BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000611
(1391 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2W2I|A Chain A, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|B Chain B, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
pdb|2W2I|C Chain C, Crystal Structure Of The Human 2-Oxoglutarate Oxygenase
Loc390245
Length = 358
Score = 85.1 bits (209), Expect = 2e-16, Method: Composition-based stats.
Identities = 36/80 (45%), Positives = 50/80 (62%)
Query: 7 QVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFN 66
++ R PD+ L V +++P+VL ENG+P + QE G F++TFP YHAGFN
Sbjct: 244 RLARELFPDISRGCEAFLRHKVALISPTVLKENGIPFNCMTQEAGEFMVTFPYGYHAGFN 303
Query: 67 FGLNCAEAVNFAPADWLPHG 86
G NCAEA+NFA W+ +G
Sbjct: 304 HGFNCAEAINFATPRWIDYG 323
>pdb|4HOO|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
pdb|4HOO|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d Apoenzyme
Length = 330
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 28 VTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 86
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 235 VALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 293
>pdb|4HON|A Chain A, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
pdb|4HON|B Chain B, Crystal Structure Of Human Jmjd2d/kdm4d In Complex With An
H3k9me3 Peptide And 2-oxoglutarate
Length = 330
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 28 VTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 86
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 235 VALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 293
>pdb|3DXU|A Chain A, The Crystal Structure Of Core Jmjd2d Complexed With Fe And
N- Oxalylglycine
Length = 337
Score = 82.4 bits (202), Expect = 2e-15, Method: Composition-based stats.
Identities = 32/59 (54%), Positives = 43/59 (72%)
Query: 28 VTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 86
V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W+ +G
Sbjct: 239 VALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRWIDYG 297
>pdb|3DXT|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2d
Length = 354
Score = 82.0 bits (201), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 33/64 (51%), Positives = 44/64 (68%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L V +++P+VL ENG+P + QE G F++TFP YHAGFN G NCAEA+NFA W
Sbjct: 241 FLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPRW 300
Query: 83 LPHG 86
+ +G
Sbjct: 301 IDYG 304
>pdb|2XML|A Chain A, Crystal Structure Of Human Jmjd2c Catalytic Domain
pdb|2XML|B Chain B, Crystal Structure Of Human Jmjd2c Catalytic Domain
Length = 348
Score = 77.4 bits (189), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 32/64 (50%), Positives = 43/64 (67%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L +T+++PSVL + G+P + QE G F+ITFP YHAGFN G NCAE+ NFA W
Sbjct: 240 FLRHKMTLISPSVLKKYGIPFDKITQEAGEFMITFPYGYHAGFNHGFNCAESTNFATVRW 299
Query: 83 LPHG 86
+ +G
Sbjct: 300 IDYG 303
>pdb|3OPT|A Chain A, Crystal Structure Of The Rph1 Catalytic Core With
A-Ketoglutarate
pdb|3OPW|A Chain A, Crystal Structure Of The Rph1 Catalytic Core
Length = 373
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 33/82 (40%), Positives = 50/82 (60%)
Query: 5 FFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAG 64
F++ M+ P+ P+ L + + +P +L ENG+ ++ G F+IT+P YHAG
Sbjct: 266 FYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAG 325
Query: 65 FNFGLNCAEAVNFAPADWLPHG 86
FN+G N AE+VNFA +WLP G
Sbjct: 326 FNYGYNLAESVNFALEEWLPIG 347
>pdb|2WWJ|A Chain A, Structure Of Jmjd2a Complexed With Inhibitor 10a
pdb|2WWJ|B Chain B, Structure Of Jmjd2a Complexed With Inhibitor 10a
Length = 348
Score = 73.6 bits (179), Expect = 7e-13, Method: Composition-based stats.
