Query 000610
Match_columns 1392
No_of_seqs 256 out of 1645
Neff 3.5
Searched_HMMs 46136
Date Mon Apr 1 20:35:12 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000610.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000610hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0297 TNF receptor-associate 99.6 1.8E-15 3.8E-20 174.4 5.8 153 1-164 7-162 (391)
2 COG5432 RAD18 RING-finger-cont 99.3 4.8E-12 1E-16 139.4 6.2 175 3-180 11-228 (391)
3 TIGR00599 rad18 DNA repair pro 99.2 3.9E-11 8.4E-16 139.0 9.3 70 7-78 16-85 (397)
4 KOG0287 Postreplication repair 99.1 1.6E-11 3.5E-16 137.4 1.3 138 3-146 9-190 (442)
5 smart00504 Ubox Modified RING 99.0 6.3E-10 1.4E-14 96.6 5.3 62 17-84 1-62 (63)
6 KOG3002 Zn finger protein [Gen 98.9 3.9E-09 8.6E-14 118.9 8.0 113 14-139 45-161 (299)
7 PLN03208 E3 ubiquitin-protein 98.8 2.3E-09 5E-14 114.2 4.3 58 13-72 14-87 (193)
8 KOG0320 Predicted E3 ubiquitin 98.8 1.8E-09 3.9E-14 113.3 3.2 56 15-70 129-184 (187)
9 PF04564 U-box: U-box domain; 98.8 3.1E-09 6.7E-14 96.9 3.8 66 14-85 1-67 (73)
10 KOG0823 Predicted E3 ubiquitin 98.7 9.5E-09 2E-13 111.6 2.6 56 15-72 45-103 (230)
11 PF15227 zf-C3HC4_4: zinc fing 98.6 2.4E-08 5.2E-13 83.1 2.9 38 20-59 1-42 (42)
12 PF13923 zf-C3HC4_2: Zinc fing 98.5 9.1E-08 2E-12 77.6 2.9 38 20-59 1-39 (39)
13 KOG2177 Predicted E3 ubiquitin 98.4 8.2E-08 1.8E-12 99.2 2.2 48 12-61 8-55 (386)
14 PF13920 zf-C3HC4_3: Zinc fing 98.4 1.7E-07 3.8E-12 79.5 3.3 47 16-64 1-48 (50)
15 PHA02929 N1R/p28-like protein; 98.4 2E-07 4.2E-12 102.6 4.3 50 14-64 171-227 (238)
16 PF13639 zf-RING_2: Ring finge 98.3 1.9E-07 4.2E-12 77.2 2.1 42 19-60 2-44 (44)
17 PF14835 zf-RING_6: zf-RING of 98.3 8.3E-08 1.8E-12 87.0 -0.9 61 13-81 3-64 (65)
18 KOG0317 Predicted E3 ubiquitin 98.3 3.5E-07 7.5E-12 102.2 2.6 51 16-68 238-288 (293)
19 KOG2164 Predicted E3 ubiquitin 98.2 3.3E-07 7.2E-12 108.3 1.8 58 17-76 186-248 (513)
20 KOG0825 PHD Zn-finger protein 98.2 1.4E-07 3E-12 114.3 -1.8 125 16-151 122-264 (1134)
21 TIGR00570 cdk7 CDK-activating 98.2 9.8E-07 2.1E-11 100.1 4.9 68 16-83 2-73 (309)
22 cd00162 RING RING-finger (Real 98.2 1.3E-06 2.9E-11 69.2 3.7 42 19-62 1-44 (45)
23 PF00097 zf-C3HC4: Zinc finger 98.2 1.2E-06 2.6E-11 71.0 3.1 38 20-59 1-41 (41)
24 KOG0311 Predicted E3 ubiquitin 98.1 2.1E-07 4.4E-12 106.1 -3.5 56 7-64 33-90 (381)
25 PHA02926 zinc finger-like prot 98.1 2.2E-06 4.8E-11 93.4 3.0 53 13-65 166-231 (242)
26 KOG2660 Locus-specific chromos 98.0 1.7E-06 3.7E-11 98.2 1.1 57 7-65 5-62 (331)
27 smart00184 RING Ring finger. E 98.0 7.1E-06 1.5E-10 62.8 3.5 38 20-59 1-39 (39)
28 KOG0978 E3 ubiquitin ligase in 97.9 2.1E-06 4.6E-11 105.3 -0.2 56 13-70 639-695 (698)
29 COG5222 Uncharacterized conser 97.9 6.2E-06 1.4E-10 92.4 3.4 64 18-83 275-341 (427)
30 PF14634 zf-RING_5: zinc-RING 97.8 1.2E-05 2.6E-10 67.1 3.1 43 19-61 1-44 (44)
31 PF13445 zf-RING_UBOX: RING-ty 97.8 1.2E-05 2.6E-10 67.9 2.6 35 20-57 1-43 (43)
32 COG5574 PEX10 RING-finger-cont 97.7 1.3E-05 2.9E-10 89.0 2.6 50 15-66 213-264 (271)
33 PF12678 zf-rbx1: RING-H2 zinc 97.6 6.5E-05 1.4E-09 69.3 3.8 41 20-60 22-73 (73)
34 COG5152 Uncharacterized conser 97.4 7.5E-05 1.6E-09 80.4 2.4 61 17-84 196-256 (259)
35 KOG0802 E3 ubiquitin ligase [P 97.4 7.3E-05 1.6E-09 90.6 2.0 47 16-64 290-341 (543)
36 KOG4159 Predicted E3 ubiquitin 97.2 0.00022 4.8E-09 84.0 3.2 51 13-65 80-130 (398)
37 KOG4628 Predicted E3 ubiquitin 97.0 0.00037 8E-09 80.8 3.2 49 18-66 230-280 (348)
38 COG5243 HRD1 HRD ubiquitin lig 97.0 0.00042 9.1E-09 80.1 3.5 53 15-67 285-348 (491)
39 KOG1813 Predicted E3 ubiquitin 96.9 0.00042 9.1E-09 78.4 2.0 44 18-63 242-285 (313)
40 KOG3039 Uncharacterized conser 96.9 0.00053 1.1E-08 76.0 2.5 53 15-69 219-275 (303)
41 COG5540 RING-finger-containing 96.9 0.00055 1.2E-08 77.7 2.6 49 16-64 322-372 (374)
42 KOG2879 Predicted E3 ubiquitin 96.7 0.001 2.2E-08 74.9 3.4 48 15-64 237-287 (298)
43 PF11789 zf-Nse: Zinc-finger o 96.7 0.00069 1.5E-08 60.4 1.6 45 12-58 6-53 (57)
44 PLN03086 PRLI-interacting fact 96.7 0.0011 2.4E-08 81.0 3.9 83 54-151 454-548 (567)
45 KOG1002 Nucleotide excision re 96.7 0.00065 1.4E-08 81.1 1.7 52 13-66 532-588 (791)
46 PF12861 zf-Apc11: Anaphase-pr 96.6 0.0014 3E-08 63.0 3.0 52 14-65 18-83 (85)
47 KOG0824 Predicted E3 ubiquitin 96.5 0.0013 2.9E-08 74.7 2.1 48 17-66 7-55 (324)
48 PF03145 Sina: Seven in absent 96.4 0.00041 8.8E-09 73.9 -2.3 67 75-143 3-73 (198)
49 PLN03086 PRLI-interacting fact 96.4 0.0048 1E-07 75.7 6.2 91 55-155 409-515 (567)
50 KOG1814 Predicted E3 ubiquitin 96.3 0.0015 3.2E-08 76.8 1.3 85 14-100 181-285 (445)
51 PF04641 Rtf2: Rtf2 RING-finge 96.2 0.0033 7.1E-08 70.2 3.6 59 14-73 110-170 (260)
52 KOG4265 Predicted E3 ubiquitin 96.2 0.0035 7.6E-08 72.7 3.3 47 16-64 289-336 (349)
53 PF07800 DUF1644: Protein of u 96.1 0.0024 5.2E-08 67.3 1.7 85 16-110 1-129 (162)
54 KOG1785 Tyrosine kinase negati 96.0 0.0023 5.1E-08 74.7 1.1 46 19-66 371-418 (563)
55 KOG1039 Predicted E3 ubiquitin 95.9 0.0039 8.4E-08 72.6 2.3 48 15-64 159-221 (344)
56 PF02176 zf-TRAF: TRAF-type zi 95.9 0.0011 2.4E-08 57.7 -1.6 40 108-149 1-43 (60)
57 COG5175 MOT2 Transcriptional r 95.7 0.0057 1.2E-07 70.5 2.6 53 15-68 13-68 (480)
58 KOG4172 Predicted E3 ubiquitin 95.5 0.0033 7.2E-08 56.4 -0.3 45 18-64 8-54 (62)
59 KOG0804 Cytoplasmic Zn-finger 95.5 0.0038 8.1E-08 74.1 0.0 47 14-64 172-222 (493)
60 KOG0828 Predicted E3 ubiquitin 95.4 0.0075 1.6E-07 72.1 2.2 51 14-64 568-634 (636)
61 COG5236 Uncharacterized conser 95.3 0.0051 1.1E-07 71.0 0.2 47 14-62 58-106 (493)
62 KOG1734 Predicted RING-contain 95.1 0.0072 1.6E-07 68.1 0.8 52 15-66 222-283 (328)
63 KOG3800 Predicted E3 ubiquitin 95.1 0.017 3.7E-07 65.8 3.5 64 19-82 2-69 (300)
64 COG5219 Uncharacterized conser 95.0 0.0077 1.7E-07 76.0 0.5 51 14-64 1466-1523(1525)
65 PF02176 zf-TRAF: TRAF-type zi 94.5 0.01 2.3E-07 51.7 -0.0 51 82-136 5-60 (60)
66 KOG4692 Predicted E3 ubiquitin 94.4 0.019 4.2E-07 66.6 2.0 48 15-64 420-467 (489)
67 KOG1812 Predicted E3 ubiquitin 94.2 0.021 4.5E-07 67.5 1.6 88 17-106 146-251 (384)
68 PF14570 zf-RING_4: RING/Ubox 94.1 0.035 7.5E-07 48.7 2.3 44 20-63 1-47 (48)
69 KOG4739 Uncharacterized protei 93.9 0.026 5.7E-07 62.9 1.5 49 18-69 4-53 (233)
70 COG5220 TFB3 Cdk activating ki 93.8 0.021 4.6E-07 63.6 0.6 68 16-83 9-83 (314)
71 KOG1645 RING-finger-containing 93.6 0.035 7.6E-07 65.6 2.1 51 16-66 3-58 (463)
72 KOG1001 Helicase-like transcri 93.4 0.021 4.6E-07 71.7 -0.1 51 14-67 451-503 (674)
73 KOG2932 E3 ubiquitin ligase in 93.3 0.066 1.4E-06 61.6 3.4 47 13-63 85-133 (389)
74 PF05290 Baculo_IE-1: Baculovi 93.2 0.066 1.4E-06 55.5 3.1 49 16-66 79-134 (140)
75 KOG4367 Predicted Zn-finger pr 92.9 0.05 1.1E-06 64.5 1.8 37 14-52 1-37 (699)
76 KOG4275 Predicted E3 ubiquitin 92.8 0.018 3.9E-07 65.7 -1.8 44 15-64 298-342 (350)
77 KOG3161 Predicted E3 ubiquitin 92.8 0.042 9.1E-07 67.7 1.1 41 15-57 9-51 (861)
78 KOG0827 Predicted E3 ubiquitin 92.4 0.069 1.5E-06 63.0 2.1 42 18-60 5-52 (465)
79 COG5194 APC11 Component of SCF 92.3 0.1 2.3E-06 50.2 2.8 31 36-66 53-83 (88)
80 KOG0826 Predicted E3 ubiquitin 92.1 0.071 1.5E-06 61.8 1.8 49 14-64 297-346 (357)
81 KOG4362 Transcriptional regula 92.0 0.038 8.2E-07 69.0 -0.6 54 12-67 16-72 (684)
82 PF11793 FANCL_C: FANCL C-term 91.9 0.066 1.4E-06 49.6 0.9 49 17-65 2-67 (70)
83 KOG4185 Predicted E3 ubiquitin 91.8 0.17 3.8E-06 56.9 4.3 46 18-63 4-54 (296)
84 PF14447 Prok-RING_4: Prokaryo 91.4 0.1 2.2E-06 47.0 1.6 50 14-67 4-53 (55)
85 KOG0298 DEAD box-containing he 91.1 0.046 9.9E-07 71.6 -1.2 54 8-62 1144-1197(1394)
86 KOG1815 Predicted E3 ubiquitin 90.7 0.19 4.2E-06 60.3 3.6 53 15-69 68-131 (444)
87 smart00586 ZnF_DBF Zinc finger 90.7 0.062 1.3E-06 47.4 -0.5 30 1321-1353 5-34 (49)
88 KOG2462 C2H2-type Zn-finger pr 90.7 0.19 4E-06 57.4 3.1 119 14-144 127-271 (279)
89 KOG1571 Predicted E3 ubiquitin 90.5 0.13 2.9E-06 60.2 1.8 46 14-64 302-347 (355)
90 PHA03096 p28-like protein; Pro 90.3 0.19 4.2E-06 57.7 2.9 44 18-62 179-232 (284)
91 smart00744 RINGv The RING-vari 89.9 0.34 7.3E-06 42.3 3.4 42 19-60 1-49 (49)
92 PF12874 zf-met: Zinc-finger o 89.9 0.043 9.4E-07 40.5 -1.8 24 1323-1346 2-25 (25)
93 PF07535 zf-DBF: DBF zinc fing 89.8 0.13 2.8E-06 45.4 0.8 29 1321-1352 5-33 (49)
94 KOG0314 Predicted E3 ubiquitin 86.8 0.35 7.5E-06 58.5 2.0 46 12-60 214-262 (448)
95 KOG4445 Uncharacterized conser 86.2 0.26 5.6E-06 56.9 0.5 51 16-66 114-188 (368)
96 KOG1941 Acetylcholine receptor 85.7 0.3 6.5E-06 57.9 0.7 46 17-62 365-414 (518)
97 KOG3039 Uncharacterized conser 85.4 0.56 1.2E-05 53.1 2.6 39 11-51 37-75 (303)
98 KOG2231 Predicted E3 ubiquitin 83.7 0.7 1.5E-05 58.3 2.7 41 20-62 3-50 (669)
99 KOG3579 Predicted E3 ubiquitin 82.8 1 2.2E-05 51.9 3.2 47 15-63 266-322 (352)
100 PF05883 Baculo_RING: Baculovi 82.4 0.72 1.6E-05 48.2 1.7 44 17-62 26-78 (134)
101 KOG1428 Inhibitor of type V ad 81.8 0.99 2.2E-05 60.0 2.9 61 13-73 3482-3553(3738)
102 KOG1493 Anaphase-promoting com 81.4 0.59 1.3E-05 45.0 0.6 29 36-64 50-81 (84)
103 KOG3623 Homeobox transcription 81.1 0.97 2.1E-05 57.1 2.5 40 116-155 279-320 (1007)
104 KOG0297 TNF receptor-associate 80.4 1.3 2.8E-05 52.9 3.2 61 85-151 113-174 (391)
105 KOG2930 SCF ubiquitin ligase, 79.9 1.4 3E-05 44.6 2.6 28 36-63 80-107 (114)
106 KOG2817 Predicted E3 ubiquitin 79.4 1.5 3.2E-05 52.5 3.2 51 14-64 331-385 (394)
107 smart00451 ZnF_U1 U1-like zinc 78.4 0.65 1.4E-05 36.6 -0.1 29 1322-1350 4-32 (35)
108 KOG0006 E3 ubiquitin-protein l 78.2 3.1 6.7E-05 48.7 5.1 115 12-141 216-360 (446)
109 KOG0309 Conserved WD40 repeat- 78.1 1.2 2.6E-05 56.4 2.1 47 16-63 1027-1075(1081)
110 KOG3993 Transcription factor ( 76.7 0.58 1.2E-05 56.1 -1.1 43 11-64 261-306 (500)
111 KOG3970 Predicted E3 ubiquitin 76.6 2.8 6.1E-05 47.2 4.1 52 13-64 46-105 (299)
112 KOG1701 Focal adhesion adaptor 75.2 1.7 3.7E-05 52.4 2.1 44 16-63 301-344 (468)
113 PF03854 zf-P11: P-11 zinc fin 72.7 2 4.4E-05 38.2 1.4 44 19-65 4-47 (50)
114 PF08746 zf-RING-like: RING-li 72.3 3.6 7.8E-05 35.3 2.8 38 20-59 1-43 (43)
115 PF02891 zf-MIZ: MIZ/SP-RING z 72.1 1.9 4.2E-05 37.9 1.2 42 17-61 2-49 (50)
116 KOG1940 Zn-finger protein [Gen 71.9 4.2 9E-05 47.1 4.1 62 17-84 158-221 (276)
117 KOG2114 Vacuolar assembly/sort 71.3 2.1 4.5E-05 55.2 1.7 40 18-62 841-881 (933)
118 PRK04023 DNA polymerase II lar 70.8 2.7 5.9E-05 55.2 2.6 66 16-87 625-696 (1121)
119 KOG1952 Transcription factor N 70.5 2.5 5.4E-05 54.5 2.1 48 15-62 189-245 (950)
120 smart00734 ZnF_Rad18 Rad18-lik 70.1 3 6.5E-05 32.5 1.7 22 119-140 2-23 (26)
121 KOG1701 Focal adhesion adaptor 69.1 2.1 4.6E-05 51.6 1.1 47 17-66 360-407 (468)
122 PF13913 zf-C2HC_2: zinc-finge 68.7 3.5 7.7E-05 31.7 1.8 23 118-140 2-24 (25)
123 KOG2462 C2H2-type Zn-finger pr 68.1 5 0.00011 46.4 3.6 53 104-157 202-256 (279)
124 PF12171 zf-C2H2_jaz: Zinc-fin 67.8 1.2 2.7E-05 33.9 -0.7 25 1323-1347 3-27 (27)
125 PF05502 Dynactin_p62: Dynacti 67.6 2.6 5.7E-05 51.8 1.5 51 14-65 2-64 (483)
126 KOG2169 Zn-finger transcriptio 67.6 6.6 0.00014 49.9 4.9 54 13-68 302-360 (636)
127 COG3813 Uncharacterized protei 65.3 6.7 0.00015 37.7 3.3 49 20-70 8-58 (84)
128 PF10367 Vps39_2: Vacuolar sor 64.5 2.8 6.1E-05 40.0 0.7 33 14-47 75-108 (109)
129 KOG0825 PHD Zn-finger protein 64.2 4.6 9.9E-05 51.8 2.6 45 16-62 95-152 (1134)
130 KOG2893 Zn finger protein [Gen 63.8 2.3E+02 0.005 33.0 15.2 47 923-976 191-237 (341)
131 KOG3576 Ovo and related transc 62.8 1 2.3E-05 50.0 -2.8 14 14-27 114-127 (267)
132 PLN02189 cellulose synthase 61.5 4.9 0.00011 53.3 2.3 46 19-64 36-87 (1040)
133 KOG3268 Predicted E3 ubiquitin 61.4 6 0.00013 43.4 2.5 30 36-65 189-229 (234)
134 KOG3113 Uncharacterized conser 61.3 7.3 0.00016 44.7 3.3 51 15-69 109-163 (293)
135 PLN02195 cellulose synthase A 61.2 6.4 0.00014 52.0 3.2 46 19-64 8-59 (977)
136 PF06906 DUF1272: Protein of u 59.3 14 0.00031 34.0 4.1 44 19-64 7-52 (57)
137 PLN02638 cellulose synthase A 58.6 5.9 0.00013 52.7 2.3 46 19-64 19-70 (1079)
138 KOG2199 Signal transducing ada 58.4 22 0.00048 43.2 6.7 10 18-27 28-37 (462)
139 PF10272 Tmpp129: Putative tra 58.4 6.4 0.00014 47.1 2.4 32 36-67 310-354 (358)
140 PLN02436 cellulose synthase A 58.2 5.5 0.00012 52.9 2.0 46 19-64 38-89 (1094)
141 KOG4718 Non-SMC (structural ma 52.8 6.7 0.00014 44.1 1.2 43 18-62 182-225 (235)
142 KOG4443 Putative transcription 51.7 5.2 0.00011 50.6 0.3 50 12-61 13-70 (694)
143 PF14569 zf-UDP: Zinc-binding 51.7 15 0.00032 35.8 3.2 49 18-66 10-64 (80)
144 COG5109 Uncharacterized conser 51.5 11 0.00023 44.6 2.6 49 14-62 333-385 (396)
145 PRK14714 DNA polymerase II lar 51.0 7.4 0.00016 52.5 1.4 46 17-65 667-721 (1337)
146 TIGR00373 conserved hypothetic 50.8 14 0.00031 39.3 3.2 37 15-68 107-143 (158)
147 TIGR01562 FdhE formate dehydro 50.7 4.5 9.7E-05 47.4 -0.5 43 17-61 184-232 (305)
148 COG5183 SSM4 Protein involved 50.7 10 0.00022 49.0 2.5 54 15-68 10-70 (1175)
149 PLN02400 cellulose synthase 50.3 7.4 0.00016 51.9 1.3 46 19-64 38-89 (1085)
150 PHA02862 5L protein; Provision 50.2 12 0.00025 40.2 2.4 48 18-67 3-56 (156)
151 PHA02825 LAP/PHD finger-like p 49.8 16 0.00035 39.6 3.4 49 14-65 5-60 (162)
152 KOG1100 Predicted E3 ubiquitin 48.1 7 0.00015 43.4 0.5 38 20-63 161-199 (207)
153 PLN02915 cellulose synthase A 47.8 11 0.00024 50.2 2.3 49 16-64 14-68 (1044)
154 PRK06266 transcription initiat 47.5 19 0.0004 39.3 3.5 36 16-68 116-151 (178)
155 PF07191 zinc-ribbons_6: zinc- 47.2 2.2 4.8E-05 40.4 -2.9 41 17-64 1-41 (70)
156 PF08209 Sgf11: Sgf11 (transcr 46.3 7.5 0.00016 32.2 0.3 26 118-143 4-29 (33)
157 KOG2807 RNA polymerase II tran 45.4 17 0.00037 43.1 3.1 24 36-59 350-373 (378)
158 PF04216 FdhE: Protein involve 45.3 3.2 6.8E-05 47.5 -2.7 45 16-62 171-220 (290)
159 KOG1703 Adaptor protein Enigma 45.3 24 0.00051 43.5 4.4 46 15-64 328-374 (479)
160 KOG3899 Uncharacterized conser 45.2 11 0.00025 43.9 1.6 32 36-67 324-368 (381)
161 KOG2231 Predicted E3 ubiquitin 44.9 11 0.00024 48.2 1.6 24 36-59 96-121 (669)
162 PF06937 EURL: EURL protein; 43.7 22 0.00047 41.4 3.4 22 5-27 4-25 (285)
163 PRK03564 formate dehydrogenase 43.3 8.9 0.00019 45.1 0.4 44 16-61 186-234 (309)
164 COG0068 HypF Hydrogenase matur 42.2 17 0.00037 46.8 2.6 52 14-65 98-185 (750)
165 PRK14559 putative protein seri 41.7 8.8 0.00019 49.0 0.1 37 18-64 2-38 (645)
166 KOG3623 Homeobox transcription 41.5 14 0.00031 47.5 1.7 48 86-138 281-330 (1007)
167 KOG2789 Putative Zn-finger pro 41.1 10 0.00022 45.9 0.4 32 16-49 73-106 (482)
168 KOG4761 Proteasome formation i 41.0 1E+02 0.0023 35.7 8.1 46 1108-1161 203-248 (266)
169 KOG1812 Predicted E3 ubiquitin 40.4 13 0.00028 44.7 1.2 43 17-59 306-351 (384)
170 KOG0957 PHD finger protein [Ge 40.0 15 0.00032 45.6 1.5 26 117-152 251-276 (707)
171 KOG2068 MOT2 transcription fac 39.6 20 0.00043 42.6 2.4 47 18-64 250-298 (327)
172 PF05605 zf-Di19: Drought indu 38.8 31 0.00067 30.4 3.0 33 119-151 3-38 (54)
173 PF05605 zf-Di19: Drought indu 38.4 12 0.00026 33.0 0.3 20 118-138 31-50 (54)
174 PLN02248 cellulose synthase-li 38.2 21 0.00045 48.0 2.6 11 1011-1021 682-692 (1135)
175 COG3058 FdhE Uncharacterized p 37.6 28 0.0006 40.8 3.1 45 15-61 183-233 (308)
176 COG5151 SSL1 RNA polymerase II 37.2 42 0.0009 39.9 4.4 93 38-143 307-416 (421)
177 PF14446 Prok-RING_1: Prokaryo 36.6 31 0.00067 31.6 2.6 42 17-62 5-50 (54)
178 KOG2113 Predicted RNA binding 36.4 26 0.00056 41.5 2.7 48 12-63 338-386 (394)
179 PF03145 Sina: Seven in absent 34.8 10 0.00022 41.0 -0.8 38 123-160 23-64 (198)
180 KOG0289 mRNA splicing factor [ 33.7 30 0.00066 42.5 2.8 6 1138-1143 353-358 (506)
181 COG1198 PriA Primosomal protei 33.3 41 0.0009 43.8 4.0 12 55-66 446-457 (730)
182 KOG3002 Zn finger protein [Gen 33.2 6.1 0.00013 46.1 -2.9 87 54-150 49-142 (299)
183 PF12906 RINGv: RING-variant d 33.0 31 0.00066 30.1 2.0 40 20-59 1-47 (47)
184 KOG3576 Ovo and related transc 32.7 11 0.00023 42.4 -1.0 38 103-141 159-197 (267)
185 KOG2807 RNA polymerase II tran 32.2 33 0.00072 40.9 2.7 25 40-64 277-301 (378)
186 PF08894 DUF1838: Protein of u 32.1 27 0.00059 40.0 1.9 52 1276-1328 116-170 (238)
187 COG0777 AccD Acetyl-CoA carbox 31.7 24 0.00052 41.2 1.5 26 118-143 28-53 (294)
188 PF09770 PAT1: Topoisomerase I 31.4 16 0.00034 47.5 0.0 8 98-105 29-36 (808)
189 PF07948 Nairovirus_M: Nairovi 31.3 6.1 0.00013 48.9 -3.4 39 101-143 506-544 (645)
190 PRK14873 primosome assembly pr 31.2 26 0.00056 45.1 1.8 16 112-127 416-431 (665)
191 KOG0827 Predicted E3 ubiquitin 31.0 5.3 0.00012 48.0 -3.9 46 19-66 198-247 (465)
192 PF10005 DUF2248: Uncharacteri 30.8 52 0.0011 39.6 4.0 83 19-120 1-87 (343)
193 smart00647 IBR In Between Ring 30.6 15 0.00033 32.0 -0.2 35 16-50 17-59 (64)
194 PF03833 PolC_DP2: DNA polymer 30.4 17 0.00036 47.6 0.0 43 17-64 655-703 (900)
195 KOG1815 Predicted E3 ubiquitin 30.2 26 0.00056 42.7 1.5 31 30-61 177-207 (444)
196 KOG0129 Predicted RNA-binding 29.8 26 0.00056 43.7 1.4 36 15-50 453-493 (520)
197 KOG1829 Uncharacterized conser 29.6 17 0.00037 46.0 -0.1 43 16-61 510-558 (580)
198 PF07975 C1_4: TFIIH C1-like d 29.1 37 0.0008 30.7 1.9 39 20-60 2-50 (51)
199 PRK11088 rrmA 23S rRNA methylt 28.2 31 0.00067 38.8 1.6 24 18-41 3-27 (272)
200 COG0068 HypF Hydrogenase matur 28.0 23 0.0005 45.7 0.6 19 1051-1069 434-452 (750)
201 KOG3896 Dynactin, subunit p62 27.7 30 0.00065 41.3 1.4 91 12-107 19-122 (449)
202 PF13901 DUF4206: Domain of un 27.7 42 0.00091 37.1 2.4 41 16-61 151-197 (202)
203 PRK11595 DNA utilization prote 27.5 40 0.00086 37.5 2.2 38 19-63 7-44 (227)
204 KOG1044 Actin-binding LIM Zn-f 27.4 22 0.00047 45.0 0.2 111 14-135 88-209 (670)
205 TIGR00622 ssl1 transcription f 27.3 68 0.0015 33.2 3.6 25 36-60 86-110 (112)
206 KOG1818 Membrane trafficking a 26.9 17 0.00036 46.4 -0.9 45 15-61 163-219 (634)
207 KOG3362 Predicted BBOX Zn-fing 26.8 22 0.00049 38.1 0.2 28 18-49 119-148 (156)
208 KOG2979 Protein involved in DN 26.8 41 0.00089 39.0 2.2 40 17-58 176-218 (262)
209 KOG1356 Putative transcription 26.3 19 0.00041 47.0 -0.5 11 1255-1265 797-807 (889)
210 PF05502 Dynactin_p62: Dynacti 25.7 30 0.00065 43.0 1.0 11 119-129 53-63 (483)
211 KOG0956 PHD finger protein AF1 25.6 32 0.0007 44.2 1.2 25 35-59 44-68 (900)
212 KOG2893 Zn finger protein [Gen 25.5 30 0.00066 39.7 0.9 19 1313-1331 2-20 (341)
213 KOG4684 Uncharacterized conser 25.2 76 0.0017 36.2 3.8 56 85-143 137-195 (275)
214 COG1675 TFA1 Transcription ini 25.1 77 0.0017 35.0 3.8 39 15-70 111-149 (176)
215 PRK10263 DNA translocase FtsK; 24.3 1.7E+02 0.0037 40.9 7.3 14 1370-1383 1335-1348(1355)
216 PF13240 zinc_ribbon_2: zinc-r 23.3 15 0.00031 28.1 -1.4 20 42-61 2-21 (23)
217 KOG3815 Transcription factor D 23.2 51 0.0011 38.8 2.1 41 85-131 35-75 (322)
218 smart00064 FYVE Protein presen 23.0 58 0.0013 29.5 2.0 34 17-50 10-45 (68)
219 smart00818 Amelogenin Amelogen 22.8 3.9E+02 0.0084 29.6 8.2 25 488-512 82-106 (165)
220 PF06844 DUF1244: Protein of u 22.7 46 0.001 31.8 1.3 13 40-52 11-23 (68)
221 KOG4274 Positive cofactor 2 (P 22.5 1.9E+03 0.04 29.0 16.4 13 797-809 713-725 (742)
222 KOG3053 Uncharacterized conser 22.5 46 0.001 38.7 1.6 51 12-63 15-81 (293)
223 PF12756 zf-C2H2_2: C2H2 type 22.4 11 0.00023 35.0 -2.8 30 1321-1350 50-79 (100)
224 KOG0801 Predicted E3 ubiquitin 22.3 21 0.00046 38.9 -1.0 60 17-92 138-203 (205)
225 KOG3362 Predicted BBOX Zn-fing 22.2 38 0.00082 36.4 0.8 46 96-142 108-155 (156)
226 TIGR00515 accD acetyl-CoA carb 22.0 48 0.0011 38.7 1.7 26 118-143 26-51 (285)
227 CHL00174 accD acetyl-CoA carbo 22.0 46 0.001 39.2 1.5 26 118-143 38-63 (296)
228 PF01485 IBR: IBR domain; Int 21.9 17 0.00036 31.7 -1.6 34 16-49 17-58 (64)
229 TIGR00595 priA primosomal prot 21.7 55 0.0012 40.7 2.2 18 110-127 244-262 (505)
230 PRK05654 acetyl-CoA carboxylas 21.4 49 0.0011 38.8 1.5 25 118-142 27-51 (292)
231 PHA02335 hypothetical protein 21.3 28 0.00062 35.7 -0.3 20 1042-1061 19-38 (118)
232 cd00350 rubredoxin_like Rubred 20.9 63 0.0014 26.3 1.6 10 18-27 2-11 (33)
233 COG5627 MMS21 DNA repair prote 20.5 42 0.0009 38.6 0.7 59 17-81 189-252 (275)
234 KOG3799 Rab3 effector RIM1 and 20.2 25 0.00053 37.4 -1.0 48 14-62 62-116 (169)
235 smart00531 TFIIE Transcription 20.2 85 0.0018 33.0 2.8 14 54-67 124-137 (147)
236 KOG4218 Nuclear hormone recept 20.1 65 0.0014 38.8 2.1 12 16-27 14-25 (475)
No 1
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=99.57 E-value=1.8e-15 Score=174.38 Aligned_cols=153 Identities=25% Similarity=0.559 Sum_probs=133.4
Q ss_pred CCCcccccccccCCCCcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHH
Q 000610 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALA 79 (1392)
Q Consensus 1 MGFD~E~IvfVE~LeEeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLe 79 (1392)
|||+.+.+. ..++++|.|+||..++ .+|+++ .|||.||..|+.+|.+....||.|+..+..++.. ..+..++
T Consensus 7 ~~~~~~~~~--~~~~~~l~C~~C~~vl--~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~---~~~~~~~ 79 (391)
T KOG0297|consen 7 MGFDLKHLG--RPLDENLLCPICMSVL--RDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL---PVPRALR 79 (391)
T ss_pred ccccccccC--CCCcccccCccccccc--cCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc---CchHHHH
Confidence 899999987 5699999999999999 899995 9999999999999999988999999888776643 3577889
Q ss_pred HHhcceeeecccCCCCCceeecccCCCccCCCCCCCCcCccCCc-cchhhcHHHHHHHHh-cCCCCCCCCCCCCCccccc
Q 000610 80 ETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNR-CAIQIVHRQVQEHAQ-NCPGVQPQASQPEGVHDAA 157 (1392)
Q Consensus 80 KEI~qL~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp~-CgeqI~ReeLqeHLq-~CPk~pVkCPqcdgt~saa 157 (1392)
+++.++.+.|.+...||.|.+++..++.|+..| ..+.|+. |+..+.+.++.+|++ .|+.....|..|.-.....
