Query 000612
Match_columns 1391
No_of_seqs 530 out of 5200
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 17:11:13 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000612.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_384-388//hhsearch_pdb/000612hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 700.0 47.3 839 78-1102 379-1304(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 625.6 56.3 844 78-1093 351-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 457.4 30.7 436 166-1095 106-560 (607)
4 2iw3_A Elongation factor 3A; a 1.0 1 1 452.9 40.5 184 165-413 448-634 (986)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 450.1 30.5 436 166-1095 36-490 (538)
6 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 441.6 26.7 216 855-1107 269-486 (538)
7 3ux8_A Excinuclease ABC, A sub 1.0 1 1 441.1 36.8 214 165-413 31-297 (670)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 430.4 29.6 201 882-1107 361-568 (608)
9 4f4c_A Multidrug resistance pr 1.0 1 1 372.2 14.5 214 853-1093 413-636 (1321)
10 4a82_A Cystic fibrosis transme 1.0 1 1 339.4 18.2 213 853-1093 337-559 (578)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=699.99 Aligned_cols=839 Identities=19% Similarity=0.250 Sum_probs=429.5
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCC--CCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 676688999854305667699999999877521999--995159992049999982587767872688889999997676
Q 000612 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVGID--LPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1391)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1391)
.+++.+..+|+.++++..++ +.+.. ..+.+ ....+|+|+|++|.|+.
T Consensus 379 ~~~~~~s~~ri~~~l~~~~~-----~~~~~-~~~~~~~~~~g~I~~~nvsF~Y~~------------------------- 427 (1321)
T 4f4c_A 379 LGTAQGAASGIYEVLDRKPV-----IDSSS-KAGRKDMKIKGDITVENVHFTYPS------------------------- 427 (1321)
T ss_dssp HHHHHHHHHHHHHHTTTSCC-----SSCSS-SCCCCCCCCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCCC-CCCCCCCCCCCCEEEEEEEEECCC-------------------------
T ss_conf 99999999999999717853-----45666-556567788876799985540799-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCC---CEEEEEC
Q ss_conf 4057865542464241577848929999769999389999999469899998121999969347986765---2199983
Q 000612 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQ---RTAAYIS 232 (1391)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~---~~~~yv~ 232 (1391)
+ +..++|+|+|+.++||++++|+||+|||||||+++|.|.++|. +|+|.+||+++++.... +.++||+
T Consensus 428 -----~-~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~ 498 (1321)
T 4f4c_A 428 -----R-PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVS 498 (1321)
T ss_dssp -----S-TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEEC
T ss_pred -----C-CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCC
T ss_conf -----9-9874333318862288278998058985778888754565164---486157996501125999850466658
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78988999999999998656127873145669989999862999998867999998522244779999999990995435
Q 000612 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1391)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1391)
|+ .++++.|||||+.|+. +...++.+.++++..... | .+..|+++.
T Consensus 499 Q~-~~Lf~~TI~eNI~~g~----~~~~~~~v~~a~~~a~l~--------------------------~---~i~~lp~G~ 544 (1321)
T 4f4c_A 499 QE-PALFNCTIEENISLGK----EGITREEMVAACKMANAE--------------------------K---FIKTLPNGY 544 (1321)
T ss_dssp SS-CCCCSEEHHHHHHTTC----TTCCHHHHHHHHHHTTCH--------------------------H---HHHHSTTTT
T ss_pred CC-CEEECCCHHHHHHHHC----CCCHHHHHHHHHHHCCCH--------------------------H---HHHCCCCCC
T ss_conf 75-3320786167886415----522099999999875654--------------------------6---887088888
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHC
Q ss_conf 54334644556874456689999997339853422359989999979999999999867039869999825900388413
Q 000612 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1391)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~f 392 (1391)
||.||+++.. ||||||||++||||++.+|+|++||||||+||+.++..+.++|+++. .++|+|+..| +.++...+
T Consensus 545 ~T~vGe~G~~-LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~--~~~T~iiiaH--rls~i~~a 619 (1321)
T 4f4c_A 545 NTLVGDRGTQ-LSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA--KGRTTIIIAH--RLSTIRNA 619 (1321)
T ss_dssp SSEESSSSCC-CCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH--TTSEEEEECS--CTTTTTTC
T ss_pred CCEECCCCCC-CCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH--CCCEEEEECC--CHHHHHHC
T ss_conf 6075589887-77778799999998725999899845544688789999999999984--7988999736--38789868
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHH--HCCCHHHHHHHH-HCCCCC-----CC-------C
Q ss_conf 7099973973998539667999998369989999996-789987--108222456552-028998-----66-------7
Q 000612 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQE--VTSRKDQRQYWA-HKEKPY-----RF-------V 456 (1391)
Q Consensus 393 D~i~lL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~e--v~s~~~~~~~~~-~~~~~~-----~~-------~ 456 (1391)
|+|++|++|+|+++|+|+++++ ..+. ++.... .....+...... ..+... .. .
T Consensus 620 D~Iivl~~G~ive~Gth~eL~~-----------~~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 688 (1321)
T 4f4c_A 620 DLIISCKNGQVVEVGDHRALMA-----------QQGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQAS 688 (1321)
T ss_dssp SEEEEEETTEEEEEECHHHHHT-----------TTCHHHHHHHHHHHHHHHHHHHCC-----------------------
T ss_pred CEEEEEECCEEECCCCHHHHHH-----------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 9899963996513689999998-----------53279999996221222233233443322321112222234222222
Q ss_pred CHHHHHHHHHHCHHHHH----HHHHHCCCCCCCCCC--CCCC-CCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHH
Q ss_conf 99899999982412133----787513977665211--1123-4665567389999999999999972053799999999
Q 000612 457 TVQEFAEAFQSFHVGQK----ISDELRTPFDKSKSH--RAAL-TTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQ 529 (1391)
Q Consensus 457 ~~~e~~~~f~~~~~~~~----~~~~l~~~~~~~~~~--~~~l-~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~ 529 (1391)
..++.....+.+..... ..++......+.... +... .......+.+ +-+...+..+..+...++.
T Consensus 689 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~ 760 (1321)
T 4f4c_A 689 EMDDIMNRVRSSTIGSITNGPVIDEKEERIGKDALSRLKQELEENNAQKTNLF--------EILYHARPHALSLFIGMST 760 (1321)
T ss_dssp ---------------------------CCCCCCHHHHHHHTTTTSCCCCCCHH--------HHHHHTGGGHHHHHHHHHH
T ss_pred CCCCHHHHHHCCCCCCCCCCCCHHHHHHHCCCHHHHHHHHHHHHCCCCCEEHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 21102211101321245677402577753154038999999997078631099--------9999987789999999999
Q ss_pred HHHHHHH------HHHHHHCCCC-CCCCCCCCCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHH
Q ss_conf 9999999------9987652358-8764345310346999999999--99689999997621046788620378792568
Q 000612 530 IAFVAVV------YMTLFLRTKM-HKDTVTDGGIFAGATFFAITMV--NFNGFSEISMTIAKLPVFYKQRDFRFFPPWAY 600 (1391)
Q Consensus 530 ~~~~ali------~gtif~~~~~-~~~~~~~~~~~~g~lff~~~~~--~~~~~~~i~~~~~~~pvf~kqr~~~~y~~~ay 600 (1391)
..+.+.+ ....++.... +.........+...+|+.+... .+..+...........+..+-|..