Identities = 30/59 (50%), Positives = 41/59 (69%)
Query: 28 VTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADWLPHG 86
+T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W+ +G
Sbjct: 236 MTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRWIEYG 294
>pdb|2OQ6|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ6|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys9
pdb|2OQ7|A Chain A, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OQ7|B Chain B, The Crystal Structure Of Jmjd2a Complexed With Ni And
N-Oxalylglycine
pdb|2OS2|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OS2|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Trimethylated At Lys36
pdb|2OT7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OT7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Monomethylated At Lys9
pdb|2OX0|A Chain A, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2OX0|B Chain B, Crystal Structure Of Jmjd2a Complexed With Histone H3
Peptide Dimethylated At Lys9
pdb|2VD7|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|2VD7|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
Pyridine-2,4-Dicarboxylic Acid
pdb|3NJY|A Chain A, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|3NJY|B Chain B, Crystal Structure Of Jmjd2a Complexed With 5-Carboxy-8-
Hydroxyquinoline
pdb|2YBP|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBP|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|A Chain A, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|2YBS|B Chain B, Jmjd2a Complexed With S-2-Hydroxyglutarate And Histone
H3k36me3 Peptide (30-41)
pdb|3PDQ|A Chain A, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|3PDQ|B Chain B, Crystal Structure Of Jmjd2a Complexed With Bipyridyl
Inhibitor
pdb|2YBK|A Chain A, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|2YBK|B Chain B, Jmjd2a Complexed With R-2-Hydroxyglutarate
pdb|3U4S|A Chain A, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3U4S|B Chain B, Histone Lysine Demethylase Jmjd2a In Complex With T11c
Peptide Substrate Crosslinked To N-Oxalyl-D-Cysteine
pdb|3RVH|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|3RVH|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|A Chain A, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4GD4|B Chain B, Crystal Structure Of Jmjd2a Complexed With Inhibitor
pdb|4AI9|A Chain A, Jmjd2a Complexed With Daminozide
pdb|4AI9|B Chain B, Jmjd2a Complexed With Daminozide
Length = 381
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L +T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W
Sbjct: 259 FLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRW 318
Query: 83 LPHG 86
+ +G
Sbjct: 319 IEYG 322
>pdb|2GP3|A Chain A, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP3|B Chain B, Crystal Structure Of The Catalytic Core Domain Of Jmjd2a
pdb|2GP5|A Chain A, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
pdb|2GP5|B Chain B, Crystal Structure Of Catalytic Core Domain Of Jmjd2a
Complexed With Alpha-Ketoglutarate
Length = 349
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L +T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W
Sbjct: 236 FLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRW 295
Query: 83 LPHG 86
+ +G
Sbjct: 296 IEYG 299
>pdb|2P5B|A Chain A, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2P5B|B Chain B, The Complex Structure Of Jmjd2a And Trimethylated H3k36
Peptide
pdb|2Q8C|A Chain A, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8C|B Chain B, Crystal Structure Of Jmjd2a In Ternary Complex With An
Histone H3k9me3 Peptide And 2-Oxoglutarate
pdb|2Q8D|A Chain A, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8D|B Chain B, Crystal Structure Of Jmj2d2a In Ternary Complex With
Histone H3-K36me2 And Succinate
pdb|2Q8E|A Chain A, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
pdb|2Q8E|B Chain B, Specificity And Mechanism Of Jmjd2a, A Trimethyllysine-
Specific Histone Demethylase
Length = 352
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L +T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W
Sbjct: 239 FLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRW 298
Query: 83 LPHG 86
+ +G
Sbjct: 299 IEYG 302
>pdb|2PXJ|A Chain A, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
pdb|2PXJ|B Chain B, The Complex Structure Of Jmjd2a And Monomethylated H3k36
Peptide
Length = 347
Score = 73.2 bits (178), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 42/64 (65%)
Query: 23 LLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPADW 82
L +T+++P +L + G+P V QE G F+ITFP YHAGFN G NCAE+ NFA W
Sbjct: 236 FLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRRW 295
Query: 83 LPHG 86
+ +G
Sbjct: 296 IEYG 299
>pdb|1WEM|A Chain A, Solution Structure Of Phd Domain In Death Inducer-
Obliterator 1(Dio-1)
Length = 76
Score = 53.9 bits (128), Expect = 7e-07, Method: Composition-based stats.
Identities = 25/59 (42%), Positives = 34/59 (57%), Gaps = 8/59 (13%)
Query: 1251 LYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSAP--------EIYICAACKPQAEESS 1301
LYCICR+P++ + MI C +C+EW+H DCV + A E YIC C + SS
Sbjct: 17 LYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSGPSS 75
>pdb|2FUI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Human Bptf
In Free State
pdb|2FUU|A Chain A, Nmr Solution Structure Of The Phd Domain From The Human Bptf
In Complex With H3(1-15)k4me3 Peptide
Length = 62
Score = 48.9 bits (115), Expect = 2e-05, Method: Composition-based stats.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1245 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1294
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 36.6 bits (83), Expect = 0.11, Method: Composition-based stats.
