Query 000610
Match_columns 1392
No_of_seqs 197 out of 1645
Neff 3.5
Searched_HMMs 29240
Date Tue Mar 26 15:57:38 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000610.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_384-388//hhsearch_pdb/000610hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3hcs_A TNF receptor-associated 1.0 1 1 182.9 5.9 150 1-163 5-156 (170)
2 3knv_A TNF receptor-associated 1.0 1 1 146.1 2.3 108 2-115 18-132 (141)
3 3hct_A TNF receptor-associated 1.0 1 1 137.9 7.5 103 2-115 6-109 (118)
4 1rmd_A RAG1; V(D)J recombinati 1.0 1 1 128.4 0.8 97 12-115 18-115 (116)
5 2c2l_A CHIP, carboxy terminus 1.0 1 1 102.1 6.3 67 13-85 204-271 (281)
6 4ayc_A E3 ubiquitin-protein li 1.0 1 1 99.1 2.8 69 13-85 49-117 (138)
7 2ckl_B Ubiquitin ligase protei 1.0 1 1 97.9 2.6 71 12-87 49-121 (165)
8 1z6u_A NP95-like ring finger p 1.0 1 1 97.4 3.2 70 11-85 72-142 (150)
9 2kre_A Ubiquitin conjugation f 1.0 1 1 96.3 5.4 69 12-86 24-92 (100)
10 1wgm_A Ubiquitin conjugation f 1.0 1 1 95.9 6.0 71 12-88 17-88 (98)
No 1
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=1.00 E-value=1 Score=182.91 Aligned_cols=150 Identities=23% Similarity=0.488 Sum_probs=131.5
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHH
Q ss_conf 98760000113599983201578656667997784789803586599998517-99999993322258852355579999
Q 000610 1 MGFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKPLVESNKALA 79 (1392)
Q Consensus 1 MGFD~E~IlfVesLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs-~sCPiCRkpItesel~pLlk~NklLe 79 (1392)
+||+.++ ++.++++|.|+||++++ .+|+++.|||+||+.||.+|+... ..||+||..+...++ ..+..++
T Consensus 5 ~g~~~~~---~~~~~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~----~~~~~~~ 75 (170)
T 3hcs_A 5 QGYDVEF---DPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL----FPDNFAK 75 (170)
T ss_dssp CCBCSEE---SSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC----EECHHHH
T ss_pred CCCCHHH---CCCCCCCCCCCCCCHHH--CCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHH----HHHHHHH
T ss_conf 9998210---13799988997879265--5927787898877999999997579999998657534442----3457888
Q ss_pred HHHCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCHHHCHHHHHHHHH-CCCCCCCCCCCCCCCCCCCC
Q ss_conf 87122142056689998600024687865888987876733775610300978999982-09999989999987442000
Q 000610 80 ETIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFGNSPVVCNRCAIQIVHRQVQEHAQ-NCPGVQPQASQPEGVHDAAA 158 (1392)
Q Consensus 80 KeIekLkVkCpnskeGCqesgtLsELesHlesCey~erpV~Cp~CgaqI~ReeLQeHLQ-sCPK~qVqCpqc~gt~saas 158 (1392)
+++..+.|+|+| .||.|.+.+.+++.|+..|.|. .+.|+.|+..+.+.+|..|++ .|+.+.+.|+.|........
T Consensus 76 ~~i~~l~v~C~n--~GC~~~~~~~~l~~H~~~C~~~--~v~C~~C~~~~~r~~l~~H~~~~C~~r~~~C~~C~~~~~~~~ 151 (170)
T 3hcs_A 76 REILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFA--LMDCPQCQRPFQKFHINIHILKDCPRRQVSCDNCAASMAFED 151 (170)
T ss_dssp HHHHTSEEECCS--TTCCCEEEGGGHHHHHTTCTTS--EEECTTTCCEEEGGGHHHHHHHTCTTCEEECTTTCCEEEGGG
T ss_pred HHHHHCCCCCCC--CCCCCEECHHHHHHHHHCCCCE--EEECCCCCHHHHHHHHHHHHHHHCCCCCEECCCCCCCCCHHH
T ss_conf 877402467998--7778452286799998569942--368997786888889987736128997707989997258899
Q ss_pred CCCCC
Q ss_conf 25666
Q 000610 159 IGTAA 163 (1392)
Q Consensus 159 ~s~~~ 163 (1392)
+..+.