T Consensus 80 ~~~~~l~i~c~~~~~GC~~~~~l~~~~~Hl~~c----~~~~C~~~C~~~~~~~d~~~hl~~~C~~~~~~c~~~~~~~~~~ 155 (391)
T KOG0297|consen 80 RELLKLPIRCIFASRGCRADLELEALQGHLSTC----DPLKCPHRCGVQVPRDDLEDHLEAECPRRSLKCSLCQSDSILI 155 (391)
T ss_pred HHHHhcccccccCCCCccccccHHHHHhHhccC----CcccCccccccccchHHHHHHHhcccccccccchhhcCccchh
Confidence 999999999999999999999999999999999 2689965 999999999999995 7999999999997554444
Q ss_pred ccccccC
Q 000610 158 AIGTAAT 164 (1392)
Q Consensus 158 s~s~~~a 164 (1392)
....+..
T Consensus 156 ~~~~h~~ 162 (391)
T KOG0297|consen 156 LLEAHEE 162 (391)
T ss_pred hhhhcCC
Confidence 4444433
No 2
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=99.26 E-value=4.8e-12 Score=139.40 Aligned_cols=175 Identities=16% Similarity=0.304 Sum_probs=112.7
Q ss_pred CcccccccccCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHH---
Q 000610 3 FDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALA--- 79 (1392)
Q Consensus 3 FD~E~IvfVE~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLe--- 79 (1392)
|..+.|..+..|+.-+.|-||.+.| ..|+.+.|||+||.-||.+.+.+...||+||....+..+...+-...+++
T Consensus 11 ~~~T~IPSL~~LDs~lrC~IC~~~i--~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~esrlr~~s~~~ei~es~~ 88 (391)
T COG5432 11 WNQTKIPSLKGLDSMLRCRICDCRI--SIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCESRLRGSSGSREINESHA 88 (391)
T ss_pred cccccCcchhcchhHHHhhhhhhee--ecceecccccchhHHHHHHHhcCCCCCccccccHHhhhcccchhHHHHHHhhh
Confidence 4456677788899999999999999 89999999999999999999999999999998765443322111111111
Q ss_pred ----HHhcceeeecc-----cCCCCCceeecccCCCccC----------CCCC--------------CCCcCccCCccch
Q 000610 80 ----ETIGKITVHCL-----FHRSGCTWQGPLSECTSHC----------SGCA--------------FGNSPVVCNRCAI 126 (1392)
Q Consensus 80 ----KEI~qL~VkCp-----Nkk~GCqwsgtLkELesH~----------esCe--------------y~~r~V~Cp~Cge 126 (1392)
-....|++.|+ +.+.-|.|...+..--.-. ++-+ ..+..+.|+.|..
T Consensus 89 ~~r~~l~~~L~~~~~~p~p~~ee~p~~~E~v~~~dS~S~~~~~eD~~~~~sS~~~iAKkt~~D~~KrK~E~l~~CP~C~~ 168 (391)
T COG5432 89 RNRDLLRKVLESLCRLPRPIKEERPCRWETVIAQDSASGDEEWEDDLASNSSPASIAKKTSRDSKKRKREDLVHCPACSN 168 (391)
T ss_pred hccHHHHHHHhcccCCCCchhhcCCCchhheeccccccccchhhhhhhhccChHHHHhhhhhHHHHhHHHhhhcCchhhc
Confidence 11222455563 2244576643322110000 0000 0035789999999
Q ss_pred hhcHHHHHHHHhcCCCCCCCCC-------CCCCcccccccccccCCCcchhhhhccccccc
Q 000610 127 QIVHRQVQEHAQNCPGVQPQAS-------QPEGVHDAAAIGTAATGDQSQVATQAGLTASQ 180 (1392)
Q Consensus 127 qI~ReeLqeHLq~CPk~pVkCP-------qcdgt~saas~s~~~a~dqSqsaTs~AaTaSA 180 (1392)
.+..+.|..|++.|-..+..-+ ..++.++ .+.+.+.+.+.+....+...++++
T Consensus 169 ~~P~~~i~~HLD~CL~~~S~~~~~Ss~~~~~~N~~~-~S~~~FK~~~~~i~K~~~~~~~~~ 228 (391)
T COG5432 169 LVPHNQINQHLDSCLNSPSSPSSSSSPYKNKDNSKS-NSLLSFKTDDDSITKRRLRSFNSA 228 (391)
T ss_pred cCchHHHHHHHHHHhcCCCCCcccCCCCCCCCCccc-ccccceecCCchhhhhhhccccch
Confidence 9999999999999976654422 1223444 345556667777666666666653
No 3
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.19 E-value=3.9e-11 Score=138.96 Aligned_cols=70 Identities=16% Similarity=0.390 Sum_probs=57.0
Q ss_pred ccccccCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHH
Q 000610 7 CILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKAL 78 (1392)
Q Consensus 7 ~IvfVE~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaL 78 (1392)
.+..++.|++.|+|+||++++ .+|+++.|+|+||..||..|+.....||+|+..+....+...+.++.+|
T Consensus 16 ~~~~l~~Le~~l~C~IC~d~~--~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~~Lr~N~~L~~iV 85 (397)
T TIGR00599 16 PIPSLYPLDTSLRCHICKDFF--DVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQESKLRSNWLVSEIV 85 (397)
T ss_pred CcccccccccccCCCcCchhh--hCccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccccCccchHHHHHH
Confidence 344567899999999999999 8999999999999999999998878999999988766554433333333
No 4
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=99.11 E-value=1.6e-11 Score=137.41 Aligned_cols=138 Identities=17% Similarity=0.325 Sum_probs=93.3
Q ss_pred CcccccccccCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHh
Q 000610 3 FDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETI 82 (1392)
Q Consensus 3 FD~E~IvfVE~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI 82 (1392)
|.-..|..+..|++.|.|.||.++| +.|+++.|+|+||.-||++++.....||.|+..+++.+++. |.+|.++|
T Consensus 9 w~~tsipslk~lD~lLRC~IC~eyf--~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~Lr~----n~il~Eiv 82 (442)
T KOG0287|consen 9 WPPTSIPSLKTLDDLLRCGICFEYF--NIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDLRN----NRILDEIV 82 (442)
T ss_pred CCCccCchhhhhHHHHHHhHHHHHh--cCceeccccchHHHHHHHHHhccCCCCCceecccchhhhhh----hhHHHHHH
Confidence 4445566778899999999999999 89999999999999999999999999999999998876543 44444333
Q ss_pred cceee--------------ecc-cCCCCCceeecccCCC----------------------------ccCCCCCCCCcCc
Q 000610 83 GKITV--------------HCL-FHRSGCTWQGPLSECT----------------------------SHCSGCAFGNSPV 119 (1392)
Q Consensus 83 ~qL~V--------------kCp-Nkk~GCqwsgtLkELe----------------------------sH~esCey~~r~V 119 (1392)
..+.+ .-+ +...---|+-.+.... .-.+.-++....+
T Consensus 83 ~S~~~~R~~Ll~fl~~~~~p~P~~~~~p~~~ve~~~~~~S~s~~~~~~dl~~~~~s~~~~ak~s~~dikk~Ksk~~eq~~ 162 (442)
T KOG0287|consen 83 KSLNFARNHLLQFLLESPAPSPASSSSPNLAVEVYTPVASRSSLKQGSDLMDNFLSREMSAKTSELDIKKNKSKFSEQKE 162 (442)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcccccCCccceeeecccccccchhcchhHHHhhccHHhhcchhHHHHHhhccCCchhhh
Confidence 33211 111 0000011111111100 0012223334578
Q ss_pred cCCccchhhcHHHHH-HHHhcCCCCCCC
Q 000610 120 VCNRCAIQIVHRQVQ-EHAQNCPGVQPQ 146 (1392)
Q Consensus 120 ~Cp~CgeqI~ReeLq-eHLq~CPk~pVk 146 (1392)
.|+.|...+.+..++ .|++.|-+.+..
T Consensus 163 ~cPac~~~~p~~~~e~~hldscl~~ps~ 190 (442)
T KOG0287|consen 163 ACPACKTKEPRSVEEIAHLDSCLKRPSP 190 (442)
T ss_pred hCcccccccchhhhhcccChHHhcCCCC
Confidence 999999999999988 899999776544
No 5
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.97 E-value=6.3e-10 Score=96.56 Aligned_cols=62 Identities=19% Similarity=0.331 Sum_probs=53.0
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcc
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGK 84 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~q 84 (1392)
+|.|+||++++ ++||.+.|||+||+.||.+|++....||.|+..++..++. .+..|++.|..
T Consensus 1 ~~~Cpi~~~~~--~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~~l~----~~~~l~~~i~~ 62 (63)
T smart00504 1 EFLCPISLEVM--KDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHEDLI----PNLALKSAIQE 62 (63)
T ss_pred CcCCcCCCCcC--CCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChhhce----eCHHHHHHHHh
Confidence 47899999999 8999999999999999999999888999999998776653 35667766653
No 6
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=98.86 E-value=3.9e-09 Score=118.93 Aligned_cols=113 Identities=24% Similarity=0.426 Sum_probs=97.0
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcceeeecccCC
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFHR 93 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNkk 93 (1392)
+.+.|.||||.+.++ ...++|.-||+.|..|-.+.. ..||.||..+.. + ...+++++++.+.|.|+|..
T Consensus 45 ~~~lleCPvC~~~l~-~Pi~QC~nGHlaCssC~~~~~---~~CP~Cr~~~g~--~-----R~~amEkV~e~~~vpC~~~~ 113 (299)
T KOG3002|consen 45 DLDLLDCPVCFNPLS-PPIFQCDNGHLACSSCRTKVS---NKCPTCRLPIGN--I-----RCRAMEKVAEAVLVPCKNAK 113 (299)
T ss_pred chhhccCchhhccCc-ccceecCCCcEehhhhhhhhc---ccCCcccccccc--H-----HHHHHHHHHHhceecccccc
Confidence 456678999999994 345669999999999997653 699999998873 1 47789999999999999999
Q ss_pred CCCceeecccCCCccCCCCCCCCcCccC--C--ccchhhcHHHHHHHHhc
Q 000610 94 SGCTWQGPLSECTSHCSGCAFGNSPVVC--N--RCAIQIVHRQVQEHAQN 139 (1392)
Q Consensus 94 ~GCqwsgtLkELesH~esCey~~r~V~C--p--~CgeqI~ReeLqeHLq~ 139 (1392)
.||.|.+.+.+..+|++.|.|. ...| + .|+..-..+++..|+..
T Consensus 114 ~GC~~~~~Y~~~~~HE~~C~f~--~~~CP~p~~~C~~~G~~~~l~~H~~~ 161 (299)
T KOG3002|consen 114 LGCTKSFPYGEKSKHEKVCEFR--PCSCPVPGAECKYTGSYKDLYAHLND 161 (299)
T ss_pred cCCceeeccccccccccccccC--CcCCCCCcccCCccCcHHHHHHHHHh
Confidence 9999999999999999999996 6666 4 89999999999999864
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=98.82 E-value=2.3e-09 Score=114.21 Aligned_cols=58 Identities=28% Similarity=0.616 Sum_probs=49.6
Q ss_pred CCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh----------------CCCCCCCCccccccCCcchh
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT----------------TQACPYDGYLVTEADSKPLV 72 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS----------------s~sCPvCRkpIt~sdl~piL 72 (1392)
++.+++.|+||++.+ ++|+.+.|||.||..||.+|+.. ...||+||..+...++.+++
T Consensus 14 ~~~~~~~CpICld~~--~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiy 87 (193)
T PLN03208 14 DSGGDFDCNICLDQV--RDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIY 87 (193)
T ss_pred cCCCccCCccCCCcC--CCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEee
Confidence 566789999999999 89999999999999999999752 24899999999877765543
No 8
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=1.8e-09 Score=113.32 Aligned_cols=56 Identities=25% Similarity=0.627 Sum_probs=47.7
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcc
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKP 70 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~p 70 (1392)
+..|.|+||++-+..+.++.+.|||+||+.||++.++....||+|++.|+...+++
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~~~r 184 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQFHR 184 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchhhhee
Confidence 34588999999886566677999999999999999999999999999887665443
No 9
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.80 E-value=3.1e-09 Score=96.91 Aligned_cols=66 Identities=20% Similarity=0.405 Sum_probs=51.8
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh-CCCCCCCCccccccCCcchhhhHHHHHHHhcce
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKPLVESNKALAETIGKI 85 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS-s~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL 85 (1392)
+.++|+|+||+++| .+||++.|||+||+.||++|+.. ...||.|+..+...++. .|..|++.|..+
T Consensus 1 iP~~f~CpIt~~lM--~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~l~----pn~~Lk~~I~~~ 67 (73)
T PF04564_consen 1 IPDEFLCPITGELM--RDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESDLI----PNRALKSAIEEW 67 (73)
T ss_dssp SSGGGB-TTTSSB---SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGGSE----E-HHHHHHHHHH
T ss_pred CCcccCCcCcCcHh--hCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCcccce----ECHHHHHHHHHH
Confidence 36789999999999 89999999999999999999998 78999999999887654 466777777654
No 10
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.66 E-value=9.5e-09 Score=111.58 Aligned_cols=56 Identities=30% Similarity=0.636 Sum_probs=49.3
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC---CCCCCCCccccccCCcchh
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT---QACPYDGYLVTEADSKPLV 72 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs---~sCPvCRkpIt~sdl~piL 72 (1392)
...|.|.||++.. +|||.|.|||+||-.||.+|+... ..||+|+..|+.+++.+|+
T Consensus 45 ~~~FdCNICLd~a--kdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlY 103 (230)
T KOG0823|consen 45 GGFFDCNICLDLA--KDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLY 103 (230)
T ss_pred CCceeeeeecccc--CCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeee
Confidence 4578999999999 899999999999999999999853 5899999999888776654
No 11
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.60 E-value=2.4e-08 Score=83.09 Aligned_cols=38 Identities=29% Similarity=0.836 Sum_probs=30.8
Q ss_pred ccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC----CCCCCC
Q 000610 20 CPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT----QACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDPVQTsCGHtFCksCIeewLkSs----~sCPvC 59 (1392)
|+||+++| ++||.+.|||+||..||.+|++.. ..||.|
T Consensus 1 CpiC~~~~--~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF--KDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB---SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh--CCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999 899999999999999999999853 379987
No 12
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.47 E-value=9.1e-08 Score=77.57 Aligned_cols=38 Identities=26% Similarity=0.823 Sum_probs=33.3
Q ss_pred ccCCcccccCCCC-EEcCCCCcccHhhHHHHHhhCCCCCCC
Q 000610 20 CPVCRLLVYPNEA-LQSQCTHLYCKPCLTYIVNTTQACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDP-VQTsCGHtFCksCIeewLkSs~sCPvC 59 (1392)
|+||++.+ .++ +.+.|||+||+.||++|++.+..||+|
T Consensus 1 C~iC~~~~--~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL--RDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB---SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcc--cCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999 789 568999999999999999998899988
No 13
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.43 E-value=8.2e-08 Score=99.16 Aligned_cols=48 Identities=29% Similarity=0.632 Sum_probs=43.2
Q ss_pred cCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCc
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRk 61 (1392)
..+.+++.|+||++.| ++|+++.|+|+||..||..++.....||.||.
T Consensus 8 ~~~~~~~~C~iC~~~~--~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 8 EVLQEELTCPICLEYF--REPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred hhccccccChhhHHHh--hcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 4678899999999999 88977899999999999999885569999995
No 14
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.41 E-value=1.7e-07 Score=79.47 Aligned_cols=47 Identities=21% Similarity=0.602 Sum_probs=40.8
Q ss_pred CcccccCCcccccCCCCEEcCCCCc-ccHhhHHHHHhhCCCCCCCCcccc
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCTHL-YCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCGHt-FCksCIeewLkSs~sCPvCRkpIt 64 (1392)
|+..|.||++.. .+.+...|||. ||..|+.+|++....||+||..|.
T Consensus 1 ~~~~C~iC~~~~--~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 1 EDEECPICFENP--RDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp -HSB-TTTSSSB--SSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred CcCCCccCCccC--CceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 467899999998 78888999999 999999999998899999999875
No 15
>PHA02929 N1R/p28-like protein; Provisional
Probab=98.40 E-value=2e-07 Score=102.64 Aligned_cols=50 Identities=22% Similarity=0.591 Sum_probs=41.2
Q ss_pred CCCcccccCCcccccCCC-------CEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYPNE-------ALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkD-------PVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
..++..|+||++.+. .+ ++.+.|+|.||..||.+|++...+||+||..+.
T Consensus 171 ~~~~~eC~ICle~~~-~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 171 RSKDKECAICMEKVY-DKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCCccCCcccc-cCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 345688999999773 22 245699999999999999998899999998765
No 16
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=98.35 E-value=1.9e-07 Score=77.16 Aligned_cols=42 Identities=19% Similarity=0.599 Sum_probs=34.9
Q ss_pred cccCCcccccC-CCCEEcCCCCcccHhhHHHHHhhCCCCCCCC
Q 000610 19 FCPVCRLLVYP-NEALQSQCTHLYCKPCLTYIVNTTQACPYDG 60 (1392)
Q Consensus 19 iCPICleVf~P-kDPVQTsCGHtFCksCIeewLkSs~sCPvCR 60 (1392)
.|+||++.+.. ...+.+.|+|+||..||.+|++.+.+||+||
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 59999998832 3445579999999999999999999999996
No 17
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=98.31 E-value=8.3e-08 Score=86.99 Aligned_cols=61 Identities=21% Similarity=0.524 Sum_probs=32.7
Q ss_pred CCCCcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHH
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAET 81 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKE 81 (1392)
.|++.|.|++|.++| ++||. ..|.|+||+.||...+. ..||+|+.+....| ++.|+.|..+
T Consensus 3 ~le~lLrCs~C~~~l--~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~qD----~~~NrqLd~~ 64 (65)
T PF14835_consen 3 RLEELLRCSICFDIL--KEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQD----IQINRQLDSM 64 (65)
T ss_dssp HHHHTTS-SSS-S----SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-SS--------HHHHHH
T ss_pred HHHHhcCCcHHHHHh--cCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHHH----HHhhhhhhcc
Confidence 456778999999999 89987 59999999999987655 35999998876555 3456666554
No 18
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.27 E-value=3.5e-07 Score=102.19 Aligned_cols=51 Identities=16% Similarity=0.418 Sum_probs=45.9
Q ss_pred CcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCC
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADS 68 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl 68 (1392)
....|.||++-. .+|--|.|||+||-.||.+|..++..||.||..+...++
T Consensus 238 a~~kC~LCLe~~--~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~pskv 288 (293)
T KOG0317|consen 238 ATRKCSLCLENR--SNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSKV 288 (293)
T ss_pred CCCceEEEecCC--CCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcce
Confidence 358899999988 799999999999999999999999999999998876553
No 19
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.24 E-value=3.3e-07 Score=108.26 Aligned_cols=58 Identities=24% Similarity=0.606 Sum_probs=49.3
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC-----CCCCCCCccccccCCcchhhhHH
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-----QACPYDGYLVTEADSKPLVESNK 76 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs-----~sCPvCRkpIt~sdl~piL~~Nk 76 (1392)
.+.||||++.. .-|+.+.|||+||..||..+|... ..||+|+..|...++.+++..+.
T Consensus 186 ~~~CPICL~~~--~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~~ 248 (513)
T KOG2164|consen 186 DMQCPICLEPP--SVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIEDD 248 (513)
T ss_pred CCcCCcccCCC--CcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeeccc
Confidence 78899999988 688999999999999999988754 48999999999888877654333
No 20
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=98.23 E-value=1.4e-07 Score=114.29 Aligned_cols=125 Identities=20% Similarity=0.346 Sum_probs=81.5
Q ss_pred CcccccCCcccccCCCCEE---cCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcceeeecccC
Q 000610 16 GEYFCPVCRLLVYPNEALQ---SQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFH 92 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ---TsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNk 92 (1392)
..-.|+||+.-+ .+-.+ ..|+|.||..||..|.+...+||+||..|....+.. .......|.|.-.
T Consensus 122 ~~~~CP~Ci~s~--~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~e---------S~~~~~~vR~lP~ 190 (1134)
T KOG0825|consen 122 VENQCPNCLKSC--NDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGEVKVLE---------STGIEANVRCLPS 190 (1134)
T ss_pred hhhhhhHHHHHH--HHHhhccccccccccHHHHhhhhhhhcccCchhhhhhheeeeec---------cccccceeEecch
Confidence 345699999777 44443 399999999999999999999999998776543211 1111112222211
Q ss_pred -------CCCCcee-ecccCCC---ccCCCCCCC---CcCccCCccchh-hcHHHHHHHHhcCCCCCCCCCCCC
Q 000610 93 -------RSGCTWQ-GPLSECT---SHCSGCAFG---NSPVVCNRCAIQ-IVHRQVQEHAQNCPGVQPQASQPE 151 (1392)
Q Consensus 93 -------k~GCqws-gtLkELe---sH~esCey~---~r~V~Cp~Cgeq-I~ReeLqeHLq~CPk~pVkCPqcd 151 (1392)
+.+-+.. ..+.... .-|..|... ++++.|..|+.. |...||+--+.+.+...|.|.+|-
T Consensus 191 EEs~~~~e~~~d~~~d~~~~~~~E~~~C~IC~~~DpEdVLLLCDsCN~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 191 EESENILEKGGDEKQDQISGLSQEEVKCDICTVHDPEDVLLLCDSCNKVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred hhhhhhhhhccccccccccCcccccccceeeccCChHHhheeecccccceeeccccCcccccccccceecCcch
Confidence 1111111 1122222 235556543 578899999998 777888888888899999999997
No 21
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.23 E-value=9.8e-07 Score=100.08 Aligned_cols=68 Identities=18% Similarity=0.476 Sum_probs=49.8
Q ss_pred CcccccCCcccccCCCCE--E-cCCCCcccHhhHHHHHhh-CCCCCCCCccccccCCcchhhhHHHHHHHhc
Q 000610 16 GEYFCPVCRLLVYPNEAL--Q-SQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKPLVESNKALAETIG 83 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPV--Q-TsCGHtFCksCIeewLkS-s~sCPvCRkpIt~sdl~piL~~NkaLeKEI~ 83 (1392)
++..||||+...+...-+ . ..|||.||..||..++.. ...||.|+..+...++.+.+..|..+++++.
T Consensus 2 d~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~fr~q~F~D~~vekEV~ 73 (309)
T TIGR00570 2 DDQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNNFRVQLFEDPTVEKEVD 73 (309)
T ss_pred CCCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhhccccccccHHHHHHHH
Confidence 457899999743212222 2 379999999999998765 4589999999988877666666777766554
No 22
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.19 E-value=1.3e-06 Score=69.20 Aligned_cols=42 Identities=24% Similarity=0.705 Sum_probs=36.6
Q ss_pred cccCCcccccCCCCEEc-CCCCcccHhhHHHHHhh-CCCCCCCCcc
Q 000610 19 FCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT-TQACPYDGYL 62 (1392)
Q Consensus 19 iCPICleVf~PkDPVQT-sCGHtFCksCIeewLkS-s~sCPvCRkp 62 (1392)
.|+||++.+ .+++.+ .|+|.||..||.+|++. ...||.|+..
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCc
Confidence 499999988 677776 59999999999999997 6789999875
No 23
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.18 E-value=1.2e-06 Score=71.02 Aligned_cols=38 Identities=26% Similarity=0.787 Sum_probs=34.2
Q ss_pred ccCCcccccCCCCE-EcCCCCcccHhhHHHHHh--hCCCCCCC
Q 000610 20 CPVCRLLVYPNEAL-QSQCTHLYCKPCLTYIVN--TTQACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDPV-QTsCGHtFCksCIeewLk--Ss~sCPvC 59 (1392)
|+||++++ .+++ .+.|+|.||..||.+|++ ....||.|
T Consensus 1 C~iC~~~~--~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPF--EDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBC--SSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccc--cCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 89999999 7888 689999999999999999 34689987
No 24
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.11 E-value=2.1e-07 Score=106.05 Aligned_cols=56 Identities=18% Similarity=0.590 Sum_probs=46.9
Q ss_pred ccccccCCCCcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 7 CILNIQSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 7 ~IvfVE~LeEeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+.+.+..+...++|+||+.++ +..+.+ .|.|.||..||.+.++. +..||.||+.+.
T Consensus 33 i~~~l~~~~~~v~c~icl~ll--k~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~ 90 (381)
T KOG0311|consen 33 IMVDLAMFDIQVICPICLSLL--KKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLV 90 (381)
T ss_pred heecHHHhhhhhccHHHHHHH--HhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcc
Confidence 334455678899999999999 788887 99999999999998885 579999998654
No 25
>PHA02926 zinc finger-like protein; Provisional
Probab=98.05 E-value=2.2e-06 Score=93.37 Aligned_cols=53 Identities=25% Similarity=0.611 Sum_probs=40.7
Q ss_pred CCCCcccccCCcccccCCC-------CEEcCCCCcccHhhHHHHHhhC------CCCCCCCccccc
Q 000610 13 SLAGEYFCPVCRLLVYPNE-------ALQSQCTHLYCKPCLTYIVNTT------QACPYDGYLVTE 65 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkD-------PVQTsCGHtFCksCIeewLkSs------~sCPvCRkpIt~ 65 (1392)
...++..|+||+++++.+. .+...|+|.||..||.+|.+.. ..||.||..+..
T Consensus 166 ~~SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~ 231 (242)
T PHA02926 166 RVSKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRN 231 (242)
T ss_pred hccCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeee
Confidence 4566899999998863211 2445999999999999999853 469999987653
No 26
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=98.00 E-value=1.7e-06 Score=98.20 Aligned_cols=57 Identities=19% Similarity=0.552 Sum_probs=49.0
Q ss_pred ccccccCCCCcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhCCCCCCCCccccc
Q 000610 7 CILNIQSLAGEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTTQACPYDGYLVTE 65 (1392)
Q Consensus 7 ~IvfVE~LeEeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs~sCPvCRkpIt~ 65 (1392)
..+.+.++....+|.+|..+| .|+.. +.|-|+||++||.+.+.....||+|...|-.
T Consensus 5 ~~vk~~~~n~~itC~LC~GYl--iDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 5 RRVKLTELNPHITCRLCGGYL--IDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred hhhhhhhcccceehhhcccee--ecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 344467889999999999999 78877 5999999999999999999999999876543
No 27
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=97.96 E-value=7.1e-06 Score=62.84 Aligned_cols=38 Identities=24% Similarity=0.815 Sum_probs=34.2
Q ss_pred ccCCcccccCCCCEEcCCCCcccHhhHHHHHh-hCCCCCCC
Q 000610 20 CPVCRLLVYPNEALQSQCTHLYCKPCLTYIVN-TTQACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDPVQTsCGHtFCksCIeewLk-Ss~sCPvC 59 (1392)
|+||++.. .+++.+.|+|.||..|+.+|++ ....||+|
T Consensus 1 C~iC~~~~--~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEEL--KDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCC--CCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 89999998 7889999999999999999998 45689987
No 28
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.91 E-value=2.1e-06 Score=105.33 Aligned_cols=56 Identities=21% Similarity=0.498 Sum_probs=48.6
Q ss_pred CCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh-CCCCCCCCccccccCCcc
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKP 70 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS-s~sCPvCRkpIt~sdl~p 70 (1392)
....-|.|++|..-+ +|.|++.|+|+||..|+.+.+.+ ..+||.|.+.|...|+.+
T Consensus 639 ~yK~~LkCs~Cn~R~--Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~ 695 (698)
T KOG0978|consen 639 EYKELLKCSVCNTRW--KDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGANDVHR 695 (698)
T ss_pred HHHhceeCCCccCch--hhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcccccc
Confidence 345678899999888 89999999999999999998875 579999999998877644
No 29
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.91 E-value=6.2e-06 Score=92.39 Aligned_cols=64 Identities=19% Similarity=0.512 Sum_probs=48.6
Q ss_pred ccccCCcccccCCCCEEc-CCCCcccHhhHHHHHh-hCCCCCCCCc-cccccCCcchhhhHHHHHHHhc
Q 000610 18 YFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVN-TTQACPYDGY-LVTEADSKPLVESNKALAETIG 83 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQT-sCGHtFCksCIeewLk-Ss~sCPvCRk-pIt~sdl~piL~~NkaLeKEI~ 83 (1392)
|.|++|..++ ..|+.+ +|+|.||..||...+. +...||+|.. .+..+.+.+.+...+.+++.+.
T Consensus 275 LkCplc~~Ll--rnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~rkdvlld~l~pD~dk~~EvE~~lk 341 (427)
T COG5222 275 LKCPLCHCLL--RNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSRKDVLLDGLTPDIDKKLEVEKALK 341 (427)
T ss_pred ccCcchhhhh--hCcccCccccchHHHHHHhhhhhhccccCCCcccccchhhccCccHHHHHHHHHHHH
Confidence 8999999999 899998 9999999999998766 5679999954 5555555555444444444443
No 30
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=97.84 E-value=1.2e-05 Score=67.11 Aligned_cols=43 Identities=21% Similarity=0.586 Sum_probs=35.4
Q ss_pred cccCCcccccC-CCCEEcCCCCcccHhhHHHHHhhCCCCCCCCc
Q 000610 19 FCPVCRLLVYP-NEALQSQCTHLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 19 iCPICleVf~P-kDPVQTsCGHtFCksCIeewLkSs~sCPvCRk 61 (1392)
.|.||.+.+.. ..++.+.|||+||..||.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 49999988721 35677899999999999999855679999984
No 31
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=97.80 E-value=1.2e-05 Score=67.94 Aligned_cols=35 Identities=31% Similarity=0.997 Sum_probs=22.4
Q ss_pred ccCCcccccCCC----CEEcCCCCcccHhhHHHHHhhC----CCCC
Q 000610 20 CPVCRLLVYPNE----ALQSQCTHLYCKPCLTYIVNTT----QACP 57 (1392)
Q Consensus 20 CPICleVf~PkD----PVQTsCGHtFCksCIeewLkSs----~sCP 57 (1392)
|+||++ + .+ |+.+.|||+||+.||.++++++ .+||
T Consensus 1 CpIc~e-~--~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-F--STEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-------TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-c--cCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 999999 7 56 8999999999999999999853 3676
No 32
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=1.3e-05 Score=88.98 Aligned_cols=50 Identities=24% Similarity=0.462 Sum_probs=42.8
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHH-HHhhCC-CCCCCCcccccc
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTY-IVNTTQ-ACPYDGYLVTEA 66 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIee-wLkSs~-sCPvCRkpIt~s 66 (1392)
..++.|.||++.. ..+..+.|||+||-.||.. |.+... .||.||..+...