Identities = 16/59 (27%), Positives = 29/59 (49%)
Query: 986 PHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFE 1044
P GS + C+C + ++ C C++ YH +C+ + + + Y+CP CQ E
Sbjct: 2 PLGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQSTE 60
>pdb|2F6J|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6J|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me3 Bound State
pdb|2F6N|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2F6N|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The Free Form
pdb|2FSA|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|B Chain B, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
pdb|2FSA|C Chain C, Crystal Structure Of Phd Finger-Linker-Bromodomain Fragment
Of Human Bptf In The H3(1-15)k4me2 Bound State
Length = 174
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1245 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1294
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 986 PHGSVSMTLCMCCESDSKELEFLI-CSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1041
P GS + C+C ++ E +F I C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCIC-KTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|3QZV|A Chain A, Crystal Structure Of Bptf Phd-Linker-Bromo In Complex With
Histone H4k12ac Peptide
Length = 174
Score = 47.8 bits (112), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
Query: 1245 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1294
L + + LYCIC+ PYDE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 33.5 bits (75), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
Query: 986 PHGSVSMTLCMCCESDSKELEFLI-CSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1041
P GS + C+C ++ E +F I C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCIC-KTPYDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|3O70|A Chain A, Phd-Type Zinc Finger Of Human Phd Finger Protein 13
Length = 68
Score = 46.2 bits (108), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 32/54 (59%), Gaps = 2/54 (3%)
Query: 1243 KSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLL--SAPEIYICAACK 1294
++L + ++ C C KP+ + MI C +C W H+ C K+ + PE+++C C+
Sbjct: 12 ENLYFQGLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 65
>pdb|2LV9|A Chain A, Solution Nmr Structure Of The Phd Domain Of Human Mll5,
Northeast Structural Genomics Consortium Target Hr6512a
Length = 98
Score = 45.4 bits (106), Expect = 2e-04, Method: Composition-based stats.
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 2/46 (4%)
Query: 1253 CICRKPYDEKAMIACYQCDEWYHIDCVKL--LSAPEIYICAACKPQ 1296
CIC +D+ MI C +C W HIDC+ + P+ Y+C C+P+
Sbjct: 31 CICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPR 76
>pdb|2RI7|A Chain A, Crystal Structure Of Phd Finger-Linker-Bromodomain Y17e
Mutant From Human Bptf In The H3(1-9)k4me2 Bound State
Length = 174
Score = 44.3 bits (103), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 31/55 (56%), Gaps = 5/55 (9%)
Query: 1245 LRARSMLYCICRKPYDE-KAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1294
L + + LYCIC+ P DE K I C +C WYH CV +L + + Y+C C+
Sbjct: 3 LGSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
Score = 35.0 bits (79), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 15/56 (26%), Positives = 29/56 (51%)
Query: 986 PHGSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1041
P GS + C+C + + ++ C C++ YH +C+ + + + Y+CP CQ
Sbjct: 2 PLGSDTKLYCICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQ 57
>pdb|2K16|A Chain A, Solution Structure Of The Free Taf3 Phd Domain
pdb|2K17|A Chain A, Solution Structure Of The Taf3 Phd Domain In Complex With A
H3k4me3 Peptide
Length = 75
Score = 44.3 bits (103), Expect = 5e-04, Method: Composition-based stats.
Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
Query: 1255 CRKPYDEKAMIACYQCDEWYHIDCVKLLSAPE---IYICAAC 1293
C KP D MI C CD+WYH CV +++AP + C C
Sbjct: 24 CNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKC 65
>pdb|3O7A|A Chain A, Crystal Structure Of Phf13 In Complex With H3k4me3
Length = 52
Score = 43.9 bits (102), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 28/47 (59%), Gaps = 2/47 (4%)
Query: 1250 MLYCICRKPYDEKAMIACYQCDEWYHIDCVKLL--SAPEIYICAACK 1294
++ C C KP+ + MI C +C W H+ C K+ + PE+++C C+
Sbjct: 4 LVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCR 50
>pdb|3KQI|A Chain A, Crystal Structure Of Phf2 Phd Domain Complexed With H3k4me3
Peptide
Length = 75
Score = 43.5 bits (101), Expect = 7e-04, Method: Composition-based stats.
Identities = 22/56 (39%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 1251 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKL--LSAP--EIYICAACKPQAEESS 1301
+YC+CR PYD + MI C C +W+H CV + AP +IY C C+ +S+
Sbjct: 11 VYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKTHGKST 66
Score = 33.5 bits (75), Expect = 0.75, Method: Composition-based stats.