T Consensus 152 l~~H~ 156 (170)
T 3hcs_A 152 KEIHD 156 (170)
T ss_dssp HHHHH
T ss_pred HHHHH
T ss_conf 97687
No 2
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=1.00 E-value=1 Score=146.07 Aligned_cols=108 Identities=27% Similarity=0.565 Sum_probs=90.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCC-----CHHHHH
Q ss_conf 87600001135999832015786566679977847898035865999985179-999999332225885-----235557
Q 000610 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSK-----PLVESN 75 (1392)
Q Consensus 2 GFD~E~IlfVesLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs~-sCPiCRkpItesel~-----pLlk~N 75 (1392)
||+.+++. +.++++|.|+||++++ .+|+++.|||+||+.||.+|+.... .||+||..+...+.. ..+..+
T Consensus 18 g~~~~~~~--~~l~~~~~C~IC~~~~--~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~~~l~~~~~~~d 93 (141)
T 3knv_A 18 GFSKTLLG--TKLEAKYLCSACRNVL--RRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYEEGISILESSSAFPD 93 (141)
T ss_dssp SBCGGGTG--GGCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCCTTTTEECGGGCEEC
T ss_pred CCCHHHHH--CCCCCCCCCCCCCHHH--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCHHHHCCC
T ss_conf 86055540--1688585998889143--0958889999007899999996289989998981664542122426542146
Q ss_pred HHHHHHHCCEEEECCCCCCCCCEEECCCCCCC-CCCCCCCC
Q ss_conf 99998712214205668999860002468786-58889878
Q 000610 76 KALAETIGKITVHCLFHRSGCTWQGPLSECTS-HCSGCAFG 115 (1392)
Q Consensus 76 klLeKeIekLkVkCpnskeGCqesgtLsELes-HlesCey~ 115 (1392)
..+++++..+.|+|+| .||.|.+.+.+++. |+..|...
T Consensus 94 ~~~~~~i~~L~v~Cpn--~GC~~~~~l~~l~~~H~~~~~~~ 132 (141)
T 3knv_A 94 NAARREVESLPAVCPS--DGCTWKGTLKEYESCHEGRCPLM 132 (141)
T ss_dssp HHHHHHHHTSEEECCS--TTCCCEEEHHHHHHHTTTCCHHH
T ss_pred HHHHHHHCCCCCCCCC--CCCCCEEEHHHHHHHHHHHHHHH
T ss_conf 9999997260461599--99988867899899999986887
No 3
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=1.00 E-value=1 Score=137.93 Aligned_cols=103 Identities=28% Similarity=0.613 Sum_probs=91.6
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHH
Q ss_conf 87600001135999832015786566679977847898035865999985179-99999933222588523555799998
Q 000610 2 GFDNECILNIQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSKPLVESNKALAE 80 (1392)
Q Consensus 2 GFD~E~IlfVesLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs~-sCPiCRkpItesel~pLlk~NklLeK 80 (1392)
||+.++ ++.+.+++.|+||++++ .+|+.+.|||+||..||.+|+.... .||+||..+...++ ..+..+++
T Consensus 6 g~~~~~---~~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~----~~~~~l~~ 76 (118)
T 3hct_A 6 GYDVEF---DPPLESKYECPICLMAL--REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLENQL----FPDNFAKR 76 (118)
T ss_dssp CBCSCB---SSCCCGGGBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGGGC----EECHHHHH
T ss_pred CCCHHH---CCCCCCCCCCCCCCHHH--CCEEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCHHHC----CCCHHHHH
T ss_conf 988321---23799997997589334--6908888479604999999996489988998888488862----34799999
Q ss_pred HHCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 71221420566899986000246878658889878
Q 000610 81 TIGKITVHCLFHRSGCTWQGPLSECTSHCSGCAFG 115 (1392)
Q Consensus 81 eIekLkVkCpnskeGCqesgtLsELesHlesCey~ 115 (1392)
++..+.++|.+ .||.|.+.+.+++.|+..|.+.
T Consensus 77 ~i~~l~v~C~n--~gC~~~~~~~~l~~H~~~c~~~ 109 (118)
T 3hct_A 77 EILSLMVKCPN--EGCLHKMELRHLEDHQAHCEFA 109 (118)
T ss_dssp HHHTSEEECSS--TTCCCEEEGGGSGGGTSSSCC-
T ss_pred HHCCCEEECCC--CCCCCEEEEHHHHHHHHHCHHH
T ss_conf 98066327899--9898987507999999976330
No 4
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=1.00 E-value=1 Score=128.38 Aligned_cols=97 Identities=19% Similarity=0.478 Sum_probs=84.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEECC
Q ss_conf 59998320157865666799778478980358659999851-79999999332225885235557999987122142056
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKPLVESNKALAETIGKITVHCL 90 (1392)
Q Consensus 12 esLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkS-s~sCPiCRkpItesel~pLlk~NklLeKeIekLkVkCp 90 (1392)
+.+.+++.|+||++++ .+|+.+.|||+||..||.+|+.. ...||+||..+...++. ..+..+.+.+..+.++|+
T Consensus 18 ~~~~~~~~C~IC~~~~--~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~~---~~~~~l~~~i~~l~v~C~ 92 (116)
T 1rmd_A 18 AHFVKSISCQICEHIL--ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDLE---SPVKSFLNILNSLMVKCP 92 (116)
T ss_dssp HHHHHHTBCTTTCSBC--SSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGCB---CCCHHHHHHHHHCEEECC
T ss_pred HHCCCCCCCCCCCCHH--CCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCHHHCC---CCHHHHHHHHHHHCCCCC
T ss_conf 7524799987789076--19477579884309999999948809689998877986535---649999999997308799
Q ss_pred CCCCCCCEEECCCCCCCCCCCCCCC
Q ss_conf 6899986000246878658889878
Q 000610 91 FHRSGCTWQGPLSECTSHCSGCAFG 115 (1392)
Q Consensus 91 nskeGCqesgtLsELesHlesCey~ 115 (1392)
+. ||.|.+.+.+++.|+..|.+.
