Query 000613
Match_columns 1391
No_of_seqs 182 out of 195
Neff 3.9
Searched_HMMs 46136
Date Mon Apr 1 20:41:29 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000613.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000613hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0196 Tyrosine kinase, EPH ( 96.3 0.0032 7E-08 79.0 4.5 61 807-880 261-331 (996)
2 PF07699 GCC2_GCC3: GCC2 and G 96.1 0.003 6.6E-08 54.1 1.9 27 816-844 9-35 (48)
3 PF10256 Erf4: Golgin subfamil 93.7 0.18 3.8E-06 50.5 6.9 67 980-1046 21-91 (118)
4 PHA02637 TNF-alpha-receptor-li 91.5 0.17 3.8E-06 52.2 3.5 57 808-869 31-92 (127)
5 PF07562 NCD3G: Nine Cysteines 91.4 0.049 1.1E-06 48.2 -0.4 37 806-844 6-52 (54)
6 cd00185 TNFR Tumor necrosis fa 90.9 0.36 7.7E-06 47.1 4.9 66 804-875 12-87 (98)
7 PHA02637 TNF-alpha-receptor-li 82.9 0.93 2E-05 47.0 2.7 41 800-841 38-87 (127)
8 KOG0921 Dosage compensation co 81.9 3.5 7.5E-05 53.9 7.6 37 66-113 1048-1088(1282)
9 PF07699 GCC2_GCC3: GCC2 and G 72.4 3.1 6.7E-05 35.8 2.5 33 801-833 6-43 (48)
10 KOG0921 Dosage compensation co 71.5 8.2 0.00018 50.7 6.8 30 549-582 1122-1151(1282)
11 PTZ00382 Variant-specific surf 65.3 3.4 7.4E-05 41.0 1.5 25 816-843 4-28 (96)
12 cd00185 TNFR Tumor necrosis fa 62.6 7.9 0.00017 37.9 3.4 32 815-846 11-44 (98)
13 PF10256 Erf4: Golgin subfamil 58.8 18 0.0004 36.3 5.4 64 1128-1195 26-114 (118)
14 smart00180 EGF_Lam Laminin-typ 48.6 10 0.00022 32.7 1.4 24 801-827 17-40 (46)
15 cd00055 EGF_Lam Laminin-type e 46.4 11 0.00024 32.7 1.4 27 800-829 17-43 (50)
16 KOG1836 Extracellular matrix g 45.8 19 0.00041 50.8 4.1 43 801-843 794-838 (1705)
17 KOG4069 Uncharacterized conser 45.1 61 0.0013 34.4 6.5 65 979-1047 45-116 (154)
18 PF14946 DUF4501: Domain of un 44.6 66 0.0014 35.3 6.9 38 887-924 83-122 (180)
19 KOG3973 Uncharacterized conser 44.2 95 0.0021 37.6 8.7 6 218-223 412-417 (465)
20 PF15496 DUF4646: Domain of un 42.8 29 0.00064 35.9 4.0 87 953-1055 26-120 (123)
21 PF12273 RCR: Chitin synthesis 42.4 21 0.00046 36.7 2.9 21 892-912 2-23 (130)
22 PF00053 Laminin_EGF: Laminin 37.1 14 0.00031 31.7 0.6 22 809-830 22-43 (49)
23 PF07354 Sp38: Zona-pellucida- 35.6 31 0.00066 40.2 3.1 23 817-842 239-261 (271)
24 PF15496 DUF4646: Domain of un 34.8 49 0.0011 34.3 4.1 51 1129-1179 44-123 (123)
25 KOG4289 Cadherin EGF LAG seven 31.7 37 0.0008 46.9 3.2 29 807-841 1741-1774(2531)
26 KOG4611 Uncharacterized conser 28.3 67 0.0015 38.7 4.3 81 804-888 31-129 (747)
27 cd00064 FU Furin-like repeats. 26.8 48 0.001 28.4 2.1 21 808-828 19-42 (49)
28 COG3290 CitA Signal transducti 24.5 2.8E+02 0.0061 35.6 8.7 103 931-1049 259-371 (537)
29 KOG3973 Uncharacterized conser 23.1 3E+02 0.0065 33.6 8.2 7 443-449 233-239 (465)
30 KOG4260 Uncharacterized conser 23.0 54 0.0012 38.5 2.2 24 808-831 131-154 (350)
31 PF07662 Nucleos_tra2_C: Na+ d 22.7 98 0.0021 35.1 4.1 36 993-1028 67-107 (210)
32 PF05268 GP38: Phage tail fibr 22.3 1.6E+02 0.0034 33.9 5.5 38 218-256 113-152 (260)
33 KOG4260 Uncharacterized conser 22.2 46 0.001 39.0 1.5 45 795-842 161-205 (350)
34 PF05268 GP38: Phage tail fibr 21.1 1.6E+02 0.0035 33.9 5.2 8 364-371 245-252 (260)
No 1
>KOG0196 consensus Tyrosine kinase, EPH (ephrin) receptor family [Signal transduction mechanisms]
Probab=96.34 E-value=0.0032 Score=79.02 Aligned_cols=61 Identities=36% Similarity=0.805 Sum_probs=44.8
Q ss_pred CCCCCCcc----cccceeCCCCcccccCCCCCCCcccCCCCCCCCcceeEeecCCccCCCCCccccCCCcCC------Cc
Q 000613 807 KACPKGLY----GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCISERYHM------PH 876 (1391)
Q Consensus 807 ~~CP~Gly----G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~i~v~gG~~~~~Cpy~C~s~~~~~------p~ 876 (1391)
=-|-+||. |.-|+.||.||||...+ ..+|.+||.+.... -...+.|. |..++|+. -.