T Consensus 213 ~~d~kC~lC~e~~--~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk 264 (271)
T COG5574 213 LADYKCFLCLEEP--EVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK 264 (271)
T ss_pred ccccceeeeeccc--CCcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence 5679999999999 7999999999999999999 766554 699999876543
No 33
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=97.56 E-value=6.5e-05 Score=69.27 Aligned_cols=41 Identities=20% Similarity=0.587 Sum_probs=32.3
Q ss_pred ccCCcccccC----------CCC-EEcCCCCcccHhhHHHHHhhCCCCCCCC
Q 000610 20 CPVCRLLVYP----------NEA-LQSQCTHLYCKPCLTYIVNTTQACPYDG 60 (1392)
Q Consensus 20 CPICleVf~P----------kDP-VQTsCGHtFCksCIeewLkSs~sCPvCR 60 (1392)
|.||++.|.. .-+ +...|+|.|...||.+|++...+||+||
T Consensus 22 C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 22 CAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp ETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred ccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 9999988811 112 2248999999999999999999999997
No 34
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=97.41 E-value=7.5e-05 Score=80.39 Aligned_cols=61 Identities=16% Similarity=0.398 Sum_probs=48.6
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcc
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGK 84 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~q 84 (1392)
-|.|.||.+-+ ..||.+.|||.||..|..+-......|-+|.+...- .+.....|.+++++
T Consensus 196 PF~C~iCKkdy--~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~G-----~f~V~~d~~kmL~~ 256 (259)
T COG5152 196 PFLCGICKKDY--ESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATYG-----RFWVVSDLQKMLNK 256 (259)
T ss_pred ceeehhchhhc--cchhhhhcchhHHHHHHHHHhccCCcceecchhhcc-----ceeHHhhHHHHHhh
Confidence 47899999999 899999999999999999988889999999875321 23344555665554
No 35
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.36 E-value=7.3e-05 Score=90.62 Aligned_cols=47 Identities=19% Similarity=0.505 Sum_probs=41.6
Q ss_pred CcccccCCcccccCCC-----CEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 16 GEYFCPVCRLLVYPNE-----ALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 16 EeLiCPICleVf~PkD-----PVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
....|.||.+.+ .. +....|+|+||..|+.+|++...+||.||..+.
T Consensus 290 ~~~~C~IC~e~l--~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~ 341 (543)
T KOG0802|consen 290 SDELCIICLEEL--HSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLY 341 (543)
T ss_pred cCCeeeeechhh--ccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhh
Confidence 367899999998 55 778899999999999999999999999998443
No 36
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.00022 Score=83.95 Aligned_cols=51 Identities=24% Similarity=0.575 Sum_probs=45.5
Q ss_pred CCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccc
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTE 65 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~ 65 (1392)
.+..+|.|.||...+ .+|+.+.|||.||..||.+.+.....||.||..+..
T Consensus 80 ~~~sef~c~vc~~~l--~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 80 EIRSEFECCVCSRAL--YPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cccchhhhhhhHhhc--CCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 357899999999999 799999999999999999988888899999987653
No 37
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00037 Score=80.80 Aligned_cols=49 Identities=18% Similarity=0.381 Sum_probs=40.2
Q ss_pred ccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhCC-CCCCCCcccccc
Q 000610 18 YFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEA 66 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs~-sCPvCRkpIt~s 66 (1392)
..|.||++-+.+.|-+. +.|.|.|-..||..|+...+ .||+|+..+...
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~ 280 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTD 280 (348)
T ss_pred ceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCC
Confidence 49999999885555554 69999999999999999775 699999866543
No 38
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.04 E-value=0.00042 Score=80.13 Aligned_cols=53 Identities=19% Similarity=0.377 Sum_probs=43.1
Q ss_pred CCcccccCCcccccC-----------CCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccC
Q 000610 15 AGEYFCPVCRLLVYP-----------NEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEAD 67 (1392)
Q Consensus 15 eEeLiCPICleVf~P-----------kDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sd 67 (1392)
.++-.|.||.+-++. ..|..+.|||++-..|+..|++...+||+||.++..+.
T Consensus 285 n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~ 348 (491)
T COG5243 285 NSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQ 348 (491)
T ss_pred CCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcccccc
Confidence 467789999987421 12477899999999999999999999999999865444
No 39
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.89 E-value=0.00042 Score=78.43 Aligned_cols=44 Identities=18% Similarity=0.510 Sum_probs=40.4
Q ss_pred ccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccc
Q 000610 18 YFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpI 63 (1392)
|.|-||...+ .+||.+.|+|.||..|..+-+..+..|.+|...+
T Consensus 242 f~c~icr~~f--~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t 285 (313)
T KOG1813|consen 242 FKCFICRKYF--YRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQT 285 (313)
T ss_pred cccccccccc--ccchhhcCCceeehhhhccccccCCcceeccccc
Confidence 3499999999 8999999999999999999999899999998764
No 40
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.88 E-value=0.00053 Score=76.03 Aligned_cols=53 Identities=19% Similarity=0.385 Sum_probs=46.8
Q ss_pred CCcccccCCcccccCCCCEEc----CCCCcccHhhHHHHHhhCCCCCCCCccccccCCc
Q 000610 15 AGEYFCPVCRLLVYPNEALQS----QCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSK 69 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQT----sCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~ 69 (1392)
.+.|+|+||.+.| .+.+.| .|||+||..|.+++++....||+|.+++...++.
T Consensus 219 s~ryiCpvtrd~L--tNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrdiI 275 (303)
T KOG3039|consen 219 SKRYICPVTRDTL--TNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRDII 275 (303)
T ss_pred ccceecccchhhh--cCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccceE
Confidence 3679999999999 676664 9999999999999999999999999998877754
No 41
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.86 E-value=0.00055 Score=77.65 Aligned_cols=49 Identities=18% Similarity=0.398 Sum_probs=39.8
Q ss_pred CcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHh-hCCCCCCCCcccc
Q 000610 16 GEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVN-TTQACPYDGYLVT 64 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLk-Ss~sCPvCRkpIt 64 (1392)
.-..|.||++-+...|-+. +.|.|.|-..|+++|+. -+..||+||..+.
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCC
Confidence 3467999998764444444 69999999999999999 5679999998764
No 42
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.001 Score=74.89 Aligned_cols=48 Identities=27% Similarity=0.504 Sum_probs=40.3
Q ss_pred CCcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhC--CCCCCCCcccc
Q 000610 15 AGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTT--QACPYDGYLVT 64 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs--~sCPvCRkpIt 64 (1392)
..+.+|++|.+.. +.|.+. +|+|+||..||.+..... .+||.|.+.+.
T Consensus 237 t~~~~C~~Cg~~P--tiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 237 TSDTECPVCGEPP--TIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred cCCceeeccCCCC--CCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 4577899999988 788886 799999999999977643 79999998654
No 43
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.72 E-value=0.00069 Score=60.43 Aligned_cols=45 Identities=18% Similarity=0.451 Sum_probs=31.4
Q ss_pred cCCCCcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhh--CCCCCC
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT--TQACPY 58 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkS--s~sCPv 58 (1392)
+.-.-.+.|||.+.+| ++||.. .|+|+|.+..|..++.. ...||+
T Consensus 6 ~~~~~~~~CPiT~~~~--~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 6 EGGTISLKCPITLQPF--EDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp -SSB--SB-TTTSSB---SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccEeccCCCCcCChh--hCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 3445578999999999 899996 99999999999999943 358998
No 44
>PLN03086 PRLI-interacting factor K; Provisional
Probab=96.72 E-value=0.0011 Score=81.03 Aligned_cols=83 Identities=17% Similarity=0.315 Sum_probs=57.7
Q ss_pred CCCCCCCccccccCCcchhhhHHHHHHHhcceeeecccCCCCCceeecccCCCccC-CCCCCCCcCccCCccchhhc---
Q 000610 54 QACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHC-SGCAFGNSPVVCNRCAIQIV--- 129 (1392)
Q Consensus 54 ~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~-esCey~~r~V~Cp~CgeqI~--- 129 (1392)
..|+.|.+.+.... ..++.+. + ...+.|+ |.......+|..|. ..|... .+.|.+|+..+.
T Consensus 454 ~~C~~Cgk~f~~s~------LekH~~~-~-Hkpv~Cp-----Cg~~~~R~~L~~H~~thCp~K--pi~C~fC~~~v~~g~ 518 (567)
T PLN03086 454 VHCEKCGQAFQQGE------MEKHMKV-F-HEPLQCP-----CGVVLEKEQMVQHQASTCPLR--LITCRFCGDMVQAGG 518 (567)
T ss_pred ccCCCCCCccchHH------HHHHHHh-c-CCCccCC-----CCCCcchhHHHhhhhccCCCC--ceeCCCCCCccccCc
Confidence 47999987764322 1222221 2 3556775 66656667788887 468885 889999998774
Q ss_pred --------HHHHHHHHhcCCCCCCCCCCCC
Q 000610 130 --------HRQVQEHAQNCPGVQPQASQPE 151 (1392)
Q Consensus 130 --------ReeLqeHLq~CPk~pVkCPqcd 151 (1392)
...|..|...|....+.|..|.
T Consensus 519 ~~~d~~d~~s~Lt~HE~~CG~rt~~C~~Cg 548 (567)
T PLN03086 519 SAMDVRDRLRGMSEHESICGSRTAPCDSCG 548 (567)
T ss_pred cccchhhhhhhHHHHHHhcCCcceEccccC
Confidence 3478899989999999998886
No 45
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.70 E-value=0.00065 Score=81.09 Aligned_cols=52 Identities=23% Similarity=0.545 Sum_probs=44.0
Q ss_pred CCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh-----CCCCCCCCcccccc
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-----TQACPYDGYLVTEA 66 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS-----s~sCPvCRkpIt~s 66 (1392)
+-..+.+|.+|.+.. .|++.+.|.|.||+-||.+++.. +.+||+|...+..+
T Consensus 532 enk~~~~C~lc~d~a--ed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD 588 (791)
T KOG1002|consen 532 ENKGEVECGLCHDPA--EDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID 588 (791)
T ss_pred cccCceeecccCChh--hhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence 345578899999999 89999999999999999998874 35999998876544
No 46
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.62 E-value=0.0014 Score=63.00 Aligned_cols=52 Identities=23% Similarity=0.537 Sum_probs=36.8
Q ss_pred CCCcccccCCccccc--------C-CC-CEE-cCCCCcccHhhHHHHHhh---CCCCCCCCccccc
Q 000610 14 LAGEYFCPVCRLLVY--------P-NE-ALQ-SQCTHLYCKPCLTYIVNT---TQACPYDGYLVTE 65 (1392)
Q Consensus 14 LeEeLiCPICleVf~--------P-kD-PVQ-TsCGHtFCksCIeewLkS---s~sCPvCRkpIt~ 65 (1392)
+.++-.|.||...|. | ++ |+. ..|+|.|-..||.+|+++ +..||+||..+..
T Consensus 18 ~~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 18 VANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred cCCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 344556777666651 0 12 433 499999999999999995 3699999987643
No 47
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.47 E-value=0.0013 Score=74.74 Aligned_cols=48 Identities=17% Similarity=0.408 Sum_probs=41.0
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC-CCCCCCCcccccc
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEA 66 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs-~sCPvCRkpIt~s 66 (1392)
.-+|.||+... .-|+.+.|+|.||.-||+-..... ..|++||.+|...
T Consensus 7 ~~eC~IC~nt~--n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTG--NCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccC--CcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 35699999988 788999999999999999877654 5699999988653
No 48
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=96.40 E-value=0.00041 Score=73.87 Aligned_cols=67 Identities=28% Similarity=0.459 Sum_probs=39.2
Q ss_pred HHHHHHHhcceeeecccCCCCCceeecccCCCccCCCCCCCCcCccCCc----cchhhcHHHHHHHHhcCCCC
Q 000610 75 NKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNR----CAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 75 NkaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp~----CgeqI~ReeLqeHLq~CPk~ 143 (1392)
+..|++.+..+.+-|+|...||.+...+.++.+|++.|.|. ++.|+. |++.-...+|..|+......
T Consensus 3 ~~alE~v~~~~~~pC~~~~~GC~~~~~~~~~~~HE~~C~~~--p~~CP~~~~~C~~~G~~~~l~~Hl~~~H~~ 73 (198)
T PF03145_consen 3 NRALEKVAESIKFPCKNAKYGCTETFPYSEKREHEEECPFR--PCSCPFPGSGCDWQGSYKELLDHLRDKHSW 73 (198)
T ss_dssp ------------EE-CCGGGT---EE-GGGHHHHHHT-TTS--EEE-SSSSTT---EEECCCHHHHHHHHTTT
T ss_pred cHHHHHHHhhceecCCCCCCCCcccccccChhhHhccCCCc--CCcCCCCCCCccccCCHHHHHHHHHHHCCC
Confidence 56789999999999999999999999999999999999997 888865 99988888999998765443
No 49
>PLN03086 PRLI-interacting factor K; Provisional
Probab=96.38 E-value=0.0048 Score=75.73 Aligned_cols=91 Identities=16% Similarity=0.330 Sum_probs=66.7
Q ss_pred CCCCCCccccccCCcchhhhHHHHHHHhcceeeecccCCCCCceeecccCCCccC--CCCCCC-------------CcCc
Q 000610 55 ACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHC--SGCAFG-------------NSPV 119 (1392)
Q Consensus 55 sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~--esCey~-------------~r~V 119 (1392)
.|+.|...+....+ ..+ +..|....|.|++ .+|...+...++++|. ..|... ...+
T Consensus 409 ~C~NC~~~i~l~~l------~lH-e~~C~r~~V~Cp~--~~Cg~v~~r~el~~H~~C~~Cgk~f~~s~LekH~~~~Hkpv 479 (567)
T PLN03086 409 ECRNCKHYIPSRSI------ALH-EAYCSRHNVVCPH--DGCGIVLRVEEAKNHVHCEKCGQAFQQGEMEKHMKVFHEPL 479 (567)
T ss_pred ECCCCCCccchhHH------HHH-HhhCCCcceeCCc--ccccceeeccccccCccCCCCCCccchHHHHHHHHhcCCCc
Confidence 68888877654432 112 3557777888886 3788888777777753 666432 1356
Q ss_pred cCCccchhhcHHHHHHHHh-cCCCCCCCCCCCCCccc
Q 000610 120 VCNRCAIQIVHRQVQEHAQ-NCPGVQPQASQPEGVHD 155 (1392)
Q Consensus 120 ~Cp~CgeqI~ReeLqeHLq-~CPk~pVkCPqcdgt~s 155 (1392)
.|+ |+..+.+..|..|+. .|+..++.|++|.....
T Consensus 480 ~Cp-Cg~~~~R~~L~~H~~thCp~Kpi~C~fC~~~v~ 515 (567)
T PLN03086 480 QCP-CGVVLEKEQMVQHQASTCPLRLITCRFCGDMVQ 515 (567)
T ss_pred cCC-CCCCcchhHHHhhhhccCCCCceeCCCCCCccc
Confidence 899 999899999999987 69999999999986653
No 50
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.30 E-value=0.0015 Score=76.77 Aligned_cols=85 Identities=21% Similarity=0.398 Sum_probs=50.7
Q ss_pred CCCcccccCCcccccCCCC-EEcCCCCcccHhhHHHHHhh--------CCCCCCCC--ccccccCCcchhhhH-------
Q 000610 14 LAGEYFCPVCRLLVYPNEA-LQSQCTHLYCKPCLTYIVNT--------TQACPYDG--YLVTEADSKPLVESN------- 75 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDP-VQTsCGHtFCksCIeewLkS--------s~sCPvCR--kpIt~sdl~piL~~N------- 75 (1392)
+...+.|.||.+-..-..- +.+.|+|.||+.|+..+... ...||.|. .......++.++-.+
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~~~a~~g~vKelvg~EL~arYe~ 260 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCGSVAPPGQVKELVGDELFARYEK 260 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCcccCCchHHHHHHHHHHHHHHHH
Confidence 4456889999976521122 33799999999999998763 13898754 333333332222211
Q ss_pred HHHHHHhccee--eecccCCCCCceee
Q 000610 76 KALAETIGKIT--VHCLFHRSGCTWQG 100 (1392)
Q Consensus 76 kaLeKEI~qL~--VkCpNkk~GCqwsg 100 (1392)
..+++.+..+. ++||+. .|+...
T Consensus 261 l~lqk~l~~msdv~yCPr~--~Cq~p~ 285 (445)
T KOG1814|consen 261 LMLQKTLELMSDVVYCPRA--CCQLPV 285 (445)
T ss_pred HHHHHHHHhhcccccCChh--hccCcc
Confidence 11234444443 899985 566554
No 51
>PF04641 Rtf2: Rtf2 RING-finger
Probab=96.25 E-value=0.0033 Score=70.21 Aligned_cols=59 Identities=24% Similarity=0.455 Sum_probs=45.5
Q ss_pred CCCcccccCCcccccCCCCEE--cCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhh
Q 000610 14 LAGEYFCPVCRLLVYPNEALQ--SQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVE 73 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQ--TsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~ 73 (1392)
....|+|||+...|...-.+. -.|||+||..||.++- ....||+|...+...++..|..
T Consensus 110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp 170 (260)
T PF04641_consen 110 SEGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEEDIIPLNP 170 (260)
T ss_pred CCceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccCCEEEecC
Confidence 467899999999982111222 2999999999999994 4568999999999888765443
No 52
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.0035 Score=72.73 Aligned_cols=47 Identities=21% Similarity=0.474 Sum_probs=41.8
Q ss_pred CcccccCCcccccCCCCEEcCCCCc-ccHhhHHHHHhhCCCCCCCCcccc
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCTHL-YCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCGHt-FCksCIeewLkSs~sCPvCRkpIt 64 (1392)
.-..|-||+.-. +|.+++.|.|+ .|+.|.+.+.-..+.||+||..|.
T Consensus 289 ~gkeCVIClse~--rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~ 336 (349)
T KOG4265|consen 289 SGKECVICLSES--RDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIE 336 (349)
T ss_pred CCCeeEEEecCC--cceEEecchhhehhHhHHHHHHHhhcCCCccccchH
Confidence 356899999999 89999999997 899999998877889999998764
No 53
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=96.14 E-value=0.0024 Score=67.30 Aligned_cols=85 Identities=21% Similarity=0.413 Sum_probs=58.6
Q ss_pred CcccccCCcccccCCCCEEcCCC-------CcccH------hhHHHHHhh------------------------------
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCT-------HLYCK------PCLTYIVNT------------------------------ 52 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCG-------HtFCk------sCIeewLkS------------------------------ 52 (1392)
|+..|+||++.. .++|.+.|. -.+|. .||..+.+.
T Consensus 1 ed~~CpICme~P--HNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (162)
T PF07800_consen 1 EDVTCPICMEHP--HNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQ 78 (162)
T ss_pred CCccCceeccCC--CceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCccccccccccc
Confidence 467899999988 899997554 22443 688876642
Q ss_pred -CCCCCCCCccccccCCcchhhhHHHHHHHhcceeeecccCCCCCceeecccCCCccCC
Q 000610 53 -TQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCS 110 (1392)
Q Consensus 53 -s~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~e 110 (1392)
...||+||..|..-. .-.-.++.++...=.|.. ++|.+.|+|.+|.+|..
T Consensus 79 ~~L~CPLCRG~V~GWt------vve~AR~~LN~K~RsC~~--e~C~F~GtY~eLrKHar 129 (162)
T PF07800_consen 79 PELACPLCRGEVKGWT------VVEPARRFLNAKKRSCSQ--ESCSFSGTYSELRKHAR 129 (162)
T ss_pred ccccCccccCceeceE------EchHHHHHhccCCccCcc--cccccccCHHHHHHHHH
Confidence 126999998765321 122356667666666765 58999999888888863
No 54
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=96.02 E-value=0.0023 Score=74.66 Aligned_cols=46 Identities=24% Similarity=0.626 Sum_probs=39.2
Q ss_pred cccCCcccccCCCCEEcCCCCcccHhhHHHHHhh--CCCCCCCCcccccc
Q 000610 19 FCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT--TQACPYDGYLVTEA 66 (1392)
Q Consensus 19 iCPICleVf~PkDPVQTsCGHtFCksCIeewLkS--s~sCPvCRkpIt~s 66 (1392)
+|.||-+-= +|..+-.|||+.|..||..|..+ ...||.||+.|.-.
T Consensus 371 LCKICaend--KdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 371 LCKICAEND--KDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHhhccC--CCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 599999877 67777799999999999999864 46999999987643
No 55
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.92 E-value=0.0039 Score=72.64 Aligned_cols=48 Identities=23% Similarity=0.589 Sum_probs=37.8
Q ss_pred CCcccccCCcccccCCCCE-----E---cCCCCcccHhhHHHHHh--h-----CCCCCCCCcccc
Q 000610 15 AGEYFCPVCRLLVYPNEAL-----Q---SQCTHLYCKPCLTYIVN--T-----TQACPYDGYLVT 64 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPV-----Q---TsCGHtFCksCIeewLk--S-----s~sCPvCRkpIt 64 (1392)
..+..|.||++.+ .+.. . ..|.|.||..||.+|.. . .+.||.||....
T Consensus 159 s~~k~CGICme~i--~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~ 221 (344)
T KOG1039|consen 159 SSEKECGICMETI--NEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS 221 (344)
T ss_pred cccccceehhhhc--cccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence 4578899999988 3444 2 48999999999999984 3 369999997543
No 56
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=95.91 E-value=0.0011 Score=57.71 Aligned_cols=40 Identities=28% Similarity=0.674 Sum_probs=24.9
Q ss_pred cCCCCCCCCcCccCCc--cchhhcHHHHHHHHh-cCCCCCCCCCC
Q 000610 108 HCSGCAFGNSPVVCNR--CAIQIVHRQVQEHAQ-NCPGVQPQASQ 149 (1392)
Q Consensus 108 H~esCey~~r~V~Cp~--CgeqI~ReeLqeHLq-~CPk~pVkCPq 149 (1392)
|...|.+. .+.|++ |...|.+.+|.+|+. .|++..+.|++
T Consensus 1 H~~~C~~~--~v~C~~~cc~~~i~r~~l~~H~~~~C~~~~v~C~~ 43 (60)
T PF02176_consen 1 HEEECPFR--PVPCPNGCCNEMIPRKELDDHLENECPKRPVPCPY 43 (60)
T ss_dssp HHTTSTTS--EEE-TT--S-BEEECCCHHHHHHTTSTTSEEE-SS
T ss_pred CcccCCCC--EeeCCCCCcccceeHHHHHHHHHccCCCCcEECCC
Confidence 44556665 677765 556677777777776 67777777777
No 57
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=95.75 E-value=0.0057 Score=70.46 Aligned_cols=53 Identities=19% Similarity=0.459 Sum_probs=39.2
Q ss_pred CCcccccCCcccccCCC--CEEcCCCCcccHhhHHHHHhh-CCCCCCCCccccccCC
Q 000610 15 AGEYFCPVCRLLVYPNE--ALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADS 68 (1392)
Q Consensus 15 eEeLiCPICleVf~PkD--PVQTsCGHtFCksCIeewLkS-s~sCPvCRkpIt~sdl 68 (1392)
+|++ |++|.+.+...| -+-|.||...|..||..+... +.+||.||...+.+.+
T Consensus 13 eed~-cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDY-CPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred cccc-CcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 3444 999998772111 223899999999999988765 4699999987766554
No 58
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.50 E-value=0.0033 Score=56.37 Aligned_cols=45 Identities=18% Similarity=0.419 Sum_probs=38.8
Q ss_pred ccccCCcccccCCCCEEcCCCCc-ccHhhHHHHHh-hCCCCCCCCcccc
Q 000610 18 YFCPVCRLLVYPNEALQSQCTHL-YCKPCLTYIVN-TTQACPYDGYLVT 64 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQTsCGHt-FCksCIeewLk-Ss~sCPvCRkpIt 64 (1392)
-+|.||.+-. .|.|.-.|||+ .|..|-.+.++ ....||+||.+|.
T Consensus 8 dECTICye~p--vdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 8 DECTICYEHP--VDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred cceeeeccCc--chHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 5699999877 78888899997 89999999888 5679999998764
No 59
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.49 E-value=0.0038 Score=74.08 Aligned_cols=47 Identities=26% Similarity=0.513 Sum_probs=37.9
Q ss_pred CCCcccccCCcccccCCCCE----EcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYPNEAL----QSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPV----QTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
+.+.-+|+||++-| ++-+ .+-|.|.|=..|+.+|+. .+||+||....
T Consensus 172 ~tELPTCpVCLERM--D~s~~gi~t~~c~Hsfh~~cl~~w~~--~scpvcR~~q~ 222 (493)
T KOG0804|consen 172 LTELPTCPVCLERM--DSSTTGILTILCNHSFHCSCLMKWWD--SSCPVCRYCQS 222 (493)
T ss_pred cccCCCcchhHhhc--CccccceeeeecccccchHHHhhccc--CcChhhhhhcC
Confidence 44556899999999 4444 359999999999999975 68999997544
No 60
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.42 E-value=0.0075 Score=72.14 Aligned_cols=51 Identities=18% Similarity=0.436 Sum_probs=38.6
Q ss_pred CCCcccccCCcccccC---------------CCCEEcCCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYP---------------NEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~P---------------kDPVQTsCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
.++...|.||...+.. .+.+.+.|.|+|-..|++.|..+ +-.||+||+++.
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCC
Confidence 3556679999975410 12344699999999999999995 459999999764
No 61
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.28 E-value=0.0051 Score=70.97 Aligned_cols=47 Identities=17% Similarity=0.397 Sum_probs=37.2
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHh--hCCCCCCCCcc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVN--TTQACPYDGYL 62 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLk--Ss~sCPvCRkp 62 (1392)
-+++.+|-||-.-+ +=...+.|+|..|.-|..++.. ....|+.||..
T Consensus 58 DEen~~C~ICA~~~--TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE 106 (493)
T COG5236 58 DEENMNCQICAGST--TYSARYPCGHQICHACAVRLRALYMQKGCPLCRTE 106 (493)
T ss_pred ccccceeEEecCCc--eEEEeccCCchHHHHHHHHHHHHHhccCCCccccc
Confidence 45677899999877 3334469999999999988655 56799999964
No 62
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=95.15 E-value=0.0072 Score=68.14 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=39.1
Q ss_pred CCcccccCCcccccC--------CCCEEcCCCCcccHhhHHHHHh--hCCCCCCCCcccccc
Q 000610 15 AGEYFCPVCRLLVYP--------NEALQSQCTHLYCKPCLTYIVN--TTQACPYDGYLVTEA 66 (1392)
Q Consensus 15 eEeLiCPICleVf~P--------kDPVQTsCGHtFCksCIeewLk--Ss~sCPvCRkpIt~s 66 (1392)
.++-.|.||..-+.. .+..+++|+|.|-..||+-|.. ++.+||.|++.+...
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 456789999976511 0223469999999999999987 456999999877543
No 63
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=95.07 E-value=0.017 Score=65.78 Aligned_cols=64 Identities=20% Similarity=0.504 Sum_probs=43.2
Q ss_pred cccCCcccccCCCCEE---cCCCCcccHhhHHHHHhhC-CCCCCCCccccccCCcchhhhHHHHHHHh
Q 000610 19 FCPVCRLLVYPNEALQ---SQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKPLVESNKALAETI 82 (1392)
Q Consensus 19 iCPICleVf~PkDPVQ---TsCGHtFCksCIeewLkSs-~sCPvCRkpIt~sdl~piL~~NkaLeKEI 82 (1392)
.|++|+.-.+....+. ..|+|..|..|+..+...+ ..||.|...+....++--+..|..+++++
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~nfr~q~fED~~vekEv 69 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKNNFRVQTFEDPTVEKEV 69 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhcccchhhcchhHHHHHH
Confidence 4999995332122232 3999999999999998865 59999998776665543233455554443
No 64
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=94.97 E-value=0.0077 Score=75.97 Aligned_cols=51 Identities=18% Similarity=0.421 Sum_probs=38.5
Q ss_pred CCCcccccCCcccccCC----CCEEc-CCCCcccHhhHHHHHhhC--CCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYPN----EALQS-QCTHLYCKPCLTYIVNTT--QACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~Pk----DPVQT-sCGHtFCksCIeewLkSs--~sCPvCRkpIt 64 (1392)
+...-.|+||..++.-. ....| .|.|-|-..|+-+|.+++ .+||.||..++
T Consensus 1466 fsG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1466 FSGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred cCCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 34455699999987100 12335 899999999999999964 59999997664
No 65
>PF02176 zf-TRAF: TRAF-type zinc finger; PDB: 2EOD_A 2YUC_A 3HCU_A 3HCS_B 3HCT_A.
Probab=94.46 E-value=0.01 Score=51.71 Aligned_cols=51 Identities=25% Similarity=0.410 Sum_probs=38.7
Q ss_pred hcceeeecccCCCCCceeecccCCCccCC-CCCCCCcCccCCc----cchhhcHHHHHHH
Q 000610 82 IGKITVHCLFHRSGCTWQGPLSECTSHCS-GCAFGNSPVVCNR----CAIQIVHRQVQEH 136 (1392)
Q Consensus 82 I~qL~VkCpNkk~GCqwsgtLkELesH~e-sCey~~r~V~Cp~----CgeqI~ReeLqeH 136 (1392)
+....|.|++. +|...+...+|.+|.. +|.+. .+.|.+ |++.+.+++|.+|
T Consensus 5 C~~~~v~C~~~--cc~~~i~r~~l~~H~~~~C~~~--~v~C~~~~~GC~~~~~~~~l~~H 60 (60)
T PF02176_consen 5 CPFRPVPCPNG--CCNEMIPRKELDDHLENECPKR--PVPCPYSPYGCKERVPREDLEEH 60 (60)
T ss_dssp STTSEEE-TT----S-BEEECCCHHHHHHTTSTTS--EEE-SS----S--EEEHHHHHHC
T ss_pred CCCCEeeCCCC--CcccceeHHHHHHHHHccCCCC--cEECCCCCCCCCCccchhHHhCC
Confidence 56678999973 6777788999999996 99997 899998 9999999999987
No 66
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.44 E-value=0.019 Score=66.62 Aligned_cols=48 Identities=23% Similarity=0.507 Sum_probs=41.8
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
.|+-+|+||.--- ..+|.+.|+|.-|+.||...+-+.+.|-.|+..+.
T Consensus 420 sEd~lCpICyA~p--i~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~ 467 (489)
T KOG4692|consen 420 SEDNLCPICYAGP--INAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVI 467 (489)
T ss_pred cccccCcceeccc--chhhccCCCCchHHHHHHHHHhcCCeeeEecceee
Confidence 4677899999655 68899999999999999999999999999987654
No 67
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.18 E-value=0.021 Score=67.52 Aligned_cols=88 Identities=20% Similarity=0.368 Sum_probs=53.3
Q ss_pred cccccCCc-ccccCCCCE-EcCCCCcccHhhHHHHHhh------CCCCCC--CCccccccCCcchhhh--HHH----HH-
Q 000610 17 EYFCPVCR-LLVYPNEAL-QSQCTHLYCKPCLTYIVNT------TQACPY--DGYLVTEADSKPLVES--NKA----LA- 79 (1392)
Q Consensus 17 eLiCPICl-eVf~PkDPV-QTsCGHtFCksCIeewLkS------s~sCPv--CRkpIt~sdl~piL~~--Nka----Le- 79 (1392)
..+|.||. +........ ...|+|.||..|+...+.. ...||. |...++......++.. ... ++
T Consensus 146 ~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev~~~~~~~~~C~~~~C~~~l~~~~c~~llt~kl~e~~e~~~~e 225 (384)
T KOG1812|consen 146 KEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEVKLLSGTVIRCPHDGCESRLTLESCRKLLTPKLREMWEQRLKE 225 (384)
T ss_pred cccCccCccccccHhhhHHHhcccchhhhHHhHHHhhhhhccCCCccCCCCCCCccCCHHHHhhhcCHHHHHHHHHHHHH
Confidence 56799999 444111111 2589999999999998873 248885 7666666655444432 111 11
Q ss_pred HHhc-ceeeecccCCCCCceeecccCCC
Q 000610 80 ETIG-KITVHCLFHRSGCTWQGPLSECT 106 (1392)
Q Consensus 80 KEI~-qL~VkCpNkk~GCqwsgtLkELe 106 (1392)
+.+. .-+++|++. .|.+.+...++.
