Query 000614
Match_columns 1389
No_of_seqs 205 out of 523
Neff 3.2
Searched_HMMs 29240
Date Tue Mar 26 18:24:36 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000614.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_384-388//hhsearch_pdb/000614hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4fu6_A PC4 and SFRS1-interacti 1.0 1 1 204.8 3.3 104 1-107 1-105 (153)
2 2daq_A WHSC1L1 protein, isofor 1.0 1 1 174.3 5.6 99 18-117 5-108 (110)
3 2l89_A PWWP domain-containing 1.0 1 1 173.9 3.3 95 18-112 2-101 (108)
4 1ri0_A Hepatoma-derived growth 1.0 1 1 171.3 6.5 87 17-106 15-101 (110)
5 3qby_A Hepatoma-derived growth 1.0 1 1 171.0 7.9 84 20-106 4-87 (94)
6 3llr_A DNA (cytosine-5)-methyl 1.0 1 1 170.7 6.8 93 17-110 12-105 (154)
7 1khc_A DNA cytosine-5 methyltr 1.0 1 1 165.9 6.0 93 18-111 8-101 (147)
8 2gfu_A DNA mismatch repair pro 1.0 1 1 165.6 4.5 99 17-115 18-123 (134)
9 1h3z_A Hypothetical 62.8 kDa p 1.0 1 1 162.6 7.6 91 19-109 4-101 (109)
10 3pfs_A Bromodomain and PHD fin 1.0 1 1 144.6 7.6 87 19-105 34-146 (158)
No 1
>4fu6_A PC4 and SFRS1-interacting protein; structural genomics consortium, SGC, transcription; 2.10A {Homo sapiens} PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=204.85 Aligned_cols=104 Identities=30% Similarity=0.534 Sum_probs=89.5
Q ss_pred CCCCCCCCCHH-HHHHHHHCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCC
Q ss_conf 98410133016-89988621898659799880589988970662889878888897799999368976542268643541
Q 000614 1 MAPSRRKGASK-AAAAAAARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFT 79 (1389)
Q Consensus 1 MaP~r~k~g~k-aaAaa~a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~K~~~kkYlV~FFGT~EyAWV~~kdLkPFs 79 (1389)
|||.|+|.+++ ....+...+.|++||||||||+|||||||+|+++.....+...++|+|+|||+++||||..++|++|.
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~~~~~~~~~V~FfG~~~~awv~~~~l~~f~ 80 (153)
T 4fu6_A 1 MHHHHHHSSGRENLYFQGMTRDFKPGDLIFAKMKGYPHWPARVDEVPDGAVKPPTNKLPIFFFGTHETAFLGPKDIFPYS 80 (153)
T ss_dssp ------------CTTTTCSGGGCCTTCEEEECCTTSCCEEEEECCCC---CCCCTTCEEEEETTTCCEEEECGGGEEEHH
T ss_pred CCCCCCCCCCHHHHHHHHCCCCCCCCCEEEEECCCCCCCCEEEEECHHHCCCCCCCEEEEEECCCCCEEEECHHHCCCHH
T ss_conf 97534466532367776414689999999882799799997971722421589889898896689986875787734757
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q ss_conf 8899876531479907799999999999
Q 000614 80 EEKKQSLLTKRQGRGADFVRAVQEIIDS 107 (1389)
Q Consensus 80 E~kkesfl~KrkgK~KdF~eALeEAee~ 107 (1389)
+++. .|.. +.|.+.|++||+||++.
T Consensus 81 e~~~-~~~k--~~k~k~f~~Av~Eie~~ 105 (153)
T 4fu6_A 81 ENKE-KYGK--PNKRKGFNEGLWEIDNN 105 (153)
T ss_dssp HHHH-HHCS--CCSSTTHHHHHHHHHHC
T ss_pred HHHH-HHHC--CCCHHHHHHHHHHHHHC
T ss_conf 6788-8743--10469999999999977
No 2
>2daq_A WHSC1L1 protein, isoform long; PWWP domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=174.33 Aligned_cols=99 Identities=21% Similarity=0.413 Sum_probs=82.6
Q ss_pred HCCCCCCCCEEEECCCCCCCCCEEEECCCCCCC-----CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 218986597998805899889706628898788-----888977999993689765422686435418899876531479
Q 000614 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQG 92 (1389)
Q Consensus 18 a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~-----K~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~Krkg 92 (1389)
..+.|.+||||||||+|||||||+|+++...+. +...+.|+|+|||+++||||+.++|++|.+++. .|....+.