T Consensus 261 C~C~aGye~~~~~~~C~aCp~G~yK~~~~--~~~C~~CP~~S~s~---------~ega~~C~--C~~gyyRA~~Dp~~mp 327 (996)
T KOG0196|consen 261 CVCKAGYEEAENGKACQACPPGTYKASQG--DSLCLPCPPNSHSS---------SEGATSCT--CENGYYRADSDPPSMP 327 (996)
T ss_pred eeecCCCCcccCCCcceeCCCCcccCCCC--CCCCCCCCCCCCCC---------CCCCCccc--ccCCcccCCCCCCCCC
Confidence 45888883 67799999999999875 47899999865322 12357786 99999974 24
Q ss_pred ccch
Q 000613 877 CYTA 880 (1391)
Q Consensus 877 C~Tp 880 (1391)
|.+|
T Consensus 328 CT~P 331 (996)
T KOG0196|consen 328 CTRP 331 (996)
T ss_pred CCCC
Confidence 7665
No 2
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=96.11 E-value=0.003 Score=54.05 Aligned_cols=27 Identities=41% Similarity=1.038 Sum_probs=23.2
Q ss_pred ccceeCCCCcccccCCCCCCCcccCCCCC
Q 000613 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1391)
Q Consensus 816 ~fC~eCP~GtYKn~sGs~~~lC~pCp~~~ 844 (1391)
.-|++||.||||+..|+. .|.+||.+.
T Consensus 9 ~~C~~Cp~GtYq~~~g~~--~C~~Cp~g~ 35 (48)
T PF07699_consen 9 NKCQPCPKGTYQDEEGQT--SCTPCPPGS 35 (48)
T ss_pred CccCCCCCCccCCccCCc--cCccCcCCC
Confidence 359999999999999864 799999753
No 3
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=93.74 E-value=0.18 Score=50.50 Aligned_cols=67 Identities=22% Similarity=0.341 Sum_probs=46.5
Q ss_pred CCcchhhhhhchhHHHHHHHHHHhhhhhh--h--hhhHHHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHH
Q 000613 980 TPPEQIKEIVYEGAFNSFVDEINAIATYH--W--WEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVR 1046 (1391)
Q Consensus 980 spP~~i~~IVyed~F~~Fad~iN~laay~--~--We~~iy~ILsvl~YPlaw~w~q~rRrkk~~rL~e~v~ 1046 (1391)
.-|.++...+.+++|++++++||+.++=. . |.-++-.+|.++..=+..++.....||++++|.+|+.
T Consensus 21 ~~P~~L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~ 91 (118)
T PF10256_consen 21 EYPGELSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLE 91 (118)
T ss_pred cCCHhhcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788999999999999999999987322 1 4455555566654222222233456778899999997
No 4
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=91.46 E-value=0.17 Score=52.18 Aligned_cols=57 Identities=26% Similarity=0.593 Sum_probs=38.2
Q ss_pred CCCCCcc---cccceeCCCCcccccCC--CCCCCcccCCCCCCCCcceeEeecCCccCCCCCccccC
Q 000613 808 ACPKGLY---GIFCEECPVGTYKNVTG--SDKSLCHQCPPQEFPHRAVYISVRGGIAETPCPYRCIS 869 (1391)
Q Consensus 808 ~CP~Gly---G~fC~eCP~GtYKn~sG--s~~~lC~pCp~~~~p~ra~~i~v~gG~~~~~Cpy~C~s 869 (1391)
.|..+-| +.-|.+||+|||+..-= .....|.|||.+++....++.. ....|.-.|++
T Consensus 31 ~C~e~EY~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~~~-----~C~~C~~~Cd~ 92 (127)
T PHA02637 31 KCKDNEYKRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNHLP-----ACLSCNGRCDR 92 (127)
T ss_pred CCCCCcCcCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCCCC-----cccccCCccCc
Confidence 6888865 44499999999987211 1235899999877655444432 25677777876
No 5
>PF07562 NCD3G: Nine Cysteines Domain of family 3 GPCR; InterPro: IPR011500 G-protein-coupled receptors, GPCRs, constitute a vast protein family that encompasses a wide range of functions (including various autocrine, paracrine and endocrine processes). They show considerable diversity at the sequence level, on the basis of which they can be separated into distinct groups. We use the term clan to describe the GPCRs, as they embrace a group of families for which there are indications of evolutionary relationship, but between which there is no statistically significant similarity in sequence []. The currently known clan members include the rhodopsin-like GPCRs, the secretin-like GPCRs, the cAMP receptors, the fungal mating pheromone receptors, and the metabotropic glutamate receptor family. There is a specialised database for GPCRs (http://www.gpcr.org/7tm/). GPCR family 3 receptors (also known as family C) are structurally similar to other GPCRs, but do not show any significant sequence similarity and thus represent a distinct group. Structurally they are composed of four elements; an N-terminal signal sequence; a large hydrophilic extracellular agonist-binding region containing several conserved cysteine residues which could be involved in disulphide bonds; a shorter region containing seven transmembrane domains; and a C-terminal cytoplasmic domain of variable length []. Family 3 members include the metabotropic glutamate receptors, the extracellular calcium-sensing receptors, the gamma-amino-butyric acid (GABA) type B receptors, and the vomeronasal type-2 receptors [, , , ]. As these receptors regulate many important physiological processes they are potentially promising targets for drug development. This entry represents a conserved sequence, found in the extracellular region, that contains several highly-conserved Cys residues that are predicted to form disulphide bridges.; GO: 0004930 G-protein coupled receptor activity, 0007186 G-protein coupled receptor protein signaling pathway; PDB: 2E4X_B 2E4Y_A 2E4U_B 2E4V_B 2E4W_A.
Probab=91.40 E-value=0.049 Score=48.18 Aligned_cols=37 Identities=32% Similarity=0.761 Sum_probs=20.5
Q ss_pred CCCCCCCcccc----------cceeCCCCcccccCCCCCCCcccCCCCC
Q 000613 806 GKACPKGLYGI----------FCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1391)
Q Consensus 806 g~~CP~GlyG~----------fC~eCP~GtYKn~sGs~~~lC~pCp~~~ 844 (1391)
.++|++|++-. -|++||.|+|.|.+. ...|.+||.+.