T Consensus 93 ~~--gC~~~~~~~~~~~H~~~C~~~ 115 (116)
T 1rmd_A 93 AQ--DCNEEVSLEKYNHHVSSHKES 115 (116)
T ss_dssp ST--TCCCEEEHHHHHHHHHTSCCC
T ss_pred CC--CCCCHHHHHHHHHHHHHHHCC
T ss_conf 89--995332286899999873126
No 5
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=1.00 E-value=1 Score=102.09 Aligned_cols=67 Identities=13% Similarity=0.091 Sum_probs=56.7
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHC-CCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf 99983201578656667997784789803586599998517-99999993322258852355579999871221
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTT-QACPYDGYLVTEADSKPLVESNKALAETIGKI 85 (1392)
Q Consensus 13 sLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs-~sCPiCRkpItesel~pLlk~NklLeKeIekL 85 (1392)
.+.+.|+|+||+++| .+||++.|||+||+.||..|+..+ ..||+||..+...+++ .|..+++.|..+
T Consensus 204 ~~~~~~~c~i~~~~~--~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~~l~----~n~~l~~~i~~~ 271 (281)
T 2c2l_A 204 DIPDYLCGKISFELM--REPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQLI----PNLAMKEVIDAF 271 (281)
T ss_dssp CCCSTTBCTTTCSBC--SSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGGCE----ECHHHHHHHHHH
T ss_pred CCCCCCCCCCCCCHH--CCCEECCCCCEECHHHHHHHHHHCCCCCCCCCCCCCHHCCC----CCHHHHHHHHHH
T ss_conf 999661792738871--38859999897779999999987879996978999521086----169999999999
No 6
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=1.00 E-value=1 Score=99.13 Aligned_cols=69 Identities=17% Similarity=0.424 Sum_probs=54.2
Q ss_pred CCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf 9998320157865666799778478980358659999851799999993322258852355579999871221
Q 000610 13 SLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKI 85 (1392)
Q Consensus 13 sLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs~sCPiCRkpItesel~pLlk~NklLeKeIekL 85 (1392)
.+.+++.|+||++.+ .+|+.+.|||+||..||.+|+.....||+||..+..... .+..+..+++.+..+
T Consensus 49 ~~~~~~~C~iC~~~~--~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~--~~~~~~~i~~~~~~l 117 (138)
T 4ayc_A 49 VLENELQCIICSEYF--IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSKTY--SLVLDNCINKMVNNL 117 (138)
T ss_dssp HHHHHSBCTTTCSBC--SSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCEEE--CHHHHHHHHHHHTTS
T ss_pred HCCCCCCCCCCCCCC--CCCEECCCCCCCCHHHHHHHHHCCCCCCCCCCCCCCCCC--CCCHHHHHHHHHHHH
T ss_conf 561159975627232--796678899984699999999769969999982788997--541669999999981
No 7
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=1.00 E-value=1 Score=97.87 Aligned_cols=71 Identities=21% Similarity=0.560 Sum_probs=56.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEC-CCCCCCCHHHHHHHHHH-CCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEE
Q ss_conf 599983201578656667997784-78980358659999851-79999999332225885235557999987122142
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQS-QCTHLYCKPCLTYIVNT-TQACPYDGYLVTEADSKPLVESNKALAETIGKITV 87 (1392)
Q Consensus 12 esLeEELiCPICleVL~PkEPVqT-sCGHiFCksCIeelLkS-s~sCPiCRkpItesel~pLlk~NklLeKeIekLkV 87 (1392)
+.+.+++.|+||++++ .+|+.+ .|||+||..||.+|+.. ...||+||..+...+ .+..|..+++++..+..