Identities = 20/64 (31%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
Query: 986 PHGSVSMTLCMC-CESDSKELEFLI-CSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYF 1043
P GS++ C C F+I C ACKD +H C+ E + + Y CP C+
Sbjct: 2 PLGSMATVPVYCVCRLPYDVTRFMIECDACKDWFHGSCVGVEEEEAPDIDIYHCPNCEKT 61
Query: 1044 ESES 1047
+S
Sbjct: 62 HGKS 65
>pdb|1WEP|A Chain A, Solution Structure Of Phd Domain In Phf8
Length = 79
Score = 41.2 bits (95), Expect = 0.004, Method: Composition-based stats.
Identities = 18/49 (36%), Positives = 27/49 (55%), Gaps = 5/49 (10%)
Query: 1251 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSAP----EIYICAACK 1294
+YC+CR+PY+ MI C C +W+H CV + +IY C C+
Sbjct: 13 VYCLCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCE 61
>pdb|3KV4|A Chain A, Structure Of Phf8 In Complex With Histone H3
Length = 447
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 5/49 (10%)
Query: 1251 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKL----LSAPEIYICAACK 1294
+YC+CR PYD + MI C C +W+H CV + + ++Y C C+
Sbjct: 6 VYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCE 54
>pdb|3KV5|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With N-Oxalylglycine
pdb|3KV5|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With N-Oxalylglycine
pdb|3KV6|A Chain A, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With Alpha-Ketoglutarate
pdb|3KV6|D Chain D, Structure Of Kiaa1718, Human Jumonji Demethylase, In Complex
With Alpha-Ketoglutarate
Length = 488
Score = 41.2 bits (95), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 5/48 (10%)
Query: 1251 LYCICRKPYD-EKAMIACYQCDEWYHIDCVKLLSAP----EIYICAAC 1293
+YC+CR+PYD + MI C C +W+H CV + ++Y C C
Sbjct: 38 VYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNC 85
>pdb|1MM3|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b With C-
Terminal Loop Replaced By Corresponding Loop From Wstf
Length = 61
Score = 34.7 bits (78), Expect = 0.35, Method: Composition-based stats.
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 4/49 (8%)
Query: 992 MTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1040
M C C+ E L C C YH+ CLRP + E + CP C
Sbjct: 9 MEFCRVCKDGG---ELLCCDTCPSSYHIHCLRPALYEVPDGE-WQCPRC 53
>pdb|1WEU|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25009
Length = 91
Score = 34.3 bits (77), Expect = 0.54, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1301
YC+C + Y E MI C D EW+H CV L + P + C C ++ SS
Sbjct: 38 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 90
>pdb|1MM2|A Chain A, Solution Structure Of The 2nd Phd Domain From Mi2b
pdb|2L75|A Chain A, Solution Structure Of Chd4-Phd2 In Complex With H3k9me3
Length = 61
Score = 33.9 bits (76), Expect = 0.59, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 22/49 (44%), Gaps = 4/49 (8%)
Query: 992 MTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYC 1040
M C C+ E L C C YH+ CL P + + E ++CP C
Sbjct: 9 MEFCRVCKDGG---ELLCCDTCPSSYHIHCLNPPLPEIPNGE-WLCPRC 53
>pdb|1WEN|A Chain A, Solution Structure Of Phd Domain In Ing1-Like Protein
Bac25079
Length = 71
Score = 33.9 bits (76), Expect = 0.73, Method: Composition-based stats.
Identities = 20/55 (36%), Positives = 27/55 (49%), Gaps = 7/55 (12%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1301
YC+C + Y E MI C D EW+H CV L + P + C C ++ SS
Sbjct: 18 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQESGPSS 70
>pdb|1SZR|C Chain C, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|D Chain D, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|A Chain A, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
pdb|1SZR|B Chain B, A Dimer Interface Mutant Of Ornithine Decarboxylase
Reveals Structure Of Gem Diamine Intermediate
Length = 425
Score = 33.5 bits (75), Expect = 0.85, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 881 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 931
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1NJJ|A Chain A, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|B Chain B, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|C Chain C, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
pdb|1NJJ|D Chain D, Crystal Structure Determination Of T. Brucei Ornithine
Decarboxylase Bound To D-ornithine And To G418
Length = 425
Score = 33.5 bits (75), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 881 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 931
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1QU4|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1QU4|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase
pdb|1F3T|A Chain A, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|B Chain B, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|C Chain C, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product.