T Consensus 6 S~~C~pG~~k~~~~~~~~CCw~C~~C~~~~is~~~~--~~~C~~C~~~~ 52 (54)
T PF07562_consen 6 SEPCPPGQRKKIQKGQPSCCWDCVPCPEGEISNQTD--STSCTKCPEGQ 52 (54)
T ss_dssp S----TTTEEEE--SSS-S--EEEE--TTEEEE--E--TTEEEE--TTE
T ss_pred CCCCCCCCEECccCCCcceEEEeecCCCCcEECCCC--ccccccCCCcc
Confidence 47899998532 299999999999874 46899999753
No 6
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=90.91 E-value=0.36 Score=47.13 Aligned_cols=66 Identities=26% Similarity=0.563 Sum_probs=41.6
Q ss_pred EECCCCCCCcc---------cccceeCCCCcccccCCCCCCCcccCCCCCCCCcceeEeecC-CccCCCCCccccCCCcC
Q 000613 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRG-GIAETPCPYRCISERYH 873 (1391)
Q Consensus 804 i~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp~~~~p~ra~~i~v~g-G~~~~~Cpy~C~s~~~~ 873 (1391)
.-=+.||+|++ ..-|++||.|||...... ...|++|+. -+ ....+.... -.+.+.|- |.+++|-
T Consensus 12 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys~~~~~-~~~C~~c~~--C~-~g~~~~~~ct~t~dt~C~--C~~G~y~ 85 (98)
T cd00185 12 LCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYTDSWNH-LPKCLSCRT--CD-SGLVEKAPCTATRNTVCG--CKPGFYC 85 (98)
T ss_pred CCCCCCCCCccCCCcCCCCCCCeecCCCCCCcccCCCC-CCcCCcCcc--CC-CCCEEEccCCCCCCCeEe--CCCCCEe
Confidence 45578999985 356999999999987653 246777764 22 122333222 23345675 8888885
Q ss_pred CC
Q 000613 874 MP 875 (1391)
Q Consensus 874 ~p 875 (1391)
..
T Consensus 86 ~~ 87 (98)
T cd00185 86 LT 87 (98)
T ss_pred cC
Confidence 44
No 7
>PHA02637 TNF-alpha-receptor-like protein; Provisional
Probab=82.89 E-value=0.93 Score=47.04 Aligned_cols=41 Identities=24% Similarity=0.617 Sum_probs=30.9
Q ss_pred CCceEECCCCCCCcc---------cccceeCCCCcccccCCCCCCCcccCC
Q 000613 800 ENGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCP 841 (1391)
Q Consensus 800 ~nGTi~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~lC~pCp 841 (1391)
..+..-=+.||+|+| ..-|.+||.|||-..... ...|..|.
T Consensus 38 ~~~~~CC~kCPPGt~v~~~Ct~~t~T~C~PCp~GTYTe~~N~-~~~C~~C~ 87 (127)
T PHA02637 38 KRHNLCCLSCPPGTYASRLCDIKTNTQCTPCGSGTFTSHNNH-LPACLSCN 87 (127)
T ss_pred cCCCeEcCCCCCCCEEeCcCCCCCCcccccCCCCCeeccCCC-CCcccccC
Confidence 456667789999985 667999999999775553 24677776
No 8
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=81.90 E-value=3.5 Score=53.88 Aligned_cols=37 Identities=27% Similarity=0.467 Sum_probs=19.9
Q ss_pred CCcccccccCCCccCCCCeEEEeeeeec----CCCeEEEeeceEEEecCceE
Q 000613 66 PPSVSCTDDLDGIGTLDSTCQIVNDLNL----TRDVYICGKGNFEILTGVKF 113 (1391)
Q Consensus 66 ~~s~~C~~dl~g~Gs~~t~C~l~~~~~l----~~~~~i~g~G~l~i~~gv~l 113 (1391)
-.++||.. -.+.+++.| .+-|-..|.|-+.|++=.+|
T Consensus 1048 TRAIS~K~-----------MslVsPLQLLLF~SrKVqsdgq~IV~VDdWIkl 1088 (1282)
T KOG0921|consen 1048 TRAISCKQ-----------MSLVSPLQLLLFGSRKVQSDGQGIVRVDDWIKL 1088 (1282)
T ss_pred hheecccC-----------ccccChHHHhhhhhhhccccCcceEEeeceeeE
Confidence 34777871 234555444 33455566665666655544
No 9
>PF07699 GCC2_GCC3: GCC2 and GCC3; InterPro: IPR011641 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. Tyrosine-protein kinases can transfer a phosphate group from ATP to a tyrosine residue in a protein. These enzymes can be divided into two main groups []: Receptor tyrosine kinases (RTK), which are transmembrane proteins involved in signal transduction; they play key roles in growth, differentiation, metabolism, adhesion, motility, death and oncogenesis []. RTKs are composed of 3 domains: an extracellular domain (binds ligand), a transmembrane (TM) domain, and an intracellular catalytic domain (phosphorylates substrate). The TM domain plays an important role in the dimerisation process necessary for signal transduction []. Cytoplasmic / non-receptor tyrosine kinases, which act as regulatory proteins, playing key roles in cell differentiation, motility, proliferation, and survival. For example, the Src-family of protein-tyrosine kinases []. This entry represents various ephrin type A and B receptors, which have tyrosine kinase activity.
Probab=72.38 E-value=3.1 Score=35.82 Aligned_cols=33 Identities=39% Similarity=0.910 Sum_probs=24.6
Q ss_pred CceEECCCCCCCcc----c-ccceeCCCCcccccCCCC
Q 000613 801 NGTTTGKACPKGLY----G-IFCEECPVGTYKNVTGSD 833 (1391)
Q Consensus 801 nGTi~g~~CP~Gly----G-~fC~eCP~GtYKn~sGs~ 833 (1391)
.+.-.=.+||.|.| | ..|+.||.|+|-...|+.