T Consensus 5 ~g~~~~~GdlVwaK~~g~p~WPa~V~~~~~~p~~~~~~~~~~~~~~V~FFg~~~~awv~~~~l~p~~~~~~-~~~~~~~~ 83 (110)
T 2daq_A 5 SSGKLHYKQIVWVKLGNYRWWPAEICNPRSVPLNIQGLKHDLGDFPVFFFGSHDYYWVHQGRVFPYVEGDK-SFAEGQTS 83 (110)
T ss_dssp CCCSCCSSEEEEEECSSSCEEEEEECCTTTSCHHHHTSCCCSSCEEEEETTTTEEEEECSSSSEECCSSCC-SSSCSSCC
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCHHHCCHHHHHCCCCCCCEEEEEECCCCEEEECHHHCCCCCHHHH-HHHHHCCC
T ss_conf 78878799899998079899965538945698777641678983899995689889986898727300247-77662421
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHCCC
Q ss_conf 9077999999999999998520134
Q 000614 93 RGADFVRAVQEIIDSYEKLKKQDQV 117 (1389)
Q Consensus 93 K~KdF~eALeEAee~~E~lK~Qeq~ 117 (1389)
+.+.|++||+||++.++.++++.++
T Consensus 84 ~~k~f~~Al~eA~~~~~~~~~~r~~ 108 (110)
T 2daq_A 84 INKTFKKALEEAAKRFQELKASGPS 108 (110)
T ss_dssp CCSHHHHHHHHHHHHHHHHHSSCCC
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHC
T ss_conf 4399999999999999998753112
No 3
>2l89_A PWWP domain-containing protein 1; histone binding, protein binding; NMR {Schizosaccharomyces pombe}
Probab=1.00 E-value=1 Score=173.91 Aligned_cols=95 Identities=18% Similarity=0.302 Sum_probs=79.3
Q ss_pred HCCCCCCCCEEEECCCCCCCCCEEEECCCCCCC---C--CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCC
Q ss_conf 218986597998805899889706628898788---8--88977999993689765422686435418899876531479
Q 000614 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY---S--ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQG 92 (1389)
Q Consensus 18 a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~---K--~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~Krkg 92 (1389)
+...|++||||||||+|||||||+|+++...+. + ...+.|+|+|||+++||||+.++|++|+++....|+.++++
T Consensus 2 ~~~~~~~GdlVwaK~~gyP~WPa~V~~~~~~p~~v~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~k~ 81 (108)
T 2l89_A 2 ADDRLNFGDRILVKAPGYPWWPALLLRRKETKDSLNTNSSFNVLYKVLFFPDFNFAWVKRNSVKPLLDSEIAKFLGSSKR 81 (108)
T ss_dssp CSCCCCTTEEEEEECSSSCEEEEEEEEEEEEESSSCSSSCEEEEEEEEETTTTEEEEECGGGEEECCHHHHHHHHHCSSS
T ss_pred CCCCCCCCCEEEEEECCCCCCCEEECCCCCCCHHHHHCCCCCCEEEEEECCCCCEEEECHHHCEECCHHHHHHHHHCCCC
T ss_conf 87756689999997378588866754745384877602689986999987899789986212446788899998760477
Q ss_pred CCHHHHHHHHHHHHHHHHHH
Q ss_conf 90779999999999999985
Q 000614 93 RGADFVRAVQEIIDSYEKLK 112 (1389)
Q Consensus 93 K~KdF~eALeEAee~~E~lK 112 (1389)
|.+.|++||++|.++..+..