T Consensus 226 ~~i~~~~~~ycp~~--~C~~l~~~~el~ 251 (384)
T KOG1812|consen 226 EVIPSLDRVYCPYP--RCSSLMSKTELS 251 (384)
T ss_pred HhhhhhhcccCCCC--CchHhhhhhhhc
Confidence 1111 114489884 898877766654
No 68
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.09 E-value=0.035 Score=48.73 Aligned_cols=44 Identities=20% Similarity=0.497 Sum_probs=23.6
Q ss_pred ccCCcccccCCCC--EEcCCCCcccHhhHHHHHhh-CCCCCCCCccc
Q 000610 20 CPVCRLLVYPNEA--LQSQCTHLYCKPCLTYIVNT-TQACPYDGYLV 63 (1392)
Q Consensus 20 CPICleVf~PkDP--VQTsCGHtFCksCIeewLkS-s~sCPvCRkpI 63 (1392)
|++|.+.+..++- .-+.|+..+|..|+.+.+++ +..||.||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 7899987722221 22799999999999999974 67999999864
No 69
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=93.86 E-value=0.026 Score=62.90 Aligned_cols=49 Identities=20% Similarity=0.560 Sum_probs=35.1
Q ss_pred ccccCCcccccCCCCE-EcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCc
Q 000610 18 YFCPVCRLLVYPNEAL-QSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSK 69 (1392)
Q Consensus 18 LiCPICleVf~PkDPV-QTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~ 69 (1392)
..|-.|...-. .+++ .|.|.|+||..|...... ..|++|++.+....+.
T Consensus 4 VhCn~C~~~~~-~~~f~LTaC~HvfC~~C~k~~~~--~~C~lCkk~ir~i~l~ 53 (233)
T KOG4739|consen 4 VHCNKCFRFPS-QDPFFLTACRHVFCEPCLKASSP--DVCPLCKKSIRIIQLN 53 (233)
T ss_pred EEeccccccCC-CCceeeeechhhhhhhhcccCCc--cccccccceeeeeecc
Confidence 45888876552 3443 379999999999965433 3999999987655543
No 70
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=93.78 E-value=0.021 Score=63.61 Aligned_cols=68 Identities=21% Similarity=0.490 Sum_probs=44.5
Q ss_pred CcccccCCcccccCCCCEE---c-CCCCcccHhhHHHHHhhCC-CCC--CCCccccccCCcchhhhHHHHHHHhc
Q 000610 16 GEYFCPVCRLLVYPNEALQ---S-QCTHLYCKPCLTYIVNTTQ-ACP--YDGYLVTEADSKPLVESNKALAETIG 83 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ---T-sCGHtFCksCIeewLkSs~-sCP--vCRkpIt~sdl~piL~~NkaLeKEI~ 83 (1392)
++-.||||..-.+...-+. . .|-|..|.+|..+++.... .|| -|.+.+...+++.-++.|..+++++.
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~kILRK~kf~~qtFeD~~vEkEvd 83 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGKILRKIKFIKQTFEDITVEKEVD 83 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHHHHHHhcccccccchhhhhhhhh
Confidence 3457999995332122222 2 6999999999999998764 899 58877665554333344555555544
No 71
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.65 E-value=0.035 Score=65.65 Aligned_cols=51 Identities=22% Similarity=0.440 Sum_probs=36.8
Q ss_pred CcccccCCcccc-cCCCC--EEcCCCCcccHhhHHHHHhh--CCCCCCCCcccccc
Q 000610 16 GEYFCPVCRLLV-YPNEA--LQSQCTHLYCKPCLTYIVNT--TQACPYDGYLVTEA 66 (1392)
Q Consensus 16 EeLiCPICleVf-~PkDP--VQTsCGHtFCksCIeewLkS--s~sCPvCRkpIt~s 66 (1392)
.-.+|+||++-+ ++.+- +...|||.|-..||++|+-+ ...||.|...-+..
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~katkr 58 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKATKR 58 (463)
T ss_pred ccccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChhHHH
Confidence 446899999765 12222 23599999999999999963 35899997654433
No 72
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=93.45 E-value=0.021 Score=71.70 Aligned_cols=51 Identities=22% Similarity=0.602 Sum_probs=41.3
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC--CCCCCCCccccccC
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT--QACPYDGYLVTEAD 67 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs--~sCPvCRkpIt~sd 67 (1392)
|...+.|.||.+ . +.++.+.|+|.||..|+.+.+... ..||.||..+...+
T Consensus 451 l~~~~~c~ic~~-~--~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~ 503 (674)
T KOG1001|consen 451 LSVSHWCHICCD-L--DSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKK 503 (674)
T ss_pred Hhhccccccccc-c--ccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHH
Confidence 333389999999 6 799999999999999999998743 37999997665433
No 73
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=93.29 E-value=0.066 Score=61.65 Aligned_cols=47 Identities=23% Similarity=0.517 Sum_probs=33.1
Q ss_pred CCCC-cccccCCcccccCCCC-EEcCCCCcccHhhHHHHHhhCCCCCCCCccc
Q 000610 13 SLAG-EYFCPVCRLLVYPNEA-LQSQCTHLYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 13 ~LeE-eLiCPICleVf~PkDP-VQTsCGHtFCksCIeewLkSs~sCPvCRkpI 63 (1392)
.|.. .-+|--|...+ ... .++.|.|+||.+|...- ..+.||.|...|
T Consensus 85 ~l~p~VHfCd~Cd~PI--~IYGRmIPCkHvFCl~CAr~~--~dK~Cp~C~d~V 133 (389)
T KOG2932|consen 85 QLGPRVHFCDRCDFPI--AIYGRMIPCKHVFCLECARSD--SDKICPLCDDRV 133 (389)
T ss_pred ccCcceEeecccCCcc--eeeecccccchhhhhhhhhcC--ccccCcCcccHH
Confidence 3444 45688898766 332 34799999999998543 246999997654
No 74
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.24 E-value=0.066 Score=55.54 Aligned_cols=49 Identities=18% Similarity=0.390 Sum_probs=40.7
Q ss_pred CcccccCCcccccCCCCEE----cCCCCcccHhhHHHHHhhC---CCCCCCCcccccc
Q 000610 16 GEYFCPVCRLLVYPNEALQ----SQCTHLYCKPCLTYIVNTT---QACPYDGYLVTEA 66 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ----TsCGHtFCksCIeewLkSs---~sCPvCRkpIt~s 66 (1392)
..+.|-||.+.. .|..- .+||-..|.-|...+|+.. ..||+|+..+...
T Consensus 79 ~lYeCnIC~etS--~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETS--AEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCccccc--chhhcCCcccccchHHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 678999999998 55544 3999999999999999853 6999999987654
No 75
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.89 E-value=0.05 Score=64.52 Aligned_cols=37 Identities=30% Similarity=0.707 Sum_probs=33.4
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT 52 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS 52 (1392)
++|+|.|+||..++ .+|+++.|+|..|.-|....+..
T Consensus 1 meeelkc~vc~~f~--~epiil~c~h~lc~~ca~~~~~~ 37 (699)
T KOG4367|consen 1 MEEELKCPVCGSFY--REPIILPCSHNLCQACARNILVQ 37 (699)
T ss_pred CcccccCceehhhc--cCceEeecccHHHHHHHHhhccc
Confidence 47899999999999 89999999999999999977654
No 76
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.82 E-value=0.018 Score=65.67 Aligned_cols=44 Identities=20% Similarity=0.564 Sum_probs=36.9
Q ss_pred CCcccccCCcccccCCCCEEcCCCCc-ccHhhHHHHHhhCCCCCCCCcccc
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHL-YCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHt-FCksCIeewLkSs~sCPvCRkpIt 64 (1392)
..+.+|.||.+.. .|.|.+.|||. -|..|=.+. ..||+||+.|.
T Consensus 298 ~~~~LC~ICmDaP--~DCvfLeCGHmVtCt~CGkrm----~eCPICRqyi~ 342 (350)
T KOG4275|consen 298 ATRRLCAICMDAP--RDCVFLECGHMVTCTKCGKRM----NECPICRQYIV 342 (350)
T ss_pred hHHHHHHHHhcCC--cceEEeecCcEEeehhhcccc----ccCchHHHHHH
Confidence 3478999999999 89999999997 588887665 49999998653
No 77
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.81 E-value=0.042 Score=67.67 Aligned_cols=41 Identities=29% Similarity=0.677 Sum_probs=31.3
Q ss_pred CCcccccCCccccc--CCCCEEcCCCCcccHhhHHHHHhhCCCCC
Q 000610 15 AGEYFCPVCRLLVY--PNEALQSQCTHLYCKPCLTYIVNTTQACP 57 (1392)
Q Consensus 15 eEeLiCPICleVf~--PkDPVQTsCGHtFCksCIeewLkSs~sCP 57 (1392)
.+.|+|+||++.|. ...||.+.|||+.|+.|++...+ ..||
T Consensus 9 ~~~l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~lyn--~scp 51 (861)
T KOG3161|consen 9 VLLLLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLLYN--ASCP 51 (861)
T ss_pred HHHhhchHHHHHHHHHhcCcccccccchHHHHHHHhHhh--ccCC
Confidence 45578999986651 13577789999999999999876 4565
No 78
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.42 E-value=0.069 Score=62.98 Aligned_cols=42 Identities=29% Similarity=0.595 Sum_probs=31.7
Q ss_pred ccccCCcccccCCCC-EE-c-CCCCcccHhhHHHHHhh---CCCCCCCC
Q 000610 18 YFCPVCRLLVYPNEA-LQ-S-QCTHLYCKPCLTYIVNT---TQACPYDG 60 (1392)
Q Consensus 18 LiCPICleVf~PkDP-VQ-T-sCGHtFCksCIeewLkS---s~sCPvCR 60 (1392)
-+|.||-+.+ |.+- +. + .|||+|-..|+..|... ++.||+|+
T Consensus 5 A~C~Ic~d~~-p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 5 AECHICIDGR-PNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred ceeeEeccCC-ccccccccccchhhHHHHHHHHHHHccCCccCCCCcee
Confidence 4799996554 2221 11 2 79999999999999985 36899998
No 79
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=92.29 E-value=0.1 Score=50.15 Aligned_cols=31 Identities=26% Similarity=0.536 Sum_probs=28.1
Q ss_pred CCCCcccHhhHHHHHhhCCCCCCCCcccccc
Q 000610 36 QCTHLYCKPCLTYIVNTTQACPYDGYLVTEA 66 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs~sCPvCRkpIt~s 66 (1392)
.|.|.|=..||.+|+.+...||+||..+...
T Consensus 53 ~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~ 83 (88)
T COG5194 53 VCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA 83 (88)
T ss_pred ecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence 7999999999999999999999999876543
No 80
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=92.15 E-value=0.071 Score=61.82 Aligned_cols=49 Identities=24% Similarity=0.539 Sum_probs=39.3
Q ss_pred CCCcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
..+.-.|+||+.-. .+|.. ..-|-+||..||-.++++...||+-.++..
T Consensus 297 ~~~~~~CpvClk~r--~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~~ 346 (357)
T KOG0826|consen 297 PPDREVCPVCLKKR--QNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPAS 346 (357)
T ss_pred CCccccChhHHhcc--CCCceEEecceEEeHHHHHHHHHhcCCCCccCCcch
Confidence 45667899999766 45544 577999999999999998899999766543
No 81
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=92.03 E-value=0.038 Score=69.04 Aligned_cols=54 Identities=20% Similarity=0.476 Sum_probs=43.2
Q ss_pred cCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC---CCCCCCCccccccC
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT---QACPYDGYLVTEAD 67 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs---~sCPvCRkpIt~sd 67 (1392)
..+...+.|+||+..+ .+++.+.|.|.||..|+...+... ..|++|+..+....
T Consensus 16 ~~~~k~lEc~ic~~~~--~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK~s 72 (684)
T KOG4362|consen 16 NAMQKILECPICLEHV--KEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEKRS 72 (684)
T ss_pred HHHhhhccCCceeEEe--eccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhhhh
Confidence 4566778999999988 688889999999999999866543 48999986654433
No 82
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=91.89 E-value=0.066 Score=49.56 Aligned_cols=49 Identities=18% Similarity=0.329 Sum_probs=23.9
Q ss_pred cccccCCcccccC--CCCEE-c---CCCCcccHhhHHHHHhhC-----------CCCCCCCccccc
Q 000610 17 EYFCPVCRLLVYP--NEALQ-S---QCTHLYCKPCLTYIVNTT-----------QACPYDGYLVTE 65 (1392)
Q Consensus 17 eLiCPICleVf~P--kDPVQ-T---sCGHtFCksCIeewLkSs-----------~sCPvCRkpIt~ 65 (1392)
++.|.||...+.. ..++. + .|+..|=..||.+|+... ..||.|++.|..
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~ 67 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISW 67 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEG
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeE
Confidence 4789999987621 11322 3 789999999999999841 169999998764
No 83
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.82 E-value=0.17 Score=56.91 Aligned_cols=46 Identities=17% Similarity=0.436 Sum_probs=36.4
Q ss_pred ccccCCcccccC----CCCEEcCCCCcccHhhHHHHHhhC-CCCCCCCccc
Q 000610 18 YFCPVCRLLVYP----NEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLV 63 (1392)
Q Consensus 18 LiCPICleVf~P----kDPVQTsCGHtFCksCIeewLkSs-~sCPvCRkpI 63 (1392)
+.|-||.+.+.- ..|..+.|||+||..|+.+++... ..||.||...
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 569999977621 225556899999999999998864 5899999873
No 84
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=91.38 E-value=0.1 Score=47.04 Aligned_cols=50 Identities=24% Similarity=0.489 Sum_probs=39.1
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccC
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEAD 67 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sd 67 (1392)
+..+..|-.|...- ...+.+.|+|+.|..|+.-+ +-.-||.|.+++..++
T Consensus 4 ~~~~~~~~~~~~~~--~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~~~ 53 (55)
T PF14447_consen 4 QQPEQPCVFCGFVG--TKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEFDD 53 (55)
T ss_pred cccceeEEEccccc--cccccccccceeeccccChh--hccCCCCCCCcccCCC
Confidence 34556788888876 57788899999999999654 2368999999887654
No 85
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=91.14 E-value=0.046 Score=71.58 Aligned_cols=54 Identities=20% Similarity=0.510 Sum_probs=45.0
Q ss_pred cccccCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCcc
Q 000610 8 ILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYL 62 (1392)
Q Consensus 8 IvfVE~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkp 62 (1392)
+.++.++.+...|.||++++. .--.+..|||.+|..|+..|+.....|++|...
T Consensus 1144 ~~y~~~~~~~~~c~ic~dil~-~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi 1197 (1394)
T KOG0298|consen 1144 VRYLMNLSGHFVCEICLDILR-NQGGIAGCGHEPCCRCDELWLYASSRCPICKSI 1197 (1394)
T ss_pred HHHHHHhhcccchHHHHHHHH-hcCCeeeechhHhhhHHHHHHHHhccCcchhhh
Confidence 344566778889999999992 255667999999999999999999999999854
No 86
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.72 E-value=0.19 Score=60.27 Aligned_cols=53 Identities=28% Similarity=0.563 Sum_probs=38.6
Q ss_pred CCcccccCCcccccCCC-CEEcCCCCcccHhhHHHHHhhC--------CCCCC--CCccccccCCc
Q 000610 15 AGEYFCPVCRLLVYPNE-ALQSQCTHLYCKPCLTYIVNTT--------QACPY--DGYLVTEADSK 69 (1392)
Q Consensus 15 eEeLiCPICleVf~PkD-PVQTsCGHtFCksCIeewLkSs--------~sCPv--CRkpIt~sdl~ 69 (1392)
.....|.||.+-+ .. .+...|+|.||..|+..++.++ .+||. |+..+....+.
T Consensus 68 ~~~~~c~ic~~~~--~~~~~~~~c~H~~c~~cw~~yl~~kI~~~~~~~i~cp~~~C~a~v~~~~i~ 131 (444)
T KOG1815|consen 68 KGDVQCGICVESY--DGEIIGLGCGHPFCPPCWTGYLGTKIHEGEEAKIKCPAHGCPALVGEDTVE 131 (444)
T ss_pred CccccCCcccCCC--cchhhhcCCCcHHHHHHHHHHhhheeeccccccccCCCCCccccCCCceee
Confidence 3447899999888 43 4556999999999999998863 25774 76665544443
No 87
>smart00586 ZnF_DBF Zinc finger in DBF-like proteins.
Probab=90.67 E-value=0.062 Score=47.39 Aligned_cols=30 Identities=27% Similarity=0.628 Sum_probs=26.6
Q ss_pred CcceeEeecccccccCccccchhHHHHhhhhhh
Q 000610 1321 MGWCRICKVDCETVDGLDLHSQTREHQKMAMDM 1353 (1392)
Q Consensus 1321 ~~wcric~~~c~tve~l~~h~~trehq~~amd~ 1353 (1392)
-|+|-||.+ ..|+|+.|+.||+|++=|++=
T Consensus 5 ~GYCE~Cr~---kfd~l~~Hi~s~~Hr~FA~~~ 34 (49)
T smart00586 5 PGYCENCRE---KYDDLETHLLSEKHRRFAENN 34 (49)
T ss_pred CcccccHhH---HHhhHHHHhccHHHHHHHcCc
Confidence 589999976 589999999999999999863
No 88
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=90.66 E-value=0.19 Score=57.44 Aligned_cols=119 Identities=18% Similarity=0.322 Sum_probs=69.6
Q ss_pred CCCcccccCCcccccCCCC------------------EEc-CCCCcccH-hhHHHHHhhC---CCCCCCCccccccCCcc
Q 000610 14 LAGEYFCPVCRLLVYPNEA------------------LQS-QCTHLYCK-PCLTYIVNTT---QACPYDGYLVTEADSKP 70 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDP------------------VQT-sCGHtFCk-sCIeewLkSs---~sCPvCRkpIt~sdl~p 70 (1392)
....+.|+-|...+ ... ..| .|+..|=. .-|...+++. ..|.+|++.|....+
T Consensus 127 ~~~r~~c~eCgk~y--sT~snLsrHkQ~H~~~~s~ka~~C~~C~K~YvSmpALkMHirTH~l~c~C~iCGKaFSRPWL-- 202 (279)
T KOG2462|consen 127 KHPRYKCPECGKSY--STSSNLSRHKQTHRSLDSKKAFSCKYCGKVYVSMPALKMHIRTHTLPCECGICGKAFSRPWL-- 202 (279)
T ss_pred cCCceecccccccc--ccccccchhhcccccccccccccCCCCCceeeehHHHhhHhhccCCCcccccccccccchHH--
Confidence 56678899998766 111 112 34433322 2233333432 378888887765442
Q ss_pred hhhhHHHHHHHhcceeeecccCCCCCceee-cccCCCccCCCCCCCCcCccCCccchhhcHHH-HHHHHh-cCCCCC
Q 000610 71 LVESNKALAETIGKITVHCLFHRSGCTWQG-PLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQ-VQEHAQ-NCPGVQ 144 (1392)
Q Consensus 71 iL~~NkaLeKEI~qL~VkCpNkk~GCqwsg-tLkELesH~esCey~~r~V~Cp~CgeqI~Ree-LqeHLq-~CPk~p 144 (1392)
+...|+.-..+..+.|+. |...+ ...+|+.|+.+-.-. ....|..|++.+.++. |..|++ .|.+..
T Consensus 203 ---LQGHiRTHTGEKPF~C~h----C~kAFADRSNLRAHmQTHS~~-K~~qC~~C~KsFsl~SyLnKH~ES~C~~~~ 271 (279)
T KOG2462|consen 203 ---LQGHIRTHTGEKPFSCPH----CGKAFADRSNLRAHMQTHSDV-KKHQCPRCGKSFALKSYLNKHSESACLKYL 271 (279)
T ss_pred ---hhcccccccCCCCccCCc----ccchhcchHHHHHHHHhhcCC-ccccCcchhhHHHHHHHHHHhhhhcccccc
Confidence 234556666677777774 55443 355677777554443 3678888888877654 677876 476653
No 89
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.48 E-value=0.13 Score=60.22 Aligned_cols=46 Identities=24% Similarity=0.451 Sum_probs=35.5
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
+.-...|-||++-. .+.+...|||+.| |..-.. ....||+||..|.
T Consensus 302 ~~~p~lcVVcl~e~--~~~~fvpcGh~cc--ct~cs~-~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 302 LPQPDLCVVCLDEP--KSAVFVPCGHVCC--CTLCSK-HLPQCPVCRQRIR 347 (355)
T ss_pred cCCCCceEEecCCc--cceeeecCCcEEE--chHHHh-hCCCCchhHHHHH
Confidence 45567899999988 7888899999987 665432 2346999998764
No 90
>PHA03096 p28-like protein; Provisional
Probab=90.29 E-value=0.19 Score=57.69 Aligned_cols=44 Identities=16% Similarity=0.328 Sum_probs=32.6
Q ss_pred ccccCCcccccCCCCEE-------cCCCCcccHhhHHHHHhhC---CCCCCCCcc
Q 000610 18 YFCPVCRLLVYPNEALQ-------SQCTHLYCKPCLTYIVNTT---QACPYDGYL 62 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQ-------TsCGHtFCksCIeewLkSs---~sCPvCRkp 62 (1392)
-+|.||++.... .++. ..|.|.||..|+..|.... ..|+.||..
T Consensus 179 k~c~ic~e~~~~-k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~ 232 (284)
T PHA03096 179 KICGICLENIKA-KYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRL 232 (284)
T ss_pred hhcccchhhhhh-hccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccch
Confidence 679999987632 2222 3999999999999998853 467777653
No 91
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=89.90 E-value=0.34 Score=42.28 Aligned_cols=42 Identities=21% Similarity=0.477 Sum_probs=31.7
Q ss_pred cccCCcccccCCCCEEcCCC-----CcccHhhHHHHHhhC--CCCCCCC
Q 000610 19 FCPVCRLLVYPNEALQSQCT-----HLYCKPCLTYIVNTT--QACPYDG 60 (1392)
Q Consensus 19 iCPICleVf~PkDPVQTsCG-----HtFCksCIeewLkSs--~sCPvCR 60 (1392)
+|-||++.....++++..|. +.+=..||.+|+..+ ..|++|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 48999973333566776664 778899999999854 4899995
No 92
>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A.
Probab=89.86 E-value=0.043 Score=40.48 Aligned_cols=24 Identities=25% Similarity=0.707 Sum_probs=23.2
Q ss_pred ceeEeecccccccCccccchhHHH
Q 000610 1323 WCRICKVDCETVDGLDLHSQTREH 1346 (1392)
Q Consensus 1323 wcric~~~c~tve~l~~h~~treh 1346 (1392)
||.||++.|.+...|..|.+.+.|
T Consensus 2 ~C~~C~~~f~s~~~~~~H~~s~~H 25 (25)
T PF12874_consen 2 YCDICNKSFSSENSLRQHLRSKKH 25 (25)
T ss_dssp EETTTTEEESSHHHHHHHHTTHHH
T ss_pred CCCCCCCCcCCHHHHHHHHCcCCC
Confidence 799999999999999999999988
No 93
>PF07535 zf-DBF: DBF zinc finger; InterPro: IPR006572 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. In eukaryotes, initiation of DNA replication requires the assembly of pre-replication complexes (pre-RCs) on chromatin during the G1 phase. In the S phase, pre-RCs are activated by two protein kinases, Cdk2 and Cdc7, which results in the loading of replication factors and the unwinding of replication origins by the MCM helicase complex []. Cdc7 is a serine/threonine kinase that is conserved from yeast to human. It is regulated by its association with a regulatory subunit, the Dbf4 protein. This complex is often referred to as DDK (Dbf4-dependent kinase) []. DBF4 contains an N-terminal BRCT domain and a C-terminal conserved region that could potentially coordinate one zinc atom, the DBF4-type zinc finger. This entry represents the zinc finger, which is important for the interaction with Cdc7 [, ]. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003676 nucleic acid binding, 0008270 zinc ion binding
Probab=89.81 E-value=0.13 Score=45.36 Aligned_cols=29 Identities=38% Similarity=0.777 Sum_probs=26.0
Q ss_pred CcceeEeecccccccCccccchhHHHHhhhhh
Q 000610 1321 MGWCRICKVDCETVDGLDLHSQTREHQKMAMD 1352 (1392)
Q Consensus 1321 ~~wcric~~~c~tve~l~~h~~trehq~~amd 1352 (1392)
-|+|-+|++ ..|+|+.|++++.|++-|+|
T Consensus 5 ~GYCE~C~~---ky~~l~~Hi~s~~Hr~FA~~ 33 (49)
T PF07535_consen 5 PGYCENCRV---KYDDLEEHIQSEKHRKFAEN 33 (49)
T ss_pred CccCccccc---hhhhHHHHhCCHHHHHHHcC
Confidence 589999986 68899999999999999965
No 94
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=86.81 E-value=0.35 Score=58.54 Aligned_cols=46 Identities=20% Similarity=0.475 Sum_probs=34.7
Q ss_pred cCCCCcccccCC-cccccCCCCEEc--CCCCcccHhhHHHHHhhCCCCCCCC
Q 000610 12 QSLAGEYFCPVC-RLLVYPNEALQS--QCTHLYCKPCLTYIVNTTQACPYDG 60 (1392)
Q Consensus 12 E~LeEeLiCPIC-leVf~PkDPVQT--sCGHtFCksCIeewLkSs~sCPvCR 60 (1392)
-.+++.+.|.+| +.++ .+.+++ +|.-.||..||+..+... .|+.|.
T Consensus 214 ~~~~e~~~c~~~~~~~~--~~~~l~~~~~~~~~~~~~i~~~l~~~-~~~~c~ 262 (448)
T KOG0314|consen 214 GELPEGLQCPLCGKEVM--LDAALLSKCCLKSFCDKCIRDALISK-SMCVCG 262 (448)
T ss_pred ccCCccccCceecchhh--HHHHHhhhhhcccCCccccccccccc-cCCcch
Confidence 357889999999 6777 677775 999999999999866532 344443
No 95
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.20 E-value=0.26 Score=56.89 Aligned_cols=51 Identities=18% Similarity=0.346 Sum_probs=36.1
Q ss_pred CcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhh-----------------------CCCCCCCCcccccc
Q 000610 16 GEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNT-----------------------TQACPYDGYLVTEA 66 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkS-----------------------s~sCPvCRkpIt~s 66 (1392)
-+-.|.||+.-|-..+.++ |.|.|.|-..||.+++.. ...||+||..|..+
T Consensus 114 p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 114 PNGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 3456999997663233344 799999999999987742 12699998876543
No 96
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=85.70 E-value=0.3 Score=57.87 Aligned_cols=46 Identities=33% Similarity=0.689 Sum_probs=36.2
Q ss_pred cccccCCcccccC-CCCEE-cCCCCcccHhhHHHHHhhC--CCCCCCCcc
Q 000610 17 EYFCPVCRLLVYP-NEALQ-SQCTHLYCKPCLTYIVNTT--QACPYDGYL 62 (1392)
Q Consensus 17 eLiCPICleVf~P-kDPVQ-TsCGHtFCksCIeewLkSs--~sCPvCRkp 62 (1392)
.|.|..|.+.+-. .+-.+ +.|.|+|-.+|+.+++.++ .+||.||+.
T Consensus 365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl 414 (518)
T KOG1941|consen 365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL 414 (518)
T ss_pred hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence 5789999987622 23344 5999999999999999754 699999954
No 97
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.39 E-value=0.56 Score=53.09 Aligned_cols=39 Identities=8% Similarity=0.053 Sum_probs=34.5
Q ss_pred ccCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHh
Q 000610 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVN 51 (1392)
Q Consensus 11 VE~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLk 51 (1392)
.+.+.+--.|++|+..+ .+||+|.=||+||+.||.+++.
T Consensus 37 rDsiK~FdcCsLtLqPc--~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 37 RDSIKPFDCCSLTLQPC--RDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred ccccCCcceeeeecccc--cCCccCCCCeeeeHHHHHHHHH
Confidence 45677777899999999 8999999999999999999874
No 98
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=83.73 E-value=0.7 Score=58.32 Aligned_cols=41 Identities=20% Similarity=0.527 Sum_probs=25.1
Q ss_pred ccCCcccccCCCCEEcCCCC-cccHhhHHHHHh--h----CCCCCCCCcc
Q 000610 20 CPVCRLLVYPNEALQSQCTH-LYCKPCLTYIVN--T----TQACPYDGYL 62 (1392)
Q Consensus 20 CPICleVf~PkDPVQTsCGH-tFCksCIeewLk--S----s~sCPvCRkp 62 (1392)
|.||..-. .-...-.|+| ..|..|..+... . ...|++|+..
T Consensus 3 c~ic~~s~--~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~ 50 (669)
T KOG2231|consen 3 CAICAFSP--DFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRRE 50 (669)
T ss_pred cceeecCc--cccccccccccccchhhhhhhhhhcccccccccCcccccc
Confidence 77777655 3333347887 778888776543 2 2356777763
No 99
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.78 E-value=1 Score=51.90 Aligned_cols=47 Identities=19% Similarity=0.489 Sum_probs=34.0
Q ss_pred CCcccccCCcccccCCCCEE--c--CCCCcccHhhHHHHHhhC-----CCCCC-CCccc
Q 000610 15 AGEYFCPVCRLLVYPNEALQ--S--QCTHLYCKPCLTYIVNTT-----QACPY-DGYLV 63 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ--T--sCGHtFCksCIeewLkSs-----~sCPv-CRkpI 63 (1392)
..-|+|.||.+-| .|.-. | .-.|.||..|-++.|+.. ..||. +++++
T Consensus 266 ~apLcCTLC~ERL--EDTHFVQCPSVp~HKFCFPCSResIK~Qg~sgevYCPSGdkCPL 322 (352)
T KOG3579|consen 266 SAPLCCTLCHERL--EDTHFVQCPSVPSHKFCFPCSRESIKQQGASGEVYCPSGDKCPL 322 (352)
T ss_pred CCceeehhhhhhh--ccCceeecCCCcccceecccCHHHHHhhcCCCceeCCCCCcCcc
Confidence 3459999999999 66644 4 446999999999999852 36664 34443
No 100
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=82.36 E-value=0.72 Score=48.20 Aligned_cols=44 Identities=11% Similarity=0.351 Sum_probs=33.4
Q ss_pred cccccCCcccccCCC--CEE-cCCC------CcccHhhHHHHHhhCCCCCCCCcc
Q 000610 17 EYFCPVCRLLVYPNE--ALQ-SQCT------HLYCKPCLTYIVNTTQACPYDGYL 62 (1392)
Q Consensus 17 eLiCPICleVf~PkD--PVQ-TsCG------HtFCksCIeewLkSs~sCPvCRkp 62 (1392)
...|.||++.+ .+ -|+ ..|+ |+||..|+.+|.+....-|.=|..
T Consensus 26 ~~EC~IC~~~I--~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPfnR~I 78 (134)
T PF05883_consen 26 TVECQICFDRI--DNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPFNRNI 78 (134)
T ss_pred Ceeehhhhhhh--hcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCcccce
Confidence 67899999888 44 555 4666 679999999997666677766653
No 101
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=81.76 E-value=0.99 Score=60.01 Aligned_cols=61 Identities=18% Similarity=0.442 Sum_probs=42.5
Q ss_pred CCCCcccccCCcc-cccCCCCEEcCCCCcccHhhHHHHHhhC----------CCCCCCCccccccCCcchhh
Q 000610 13 SLAGEYFCPVCRL-LVYPNEALQSQCTHLYCKPCLTYIVNTT----------QACPYDGYLVTEADSKPLVE 73 (1392)
Q Consensus 13 ~LeEeLiCPICle-Vf~PkDPVQTsCGHtFCksCIeewLkSs----------~sCPvCRkpIt~sdl~piL~ 73 (1392)
.-+.+-+|-||.. .+.-..++++.|+|+|-..|.++.+++. ..||+|...|...-++.++.