T Consensus 6 ~~~~~C~~Cp~GtYq~~~g~~~C~~Cp~g~~T~~~Gs~ 43 (48)
T PF07699_consen 6 SGNNKCQPCPKGTYQDEEGQTSCTPCPPGSTTSSEGST 43 (48)
T ss_pred CCCCccCCCCCCccCCccCCccCccCcCCCccCCcCCc
Confidence 34445589999987 4 349999999987766653
No 10
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=71.50 E-value=8.2 Score=50.75 Aligned_cols=30 Identities=20% Similarity=0.204 Sum_probs=15.5
Q ss_pred cCCCCCccccccccEEEEEEEEEeeeeeeEEEec
Q 000613 549 LHPPEDCNVNSSLSFTLQICRVEDIVVDGLVEGS 582 (1391)
Q Consensus 549 ~~ppedc~~n~sl~ftLqi~rVed~tv~G~I~GS 582 (1391)
|.|+..-.+|.-. ||||-+-..++..|.-+
T Consensus 1122 LdpvnarllnmiR----dIs~pSAa~inLmig~~ 1151 (1282)
T KOG0921|consen 1122 LDPVNARLLNMIR----DISRPSAADINLMIGDS 1151 (1282)
T ss_pred cCchhHHHHHHHH----HhcccccccccceeccC
Confidence 5666555555432 45555555555555544
No 11
>PTZ00382 Variant-specific surface protein (VSP); Provisional
Probab=65.32 E-value=3.4 Score=40.95 Aligned_cols=25 Identities=28% Similarity=0.557 Sum_probs=18.9
Q ss_pred ccceeCCCCcccccCCCCCCCcccCCCC
Q 000613 816 IFCEECPVGTYKNVTGSDKSLCHQCPPQ 843 (1391)
Q Consensus 816 ~fC~eCP~GtYKn~sGs~~~lC~pCp~~ 843 (1391)
..|.+|..|+|++..+ ..|.+|+.+
T Consensus 4 ~~Ct~C~~g~~~~~~~---~~C~~C~~~ 28 (96)
T PTZ00382 4 AVCTSCDSDKKPNKDG---SGCVLCSVG 28 (96)
T ss_pred cccCcCCCCCccCCCC---CcCCcCCCC
Confidence 4689999999888543 468888853
No 12
>cd00185 TNFR Tumor necrosis factor receptor (TNFR) domain; superfamily of TNF-like receptor domains. When bound to TNF-like cytokines, TNFRs trigger multiple signal transduction pathways, they are involved in inflammation response, apoptosis, autoimmunity and organogenesis. TNFRs domains are elongated with generally three tandem repeats of cysteine-rich domains (CRDs). They fit in the grooves between protomers within the ligand trimer. Some TNFRs, such as NGFR and HveA, bind ligands with no structural similarity to TNF and do not bind ligand trimers.
Probab=62.57 E-value=7.9 Score=37.93 Aligned_cols=32 Identities=34% Similarity=1.062 Sum_probs=23.5
Q ss_pred cccceeCCCCcccccCCC--CCCCcccCCCCCCC
Q 000613 815 GIFCEECPVGTYKNVTGS--DKSLCHQCPPQEFP 846 (1391)
Q Consensus 815 G~fC~eCP~GtYKn~sGs--~~~lC~pCp~~~~p 846 (1391)
+.-|..||+|+|-..... ....|.|||.+.+.
T Consensus 11 ~~cC~~C~pG~~~~~~C~~~~~t~C~~C~~g~ys 44 (98)
T cd00185 11 GLCCDQCPPGTYLSKDCTPGSDTVCEPCPPGTYT 44 (98)
T ss_pred CCCCCCCCCCccCCCcCCCCCCCeecCCCCCCcc
Confidence 455999999999775422 23689999986653
No 13
>PF10256 Erf4: Golgin subfamily A member 7/ERF4 family; InterPro: IPR019383 Proteins in this entry include Golgin subfamily A member 7 and the Ras modification protein ERF4.
Probab=58.80 E-value=18 Score=36.29 Aligned_cols=64 Identities=16% Similarity=0.326 Sum_probs=46.0
Q ss_pred hcccCChhHHHHHHHHHHHHHHhh-hcc------------------------ccchhHHHHHHHHHHhcCcccccCCeEE
Q 000613 1128 MSQLVPPTICYRLVAGLNAQLRLV-RRG------------------------RLRATFRPVLRWLETHANPTLQLHGLRV 1182 (1391)
Q Consensus 1128 ~~q~v~~~~w~rfVa~LN~qlR~v-~~g------------------------~lr~~l~~v~~~le~h~n~~l~~~Gvrv 1182 (1391)
++..++++.|.++|..+|..|+.- ..- .-+..+..+-+||++.|++.++.+|+++
T Consensus 26 L~~~is~~ef~~iI~~IN~~l~~a~~~~~~~~~~~~~l~~lt~~l~~~~~~~~~~~~~~~le~~l~~~N~~~~~~~gi~i 105 (118)
T PF10256_consen 26 LSGYISPEEFEEIINTINQILKEAFEPISWRNIIENILGCLTLGLSSLCFKTHYKRKLRELEKYLEQLNEELFKPRGIKI 105 (118)
T ss_pred hcCCCCHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCcEE
Confidence 566789999999999999999877 321 1223445567799888888999999865
Q ss_pred EEEEEEeecceeE
Q 000613 1183 DLAWFQATACGYC 1195 (1391)
Q Consensus 1183 ~L~~fqat~~g~~ 1195 (1391)
- -.-.+||-
T Consensus 106 i----~pr~~g~l 114 (118)
T PF10256_consen 106 I----SPRRSGYL 114 (118)
T ss_pred E----chhHceEE
Confidence 3 23355553
No 14
>smart00180 EGF_Lam Laminin-type epidermal growth factor-like domai.
Probab=48.62 E-value=10 Score=32.70 Aligned_cols=24 Identities=29% Similarity=0.753 Sum_probs=20.3
Q ss_pred CceEECCCCCCCcccccceeCCCCccc
Q 000613 801 NGTTTGKACPKGLYGIFCEECPVGTYK 827 (1391)
Q Consensus 801 nGTi~g~~CP~GlyG~fC~eCP~GtYK 827 (1391)
+|.- .|++++.|..|++|+.|+|-
T Consensus 17 ~G~C---~C~~~~~G~~C~~C~~g~~g 40 (46)
T smart00180 17 TGQC---ECKPNVTGRRCDRCAPGYYG 40 (46)
T ss_pred CCEE---ECCCCCCCCCCCcCCCCcCC
Confidence 4554 39999999999999999996
No 15
>cd00055 EGF_Lam Laminin-type epidermal growth factor-like domain; laminins are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation; the laminin-type epidermal growth factor-like module occurs in tandem arrays; the domain contains 4 disulfide bonds (loops a-d) the first three resemble epidermal growth factor (EGF); the number of copies of this domain in the different forms of laminins is highly variable ranging from 3 up to 22 copies
Probab=46.40 E-value=11 Score=32.71 Aligned_cols=27 Identities=26% Similarity=0.562 Sum_probs=22.3
Q ss_pred CCceEECCCCCCCcccccceeCCCCccccc
Q 000613 800 ENGTTTGKACPKGLYGIFCEECPVGTYKNV 829 (1391)
Q Consensus 800 ~nGTi~g~~CP~GlyG~fC~eCP~GtYKn~ 829 (1391)
.+|.- .|++++.|..|++|+.|+|...
