Query 000613
Match_columns 1391
No_of_seqs 191 out of 195
Neff 3.9
Searched_HMMs 29240
Date Tue Mar 26 17:49:26 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000613.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_384-388//hhsearch_pdb/000613hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fl7_A Ephrin receptor; ATP-bi 1.0 1 1 42.8 4.2 36 807-844 265-302 (536)
2 2e4u_A Metabotropic glutamate 1.0 1 1 36.7 0.1 41 803-847 483-532 (555)
3 3u3p_A Tumor necrosis factor r 1.0 1 1 36.6 3.8 64 805-873 25-98 (313)
4 3me4_A Tumor necrosis factor r 1.0 1 1 35.2 3.9 68 801-873 41-119 (216)
5 1jma_B Herpesvirus entry media 1.0 1 1 34.7 4.1 66 804-874 14-90 (167)
6 2uwi_A CRME protein; receptor, 1.0 1 1 34.4 3.9 64 804-873 15-89 (142)
7 2hey_R Tumor necrosis factor r 1.0 1 1 34.2 3.2 63 806-874 19-92 (146)
8 3k51_B Decoy receptor 3; DCR3, 1.0 1 1 33.5 3.9 63 805-873 21-94 (176)
9 3alq_R Tumor necrosis factor r 1.0 1 1 33.1 3.8 66 804-874 20-95 (173)
10 3tje_F Tumor necrosis factor r 1.0 1 1 33.1 1.4 65 805-874 43-120 (156)
No 1
>3fl7_A Ephrin receptor; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase, glycoprotein; HET: NAG; 2.50A {Homo sapiens} PDB: 2x10_A* 2x11_A 3mx0_A* 3mbw_A*
Probab=1.00 E-value=1 Score=42.79 Aligned_cols=36 Identities=28% Similarity=0.630 Sum_probs=29.4
Q ss_pred CCCCCCCC--CCCCEECCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 78999754--532212899941255799998852389999
Q 000613 807 KACPKGLY--GIFCEECPVGTYKNVTGSDKSLCHQCPPQE 844 (1391)
Q Consensus 807 ~~CP~Gly--G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~ 844 (1391)
=.|.+|+. +.-|+.||.|+||...+ ...|.+||++.
T Consensus 265 C~C~~G~e~~~~~C~aC~~g~~k~~~~--~~~C~~CP~~S 302 (536)
T 3fl7_A 265 CLCQAGYEKVEDACQACSPGFFKFEAS--ESPCLECPEHT 302 (536)
T ss_dssp CEECTTEEEETTEEEECCTTEECCSCC--SSCCEECCSSE
T ss_pred EECCCCCCCCCCEEEECCCCCCCCCCC--CCCCCCCCCCC
T ss_conf 766676446996554258998766678--98500688877
No 2
>2e4u_A Metabotropic glutamate receptor 3; G-protein-coupled receptor, neuron, central nerve system, SI protein; HET: NAG GLU; 2.35A {Rattus norvegicus} PDB: 2e4v_A* 2e4w_A* 2e4x_A* 2e4y_A*
Probab=1.00 E-value=1 Score=36.66 Aligned_cols=41 Identities=22% Similarity=0.570 Sum_probs=30.2
Q ss_pred EEECCCCCCCCCC---------CCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC
Q ss_conf 1877789997545---------32212899941255799998852389999888
Q 000613 803 TTTGKACPKGLYG---------IFCEECPVGTYKNVTGSDKSLCHQCPPQEFPH 847 (1391)
Q Consensus 803 Ti~g~~CP~GlyG---------~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ 847 (1391)
++-...||||+.. +-|.+||.|.+. + |...|.+||.++.|+
T Consensus 483 S~CS~~C~pG~rk~~~~g~~CC~~C~~C~~~~~~--t--d~~~C~~Cp~~~wpn 532 (555)
T 2e4u_A 483 SQCSDPCAPNEMKNMQPGDVCCWICIPCEPYEYL--V--DEFTCMDCGPGQWPT 532 (555)
T ss_dssp CCSSCCCCTTTEEEECCSSSSCCEEEECCTTEEE--E--ETTEEEECCTTEEEC
T ss_pred EEECCCCCCCEEEEECCCCEEEEECCCCCCCEEC--C--CCCCCEECCCCCCCC
T ss_conf 4317977998055405897368978657775003--7--786644688323769
No 3
>3u3p_A Tumor necrosis factor receptor superfamily member; trigger apoptosis, apoptosis; 2.09A {Homo sapiens} PDB: 3u3q_A 3u3s_A 3u3t_A 3u3v_A 3qo4_A
Probab=1.00 E-value=1 Score=36.58 Aligned_cols=64 Identities=27% Similarity=0.706 Sum_probs=30.6
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 7778999754---------53221289994125579999885238999988860367412-884588887322378757
Q 000613 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR-GGIAETPCPYRCISERYH 873 (1391)
Q Consensus 805 ~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~-gG~~~~~CpY~C~s~~~~ 873 (1391)
-=..||+|.| ..-|++||.|+|...... ...|.+|... ... ..+.... -..+.+.| .|.+++|.
