR------CNPSPSVLQRIAQSLWNEPSNQVASFVYSHL 617 (618)
T ss_dssp TGGGT-H-----HHHHHHHHHHHH-TTS-HHHHHHHHHHHHH------T---HHHHHHHHHHHTT-S-HHHHHHHHHHH
T ss_pred HHhhcCc-----HHHHHHHHHHhcCCCCChhHHHHHHHHHHh------cCCCHHHHHHHHHHHhhCchHHHHHHHHHhc
Confidence 7644333 2455666666665544 499997655542 123556778888877 778788887665543
No 74
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=86.83 E-value=7.2 Score=51.69 Aligned_cols=151 Identities=16% Similarity=0.272 Sum_probs=109.4
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCCh----------------------------------h-----
Q 000609 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSAN----------------------------------N----- 298 (1393)
Q Consensus 258 ~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~----------------------------------~----- 298 (1393)
+++..+.|.++.++.+.+=..|..|++-+...+..++... +
T Consensus 249 di~~ki~~~l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~ 328 (815)
T KOG1820|consen 249 DILSKITKNLETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRP 328 (815)
T ss_pred hhhhhcChHHHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcch
Confidence 6788899999999999999999999999999998765110 1
Q ss_pred --hhc-HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh-hhc
Q 000609 299 --EQF-HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HAL 374 (1393)
Q Consensus 299 --~~~-~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~-~~l 374 (1393)
..| ...+..+|.|+.|+-+.+|-..+.++-.++.+.+ ...+.+++..-+.+....+|...-..+...-. ...
T Consensus 329 ~~~~~~~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~----l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~ 404 (815)
T KOG1820|consen 329 LFRKYAKNVFPSLLDRLKEKKSELRDALLKALDAILNSTP----LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGP 404 (815)
T ss_pred hhHHHHHhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc----HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCC
Confidence 111 4567788888888888888888888888777554 24667777777778888888774443332111 111
Q ss_pred CCCCH----HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 375 NSIPV----ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 375 ~~v~~----e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
..++. .+...+.-.+.|+...||..|.+.++.+++.+-
T Consensus 405 ~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~G 446 (815)
T KOG1820|consen 405 KTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHG 446 (815)
T ss_pred cCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhh
Confidence 22333 345577788889999999999999999998753
No 75
>KOG2011 consensus Sister chromatid cohesion complex Cohesin, subunit STAG/IRR1/SCC3 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.61 E-value=13 Score=50.07 Aligned_cols=164 Identities=16% Similarity=0.171 Sum_probs=113.1
Q ss_pred HHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHH
Q 000609 204 TARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAV 283 (1393)
Q Consensus 204 ~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At 283 (1393)
.....-....+...|.++..+..+|.++... +++ .-++++|...+
T Consensus 264 e~Ll~~r~etqe~~d~i~~mi~~if~sVFVH---------RYR--------------------------DV~~~IRaiCi 308 (1048)
T KOG2011|consen 264 ESLLMLRKETQEQQDEIESMINDIFDSVFVH---------RYR--------------------------DVDPDIRAICI 308 (1048)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhheeee---------ecc--------------------------cCchHHHHHHH
Confidence 5556666777777777777877777776542 122 23567899999
Q ss_pred HHHHHhhcCCCCChhhhcHHHHH--HHHhc----ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHH-----hC
Q 000609 284 GLVGDLFAVPGSANNEQFHSVFS--EFLKR----LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDR-----LL 352 (1393)
Q Consensus 284 ~llG~mfs~~~~~~~~~~~~~w~--~fL~R----~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~r-----L~ 352 (1393)
+-||-- +..||+.|- .||+= .+|+..+||..+++.+..+..+.....-.....+-+.+| ..
T Consensus 309 qeLgiW--------i~~yP~~Fl~dsYLKYiGWtLsDk~~~VRl~~lkaL~~L~e~~~~~~~L~lFtsRFK~RIVeMadr 380 (1048)
T KOG2011|consen 309 QELGIW--------IKSYPEIFLSDSYLKYIGWTLSDKNGTVRLRCLKALIKLYEKDEDKDKLELFTSRFKDRIVEMADR 380 (1048)
T ss_pred HHHHHH--------HHhccHHHhcchHHHHhcceeecCccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhh
Confidence 999954 456666665 44443 589999999999999999777632211223445555555 46
Q ss_pred CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHH-HHHHhh
Q 000609 353 DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLAD-IFRGCC 412 (1393)
Q Consensus 353 D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~-lY~~~~ 412 (1393)
|.+.-||.......- .......++.+-+..|.+.|=|-++.||+.|+..|-. ++..+.
T Consensus 381 d~~~~Vrav~L~~~~--~~~~~g~L~d~di~~Vy~Li~d~~r~~~~aa~~fl~~k~~~~~a 439 (1048)
T KOG2011|consen 381 DRNVSVRAVGLVLCL--LLSSSGLLSDKDILIVYSLIYDSNRRVAVAAGEFLYKKLFERVA 439 (1048)
T ss_pred hcchhHHHHHHHHHH--HHhcccccChhHHHHHHHHHhccCcchHHHHHHHHHHHhhcccc
Confidence 777777766443322 3455677888888899999999999999999988755 444443
No 76
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=85.24 E-value=7.8 Score=47.60 Aligned_cols=173 Identities=13% Similarity=0.119 Sum_probs=117.3
Q ss_pred HHHh-hcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHH
Q 000609 251 DVYR-CSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKS 329 (1393)
Q Consensus 251 eL~~-~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~ 329 (1393)
.+|. +--++|..|+--|-. +++...|.+|.+.|++|+..+...|...---+-..+|.-..|-...|=....+.|-.
T Consensus 321 svWeq~f~~iL~~l~EvL~d---~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~ 397 (516)
T KOG2956|consen 321 SVWEQHFAEILLLLLEVLSD---SEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT 397 (516)
T ss_pred hHHHHHHHHHHHHHHHHHcc---chhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence 3564 344555555543322 478999999999999999988766666666677899999999999998888999888
Q ss_pred HHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhh----hhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHH
Q 000609 330 CLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA----CHALNSIPVETVKLVAERLRDKSVLVKRYTMERLA 405 (1393)
Q Consensus 330 iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la----~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La 405 (1393)
++.+|.-. .-+.-++.+++-.||..=.++++....+. ...|..+=.++.=.+.+=.---...||+.|+=+|-
T Consensus 398 ~las~~P~----~~I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaVfCLV 473 (516)
T KOG2956|consen 398 TLASHLPL----QCIVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAVFCLV 473 (516)
T ss_pred HHHhhCch----hHHHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHHHhHH
Confidence 88877421 34556667777789998888887665442 23333333333334444445556789999999999
Q ss_pred HHHHHhhhhccCCCcchhccccchHHHhhh
Q 000609 406 DIFRGCCLRNFNGSINQNEFEWIPGKILRC 435 (1393)
Q Consensus 406 ~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~ 435 (1393)
.+|+..-- ..-...+...++.-+++
T Consensus 474 amv~~vG~-----~~mePhL~~Lt~sk~~L 498 (516)
T KOG2956|consen 474 AMVNRVGM-----EEMEPHLEQLTSSKLNL 498 (516)
T ss_pred HHHHHHhH-----HhhhhHhhhccHHHHHH
Confidence 99997521 11123455555555444
No 77
>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=84.97 E-value=23 Score=45.88 Aligned_cols=256 Identities=16% Similarity=0.207 Sum_probs=138.2
Q ss_pred hhcCCCcchHHHHHHHHHHHHhhc---CCCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHH-------------HHH
Q 000609 64 LLKHQDKDVKLLVATCICEITRIT---APEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRV-------------VIL 127 (1393)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~---APdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~-------------~lL 127 (1393)
=|+|...=||-..-||+-.|++.+ -|||| .-|..++.+.. ||+ .-...| |++
T Consensus 142 cleHrhsYVRrNAilaifsIyk~~~~L~pDap------eLi~~fL~~e~----Dps--CkRNAFi~L~~~D~ErAl~Yl~ 209 (948)
T KOG1058|consen 142 CLEHRHSYVRRNAILAIFSIYKNFEHLIPDAP------ELIESFLLTEQ----DPS--CKRNAFLMLFTTDPERALNYLL 209 (948)
T ss_pred HHhCcchhhhhhhheeehhHHhhhhhhcCChH------HHHHHHHHhcc----Cch--hHHHHHHHHHhcCHHHHHHHHH
Confidence 368999999999999999999995 48888 34555555432 221 112223 333
Q ss_pred HHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHH
Q 000609 128 ETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1393)
Q Consensus 128 e~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~ 207 (1393)
+.+..|.++.-. -+-+|.++.+. ++-..|..=-.++.-|+..+-.+++.| +++
T Consensus 210 ~~idqi~~~~~~----LqlViVE~Irk----v~~~~p~~~~~~i~~i~~lL~stssaV-------~fE------------ 262 (948)
T KOG1058|consen 210 SNIDQIPSFNDS----LQLVIVELIRK----VCLANPAEKARYIRCIYNLLSSTSSAV-------IFE------------ 262 (948)
T ss_pred hhHhhccCccHH----HHHHHHHHHHH----HHhcCHHHhhHHHHHHHHHHhcCCchh-------hhh------------
Confidence 333333322110 01233333222 333344443444444444444443332 221
Q ss_pred HHHHHHH--HhhhhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhc----chhhhhhhhhhcccccCCChHHHHH
Q 000609 208 LAMNVIE--QCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCS----PQILSGVVPYLTGELLTDQLDTRLK 281 (1393)
Q Consensus 208 lA~~vi~--~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~----P~lL~~ViP~Le~eL~se~~~~Rl~ 281 (1393)
-|..|+. .....+.++...|+.=+....+ -+..+-.-+.|+++.... -+++..|++. |.+.|.++|.+
T Consensus 263 aa~tlv~lS~~p~alk~Aa~~~i~l~~kesd--nnvklIvldrl~~l~~~~~~il~~l~mDvLrv----Lss~dldvr~K 336 (948)
T KOG1058|consen 263 AAGTLVTLSNDPTALKAAASTYIDLLVKESD--NNVKLIVLDRLSELKALHEKILQGLIMDVLRV----LSSPDLDVRSK 336 (948)
T ss_pred hcceEEEccCCHHHHHHHHHHHHHHHHhccC--cchhhhhHHHHHHHhhhhHHHHHHHHHHHHHH----cCcccccHHHH
Confidence 1111111 1112233333344322211110 001111223444444333 3444455555 67899999999
Q ss_pred HHHHHHHhhcCCCCChhhhcHHHHHHHHh---cccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHH
Q 000609 282 AVGLVGDLFAVPGSANNEQFHSVFSEFLK---RLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENV 358 (1393)
Q Consensus 282 At~llG~mfs~~~~~~~~~~~~~w~~fL~---R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekV 358 (1393)
+..+.-++.+..... +--.-+=.++.+ --+|..-.-|...++....|-.+-|+. +..++..|.+-+-|+.+.-
T Consensus 337 tldi~ldLvssrNve--div~~Lkke~~kT~~~e~d~~~~yRqlLiktih~cav~Fp~~--aatvV~~ll~fisD~N~~a 412 (948)
T KOG1058|consen 337 TLDIALDLVSSRNVE--DIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHACAVKFPEV--AATVVSLLLDFISDSNEAA 412 (948)
T ss_pred HHHHHHhhhhhccHH--HHHHHHHHHHHhccccccccchHHHHHHHHHHHHHhhcChHH--HHHHHHHHHHHhccCCHHH
Confidence 999999999876421 100001111111 124566677999999999999888864 6789999999999999998
Q ss_pred HHHHHHHHHH
Q 000609 359 RKQVVAVICD 368 (1393)
Q Consensus 359 R~aaV~ai~~ 368 (1393)
=..++.-|.+
T Consensus 413 as~vl~FvrE 422 (948)
T KOG1058|consen 413 ASDVLMFVRE 422 (948)
T ss_pred HHHHHHHHHH
Confidence 7777766665
No 78
>TIGR02270 conserved hypothetical protein. Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.
Probab=84.59 E-value=11 Score=46.56 Aligned_cols=135 Identities=15% Similarity=0.018 Sum_probs=90.9
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHH
Q 000609 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSV 323 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~ 323 (1393)
.+| |--|-..-|..+...++.|.. .++..+|..|+..++ +. ..+..+...+....|.++.||.++
T Consensus 42 ~Ah--LdgL~~~G~~a~~~L~~aL~~---d~~~ev~~~aa~al~---~~-------~~~~~~~~L~~~L~d~~~~vr~aa 106 (410)
T TIGR02270 42 LAH--VDGLVLAGKAATELLVSALAE---ADEPGRVACAALALL---AQ-------EDALDLRSVLAVLQAGPEGLCAGI 106 (410)
T ss_pred HHH--HHHHHHhhHhHHHHHHHHHhh---CCChhHHHHHHHHHh---cc-------CChHHHHHHHHHhcCCCHHHHHHH
Confidence 455 555555556665555555532 466777777665553 11 112358888999999999999999
Q ss_pred HHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHH
Q 000609 324 LEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMER 403 (1393)
Q Consensus 324 v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~ 403 (1393)
++..+.|= -.+....|...|.|.|..||.+++.+... ... -+.+.+ ..-+.|..+.||..|+..
T Consensus 107 a~ALg~i~--------~~~a~~~L~~~L~~~~p~vR~aal~al~~---r~~--~~~~~L---~~~L~d~d~~Vra~A~ra 170 (410)
T TIGR02270 107 QAALGWLG--------GRQAEPWLEPLLAASEPPGRAIGLAALGA---HRH--DPGPAL---EAALTHEDALVRAAALRA 170 (410)
T ss_pred HHHHhcCC--------chHHHHHHHHHhcCCChHHHHHHHHHHHh---hcc--ChHHHH---HHHhcCCCHHHHHHHHHH
Confidence 99977421 13567788888899999999988855543 221 134444 344569999999999999
Q ss_pred HHHHHH
Q 000609 404 LADIFR 409 (1393)
Q Consensus 404 La~lY~ 409 (1393)
||.+=.
T Consensus 171 LG~l~~ 176 (410)
T TIGR02270 171 LGELPR 176 (410)
T ss_pred HHhhcc
Confidence 998643
No 79
>PF12231 Rif1_N: Rap1-interacting factor 1 N terminal; InterPro: IPR022031 This domain family is found in eukaryotes, and is typically between 135 and 146 amino acids in length. Rif1 is a protein which interacts with Rap1 to regulate telomere length. Interaction with telomeres limits their length. The N-terminal region contains many HEAT- and ARMADILLO- type repeats. These are helical folds which form extended curved proteins or RNA interface surfaces.
Probab=82.31 E-value=1.3e+02 Score=36.75 Aligned_cols=321 Identities=13% Similarity=0.089 Sum_probs=176.6
Q ss_pred cCCCcchHHHHHHHHHHHHhhcCCCCCCCh---hHHHHHHHHHHHhccC---CCCC-CCCChhhHHHHHHHHHhhhhhhh
Q 000609 66 KHQDKDVKLLVATCICEITRITAPEAPYSD---DVLKDIFQLIVGTFSG---LKDT-GGPSFGRRVVILETLAKYRSCVV 138 (1393)
Q Consensus 66 ~HkD~~Vr~~vAcCLadIlRI~APdaPytd---~~LkdIF~l~v~qf~~---L~d~-~~p~f~~~~~lLe~La~vks~vl 138 (1393)
...|++=|.=+-..|+.+||.|--. |..+ +.+.-+.+++-+=+.. =++| +...+.|..-+|-.+-.--.++-
T Consensus 3 a~~~~~~r~daY~~l~~~l~~~~~~-~~~~~l~~k~~~l~~~i~rDi~~~~~~~~p~~~~L~~qALkll~~~l~~~~i~~ 81 (372)
T PF12231_consen 3 AGSDRSSRLDAYMTLNNALKAYDNL-PDRQALQDKMSLLLQFIQRDISSSSSKGDPFDSRLVIQALKLLGFFLYHPEIVS 81 (372)
T ss_pred CcCCcHHHHHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHhcccCCCCCcchHHHHHHHHHHHHHHccHHHHh
Confidence 3455555555555689999988422 2222 2344444444442221 1233 34456666666666654444433
Q ss_pred cccCCchHHHHHHHHHHHHhh-cCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhc--C--CCcH----HHHHHH
Q 000609 139 MLDLECDELVNEMYSTFFAVA-SDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALG--R--NKND----TARRLA 209 (1393)
Q Consensus 139 ~~DL~~~~Li~~lF~~ff~~v-~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~--~--~~~~----~a~~lA 209 (1393)
.++ ++...-+..+..... .+..++.+...-..+|..-==....++.+....|+..+. . -.+. .+-.+=
T Consensus 82 ~l~---~d~~~~~i~~~i~~l~~~~~~K~i~~~~l~~ls~Q~f~~~~~~~~~~~~l~~~l~~i~~~~~s~si~~erL~i~ 158 (372)
T PF12231_consen 82 TLS---DDFASFIIDHSIESLQNPNSPKSICTHYLWCLSDQKFSPKIMTSDRVERLLAALHNIKNRFPSKSIISERLNIY 158 (372)
T ss_pred hCC---hHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHcCCCCCcccchhhHHHHHHHHHHhhccCCchhHHHHHHHHH
Confidence 333 233334444444443 455677777666655554111122345555555554331 1 1111 667788
Q ss_pred HHHHHHhhhhhhHHHHHHHHHhhcCC-CCCCCCchhHHHHHHHHHhhc-ch-hhhh-hhhhhcccccCCChHHHHHHHHH
Q 000609 210 MNVIEQCAGKLEAGIKQFLVSSMSGD-SRPGHSHIDYHEVIYDVYRCS-PQ-ILSG-VVPYLTGELLTDQLDTRLKAVGL 285 (1393)
Q Consensus 210 ~~vi~~~~dkl~~~i~q~f~~~l~~d-~~~~~~~~~~h~Li~eL~~~~-P~-lL~~-ViP~Le~eL~se~~~~Rl~At~l 285 (1393)
++++.++.+.|...+..+|-.++.+- +.......++..+..++-.+. |+ .+.. +...+...+..+ .+-..-++.
T Consensus 159 ~~ll~q~p~~M~~~~~~W~~~l~~~l~~~~k~ir~~a~~l~~~~~~~l~~~~~~s~~~~~~~~~~~~~~--~~~~~~~~~ 236 (372)
T PF12231_consen 159 KRLLSQFPQQMIKHADIWFPILFPDLLSSAKDIRTKAISLLLEAKKCLGPNKELSKSVLEDLQRSLENG--KLIQLYCER 236 (372)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHhChhHHHHHHHHHHhccccccc--cHHHHHHHH
Confidence 89999999999999988876654321 111112223566665554443 22 2222 333334444433 777888888
Q ss_pred HHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHH
Q 000609 286 VGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAV 365 (1393)
Q Consensus 286 lG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~a 365 (1393)
+.+|+.+++. ...=|++|..+..=..+.- +. ..+...+.+.-.+.++..+|..||.+|..+
T Consensus 237 L~~mi~~~~~--~~~a~~iW~~~i~LL~~~~--------------~~---~w~~~n~wL~v~e~cFn~~d~~~k~~A~~a 297 (372)
T PF12231_consen 237 LKEMIKSKDE--YKLAMQIWSVVILLLGSSR--------------LD---SWEHLNEWLKVPEKCFNSSDPQVKIQAFKA 297 (372)
T ss_pred HHHHHhCcCC--cchHHHHHHHHHHHhCCch--------------hh---ccHhHhHHHHHHHHHhcCCCHHHHHHHHHH
Confidence 9999998532 2334678987765442211 11 112345788888899999999999999988
Q ss_pred HHHhhhhh-cCC-CCHHHHH--------HHHHhhccCCh-hHHHHHHHHHHHHHHHh
Q 000609 366 ICDVACHA-LNS-IPVETVK--------LVAERLRDKSV-LVKRYTMERLADIFRGC 411 (1393)
Q Consensus 366 i~~la~~~-l~~-v~~e~L~--------~l~eR~rDKK~-~VR~eAm~~La~lY~~~ 411 (1393)
=.-+.+.. .+. .....++ .+..+.-+|.. .||..++..++.++-..
T Consensus 298 W~~liy~~~~~~~~~~k~l~lL~~Pl~~~l~~~~~~~~~~~~~~~ll~~l~~lly~~ 354 (372)
T PF12231_consen 298 WRRLIYASNPNELTSPKRLKLLCQPLSSQLRREKSSKTKEEVWWYLLYSLCNLLYYA 354 (372)
T ss_pred HHHHHHHhcCCccccHHHHHHHHHHHHHHhCccccccccHHHHHHHHHHHhchHHHH
Confidence 77776622 111 1223332 33333333333 89999999999876443
No 80
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=82.27 E-value=9.9 Score=45.04 Aligned_cols=136 Identities=21% Similarity=0.293 Sum_probs=94.2
Q ss_pred HHHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCC----------
Q 000609 248 VIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRI---------- 316 (1393)
Q Consensus 248 Li~eL~~~-~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s---------- 316 (1393)
.++.|-.. .|..+-..++.|+. .++..+|..|...||.+-.... +...+.-..|..
T Consensus 94 a~~aLg~~~~~~a~~~li~~l~~---d~~~~vR~~aa~aL~~~~~~~a----------~~~l~~~l~~~~~~~a~~~~~~ 160 (335)
T COG1413 94 AADALGELGDPEAVPPLVELLEN---DENEGVRAAAARALGKLGDERA----------LDPLLEALQDEDSGSAAAALDA 160 (335)
T ss_pred HHHHHHccCChhHHHHHHHHHHc---CCcHhHHHHHHHHHHhcCchhh----------hHHHHHHhccchhhhhhhhccc
Confidence 33344444 25555555555554 6899999999999998876542 222222222222
Q ss_pred --hhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCCh
Q 000609 317 --VAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSV 394 (1393)
Q Consensus 317 --~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~ 394 (1393)
-.+|...++.... ..+ .+....+...+.|.+..||.++..+++.+.... ..+...+...+.|-.+
T Consensus 161 ~~~~~r~~a~~~l~~----~~~----~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~-----~~~~~~l~~~~~~~~~ 227 (335)
T COG1413 161 ALLDVRAAAAEALGE----LGD----PEAIPLLIELLEDEDADVRRAAASALGQLGSEN-----VEAADLLVKALSDESL 227 (335)
T ss_pred hHHHHHHHHHHHHHH----cCC----hhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch-----hhHHHHHHHHhcCCCH
Confidence 1567777666543 111 256778889999999999999999999877665 4455677889999999
Q ss_pred hHHHHHHHHHHHHHH
Q 000609 395 LVKRYTMERLADIFR 409 (1393)
Q Consensus 395 ~VR~eAm~~La~lY~ 409 (1393)
.||..++..|+.+=.
T Consensus 228 ~vr~~~~~~l~~~~~ 242 (335)
T COG1413 228 EVRKAALLALGEIGD 242 (335)
T ss_pred HHHHHHHHHhcccCc
Confidence 999999999987544
No 81
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=81.47 E-value=62 Score=42.77 Aligned_cols=177 Identities=20% Similarity=0.198 Sum_probs=99.8
Q ss_pred cccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhh-cccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchH
Q 000609 644 GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLA-ATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSL 722 (1393)
Q Consensus 644 k~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~-~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~~~~~~ 722 (1393)
++.+.-|+++|..++....-.++..|.+.+-+ .++-. -....+.+.|.++-..++...-.-|.++|..++-+.+....
T Consensus 289 ~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~-~ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~ 367 (708)
T PF05804_consen 289 KGIVSLLVKCLDRENEELLILAVTFLKKLSIF-KENKDEMAESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQ 367 (708)
T ss_pred cCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHH
Confidence 55677899999877665555566667666532 22211 12446788899999888888888999999988876643210
Q ss_pred ---HHHHHHHHHhhhhcCCCchHHHHHHHHHhhc--ccccccchHHHHHHHHHhhhccccccCCCCCCCC-------CCC
Q 000609 723 ---SVLYKRLVDMLEEKTHLPAVLQSLGCIAQTA--MPVFETRESEIEEFIKSKILRCSNKIRNDTKACW-------DDR 790 (1393)
Q Consensus 723 ---~~L~~~L~~~L~~~~~l~t~L~sL~~Ia~~a--p~vfe~~~~eI~~fiik~IL~~~~~~~~~~~~~W-------~d~ 790 (1393)
.-++..++..|.........+..|..|+... ...|.. ++.+.++++-++..+....+ .+.-| ...
T Consensus 368 mV~~GlIPkLv~LL~d~~~~~val~iLy~LS~dd~~r~~f~~--TdcIp~L~~~Ll~~~~~~v~-~eliaL~iNLa~~~r 444 (708)
T PF05804_consen 368 MVSLGLIPKLVELLKDPNFREVALKILYNLSMDDEARSMFAY--TDCIPQLMQMLLENSEEEVQ-LELIALLINLALNKR 444 (708)
T ss_pred HHHCCCcHHHHHHhCCCchHHHHHHHHHHhccCHhhHHHHhh--cchHHHHHHHHHhCCCcccc-HHHHHHHHHHhcCHH
Confidence 1133445544553322233455666666542 344532 24567777776654332111 11111 001
Q ss_pred hhhHHHHHHHHHHHHHhhcCCCccccccchHHHHHHHHHhh
Q 000609 791 SELCLLKIYGIKTLVKSYLPVKDAHIRPGIDDLLGILKSML 831 (1393)
Q Consensus 791 s~~~~aKi~aLK~lvn~ll~~~~~~~~~~i~~ll~lL~~il 831 (1393)
.-...+.--+|+.|+.+.....+ ..+++++++|-
T Consensus 445 naqlm~~g~gL~~L~~ra~~~~D-------~lLlKlIRNiS 478 (708)
T PF05804_consen 445 NAQLMCEGNGLQSLMKRALKTRD-------PLLLKLIRNIS 478 (708)
T ss_pred HHHHHHhcCcHHHHHHHHHhccc-------HHHHHHHHHHH
Confidence 11111234567777777655443 45788988874
No 82
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=80.52 E-value=78 Score=37.89 Aligned_cols=204 Identities=13% Similarity=0.112 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-ccccHHHHHHHHHhhcCCCcH--HHH-HHHHHHH--------H
Q 000609 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-EDIQEDLLVILLSALGRNKND--TAR-RLAMNVI--------E 214 (1393)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Es-e~vp~~vLd~IL~~l~~~~~~--~a~-~lA~~vi--------~ 214 (1393)
+-..+-+.+..++..+..+.....|.+.|..-+.-. ..+|.++++.+-.-+...+.. -+| .....++ .
T Consensus 19 ~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR~~w~~~~~~~~~~~~~~~~~ 98 (339)
T PF12074_consen 19 LSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVRRAWLLCLGEALWESPNSDSL 98 (339)
T ss_pred hHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHhhccCchHH
Confidence 444445555555556666666667777776655554 789999999998877655442 222 1122222 2
Q ss_pred HhhhhhhHHHHHHHHHhhcCCCCC-CCCch-hHHHHHH--------------HHH----hhcchhhhhhhhhhcccccCC
Q 000609 215 QCAGKLEAGIKQFLVSSMSGDSRP-GHSHI-DYHEVIY--------------DVY----RCSPQILSGVVPYLTGELLTD 274 (1393)
Q Consensus 215 ~~~dkl~~~i~q~f~~~l~~d~~~-~~~~~-~~h~Li~--------------eL~----~~~P~lL~~ViP~Le~eL~se 274 (1393)
.....+-+.+-+++.++....... ..... -++-++. ..| .--|.+|.+ |-+...|.++
T Consensus 99 ~~~~~~~~~L~~~~~~~~~~p~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~~kps~ll~--~kvyskl~~~ 176 (339)
T PF12074_consen 99 KFAEPFLPKLLQSLKEASANPLQSAQNGELVGAYVLLALSSWKLDKIDSKNISFWSLALDPKPSFLLS--EKVYSKLASE 176 (339)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCCccccccHHHHHHHHHhccccchhhhhhhhhhhhhccCCCcchhcC--HHHHhccCCH
Confidence 223334555556666655443111 11111 2222222 011 112333333 3444443322
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhh-cHHHHHHHHhcccCC--ChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHh
Q 000609 275 QLDTRLKAVGLVGDLFAVPGSANNEQ-FHSVFSEFLKRLTDR--IVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRL 351 (1393)
Q Consensus 275 ~~~~Rl~At~llG~mfs~~~~~~~~~-~~~~w~~fL~R~~D~--s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL 351 (1393)
++ =.-.++.+-.++.......... .....++|+-=.... ++.||...++..+.++..+|.. ....|+.++...|
T Consensus 177 ~d--~~w~~~al~~~~~~~~~~~~~~~~~~~~~a~i~ll~s~~~~~~vR~~A~~~l~~l~~~~~~~-l~~~li~~l~~~l 253 (339)
T PF12074_consen 177 ED--LCWLLRALEALLSDHPSELSSDKSSAWAQAFIYLLCSSNVSWKVRRAALSALKKLYASNPEL-LSKSLISGLWKWL 253 (339)
T ss_pred hH--HHHHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHH
Confidence 22 2345555555555443222111 234445666666666 7778888888887777777642 3345666666665
Q ss_pred CCch
Q 000609 352 LDFD 355 (1393)
Q Consensus 352 ~D~D 355 (1393)
.+.+
T Consensus 254 ~~~~ 257 (339)
T PF12074_consen 254 SSSE 257 (339)
T ss_pred Hhcc
Confidence 5433
No 83
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=80.46 E-value=8.2 Score=50.70 Aligned_cols=149 Identities=17% Similarity=0.193 Sum_probs=116.5
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC--
Q 000609 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-- 337 (1393)
Q Consensus 261 ~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-- 337 (1393)
..+.|-|.....+..-..|-.=...|...++.- ..-+.-..|.++--.|.-..=.++.||+.-.+..+..+..++..
T Consensus 866 ~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t 945 (1030)
T KOG1967|consen 866 CDIVPILVSKFETAPGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQT 945 (1030)
T ss_pred HhhHHHHHHHhccCCccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccch
Confidence 346666666666777777777888888888743 23345678899999999999999999999999999988877642
Q ss_pred CChHHHHHHHHHHhCCch---hHHHHHHHHHHHHhhhhh----cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHH
Q 000609 338 ADAPQILTALCDRLLDFD---ENVRKQVVAVICDVACHA----LNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1393)
Q Consensus 338 ~~~~ei~~~L~~rL~D~D---ekVR~aaV~ai~~la~~~----l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~ 409 (1393)
.....+++.+..--.|.| --||..|.+.+..+.... +...-.++++.+..=+-|||..||++|+.+=.+-|-
T Consensus 946 ~~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR~~W~~ 1024 (1030)
T KOG1967|consen 946 EHLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTRQNWYM 1024 (1030)
T ss_pred HHHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHhhhhhh
Confidence 334577888888778888 679999999999887633 334566889999999999999999999987655543
No 84
>COG1413 FOG: HEAT repeat [Energy production and conversion]
Probab=80.05 E-value=13 Score=44.02 Aligned_cols=90 Identities=21% Similarity=0.204 Sum_probs=64.1
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHH
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQ 342 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~e 342 (1393)
.++.+..-|.+++..+|..|+..+|.+=+. .....+.....|.++.||-.++...+. -.. ++
T Consensus 44 ~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~----------~av~~l~~~l~d~~~~vr~~a~~aLg~----~~~----~~ 105 (335)
T COG1413 44 AADELLKLLEDEDLLVRLSAAVALGELGSE----------EAVPLLRELLSDEDPRVRDAAADALGE----LGD----PE 105 (335)
T ss_pred hHHHHHHHHcCCCHHHHHHHHHHHhhhchH----------HHHHHHHHHhcCCCHHHHHHHHHHHHc----cCC----hh
Confidence 456666667777999999999997754332 356677788889999999999985543 111 23
Q ss_pred HHHHHHHHhC-CchhHHHHHHHHHHHHhh
Q 000609 343 ILTALCDRLL-DFDENVRKQVVAVICDVA 370 (1393)
Q Consensus 343 i~~~L~~rL~-D~DekVR~aaV~ai~~la 370 (1393)
.+..|...|. |.+..||..+..++..+.
T Consensus 106 a~~~li~~l~~d~~~~vR~~aa~aL~~~~ 134 (335)
T COG1413 106 AVPPLVELLENDENEGVRAAAARALGKLG 134 (335)
T ss_pred HHHHHHHHHHcCCcHhHHHHHHHHHHhcC
Confidence 4445555555 899999999888887653
No 85
>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=79.94 E-value=61 Score=42.45 Aligned_cols=221 Identities=15% Similarity=0.186 Sum_probs=133.3
Q ss_pred HHHHHHHHHHHHhhhhhhH---HHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHH
Q 000609 204 TARRLAMNVIEQCAGKLEA---GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1393)
Q Consensus 204 ~a~~lA~~vi~~~~dkl~~---~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl 280 (1393)
-|+-+-.++...+.+.-+. ++..|+.+.+... ...-..++-..|..+..+.|..++.++..|.--|.+..+.+|-
T Consensus 223 ~A~~~lir~~~~~l~~~~~~~s~~~~fl~s~l~~K--~emV~~EaArai~~l~~~~~r~l~pavs~Lq~flssp~~~lRf 300 (865)
T KOG1078|consen 223 LAVCMLIRIASELLKENQQADSPLFPFLESCLRHK--SEMVIYEAARAIVSLPNTNSRELAPAVSVLQLFLSSPKVALRF 300 (865)
T ss_pred hHHHHHHHHHHHHhhhcccchhhHHHHHHHHHhch--hHHHHHHHHHHHhhccccCHhhcchHHHHHHHHhcCcHHHHHH
Confidence 4555555555555555455 3334444544321 1112234455677777777888888888877778888888888
Q ss_pred HHHHHHHHhhcCCCCC----------------------------------------------------------------
Q 000609 281 KAVGLVGDLFAVPGSA---------------------------------------------------------------- 296 (1393)
Q Consensus 281 ~At~llG~mfs~~~~~---------------------------------------------------------------- 296 (1393)
.|+++|-++-..+...