T Consensus 761 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~~~~lr~~-------- 832 (1321)
T 4f4c_A 761 ATIGGFIYPTYSVFFTSFMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESLTRDLRNK-------- 832 (1321)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------
T ss_conf 999999999999999999987517934556678999999999999999999999999999999999999999--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------HHHHHHHHHHHHHHHH----CCCHHHH
Q ss_conf 99999987119999999999888761277773778999999999---------9999999999999772----2517889
Q 000612 601 AIPSWILKIPVSFLEVAVWVFLSYYVVGYDSNAGRFFKQYALLL---------GVNQMASALFRFIAVT----GRNMVVA 667 (1391)
Q Consensus 601 ~la~~i~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~l~---------~~~~~~~~lf~~ia~~----~~~~~vA 667 (1391)
+-..+.+.|+++++.. ....|+....+.-.. ........++.+++++ ..+...+
T Consensus 833 -l~~~il~~~~~ffd~~------------~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~ 899 (1321)
T 4f4c_A 833 -LFRNVLSQHIGFFDSP------------QNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMA 899 (1321)
T ss_dssp -HHHHHHTSCSSSTTSG------------GGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHH
T ss_pred -HHHHHHCCCCHHHCCC------------CCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHH
T ss_conf -9888734993332167------------888488885025059999999999999999986537777022137868999
Q ss_pred HHHHHHHHHHHHHHHHCCC----CCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCC
Q ss_conf 9999999999998763113----745356789999977199899999999862288655445788630225655025754
Q 000612 668 NTFGSFALLVLLSLGGFIL----SREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFF 743 (1391)
Q Consensus 668 ~~~~~~~~l~~~l~~Gf~i----~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~ 743 (1391)
.. .+++++++.+..++. ........-..... ..+..+++ .|...++.++..
T Consensus 900 lv--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~e~l--------------------~gi~tIra~~~e 954 (1321)
T 4f4c_A 900 LL--IIAILPIVAFGQYLRGRRFTGKNVKSASEFADS---GKIAIEAI--------------------ENVRTVQALARE 954 (1321)
T ss_dssp HH--HHHHHHHHHHHHHHHTSCCSSCSTTTSSHHHHH---HHHHHHHH--------------------HTHHHHHHTTTH
T ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHH--------------------HHHHHHHHCCCH
T ss_conf 99--999888999999999999999999999998889---88999999--------------------627988861414
Q ss_pred CC-------------------CCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCC-CCCCCE-EECCCCCCCCCCCCCCCC
Q ss_conf 45-------------------51147889999999-999999999999822988-888620-200111221111247864
Q 000612 744 AH-------------------EYWYWLGLGALFGF-VLLLNFAYTLALTFLDPF-EKPRAV-ITEEIESNEQDDRIGGNV 801 (1391)
Q Consensus 744 ~~-------------------~~~~w~~~g~l~~f-~~~f~~~~~l~l~~l~~~-~~~~~~-~~~~~~~~~~~~~~~~~~ 801 (1391)
.. ..+.+...+....+ .+...++++++....... ...... ....... ..
T Consensus 955 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~---~~------ 1025 (1321)
T 4f4c_A 955 DTFYENFCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYA---IT------ 1025 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHH---HH------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH---HH------
T ss_conf 889999999999999999999999999999999999999999998757887537654214789999999---98------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCC-CCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCC
Q ss_conf 33345798888888898875445456410012443102777-67886667788145882116686051134550545675
Q 000612 802 QLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRP-KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDK 880 (1391)
Q Consensus 802 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~ 880 (1391)
......... ....+.-.....+..+.....+.....+ .......+.....++|+||+++|+..+ .
T Consensus 1026 ---~~~~~l~~~-~~~~~~~~~~~~a~~ri~~~l~~~~~~~~~~~~~~~~~~~g~I~f~nVsf~Y~~~~----------~ 1091 (1321)
T 4f4c_A 1026 ---ISTSTLGFA-TSYFPEYAKATFAGGIIFGMLRKISKIDSLSLAGEKKKLYGKVIFKNVRFAYPERP----------E 1091 (1321)
T ss_dssp ---TTTSSTTGG-GGHHHHHHHHHHHHHHHHHHHHCCCSSCTTCCCSBCCCCCCCEEEEEEEECCTTSC----------S
T ss_pred ---HHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCEEEEEEEEEECCCCC----------C
T ss_conf ---778899999-99999999999999989998607665777667787888888189998798579999----------8
Q ss_pred EEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCC
Q ss_conf 27731417777278199997469997577997470898787388999995902780---011315888526898899975
Q 000612 881 LVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVT 957 (1391)
Q Consensus 881 ~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lT 957 (1391)
..+|+|+|+.++|||++||+|+||||||||+++|.|... +.+|+|.+||.++++ ..+++.++||+|++.++. -|
T Consensus 1092 ~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~--p~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gT 1168 (1321)
T 4f4c_A 1092 IEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYD--TLGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CS 1168 (1321)
T ss_dssp SCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSC--CSSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EE
T ss_pred CCCCCCEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CC
T ss_conf 821245169988989999989999819999999956863--899789999998654999999854599878997327-23
Q ss_pred HHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEE
Q ss_conf 88899998872079999988999999999998399642-------22223698877779989999999999851997889
Q 000612 958 IYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIF 1030 (1391)
Q Consensus 958 V~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~ill 1030 (1391)
++|++.|+. .+.+.+++ .++++++..++.+. .|+.+|..| ..||||||||++|||+|+++|+||+
T Consensus 1169 IreNI~~gl---d~~~~sd~----ei~~Al~~a~l~~~I~~Lp~GldT~vge~G-~~LSgGQrQriaiARAllr~~~ILi 1240 (1321)
T 4f4c_A 1169 IAENIIYGL---DPSSVTMA----QVEEAARLANIHNFIAELPEGFETRVGDRG-TQLSGGQKQRIAIARALVRNPKILL 1240 (1321)
T ss_dssp HHHHHSSSS---CTTTSCHH----HHHHHHHHTTCHHHHHTSTTTTCSEETTTS-CSSCHHHHHHHHHHHHHHSCCSEEE
T ss_pred HHHHHHCCC---CCCCCCHH----HHHHHHHHHCCHHHHHCCCCCCCCEECCCC-CCCCHHHHHHHHHHHHHHHCCCEEE
T ss_conf 999974549---99999999----999999982984999717678999823889-1569999999999999971799899
Q ss_pred EECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCCCCCHHHHHH
Q ss_conf 939999999999999999999987389889999268778999742859899259499996699875026899
Q 000612 1031 MDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPLGRHSCHLIS 1102 (1391)
Q Consensus 1031 LDEPTsgLD~~s~~~i~~~l~~~~~~g~tii~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~g~~~~~~~~ 1102 (1391)
||||||+||+.++..|+++|++.. .|+|+|+++|+++. ...+|++++|++ |+++.+|+. .++++
T Consensus 1241 LDEaTSaLD~~tE~~Iq~~l~~~~-~~~TvI~IAHRLsT--i~~aD~I~Vld~-G~IvE~Gth----~eLl~ 1304 (1321)
T 4f4c_A 1241 LDEATSALDTESEKVVQEALDRAR-EGRTCIVIAHRLNT--VMNADCIAVVSN-GTIIEKGTH----TQLMS 1304 (1321)
T ss_dssp EESCCCSTTSHHHHHHHHHHTTTS-SSSEEEEECSSSST--TTTCSEEEEESS-SSEEEEECH----HHHHH
T ss_pred EECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEECCCHHH--HHHCCEEEEEEC-CEEEEECCH----HHHHH
T ss_conf 968111578999999999999973-99989996068999--996999999989-899998888----99984
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=625.59 Aligned_cols=844 Identities=18% Similarity=0.228 Sum_probs=407.7
Q ss_pred HHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCC--CCCCCCEEEEEEEEEEEEEECCCCCCCCHHHHHHHHHHHHHHHH
Q ss_conf 6766889998543056676999999998775219--99995159992049999982587767872688889999997676
Q 000612 78 LQERQRLIDKLVKVTDVDNERFLLKLKNRIDRVG--IDLPKVEVRYEHLNVEAEAFLASNALPSFIKFYTNIFEDILNYL 155 (1391)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~v~f~~l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~~ 155 (1391)
.+.+....+|+.++.+..++ ..+. +..+ .+....+++|+|+++.+..
