Query 000611
Match_columns 1391
No_of_seqs 563 out of 1702
Neff 6.5
Searched_HMMs 29240
Date Tue Mar 26 16:32:43 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000611.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_384-388//hhsearch_pdb/000611hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3avr_A Lysine-specific demethy 1.0 1 1 256.4 14.1 210 2-228 304-522 (531)
2 2ox0_A JMJC domain-containing 1.0 1 1 238.0 4.2 110 2-112 238-347 (381)
3 3dxt_A JMJC domain-containing 1.0 1 1 233.9 2.9 110 2-112 220-329 (354)
4 3opt_A DNA damage-responsive t 1.0 1 1 230.4 5.6 90 2-91 263-352 (373)
5 4ask_A Lysine-specific demethy 1.0 1 1 199.4 15.3 211 2-228 279-497 (510)
6 2xxz_A Lysine-specific demethy 1.0 1 1 162.6 5.3 86 2-96 245-330 (332)
7 3kv4_A PHD finger protein 8; e 1.0 1 1 119.5 -2.8 61 991-1051 4-64 (447)
8 3kv5_D JMJC domain-containing 1.0 1 1 117.1 1.1 63 988-1050 33-95 (488)
9 3o70_A PHD finger protein 13; 1.0 1 1 109.0 1.4 58 1239-1296 8-67 (68)
10 1wem_A Death associated transc 1.0 1 1 107.8 -2.0 53 1246-1298 12-72 (76)
No 1
>3avr_A Lysine-specific demethylase 6A; cupin superfamily, TRI/dimethyllysine demethylase, oxidoredu structural protein complex; HET: M3L OGA EDO; 1.80A {Homo sapiens} PDB: 3avs_A*
Probab=1.00 E-value=1 Score=256.36 Aligned_cols=210 Identities=18% Similarity=0.153 Sum_probs=167.7
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
+.+||++|++.-+ +++ +..++.+|+.|.++|||||+++|+||+||||||+|||+|||+|||++||+|||+++
T Consensus 304 ~~k~e~l~~k~~~-------~~~-~~~~~~~p~~L~~~gIPvyr~vQkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~ 375 (531)
T 3avr_A 304 WGVLNDFCEKNNL-------NFL-MGSWWPNLEDLYEANVPVYRFIQRPGDLVWINAGTVHWVQAIGWCNNIAWNVGPLT 375 (531)
T ss_dssp HHHHHHHHHHTTC-------CTT-TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCSS
T ss_pred HHHHHHHHHHCCC-------CHH-HCEEECCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCC
T ss_conf 9999999997398-------721-14430688999867997599997789889989984378874534546578705686
Q ss_pred CCCCCHHHHHHHHHH---CCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCC
Q ss_conf 634510226899872---2667899699999984103--79880578999999999999999999986086432357999
Q 000611 82 WLPHGGFGADLYQQY---HKAAVLSHEELLCVVAKSD--LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPR 156 (1391)
Q Consensus 82 Wl~~g~~~~~~y~~~---~r~~vfsheeLl~~~a~~~--~~~~~~~~l~~~l~~~~~~E~~~R~~l~~~gi~~~~~~~~~ 156 (1391)
|++++. ++++|+.. +..++|++++|++++|..- .|..+...+...|.+.+.....+|+.+.+.|+.. . ...+
T Consensus 376 ~~q~~~-A~e~y~~Nk~~~~~sivp~~~L~wn~a~~~~~~d~~l~~~ik~~L~rsl~~~~~~~~~l~~~g~~i-~-~~~~ 452 (531)
T 3avr_A 376 ACQYKL-AVERYEWNKLQSVKSIVPMVHLSWNMARNIKVSDPKLFEMIKYCLLRTLKQCQTLREALIAAGKEI-I-WHGR 452 (531)
T ss_dssp HHHHHH-HHHHHHHHHHHTCCCSSCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCE-E-ECCC
T ss_pred HHHHHH-HHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEE-E-ECCC
T ss_conf 677999-999999864405788788899999988655026699999999999999999999999998679778-7-6465
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC----CCCEEECCCHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 8998878877532333464431100226646----99214322412240597996189996599999999999720
Q 000611 157 KCPEYVGTEEDPTCIICRQYLYLSAVACRCR----PAAFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 228 (1391)
Q Consensus 157 ~~~~~~~~~~~~~C~~Ck~~~flS~v~C~c~----~~~~~CL~H~~~lc~C~~~~~~l~yRy~~~eL~~l~~~l~~ 228 (1391)
...++.+.|..|++.||.+.++|..+ ...+.|++|+...+.| .++.+++|||+++||..+.+++..