T Consensus 301 aAvRtLnkvAm~~P~~v~~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~s 380 (865)
T KOG1078|consen 301 AAVRTLNKVAMKHPQAVTVCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRS 380 (865)
T ss_pred HHHHHHHHHHHhCCccccccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHH
Confidence 8888887776543110
Q ss_pred hhhhcHHHHH---HHHhcc--cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh
Q 000609 297 NNEQFHSVFS---EFLKRL--TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1393)
Q Consensus 297 ~~~~~~~~w~---~fL~R~--~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1393)
+-..||.-|. .||++. .+-..+--..+|+.+..|+..+|+..+ -.+..||+.+-|-+-. .-++..+.-+..
T Consensus 381 Lc~~fp~k~~~~m~FL~~~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe--~~L~~LCefIEDce~~--~i~~rILhlLG~ 456 (865)
T KOG1078|consen 381 LCLKFPRKHTVMMNFLSNMLREEGGFEFKRAIVDAIIDIIEENPDSKE--RGLEHLCEFIEDCEFT--QIAVRILHLLGK 456 (865)
T ss_pred HHhhccHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHhCcchhh--HHHHHHHHHHHhccch--HHHHHHHHHHhc
Confidence 1224455444 566553 233444555677777777776765322 3445566555554332 223333444444
Q ss_pred hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccC
Q 000609 372 HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKD 440 (1393)
Q Consensus 372 ~~l~-~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d 440 (1393)
..+. ..|..-++.+..|+-==+..||..|...|+++=.. .......||+.+-+|.++.|
T Consensus 457 EgP~a~~Pskyir~iyNRviLEn~ivRaaAv~alaKfg~~----------~~~l~~sI~vllkRc~~D~D 516 (865)
T KOG1078|consen 457 EGPKAPNPSKYIRFIYNRVILENAIVRAAAVSALAKFGAQ----------DVVLLPSILVLLKRCLNDSD 516 (865)
T ss_pred cCCCCCCcchhhHHHhhhhhhhhhhhHHHHHHHHHHHhcC----------CCCccccHHHHHHHHhcCch
Confidence 4443 34666788888998888889999999999987611 12345678999999987766
No 86
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=79.43 E-value=61 Score=41.66 Aligned_cols=144 Identities=13% Similarity=0.071 Sum_probs=91.1
Q ss_pred hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-------ChhhhcHHHHHHHHhcc-cCCChhHHHHHHH
Q 000609 254 RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-------ANNEQFHSVFSEFLKRL-TDRIVAVRMSVLE 325 (1393)
Q Consensus 254 ~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~-------~~~~~~~~~w~~fL~R~-~D~s~~VR~~~v~ 325 (1393)
+-.|++|..+.+.++..-...+..+|.-|+-.+|.|.-.--. ...+++-......|+.. .+.+...++.+++
T Consensus 389 ~Pt~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk 468 (574)
T smart00638 389 YPTEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEEIQLYLK 468 (574)
T ss_pred cCCHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchheeeHHH
Confidence 446777777777777776667889999999999988742111 11233334444444333 3456677888888
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHhC---CchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHH
Q 000609 326 HVKSCLLTDPSRADAPQILTALCDRLL---DFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTME 402 (1393)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~---D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~ 402 (1393)
++++ ..+| ..+..|...+. +....||.+||.++..++...++.+-.-++..+.. ++..+.||-.|..
T Consensus 469 aLGN--~g~~------~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~v~~~l~~i~~n--~~e~~EvRiaA~~ 538 (574)
T smart00638 469 ALGN--AGHP------SSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRKVQEVLLPIYLN--RAEPPEVRMAAVL 538 (574)
T ss_pred hhhc--cCCh------hHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchHHHHHHHHHHcC--CCCChHHHHHHHH
Confidence 8775 2223 34445554444 45678999999999988776655554444443322 2244789988887
Q ss_pred HHHHH
Q 000609 403 RLADI 407 (1393)
Q Consensus 403 ~La~l 407 (1393)
.|.+-
T Consensus 539 ~lm~t 543 (574)
T smart00638 539 VLMET 543 (574)
T ss_pred HHHhc
Confidence 77653
No 87
>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=77.82 E-value=2.5e+02 Score=37.31 Aligned_cols=160 Identities=14% Similarity=0.047 Sum_probs=114.3
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 324 (1393)
.|--+.+-.+-.|++-+--|-.+.--|...|..+|--|.+++..|= +..--|=...+--+-..|.+|-||....
T Consensus 91 VyvYLlrYAEeqpdLALLSIntfQk~L~DpN~LiRasALRvlSsIR------vp~IaPI~llAIk~~~~D~s~yVRk~AA 164 (968)
T KOG1060|consen 91 VYVYLLRYAEEQPDLALLSINTFQKALKDPNQLIRASALRVLSSIR------VPMIAPIMLLAIKKAVTDPSPYVRKTAA 164 (968)
T ss_pred HHHHHHHHhhcCCCceeeeHHHHHhhhcCCcHHHHHHHHHHHHhcc------hhhHHHHHHHHHHHHhcCCcHHHHHHHH
Confidence 3544555567789988888889999999999999999999887542 3333455666777888999999999999
Q ss_pred HHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHH
Q 000609 325 EHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERL 404 (1393)
Q Consensus 325 ~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~L 404 (1393)
-+++.+..-.|+. -.++++.+...|.|.+..|=-+||.++.++....++.+-... +.+..-+.|=.-==....|..|
T Consensus 165 ~AIpKLYsLd~e~--k~qL~e~I~~LLaD~splVvgsAv~AF~evCPerldLIHkny-rklC~ll~dvdeWgQvvlI~mL 241 (968)
T KOG1060|consen 165 HAIPKLYSLDPEQ--KDQLEEVIKKLLADRSPLVVGSAVMAFEEVCPERLDLIHKNY-RKLCRLLPDVDEWGQVVLINML 241 (968)
T ss_pred HhhHHHhcCChhh--HHHHHHHHHHHhcCCCCcchhHHHHHHHHhchhHHHHhhHHH-HHHHhhccchhhhhHHHHHHHH
Confidence 9999988766653 348999999999999999999999999988777776654432 1222222222211122455666
Q ss_pred HHHHHHhhh
Q 000609 405 ADIFRGCCL 413 (1393)
Q Consensus 405 a~lY~~~~~ 413 (1393)
.+.-+.+..
T Consensus 242 ~RYAR~~l~ 250 (968)
T KOG1060|consen 242 TRYARHQLP 250 (968)
T ss_pred HHHHHhcCC
Confidence 665454443
No 88
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=76.58 E-value=13 Score=50.41 Aligned_cols=137 Identities=20% Similarity=0.215 Sum_probs=100.9
Q ss_pred CchhHHHHHHHHH-----hhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCC
Q 000609 241 SHIDYHEVIYDVY-----RCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDR 315 (1393)
Q Consensus 241 ~~~~~h~Li~eL~-----~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~ 315 (1393)
..+.-.++...+| +..| +.+-.|-|-.-+.+....+|..|.+.+|.||.. ...+.+-.+.+.++-=..|.
T Consensus 792 ~~~~s~~vf~s~~~~m~s~l~~--~~~~l~~l~~~~~s~~~a~r~~~ar~i~~~~k~---~~~e~m~~v~~~~~~ll~~~ 866 (1549)
T KOG0392|consen 792 EFLSSFEVFNSLAPLMHSFLHP--LGSLLPRLFFFVRSIHIAVRYAAARCIGTMFKS---ATRETMATVINGFLPLLGDL 866 (1549)
T ss_pred chhhhHHHHHHHHHhhhhhhhh--hhhhhhHHHHhcccchHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHhhhccch
Confidence 3444556666666 3345 667788888889999999999999999999976 34566777778887777888
Q ss_pred ChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhh--------hcCCCCHHHH
Q 000609 316 IVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVICDVACH--------ALNSIPVETV 382 (1393)
Q Consensus 316 s~~VR~~~v~~~~~iL~~~p~~---~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~--------~l~~v~~e~L 382 (1393)
+--+|.+-...+-.+|..-..+ .-..-++.-|..|+-|.+|.||.+|-+++..+... .+..+|.+++
T Consensus 867 ~~~~~r~~a~e~~~~l~~~l~~~l~~~~~Llv~pllr~msd~~d~vR~aat~~fa~lip~~~le~g~~~p~gls~eLl 944 (1549)
T KOG0392|consen 867 DKFVRRQGADELIELLDAVLMVGLVPYNPLLVVPLLRRMSDQIDSVREAATKVFAKLIPLLPLEAGIPDPTGLSKELL 944 (1549)
T ss_pred hhHhhhhhHHHHHHHHHHhhcccccccceeehhhhhcccccchHHHHHHHHHHHHHHhcccccccCCCCCccccHHHH
Confidence 8888887777776666532111 11234778888999999999999999999988652 2445677776
No 89
>PF14676 FANCI_S2: FANCI solenoid 2; PDB: 3S51_A 3S4Z_A 3S4W_A.
Probab=76.38 E-value=3.6 Score=44.10 Aligned_cols=120 Identities=14% Similarity=0.199 Sum_probs=88.0
Q ss_pred HHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000609 246 HEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1393)
Q Consensus 246 h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1393)
-+++.++++..+..-..++-++-+.+.+.....-..=+.+|+.|.... ......|.+..++|+.-+....+++-...+.
T Consensus 39 ~~IL~~~fk~h~~~r~~Ile~l~~rI~~~s~~~~~~~idlL~~lv~~~-p~~vle~~~~l~~~ld~l~~lp~~~a~~ll~ 117 (158)
T PF14676_consen 39 IQILLELFKVHEMIRSEILEQLLNRIVTKSSSPSSQYIDLLSELVRKA-PLTVLECSSKLKELLDYLSFLPGDVAIGLLR 117 (158)
T ss_dssp HHHHHHHHHH-GGGHHHHHHHHHHHHHH--SS--HHHHHHHHHHHHH--HHHHS-S-HHHHGGGGGTTTS-HHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHC-hHHHHHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 467888888888888888888877777665543344578888887763 2566788888999999999999999999999
Q ss_pred HhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 000609 326 HVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1393)
Q Consensus 326 ~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~ 368 (1393)
++-.++..+++ ....++--|++-+.--|..+|..||..+++
T Consensus 118 Al~PLi~~s~~--lrd~lilvLRKamf~r~~~~R~~Av~Gfl~ 158 (158)
T PF14676_consen 118 ALLPLIKFSPS--LRDSLILVLRKAMFSRELDARQMAVNGFLQ 158 (158)
T ss_dssp HHHHHHTT-HH--HHHHHHHHHHHHTT-SSHHHHHHHHHHHH-
T ss_pred HHHHHHhcCHH--HHHHHHHHHHHHHccccHHHHHHHHHHhcC
Confidence 99998887764 234678888888999999999999998864
No 90
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=75.75 E-value=1.9e+02 Score=37.23 Aligned_cols=303 Identities=16% Similarity=0.147 Sum_probs=169.9
Q ss_pred HHHHHHhcch--hhhcCCCcchHHHHHHH---HHHHHhhcCCCC--------CC------ChhHHHHHHHHHHH-----h
Q 000609 53 QPFLNAIVQP--VLLKHQDKDVKLLVATC---ICEITRITAPEA--------PY------SDDVLKDIFQLIVG-----T 108 (1393)
Q Consensus 53 ~~~~~~Lv~~--~LL~HkD~~Vr~~vAcC---LadIlRI~APda--------Py------td~~LkdIF~l~v~-----q 108 (1393)
+|+...+|+. ++|+||.++||.-.|-- |+-|+.-|.-.+ -| ..+.|--|.+.+.. -
T Consensus 599 kp~l~~ivStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~ 678 (975)
T COG5181 599 KPHLSMIVSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHR 678 (975)
T ss_pred CcchHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhc
Confidence 3666677766 78999999999876543 333444222221 11 11334444444433 3
Q ss_pred ccCCCCCCCCChhhHHHHHHHH------HhhhhhhhcccCCch-HHHHHHHHHHHHhhc--CCChhhHHHHHHHHHHHHh
Q 000609 109 FSGLKDTGGPSFGRRVVILETL------AKYRSCVVMLDLECD-ELVNEMYSTFFAVAS--DDHPESVLSSMQTIMIVLL 179 (1393)
Q Consensus 109 f~~L~d~~~p~f~~~~~lLe~L------a~vks~vl~~DL~~~-~Li~~lF~~ff~~v~--~~~~~~v~~~m~~IL~~vI 179 (1393)
|+.+.-|-+.-.+.-.-||.+= ..++..-.+|+...+ -=..+-.+.+|+++. .++.+.+......-+.-|-
T Consensus 679 ~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~nKeiRR~A~~tfG~Is 758 (975)
T COG5181 679 FRSMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSWNKEIRRNATETFGCIS 758 (975)
T ss_pred ccccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHhhHHHHHhhhhhhhhHH
Confidence 4455555555555555555542 234433356666422 224556677777764 2455555554444443322
Q ss_pred cccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHH---hhcCCCCC----CCCchhHHHH-HHH
Q 000609 180 EESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVS---SMSGDSRP----GHSHIDYHEV-IYD 251 (1393)
Q Consensus 180 ~Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~---~l~~d~~~----~~~~~~~h~L-i~e 251 (1393)
.. -=|++||+++|+++.-+... .++|..-+=.+-.-.|.-|+= +|.+=..+ .+..+++.-. ..-
T Consensus 759 ~a--iGPqdvL~~LlnnLkvqeRq------~RvctsvaI~iVae~cgpfsVlP~lm~dY~TPe~nVQnGvLkam~fmFey 830 (975)
T COG5181 759 RA--IGPQDVLDILLNNLKVQERQ------QRVCTSVAISIVAEYCGPFSVLPTLMSDYETPEANVQNGVLKAMCFMFEY 830 (975)
T ss_pred hh--cCHHHHHHHHHhcchHHHHH------hhhhhhhhhhhhHhhcCchhhHHHHHhcccCchhHHHHhHHHHHHHHHHH
Confidence 11 24899999999998532110 112211111111111222321 11110111 1122344433 334
Q ss_pred HHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000609 252 VYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1393)
Q Consensus 252 L~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1393)
+.+.+-+-+.++.|.||+-|...|...|+.|..++-.+--.+ |.--....=.+.+-..--.-|.+|.|=..+-+....+
T Consensus 831 ig~~s~dYvy~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~gtg~eda~IHLlNllwpNIle~sPhvi~~~~Eg~e~~ 910 (975)
T COG5181 831 IGQASLDYVYSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCPGTGDEDAAIHLLNLLWPNILEPSPHVIQSFDEGMESF 910 (975)
T ss_pred HHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHhhhhccCCCcHHHHHHHHHHHHH
Confidence 678888999999999999999999999999999998876553 2211222223333333345688898888777766553
Q ss_pred HhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHH
Q 000609 331 LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVIC 367 (1393)
Q Consensus 331 L~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~ 367 (1393)
-..-. ..-+.+++..-|.-|--+||.+-+.++.
T Consensus 911 ~~~lg----~g~~m~Yv~qGLFHPs~~VRk~ywtvyn 943 (975)
T COG5181 911 ATVLG----SGAMMKYVQQGLFHPSSTVRKRYWTVYN 943 (975)
T ss_pred HHHhc----cHHHHHHHHHhccCchHHHHHHHHHHHh
Confidence 22111 2358899999999999999998655554
No 91
>smart00638 LPD_N Lipoprotein N-terminal Domain.
Probab=74.12 E-value=2.7e+02 Score=35.87 Aligned_cols=95 Identities=21% Similarity=0.156 Sum_probs=59.5
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 000609 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 335 (1393)
.|..+....|++++. ..-...+|..|+..|.++-... -....+-+|.-|+++- ..++||++.+-.+ +.++|
T Consensus 475 ~~~~i~~l~~~l~~~-~~~~~~iR~~Av~Alr~~a~~~---p~~v~~~l~~i~~n~~--e~~EvRiaA~~~l---m~t~P 545 (574)
T smart00638 475 HPSSIKVLEPYLEGA-EPLSTFIRLAAILALRNLAKRD---PRKVQEVLLPIYLNRA--EPPEVRMAAVLVL---METKP 545 (574)
T ss_pred ChhHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHhC---chHHHHHHHHHHcCCC--CChHHHHHHHHHH---HhcCC
Confidence 577777777777632 2235679999999999775321 1244556777776655 4577999877653 45668
Q ss_pred CCCChHHHHHHHHHHhCCchhHHHHHH
Q 000609 336 SRADAPQILTALCDRLLDFDENVRKQV 362 (1393)
Q Consensus 336 ~~~~~~ei~~~L~~rL~D~DekVR~aa 362 (1393)
+... +-......-.|++..|+..+
T Consensus 546 ~~~~---l~~ia~~l~~E~~~QV~sfv 569 (574)
T smart00638 546 SVAL---LQRIAELLNKEPNLQVASFV 569 (574)
T ss_pred CHHH---HHHHHHHHhhcCcHHHHHHh
Confidence 6432 22222333468888888764
No 92
>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]
Probab=73.52 E-value=3.6e+02 Score=37.07 Aligned_cols=179 Identities=14% Similarity=0.151 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhhhhhhHHHHHH-------HHHhhcCCCCCCCCchh--HHHHHHHHHhhcchhhh-hhhhhhcccccCC
Q 000609 205 ARRLAMNVIEQCAGKLEAGIKQF-------LVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILS-GVVPYLTGELLTD 274 (1393)
Q Consensus 205 a~~lA~~vi~~~~dkl~~~i~q~-------f~~~l~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~-~ViP~Le~eL~se 274 (1393)
+--+|.....+|-..+..+|.+| |+..++.+=.-=+..++ +-.-+.+|....|+.+. .|+|.|=....+.
T Consensus 515 ~dy~sV~~rsNcy~~l~~~ia~~~~y~~~~f~~L~t~Kv~HWd~~irelaa~aL~~Ls~~~pk~~a~~~L~~lld~~ls~ 594 (1133)
T KOG1943|consen 515 IDYFSVTNRSNCYLDLCVSIAEFSGYREPVFNHLLTKKVCHWDVKIRELAAYALHKLSLTEPKYLADYVLPPLLDSTLSK 594 (1133)
T ss_pred cchhhhhhhhhHHHHHhHHHHhhhhHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHhhHHhhcccchhhhhhhhcCC
Confidence 34566666777777777777766 44444332000001111 22334458889999999 5899998989999
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCc
Q 000609 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1393)
Q Consensus 275 ~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~ 354 (1393)
+...|--++-..|.++++-. .-+|-+.. ..+=|++|... ++..++++-.+.
T Consensus 595 ~~~~r~g~~la~~ev~~~~~----~l~~~~~~---------l~e~~i~~l~~----------------ii~~~~~~~~~r 645 (1133)
T KOG1943|consen 595 DASMRHGVFLAAGEVIGALR----KLEPVIKG---------LDENRIAGLLS----------------IIPPICDRYFYR 645 (1133)
T ss_pred ChHHhhhhHHHHHHHHHHhh----hhhhhhhh---------hHHHHhhhhhh----------------hccHHHHHHhcc
Confidence 99999999999998887521 11111111 12334444322 222333333333
Q ss_pred h--hHHHHHHHHHHHHhhhhhcC----CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000609 355 D--ENVRKQVVAVICDVACHALN----SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1393)
Q Consensus 355 D--ekVR~aaV~ai~~la~~~l~----~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~ 413 (1393)
- +..|.++++.|..+.-.... .+.......+++-.++-+ .+|..|...+++++..|+.
T Consensus 646 g~~~lmr~~~~~~Ie~~s~s~~~~~~~~v~e~~~~ll~~~l~~~n-~i~~~av~av~~l~s~y~~ 709 (1133)
T KOG1943|consen 646 GQGTLMRQATLKFIEQLSLSKDRLFQDFVIENWQMLLAQNLTLPN-QIRDAAVSAVSDLVSTYVK 709 (1133)
T ss_pred chHHHHHHHHHHHHHHhhhccchhHHHHHHHHHHHHHHHhhcchH-HHHHHHHHHHHHHHHHHHh
Confidence 3 56666666666655444433 222233344555555555 7999999999999998864
No 93
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism]
Probab=72.92 E-value=1.8e+02 Score=41.13 Aligned_cols=247 Identities=18% Similarity=0.263 Sum_probs=134.4
Q ss_pred HhccCCCCC---CCCChhhHHHHHHHHHhhhhhh-hcccCCchHHHHHH---------HHHHHHhhcCCChhhHHHHHHH
Q 000609 107 GTFSGLKDT---GGPSFGRRVVILETLAKYRSCV-VMLDLECDELVNEM---------YSTFFAVASDDHPESVLSSMQT 173 (1393)
Q Consensus 107 ~qf~~L~d~---~~p~f~~~~~lLe~La~vks~v-l~~DL~~~~Li~~l---------F~~ff~~v~~~~~~~v~~~m~~ 173 (1393)
.+|++++.| .+....++.++|.++-.+-.-- ..+|-.-++||..| .+..+..+..--|+++...|..
T Consensus 768 G~~p~~~~p~~~g~k~~~k~~~~l~~l~nIL~Gy~~~l~~~~~~li~~Lr~p~Lp~~ew~~~~s~~~~Rlp~~l~~~~~~ 847 (2196)
T KOG0368|consen 768 GSFPRLGSPAIEGNKPHQKFHSLLNRLENILAGYDPKLDETVQELIKVLRDPELPYLEWQEHISALANRLPPNLDKSLES 847 (2196)
T ss_pred ccccccCCccccccchHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHhcCCCcChHHHHHHHHHHhccCChhHHHHHHH
Confidence 467777766 3334455677777765532111 11121134555555 4555666667778999999988
Q ss_pred HHHHHhcccccccHHHHHHHHHh-hcC-CCcH---------HHHHHHHHHHHHhhhh--------hhHHH--HHHHHHhh
Q 000609 174 IMIVLLEESEDIQEDLLVILLSA-LGR-NKND---------TARRLAMNVIEQCAGK--------LEAGI--KQFLVSSM 232 (1393)
Q Consensus 174 IL~~vI~Ese~vp~~vLd~IL~~-l~~-~~~~---------~a~~lA~~vi~~~~dk--------l~~~i--~q~f~~~l 232 (1393)
++..-..-....|...|..||.. +.. +.++ |--+|..+-+..-... |+.|+ -+||+
T Consensus 848 ~~~~~~s~~t~FPakql~~il~~~~~~~~~~~~~~~~~~~~pl~~l~~~y~~g~~~H~~~v~~~Lle~Yl~VEk~F~--- 924 (2196)
T KOG0368|consen 848 LVAKSASRITQFPAKQLAKILDAHLATLNRAEREVLFVNIQPLLKLVSRYSGGLEAHAKEVVHDLLEEYLEVEKLFN--- 924 (2196)
T ss_pred HHHHHhhhcccCcHHHHHHHHHHHhhccccccchhhhhhhhHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHhc---
Confidence 88887776668999999988853 321 1111 2222333222221111 22221 12332
Q ss_pred cCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCC-hHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhc
Q 000609 233 SGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQ-LDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKR 311 (1393)
Q Consensus 233 ~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~-~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R 311 (1393)
+ ....+-+.+..|-+-.+.-+..|+-++- ++.+ ..--.+.+.+|+.|-. ++ ...++.|..-|.+
T Consensus 925 -~------~~~~~e~~i~~lr~~~~~d~~kVv~~i~---SHs~i~~KN~Lv~~ll~~l~~-~s----~~~~~~f~~iL~~ 989 (2196)
T KOG0368|consen 925 -G------RDSHYEDVILRLREENKKDLKKVVDIIL---SHSQIKSKNKLVLALLDQLKP-PS----SKVSDEFRDILRK 989 (2196)
T ss_pred -c------CcchHHHHHHHHHHhhhhHHHHHHHHHH---cchhhhhhhHHHHHHHHHhcC-CC----CCCCHHHHHHHHH
Confidence 1 0112234555666555555556554442 2222 2223455566665554 33 3455677777777
Q ss_pred ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH-------------------HHHHhCCc---------------hhH
Q 000609 312 LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA-------------------LCDRLLDF---------------DEN 357 (1393)
Q Consensus 312 ~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~-------------------L~~rL~D~---------------Dek 357 (1393)
+.+-+...-.++.-.|.+||...|+..+..+.++. ...+|.|+ |+.
T Consensus 990 l~~L~~~~~~eVal~Ar~iLi~~ps~~~R~n~~e~i~~s~i~~~g~~~~~~~~~~l~~lidS~~~v~dvL~~fF~H~d~~ 1069 (2196)
T KOG0368|consen 990 LTELNHTNTSEVALKARQILIQSPSYELRHNQIESILKSSIVMTGYQFKKPCLEILKELIDSNLSVFDVLPGFFYHSDPT 1069 (2196)
T ss_pred HHhhccchHHHHHHHHHHHHHhCcchhhhHHHHHHHHHhhhhcccCcccccchhHHHhhccchhhHHHHHHHhhccccHH
Confidence 77777777777777777888776653322222221 11355565 888
Q ss_pred HHHHHHHHHHHhhh
Q 000609 358 VRKQVVAVICDVAC 371 (1393)
Q Consensus 358 VR~aaV~ai~~la~ 371 (1393)
|+.++++++..-|+
T Consensus 1070 v~~~alevYv~ray 1083 (2196)
T KOG0368|consen 1070 VSSAALEVYVRRAY 1083 (2196)
T ss_pred HHHHHHHHHHHHhh
Confidence 88888887766443
No 94
>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []. Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....
Probab=71.69 E-value=7.2 Score=29.97 Aligned_cols=29 Identities=24% Similarity=0.251 Sum_probs=24.1
Q ss_pred HHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 382 VKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 382 L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
+-.+.+.+.|..+.||..|...|+.+.+.
T Consensus 2 lp~l~~~l~D~~~~VR~~a~~~l~~i~~~ 30 (31)
T PF02985_consen 2 LPILLQLLNDPSPEVRQAAAECLGAIAEH 30 (31)
T ss_dssp HHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence 44567888999999999999999999863
No 95
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=70.92 E-value=3.5e+02 Score=35.75 Aligned_cols=140 Identities=15% Similarity=0.139 Sum_probs=78.8
Q ss_pred hhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhc-cccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHhhcCCh-
Q 000609 623 QFMQSCMDILGILARFSPLLLGGTEEELVNLLKEE-NEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSR- 700 (1393)
Q Consensus 623 ~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~-~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp- 700 (1393)
.-.++|-.++.++|+.+|.=|-.....+-+++... |-.+.-..++.+++.... -|.....+.+.|.++...-..
T Consensus 196 ~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKLF~aLtpl----EPRLgKKLieplt~li~sT~Am 271 (877)
T KOG1059|consen 196 SVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKLFAALTPL----EPRLGKKLIEPITELMESTVAM 271 (877)
T ss_pred hHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHHHhhcccc----CchhhhhhhhHHHHHHHhhHHH
Confidence 35677889999999999999999999999998873 444445556666555442 233445566666665542211
Q ss_pred HHHHHHHHHHHhhcCCCcc----chHHHHHHHHHHhhhhcC-CCch-HHHHHHHHHhhcccccccchHHHHH
Q 000609 701 RQAKYAVHALAAITKDDGL----KSLSVLYKRLVDMLEEKT-HLPA-VLQSLGCIAQTAMPVFETRESEIEE 766 (1393)
Q Consensus 701 ~qAK~Av~~Laa~~~~~~~----~~~~~L~~~L~~~L~~~~-~l~t-~L~sL~~Ia~~ap~vfe~~~~eI~~ 766 (1393)
.--=..|+++.+..-..|. .++..-+++|..-+++.+ |+-- -|-+++-|++.+|.....+.+-|..
T Consensus 272 SLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLlam~KI~ktHp~~Vqa~kdlIlr 343 (877)
T KOG1059|consen 272 SLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLAMSKILKTHPKAVQAHKDLILR 343 (877)
T ss_pred HHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHHHHHHhhhCHHHHHHhHHHHHH
Confidence 1111234444443222221 223333455555555443 3221 1345666667777766665544443
No 96
>PF12765 Cohesin_HEAT: HEAT repeat associated with sister chromatid cohesion
Probab=70.58 E-value=5.4 Score=33.26 Aligned_cols=39 Identities=15% Similarity=0.228 Sum_probs=28.3
Q ss_pred HHHhhhhhcCCCC-HHHHHHHHHhhccCChhHHHHHHHHH
Q 000609 366 ICDVACHALNSIP-VETVKLVAERLRDKSVLVKRYTMERL 404 (1393)
Q Consensus 366 i~~la~~~l~~v~-~e~L~~l~eR~rDKK~~VR~eAm~~L 404 (1393)
+..+....+.... ..++..+..|+.|.++.||+.|++.|
T Consensus 3 l~~iv~~dp~ll~~~~v~~~i~~rl~D~s~~VR~aav~ll 42 (42)
T PF12765_consen 3 LSSIVEKDPTLLDSSDVQSAIIRRLSDSSPSVREAAVDLL 42 (42)
T ss_pred HHHHHhcCccccchHHHHHHHHHHhcCCChHHHHHHHHHC
Confidence 4444444444443 35678999999999999999998754
No 97
>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]
Probab=69.96 E-value=1.3e+02 Score=40.28 Aligned_cols=128 Identities=22% Similarity=0.265 Sum_probs=94.8
Q ss_pred CCCCchhHHHHHHHHHhhcchhh-----hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHH-HHHhc
Q 000609 238 PGHSHIDYHEVIYDVYRCSPQIL-----SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFS-EFLKR 311 (1393)
Q Consensus 238 ~~~~~~~~h~Li~eL~~~~P~lL-----~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~-~fL~R 311 (1393)
++...-.+|+.+.-+-...|.-. ...+|.|=+-|.-.|..+|+-+++++-..+...+ .+...|-+++- .+|.=
T Consensus 880 ~~~~K~~yl~~LshVl~~vP~~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~-tL~t~~~~Tlvp~lLsl 958 (1030)
T KOG1967|consen 880 PGSQKHNYLEALSHVLTNVPKQVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESE-TLQTEHLSTLVPYLLSL 958 (1030)
T ss_pred CccchhHHHHHHHHHHhcCCHHhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhcc-ccchHHHhHHHHHHHhc
Confidence 34444457888777777777521 2356677778999999999999999998887755 57777766554 66665
Q ss_pred ccCCC---hhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHHHhCCchhHHHHHHHHHH
Q 000609 312 LTDRI---VAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDRLLDFDENVRKQVVAVI 366 (1393)
Q Consensus 312 ~~D~s---~~VR~~~v~~~~~iL~~~p~~---~~~~ei~~~L~~rL~D~DekVR~aaV~ai 366 (1393)
..|-+ ..||...+++...+..--|.+ ....+++.+|...|-|+--.||.+||.+=
T Consensus 959 s~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~eAv~tR 1019 (1030)
T KOG1967|consen 959 SSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRKEAVDTR 1019 (1030)
T ss_pred CCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHHHHHHHh
Confidence 55555 789999999987755533432 33458999999999999999999988753
No 98
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=69.23 E-value=1.9e+02 Score=33.67 Aligned_cols=145 Identities=14% Similarity=0.200 Sum_probs=84.1
Q ss_pred hhhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcc---hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC
Q 000609 217 AGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSP---QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP 293 (1393)
Q Consensus 217 ~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P---~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~ 293 (1393)
..+++.||.+-...++... -.+........++..| .+.+ .++.+.+|.+-.-|.+.++.+|..|.++|..|=..|
T Consensus 88 ~~~Ik~~i~~Vc~~~~s~~-lns~~Q~agLrlL~nL-tv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nLS~np 165 (254)
T PF04826_consen 88 QEQIKMYIPQVCEETVSSP-LNSEVQLAGLRLLTNL-TVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNLSENP 165 (254)
T ss_pred HHHHHHHHHHHHHHHhcCC-CCCHHHHHHHHHHHcc-CCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHhccCH
Confidence 3445555555554444432 1111112233444444 1222 445566777766678899999999999998776665
Q ss_pred CC---ChhhhcHHHHHHHHhcccCCChhHHHHH-HHHhHHHHhcCC------CC---------CChHHHHHHHHHHhCCc
Q 000609 294 GS---ANNEQFHSVFSEFLKRLTDRIVAVRMSV-LEHVKSCLLTDP------SR---------ADAPQILTALCDRLLDF 354 (1393)
Q Consensus 294 ~~---~~~~~~~~~w~~fL~R~~D~s~~VR~~~-v~~~~~iL~~~p------~~---------~~~~ei~~~L~~rL~D~ 354 (1393)
.. -+..+=++-|..++.+-.+.+.-+|+.+ ++.+...+.... .. .+.+.+.+.|......+
T Consensus 166 ~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~~~~~~~~~~~~~~~~~L~~~~~e~~~~~~~l~~l~~h~ 245 (254)
T PF04826_consen 166 DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENIKKEAYVFVQDDFSEDSLFSLFGESSQLAKKLQALANHP 245 (254)
T ss_pred HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhhCcccceeccccCCchhHHHHHccHHHHHHHHHHHHcCC
Confidence 21 1233446677778888777777777543 344433333221 00 23445667777777889
Q ss_pred hhHHHHHHH
Q 000609 355 DENVRKQVV 363 (1393)
Q Consensus 355 DekVR~aaV 363 (1393)
|+.||.+||
T Consensus 246 d~ev~~~v~ 254 (254)
T PF04826_consen 246 DPEVKEQVI 254 (254)
T ss_pred CHHHhhhcC
Confidence 999998864
No 99
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=68.23 E-value=41 Score=45.83 Aligned_cols=168 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred CCCCCchhHHHHHHHHHhh--cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHH-----
Q 000609 237 RPGHSHIDYHEVIYDVYRC--SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFL----- 309 (1393)
Q Consensus 237 ~~~~~~~~~h~Li~eL~~~--~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL----- 309 (1393)
......+++-+|+.++-++ .-..|-.|+|++-+-+.....++|..|++||.++++.-. ++....-.+|.++|
T Consensus 435 k~~~tK~~ALeLl~~lS~~i~de~~LDRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr-~~~~~daniF~eYlfP~L~ 513 (1431)
T KOG1240|consen 435 KTIQTKLAALELLQELSTYIDDEVKLDRVLPYFVHLLMDSEADVRATALETLTELLALVR-DIPPSDANIFPEYLFPHLN 513 (1431)
T ss_pred hcchhHHHHHHHHHHHhhhcchHHHHhhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhcc-CCCcccchhhHhhhhhhhH
Q ss_pred hcccC-CChhHHHHHHHHhHHHHh------------------cCCCC-------------CChHHHHHHHHHHhCCchhH
Q 000609 310 KRLTD-RIVAVRMSVLEHVKSCLL------------------TDPSR-------------ADAPQILTALCDRLLDFDEN 357 (1393)
Q Consensus 310 ~R~~D-~s~~VR~~~v~~~~~iL~------------------~~p~~-------------~~~~ei~~~L~~rL~D~Dek 357 (1393)
.=.+| -...||++...+.+.+-. +.|.. .+..-+...+...|.|++.-
T Consensus 514 ~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~ 593 (1431)
T KOG1240|consen 514 HLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPI 593 (1431)
T ss_pred hhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchH
Q ss_pred HHHHHHHHHHHhhhhhcCCCCHHHH-HHHHHhhccCChhHHHHHHHHHH
Q 000609 358 VRKQVVAVICDVACHALNSIPVETV-KLVAERLRDKSVLVKRYTMERLA 405 (1393)
Q Consensus 358 VR~aaV~ai~~la~~~l~~v~~e~L-~~l~eR~rDKK~~VR~eAm~~La 405 (1393)
||.+-++.|+.+..+--..=+.++| ..|--=+-||.+..|..=.+.+.