T Consensus 351 ~~~~~~a~~ri~~~l~~~~~-----~~~~-~~~~~~~~~~~g~i~~~~v~~~y~~------------------------- 399 (1284)
T 3g5u_A 351 FANARGAAYEVFKIIDNKPS-----IDSF-SKSGHKPDNIQGNLEFKNIHFSYPS------------------------- 399 (1284)
T ss_dssp HHHHHHHHHHHHHTTSCCCC-----CSSC-CSSCCCCTTCCCCEEEEEEEECCSS-------------------------
T ss_pred HHHHHHHHHHHHHHHCCCCC-----CCCC-CCCCCCCCCCCCEEEEEEEEEECCC-------------------------
T ss_conf 99999999999999728986-----7766-6567777777771899998997699-------------------------
Q ss_pred HHCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCC---CCEEEEEC
Q ss_conf 405786554246424157784892999976999938999999946989999812199996934798676---52199983
Q 000612 156 RIIPSKKRHLTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVP---QRTAAYIS 232 (1391)
Q Consensus 156 ~~~~~~~~~~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~---~~~~~yv~ 232 (1391)
+ ...++|+|+|+.++||+.++|+||||||||||+++|+|.++|+ +|+|.++|+++.+..+ ++.++||+
T Consensus 400 -----~-~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~ 470 (1284)
T 3g5u_A 400 -----R-KEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVS 470 (1284)
T ss_dssp -----T-TSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEEC
T ss_pred -----C-CCCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEEC
T ss_conf -----9-9871012545897599889998999997999999980788999---738999999877579999986548986
Q ss_pred CCCCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 78988999999999998656127873145669989999862999998867999998522244779999999990995435
Q 000612 233 QHDNHIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLDVCA 312 (1391)
Q Consensus 233 Q~d~~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~~ 312 (1391)
|++.+ +..||+||+.|+.. ....+.+.++++.. +. +.. +..|+++.
T Consensus 471 Q~~~l-~~~ti~eNi~~g~~----~~~~~~~~~~~~~~---~~------------------------~~~--i~~l~~g~ 516 (1284)
T 3g5u_A 471 QEPVL-FATTIAENIRYGRE----DVTMDEIEKAVKEA---NA------------------------YDF--IMKLPHQF 516 (1284)
T ss_dssp SSCCC-CSSCHHHHHHHHCS----SCCHHHHHHHHHHT---TC------------------------HHH--HHHSTTGG
T ss_pred CCCCC-CCCCHHHHHHCCCC----CCCHHHHHHHHHHH---CC------------------------HHH--HHHCCCCC
T ss_conf 88753-77669999745798----99999999999982---96------------------------999--97465633
Q ss_pred CCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHC
Q ss_conf 54334644556874456689999997339853422359989999979999999999867039869999825900388413
Q 000612 313 DTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLF 392 (1391)
Q Consensus 313 dt~VG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~f 392 (1391)
||.+|+.+. .||||||||++|||+++.+|++++|||||++||+.++..+.+.++... .++|+|+ +.|.... ...+
T Consensus 517 ~t~~~~~g~-~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~--~~~t~i~-itH~l~~-i~~~ 591 (1284)
T 3g5u_A 517 DTLVGERGA-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKAR--EGRTTIV-IAHRLST-VRNA 591 (1284)
T ss_dssp GCCCSSSSC-SSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHH--TTSEEEE-ECSCHHH-HTTC
T ss_pred CCCCCCCCC-CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC--CCCEEEE-EECCHHH-HHCC
T ss_conf 450147878-659999999999999952999899979877779999999999999973--9998999-9407789-9749
Q ss_pred CEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHHHHCCCHHHH-HHH-HHCCCCC--CCCCHHHHHHHHHH
Q ss_conf 7099973973998539667999998369989999996-78998710822245-655-2028998--66799899999982
Q 000612 393 DDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGV-ADFLQEVTSRKDQR-QYW-AHKEKPY--RFVTVQEFAEAFQS 467 (1391)
Q Consensus 393 D~i~lL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~-aDfl~ev~s~~~~~-~~~-~~~~~~~--~~~~~~e~~~~f~~ 467 (1391)
|+|++|++|+++++|+++++++- ++. ...+.......+.. ... .....+. ..............
T Consensus 592 d~i~vl~~G~i~~~g~~~~l~~~-----------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 660 (1284)
T 3g5u_A 592 DVIAGFDGGVIVEQGNHDELMRE-----------KGIYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIR 660 (1284)
T ss_dssp SEEEECSSSCCCCEECHHHHHHT-----------TSHHHHHHHHTC----------------------------------
T ss_pred CEEEEEECCEEEEECCHHHHHHC-----------CCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
T ss_conf 98999989999997889999867-----------8779999997430022111333333222223443333333320003
Q ss_pred CHHHHHHHHHHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-------HHHHHH
Q ss_conf 41213378751397766--521111234665567389999999999999972053799999999999-------999999
Q 000612 468 FHVGQKISDELRTPFDK--SKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAF-------VAVVYM 538 (1391)
Q Consensus 468 ~~~~~~~~~~l~~~~~~--~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~-------~ali~g 538 (1391)
. .........+.+. ...............+.+..++. .++.+..+..-++..++ .+.+++
T Consensus 661 ~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 729 (1284)
T 3g5u_A 661 R---RSTRKSICGPHDQDRKLSTKEALDEDVPPASFWRILKL--------NSTEWPYFVVGIFCAIINGGLQPAFSVIFS 729 (1284)
T ss_dssp --------------------------CCCCCSCCCTTHHHHH--------HHHTCCCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred C---CCCCCCCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHH--------HCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 4---54333445642233211024555313662589999998--------451579999999999999999999999999
Q ss_pred HH---HHCCCCCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHH
Q ss_conf 87---652358876434531034699999999999--6899999976210467886203787925689999998711999
Q 000612 539 TL---FLRTKMHKDTVTDGGIFAGATFFAITMVNF--NGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSF 613 (1391)
Q Consensus 539 ti---f~~~~~~~~~~~~~~~~~g~lff~~~~~~~--~~~~~i~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~ 613 (1391)
.+ +.... ..........+...++..+....+ ..+...........+-.+-|. .+-..+.+.|+.+
T Consensus 730 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~f 799 (1284)
T 3g5u_A 730 KVVGVFTNGG-PPETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSW 799 (1284)
T ss_dssp HHHHHHHSSC-STTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHH
T ss_pred HHHHHHHCCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHH
T ss_conf 9999985568-50336779999999999999999999999999999999999999999---------9999998399888
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-------------HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Q ss_conf 99999998887612777737789999999999-------------99999999999977225178899999999999998
Q 000612 614 LEVAVWVFLSYYVVGYDSNAGRFFKQYALLLG-------------VNQMASALFRFIAVTGRNMVVANTFGSFALLVLLS 680 (1391)
Q Consensus 614 ~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~l~~-------------~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l 680 (1391)
++. -....++....+.-... ..........++..+.-+...+. ..++.+++++
T Consensus 800 f~~------------~~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~ 865 (1284)
T 3g5u_A 800 FDD------------PKNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIA 865 (1284)
T ss_dssp HHS------------CSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHH
T ss_pred HCC------------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_conf 757------------89988999999999999999999999999999999999999999999699999--9999999999
Q ss_pred HHHCCCCCCCHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCC-------CCHHHHHH
Q ss_conf 76311374535678999997719989999999986228865544578863022565502575445-------51147889
Q 000612 681 LGGFILSREDIKKWWKWAYWCSPLTYAQNAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAH-------EYWYWLGL 753 (1391)
Q Consensus 681 ~~Gf~i~~~~ip~w~~W~~~isp~~y~~~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~-------~~~~w~~~ 753 (1391)
+.+++..+ +..-.....--.+....-...|....-.....-+ ......+.+.-..+ ....|.+
T Consensus 866 ~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~----~e~~~~~~~~~~~~~~~~~~~~~~~~~~- 935 (1284)
T 3g5u_A 866 IAGVVEMK-----MLSGQALKDKKELEGSGKIATEAIENFRTVVSLT----REQKFETMYAQSLQIPYRNAMKKAHVFG- 935 (1284)
T ss_dssp HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS----SHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf 99999999-----9999999999999999999999998899999846----5999999999999999999999999999-
Q ss_pred HHHHHHHHHHH-HHHHHHHHHCCCCCCCCCEEECCC-CC-CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 99999999999-999999982298888862020011-12-2111124786433345798888888898875445456410
Q 000612 754 GALFGFVLLLN-FAYTLALTFLDPFEKPRAVITEEI-ES-NEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQ 830 (1391)
Q Consensus 754 g~l~~f~~~f~-~~~~l~l~~l~~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 830 (1391)
...++..... +...+.+.+-...-.. ..+.... .. ....... . ..+..+... .+.-........+
T Consensus 936 -~~~~~~~~~~~~~~~~~~~~g~~lv~~-~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~--------~~~~~~~~~a~~r 1003 (1284)