T Consensus 453 -----~~~~~~~~C~~C~~~lFn~~~v~~~~~~~~~~~v~C~~Ca~~~~~~-l~~~~v~~ry~~eeL~~~yd~f~~ 522 (531)
T 3avr_A 453 -----TKEEPAHYCSICEVEVFDLLFVTNESNSRKTYIVHCQDCARKTSGN-LENFVVLEQYKMEDLMQVYDQFTL 522 (531)
T ss_dssp -----CTTCCCEECTTTCCEECSEEEEEECTTCSSEEEEECHHHHHHHCTT-CTTCEEEECSCHHHHHHHHHTCCC
T ss_pred -----CCCCCCEECCCCCHHHEEEEEEEECCCCCCCCCCCCHHHHHHCCCC-CCCEEEEEECCHHHHHHHHHHEEE
T ss_conf -----6788881622261121211778725777787883986446304835-045489997589999999975473
No 2
>2ox0_A JMJC domain-containing histone demethylation PROT; double-stranded beta helix, demethylase, oxygenase, SGC, STR genomics, structural genomics consortium, oxidoreductase; HET: MLY ALY OGA; 1.95A {Homo sapiens} PDB: 2oq7_A* 2os2_A* 2ot7_A* 2oq6_A* 2vd7_A* 2ybk_A* 2ybp_A* 2ybs_A* 3njy_A* 3pdq_A* 3u4s_A* 2p5b_A* 2q8c_A* 2q8d_A* 2q8e_A* 2gp5_A* 2gp3_A* 2wwj_A* 2pxj_A* 2xml_A*
Probab=1.00 E-value=1 Score=238.02 Aligned_cols=110 Identities=30% Similarity=0.516 Sum_probs=98.0
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
|++||++|++.+|++|.+||++|+|++++++|+.|.++|||||+++|+|||||||||+|||+|||+||||+||||||+++
T Consensus 238 ~~kfE~l~~~~~P~~~~~~~~~L~h~~~~isP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~GfN~aEAvNFA~~~ 317 (381)
T 2ox0_A 238 GKRLERLAKGFFPGSAQSCEAFLRHKMTLISPLMLKKYGIPFDKVTQEAGEFMITFPYGYHAGFNHGFNCAESTNFATRR 317 (381)
T ss_dssp HHHHHHHHHHHSHHHHHHCTTGGGGSCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEECSSEEEEEEEECCTT
T ss_pred HHHHHHHHHHHCHHHHHCCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEECCCCCHHHHHCCCCHH
T ss_conf 99999999986735442055776355404599999877996489875699889988873787642762387775247377
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 6345102268998722667899699999984
Q 000611 82 WLPHGGFGADLYQQYHKAAVLSHEELLCVVA 112 (1391)
Q Consensus 82 Wl~~g~~~~~~y~~~~r~~vfsheeLl~~~a 112 (1391)
|+++|..+.+.+... ..-.++++.++.++-
T Consensus 318 Wl~~g~~a~~c~c~~-~~v~i~~d~~~~~~~ 347 (381)
T 2ox0_A 318 WIEYGKQAVLCSCRK-DMVKISMDVFVRKFQ 347 (381)
T ss_dssp HHHHHHHCCCCCSST-TCCCCCCHHHHHHHC
T ss_pred HHHHHHHHHHCCCCC-CCEEECHHHHHHHHC
T ss_conf 888767665255657-731314999998738
No 3
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone demethylase, H3K9, jumonji domain-CONT protein 2D, oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A* 4hon_A* 4hoo_A 2w2i_A*
