Query 000609
Match_columns 1393
No_of_seqs 170 out of 295
Neff 6.0
Searched_HMMs 29240
Date Tue Mar 26 17:19:25 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000609.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_380-383//hhsearch_pdb/000609hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1b3u_A Protein (protein phosph 1.0 1 1 89.2 33.8 288 64-409 18-310 (588)
2 4fdd_A Transportin-1; heat rep 1.0 1 1 82.3 51.4 145 262-406 128-282 (852)
3 4fdd_A Transportin-1; heat rep 1.0 1 1 81.5 49.4 96 742-865 649-744 (852)
4 1b3u_A Protein (protein phosph 1.0 1 1 78.0 32.6 19 881-899 528-546 (588)
5 2bpt_A Importin beta-1 subunit 1.0 1 1 75.8 51.5 679 68-865 53-813 (861)
6 1qgr_A Protein (importin beta 1.0 1 1 74.3 49.3 226 626-867 582-831 (876)
7 1u6g_C TIP120 protein, CAND1; 1.0 1 1 74.2 47.3 213 65-294 57-287 (1230)
8 1u6g_C TIP120 protein, CAND1; 1.0 1 1 72.5 66.5 335 65-410 95-507 (1230)
9 2bpt_A Importin beta-1 subunit 1.0 1 1 69.3 52.5 140 269-411 102-255 (861)
10 2vgl_B AP-2 complex subunit be 1.0 1 1 68.0 21.5 127 624-758 298-426 (591)
No 1
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=89.16 Aligned_cols=288 Identities=14% Similarity=0.130 Sum_probs=110.0
Q ss_pred HHCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 10589820389999988788752199999991589999999998226998889987246999999997432532101698
Q 000609 64 LLKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE 143 (1393)
Q Consensus 64 LL~HkD~~Vr~~vAcCLadIlRI~APdAPytd~~LkdIF~l~v~ql~~L~d~~~p~f~q~~~lLe~la~vks~vl~~DL~ 143 (1393)
.|+|.|.++|..++-+|..+.+..-| +....++..++.... |. ++ .-+..+.+.|...-. .+.
T Consensus 18 ~l~s~~~~~R~~A~~~l~~i~~~~~~-----~~~~~~l~~~L~~~~----d~-~~--~vr~~~~~~L~~~~~-----~~~ 80 (588)
T 1b3u_A 18 ELRNEDVQLRLNSIKKLSTIALALGV-----ERTRSELLPFLTDTI----YD-ED--EVLLALAEQLGTFTT-----LVG 80 (588)
T ss_dssp HTTCSCHHHHHHHHHTHHHHHHHSCH-----HHHHHTHHHHHHHTC----CC-CH--HHHHHHHHHHTTCSG-----GGT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHHCH-----HHHHHHHHHHHHHHC----CC-CH--HHHHHHHHHHHHHHH-----CCC
T ss_conf 85062199999999719999998697-----989998998898755----78-58--999999999977876-----058
Q ss_pred CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCCCCHHH-H---HHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 4189999999999742389814099999999999960234465889-9---99999613798578999999999996554
Q 000609 144 CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESEDIQEDL-L---VILLSALGRNKNDTARRLAMNVIEQCAGK 219 (1393)
Q Consensus 144 ~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~iI~Ese~ip~~v-L---d~IL~~l~~~~~~~a~~lA~~ii~~~~dk 219 (1393)
..+....++..+....+ +....|.......|..+.... |.+. . -.++..+........+..|..++......
T Consensus 81 ~~~~~~~ll~~L~~l~~-~~~~~vR~~a~~~L~~l~~~~---~~~~~~~~l~~~l~~l~~~~~~~~R~~a~~~l~~~~~~ 156 (588)
T 1b3u_A 81 GPEYVHCLLPPLESLAT-VEETVVRDKAVESLRAISHEH---SPSDLEAHFVPLVKRLAGGDWFTSRTSACGLFSVCYPR 156 (588)
T ss_dssp SGGGGGGGHHHHHHHTT-SSCHHHHHHHHHHHHHHHTTS---CHHHHHHTHHHHHHHHHTCSSHHHHHHHGGGHHHHTTT
T ss_pred CHHHHHHHHHHHHHHHH-CCHHHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 59899998999999874-760799999999999999979---99999999999999985077717999999999999985
Q ss_pred HHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH
Q ss_conf 46999999997305999998873038899999984163134412321201235788689999999999862589987010
Q 000609 220 LEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE 299 (1393)
Q Consensus 220 L~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~aed~~~Rl~At~llG~mfs~~~~~~~~ 299 (1393)
+.. .....++|.+..-+..++..+|..|.+.+|.+...-+.. .
T Consensus 157 ~~~-----------------------------------~~~~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~~~~--~ 199 (588)
T 1b3u_A 157 VSS-----------------------------------AVKAELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELD--N 199 (588)
T ss_dssp SCH-----------------------------------HHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHH--H
T ss_pred CCH-----------------------------------HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHCHH--H
T ss_conf 699-----------------------------------999999999999848997889999999899999981677--6
Q ss_pred HCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH-CCCCC
Q ss_conf 03999999982006999129999999968877219999986789999987707953689999999999964321-58889
Q 000609 300 QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPSRADAPQILTALCDRLLDFDENVRKQVVAVICDVACHA-LNSIP 378 (1393)
Q Consensus 300 ~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~-l~~v~ 378 (1393)
..+.+...++.-.+|.++.||...+++.+.+....+.......+++.+...+.|.+++||.+++.+++.++... ...+.
T Consensus 200 ~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~~~~~ 279 (588)
T 1b3u_A 200 VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQEDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGPEITK 279 (588)
T ss_dssp HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCHHHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCHHHHH
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCCCCCH
T ss_conf 79999999998824992889998999999999857988888789999999806997789999999999999981952105
Q ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Q ss_conf 8889999976036892699999999999999
Q 000609 379 VETVKLVAERLRDKSVLVKRYTMERLADIFR 409 (1393)
Q Consensus 379 ~e~L~~l~eR~rDKK~~VR~eAi~~La~LY~ 409 (1393)
..++..+...+.|..+.||..|...|+.+-.