T Consensus 25 CC~~CpPGtyv~~~Ct~~~dt~C~pCp~GtYt~~~N~-~~~C~~C~~~-C~~-g~~~~~~CT~TsDtvC--~C~~G~y~ 98 (313)
T 3u3p_A 25 TCDKCPAGTYVSEHCTNTSLRVCSSCPVGTFTRHENG-IEKCHDCSQP-CPW-PMIEKLPCAALTDREC--TCPPGMFQ 98 (313)
T ss_dssp EEECBCTTEEEEECCBTTBCCEEEECCTTEECCSCBC-CSSCEECCCC-CCT-TCEEEECSBTTBCCEE--ECCTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCC-CCC-CCEEECCCCCCCCCCC--CCCCCCEE
T ss_conf 8889799932667678999974316999856026887-8808144660-478-8778357868888201--47887036
No 4
>3me4_A Tumor necrosis factor receptor superfamily member; RANK, rankl, rankl-RANK complex, tnfsf11, tnfrsf11A, TNF SUP signaling protein; 2.01A {Mus musculus} PDB: 3me2_R 3qbq_B 4giq_R* 3nzy_B
Probab=1.00 E-value=1 Score=35.20 Aligned_cols=68 Identities=16% Similarity=0.281 Sum_probs=41.9
Q ss_pred CCEEECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECC--CCCCCCCCCCCCC
Q ss_conf 95187778999754---------532212899941255799998852389999888603674128--8458888732237
Q 000613 801 NGTTTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVRG--GIAETPCPYRCIS 869 (1391)
Q Consensus 801 nGTi~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~g--G~~~~~CpY~C~s 869 (1391)
.+..-=+.||+|+| ...|++||.|+|....+. ...|.+|+. -.....+..++. ..+.+.| .|.+
T Consensus 41 ~~~~CC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~--C~~~~~~~~~~~Ct~t~dtvC--~C~~ 115 (216)
T 3me4_A 41 HLGRCCSRCEPGKYLSSKCTPTSDSVCLPCGPDEYLDTWNE-EDKCLLHKV--CDAGKALVAVDPGNHTAPRRC--ACTA 115 (216)
T ss_dssp ETTEEEECBCTTEEEEECCBTTBCCEEEECCTTEECCSSBC-CSSCEECCC--CCGGGTEEEESTTCSSSCCEE--EECT
T ss_pred CCCCCCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCC--CCCCCCEEEEECCCCCCCCCC--CCCC
T ss_conf 67888689998955635689999982032899976257898-876978888--788757688724778888502--5879
Q ss_pred CCCC
Q ss_conf 8757
Q 000613 870 ERYH 873 (1391)
Q Consensus 870 ~~~~ 873 (1391)
++|.