T Consensus 17 ~~G~C---~C~~~~~G~~C~~C~~g~~~~~ 43 (50)
T cd00055 17 GTGQC---ECKPNTTGRRCDRCAPGYYGLP 43 (50)
T ss_pred CCCEE---eCCCcCCCCCCCCCCCCCccCC
Confidence 45555 3999999999999999999764
No 16
>KOG1836 consensus Extracellular matrix glycoprotein Laminin subunits alpha and gamma [Extracellular structures]
Probab=45.77 E-value=19 Score=50.75 Aligned_cols=43 Identities=35% Similarity=0.688 Sum_probs=35.9
Q ss_pred CceEECCCCCCCcccccceeCCCCcccccCCCC--CCCcccCCCC
Q 000613 801 NGTTTGKACPKGLYGIFCEECPVGTYKNVTGSD--KSLCHQCPPQ 843 (1391)
Q Consensus 801 nGTi~g~~CP~GlyG~fC~eCP~GtYKn~sGs~--~~lC~pCp~~ 843 (1391)
.-++.-|.||+||.|.-|++|.-|+|=+..+-+ ...|++|+-+
T Consensus 794 ~~~~iCk~Cp~gytG~rCe~c~dgyfg~p~~~~~~~~~c~~c~c~ 838 (1705)
T KOG1836|consen 794 ILEVVCKNCPPGYTGLRCEECADGYFGNPLGHDGDVRPCQSCQCN 838 (1705)
T ss_pred ccceecCCCCCCCcccccccCCCccccCCCCCCCCcccCccceec
Confidence 567777999999999999999999998866533 3689999964
No 17
>KOG4069 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.09 E-value=61 Score=34.40 Aligned_cols=65 Identities=18% Similarity=0.348 Sum_probs=45.6
Q ss_pred CCCcchhhhhhchhHHHHHHHHHHhhhhh-------hhhhhHHHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHh
Q 000613 979 HTPPEQIKEIVYEGAFNSFVDEINAIATY-------HWWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRS 1047 (1391)
Q Consensus 979 ~spP~~i~~IVyed~F~~Fad~iN~laay-------~~We~~iy~ILsvl~YPlaw~w~q~rRrkk~~rL~e~v~s 1047 (1391)
...|..+++.|..+.|+.=+..+|++-|= ..+|+.+= ++.||-.+.--.+ --+||+++|+||+.+
T Consensus 45 ~~~pa~le~~i~R~vfE~Ti~rlN~~yAeAE~~~~qty~Egclg---C~TaY~iy~ctet-hYek~L~klskfl~~ 116 (154)
T KOG4069|consen 45 AEYPARLEEKIPRDVFENTIVRLNRIYAEAEAITPQTYFEGCLG---CFTAYAIYACTET-HYEKKLDKLSKFLNR 116 (154)
T ss_pred ecCcHHHhccCcHHHHHHHHHHHHHHHHHHHhcCCcchHHHHHH---HHHHHHHHHHHHH-HHHHHHHHHHHHHHh
Confidence 35799999999999999999999998532 24565543 4455544333222 345789999999984
No 18
>PF14946 DUF4501: Domain of unknown function (DUF4501)
Probab=44.60 E-value=66 Score=35.32 Aligned_cols=38 Identities=37% Similarity=0.516 Sum_probs=25.6
Q ss_pred HhCCcc-hhHHHHHHHHHHHHHHHHHhhhee-cccCCCCC
Q 000613 887 TFGGPW-LFCLLLVGLLILLALVLSVARMKF-VGVDELPG 924 (1391)
Q Consensus 887 t~GGp~-~F~lll~~llilLalvls~~R~K~-~~~d~~~~ 924 (1391)
.+|||+ ...|||=.|+|-++|++|++-.-| +...++|.
T Consensus 83 ~~g~P~vAASL~LgTffIS~~LilSvA~FFYLKrs~kLP~ 122 (180)
T PF14946_consen 83 HTGGPQVAASLFLGTFFISLGLILSVASFFYLKRSSKLPH 122 (180)
T ss_pred cCCChhHHHHHHHHHHHHHHHHHHHHhhheeecccccCCc
Confidence 389998 555666667777999998876543 33345553
No 19
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=44.24 E-value=95 Score=37.58 Aligned_cols=6 Identities=50% Similarity=1.016 Sum_probs=2.6
Q ss_pred ccccCC
Q 000613 218 WSYGSR 223 (1391)
Q Consensus 218 ~~~GSG 223 (1391)
|.-|||
T Consensus 412 ~~sgsg 417 (465)
T KOG3973|consen 412 WISGSG 417 (465)
T ss_pred eeeccc
Confidence 444444
No 20
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=42.80 E-value=29 Score=35.88 Aligned_cols=87 Identities=16% Similarity=0.273 Sum_probs=58.0
Q ss_pred ccccccceEeEEEecCCCCCCCcccCCCCcchhhhhhchhHHHHHHHHHHhhhhhhhhhhHHHHh------hH--hhhcc
Q 000613 953 AEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYHWWEGAIYSI------LA--ILAYP 1024 (1391)
Q Consensus 953 ~eDl~~HvhRmYf~G~NT~~~PW~Lp~spP~~i~~IVyed~F~~Fad~iN~laay~~We~~iy~I------Ls--vl~YP 1024 (1391)
.+++..+..+||+ |++=...=|.++++.+|.++++.-++..-+|.++-.. +. +..|=
T Consensus 26 s~~l~~gFp~~~~---------------P~~l~~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~ 90 (123)
T PF15496_consen 26 SDSLSSGFPYLYP---------------PPPLASHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYL 90 (123)
T ss_pred CCccccCCCCcCC---------------CchhhhcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhh
Confidence 3455555555555 3333445578999999999999988777666432222 12 33455
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhcCchhhc
Q 000613 1025 LAWSWQQWRRRMKLQRLREYVRSEYDHACLR 1055 (1391)
Q Consensus 1025 law~w~q~rRrkk~~rL~e~v~seydh~~lr 1055 (1391)
.++.....+.+||-.++.++|. ..++.+|+
T Consensus 91 v~~~~~~~~~~~k~~~v~~~i~-~WN~~FF~ 120 (123)
T PF15496_consen 91 VAKAIRKAMKEKKRGEVESTID-QWNEGFFR 120 (123)
T ss_pred hhHhhhhcccccchHHHHHHHH-HHHHHhcc
Confidence 5666677777778888999997 57777774
No 21
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=42.41 E-value=21 Score=36.72 Aligned_cols=21 Identities=33% Similarity=0.844 Sum_probs=9.2
Q ss_pred c-hhHHHHHHHHHHHHHHHHHh
Q 000613 892 W-LFCLLLVGLLILLALVLSVA 912 (1391)
Q Consensus 892 ~-~F~lll~~llilLalvls~~ 912 (1391)
| +|+||+++++|+|+++....