pdb|1F3T|D Chain D, Crystal Structure Of Trypanosoma Brucei Ornithine
Decarboxylase (Odc) Complexed With Putrescine, Odc's
Reaction Product
Length = 425
Score = 33.5 bits (75), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 16/54 (29%), Positives = 28/54 (51%), Gaps = 6/54 (11%)
Query: 881 PVVIGELTSAIQKHKLWQE---QVHQFFNLKCAQQSWSLMLQLKELGEAAAFDC 931
P + +L ++KH+ W++ +V F+ +KC W ++ L LG FDC
Sbjct: 39 PFFVADLGDIVRKHETWKKCLPRVTPFYAVKC-NDDWRVLGTLAALG--TGFDC 89
>pdb|1WES|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Family, Member 1-Like
Length = 71
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 7/55 (12%)
Query: 1252 YCICRK-PYDEKAMIAC--YQCD-EWYHIDCVKLLSAPE-IYICAACKPQAEESS 1301
YC+C + Y E MI C QC EW+H CV L P+ + C C+ + SS
Sbjct: 18 YCLCNQVSYGE--MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDSGPSS 70
>pdb|2L5U|A Chain A, Structure Of The First Phd Finger (Phd1) From Chd4 (Mi2b)
Length = 61
Score = 33.1 bits (74), Expect = 1.0, Method: Composition-based stats.
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
Query: 998 CESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1041
CE + E ++C C YH+ CL P ++++ + CP+C+
Sbjct: 14 CEVCQQGGEIILCDTCPRAYHMVCLDP-DMEKAPEGKWSCPHCE 56
>pdb|2O86|A Chain A, Crystal Structure Of A Ternary Complex Of Buffalo
Lactoperoxidase With Nitrate And Iodide At 2.8 A
Resolution
Length = 595
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMSFSRLICDNTHITKVPLHAF 567
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|1X4I|A Chain A, Solution Structure Of Phd Domain In Inhibitor Of Growth
Protein 3 (Ing3)
Length = 70
Score = 32.7 bits (73), Expect = 1.3, Method: Composition-based stats.
Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAAC 1293
YCIC + Y E M+ C D EW+H CV L AP+ + C C
Sbjct: 8 YCICNQVSYGE--MVGCDNQDCPIEWFHYGCVGLTEAPKGKWYCPQC 52
>pdb|2Z5Z|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase
With Fluoride Ion At 3.5a Resolution
pdb|3FNL|A Chain A, Crystal Structure Of The Complex Of Buffalo Lactoperoxidase
With Salicylhydroxamic Acid At 2.48 A Resolution
Length = 595
Score = 32.7 bits (73), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKMSFSRLICDNTHITKVPLHAF 567
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2YQL|A Chain A, Solution Structure Of The Phd Domain In Phd Finger Protein
21a
Length = 56
Score = 32.7 bits (73), Expect = 1.4, Method: Composition-based stats.
Identities = 16/44 (36%), Positives = 20/44 (45%), Gaps = 1/44 (2%)
Query: 998 CESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQ 1041
C K + L+C C YHL CL P + +ICP CQ
Sbjct: 12 CSVCRKSGQLLMCDTCSRVYHLDCLDPP-LKTIPKGMWICPRCQ 54
>pdb|2GJM|A Chain A, Crystal Structure Of Buffalo Lactoperoxidase At 2.75a
Resolution
Length = 583
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 445 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 495
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 496 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFSFSRLICDNTHITKVPLHAF 555
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 556 QANNYPHDFVDC 567
>pdb|3ERH|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3FAQ|A Chain A, Crystal Struture Of Lactoperoxidase Complex With Cyanide
Length = 595
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKFSFSRLICDNTHITKVPLHAF 567
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2GJ1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.3a
Resolution
Length = 583
Score = 32.7 bits (73), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 445 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 495
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 496 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 555