T Consensus 49 ~~~~~~~~C~IC~~~~--~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~---~l~~~~~l~~~i~~~~~ 121 (165)
T 2ckl_B 49 RSLHSELMCPICLDML--KNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSKR---SLRPDPNFDALISKIYP 121 (165)
T ss_dssp -CCHHHHBCTTTSSBC--SSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSGG---GEEECHHHHHHHHHHC-
T ss_pred HHCCCCCCCCCCCHHH--HCCCEECCCCCHHHHHHHHHHHHHCCCCCCCCCCCCCCCC---CCCCCHHHHHHHHHHHC
T ss_conf 2079999996269276--3938848998962899999999868297999998078856---68868899999999971
No 8
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=1.00 E-value=1 Score=97.40 Aligned_cols=70 Identities=21% Similarity=0.463 Sum_probs=55.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCC-CCCCCCCCCCCCCCCCHHHHHHHHHHHHCCE
Q ss_conf 35999832015786566679977847898035865999985179-9999993322258852355579999871221
Q 000610 11 IQSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQ-ACPYDGYLVTEADSKPLVESNKALAETIGKI 85 (1392)
Q Consensus 11 VesLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs~-sCPiCRkpItesel~pLlk~NklLeKeIekL 85 (1392)
++.+.+++.|+||++++ .+|+.+.|||+||..||.+|+.... .||+||..+..... +..|..+++++..+
T Consensus 72 ~~~l~~~~~C~IC~~~~--~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~~---l~~n~~l~~lv~~~ 142 (150)
T 1z6u_A 72 LKKLEQSFMCVCCQELV--YQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQNYI---MIPNEILQTLLDLF 142 (150)
T ss_dssp HHHHHHHTBCTTTSSBC--SSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTTCC---CCBCHHHHHHHHHH
T ss_pred HHHCCCCCEEECCCHHH--CCCEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCCC---CCCCHHHHHHHHHH
T ss_conf 87074279900579042--5988828999031999999998398959998835788777---88798999999997
No 9
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=1.00 E-value=1 Score=96.29 Aligned_cols=69 Identities=13% Similarity=0.175 Sum_probs=59.0
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCCCCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEE
Q ss_conf 599983201578656667997784789803586599998517999999933222588523555799998712214
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCTHLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKIT 86 (1392)
Q Consensus 12 esLeEELiCPICleVL~PkEPVqTsCGHiFCksCIeelLkSs~sCPiCRkpItesel~pLlk~NklLeKeIekLk 86 (1392)
..++++|.|+||+++| .+||++.|||+||+.||..|+.....||.|+..+...+++ .|..|++.|..+.
T Consensus 24 ~~~p~~~~CpI~~~~m--~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I~~~~ 92 (100)
T 2kre_A 24 SDAPDEFRDPLMDTLM--TDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTESMLE----PVPELKEQIQAWM 92 (100)
T ss_dssp SSCSTTTBCTTTCSBC--SSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTTSSE----ECHHHHHHHHHHH
T ss_pred CCCCHHHCCCCCCCCC--CCCEECCCCCEECHHHHHHHHHCCCCCCCCCCCCCHHHCE----ECHHHHHHHHHHH
T ss_conf 1580760881715725--5986999999886699999997389899988988856362----8799999999999
No 10
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=1.00 E-value=1 Score=95.85 Aligned_cols=71 Identities=14% Similarity=0.213 Sum_probs=59.9
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEECCCC-CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHCCEEEE
Q ss_conf 599983201578656667997784789-80358659999851799999993322258852355579999871221420
Q 000610 12 QSLAGEYFCPVCRLLVYPNEALQSQCT-HLYCKPCLTYIVNTTQACPYDGYLVTEADSKPLVESNKALAETIGKITVH 88 (1392)
Q Consensus 12 esLeEELiCPICleVL~PkEPVqTsCG-HiFCksCIeelLkSs~sCPiCRkpItesel~pLlk~NklLeKeIekLkVk 88 (1392)
..++++|+|+||+++| .+||++.|| |+||+.||.+|+.....||+||..+...+++ .|..|++.|..+...
T Consensus 17 ~~~p~~~~CpI~~~~m--~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~~L~----pn~~Lk~~I~~~~~~ 88 (98)
T 1wgm_A 17 ADACDEFLDPIMSTLM--CDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQIR----PNTELKEKIQRWLAE 88 (98)
T ss_dssp CSCCTTTBCTTTCSBC--SSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTSE----ECHHHHHHHHHHHHH
T ss_pred HCCCHHCCCCCCCCCC--CCCEECCCCCEEECHHHHHHHHHHCCCCCCCCCCCCHHHCE----ECHHHHHHHHHHHHH
T ss_conf 1681753871725642--49869898992799899999998479898978998856334----859999999999997
Done!