T Consensus 3482 kQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~~LkDLld 3553 (3738)
T KOG1428|consen 3482 KQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHIVLKDLLD 3553 (3738)
T ss_pred hcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhHHHHHHHH
Confidence 3455678999984 3321345668999999999999888752 38999998776544433333
No 102
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=81.38 E-value=0.59 Score=44.95 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=25.1
Q ss_pred CCCCcccHhhHHHHHhhC---CCCCCCCcccc
Q 000610 36 QCTHLYCKPCLTYIVNTT---QACPYDGYLVT 64 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs---~sCPvCRkpIt 64 (1392)
.|.|.|=..||.+|+... ..||+||..+.
T Consensus 50 ~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 50 YCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred HHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 899999999999999853 48999998764
No 103
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=81.13 E-value=0.97 Score=57.12 Aligned_cols=40 Identities=10% Similarity=0.176 Sum_probs=31.8
Q ss_pred CcCccCCccchhhcHH-HHHHHHhc-CCCCCCCCCCCCCccc
Q 000610 116 NSPVVCNRCAIQIVHR-QVQEHAQN-CPGVQPQASQPEGVHD 155 (1392)
Q Consensus 116 ~r~V~Cp~CgeqI~Re-eLqeHLq~-CPk~pVkCPqcdgt~s 155 (1392)
.|.++|..|++.+.++ .|++|+.. .-..+.+|+.|+-+++
T Consensus 279 lRKFKCtECgKAFKfKHHLKEHlRIHSGEKPfeCpnCkKRFS 320 (1007)
T KOG3623|consen 279 LRKFKCTECGKAFKFKHHLKEHLRIHSGEKPFECPNCKKRFS 320 (1007)
T ss_pred hccccccccchhhhhHHHHHhhheeecCCCCcCCcccccccc
Confidence 4689999999998865 68999985 5557899999994444
No 104
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=80.39 E-value=1.3 Score=52.88 Aligned_cols=61 Identities=18% Similarity=0.371 Sum_probs=53.6
Q ss_pred eeeecccCCCCCceeecccCCCccC-CCCCCCCcCccCCccchhhcHHHHHHHHhcCCCCCCCCCCCC
Q 000610 85 ITVHCLFHRSGCTWQGPLSECTSHC-SGCAFGNSPVVCNRCAIQIVHRQVQEHAQNCPGVQPQASQPE 151 (1392)
Q Consensus 85 L~VkCpNkk~GCqwsgtLkELesH~-esCey~~r~V~Cp~CgeqI~ReeLqeHLq~CPk~pVkCPqcd 151 (1392)
..+.|++ +|...+..+++++|+ ..|.+. ...|..|+..+....+..|... +...+.|....
T Consensus 113 ~~~~C~~---~C~~~~~~~d~~~hl~~~C~~~--~~~c~~~~~~~~~~~~~~h~~~-~~~~~~c~~k~ 174 (391)
T KOG0297|consen 113 DPLKCPH---RCGVQVPRDDLEDHLEAECPRR--SLKCSLCQSDSILILLEAHEEN-PQAEVSCELKC 174 (391)
T ss_pred CcccCcc---ccccccchHHHHHHHhcccccc--cccchhhcCccchhhhhhcCCC-CCccccccccc
Confidence 5788987 499999999999998 889997 8999999999999999999888 78888888755
No 105
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=79.86 E-value=1.4 Score=44.56 Aligned_cols=28 Identities=25% Similarity=0.587 Sum_probs=25.9
Q ss_pred CCCCcccHhhHHHHHhhCCCCCCCCccc
Q 000610 36 QCTHLYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs~sCPvCRkpI 63 (1392)
.|.|.|=.-||.+|+++...||+|.+.-
T Consensus 80 ~CNHaFH~hCisrWlktr~vCPLdn~eW 107 (114)
T KOG2930|consen 80 VCNHAFHFHCISRWLKTRNVCPLDNKEW 107 (114)
T ss_pred ecchHHHHHHHHHHHhhcCcCCCcCcce
Confidence 7999999999999999999999998753
No 106
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.41 E-value=1.5 Score=52.46 Aligned_cols=51 Identities=22% Similarity=0.405 Sum_probs=39.5
Q ss_pred CCCcccccCCccccc-CCCCEEcCCCCcccHhhHHHHHhhC---CCCCCCCcccc
Q 000610 14 LAGEYFCPVCRLLVY-PNEALQSQCTHLYCKPCLTYIVNTT---QACPYDGYLVT 64 (1392)
Q Consensus 14 LeEeLiCPICleVf~-PkDPVQTsCGHtFCksCIeewLkSs---~sCPvCRkpIt 64 (1392)
....|+|||=++--. ...|+.+.|||+.|+.-|.+..++. .+||.|-....
T Consensus 331 fHSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~e~~ 385 (394)
T KOG2817|consen 331 FHSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPVEQL 385 (394)
T ss_pred ccceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCcccC
Confidence 345678999886442 2457889999999999999998864 58999976543
No 107
>smart00451 ZnF_U1 U1-like zinc finger. Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.
Probab=78.37 E-value=0.65 Score=36.59 Aligned_cols=29 Identities=21% Similarity=0.524 Sum_probs=26.1
Q ss_pred cceeEeecccccccCccccchhHHHHhhh
Q 000610 1322 GWCRICKVDCETVDGLDLHSQTREHQKMA 1350 (1392)
Q Consensus 1322 ~wcric~~~c~tve~l~~h~~trehq~~a 1350 (1392)
-||-+|++.+.+...|..|..++.|.+..
T Consensus 4 ~~C~~C~~~~~~~~~~~~H~~gk~H~~~~ 32 (35)
T smart00451 4 FYCKLCNVTFTDEISVEAHLKGKKHKKNV 32 (35)
T ss_pred eEccccCCccCCHHHHHHHHChHHHHHHH
Confidence 48999999999999999999999997753
No 108
>KOG0006 consensus E3 ubiquitin-protein ligase (Parkin protein) [Posttranslational modification, protein turnover, chaperones]
Probab=78.23 E-value=3.1 Score=48.73 Aligned_cols=115 Identities=17% Similarity=0.288 Sum_probs=67.1
Q ss_pred cCCCCcccccCCcccccCCCCEE-cCCC--CcccHhhHHHHHhhC---------------CCCCC-CCcccccc-CCcch
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQ-SQCT--HLYCKPCLTYIVNTT---------------QACPY-DGYLVTEA-DSKPL 71 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQ-TsCG--HtFCksCIeewLkSs---------------~sCPv-CRkpIt~s-dl~pi 71 (1392)
..-..+..|..|.++- ++|. ..|. |+.|.+|++-+..+. .-|+. |-..+..+ .-+.|
T Consensus 216 ~~N~~ni~C~~Ctdv~---~~vlvf~Cns~HvtC~dCFr~yc~~Rl~~rqf~~~p~~gyslpc~agc~~s~i~e~HHF~i 292 (446)
T KOG0006|consen 216 ATNSRNITCITCTDVR---SPVLVFQCNSRHVTCLDCFRLYCVTRLNDRQFVHDPQLGYSLPCVAGCPNSLIKELHHFRI 292 (446)
T ss_pred hcccccceeEEecCCc---cceEEEecCCceeehHHhhhhHhhhcccccccccCccccccccccCCCchHHHHhhhhhee
Confidence 4445677899999988 5555 5787 999999999765431 24664 54332211 00111
Q ss_pred hh---hHHHHH----HHhc-ceeeecccCCCCCceeecccCCCccCCCCCCCCcCccCC-ccchhhcHHHHHH-HHhcCC
Q 000610 72 VE---SNKALA----ETIG-KITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCN-RCAIQIVHRQVQE-HAQNCP 141 (1392)
Q Consensus 72 L~---~NkaLe----KEI~-qL~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp-~CgeqI~ReeLqe-HLq~CP 141 (1392)
+- .|+.-+ +.+. .--|.|++. ||......+- .| +.+.|+ .|+..++|++++. |..+|.
T Consensus 293 lg~e~Y~rYQr~atEe~vlq~gGVlCP~p--gCG~gll~EP------D~----rkvtC~~gCgf~FCR~C~e~yh~geC~ 360 (446)
T KOG0006|consen 293 LGEEQYNRYQRYATEECVLQMGGVLCPRP--GCGAGLLPEP------DQ----RKVTCEGGCGFAFCRECKEAYHEGECS 360 (446)
T ss_pred cchhHHHHHHHhhhhhheeecCCEecCCC--CCCcccccCC------CC----CcccCCCCchhHhHHHHHhhhccccce
Confidence 11 111111 1111 125788874 7766443322 22 467886 4999999999984 766775
No 109
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=78.15 E-value=1.2 Score=56.40 Aligned_cols=47 Identities=23% Similarity=0.486 Sum_probs=36.6
Q ss_pred CcccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCC-CCccc
Q 000610 16 GEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPY-DGYLV 63 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPv-CRkpI 63 (1392)
-.+.|.||..-++ .....| .|+|..-.+|..+|+++...||. |++.+
T Consensus 1027 ~~~~C~~C~l~V~-gss~~Cg~C~Hv~H~sc~~eWf~~gd~CpsGCGC~C 1075 (1081)
T KOG0309|consen 1027 FTFQCAICHLAVR-GSSNFCGTCGHVGHTSCMMEWFRTGDVCPSGCGCHC 1075 (1081)
T ss_pred ceeeeeeEeeEee-ccchhhccccccccHHHHHHHHhcCCcCCCCCCcCc
Confidence 3456888887663 344556 99999999999999999999996 66543
No 110
>KOG3993 consensus Transcription factor (contains Zn finger) [Transcription]
Probab=76.72 E-value=0.58 Score=56.14 Aligned_cols=43 Identities=21% Similarity=0.617 Sum_probs=30.5
Q ss_pred ccCCCCcccccCCcccccCCCCEEc---CCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 11 IQSLAGEYFCPVCRLLVYPNEALQS---QCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 11 VE~LeEeLiCPICleVf~PkDPVQT---sCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
+.+...+|+|-+|++.+ .|++.+ .|-.+. .-..+||.|.+.|.
T Consensus 261 i~n~iGdyiCqLCK~kY--eD~F~LAQHrC~RIV---------~vEYrCPEC~KVFs 306 (500)
T KOG3993|consen 261 IPNVIGDYICQLCKEKY--EDAFALAQHRCPRIV---------HVEYRCPECDKVFS 306 (500)
T ss_pred CcccHHHHHHHHHHHhh--hhHHHHhhccCCeeE---------EeeecCCccccccc
Confidence 44556689999999999 888875 555432 12358999988764
No 111
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=76.58 E-value=2.8 Score=47.19 Aligned_cols=52 Identities=17% Similarity=0.318 Sum_probs=41.2
Q ss_pred CCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhh--------CCCCCCCCcccc
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT--------TQACPYDGYLVT 64 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkS--------s~sCPvCRkpIt 64 (1392)
+-+.+--|.+|...+...|.+.+.|-|+|--.|+.+|... ...||.|...|.
T Consensus 46 DsDY~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiF 105 (299)
T KOG3970|consen 46 DSDYNPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIF 105 (299)
T ss_pred hcCCCCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccC
Confidence 3444556999998885567788899999999999999874 248999987654
No 112
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=75.18 E-value=1.7 Score=52.42 Aligned_cols=44 Identities=18% Similarity=0.433 Sum_probs=28.0
Q ss_pred CcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccc
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpI 63 (1392)
+-|+|..|..-|. -..+-..-+..||..|+...+. +|-+|.+.|
T Consensus 301 ~CFtC~~C~r~L~-Gq~FY~v~~k~~CE~cyq~tle---kC~~Cg~~I 344 (468)
T KOG1701|consen 301 QCFTCRTCRRQLA-GQSFYQVDGKPYCEGCYQDTLE---KCNKCGEPI 344 (468)
T ss_pred cceehHhhhhhhc-cccccccCCcccchHHHHHHHH---HHhhhhhHH
Confidence 3456777765552 2333345567789999888765 777777654
No 113
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=72.74 E-value=2 Score=38.23 Aligned_cols=44 Identities=25% Similarity=0.572 Sum_probs=26.0
Q ss_pred cccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccc
Q 000610 19 FCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTE 65 (1392)
Q Consensus 19 iCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~ 65 (1392)
.|.-|-..- ...+.+-.|..|..|+...+..+..|++|.+++..
T Consensus 4 nCKsCWf~~---k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWFAN---KGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S-----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhhcC---CCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 355454333 44444556999999999999999999999987653
No 114
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=72.33 E-value=3.6 Score=35.28 Aligned_cols=38 Identities=18% Similarity=0.552 Sum_probs=24.7
Q ss_pred ccCCcccccCCCCEEcC---CCCcccHhhHHHHHhhCC--CCCCC
Q 000610 20 CPVCRLLVYPNEALQSQ---CTHLYCKPCLTYIVNTTQ--ACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDPVQTs---CGHtFCksCIeewLkSs~--sCPvC 59 (1392)
|.+|.+|+ ..-+.+. |.-.+=..|+..+++... .||.|
T Consensus 1 C~~C~~iv--~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIV--TQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB---SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhH--eeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 78999999 6778874 998898999999998643 79988
No 115
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=72.06 E-value=1.9 Score=37.86 Aligned_cols=42 Identities=24% Similarity=0.505 Sum_probs=23.4
Q ss_pred cccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhh---C--CCCCCCCc
Q 000610 17 EYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNT---T--QACPYDGY 61 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkS---s--~sCPvCRk 61 (1392)
.|.|+|....+ +.|+. ..|.|.-|.+ ++.++.. . -.||+|.+
T Consensus 2 sL~CPls~~~i--~~P~Rg~~C~H~~CFD-l~~fl~~~~~~~~W~CPiC~~ 49 (50)
T PF02891_consen 2 SLRCPLSFQRI--RIPVRGKNCKHLQCFD-LESFLESNQRTPKWKCPICNK 49 (50)
T ss_dssp ESB-TTTSSB---SSEEEETT--SS--EE-HHHHHHHHHHS---B-TTT--
T ss_pred eeeCCCCCCEE--EeCccCCcCcccceEC-HHHHHHHhhccCCeECcCCcC
Confidence 37899999999 78888 5999998853 4444442 2 37999975
No 116
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=71.90 E-value=4.2 Score=47.08 Aligned_cols=62 Identities=18% Similarity=0.463 Sum_probs=43.1
Q ss_pred cccccCCcccccC--CCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcc
Q 000610 17 EYFCPVCRLLVYP--NEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGK 84 (1392)
Q Consensus 17 eLiCPICleVf~P--kDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~q 84 (1392)
++.|+||.+.++. ..+....|||..=.+|+++.+.++..||+|.+ +... ....+.++++|..
T Consensus 158 ~~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~-~~d~-----~~~~~~~d~~l~~ 221 (276)
T KOG1940|consen 158 EFNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK-PGDM-----SHYFRKLDKELAG 221 (276)
T ss_pred cCCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc-hHHH-----HHHHHHHHHHHhc
Confidence 3449999976632 23344699999999999999988899999988 4321 2234445555554
No 117
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=71.33 E-value=2.1 Score=55.18 Aligned_cols=40 Identities=23% Similarity=0.446 Sum_probs=34.0
Q ss_pred ccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhCCCCCCCCcc
Q 000610 18 YFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTTQACPYDGYL 62 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs~sCPvCRkp 62 (1392)
-.|.+|...+ +-|++ -.|||.|-..|++ .+...||.|+..
T Consensus 841 skCs~C~~~L--dlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e 881 (933)
T KOG2114|consen 841 SKCSACEGTL--DLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPE 881 (933)
T ss_pred eeecccCCcc--ccceeeeecccHHHHHhhc---cCcccCCccchh
Confidence 4799999999 67777 5999999999999 445699999863
No 118
>PRK04023 DNA polymerase II large subunit; Validated
Probab=70.79 E-value=2.7 Score=55.18 Aligned_cols=66 Identities=15% Similarity=0.270 Sum_probs=40.6
Q ss_pred CcccccCCcccccCCCCEEc-CCCC-----cccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcceee
Q 000610 16 GEYFCPVCRLLVYPNEALQS-QCTH-----LYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKITV 87 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQT-sCGH-----tFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~V 87 (1392)
....|+-|.... ....| .||. .||..|-.. .....||.|...+....... +.....+.+.++++.+
T Consensus 625 g~RfCpsCG~~t---~~frCP~CG~~Te~i~fCP~CG~~--~~~y~CPKCG~El~~~s~~~-i~l~~~~~~A~~~lg~ 696 (1121)
T PRK04023 625 GRRKCPSCGKET---FYRRCPFCGTHTEPVYRCPRCGIE--VEEDECEKCGREPTPYSKRK-IDLKELYDRALENLGE 696 (1121)
T ss_pred cCccCCCCCCcC---CcccCCCCCCCCCcceeCccccCc--CCCCcCCCCCCCCCccceEE-ecHHHHHHHHHHHhCC
Confidence 346799999876 33567 6985 599999433 23357999988665443322 3334445554444433
No 119
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=70.46 E-value=2.5 Score=54.53 Aligned_cols=48 Identities=17% Similarity=0.445 Sum_probs=38.5
Q ss_pred CCcccccCCcccccCCCCEE-c-CCCCcccHhhHHHHHhhC-------CCCCCCCcc
Q 000610 15 AGEYFCPVCRLLVYPNEALQ-S-QCTHLYCKPCLTYIVNTT-------QACPYDGYL 62 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ-T-sCGHtFCksCIeewLkSs-------~sCPvCRkp 62 (1392)
.+.|.|.||.+.+.+..++- | .|.|+|=..||.+|.++. -.||.|...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv 245 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSV 245 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccch
Confidence 46789999999885555544 3 899999999999999852 289999843
No 120
>smart00734 ZnF_Rad18 Rad18-like CCHC zinc finger. Yeast Rad18p functions with Rad5p in error-free post-replicative DNA repair. This zinc finger is likely to bind nucleic-acids.
Probab=70.14 E-value=3 Score=32.48 Aligned_cols=22 Identities=23% Similarity=0.629 Sum_probs=20.4
Q ss_pred ccCCccchhhcHHHHHHHHhcC
Q 000610 119 VVCNRCAIQIVHRQVQEHAQNC 140 (1392)
Q Consensus 119 V~Cp~CgeqI~ReeLqeHLq~C 140 (1392)
+.|+.|.+.+....+.+|++.|
T Consensus 2 v~CPiC~~~v~~~~in~HLD~C 23 (26)
T smart00734 2 VQCPVCFREVPENLINSHLDSC 23 (26)
T ss_pred CcCCCCcCcccHHHHHHHHHHh
Confidence 6799999999999999999988
No 121
>KOG1701 consensus Focal adhesion adaptor protein Paxillin and related LIM proteins [Signal transduction mechanisms]
Probab=69.07 E-value=2.1 Score=51.63 Aligned_cols=47 Identities=17% Similarity=0.350 Sum_probs=23.5
Q ss_pred cccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCCCCcccccc
Q 000610 17 EYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYDGYLVTEA 66 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPvCRkpIt~s 66 (1392)
-|+|-+|..-|. ..++.. .=..+||-.|+.+.+. .+|-+|.++|...
T Consensus 360 CF~Cv~C~r~ld-gipFtvd~~n~v~Cv~dfh~kfA--PrCs~C~~PI~P~ 407 (468)
T KOG1701|consen 360 CFTCVVCARCLD-GIPFTVDSQNNVYCVPDFHKKFA--PRCSVCGNPILPR 407 (468)
T ss_pred ceEEEEeccccC-CccccccCCCceeeehhhhhhcC--cchhhccCCccCC
Confidence 345555555552 223332 4445555555555433 4666666655443
No 122
>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type
Probab=68.69 E-value=3.5 Score=31.67 Aligned_cols=23 Identities=22% Similarity=0.557 Sum_probs=21.3
Q ss_pred CccCCccchhhcHHHHHHHHhcC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNC 140 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~C 140 (1392)
.+.|+.|+..+..+.|..|+..|
T Consensus 2 l~~C~~CgR~F~~~~l~~H~~~C 24 (25)
T PF13913_consen 2 LVPCPICGRKFNPDRLEKHEKIC 24 (25)
T ss_pred CCcCCCCCCEECHHHHHHHHHhc
Confidence 57899999999999999999888
No 123
>KOG2462 consensus C2H2-type Zn-finger protein [Transcription]
Probab=68.07 E-value=5 Score=46.39 Aligned_cols=53 Identities=13% Similarity=0.180 Sum_probs=36.7
Q ss_pred CCCccCCCCCCCCcCccCCccchhhc-HHHHHHHHhc-CCCCCCCCCCCCCccccc
Q 000610 104 ECTSHCSGCAFGNSPVVCNRCAIQIV-HRQVQEHAQN-CPGVQPQASQPEGVHDAA 157 (1392)
Q Consensus 104 ELesH~esCey~~r~V~Cp~CgeqI~-ReeLqeHLq~-CPk~pVkCPqcdgt~saa 157 (1392)
-|..|.++-.= +.++.|..|++-+. |.+|..|+++ -.....+|..|.-++...
T Consensus 202 LLQGHiRTHTG-EKPF~C~hC~kAFADRSNLRAHmQTHS~~K~~qC~~C~KsFsl~ 256 (279)
T KOG2462|consen 202 LLQGHIRTHTG-EKPFSCPHCGKAFADRSNLRAHMQTHSDVKKHQCPRCGKSFALK 256 (279)
T ss_pred HhhcccccccC-CCCccCCcccchhcchHHHHHHHHhhcCCccccCcchhhHHHHH
Confidence 34556655433 35789999998754 8899999885 445577999887554433
No 124
>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length. The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.
Probab=67.81 E-value=1.2 Score=33.89 Aligned_cols=25 Identities=20% Similarity=0.589 Sum_probs=23.6
Q ss_pred ceeEeecccccccCccccchhHHHH
Q 000610 1323 WCRICKVDCETVDGLDLHSQTREHQ 1347 (1392)
Q Consensus 1323 wcric~~~c~tve~l~~h~~trehq 1347 (1392)
+|-+|.+.+.+.+.|+.|..|+-|.
T Consensus 3 ~C~~C~k~f~~~~~~~~H~~sk~Hk 27 (27)
T PF12171_consen 3 YCDACDKYFSSENQLKQHMKSKKHK 27 (27)
T ss_dssp BBTTTTBBBSSHHHHHCCTTSHHHH
T ss_pred CcccCCCCcCCHHHHHHHHccCCCC
Confidence 6999999999999999999999884
No 125
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=67.63 E-value=2.6 Score=51.80 Aligned_cols=51 Identities=24% Similarity=0.536 Sum_probs=30.3
Q ss_pred CCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhC------------CCCCCCCccccc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT------------QACPYDGYLVTE 65 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs------------~sCPvCRkpIt~ 65 (1392)
|++.|.|..|..+-.+ ..+.-.=...||..||.+.-... ..||.|...+..
T Consensus 2 l~~L~fC~~C~~irc~-~c~~~Ei~~~yCp~CL~~~p~~e~~~~~nrC~r~Cf~CP~C~~~L~~ 64 (483)
T PF05502_consen 2 LEELYFCEHCHKIRCP-RCVSEEIDSYYCPNCLFEVPSSEARSEKNRCSRNCFDCPICFSPLSV 64 (483)
T ss_pred cccceecccccccCCh-hhcccccceeECccccccCChhhheeccceeccccccCCCCCCccee
Confidence 5667788888887621 11111223568888887654321 268888776543
No 126
>KOG2169 consensus Zn-finger transcription factor [Transcription]
Probab=67.57 E-value=6.6 Score=49.93 Aligned_cols=54 Identities=22% Similarity=0.408 Sum_probs=37.3
Q ss_pred CCCCcccccCCcccccCCCCEE-cCCCCcccHhhHHHHHhhC----CCCCCCCccccccCC
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVNTT----QACPYDGYLVTEADS 68 (1392)
Q Consensus 13 ~LeEeLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLkSs----~sCPvCRkpIt~sdl 68 (1392)
.+.-.|.|+||+.-+ .-|.. ..|.|+=|.+=+..+-... -.||+|.+.+..+++
T Consensus 302 ~~~vSL~CPl~~~Rm--~~P~r~~~CkHlQcFD~~~~lq~n~~~pTW~CPVC~~~~~~e~l 360 (636)
T KOG2169|consen 302 SLRVSLNCPLSKMRM--SLPARGHTCKHLQCFDALSYLQMNEQKPTWRCPVCQKAAPFEGL 360 (636)
T ss_pred cceeEecCCccccee--ecCCcccccccceecchhhhHHhccCCCeeeCccCCccccccch
Confidence 456678999999877 45555 3788877776554443322 389999998776653
No 127
>COG3813 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=65.28 E-value=6.7 Score=37.69 Aligned_cols=49 Identities=20% Similarity=0.453 Sum_probs=34.8
Q ss_pred ccCCcccccC--CCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcc
Q 000610 20 CPVCRLLVYP--NEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKP 70 (1392)
Q Consensus 20 CPICleVf~P--kDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~p 70 (1392)
|--|-.-+-+ .++++|.-.++||..|.+..+. ..||.|...+....+++
T Consensus 8 CECCDrDLpp~s~dA~ICtfEcTFCadCae~~l~--g~CPnCGGelv~RP~RP 58 (84)
T COG3813 8 CECCDRDLPPDSTDARICTFECTFCADCAENRLH--GLCPNCGGELVARPIRP 58 (84)
T ss_pred CcccCCCCCCCCCceeEEEEeeehhHhHHHHhhc--CcCCCCCchhhcCcCCh
Confidence 5556644422 5677788889999999987653 69999998776554433
No 128
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=64.55 E-value=2.8 Score=39.97 Aligned_cols=33 Identities=21% Similarity=0.475 Sum_probs=25.4
Q ss_pred CCCcccccCCcccccCCCCEE-cCCCCcccHhhHH
Q 000610 14 LAGEYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLT 47 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQ-TsCGHtFCksCIe 47 (1392)
++++-.|.||...+. ...+. ..|||.|...|+.
T Consensus 75 i~~~~~C~vC~k~l~-~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 75 ITESTKCSVCGKPLG-NSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred ECCCCCccCcCCcCC-CceEEEeCCCeEEeccccc
Confidence 566778999998883 33333 4999999999985
No 129
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=64.19 E-value=4.6 Score=51.83 Aligned_cols=45 Identities=16% Similarity=0.166 Sum_probs=29.4
Q ss_pred CcccccCCcccccCCCCE----Ec---CCCCcccHhhHHHHHhh------CCCCCCCCcc
Q 000610 16 GEYFCPVCRLLVYPNEAL----QS---QCTHLYCKPCLTYIVNT------TQACPYDGYL 62 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPV----QT---sCGHtFCksCIeewLkS------s~sCPvCRkp 62 (1392)
+...|.||...+ .+++ .| .|+|.||..||..|... ...|+.|..-
T Consensus 95 ~s~Ss~~C~~E~--S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~C 152 (1134)
T KOG0825|consen 95 ESDTSPVCEKEH--SPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEEC 152 (1134)
T ss_pred cccccchhheec--CCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHH
Confidence 445577776555 2311 13 69999999999999864 2356777543
No 130
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=63.79 E-value=2.3e+02 Score=33.01 Aligned_cols=47 Identities=28% Similarity=0.297 Sum_probs=27.2
Q ss_pred cCCCCCCCCCCCCCCCCCCCCccCCCCcccCCCCCCCCCCCCCCCCCCcccccc
Q 000610 923 LGHPHPSPVGGPPQRSVPLSGFDSHVGTMVGPAYGPGGPMDLKQPSNPMEAEMF 976 (1392)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~f 976 (1392)
++||.|..+.++ +.-+++.|+-.+|+ -|. |+ .+-|.-+ +-|+|.+.|
T Consensus 191 i~~g~p~~~p~p--g~p~~s~~~~~~~~-~r~--~~-p~~~vp~-~pp~~~~~~ 237 (341)
T KOG2893|consen 191 IGHGPPGGPPMP--GPPQRSRFDQPDGG-DRW--GP-PMRGVPR-TPPYENEHE 237 (341)
T ss_pred CCCCCCCCCCCC--CCCccccccCCCCC-CCC--CC-CcCCCCC-CCCcCCccc
Confidence 789988766555 34467888888877 333 21 2222222 555665555
No 131
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=62.81 E-value=1 Score=49.97 Aligned_cols=14 Identities=21% Similarity=0.463 Sum_probs=9.5
Q ss_pred CCCcccccCCcccc
Q 000610 14 LAGEYFCPVCRLLV 27 (1392)
Q Consensus 14 LeEeLiCPICleVf 27 (1392)
-.+.|.|-||..-|
T Consensus 114 d~d~ftCrvCgK~F 127 (267)
T KOG3576|consen 114 DQDSFTCRVCGKKF 127 (267)
T ss_pred CCCeeeeehhhhhh
Confidence 35567777777766
No 132
>PLN02189 cellulose synthase
Probab=61.53 E-value=4.9 Score=53.29 Aligned_cols=46 Identities=24% Similarity=0.545 Sum_probs=34.0
Q ss_pred cccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 19 FCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+|.||.+-+-. -+++. | .|+--.|+.|++.-.++ +..||.|++...
T Consensus 36 ~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 36 VCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 89999987510 12443 5 79999999999776665 469999998754
No 133
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.39 E-value=6 Score=43.42 Aligned_cols=30 Identities=27% Similarity=0.544 Sum_probs=24.9
Q ss_pred CCCCcccHhhHHHHHhh---C--------CCCCCCCccccc
Q 000610 36 QCTHLYCKPCLTYIVNT---T--------QACPYDGYLVTE 65 (1392)
Q Consensus 36 sCGHtFCksCIeewLkS---s--------~sCPvCRkpIt~ 65 (1392)
.|+..|-.-||.+|++. + ..||.|..++..
T Consensus 189 qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 189 QCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred ccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 88989999999999984 1 289999988764
No 134
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=61.25 E-value=7.3 Score=44.74 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=40.8
Q ss_pred CCcccccCCcccccCCCCEE----cCCCCcccHhhHHHHHhhCCCCCCCCccccccCCc
Q 000610 15 AGEYFCPVCRLLVYPNEALQ----SQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSK 69 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ----TsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~ 69 (1392)
...|+|+|-...| ..-.. -+|||+|-.+-+.++- ...|++|...+...++.
T Consensus 109 ~a~fiCPvtgleM--ng~~~F~~l~~CGcV~SerAlKeik--as~C~~C~a~y~~~dvI 163 (293)
T KOG3113|consen 109 RARFICPVTGLEM--NGKYRFCALRCCGCVFSERALKEIK--ASVCHVCGAAYQEDDVI 163 (293)
T ss_pred cceeeccccccee--cceEEEEEEeccceeccHHHHHHhh--hccccccCCcccccCeE
Confidence 3468999999988 55544 2999999998888774 47999999988877754
No 135
>PLN02195 cellulose synthase A
Probab=61.23 E-value=6.4 Score=51.97 Aligned_cols=46 Identities=28% Similarity=0.556 Sum_probs=27.7
Q ss_pred cccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 19 FCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+|-||.+.+-. -++.. | .|+--.|+.|++.-.+. +..||.|+....
T Consensus 8 ~c~~cgd~~~~~~~g~~fvaC~eC~~pvCrpCyeyer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 8 ICATCGEEVGVDSNGEAFVACHECSYPLCKACLEYEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred cceecccccCcCCCCCeEEEeccCCCccccchhhhhhhcCCccCCccCCccc
Confidence 57777764310 12333 4 77777788887655443 357777777665
No 136
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=59.29 E-value=14 Score=34.03 Aligned_cols=44 Identities=23% Similarity=0.502 Sum_probs=33.7
Q ss_pred cccCCcccccCC--CCEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 19 FCPVCRLLVYPN--EALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~Pk--DPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
.|-.|..-|.++ ++++++=..+||..|.+..+ ...||.|+..+.
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv 52 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELV 52 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCccc
Confidence 477787666333 46777777899999999987 379999987654
No 137
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=58.61 E-value=5.9 Score=52.69 Aligned_cols=46 Identities=26% Similarity=0.568 Sum_probs=33.5
Q ss_pred cccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 19 FCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+|-||.+-+-. -+++. | .|+--.|+.|++.-.+. +..||.|+....