T Consensus 116 G~y~ 119 (216)
T 3me4_A 116 GYHW 119 (216)
T ss_dssp TEEE
T ss_pred CEEC
T ss_conf 9470
No 5
>1jma_B Herpesvirus entry mediator; V-type IG molecule and TNFR superfamily, viral protein; HET: NAG; 2.65A {Human herpesvirus 1} SCOP: g.24.1.1 g.24.1.1 PDB: 2aw2_B*
Probab=1.00 E-value=1 Score=34.70 Aligned_cols=66 Identities=26% Similarity=0.525 Sum_probs=41.4
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEC-CCCCCCCCCCCCCCCCC
Q ss_conf 87778999754---------5322128999412557999988523899998886-0367412-88458888732237875
Q 000613 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVR-GGIAETPCPYRCISERY 872 (1391)
Q Consensus 804 i~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~r-a~~i~v~-gG~~~~~CpY~C~s~~~ 872 (1391)
..=+.||+|+| ...|++||.|+|....+. ...|.+|+. -+.. ..++... .....+.| .|.+++|
T Consensus 14 ~~C~~CppG~~~~~~C~~~~~t~C~~Cp~GtY~~~~n~-~~~C~~C~~--C~~~~g~~~~~~Ct~t~~t~C--~C~~G~y 88 (167)
T 1jma_B 14 ECCPKCSPGYRVKEACGELTGTVCEPCPPGTYIAHLNG-LSKCLQCQM--CDPAMGLRASRNCSRTENAVC--GCSPGHF 88 (167)
T ss_dssp BCCBCBCTTEEEEECCCSSSCCEEEECCTTEECSSCBC-SSCCEECCC--CCTTTTEEEEECCCSSSCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC--CCCCCCEEEECCCCCCCCCCC--CCCCCCE
T ss_conf 28888899987656789999985772989951366676-763648744--566788688556788888700--3899965
Q ss_pred CC
Q ss_conf 78
Q 000613 873 HM 874 (1391)
Q Consensus 873 ~~ 874 (1391)
..
T Consensus 89 ~~ 90 (167)
T 1jma_B 89 CI 90 (167)
T ss_dssp EE
T ss_pred EC
T ss_conf 26
No 6
>2uwi_A CRME protein; receptor, poxvirus TNF receptor, receptor immunomodulator, TNF alpha receptor; 2.0A {Vaccinia virus}
Probab=1.00 E-value=1 Score=34.42 Aligned_cols=64 Identities=25% Similarity=0.585 Sum_probs=41.6
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCCC
Q ss_conf 87778999754---------53221289994125579999885238999988860367412--88458888732237875
Q 000613 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR--GGIAETPCPYRCISERY 872 (1391)
Q Consensus 804 i~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~--gG~~~~~CpY~C~s~~~ 872 (1391)
.-=+.||||.| ..-|++||.|+|...... ...|.+|..-. + ...+-++ -..+.+.| .|.+++|
T Consensus 15 ~cC~~CppG~~~~~~C~~~~~t~C~pC~~gty~~~~n~-~~~C~~C~~C~-~--~~~~~~~~Ct~t~dtvC--~C~~G~y 88 (142)
T 2uwi_A 15 KCCKLCKPGTYSDHRCDKYSDTICGHCPSDTFTSIYNR-SPWCHSCRGPC-G--TNRVEVTPCTPTTNRIC--HCDSNSY 88 (142)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBC-CSSCEECCCCC-C--TTEEEEECCBTTBCCEE--EECTTEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCCCC-C--CCEEEEECCCCCCCCEE--ECCCCCE
T ss_conf 88878988974676688998975675899977456898-98467876705-6--88567615989879981--1899968
Q ss_pred C
Q ss_conf 7
Q 000613 873 H 873 (1391)
Q Consensus 873 ~ 873 (1391)
.