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 556 QANNYPHDFVDC 567
>pdb|2IPS|A Chain A, Crystal Structure Of A Ternary Complex Of Bovine
Lactoperoxidase With Thiocyanate And Iodide At 3.1 A
Resolution
pdb|2NQX|A Chain A, Crystal Structure Of Bovine Lactoperoxidase With Iodide Ions
At 2.9a Resolution
Length = 595
Score = 32.3 bits (72), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 567
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|2PT3|A Chain A, Crystal Structure Of Bovine Lactoperoxidase At 2.34 A
Resolution Reveals Multiple Anion Binding Sites
pdb|2PUM|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complex With
Catechol And Iodide At 2.7 A Resolution
pdb|2QPK|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Salicylhydroxamic Acid At 2.34 A Resolution
pdb|2QQT|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Acetyl Salicylic Acid At 2.5 A Resolution
pdb|2QRB|A Chain A, Crystal Structure Of Chloride Saturated Bovine
Lactoperoxidase At 2.5 A Resolution Shows Multiple Halide
Binding Sites
pdb|3BXI|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With Its
Catalyzed Product Hypothiocyanate Ion At 2.3a Resolution
pdb|3ERI|A Chain A, First Structural Evidence Of Substrate Specificity In
Mammalian Peroxidases: Crystal Structures Of Substrate
Complexes With Lactoperoxidases From Two Different
Species
pdb|3GC1|A Chain A, Crystal Structure Of Bovine Lactoperoxidase
pdb|3GCJ|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCK|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3GCL|A Chain A, Mode Of Ligand Binding And Assignment Of Subsites In
Mammalian Peroxidases: Crystal Structure Of
Lactoperoxidase Complexes With Acetyl Salycylic Acid,
Salicylhydroxamic Acid And Benzylhydroxamic Acid
pdb|3I6N|A Chain A, Mode Of Binding Of The Tuberculosis Prodrug Isoniazid To
Peroxidases: Crystal Structure Of Bovine Lactoperoxidase
With Isoniazid At 2.7 Resolution
pdb|3KRQ|A Chain A, Crystal Structure Of The Complex Of Lactoperoxidase With A
Potent Inhibitor Amino-Triazole At 2.2a Resolution
pdb|3NYH|A Chain A, Crystal Structure Of Lactoperoxidase Complexed
Simultaneously With Thiocyanate Ion, Iodide Ion, Bromide
Ion, Chloride Ion Through The Substrate Diffusion Channel
Reveals A Preferential Queue Of The Inorganic Substrates
Towards The Distal Heme Cavity
pdb|3OGW|A Chain A, Structure Of The Complex Of Bovine Lactoperoxidase With
Indomethacin At 1.9a Resolution
pdb|3PY4|A Chain A, Crystal Structure Of Bovine Lactoperoxidase In Complex With
Paracetamol At 2.4a Resolution
pdb|3Q9K|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Phenyl Isothiocyanate At 1.7 A Resolution
pdb|3QL6|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Nimesulide At 1.7 A Resolution
pdb|3S4F|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 1h- Pyrazolo[4,3-C] Pyridine At 1.99 A Resolution
pdb|3R4X|A Chain A, Crystal Structure Of Bovine Lactoperoxidase Complexed With
Pyrazine-2- Carboxamide At 2 A Resolution
pdb|3R5O|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With 4- Allyl-2-Methoxyphenol At 2.6 A Resolution
pdb|3TGY|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Ascorbic Acid At 2.35 A Resolution
pdb|3TUW|A Chain A, Crystal Structure Of Lactoperoxidase Complexed With
Pyrazinamide At 2.2a Resolution
pdb|3UBA|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With P- Hydroxycinnamic Acid At 2.6 A Resolution
pdb|3V6Q|A Chain A, Crystal Structure Of The Complex Of Bovine Lactoperoxidase
With Carbon Monoxide At 2.0 A Resolution
pdb|4GM7|A Chain A, Structure Of Cinnamic Acid Bound Bovine Lactoperoxidase At
2.6a Resolution.