T Consensus 19 iCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 19 VCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred eeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 89999976411 12333 5 89999999999776654 469999997653
No 138
>KOG2199 consensus Signal transducing adaptor protein STAM/STAM2 [Signal transduction mechanisms]
Probab=58.44 E-value=22 Score=43.19 Aligned_cols=10 Identities=20% Similarity=0.328 Sum_probs=5.0
Q ss_pred ccccCCcccc
Q 000610 18 YFCPVCRLLV 27 (1392)
Q Consensus 18 LiCPICleVf 27 (1392)
++--||-.|-
T Consensus 28 ~IlDvCD~v~ 37 (462)
T KOG2199|consen 28 LILDVCDKVG 37 (462)
T ss_pred HHHHHHHhhc
Confidence 3445555544
No 139
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=58.44 E-value=6.4 Score=47.08 Aligned_cols=32 Identities=19% Similarity=0.435 Sum_probs=22.8
Q ss_pred CCCCcccHhhHHHHHhhC-------------CCCCCCCccccccC
Q 000610 36 QCTHLYCKPCLTYIVNTT-------------QACPYDGYLVTEAD 67 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs-------------~sCPvCRkpIt~sd 67 (1392)
-|.=+.|.+|+-+|+.+. ..||+||+.+..-|
T Consensus 310 ~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilD 354 (358)
T PF10272_consen 310 YCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILD 354 (358)
T ss_pred cccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeee
Confidence 344445779999999752 37999999875443
No 140
>PLN02436 cellulose synthase A
Probab=58.24 E-value=5.5 Score=52.92 Aligned_cols=46 Identities=26% Similarity=0.575 Sum_probs=33.7
Q ss_pred cccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 19 FCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+|.||.+-+-. -+++. | .|+--.|+.|++.-.++ +..||.|+....
T Consensus 38 iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 38 TCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred cccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 89999976410 22333 5 79999999999776665 469999998654
No 141
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=52.83 E-value=6.7 Score=44.06 Aligned_cols=43 Identities=26% Similarity=0.624 Sum_probs=36.2
Q ss_pred ccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCCCCcc
Q 000610 18 YFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYDGYL 62 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPvCRkp 62 (1392)
..|-+|.+++ ..-+.| +|+=.|-.+|+.+++.+...||-|..-
T Consensus 182 k~Cn~Ch~Lv--Iqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d~ 225 (235)
T KOG4718|consen 182 KNCNLCHCLV--IQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGDL 225 (235)
T ss_pred HHHhHhHHHh--heeeccCcccchhhhHHHHHHhcccCcCCchhcc
Confidence 4699999988 555667 888888899999999988899999643
No 142
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=51.72 E-value=5.2 Score=50.59 Aligned_cols=50 Identities=20% Similarity=0.404 Sum_probs=31.7
Q ss_pred cCCCCcccccCCccccc--CCCCEEc-CCCCcccHhhHHHHHhhC-----CCCCCCCc
Q 000610 12 QSLAGEYFCPVCRLLVY--PNEALQS-QCTHLYCKPCLTYIVNTT-----QACPYDGY 61 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~--PkDPVQT-sCGHtFCksCIeewLkSs-----~sCPvCRk 61 (1392)
+.+...++|.||...=. ..-.+.| .|+-.|=..|+..|+... -.||-||.
T Consensus 13 ~~~~~~~mc~l~~s~G~~~ag~m~ac~~c~~~yH~~cvt~~~~~~~l~~gWrC~~crv 70 (694)
T KOG4443|consen 13 KAIIVCLMCPLCGSSGKGRAGRLLACSDCGQKYHPYCVTSWAQHAVLSGGWRCPSCRV 70 (694)
T ss_pred hhhhhhhhhhhhccccccccCcchhhhhhcccCCcchhhHHHhHHHhcCCcccCCcee
Confidence 33455688999985431 0112334 888888888888887642 36888864
No 143
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=51.70 E-value=15 Score=35.82 Aligned_cols=49 Identities=24% Similarity=0.519 Sum_probs=21.0
Q ss_pred ccccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccccc
Q 000610 18 YFCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVTEA 66 (1392)
Q Consensus 18 LiCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt~s 66 (1392)
-+|-||.+-+-. -+++. | .|+-..|+.|++.-++. +..||.|+......
T Consensus 10 qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 10 QICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp -B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B----
T ss_pred cccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCcccc
Confidence 579999965410 23344 3 89999999999987775 46999999776543
No 144
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=51.50 E-value=11 Score=44.55 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=38.3
Q ss_pred CCCcccccCCccccc-CCCCEEcCCCCcccHhhHHHHHhhC---CCCCCCCcc
Q 000610 14 LAGEYFCPVCRLLVY-PNEALQSQCTHLYCKPCLTYIVNTT---QACPYDGYL 62 (1392)
Q Consensus 14 LeEeLiCPICleVf~-PkDPVQTsCGHtFCksCIeewLkSs---~sCPvCRkp 62 (1392)
....|+|||-++..+ ...|+...|||+.-+.-+..+.+++ ..||.|-..
T Consensus 333 fHs~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYCP~~ 385 (396)
T COG5109 333 FHSLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYCPEM 385 (396)
T ss_pred ccceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCCCcc
Confidence 445789999886553 2457889999999999999887764 589999654
No 145
>PRK14714 DNA polymerase II large subunit; Provisional
Probab=50.96 E-value=7.4 Score=52.50 Aligned_cols=46 Identities=22% Similarity=0.412 Sum_probs=27.1
Q ss_pred cccccCCcccccCCCCEEc-CCCCc-----ccHhhHHHHHhh---CCCCCCCCccccc
Q 000610 17 EYFCPVCRLLVYPNEALQS-QCTHL-----YCKPCLTYIVNT---TQACPYDGYLVTE 65 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQT-sCGHt-----FCksCIeewLkS---s~sCPvCRkpIt~ 65 (1392)
.+.|+-|.... .. ..| .||.. +|..|=.+.... ...||.|...+..
T Consensus 667 ~rkCPkCG~~t--~~-~fCP~CGs~te~vy~CPsCGaev~~des~a~~CP~CGtplv~ 721 (1337)
T PRK14714 667 RRRCPSCGTET--YE-NRCPDCGTHTEPVYVCPDCGAEVPPDESGRVECPRCDVELTP 721 (1337)
T ss_pred EEECCCCCCcc--cc-ccCcccCCcCCCceeCccCCCccCCCccccccCCCCCCcccc
Confidence 36688888655 12 355 57744 477776654322 2378888765443
No 146
>TIGR00373 conserved hypothetical protein TIGR00373. This family of proteins is, so far, restricted to archaeal genomes. The family appears to be distantly related to the N-terminal region of the eukaryotic transcription initiation factor IIE alpha chain.
Probab=50.76 E-value=14 Score=39.29 Aligned_cols=37 Identities=16% Similarity=0.303 Sum_probs=26.5
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCC
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADS 68 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl 68 (1392)
...|.|+.|..-++ +.+.+.....||.|+..+...+.
T Consensus 107 ~~~Y~Cp~c~~r~t-----------------f~eA~~~~F~Cp~Cg~~L~~~dn 143 (158)
T TIGR00373 107 NMFFICPNMCVRFT-----------------FNEAMELNFTCPRCGAMLDYLDN 143 (158)
T ss_pred CCeEECCCCCcEee-----------------HHHHHHcCCcCCCCCCEeeeccC
Confidence 45677888886551 45555567899999998877664
No 147
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=50.72 E-value=4.5 Score=47.37 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=31.7
Q ss_pred cccccCCcccccCCCCEEc----CCC--CcccHhhHHHHHhhCCCCCCCCc
Q 000610 17 EYFCPVCRLLVYPNEALQS----QCT--HLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQT----sCG--HtFCksCIeewLkSs~sCPvCRk 61 (1392)
.-.||||...- .-.++. .=| +.+|..|-.+|--....||.|..
T Consensus 184 ~~~CPvCGs~P--~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 184 RTLCPACGSPP--VASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCcCCCCCChh--hhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 45899999865 333321 233 67899999999877789999985
No 148
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=50.66 E-value=10 Score=49.03 Aligned_cols=54 Identities=20% Similarity=0.397 Sum_probs=38.6
Q ss_pred CCcccccCCcccccCCCCEE--cCCC---CcccHhhHHHHHhh--CCCCCCCCccccccCC
Q 000610 15 AGEYFCPVCRLLVYPNEALQ--SQCT---HLYCKPCLTYIVNT--TQACPYDGYLVTEADS 68 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ--TsCG---HtFCksCIeewLkS--s~sCPvCRkpIt~sdl 68 (1392)
+|+-.|-||..--.+++|.- |.|. ...-.+|+.+|+.- +.+|-.|...+...++
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~I 70 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDI 70 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeee
Confidence 45678999996544577777 4444 22567999999984 4699999987665554
No 149
>PLN02400 cellulose synthase
Probab=50.31 E-value=7.4 Score=51.87 Aligned_cols=46 Identities=26% Similarity=0.581 Sum_probs=33.3
Q ss_pred cccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 19 FCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 19 iCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
+|-||.+-+-. -+++. | .|+--.|+.|++.-.+. +..||.|+....
T Consensus 38 iCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYk 89 (1085)
T PLN02400 38 ICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYR 89 (1085)
T ss_pred eeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCccc
Confidence 89999976411 12333 5 89999999999765554 469999997654
No 150
>PHA02862 5L protein; Provisional
Probab=50.18 E-value=12 Score=40.19 Aligned_cols=48 Identities=15% Similarity=0.337 Sum_probs=33.5
Q ss_pred ccccCCcccccCCCCEE-cCCC---CcccHhhHHHHHhhC--CCCCCCCccccccC
Q 000610 18 YFCPVCRLLVYPNEALQ-SQCT---HLYCKPCLTYIVNTT--QACPYDGYLVTEAD 67 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQ-TsCG---HtFCksCIeewLkSs--~sCPvCRkpIt~sd 67 (1392)
-+|-||.+.- .+.+. |.|. ...=..|+.+|++.+ ..|+.|+..+....
T Consensus 3 diCWIC~~~~--~e~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~ 56 (156)
T PHA02862 3 DICWICNDVC--DERNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKK 56 (156)
T ss_pred CEEEEecCcC--CCCcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEE
Confidence 4699999876 34332 4552 445679999999853 59999998765433
No 151
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=49.81 E-value=16 Score=39.58 Aligned_cols=49 Identities=18% Similarity=0.354 Sum_probs=34.7
Q ss_pred CCCcccccCCcccccCCCCEE--cCCCC---cccHhhHHHHHhhC--CCCCCCCccccc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQ--SQCTH---LYCKPCLTYIVNTT--QACPYDGYLVTE 65 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQ--TsCGH---tFCksCIeewLkSs--~sCPvCRkpIt~ 65 (1392)
...+..|-||.+-- . ... |.|.. ..=..|+++|+..+ ..|+.|+..+..
T Consensus 5 s~~~~~CRIC~~~~--~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEY--D-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCC--C-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 45567899999765 2 223 55554 34679999999864 599999986543
No 152
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.05 E-value=7 Score=43.42 Aligned_cols=38 Identities=26% Similarity=0.516 Sum_probs=27.5
Q ss_pred ccCCcccccCCCCEEcCCCCc-ccHhhHHHHHhhCCCCCCCCccc
Q 000610 20 CPVCRLLVYPNEALQSQCTHL-YCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 20 CPICleVf~PkDPVQTsCGHt-FCksCIeewLkSs~sCPvCRkpI 63 (1392)
|-+|.+-- .-.+...|.|+ +|..|-... ..||+|+...
T Consensus 161 Cr~C~~~~--~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~ 199 (207)
T KOG1100|consen 161 CRKCGERE--ATVLLLPCRHLCLCGICDESL----RICPICRSPK 199 (207)
T ss_pred ceecCcCC--ceEEeecccceEecccccccC----ccCCCCcChh
Confidence 88888755 33333599976 899998752 5799998754
No 153
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=47.84 E-value=11 Score=50.18 Aligned_cols=49 Identities=27% Similarity=0.479 Sum_probs=35.0
Q ss_pred CcccccCCcccccC---CCCEE-c-CCCCcccHhhHHHHHhh-CCCCCCCCcccc
Q 000610 16 GEYFCPVCRLLVYP---NEALQ-S-QCTHLYCKPCLTYIVNT-TQACPYDGYLVT 64 (1392)
Q Consensus 16 EeLiCPICleVf~P---kDPVQ-T-sCGHtFCksCIeewLkS-s~sCPvCRkpIt 64 (1392)
..-+|-||.+-+-. -+++. | .|+--.|+.|++.-.++ +..||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 34679999976410 22333 5 89999999999766664 469999987654
No 154
>PRK06266 transcription initiation factor E subunit alpha; Validated
Probab=47.55 E-value=19 Score=39.26 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=25.8
Q ss_pred CcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCC
Q 000610 16 GEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADS 68 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl 68 (1392)
..|.|+.|..-++ +.+.+.....||.|+..+...+.
T Consensus 116 ~~Y~Cp~C~~ryt-----------------f~eA~~~~F~Cp~Cg~~L~~~dn 151 (178)
T PRK06266 116 MFFFCPNCHIRFT-----------------FDEAMEYGFRCPQCGEMLEEYDN 151 (178)
T ss_pred CEEECCCCCcEEe-----------------HHHHhhcCCcCCCCCCCCeeccc
Confidence 5677888886551 34455567899999998877664
No 155
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=47.18 E-value=2.2 Score=40.43 Aligned_cols=41 Identities=24% Similarity=0.463 Sum_probs=23.1
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
++.||+|...|. .. . ++.+|..|-..+ .....||.|...+.
T Consensus 1 e~~CP~C~~~L~---~~--~-~~~~C~~C~~~~-~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 1 ENTCPKCQQELE---WQ--G-GHYHCEACQKDY-KKEAFCPDCGQPLE 41 (70)
T ss_dssp --B-SSS-SBEE---EE--T-TEEEETTT--EE-EEEEE-TTT-SB-E
T ss_pred CCcCCCCCCccE---Ee--C-CEEECccccccc-eecccCCCcccHHH
Confidence 478999999882 11 1 899999998754 23458999998764
No 156
>PF08209 Sgf11: Sgf11 (transcriptional regulation protein); InterPro: IPR013246 The Sgf11 family is a SAGA complex subunit in Saccharomyces cerevisiae (Baker's yeast). The SAGA complex is a multisubunit protein complex involved in transcriptional regulation. SAGA combines proteins involved in interactions with DNA-bound activators and TATA-binding protein (TBP), as well as enzymes for histone acetylation and deubiquitylation [].; PDB: 3M99_B 2LO2_A 3MHH_C 3MHS_C.
Probab=46.31 E-value=7.5 Score=32.20 Aligned_cols=26 Identities=23% Similarity=0.549 Sum_probs=22.5
Q ss_pred CccCCccchhhcHHHHHHHHhcCCCC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
.+.|+.|+..|....+..||+.|...
T Consensus 4 ~~~C~nC~R~v~a~RfA~HLekCmg~ 29 (33)
T PF08209_consen 4 YVECPNCGRPVAASRFAPHLEKCMGR 29 (33)
T ss_dssp EEE-TTTSSEEEGGGHHHHHHHHTCH
T ss_pred eEECCCCcCCcchhhhHHHHHHHHcc
Confidence 57899999999999999999999753
No 157
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=45.42 E-value=17 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.793 Sum_probs=11.0
Q ss_pred CCCCcccHhhHHHHHhhCCCCCCC
Q 000610 36 QCTHLYCKPCLTYIVNTTQACPYD 59 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs~sCPvC 59 (1392)
.|.+.||.+|=.-.-.+--.||-|
T Consensus 350 ~Ck~~FCldCDv~iHesLh~CpgC 373 (378)
T KOG2807|consen 350 SCKNVFCLDCDVFIHESLHNCPGC 373 (378)
T ss_pred hccceeeccchHHHHhhhhcCCCc
Confidence 455555555543333333345544
No 158
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=45.31 E-value=3.2 Score=47.45 Aligned_cols=45 Identities=27% Similarity=0.397 Sum_probs=23.0
Q ss_pred CcccccCCcccccCCCCEEc-C----CCCcccHhhHHHHHhhCCCCCCCCcc
Q 000610 16 GEYFCPVCRLLVYPNEALQS-Q----CTHLYCKPCLTYIVNTTQACPYDGYL 62 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQT-s----CGHtFCksCIeewLkSs~sCPvCRkp 62 (1392)
..-.||||...- .-.+.. . --+.+|..|-.+|.-....||.|...
T Consensus 171 ~~g~CPvCGs~P--~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 171 QRGYCPVCGSPP--VLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp T-SS-TTT---E--EEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred cCCcCCCCCCcC--ceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 346899999865 233332 2 35789999999998777899999864
No 159
>KOG1703 consensus Adaptor protein Enigma and related PDZ-LIM proteins [Signal transduction mechanisms; Cytoskeleton]
Probab=45.26 E-value=24 Score=43.47 Aligned_cols=46 Identities=13% Similarity=0.387 Sum_probs=34.5
Q ss_pred CCcccccCCcccccCCCC-EEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 15 AGEYFCPVCRLLVYPNEA-LQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDP-VQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
.+.+.|..|..++ .+. ....=|.+||..|+..|+. ..|-.|...|.
T Consensus 328 ~~~~~c~~~~~~~--~~~~~~~~~g~~~c~~~~~~~~~--p~C~~C~~~i~ 374 (479)
T KOG1703|consen 328 PEHFSCEVCAIVI--LDGGPRELDGKILCHECFHAPFR--PNCKRCLLPIL 374 (479)
T ss_pred ccceeeccccccc--cCCCccccCCCccHHHHHHHhhC--ccccccCCchH
Confidence 3567899998877 333 2357789999999999976 67888877654
No 160
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.16 E-value=11 Score=43.92 Aligned_cols=32 Identities=28% Similarity=0.580 Sum_probs=22.6
Q ss_pred CCCCcccHhhHHHHHhh-------------CCCCCCCCccccccC
Q 000610 36 QCTHLYCKPCLTYIVNT-------------TQACPYDGYLVTEAD 67 (1392)
Q Consensus 36 sCGHtFCksCIeewLkS-------------s~sCPvCRkpIt~sd 67 (1392)
-|.-+.|.+||..|... +..||+||+.+...|
T Consensus 324 ~crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~d 368 (381)
T KOG3899|consen 324 ICRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRD 368 (381)
T ss_pred ccccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEee
Confidence 34555677999998753 248999998765433
No 161
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=44.91 E-value=11 Score=48.16 Aligned_cols=24 Identities=21% Similarity=0.443 Sum_probs=14.7
Q ss_pred CCCCcccHhhHHHHHh--hCCCCCCC
Q 000610 36 QCTHLYCKPCLTYIVN--TTQACPYD 59 (1392)
Q Consensus 36 sCGHtFCksCIeewLk--Ss~sCPvC 59 (1392)
.|-|.+|..|...... .+..|+.|
T Consensus 96 ~~~~~~C~~C~~~~~~~~~~~~~~~c 121 (669)
T KOG2231|consen 96 ACLHHSCHICDRRFRALYNKKECLHC 121 (669)
T ss_pred HHHhhhcCccccchhhhcccCCCccc
Confidence 6666677777666532 34566666
No 162
>PF06937 EURL: EURL protein; InterPro: IPR009704 This family consists of several animal EURL proteins. EURL is preferentially expressed in chick retinal precursor cells as well as in the anterior epithelial cells of the lens at early stages of development. EURL transcripts are found primarily in the peripheral dorsal retina, i.e., the most undifferentiated part of the dorsal retina. EURL transcripts are also detected in the lens at stage 18 and remain abundant in the proliferating epithelial cells of the lens until at least day 11. The distribution pattern of EURL in the developing retina and lens suggest a role before the events leading to cell determination and differentiation [].
Probab=43.67 E-value=22 Score=41.38 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=13.5
Q ss_pred ccccccccCCCCcccccCCcccc
Q 000610 5 NECILNIQSLAGEYFCPVCRLLV 27 (1392)
Q Consensus 5 ~E~IvfVE~LeEeLiCPICleVf 27 (1392)
.|.|++| +|+++-+|.||+..-
T Consensus 4 eeqFvnI-DLnddniCsVCkl~T 25 (285)
T PF06937_consen 4 EEQFVNI-DLNDDNICSVCKLGT 25 (285)
T ss_pred hhhceee-ccCCCceeeeeeecc
Confidence 3445543 477777777777544
No 163
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=43.31 E-value=8.9 Score=45.08 Aligned_cols=44 Identities=20% Similarity=0.338 Sum_probs=32.8
Q ss_pred CcccccCCcccccCCCCEE-c--CCC--CcccHhhHHHHHhhCCCCCCCCc
Q 000610 16 GEYFCPVCRLLVYPNEALQ-S--QCT--HLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ-T--sCG--HtFCksCIeewLkSs~sCPvCRk 61 (1392)
..-.||||...- .-.++ . .=| +.+|..|-.+|--....||.|..
T Consensus 186 ~~~~CPvCGs~P--~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 186 QRQFCPVCGSMP--VSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred CCCCCCCCCCcc--hhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 467899999865 33333 1 233 67899999999887789999985
No 164
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=42.21 E-value=17 Score=46.80 Aligned_cols=52 Identities=21% Similarity=0.298 Sum_probs=32.8
Q ss_pred CCCcccccCCcc-cccCCCCEE----c---CCCCc--------------------ccHhhHHHHHhh--------CCCCC
Q 000610 14 LAGEYFCPVCRL-LVYPNEALQ----S---QCTHL--------------------YCKPCLTYIVNT--------TQACP 57 (1392)
Q Consensus 14 LeEeLiCPICle-Vf~PkDPVQ----T---sCGHt--------------------FCksCIeewLkS--------s~sCP 57 (1392)
+.|.-+|.-|+. ++.|.+..- + .||-+ .|..|..++..- ...||
T Consensus 98 ~pD~a~C~~Cl~Ei~dp~~rrY~YPF~~CT~CGPRfTIi~alPYDR~nTsM~~F~lC~~C~~EY~dP~nRRfHAQp~aCp 177 (750)
T COG0068 98 PPDAATCEDCLEEIFDPNSRRYLYPFINCTNCGPRFTIIEALPYDRENTSMADFPLCPFCDKEYKDPLNRRFHAQPIACP 177 (750)
T ss_pred CCchhhhHHHHHHhcCCCCcceeccccccCCCCcceeeeccCCCCcccCccccCcCCHHHHHHhcCccccccccccccCc
Confidence 456668999995 443322221 2 55543 699999987652 24899
Q ss_pred CCCccccc
Q 000610 58 YDGYLVTE 65 (1392)
Q Consensus 58 vCRkpIt~ 65 (1392)
.|+-.+..
T Consensus 178 ~CGP~~~l 185 (750)
T COG0068 178 KCGPHLFL 185 (750)
T ss_pred ccCCCeEE
Confidence 99875443
No 165
>PRK14559 putative protein serine/threonine phosphatase; Provisional
Probab=41.67 E-value=8.8 Score=48.98 Aligned_cols=37 Identities=32% Similarity=0.724 Sum_probs=19.2
Q ss_pred ccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 18 YFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
+.|+-|..... . +..||..|=... ....||.|+..+.
T Consensus 2 ~~Cp~Cg~~n~-~-------~akFC~~CG~~l--~~~~Cp~CG~~~~ 38 (645)
T PRK14559 2 LICPQCQFENP-N-------NNRFCQKCGTSL--THKPCPQCGTEVP 38 (645)
T ss_pred CcCCCCCCcCC-C-------CCccccccCCCC--CCCcCCCCCCCCC
Confidence 36888886651 2 344555553222 1245666665543
No 166
>KOG3623 consensus Homeobox transcription factor SIP1 [Transcription]
Probab=41.51 E-value=14 Score=47.46 Aligned_cols=48 Identities=17% Similarity=0.311 Sum_probs=30.0
Q ss_pred eeecccCCCCCceeeccc-CCCccCCCCCCCCcCccCCccchhhcHHH-HHHHHh
Q 000610 86 TVHCLFHRSGCTWQGPLS-ECTSHCSGCAFGNSPVVCNRCAIQIVHRQ-VQEHAQ 138 (1392)
Q Consensus 86 ~VkCpNkk~GCqwsgtLk-ELesH~esCey~~r~V~Cp~CgeqI~Ree-LqeHLq 138 (1392)
+++|. -|.+-++++ .|+.|++.-.- +.+..|+.|++.+...- ...|+.
T Consensus 281 KFKCt----ECgKAFKfKHHLKEHlRIHSG-EKPfeCpnCkKRFSHSGSySSHmS 330 (1007)
T KOG3623|consen 281 KFKCT----ECGKAFKFKHHLKEHLRIHSG-EKPFECPNCKKRFSHSGSYSSHMS 330 (1007)
T ss_pred ccccc----ccchhhhhHHHHHhhheeecC-CCCcCCcccccccccCCccccccc
Confidence 45554 366666555 35566654433 35789999999887664 456754
No 167
>KOG2789 consensus Putative Zn-finger protein [General function prediction only]
Probab=41.06 E-value=10 Score=45.86 Aligned_cols=32 Identities=25% Similarity=0.613 Sum_probs=24.7
Q ss_pred CcccccCCcccccCCCCEE--cCCCCcccHhhHHHH
Q 000610 16 GEYFCPVCRLLVYPNEALQ--SQCTHLYCKPCLTYI 49 (1392)
Q Consensus 16 EeLiCPICleVf~PkDPVQ--TsCGHtFCksCIeew 49 (1392)
....|+||+... -..+. -+|....|..|+...
T Consensus 73 r~~ecpicflyy--ps~~n~~rcC~~~Ic~ecf~~~ 106 (482)
T KOG2789|consen 73 RKTECPICFLYY--PSAKNLVRCCSETICGECFAPF 106 (482)
T ss_pred ccccCceeeeec--ccccchhhhhccchhhhheecc
Confidence 456799999876 34344 399999999999876
No 168
>KOG4761 consensus Proteasome formation inhibitor PI31 [Posttranslational modification, protein turnover, chaperones]
Probab=40.98 E-value=1e+02 Score=35.68 Aligned_cols=46 Identities=26% Similarity=0.386 Sum_probs=31.9
Q ss_pred CCCCcCCCCCCCCCCCCCCcccccCCCCCCCCCCCCCCCCCcccccccCCCCCC
Q 000610 1108 PGLKLDPMGASAPSRFLPAYHDDAAGRSDSSHAHPDFPRPGRAYGRRHMGGLSP 1161 (1392)
Q Consensus 1108 ~g~~~~~~~g~~p~~f~~~~~~d~~~~~~s~~~~p~f~~p~~~~~~~~~dg~~~ 1161 (1392)
-||-+|+|. +. +=|.-++..|++| +||+-.-||+.|+--+-.|.++
T Consensus 203 Gg~~~dpl~-~G----p~g~~~~~pg~pn---~~PG~vPpgarFdP~gP~g~~~ 248 (266)
T KOG4761|consen 203 GGMIVDPLR-SG----PRGLIDPSPGLPN---LPPGAVPPGARFDPFGPIGTSP 248 (266)
T ss_pred CCccccccc-cC----CCCCCCCCCCCCC---CCCCCCCCCCcCCCCCCCCCCC
Confidence 377778773 33 2266688888888 8899888888887655544443
No 169
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=40.43 E-value=13 Score=44.71 Aligned_cols=43 Identities=19% Similarity=0.445 Sum_probs=31.8
Q ss_pred cccccCCcccccC---CCCEEcCCCCcccHhhHHHHHhhCCCCCCC
Q 000610 17 EYFCPVCRLLVYP---NEALQSQCTHLYCKPCLTYIVNTTQACPYD 59 (1392)
Q Consensus 17 eLiCPICleVf~P---kDPVQTsCGHtFCksCIeewLkSs~sCPvC 59 (1392)
...|++|+..+.. -.-++|.|+|-||..|...|...+..|..|
T Consensus 306 wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~ 351 (384)
T KOG1812|consen 306 WRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYEC 351 (384)
T ss_pred cCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCc
Confidence 5679999976511 224567899999999999997776666654
No 170
>KOG0957 consensus PHD finger protein [General function prediction only]
Probab=39.98 E-value=15 Score=45.59 Aligned_cols=26 Identities=23% Similarity=0.377 Sum_probs=18.0
Q ss_pred cCccCCccchhhcHHHHHHHHhcCCCCCCCCCCCCC
Q 000610 117 SPVVCNRCAIQIVHRQVQEHAQNCPGVQPQASQPEG 152 (1392)
Q Consensus 117 r~V~Cp~CgeqI~ReeLqeHLq~CPk~pVkCPqcdg 152 (1392)
|.-.|-.|..-|++. ++.|.|-+..|
T Consensus 251 RtGvci~CdaGMCk~----------YfHVTCAQk~G 276 (707)
T KOG0957|consen 251 RTGVCIRCDAGMCKE----------YFHVTCAQKLG 276 (707)
T ss_pred hcceeeeccchhhhh----------hhhhhHHhhhc
Confidence 556788888888876 44566666654
No 171
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=39.57 E-value=20 Score=42.58 Aligned_cols=47 Identities=21% Similarity=0.378 Sum_probs=36.6
Q ss_pred ccccCCcccccCCCC--EEcCCCCcccHhhHHHHHhhCCCCCCCCcccc
Q 000610 18 YFCPVCRLLVYPNEA--LQSQCTHLYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 18 LiCPICleVf~PkDP--VQTsCGHtFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
-.|+||.+.+...+. +-|.|++..|..|+.+.......|+.||+...
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 469999986621222 22799999999999999888899999997654
No 172
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=38.84 E-value=31 Score=30.43 Aligned_cols=33 Identities=12% Similarity=0.233 Sum_probs=18.0
Q ss_pred ccCCccchhhcHHHHHHHHhc--CC-CCCCCCCCCC
Q 000610 119 VVCNRCAIQIVHRQVQEHAQN--CP-GVQPQASQPE 151 (1392)
Q Consensus 119 V~Cp~CgeqI~ReeLqeHLq~--CP-k~pVkCPqcd 151 (1392)
+.|++|++.+....|..|... .. ...+.||-|.
T Consensus 3 f~CP~C~~~~~~~~L~~H~~~~H~~~~~~v~CPiC~ 38 (54)
T PF05605_consen 3 FTCPYCGKGFSESSLVEHCEDEHRSESKNVVCPICS 38 (54)
T ss_pred cCCCCCCCccCHHHHHHHHHhHCcCCCCCccCCCch
Confidence 456666666666666666543 11 1245566554
No 173
>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins. Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.
Probab=38.38 E-value=12 Score=33.00 Aligned_cols=20 Identities=25% Similarity=0.595 Sum_probs=14.8
Q ss_pred CccCCccchhhcHHHHHHHHh
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQ 138 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq 138 (1392)
.+.|+.|...+. .+|..|+.
T Consensus 31 ~v~CPiC~~~~~-~~l~~Hl~ 50 (54)
T PF05605_consen 31 NVVCPICSSRVT-DNLIRHLN 50 (54)
T ss_pred CccCCCchhhhh-hHHHHHHH
Confidence 478888988654 48888875
No 174
>PLN02248 cellulose synthase-like protein
Probab=38.19 E-value=21 Score=48.05 Aligned_cols=11 Identities=36% Similarity=0.601 Sum_probs=4.7
Q ss_pred cccccCCCCCC
Q 000610 1011 NMMRMNGGPGS 1021 (1392)
Q Consensus 1011 n~~~~~g~~~~ 1021 (1392)
|+.+++|-.|.
T Consensus 682 ~~~GlDGlqGP 692 (1135)
T PLN02248 682 NMRALDGLQGP 692 (1135)
T ss_pred eeccccccCCc
Confidence 34444444443
No 175
>COG3058 FdhE Uncharacterized protein involved in formate dehydrogenase formation [Posttranslational modification, protein turnover, chaperones]
Probab=37.60 E-value=28 Score=40.81 Aligned_cols=45 Identities=20% Similarity=0.378 Sum_probs=31.4
Q ss_pred CCcccccCCcccccCCCCEE----cCCC--CcccHhhHHHHHhhCCCCCCCCc
Q 000610 15 AGEYFCPVCRLLVYPNEALQ----SQCT--HLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ----TsCG--HtFCksCIeewLkSs~sCPvCRk 61 (1392)
+..-.||||.... ...++ +.-| ..-|.-|..+|.--..+|-.|..