T Consensus 280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~ 310 (588)
T 1b3u_A 280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCE 310 (588)
T ss_dssp HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_conf 5899999998589958999999987999999
No 2
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=82.31 Aligned_cols=145 Identities=14% Similarity=0.172 Sum_probs=63.2
Q ss_pred HHHHHHCCCCCCCCHHHHHHHHHHHHHHHCCCCCCHHH-----HCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCCCC
Q ss_conf 12321201235788689999999999862589987010-----0399999998200699912999999996887721999
Q 000609 262 GVVPYLTGELLTDQLDTRLKAVGLVGDLFAVPGSANNE-----QFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTDPS 336 (1393)
Q Consensus 262 ~ViP~Le~eL~aed~~~Rl~At~llG~mfs~~~~~~~~-----~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~p~ 336 (1393)
..+|.|..-+.+++..+|..|..++|.++...+..+.. ....++..++.-+.|.++.||...+++...++...+.
T Consensus 128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~~ 207 (852)
T 4fdd_A 128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDSAEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRTQ 207 (852)
T ss_dssp THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHHTTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCHHHHCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCH
T ss_conf 99999999870999899999999999999985787563431332999999999985679789999999999999864638
Q ss_pred --CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC---CHHHHHHHHHHHCCCCHHHHHHHHHHHHH
Q ss_conf --99867899999877079536899999999999643215888---98889999976036892699999999999
Q 000609 337 --RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSI---PVETVKLVAERLRDKSVLVKRYTMERLAD 406 (1393)
Q Consensus 337 --~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v---~~e~L~~l~eR~rDKK~~VR~eAi~~La~ 406 (1393)
.....++++.+...+.|.|+.||.+++.++..++......+ -..++..+...+.|....||..|++.+..
T Consensus 208 ~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l~~l~~~l~~~~~~~~~~vr~~a~e~l~~ 282 (852)
T 4fdd_A 208 ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHMHNIVEYMLQRTQDQDENVALEACEFWLT 282 (852)
T ss_dssp HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGHHHHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
T ss_conf 799889999999998717997789999999999999857798998899999999987069968999999999999
No 3
>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*
Probab=1.00 E-value=1 Score=81.50 Aligned_cols=96 Identities=13% Similarity=0.152 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCHH
Q ss_conf 88999999933143313515789999998351356656778778777871467899999999999515987666432058
Q 000609 742 VLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKDAHIRPGID 821 (1393)
Q Consensus 742 ~L~sLa~Ia~~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W~d~s~~~~~Ki~aLK~Lvn~l~~~~~~~~~~~~~ 821 (1393)
....++.+++..+..|......+...+++.+ .. +..+.+..-+|++.-++..+-. ...+.+.
T Consensus 649 a~~~l~~l~~~~~~~~~~~l~~~lp~l~~~l--~~------------~~~~v~~~a~~alg~i~~~~~~----~~~p~~~ 710 (852)
T 4fdd_A 649 SFALLGDLTKACFQHVKPCIADFMPILGTNL--NP------------EFISVCNNATWAIGEISIQMGI----EMQPYIP 710 (852)
T ss_dssp HHHHHHHHHHHCGGGTGGGHHHHHHHHHHTC--CT------------TSHHHHHHHHHHHHHHHHHHGG----GGGGGTH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC------------CCHHHHHHHHHHHHHHHHHHHH----HHHHHHH
T ss_conf 9999999999816888987999999999876--94------------2068999999999999997117----6787899
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 89999999530376666778996677665699999999853104
Q 000609 822 DLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1393)
Q Consensus 822 ~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~lLKLA~~~ 865 (1393)
.++..|..++.. |. ....++-.|+.++-||++..
T Consensus 711 ~il~~L~~~l~~---------~~-~~~~~~~~a~~~igrl~~~~ 744 (852)
T 4fdd_A 711 MVLHQLVEIINR---------PN-TPKTLLENTAITIGRLGYVC 744 (852)
T ss_dssp HHHHHHHHHHTC---------SS-CCHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHCC---------CC-CCCHHHHHHHHHHHHHHHHC
T ss_conf 999999998579---------98-87207788999999999868
No 4
>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A
Probab=1.00 E-value=1 Score=77.97 Aligned_cols=19 Identities=0% Similarity=-0.057 Sum_probs=7.8
Q ss_pred CCCCCHHHHHHHHHHHHHH
Q ss_conf 4677356899999999986
Q 000609 881 PEISFPQAKKLFLSKVHQY 899 (1393)
Q Consensus 881 ~qD~~~~VR~~Fl~KL~k~ 899 (1393)
.+|+.++||..-+.-|...