T Consensus 2 W~l~~iii~~i~l~~~~~~~~~ 23 (130)
T PF12273_consen 2 WVLFAIIIVAILLFLFLFYCHN 23 (130)
T ss_pred eeeHHHHHHHHHHHHHHHHHHH
Confidence 5 34444444444444444333
No 22
>PF00053 Laminin_EGF: Laminin EGF-like (Domains III and V); InterPro: IPR002049 Laminins [] are the major noncollagenous components of basement membranes that mediate cell adhesion, growth migration, and differentiation. They are composed of distinct but related alpha, beta and gamma chains. The three chains form a cross-shaped molecule that consist of a long arm and three short globular arms. The long arm consist of a coiled coil structure contributed by all three chains and cross-linked by interchain disulphide bonds. Beside different types of globular domains each subunit contains, in its first half, consecutive repeats of about 60 amino acids in length that include eight conserved cysteines []. The tertiary structure [, ] of this domain is remotely similar in its N-terminal to that of the EGF-like module (see PDOC00021 from PROSITEDOC). It is known as a 'LE' or 'laminin-type EGF-like' domain. The number of copies of the LE domain in the different forms of laminins is highly variable; from 3 up to 22 copies have been found. A schematic representation of the topology of the four disulphide bonds in the LE domain is shown below. +-------------------+ +-|-----------+ | +--------+ +-----------------+ | | | | | | | | xxCxCxxxxxxxxxxxCxxxxxxxCxxCxxxxxGxxCxxCxxgaagxxxxxxxxxxxCxx sssssssssssssssssssssssssssssssssss 'C': conserved cysteine involved in a disulphide bond 'a': conserved aromatic residue 'G': conserved glycine (lower case = less conserved) 's': region similar to the EGF-like domain In mouse laminin gamma-1 chain, the seventh LE domain has been shown to be the only one that binds with a high affinity to nidogen []. The binding-sites are located on the surface within the loops C1-C3 and C5-C6 [, ]. Long consecutive arrays of LE domains in laminins form rod-like elements of limited flexibility [], which determine the spacing in the formation of laminin networks of basement membranes [].; PDB: 3TBD_A 3ZYG_B 3ZYI_B 2Y38_A 1KLO_A 1NPE_B 3ZYJ_B 1TLE_A.
Probab=37.11 E-value=14 Score=31.73 Aligned_cols=22 Identities=27% Similarity=0.680 Sum_probs=18.1
Q ss_pred CCCCcccccceeCCCCcccccC
Q 000613 809 CPKGLYGIFCEECPVGTYKNVT 830 (1391)
Q Consensus 809 CP~GlyG~fC~eCP~GtYKn~s 830 (1391)
|++++.|..|++|..|+|....
T Consensus 22 C~~~~~G~~C~~C~~g~~~~~~ 43 (49)
T PF00053_consen 22 CKPGTTGPRCDQCKPGYFGLPS 43 (49)
T ss_dssp BSTTEESTTS-EE-TTEECSTT
T ss_pred ccccccCCcCcCCCCccccccC
Confidence 9999999999999999997743
No 23
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=35.62 E-value=31 Score=40.24 Aligned_cols=23 Identities=35% Similarity=0.780 Sum_probs=19.7
Q ss_pred cceeCCCCcccccCCCCCCCcccCCC
Q 000613 817 FCEECPVGTYKNVTGSDKSLCHQCPP 842 (1391)
Q Consensus 817 fC~eCP~GtYKn~sGs~~~lC~pCp~ 842 (1391)
=|+-|++|||....+ ..|++|..
T Consensus 239 CCVvCsPgTysp~~~---~~C~~C~~ 261 (271)
T PF07354_consen 239 CCVVCSPGTYSPDDD---VHCQQCNS 261 (271)
T ss_pred eeEECCCcccCCCCC---ceEEecCc
Confidence 499999999988765 58999995
No 24
>PF15496 DUF4646: Domain of unknown function (DUF4646)
Probab=34.82 E-value=49 Score=34.27 Aligned_cols=51 Identities=14% Similarity=0.089 Sum_probs=33.7
Q ss_pred cccCChhHHHHHHHHHHHHHHhhhcccc-----------------------------chhHHHHHHHHHHhcCcccccCC
Q 000613 1129 SQLVPPTICYRLVAGLNAQLRLVRRGRL-----------------------------RATFRPVLRWLETHANPTLQLHG 1179 (1391)
Q Consensus 1129 ~q~v~~~~w~rfVa~LN~qlR~v~~g~l-----------------------------r~~l~~v~~~le~h~n~~l~~~G 1179 (1391)
.-.|..+.|.||+.+|+.--++-...++ ...--.|-+.|+.||+.+|+.-|
T Consensus 44 ~~DVs~eDW~~F~~dl~~aa~ls~~~~~~~~~~~~~~~v~~Gi~~~~v~~~~~~~~~~~k~~~v~~~i~~WN~~FF~PRg 123 (123)
T PF15496_consen 44 SHDVSEEDWTRFLNDLSEAASLSPSQSIVAGVGPIVMGVGFGIPAYLVAKAIRKAMKEKKRGEVESTIDQWNEGFFRPRG 123 (123)
T ss_pred hcCCCHHHHHHHHHHHHHHHhcCcccceeeeeccccccccccchhhhhhHhhhhcccccchHHHHHHHHHHHHHhccCCC
Confidence 3469999999999999998444433322 11222456678888877776543
No 25
>KOG4289 consensus Cadherin EGF LAG seven-pass G-type receptor [Signal transduction mechanisms]
Probab=31.68 E-value=37 Score=46.91 Aligned_cols=29 Identities=38% Similarity=0.962 Sum_probs=23.9
Q ss_pred CCCCCCcccccce-----eCCCCcccccCCCCCCCcccCC
Q 000613 807 KACPKGLYGIFCE-----ECPVGTYKNVTGSDKSLCHQCP 841 (1391)
Q Consensus 807 ~~CP~GlyG~fC~-----eCP~GtYKn~sGs~~~lC~pCp 841 (1391)
-.||+||+|-.|| +||.|.|-+ ..|.||.