T Consensus 594 Vkr~Lle~i~~LC~FFGk~ksND~iLshLiTfLNDkDw~LR~aFfdsI~ 642 (1431)
T KOG1240|consen 594 VKRALLESIIPLCVFFGKEKSNDVILSHLITFLNDKDWRLRGAFFDSIV 642 (1431)
T ss_pred HHHHHHHHHHHHHHHhhhcccccchHHHHHHHhcCccHHHHHHHHhhcc
No 100
>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II
Probab=68.03 E-value=2.4e+02 Score=32.85 Aligned_cols=163 Identities=14% Similarity=0.161 Sum_probs=85.0
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHhhhhhc-CCCCHH----HHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCC
Q 000609 345 TALCDRLLDFDENVRKQVVAVICDVACHAL-NSIPVE----TVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1393)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~la~~~l-~~v~~e----~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~ 419 (1393)
+.|...|.+.|+.+|..++..++.+...-. ..++.+ ++....+|+.|.. .|.- |+.+|..|.+...
T Consensus 2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~L~~~ev~~L~~F~~~rl~D~~-~~~~-~l~gl~~L~~~~~------- 72 (262)
T PF14500_consen 2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDFLSRQEVQVLLDFFCSRLDDHA-CVQP-ALKGLLALVKMKN------- 72 (262)
T ss_pred cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhhccHHHHHHHHHHHHHHhccHh-hHHH-HHHHHHHHHhCcC-------
Confidence 467889999999999999999887765443 223332 2467788886653 3433 3777777775321
Q ss_pred cchhccccchHHHhhhhcccCCCchhHHHHhhccCcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHH
Q 000609 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRHWVRIFSGFDRIEMKALEKILEQKQRLQQEMQR 499 (1393)
Q Consensus 420 ~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~~~~~~R~~~ll~l~~~lD~~~~kal~~il~~k~~l~~~~~~ 499 (1393)
+|.... ..++.. +++..-+.......|...+--+-.-++.. ..++ +..-..-+..
T Consensus 73 --------~~~~~~---------~~i~~~-l~~~~~~q~~~q~~R~~~~~ll~~l~~~~-~~~l------~~~~~~fv~~ 127 (262)
T PF14500_consen 73 --------FSPESA---------VKILRS-LFQNVDVQSLPQSTRYAVYQLLDSLLENH-REAL------QSMGDDFVYG 127 (262)
T ss_pred --------CChhhH---------HHHHHH-HHHhCChhhhhHHHHHHHHHHHHHHHHHh-HHHH------HhchhHHHHH
Confidence 011110 112333 23344444555566654332222222221 1122 1111233445
Q ss_pred HHHHHhhhcCCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 000609 500 YLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILD 544 (1393)
Q Consensus 500 ~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~ 544 (1393)
|+++++ |+..|..---+-+.+..+.+.|+-+.-+++-++.++
T Consensus 128 ~i~~~~---gEkDPRnLl~~F~l~~~i~~~~~~~~~~e~lFd~~~ 169 (262)
T PF14500_consen 128 FIQLID---GEKDPRNLLLSFKLLKVILQEFDISEFAEDLFDVFS 169 (262)
T ss_pred HHHHhc---cCCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHhh
Confidence 555543 333466555555556677777875444444455444
No 101
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.72 E-value=14 Score=46.49 Aligned_cols=141 Identities=21% Similarity=0.192 Sum_probs=85.3
Q ss_pred hhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-----C
Q 000609 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-----D 334 (1393)
Q Consensus 262 ~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~--~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~-----~ 334 (1393)
+.+|.+-.-|.+.+..+|-.|+-.||.+.++.. .+++-.+ .+-...|.=++.... ..++..+...|.+ +
T Consensus 152 gavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~-g~l~pLl~~l~~~~~---~~~lRn~tW~LsNlcrgk~ 227 (514)
T KOG0166|consen 152 GAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSC-GALDPLLRLLNKSDK---LSMLRNATWTLSNLCRGKN 227 (514)
T ss_pred CchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhh-cchHHHHHHhccccc---hHHHHHHHHHHHHHHcCCC
Confidence 456667777889999999999999999998742 1111111 122223333333232 3444444443332 3
Q ss_pred CC--CCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC----CHHHHHHHHHhhccCChhHHHHHHHHHHH
Q 000609 335 PS--RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI----PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 335 p~--~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v----~~e~L~~l~eR~rDKK~~VR~eAm~~La~ 406 (1393)
|+ .+....++++|...|+..|+.|...||-+++-++-...+.+ ...+...|-+.+.-.+..|+.-|+..+|+
T Consensus 228 P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN 305 (514)
T KOG0166|consen 228 PSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN 305 (514)
T ss_pred CCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence 43 34567899999999999999999999888886654333322 11223344555555556666555555554
No 102
>KOG0413 consensus Uncharacterized conserved protein related to condensin complex subunit 1 [Function unknown]
Probab=67.20 E-value=63 Score=43.14 Aligned_cols=131 Identities=11% Similarity=0.080 Sum_probs=93.7
Q ss_pred ChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCc
Q 000609 275 QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF 354 (1393)
Q Consensus 275 ~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~ 354 (1393)
-..+|..++-|+|+|.-+++ .+++.|-+.+..=|....| +.||--.|=+..+|-.. +..-..--++.+..+|.||
T Consensus 944 ~~~vra~~vvTlakmcLah~-~LaKr~~P~lvkeLe~~~~--~aiRnNiV~am~D~C~~--YTam~d~YiP~I~~~L~Dp 1018 (1529)
T KOG0413|consen 944 SDKVRAVGVVTLAKMCLAHD-RLAKRLMPMLVKELEYNTA--HAIRNNIVLAMGDICSS--YTAMTDRYIPMIAASLCDP 1018 (1529)
T ss_pred chHHHHHHHHHHHHHHhhhh-HHHHHHHHHHHHHHHhhhH--HHHhcceeeeehhhHHH--HHHHHHHhhHHHHHHhcCc
Confidence 45689999999999998876 7899888888777766554 56775544443332221 1001123457788899999
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 355 DENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 355 DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
++-||.+++.-+..+-.+.+-.-..+++--+---+-|-+..||..|=-.+|.+...
T Consensus 1019 ~~iVRrqt~ilL~rLLq~~~vKw~G~Lf~Rf~l~l~D~~edIr~~a~f~~~~vL~~ 1074 (1529)
T KOG0413|consen 1019 SVIVRRQTIILLARLLQFGIVKWNGELFIRFMLALLDANEDIRNDAKFYISEVLQS 1074 (1529)
T ss_pred hHHHHHHHHHHHHHHHhhhhhhcchhhHHHHHHHHcccCHHHHHHHHHHHHHHHhh
Confidence 99999999999888877777666777764445566799999988777766666654
No 103
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=66.69 E-value=8.2 Score=48.56 Aligned_cols=104 Identities=16% Similarity=0.124 Sum_probs=71.7
Q ss_pred HHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHH
Q 000609 302 HSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVE 380 (1393)
Q Consensus 302 ~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e 380 (1393)
.+++. .|..|..|+++.||+.++......+.+-|+--.-.-.++++.=-|.|..+.||+.+++.+--+..+.++.=
T Consensus 273 ~dicdsvfvsRy~Dv~d~IRv~c~~~L~dwi~lvP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d--- 349 (740)
T COG5537 273 KDICDSVFVSRYIDVDDVIRVLCSMSLRDWIGLVPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTD--- 349 (740)
T ss_pred HHHHHHHHhhhccchhHHHHHHHHHHHHHHHhcchHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcch---
Confidence 44554 79999999999999999999988887766411001234555556999999999999999887665444321
Q ss_pred HHHHHHHhh---------ccCChhHHHHHHHHHHHHHH
Q 000609 381 TVKLVAERL---------RDKSVLVKRYTMERLADIFR 409 (1393)
Q Consensus 381 ~L~~l~eR~---------rDKK~~VR~eAm~~La~lY~ 409 (1393)
.++.+.+|- +|=.. ||-.+++.|..+--
T Consensus 350 ~ir~f~eRFk~rILE~~r~D~d~-VRi~sik~l~~lr~ 386 (740)
T COG5537 350 AIRRFVERFKDRILEFLRTDSDC-VRICSIKSLCYLRI 386 (740)
T ss_pred HHHHHHHHHHHHHHHHHhhccch-hhHHHHHHHHHHHH
Confidence 333334443 34444 88888888876644
No 104
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=66.52 E-value=19 Score=46.39 Aligned_cols=108 Identities=16% Similarity=0.154 Sum_probs=83.0
Q ss_pred cHHHHH-HHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh-hhcCCCC
Q 000609 301 FHSVFS-EFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIP 378 (1393)
Q Consensus 301 ~~~~w~-~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~v~ 378 (1393)
|+.-+. ..++=|.=.+..||+..+++..+.+-.-+..-...+|.+.+..-+.|+++.+|..+|+++..++. -+-..+.
T Consensus 327 yq~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~~Ln 406 (690)
T KOG1243|consen 327 YQVRIIPVLLKLFKSPDRQIRLLLLQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKRNLN 406 (690)
T ss_pred cccchhhhHHHHhcCcchHHHHHHHHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchhhhc
Confidence 444444 34455666788999999999988664322111234788999999999999999999999999886 3455789
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000609 379 VETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1393)
Q Consensus 379 ~e~L~~l~eR~rDKK~~VR~eAm~~La~lY 408 (1393)
.|+++.++.---|-...+|..+-..||++=
T Consensus 407 ~Ellr~~ar~q~d~~~~irtntticlgki~ 436 (690)
T KOG1243|consen 407 GELLRYLARLQPDEHGGIRTNTTICLGKIA 436 (690)
T ss_pred HHHHHHHHhhCccccCcccccceeeecccc
Confidence 999999988888888899988888887763
No 105
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=66.28 E-value=62 Score=39.54 Aligned_cols=183 Identities=16% Similarity=0.263 Sum_probs=95.7
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHH-HH----HHHhhhhhh--------hcccCCchHHHHHHHHHHHHhhc--
Q 000609 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVI-LE----TLAKYRSCV--------VMLDLECDELVNEMYSTFFAVAS-- 160 (1393)
Q Consensus 96 ~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~l-Le----~La~vks~v--------l~~DL~~~~Li~~lF~~ff~~v~-- 160 (1393)
.-++++|.+|+.-+..+.-..++|-.|..-= ++ .+.-..+.. +.++-+ -..++.+.+++.++
T Consensus 139 ~ai~k~lpl~lqGl~~~~~~~dayL~~~l~~ii~~y~~~Fl~~~~~~~~~~l~~~~~~~~~---~~~~l~~~il~~i~~~ 215 (373)
T PF14911_consen 139 QAIRKSLPLFLQGLGRLSQRQDAYLNQQLRNIIQQYLPRFLPASPSKLVARLSTLLSAFTP---RNEELRKFILQVIRSN 215 (373)
T ss_pred HHHHHHHHHHHHHHHhcccccChHHHHHHHHHHHHHHhHhccCCCccccccccccccchhh---hhhHHHHHHHHHHHHH
Confidence 3489999999998888887788887665321 11 111111111 112222 12233333333332
Q ss_pred -----CCChhhHHHHHHHHHHHHhcc----cccccHHHHHHHH----HhhcC-C----CcHHHHHHHHHHHHHhh-----
Q 000609 161 -----DDHPESVLSSMQTIMIVLLEE----SEDIQEDLLVILL----SALGR-N----KNDTARRLAMNVIEQCA----- 217 (1393)
Q Consensus 161 -----~~~~~~v~~~m~~IL~~vI~E----se~vp~~vLd~IL----~~l~~-~----~~~~a~~lA~~vi~~~~----- 217 (1393)
+.-|+.=......++.+++++ .+..-...++.++ .++.- + -+.-|-.+-..+++.|.
T Consensus 216 fl~~~~~~p~p~l~~vL~fl~~Ll~~~~~~~~~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~~~~~~ 295 (373)
T PF14911_consen 216 FLEFKGSAPPPRLASVLAFLQQLLKRLQRQNENQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQVGSSG 295 (373)
T ss_pred HhcCCCCCCCCcHHHHHHHHHHHHHhcCcccchhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHcccccCcc
Confidence 222333333344445555555 2222222333222 22211 1 11134444444455554
Q ss_pred ---hhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccC--------CChHHHHHHHHHH
Q 000609 218 ---GKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLT--------DQLDTRLKAVGLV 286 (1393)
Q Consensus 218 ---dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~s--------e~~~~Rl~At~ll 286 (1393)
+.++..+++|..+-+. -....++.++..+...+|+++.+.||+++.+|.. +|...|..=-+++
T Consensus 296 ~~~~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~p~lV~~Lip~i~q~l~~~E~kRG~G~d~~lR~~~~rL~ 369 (373)
T PF14911_consen 296 EPREQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELDPQLVISLIPTIRQSLKDSERKRGLGRDVALRKALSRLL 369 (373)
T ss_pred hHHHHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHhcCCcCHHHHHHHHHHH
Confidence 3455666665544221 1223689999999999999999999999998863 3566666555554
Q ss_pred H
Q 000609 287 G 287 (1393)
Q Consensus 287 G 287 (1393)
+
T Consensus 370 ~ 370 (373)
T PF14911_consen 370 S 370 (373)
T ss_pred H
Confidence 4
No 106
>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]
Probab=66.25 E-value=3.1e+02 Score=35.49 Aligned_cols=258 Identities=17% Similarity=0.218 Sum_probs=151.9
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccc-----ccccHHHHHHHHHhhcCCCcH--HHHHHHHHHHHHhh--
Q 000609 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEES-----EDIQEDLLVILLSALGRNKND--TARRLAMNVIEQCA-- 217 (1393)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Es-----e~vp~~vLd~IL~~l~~~~~~--~a~~lA~~vi~~~~-- 217 (1393)
.+.++|.-+.+-++ .|-.++...++.-|..+|--. ..-..+...+++..|...... .--.+..++|.+..
T Consensus 396 ~fd~vl~pLw~g~~-~hrgk~l~sfLkA~g~iiplm~peYa~h~tre~m~iv~ref~spdeemkk~~l~v~~~C~~v~~~ 474 (975)
T COG5181 396 QFDEVLCPLWEGAS-QHRGKELVSFLKAMGFIIPLMSPEYACHDTREHMEIVFREFKSPDEEMKKDLLVVERICDKVGTD 474 (975)
T ss_pred HHHHHHHHHHHHHH-hcCCchHHHHHHHhccccccCChHhhhhhHHHHHHHHHHHhCCchhhcchhHHHHHHHHhccCCC
Confidence 34444444444443 244455555556665555332 245667888888888543221 33344445554332
Q ss_pred --hhhhHHH-HHHHHHh----hcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000609 218 --GKLEAGI-KQFLVSS----MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1393)
Q Consensus 218 --dkl~~~i-~q~f~~~----l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mf 290 (1393)
.++...| ..||+-. +.+| .++....-+-.++..=---+|.+.--++-+ ++.+-++.|..++.++.+.|
T Consensus 475 tp~~lr~~v~pefF~~fw~rr~A~d-r~~~k~v~~ttvilAk~~g~~~v~~kil~~----~~De~ep~r~m~a~~vsri~ 549 (975)
T COG5181 475 TPWKLRDQVSPEFFSPFWRRRSAGD-RRSYKQVVLTTVILAKMGGDPRVSRKILEY----YSDEPEPYRKMNAGLVSRIF 549 (975)
T ss_pred CHHHHHHhhcHHhhchHHHhhhccc-ccccceeehhHHHHHHHcCChHHHHHHHhh----ccCCcchhhhhhhHHHHHHH
Confidence 2333333 2334322 2222 122222223344444344466666555544 55678899999999999999
Q ss_pred cCCCCC-h----------------------------------------hhhc-HHHHHHHHhcccCCChhHHHHHHHHhH
Q 000609 291 AVPGSA-N----------------------------------------NEQF-HSVFSEFLKRLTDRIVAVRMSVLEHVK 328 (1393)
Q Consensus 291 s~~~~~-~----------------------------------------~~~~-~~~w~~fL~R~~D~s~~VR~~~v~~~~ 328 (1393)
+.-|.. | .+-| +.+-..-|++.+-+.|.||+...+.++
T Consensus 550 ~~lg~~~~dErleerl~d~il~Afqeq~~t~~~il~~f~tv~vsl~~r~kp~l~~ivStiL~~L~~k~p~vR~~aadl~~ 629 (975)
T COG5181 550 SRLGRLGFDERLEERLYDSILNAFQEQDTTVGLILPCFSTVLVSLEFRGKPHLSMIVSTILKLLRSKPPDVRIRAADLMG 629 (975)
T ss_pred HhcccccccHHHHHHHHHHHHHHHHhccccccEEEecccceeeehhhccCcchHHHHHHHHHHhcCCCccHHHHHHHHHH
Confidence 876421 1 1122 677889999999999999999888887
Q ss_pred HHHh--cCCC-CCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh-hhcCCCCH---HHHHHHHHhhccCChhHHHHHH
Q 000609 329 SCLL--TDPS-RADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPV---ETVKLVAERLRDKSVLVKRYTM 401 (1393)
Q Consensus 329 ~iL~--~~p~-~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~v~~---e~L~~l~eR~rDKK~~VR~eAm 401 (1393)
.+.. .+.. ..+..-+-..|-+-|-.-+..|=-.+++|||.+-. +.+..... .+|-++..-+|.|..+|-..++
T Consensus 630 sl~~vlk~c~e~~~l~klg~iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mqpPi~~ilP~ltPILrnkh~Kv~~nti 709 (975)
T COG5181 630 SLAKVLKACGETKELAKLGNILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQPPISGILPSLTPILRNKHQKVVANTI 709 (975)
T ss_pred HHHHHHHhcchHHHHHHHhHHHHHhcCcccHHHHHHHHHHHHHHhhhhcccccCCchhhccccccHhhhhhhHHHhhhHH
Confidence 6432 2221 11111122345556667778888888999987654 45554422 3456778888999999999999
Q ss_pred HHHHHHHHH
Q 000609 402 ERLADIFRG 410 (1393)
Q Consensus 402 ~~La~lY~~ 410 (1393)
..+|.+-..
T Consensus 710 ~lvg~I~~~ 718 (975)
T COG5181 710 ALVGTICMN 718 (975)
T ss_pred HHHHHHHhc
Confidence 999888664
No 107
>PF10363 DUF2435: Protein of unknown function (DUF2435)
Probab=65.96 E-value=21 Score=34.98 Aligned_cols=84 Identities=18% Similarity=0.219 Sum_probs=71.5
Q ss_pred cccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHH
Q 000609 268 TGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTAL 347 (1393)
Q Consensus 268 e~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L 347 (1393)
-.+|....+++|-.+..+|.+++..+. .....-+.+..-|+.=..|.++=|=...++....+...+|. ++++.|
T Consensus 9 l~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p~-----~vl~~L 82 (92)
T PF10363_consen 9 LSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHPD-----EVLPIL 82 (92)
T ss_pred HHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHChH-----HHHHHH
Confidence 345677889999999999999999876 34556789999999999999999999999999887777763 688999
Q ss_pred HHHhCCchhH
Q 000609 348 CDRLLDFDEN 357 (1393)
Q Consensus 348 ~~rL~D~Dek 357 (1393)
.+...|.+++
T Consensus 83 ~~~y~~~~~~ 92 (92)
T PF10363_consen 83 LDEYADPSEQ 92 (92)
T ss_pred HHHHhCcccC
Confidence 9988887763
No 108
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=64.71 E-value=1.9e+02 Score=34.45 Aligned_cols=67 Identities=21% Similarity=0.255 Sum_probs=40.5
Q ss_pred HHHHHHHhhccccchhhHHHHHHHhh--cchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000609 648 EELVNLLKEENEIIKEGILHVLAKAG--GTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1393)
Q Consensus 648 ~~L~~lL~~~~~~~~~~~LkiLa~~~--k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~ 714 (1393)
++.++.+.+......+.+|..+.++- +++.+.+......+...+.+....|++++...|.++++.+.
T Consensus 46 ~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ 114 (309)
T PF05004_consen 46 KEAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLA 114 (309)
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHh
Confidence 34455555555555677777776442 22333332223346667777778899888889988865543
No 109
>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=63.74 E-value=79 Score=41.16 Aligned_cols=164 Identities=13% Similarity=0.132 Sum_probs=113.1
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHH---------------H
Q 000609 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSE---------------F 308 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~---------------f 308 (1393)
++--++|.++---|+-|-..+|-|-+.|..+|+.+-..||..+.++-....-++-.--|..|.- .
T Consensus 163 kAIl~lykvFLkYPeAlr~~FprL~EkLeDpDp~V~SAAV~VICELArKnPknyL~LAP~ffkllttSsNNWmLIKiiKL 242 (877)
T KOG1059|consen 163 KAILLLYKVFLKYPEALRPCFPRLVEKLEDPDPSVVSAAVSVICELARKNPQNYLQLAPLFYKLLVTSSNNWVLIKLLKL 242 (877)
T ss_pred HHHHHHHHHHHhhhHhHhhhHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcccccccHHHHHHHhccCCCeehHHHHHH
Confidence 5677888888888999999999999999999999999999999988775543443333333321 2
Q ss_pred HhcccCCChhHHHHHHHHhHHHHhc----------------------CCCCCC-hHHHHHHHHHHhCCchhHHHHHHHHH
Q 000609 309 LKRLTDRIVAVRMSVLEHVKSCLLT----------------------DPSRAD-APQILTALCDRLLDFDENVRKQVVAV 365 (1393)
Q Consensus 309 L~R~~D~s~~VR~~~v~~~~~iL~~----------------------~p~~~~-~~ei~~~L~~rL~D~DekVR~aaV~a 365 (1393)
.+...=..|..+...++-.-.++.+ +|++.. ++-.+..|+..+-|+|.+.+.-.+-+
T Consensus 243 F~aLtplEPRLgKKLieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~asiqLCvqKLr~fiedsDqNLKYlgLla 322 (877)
T KOG1059|consen 243 FAALTPLEPRLGKKLIEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSASIQLCVQKLRIFIEDSDQNLKYLGLLA 322 (877)
T ss_pred HhhccccCchhhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHHHHHHHHHHHhhhhhcCCccHHHHHHHH
Confidence 2444555666666555544433321 222211 22335677778999999999999999
Q ss_pred HHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHH
Q 000609 366 ICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIF 408 (1393)
Q Consensus 366 i~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY 408 (1393)
++.++..++..|... ...+..-+-||..+||-.|+..|--+-
T Consensus 323 m~KI~ktHp~~Vqa~-kdlIlrcL~DkD~SIRlrALdLl~gmV 364 (877)
T KOG1059|consen 323 MSKILKTHPKAVQAH-KDLILRCLDDKDESIRLRALDLLYGMV 364 (877)
T ss_pred HHHHhhhCHHHHHHh-HHHHHHHhccCCchhHHHHHHHHHHHh
Confidence 999999988877553 122345567899999999988764443
No 110
>PF08167 RIX1: rRNA processing/ribosome biogenesis
Probab=63.33 E-value=50 Score=35.56 Aligned_cols=138 Identities=15% Similarity=0.167 Sum_probs=88.0
Q ss_pred chhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhC-CcCcccc----HHHHHHHHhhccc-cchhhHHHHHHHhhcc
Q 000609 602 NKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFS-PLLLGGT----EEELVNLLKEENE-IIKEGILHVLAKAGGT 675 (1393)
Q Consensus 602 Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~-P~lFk~~----~~~L~~lL~~~~~-~~~~~~LkiLa~~~k~ 675 (1393)
+++.+..+..++..--.+.+...+-.+..|+..+...+ |+.|..| +..|...|+..++ .+.+.++.+|...-..
T Consensus 19 ~~~~l~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~ 98 (165)
T PF08167_consen 19 SKSALHKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQCSWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDL 98 (165)
T ss_pred CHHHHHHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 67788888877754333333334456788999999998 9999766 4666777776443 3556677777655332
Q ss_pred hHhhhhcccchHHHHHHHHhhc-CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcc
Q 000609 676 IREQLAATSSSVDLLLERLCLE-GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAM 754 (1393)
Q Consensus 676 ~~e~~~~~~s~l~~~L~~lal~-Gtp~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Ia~~ap 754 (1393)
++.. +. +..+ +||...+....+|....+ ..-....|.+|+.+-+..|
T Consensus 99 ~~~~-p~-----------l~Rei~tp~l~~~i~~ll~l~~~--------------------~~~~~~~l~~L~~ll~~~p 146 (165)
T PF08167_consen 99 IRGK-PT-----------LTREIATPNLPKFIQSLLQLLQD--------------------SSCPETALDALATLLPHHP 146 (165)
T ss_pred hcCC-Cc-----------hHHHHhhccHHHHHHHHHHHHhc--------------------cccHHHHHHHHHHHHHHCC
Confidence 2221 11 1111 356666665555553222 0123467888999999999
Q ss_pred cccccchHHHHHHHHHh
Q 000609 755 PVFETRESEIEEFIKSK 771 (1393)
Q Consensus 755 ~vfe~~~~eI~~fiik~ 771 (1393)
..|-.+...|..+++.-
T Consensus 147 tt~rp~~~ki~~~l~~l 163 (165)
T PF08167_consen 147 TTFRPFANKIESALLSL 163 (165)
T ss_pred ccccchHHHHHHHHHHH
Confidence 99999999998887643
No 111
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=63.10 E-value=78 Score=34.93 Aligned_cols=130 Identities=17% Similarity=0.157 Sum_probs=88.7
Q ss_pred HHHHHHHHHHHhhcC-CCCCh---------------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-------
Q 000609 278 TRLKAVGLVGDLFAV-PGSAN---------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD------- 334 (1393)
Q Consensus 278 ~Rl~At~llG~mfs~-~~~~~---------------~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~------- 334 (1393)
+|+.|..+++.++.. +.-.+ ....++++...+ .|.++.||++.+.....+|...
T Consensus 2 vR~~Al~~L~al~k~~~~r~l~~yW~~llP~~~~~~~~~~~sLlt~il---~Dp~~kvR~aA~~~l~~lL~gsk~~L~~A 78 (182)
T PF13251_consen 2 VRQAALQCLQALAKSTDKRSLFGYWPALLPDSVLQGRPATPSLLTCIL---KDPSPKVRAAAASALAALLEGSKPFLAQA 78 (182)
T ss_pred hhHHHHHHHHHHHHhcCCceeHhhHHHHCCCCCCcCCCCCcchhHHHH---cCCchhHHHHHHHHHHHHHHccHHHHHHH
Confidence 799999999999877 32111 122344444444 5999999999999998887532
Q ss_pred -----CCC---CC---hHHHHHHHHHHh-----CCchhHHHHHHHHHHHHhhhh-hcCCCCHHH----HHHHHHhhccCC
Q 000609 335 -----PSR---AD---APQILTALCDRL-----LDFDENVRKQVVAVICDVACH-ALNSIPVET----VKLVAERLRDKS 393 (1393)
Q Consensus 335 -----p~~---~~---~~ei~~~L~~rL-----~D~DekVR~aaV~ai~~la~~-~l~~v~~e~----L~~l~eR~rDKK 393 (1393)
+.+ .. ...++..+...| ...+..+=.+.+|++..+... .++.++.++ +..+..+++.+.
T Consensus 79 e~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L~~E~~~~~l~q~lK~la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d 158 (182)
T PF13251_consen 79 EESKGPSGSFTSLSSTLASMIMELHRGLLLALQAEKSPPVLTQLLKCLAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRD 158 (182)
T ss_pred HhcCCCCCCcccHHHHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHccCChhhcCHhHHHHHHHHHHHHHhcCC
Confidence 110 11 124444444443 455666777888888877653 356677765 457888999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000609 394 VLVKRYTMERLADIFRG 410 (1393)
Q Consensus 394 ~~VR~eAm~~La~lY~~ 410 (1393)
+.||..+...++-+...
T Consensus 159 ~~v~v~~l~~~~~l~s~ 175 (182)
T PF13251_consen 159 PNVRVAALSCLGALLSV 175 (182)
T ss_pred CcHHHHHHHHHHHHHcC
Confidence 99999999999988764
No 112
>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []. Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.
Probab=61.38 E-value=97 Score=40.11 Aligned_cols=219 Identities=16% Similarity=0.158 Sum_probs=115.0
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHH-HHHHHH
Q 000609 151 MYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAG-IKQFLV 229 (1393)
Q Consensus 151 lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkl~~~-i~q~f~ 229 (1393)
.|..+..++|.-..+.+. .+...+.... -......+++..+....+.+|..+..++|.. .++... ..++|.
T Consensus 348 ~f~~Lv~~lr~l~~~~L~----~l~~~~~~~~--~~~~~r~~~lDal~~aGT~~av~~i~~~I~~--~~~~~~ea~~~l~ 419 (618)
T PF01347_consen 348 KFSRLVRLLRTLSYEDLE----ELYKQLKSKS--KKEQARKIFLDALPQAGTNPAVKFIKDLIKS--KKLTDDEAAQLLA 419 (618)
T ss_dssp HHHHHHHHHTTS-HHHHH----HHHHHHTTS-----HHHHHHHHHHHHHH-SHHHHHHHHHHHHT--T-S-HHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHH----HHHHHHHhhc--cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHc--CCCCHHHHHHHHH
Confidence 366666666544433322 2333332221 2233444455555444455777777777766 333222 223333
Q ss_pred HhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC----C---------CCC
Q 000609 230 SSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV----P---------GSA 296 (1393)
Q Consensus 230 ~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~----~---------~~~ 296 (1393)
.+.. -+-+-.+++|..+.+.++..-...+..+|..|.-.+|.|... . ...
T Consensus 420 ~l~~-----------------~~~~Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~ 482 (618)
T PF01347_consen 420 SLPF-----------------HVRRPTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRC 482 (618)
T ss_dssp HHHH-----------------T-----HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS
T ss_pred HHHh-----------------hcCCCCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchh
Confidence 2211 111233455555555555554456778888888888887642 1 223
Q ss_pred hhhhcHHHHHHHHhc-ccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCc---hhHHHHHHHHHHHHhhhh
Q 000609 297 NNEQFHSVFSEFLKR-LTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDF---DENVRKQVVAVICDVACH 372 (1393)
Q Consensus 297 ~~~~~~~~w~~fL~R-~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~---DekVR~aaV~ai~~la~~ 372 (1393)
....|-.-+..-|+. ....+..-++.++++++++ .+| ++++.|...+.+. ...||.+||.++..++..
T Consensus 483 ~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLgN~--g~~------~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~ 554 (618)
T PF01347_consen 483 IIEKYVPYLEQELKEAVSRGDEEEKIVYLKALGNL--GHP------ESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKH 554 (618)
T ss_dssp --GGGTHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--T-G------GGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT
T ss_pred hHHHHHHHHHHHHHHHhhccCHHHHHHHHHHhhcc--CCc------hhhHHHHhHhhhccccchHHHHHHHHHHHHHhhc
Confidence 455665555555553 3455778999999999884 222 4666666666666 899999988887755443
Q ss_pred hcCCCCHHHHHHHHHhhccCC--hhHHHHHHHHHHH
Q 000609 373 ALNSIPVETVKLVAERLRDKS--VLVKRYTMERLAD 406 (1393)
Q Consensus 373 ~l~~v~~e~L~~l~eR~rDKK--~~VR~eAm~~La~ 406 (1393)
. |..+...+..-..|.. ++||-.|...|.+
T Consensus 555 ~----~~~v~~~l~~I~~n~~e~~EvRiaA~~~lm~ 586 (618)
T PF01347_consen 555 C----PEKVREILLPIFMNTTEDPEVRIAAYLILMR 586 (618)
T ss_dssp -----HHHHHHHHHHHHH-TTS-HHHHHHHHHHHHH
T ss_pred C----cHHHHHHHHHHhcCCCCChhHHHHHHHHHHh
Confidence 3 4344444445545543 6799988877765
No 113
>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]
Probab=61.08 E-value=4.7e+02 Score=33.79 Aligned_cols=216 Identities=20% Similarity=0.180 Sum_probs=122.7
Q ss_pred HHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHh
Q 000609 101 IFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLL 179 (1393)
Q Consensus 101 IF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI 179 (1393)
+.++.-..+.-=..+..| .+-...|.++-++ .|.|.| ..+++...|.+++..+ +..-++|..-.+.|+..+.