pdb|4GN6|A Chain A, Structure Of Paracetamol Bound Bovine Lactoperoxidase At
2.45a Resolution
Length = 595
Score = 32.3 bits (72), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 26/132 (19%)
Query: 1164 GLTKP-TIGQIQNYLKEGLLMNISPKDHYRQKLMELNRIGSQ---WADVAKKVVLDSGAL 1219
GL++P T+ +Q LK +L +KLM+L + W + +++ G +
Sbjct: 457 GLSQPKTLKGLQTVLKNKILA---------KKLMDLYKTPDNIDIWIGGNAEPMVERGRV 507
Query: 1220 S------LDKVFELIAEG-----ENLPVYLEKELKSLRARSMLYCICRKPYDEKAMIACY 1268
L + F+ I +G EN V+ EK+ SL+ S IC + K + +
Sbjct: 508 GPLLACLLGRQFQQIRDGDRFWWENPGVFTEKQRDSLQKVSFSRLICDNTHITKVPLHAF 567
Query: 1269 QCDEWYH--IDC 1278
Q + + H +DC
Sbjct: 568 QANNYPHDFVDC 579
>pdb|1EEP|A Chain A, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
pdb|1EEP|B Chain B, 2.4 A Resolution Crystal Structure Of Borrelia Burgdorferi
Inosine 5'- Monphosphate Dehydrogenase In Complex With A
Sulfate Ion
Length = 404
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 24/75 (32%), Positives = 35/75 (46%), Gaps = 9/75 (12%)
Query: 503 GDFTVNMPELELLKQYHSDAIFWIARLNDILVNINGRKDQHNVIDELNCILKEGASLRIQ 562
GD PE+ KQ+ + D N ++D N +LN L+ GA++ I
Sbjct: 100 GDTNEQKPEIFTAKQHLEKS--------DAYKNAEHKEDFPNACKDLNNKLRVGAAVSID 151
Query: 563 VDDLPLVEVELKKAH 577
+D + VE EL KAH
Sbjct: 152 IDTIERVE-ELVKAH 165
>pdb|2G6Q|A Chain A, Crystal Structure Of Ing2 Phd Domain In Complex With H3k4me3
Peptide
Length = 62
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 7/52 (13%)
Query: 1252 YCICRK-PYDEKAMIAC--YQCD-EWYHIDCVKLLSAPE-IYICAACKPQAE 1298
YC+C + Y E MI C QC EW+H CV L P+ + C C+ E
Sbjct: 13 YCLCNQVSYGE--MIGCDNEQCPIEWFHFSCVSLTYKPKGKWYCPKCRGDNE 62
>pdb|2NX9|A Chain A, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
pdb|2NX9|B Chain B, Crystal Structure Of The Carboxyltransferase Domain Of The
Oxaloacetate Decarboxylase Na+ Pump From Vibrio Cholerae
Length = 464
Score = 31.2 bits (69), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 35/63 (55%), Gaps = 9/63 (14%)
Query: 516 KQYH--------SDAIFWIARL-NDILVNINGRKDQHNVIDELNCILKEGASLRIQVDDL 566
K+YH SDA +A++ +L N+ + Q N +D+L+ +L+E +R ++ L
Sbjct: 279 KKYHAFEGMMKGSDARILVAQVPGGMLTNMESQLKQQNALDKLDLVLEEIPRVREELGFL 338
Query: 567 PLV 569
PLV
Sbjct: 339 PLV 341
>pdb|3CVZ|A Chain A, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|B Chain B, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|C Chain C, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
pdb|3CVZ|D Chain D, Structural Insights Into The Molecular Organization Of The
S-Layer From Clostridium Difficile
Length = 273
Score = 31.2 bits (69), Expect = 4.3, Method: Composition-based stats.
Identities = 12/42 (28%), Positives = 25/42 (59%)
Query: 1147 FALARNLWRVRVSKLLEGLTKPTIGQIQNYLKEGLLMNISPK 1188
+ + +N W+ V +L +GL +IG+I +G++ ++PK
Sbjct: 8 YTVVKNDWKKAVKQLQDGLKDNSIGKITVSFNDGVVGEVAPK 49
>pdb|2JMI|A Chain A, Nmr Solution Structure Of Phd Finger Fragment Of Yeast Yng1
Protein In Free State
pdb|2JMJ|A Chain A, Nmr Solution Structure Of The Phd Domain From The Yeast Yng1
Protein In Complex With H3(1-9)k4me3 Peptide
Length = 90
Score = 31.2 bits (69), Expect = 4.6, Method: Composition-based stats.
Identities = 21/56 (37%), Positives = 26/56 (46%), Gaps = 6/56 (10%)
Query: 1251 LYCICRKPYDEKAMIACYQ--CD-EWYHIDCVKLLSAP--EIYICAACKPQAEESS 1301
+YC CR M+AC C EW+H CV L AP + Y CK A + S
Sbjct: 27 VYCFCRN-VSYGPMVACDNPACPFEWFHYGCVGLKQAPKGKWYCSKDCKEIANQRS 81
>pdb|1WEW|A Chain A, Solution Structure Of Phd Domain In Dna-Binding Family
Protein Aam98074
Length = 78
Score = 30.8 bits (68), Expect = 5.1, Method: Composition-based stats.
Identities = 17/59 (28%), Positives = 25/59 (42%), Gaps = 10/59 (16%)
Query: 1253 CICRKPYDEKAMIACY--QCDEWYHIDCVKLLSA--------PEIYICAACKPQAEESS 1301
C+C + +MI C +C W H+ CV L PE + C C+ + SS
Sbjct: 19 CVCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTSGPSS 77
>pdb|2YSM|A Chain A, Solution Structure Of The First And Second Phd Domain From
MyeloidLYMPHOID OR MIXED-Lineage Leukemia Protein 3
Homolog
Length = 111
Score = 30.8 bits (68), Expect = 6.3, Method: Composition-based stats.