T 3g5u_A 936 -ITFSFTQAMMYFSYAAAFRFGAYLVTQ-QLMTFENVLLVFSAIVFG-A-MAVGQVSSF--------APDYAKATVSASH 1003 (1284)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCCSS-SCSCSTTHHHHHHHHHHH-H-HHHHHHTSS--------SCCSTHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHHH-H-HHHHHHHHH--------HHHHHHHHHHHHH
T ss_conf -999999999999999999999999990-980699999999999999-9-999999999--------9999999999999
Q ss_pred HHHHHHHHCCCC--CCCCCCCCCCCCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHH
Q ss_conf 012443102777--678866677881458821166860511345505456752773141777727819999746999757
Q 000612 831 SLSLAEAEASRP--KKKGMVLPFEPHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKT 908 (1391)
Q Consensus 831 ~~~~~~~~~~~~--~~~~~~l~~~~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKT 908 (1391)
.....+..+... ...+...+.....++++|+++.++..+ ...+|+|+|+.+++||++||+|+||||||
T Consensus 1004 i~~~l~~~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~~----------~~~~l~~vsl~i~~Ge~v~ivG~sGsGKS 1073 (1284)
T 3g5u_A 1004 IIRIIEKTPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTRP----------SIPVLQGLSLEVKKGQTLALVGSSGCGKS 1073 (1284)
T ss_dssp HHHHHHSCCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCGG----------GCCSBSSCCEEECSSSEEEEECSSSTTHH
T ss_pred HHHHHCCCCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCCC----------CCEEECCEEEEECCCCEEEEECCCCCCHH
T ss_conf 99998388766665556654567778579999899779999----------87002030599769988999889999789
Q ss_pred HHHHHHCCCCCCCEEEEEEEECCCCCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Q ss_conf 7997470898787388999995902780---0113158885268988999758889999887207999998899999999
Q 000612 909 TLMDVLAGRKTGGYITGNITISGYPKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDE 985 (1391)
Q Consensus 909 TLl~~Lag~~~~~~~~G~I~i~g~~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~ 985 (1391)
||+++|+|... +.+|+|.++|.+... ...++.++||+|+..++ ..||+|++.+.... ...+.++ +++
T Consensus 1074 Tl~~~l~g~~~--p~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~ 1143 (1284)
T 3g5u_A 1074 TVVQLLERFYD--PMAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVR 1143 (1284)
T ss_dssp HHHHHHTTSSC--CSEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHH
T ss_pred HHHHHHHCCCC--CCCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHH
T ss_conf 99999946867--89977989999800078999970268987787406-66699997466877---8999999----999
Q ss_pred HHHHCCCCC-------CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCC
Q ss_conf 999839964-------2222236988777799899999999998519978899399999999999999999999873898
Q 000612 986 VMELVELNP-------LRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGR 1058 (1391)
Q Consensus 986 vl~~l~L~~-------~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~ 1058 (1391)
.++..++.+ -.|+.+|.. ...||||||||++|||+|+.+|+||+|||||+|||..++..+++.+++. ..|+
T Consensus 1144 ~~~~~~~~~~i~~l~~gldt~vge~-G~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~-~~~~ 1221 (1284)
T 3g5u_A 1144 AAKEANIHQFIDSLPDKYNTRVGDK-GTQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKA-REGR 1221 (1284)
T ss_dssp HHHHHTCHHHHSSTTTGGGCBCSTT-SCSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHH-SSSS
T ss_pred HHHHHCCHHHHHHCCCCCCCCCCCC-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHH-CCCC
T ss_conf 9998395999972704245611788-8933899999999999997499999986875557999999999999986-7999
Q ss_pred EEEEEECCCCHHHHHHCCEEEEEECCCEEEEECCC
Q ss_conf 89999268778999742859899259499996699
Q 000612 1059 TVVCTIHQPSIDIFEAFDELFLMKRGGQEIYVGPL 1093 (1391)
Q Consensus 1059 tii~t~Hqps~~i~~~fD~llll~~gG~~vy~G~~ 1093 (1391)
|+|+++|+++. + ..+|++++|++ |+++..|+.
T Consensus 1222 tvi~isH~l~~-i-~~~dri~vl~~-G~i~~~g~~ 1253 (1284)
T 3g5u_A 1222 TCIVIAHRLST-I-QNADLIVVIQN-GKVKEHGTH 1253 (1284)
T ss_dssp CEEEECSCTTG-G-GSCSEEEEEET-BEEEEEECH
T ss_pred EEEEEECCHHH-H-HCCCEEEEEEC-CEEEEECCH
T ss_conf 89999558799-9-80998999989-989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=457.41 Aligned_cols=436 Identities=23% Similarity=0.292 Sum_probs=308.1
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 46424157784892999976999938999999946989999812199---------9969347986-----765219998
Q 000612 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1391)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1391)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.|+ +|++ .++|.++... .....++++
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37898899---999999999865612787314566998999986299999886799999852224477999999999099
Q 000612 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1391)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1391)
.|.....+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 54355433464455687445668999999733985342235998999997999999999986703986999982590038
Q 000612 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1391)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1391)
++..|..++ .|||||||||+||++|+.+|++|+|||||++||..++..+.+.|+++.. .+.| |+.+.|...++
T Consensus 219 ~~~~~~~~~-----~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t-vIivsHdl~~~ 291 (607)
T 3bk7_A 219 ENVLDRELH-----QLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKA-VLVVEHDLAVL 291 (607)
T ss_dssp TTGGGSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCHHHH
T ss_pred CCHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHH
T ss_conf 704379805-----6999999999999998459999999797435899999999999999986-6998-99996485898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 84137099973973998539667999998369989999996789987108222456552028998667998999999824
Q 000612 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1391)
Q Consensus 389 ~~~fD~i~lL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~~ 468 (1391)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12133787513977665211112346655673899999999999999720537999999999999999998765235887
Q 000612 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1391)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1391)
+. . +.... .+.
T Consensus 315 ----------------------------~~--~---------~~~i~------------------------~~~------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGIN------------------------EFL------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHHH------------------------HHH------
T ss_pred ----------------------------HH--H---------HHHHH------------------------HHH------
T ss_conf ----------------------------32--7---------99999------------------------997------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64345310346999999999996899999976210467886203787925689999998711999999999988876127
Q 000612 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1391)
Q Consensus 549 ~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1391)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77737789999999999999999999999772251788999999999999987631137453567899999771998999
Q 000612 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1391)
Q Consensus 629 ~~~~~~~ff~~~l~l~~~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1391)
.|+.
T Consensus 326 -----------------------------------------------------~~~~----------------------- 329 (607)
T 3bk7_A 326 -----------------------------------------------------QGYL----------------------- 329 (607)
T ss_dssp -----------------------------------------------------HTEE-----------------------
T ss_pred -----------------------------------------------------HHCC-----------------------
T ss_conf -----------------------------------------------------5101-----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999862288655445788630225655025754455114788999999999999999999982298888862020011
Q 000612 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1391)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~f~~~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1391)
+... . .+. . .+ .
T Consensus 330 -----------------~~~~--~--------~~~--~----------------------------~~------~----- 341 (607)
T 3bk7_A 330 -----------------KDEN--V--------RFR--P----------------------------YE------I----- 341 (607)
T ss_dssp -----------------TTTT--E--------ECC--S----------------------------SC------C-----
T ss_pred -----------------HHHH--H--------HCC--C----------------------------CC------C-----
T ss_conf -----------------3455--4--------301--2----------------------------12------3-----
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579888888889887544545641001244310277767886667788145882116686051
Q 000612 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1391)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~v~y~~~~~ 868 (1391)
.. .. . ...... .....+.++|+++.+.