Probab=1.00 E-value=1 Score=233.90 Aligned_cols=110 Identities=33% Similarity=0.623 Sum_probs=97.4
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
+++||++|++.+|+++..|++||+|++++++|+.|.++|||||+++|+|||||||||++||+|||+||||+||||||+++
T Consensus 220 ~~kfE~l~k~~~p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~~~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~ 299 (354)
T 3dxt_A 220 GQRLERLARELFPGSSRGCGAFLRHKVALISPTVLKENGIPFNRITQEAGEFMVTFPYGYHAGFNHGFNCAEAINFATPR 299 (354)
T ss_dssp HHHHHHHHHHHSHHHHHHCTTGGGGCCEEECHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECCGG
T ss_pred HHHHHHHHHHHCCHHHHHCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHH
T ss_conf 99999999986721221057887367544799999877996189886799589988873677763651476754558677
Q ss_pred CCCCCHHHHHHHHHHCCCCCCCHHHHHHHHH
Q ss_conf 6345102268998722667899699999984
Q 000611 82 WLPHGGFGADLYQQYHKAAVLSHEELLCVVA 112 (1391)
Q Consensus 82 Wl~~g~~~~~~y~~~~r~~vfsheeLl~~~a 112 (1391)
||++|..|.+-... .....||+|.++..+-
T Consensus 300 Wl~~g~~A~~C~C~-~~~v~i~~d~~~~~~~ 329 (354)
T 3dxt_A 300 WIDYGKMASQCSCG-EARVTFSMDAFVRILQ 329 (354)
T ss_dssp GHHHHHHCCCCCSS-SCCCCHHHHHHHHHHC
T ss_pred HHHHHHHCCCCCCC-CCCCEECHHHHHHHHC
T ss_conf 88762304036355-7663363999988638
No 4
>3opt_A DNA damage-responsive transcriptional repressor R; RPH1, histone demethylase, catalytic core, oxidoreductase; HET: DNA AKG; 2.20A {Saccharomyces cerevisiae} PDB: 3opw_A*
Probab=1.00 E-value=1 Score=230.43 Aligned_cols=90 Identities=37% Similarity=0.738 Sum_probs=87.7
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
|++||++|++.+|++|.+||++|+|++++++|+.|.++||||++++|+|||||||||+|||+|||+||||+||||||+++
T Consensus 263 ~~kfE~l~k~~~p~~~~~c~~fL~h~~~lisP~~L~~~GIpv~r~vQ~pGEfViTfP~aYH~gfn~Gfn~aEAvNFA~~~ 342 (373)
T 3opt_A 263 RFKFYKFMQEQFPEEAKNCPEFLRHKMFLASPKLLQENGIRCNEIVHHEGEFMITYPYGYHAGFNYGYNLAESVNFALEE 342 (373)
T ss_dssp HHHHHHHHHHSSHHHHSSCSSCTTTSCEEECHHHHHTTTCCCEEEEECTTCEEEECTTCCEEEEESSSEEEEEEEECCC-
T ss_pred HHHHHHHHHHHCHHHHHHCHHHHHCCCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCCCHHHHHCCCCHH
T ss_conf 99999999986715443077886177555899999866996289887799789987883588986672298887448377
Q ss_pred CCCCCHHHHH
Q ss_conf 6345102268
Q 000611 82 WLPHGGFGAD 91 (1391)
Q Consensus 82 Wl~~g~~~~~ 91 (1391)
||++|..|..