T Consensus 528 l~d~~~~Vr~~a~~~l~~l 546 (588)
T 1b3u_A 528 AGDPVANVRFNVAKSLQKI 546 (588)
T ss_dssp GGCSCHHHHHHHHHHHHHH
T ss_pred CCCCCCHHHHHHHHHHHHH
T ss_conf 7899862799999999999
No 5
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=75.79 Aligned_cols=679 Identities=12% Similarity=0.120 Sum_probs=285.9
Q ss_pred CCCCHHHHHHHHHHHHHHHCCCC---------CC-CCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 98203899999887887521999---------99-991589999999998226998889987246999999997432532
Q 000609 68 QDKDVKLLVATCICEITRITAPE---------AP-YSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCV 137 (1393)
Q Consensus 68 kD~~Vr~~vAcCLadIlRI~APd---------AP-ytd~~LkdIF~l~v~ql~~L~d~~~p~f~q~~~lLe~la~vks~v 137 (1393)
.+..||.+.+..|-..++-+-+. .. .++++...|-..++..+. +++ +. -+..+-..++.+-
T Consensus 53 ~~~~vR~~A~~~lk~~i~~~w~~~~~~~~~~~~~~l~~~~~~~ik~~ll~~l~---~~~-~~--vr~~~~~~l~~i~--- 123 (861)
T 2bpt_A 53 TKLEGRILAALTLKNELVSKDSVKTQQFAQRWITQVSPEAKNQIKTNALTALV---SIE-PR--IANAAAQLIAAIA--- 123 (861)
T ss_dssp SCHHHHHHHHHHHHTTTCCSSHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHT---CSS-HH--HHHHHHHHHHHHH---
T ss_pred CCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHC---CCC-HH--HHHHHHHHHHHHH---
T ss_conf 98679999999987022575748789999767662999999999999999877---996-37--9999999999999---
Q ss_pred HCCCCCC---HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-------CCHHHHHHHHHHHCCCC-CHHHH
Q ss_conf 1016984---1899999999997423898140999999999999602344-------65889999999613798-57899
Q 000609 138 VMLDLEC---DELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-------IQEDLLVILLSALGRNK-NDTAR 206 (1393)
Q Consensus 138 l~~DL~~---~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~iI~Ese~-------ip~~vLd~IL~~l~~~~-~~~a~ 206 (1393)
..++|. .+++.. ++...+.+....+......++..+.++... .-..++..++..+.... +..-+
T Consensus 124 -~~~~p~~~w~~ll~~----L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~~ll~~l~~~l~~~~~~~~vr 198 (861)
T 2bpt_A 124 -DIELPHGAWPELMKI----MVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVR 198 (861)
T ss_dssp -HHHGGGTCCHHHHHH----HHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHH
T ss_pred -HHHCCCCCCHHHHHH----HHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHH
T ss_conf -846764554999999----999872689789999999999999972784356789889999999998415799987899
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 99999999965544699999999730599999887303889999998416313441232120123578868999999999
Q 000609 207 RLAMNVIEQCAGKLEAGIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQILSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1393)
Q Consensus 207 ~lA~~ii~~~~dkL~~~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~lL~~ViP~Le~eL~aed~~~Rl~At~ll 286 (1393)
..|.+.+..+...+... +.. . .. | .. +++.|..-+.+++..+|..|.+.+
T Consensus 199 ~~al~~l~~~~~~~~~~--------~~~-------~-~~-------~----~~---ll~~l~~~~~~~~~~~r~~a~~~l 248 (861)
T 2bpt_A 199 LAALNALADSLIFIKNN--------MER-------E-GE-------R----NY---LMQVVCEATQAEDIEVQAAAFGCL 248 (861)
T ss_dssp HHHHHHHHHHGGGCHHH--------HTS-------H-HH-------H----HH---HHHHHHHHHTCSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH--------CCC-------H-HH-------H----HH---HHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 99999999999999987--------067-------6-68-------9----99---999999986599889999999999
Q ss_pred HHHHCCCCCCHHHHCH-HHHHHHHHCCCCCCHHHHHHHHHHHHHHHHCC-------------CC--CC----CHHHHHHH
Q ss_conf 9862589987010039-99999982006999129999999968877219-------------99--99----86789999
Q 000609 287 GDLFAVPGSANNEQFH-SVFSEFLKRLTDRIVAVRMSVLEHVKSCLLTD-------------PS--RA----DAPQILTA 346 (1393)
Q Consensus 287 G~mfs~~~~~~~~~~~-~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~~~-------------p~--~~----~~~ei~~~ 346 (1393)
+++....+..+....+ .+|..++....|.+..||...+++...+.... |. .. ....+++.
T Consensus 249 ~~l~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ 328 (861)
T 2bpt_A 249 CKIMSKYYTFMKPYMEQALYALTIATMKSPNDKVASMTVEFWSTICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPN 328 (861)
T ss_dssp HHHHHHHGGGCHHHHHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
T ss_conf 99999988999998899999999998737727899999999999998788643332103577325699999999889999
Q ss_pred HHHHHCCCH-------HHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 987707953-------6899999999999643215888988899999760368926999999999999998632104998
Q 000609 347 LCDRLLDFD-------ENVRKQVVAVICDVACHALNSIPVETVKLVAERLRDKSVLVKRYTMERLADIFRGCCLRNFNGS 419 (1393)
Q Consensus 347 L~~rL~D~D-------ekVR~aaV~ai~~la~~~l~~v~~e~L~~l~eR~rDKK~~VR~eAi~~La~LY~~~~~~~~~~~ 419 (1393)
+...+.+.| ..||.++..++..++......+-..++..+.+.+.|..+.+|..|+..++.+-.....+
T Consensus 329 ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~~~~~~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~----- 403 (861)
T 2bpt_A 329 LLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGNHILEPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKV----- 403 (861)
T ss_dssp HHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHH-----
T ss_pred HHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHCCCCHH-----
T ss_conf 999987066530124686899999999999987408689999999998757997269999999999998599878-----
Q ss_pred CCHHCCCCCHHHHHHHHCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHH-H--HHHHHCCCHHHHHHHHHHHHHHHHHHHH
Q ss_conf 520001662588862320267785048998420686999997999999-9--9998129999999999999999999999
Q 000609 420 INQNEFEWIPGKILRCLYDKDFGSDTIESVLCGSLFPTGFSVKDRVRH-W--VRIFSGFDRIEMKALEKILEQKQRLQQE 496 (1393)
Q Consensus 420 ~~~~~~~wIP~~IL~~~Y~~d~~~~~ve~vl~e~LlP~~~~~~~R~~~-l--l~l~~~LD~~~~kal~~il~~k~~l~~~ 496 (1393)
.....+..|-..++..+. | .++..|... | ..+...+.+. + .....+...