Identities = 10/31 (32%), Positives = 17/31 (54%)
Query: 994 LCMCCESDSKELEFLICSACKDCYHLQCLRP 1024
+C C+ ++ + L+C C YH CL+P
Sbjct: 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQP 86
>pdb|2VNF|A Chain A, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
pdb|2VNF|C Chain C, Molecular Basis Of Histone H3k4me3 Recognition By Ing4
Length = 60
Score = 30.4 bits (67), Expect = 6.7, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQ 1296
YC+C + Y E MI C D EW+H CV L + P + C C +
Sbjct: 12 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 59
>pdb|3C6W|A Chain A, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
pdb|3C6W|C Chain C, Crystal Structure Of The Ing5 Phd Finger In Complex With
H3k4me3 Peptide
Length = 59
Score = 30.4 bits (67), Expect = 6.8, Method: Composition-based stats.
Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 7/47 (14%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAAC 1293
YC+C + Y E MI C D EW+H CV L + P+ + C C
Sbjct: 11 YCLCHQVSYGE--MIGCDNPDCPIEWFHFACVDLTTKPKGKWFCPRC 55
>pdb|1WEE|A Chain A, Solution Structure Of Phd Domain In Phd Finger Family
Protein
Length = 72
Score = 30.4 bits (67), Expect = 6.9, Method: Composition-based stats.
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Query: 1253 CIC-RKPYDEKAMIACYQCDEWYHIDCVKLLSA---PEIYICAAC 1293
C C K D + M+AC C W+H C+ + +A P ++C C
Sbjct: 19 CKCGTKDDDGERMLACDGCGVWHHTRCIGINNADALPSKFLCFRC 63
>pdb|2PNX|A Chain A, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
pdb|2PNX|C Chain C, The Phd Finger Of Ing4 In Complex With An H3k4me3 Histone
Peptide
Length = 55
Score = 30.4 bits (67), Expect = 7.5, Method: Composition-based stats.
Identities = 18/50 (36%), Positives = 24/50 (48%), Gaps = 7/50 (14%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQ 1296
YC+C + Y E MI C D EW+H CV L + P + C C +
Sbjct: 7 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQE 54
>pdb|2K1J|A Chain A, Plan Homeodomain Finger Of Tumour Supressor Ing4
Length = 63
Score = 30.4 bits (67), Expect = 7.9, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEE 1299
YC+C + Y E MI C D EW+H CV L + P + C C + ++
Sbjct: 12 YCLCHQVSYGE--MIGCDNPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKK 62
>pdb|2M1R|A Chain A, Phd Domain Of Ing4 N214d Mutant
Length = 63
Score = 30.0 bits (66), Expect = 8.6, Method: Composition-based stats.
Identities = 18/53 (33%), Positives = 26/53 (49%), Gaps = 7/53 (13%)
Query: 1252 YCICRK-PYDEKAMIACYQCD---EWYHIDCVKLLSAPE-IYICAACKPQAEE 1299
YC+C + Y E MI C D EW+H CV L + P + C C + ++
Sbjct: 12 YCLCHQVSYGE--MIGCDDPDCSIEWFHFACVGLTTKPRGKWFCPRCSQERKK 62
>pdb|2RO1|A Chain A, Nmr Solution Structures Of Human Kap1 Phd Finger-Bromodomain
Length = 189
Score = 30.0 bits (66), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 8/65 (12%)
Query: 1254 ICRKPYDEKAMIACYQCDEWYHIDC--VKLLSAP-EIYICAACK--PQAEESSTPQNVDG 1308
+C+KP D ++ C QC+ +H+DC L P E + C+ C P +E ++DG
Sbjct: 7 VCQKPGD---LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDLKEEDGSLSLDG 63
Query: 1309 GRTNA 1313
+
Sbjct: 64 ADSTG 68
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.135 0.407
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,956,497
Number of Sequences: 62578
Number of extensions: 1545270
Number of successful extensions: 3740
Number of sequences better than 100.0: 71
Number of HSP's better than 100.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3668
Number of HSP's gapped (non-prelim): 98
length of query: 1391
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1280
effective length of database: 8,027,179
effective search space: 10274789120
effective search space used: 10274789120
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)