T Consensus 47 flr~vn~IL~~Kk~~si~--dRil~fl~~f~~Y----~~~~dpeg~~~V~~~~~h~lRg~-eskdk~VR~r~lqila~~~ 119 (885)
T COG5218 47 FLRVVNTILACKKNPSIP--DRILSFLKRFFEY----DMPDDPEGEELVAGTFYHLLRGT-ESKDKKVRKRSLQILALLS 119 (885)
T ss_pred HHHHHHHhhccccCCCcH--HHHHHHHHHHHHh----cCCCChhhhHHHHHHHHHHHhcc-cCcchhHHHHHHHHHHHHH
Confidence 333333344322334444 3444455544443 477777 6899999998888654 4456789988899998888
Q ss_pred cccccccHHHHHHHHHhhcC---CCcHHHHHHHHHHHHHhhhhhhHHH-HHHHHHhhcCCCCCCCCchhHHHHHHHHHhh
Q 000609 180 EESEDIQEDLLVILLSALGR---NKNDTARRLAMNVIEQCAGKLEAGI-KQFLVSSMSGDSRPGHSHIDYHEVIYDVYRC 255 (1393)
Q Consensus 180 ~Ese~vp~~vLd~IL~~l~~---~~~~~a~~lA~~vi~~~~dkl~~~i-~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~ 255 (1393)
+--..|...+-..++..+.. .+..+.+ ++..+ --||.++ .+ +...+.-.++..+-+.
T Consensus 120 d~v~eIDe~l~N~L~ekl~~R~~DRE~~VR-------------~eAv~~L~~~Qe~-~~-----neen~~~n~l~~~vqn 180 (885)
T COG5218 120 DVVREIDEVLANGLLEKLSERLFDREKAVR-------------REAVKVLCYYQEM-EL-----NEENRIVNLLKDIVQN 180 (885)
T ss_pred HhcchHHHHHHHHHHHHHHHHHhcchHHHH-------------HHHHHHHHHHHhc-cC-----ChHHHHHHHHHHHHhc
Confidence 77777777766666655421 1111111 22111 1233332 11 1222344466555555
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 000609 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 335 (1393)
.|+ .++|..|.- +++. -++|+-.-|.|..|.+...|..+-+.+-.-+---.
T Consensus 181 DPS-----------------~EVRr~all----ni~v--------dnsT~p~IlERarDv~~anRr~vY~r~Lp~iGd~~ 231 (885)
T COG5218 181 DPS-----------------DEVRRLALL----NISV--------DNSTYPCILERARDVSGANRRMVYERCLPRIGDLK 231 (885)
T ss_pred CcH-----------------HHHHHHHHH----Heee--------CCCcchhHHHHhhhhhHHHHHHHHHHHhhhhcchh
Confidence 553 567777642 2222 12467788999999999999877665432111000
Q ss_pred CCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhh
Q 000609 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACH 372 (1393)
Q Consensus 336 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~ 372 (1393)
+.+..+.|. .+.--|.|-|+.||.+++.+|..-...
T Consensus 232 ~lsi~kri~-l~ewgl~dRe~sv~~a~~d~ia~~w~~ 267 (885)
T COG5218 232 SLSIDKRIL-LMEWGLLDREFSVKGALVDAIASAWRI 267 (885)
T ss_pred hccccceeh-hhhhcchhhhhhHHHHHHHHHHHHhcc
Confidence 111111222 455568999999999999988754443
No 114
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=60.71 E-value=28 Score=46.15 Aligned_cols=136 Identities=18% Similarity=0.234 Sum_probs=102.6
Q ss_pred CChHHHHHHHHHHHHhhcCCC-CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhC
Q 000609 274 DQLDTRLKAVGLVGDLFAVPG-SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~~-~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1393)
|--+-|..|..++|.+...-. -.+-...++.+..+ ..|..|.||.++.+.++.+-..-+.....+.+...+..-+.
T Consensus 210 d~~~sr~sacglf~~~~~~~~~~~vk~elr~~~~~l---c~d~~~~Vr~~~a~~l~~~a~~~~~~~~~s~v~~~~~~L~~ 286 (759)
T KOG0211|consen 210 DWFQSRLSACGLFGKLYVSLPDDAVKRELRPIVQSL---CQDDTPMVRRAVASNLGNIAKVLESEIVKSEVLPTLIQLLR 286 (759)
T ss_pred hhhhcchhhhhhhHHhccCCChHHHHHHHHHHHHhh---ccccchhhHHHHHhhhHHHHHHHHHHHHHhhccHHHhhhhh
Confidence 344478888888888887543 22334556666665 58999999999999988765544444455678889999999
Q ss_pred CchhHHHHHHHHHHHHhhh-hhcC-CCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 353 DFDENVRKQVVAVICDVAC-HALN-SIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 353 D~DekVR~aaV~ai~~la~-~~l~-~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
|-.+-||.+|+.....+.. ..-. .+-..+..++-.-.-|+.+.||--.+.....+|...-
T Consensus 287 DdqdsVr~~a~~~~~~l~~l~~~~~d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~ 348 (759)
T KOG0211|consen 287 DDQDSVREAAVESLVSLLDLLDDDDDVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVG 348 (759)
T ss_pred cchhhHHHHHHHHHHHHHHhcCCchhhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhc
Confidence 9999999999999887654 2222 3444556778888999999999999999999999753
No 115
>COG5537 IRR1 Cohesin [Cell division and chromosome partitioning]
Probab=60.40 E-value=51 Score=41.95 Aligned_cols=130 Identities=17% Similarity=0.135 Sum_probs=91.2
Q ss_pred cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHH--H----hcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHH
Q 000609 272 LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEF--L----KRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILT 345 (1393)
Q Consensus 272 ~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~f--L----~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~ 345 (1393)
..-++.+|..++.-+|.-.+. +|+.|..- | .=..|.+..||...++-...+...+|..+-..+..+
T Consensus 285 ~Dv~d~IRv~c~~~L~dwi~l--------vP~yf~k~~~lry~GW~LSDn~~~vRl~v~Kil~~L~s~~p~~d~ir~f~e 356 (740)
T COG5537 285 IDVDDVIRVLCSMSLRDWIGL--------VPDYFRKILGLRYNGWSLSDNHEGVRLLVSKILLFLCSRIPHTDAIRRFVE 356 (740)
T ss_pred cchhHHHHHHHHHHHHHHHhc--------chHHHHhhhcccccccccccchHHHHHHHHHHHHHHHhcCCcchHHHHHHH
Confidence 345778899999999887754 34443321 1 125799999999999999988887787554455665
Q ss_pred HHHHH-----hCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChh---HHHHHHHHHHHHHHHhh
Q 000609 346 ALCDR-----LLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVL---VKRYTMERLADIFRGCC 412 (1393)
Q Consensus 346 ~L~~r-----L~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~---VR~eAm~~La~lY~~~~ 412 (1393)
-+..| ..|.|= ||..+++..|.+ ..+..++.+-+-.+.--|-|=++. +|.++...++++-....
T Consensus 357 RFk~rILE~~r~D~d~-VRi~sik~l~~l--r~lg~L~~SeIlIvsscmlDi~pd~r~~~~E~v~~icK~~aevi 428 (740)
T COG5537 357 RFKDRILEFLRTDSDC-VRICSIKSLCYL--RILGVLSSSEILIVSSCMLDIIPDSRENIVESVESICKIDAEVI 428 (740)
T ss_pred HHHHHHHHHHhhccch-hhHHHHHHHHHH--HHhcccchhHHHHHHHHHhcCCCcchHHHHHHHHHHHHHHHHHH
Confidence 55554 578888 999999999854 444555555554555558888876 77788888877766544
No 116
>PF03378 CAS_CSE1: CAS/CSE protein, C-terminus; InterPro: IPR005043 Mammalian cellular apoptosis susceptibility (CAS) proteins and the yeast chromosome-segregation protein, CSE1 are homologous []. CAS is involved in both cellular apoptosis and proliferation [, ]. Apoptosis is inhibited in CAS-depleted cells, while the expression of CAS correlates to the degree of cellular proliferation. Like CSE1, it is essential for the mitotic checkpoint in the cell cycle (CAS depletion blocks the cell in the G2 phase), and has been shown to be associated with the microtubule network and the mitotic spindle [], as is the protein MEK, which is thought to regulate the intracellular localization (predominantly nuclear vs. predominantly cytosolic) of CAS. In the nucleus, CAS acts as a nuclear transport factor in the importin pathway []. The importin pathway mediates the nuclear transport of several proteins that are necessary for mitosis and further progression. CAS is therefore thought to affect the cell cycle through its effect on the nuclear transport of these proteins []. Since apoptosis also requires the nuclear import of several proteins (such as P53 and transcription factors), it has been suggested that CAS also enables apoptosis by facilitating the nuclear import of at least a subset of these essential proteins []. This entry represents the C-terminal portion of these proteins. Structural studies of the yeast CSE1 protein indicate that this domain binds to both the transport-orchestrating protein RanGTP and the cargo molecule that is being exported [].; GO: 0005515 protein binding; PDB: 1Z3H_B 1WA5_C.
Probab=60.31 E-value=1.1e+02 Score=38.19 Aligned_cols=191 Identities=14% Similarity=0.218 Sum_probs=98.0
Q ss_pred HHHHHHHHHHHhhcCCC-CCCChh---HHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCch---H
Q 000609 74 LLVATCICEITRITAPE-APYSDD---VLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECD---E 146 (1393)
Q Consensus 74 ~~vAcCLadIlRI~APd-aPytd~---~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~---~ 146 (1393)
-|+.-|+.-|+=++.-+ .||.+. +|..|+..+. .+|+||.|. +|+-|+++.. +-.+++-+.+ .
T Consensus 44 eylMk~iMRvl~~~~e~~~p~~~~il~~L~~il~~v~------kNPsnP~Fn--HylFEsi~~l--ir~~~~~~~~~v~~ 113 (435)
T PF03378_consen 44 EYLMKCIMRVLSVLQEDILPIAVEILQHLTAILKEVS------KNPSNPRFN--HYLFESIGAL--IRFVCEADPEAVSQ 113 (435)
T ss_dssp HHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHHHHHHH------TS---HHHH--HHHHHHHHHH--HHHS-GGGHH---H
T ss_pred hHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH------hCCCCcchh--hhHHHHHHHH--HHhccCCChhHHHH
Confidence 36777776666655444 577553 2333333332 357888775 6788999863 1123432222 4
Q ss_pred HHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccc--cccH---HHHHHHHHhhcCCCcH---HHHHHHHHHHHHhhh
Q 000609 147 LVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE--DIQE---DLLVILLSALGRNKND---TARRLAMNVIEQCAG 218 (1393)
Q Consensus 147 Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese--~vp~---~vLd~IL~~l~~~~~~---~a~~lA~~vi~~~~d 218 (1393)
+-..+|-.|-.+...+ -.....+.-.||+.+++-.. .+|+ .++..||+.-.=...+ +.-+|-...|.+.+.
T Consensus 114 ~E~~L~P~f~~ILq~d-V~EF~PYvfQIla~Lle~~~~~~~p~~y~~L~~~Ll~p~lWe~~gniPalvrLL~a~i~k~~~ 192 (435)
T PF03378_consen 114 FEEALFPPFQEILQQD-VQEFIPYVFQILAQLLELRPSSPLPDAYKQLFPPLLSPALWERRGNIPALVRLLQAYIKKDPS 192 (435)
T ss_dssp HHHHHHHHHHHHHHTT--TTTHHHHHHHHHHHHHHSS--S--TTTGGGHHHHTSGGGGGSTTTHHHHHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHcCcchhccCCCcCcHHHHHHHHHHhCch
Confidence 5555555555555432 23555666778888888766 5665 3333444322111121 445677888888876
Q ss_pred hhh-----HHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcch-hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcC
Q 000609 219 KLE-----AGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ-ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1393)
Q Consensus 219 kl~-----~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~-lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~ 292 (1393)
.+. ..|-.-|.-++.++. .+...++|+..|....|. .|...+|+ ..+-++.|+=+.
T Consensus 193 ~i~~~~~l~~iLgvFQkLi~sk~----~D~~gF~LL~~iv~~~p~~~l~~yl~~--------------I~~lll~RLq~s 254 (435)
T PF03378_consen 193 FIVANNQLEPILGVFQKLIASKA----NDHYGFDLLESIVENLPPEALEPYLKQ--------------IFTLLLTRLQSS 254 (435)
T ss_dssp G----S-CHHHHHHHHHHHT-TT----CHHHHHHHHHHHHHHS-HHHHGGGHHH--------------HHHHHHHHHHHC
T ss_pred hhcchhhHHHHHHHHHHHHCCCC----cchHHHHHHHHHHHHCCHHHHHHHHHH--------------HHHHHHHHHhhC
Confidence 552 122233445555432 223456788888877776 45555544 455566666554
Q ss_pred C
Q 000609 293 P 293 (1393)
Q Consensus 293 ~ 293 (1393)
+
T Consensus 255 k 255 (435)
T PF03378_consen 255 K 255 (435)
T ss_dssp -
T ss_pred C
Confidence 4
No 117
>PF05327 RRN3: RNA polymerase I specific transcription initiation factor RRN3; InterPro: IPR007991 This family consists of several eukaryotic proteins which are homologous to the Saccharomyces cerevisiae RRN3 protein. RRN3 is one of the RRN genes specifically required for the transcription of rDNA by RNA polymerase I (Pol I) in the S. cerevisiae [] RNA polymerase I complex within the nucleolus. In mammalian cells, the phosphorylation state of Rrn3 regulates rDNA transcription by determining the steady-state concentration of the Rrn3 [].; PDB: 3TJ1_B.
Probab=60.18 E-value=84 Score=40.57 Aligned_cols=189 Identities=17% Similarity=0.236 Sum_probs=101.1
Q ss_pred HHHHHHhc-cCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc
Q 000609 102 FQLIVGTF-SGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE 180 (1393)
Q Consensus 102 F~l~v~qf-~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~ 180 (1393)
|..++.+| ......+.+.-.+-..+ |....+||-++|=.|..|+..+++.-.- +.++.+.......+..++.
T Consensus 31 Y~~L~~~l~~~~~~~d~~~~~~l~~~---L~~L~~~Vs~Ld~~~~~LV~ail~~~W~----~~~~~~v~~y~~Fl~~Lvs 103 (563)
T PF05327_consen 31 YDELVEQLSDPSESKDAISVSQLIRW---LKALSSCVSLLDSSCKQLVEAILSLNWL----GRDEDFVEAYIQFLINLVS 103 (563)
T ss_dssp HHHHHHHHHS-TT-TTS--HHHHHHH---HHHHHHGGGGG-SCCHHHHHHHHT-TGG----GS-HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcccccCcccccHHHHHHH---HHHHHHHHHHhhhHHHHHHHHHHcCCCC----CCCHHHHHHHHHHHHHHHH
Confidence 45555555 33333344343443444 4455567877887789998888777321 2356777777788888877
Q ss_pred ccccccHHHHHHHHHhhcCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCC--CCCCchhHHHHHHHHHhhcch
Q 000609 181 ESEDIQEDLLVILLSALGRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSR--PGHSHIDYHEVIYDVYRCSPQ 258 (1393)
Q Consensus 181 Ese~vp~~vLd~IL~~l~~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~--~~~~~~~~h~Li~eL~~~~P~ 258 (1393)
....--..+++.+..+|.+.....+-. .+... .......+|.+|..|-+++|.
T Consensus 104 a~~~yl~~vl~~LV~~f~p~~~~~~~~-------------------------~~~~~~~~~~~~~~vH~~L~~Il~lvP~ 158 (563)
T PF05327_consen 104 AQPKYLSPVLSMLVKNFIPPPSSIAEW-------------------------PGCPPEKRREIYERVHDALQKILRLVPT 158 (563)
T ss_dssp H-GGGHHHHHHHHHHGGGS-HHHHHH----------------------------------------HHHHHHHHHHH-GG
T ss_pred hhHHHHHHHHHHHHHhccCCCcccccc-------------------------chhhhhhhhhhHHHHHHHHHHHHHHcCC
Confidence 777777888888888886642210000 11111 111223689999999999999
Q ss_pred hhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHH
Q 000609 259 ILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVL 324 (1393)
Q Consensus 259 lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v 324 (1393)
....++|.|....=.-..+.+...+ -+-.|+.-.+. ...--..+|..-+.|...++++|.+.|=
T Consensus 159 s~~~L~~~l~~~FP~~~~~~~~~~~-Yv~NlL~l~~Y-~P~L~~~Il~lIi~rLi~iDVeiq~~~d 222 (563)
T PF05327_consen 159 SPSFLIPILVQNFPHKRKSKDEHVN-YVRNLLRLTEY-CPELRSDILSLIIERLIKIDVEIQIELD 222 (563)
T ss_dssp GHHHHHHHHHHTS--TTS-HHHHHH-HHHHHHHHHCC--GGGHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCcCCCCChHHHHH-HHHHHHHHHcc-hHHHHHHHHHHHHHHHHHHhcccccCcc
Confidence 9998888887766555444433322 22223322110 1233346677777777666665555543
No 118
>KOG2051 consensus Nonsense-mediated mRNA decay 2 protein [RNA processing and modification]
Probab=59.50 E-value=52 Score=44.33 Aligned_cols=91 Identities=23% Similarity=0.414 Sum_probs=73.8
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccC-------CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCCh
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLT-------DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIV 317 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~s-------e~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~ 317 (1393)
+-.++..|+.|-|++-..++-+|..+... -+...++..++.+|+|..-.-......+ +....+|.-|.=.+.
T Consensus 481 YsRlVAtl~~~M~dvat~lv~~L~~eFr~~~hkK~q~~ietk~~~VrfIsEL~KF~lv~~~~if-~cLk~ll~dF~~hnI 559 (1128)
T KOG2051|consen 481 YSRLVATLSKCMPDVATELVTMLRKEFRSHLHKKAQINIETKLKIVRFISELCKFQLVPKFEIF-SCLKMLLNDFTHHNI 559 (1128)
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhHHhhhhhCccChHHHH-HHHHHHHHhcccccH
Confidence 45789999999999999999999888753 3788899999999999876422222222 356788888999999
Q ss_pred hHHHHHHHHhHHHHhcCCC
Q 000609 318 AVRMSVLEHVKSCLLTDPS 336 (1393)
Q Consensus 318 ~VR~~~v~~~~~iL~~~p~ 336 (1393)
++=+.+++.++.+|.++|.
T Consensus 560 Em~c~lLE~~GrfLlr~pE 578 (1128)
T KOG2051|consen 560 EMACVLLESCGRFLLRSPE 578 (1128)
T ss_pred HHHHHHHHhcchhhhcChh
Confidence 9999999999999999986
No 119
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=55.96 E-value=3.6e+02 Score=30.77 Aligned_cols=129 Identities=17% Similarity=0.055 Sum_probs=79.1
Q ss_pred HHHHHHHHHHHHhhCCcCccccHHHHHHHHhh------ccccchhhHHHHHHHhhcchHhhhhcccchHHHHHHHHh-hc
Q 000609 625 MQSCMDILGILARFSPLLLGGTEEELVNLLKE------ENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLC-LE 697 (1393)
Q Consensus 625 ~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~------~~~~~~~~~LkiLa~~~k~~~e~~~~~~s~l~~~L~~la-l~ 697 (1393)
...+++++..+-...|..| +..+.++..+.- .+.......+-.++..-..+....|.....+...+..+. ..
T Consensus 55 ~~~~~rLl~~lw~~~~r~f-~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~~g~~ll~~ls~~L~~~ 133 (234)
T PF12530_consen 55 RYVALRLLTLLWKANDRHF-PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPDHGVDLLPLLSGCLNQS 133 (234)
T ss_pred HHHHHHHHHHHHHhCchHH-HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChhhHHHHHHHHHHHHhcc
Confidence 4578899999999999999 444444444111 111111222222222323333333433446777777777 56
Q ss_pred CChHHHHHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHHHHHhhcccc
Q 000609 698 GSRRQAKYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLGCIAQTAMPV 756 (1393)
Q Consensus 698 Gtp~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~~Ia~~ap~v 756 (1393)
..+..+-.|+.+|..+...+ ...+....+-|...+ ..+.-|.++.+|.+++.+.|..
T Consensus 134 ~~~~~~alale~l~~Lc~~~-vvd~~s~w~vl~~~l-~~~~rp~v~~~l~~l~~l~~~~ 190 (234)
T PF12530_consen 134 CDEVAQALALEALAPLCEAE-VVDFYSAWKVLQKKL-SLDYRPLVLKSLCSLFALVPQG 190 (234)
T ss_pred ccHHHHHHHHHHHHHHHHHh-hccHHHHHHHHHHhc-CCccchHHHHHHHHHHHHhccc
Confidence 77888889999999888643 333333455555555 2347788999999999987744
No 120
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=54.45 E-value=51 Score=36.26 Aligned_cols=70 Identities=14% Similarity=0.180 Sum_probs=57.9
Q ss_pred HHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000609 341 PQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 341 ~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~ 411 (1393)
+.-++.+.+...++|..||..|+..+.-+....+-+ |.+.+-++.-..-|....||..|...+..+...|
T Consensus 7 Qryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvn-P~~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 7 QRYLKNILELCLSSDDSVRLAALQVLELILRQGLVN-PKQCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCC-hHHHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 345667777899999999999999999765544432 6777878888889999999999999999999987
No 121
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=54.14 E-value=1.1e+02 Score=39.17 Aligned_cols=122 Identities=16% Similarity=0.160 Sum_probs=64.1
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCccccHHHHHHHHhhccccchhhHHHHHHHhhcchHhhhhc
Q 000609 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAA 682 (1393)
Q Consensus 603 ks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~~~~ 682 (1393)
..|.......+...+++.. .-.-|-.++--..+.||++=...++.+.++++|++..+.-.+++.|-.+++.-++..
T Consensus 19 ~~~~~~y~~il~~~kg~~k--~K~Laaq~I~kffk~FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v-- 94 (556)
T PF05918_consen 19 SQHEEDYKEILDGVKGSPK--EKRLAAQFIPKFFKHFPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHV-- 94 (556)
T ss_dssp GGGHHHHHHHHHGGGS-HH--HHHHHHHHHHHHHCC-GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-H--
T ss_pred ccCHHHHHHHHHHccCCHH--HHHHHHHHHHHHHhhChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHH--
Confidence 3455554444444433321 223345666667778888888888888888888776666667776665555322222
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccchHHHHHHHHH
Q 000609 683 TSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLKSLSVLYKRLV 730 (1393)
Q Consensus 683 ~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~~~~~~~~L~~~L~ 730 (1393)
+.+..+|..+=....+.+....-++|..+.+.+...++..++..|.
T Consensus 95 --~kvaDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~tL~~lf~~i~ 140 (556)
T PF05918_consen 95 --SKVADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKGTLTGLFSQIE 140 (556)
T ss_dssp --HHHHHHHHHHTT---HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 3456666666555666666555555554444333334444444443
No 122
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=54.01 E-value=5.1e+02 Score=31.99 Aligned_cols=228 Identities=18% Similarity=0.194 Sum_probs=121.7
Q ss_pred hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh-cCCCC
Q 000609 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1393)
Q Consensus 300 ~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~v~ 378 (1393)
+|-+-|..-|+-..--+-+=|.+ .++++.+...-|+. +.+-+++-.+..-|-|-.||.+|++.+-.++.-. +.-|.
T Consensus 22 q~v~~y~~il~~~k~~~k~k~la-sq~ip~~fk~fp~l--a~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~ 98 (460)
T KOG2213|consen 22 QHVDDYEGILKAVKGTSKEKRLA-SQFIPRFFKHFPSL--ADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVN 98 (460)
T ss_pred hhHHHHHHHHHHhhcchHHHHHH-HHHHHHHHhhCchh--hhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhH
Confidence 66666666666655555555554 46777766666753 5578888888999999999999887765544431 22222
Q ss_pred HHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCCchhHHHHhhccCcCCC
Q 000609 379 VETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTG 458 (1393)
Q Consensus 379 ~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~vl~e~LlP~~ 458 (1393)
..+.+.|- =-.|+.||...-. .+...-...+..|-++| +|..
T Consensus 99 d~l~qLLn--------------k~sl~~Lf~~~~~--~D~~irek~l~fi~tKl----------------------~~l~ 140 (460)
T KOG2213|consen 99 DVLVQLLN--------------KASLTGLFGQIEV--GDEQIREKVLKFIRTKL----------------------ITLK 140 (460)
T ss_pred HHHHHHHH--------------HHHHHHHHhhhhh--hhHHHHHHHHHHHHHHh----------------------hccc
Confidence 22222221 2234555554311 00000011223333333 3322
Q ss_pred CC--HHHH----HHHHHHHHhcCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHhhhcCC-----CcHHHHHHHHHH
Q 000609 459 FS--VKDR----VRHWVRIFSGFDRIEMKALEKILEQKQRLQ-----QEMQRYLSLRQMHQDG-----DAPEIQKKILFC 522 (1393)
Q Consensus 459 ~~--~~~R----~~~ll~l~~~lD~~~~kal~~il~~k~~l~-----~~~~~~l~l~~~~~~~-----d~~ei~~kl~~~ 522 (1393)
.. .++- +.-.-..+.+.+..++.+|..||..-..++ ..|+++.+--+...+- ..++.-.++-+|
T Consensus 141 ~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisC 220 (460)
T KOG2213|consen 141 GEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAGEARLQELAEEQEGLADLDAFNVSDADYVDRFISC 220 (460)
T ss_pred HHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhhhhccCcccCCChHHHHHHHHH
Confidence 11 0111 222224556777778888888888776665 3455555443322221 234455555555
Q ss_pred HHHHHhhcCCchhHHHHHH---------HHHhhccHHHHHHHHHH--hcCCCCHHHH
Q 000609 523 FRVMSRSFAEPAKAEENFL---------ILDQLKDANVWKILMNL--LDSNTSFDQA 568 (1393)
Q Consensus 523 i~~Ls~~fpDp~Ka~~~L~---------kf~klnD~ri~klLk~~--id~~t~~~t~ 568 (1393)
...-.-+|.-..+....+. .|+++-+.|=..+|+.+ |++.|+.+.+
T Consensus 221 l~~AvPfFargapSskf~~y~n~~~ip~~fdkl~e~rkL~lLK~lAEMss~ttaq~a 277 (460)
T KOG2213|consen 221 LLMAVPFFARGAPSSKFVEYLNKHIIPHHFDKLTEERKLDLLKALAEMSSYTTAQAA 277 (460)
T ss_pred HHHhhhhhhcCCchhHHHHHHHhhhcccccccchHHHHHHHHHHHHHhCccchHHHH
Confidence 5544456655544433332 36667788888889888 4455544433
No 123
>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised.
Probab=53.31 E-value=5.6e+02 Score=32.28 Aligned_cols=166 Identities=11% Similarity=0.169 Sum_probs=97.3
Q ss_pred CCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhcccccccHHHHHHHHH
Q 000609 116 GGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLS 195 (1393)
Q Consensus 116 ~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~ 195 (1393)
+...+.+.+.++.++-+..+..+ .++.+..|-+..+.+.+....+.....-..++..||. ...||.+-+..++.
T Consensus 147 ~~~~l~~ll~~l~nviKfn~~~l-----~e~~i~~lv~~i~~iC~~Ts~~~di~~~L~vldaii~-y~~iP~~sl~~~i~ 220 (464)
T PF11864_consen 147 EESNLSDLLQFLVNVIKFNFNYL-----DEDEISSLVDQICTICKSTSSEDDIEACLSVLDAIIT-YGDIPSESLSPCIE 220 (464)
T ss_pred hhhhHHHHHHHHHHHHhcCCCCC-----CHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHH-cCcCChHHHHHHHH
Confidence 44567777777777776655433 2344555555555554433344444555677777776 67899999988887
Q ss_pred hhcC-----CCcHHHHHHHHHHHHHh-hhhhhHHHHHHHHHhhcCCCCCCCCc---hh--HHHHHHHHHhh----cchh-
Q 000609 196 ALGR-----NKNDTARRLAMNVIEQC-AGKLEAGIKQFLVSSMSGDSRPGHSH---ID--YHEVIYDVYRC----SPQI- 259 (1393)
Q Consensus 196 ~l~~-----~~~~~a~~lA~~vi~~~-~dkl~~~i~q~f~~~l~~d~~~~~~~---~~--~h~Li~eL~~~----~P~l- 259 (1393)
-|-. +-.+++++...++|... ...+=..++.++ .+.+...... ++ .+-+=.-+|.. .|.+
T Consensus 221 vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~~i~~L~~iL----~~~~~~~~~~~~~lRGAv~~l~~ll~~~~~~~~~~l~ 296 (464)
T PF11864_consen 221 VLCSIVNSVSLCKPSWRTMRNLLKSHLGHSAIRTLCDIL----RSPDPQNKRDINVLRGAVFFLRMLLWGSGEQGYPSLP 296 (464)
T ss_pred HHhhHhcccccchhHHHHHHHHHcCccHHHHHHHHHHHH----cccCccccccHHHHhhHHHHHHHHHhccccCCcceec
Confidence 6522 22348889888888532 233334444443 2111111111 11 12222234555 3332
Q ss_pred --hhhhhhhhcccccCCChHHHHHHHHHHHHhhc
Q 000609 260 --LSGVVPYLTGELLTDQLDTRLKAVGLVGDLFA 291 (1393)
Q Consensus 260 --L~~ViP~Le~eL~se~~~~Rl~At~llG~mfs 291 (1393)
+..|+|.+..=|+..++-+=...+.++-++|.
T Consensus 297 ~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll~ 330 (464)
T PF11864_consen 297 FSPSSVLPSLLNALKSNSPRVDYEILLLINRLLD 330 (464)
T ss_pred ccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHHh
Confidence 33599999999998888777788888888883
No 124
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=53.28 E-value=1e+02 Score=36.64 Aligned_cols=54 Identities=22% Similarity=0.322 Sum_probs=44.4
Q ss_pred hHHHHHHHHHhhcchhhh-----hhhhhhcccccC-CChHHHHHHHHHHHHhhc-CCCCCh
Q 000609 244 DYHEVIYDVYRCSPQILS-----GVVPYLTGELLT-DQLDTRLKAVGLVGDLFA-VPGSAN 297 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~-----~ViP~Le~eL~s-e~~~~Rl~At~llG~mfs-~~~~~~ 297 (1393)
+.++||.+|+.++|..+. +.+-+|+.||.. +|+-+|....+++-.+.- .+|..|
T Consensus 190 RVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteLaeteHgref 250 (524)
T KOG4413|consen 190 RVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTELAETEHGREF 250 (524)
T ss_pred HHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHHHHHhhhhhh
Confidence 679999999999999985 468899999996 899999999998877653 344443
No 125
>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]
Probab=52.35 E-value=3.4e+02 Score=36.41 Aligned_cols=139 Identities=21% Similarity=0.222 Sum_probs=102.5
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc-CCCCCC
Q 000609 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT-DPSRAD 339 (1393)
Q Consensus 261 ~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~-~p~~~~ 339 (1393)
+.|+|.+.+-+.-|...+|..|++.++.++..-..+. ..+......++.-..|.+..||-...+....+-.. -|+. .
T Consensus 275 s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~~~~-d~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~~~-~ 352 (759)
T KOG0211|consen 275 SEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLDDDD-DVVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGPSA-T 352 (759)
T ss_pred hhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcCCch-hhhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcccc-C
Confidence 3466777776677789999999999998887644332 77788889999999999999998877776553321 1222 1
Q ss_pred hHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhc----CCCCH-HHHHHHHHhhccCChhHHHHHH
Q 000609 340 APQILTALCDRLLDFDENVRKQVVAVICDVACHAL----NSIPV-ETVKLVAERLRDKSVLVKRYTM 401 (1393)
Q Consensus 340 ~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l----~~v~~-e~L~~l~eR~rDKK~~VR~eAm 401 (1393)
..+....+..-+.|..+.||.++..-+..+++..- -.++. .++-.+-.-+-|....||....
T Consensus 353 ~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a 419 (759)
T KOG0211|consen 353 RTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALA 419 (759)
T ss_pred cccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHh
Confidence 23677888889999999999998888887776321 23333 3457788888999999887643
No 126
>KOG0212 consensus Uncharacterized conserved protein [Function unknown]
Probab=51.35 E-value=6.6e+02 Score=32.47 Aligned_cols=283 Identities=14% Similarity=0.154 Sum_probs=170.0
Q ss_pred CChhhHH-HHHHHHHhhhhhhhcccCC-chHHHHHHHHHHHHhhcCCChh-hHHHHHHHHHHHHhcccccccHHHHHHHH
Q 000609 118 PSFGRRV-VILETLAKYRSCVVMLDLE-CDELVNEMYSTFFAVASDDHPE-SVLSSMQTIMIVLLEESEDIQEDLLVILL 194 (1393)
Q Consensus 118 p~f~~~~-~lLe~La~vks~vl~~DL~-~~~Li~~lF~~ff~~v~~~~~~-~v~~~m~~IL~~vI~Ese~vp~~vLd~IL 194 (1393)
..|.++. ..||-=--||-++.-.|.+ -+.+|.++-..|--.-..++.+ .+.......+..-++.. ..-..++-+++
T Consensus 12 KlYekRKaaalelEk~Vk~l~~~~~~~~i~k~I~~L~~d~a~s~~~n~rkGgLiGlAA~~iaLg~~~~-~Y~~~iv~Pv~ 90 (675)
T KOG0212|consen 12 KLYEKRKAAALELEKLVKDLVNNNDYDQIRKVISELAGDYAYSPHANMRKGGLIGLAAVAIALGIKDA-GYLEKIVPPVL 90 (675)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCcHHHHHHHHHHHHHHhccCcccccccchHHHHHHHHHHhccccH-HHHHHhhHHHH
Confidence 4455543 2222222344555544444 2456666666654322222222 12222222222222222 24566777788
Q ss_pred HhhcCCCcH-------HHHHHHHHHHHHhhhhhhHHHHHHHHHhh------cCCCCCCCCchhHHHHHHHHHhh-----c
Q 000609 195 SALGRNKND-------TARRLAMNVIEQCAGKLEAGIKQFLVSSM------SGDSRPGHSHIDYHEVIYDVYRC-----S 256 (1393)
Q Consensus 195 ~~l~~~~~~-------~a~~lA~~vi~~~~dkl~~~i~q~f~~~l------~~d~~~~~~~~~~h~Li~eL~~~-----~ 256 (1393)
..|...... +.|++|+- |- ..+-.||+++. ..|+.. .....-+++-.|.+- +
T Consensus 91 ~cf~D~d~~vRyyACEsLYNiaKv----~k----~~v~~~Fn~iFdvL~klsaDsd~--~V~~~aeLLdRLikdIVte~~ 160 (675)
T KOG0212|consen 91 NCFSDQDSQVRYYACESLYNIAKV----AK----GEVLVYFNEIFDVLCKLSADSDQ--NVRGGAELLDRLIKDIVTESA 160 (675)
T ss_pred HhccCccceeeeHhHHHHHHHHHH----hc----cCcccchHHHHHHHHHHhcCCcc--ccccHHHHHHHHHHHhccccc
Confidence 888654322 55666652 22 22334555542 223211 111222333333221 2
Q ss_pred -chhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh---
Q 000609 257 -PQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL--- 332 (1393)
Q Consensus 257 -P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~--- 332 (1393)
-=-|...||.|.+-+-.-++..|.-.+.-+--+.+.|+.++..--|+++.-.++=..|-+.+||..+=.+..++|.