T Consensus 404 ~~~~~l~~il~~l~~~l~--d------------------~~~~vr~~a~~~l~~l~~~~~~~-------~-~~~~~~~~~ 455 (861)
T 2bpt_A 404 QRTYYVHQALPSILNLMN--D------------------QSLQVKETTAWCIGRIADSVAES-------I-DPQQHLPGV 455 (861)
T ss_dssp HHHHHHHHHHHHHHHGGG--C------------------SCHHHHHHHHHHHHHHHHHHGGG-------S-CTTTTHHHH
T ss_pred HHHHHHHHHHHHHHHHCC--C------------------CCHHHHHHHHHHHHHHHHHHHHH-------C-CCHHHHHHH
T ss_conf 889989999999998828--9------------------95999999999999999873540-------4-878889999
Q ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHCCHHHHHHHHHHHC-CC--CCHHH-HHH
Q ss_conf 999999984413899389999999999998763399--4468899999884100879999999736-79--99998-999
Q 000609 497 MQRYLSLRQMHQDGDAPEIQKKILFCFRVMSRSFAE--PAKAEENFLILDQLKDANVWKILMNLLD-SN--TSFDQ-AFT 570 (1393)
Q Consensus 497 ~~~~l~l~~~~~~~d~~ei~~kl~~~i~~Ls~~fpD--~~Ka~~~L~kf~klnD~ri~klLk~~id-p~--td~~t-v~~ 570 (1393)
+..++... + +.+.+.......+..++..+++ +......+ ..+...+..+++ ++ .+.+. +..
T Consensus 456 l~~l~~~l---~--~~~~v~~~a~~al~~l~~~~~~~~~~~l~~~~--------~~il~~L~~~l~~~d~~~~vr~~a~~ 522 (861)
T 2bpt_A 456 VQACLIGL---Q--DHPKVATNCSWTIINLVEQLAEATPSPIYNFY--------PALVDGLIGAANRIDNEFNARASAFS 522 (861)
T ss_dssp HHHHHHHH---T--SCHHHHHHHHHHHHHHHHHHSSSSSCGGGGGH--------HHHHHHHHHHHTCSCCGGGHHHHHHH
T ss_pred HHHHHHHH---C--CCHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH--------HHHHHHHHHHHHCCCCCHHHHHHHHH
T ss_conf 99999976---4--47289999999999999862313542468999--------99999999998575861589999999
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHC-------C----CCHHHHHHHHHHHHHHHHHHC
Q ss_conf 99999999568987599999999851002556668999999999612-------6----301464788999999998529
Q 000609 571 GRDDLLKILGAKHRLYDFLSTLSMKCSYLLFNKEHVKEILLEVAAQK-------S----SANAQFMQSCMDILGILARFS 639 (1393)
Q Consensus 571 a~keLlkkL~~~~~l~d~l~~Ll~R~S~li~Nks~V~~Ll~~~~~~~-------~----~~~~~~~~~a~eLL~~IS~~~ 639 (1393)
+...+....+.. ...++. .-++.+++.+.... . +........+.+.|..+....
T Consensus 523 al~~l~~~~~~~--~~~~~~-------------~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~ 587 (861)
T 2bpt_A 523 ALTTMVEYATDT--VAETSA-------------SISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKS 587 (861)
T ss_dssp HHHHHHHHCCGG--GHHHHH-------------HHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHCCHH--HHHHHH-------------HHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 999999976265--699999-------------99999999999887532013885567779999999999999999985
Q ss_pred CCCCCCCHHHHHHH----HHHCCC-CCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHC
Q ss_conf 95734559999999----741021-0036699999986020476421056218999998840599588999999999621
Q 000609 640 PLLLGGTEEELVNL----LKEENE-IIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQAKYAVHALAAIT 714 (1393)
Q Consensus 640 P~lFk~~~~~L~~l----L~~~~~-~~~~~aL~iLa~~~~~~~e~~~~~~~~l~~~L~~lal~Gtp~qAK~Av~~Laa~~ 714 (1393)
+.-+..+.+.+... +...+. .+.+.++..+........+.+.+.-..+.+.|.+......+.....|+.++..+.
T Consensus 588 ~~~~~~~~~~l~~~l~~~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~ 667 (861)
T 2bpt_A 588 PSSVEPVADMLMGLFFRLLEKKDSAFIEDDVFYAISALAASLGKGFEKYLETFSPYLLKALNQVDSPVSITAVGFIADIS 667 (861)
T ss_dssp GGGTGGGHHHHHHHHHHHHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
T ss_conf 56347899999999999974678875799999999999999766099999999999998865566789999999999999
Q ss_pred CCCCCC---HHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 787321---3999999999862115----998438899999993314331351578999999835135665677877877
Q 000609 715 KDDGLK---SLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKSKILRCSNKIRNDTKACW 787 (1393)
Q Consensus 715 ~~~~~~---~~~~L~~~Lv~~L~~~----~~l~~~L~sLa~Ia~~ap~vfe~~~~eI~~fiik~ILl~~~~~~~~~~~~W 787 (1393)
..-+.. ....++..+...+... .--...+.++|.|++..+..|......+...+++-+-..+ +. ++.++
T Consensus 668 ~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~l~~~l~~l~~~~~~~~---~~-~d~d~ 743 (861)
T 2bpt_A 668 NSLEEDFRRYSDAMMNVLAQMISNPNARRELKPAVLSVFGDIASNIGADFIPYLNDIMALCVAAQNTKP---EN-GTLEA 743 (861)
T ss_dssp HHTGGGGHHHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCCC---SS-SSHHH
T ss_pred HHHCHHCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---CC-CCHHH
T ss_conf 874540311199999999997278655676659999999999998405089999999999999973678---99-97588