T Consensus 342 ------~~------------------~~--~-------------------~~~~~~------~~~~~l~~~~l~~~~~-- 368 (607)
T 3bk7_A 342 ------RF------------------TK--L-------------------SERVDV------ERETLVEYPRLVKDYG-- 368 (607)
T ss_dssp ------CC------------------CC--S-------------------TTSCCC------CCCEEEEECCEEEECS--
T ss_pred ------CC------------------CC--C-------------------CCCCCC------CCCEEEEEECEEEEEC--
T ss_conf ------45------------------65--7-------------------775444------6752899913098744--
Q ss_pred HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 13455054567527731417777278199997469997577997470898787388999995902780011315888526
Q 000612 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1391)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~~~~~~~~~~~~gyv~Q 948 (1391)
. ..|+++++.+++||+++|+|+||||||||+++|+|... +.+|+|.+ .+.++|++|
T Consensus 369 -----------~-~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~I~~----------~~~i~~v~Q 424 (607)
T 3bk7_A 369 -----------S-FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKVEW----------DLTVAYKPQ 424 (607)
T ss_dssp -----------S-CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBSCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------EEEEEEEEC
T ss_conf -----------3-48993515327998999999999899999999966988--88628999----------027999805
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89889997588899998872079999988999999999998399642222236988777799899999999998519978
Q 000612 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1391)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~i 1028 (1391)
+....+.+||.|.+........ .....++++++.+++.+..+..+ ..||||||||++||++|+.+|++
T Consensus 425 ~~~~~~~~tv~e~~~~~~~~~~-------~~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~QRv~iAraL~~~p~l 492 (607)
T 3bk7_A 425 YIKAEYEGTVYELLSKIDSSKL-------NSNFYKTELLKPLGIIDLYDRNV-----EDLSGGELQRVAIAATLLRDADI 492 (607)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHH-------HCHHHHHHTHHHHTCTTTTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCC-------CHHHHHHHHHHHCCCCHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 7667789849999975312587-------78999999998769933754992-----23799999999999999748998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 899399999999999999999999873-8988999926877899974285989925-949999669987
Q 000612 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1391)
Q Consensus 1029 llLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tii~t~Hqps~~i~~~fD~llll~~-gG~~vy~G~~g~ 1095 (1391)
|+|||||+|||..++..+++.|+++++ .|.|||+++|++. .+...+|++++|.. .|+.+..|++.+
T Consensus 493 LlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~ 560 (607)
T 3bk7_A 493 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMG 560 (607)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHH
T ss_conf 99968744789999999999999999747989999909899-999869999999598306974289899
No 4
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=452.86 Aligned_cols=184 Identities=21% Similarity=0.260 Sum_probs=145.5
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCCCCCCCCCCCEEEEECCCC-CCCCCCCH
Q ss_conf 24642415778489299997699993899999994698999981219999693479867652199983789-88999999
Q 000612 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTVTYNGHDMDEFVPQRTAAYISQHD-NHIGEMTV 243 (1391)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v~~nG~~~~~~~~~~~~~yv~Q~d-~~~~~lTV 243 (1391)
+.+|+|+|+.+++|+.++|+||||||||||+++|+| |+| +|.+... ....+|++|+. ..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCC-CCCCCCCCCCCCC
Q ss_conf 999998656127873145669989999862999998867999998522244779999999990995-4355433464455
Q 000612 244 RETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGLD-VCADTMVGDEMIR 322 (1391)
Q Consensus 244 rEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dt~VG~~~~~ 322 (1391)
.|++.+ ...+ . ..+++.+++.+||+ +..+..++
T Consensus 514 ~e~l~~--~~~~--~-------------------------------------~~~v~~~L~~lgL~~~~~~~~~~----- 547 (986)
T 2iw3_A 514 LDFVFE--SGVG--T-------------------------------------KEAIKDKLIEFGFTDEMIAMPIS----- 547 (986)
T ss_dssp HHHHHT--TCSS--C-------------------------------------HHHHHHHHHHTTCCHHHHHSBGG-----
T ss_pred HHHHHH--HHCC--H-------------------------------------HHHHHHHHHHCCCCHHHHCCCCC-----
T ss_conf 999998--6127--9-------------------------------------99999999986998446439802-----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEECCCE
Q ss_conf 68744566899999973398534223599899999799999999998670398699998259003884137099973973
Q 000612 323 GISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILLSDGQ 402 (1391)
Q Consensus 323 glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL~~G~ 402 (1391)
.||||||||+.||++++.+|++|+|||||+|||..+..++.+.|++ .+.|+|+ +.|...++.+.+|++++|.+|+
T Consensus 548 ~LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIi-vSHdl~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 548 ALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSIT-ISHDSVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp GCCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEE-ECSCHHHHHHHCSEEEEEETTE
T ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEE-EECCHHHHHHHCCEEEEEECCE
T ss_conf 0799999999999999649999999797667999999999999986----7998999-9798899998689999997994
Q ss_pred EE-EECCHHHHH
Q ss_conf 99-853966799
Q 000612 403 IV-YQGPRELVL 413 (1391)
Q Consensus 403 iv-~~G~~~~~~ 413 (1391)
++ +.|+.+++.
T Consensus 623 iv~~~G~~~e~~ 634 (986)
T 2iw3_A 623 LRKYKGNFTEFV 634 (986)
T ss_dssp EEEEESCHHHHH
T ss_pred EECCCCCHHHHH
T ss_conf 426779999998
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=450.08 Aligned_cols=436 Identities=23% Similarity=0.285 Sum_probs=306.1
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCCCCCCC-----CCCCEEEEE
Q ss_conf 46424157784892999976999938999999946989999812199---------9969347986-----765219998
Q 000612 166 TILKDVSGVIKPGRLTLLLGPPSSGKTTLLLALAGKLDPTLKVSGTV---------TYNGHDMDEF-----VPQRTAAYI 231 (1391)
Q Consensus 166 ~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL~~LaG~~~~~~~~~G~v---------~~nG~~~~~~-----~~~~~~~yv 231 (1391)
.+|+|+| .+++|+.++|+||||||||||+++|+|.+.|+ +|++ .++|.++... .....++++
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 37898899---999999999865612787314566998999986299999886799999852224477999999999099
Q 000612 232 SQHDNHIG---EMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPDIDVYMKAIATEGQEANVITDYYLKVLGL 308 (1391)
Q Consensus 232 ~Q~d~~~~---~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d~d~~~~a~~~~~~~~~~~~d~il~~lgL 308 (1391)
.|+....+ ..||+|++..... ..+++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCHHH
Q ss_conf 54355433464455687445668999999733985342235998999997999999999986703986999982590038
Q 000612 309 DVCADTMVGDEMIRGISGGQKKRVTTGEMMVGPALALFMDEISTGLDSSTTFQIVNCLRQNIHINSGTAVISLLQPAPET 388 (1391)
Q Consensus 309 ~~~~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~illlDEptsgLDs~t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~ 388 (1391)
++..+..++ .|||||||||.||++|+.+|++|+|||||++||..+..++.+.|+++.. .+.| |+.+.|...++
T Consensus 149 ~~~~~~~~~-----~LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~t-vi~vsHd~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQ-----HLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKS-VLVVEHDLAVL 221 (538)
T ss_dssp TTTTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCE-EEEECSCHHHH
T ss_pred CHHHHCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCE-EEEEECCHHHH
T ss_conf 736609835-----4899999999999998469999999897345798899999999999996-5987-99994788999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCHHHHHHHHHCCCCCCCCCHHHHHHHHHHC
Q ss_conf 84137099973973998539667999998369989999996789987108222456552028998667998999999824
Q 000612 389 YDLFDDIILLSDGQIVYQGPRELVLEFFASMGFRCPKRKGVADFLQEVTSRKDQRQYWAHKEKPYRFVTVQEFAEAFQSF 468 (1391)
Q Consensus 389 ~~~fD~i~lL~~G~iv~~G~~~~~~~~F~~lGf~cp~~~~~aDfl~ev~s~~~~~~~~~~~~~~~~~~~~~e~~~~f~~~ 468 (1391)
...+|+|++|.+|...| |. ...+
T Consensus 222 ~~~~dri~vl~~~~~~~-~~----------------------------------------~~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVY-GI----------------------------------------FSQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTE-EE----------------------------------------ECCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CC----------------------------------------CCCH----------------
T ss_conf 97688999986863244-02----------------------------------------2553----------------
Q ss_pred HHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
Q ss_conf 12133787513977665211112346655673899999999999999720537999999999999999998765235887
Q 000612 469 HVGQKISDELRTPFDKSKSHRAALTTETYGVGKRELLKANISRELLLMKRNSFVYIFKLIQIAFVAVVYMTLFLRTKMHK 548 (1391)
Q Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~l~~~~~~~s~~~~~~~~~~R~~l~~~R~~~~~~~~~~~~~~~ali~gtif~~~~~~~ 548 (1391)
+. . +... .. +.