T Consensus 89 c 89 (142)
T 2uwi_A 89 C 89 (142)
T ss_dssp E
T ss_pred E
T ss_conf 5
No 7
>2hey_R Tumor necrosis factor receptor superfamily member; cytokine, receptor-ligan complex, CO-stimulator, TNFSF; 2.00A {Homo sapiens} SCOP: g.24.1.1 g.24.1.1 g.24.1.1 PDB: 2hev_R
Probab=1.00 E-value=1 Score=34.19 Aligned_cols=63 Identities=24% Similarity=0.448 Sum_probs=38.7
Q ss_pred CCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCC-CEEEEEC-CCCCCCCCCCCCCCCCCCC
Q ss_conf 778999754---------5322128999412557999988523899998886-0367412-8845888873223787578
Q 000613 806 GKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHR-AVYISVR-GGIAETPCPYRCISERYHM 874 (1391)
Q Consensus 806 g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~r-a~~i~v~-gG~~~~~CpY~C~s~~~~~ 874 (1391)
=+.||+|.| ..-|++||.|+|....+. ..|.+|+. -+.. ..++... .....+.| .|.+++|..
T Consensus 19 C~~C~pG~~~~~~Ct~~~~t~C~~C~~gty~~~~~~--~~C~~C~~--C~~~~g~~~~~~Ct~t~dt~C--~C~~G~y~~ 92 (146)
T 2hey_R 19 CHECRPGNGMVSRCSRSQNTVCRPCGPGFYNDVVSS--KPCKPCTW--CNLRSGSERKQLCTATQDTVC--RCRAGTQPL 92 (146)
T ss_dssp EECBCTTEEEEECCCSSCCCEEEECCTTEECCSCBS--SCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTEEES
T ss_pred CCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC--CCCCCCCC--CCCCCCCEEECCCCCCCCCCC--CCCCCEEEC
T ss_conf 989898970405578998987554999888788888--74866687--887778367616766778644--477870607
No 8
>3k51_B Decoy receptor 3; DCR3, TL1A, TNF, TNFR, immunity, cytokine, D bond, glycoprotein, membrane, secreted, signal-anchor, transmembrane, apoptosis; 2.45A {Homo sapiens} PDB: 3mi8_D 3mhd_D
Probab=1.00 E-value=1 Score=33.49 Aligned_cols=63 Identities=21% Similarity=0.460 Sum_probs=37.3
Q ss_pred ECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCCCC
Q ss_conf 7778999754---------53221289994125579999885238999988860367412--884588887322378757
Q 000613 805 TGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR--GGIAETPCPYRCISERYH 873 (1391)
Q Consensus 805 ~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~--gG~~~~~CpY~C~s~~~~ 873 (1391)
-=+.||+|+| ..-|++||.|+|...... ...|++|... -.. ..+.++ -..+.+.| .|.+++|-
T Consensus 21 cC~~CppG~~~~~~Ct~~~~t~C~pC~~gtY~~~~n~-~~~C~~C~~~-C~~--~~~~~~~Ct~tsdtvC--~C~~G~~~ 94 (176)
T 3k51_B 21 VCAQCPPGTFVQRPCRRDSPTTCGPCPPRHYTQFWNY-LERCRYCNVL-CGE--REEEARACHATHNRAC--RCRTGFFA 94 (176)
T ss_dssp EEECBCTTEEEEECCCSSSCCEEEECCTTEECCSCBC-CSSCEECCCC-CCS--SEEEEECCBTTBCCEE--EECTTEEE
T ss_pred CCCCCCCCCEECCCCCCCCCCCCCCCCCCCEECCCCC-CCCCCCCCCC-CCC--CCEEECCCCCCCCCEE--ECCCCEEE
T ss_conf 8979798934676689999984020899876567898-9827354576-799--9788436768778600--15688667
No 9
>3alq_R Tumor necrosis factor receptor superfamily member; ligand-receptor complex, cytokine, cytokine-cytokine recepto; 3.00A {Homo sapiens}
Probab=1.00 E-value=1 Score=33.15 Aligned_cols=66 Identities=17% Similarity=0.337 Sum_probs=39.7
Q ss_pred EECCCCCCCCC---------CCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC-CCCCCCCCCCCCCCCCCC
Q ss_conf 87778999754---------53221289994125579999885238999988860367412-884588887322378757
Q 000613 804 TTGKACPKGLY---------GIFCEECPVGTYKNVTGSDKSLCHQCPPQEFPHRAVYISVR-GGIAETPCPYRCISERYH 873 (1391)
Q Consensus 804 i~g~~CP~Gly---------G~fC~eCP~GtYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~-gG~~~~~CpY~C~s~~~~ 873 (1391)
.-=+.||+|.| ..-|++||.|+|....+.. ..|.+|... -+. ..+.... -....+.| .|.+++|.