T Consensus 1741 C~C~~g~~G~~Ce~~~dq~CPrGWWG~------P~CgpC~ 1774 (2531)
T KOG4289|consen 1741 CECPPGYTGPYCELRADQPCPRGWWGF------PTCGPCN 1774 (2531)
T ss_pred EECCCcccCcchhhhccCCCCCcccCC------CCccCcc
Confidence 6899999999996 899999853 3577775
No 26
>KOG4611 consensus Uncharacterized conserved protein [Function unknown]
Probab=28.34 E-value=67 Score=38.71 Aligned_cols=81 Identities=30% Similarity=0.519 Sum_probs=49.6
Q ss_pred EECCCCCCCc----c-c--ccceeCCCCcccccCCCCCCCcccCCCCC--CCCcceeEeec-CCc---cCCCCCccccCC
Q 000613 804 TTGKACPKGL----Y-G--IFCEECPVGTYKNVTGSDKSLCHQCPPQE--FPHRAVYISVR-GGI---AETPCPYRCISE 870 (1391)
Q Consensus 804 i~g~~CP~Gl----y-G--~fC~eCP~GtYKn~sGs~~~lC~pCp~~~--~p~ra~~i~v~-gG~---~~~~Cpy~C~s~ 870 (1391)
+..-+|.|.- . | .-|+|||.||.... |.--|..|-+.. .|++..-++-. .|. ....|- .|-++
T Consensus 31 mmsckcsknqieifrngfvptceecpegtlssp---dqtgclncnngtchcpsqstlifrdasgnlltndafcg-ncasg 106 (747)
T KOG4611|consen 31 MMSCKCSKNQIEIFRNGFVPTCEECPEGTLSSP---DQTGCLNCNNGTCHCPSQSTLIFRDASGNLLTNDAFCG-NCASG 106 (747)
T ss_pred ceecccccchhhHhhcCCCCccccCCCcccCCC---ccCCceecCCCccCCCCcceEEEEcCCCCeeccccccc-ccccc
Confidence 4455677663 1 2 23999999998664 334588887764 35555555432 121 223564 68899
Q ss_pred CcCC-----CcccchHHHHHHHh
Q 000613 871 RYHM-----PHCYTALEELIYTF 888 (1391)
Q Consensus 871 ~~~~-----p~C~TpleelI~t~ 888 (1391)
+|+. ..|-|...|.--|.
T Consensus 107 fyrndngyctkcetscsemnstn 129 (747)
T KOG4611|consen 107 FYRNDNGYCTKCETSCSEMNSTN 129 (747)
T ss_pred ceECCCcccccccccHhhhcCCC
Confidence 9975 56777777664433
No 27
>cd00064 FU Furin-like repeats. Cysteine rich region. Exact function of the domain is not known. Furin is a serine-kinase dependent proprotein processor. Other members of this family include endoproteases and cell surface receptors.
Probab=26.83 E-value=48 Score=28.39 Aligned_cols=21 Identities=48% Similarity=1.064 Sum_probs=9.4
Q ss_pred CCCCCc--ccccce-eCCCCcccc
Q 000613 808 ACPKGL--YGIFCE-ECPVGTYKN 828 (1391)
Q Consensus 808 ~CP~Gl--yG~fC~-eCP~GtYKn 828 (1391)
.|++++ .+..|+ +||.++|.+
T Consensus 19 ~C~~~~~~~~~~Cv~~C~~~~~~~ 42 (49)
T cd00064 19 SCRHGFYLDGGTCVSECPEGTYAD 42 (49)
T ss_pred cCcCccCCCCCcccccCCCCceec
Confidence 444444 233344 445444443
No 28
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Probab=24.46 E-value=2.8e+02 Score=35.58 Aligned_cols=103 Identities=18% Similarity=0.253 Sum_probs=58.7
Q ss_pred CccccCccccchhhHHhhcccc--ccccccceEeEEEecCCCCCCCcccCCCCcchhhhhhchhHHHHHHHHHHhhhhhh
Q 000613 931 GSQIDHSFPFLESLNEVLETNR--AEESHSHVHRMYFMGPNTFSQPWHLPHTPPEQIKEIVYEGAFNSFVDEINAIATYH 1008 (1391)
Q Consensus 931 ~~~~D~sfp~l~SL~Ev~~~~r--~eDl~~HvhRmYf~G~NT~~~PW~Lp~spP~~i~~IVyed~F~~Fad~iN~laay~ 1008 (1391)
+..+.+-+|+-.-|.||+++.. .++..+|--|.++.= +.|-.....+=-.+.-+-+.++.++.+++.-.+-.|-
T Consensus 259 g~~i~~v~~p~~~l~~vl~~~~~~~~~e~~~ng~~~i~n----r~pI~~~~~~~GaI~tFRdktei~~L~eqLt~vr~ya 334 (537)
T COG3290 259 GRSIVEVLPPDSDLPEVLETGKPQHDEEIRINGRLLVAN----RVPIRSGGQIVGAIITFRDKTEIKKLTEQLTGVRQYA 334 (537)
T ss_pred cccceEeeccccCcHHHHhcCCcccchhhhcCCeEEEEE----eccEEECCEEeEEEEEEecHHHHHHHHHHHHHHHHHH
Confidence 5555566553334666655542 345555666666652 3566665555555566668888888888876666552
Q ss_pred --------hhhhHHHHhhHhhhcchhHHHHHHHHHHHHHHHHHHHHhhc
Q 000613 1009 --------WWEGAIYSILAILAYPLAWSWQQWRRRMKLQRLREYVRSEY 1049 (1391)
Q Consensus 1009 --------~We~~iy~ILsvl~YPlaw~w~q~rRrkk~~rL~e~v~sey 1049 (1391)
-+-..+|.|+-.+ +-++|+++++|++++.