T Consensus 245 ----------------------------~~--~---------~~~~----------~~--------------~~------ 255 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNGI----------NE--------------FL------ 255 (538)
T ss_dssp ----------------------------EE--H---------HHHH----------HH--------------HH------
T ss_pred ----------------------------HH--H---------HHHH----------HH--------------HH------
T ss_conf ----------------------------55--8---------9999----------98--------------76------
Q ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
Q ss_conf 64345310346999999999996899999976210467886203787925689999998711999999999988876127
Q 000612 549 DTVTDGGIFAGATFFAITMVNFNGFSEISMTIAKLPVFYKQRDFRFFPPWAYAIPSWILKIPVSFLEVAVWVFLSYYVVG 628 (1391)
Q Consensus 549 ~~~~~~~~~~g~lff~~~~~~~~~~~~i~~~~~~~pvf~kqr~~~~y~~~ay~la~~i~~iP~~~~~~~i~~~i~Y~~~g 628 (1391)
T Consensus 256 -------------------------------------------------------------------------------- 255 (538)
T 1yqt_A 256 -------------------------------------------------------------------------------- 255 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCHHHHHH
Q ss_conf 77737789999999999999999999999772251788999999999999987631137453567899999771998999
Q 000612 629 YDSNAGRFFKQYALLLGVNQMASALFRFIAVTGRNMVVANTFGSFALLVLLSLGGFILSREDIKKWWKWAYWCSPLTYAQ 708 (1391)
Q Consensus 629 ~~~~~~~ff~~~l~l~~~~~~~~~lf~~ia~~~~~~~vA~~~~~~~~l~~~l~~Gf~i~~~~ip~w~~W~~~isp~~y~~ 708 (1391)
.|+.
T Consensus 256 -----------------------------------------------------~~~~----------------------- 259 (538)
T 1yqt_A 256 -----------------------------------------------------RGYL----------------------- 259 (538)
T ss_dssp -----------------------------------------------------HTEE-----------------------
T ss_pred -----------------------------------------------------HHCC-----------------------
T ss_conf -----------------------------------------------------4023-----------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEECCC
Q ss_conf 99999862288655445788630225655025754455114788999999999999999999982298888862020011
Q 000612 709 NAIVANEFLGHSWKKFTQDSSETLGVQVLKSRGFFAHEYWYWLGLGALFGFVLLLNFAYTLALTFLDPFEKPRAVITEEI 788 (1391)
Q Consensus 709 ~al~~nef~~~~~~~~~~~~~~~~G~~~L~~~g~~~~~~~~w~~~g~l~~f~~~f~~~~~l~l~~l~~~~~~~~~~~~~~ 788 (1391)
.... . ... .. .
T Consensus 260 -----------------~~~~--~--------~~~-~~-----------------------------~------------ 270 (538)
T 1yqt_A 260 -----------------KDEN--V--------RFR-PY-----------------------------E------------ 270 (538)
T ss_dssp -----------------TTTT--E--------ECS-SS-----------------------------C------------
T ss_pred -----------------CHHH--H--------CCC-CC-----------------------------C------------
T ss_conf -----------------0023--2--------034-44-----------------------------5------------
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCCCCCCCEEEEECEEEEEECC
Q ss_conf 12211112478643334579888888889887544545641001244310277767886667788145882116686051
Q 000612 789 ESNEQDDRIGGNVQLSTLGGSSNHNTRSGSTDDIRGQQSSSQSLSLAEAEASRPKKKGMVLPFEPHSLTFDEVVYSVDMP 868 (1391)
Q Consensus 789 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~i~~~~v~y~~~~~ 868 (1391)
. ....+ . .. . . +.....+.++|+++.++
T Consensus 271 -------~------------------~~~~~------------~---~~-~---~------~~~~~~l~~~~l~~~~~-- 298 (538)
T 1yqt_A 271 -------I------------------KFTKT------------G---ER-V---E------IERETLVTYPRLVKDYG-- 298 (538)
T ss_dssp -------C------------------CCCCS------------S---GG-G---S------SCCCEEEEECCEEEEET--
T ss_pred -------C------------------CCCCC------------C---CC-C---C------CCCCEEEEEEEEEEEEC--
T ss_conf -------5------------------54557------------7---65-5---6------67871899930799989--
Q ss_pred HHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECC
Q ss_conf 13455054567527731417777278199997469997577997470898787388999995902780011315888526
Q 000612 869 EEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQ 948 (1391)
Q Consensus 869 ~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~~~~~~~~~~~~gyv~Q 948 (1391)
. ..|+++++.+++||++||+|+||||||||+++|+|... +.+|+|.+ ...++|++|
T Consensus 299 -----------~-~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~--p~~G~i~~----------~~~i~~v~Q 354 (538)
T 1yqt_A 299 -----------S-FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEE--PTEGKIEW----------DLTVAYKPQ 354 (538)
T ss_dssp -----------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSC--CSBCCCCC----------CCCEEEECS
T ss_pred -----------C-EEEEECCCCCCCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCEEEEE----------CCEEEEEEC
T ss_conf -----------9-89990744128998999988999999999999967998--99718998----------746999826
Q ss_pred CCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCE
Q ss_conf 89889997588899998872079999988999999999998399642222236988777799899999999998519978
Q 000612 949 NDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSI 1028 (1391)
Q Consensus 949 ~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~i 1028 (1391)
+....+..||.|.+......... ....++++++.+++.+..+..+ ..||||||||+.||++|+.+|++
T Consensus 355 ~~~~~~~~tv~~~~~~~~~~~~~-------~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGe~qrv~lAraL~~~p~l 422 (538)
T 1yqt_A 355 YIKADYEGTVYELLSKIDASKLN-------SNFYKTELLKPLGIIDLYDREV-----NELSGGELQRVAIAATLLRDADI 422 (538)
T ss_dssp SCCCCCSSBHHHHHHHHHHHHHT-------CHHHHHHTTTTTTCGGGTTSBG-----GGCCHHHHHHHHHHHHHTSCCSE
T ss_pred CCCCCCCCCHHHHHHHHHCCCCC-------HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCE
T ss_conf 77678888599999864036887-------8999999999749915653994-----44899999999999999728998
Q ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCC
Q ss_conf 899399999999999999999999873-8988999926877899974285989925-949999669987
Q 000612 1029 IFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGR 1095 (1391)
Q Consensus 1029 llLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tii~t~Hqps~~i~~~fD~llll~~-gG~~vy~G~~g~ 1095 (1391)
|+|||||+|||..+...+++.|+++++ .|.|||+++|++. ++...+|++++|.+ .|+.+..|++.+
T Consensus 423 LlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~ 490 (538)
T 1yqt_A 423 YLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMG 490 (538)
T ss_dssp EEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEE
T ss_pred EEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHH
T ss_conf 99939801089999999999999999867989999939899-999968999999088315740489899
No 6