Q ss_pred CCCHHHHHHHHHHHHHHHHHHCCCCC--CCCCCCHHHHHHHHHHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 78714678999999999995159876--6643205889999999530376666778996677665699999999853104
Q 000609 788 DDRSELCLLKIYGIKTLVKSYLPVKD--AHIRPGIDDLLGILKSMLSYGEMSEDIESSSVDKAHLRLASAKAVLRLSRQW 865 (1393)
Q Consensus 788 ~d~s~~~~~Ki~aLK~Lvn~l~~~~~--~~~~~~~~~ll~lL~~il~~GEi~~~~~tp~~~ksrLRLaAa~~lLKLA~~~ 865 (1393)
. ......+..+++++...+....+ ....+.+..++.+|...+...+ ..+...+|-+|..++-.|++.+
T Consensus 744 ~--~~~~~vr~~~l~~~~~i~~~l~~~~~~~~~~~~~i~~~l~~~~~d~~--------~~~~~~vr~~a~~~l~~l~~~~ 813 (861)
T 2bpt_A 744 L--DYQIKVLEAVLDAYVGIVAGLHDKPEALFPYVGTIFQFIAQVAEDPQ--------LYSEDATSRAAVGLIGDIAAMF 813 (861)
T ss_dssp H--HHHHHHHHHHHHHHHHHHHHTTTCHHHHGGGHHHHHHHHHHHHHCHH--------HHTSHHHHHHHHHHHHHHHHHC
T ss_pred H--HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCC--------CCCCHHHHHHHHHHHHHHHHHC
T ss_conf 9--99999999999999999999826778899999999999999874855--------5786999999999999999882
No 6
>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A
Probab=1.00 E-value=1 Score=74.32 Aligned_cols=226 Identities=11% Similarity=0.059 Sum_probs=103.8
Q ss_pred HHHHHHHHHHHHHCC-CCCCCCHHHHHHH----HHHCC--CCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCC
Q ss_conf 889999999985299-5734559999999----74102--1003669999998602047642105621899999884059
Q 000609 626 QSCMDILGILARFSP-LLLGGTEEELVNL----LKEEN--EIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEG 698 (1393)
Q Consensus 626 ~~a~eLL~~IS~~~P-~lFk~~~~~L~~l----L~~~~--~~~~~~aL~iLa~~~~~~~e~~~~~~~~l~~~L~~lal~G 698 (1393)
..+...|..+....+ .-|..+...++.. +...+ ..+.+.++.++..........+.+.-..+.+.|.......
T Consensus 582 ~~~~~~l~~l~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~v~~~a~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~~~ 661 (876)
T 1qgr_A 582 SLLCATLQNVLRKVQHQDALQISDVVMASLLRMFQSTAGSGGVQEDALMAVSTLVEVLGGEFLKYMEAFKPFLGIGLKNY 661 (876)
T ss_dssp HHHHHHHHHHHTTSCHHHHHTTHHHHHHHHHHHC-----CCHHHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_conf 99999999999982854205789999999999998536888850899999999999987609999999999999987586
Q ss_pred -CHHHHHHHHHHHHHHCCCCCC---CHHHHHHHHHHHHHHHC----CCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHH
Q ss_conf -958899999999962178732---13999999999862115----9984388999999933143313515789999998
Q 000609 699 -SRRQAKYAVHALAAITKDDGL---KSLSVLYKRLVDMLEEK----THLPAVLQSLGCIAQTAMPVFETRESEIEEFIKS 770 (1393)
Q Consensus 699 -tp~qAK~Av~~Laa~~~~~~~---~~~~~L~~~Lv~~L~~~----~~l~~~L~sLa~Ia~~ap~vfe~~~~eI~~fiik 770 (1393)
.+..-+.|+.+|+.+...-+. .....++..+...+... .-....+.++|.|+...+..|......+...+.+
T Consensus 662 ~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~~~~~~~~~l~~i~~~~g~~~~~~l~~~~~~l~~ 741 (876)
T 1qgr_A 662 AEYQVCLAAVGLVGDLCRALQSNIIPFCDEVMQLLLENLGNENVHRSVKPQILSVFGDIALAIGGEFKKYLEVVLNTLQQ 741 (876)
T ss_dssp TTHHHHHHHHHHHHHHHHHHGGGGHHHHHHHHHHHHHHHTCTTSCGGGHHHHHHHHHHHHHHHGGGGGGGHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHH
T ss_conf 50879999999999999988785464599999999997487123387639999999999997035279999999999999
Q ss_pred HHHCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHCCCCC---------CCCCCCHHHHHHHHHHHHCCCCCCCCCC
Q ss_conf 3513566567787787778714678999999999995159876---------6643205889999999530376666778
Q 000609 771 KILRCSNKIRNDTKACWDDRSELCLLKIYGIKTLVKSYLPVKD---------AHIRPGIDDLLGILKSMLSYGEMSEDIE 841 (1393)
Q Consensus 771 ~ILl~~~~~~~~~~~~W~d~s~~~~~Ki~aLK~Lvn~l~~~~~---------~~~~~~~~~ll~lL~~il~~GEi~~~~~ 841 (1393)
-+ ... . + .++++|.+. ....+...++++...+.+... ....+.+..++.++..+.. + +
T Consensus 742 ~~-~~~-~-~-~~d~~~~~~--~~~~r~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~------~-~ 808 (876)
T 1qgr_A 742 AS-QAQ-V-D-KSDYDMVDY--LNELRESCLEAYTGIVQGLKGDQENVHPDVMLVQPRVEFILSFIDHIAG------D-E 808 (876)
T ss_dssp HH-TCC-C-C-TTCHHHHHH--HHHHHHHHHHHHHHHHHHHHCSSSSCCGGGGGSGGGHHHHHHHHHHHHT------C-S
T ss_pred HH-HCC-C-C-CCCHHHHHH--HHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHC------C-C
T ss_conf 98-555-8-9-997588999--9999999999999999997457555554388999999999999999865------8-8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 99667766569999999985310488
Q 000609 842 SSSVDKAHLRLASAKAVLRLSRQWDH 867 (1393)
Q Consensus 842 tp~~~ksrLRLaAa~~lLKLA~~~d~ 867 (1393)
. .-...|-.|..++=.|+..+..