T Consensus 183 e~~~~CPvCGS~P--vaSmV~~g~~~~GlRYL~CslC~teW~~VR~KC~nC~~ 233 (308)
T COG3058 183 ESRQYCPVCGSMP--VASMVQIGETEQGLRYLHCSLCETEWHYVRVKCSNCEQ 233 (308)
T ss_pred cccccCCCcCCCC--cceeeeecCccccchhhhhhhHHHHHHHHHHHhccccc
Confidence 4455799999865 33333 2334 34599999999877778888865
No 176
>COG5151 SSL1 RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription / DNA replication, recombination, and repair]
Probab=37.16 E-value=42 Score=39.86 Aligned_cols=93 Identities=18% Similarity=0.278 Sum_probs=46.7
Q ss_pred CCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHHHHhcceeeecccCCCCCceeecccCCCccCCCCCCC--
Q 000610 38 THLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG-- 115 (1392)
Q Consensus 38 GHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~esCey~-- 115 (1392)
|-.+|-.|-.+...-...||.|...+. ....|.+-+-.|.-.-++. +..-..+-.-+||..|...
T Consensus 307 gGy~CP~CktkVCsLPi~CP~Csl~Li---------lsthLarSyhhL~PLk~f~----E~p~~~~~ks~~Cf~CQ~~fp 373 (421)
T COG5151 307 GGYECPVCKTKVCSLPISCPICSLQLI---------LSTHLARSYHHLYPLKPFV----EKPEGTNPKSTHCFVCQGPFP 373 (421)
T ss_pred CceeCCcccceeecCCccCcchhHHHH---------HHHHHHHHHHhhccCcccc----cccCCCCCCCccceeccCCCC
Confidence 445666666665554568999965432 2233444333332111111 1111112233566666642
Q ss_pred ------------CcCccCCccchhhcHH-HHHHHHh--cCCCC
Q 000610 116 ------------NSPVVCNRCAIQIVHR-QVQEHAQ--NCPGV 143 (1392)
Q Consensus 116 ------------~r~V~Cp~CgeqI~Re-eLqeHLq--~CPk~ 143 (1392)
..-..|+.|+..++-. ++--|.. .|.++
T Consensus 374 ~~~~~~~~~~~ss~rY~Ce~CK~~FC~dCdvfiHe~Lh~C~gC 416 (421)
T COG5151 374 KPPVSPFDESTSSGRYQCELCKSTFCSDCDVFIHETLHFCIGC 416 (421)
T ss_pred CCCCCcccccccccceechhhhhhhhhhhHHHHHHHHhhCCCC
Confidence 1245788888877754 3445643 67665
No 177
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=36.61 E-value=31 Score=31.62 Aligned_cols=42 Identities=21% Similarity=0.441 Sum_probs=31.1
Q ss_pred cccccCCcccccC-CCCEEc-CCCCcccHhhHHHHHhhCCCCCC--CCcc
Q 000610 17 EYFCPVCRLLVYP-NEALQS-QCTHLYCKPCLTYIVNTTQACPY--DGYL 62 (1392)
Q Consensus 17 eLiCPICleVf~P-kDPVQT-sCGHtFCksCIeewLkSs~sCPv--CRkp 62 (1392)
.-.|.+|.+.|++ .|.|+| .|+-.|=+.|+++. ..|-. |...
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~~----g~C~~~~c~~~ 50 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEKA----GGCINYSCGTG 50 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhhC----CceEeccCCCC
Confidence 4579999998842 566777 99999999999775 45544 5443
No 178
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=36.38 E-value=26 Score=41.54 Aligned_cols=48 Identities=6% Similarity=-0.122 Sum_probs=35.0
Q ss_pred cCCCCcccccCCcccccCCCCEEcCCCC-cccHhhHHHHHhhCCCCCCCCccc
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTH-LYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQTsCGH-tFCksCIeewLkSs~sCPvCRkpI 63 (1392)
+.|-..+.|-+|.+-+ .......|+| +||..|.. +.-..+|++|....
T Consensus 338 ~~~~s~~~~~~~~~~~--~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 338 NGLMSSLKGTSAGFGL--LSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred ccchhhcccccccCce--eeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 4566678899999766 3444458886 59999987 44467999997643
No 179
>PF03145 Sina: Seven in absentia protein family; InterPro: IPR018121 The seven in absentia (sina) gene was first identified in Drosophila. The Drosophila Sina protein is essential for the determination of the R7 pathway in photoreceptor cell development: the loss of functional Sina results in the transformation of the R7 precursor cell to a non-neuronal cell type. The Sina protein contains an N-terminal RING finger domain C3HC4-type. Through this domain, Sina binds E2 ubiquitin-conjugating enzymes (UbcD1) Sina also interacts with Tramtrack (TTK88) via PHYL. Tramtrack is a transcriptional repressor that blocks photoreceptor determination, while PHYL down-regulates the activity of TTK88. In turn, the activity of PHYL requires the activation of the Sevenless receptor tyrosine kinase, a process essential for R7 determination. It is thought that Sina targets TTK88 for degradation, therefore promoting the R7 pathway. Murine and human homologues of Sina have also been identified. The human homologue Siah-1 [] also binds E2 enzymes (UbcH5) and through a series of physical interactions, targets beta-catenin for ubiquitin degradation. Siah-1 expression is enhanced by p53, itself promoted by DNA damage. Thus this pathway links DNA damage to beta-catenin degradation [, ]. Sina proteins, therefore, physically interact with a variety of proteins. The N-terminal RING finger domain that binds ubiquitin conjugating enzymes is a C3HC4-type, and does not form part of the alignment for this family. The remainder C-terminal part is involved in interactions with other proteins, and is included in this alignment. In addition to the Drosophila protein and mammalian homologues, whose similarity was noted previously, this family also includes putative homologues from Caenorhabditis elegans, Arabidopsis thaliana.; GO: 0006511 ubiquitin-dependent protein catabolic process, 0007275 multicellular organismal development, 0005634 nucleus; PDB: 2A25_A 1K2F_B 2AN6_C.
Probab=34.83 E-value=10 Score=40.98 Aligned_cols=38 Identities=13% Similarity=0.134 Sum_probs=23.3
Q ss_pred ccchhhcHHHHHHHHhcCCCCCCCCCC----CCCcccccccc
Q 000610 123 RCAIQIVHRQVQEHAQNCPGVQPQASQ----PEGVHDAAAIG 160 (1392)
Q Consensus 123 ~CgeqI~ReeLqeHLq~CPk~pVkCPq----cdgt~saas~s 160 (1392)
+|.+.+...++.+|.+.|.+.+..||. |++.-+...+.
T Consensus 23 GC~~~~~~~~~~~HE~~C~~~p~~CP~~~~~C~~~G~~~~l~ 64 (198)
T PF03145_consen 23 GCTETFPYSEKREHEEECPFRPCSCPFPGSGCDWQGSYKELL 64 (198)
T ss_dssp T---EE-GGGHHHHHHT-TTSEEE-SSSSTT---EEECCCHH
T ss_pred CCcccccccChhhHhccCCCcCCcCCCCCCCccccCCHHHHH
Confidence 699999999999999999999999998 44544433333
No 180
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=33.74 E-value=30 Score=42.50 Aligned_cols=6 Identities=50% Similarity=0.905 Sum_probs=2.5
Q ss_pred CCCCCC
Q 000610 1138 SHAHPD 1143 (1392)
Q Consensus 1138 ~~~~p~ 1143 (1392)
+..|||
T Consensus 353 ~~fHpD 358 (506)
T KOG0289|consen 353 AAFHPD 358 (506)
T ss_pred eeEcCC
Confidence 334444
No 181
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=33.33 E-value=41 Score=43.84 Aligned_cols=12 Identities=25% Similarity=0.310 Sum_probs=8.6
Q ss_pred CCCCCCcccccc
Q 000610 55 ACPYDGYLVTEA 66 (1392)
Q Consensus 55 sCPvCRkpIt~s 66 (1392)
.||.|-..++..
T Consensus 446 ~Cp~Cd~~lt~H 457 (730)
T COG1198 446 ECPNCDSPLTLH 457 (730)
T ss_pred cCCCCCcceEEe
Confidence 788887776543
No 182
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=33.24 E-value=6.1 Score=46.14 Aligned_cols=87 Identities=15% Similarity=0.218 Sum_probs=50.5
Q ss_pred CCCCCCCccccccCCcchhhhH---HHHHHHhcceeeecccCCCCCceeecccCCCccCCCCCCCCcCccCC----ccch
Q 000610 54 QACPYDGYLVTEADSKPLVESN---KALAETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCN----RCAI 126 (1392)
Q Consensus 54 ~sCPvCRkpIt~sdl~piL~~N---kaLeKEI~qL~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp----~Cge 126 (1392)
..||+|...+... ++.-+ .+...-..++..+|+. |.....-.....=+..++- ..+.|+ +|.+
T Consensus 49 leCPvC~~~l~~P----i~QC~nGHlaCssC~~~~~~~CP~----Cr~~~g~~R~~amEkV~e~--~~vpC~~~~~GC~~ 118 (299)
T KOG3002|consen 49 LDCPVCFNPLSPP----IFQCDNGHLACSSCRTKVSNKCPT----CRLPIGNIRCRAMEKVAEA--VLVPCKNAKLGCTK 118 (299)
T ss_pred ccCchhhccCccc----ceecCCCcEehhhhhhhhcccCCc----cccccccHHHHHHHHHHHh--ceecccccccCCce
Confidence 3899999877543 22222 1122222266677775 5443331111111122222 245553 7999
Q ss_pred hhcHHHHHHHHhcCCCCCCCCCCC
Q 000610 127 QIVHRQVQEHAQNCPGVQPQASQP 150 (1392)
Q Consensus 127 qI~ReeLqeHLq~CPk~pVkCPqc 150 (1392)
.+...+-.+|.+.|...+..||..
T Consensus 119 ~~~Y~~~~~HE~~C~f~~~~CP~p 142 (299)
T KOG3002|consen 119 SFPYGEKSKHEKVCEFRPCSCPVP 142 (299)
T ss_pred eeccccccccccccccCCcCCCCC
Confidence 888887799999999999999866
No 183
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=33.04 E-value=31 Score=30.14 Aligned_cols=40 Identities=23% Similarity=0.462 Sum_probs=24.2
Q ss_pred ccCCcccccCCCCEEcCCC--C---cccHhhHHHHHhh--CCCCCCC
Q 000610 20 CPVCRLLVYPNEALQSQCT--H---LYCKPCLTYIVNT--TQACPYD 59 (1392)
Q Consensus 20 CPICleVf~PkDPVQTsCG--H---tFCksCIeewLkS--s~sCPvC 59 (1392)
|-||++.-...++++..|. - ..=..||++|+.. +..|.+|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 7789976643345665444 3 4556899999985 3578887
No 184
>KOG3576 consensus Ovo and related transcription factors [Transcription]
Probab=32.74 E-value=11 Score=42.38 Aligned_cols=38 Identities=16% Similarity=0.301 Sum_probs=25.8
Q ss_pred cCCCccCCCCCCCCcCccCCccchhhcHH-HHHHHHhcCC
Q 000610 103 SECTSHCSGCAFGNSPVVCNRCAIQIVHR-QVQEHAQNCP 141 (1392)
Q Consensus 103 kELesH~esCey~~r~V~Cp~CgeqI~Re-eLqeHLq~CP 141 (1392)
-+|+.|.++-.-. ++.+|..|++.+..+ .|+.|+....
T Consensus 159 fdlkrh~rthtgv-rpykc~~c~kaftqrcsleshl~kvh 197 (267)
T KOG3576|consen 159 FDLKRHTRTHTGV-RPYKCSLCEKAFTQRCSLESHLKKVH 197 (267)
T ss_pred hhhhhhhccccCc-cccchhhhhHHHHhhccHHHHHHHHc
Confidence 3566677655443 688899999887755 4788876443
No 185
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=32.19 E-value=33 Score=40.88 Aligned_cols=25 Identities=16% Similarity=0.543 Sum_probs=14.7
Q ss_pred cccHhhHHHHHhhCCCCCCCCcccc
Q 000610 40 LYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 40 tFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
.||-.|-.+...--..||+|.-.+.
T Consensus 277 y~CP~CkakvCsLP~eCpiC~ltLV 301 (378)
T KOG2807|consen 277 YFCPQCKAKVCSLPIECPICSLTLV 301 (378)
T ss_pred eeCCcccCeeecCCccCCccceeEe
Confidence 3555555444333458999986543
No 186
>PF08894 DUF1838: Protein of unknown function (DUF1838); InterPro: IPR014990 This group of proteins are functionally uncharacterised.
Probab=32.08 E-value=27 Score=39.95 Aligned_cols=52 Identities=25% Similarity=0.525 Sum_probs=30.0
Q ss_pred CCCCCCCCCCCCcccccccCCCCCCCcc--cCCccccccccCC-CCCCCcceeEee
Q 000610 1276 NFPPPRLGEPGFRSSFSRQGFPNDGGFY--TGDMESIDNSRKR-KPPSMGWCRICK 1328 (1392)
Q Consensus 1276 ~~~~~~~~~p~~~~~~~~~gfp~~~~~~--~g~~~~~~~~r~~-k~~~~~wcric~ 1328 (1392)
+.+||-++|+-+. .||--|-=.-.-+| .++..++-|.-.. ++..|+|||||.
T Consensus 116 ~YPnPL~~d~q~~-~~s~g~~Y~A~ElF~f~~~~~dl~~~~~~~~~~~~sW~R~gp 170 (238)
T PF08894_consen 116 FYPNPLAGDPQYP-DYSPGGTYQATELFNFFVDRADLTNPEPTSAPVTMSWTRIGP 170 (238)
T ss_pred cCCCCcccccccc-ccCCcchhhhhhhhhhccChhhhcCCCcCcccceeeEEeccc
Confidence 4679999999985 67543322222222 2433232233222 577899999984
No 187
>COG0777 AccD Acetyl-CoA carboxylase beta subunit [Lipid metabolism]
Probab=31.67 E-value=24 Score=41.24 Aligned_cols=26 Identities=15% Similarity=0.510 Sum_probs=19.4
Q ss_pred CccCCccchhhcHHHHHHHHhcCCCC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
+++|+.|++.+.+++|..++..||++
T Consensus 28 w~KCp~c~~~~y~~eL~~n~~vcp~c 53 (294)
T COG0777 28 WTKCPSCGEMLYRKELESNLKVCPKC 53 (294)
T ss_pred eeECCCccceeeHHHHHhhhhccccc
Confidence 56777788877788888777777654
No 188
>PF09770 PAT1: Topoisomerase II-associated protein PAT1; InterPro: IPR019167 Proteins in this entry are necessary for accurate chromosome transmission during cell division []. ; PDB: 2XER_C 2XES_B 2XEQ_D.
Probab=31.43 E-value=16 Score=47.47 Aligned_cols=8 Identities=0% Similarity=0.156 Sum_probs=0.0
Q ss_pred eeecccCC
Q 000610 98 WQGPLSEC 105 (1392)
Q Consensus 98 wsgtLkEL 105 (1392)
+..+|..|
T Consensus 29 fedTYDGL 36 (808)
T PF09770_consen 29 FEDTYDGL 36 (808)
T ss_dssp --------
T ss_pred cccccccc
Confidence 33344433
No 189
>PF07948 Nairovirus_M: Nairovirus M polyprotein-like; InterPro: IPR012487 The sequences in this family are similar to the Dugbe virus (Dugbe nairovirus) M polyprotein precursor (Q02004 from SWISSPROT), which includes glycoproteins G1 and G2. Both are thought to be inserted in the membrane of the Golgi complex of the infected host cell, and G1 is known to have a role in infection of vertebrate hosts []. ; PDB: 2L7X_A.
Probab=31.28 E-value=6.1 Score=48.94 Aligned_cols=39 Identities=21% Similarity=0.537 Sum_probs=25.7
Q ss_pred cccCCCccCCCCCCCCcCccCCccchhhcHHHHHHHHhcCCCC
Q 000610 101 PLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 101 tLkELesH~esCey~~r~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
.+-|-+.|...|.|. .|+||...+..+-|..|+..||+.
T Consensus 506 N~~DqElHdLNCsyN----iCPYCanRLs~eGL~RHV~~CPKR 544 (645)
T PF07948_consen 506 NAIDQELHDLNCSYN----ICPYCANRLSDEGLVRHVPQCPKR 544 (645)
T ss_dssp SHHHHHHHHHHHTTT------TTT-----TTTHHHHHTT-SHH
T ss_pred chhhHHHHhcCCCcc----cChhhhhccCccchhhhcccCCch
Confidence 344556688999997 899999999999999999999984
No 190
>PRK14873 primosome assembly protein PriA; Provisional
Probab=31.24 E-value=26 Score=45.06 Aligned_cols=16 Identities=25% Similarity=0.636 Sum_probs=9.2
Q ss_pred CCCCCcCccCCccchh
Q 000610 112 CAFGNSPVVCNRCAIQ 127 (1392)
Q Consensus 112 Cey~~r~V~Cp~Cgeq 127 (1392)
|.+......|+.|+..
T Consensus 416 CG~~~~p~~Cp~Cgs~ 431 (665)
T PRK14873 416 CGRAAPDWRCPRCGSD 431 (665)
T ss_pred CcCCCcCccCCCCcCC
Confidence 4443335577777754
No 191
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.99 E-value=5.3 Score=47.99 Aligned_cols=46 Identities=15% Similarity=0.204 Sum_probs=37.1
Q ss_pred cccCCcccccCCCC----EEcCCCCcccHhhHHHHHhhCCCCCCCCcccccc
Q 000610 19 FCPVCRLLVYPNEA----LQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEA 66 (1392)
Q Consensus 19 iCPICleVf~PkDP----VQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~s 66 (1392)
.|.||..-+ +.- -.+.|||.+-..||++|+.+...|+.|+..+...
T Consensus 198 sl~I~~~sl--K~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~ 247 (465)
T KOG0827|consen 198 SLSICFESL--KQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKN 247 (465)
T ss_pred hhHhhHHHH--HHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhh
Confidence 489998776 332 2359999999999999999988999999876543
No 192
>PF10005 DUF2248: Uncharacterized protein conserved in bacteria (DUF2248); InterPro: IPR011201 This is a family of uncharacterised bacterial proteins.
Probab=30.82 E-value=52 Score=39.57 Aligned_cols=83 Identities=18% Similarity=0.382 Sum_probs=49.4
Q ss_pred cccCCcccccCCCCEEc-CCCCcccHhhHHHHHhhCCCCCCCCccccccCCcchhhhHHHHH--HHhcceeeecccC-CC
Q 000610 19 FCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALA--ETIGKITVHCLFH-RS 94 (1392)
Q Consensus 19 iCPICleVf~PkDPVQT-sCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~piL~~NkaLe--KEI~qL~VkCpNk-k~ 94 (1392)
.|..|...++ =+-..| .||+.. ..+|.++..+...... +.... ..-......|.|. ..
T Consensus 1 ~C~~Cg~~v~-FeNt~C~~Cg~~L------------Gf~p~~~~~~al~~~~-----~~~~~~~~~~~~~~~~C~N~~~~ 62 (343)
T PF10005_consen 1 SCPNCGQPVF-FENTRCLSCGSAL------------GFDPDRREMVALEPDG-----DGRWRAPAAPGRRYRRCANAEHA 62 (343)
T ss_pred CCCCCCCcce-eCCCccccCCccc------------cCCCCCCcEEeeccCC-----CCcccccCCCCceeeeCCCCCcc
Confidence 4888987553 233333 555543 4667766544332210 00111 1223456779886 36
Q ss_pred CCceeecccCCCccCCCCCCCCcCcc
Q 000610 95 GCTWQGPLSECTSHCSGCAFGNSPVV 120 (1392)
Q Consensus 95 GCqwsgtLkELesH~esCey~~r~V~ 120 (1392)
+|.|.....+-...|..|.+. +.+.
T Consensus 63 ~CNWlvp~~~~~~~C~aCrln-rtiP 87 (343)
T PF10005_consen 63 VCNWLVPADDPDALCRACRLN-RTIP 87 (343)
T ss_pred ccceeecCCCCCCcchhhhcc-CcCC
Confidence 899999988888889999986 4443
No 193
>smart00647 IBR In Between Ring fingers. the domains occurs between pairs og RING fingers
Probab=30.62 E-value=15 Score=32.03 Aligned_cols=35 Identities=17% Similarity=0.457 Sum_probs=24.4
Q ss_pred Cccccc--CCcccccCC----C-CEEc-CCCCcccHhhHHHHH
Q 000610 16 GEYFCP--VCRLLVYPN----E-ALQS-QCTHLYCKPCLTYIV 50 (1392)
Q Consensus 16 EeLiCP--ICleVf~Pk----D-PVQT-sCGHtFCksCIeewL 50 (1392)
+..-|+ -|..++... . .+.+ .|++.||..|...|-
T Consensus 17 ~~~~CP~~~C~~~~~~~~~~~~~~v~C~~C~~~fC~~C~~~~H 59 (64)
T smart00647 17 DLKWCPAPDCSAAIIVTEEEGCNRVTCPKCGFSFCFRCKVPWH 59 (64)
T ss_pred CccCCCCCCCcceEEecCCCCCCeeECCCCCCeECCCCCCcCC
Confidence 344599 898665322 1 3446 899999999988774
No 194
>PF03833 PolC_DP2: DNA polymerase II large subunit DP2; InterPro: IPR016033 DP2 is the large subunit of a two-subunit novel archaebacterial replicative DNA polymerase first characterised for Pyrococcus furiosus. The structure of DP2 appears to be organised as a ~950 residue component separated from a ~300 residue component by a ~150 residue intein. The other subunit, DP1, has sequence similarity to the eukaryotic DNA polymerase delta small subunit. This entry represents the N-terminal ~950 residue component of DP2.; GO: 0003887 DNA-directed DNA polymerase activity; PDB: 3O59_X.
Probab=30.45 E-value=17 Score=47.64 Aligned_cols=43 Identities=23% Similarity=0.443 Sum_probs=0.0
Q ss_pred cccccCCcccccCCCCEEc-CCCC-----cccHhhHHHHHhhCCCCCCCCcccc
Q 000610 17 EYFCPVCRLLVYPNEALQS-QCTH-----LYCKPCLTYIVNTTQACPYDGYLVT 64 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQT-sCGH-----tFCksCIeewLkSs~sCPvCRkpIt 64 (1392)
...|+-|...- --..| .||- .+|..|-.+... ..||.|.....
T Consensus 655 ~r~Cp~Cg~~t---~~~~Cp~CG~~T~~~~~Cp~C~~~~~~--~~C~~C~~~~~ 703 (900)
T PF03833_consen 655 RRRCPKCGKET---FYNRCPECGSHTEPVYVCPDCGIEVEE--DECPKCGRETT 703 (900)
T ss_dssp ------------------------------------------------------
T ss_pred cccCcccCCcc---hhhcCcccCCccccceeccccccccCc--cccccccccCc
Confidence 46799999766 22446 6883 499999987654 49999987544
No 195
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=30.21 E-value=26 Score=42.71 Aligned_cols=31 Identities=19% Similarity=0.455 Sum_probs=22.2
Q ss_pred CCCEEcCCCCcccHhhHHHHHhhCCCCCCCCc
Q 000610 30 NEALQSQCTHLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 30 kDPVQTsCGHtFCksCIeewLkSs~sCPvCRk 61 (1392)
...|.|.|+|.||..|...|.... .|..+..
T Consensus 177 ~~~v~C~~g~~FC~~C~~~~H~p~-~C~~~~~ 207 (444)
T KOG1815|consen 177 SVEVDCGCGHEFCFACGEESHSPV-SCPGAKK 207 (444)
T ss_pred ccceeCCCCchhHhhccccccCCC-cccchHH
Confidence 356779999999999988775432 5555443
No 196
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=29.79 E-value=26 Score=43.69 Aligned_cols=36 Identities=19% Similarity=0.473 Sum_probs=26.1
Q ss_pred CCcccccCCccccc--CCCCEEc---CCCCcccHhhHHHHH
Q 000610 15 AGEYFCPVCRLLVY--PNEALQS---QCTHLYCKPCLTYIV 50 (1392)
Q Consensus 15 eEeLiCPICleVf~--PkDPVQT---sCGHtFCksCIeewL 50 (1392)
-|+-.|-+|..... .-.|+-| .|-..||..||...-
T Consensus 453 ~eDq~CdeC~g~~c~~q~aPfFC~n~~C~QYYCe~CWa~~H 493 (520)
T KOG0129|consen 453 MEDQLCDECGGRRCGGQFAPFFCRNATCFQYYCESCWAKIH 493 (520)
T ss_pred ccccchhhhcCeeccCccCCcccCCccHHhhhchHHHHHhh
Confidence 37889999998330 0145555 899999999998764
No 197
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=29.57 E-value=17 Score=45.98 Aligned_cols=43 Identities=23% Similarity=0.678 Sum_probs=28.0
Q ss_pred CcccccCCc--ccccCC---CCEEc-CCCCcccHhhHHHHHhhCCCCCCCCc
Q 000610 16 GEYFCPVCR--LLVYPN---EALQS-QCTHLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 16 EeLiCPICl--eVf~Pk---DPVQT-sCGHtFCksCIeewLkSs~sCPvCRk 61 (1392)
.-++|.||. +++||- ....| .|+++|=+.|+.+. ...||.|-.
T Consensus 510 ~gfiCe~Cq~~~iiyPF~~~~~~rC~~C~avfH~~C~~r~---s~~CPrC~R 558 (580)
T KOG1829|consen 510 KGFICELCQHNDIIYPFETRNTRRCSTCLAVFHKKCLRRK---SPCCPRCER 558 (580)
T ss_pred CeeeeeeccCCCcccccccccceeHHHHHHHHHHHHHhcc---CCCCCchHH
Confidence 457788886 455442 12234 88888888888664 345999943
No 198
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=29.08 E-value=37 Score=30.74 Aligned_cols=39 Identities=23% Similarity=0.615 Sum_probs=21.2
Q ss_pred ccCCcccccCCCC---------EEc-CCCCcccHhhHHHHHhhCCCCCCCC
Q 000610 20 CPVCRLLVYPNEA---------LQS-QCTHLYCKPCLTYIVNTTQACPYDG 60 (1392)
Q Consensus 20 CPICleVf~PkDP---------VQT-sCGHtFCksCIeewLkSs~sCPvCR 60 (1392)
|--|+..| .+. +.+ .|.+.||.+|=.-+-++--.||-|.
T Consensus 2 CfgC~~~~--~~~~~~~~~~~~y~C~~C~~~FC~dCD~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 2 CFGCQKPF--PDGPEKKADSSRYRCPKCKNHFCIDCDVFIHETLHNCPGCE 50 (51)
T ss_dssp ETTTTEE---TTS-------EEE--TTTT--B-HHHHHTTTTTS-SSSTT-
T ss_pred CccCCCCC--CCcccccccCCeEECCCCCCccccCcChhhhccccCCcCCC
Confidence 55566666 332 334 8999999999765555556899884
No 199
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=28.24 E-value=31 Score=38.80 Aligned_cols=24 Identities=21% Similarity=0.552 Sum_probs=17.7
Q ss_pred ccccCCcccccC-CCCEEcCCCCcc
Q 000610 18 YFCPVCRLLVYP-NEALQSQCTHLY 41 (1392)
Q Consensus 18 LiCPICleVf~P-kDPVQTsCGHtF 41 (1392)
|.||||...|.. ...+.|.++|.|
T Consensus 3 ~~CP~C~~~l~~~~~~~~C~~~h~f 27 (272)
T PRK11088 3 YQCPLCHQPLTLEENSWICPQNHQF 27 (272)
T ss_pred ccCCCCCcchhcCCCEEEcCCCCCC
Confidence 789999988731 234668888888
No 200
>COG0068 HypF Hydrogenase maturation factor [Posttranslational modification, protein turnover, chaperones]
Probab=28.03 E-value=23 Score=45.74 Aligned_cols=19 Identities=21% Similarity=0.441 Sum_probs=12.2
Q ss_pred cchHHhhccCCCCCCCCCC
Q 000610 1051 GEFEEDLKQFSRPSHLDAE 1069 (1392)
Q Consensus 1051 ~~f~~~~k~f~~~~~ld~~ 1069 (1392)
+-|+|-|++|.+-..++-+
T Consensus 434 ~~~~ea~~~~~~~~~~~pd 452 (750)
T COG0068 434 EFFREALRHFLKIYDFEPD 452 (750)
T ss_pred HHHHHHHHHHHHHhcCCCc
Confidence 5567777777776555443
No 201
>KOG3896 consensus Dynactin, subunit p62 [Cell motility]
Probab=27.66 E-value=30 Score=41.34 Aligned_cols=91 Identities=15% Similarity=0.364 Sum_probs=51.3
Q ss_pred cCCCCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHh------hC-----CCCCCCCccccccCCc--chhhhHHHH
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVN------TT-----QACPYDGYLVTEADSK--PLVESNKAL 78 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLk------Ss-----~sCPvCRkpIt~sdl~--piL~~NkaL 78 (1392)
..|.+.+.|--|.++-. .+.+.-.=...||..||+..-. ++ .-||.|-..+...... .-+..|-+-
T Consensus 19 ~pl~~L~FCRyC~klrc-~~Cv~hEvdshfCp~CLEn~ps~EArlKKn~CAnCfDCP~C~htLSaRa~~~stq~p~dpak 97 (449)
T KOG3896|consen 19 RPLPDLVFCRYCFKLRC-DDCVLHEVDSHFCPRCLENSPSPEARLKKNKCANCFDCPKCAHTLSARAENDSTQLPDDPAK 97 (449)
T ss_pred ccccceeeeeccccccc-ccccccccccccchhhccCCCchHHHhhhccccccccCcchhhhhhhhcccccccCCCChhh
Confidence 56888899999988762 3444446667899999986432 11 2577776544321100 001112222
Q ss_pred HHHhcceeeecccCCCCCceeecccCCCc
Q 000610 79 AETIGKITVHCLFHRSGCTWQGPLSECTS 107 (1392)
Q Consensus 79 eKEI~qL~VkCpNkk~GCqwsgtLkELes 107 (1392)
..+-....+.|.+ |-|...-..+.+
T Consensus 98 tt~kk~yYL~C~~----CRWtsRdvg~~D 122 (449)
T KOG3896|consen 98 TTMKKNYYLVCQY----CRWTSRDVGQED 122 (449)
T ss_pred hhhhheeEEeeee----eeccccccCCcc
Confidence 2333455677876 888766544444
No 202
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=27.65 E-value=42 Score=37.08 Aligned_cols=41 Identities=20% Similarity=0.778 Sum_probs=30.3
Q ss_pred CcccccCCc--ccccCCC---CEEc-CCCCcccHhhHHHHHhhCCCCCCCCc
Q 000610 16 GEYFCPVCR--LLVYPNE---ALQS-QCTHLYCKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 16 EeLiCPICl--eVf~PkD---PVQT-sCGHtFCksCIeewLkSs~sCPvCRk 61 (1392)
.-++|-||. ++++|-+ .+.| .|+.+|=+.|+.+ ..||.|..