T Consensus 20 ~cC~~C~pG~~~~~~C~~~~~t~C~~C~~gty~~~~n~~-~~C~~C~~~-C~~-g~~~~~~Ct~t~d~~C--~C~~G~y~ 94 (173)
T 3alq_R 20 MCCSKCSPGQHAKVFCTKTSDTVCDSCEDSTYTQLWNWV-PECLSCGSR-CSS-DQVETQACTREQNRIC--TCRPGWYC 94 (173)
T ss_dssp EEEECBCTTEEEEECCCSSCCCEEEECCTTEECCSSBCC-SSCEECCCC-CCT-TEEEEECCCSSSCCEE--EECTTEEE
T ss_pred CCCCCCCCCCEECCCCCCCCCCCCCCCCCCCCCCCCCCC-CCCCCCCCC-CCC-CCEEECCCCCCCCCEE--ECCCCEEE
T ss_conf 689889879855666889998807769999641679989-805889884-799-9788447889879946--77898574
Q ss_pred C
Q ss_conf 8
Q 000613 874 M 874 (1391)
Q Consensus 874 ~ 874 (1391)
.
T Consensus 95 ~ 95 (173)
T 3alq_R 95 A 95 (173)
T ss_dssp E
T ss_pred C
T ss_conf 4
No 10
>3tje_F Tumor necrosis factor receptor superfamily member; agonistic antibody, FAB fragment, antibody-receptor complex, cysteine-rich domain, FAS, immune; HET: EDO; 1.93A {Homo sapiens} PDB: 3thm_F*
Probab=1.00 E-value=1 Score=33.10 Aligned_cols=65 Identities=23% Similarity=0.397 Sum_probs=34.7
Q ss_pred ECCCCCCCCC----------CCCCEECCCC-CCCCCCCCCCCCCCCCCCCCCCCCCEEEEEC--CCCCCCCCCCCCCCCC
Q ss_conf 7778999754----------5322128999-4125579999885238999988860367412--8845888873223787
Q 000613 805 TGKACPKGLY----------GIFCEECPVG-TYKNVTGSDKSLCHQCPPQEFPHRAVYISVR--GGIAETPCPYRCISER 871 (1391)
Q Consensus 805 ~g~~CP~Gly----------G~fC~eCP~G-tYKn~sGs~~~~C~pCp~~~~p~ra~~i~v~--gG~~~~~CpY~C~s~~ 871 (1391)
-=+.||||+| -.-|++||.| +|...... ...|.+|.. -........++ -..+.+.| .|.+++
T Consensus 43 CC~~CppG~~v~~~Ct~~~~~t~C~pC~~g~ty~~~~n~-~~~C~~C~~--C~~~~g~~~~~~CT~t~dtvC--~C~~G~ 117 (156)
T 3tje_F 43 CHKPCPPGERKARDCTVNGDEPDCVPCQEGKEYTDKAHF-SSKCRRCRL--CDEGHGLEVEINCTRTQNTKC--RCKPNF 117 (156)
T ss_dssp CSSCBCTTEEESSCCCSSSCCCCEEECCTTTEECSSCBS-CSCCEECCC--CCGGGTEEEEECCBTTBCCEE--EECTTE
T ss_pred ECCCCCCCCEECCCCCCCCCCCCCEECCCCCEEECCCCC-CCCCCCCCC--CCCCCCEEEECCCCCCCCCEE--ECCCCC
T ss_conf 988899897177768899989765039898704036898-772757887--788844478646647789711--289998
Q ss_pred CCC
Q ss_conf 578
Q 000613 872 YHM 874 (1391)
Q Consensus 872 ~~~ 874 (1391)
|-.
T Consensus 118 fc~ 120 (156)
T 3tje_F 118 FCN 120 (156)
T ss_dssp ECC
T ss_pred EEC
T ss_conf 768
Done!