T Consensus 343 Wl~~g~~a~~ 352 (373)
T 3opt_A 343 WLPIGKKAGK 352 (373)
T ss_dssp ----------
T ss_pred HHHHHCCCCC
T ss_conf 7876251765
No 5
>4ask_A Lysine-specific demethylase 6B; oxidoreductase, KDM6B, GSK-J1, inhibitor, lysine specific HI demethylase; HET: K0I; 1.86A {Homo sapiens} PDB: 2xue_A* 4eyu_A* 4ez4_A* 4ezh_A*
Probab=1.00 E-value=1 Score=199.44 Aligned_cols=211 Identities=16% Similarity=0.068 Sum_probs=161.3
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
+.+||++|++..+ |+++ ...+.+|+.|.++|||||+++|+|||||||||++||.|||+||++++|+||||++
T Consensus 279 ~~k~e~l~~k~~~-------d~l~-~~~~pspe~L~kagIPvyr~iQkPGdfVit~PgtyH~Vqs~Gf~~niaWNvap~t 350 (510)
T 4ask_A 279 WETISAFCDRHGV-------DYLT-GSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLT 350 (510)
T ss_dssp HHHHHHHHHHTTC-------CTTT-SCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEECBSS
T ss_pred HHHHHHHHHHHCC-------CHHH-CCCCCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCC
T ss_conf 9999999987481-------2565-1515899999758997699998899889989982478986670014678735898
Q ss_pred CC--CCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 63--45102268998722667899699999984103--798805789999999999999999999860864323579998
Q 000611 82 WL--PHGGFGADLYQQYHKAAVLSHEELLCVVAKSD--LDSKVSPYLKRELLRVYTKERMWRERLWRKGIIKSTPMGPRK 157 (1391)
Q Consensus 82 Wl--~~g~~~~~~y~~~~r~~vfsheeLl~~~a~~~--~~~~~~~~l~~~l~~~~~~E~~~R~~l~~~gi~~~~~~~~~~ 157 (1391)
|. ..+.++.++|+..+..++|++++|+++||..- .|.++...++..|.+-...-...++.+...|..-. ...+.
T Consensus 351 ~~qlqlA~e~y~~n~~~~~~SivPm~~L~Wn~Ar~~k~~d~~l~~liK~~L~rSL~~~~~~~d~~~~~g~~i~--~~~~~ 428 (510)
T 4ask_A 351 AYQYQLALERYEWNEVKNVKSIVPMIHVSWNVARTVKISDPDLFKMIKFCLLQSMKHCQVQRESLVRAGKKIA--YQGRV 428 (510)
T ss_dssp HHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEE--ECCCC
T ss_pred HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEE--ECCCC
T ss_conf 8999999999999998496863575999999875210159899999999999999999999999986797886--55868
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CC--CEEECCCHHHHCCCCCCCEEEEEECCHHHHHHHHHHHHC
Q ss_conf 998878877532333464431100226646--99--214322412240597996189996599999999999720
Q 000611 158 CPEYVGTEEDPTCIICRQYLYLSAVACRCR--PA--AFVCLEHWEHLCECKTRKLHLLYRHTLAELYDLFLTVDR 228 (1391)
Q Consensus 158 ~~~~~~~~~~~~C~~Ck~~~flS~v~C~c~--~~--~~~CL~H~~~lc~C~~~~~~l~yRy~~~eL~~l~~~l~~ 228 (1391)
.++....|..|..-.|-=-.+-..+ ++ .+.|+.++..... .-.+.+.+++|++++|..+...+..