T Consensus 809 ~---~~~~vr~~a~~~l~~l~~~~~~ 831 (876)
T 1qgr_A 809 D---HTDGVVACAAGLIGDLCTAFGK 831 (876)
T ss_dssp C---CCHHHHHHHHHHHHHHHHHHCT
T ss_pred C---CCHHHHHHHHHHHHHHHHHHCC
T ss_conf 8---8889999999999999988284
No 7
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=74.23 Aligned_cols=213 Identities=14% Similarity=0.147 Sum_probs=82.9
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCCCC-
Q ss_conf 0589820389999988788752199999991589999999998226998889987246999999997432532101698-
Q 000609 65 LKHQDKDVKLLVATCICEITRITAPEAPYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLDLE- 143 (1393)
Q Consensus 65 L~HkD~~Vr~~vAcCLadIlRI~APdAPytd~~LkdIF~l~v~ql~~L~d~~~p~f~q~~~lLe~la~vks~vl~~DL~- 143 (1393)
|.+++..||..++-||..+..-+ |+ .++..|+..++..+ .|++.. . +......++.+-.. +.-+
T Consensus 57 L~d~~~~vR~~A~~~L~~l~~~~-~~-----~~~~~i~~~Ll~~l---~d~~~~--v-R~~a~~~L~~i~~~---l~~~~ 121 (1230)
T 1u6g_C 57 LEDKNGEVQNLAVKCLGPLVSKV-KE-----YQVETIVDTLCTNM---LSDKEQ--L-RDISSIGLKTVIGE---LPPAS 121 (1230)
T ss_dssp TTCSSHHHHHHHHHHHHHHHTTS-CH-----HHHHHHHHHHHHHT---TCSSSH--H-HHHHHHHHHHHHHH---CC---
T ss_pred HCCCCHHHHHHHHHHHHHHHHHC-CH-----HHHHHHHHHHHHHH---CCCCHH--H-HHHHHHHHHHHHHH---CCCCC
T ss_conf 66999899999999999999758-79-----89999999999986---698388--9-99999999999996---79744
Q ss_pred -----CHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCCC-C---CHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q ss_conf -----41899999999997423898140999999999999602344-6---58899999996137985789999999999
Q 000609 144 -----CDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESED-I---QEDLLVILLSALGRNKNDTARRLAMNVIE 214 (1393)
Q Consensus 144 -----~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~iI~Ese~-i---p~~vLd~IL~~l~~~~~~~a~~lA~~ii~ 214 (1393)
......+++..++....++....+......++..+++.... + -.+++..++..+... ...-+.-|...+.
T Consensus 122 ~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~~~~ll~~l~~~L~~~-~~~vR~~a~~al~ 200 (1230)
T 1u6g_C 122 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSP-RLAVRKRTIIALG 200 (1230)
T ss_dssp --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCS-SHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHH
T ss_conf 444117889999999999987578846799999999999999827677887999999999987599-6899999999999
Q ss_pred HHHHHHHH----HHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHCCHH----HHHHHHHHCCCCCCCCHHHHHHHHHHH
Q ss_conf 96554469----9999999730599999887303889999998416313----441232120123578868999999999
Q 000609 215 QCAGKLEA----GIKQFLVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQI----LSGVVPYLTGELLTDQLDTRLKAVGLV 286 (1393)
Q Consensus 215 ~~~dkL~~----~i~q~f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~l----L~~ViP~Le~eL~aed~~~Rl~At~ll 286 (1393)
..+..+.. .+-.++...+..+.. ......+-+.+..|.+..|.. +..++|.+-..+..++..+|..|.+.+
T Consensus 201 ~l~~~~~~~~~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~l~~l~~~ll~~l~d~~~~vR~~a~~~l 279 (1230)
T 1u6g_C 201 HLVMSCGNIVFVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEYLEKIIPLVVKFCNVDDDELREYCIQAF 279 (1230)
T ss_dssp HHTTTC----CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTSCTTHHHHHHHHHSSCCTTTHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
T ss_conf 999856899999999999998616775-5689999999999999868989988999999999986689778999999999
Q ss_pred HHHHCCCC
Q ss_conf 98625899
Q 000609 287 GDLFAVPG 294 (1393)
Q Consensus 287 G~mfs~~~ 294 (1393)
|.+...-+
T Consensus 280 ~~l~~~~~ 287 (1230)
T 1u6g_C 280 ESFVRRCP 287 (1230)
T ss_dssp HHHHHCTT
T ss_pred HHHHHHCH
T ss_conf 99999784
No 8
>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A
Probab=1.00 E-value=1 Score=72.52 Aligned_cols=335 Identities=15% Similarity=0.138 Sum_probs=209.6
Q ss_pred HCCCCCCHHHHHHHHHHHHHHHCCCC---CCCCHHHHHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 05898203899999887887521999---999915899999999982269988899872469999999974325321016
Q 000609 65 LKHQDKDVKLLVATCICEITRITAPE---APYSDDVLKDIFQLIVGTFSGLKDTGGPSFGRRVVILETLAKYRSCVVMLD 141 (1393)
Q Consensus 65 L~HkD~~Vr~~vAcCLadIlRI~APd---APytd~~LkdIF~l~v~ql~~L~d~~~p~f~q~~~lLe~la~vks~vl~~D 141 (1393)
|.+.+..||.-++-||..|.....|+ ..+......+++..++..+.. ++....+.+.++.+.++-... --.