T Consensus 161 ~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~eI~ 240 (675)
T KOG0212|consen 161 STFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPDLEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLAEIR 240 (675)
T ss_pred cccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCcHHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHHh
Confidence 2236779999999999999999999999999999999999998889999999999999999999877776666664
Q ss_pred cCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC---CHHHHHHHHHhhccCCh-hHHHHHHHH---HH
Q 000609 333 TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSV-LVKRYTMER---LA 405 (1393)
Q Consensus 333 ~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v---~~e~L~~l~eR~rDKK~-~VR~eAm~~---La 405 (1393)
+.|+.-+..++++-+...+.-+++..+..|+.-|.++.......+ -..++..+..-+-|+-. .++..|... |.
T Consensus 241 s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~iLpc~s~~e~~~i~~~a~~~n~~l~ 320 (675)
T KOG0212|consen 241 SSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTAILPCLSDTEEMSIKEYAQMVNGLLL 320 (675)
T ss_pred cCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhhcccCCCCCccccHHHHHHHHHHHHH
Confidence 567653456889999999999999999999888887766443322 22345555666777766 466554433 44
Q ss_pred HHHHHh
Q 000609 406 DIFRGC 411 (1393)
Q Consensus 406 ~lY~~~ 411 (1393)
++...+
T Consensus 321 ~l~s~~ 326 (675)
T KOG0212|consen 321 KLVSSE 326 (675)
T ss_pred HHHhhh
Confidence 444443
No 127
>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms. Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.
Probab=50.49 E-value=1.8e+02 Score=37.42 Aligned_cols=81 Identities=14% Similarity=0.169 Sum_probs=51.0
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCC
Q 000609 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLD 353 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D 353 (1393)
.+.....+|-+.+.+-|.. |..--...+++.+.=..|-++.||+..++..+.+-..+|. ..+-|.+.|...|.
T Consensus 34 g~~k~K~Laaq~I~kffk~----FP~l~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~--~v~kvaDvL~QlL~- 106 (556)
T PF05918_consen 34 GSPKEKRLAAQFIPKFFKH----FPDLQEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPE--HVSKVADVLVQLLQ- 106 (556)
T ss_dssp S-HHHHHHHHHHHHHHHCC-----GGGHHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T---HHHHHHHHHHHTT-
T ss_pred CCHHHHHHHHHHHHHHHhh----ChhhHHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHH--HHhHHHHHHHHHHh-
Confidence 3566777888888888864 5555557788888888888888888888888887666664 35667777777666
Q ss_pred chhHHHHH
Q 000609 354 FDENVRKQ 361 (1393)
Q Consensus 354 ~DekVR~a 361 (1393)
+||.+=..
T Consensus 107 tdd~~E~~ 114 (556)
T PF05918_consen 107 TDDPVELD 114 (556)
T ss_dssp ---HHHHH
T ss_pred cccHHHHH
Confidence 55544443
No 128
>KOG1992 consensus Nuclear export receptor CSE1/CAS (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=50.45 E-value=7.9e+02 Score=33.15 Aligned_cols=117 Identities=17% Similarity=0.311 Sum_probs=70.5
Q ss_pred CCCCCCChhhHHHHHHHHHhhhhhhhcccCC-c--hHHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhccccc-ccHH
Q 000609 113 KDTGGPSFGRRVVILETLAKYRSCVVMLDLE-C--DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-IQED 188 (1393)
Q Consensus 113 ~d~~~p~f~~~~~lLe~La~vks~vl~~DL~-~--~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~Ese~-vp~~ 188 (1393)
.+|++|-| ++|+.|+++-+ +.-.|+-. + ..+...||=.|-.+-+.| -.....+...||+.+++-+.. +|++
T Consensus 603 KNPs~P~f--nHYLFEsi~~l--i~~t~~~~~~~vs~~e~aL~p~fq~Il~eD-I~EfiPYvfQlla~lve~~~~~ip~~ 677 (960)
T KOG1992|consen 603 KNPSNPQF--NHYLFESIGLL--IRKTCKANPSAVSSLEEALFPVFQTILSED-IQEFIPYVFQLLAVLVEHSSGTIPDS 677 (960)
T ss_pred cCCCCchh--HHHHHHHHHHH--HHHHhccCchHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhcCCCCchh
Confidence 46677754 47899998753 33345544 1 346666664444443322 335667788999999999876 8887
Q ss_pred HHHHHHHhhcCC---CcH---HHHHHHHHHHHHhhhhhh-----HHHHHHHHHhhcC
Q 000609 189 LLVILLSALGRN---KND---TARRLAMNVIEQCAGKLE-----AGIKQFLVSSMSG 234 (1393)
Q Consensus 189 vLd~IL~~l~~~---~~~---~a~~lA~~vi~~~~dkl~-----~~i~q~f~~~l~~ 234 (1393)
...++.-.+.++ +++ +.-+|-...+...+...+ .+|-.+|.-++.+
T Consensus 678 ~~~l~~~lLsp~lW~r~gNipalvrLl~aflk~g~~~~~~~~~l~~iLGifqkLiaS 734 (960)
T KOG1992|consen 678 YSPLFPPLLSPNLWKRSGNIPALVRLLQAFLKTGSQIVEAADKLSGILGIFQKLIAS 734 (960)
T ss_pred HHHHHHHhcCHHHHhhcCCcHHHHHHHHHHHhcCchhhcccccchhHHHHHHHHhcC
Confidence 665544444332 222 556777777776665443 3455667666654
No 129
>PF09465 LBR_tudor: Lamin-B receptor of TUDOR domain; InterPro: IPR019023 The Lamin-B receptor is a chromatin and lamin binding protein in the inner nuclear membrane. It is one of the integral inner nuclear envelope membrane proteins responsible for targeting nuclear membranes to chromatin, being a downstream effector of Ran, a small Ras-like nuclear GTPase which regulates NE assembly. Lamin-B receptor interacts with importin beta, a Ran-binding protein, thereby directly contributing to the fusion of membrane vesicles and the formation of the nuclear envelope []. ; PDB: 2L8D_A 2DIG_A.
Probab=49.81 E-value=9.1 Score=33.87 Aligned_cols=13 Identities=38% Similarity=0.726 Sum_probs=9.6
Q ss_pred ccceeEeeccCCC
Q 000609 1380 IGYRIKVWWPMDK 1392 (1393)
Q Consensus 1380 ~~~~~~~~~~~~~ 1392 (1393)
+|-++.+|||.+.
T Consensus 8 ~Ge~V~~rWP~s~ 20 (55)
T PF09465_consen 8 IGEVVMVRWPGSS 20 (55)
T ss_dssp SS-EEEEE-TTTS
T ss_pred CCCEEEEECCCCC
Confidence 6899999999874
No 130
>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []. The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].
Probab=48.80 E-value=2.3e+02 Score=33.87 Aligned_cols=150 Identities=17% Similarity=0.187 Sum_probs=92.8
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcC--CCCChhhhcHHHHHHHHhcccCCC--hhHHHHHHHHhHHHHhcC-CCC
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAV--PGSANNEQFHSVFSEFLKRLTDRI--VAVRMSVLEHVKSCLLTD-PSR 337 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~--~~~~~~~~~~~~w~~fL~R~~D~s--~~VR~~~v~~~~~iL~~~-p~~ 337 (1393)
++.+++.-++......+.+|.+++|-+.-. +|.+-..-|..+...+..-..|.+ +.+|..++.+.+-+..-. .+.
T Consensus 87 L~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~ 166 (309)
T PF05004_consen 87 LLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEIFEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDE 166 (309)
T ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCCh
Confidence 344555666767778889999999977544 345555666666665555556655 578999988776543321 122
Q ss_pred CChHHHHHHHHHH----hC--Cc---------hhHHHHHHHHHHHHhhhhhc----CCCCHHHHHHHHHhhccCChhHHH
Q 000609 338 ADAPQILTALCDR----LL--DF---------DENVRKQVVAVICDVACHAL----NSIPVETVKLVAERLRDKSVLVKR 398 (1393)
Q Consensus 338 ~~~~ei~~~L~~r----L~--D~---------DekVR~aaV~ai~~la~~~l----~~v~~e~L~~l~eR~rDKK~~VR~ 398 (1393)
++..++++.|..- .. |. +..|..+|+.+.+=+..... ...-.+.+..+.+.+--....||.
T Consensus 167 ~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l~~aAL~aW~lLlt~~~~~~~~~~~~~~~~~l~~lL~s~d~~VRi 246 (309)
T PF05004_consen 167 EETEELMESLESIFLLSILKSDGNAPVVAAEDDAALVAAALSAWALLLTTLPDSKLEDLLEEALPALSELLDSDDVDVRI 246 (309)
T ss_pred hHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhcCCCHHHHH
Confidence 3333333444411 11 21 35688888888776653221 111223355667777777889999
Q ss_pred HHHHHHHHHHHHhh
Q 000609 399 YTMERLADIFRGCC 412 (1393)
Q Consensus 399 eAm~~La~lY~~~~ 412 (1393)
.|=+.+|-+|-..+
T Consensus 247 AAGEaiAll~E~~~ 260 (309)
T PF05004_consen 247 AAGEAIALLYELAR 260 (309)
T ss_pred HHHHHHHHHHHHhh
Confidence 99999999999865
No 131
>PF13251 DUF4042: Domain of unknown function (DUF4042)
Probab=48.78 E-value=1.2e+02 Score=33.44 Aligned_cols=98 Identities=14% Similarity=0.149 Sum_probs=72.0
Q ss_pred ccCCChHHHHHHHHHHHHhhcCCCC-------------Ch-----------hhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 000609 271 LLTDQLDTRLKAVGLVGDLFAVPGS-------------AN-----------NEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1393)
Q Consensus 271 L~se~~~~Rl~At~llG~mfs~~~~-------------~~-----------~~~~~~~w~~fL~R~~D~s~~VR~~~v~~ 326 (1393)
|...+..+|..|..++.-|+.+... +| .+-|..+.... -...++.+=.+.+++
T Consensus 49 l~Dp~~kvR~aA~~~l~~lL~gsk~~L~~Ae~~~~~~~sFtslS~tLa~~i~~lH~~Ll~~L---~~E~~~~~l~q~lK~ 125 (182)
T PF13251_consen 49 LKDPSPKVRAAAASALAALLEGSKPFLAQAEESKGPSGSFTSLSSTLASMIMELHRGLLLAL---QAEKSPPVLTQLLKC 125 (182)
T ss_pred HcCCchhHHHHHHHHHHHHHHccHHHHHHHHhcCCCCCCcccHHHHHHHHHHHHHHHHHHHH---hcccccHHHHHHHHH
Confidence 4567899999999999999987521 11 23444444333 245567788899999
Q ss_pred hHHHHhcCCCC----CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh
Q 000609 327 VKSCLLTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVAC 371 (1393)
Q Consensus 327 ~~~iL~~~p~~----~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~ 371 (1393)
....+.+.|+. +..++++..+..++...|..||.++.-+++.+..
T Consensus 126 la~Lv~~tPY~rL~~~ll~~~v~~v~~~l~~~d~~v~v~~l~~~~~l~s 174 (182)
T PF13251_consen 126 LAVLVQATPYHRLPPGLLTEVVTQVRPLLRHRDPNVRVAALSCLGALLS 174 (182)
T ss_pred HHHHHccCChhhcCHhHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence 98888888863 4456777888999999999999998888876543
No 132
>KOG2213 consensus Apoptosis inhibitor 5/fibroblast growth factor 2-interacting factor 2, and related proteins [Signal transduction mechanisms]
Probab=48.26 E-value=6.2e+02 Score=31.30 Aligned_cols=252 Identities=16% Similarity=0.181 Sum_probs=124.4
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC--CChHHHH------
Q 000609 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR--ADAPQIL------ 344 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~-p~~--~~~~ei~------ 344 (1393)
.......+|.+++++.|.. |..--.+.+.+.+.-+.|-++.||.+.++-.+.+-.-. .++ +...+++
T Consensus 36 ~~~k~k~lasq~ip~~fk~----fp~la~~a~da~~d~~ed~d~~ir~qaik~lp~fc~~d~~~rv~d~l~qLLnk~sl~ 111 (460)
T KOG2213|consen 36 GTSKEKRLASQFIPRFFKH----FPSLADEAIDAQLDLCEDDDVGIRRQAIKGLPLFCKGDALSRVNDVLVQLLNKASLT 111 (460)
T ss_pred cchHHHHHHHHHHHHHHhh----CchhhhHHHHhhhccccccchhhHHHHHhccchhccCchhhhhHHHHHHHHHHHHHH
Confidence 4556677899999999975 33333468999999999999999999998877533210 000 0011111
Q ss_pred HHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHH-HHHHhhcc--CC--hhHHHHHHHHHHHHHHHhhh------
Q 000609 345 TALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVK-LVAERLRD--KS--VLVKRYTMERLADIFRGCCL------ 413 (1393)
Q Consensus 345 ~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~-~l~eR~rD--KK--~~VR~eAm~~La~lY~~~~~------ 413 (1393)
.-+..-.. .||.+|..+.+-|.+= +-.+++++|. .+-+-+-| || ..|=.+-...+.++-...-.
T Consensus 112 ~Lf~~~~~-~D~~irek~l~fi~tK----l~~l~~e~L~kevE~~iv~eikkal~dVtgeef~lfm~~L~~lk~~~~k~~ 186 (460)
T KOG2213|consen 112 GLFGQIEV-GDEQIREKVLKFIRTK----LITLKGEVLTKEVERHIVDEIKKALEDVTGEEFTLFMDILASLKSLQTKAG 186 (460)
T ss_pred HHHhhhhh-hhHHHHHHHHHHHHHH----hhcccHHHhhhHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhcccCCCC
Confidence 12222234 6999999887776542 2223333331 00000000 00 11222222222222221100
Q ss_pred -----h---ccCCCcchhcccc----chHHHhhhh------cccCCC-chhHHHHhhccCcCCCC--CHHHHHHHHHHHH
Q 000609 414 -----R---NFNGSINQNEFEW----IPGKILRCL------YDKDFG-SDTIESVLCGSLFPTGF--SVKDRVRHWVRIF 472 (1393)
Q Consensus 414 -----~---~~~~~~~~~~~~w----IP~~IL~~~------Y~~d~~-~~lvE~vl~e~LlP~~~--~~~~R~~~ll~l~ 472 (1393)
+ ..++....+.|.- -=+++++|. |..... ...|+. +++.++|..+ .+++|--.++..+
T Consensus 187 ~a~lqeLa~~~e~~a~ldaf~~sD~d~VdRfisCl~~AvPfFargapSskf~~y-~n~~~ip~~fdkl~e~rkL~lLK~l 265 (460)
T KOG2213|consen 187 EARLQELAEEQEGLADLDAFNVSDADYVDRFISCLLMAVPFFARGAPSSKFVEY-LNKHIIPHHFDKLTEERKLDLLKAL 265 (460)
T ss_pred HHHHHHHHHHHhhhhccCcccCCChHHHHHHHHHHHHhhhhhhcCCchhHHHHH-HHhhhcccccccchHHHHHHHHHHH
Confidence 0 0001111111110 013344442 222221 235555 5778888744 4577877777666
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC--CCcHHH----HHHHHHHHHHHHhhcCCchhHHHHHHHHH
Q 000609 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQD--GDAPEI----QKKILFCFRVMSRSFAEPAKAEENFLILD 544 (1393)
Q Consensus 473 ~~lD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~--~d~~ei----~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~ 544 (1393)
..+.... .. +..++-+...+++..+|.. ...++. ...+....++++...||.+++..+-+++.
T Consensus 266 AEMss~t-----ta----q~a~q~Lpsi~elLk~yMpa~kt~ee~~fsyvEClly~~h~Lg~k~pn~t~ak~d~K~L~ 334 (460)
T KOG2213|consen 266 AEMSSYT-----TA----QAARQMLPSIVELLKEYMPAPKTGEEMQFSYVECLLYALHHLGHKKPNFTNAKCDAKKLK 334 (460)
T ss_pred HHhCccc-----hH----HHHHHHHHHHHHHHHHhcccCCccHHHHHHHHHHHHHHHHHHhhcCcchhhhhcchhhhc
Confidence 6554432 11 1122223333444333221 123333 33556667888888999999987766665
No 133
>PF05804 KAP: Kinesin-associated protein (KAP)
Probab=46.00 E-value=8.9e+02 Score=32.45 Aligned_cols=169 Identities=20% Similarity=0.186 Sum_probs=83.8
Q ss_pred HHHhhccHHHHHHHHHHhcCCCCHHHH-HHHHHHHHHHhcCCCC---hHHHHHHHHHhhhc------cccchhHHHHHHH
Q 000609 542 ILDQLKDANVWKILMNLLDSNTSFDQA-FTGRDDLLKILGAKHR---LYDFLSTLSMKCSY------LLFNKEHVKEILL 611 (1393)
Q Consensus 542 kf~klnD~ri~klLk~~id~~t~~~t~-~~a~~ELlkrL~~~~~---~~e~l~~Ll~R~S~------li~Nks~V~~LL~ 611 (1393)
+-.+.+|+=++|+|+++...+...++. .....+|++.+..... ..+.+-+|-.-..+ ++-+-.-||.|.+
T Consensus 461 ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~ld~~~ll~~~~llp~L~~ 540 (708)
T PF05804_consen 461 RALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDLDWAQLLQEYNLLPWLKD 540 (708)
T ss_pred HHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCcCHHHHHHhCCHHHHHHH
Confidence 333568999999999998876444433 3445566666655422 34444444332211 2223455666666
Q ss_pred HHHhhcccchhhhHHHHHHHHHHHHhh--CCcCc--cccHHHHHHHHhhccccchhhHHHHHHHhhcchHhh-----hhc
Q 000609 612 EVAAQKSSANAQFMQSCMDILGILARF--SPLLL--GGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQ-----LAA 682 (1393)
Q Consensus 612 ~~~~~~~~~~~~~~~~a~eLL~~IS~~--~P~lF--k~~~~~L~~lL~~~~~~~~~~~LkiLa~~~k~~~e~-----~~~ 682 (1393)
.+... ...+ ...-.+.-++..+|.. +-.++ .+.+..|+++|....+ --+-++|+++-+...+... +-
T Consensus 541 ~L~~g-~~~d-Dl~LE~Vi~~gtla~d~~~A~lL~~sgli~~Li~LL~~kqe-DdE~VlQil~~f~~ll~h~~tr~~ll- 616 (708)
T PF05804_consen 541 LLKPG-ASED-DLLLEVVILLGTLASDPECAPLLAKSGLIPTLIELLNAKQE-DDEIVLQILYVFYQLLFHEETREVLL- 616 (708)
T ss_pred HhCCC-CCCh-HHHHHHHHHHHHHHCCHHHHHHHHhCChHHHHHHHHHhhCc-hHHHHHHHHHHHHHHHcChHHHHHHH-
Confidence 55321 1111 1111122222222211 11122 1457899999987543 2457889998776543321 11
Q ss_pred ccchHHHHHHHHhhcCChHHHHHHHHHHHhhc
Q 000609 683 TSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1393)
Q Consensus 683 ~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~ 714 (1393)
.......-|-++.-..++..+|.|=.+|-.+.
T Consensus 617 ~~~~~~~ylidL~~d~N~~ir~~~d~~Ldii~ 648 (708)
T PF05804_consen 617 KETEIPAYLIDLMHDKNAEIRKVCDNALDIIA 648 (708)
T ss_pred hccchHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence 01223333434444445555555555555444
No 134
>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]
Probab=45.32 E-value=1.6e+02 Score=37.45 Aligned_cols=168 Identities=17% Similarity=0.160 Sum_probs=103.7
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcCCC---CChhhhc--HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---C
Q 000609 267 LTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQF--HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---A 338 (1393)
Q Consensus 267 Le~eL~se~~~~Rl~At~llG~mfs~~~---~~~~~~~--~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~---~ 338 (1393)
+-..+.+++.+.++.|+..+-+++|... .+.+-.. =+.+-.||+| |..+.+|.+..=+..+|-.-.... -
T Consensus 71 ~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~--~~~~~lq~eAAWaLTnIAsgtse~T~~v 148 (514)
T KOG0166|consen 71 MLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSR--DDNPTLQFEAAWALTNIASGTSEQTKVV 148 (514)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHcc--CCChhHHHHHHHHHHHHhcCchhhcccc
Confidence 3344668999999999999999999753 1222111 2456677774 445677766666666655432211 0
Q ss_pred ChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCC----CCHHHHHHHHHhh-ccCChhHHHHHHHHHHHHHHHhhh
Q 000609 339 DAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS----IPVETVKLVAERL-RDKSVLVKRYTMERLADIFRGCCL 413 (1393)
Q Consensus 339 ~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~----v~~e~L~~l~eR~-rDKK~~VR~eAm~~La~lY~~~~~ 413 (1393)
.....+..|...|..+++.||-+||-+++.+|-.+... +.-..+..|..-+ .+.+....+.++=+|.++.+.-
T Consensus 149 v~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk-- 226 (514)
T KOG0166|consen 149 VDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGK-- 226 (514)
T ss_pred ccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCC--
Confidence 11134567889999999999999999999998755331 2223333333332 2333466677777777776641
Q ss_pred hccCCCcchhccccchHHHhhhhcccCC
Q 000609 414 RNFNGSINQNEFEWIPGKILRCLYDKDF 441 (1393)
Q Consensus 414 ~~~~~~~~~~~~~wIP~~IL~~~Y~~d~ 441 (1393)
+.+.....+.-|=..|+.+.|..|.
T Consensus 227 ---~P~P~~~~v~~iLp~L~~ll~~~D~ 251 (514)
T KOG0166|consen 227 ---NPSPPFDVVAPILPALLRLLHSTDE 251 (514)
T ss_pred ---CCCCcHHHHHHHHHHHHHHHhcCCH
Confidence 1223335566666677777776663
No 135
>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=44.36 E-value=96 Score=40.34 Aligned_cols=100 Identities=22% Similarity=0.241 Sum_probs=76.9
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 000609 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~ 334 (1393)
.|+++...+-+|-.-|.+-+..+|-+|.+.+.+|.+.. ..+..+.|.++--.-|+ .+++++||...|+.. -.-
T Consensus 323 e~~ll~~~~~~Lg~fls~rE~NiRYLaLEsm~~L~ss~~s~davK~h~d~Ii~sLk--terDvSirrravDLL----Y~m 396 (938)
T KOG1077|consen 323 EPELLSRAVNQLGQFLSHRETNIRYLALESMCKLASSEFSIDAVKKHQDTIINSLK--TERDVSIRRRAVDLL----YAM 396 (938)
T ss_pred cHHHHHHHHHHHHHHhhcccccchhhhHHHHHHHHhccchHHHHHHHHHHHHHHhc--cccchHHHHHHHHHH----HHH
Confidence 78999999999999999999999999999999999874 34567788777655554 467778888877764 334
Q ss_pred CCCCChHHHHHHHHHHhCCchhHHHHH
Q 000609 335 PSRADAPQILTALCDRLLDFDENVRKQ 361 (1393)
Q Consensus 335 p~~~~~~ei~~~L~~rL~D~DekVR~a 361 (1393)
.+++.+.+|+..|..-|--.|-.+|-+
T Consensus 397 cD~~Nak~IV~elLqYL~tAd~siree 423 (938)
T KOG1077|consen 397 CDVSNAKQIVAELLQYLETADYSIREE 423 (938)
T ss_pred hchhhHHHHHHHHHHHHhhcchHHHHH
Confidence 455567788888877776666666655
No 136
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=42.38 E-value=1.2e+02 Score=39.76 Aligned_cols=122 Identities=19% Similarity=0.209 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhH
Q 000609 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDEN 357 (1393)
Q Consensus 278 ~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~Dek 357 (1393)
.|=+|+-+---||+..+ ...++-++.+ .|++|-+|..=+=...-...-. +. ..-|-.-|.--..|.++.
T Consensus 502 ~RGl~vGiaL~~ygrqe-----~Ad~lI~el~---~dkdpilR~~Gm~t~alAy~GT--gn-nkair~lLh~aVsD~nDD 570 (929)
T KOG2062|consen 502 IRGLAVGIALVVYGRQE-----DADPLIKELL---RDKDPILRYGGMYTLALAYVGT--GN-NKAIRRLLHVAVSDVNDD 570 (929)
T ss_pred HHHHHHhHHHHHhhhhh-----hhHHHHHHHh---cCCchhhhhhhHHHHHHHHhcc--Cc-hhhHHHhhcccccccchH
Confidence 45555555545555433 2223333333 4666777654332222111111 00 122333344445677777
Q ss_pred HHHHHHHHHHHhhhhhcCCCCH-------------------------------HHHHHHHHhhccCChhHHHHHHHHHHH
Q 000609 358 VRKQVVAVICDVACHALNSIPV-------------------------------ETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 358 VR~aaV~ai~~la~~~l~~v~~-------------------------------e~L~~l~eR~rDKK~~VR~eAm~~La~ 406 (1393)
||.+||.+++-+.+.+++.+|. +.+..|--.+.|+.-=||+-||-.+|-
T Consensus 571 VrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eAi~lLepl~~D~~~fVRQgAlIa~am 650 (929)
T KOG2062|consen 571 VRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEAINLLEPLTSDPVDFVRQGALIALAM 650 (929)
T ss_pred HHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHHHHHHhhhhcChHHHHHHHHHHHHHH
Confidence 7777777776555555443322 223344444556666666666666665
Q ss_pred HHHH
Q 000609 407 IFRG 410 (1393)
Q Consensus 407 lY~~ 410 (1393)
+--.
T Consensus 651 Im~Q 654 (929)
T KOG2062|consen 651 IMIQ 654 (929)
T ss_pred HHHh
Confidence 5443
No 137
>PF04118 Dopey_N: Dopey, N-terminal; InterPro: IPR007249 DopA is the founding member of the Dopey family and is required for correct cell morphology and spatiotemporal organisation of multicellular structures in the filamentous fungus Emericella nidulans (Aspergillus nidulans). DopA homologues are found in mammals. Saccharomyces cerevisiae DOP1 is essential for viability and, affects cellular morphogenesis [].
Probab=42.33 E-value=2e+02 Score=34.31 Aligned_cols=107 Identities=17% Similarity=0.217 Sum_probs=72.5
Q ss_pred HHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHH
Q 000609 251 DVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSC 330 (1393)
Q Consensus 251 eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~i 330 (1393)
.|.-+.+.++.+++|-||+| +.+.=..+.+++-.+-..-+.+ --|..+|.+.+ .+|++|...+.++..-
T Consensus 131 ~L~p~l~~li~slLpGLede----~sE~~~~~~~ll~~l~~~v~~~--~F~~~lwl~ii-----~sp~~Rl~al~~l~~~ 199 (307)
T PF04118_consen 131 ALRPCLKGLILSLLPGLEDE----GSEFFDRTLKLLDKLKEAVGDK--YFWQCLWLCII-----TSPSRRLGALNYLLRR 199 (307)
T ss_pred HHHHHHHHHHHHhccccccC----CchHHHHHHHHHHHHHHhcChh--HHHHHHHHHHh-----cCcchhHHHHHHHHHh
Confidence 56677888999999999985 3333334445555444332222 34578888888 6899999988887664
Q ss_pred HhcCC------C--------CCChHHHHHHHHHHhCCchhHHHHHHHHHHHH
Q 000609 331 LLTDP------S--------RADAPQILTALCDRLLDFDENVRKQVVAVICD 368 (1393)
Q Consensus 331 L~~~p------~--------~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~ 368 (1393)
+-... . ..+..-++.+++..|.|.+.-|++.+..-+..
T Consensus 200 l~~~~~~~~~~~~~~~~~~~~~~~~Llv~al~~~L~D~~iLVqR~~LDlLl~ 251 (307)
T PF04118_consen 200 LPKFQNDELSLSSEEQEYCLGPDPGLLVRALCACLEDENILVQRGFLDLLLS 251 (307)
T ss_pred CCcccccccccchHHHHHhcCCCccHHHHHHHHHhCCchHHHHHHHHHHHHH
Confidence 43211 0 12234577999999999999999997777664
No 138
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=42.18 E-value=7.1e+02 Score=30.22 Aligned_cols=88 Identities=15% Similarity=0.213 Sum_probs=58.0
Q ss_pred hhcccccCCChHHHHHHHHHHHHhhcCCC-CChhhhc---HHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC-Ch
Q 000609 266 YLTGELLTDQLDTRLKAVGLVGDLFAVPG-SANNEQF---HSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA-DA 340 (1393)
Q Consensus 266 ~Le~eL~se~~~~Rl~At~llG~mfs~~~-~~~~~~~---~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~-~~ 340 (1393)
....-|.++|=-+|..++++||+++..+. .+++..| |+-....+.=..|++..||.+...--+ +..+||... .+
T Consensus 213 ~~~~Ll~s~NYvtkrqslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFK-vFVANp~K~~~I 291 (335)
T PF08569_consen 213 KYNKLLESSNYVTKRQSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFK-VFVANPNKPPPI 291 (335)
T ss_dssp HHHHHCT-SSHHHHHHHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHH-HHHH-SS-BHHH
T ss_pred HHHHHccCCCeEeehhhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHH-HHHhCCCCChHH
Confidence 44555778999999999999999999864 2334444 888888899999999999999876544 555667532 11
Q ss_pred H--------HHHHHHHHHhCCc
Q 000609 341 P--------QILTALCDRLLDF 354 (1393)
Q Consensus 341 ~--------ei~~~L~~rL~D~ 354 (1393)
. .+++.|.+-..|.
T Consensus 292 ~~iL~~Nr~kLl~fl~~f~~~~ 313 (335)
T PF08569_consen 292 VDILIKNREKLLRFLKDFHTDR 313 (335)
T ss_dssp HHHHHHTHHHHHHHHHTTTTT-
T ss_pred HHHHHHHHHHHHHHHHhCCCCC
Confidence 1 3335555555665
No 139
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=42.01 E-value=56 Score=39.97 Aligned_cols=112 Identities=16% Similarity=0.181 Sum_probs=77.4
Q ss_pred hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHH-HHHHHhcccCCCh---hHHHHHHHHhHHHHhcCCCC-
Q 000609 263 VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSV-FSEFLKRLTDRIV---AVRMSVLEHVKSCLLTDPSR- 337 (1393)
Q Consensus 263 ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~-w~~fL~R~~D~s~---~VR~~~v~~~~~iL~~~p~~- 337 (1393)
.++.+..-|.+++.++|..|-+.+--+++++. +.+..-.+ -..|+-|.-|++- .=|.+.++.+..++.-....
T Consensus 26 ~~~~i~~~lL~~~~~vraa~yRilRy~i~d~~--~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~ 103 (371)
T PF14664_consen 26 FGERIQCMLLSDSKEVRAAGYRILRYLISDEE--SLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPK 103 (371)
T ss_pred HHHHHHHHHCCCcHHHHHHHHHHHHHHHcCHH--HHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcc
Confidence 34444445667889999999999999999863 22222111 2245666666543 34888888888887652211
Q ss_pred CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCC
Q 000609 338 ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS 376 (1393)
Q Consensus 338 ~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~ 376 (1393)
..-.-++.++....-++||+.|..+++++|+++..++..
T Consensus 104 ~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P~l 142 (371)
T PF14664_consen 104 EIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNPEL 142 (371)
T ss_pred cCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCHHH
Confidence 122467788888888899999999999999999877664
No 140
>KOG2956 consensus CLIP-associating protein [General function prediction only]
Probab=40.90 E-value=6.2e+02 Score=32.01 Aligned_cols=163 Identities=12% Similarity=0.152 Sum_probs=96.4
Q ss_pred hhhHHHHHHHHHHHHhcccccccH----HHHHHHHHhhcCCCcH----HHHHHHHHHHHHhhhhhhHHH----HHHHHHh
Q 000609 164 PESVLSSMQTIMIVLLEESEDIQE----DLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGI----KQFLVSS 231 (1393)
Q Consensus 164 ~~~v~~~m~~IL~~vI~Ese~vp~----~vLd~IL~~l~~~~~~----~a~~lA~~vi~~~~dkl~~~i----~q~f~~~ 231 (1393)
...-...|..|+.-+-+.+.+|.. ++|..+|+-+...+.. -|.++-..+|.+.+++|..+. +.++-..
T Consensus 301 a~~~k~alsel~~m~~e~sfsvWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Leaa 380 (516)
T KOG2956|consen 301 ASERKEALSELPKMLCEGSFSVWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLEAA 380 (516)
T ss_pred hhHHHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHHHH
Confidence 344566788888888888888988 5555666666654333 666666777777777766543 3333221
Q ss_pred hcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHh
Q 000609 232 MSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLK 310 (1393)
Q Consensus 232 l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~-~~~~~~~~~w~~fL~ 310 (1393)
-... +.......-..+.-+..+.|..=..||-.+ +..+|.+.=.++++.+.+||..-.. .+...-|++-=.++.