T Consensus 429 -----~~~~~~~C~~C~~evFn~l~v~~~~~~~~~~~v~C~~Ca~~~~~-~~~~~~vl~~y~~~~L~~iyD~f~l 497 (510)
T 4ask_A 429 -----KDEPAYYCNECDVEVFNILFVTSENGSRNTYLVHCEGCARRRSA-GLQGVVVLEQYRTEELAQAYDAFTL 497 (510)
T ss_dssp -----TTCCCEECTTTCCEECSEEEEEECC----CEEEECHHHHHHSTT-TTTTCEEEESSCHHHHHHHHHHCCC
T ss_pred -----CCCCCCCCCCCCEEEEEEEEEEECCCCCCCCCEECHHHHHHCCC-CCCEEEEEEECCHHHHHHHHHCEEE
T ss_conf -----88766666899847788899970378877533388675411378-7654899997219999998747284
No 6
>2xxz_A Lysine-specific demethylase 6B; oxidoreductase, histone demethylation, oxygenase, chromatin modification; HET: 8XQ; 1.80A {Homo sapiens}
Probab=1.00 E-value=1 Score=162.60 Aligned_cols=86 Identities=17% Similarity=0.090 Sum_probs=76.4
Q ss_pred CHHHHHHHHHHCCHHHHCCCCCCCCCCEEECHHHHHHCCCCEEEEECCCCCEEEECCCCCCCCCCCCCCHHHHCCCCCCC
Q ss_conf 11899999951921331291000253300092447637984154103898289953886444445663100002368988
Q 000611 2 STFFFQVMRSSLPDLFDAQPDLLFQLVTMLNPSVLVENGVPVYSVLQEPGNFVITFPRSYHAGFNFGLNCAEAVNFAPAD 81 (1391)
Q Consensus 2 a~~fe~~~~~~~p~~~~~~p~~l~~~~~~~~P~~L~~~gv~v~~~~Q~~gefvitfP~ayh~gfn~Gfn~~Eavnfa~~~ 81 (1391)
+.+||++|++.-++++ +..++++|..|.++||||||++|+||+||||||+|||+|||+|||++||+||||++
T Consensus 245 ~~~~e~l~~k~~~d~~--------~~~~~~~p~~L~~~gIPvyr~~QkpGd~Vi~~PgayH~v~n~G~~~n~awN~a~~~ 316 (332)
T 2xxz_A 245 WETISAFCDRHGVDYL--------TGSWWPILDDLYASNIPVYRFVQRPGDLVWINAGTVHWVQATGWCNNIAWNVGPLT 316 (332)
T ss_dssp HHHHHHHHHHTTCCTT--------TSCBCCCHHHHHHTTCCCEEEEECTTCEEEECTTCEEEEEESSSEEEEEEEEESCT
T ss_pred HHHHHHHHHHCCCCHH--------HCEECCCHHHHHHCCCCEEEEEECCCCEEEECCCCEEEEEECCEEEEEEEEECCCC
T ss_conf 9999999986497632--------15021789999768997599997799889989985277874541247779717886
Q ss_pred CCCCCHHHHHHHHHH
Q ss_conf 634510226899872
Q 000611 82 WLPHGGFGADLYQQY 96 (1391)
Q Consensus 82 Wl~~g~~~~~~y~~~ 96 (1391)
|+.+ ..|+++|+-.
T Consensus 317 ~~q~-~~a~erye~n 330 (332)
T 2xxz_A 317 AYQY-QLALERYEWN 330 (332)
T ss_dssp TGGG-GGC-------
T ss_pred HHHH-HHHHHHHHHH
T ss_conf 7899-9999998761
No 7
>3kv4_A PHD finger protein 8; epigenetics, histone CODE, covalent histone modifications, jumonji demethylase, mental retardation, metal-binding, zinc; HET: M3L MLY OGA; 2.19A {Homo sapiens}
Probab=1.00 E-value=1 Score=119.47 Aligned_cols=61 Identities=21% Similarity=0.530 Sum_probs=46.7
Q ss_pred CCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 6643443468876753265032222334576776622458997521687644444311114
Q 000611 991 SMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQF 1051 (1391)
Q Consensus 991 ~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~Cp~C~~~~~~~~~~~ 1051 (1391)
...+|+|-+.++++.+||+||.|++|||+.|||++...+...+.|+||.|.........+.