T Consensus 95 l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~-----~~~~~~~~~al~~l~~~~~~~-~~~ 168 (1230)
T 1u6g_C 95 MLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAK-----QEDVSVQLEALDIMADMLSRQ-GGL 168 (1230)
T ss_dssp TTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSC-----CSCHHHHHHHHHHHHHHHHHT-CSS
T ss_pred HCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCC-----CCCHHHHHHHHHHHHHHHHHH-HHH
T ss_conf 66983889999999999999967974444411788999999999998757-----884679999999999999982-767
Q ss_pred CCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCC-CCCHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHH
Q ss_conf 984189999999999742389814099999999999960234-465889999999613798----578999999999996
Q 000609 142 LECDELVNEMYSTFFAVASDDHPESVLSSMQTIMIVLLEESE-DIQEDLLVILLSALGRNK----NDTARRLAMNVIEQC 216 (1393)
Q Consensus 142 L~~~~Li~~lF~~ff~~v~~~~~~~v~~~m~~IL~~iI~Ese-~ip~~vLd~IL~~l~~~~----~~~a~~lA~~ii~~~ 216 (1393)
+. ..+.+++..++....+.+ ..|.......+..++...+ ..-..++..++..+.... ...+...-..++...
T Consensus 169 l~--~~~~~ll~~l~~~L~~~~-~~vR~~a~~al~~l~~~~~~~~~~~~l~~l~~~L~~~~~~~~r~~a~~~l~~l~~~~ 245 (1230)
T 1u6g_C 169 LV--NFHPSILTCLLPQLTSPR-LAVRKRTIIALGHLVMSCGNIVFVDLIEHLLSELSKNDSMSTTRTYIQCIAAISRQA 245 (1230)
T ss_dssp CT--TTHHHHHHHHGGGGGCSS-HHHHHHHHHHHHHHTTTC----CTTHHHHHHHHHHHTCSSCSCTTHHHHHHHHHHHS
T ss_pred HH--HHHHHHHHHHHHHHCCCC-HHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 78--879999999999875996-899999999999999856899999999999998616775568999999999999986
Q ss_pred HHHHHHHHHHH---HHHHHCCCCCCCCCCHHHHHHHHHHHHHCCH----HHHHHHHHHCCCCCCC---------------
Q ss_conf 55446999999---9973059999988730388999999841631----3441232120123578---------------
Q 000609 217 AGKLEAGIKQF---LVSSMSGDSRPGHSHIDYHEVIYDVYRCSPQ----ILSGVVPYLTGELLTD--------------- 274 (1393)
Q Consensus 217 ~dkL~~~i~q~---f~~~l~~d~~~~~~~~~~h~Li~eL~~~~P~----lL~~ViP~Le~eL~ae--------------- 274 (1393)
.+.+.+++.+. +...+..++. .-...+...+-.+.+.+|+ .+..++|.+-.-+..+
T Consensus 246 ~~~~~~~l~~l~~~ll~~l~d~~~--~vR~~a~~~l~~l~~~~~~~~~~~l~~li~~ll~~l~~d~~~~~~~d~~~~~~~ 323 (1230)
T 1u6g_C 246 GHRIGEYLEKIIPLVVKFCNVDDD--ELREYCIQAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAM 323 (1230)
T ss_dssp SGGGTTSCTTHHHHHHHHHSSCCT--TTHHHHHHHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC---------------
T ss_pred HHHHHHHHHHHHHHHHHHHCCCCH--HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCC
T ss_conf 898998899999999998668977--899999999999999784877776899999999982789988876441101122
Q ss_pred ----------------------CHHHHHHHHHHHHHHHCCCCCCHHHHCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf ----------------------8689999999999862589987010039999999820069991299999999688772
Q 000609 275 ----------------------QLDTRLKAVGLVGDLFAVPGSANNEQFHSVFSEFLKRLTDRIVAVRMSVLEHVKSCLL 332 (1393)
Q Consensus 275 ----------------------d~~~Rl~At~llG~mfs~~~~~~~~~~~~~w~~fL~R~~D~s~~VR~~~v~~~~~iL~ 332 (1393)
...+|..|..+++.+....+..+..-++.+...++.++.|....||...++....++.
T Consensus 324 ~~~~~~~~~~~~~~~~~~~~d~~~~vR~~A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l~d~~~~Vr~~a~~~l~~l~~ 403 (1230)
T 1u6g_C 324 DADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKCLDAVVSTRHEMLPEFYKTVSPALISRFKEREENVKADVFHAYLSLLK 403 (1230)
T ss_dssp ---------------------CTTHHHHHHHHHHHHHHTTCCTTHHHHHTTTHHHHHSTTSCSSSHHHHHHHHHHHHHHH
T ss_pred CCCCCCCCHHHCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
T ss_conf 33446530110013666455567799999999999999746667999999998999987179865799999999999999
Q ss_pred CCCC---------------------CCCHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHCCCCC---HHHHHHHHHH
Q ss_conf 1999---------------------998678999998770795368999999999996432158889---8889999976
Q 000609 333 TDPS---------------------RADAPQILTALCDRLLDFDENVRKQVVAVICDVACHALNSIP---VETVKLVAER 388 (1393)
Q Consensus 333 ~~p~---------------------~~~~~ei~~~L~~rL~D~DekVR~aaV~ai~~la~~~l~~v~---~e~L~~l~eR 388 (1393)
.... ....+.+++.+...|.|.+++||.+++.+++.+.......+. ..++..+...
T Consensus 404 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~l~~~l~~~~~~vr~~~~~~L~~l~~~~~~~l~~~l~~ll~~l~~~ 483 (1230)
T 1u6g_C 404 QTRPVQSWLCDPDAMEQGETPLTMLQSQVPNIVKALHKQMKEKSVKTRQCCFNMLTELVNVLPGALTQHIPVLVPGIIFS 483 (1230)
T ss_dssp HHCCC------------CCCHHHHHHHHTTHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHSTTTTGGGHHHHHHHHHHH
T ss_pred HHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_conf 72424343467520135645599999874699999999861377879999999999999976110577799999999999
Q ss_pred HCCCCH--HHHHHHHHHHHHHHHH
Q ss_conf 036892--6999999999999998
Q 000609 389 LRDKSV--LVKRYTMERLADIFRG 410 (1393)
Q Consensus 389 ~rDKK~--~VR~eAi~~La~LY~~ 410 (1393)
+.|++. .||.+|+..++.+...