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=441.57 Aligned_cols=216 Identities=20% Similarity=0.237 Sum_probs=167.1
Q ss_pred EEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCC
Q ss_conf 45882116686051134550545675277314177772781999974699975779974708987873889999959027
Q 000612 855 SLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPK 934 (1391)
Q Consensus 855 ~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~~~ 934 (1391)
.+.+++++..+. . ..|+.+++.+++||+++|+|+||||||||+++|+|... +.+|+|.+++
T Consensus 269 ~l~~~~l~~~~~-------------~-~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~--p~~G~i~~~~--- 329 (538)
T 3ozx_A 269 KMKWTKIIKKLG-------------D-FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEIT--ADEGSVTPEK--- 329 (538)
T ss_dssp EEEECCEEEEET-------------T-EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSC--CSBCCEESSC---
T ss_pred EEEECCEEEEEC-------------C-EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCC--CCCCEEEECC---
T ss_conf 699823399979-------------8-89982664688998999999999989999999957888--9981899998---
Q ss_pred CCCCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHH
Q ss_conf 80011315888526898899975888999988720799999889999999999983996422222369887777998999
Q 000612 935 KQETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRK 1014 (1391)
Q Consensus 935 ~~~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gLSgGqrk 1014 (1391)
+.++|++|+.......||+|++.+... ..... ....++++++.+++.+..+..+ ..|||||||
T Consensus 330 ------~~i~~~~q~~~~~~~~tv~~~l~~~~~--~~~~~----~~~~~~~~l~~~~l~~~~~~~~-----~~LSGGq~Q 392 (538)
T 3ozx_A 330 ------QILSYKPQRIFPNYDGTVQQYLENASK--DALST----SSWFFEEVTKRLNLHRLLESNV-----NDLSGGELQ 392 (538)
T ss_dssp ------CCEEEECSSCCCCCSSBHHHHHHHHCS--STTCT----TSHHHHHTTTTTTGGGCTTSBG-----GGCCHHHHH
T ss_pred ------EEEEEECHHCCCCCCCCHHHHHHHHHH--HCCCH----HHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHH
T ss_conf ------456761400034547779999987553--11211----6999999998759977862893-----227999999
Q ss_pred HHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHCCEEEEEECC-CEEEEECC
Q ss_conf 99999998519978899399999999999999999999873-89889999268778999742859899259-49999669
Q 000612 1015 RLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELFLMKRG-GQEIYVGP 1092 (1391)
Q Consensus 1015 RlsIa~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~-~g~tii~t~Hqps~~i~~~fD~llll~~g-G~~vy~G~ 1092 (1391)
|++||++|+.+|++|+|||||+|||..++..+++.|+++++ .|.|||+++|+.. ++...+|++++|+.+ |.....++
T Consensus 393 Rv~iAraL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~ 471 (538)
T 3ozx_A 393 KLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATS 471 (538)
T ss_dssp HHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECC
T ss_pred HHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCC
T ss_conf 9999999970899899969865799999999999999999738989999958899-999968999999698510116798
Q ss_pred CCCCHHHHHHHHHHC
Q ss_conf 987502689998719
Q 000612 1093 LGRHSCHLISYFEAI 1107 (1391)
Q Consensus 1093 ~g~~~~~~~~yF~~~ 1107 (1391)
+..-......|+..+
T Consensus 472 ~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 472 PVTLKTGMNEFLREL 486 (538)
T ss_dssp CEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHC
T ss_conf 477887888887416
No 7
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=441.15 Aligned_cols=214 Identities=21% Similarity=0.284 Sum_probs=150.4
Q ss_pred CEEEECCEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCCC----CEEEEEECCCCC
Q ss_conf 2464241577848929999769999389999---------------------999469899998----121999969347
Q 000612 165 LTILKDVSGVIKPGRLTLLLGPPSSGKTTLL---------------------LALAGKLDPTLK----VSGTVTYNGHDM 219 (1391)
Q Consensus 165 ~~iL~~vs~~i~pG~~~~ilGp~GsGKSTLL---------------------~~LaG~~~~~~~----~~G~v~~nG~~~ 219 (1391)
.++|+|||+.+++|++++|+||||||||||+ +.+.|...|+.. ..|.|.++|.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred CCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCHH
T ss_conf 64023438998799899998999999888715101232111000110024455530345677563213564157447201
Q ss_pred CCCCCCCEEEEECCCCC-------------------CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHCCCCCCCC
Q ss_conf 98676521999837898-------------------89999999999986561278731456699899998629999988
Q 000612 220 DEFVPQRTAAYISQHDN-------------------HIGEMTVRETLAFSARCQGVGTRYEMLTELARREKAAGIKPDPD 280 (1391)
Q Consensus 220 ~~~~~~~~~~yv~Q~d~-------------------~~~~lTVrEtl~f~~~~~g~~~~~~~~~~~~~~~~~~~~~pd~d 280 (1391)
... +++.+++++|... .++.+||+|++.+....... .. ......
T Consensus 111 ~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-~~-------~~~~~~-------- 173 (670)
T 3ux8_A 111 SRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-EK-------EAQIAR-------- 173 (670)
T ss_dssp -----CCBHHHHTTCC-------------------------CC-------------------------------------
T ss_pred HCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-HH-------HHHHHH--------
T ss_conf 025-5000046511256677777531111234443334578599999975203643-14-------567788--------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--CCEEECCCCCCCHH
Q ss_conf 6799999852224477999999999099543-55433464455687445668999999733985--34223599899999
Q 000612 281 IDVYMKAIATEGQEANVITDYYLKVLGLDVC-ADTMVGDEMIRGISGGQKKRVTTGEMMVGPAL--ALFMDEISTGLDSS 357 (1391)
Q Consensus 281 ~d~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dt~VG~~~~~glSGGqrkRvsia~~l~~~~~--illlDEptsgLDs~ 357 (1391)
. ...+..... .+++.+||++. .|..++ .|||||||||.||++|+.+|+ +|+|||||+|||+.
T Consensus 174 ------~---~~~~~~~~~-~~l~~~gL~~~~~~~~~~-----~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~ 238 (670)
T 3ux8_A 174 ------L---ILREIRDRL-GFLQNVGLDYLTLSRSAG-----TLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQR 238 (670)
T ss_dssp --------------CHHHH-HHHHHTTCTTCCTTCBGG-----GSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGG
T ss_pred ------H---HHHHHHHHH-HHHHHCCCCHHHHCCCCC-----CCCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHH
T ss_conf ------8---899999999-899975984344149700-----1899999999999999628998789997985689999
Q ss_pred HHHHHHHHHHHHHHHCCCEEEEEEECCCHHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 79999999999867039869999825900388413709997------397399853966799
Q 000612 358 TTFQIVNCLRQNIHINSGTAVISLLQPAPETYDLFDDIILL------SDGQIVYQGPRELVL 413 (1391)
Q Consensus 358 t~~~i~~~L~~~~~~~~~t~ii~l~Q~~~~~~~~fD~i~lL------~~G~iv~~G~~~~~~ 413 (1391)
+..++.+.|+++.. .+.|+|+ ++|.... ...+|+|++| .+|++++.|+.+++.
