BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 000614
(1389 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|4FU6|A Chain A, Crystal Structure Of The Psip1 Pwwp Domain
Length = 153
Score = 59.7 bits (143), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 WKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEE 81
+K GDL+ AK+KG+P WPA V E K+ +FFFGT + AF P D+ ++E
Sbjct: 23 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN 82
Query: 82 K-KQSLLTKRQG 92
K K KR+G
Sbjct: 83 KEKYGKPNKRKG 94
>pdb|2NLU|A Chain A, Domain-Swapped Dimer Of The Pwwp Module Of Human
Hepatoma- Derived Growth Factor
pdb|2NLU|B Chain B, Domain-Swapped Dimer Of The Pwwp Module Of Human
Hepatoma- Derived Growth Factor
Length = 100
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 21 QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTE 80
++K GDLV AK+KG+P WPA + E + + K VFFFGT + AF P D+ + E
Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEE 68
Query: 81 EKKQ 84
K++
Sbjct: 69 SKEK 72
>pdb|1RI0|A Chain A, Nmr Structure Of The N-Terminal Hath Domain Of Human
Hdgf
Length = 110
Score = 59.3 bits (142), Expect = 1e-08, Method: Composition-based stats.
Identities = 27/64 (42%), Positives = 39/64 (60%)
Query: 21 QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTE 80
++K GDLV AK+KG+P WPA + E + + K VFFFGT + AF P D+ + E
Sbjct: 19 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEE 78
Query: 81 EKKQ 84
K++
Sbjct: 79 SKEK 82
>pdb|2B8A|A Chain A, High Resolution Structure Of The Hdgf Pwwp Domain
Length = 110
Score = 58.9 bits (141), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 46/85 (54%), Gaps = 5/85 (5%)
Query: 21 QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTE 80
++K GDLV AK+KG+P WPA + E + + K VFFFGT + AF P D+ + E
Sbjct: 9 EYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEE 68
Query: 81 EK-KQSLLTKRQGRGADFVRAVQEI 104
K K KR+G F + EI
Sbjct: 69 SKEKFGKPNKRKG----FSEGLWEI 89
>pdb|2M16|A Chain A, P75/ledgf Pwwp Domain
Length = 97
Score = 58.5 bits (140), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/72 (41%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 22 WKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEE 81
+K GDL+ AK+KG+P WPA V E K+ +FFFGT + AF P D+ ++E
Sbjct: 9 FKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYSEN 68
Query: 82 K-KQSLLTKRQG 92
K K KR+G
Sbjct: 69 KEKYGKPNKRKG 80
>pdb|1N27|A Chain A, Solution Structure Of The Pwwp Domain Of Mouse Hepatoma-
Derived Growth Factor, Related Protein 3
Length = 96
Score = 57.0 bits (136), Expect = 7e-08, Method: Composition-based stats.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 21 QWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTE 80
++K GDLV AK+KG+P WPA + E + K +FFFGT + AF P D+ + E
Sbjct: 8 EYKAGDLVFAKMKGYPHWPARIDELPEGAVKPPANKYPIFFFGTHETAFLGPKDLFPYKE 67
Query: 81 EK-KQSLLTKRQG 92
K K KR+G
Sbjct: 68 YKDKFGKSNKRKG 80
>pdb|3QBY|A Chain A, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|B Chain B, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QBY|C Chain C, Crystal Structure Of The Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2
pdb|3QJ6|A Chain A, The Crystal Structure Of Pwwp Domain Of Human
Hepatoma-Derived Growth Factor 2 In Complex With
H3k79me3 Peptide
Length = 94
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 22 WKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEE 81
+K GDLV AK+KG+P WPA + + K +FFFGT + AF P D+ + +
Sbjct: 6 FKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKC 65
Query: 82 K-KQSLLTKRQG 92
K K KR+G
Sbjct: 66 KDKYGKPNKRKG 77
>pdb|3EAE|A Chain A, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
pdb|3EAE|B Chain B, Pwwp Domain Of Human Hepatoma-Derived Growth Factor 2
(Hdgf2)
Length = 93
Score = 51.6 bits (122), Expect = 3e-06, Method: Composition-based stats.
Identities = 28/72 (38%), Positives = 39/72 (54%), Gaps = 1/72 (1%)
Query: 22 WKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEE 81
+K GDLV AK+KG+P WPA + + K +FFFGT + AF P D+ + +
Sbjct: 5 FKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKC 64
Query: 82 K-KQSLLTKRQG 92
K K KR+G
Sbjct: 65 KDKYGKPNKRKG 76
>pdb|1KHC|A Chain A, Crystal Structure Of The Pwwp Domain Of Mammalian Dna
Methyltransferase Dnmt3b
Length = 147
Score = 31.6 bits (70), Expect = 3.3, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 21 QWKVGDLVLAKVKGFPAWPATV 42
++ +GDLV K+KGF WPA V
Sbjct: 11 EFGIGDLVWGKIKGFSWWPAMV 32
>pdb|3FLG|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta
pdb|3QKJ|A Chain A, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With
A Bis-Tris Molecule
pdb|3QKJ|B Chain B, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With
A Bis-Tris Molecule
pdb|3QKJ|C Chain C, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With
A Bis-Tris Molecule
pdb|3QKJ|D Chain D, The Pwwp Domain Of Human Dna
(Cytosine-5-)-Methyltransferase 3 Beta In Complex With
A Bis-Tris Molecule
Length = 151
Score = 31.6 bits (70), Expect = 3.6, Method: Composition-based stats.
Identities = 12/22 (54%), Positives = 16/22 (72%)
Query: 21 QWKVGDLVLAKVKGFPAWPATV 42
++ +GDLV K+KGF WPA V
Sbjct: 18 EFGIGDLVWGKIKGFSWWPAMV 39
>pdb|1H3Z|A Chain A, Solution Structure Of A Pwwp Domain From
Schizosaccharomyces Pombe
Length = 109
Score = 30.4 bits (67), Expect = 8.0, Method: Compositional matrix adjust.
Identities = 23/93 (24%), Positives = 38/93 (40%), Gaps = 17/93 (18%)
Query: 22 WKVGDLVLAKVKGFPAWPATV------------SEPEKWGYSADWKKVLVFFFGTQQIAF 69
+K G VL K+ GFP WP+ V S+P++ G V FF ++ +
Sbjct: 7 YKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYP-----VIFFPNKEYLW 61
Query: 70 CNPADVEAFTEEKKQSLLTKRQGRGADFVRAVQ 102
+ T E L K + + A ++A +
Sbjct: 62 TGSDSLTPLTSEAISQFLEKPKPKTASLIKAYK 94
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.311 0.127 0.368
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 37,788,978
Number of Sequences: 62578
Number of extensions: 1482313
Number of successful extensions: 2371
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 2360
Number of HSP's gapped (non-prelim): 14
length of query: 1389
length of database: 14,973,337
effective HSP length: 111
effective length of query: 1278
effective length of database: 8,027,179
effective search space: 10258734762
effective search space used: 10258734762
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 58 (26.9 bits)