T Consensus 381 ~ds~--~~v~~~Aeed~~~~las~~P~~~I~~i~~~---Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iq 455 (516)
T KOG2956|consen 381 KDSQ--DEVMRVAEEDCLTTLASHLPLQCIVNISPL---ILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQ 455 (516)
T ss_pred hCCc--hhHHHHHHHHHHHHHHhhCchhHHHHHhhH---HhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHH
Confidence 1111 111111223445555566665433333221 3347778888999999999986432 233444555556666
Q ss_pred cccCCChhHHHHHHHHhHHHH
Q 000609 311 RLTDRIVAVRMSVLEHVKSCL 331 (1393)
Q Consensus 311 R~~D~s~~VR~~~v~~~~~iL 331 (1393)
-+.-.+..||..+|=|.-.++
T Consensus 456 ay~S~SS~VRKtaVfCLVamv 476 (516)
T KOG2956|consen 456 AYDSTSSTVRKTAVFCLVAMV 476 (516)
T ss_pred HhcCchHHhhhhHHHhHHHHH
Confidence 677777788877777665544
No 141
>KOG2933 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.56 E-value=1.7e+02 Score=34.90 Aligned_cols=162 Identities=13% Similarity=0.113 Sum_probs=116.3
Q ss_pred hHHHHHHHHHhhcchhhhh----hhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhH
Q 000609 244 DYHEVIYDVYRCSPQILSG----VVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAV 319 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~----ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~V 319 (1393)
+.-..|..|-.+.|+.|.+ ||.++-.+|+.-.-.+=..|+.++++||+.-+..+.+.-..+-...|.|..+-..=|
T Consensus 107 dgLn~irrLs~fh~e~l~~~L~~vii~vvkslKNlRS~VsraA~~t~~difs~ln~~i~~~ld~lv~~Ll~ka~~dnrFv 186 (334)
T KOG2933|consen 107 DGLNSIRRLSEFHPESLNPMLHEVIIAVVKSLKNLRSAVSRAACMTLADIFSSLNNSIDQELDDLVTQLLHKASQDNRFV 186 (334)
T ss_pred hhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHH
Confidence 4556677777777776554 899999999999999999999999999998776667778888889999998888888
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCC------CCHHHHHHHHHhhccCC
Q 000609 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNS------IPVETVKLVAERLRDKS 393 (1393)
Q Consensus 320 R~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~------v~~e~L~~l~eR~rDKK 393 (1393)
|...-++.-.. .+|-. ..-++..|...+.-+-.+||..++..+.... ..+.. ...++...+++-++||=
T Consensus 187 reda~kAL~aM-V~~vt---p~~~L~~L~~~~~~~n~r~r~~a~~~~~~~v-~rl~v~~~~~~~~~dl~~a~~~~~~d~L 261 (334)
T KOG2933|consen 187 REDAEKALVAM-VNHVT---PQKLLRKLIPILQHSNPRVRAKAALCFSRCV-IRLGVLPVLLQGSCDLSRAAQEQGSDKL 261 (334)
T ss_pred HHHHHHHHHHH-HhccC---hHHHHHHHHHHHhhhchhhhhhhhccccccc-eeccccchhhHhHHHHHHHHHhhhcccc
Confidence 88777776553 33322 2357788888888899999988544332110 11111 13345678999999999
Q ss_pred hhHHHHHHHHHHHHHHH
Q 000609 394 VLVKRYTMERLADIFRG 410 (1393)
Q Consensus 394 ~~VR~eAm~~La~lY~~ 410 (1393)
+.+|+.|=-.+..+...
T Consensus 262 p~~~~~a~~~~~~~~~v 278 (334)
T KOG2933|consen 262 PELREAARFVRLELKEV 278 (334)
T ss_pred cccccchhHHHHhHHHH
Confidence 99996554444444443
No 142
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=39.96 E-value=3.4e+02 Score=32.88 Aligned_cols=97 Identities=15% Similarity=0.135 Sum_probs=64.5
Q ss_pred cccCCChHHHHHHHHHHHHhhcCCC-C--Chhh--hcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH-
Q 000609 270 ELLTDQLDTRLKAVGLVGDLFAVPG-S--ANNE--QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI- 343 (1393)
Q Consensus 270 eL~se~~~~Rl~At~llG~mfs~~~-~--~~~~--~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei- 343 (1393)
.|.+.+..+|..|+.+||.++.... + .+.+ .-+.+...+- .|.+..+|.+.+=+....|.+++.+ ..+.
T Consensus 132 ~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll~~ls---~~~~~~~r~kaL~AissLIRn~~~g--~~~fl 206 (342)
T KOG2160|consen 132 YLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLLKILS---SDDPNTVRTKALFAISSLIRNNKPG--QDEFL 206 (342)
T ss_pred HhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHHHHHc---cCCCchHHHHHHHHHHHHHhcCcHH--HHHHH
Confidence 6778999999999999999998642 1 1111 1234444443 6778889999999999988888753 1122
Q ss_pred ----HHHHHHHhCCchhHHHHH--HHHHHHHhhh
Q 000609 344 ----LTALCDRLLDFDENVRKQ--VVAVICDVAC 371 (1393)
Q Consensus 344 ----~~~L~~rL~D~DekVR~a--aV~ai~~la~ 371 (1393)
+..|.+.+...+..||.. |+--|..+..
T Consensus 207 ~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~ 240 (342)
T KOG2160|consen 207 KLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQ 240 (342)
T ss_pred hcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHH
Confidence 357788888855555554 4444444433
No 143
>PF12074 DUF3554: Domain of unknown function (DUF3554); InterPro: IPR022716 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 287 to 356 amino acids in length. This domain is found associated with PF02985 from PFAM.
Probab=39.35 E-value=1.5e+02 Score=35.47 Aligned_cols=87 Identities=18% Similarity=0.221 Sum_probs=66.9
Q ss_pred HHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHh-CCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000609 319 VRMSVLEHVKSCLLTDPSRADAPQILTALCDRL-LDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1393)
Q Consensus 319 VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL-~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR 397 (1393)
=|+.+.+....+ |.......|+++|..-+ .+..|.+..+.+.+++.-....-..+|.+++..+..=+.|||+.||
T Consensus 3 ~r~~~~~~L~~l----~~~~~s~~i~~~l~~~~~KE~nE~aL~~~l~al~~~~~~~~~~~~~~~~~~~~kGl~~kk~~vR 78 (339)
T PF12074_consen 3 QRVLHASMLSSL----PSSSLSSKIVQGLSPLLSKESNEAALSALLSALFKHLFFLSSELPKKVVDAFKKGLKDKKPPVR 78 (339)
T ss_pred HHHHHHHHHHhC----CCcchHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHhCcCCCHHHHHHHHHHhcCCCCcHH
Confidence 355555554432 22235667888887765 4699999999999998643333378899999999999999999999
Q ss_pred HHHHHHHHHHHH
Q 000609 398 RYTMERLADIFR 409 (1393)
Q Consensus 398 ~eAm~~La~lY~ 409 (1393)
+.-+..+|.++.
T Consensus 79 ~~w~~~~~~~~~ 90 (339)
T PF12074_consen 79 RAWLLCLGEALW 90 (339)
T ss_pred HHHHHHHHHHHh
Confidence 999999999877
No 144
>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function.
Probab=38.65 E-value=1.5e+02 Score=34.45 Aligned_cols=135 Identities=14% Similarity=0.150 Sum_probs=73.4
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhC
Q 000609 273 TDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLL 352 (1393)
Q Consensus 273 se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~ 352 (1393)
++|+.++..|+-++|..-+.+...-.-..-..-.-..+-..|.++.||...+.+..++=.+......++.-+..+++...
T Consensus 24 t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en~~~Ik~~i~~Vc~~~~ 103 (254)
T PF04826_consen 24 TEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDENQEQIKMYIPQVCEETV 103 (254)
T ss_pred CCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhhHHHHHHHHHHHHHHHh
Confidence 67899999999999986554421111111122234566778899999987777765422211111122233444555433
Q ss_pred C--chhHHHHHHHHHHHHhhhhh-cCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHH
Q 000609 353 D--FDENVRKQVVAVICDVACHA-LNSIPVETVKLVAERLRDKSVLVKRYTMERLADI 407 (1393)
Q Consensus 353 D--~DekVR~aaV~ai~~la~~~-l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~l 407 (1393)
. .|..|..++.+.+..++... .+.+=...+..+...+.-=...+|..++..|..|
T Consensus 104 s~~lns~~Q~agLrlL~nLtv~~~~~~~l~~~i~~ll~LL~~G~~~~k~~vLk~L~nL 161 (254)
T PF04826_consen 104 SSPLNSEVQLAGLRLLTNLTVTNDYHHMLANYIPDLLSLLSSGSEKTKVQVLKVLVNL 161 (254)
T ss_pred cCCCCCHHHHHHHHHHHccCCCcchhhhHHhhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence 2 36778888888888876432 1111111222222222223456777777766554
No 145
>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments. The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.
Probab=38.03 E-value=9.2e+02 Score=30.33 Aligned_cols=64 Identities=16% Similarity=0.095 Sum_probs=39.6
Q ss_pred CCCcchHHHHHHHHHHHHhhcCCC-CCCChhHH---HHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhh
Q 000609 67 HQDKDVKLLVATCICEITRITAPE-APYSDDVL---KDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYR 134 (1393)
Q Consensus 67 HkD~~Vr~~vAcCLadIlRI~APd-aPytd~~L---kdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vk 134 (1393)
....++..|+-.-+.|+++- .|. +++--+.. .++|.-|+..+. ..+.+-....+++|..+....
T Consensus 65 ~~~~d~vqyvL~Li~dll~~-~~~~~~~f~~~~~~~~~~~~~fl~lL~---~~d~~i~~~a~~iLt~l~~~~ 132 (429)
T cd00256 65 IDKDDTVRYVLTLIDDMLQE-DDTRVKLFHDDALLKKKTWEPFFNLLN---RQDQFIVHMSFSILAKLACFG 132 (429)
T ss_pred cCcHHHHHHHHHHHHHHHHh-chHHHHHHHHHhhccccchHHHHHHHc---CCchhHHHHHHHHHHHHHhcC
Confidence 45677999999999999996 222 11111111 456777776543 345555666777777776543
No 146
>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]
Probab=36.52 E-value=2.6e+02 Score=33.66 Aligned_cols=137 Identities=20% Similarity=0.297 Sum_probs=0.0
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCC-----hhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC-CCC
Q 000609 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSA-----NNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-PSR 337 (1393)
Q Consensus 264 iP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~-----~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~-p~~ 337 (1393)
+|+|...|-+||.+.-+.||--+-+++|...+. +..---+-|-+|+. ++--.|+++-..-..+| .++
T Consensus 73 lp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~-------~~q~~mlqfEAaWalTNiaSG 145 (526)
T COG5064 73 LPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMD-------EIQRDMLQFEAAWALTNIASG 145 (526)
T ss_pred hHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHH-------hcchhHHHHHHHHHHhhhccC
Q ss_pred CChH-------HHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcC---------------------CCCHHHHH----HH
Q 000609 338 ADAP-------QILTALCDRLLDFDENVRKQVVAVICDVACHALN---------------------SIPVETVK----LV 385 (1393)
Q Consensus 338 ~~~~-------ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~---------------------~v~~e~L~----~l 385 (1393)
.-.+ .-++-+...|.+++..||-++|=+++.+|-.+.. .+..++++ +|
T Consensus 146 tt~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtL 225 (526)
T COG5064 146 TTQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTL 225 (526)
T ss_pred cccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHH
Q ss_pred HHhhccCCh----hHHHHHHHHHHHH
Q 000609 386 AERLRDKSV----LVKRYTMERLADI 407 (1393)
Q Consensus 386 ~eR~rDKK~----~VR~eAm~~La~l 407 (1393)
...+|-|++ .+=..|+..|++|
T Consensus 226 SNlcRGknP~P~w~~isqalpiL~KL 251 (526)
T COG5064 226 SNLCRGKNPPPDWSNISQALPILAKL 251 (526)
T ss_pred HHhhCCCCCCCchHHHHHHHHHHHHH
No 147
>KOG2038 consensus CAATT-binding transcription factor/60S ribosomal subunit biogenesis protein [Translation, ribosomal structure and biogenesis; Transcription]
Probab=35.31 E-value=1.3e+03 Score=31.15 Aligned_cols=55 Identities=16% Similarity=0.296 Sum_probs=26.5
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHh
Q 000609 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDV 369 (1393)
Q Consensus 313 ~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~l 369 (1393)
.|.=+.|+..+++.+..+|.+.|. .+..|+..|-.+|-|++-+|-..|.--+..+
T Consensus 314 ~D~L~~vk~raL~ti~~lL~~kPE--qE~~LL~~lVNKlGDpqnKiaskAsylL~~L 368 (988)
T KOG2038|consen 314 KDPLEEVKKRALKTIYDLLTNKPE--QENNLLVLLVNKLGDPQNKIASKASYLLEGL 368 (988)
T ss_pred cccHHHHHHHHHHHHHHHHhCCcH--HHHHHHHHHHHhcCCcchhhhhhHHHHHHHH
Confidence 344455555555555555555443 2334455555555555555444443333333
No 148
>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length.
Probab=35.11 E-value=7.3e+02 Score=28.28 Aligned_cols=70 Identities=23% Similarity=0.255 Sum_probs=48.0
Q ss_pred HHHHHhhcchhhhhhhhhhcccc-cCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHH
Q 000609 249 IYDVYRCSPQILSGVVPYLTGEL-LTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLE 325 (1393)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~eL-~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~ 325 (1393)
+.++-+..|+-=..+++.|..=| ..+++..+..|++.+.-+.... +-.+..+|+...+++ +-+-|-.+++
T Consensus 108 ~~~ic~~~p~~g~~ll~~ls~~L~~~~~~~~~alale~l~~Lc~~~----vvd~~s~w~vl~~~l---~~~~rp~v~~ 178 (234)
T PF12530_consen 108 IRDICCSRPDHGVDLLPLLSGCLNQSCDEVAQALALEALAPLCEAE----VVDFYSAWKVLQKKL---SLDYRPLVLK 178 (234)
T ss_pred HHHHHHhChhhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHh----hccHHHHHHHHHHhc---CCccchHHHH
Confidence 44445555554444555666656 7899999999999999999543 456677999998888 3344444444
No 149
>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane. Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.
Probab=34.78 E-value=6.7e+02 Score=30.78 Aligned_cols=223 Identities=17% Similarity=0.210 Sum_probs=0.0
Q ss_pred CCCcHHHHHHHHHHHHHHHhhcCCchhHHHHHHHHHhhccHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhcCCCChHHH
Q 000609 509 DGDAPEIQKKILFCFRVMSRSFAEPAKAEENFLILDQLKDANVWKILMNLLDSNTSFDQAFTGRDDLLKILGAKHRLYDF 588 (1393)
Q Consensus 509 ~~d~~ei~~kl~~~i~~Ls~~fpDp~Ka~~~L~kf~klnD~ri~klLk~~id~~t~~~t~~~a~~ELlkrL~~~~~~~e~ 588 (1393)
+.+++....++.+.|-.+...| ..|=++.++.|.+--=.-+|++|.. ++++..|..+. +....|
T Consensus 102 d~~e~~~l~kvK~~i~~~~~ly--~~kY~e~f~~~l~~fv~~vw~lL~~-~~~~~~~D~lv-------------~~al~F 165 (370)
T PF08506_consen 102 DDDEPGLLEKVKAWICENLNLY--AEKYEEEFEPFLPTFVQAVWNLLTK-ISQQPKYDILV-------------SKALQF 165 (370)
T ss_dssp -SSS--HHHHHHHHHHHHHHHH--HHH-HHHHHHHHHHHHHHHHHHHTC---SSGGGHHHH-------------HHHHHH
T ss_pred CcccccHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHH-hhhcccccHHH-------------HHHHHH
Q ss_pred HHHHHHhhhcc-cc-chhHHHHHHHHH------------------------HhhcccchhhhHHHHHHHHHHHHhhCCcC
Q 000609 589 LSTLSMKCSYL-LF-NKEHVKEILLEV------------------------AAQKSSANAQFMQSCMDILGILARFSPLL 642 (1393)
Q Consensus 589 l~~Ll~R~S~l-i~-Nks~V~~LL~~~------------------------~~~~~~~~~~~~~~a~eLL~~IS~~~P~l 642 (1393)
+..+..+..+- +| |+.|+..|++.+ ..-..+...+.+..|.++|..+++.++.-
T Consensus 166 L~~v~~~~~~~~lf~~~~~L~~Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~ 245 (370)
T PF08506_consen 166 LSSVAESPHHKNLFENKPHLQQIIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ 245 (370)
T ss_dssp HHHHHTSHHHHTTT-SHHHHHHHHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHcchhHHHHhCCHHHHHHHHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH
Q ss_pred ccccHHHHHHHHhh-------ccccchhhHHHHHHHhhcchHhhhhcccc-----hHHHHHHHHhh-------cCChHHH
Q 000609 643 LGGTEEELVNLLKE-------ENEIIKEGILHVLAKAGGTIREQLAATSS-----SVDLLLERLCL-------EGSRRQA 703 (1393)
Q Consensus 643 Fk~~~~~L~~lL~~-------~~~~~~~~~LkiLa~~~k~~~e~~~~~~s-----~l~~~L~~lal-------~Gtp~qA 703 (1393)
..+-+...+..+.. .|...+++++..+..++-.....-.+..+ .+..-+..... ...|-.-
T Consensus 246 v~~i~~~~i~~~l~~y~~~~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~~~~~~~piLk 325 (370)
T PF08506_consen 246 VTSILMQYIQQLLQQYASNPSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQPDVNSHPILK 325 (370)
T ss_dssp HHHHHHHHHHHHHHHHHH-TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH-SS-S-HHHH
T ss_pred HHHHHHHHHHHHHHHHhhCCcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhcccCCCCcchH
Q ss_pred HHHHHHHHhhcCCCccchHHHHHHHHHHhhhhcCCCchHHHHHH
Q 000609 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTHLPAVLQSLG 747 (1393)
Q Consensus 704 K~Av~~Laa~~~~~~~~~~~~L~~~L~~~L~~~~~l~t~L~sL~ 747 (1393)
=.|++.+....+-=....+..++..++.+|...+...+..++.+
T Consensus 326 a~aik~~~~Fr~~l~~~~l~~~~~~l~~~L~~~~~vv~tyAA~~ 369 (370)
T PF08506_consen 326 ADAIKFLYTFRNQLPKEQLLQIFPLLVNHLQSSSYVVHTYAAIA 369 (370)
T ss_dssp HHHHHHHHHHGGGS-HHHHHHHHHHHHHHTTSS-HHHHHHHHHH
T ss_pred HHHHHHHHHHHhhCCHHHHHHHHHHHHHHhCCCCcchhhhhhhh
No 150
>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]
Probab=34.24 E-value=2.7e+02 Score=33.34 Aligned_cols=129 Identities=21% Similarity=0.273 Sum_probs=85.7
Q ss_pred ChHHHHH---HHHHHHHhhcCC-CCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCCh--------HH
Q 000609 275 QLDTRLK---AVGLVGDLFAVP-GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADA--------PQ 342 (1393)
Q Consensus 275 ~~~~Rl~---At~llG~mfs~~-~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~--------~e 342 (1393)
|+..|-. .|..|-|+|... |..++..|....+.=| ..| +..|.+..++.++-|+.+. +.... .+
T Consensus 53 NenhrekttlcVscLERLfkakegahlapnlmpdLQrGL--iad-dasVKiLackqigcilEdc-DtnaVseillvvNae 128 (524)
T KOG4413|consen 53 NENHREKTTLCVSCLERLFKAKEGAHLAPNLMPDLQRGL--IAD-DASVKILACKQIGCILEDC-DTNAVSEILLVVNAE 128 (524)
T ss_pred cccccchhhhHHHHHHHHHhhccchhhchhhhHHHHhcc--cCC-cchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhh
Confidence 4444444 788889999765 5667777766655433 333 5678888888887766543 32222 25
Q ss_pred HHHHHHHHhCCchhHHHHHHHHHHHHhhhh--hcCCC-CHH-----HHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 343 ILTALCDRLLDFDENVRKQVVAVICDVACH--ALNSI-PVE-----TVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 343 i~~~L~~rL~D~DekVR~aaV~ai~~la~~--~l~~v-~~e-----~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
|.+.+.+++...|+.|-.+|++.|..++.+ .++.+ +.+ -+..++.|+-| -+|....+.+-++|..
T Consensus 129 ilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnlaakcnd---iaRvRVleLIieifSi 201 (524)
T KOG4413|consen 129 ILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLAAKCND---IARVRVLELIIEIFSI 201 (524)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHHhhhhh---HHHHHHHHHHHHHHhc
Confidence 667888899999999999999999998863 23322 222 25577777754 4666666666677664
No 151
>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=32.85 E-value=1.4e+03 Score=30.81 Aligned_cols=157 Identities=16% Similarity=0.205 Sum_probs=103.5
Q ss_pred hhcc-hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChh-hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHH
Q 000609 254 RCSP-QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCL 331 (1393)
Q Consensus 254 ~~~P-~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~-~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL 331 (1393)
+++- +++-.|+|++|+.++++|=..|-.|+-.+|-++-+|..+-- .-=+..-..-+.-..|++.-||-.---..+.|.
T Consensus 355 ~~~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~ 434 (859)
T KOG1241|consen 355 QCVGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIA 434 (859)
T ss_pred HHhcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHH
Confidence 4443 34557999999999999999999999999999998863311 111333344445556888888855555555665
Q ss_pred hcCCCC----CChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCH------------HHH---HHHHHhhccC
Q 000609 332 LTDPSR----ADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV------------ETV---KLVAERLRDK 392 (1393)
Q Consensus 332 ~~~p~~----~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~------------e~L---~~l~eR~rDK 392 (1393)
...|+. ...+.++..+..=|+| ..+|=..+|-++..++....+..+. .++ -.+++|.-=-
T Consensus 435 d~l~e~~~n~~~l~~~l~~l~~gL~D-ePrva~N~CWAf~~Laea~~eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgn 513 (859)
T KOG1241|consen 435 DFLPEAIINQELLQSKLSALLEGLND-EPRVASNVCWAFISLAEAAYEAAVSNGQTDPATPFYEAIIGSLLKVTDRADGN 513 (859)
T ss_pred hhchhhcccHhhhhHHHHHHHHHhhh-CchHHHHHHHHHHHHHHHHHHhccCCCCCCccchhHHHHHHHHHhhccccccc
Confidence 555432 1223556677777776 5788888888888887433222211 122 2445555445
Q ss_pred ChhHHHHHHHHHHHHHHHh
Q 000609 393 SVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 393 K~~VR~eAm~~La~lY~~~ 411 (1393)
-...|..|-+.|+.+-+..
T Consensus 514 qsNLR~AAYeALmElIk~s 532 (859)
T KOG1241|consen 514 QSNLRSAAYEALMELIKNS 532 (859)
T ss_pred hhhHHHHHHHHHHHHHHcC
Confidence 5789999999999988853
No 152
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=32.58 E-value=2.8e+02 Score=38.02 Aligned_cols=137 Identities=15% Similarity=0.144 Sum_probs=85.4
Q ss_pred cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCC-ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcC
Q 000609 256 SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGS-ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD 334 (1393)
Q Consensus 256 ~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~-~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~ 334 (1393)
.++++.--+.+|+.. .+.-+|+=+.-.||+++..-.. .+.=..-......+.=..|-.|+||.+.|-+.+.+|.+-
T Consensus 597 ~~~li~iCle~lnd~---~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~AhekL~~~LsD~vpEVRaAAVFALgtfl~~~ 673 (1387)
T KOG1517|consen 597 NGNLIGICLEHLNDD---PEPLLRQWLCICLGRLWEDYDEARWSGRRDNAHEKLILLLSDPVPEVRAAAVFALGTFLSNG 673 (1387)
T ss_pred cccHHHHHHHHhcCC---ccHHHHHHHHHHHHHHhhhcchhhhccccccHHHHHHHHhcCccHHHHHHHHHHHHHHhccc
Confidence 455555444443332 2688999999999999987432 122233344455566678999999999999999988764
Q ss_pred CCCCChHHHHHHHHHHhCC-chhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 335 PSRADAPQILTALCDRLLD-FDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 335 p~~~~~~ei~~~L~~rL~D-~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
.+.-++ -....+...| +|++++.+-... ..+-.++.++.|=.+-||.+-...|+.+-..|.
T Consensus 674 ~d~fde---~~~~~~~~~~l~~~~~~~E~~i~--------------~~~~~ll~~vsdgsplvr~ev~v~ls~~~~g~~ 735 (1387)
T KOG1517|consen 674 SDNFDE---QTLVVEEEIDLDDERTSIEDLII--------------KGLMSLLALVSDGSPLVRTEVVVALSHFVVGYV 735 (1387)
T ss_pred ccccch---hhhhhhhhhcchhhhhhHHHHHH--------------hhHHHHHHHHhccchHHHHHHHHHHHHHHHhhH
Confidence 321111 1122234444 445544441111 112356789999999999998888888766553
No 153
>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein). Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.
Probab=31.99 E-value=1.2e+02 Score=32.02 Aligned_cols=71 Identities=15% Similarity=0.238 Sum_probs=45.4
Q ss_pred hhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcCcccc------HHHHHHHHhh-ccccchhhHHHHHHHhhcc
Q 000609 603 KEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLLLGGT------EEELVNLLKE-ENEIIKEGILHVLAKAGGT 675 (1393)
Q Consensus 603 ks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~lFk~~------~~~L~~lL~~-~~~~~~~~~LkiLa~~~k~ 675 (1393)
+..+..|.+++.. +|..-.-.|+.||..+.+.|...|... .++|.+++.. .++.+...+|..+..|+..
T Consensus 36 k~a~ral~KRl~~----~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~ 111 (144)
T cd03568 36 KDCLKAIMKRLNH----KDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE 111 (144)
T ss_pred HHHHHHHHHHHcC----CCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence 4455555555532 222233456777777777777777765 3677777776 3455778888888888765
Q ss_pred hH
Q 000609 676 IR 677 (1393)
Q Consensus 676 ~~ 677 (1393)
++
T Consensus 112 f~ 113 (144)
T cd03568 112 FK 113 (144)
T ss_pred hC
Confidence 44
No 154
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.84 E-value=7.1e+02 Score=33.72 Aligned_cols=40 Identities=23% Similarity=0.233 Sum_probs=28.2
Q ss_pred hHHHHHHHh-cchhhhcCCCcchHHHHHHHHHHHHhhcCCC
Q 000609 51 AMQPFLNAI-VQPVLLKHQDKDVKLLVATCICEITRITAPE 90 (1393)
Q Consensus 51 sl~~~~~~L-v~~~LL~HkD~~Vr~~vAcCLadIlRI~APd 90 (1393)
++..++.+| +=..||.|.|+.+=-+++.|++-|.-=++|+
T Consensus 329 ~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~ 369 (1051)
T KOG0168|consen 329 EFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHG 369 (1051)
T ss_pred cchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccC
Confidence 345555555 4467888888888888888887776656555
No 155
>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=31.79 E-value=3.6e+02 Score=32.76 Aligned_cols=145 Identities=15% Similarity=0.123 Sum_probs=92.6
Q ss_pred hhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHH
Q 000609 264 VPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQI 343 (1393)
Q Consensus 264 iP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei 343 (1393)
+|.--....+-+.+.|..|..-|-.+.-..+-+..=.--.-|.--|+=.++.++.||.....-++.+..|||.- ...+
T Consensus 85 ~~~~~~~~~s~~le~ke~ald~Le~lve~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~--Qe~v 162 (342)
T KOG2160|consen 85 IPIVILNSSSVDLEDKEDALDNLEELVEDIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKS--QEQV 162 (342)
T ss_pred hhhhccCcccCCHHHHHHHHHHHHHHHHhhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHH--HHHH
Confidence 45555566677888899999888766544321111111235888888889999999999999999999999842 1223
Q ss_pred HH------HHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC-------CHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 344 LT------ALCDRLLDFDENVRKQVVAVICDVACHALNSI-------PVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 344 ~~------~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v-------~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
++ -+..--.|.+..||..|.-||+.+........ ....|..+.++= +.....++.|+..++.+-..
T Consensus 163 ~E~~~L~~Ll~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~-~~~~~lkrK~~~Ll~~Ll~~ 241 (342)
T KOG2160|consen 163 IELGALSKLLKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSN-NTSVKLKRKALFLLSLLLQE 241 (342)
T ss_pred HHcccHHHHHHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcC-CcchHHHHHHHHHHHHHHHh
Confidence 31 22222379999999999999997765432221 223343333321 14455666677777776665
Q ss_pred h
Q 000609 411 C 411 (1393)
Q Consensus 411 ~ 411 (1393)
.
T Consensus 242 ~ 242 (342)
T KOG2160|consen 242 D 242 (342)
T ss_pred h
Confidence 3
No 156
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=31.68 E-value=3.2e+02 Score=36.91 Aligned_cols=194 Identities=18% Similarity=0.217 Sum_probs=115.8
Q ss_pred HHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCC--chHHHHHHHHHHHHhhcCCChhhHHHHHHHHH
Q 000609 98 LKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE--CDELVNEMYSTFFAVASDDHPESVLSSMQTIM 175 (1393)
Q Consensus 98 LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~--~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL 175 (1393)
|..-|.+.-.-|.+-+|-..|.|.---+.|+- -|+|+-+. ...+..+ + -+-+++......+|-
T Consensus 1036 L~~~~~f~~~vFs~sgd~g~~~f~~s~r~l~~------Sv~~~~i~~~~~l~~LR----~-----~n~~~~~~~~vSdik 1100 (1525)
T COG5219 1036 LGENHHFVEKVFSLSGDLGLPSFRCSDRKLEQ------SVLLERIGPRAILYVLR----K-----HNVPPQFVASVSDIK 1100 (1525)
T ss_pred HhhhhhhhhhheecccccCccHHHHHHHHHHh------hHhhccCCchHHHHHHH----H-----ccCcHHHHHhhccch
Confidence 44555555556666666666666555555542 12233322 1111111 1 122455555566666
Q ss_pred HHHhcccccccHHHHHHHHHhhcCCCcH----HHHHHHHHHHHHhhhhhhHHHHHHHH---HhhcCCCCCCCCchhHHHH
Q 000609 176 IVLLEESEDIQEDLLVILLSALGRNKND----TARRLAMNVIEQCAGKLEAGIKQFLV---SSMSGDSRPGHSHIDYHEV 248 (1393)
Q Consensus 176 ~~vI~Ese~vp~~vLd~IL~~l~~~~~~----~a~~lA~~vi~~~~dkl~~~i~q~f~---~~l~~d~~~~~~~~~~h~L 248 (1393)
..|.|-.|++..-++..++-++...++. +-++.-..++..|.-+.-+. ||+. ++...+ ++
T Consensus 1101 d~IvEsndsmn~lLlkflFthfs~lrN~~~sr~~~q~l~k~~~~~p~k~ves--Qy~e~fp~~~N~~-----------d~ 1167 (1525)
T COG5219 1101 DCIVESNDSMNYLLLKFLFTHFSYLRNEALSRAVSQLLLKCRKGFPIKFVES--QYFEGFPEFPNAD-----------DE 1167 (1525)
T ss_pred hhhhhcchHHHHHHHHHHHhhHHHHhhHHHHHHHHHHHHHHHhCCCchhhhh--hhhhcCcccCCch-----------hH
Confidence 6666667789999999988888654443 33455555555554443222 4543 211111 01
Q ss_pred HHHHHhhcchhhhhhhhhhcccccCCCh--HHHH-----------HHHHHHHHhhcCCCCCh------------hhhcHH
Q 000609 249 IYDVYRCSPQILSGVVPYLTGELLTDQL--DTRL-----------KAVGLVGDLFAVPGSAN------------NEQFHS 303 (1393)
Q Consensus 249 i~eL~~~~P~lL~~ViP~Le~eL~se~~--~~Rl-----------~At~llG~mfs~~~~~~------------~~~~~~ 303 (1393)
++++..++.|-..|++|+. .+|. +..+.+.+||--||--+ ...|=.
T Consensus 1168 ---------qmesv~mk~LreKls~d~~El~l~~~~~s~y~~d~Sl~~~~v~~~i~~Pgd~l~~v~k~ey~e~~~~vYL~ 1238 (1525)
T COG5219 1168 ---------QMESVCMKFLREKLSADDNELLLMLLAKSNYRNDRSLDMKGVVRMIERPGDHLLSVKKEEYRERHTIVYLP 1238 (1525)
T ss_pred ---------HHHHHHHHHHHHhhhhhhHHHHHHHHHHhCCCcccccCHhHHHHHhccccchhhhcCHHHHHHHhhHHHHH
Confidence 5556666667677766655 4444 44678999999887433 124778
Q ss_pred HHHHHHhcccCCChhHHHHHHHHhH
Q 000609 304 VFSEFLKRLTDRIVAVRMSVLEHVK 328 (1393)
Q Consensus 304 ~w~~fL~R~~D~s~~VR~~~v~~~~ 328 (1393)
+|+--++-|.|.+-.+|..++++..