T Consensus 335 ~aLRaq~HEfmNkLhtI~GLl------------ql~~yd~a~~~I~~~~ 371 (537)
T COG3290 335 EALRAQSHEFMNKLHTILGLL------------QLGEYDDALDYIQQES 371 (537)
T ss_pred HHHHHhhHHHHHHHHHHHHHH------------hhccHHHHHHHHHHHH
Confidence 2444466665544 3445555555555333
No 29
>KOG3973 consensus Uncharacterized conserved glycine-rich protein [Function unknown]
Probab=23.08 E-value=3e+02 Score=33.63 Aligned_cols=7 Identities=14% Similarity=0.928 Sum_probs=3.4
Q ss_pred eccceEE
Q 000613 443 MWNSEML 449 (1391)
Q Consensus 443 mw~s~~~ 449 (1391)
.|+-+|.
T Consensus 233 ~Wsdr~k 239 (465)
T KOG3973|consen 233 LWSDRLK 239 (465)
T ss_pred cccHHHH
Confidence 4555444
No 30
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.97 E-value=54 Score=38.50 Aligned_cols=24 Identities=42% Similarity=0.978 Sum_probs=19.1
Q ss_pred CCCCCcccccceeCCCCcccccCC
Q 000613 808 ACPKGLYGIFCEECPVGTYKNVTG 831 (1391)
Q Consensus 808 ~CP~GlyG~fC~eCP~GtYKn~sG 831 (1391)
-||+|.||.-|..||-|+=+.-+|
T Consensus 131 CCp~gtyGpdCl~Cpggser~C~G 154 (350)
T KOG4260|consen 131 CCPDGTYGPDCLQCPGGSERPCFG 154 (350)
T ss_pred ccCCCCcCCccccCCCCCcCCcCC
Confidence 589999999999999888665443
No 31
>PF07662 Nucleos_tra2_C: Na+ dependent nucleoside transporter C-terminus; InterPro: IPR011657 This entry consists of nucleoside transport proteins. Q62773 from SWISSPROT is a purine-specific Na+-nucleoside cotransporter localised to the bile canalicular membrane []. Q62674 from SWISSPROT is a Na+-dependent nucleoside transporter selective for pyrimidine nucleosides and adenosine. It also transports the anti-viral nucleoside analogues AZT and ddC []. This entry covers the C terminus of this family of transporters.; PDB: 3TIJ_A.
Probab=22.74 E-value=98 Score=35.13 Aligned_cols=36 Identities=25% Similarity=0.489 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhhhhhh--hhh---hHHHHhhHhhhcchhHH
Q 000613 993 AFNSFVDEINAIATYH--WWE---GAIYSILAILAYPLAWS 1028 (1391)
Q Consensus 993 ~F~~Fad~iN~laay~--~We---~~iy~ILsvl~YPlaw~ 1028 (1391)
.|-.++.-+|.+..|= ||. .++-.||.+++||++|.
T Consensus 67 afvalial~N~~l~~ig~~~g~~~lsl~~ilGyif~P~awl 107 (210)
T PF07662_consen 67 AFVALIALLNGVLGWIGSLFGIEGLSLQQILGYIFSPLAWL 107 (210)
T ss_dssp HHHHHHHHHHHHHHHHHGGGT-TT--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhcCCccccHHHHHhhhhhHHHHH
Confidence 6888888999998774 333 57778899999999998
No 32
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=22.31 E-value=1.6e+02 Score=33.92 Aligned_cols=38 Identities=29% Similarity=0.432 Sum_probs=22.0
Q ss_pred ccccCCCCCCCCCCCCCcccccEEEEEEeeeeee--ccEEE
Q 000613 218 WSYGSRGGTTSQEFDYGGGGGGRIKMVIDEYVVL--DGSIS 256 (1391)
Q Consensus 218 ~~~GSGGG~g~~~~~~GGaGGG~I~i~a~~~l~l--~G~i~ 256 (1391)
..+|-||- ++.+...+.+||=+|+=.....|++ +|.|.
T Consensus 113 t~yGRGGn-Gs~~~~~g~~GG~~I~N~iG~rLRI~N~GaIA 152 (260)
T PF05268_consen 113 TMYGRGGN-GSGSNSAGAAGGHAIQNDIGGRLRINNNGAIA 152 (260)
T ss_pred EEEecCCC-CCCCCCCccccceeeecCCcceEEEecCCEEe
Confidence 34566553 3444567888888887444444444 45554
No 33
>KOG4260 consensus Uncharacterized conserved protein [Function unknown]
Probab=22.17 E-value=46 Score=39.04 Aligned_cols=45 Identities=18% Similarity=0.523 Sum_probs=32.8
Q ss_pred CCCcCCCceEECCCCCCCcccccceeCCCCcccccCCCCCCCcccCCC
Q 000613 795 ELGGGENGTTTGKACPKGLYGIFCEECPVGTYKNVTGSDKSLCHQCPP 842 (1391)
Q Consensus 795 ~g~~g~nGTi~g~~CP~GlyG~fC~eCP~GtYKn~sGs~~~lC~pCp~ 842 (1391)
+|-...+|. =.|.+||.|..|.+|..++|...-.-....|+.|..
T Consensus 161 dGsR~GsGk---CkC~~GY~Gp~C~~Cg~eyfes~Rne~~lvCt~Ch~ 205 (350)
T KOG4260|consen 161 DGSREGSGK---CKCETGYTGPLCRYCGIEYFESSRNEQHLVCTACHE 205 (350)
T ss_pred CCCCCCCCc---ccccCCCCCccccccchHHHHhhcccccchhhhhhh
Confidence 444444444 379999999999999999997644444467777764
No 34
>PF05268 GP38: Phage tail fibre adhesin Gp38; InterPro: IPR007932 This entry is represented by Bacteriophage T2, Gp38. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This family contains several Gp38 proteins from T-even-like phages. Gp38, together with a second phage protein, Gp57, catalyses the organisation of Gp37 but is absent from the phage particle. Gp37 is responsible for receptor recognition [].
Probab=21.06 E-value=1.6e+02 Score=33.91 Aligned_cols=8 Identities=63% Similarity=1.302 Sum_probs=5.4
Q ss_pred CCceeeEE
Q 000613 364 NQPLWTNV 371 (1391)
Q Consensus 364 ~~~lw~nv 371 (1391)
..|+|.||
T Consensus 245 ~aPtW~~v 252 (260)
T PF05268_consen 245 NAPTWQNV 252 (260)
T ss_pred CCCccccc
Confidence 46777775
Done!