T Consensus 4 ~~~yCiC~~~~d~~~~MIqCD~C~~WfH~~CVgi~~~~~~~~~~y~C~~C~~~~~~~~~k~ 64 (447)
T 3kv4_A 4 VPVYCLCRLPYDVTRFMIECDMCQDWFHGSCVGVEEEKAADIDLYHCPNCEVLHGPSIMKK 64 (447)
T ss_dssp CCEETTTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTEEECCCHHHHHHHCCCEECC
T ss_pred CCEEEECCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCHHCC
T ss_conf 7859867993799997587678886414013786701004799899989866347720011
No 8
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=1.00 E-value=1 Score=117.14 Aligned_cols=63 Identities=22% Similarity=0.529 Sum_probs=47.9
Q ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 986664344346887675326503222233457677662245899752168764444431111
Q 000611 988 GSVSMTLCMCCESDSKELEFLICSACKDCYHLQCLRPTEVDRNHAEAYICPYCQYFESESVSQ 1050 (1391)
Q Consensus 988 ~~~~~~~C~~C~~~~~~~~~i~Cd~C~~~YH~~Cv~~~~~~~~~~~~w~Cp~C~~~~~~~~~~ 1050 (1391)
......+|+|.+.++.+.+||+||.|++|||+.|||++.......+.|+|+.|......+..+
T Consensus 33 ~~~~~~yC~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~~~~~k 95 (488)
T 3kv5_D 33 PPPPPVYCVCRQPYDVNRFMIECDICKDWFHGSCVGVEEHHAVDIDLYHCPNCAVLHGSSLMK 95 (488)
T ss_dssp CCCCCEETTTTEECCTTSCEEEBTTTCCEEEHHHHTCCGGGGGGEEEBCCHHHHHHHCSCEEC
T ss_pred CCCCCEEEECCCCCCCCCCEEECCCCCCCEEEEECCCCCCCCCCCCEEECCCCCCCCCCCHHC
T ss_conf 788874876799679998768746888756421067574434688879889986776850200
No 9
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=1.00 E-value=1 Score=109.02 Aligned_cols=58 Identities=29% Similarity=0.933 Sum_probs=49.6
Q ss_pred HHHHHHCCCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCC--CCCEECCCCCCC
Q ss_conf 5664211599823888355889988165158998136223566678--991462898788
Q 000611 1239 EKELKSLRARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--PEIYICAACKPQ 1296 (1391)
Q Consensus 1239 ~~e~~~~~~~~~~yC~C~~~~~~~~Mi~Cd~C~~W~H~~Cvg~~~~--~~~~~C~~C~~~ 1296 (1391)
+.+.+...+.+.+||+|++|+++++|||||.|++|||+.|||++.. ++.|+|+.|..+
T Consensus 8 ~~~~~~~~~~~~~~CiC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~s 67 (68)
T 3o70_A 8 SSGRENLYFQGLVTCFCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRDS 67 (68)
T ss_dssp ------CTTTTCCCSTTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHTC
T ss_pred CCCCCCCCCCCCEEEECCCCCCCCCEEECCCCCCCCCCCCCCCCCCCCCCCEECCCCCCC
T ss_conf 865455789986586799957998878889888525314368676569985899788888
No 10
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=1.00 E-value=1 Score=107.83 Aligned_cols=53 Identities=43% Similarity=1.003 Sum_probs=45.7
Q ss_pred CCCCCEEEEECCCCCCCCEEEECCCCCEEECCCCCCCCC--------CCCEECCCCCCCCC
Q ss_conf 599823888355889988165158998136223566678--------99146289878877
Q 000611 1246 RARSMLYCICRKPYDEKAMIACYQCDEWYHIDCVKLLSA--------PEIYICAACKPQAE 1298 (1391)
Q Consensus 1246 ~~~~~~yC~C~~~~~~~~Mi~Cd~C~~W~H~~Cvg~~~~--------~~~~~C~~C~~~~~ 1298 (1391)
.|.+.+||+|++|+++++|||||.|++|||+.|||++.. ++.|+|+.|.....
T Consensus 12 ~d~~~~~C~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~~ 72 (76)
T 1wem_A 12 YDPNALYCICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTILSG 72 (76)
T ss_dssp CCTTCCCSTTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHSC
T ss_pred CCCCCCEEECCCCCCCCCEEEECCCCCCEECEEECCCHHHHHHCCCCCCEEECCCCCCCCC
T ss_conf 5898788778981699777883899984857687524055443348999599968768567
Done!