T Consensus 1239 ~w~lI~~hf~dT~yNm~~siI~qL~ 1263 (1525)
T COG5219 1239 LWRLIYGHFADTVYNMYSSIISQLD 1263 (1525)
T ss_pred HHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 8999999999999999999998865
No 157
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=31.46 E-value=75 Score=25.74 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=25.2
Q ss_pred HHHHHHHHHhCCchhHHHHHHHHHHHHhh
Q 000609 342 QILTALCDRLLDFDENVRKQVVAVICDVA 370 (1393)
Q Consensus 342 ei~~~L~~rL~D~DekVR~aaV~ai~~la 370 (1393)
..++.|...|.+.|+.||.+|+-+++.++
T Consensus 12 g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 12 GGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp THHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 36788888999999999999999998765
No 158
>KOG2153 consensus Protein involved in the nuclear export of pre-ribosomes [Translation, ribosomal structure and biogenesis; Intracellular trafficking, secretion, and vesicular transport]
Probab=30.76 E-value=1.3e+02 Score=38.89 Aligned_cols=63 Identities=13% Similarity=0.013 Sum_probs=49.3
Q ss_pred HHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh-cCCCCHHHH
Q 000609 320 RMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIPVETV 382 (1393)
Q Consensus 320 R~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~v~~e~L 382 (1393)
=..+++|+..++...|+......|+.++-..+.|++.-||...|++|..+.... ...++..++
T Consensus 302 ~~vav~c~~~Ll~a~pHFN~~~kiv~l~vr~in~~~~~~s~~~i~t~k~lf~~D~~g~~sl~~V 365 (704)
T KOG2153|consen 302 AQVAVQCACELLEAVPHFNLRQKIVKLVVRLINDPGRPVSSGCIQTIKTLFENDNGGSGSLAIV 365 (704)
T ss_pred HHHHHHHHHHHHHhhhhccHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhcCCCccchhHHHH
Confidence 346788888888888887777899999999999999999999999998776533 334444433
No 159
>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=30.36 E-value=88 Score=39.66 Aligned_cols=62 Identities=16% Similarity=0.172 Sum_probs=38.9
Q ss_pred cCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCC
Q 000609 313 TDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI 377 (1393)
Q Consensus 313 ~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v 377 (1393)
+|+++-.|..=+-...-...-. . . ..-+-.-|.--..|.++.||+|||-+++-+.|.....+
T Consensus 526 ~d~ds~lRy~G~fs~alAy~GT-g-n-~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~~l 587 (926)
T COG5116 526 YDKDSILRYNGVFSLALAYVGT-G-N-LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRDLL 587 (926)
T ss_pred cCchHHhhhccHHHHHHHHhcC-C-c-chhHhhhheeecccCchHHHHHHHHheeeeEecCcchh
Confidence 6888888876554433222211 1 1 11233334445889999999999999987777766654
No 160
>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule). It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me
Probab=30.13 E-value=4.3e+02 Score=27.33 Aligned_cols=81 Identities=7% Similarity=0.027 Sum_probs=57.6
Q ss_pred HHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcC-----CCCHHHHHHHHHhhccC---ChhHHHHH
Q 000609 329 SCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALN-----SIPVETVKLVAERLRDK---SVLVKRYT 400 (1393)
Q Consensus 329 ~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~-----~v~~e~L~~l~eR~rDK---K~~VR~eA 400 (1393)
+++.+.+ ....+.+.+|.+||...+.+|.+.|+..+-.+....-. ..+.+.+..+...+..+ ...||+.+
T Consensus 26 d~I~~~~--~~~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~ki 103 (133)
T cd03561 26 DLINLKP--NGPKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKA 103 (133)
T ss_pred HHHhCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHH
Confidence 3344443 34679999999999999999999999998877654322 22446666666666654 46899998
Q ss_pred HHHHHHHHHHh
Q 000609 401 MERLADIFRGC 411 (1393)
Q Consensus 401 m~~La~lY~~~ 411 (1393)
+..+..-+..+
T Consensus 104 l~ll~~W~~~f 114 (133)
T cd03561 104 LELILAWSESF 114 (133)
T ss_pred HHHHHHHHHHh
Confidence 88877666544
No 161
>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]
Probab=29.49 E-value=8.2e+02 Score=30.03 Aligned_cols=146 Identities=15% Similarity=0.167 Sum_probs=106.5
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC--CChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCC
Q 000609 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG--SANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRA 338 (1393)
Q Consensus 261 ~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~--~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~ 338 (1393)
.+-+|.|-.-|.+.|.++|--+|..+|.+--... --++++-|-+-.+...=..|-++.|.++..-+... |.+.. +
T Consensus 207 aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrn-lasdt--~ 283 (550)
T KOG4224|consen 207 AGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRN-LASDT--E 283 (550)
T ss_pred cCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhh-hcccc--h
Confidence 3578888889999999999999999997654421 23678888899999999999999998877666554 33221 1
Q ss_pred ChHHHH-----HHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCC---HHHHHHHHHhhccCChh-HHHHHHHHHHHHHH
Q 000609 339 DAPQIL-----TALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAERLRDKSVL-VKRYTMERLADIFR 409 (1393)
Q Consensus 339 ~~~ei~-----~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~---~e~L~~l~eR~rDKK~~-VR~eAm~~La~lY~ 409 (1393)
-..+|+ +.+-+.|.|+--..=++.|..|..++.+.+..++ ..+|+-|...+|=+... +...|...|-+|-.
T Consensus 284 Yq~eiv~ag~lP~lv~Llqs~~~plilasVaCIrnisihplNe~lI~dagfl~pLVrlL~~~dnEeiqchAvstLrnLAa 363 (550)
T KOG4224|consen 284 YQREIVEAGSLPLLVELLQSPMGPLILASVACIRNISIHPLNEVLIADAGFLRPLVRLLRAGDNEEIQCHAVSTLRNLAA 363 (550)
T ss_pred hhhHHHhcCCchHHHHHHhCcchhHHHHHHHHHhhcccccCcccceecccchhHHHHHHhcCCchhhhhhHHHHHHHHhh
Confidence 223444 4677778888888888999999888888887653 34566666666666554 88888777766544
No 162
>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []. The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.
Probab=29.26 E-value=2.6e+02 Score=33.61 Aligned_cols=128 Identities=18% Similarity=0.240 Sum_probs=0.0
Q ss_pred hhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhh--------hcHHHHHHHHhcccCCCh---------hHH
Q 000609 258 QILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE--------QFHSVFSEFLKRLTDRIV---------AVR 320 (1393)
Q Consensus 258 ~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~--------~~~~~w~~fL~R~~D~s~---------~VR 320 (1393)
.+|.+=+..|+..|.+....+...+.+++..|.+-.|...++ +++.+=+-.--|..+... +||
T Consensus 52 ~iL~~~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR 131 (330)
T PF11707_consen 52 SILQNHLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIR 131 (330)
T ss_pred HHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHH
Q ss_pred HHHHHHhHHHHhcCC---------CCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhcc
Q 000609 321 MSVLEHVKSCLLTDP---------SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRD 391 (1393)
Q Consensus 321 ~~~v~~~~~iL~~~p---------~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rD 391 (1393)
..+++++-.+|...+ .+....-+.++|.. |+.+.|+.- |..+.+++-+
T Consensus 132 ~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~---D~~~~v~~i--------------------L~~l~~~Vl~ 188 (330)
T PF11707_consen 132 TNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRK---DPPETVILI--------------------LETLKDKVLK 188 (330)
T ss_pred HHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccC---CCHHHHHHH--------------------HHHHHHHhcc
Q ss_pred CChhHHH---------HHHHHHHHHHH
Q 000609 392 KSVLVKR---------YTMERLADIFR 409 (1393)
Q Consensus 392 KK~~VR~---------eAm~~La~lY~ 409 (1393)
-. .|.+ .++..|+.+|.
T Consensus 189 ~~-~v~r~~K~~~fn~~~L~~l~~Ly~ 214 (330)
T PF11707_consen 189 DS-SVSRSTKCKLFNEWTLSQLASLYS 214 (330)
T ss_pred CC-CCChhhhhhhcCHHHHHHHHHHhc
No 163
>PF11919 DUF3437: Domain of unknown function (DUF3437); InterPro: IPR021843 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 142 to 163 amino acids in length. ; PDB: 3L5Q_6 1VSY_5.
Probab=28.85 E-value=1.3e+02 Score=29.43 Aligned_cols=57 Identities=16% Similarity=0.166 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHHHhhhhhcCCCCH---HHHHHHHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 355 DENVRKQVVAVICDVACHALNSIPV---ETVKLVAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 355 DekVR~aaV~ai~~la~~~l~~v~~---e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
+...|.++|-.+|.+....+..||. ++|..|+....| ...||+.+=+.|++.++.+.
T Consensus 2 ~~~~rH~~VLGL~Alv~a~Py~vP~w~P~~l~~La~~~~~-~~~I~~tvk~tl~eFkrtH~ 61 (90)
T PF11919_consen 2 DLRRRHAAVLGLSALVLAFPYDVPPWMPEVLEELARHAND-PQPIRTTVKKTLSEFKRTHQ 61 (90)
T ss_dssp H-HHHHHHHHHHHHHHTT-S--SS-HHHHHHHHHHTTSSS--SSHHHHTHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHhCC-CchHHHHHHHHHHHHHHhCc
Confidence 3567899999999998888889987 567889999997 78999999999999999874
No 164
>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes. It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.
Probab=27.73 E-value=3e+02 Score=31.66 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=63.3
Q ss_pred CChHHHHHHHHHHHHhhcCC-CCChhhhcHH-HHHHHHhcccCC----ChhHHHHHHHHhHHHHh---cCC-CCCChHHH
Q 000609 274 DQLDTRLKAVGLVGDLFAVP-GSANNEQFHS-VFSEFLKRLTDR----IVAVRMSVLEHVKSCLL---TDP-SRADAPQI 343 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~-~~~~~~~~~~-~w~~fL~R~~D~----s~~VR~~~v~~~~~iL~---~~p-~~~~~~ei 343 (1393)
.....++.+.+++..||+.+ +....-.|.. ..-.-+...... ...+|+++...+-++-. .++ ..+...++
T Consensus 122 ~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~l 201 (268)
T PF08324_consen 122 SPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSEL 201 (268)
T ss_dssp SSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHH
T ss_pred CcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHH
Confidence 78999999999999999975 4455566666 444444444444 68899999988876422 223 22333456
Q ss_pred HHHHHHHhC-C-chhHHHHHHHHHHHHhh
Q 000609 344 LTALCDRLL-D-FDENVRKQVVAVICDVA 370 (1393)
Q Consensus 344 ~~~L~~rL~-D-~DekVR~aaV~ai~~la 370 (1393)
+..+.+-+. . .|+.+....+.+++.+.
T Consensus 202 l~~i~~~~~~~~~d~Ea~~R~LvAlGtL~ 230 (268)
T PF08324_consen 202 LSSIIEVLSREESDEEALYRLLVALGTLL 230 (268)
T ss_dssp HHHHHHHCHCCHTSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccccCCHHHHHHHHHHHHHHh
Confidence 776666332 2 46666666677887766
No 165
>PF12830 Nipped-B_C: Sister chromatid cohesion C-terminus
Probab=27.43 E-value=4.1e+02 Score=29.16 Aligned_cols=66 Identities=14% Similarity=0.179 Sum_probs=54.8
Q ss_pred HHHHHHHhcccCCChhHHHHHHHHhHHHHh---cCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh
Q 000609 303 SVFSEFLKRLTDRIVAVRMSVLEHVKSCLL---TDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1393)
Q Consensus 303 ~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~---~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1393)
..|...|.-..+.+..||...++.+..++. .||. +.++.|.-..-|+++.||..|.+...++....
T Consensus 8 ryl~~Il~~~~~~~~~vr~~Al~~l~~il~qGLvnP~-----~cvp~lIAL~ts~~~~ir~~A~~~l~~l~eK~ 76 (187)
T PF12830_consen 8 RYLKNILELCLSSDDSVRLAALQVLELILRQGLVNPK-----QCVPTLIALETSPNPSIRSRAYQLLKELHEKH 76 (187)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHHhcCCCChH-----HHHhHhhhhhCCCChHHHHHHHHHHHHHHHHh
Confidence 357788888899999999999999998885 4553 78899999999999999999888887765433
No 166
>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term
Probab=27.08 E-value=1.1e+03 Score=29.05 Aligned_cols=195 Identities=15% Similarity=0.188 Sum_probs=107.8
Q ss_pred HHHHHHHHHHHHhhhhhhHHHH----HHHHHhhcCCCCCCCCchhHHHHHHHHHhh-------cchhhhhhhhhhccccc
Q 000609 204 TARRLAMNVIEQCAGKLEAGIK----QFLVSSMSGDSRPGHSHIDYHEVIYDVYRC-------SPQILSGVVPYLTGELL 272 (1393)
Q Consensus 204 ~a~~lA~~vi~~~~dkl~~~i~----q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~-------~P~lL~~ViP~Le~eL~ 272 (1393)
+||++.+-+|..... ++..++ -|+.-.+..+....-+...+..+|+.+..+ ...++..++--.|+
T Consensus 44 a~yRilRy~i~d~~~-l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~l~~~~~~~~~~~~vvralvaiae~--- 119 (371)
T PF14664_consen 44 AGYRILRYLISDEES-LQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAFLEIKKGPKEIPRGVVRALVAIAEH--- 119 (371)
T ss_pred HHHHHHHHHHcCHHH-HHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHHHHhcCCcccCCHHHHHHHHHHHhC---
Confidence 778888877755422 222221 122222222322222333577888888777 34555666666565
Q ss_pred CCChHHHHHHHHHHHHhhcCCCCChh---hhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-------CChHH
Q 000609 273 TDQLDTRLKAVGLVGDLFAVPGSANN---EQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-------ADAPQ 342 (1393)
Q Consensus 273 se~~~~Rl~At~llG~mfs~~~~~~~---~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-------~~~~e 342 (1393)
.+...|..|.+|+.++.-... +++ .-++.+.+. ..|-..++=-.++...-+++ ++|.. -+.+.
T Consensus 120 -~~D~lr~~cletL~El~l~~P-~lv~~~gG~~~L~~~----l~d~~~~~~~~l~~~lL~lL-d~p~tR~yl~~~~dL~~ 192 (371)
T PF14664_consen 120 -EDDRLRRICLETLCELALLNP-ELVAECGGIRVLLRA----LIDGSFSISESLLDTLLYLL-DSPRTRKYLRPGFDLES 192 (371)
T ss_pred -CchHHHHHHHHHHHHHHhhCH-HHHHHcCCHHHHHHH----HHhccHhHHHHHHHHHHHHh-CCcchhhhhcCCccHHH
Confidence 888999999999999875432 111 122344444 44544445445555555533 45531 22344
Q ss_pred HHHHHHHH----hCCch--hHHHHHHHHHHHHhhhh-----hcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 343 ILTALCDR----LLDFD--ENVRKQVVAVICDVACH-----ALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 343 i~~~L~~r----L~D~D--ekVR~aaV~ai~~la~~-----~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
++..+.+- ..|.. ++.+ ++.++|..+-.. .+..-+..-++.+.+=++=..+.||+.-+..+-.+++.
T Consensus 193 l~apftd~~~~~~~~~~~~~~l~-~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllri 270 (371)
T PF14664_consen 193 LLAPFTDFHYRKIKDDRELERLQ-ASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLRI 270 (371)
T ss_pred HHHhhhhhhccccccchHHHHHH-HHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHCC
Confidence 55555544 22222 2222 233344333221 11222336788888888888889999999999999984
No 167
>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]
Probab=26.09 E-value=1.3e+03 Score=31.50 Aligned_cols=57 Identities=16% Similarity=0.208 Sum_probs=36.7
Q ss_pred CCChhHHHHHHHHhHHHHhcCC----CCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhh
Q 000609 314 DRIVAVRMSVLEHVKSCLLTDP----SRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1393)
Q Consensus 314 D~s~~VR~~~v~~~~~iL~~~p----~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la 370 (1393)
++.|.+|.++..+...++.... .+....++.+++.....|.|..||.++-.+++.+.
T Consensus 382 ~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~ 442 (815)
T KOG1820|consen 382 GKNPQIKGECLLLLDRKLRKLGPKTVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVM 442 (815)
T ss_pred CCChhhHHHHHHHHHHHHhhcCCcCcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHH
Confidence 4455666665555555554332 23334567778888888888888888877777543
No 168
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=25.54 E-value=3.4e+02 Score=36.16 Aligned_cols=91 Identities=19% Similarity=0.264 Sum_probs=72.8
Q ss_pred hhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHH
Q 000609 243 IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMS 322 (1393)
Q Consensus 243 ~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~ 322 (1393)
.+.-.-|-+.+--.|+.+..|+..+|+ .|-.+|+-|++++.-+++..+.
T Consensus 107 dd~g~~iae~fik~qd~I~lll~~~e~----~DF~VR~~aIqLlsalls~r~~--------------------------- 155 (970)
T KOG0946|consen 107 DDLGLWIAEQFIKNQDNITLLLQSLEE----FDFHVRLYAIQLLSALLSCRPT--------------------------- 155 (970)
T ss_pred hHHHHHHHHHHHcCchhHHHHHHHHHh----hchhhhhHHHHHHHHHHhcCCH---------------------------
Confidence 356677888888899999999999887 8999999999999999988662
Q ss_pred HHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhh
Q 000609 323 VLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA 373 (1393)
Q Consensus 323 ~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~ 373 (1393)
.+.++|+.+|. =+..|.+-|.|+.|-||-+++-.++++...+
T Consensus 156 ---e~q~~ll~~P~------gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n 197 (970)
T KOG0946|consen 156 ---ELQDALLVSPM------GISKLMDLLRDSREPIRNEAILLLSELVKDN 197 (970)
T ss_pred ---HHHHHHHHCch------hHHHHHHHHhhhhhhhchhHHHHHHHHHccC
Confidence 23466777775 3456667899999999999999888776544
No 169
>KOG1243 consensus Protein kinase [General function prediction only]
Probab=25.52 E-value=5.2e+02 Score=34.07 Aligned_cols=154 Identities=12% Similarity=0.054 Sum_probs=107.0
Q ss_pred hcchhhh-hhhhhhcccccCCChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhc
Q 000609 255 CSPQILS-GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLT 333 (1393)
Q Consensus 255 ~~P~lL~-~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~ 333 (1393)
..++.+. .+.|++-.-+...|..+|..+++.+..+.+-=+-+ ...-++-+.|-.=-.|-.+.||.--+-+.+.|=--
T Consensus 361 Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~Ln~Ellr~~ar~q~d~~~~irtntticlgki~~~ 438 (690)
T KOG1243|consen 361 LTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--NLNGELLRYLARLQPDEHGGIRTNTTICLGKIAPH 438 (690)
T ss_pred cCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--hhcHHHHHHHHhhCccccCcccccceeeecccccc
Confidence 3444444 48899999999999999999999988776643322 34455555555555699999998887777664321
Q ss_pred -CCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhh-hhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHh
Q 000609 334 -DPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVAC-HALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 334 -~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~-~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~ 411 (1393)
+|+. .-.-+..++..-+.||=..-|.++|.+++.... .....|...++-.+.--+.|....||..|-..+-..+...
T Consensus 439 l~~~~-R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~~~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~kl 517 (690)
T KOG1243|consen 439 LAASV-RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFDQSEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLEKL 517 (690)
T ss_pred cchhh-hccccchhhhhhhcCCCCCchhhhhHHHhhcccccchhhhhhhccccccccccCcccchhhHHHHHHHHHHhhh
Confidence 1221 112355667667999999999999999885332 3344455556666677788999999999988877776643
No 170
>PF14911 MMS22L_C: S-phase genomic integrity recombination mediator, C-terminal
Probab=25.19 E-value=6.8e+02 Score=30.88 Aligned_cols=123 Identities=17% Similarity=0.243 Sum_probs=83.3
Q ss_pred CCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcchhhhcCCCcchHHHHHHHHHHHHhhcCCCCCCC--h
Q 000609 18 TPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQPVLLKHQDKDVKLLVATCICEITRITAPEAPYS--D 95 (1393)
Q Consensus 18 ~~~~s~~~LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~~~LL~HkD~~Vr~~vAcCLadIlRI~APdaPyt--d 95 (1393)
.||......+..|++|-+.+.. |+. ..+..-++.+.-.|...-++-|-..-||..+.--|-.|++-+. ..+.. .
T Consensus 223 ~p~p~l~~vL~fl~~Ll~~~~~--~~~-~~~~~~~~~~lp~lL~c~~~v~e~~~~k~~a~e~l~~mv~~~~-~~~~~~~~ 298 (373)
T PF14911_consen 223 APPPRLASVLAFLQQLLKRLQR--QNE-NQILTLLRLVLPSLLECLMLVNEEPQVKKLATELLQYMVESCQ-VGSSGEPR 298 (373)
T ss_pred CCCCcHHHHHHHHHHHHHhcCc--ccc-hhHHHHHHHhhHHHHHHHhhcCCCcchhHHHHHHHHHHHHccc-ccCcchHH
Confidence 3677778888888888777752 322 2445556666667777777777677799998888888887554 12222 3
Q ss_pred hHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhhhcccCCchHHHHHHHHHHHHhhc
Q 000609 96 DVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLECDELVNEMYSTFFAVAS 160 (1393)
Q Consensus 96 ~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~~Li~~lF~~ff~~v~ 160 (1393)
+++..+|.-|+.---. -|-.+||.+||++|+.. .++|..|+-++=..+.
T Consensus 299 ~~l~s~lrsfvqk~l~------~~t~~~f~~l~~vA~l~----------p~lV~~Lip~i~q~l~ 347 (373)
T PF14911_consen 299 EQLTSVLRSFVQKYLA------HYTYQYFQFLEKVAELD----------PQLVISLIPTIRQSLK 347 (373)
T ss_pred HHHHHHHHHHHHHHhh------hhhHHHHHHHHHHHHhC----------HHHHHHHHHHHHHHHH
Confidence 7788888888874322 24478999999999864 4566666666555443
No 171
>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]
Probab=25.15 E-value=1.6e+03 Score=29.22 Aligned_cols=316 Identities=18% Similarity=0.236 Sum_probs=0.0
Q ss_pred HHHHHHHccccCCCCCCHHHHHHHHHHHHHHHhhcCCCCchhhHHhHHHHHHHhcch-hhhcCCCcchHHHHHHHHHHHH
Q 000609 6 EQQLKEVGSKLETPPSTKDGLVKLLKQAATCLSELNQSPPASILEAMQPFLNAIVQP-VLLKHQDKDVKLLVATCICEIT 84 (1393)
Q Consensus 6 ~~~l~~~g~kL~~~~~s~~~LlkrL~~l~~~L~~~dQ~~~~~~~~sl~~~~~~Lv~~-~LL~HkD~~Vr~~vAcCLadIl 84 (1393)
|-.+-.||+-+.+|.. +.|.+..-++---+-.+.-|+.--..+.-.-++-.+.+. .-.-++-..+-..|..|+--
T Consensus 384 eaavmAfGSvm~gp~~--~~lT~~V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~vsa~liG-- 459 (858)
T COG5215 384 EAAVMAFGSVMHGPCE--DCLTKIVPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEVSASLIG-- 459 (858)
T ss_pred HHHHHHhhhhhcCccH--HHHHhhHHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHHHHHHhh--
Q ss_pred hhcCCCCCCChhHHHHHHHHHHHhcc-CCCCCCCCChhhHHHHHHHH------------HhhhhhhhcccCC--chHHHH
Q 000609 85 RITAPEAPYSDDVLKDIFQLIVGTFS-GLKDTGGPSFGRRVVILETL------------AKYRSCVVMLDLE--CDELVN 149 (1393)
Q Consensus 85 RI~APdaPytd~~LkdIF~l~v~qf~-~L~d~~~p~f~~~~~lLe~L------------a~vks~vl~~DL~--~~~Li~ 149 (1393)
--|-||-..--.--|.=++.+|. .-.+..++.|+.|.-||..| +.+-.|--+..|= |-+-+.
T Consensus 460 ---l~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l~~fY~ai~~~Lv~~t~~~~Ne~n~R~s~fsaLgtli~~~~d~V~ 536 (858)
T COG5215 460 ---LMDCPFRSINCSWRKENLVDHIAKAVREVESFLAKFYLAILNALVKGTELALNESNLRVSLFSALGTLILICPDAVS 536 (858)
T ss_pred ---hhccchHHhhhHHHHHhHHHhhhhhhccccchhHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhhcchhHH
Q ss_pred HHHHHHHHhhc----------------------CCChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCCcHHHHH
Q 000609 150 EMYSTFFAVAS----------------------DDHPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNKNDTARR 207 (1393)
Q Consensus 150 ~lF~~ff~~v~----------------------~~~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~~~~a~~ 207 (1393)
++.-.|++.+. ++.+.+....+..|...-=...+.+...++...+..+...+..-++.
T Consensus 537 ~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v~D~lm~Lf~r~les~~~t~~~~ 616 (858)
T COG5215 537 DILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDVEDQLMELFIRILESTKPTTAFG 616 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHhccCCchhhh
Q ss_pred HHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCchhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHH
Q 000609 208 LAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVG 287 (1393)
Q Consensus 208 lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG 287 (1393)
=.---|..-+..|+..+.+|... .+|+|..-|.-.|-.+=.-|+.++|
T Consensus 617 dV~~aIsal~~sl~e~Fe~y~~~--------------------------------fiPyl~~aln~~d~~v~~~avglvg 664 (858)
T COG5215 617 DVYTAISALSTSLEERFEQYASK--------------------------------FIPYLTRALNCTDRFVLNSAVGLVG 664 (858)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhh--------------------------------hhHHHHHHhcchhHHHHHHHHHHHH
Q ss_pred HhhcCCCCCh-----------------hhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHh-------cCCCCCChHHH
Q 000609 288 DLFAVPGSAN-----------------NEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL-------TDPSRADAPQI 343 (1393)
Q Consensus 288 ~mfs~~~~~~-----------------~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~-------~~p~~~~~~ei 343 (1393)
++--.-+.+| ...|+++=-+-|+-|.|+...|-..+..+.-.|.+ ..|+.++
T Consensus 665 dlantl~~df~~y~d~~ms~LvQ~lss~~~~R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~~---- 740 (858)
T COG5215 665 DLANTLGTDFNIYADVLMSSLVQCLSSEATHRDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSDE---- 740 (858)
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHhcChhhccccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCCc----
Q ss_pred HHHHHHHhCCchhHHHHHHHHHHHHh
Q 000609 344 LTALCDRLLDFDENVRKQVVAVICDV 369 (1393)
Q Consensus 344 ~~~L~~rL~D~DekVR~aaV~ai~~l 369 (1393)
--..|.-.++|..++.++..+
T Consensus 741 -----~~~~dy~~~~~~~v~~ayVgI 761 (858)
T COG5215 741 -----VYVDDYRKNAVQLVNCAYVGI 761 (858)
T ss_pred -----eeHHHHHHHHHHHHHHHHHHh
No 172
>cd06561 AlkD_like A new structural DNA glycosylase. This domain represents a new and uncharacterized structural superfamily of DNA glycosylases that form an alpha-alpha superhelix fold that are not belong to the identified five structural DNA glycosylase superfamilies (UDG, AAG/MNPG, MutM/Fpg and helix-hairpin-helix). DNA glycosylases removing alkylated base residues have been identified in all organisms investigated and may be universally present in nature. DNA glycosylases catalyze the first step in Base Excision Repair (BER) pathway by cleaving damaged DNA bases within double strand DNA to produce an abasic site. The resulting abasic site is further processed by AP endonuclease, phosphodiesterase, DNA polymerases, and DNA ligase functions to restore the DNA to an undamaged state. All glycosylase examined to date utilize a similar strategy for binding DNA and base flipping despite their structural diversity.
Probab=25.04 E-value=2.8e+02 Score=30.02 Aligned_cols=76 Identities=16% Similarity=0.126 Sum_probs=46.7
Q ss_pred hHHHHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHH
Q 000609 318 AVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVK 397 (1393)
Q Consensus 318 ~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR 397 (1393)
..|..|+-.++.+.. .....++++.+...+.|.+.-||.++--++.+++.. -|..++..+...-.+......
T Consensus 121 ~rR~~~~~~~~~~~~----~~~~~~~l~~~~~~~~d~~~~Vqkav~w~L~~~~~~----~~~~v~~~l~~~~~~~~~~t~ 192 (197)
T cd06561 121 VRRAAIVLLLRLIKK----ETDFDLLLEIIERLLHDEEYFVQKAVGWALREYGKK----DPERVIAFLEKNGLSMPRLTL 192 (197)
T ss_pred HHHHHHHHHHHHHHh----cccHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhh----CHHHHHHHHHHHHHhCChHHH
Confidence 455666666655443 122456777777777888888998888888877766 344555555444444444444
Q ss_pred HHHH
Q 000609 398 RYTM 401 (1393)
Q Consensus 398 ~eAm 401 (1393)
++|+
T Consensus 193 r~a~ 196 (197)
T cd06561 193 RYAI 196 (197)
T ss_pred HHHc
Confidence 4443
No 173
>PF08767 CRM1_C: CRM1 C terminal; InterPro: IPR014877 CRM1 (also known as Exportin1) mediates the nuclear export of proteins bearing a leucine-rich nuclear export signal (NES). CRM1 forms a complex with the NES containing protein and the small GTPase Ran. This region forms an alpha helical structure formed by six helical hairpin motifs that are structurally similar to the HEAT repeat, but share little sequence similarity to the HEAT repeat []. ; PDB: 3M1I_C 3GB8_A 1W9C_A 3NC1_A 3NBY_D 3NBZ_D 3NC0_A 3GJX_D.
Probab=24.94 E-value=4.9e+02 Score=31.19 Aligned_cols=126 Identities=10% Similarity=0.173 Sum_probs=75.9
Q ss_pred HHHHHHHHHHHHhcccc-------cccHHHHHHHHHhhcCC----CcHHHHHHHHHHHHHhhhhhhHHHHHHHHHh----
Q 000609 167 VLSSMQTIMIVLLEESE-------DIQEDLLVILLSALGRN----KNDTARRLAMNVIEQCAGKLEAGIKQFLVSS---- 231 (1393)
Q Consensus 167 v~~~m~~IL~~vI~Ese-------~vp~~vLd~IL~~l~~~----~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~---- 231 (1393)
|...+..++...|+-++ .+=+.+++.+|.-...+ |....-.+...||++-.+.+.+.+.+.+..+
T Consensus 43 iKkeIL~Li~t~i~~~~~~~~v~~~~i~~l~~~vL~DY~~~~p~~r~~evL~l~~~ii~kl~~~~~~~v~~I~~~vf~~T 122 (319)
T PF08767_consen 43 IKKEILKLIETFISKAEDPEEVANNFIPPLLDAVLGDYQNSVPDAREPEVLSLMATIINKLGELIQPQVPQILEAVFECT 122 (319)
T ss_dssp HHHHHHHHHHHHHHT-S-HHHHHHHTHHHHHHHHHHHHHHS-GGGS-HHHHHHHHHHHHHHGGGCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhcCCccccChhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence 44455555555555444 22234444444322222 2235567888888888887777777766543
Q ss_pred ---hcCCCCCC-CCchhHHHHHHHHHhhcchhhh--------hhhhhhcccccCCChHHHHHHHHHHHHhhcC
Q 000609 232 ---MSGDSRPG-HSHIDYHEVIYDVYRCSPQILS--------GVVPYLTGELLTDQLDTRLKAVGLVGDLFAV 292 (1393)
Q Consensus 232 ---l~~d~~~~-~~~~~~h~Li~eL~~~~P~lL~--------~ViP~Le~eL~se~~~~Rl~At~llG~mfs~ 292 (1393)
+..|-... +-....+.++..+.+.||+.+. .++-.+..-+++.+.++-..+.+.+..|+..
T Consensus 123 l~MI~~d~~~yPe~r~~ff~LL~~i~~~~f~~l~~lp~~~f~~~idsi~wg~kh~~~~I~~~~L~~l~~ll~~ 195 (319)
T PF08767_consen 123 LPMINKDFEEYPEHRVNFFKLLRAINEHCFPALLQLPPEQFKLVIDSIVWGFKHTNREISETGLNILLELLNN 195 (319)
T ss_dssp HHHHSSTSSSSHHHHHHHHHHHHHHHHHHTHHHHHS-HHHHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhhhhChHHHHHHHHHHHHHHHHhHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence 33331111 1123578888888888776664 4566677777888888888888888888853
No 174
>KOG2050 consensus Puf family RNA-binding protein [Translation, ribosomal structure and biogenesis]
Probab=24.74 E-value=1.3e+03 Score=30.15 Aligned_cols=123 Identities=8% Similarity=0.144 Sum_probs=66.4
Q ss_pred HHHHHHHHHHHHhhhhccCCCcchhccccchHHHhhhhcccCCC-----c-hhHHHHhhccCcCCCCCHHHHHHHHHHHH
Q 000609 399 YTMERLADIFRGCCLRNFNGSINQNEFEWIPGKILRCLYDKDFG-----S-DTIESVLCGSLFPTGFSVKDRVRHWVRIF 472 (1393)
Q Consensus 399 eAm~~La~lY~~~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~-----~-~lvE~vl~e~LlP~~~~~~~R~~~ll~l~ 472 (1393)
+|--.+...|+.+..- .+ -..++.-||.+.+. + ..++.|+.+ .++.|...+-++.