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~~-----~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFRK-----KSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcCC-----CCCCCcHh
Confidence 468899998 5665533 3445 8999999999974 57999954
No 203
>PRK11595 DNA utilization protein GntX; Provisional
Probab=27.50 E-value=40 Score=37.49 Aligned_cols=38 Identities=21% Similarity=0.497 Sum_probs=22.5
Q ss_pred cccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccc
Q 000610 19 FCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLV 63 (1392)
Q Consensus 19 iCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpI 63 (1392)
.|.+|...+ ... ....|..|+..+......|+.|...+
T Consensus 7 ~C~~C~~~~--~~~-----~~~lC~~C~~~l~~~~~~C~~Cg~~~ 44 (227)
T PRK11595 7 LCWLCRMPL--ALS-----HWGICSVCSRALRTLKTCCPQCGLPA 44 (227)
T ss_pred cCccCCCcc--CCC-----CCcccHHHHhhCCcccCcCccCCCcC
Confidence 488888765 211 12368888777543234677777653
No 204
>KOG1044 consensus Actin-binding LIM Zn-finger protein Limatin involved in axon guidance [Signal transduction mechanisms; Cytoskeleton]
Probab=27.39 E-value=22 Score=44.96 Aligned_cols=111 Identities=15% Similarity=0.227 Sum_probs=67.5
Q ss_pred CCCcccccCCcccccCCCCEEcCCC-CcccHhhHHHHHhh------CCCCCCCCccccccCCcchhhhHHHHHHHhccee
Q 000610 14 LAGEYFCPVCRLLVYPNEALQSQCT-HLYCKPCLTYIVNT------TQACPYDGYLVTEADSKPLVESNKALAETIGKIT 86 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQTsCG-HtFCksCIeewLkS------s~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~ 86 (1392)
...-+.|.+|...+.+ .-..+.|| -..|..|..-.-.. -..|-.|...|.... .|-.....+-
T Consensus 88 h~~cf~cs~ck~pf~~-g~~vt~~gk~~~c~~c~~~~~~~p~~~~~ps~cagc~~~lk~gq---------~llald~qwh 157 (670)
T KOG1044|consen 88 HPKCFSCSTCKSPFKS-GDKVTFSGKECLCQTCSQPMPVSPAESYGPSTCAGCGEELKNGQ---------ALLALDKQWH 157 (670)
T ss_pred ccccceecccCCCCCC-CCeeeecchhhhhhhhcCcccCCcccccCCccccchhhhhhccc---------eeeeecccee
Confidence 4567889999998842 33445555 45677776543322 247888887765443 2334455677
Q ss_pred eecccCCCCCceeecccCCCcc----CCCCCCCCcCccCCccchhhcHHHHHH
Q 000610 87 VHCLFHRSGCTWQGPLSECTSH----CSGCAFGNSPVVCNRCAIQIVHRQVQE 135 (1392)
Q Consensus 87 VkCpNkk~GCqwsgtLkELesH----~esCey~~r~V~Cp~CgeqI~ReeLqe 135 (1392)
|.|-.+ ..|..+..-+.+-.| |+.|-+..--++|..|...|.-+-|+.
T Consensus 158 v~cfkc-~~c~~vL~gey~skdg~pyce~dy~~~fgvkc~~c~~fisgkvLqa 209 (670)
T KOG1044|consen 158 VSCFKC-KSCSAVLNGEYMSKDGVPYCEKDYQAKFGVKCEECEKFISGKVLQA 209 (670)
T ss_pred eeeeeh-hhhcccccceeeccCCCcchhhhhhhhcCeehHHhhhhhhhhhhhc
Confidence 888654 345555554444444 344443344688999998888776664
No 205
>TIGR00622 ssl1 transcription factor ssl1. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=27.26 E-value=68 Score=33.24 Aligned_cols=25 Identities=20% Similarity=0.683 Sum_probs=16.6
Q ss_pred CCCCcccHhhHHHHHhhCCCCCCCC
Q 000610 36 QCTHLYCKPCLTYIVNTTQACPYDG 60 (1392)
Q Consensus 36 sCGHtFCksCIeewLkSs~sCPvCR 60 (1392)
.|.+.||.+|=.-+-+.-..||-|.
T Consensus 86 ~C~~~FC~dCD~fiHe~Lh~CPGC~ 110 (112)
T TIGR00622 86 VCKNVFCVDCDVFVHESLHCCPGCI 110 (112)
T ss_pred CCCCccccccchhhhhhccCCcCCC
Confidence 6777777777666555555677664
No 206
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=26.92 E-value=17 Score=46.41 Aligned_cols=45 Identities=16% Similarity=0.378 Sum_probs=32.4
Q ss_pred CCcccccCCcccccCCCCEE---c-CCCCcccHhhHHHHHhh--------CCCCCCCCc
Q 000610 15 AGEYFCPVCRLLVYPNEALQ---S-QCTHLYCKPCLTYIVNT--------TQACPYDGY 61 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQ---T-sCGHtFCksCIeewLkS--------s~sCPvCRk 61 (1392)
.+...|-+|...| .---. | .||-+||..|..+.+.- -++|=.|-+
T Consensus 163 ~D~~~C~rCr~~F--~~~~rkHHCr~CG~vFC~qcss~s~~lP~~Gi~~~VRVCd~C~E 219 (634)
T KOG1818|consen 163 IDSEECLRCRVKF--GLTNRKHHCRNCGQVFCGQCSSKSLTLPKLGIEKPVRVCDSCYE 219 (634)
T ss_pred ccccccceeeeee--eeccccccccccchhhccCccccccCcccccccccceehhhhHH
Confidence 4567899999888 22212 5 99999999999886642 147888844
No 207
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=26.84 E-value=22 Score=38.06 Aligned_cols=28 Identities=32% Similarity=0.791 Sum_probs=20.0
Q ss_pred ccccCCcccccCCCCEEc-CCCCcccH-hhHHHH
Q 000610 18 YFCPVCRLLVYPNEALQS-QCTHLYCK-PCLTYI 49 (1392)
Q Consensus 18 LiCPICleVf~PkDPVQT-sCGHtFCk-sCIeew 49 (1392)
-.|.||. ++ ....| .||..||. .|+...
T Consensus 119 ~fCaVCG-~~---S~ysC~~CG~kyCsv~C~~~H 148 (156)
T KOG3362|consen 119 KFCAVCG-YD---SKYSCVNCGTKYCSVRCLKTH 148 (156)
T ss_pred hhhhhcC-CC---chhHHHhcCCceeechhhhhc
Confidence 3699999 33 44555 99999987 777554
No 208
>KOG2979 consensus Protein involved in DNA repair [General function prediction only]
Probab=26.78 E-value=41 Score=39.00 Aligned_cols=40 Identities=23% Similarity=0.456 Sum_probs=33.9
Q ss_pred cccccCCcccccCCCCEEc-CCCCcccHhhHHHHHhh--CCCCCC
Q 000610 17 EYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT--TQACPY 58 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQT-sCGHtFCksCIeewLkS--s~sCPv 58 (1392)
.+.|||-+..+ ..|++. .|+|+|=++-|..++.. ...||+
T Consensus 176 s~rdPis~~~I--~nPviSkkC~HvydrDsI~~~l~~~~~i~CPv 218 (262)
T KOG2979|consen 176 SNRDPISKKPI--VNPVISKKCGHVYDRDSIMQILCDEITIRCPV 218 (262)
T ss_pred cccCchhhhhh--hchhhhcCcCcchhhhhHHHHhccCceeeccc
Confidence 57799988877 788884 99999999999998875 568997
No 209
>KOG1356 consensus Putative transcription factor 5qNCA, contains JmjC domain [Transcription]
Probab=26.34 E-value=19 Score=47.02 Aligned_cols=11 Identities=27% Similarity=0.253 Sum_probs=4.9
Q ss_pred cccCCCCCCCC
Q 000610 1255 ETVGLGGFPGP 1265 (1392)
Q Consensus 1255 ~~~g~g~~~g~ 1265 (1392)
|+|-|--|+|-
T Consensus 797 e~WtfvQ~LGd 807 (889)
T KOG1356|consen 797 EPWTFVQFLGD 807 (889)
T ss_pred Cccchhhcccc
Confidence 44544444443
No 210
>PF05502 Dynactin_p62: Dynactin p62 family; InterPro: IPR008603 Dynactin is a multi-subunit complex and a required cofactor for most, or all, o f the cellular processes powered by the microtubule-based motor cytoplasmic dyn ein. p62 binds directly to the Arp1 subunit of dynactin [, ].
Probab=25.69 E-value=30 Score=42.96 Aligned_cols=11 Identities=18% Similarity=0.437 Sum_probs=6.4
Q ss_pred ccCCccchhhc
Q 000610 119 VVCNRCAIQIV 129 (1392)
Q Consensus 119 V~Cp~CgeqI~ 129 (1392)
..|+.|...+.
T Consensus 53 f~CP~C~~~L~ 63 (483)
T PF05502_consen 53 FDCPICFSPLS 63 (483)
T ss_pred ccCCCCCCcce
Confidence 45666665544
No 211
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=25.61 E-value=32 Score=44.20 Aligned_cols=25 Identities=12% Similarity=0.317 Sum_probs=16.6
Q ss_pred cCCCCcccHhhHHHHHhhCCCCCCC
Q 000610 35 SQCTHLYCKPCLTYIVNTTQACPYD 59 (1392)
Q Consensus 35 TsCGHtFCksCIeewLkSs~sCPvC 59 (1392)
..-|-.||++|-..-.....+|-+|
T Consensus 44 VPtGpWfCrKCesqeraarvrCeLC 68 (900)
T KOG0956|consen 44 VPTGPWFCRKCESQERAARVRCELC 68 (900)
T ss_pred cCCCchhhhhhhhhhhhccceeecc
Confidence 3446679999987655545566666
No 212
>KOG2893 consensus Zn finger protein [General function prediction only]
Probab=25.51 E-value=30 Score=39.67 Aligned_cols=19 Identities=32% Similarity=0.788 Sum_probs=16.0
Q ss_pred ccCCCCCCCcceeEeeccc
Q 000610 1313 SRKRKPPSMGWCRICKVDC 1331 (1392)
Q Consensus 1313 ~r~~k~~~~~wcric~~~c 1331 (1392)
+||+|--+--||..||.+-
T Consensus 2 grkkkk~~kpwcwycnref 20 (341)
T KOG2893|consen 2 GRKKKKVDKPWCWYCNREF 20 (341)
T ss_pred CccccccCCceeeeccccc
Confidence 5888888999999998763
No 213
>KOG4684 consensus Uncharacterized conserved protein, contains C4-type Zn-finger [General function prediction only]
Probab=25.17 E-value=76 Score=36.18 Aligned_cols=56 Identities=14% Similarity=0.287 Sum_probs=37.0
Q ss_pred eeeecccCCCCCceeecccCCCccCCCC---CCCCcCccCCccchhhcHHHHHHHHhcCCCC
Q 000610 85 ITVHCLFHRSGCTWQGPLSECTSHCSGC---AFGNSPVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 85 L~VkCpNkk~GCqwsgtLkELesH~esC---ey~~r~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
.++.|+. ..|+-+..+.-+..--..= .- -.-++|..|++.+....+.+-+..||++
T Consensus 137 qRIACPR--pnCkRiInL~p~~~~p~~P~~~P~-gcRV~CgHC~~tFLfnt~tnaLArCPHC 195 (275)
T KOG4684|consen 137 QRIACPR--PNCKRIINLDPLIEKPRDPGTAPT-GCRVKCGHCNETFLFNTLTNALARCPHC 195 (275)
T ss_pred ceeccCC--CCcceeeecCCCCCCCCCCCCCCc-ceEEEecCccceeehhhHHHHHhcCCcc
Confidence 3566664 4677777766554321110 11 1247899999999999999988888876
No 214
>COG1675 TFA1 Transcription initiation factor IIE, alpha subunit [Transcription]
Probab=25.13 E-value=77 Score=34.99 Aligned_cols=39 Identities=26% Similarity=0.436 Sum_probs=28.3
Q ss_pred CCcccccCCcccccCCCCEEcCCCCcccHhhHHHHHhhCCCCCCCCccccccCCcc
Q 000610 15 AGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKP 70 (1392)
Q Consensus 15 eEeLiCPICleVf~PkDPVQTsCGHtFCksCIeewLkSs~sCPvCRkpIt~sdl~p 70 (1392)
..-|.|+.|..-+. +.+......+||.|+..+...+...
T Consensus 111 ~~~y~C~~~~~r~s-----------------fdeA~~~~F~Cp~Cg~~L~~~d~s~ 149 (176)
T COG1675 111 NNYYVCPNCHVKYS-----------------FDEAMELGFTCPKCGEDLEEYDSSE 149 (176)
T ss_pred CCceeCCCCCCccc-----------------HHHHHHhCCCCCCCCchhhhccchH
Confidence 45678888887661 5566666689999999888777544
No 215
>PRK10263 DNA translocase FtsK; Provisional
Probab=24.30 E-value=1.7e+02 Score=40.87 Aligned_cols=14 Identities=29% Similarity=0.309 Sum_probs=6.1
Q ss_pred CCCCcccccccccc
Q 000610 1370 DRCSSDDANKSRNV 1383 (1392)
Q Consensus 1370 ~~~~~~~~~~~~~~ 1383 (1392)
|-.+..|++|.|++
T Consensus 1335 Giv~p~~gsk~ReV 1348 (1355)
T PRK10263 1335 GIVSEQGHNGNREV 1348 (1355)
T ss_pred CcCCCCCCCCCCeE
Confidence 34444444444443
No 216
>PF13240 zinc_ribbon_2: zinc-ribbon domain
Probab=23.30 E-value=15 Score=28.11 Aligned_cols=20 Identities=30% Similarity=0.639 Sum_probs=7.9
Q ss_pred cHhhHHHHHhhCCCCCCCCc
Q 000610 42 CKPCLTYIVNTTQACPYDGY 61 (1392)
Q Consensus 42 CksCIeewLkSs~sCPvCRk 61 (1392)
|..|=.++......|+.|+.
T Consensus 2 Cp~CG~~~~~~~~fC~~CG~ 21 (23)
T PF13240_consen 2 CPNCGAEIEDDAKFCPNCGT 21 (23)
T ss_pred CcccCCCCCCcCcchhhhCC
Confidence 33333333333344555543
No 217
>KOG3815 consensus Transcription factor Doublesex [Transcription]
Probab=23.21 E-value=51 Score=38.84 Aligned_cols=41 Identities=24% Similarity=0.569 Sum_probs=32.8
Q ss_pred eeeecccCCCCCceeecccCCCccCCCCCCCCcCccCCccchhhcHH
Q 000610 85 ITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIVHR 131 (1392)
Q Consensus 85 L~VkCpNkk~GCqwsgtLkELesH~esCey~~r~V~Cp~CgeqI~Re 131 (1392)
...+|. .|.-.+.+..|+-|-..|.|. .+.|..|.....|.
T Consensus 35 r~p~Ca----RCrnHG~~~~LKGHk~~C~~~--~C~C~kC~li~eRq 75 (322)
T KOG3815|consen 35 RGPKCA----RCENHGVLSRLKGHKRSCPYR--DCPCEKCGLVEERR 75 (322)
T ss_pred ccchhh----hhhccCcceeccCCCCCCCCC--CCCchHhcchHHHH
Confidence 345675 488889999999999999997 89999998654433
No 218
>smart00064 FYVE Protein present in Fab1, YOTB, Vac1, and EEA1. The FYVE zinc finger is named after four proteins where it was first found: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two Zn2+ ions. The FYVE finger has eight potential zinc coordinating cysteine positions. The FYVE finger is structurally related to the smart00818 Amelogenin Amelogenins, cell adhesion proteins, play a role in the biomineralisation of teeth. They seem to regulate formation of crystallites during the secretory stage of tooth enamel development and are thought to play a major role in the structural organisation and mineralisation of developing enamel. The extracellular matrix of the developing enamel comprises two major classes of protein: the hydrophobic amelogenins and the acidic enamelins. Circular dichroism studies of porcine amelogenin have shown that the protein consists of 3 discrete folding units: the N-terminal region appears to contain beta-strand structures, while the C-terminal region displays characteristics of a random coil conformation. Subsequent studies on the bovine protein have indicated the amelogenin structure to contain a repetitive beta-turn segment and a "beta-spiral" between Gln112 and Leu138, which sequester a (Pro, Leu, Gln) rich region. The beta-spiral offers a probable site for interactions w
Probab=22.76 E-value=3.9e+02 Score=29.62 Aligned_cols=25 Identities=32% Similarity=0.555 Sum_probs=11.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCC
Q 000610 488 GLPPLGQVANIPPAQQLPVRPHAPQ 512 (1392)
Q Consensus 488 ~l~~~~~~~~~~~~~~~~~~~~~~~ 512 (1392)
++|..++-.|++.+.|.++.+|+-+
T Consensus 82 ~~P~~~hq~~lP~P~Q~P~qPq~~q 106 (165)
T smart00818 82 MTPTQHHQPNLPPPAQQPFQPQPLQ 106 (165)
T ss_pred cCCCCCCCcCCCCCccCCcCCCCCC
Confidence 3343444444444455666655443
No 220
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=22.68 E-value=46 Score=31.76 Aligned_cols=13 Identities=23% Similarity=0.672 Sum_probs=9.2
Q ss_pred cccHhhHHHHHhh
Q 000610 40 LYCKPCLTYIVNT 52 (1392)
Q Consensus 40 tFCksCIeewLkS 52 (1392)
-||+.||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 3999999999863
No 221
>KOG4274 consensus Positive cofactor 2 (PC2), subunit of a multiprotein coactivator of RNA polymerase II [Transcription]
Probab=22.52 E-value=1.9e+03 Score=28.96 Aligned_cols=13 Identities=15% Similarity=0.230 Sum_probs=7.4
Q ss_pred hhhhhhhhhhccC
Q 000610 797 FGEQSEKVQKEQK 809 (1392)
Q Consensus 797 ~~~~~~~~~~~~~ 809 (1392)
|..|++.+..--+
T Consensus 713 LntWe~~V~Qac~ 725 (742)
T KOG4274|consen 713 LNTWEEQVNQACN 725 (742)
T ss_pred HHHHHHHHHHHhc
Confidence 5667776554433
No 222
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.47 E-value=46 Score=38.68 Aligned_cols=51 Identities=18% Similarity=0.334 Sum_probs=35.2
Q ss_pred cCCCCcccccCCcccccCCCCEE-----cCCC---CcccHhhHHHHHhhC--------CCCCCCCccc
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQ-----SQCT---HLYCKPCLTYIVNTT--------QACPYDGYLV 63 (1392)
Q Consensus 12 E~LeEeLiCPICleVf~PkDPVQ-----TsCG---HtFCksCIeewLkSs--------~sCPvCRkpI 63 (1392)
++-+.+-.|-||...=. ++... |.|. |-.-..||..|+.++ ..||.|+...
T Consensus 15 ~~~e~eR~CWiCF~Tde-Dn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEY 81 (293)
T KOG3053|consen 15 DNQELERCCWICFATDE-DNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEY 81 (293)
T ss_pred CccccceeEEEEeccCc-ccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchh
Confidence 45667889999997651 23222 4443 557789999999853 2799998753
No 223
>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A.
Probab=22.36 E-value=11 Score=35.02 Aligned_cols=30 Identities=20% Similarity=0.402 Sum_probs=24.5
Q ss_pred CcceeEeecccccccCccccchhHHHHhhh
Q 000610 1321 MGWCRICKVDCETVDGLDLHSQTREHQKMA 1350 (1392)
Q Consensus 1321 ~~wcric~~~c~tve~l~~h~~trehq~~a 1350 (1392)
.--|.+|.....+++.|..|..+..|.+++
T Consensus 50 ~~~C~~C~~~f~s~~~l~~Hm~~~~H~~~~ 79 (100)
T PF12756_consen 50 SFRCPYCNKTFRSREALQEHMRSKHHKKRN 79 (100)
T ss_dssp SEEBSSSS-EESSHHHHHHHHHHTTTTC-S
T ss_pred CCCCCccCCCCcCHHHHHHHHcCccCCCcc
Confidence 355999999999999999999998887654
No 224
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=22.34 E-value=21 Score=38.87 Aligned_cols=60 Identities=20% Similarity=0.446 Sum_probs=34.5
Q ss_pred cccccCCcccccCCCCEEcCCCCcccHhh-----HHHHHhh-CCCCCCCCccccccCCcchhhhHHHHHHHhcceeeecc
Q 000610 17 EYFCPVCRLLVYPNEALQSQCTHLYCKPC-----LTYIVNT-TQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCL 90 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQTsCGHtFCksC-----IeewLkS-s~sCPvCRkpIt~sdl~piL~~NkaLeKEI~qL~VkCp 90 (1392)
-+.|+||.+++.++| ..|--++|..= -+..++. +..|-+|-+.+...+ .|..|...|.
T Consensus 138 g~KCPvC~K~V~sDd---~e~HlvMCLtkPrlsYNdDVL~ddkGECvICLEdL~~Gd-------------tIARLPCLCI 201 (205)
T KOG0801|consen 138 GMKCPVCHKVVPSDD---AEIHLVMCLTKPRLSYNDDVLKDDKGECVICLEDLEAGD-------------TIARLPCLCI 201 (205)
T ss_pred CccCCccccccCCCc---ceEEEEEEecccccccccchhcccCCcEEEEhhhccCCC-------------ceeccceEEE
Confidence 478999998873332 34555554311 1112222 348888876655443 3666777787
Q ss_pred cC
Q 000610 91 FH 92 (1392)
Q Consensus 91 Nk 92 (1392)
|+
T Consensus 202 YH 203 (205)
T KOG0801|consen 202 YH 203 (205)
T ss_pred ee
Confidence 75
No 225
>KOG3362 consensus Predicted BBOX Zn-finger protein [General function prediction only]
Probab=22.16 E-value=38 Score=36.44 Aligned_cols=46 Identities=17% Similarity=0.453 Sum_probs=35.1
Q ss_pred CceeecccCCCccCCCCCCCCcCccCCccchhhc-HHHHHHHHhc-CCC
Q 000610 96 CTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIV-HRQVQEHAQN-CPG 142 (1392)
Q Consensus 96 CqwsgtLkELesH~esCey~~r~V~Cp~CgeqI~-ReeLqeHLq~-CPk 142 (1392)
|-..-.++-+...|..|.|. ....|-.||..++ ..++..|.++ |.+
T Consensus 108 ~~a~p~~KP~r~fCaVCG~~-S~ysC~~CG~kyCsv~C~~~HneTRC~k 155 (156)
T KOG3362|consen 108 AYAKPSFKPLRKFCAVCGYD-SKYSCVNCGTKYCSVRCLKTHNETRCMK 155 (156)
T ss_pred cccCCCCCCcchhhhhcCCC-chhHHHhcCCceeechhhhhcccccccc
Confidence 33334455788899999985 7889999999877 5678899874 865
No 226
>TIGR00515 accD acetyl-CoA carboxylase, carboxyl transferase, beta subunit. The enzyme acetyl-CoA carboxylase contains a biotin carboxyl carrier protein or domain, a biotin carboxylase, and a carboxyl transferase. This model represents the beta chain of the carboxyl transferase for cases in which the architecture of the protein is as in E. coli, in which the carboxyltransferase portion consists of two non-identical subnits, alpha and beta.
Probab=22.01 E-value=48 Score=38.72 Aligned_cols=26 Identities=15% Similarity=0.544 Sum_probs=20.3
Q ss_pred CccCCccchhhcHHHHHHHHhcCCCC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
+++|+.|++.+.+++|.+.+..||++
T Consensus 26 ~~~c~~c~~~~~~~~l~~~~~vc~~c 51 (285)
T TIGR00515 26 WTKCPKCGQVLYTKELERNLEVCPKC 51 (285)
T ss_pred eeECCCCcchhhHHHHHhhCCCCCCC
Confidence 46888888888888888887777754
No 227
>CHL00174 accD acetyl-CoA carboxylase beta subunit; Reviewed
Probab=21.99 E-value=46 Score=39.24 Aligned_cols=26 Identities=15% Similarity=0.270 Sum_probs=21.1
Q ss_pred CccCCccchhhcHHHHHHHHhcCCCC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNCPGV 143 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~CPk~ 143 (1392)
+.+|+.|+..+.+++|.+.+..||++
T Consensus 38 w~kc~~C~~~~~~~~l~~~~~vcp~c 63 (296)
T CHL00174 38 WVQCENCYGLNYKKFLKSKMNICEQC 63 (296)
T ss_pred eeECCCccchhhHHHHHHcCCCCCCC
Confidence 57888899888888888887777754
No 228
>PF01485 IBR: IBR domain; InterPro: IPR002867 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a cysteine-rich (C6HC) zinc finger domain that is present in Triad1, and which is conserved in other proteins encoded by various eukaryotes. The C6HC consensus pattern is: C-x(4)-C-x(14-30)-C-x(1-4)-C-x(4)-C-x(2)-C-x(4)-H-x(4)-C The C6HC zinc finger motif is the fourth family member of the zinc-binding RING, LIM, and LAP/PHD fingers. Strikingly, in most of the proteins the C6HC domain is flanked by two RING finger structures IPR001841 from INTERPRO. The novel C6HC motif has been called DRIL (double RING finger linked). The strong conservation of the larger tripartite TRIAD (twoRING fingers and DRIL) structure indicates that the three subdomains are functionally linked and identifies a novel class of proteins []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CT7_A 1WD2_A 2JMO_A 1WIM_A.
Probab=21.93 E-value=17 Score=31.71 Aligned_cols=34 Identities=18% Similarity=0.595 Sum_probs=18.9
Q ss_pred CcccccC--CcccccCCC---C--EEcC-CCCcccHhhHHHH
Q 000610 16 GEYFCPV--CRLLVYPNE---A--LQSQ-CTHLYCKPCLTYI 49 (1392)
Q Consensus 16 EeLiCPI--CleVf~PkD---P--VQTs-CGHtFCksCIeew 49 (1392)
+...|+- |..++...+ . +.+. |++.||..|...|
T Consensus 17 ~~~~Cp~~~C~~~~~~~~~~~~~~~~C~~C~~~fC~~C~~~~ 58 (64)
T PF01485_consen 17 NIRWCPNPDCEYIIEKDDGCNSPIVTCPSCGTEFCFKCGEPW 58 (64)
T ss_dssp -CC--TTSST---ECS-SSTTS--CCTTSCCSEECSSSTSES
T ss_pred CccCCCCCCCcccEEecCCCCCCeeECCCCCCcCccccCccc
Confidence 3347988 997763222 2 5565 9999999998766
No 229
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=21.74 E-value=55 Score=40.69 Aligned_cols=18 Identities=22% Similarity=0.724 Sum_probs=10.6
Q ss_pred CCCCCC-CcCccCCccchh
Q 000610 110 SGCAFG-NSPVVCNRCAIQ 127 (1392)
Q Consensus 110 esCey~-~r~V~Cp~Cgeq 127 (1392)
-.|.|. .....|+.|+..
T Consensus 244 h~Cg~~~~~~~~Cp~C~s~ 262 (505)
T TIGR00595 244 HYCGYQEPIPKTCPQCGSE 262 (505)
T ss_pred CCCcCcCCCCCCCCCCCCC
Confidence 345554 225578888764
No 230
>PRK05654 acetyl-CoA carboxylase subunit beta; Validated
Probab=21.39 E-value=49 Score=38.81 Aligned_cols=25 Identities=16% Similarity=0.521 Sum_probs=16.5
Q ss_pred CccCCccchhhcHHHHHHHHhcCCC
Q 000610 118 PVVCNRCAIQIVHRQVQEHAQNCPG 142 (1392)
Q Consensus 118 ~V~Cp~CgeqI~ReeLqeHLq~CPk 142 (1392)
+++|+.|+..+.+++|.+.+..|++
T Consensus 27 ~~~c~~c~~~~~~~~l~~~~~vc~~ 51 (292)
T PRK05654 27 WTKCPSCGQVLYRKELEANLNVCPK 51 (292)
T ss_pred eeECCCccchhhHHHHHhcCCCCCC
Confidence 4567777777777777666656654
No 231
>PHA02335 hypothetical protein
Probab=21.29 E-value=28 Score=35.73 Aligned_cols=20 Identities=35% Similarity=0.552 Sum_probs=16.4
Q ss_pred CCCCccCCccchHHhhccCC
Q 000610 1042 DPARSVIDRGEFEEDLKQFS 1061 (1392)
Q Consensus 1042 ~p~~~~~~~~~f~~~~k~f~ 1061 (1392)
|-+-..|++.|||||||.|+
T Consensus 19 Y~np~sVt~ddf~~DlkRi~ 38 (118)
T PHA02335 19 YNNPQSVTYDDFEEDLKRFK 38 (118)
T ss_pred cCCcccccHHHHHHHHHHHH
Confidence 34456799999999999986
No 232
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=20.88 E-value=63 Score=26.31 Aligned_cols=10 Identities=50% Similarity=1.417 Sum_probs=8.2
Q ss_pred ccccCCcccc
Q 000610 18 YFCPVCRLLV 27 (1392)
Q Consensus 18 LiCPICleVf 27 (1392)
++|.+|..+.
T Consensus 2 ~~C~~CGy~y 11 (33)
T cd00350 2 YVCPVCGYIY 11 (33)
T ss_pred EECCCCCCEE
Confidence 5788998887
No 233
>COG5627 MMS21 DNA repair protein MMS21 [DNA replication, recombination, and repair]
Probab=20.52 E-value=42 Score=38.61 Aligned_cols=59 Identities=15% Similarity=0.158 Sum_probs=40.4
Q ss_pred cccccCCcccccCCCCEE-cCCCCcccHhhHHHHHh--hCCCCCC--CCccccccCCcchhhhHHHHHHH
Q 000610 17 EYFCPVCRLLVYPNEALQ-SQCTHLYCKPCLTYIVN--TTQACPY--DGYLVTEADSKPLVESNKALAET 81 (1392)
Q Consensus 17 eLiCPICleVf~PkDPVQ-TsCGHtFCksCIeewLk--Ss~sCPv--CRkpIt~sdl~piL~~NkaLeKE 81 (1392)
++.|+|-+... .-|+. +.|.|.|=++=|.+.+. ....||. |...+.... +..|.+|++.
T Consensus 189 ~nrCpitl~p~--~~pils~kcnh~~e~D~I~~~lq~~~trvcp~~~Csq~~~~~~----~v~d~IlE~R 252 (275)
T COG5627 189 SNRCPITLNPD--FYPILSSKCNHKPEMDLINKKLQVECTRVCPRLICSQKEVVDP----YVCDHILEKR 252 (275)
T ss_pred cccCCcccCcc--hhHHHHhhhcccccHHHHHHHhcCCceeecchhhcchheeccc----hhhhHHHHHH
Confidence 46799988766 34555 69999999999999887 4578885 755443332 3345566544
No 234
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=20.21 E-value=25 Score=37.44 Aligned_cols=48 Identities=13% Similarity=0.396 Sum_probs=26.3
Q ss_pred CCCcccccCCcccccCCCCEE--c-CCCCcccHhhHHHHHhh-CC---CCCCCCcc
Q 000610 14 LAGEYFCPVCRLLVYPNEALQ--S-QCTHLYCKPCLTYIVNT-TQ---ACPYDGYL 62 (1392)
Q Consensus 14 LeEeLiCPICleVf~PkDPVQ--T-sCGHtFCksCIeewLkS-s~---sCPvCRkp 62 (1392)
+.++-+|-||+..-+ .|-+- | -|.-.||.+|=-+.... +. .|-.|++.
T Consensus 62 v~ddatC~IC~KTKF-ADG~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~ 116 (169)
T KOG3799|consen 62 VGDDATCGICHKTKF-ADGCGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQ 116 (169)
T ss_pred cCcCcchhhhhhccc-ccccCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHH
Confidence 567889999996542 44322 1 33344555555443332 21 56666653
No 235
>smart00531 TFIIE Transcription initiation factor IIE.
Probab=20.15 E-value=85 Score=32.98 Aligned_cols=14 Identities=36% Similarity=0.546 Sum_probs=10.1
Q ss_pred CCCCCCCccccccC
Q 000610 54 QACPYDGYLVTEAD 67 (1392)
Q Consensus 54 ~sCPvCRkpIt~sd 67 (1392)
..||.|+..+...+
T Consensus 124 f~Cp~Cg~~l~~~d 137 (147)
T smart00531 124 FTCPRCGEELEEDD 137 (147)
T ss_pred EECCCCCCEEEEcC
Confidence 57888888776544
No 236
>KOG4218 consensus Nuclear hormone receptor betaFTZ-F1 [Transcription]
Probab=20.06 E-value=65 Score=38.82 Aligned_cols=12 Identities=42% Similarity=0.678 Sum_probs=9.1
Q ss_pred CcccccCCcccc
Q 000610 16 GEYFCPVCRLLV 27 (1392)
Q Consensus 16 EeLiCPICleVf 27 (1392)
..-+|+||.+-+
T Consensus 14 l~ElCPVCGDkV 25 (475)
T KOG4218|consen 14 LGELCPVCGDKV 25 (475)
T ss_pred cccccccccCcc
Confidence 345799999866
Done!