T Consensus 239 ~~~~l~~~l~~l~~-~g~tvi~-vtHd~~~-~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 239 DNDRLIATLKSMRD-LGNTLIV-VEHDEDT-MLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GHHHHHHHHHHHHH-TTCEEEE-ECCCHHH-HHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHH-CCCEEEE-EECCHHH-HHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 99999999999997-4998999-9578799-9629989994466656698899740899986
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=430.36 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=155.6
Q ss_pred EEEECCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCCCCCCCEEEEECCCCCCCCCC
Q ss_conf 7731417777278-----19999746999757799747089878738899999590278001131588852689889997
Q 000612 882 VLLNGVSGAFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGYPKKQETFARISGYCEQNDIHSPFV 956 (1391)
Q Consensus 882 ~iL~~is~~i~~G-----~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 956 (1391)
..++++++.+++| |+++|+|+||||||||+++|+|...+ .+|+. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p--~~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKP--DEGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCC--SBCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCC--CCCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 44686589970685146518999888898699999999657878--78858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCC
Q ss_conf 58889999887207999998899999999999839964222223698877779989999999999851997889939999
Q 000612 957 TIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPLRQSLVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1036 (1391)
Q Consensus 957 TV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~gLSgGqrkRlsIa~~L~~~p~illLDEPTs 1036 (1391)
||+|.+... .+. ... ....++++++.++|.+..+..+ ..||||||||++||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~--~~~---~~~~~~~~l~~l~l~~~~~~~~-----~~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRG--QFL---NPQFQTDVVKPLRIDDIIDQEV-----QHLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSS--TTT---SHHHHHHTHHHHTSTTTSSSBS-----SSCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHC--CCC---CHHHHHHHHHHCCCHHHHCCCH-----HHCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--530--324---6899999998749834651993-----2389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHCCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999987-38988999926877899974285989925-949999669987502689998719
Q 000612 1037 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELFLMKR-GGQEIYVGPLGRHSCHLISYFEAI 1107 (1391)
Q Consensus 1037 gLD~~s~~~i~~~l~~~~-~~g~tii~t~Hqps~~i~~~fD~llll~~-gG~~vy~G~~g~~~~~~~~yF~~~ 1107 (1391)
|||..+...+++.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+.+..|++.+--.....+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=372.16 Aligned_cols=214 Identities=28% Similarity=0.398 Sum_probs=180.2
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 81458821166860511345505456752773141777727819999746999757799747089878738899999590
Q 000612 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1391)
Q Consensus 853 ~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~ 932 (1391)
...++|+|++++++..+ ...+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|+|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~~----------~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSRP----------DVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSST----------TSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCCC----------CCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 87679998554079999----------8743333188622882789980589857788887545651--64486157996
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCC-------CCCCCCCC
Q ss_conf 2780---0113158885268988999758889999887207999998899999999999839964-------22222369
Q 000612 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNP-------LRQSLVGL 1002 (1391)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~-------~~~~~vg~ 1002 (1391)
+++. ..+++.++||+|++.++. -|++|++.|+. ++.+++ .+.++++..++.+ -.++.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf~-~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALFN-CTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCCS-EEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEEC-CCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 5011259998504666587533207-86167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 88777799899999999998519978899399999999999999999999873898899992687789997428598992
Q 000612 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1391)
Q Consensus 1003 ~~~~gLSgGqrkRlsIa~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tii~t~Hqps~~i~~~fD~llll~ 1082 (1391)
.| ..||||||||++|||+++++|+|++||||||+||+.++..+.+.++++. +|+|+|+++|+++. ...+|++++|+
T Consensus 551 ~G-~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls~--i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RG-TQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLST--IRNADLIISCK 626 (1321)
T ss_dssp SS-CCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTTT--TTTCSEEEEEE
T ss_pred CC-CCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHHH--HHHCCEEEEEE
T ss_conf 98-8777778799999998725999899845544688789999999999984-79889997363878--98689899963
Q ss_pred CCCEEEEECCC
Q ss_conf 59499996699
Q 000612 1083 RGGQEIYVGPL 1093 (1391)
Q Consensus 1083 ~gG~~vy~G~~ 1093 (1391)
+ |+++..|+.
T Consensus 627 ~-G~ive~Gth 636 (1321)
T 4f4c_A 627 N-GQVVEVGDH 636 (1321)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEECCCCH
T ss_conf 9-965136899
No 10
>4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A
Probab=1.00 E-value=1 Score=339.44 Aligned_cols=213 Identities=24% Similarity=0.377 Sum_probs=174.3
Q ss_pred CCEEEEECEEEEEECCHHHHHCCCCCCCEEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 81458821166860511345505456752773141777727819999746999757799747089878738899999590
Q 000612 853 PHSLTFDEVVYSVDMPEEMKVQGVLEDKLVLLNGVSGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYITGNITISGY 932 (1391)
Q Consensus 853 ~~~i~~~~v~y~~~~~~~~~~~~~~~~~~~iL~~is~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~~~~~G~I~i~g~ 932 (1391)
+..++++|++++++. +...+|+|+|+.+++|+++||+||||||||||+++|+|... +.+|+|.++|.
T Consensus 337 ~~~i~~~~v~~~y~~-----------~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~--p~~G~i~~~g~ 403 (578)
T 4a82_A 337 QGRIDIDHVSFQYND-----------NEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYD--VTSGQILIDGH 403 (578)
T ss_dssp SCCEEEEEEEECSCS-----------SSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSC--CSEEEEEETTE
T ss_pred CCEEEEEEEEEECCC-----------CCCCCEEEEEEEECCCCEEEEECCCCCHHHHHHHHHHCCCC--CCCCEEEECCE
T ss_conf 880799999997589-----------99741343379987999999989999859999999846788--99967999999
Q ss_pred CCCC---CCCCCEEEEECCCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCC
Q ss_conf 2780---01131588852689889997588899998872079999988999999999998399642-------2222369
Q 000612 933 PKKQ---ETFARISGYCEQNDIHSPFVTIYESLLFSAWLRLSPEVDSETRKMFIDEVMELVELNPL-------RQSLVGL 1002 (1391)
Q Consensus 933 ~~~~---~~~~~~~gyv~Q~d~~~~~lTV~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~ 1002 (1391)
+... ..+++.++||+|+..+++. ||+|++.++. ++.++ +.+.++++..++.+. .++.+|.
T Consensus 404 ~~~~~~~~~~r~~i~~v~Q~~~l~~~-tv~eni~~~~-----~~~~~----~~~~~~~~~~~~~~~~~~lp~g~~t~~~~ 473 (578)
T 4a82_A 404 NIKDFLTGSLRNQIGLVQQDNILFSD-TVKENILLGR-----PTATD----EEVVEAAKMANAHDFIMNLPQGYDTEVGE 473 (578)
T ss_dssp EGGGSCHHHHHHTEEEECSSCCCCSS-BHHHHHGGGC-----SSCCH----HHHHHHHHHTTCHHHHHTSTTGGGCBCCG
T ss_pred EHHHCCHHHHHHHEEEEECCCCCCCC-CHHHHHHCCC-----CCCCH----HHHHHHHHHHCCHHHHHHCCCHHHHHHCC
T ss_conf 84427899996006899289834764-5999985279-----99889----99999998809599997573301025306
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHCCEEEEEE
Q ss_conf 88777799899999999998519978899399999999999999999999873898899992687789997428598992
Q 000612 1003 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELFLMK 1082 (1391)
Q Consensus 1003 ~~~~gLSgGqrkRlsIa~~L~~~p~illLDEPTsgLD~~s~~~i~~~l~~~~~~g~tii~t~Hqps~~i~~~fD~llll~ 1082 (1391)
. ...||||||||++|||+|+.+|++++||||||+||+.++..+.+.++++. .++|+|+++|+++. .+.+|++++|+
T Consensus 474 ~-g~~LSgGq~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~-~~~t~i~itH~l~~--~~~~d~i~~l~ 549 (578)
T 4a82_A 474 R-GVKLSGGQKQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLS-KDRTTLIVAHRLST--ITHADKIVVIE 549 (578)
T ss_dssp G-GTTSCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHT-TTSEEEEECSSGGG--TTTCSEEEEEE
T ss_pred C-CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEECCHHH--HHCCCEEEEEE
T ss_conf 8-89679999999999999974999999978654579999999999999980-89979998317899--97199899998
Q ss_pred CCCEEEEECCC
Q ss_conf 59499996699
Q 000612 1083 RGGQEIYVGPL 1093 (1391)
Q Consensus 1083 ~gG~~vy~G~~ 1093 (1391)
+ |+++..|+.
T Consensus 550 ~-G~i~~~g~~ 559 (578)
T 4a82_A 550 N-GHIVETGTH 559 (578)
T ss_dssp T-TEEEEEECH
T ss_pred C-CEEEEECCH
T ss_conf 9-989998889
Done!