T Consensus 246 eaa~Vve~ay~~~A~l-------~Q-----r~~li~EfYG~efqlfK~sn~~Tl~kil~~-------~pekk~~I~~~l~ 306 (652)
T KOG2050|consen 246 EAAYVVEYAYNDFATL-------EQ-----RQYLIQEFYGDEFQLFKDSNDKTLDKILAE-------APEKKASILRHLK 306 (652)
T ss_pred HHHHHHHHHHHhhccH-------HH-----HHHHHHHHhhHHHHHHhccCcccHHHHHHh-------ChHhHHHHHHHHH
Confidence 5556677777765321 01 12234445544322 2 267777664 5677877777777
Q ss_pred hcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCCcHHHHHHHHHHHHHHHh--hcCCchhHHHHHHHHHhhccHH
Q 000609 473 SGFDRIEMKALEKILEQKQRLQQEMQRYLSLRQMHQDGDAPEIQKKILFCFRVMSR--SFAEPAKAEENFLILDQLKDAN 550 (1393)
Q Consensus 473 ~~lD~~~~kal~~il~~k~~l~~~~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~--~fpDp~Ka~~~L~kf~klnD~r 550 (1393)
..+++..-|....+ +-+-.+|..||..|. +++...-|+-....+.. +-||..++.=.+-.++..+||+
T Consensus 307 ~~I~~v~eKg~v~~----tivHk~mlEy~~~ad------e~e~~e~l~ll~elv~e~vHT~dGS~vAm~li~~a~aKeRK 376 (652)
T KOG2050|consen 307 AIITPVAEKGSVDH----TIVHKLMLEYLTIAD------EEEKSELLELLKELVPEMVHTRDGSRVAMKLIWHATAKERK 376 (652)
T ss_pred HHhHHHhhcchhHH----HHHHHHHHHHHHhCC------HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHhhCCHHHHH
Confidence 77777655544432 446778899998763 33333333333333333 3366665533333444456654
No 175
>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]
Probab=24.45 E-value=4.4e+02 Score=34.40 Aligned_cols=173 Identities=13% Similarity=0.090 Sum_probs=102.8
Q ss_pred hcccccCCChHHHHHHHHHHHHhhcC---CCCChhhhcHHHHHH--HHhcccCCChhHHHHHHHHhHH------HHhcCC
Q 000609 267 LTGELLTDQLDTRLKAVGLVGDLFAV---PGSANNEQFHSVFSE--FLKRLTDRIVAVRMSVLEHVKS------CLLTDP 335 (1393)
Q Consensus 267 Le~eL~se~~~~Rl~At~llG~mfs~---~~~~~~~~~~~~w~~--fL~R~~D~s~~VR~~~v~~~~~------iL~~~p 335 (1393)
...+|.+-++..|..+.+-.--|--. .+....++.-.++.. -.-..-=++..+|.+|+.+.+. +|.+-+
T Consensus 336 ~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL~tg~ 415 (678)
T KOG1293|consen 336 ICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSALRTGL 415 (678)
T ss_pred HHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 35667778888887765432211110 011223333333321 1111222456788888877654 455555
Q ss_pred CCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCH-----HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 336 SRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPV-----ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 336 ~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~-----e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
.+. ++..-|-.-|+||+-.|-..+.-+||.+.. .+..... ..++.+..-+.|+-+.+|+.+...|= +.
T Consensus 416 ~~~---dv~~plvqll~dp~~~i~~~~lgai~NlVm-efs~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr---~l 488 (678)
T KOG1293|consen 416 KRN---DVAQPLVQLLMDPEIMIMGITLGAICNLVM-EFSNLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLR---HL 488 (678)
T ss_pred ccc---hhHHHHHHHhhCcchhHHHHHHHHHHHHHh-hcccHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHH---HH
Confidence 433 677888888999999999999999998753 2222222 23568889999999999987776653 33
Q ss_pred hhhhccCCCcchhccccchHHHhhhhcccCCCchhHHHH
Q 000609 411 CCLRNFNGSINQNEFEWIPGKILRCLYDKDFGSDTIESV 449 (1393)
Q Consensus 411 ~~~~~~~~~~~~~~~~wIP~~IL~~~Y~~d~~~~lvE~v 449 (1393)
.+.. +...-.+-+.-||...+.+ |+||++...-|+.
T Consensus 489 ~f~~--de~~k~~~~~ki~a~~i~~-l~nd~d~~Vqeq~ 524 (678)
T KOG1293|consen 489 MFNC--DEEEKFQLLAKIPANLILD-LINDPDWAVQEQC 524 (678)
T ss_pred Hhcc--hHHHHHHHHHHhhHHHHHH-HHhCCCHHHHHHH
Confidence 3321 0001123467889888876 5788764444443
No 176
>KOG3723 consensus PH domain protein Melted [Signal transduction mechanisms]
Probab=23.45 E-value=1.7e+03 Score=28.88 Aligned_cols=49 Identities=20% Similarity=0.168 Sum_probs=39.4
Q ss_pred HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC
Q 000609 245 YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG 294 (1393)
Q Consensus 245 ~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~ 294 (1393)
+..++..++...|+.+.+-+|.|...|..-++..|.+ +..+--+++...
T Consensus 182 LLrvlS~Vye~~P~~i~PhlP~l~~lL~q~~p~~~~l-l~~l~~LI~Qk~ 230 (851)
T KOG3723|consen 182 LLRVLSAVYEKQPQPINPHLPELLALLSQLEPEQYHL-LRLLHVLIKQKQ 230 (851)
T ss_pred HHHHHHHHHhcCCCccCcccHHHHHHhcCCCHHHHHH-HHHHHHHHHhcc
Confidence 5678889999999999999999999999999888654 455555666543
No 177
>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]
Probab=23.35 E-value=1.5e+03 Score=30.85 Aligned_cols=184 Identities=14% Similarity=0.064 Sum_probs=104.3
Q ss_pred HHhhhccccchhHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHhhCCcC-cc-ccHHHHHHHHhhccccchhhHHHHHH
Q 000609 593 SMKCSYLLFNKEHVKEILLEVAAQKSSANAQFMQSCMDILGILARFSPLL-LG-GTEEELVNLLKEENEIIKEGILHVLA 670 (1393)
Q Consensus 593 l~R~S~li~Nks~V~~LL~~~~~~~~~~~~~~~~~a~eLL~~IS~~~P~l-Fk-~~~~~L~~lL~~~~~~~~~~~LkiLa 670 (1393)
+-|++-+.+.--.||.|+.++..- +-....+-+++-|..||+.+|.- ++ +.+...+.+|.-=...+...||-|.+
T Consensus 243 lP~S~a~vV~~~aIPvl~~kL~~I---eyiDvAEQ~LqALE~iSR~H~~AiL~AG~l~a~LsylDFFSi~aQR~Alaiaa 319 (1051)
T KOG0168|consen 243 LPRSSAIVVDEHAIPVLLEKLLTI---EYIDVAEQSLQALEKISRRHPKAILQAGALSAVLSYLDFFSIHAQRVALAIAA 319 (1051)
T ss_pred ccchhheeecccchHHHHHhhhhh---hhhHHHHHHHHHHHHHHhhccHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 447777777777888888876431 11124456788899999999853 22 23333333322111124467888888
Q ss_pred HhhcchHhhhhcccchHHHHHHHHhhcCChHHHHHHHHHHHhhcCCCccc-------hHHHHHHHHHHhhhhc--C-CCc
Q 000609 671 KAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAITKDDGLK-------SLSVLYKRLVDMLEEK--T-HLP 740 (1393)
Q Consensus 671 ~~~k~~~e~~~~~~s~l~~~L~~lal~Gtp~qAK~Av~~Laa~~~~~~~~-------~~~~L~~~L~~~L~~~--~-~l~ 740 (1393)
++.+.++..-+..--...+.|..+=.+-+.+-.-++.-|++.+...-... +-.+|++++..-|.-. . ..+
T Consensus 320 N~Cksi~sd~f~~v~ealPlL~~lLs~~D~k~ies~~ic~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~ 399 (1051)
T KOG0168|consen 320 NCCKSIRSDEFHFVMEALPLLTPLLSYQDKKPIESVCICLTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNG 399 (1051)
T ss_pred HHHhcCCCccchHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCccccccc
Confidence 99887654322111234677888777777777778888887766532210 1123444444444311 1 223
Q ss_pred hHHHH---HHHHHhhcccccccchHHHHHHHHHhhhcccccc
Q 000609 741 AVLQS---LGCIAQTAMPVFETRESEIEEFIKSKILRCSNKI 779 (1393)
Q Consensus 741 t~L~s---L~~Ia~~ap~vfe~~~~eI~~fiik~IL~~~~~~ 779 (1393)
++-.. |...+--.|..|.+....=+..+++.||......
T Consensus 400 ~~~~vIrmls~msS~~pl~~~tl~k~~I~~~L~~il~g~s~s 441 (1051)
T KOG0168|consen 400 TYTGVIRMLSLMSSGSPLLFRTLLKLDIADTLKRILQGYSKS 441 (1051)
T ss_pred chhHHHHHHHHHccCChHHHHHHHHhhHHHHHHHHHhccCcC
Confidence 33233 3333333688888765444456678888876553
No 178
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=22.58 E-value=6.5e+02 Score=33.34 Aligned_cols=219 Identities=16% Similarity=0.242 Sum_probs=123.6
Q ss_pred ChhhHHHHHHHHHHHHhcccccccHHHHHHHHHhhcCCC-----c----------H-----------HHHHHHHHHHHHh
Q 000609 163 HPESVLSSMQTIMIVLLEESEDIQEDLLVILLSALGRNK-----N----------D-----------TARRLAMNVIEQC 216 (1393)
Q Consensus 163 ~~~~v~~~m~~IL~~vI~Ese~vp~~vLd~IL~~l~~~~-----~----------~-----------~a~~lA~~vi~~~ 216 (1393)
.|..+.+.|-|...+.=..++...+.++.-|=..|..+. + + .--+|..+||+--
T Consensus 455 ~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s~phF~~~s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm 534 (1106)
T KOG0162|consen 455 RPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGSHPHFESRSNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELM 534 (1106)
T ss_pred CCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcCCCccccccCceEEEEeccceeeecccccccchhHHHHHHHHHH
Confidence 477788888888888888888888887776654553321 0 0 2246667776655
Q ss_pred hhhhhHHHHHHHHHhhcCCCC--CCCC--c--hhHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHH-HHHHHHHHHh
Q 000609 217 AGKLEAGIKQFLVSSMSGDSR--PGHS--H--IDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTR-LKAVGLVGDL 289 (1393)
Q Consensus 217 ~dkl~~~i~q~f~~~l~~d~~--~~~~--~--~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~R-l~At~llG~m 289 (1393)
...-.+.++..|-+-+..+++ +... . ..+.+|+..|.+|.|.-+--+=|.=+- --.|=++-| +.-++-||
T Consensus 535 ~ts~~~Fl~slFPe~v~~dskrRP~Tag~kIkkqANdLVeTLmKc~P~YIR~IKPNeTK-~pnD~ee~~V~HQveYLG-- 611 (1106)
T KOG0162|consen 535 QTSENPFLKSLFPENVDADSKRRPPTAGDKIKKQANDLVETLMKCQPHYIRCIKPNETK-SPNDWEESRVKHQVEYLG-- 611 (1106)
T ss_pred hccchHHHHHhCchhhcccccCCCCCchhhHHhhHHHHHHHHHhcCcceeEeeCCCCCC-CCccHHHHHHHHHHHhcc--
Confidence 555555555555444433322 2222 2 248999999999999999888886222 222223333 33444444
Q ss_pred hcCCC-C---ChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCCCChHHHHHH-HHHHhCCchhHHHHHHHH
Q 000609 290 FAVPG-S---ANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTA-LCDRLLDFDENVRKQVVA 364 (1393)
Q Consensus 290 fs~~~-~---~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~-L~~rL~D~DekVR~aaV~ 364 (1393)
..+ . -..=+|+.+|..|+.||.=.+|.- |-.+ .+++ .+-++. |.+--+++|+ --+-
T Consensus 612 --LqENiRvRRAGfAYRr~F~kF~qRyailsp~t---~~tw---------qGD~-~~av~~il~~~~m~~~q-yQmG--- 672 (1106)
T KOG0162|consen 612 --LQENIRVRRAGFAYRRAFDKFAQRYAILSPQT---WPTW---------QGDE-KQAVEHILRDVNMPSDQ-YQMG--- 672 (1106)
T ss_pred --hhhheeehhhhhHHHHHHHHHHHHheecCccc---cccc---------ccch-HHHHHHHHHhcCCChhH-hhcc---
Confidence 221 0 112368999999999998888765 4322 1222 233333 3333334333 1111
Q ss_pred HHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHHhhh
Q 000609 365 VICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCL 413 (1393)
Q Consensus 365 ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~~~~ 413 (1393)
....|-.-|+.++ +.|-||||++.== ..++-+.|+.+..
T Consensus 673 -----~tkVFiKnPEsLF--~LEemRer~~d~~---A~~IQkAWRrfv~ 711 (1106)
T KOG0162|consen 673 -----VTKVFIKNPESLF--LLEEMRERKWDGM---ARRIQKAWRRFVA 711 (1106)
T ss_pred -----ceeEEecChHHHH--HHHHHHHHHhhHH---HHHHHHHHHHHHH
Confidence 1122334466655 5688999988521 1233456766544
No 179
>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=22.20 E-value=2.2e+03 Score=29.75 Aligned_cols=320 Identities=15% Similarity=0.212 Sum_probs=0.0
Q ss_pred hhhhcCCCcchHHHHHHHHHHHHhhcC----CCCCCChhHHHHHHHHHHHhccCCCCCCCCChhhHHHHHHHHHhhhhhh
Q 000609 62 PVLLKHQDKDVKLLVATCICEITRITA----PEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1393)
Q Consensus 62 ~~LL~HkD~~Vr~~vAcCLadIlRI~A----PdaPytd~~LkdIF~l~v~qf~~L~d~~~p~f~~~~~lLe~La~vks~v 137 (1393)
..+|++.|..+=.-.-.|+..+.|-|- -+--+=...+...|--+...+-||-..++ -+-.-++.-+-++--.+
T Consensus 133 ~~~Lqs~~~~~vy~aLl~l~qL~k~ye~k~~eeR~~l~~~v~~~fP~il~~~~~ll~~~s---~~s~el~klIlKifks~ 209 (1010)
T KOG1991|consen 133 KNLLQSQDANHVYGALLCLYQLFKTYEWKKDEERQPLGEAVEELFPDILQIFNGLLSQES---YQSVELQKLILKIFKSL 209 (1010)
T ss_pred HHHhcCcchhhHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhhccccc---hHHHHHHHHHHHHHHHH
Q ss_pred hcccCC----chHHHHHHHHHHHHhhcCCC--------------------------------------------------
Q 000609 138 VMLDLE----CDELVNEMYSTFFAVASDDH-------------------------------------------------- 163 (1393)
Q Consensus 138 l~~DL~----~~~Li~~lF~~ff~~v~~~~-------------------------------------------------- 163 (1393)
.-.+|| ..+.+..-+..|..++...-
T Consensus 210 ~~~~LP~~L~~~~~f~~W~~l~l~i~~rpvP~E~l~~d~e~R~~~~wwK~KKWa~~~L~Rlf~Ryg~~~~~~~~y~~Fa~ 289 (1010)
T KOG1991|consen 210 IYYELPLELSAPETFTSWMELFLSILNRPVPVEVLSLDPEDRSSWPWWKCKKWALHILNRLFERYGSPSLVVPEYKEFAQ 289 (1010)
T ss_pred HHHhCCHHhhCchhHHHHHHHHHHHHcCCCChhcccCChhhcccccchhhHHHHHHHHHHHHHHhCCccccchhhHHHHH
Q ss_pred --hhhHHHHHHHHHHHHhccccc---ccHHHHHHHHHhh-----------------------------------------
Q 000609 164 --PESVLSSMQTIMIVLLEESED---IQEDLLVILLSAL----------------------------------------- 197 (1393)
Q Consensus 164 --~~~v~~~m~~IL~~vI~Ese~---vp~~vLd~IL~~l----------------------------------------- 197 (1393)
-.+....+....-.+|++-.. +++.+|-.+++-+
T Consensus 290 ~f~~n~~~~ile~~lk~l~~~~~~~yls~rvl~~~l~fl~~~Vs~~~twkll~PHl~~ii~~vIFPlmc~~d~deelwe~ 369 (1010)
T KOG1991|consen 290 MFLKNFAQGILEVFLKILEQWRQQLYLSDRVLYYLLNFLEQCVSHASTWKLLKPHLQVIIQDVIFPLMCFNDEDEELWEE 369 (1010)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhccHHHHHHHhhhHHHHHHHHhhhhhcCCCcccHHHHhc
Q ss_pred ---------------cCCCcHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhc------CCCCCCCCchhHHHHHHHHHhh-
Q 000609 198 ---------------GRNKNDTARRLAMNVIEQCAGKLEAGIKQFLVSSMS------GDSRPGHSHIDYHEVIYDVYRC- 255 (1393)
Q Consensus 198 ---------------~~~~~~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~------~d~~~~~~~~~~h~Li~eL~~~- 255 (1393)
+-....+|..+--.+|.+-..--=+.+-.|..+++. .+........-+...+-.|..+
T Consensus 370 DP~EYiR~~~Di~ed~~sp~~Aa~~~l~~~~~KR~ke~l~k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L 449 (1010)
T KOG1991|consen 370 DPYEYIRKKFDIFEDGYSPDTAALDFLTTLVSKRGKETLPKILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASIL 449 (1010)
T ss_pred CHHHHHHhcCchhcccCCCcHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHH
Q ss_pred ---cc--hhhhh-hhhhhcccccCCChHHHHHHHHHHHHhhcCC---CCChhhhcHHHHHHHHhcccCCChhHHHHHHHH
Q 000609 256 ---SP--QILSG-VVPYLTGELLTDQLDTRLKAVGLVGDLFAVP---GSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEH 326 (1393)
Q Consensus 256 ---~P--~lL~~-ViP~Le~eL~se~~~~Rl~At~llG~mfs~~---~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~ 326 (1393)
+| +.+-. +.+++-.++++.---.|..|..++|..=+.. ..++.+.+..+.+++++ |.+-+||++.+-+
T Consensus 450 ~K~s~~~~~mE~flv~hVfP~f~s~~g~Lrarac~vl~~~~~~df~d~~~l~~ale~t~~~l~~---d~~lPV~VeAalA 526 (1010)
T KOG1991|consen 450 LKKSPYKSQMEYFLVNHVFPEFQSPYGYLRARACWVLSQFSSIDFKDPNNLSEALELTHNCLLN---DNELPVRVEAALA 526 (1010)
T ss_pred ccCCchHHHHHHHHHHHhhHhhcCchhHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHhcc---CCcCchhhHHHHH
Q ss_pred hHHHHhcCCCCCC-----hHHHHHHHHHHhCCchhHHHHHHHHHHHHhhhhhcCCCCHHHHHHHHH
Q 000609 327 VKSCLLTDPSRAD-----APQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIPVETVKLVAE 387 (1393)
Q Consensus 327 ~~~iL~~~p~~~~-----~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~~e~L~~l~e 387 (1393)
...++.+.+...+ .+.+.+.|..-.++++-.+=..+.+.+..--..-+.-+-.++...|++
T Consensus 527 Lq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~vme~iV~~fseElsPfA~eL~q~La~ 592 (1010)
T KOG1991|consen 527 LQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTNVMEKIVCKFSEELSPFAVELCQNLAE 592 (1010)
T ss_pred HHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHhhchhHHHHHHHHHH
No 180
>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless. Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....
Probab=22.05 E-value=90 Score=25.27 Aligned_cols=30 Identities=23% Similarity=0.287 Sum_probs=26.5
Q ss_pred hhhhhhhcccccCCChHHHHHHHHHHHHhh
Q 000609 261 SGVVPYLTGELLTDQLDTRLKAVGLVGDLF 290 (1393)
Q Consensus 261 ~~ViP~Le~eL~se~~~~Rl~At~llG~mf 290 (1393)
.+++|.|-.-|.+++..+|..|+-.||.|-
T Consensus 11 ~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~ 40 (41)
T PF00514_consen 11 AGGIPPLVQLLKSPDPEVQEEAAWALGNLA 40 (41)
T ss_dssp TTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence 358888888899999999999999999874
No 181
>PF14228 MOR2-PAG1_mid: Cell morphogenesis central region
Probab=21.56 E-value=2.5e+03 Score=30.04 Aligned_cols=125 Identities=10% Similarity=0.035 Sum_probs=77.4
Q ss_pred HHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC-CChHHHHHHHHHHhCCchh
Q 000609 278 TRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR-ADAPQILTALCDRLLDFDE 356 (1393)
Q Consensus 278 ~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~-~~~~ei~~~L~~rL~D~De 356 (1393)
.+..+.+.|-.++- .+++++...+.|..--++.|-..+-.....++...+.. ....+++....-.+.|++.
T Consensus 486 ~~~lgr~AL~nLL~--------~N~dLl~~~IdrCYss~~~va~gYF~vlaev~~~~~~~~~~~~~LL~L~Lfklg~~~~ 557 (1120)
T PF14228_consen 486 RHSLGRRALKNLLE--------HNPDLLDWVIDRCYSSSPRVAEGYFTVLAEVFSEREYPPCPFWELLNLVLFKLGDESS 557 (1120)
T ss_pred HHHHHHHHHHHHHH--------hhHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHcCCCCCCCHHHhHHHHHHhhcCCcH
Confidence 33555555555554 34568888888888888888777767777777655431 2345677766678899999
Q ss_pred HHHHHHHHHHHHhhhhhcCCCCHHHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 357 NVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 357 kVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
.||..|++-+..+....+..-..+-....-+.+.++-+.|-+.+...|++-...
T Consensus 558 eIR~~A~qLL~~Le~R~~~~s~~~~~~~f~~si~s~l~~vYk~aQ~eLS~~LA~ 611 (1120)
T PF14228_consen 558 EIRSKAMQLLRALEERFFSSSGSEKSGDFRESISSKLPAVYKKAQFELSKRLAK 611 (1120)
T ss_pred HHHHHHHHHHHHHHHHhhcccccccccceehhccCCcHHHHHHHHHHHHHHHHH
Confidence 999998888877665444322211222233555666566655555555554443
No 182
>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis. In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.
Probab=21.55 E-value=1.5e+03 Score=27.49 Aligned_cols=166 Identities=13% Similarity=0.220 Sum_probs=90.1
Q ss_pred HHhhcCCCCCCCCchhHHHHHHHHHhh-cchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCC-CC------Chhhh
Q 000609 229 VSSMSGDSRPGHSHIDYHEVIYDVYRC-SPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVP-GS------ANNEQ 300 (1393)
Q Consensus 229 ~~~l~~d~~~~~~~~~~h~Li~eL~~~-~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~-~~------~~~~~ 300 (1393)
..++.|++.........+.|..|+++. .-.+|...+|.|+. +.|..++..++-++... +. ++...
T Consensus 49 K~IL~G~~e~ep~~e~v~qLa~Ei~~~dll~~Li~~L~~L~f-------EsrKdv~~if~~llr~~~~~~~~p~v~yl~~ 121 (335)
T PF08569_consen 49 KEILYGDGEPEPNPEQVAQLAQEIYRSDLLYLLIRNLPKLDF-------ESRKDVAQIFSNLLRRQIGSRSPPTVDYLER 121 (335)
T ss_dssp HHHHHS-SS----HHHHHHHHHHHHHHTHHHHHHHTGGGS-H-------HHHHHHHHHHHHHHT--BTTB--HHHHHHHT
T ss_pred HHHhcCCCCCCCCHHHHHHHHHHHHHhCHHHHHHHHhhhCCC-------cccccHHHHHHHHHhhccCCCCCchHHHHHh
Confidence 356777655444444578899999877 23344455666655 48999999999998763 22 23457
Q ss_pred c-HHHHHHHHhcccCCChhHHHHHHHHhHHH---------HhcCCCCCChHHHHHHHHHHhCCchhHHHHHHHHHHHHhh
Q 000609 301 F-HSVFSEFLKRLTDRIVAVRMSVLEHVKSC---------LLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVA 370 (1393)
Q Consensus 301 ~-~~~w~~fL~R~~D~s~~VR~~~v~~~~~i---------L~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la 370 (1393)
| |++....+.-..+.+..+=.. .-...| +..++ ...-+.+-...+.=.|=..|..++.++-
T Consensus 122 ~~peil~~L~~gy~~~dial~~g--~mlRec~k~e~l~~~iL~~~-------~f~~ff~~~~~~~Fdiasdaf~t~~~ll 192 (335)
T PF08569_consen 122 HRPEILDILLRGYENPDIALNCG--DMLRECIKHESLAKIILYSE-------CFWKFFKYVQLPNFDIASDAFSTFKELL 192 (335)
T ss_dssp --THHHHHHHHGGGSTTTHHHHH--HHHHHHTTSHHHHHHHHTSG-------GGGGHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHhcCccccchHH--HHHHHHHhhHHHHHHHhCcH-------HHHHHHHHhcCCccHhHHHHHHHHHHHH
Confidence 7 888888888777655433221 111111 11111 1112333444555555555555555543
Q ss_pred hhhcCCCCH-------HHHHHHHHhhccCChhHHHHHHHHHHHHHHH
Q 000609 371 CHALNSIPV-------ETVKLVAERLRDKSVLVKRYTMERLADIFRG 410 (1393)
Q Consensus 371 ~~~l~~v~~-------e~L~~l~eR~rDKK~~VR~eAm~~La~lY~~ 410 (1393)
..+-..+.. ..+......+.-.+.-.|+.++..||.+--.
T Consensus 193 t~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqslkLL~ellld 239 (335)
T PF08569_consen 193 TRHKKLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQSLKLLGELLLD 239 (335)
T ss_dssp HSSHHHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHHHHHHHHHHHS
T ss_pred hccHHHHHHHHHHHHHHHHHHHHHHccCCCeEeehhhHHHHHHHHHc
Confidence 322222211 2344556667777788888888888888754
No 183
>KOG0915 consensus Uncharacterized conserved protein [Function unknown]
Probab=21.01 E-value=2.8e+03 Score=30.42 Aligned_cols=139 Identities=17% Similarity=0.210 Sum_probs=103.2
Q ss_pred CChHHHHHHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCCCC---CChHHHHHHHHHH
Q 000609 274 DQLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSR---ADAPQILTALCDR 350 (1393)
Q Consensus 274 e~~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~---~~~~ei~~~L~~r 350 (1393)
.+..++-.-|-.-+-++.++.....+-+-+++.+.|.-..++.=-||.+..-+..++|..+|.. +...+++.++-+-
T Consensus 1010 P~~~Vq~aM~sIW~~Li~D~k~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRv 1089 (1702)
T KOG0915|consen 1010 PDKKVQDAMTSIWNALITDSKKVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRV 1089 (1702)
T ss_pred CcHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHH
Confidence 5677777777778888887654455566899999999999999999999999999999888742 3446788888888
Q ss_pred hCCchhHHHHHHHHHHHHhhhhhcC------CC-CHHHHHH-----HHHhhccCChhHHHHHHHHHHHHHHHhh
Q 000609 351 LLDFDENVRKQVVAVICDVACHALN------SI-PVETVKL-----VAERLRDKSVLVKRYTMERLADIFRGCC 412 (1393)
Q Consensus 351 L~D~DekVR~aaV~ai~~la~~~l~------~v-~~e~L~~-----l~eR~rDKK~~VR~eAm~~La~lY~~~~ 412 (1393)
.=|-.|.||.++=++...++.-... .. ..+++.. +.+-+--|-.+||+-+|..+.++-+.+-
T Consensus 1090 mDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~tl~dl~Kssg 1163 (1702)
T KOG0915|consen 1090 MDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGTLMDLAKSSG 1163 (1702)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHHHHHHHHhch
Confidence 8899999999876665555432211 11 1233332 3344445667999999999999998763
No 184
>PF08713 DNA_alkylation: DNA alkylation repair enzyme; InterPro: IPR014825 These proteins are predicted to be DNA alkylation repair enzymes. The structure of a hypothetical protein shows it to adopt a super coiled alpha helical structure. ; PDB: 3JY1_A 3JXY_A 3JX7_A 3JXZ_A 3BVS_A 2B6C_B 1T06_B 3L9T_A.
Probab=20.70 E-value=1.1e+03 Score=25.86 Aligned_cols=121 Identities=15% Similarity=0.117 Sum_probs=61.4
Q ss_pred HHHHHHHHHHHHHhhhhhhHHHHHHHHHhhcCCCCCCCCchh--HHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHH
Q 000609 203 DTARRLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHID--YHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRL 280 (1393)
Q Consensus 203 ~~a~~lA~~vi~~~~dkl~~~i~q~f~~~l~~d~~~~~~~~~--~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl 280 (1393)
...+.+|..|+..+...+.+....++...+..-+ .-...+ ...++..+..-. ..+.|.++.++.++++=.|.
T Consensus 65 ~E~~~la~~il~~~~~~~~~~~~~~~~~~~~~~~--~W~~~D~~~~~~~~~~~~~~----~~~~~~~~~W~~s~~~w~rR 138 (213)
T PF08713_consen 65 REERYLALLILDKRRKKLTEEDLELLEKWLPDID--NWATCDSLCSKLLGPLLKKH----PEALELLEKWAKSDNEWVRR 138 (213)
T ss_dssp HHHHHHHHHHHHHCGGG--HHHHHHHHHCCCCCC--CHHHHHHHTHHHHHHHHHHH----GGHHHHHHHHHHCSSHHHHH
T ss_pred HHHHHHHHHHhHHHhhhhhHHHHHHHHHHhccCC--cchhhhHHHHHHHHHHHHhh----HHHHHHHHHHHhCCcHHHHH
Confidence 3667788888877777776655455554443110 000001 112222211111 23567788888888888888
Q ss_pred HHHHHHHHhhcCCCCChhhhcHHHHHHHHhcccCCChhHHHHHHHHhHHHHhcCC
Q 000609 281 KAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDP 335 (1393)
Q Consensus 281 ~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p 335 (1393)
.|..++-..+.. ...+.++..--....|.+.-||.++-=+...+-..+|
T Consensus 139 ~~~v~~~~~~~~------~~~~~~l~~~~~~~~d~~~~vq~ai~w~L~~~~~~~~ 187 (213)
T PF08713_consen 139 AAIVMLLRYIRK------EDFDELLEIIEALLKDEEYYVQKAIGWALREIGKKDP 187 (213)
T ss_dssp HHHHCTTTHGGG------CHHHHHHHHHHHCTTGS-HHHHHHHHHHHHHHCTT-H
T ss_pred HHHHHHHHHHHh------cCHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhCH
Confidence 887665443332 2222333333344566677777666666665555444
No 185
>PF12612 TFCD_C: Tubulin folding cofactor D C terminal; InterPro: IPR022577 This region is found in eukaryotes, and is typically between 182 and 199 amino acids in length. There is a single completely conserved residue R that may be functionally important. Tubulin folding cofactor D does not co-polymerise with microtubules either in vivo or in vitro, but instead modulates microtubule dynamics by sequestering beta-tubulin from GTP-bound alphabeta-heterodimers in microtubules [].
Probab=20.37 E-value=3.7e+02 Score=29.64 Aligned_cols=113 Identities=24% Similarity=0.324 Sum_probs=56.1
Q ss_pred CcchHHHHHHHHHHHHhhcCCCCCCC--hhHHHHHHHHHHHhccCC-CCCCCCChhhHHHHHHHHHhhhhhhhcccCCch
Q 000609 69 DKDVKLLVATCICEITRITAPEAPYS--DDVLKDIFQLIVGTFSGL-KDTGGPSFGRRVVILETLAKYRSCVVMLDLECD 145 (1393)
Q Consensus 69 D~~Vr~~vAcCLadIlRI~APdaPyt--d~~LkdIF~l~v~qf~~L-~d~~~p~f~~~~~lLe~La~vks~vl~~DL~~~ 145 (1393)
-..||..++-||..++.-..|.-|+- .++|.+||..--.. .+ ......+|++-.-||. + +
T Consensus 20 iDrvR~~A~~~l~~ll~~~~~~~~~ip~~~~L~~i~~~~~~~--~~~w~~~~~~F~~l~~LL~-------------~--~ 82 (193)
T PF12612_consen 20 IDRVREVAGKCLQRLLHSQDPTIPHIPHREELQDIFPSESEA--SLNWSSSSEYFPRLVKLLD-------------L--P 82 (193)
T ss_pred HHHHHHHHHHHHHHHhcCCCccccCCCcHHHHHHHccccccc--ccccCCHHHHHHHHHHHhc-------------c--H
Confidence 34599999999999995443433433 36777777543221 11 1112234444443332 1 1
Q ss_pred HHHHHHHHHHHHhhcCCChhhHHHHHHHHHHHHhc---ccccccHHHHHHHHHhhcC
Q 000609 146 ELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLE---ESEDIQEDLLVILLSALGR 199 (1393)
Q Consensus 146 ~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~vI~---Ese~vp~~vLd~IL~~l~~ 199 (1393)
..-..++..+.--+ ++..+.+......-|...+. +.......++..|+..+..
T Consensus 83 ~y~~~ll~Glv~S~-G~~tesl~~~s~~AL~~~~~~~~~~~~~~~~v~~~l~~il~~ 138 (193)
T PF12612_consen 83 EYRYSLLSGLVVSA-GGLTESLVRASSAALLSYLRELSDSPEELEQVLSDLLSILKE 138 (193)
T ss_pred HHHHHHHhHHHhcC-CCCchhHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHH
Confidence 33334444444333 33444555555555555553 3344455555555555543
No 186
>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species. The function of this family is unknown.
Probab=20.27 E-value=1.3e+03 Score=26.87 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=63.6
Q ss_pred hHHHHHHHHHhhcchhhhhhhhhhcccccCCChHHHHHHHHHHHHhhcCCC---CChhhhcHHHHHHHHhcccCCChhHH
Q 000609 244 DYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPG---SANNEQFHSVFSEFLKRLTDRIVAVR 320 (1393)
Q Consensus 244 ~~h~Li~eL~~~~P~lL~~ViP~Le~eL~se~~~~Rl~At~llG~mfs~~~---~~~~~~~~~~w~~fL~R~~D~s~~VR 320 (1393)
+.+.+++.+..-.++.|...+-. ..-++=+|..|...++.+..... -...+-|+.+++.++.|- ++.
T Consensus 100 ~l~~ilasv~~G~~~~L~~li~~-----~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi~~f~~ll~~~l~~~----~~~- 169 (249)
T PF06685_consen 100 DLPRILASVGDGDIEPLKELIED-----PDADEYVRMAAISALAFLVHEGPISREEVIQYFRELLNYFLERN----PSF- 169 (249)
T ss_pred HHHHHHHHHhCCCHHHHHHHHhC-----CcHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHhccC----chH-
Confidence 46778887777777777775422 12357799999999998887643 124555566666666444 444
Q ss_pred HHHHHHhHHHHhcCCCCCChHHHHHHHHHHhCCch
Q 000609 321 MSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFD 355 (1393)
Q Consensus 321 ~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~D 355 (1393)
.|-..+..++--+|. +...+|-+++..-|+|+.
T Consensus 170 -~~~~Lv~~~~dL~~~-EL~~~I~~~f~~~lVd~~ 202 (249)
T PF06685_consen 170 -LWGSLVADICDLYPE-ELLPEIRKAFEDGLVDPS 202 (249)
T ss_pred -HHHHHHHHHHhcCHH-HhHHHHHHHHHcCCCCcc
Confidence 666666666654543 334566666666777664
Done!