T Consensus 484 L~d~~~~~~v~~~a~~~l~~~~~~ 507 (1230)
T 1u6g_C 484 LNDKSSSSNLKIDALSCLYVILCN 507 (1230)
T ss_dssp TTCSSSCHHHHHHHHHHHHHHHHS
T ss_pred HCCCCCCCHHHHHHHHHHHHHHHH
T ss_conf 748788516899999999999983
No 9
>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A
Probab=1.00 E-value=1 Score=69.34 Aligned_cols=140 Identities=11% Similarity=0.104 Sum_probs=58.3
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCCHH-HHCHHHHHHHHHCCCCC-CHHHHHHHHHHHHHHHHCCC-C----CCCHH
Q ss_conf 123578868999999999986258998701-00399999998200699-91299999999688772199-9----99867
Q 000609 269 GELLTDQLDTRLKAVGLVGDLFAVPGSANN-EQFHSVFSEFLKRLTDR-IVAVRMSVLEHVKSCLLTDP-S----RADAP 341 (1393)
Q Consensus 269 ~eL~aed~~~Rl~At~llG~mfs~~~~~~~-~~~~~~w~~fL~R~~D~-s~~VR~~~v~~~~~iL~~~p-~----~~~~~ 341 (1393)
.-|..++..+|..+...++.++..- +. ...|.+...++....+. ++.+|...+.....+...-. . .....
T Consensus 102 ~~l~~~~~~vr~~~~~~l~~i~~~~---~p~~~w~~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~~~ 178 (861)
T 2bpt_A 102 TALVSIEPRIANAAAQLIAAIADIE---LPHGAWPELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSN 178 (861)
T ss_dssp HHHTCSSHHHHHHHHHHHHHHHHHH---GGGTCCHHHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHH
T ss_pred HHHCCCCHHHHHHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
T ss_conf 9877996379999999999999846---7645549999999998726897899999999999999727843567898899
Q ss_pred HHHHHHHHHHCCC--HHHHHHHHHHHHHHHHHH---HCCC--CCHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
Q ss_conf 8999998770795--368999999999996432---1588--89888999997603689269999999999999986
Q 000609 342 QILTALCDRLLDF--DENVRKQVVAVICDVACH---ALNS--IPVETVKLVAERLRDKSVLVKRYTMERLADIFRGC 411 (1393)
Q Consensus 342 ei~~~L~~rL~D~--DekVR~aaV~ai~~la~~---~l~~--v~~e~L~~l~eR~rDKK~~VR~eAi~~La~LY~~~ 411 (1393)
.++..+...+.|+ +..||.+++++++.+... .+.. ....++..+.+.+.|..+.||+.|+..|+.+...+
T Consensus 179 ~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~ 255 (861)
T 2bpt_A 179 NILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKY 255 (861)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 99999998415799987899999999999999999870676689999999999865998899999999999999998
No 10
>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B
Probab=1.00 E-value=1 Score=68.02 Aligned_cols=127 Identities=13% Similarity=0.138 Sum_probs=76.8
Q ss_pred HHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHHHCCHHHHHHCCCCHHHHHHHHHHHCCCHHHH
Q ss_conf 47889999999985299573455999999974102100366999999860204764210562189999988405995889
Q 000609 624 FMQSCMDILGILARFSPLLLGGTEEELVNLLKEENEIIKEGILHVLAKAGGTIREQLAATSSSVDLLLERLCLEGSRRQA 703 (1393)
Q Consensus 624 ~~~~a~eLL~~IS~~~P~lFk~~~~~L~~lL~~~~~~~~~~aL~iLa~~~~~~~e~~~~~~~~l~~~L~~lal~Gtp~qA 703 (1393)
..-.+.+-|..+...+|..|..+...+.... +++..+...++.+|++.+.. ++. ..+...|..+.....+.-.
T Consensus 298 vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~-~d~~~Ir~~al~~L~~l~~~--~nv----~~iv~~L~~~l~~~d~~~r 370 (591)
T 2vgl_B 298 VQYVALRNINLIVQKRPEILKQEIKVFFVKY-NDPIYVKLEKLDIMIRLASQ--ANI----AQVLAELKEYATEVDVDFV 370 (591)
T ss_dssp HHHHHHHHHHHHHHHCCSTTTTCTTTTSCCT-TSCHHHHHHHHHHHHHTCCS--STH----HHHHHHHHHHTTSSCHHHH
T ss_pred HHHHHHHHHHHHHHHCHHHHHHHHHHHEECC-CCHHHHHHHHHHHHHHHCCH--HHH----HHHHHHHHHHHHCCCHHHH
T ss_conf 8999999999999869698999887550036-99399999999999987786--239----9999999999865799999
Q ss_pred HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHCCC--CCHHHHHHHHHHHHCCCCCC
Q ss_conf 99999999621787321399999999986211599--84388999999933143313
Q 000609 704 KYAVHALAAITKDDGLKSLSVLYKRLVDMLEEKTH--LPAVLQSLGCIAQTAMPVFE 758 (1393)
Q Consensus 704 K~Av~~Laa~~~~~~~~~~~~L~~~Lv~~L~~~~~--l~~~L~sLa~Ia~~ap~vfe 758 (1393)
+.|+++|+.++..-. .....++..+++.+....+ ....+.++..|.+..|...+
T Consensus 371 ~~~v~aI~~la~~~~-~~~~~~v~~Ll~ll~~~~~~v~~e~i~~l~~ii~~~p~~~~ 426 (591)
T 2vgl_B 371 RKAVRAIGRCAIKVE-QSAERCVSTLLDLIQTKVNYVVQEAIVVIRDIFRKYPNKYE 426 (591)
T ss_dssp HHHHHHHHHHHTTCH-HHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHSCSSCC
T ss_pred HHHHHHHHHHHHHCH-HHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHCCCHHH
T ss_conf 999999999998574-67999999999998355168999999999999997920578
Done!