T Consensus 82 k~k~l~~Aye~A~~~~~l~~ 101 (108)
T 2l89_A 82 KSKELIEAYEASKTPPDLKE 101 (108)
T ss_dssp CCHHHHHHHHHHTCGGGTSS
T ss_pred CCHHHHHHHHHHCCCCCHHH
T ss_conf 87999999999705887899
No 4
>1ri0_A Hepatoma-derived growth factor; HDGF, HATH domain, PWWP domain, heparin-binding, hormone/growth factor complex; NMR {Homo sapiens} SCOP: b.34.9.2 PDB: 2b8a_A 2nlu_A
Probab=1.00 E-value=1 Score=171.34 Aligned_cols=87 Identities=34% Similarity=0.635 Sum_probs=74.1
Q ss_pred HHCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 62189865979988058998897066288987888889779999936897654226864354188998765314799077
Q 000614 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGAD 96 (1389)
Q Consensus 17 ~a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~K~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~KrkgK~Kd 96 (1389)
.....|++||||||||+|||||||+|+++.....+...++|+|+|||+++||||..++|++|.+++. +|..+ .|.+.
T Consensus 15 ~~~~~~~~GdlVwaK~kGyP~WPa~V~~~p~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~-k~~~~--~K~k~ 91 (110)
T 1ri0_A 15 NRQKEYKCGDLVFAKMKGYPHWPARIDEMPEAAVKSTANKYQVFFFGTHETAFLGPKDLFPYEESKE-KFGKP--NKRKG 91 (110)
T ss_dssp CCSSSCCTTCEEEEEETTEEEEEEEEECCCSSSSCCCSSCEEEEETTTTEEEEECSTTEECHHHHHH-HCCCC--CCCHH
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEEECCCHHHCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHH-HHCCC--CCCHH
T ss_conf 5567798899999976897988999832557654789997999992489879987888232156478-87454--26399
Q ss_pred HHHHHHHHHH
Q ss_conf 9999999999
Q 000614 97 FVRAVQEIID 106 (1389)
Q Consensus 97 F~eALeEAee 106 (1389)
|++||+||++
T Consensus 92 f~~Al~Eie~ 101 (110)
T 1ri0_A 92 FSEGLWEIEN 101 (110)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHHH
T ss_conf 9999999986
No 5
>3qby_A Hepatoma-derived growth factor-related protein 2; HDGF2, structural genomics consortium, SGC, protein binding; HET: M3L; 1.95A {Homo sapiens} SCOP: b.34.9.2 PDB: 3qj6_A* 3eae_A 1n27_A
Probab=1.00 E-value=1 Score=171.00 Aligned_cols=84 Identities=32% Similarity=0.576 Sum_probs=73.6
Q ss_pred CCCCCCCEEEECCCCCCCCCEEEECCCCCCCCCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHHHHH
Q ss_conf 89865979988058998897066288987888889779999936897654226864354188998765314799077999
Q 000614 20 RQWKVGDLVLAKVKGFPAWPATVSEPEKWGYSADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGADFVR 99 (1389)
Q Consensus 20 ~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~K~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~KrkgK~KdF~e 99 (1389)
..|++||||||||+|||||||+|+++.....+...++|+|+||||++||||..++|++|.+++. .|.. ..|.+.|++
T Consensus 4 ~~f~~GdlVwaK~~g~p~WPa~V~~~~~~~~k~~~~~~~V~FFGt~~~awv~~~~l~pf~~~~~-~~~k--~~k~k~F~~ 80 (94)
T 3qby_A 4 HAFKPGDLVFAKMKGYPHWPARIDDIADGAVKPPPNKYPIFFFGTHETAFLGPKDLFPYDKCKD-KYGK--PNKRKGFNE 80 (94)
T ss_dssp CCCCTTCEEEECCTTSCCEEEEECCCCTTSBCCCTTCEEEEETTTCCEEEECGGGEEEHHHHHH-HHCS--CCSSTTHHH
T ss_pred CCCCCCCEEEEECCCCCCCCEEEEECCCCCCCCCCCEEEEEEECCCCCCEECHHHEEEHHHHHH-HHCC--CCCHHHHHH
T ss_conf 7376689999955787989979852430154678988999997389833684667567788799-8746--746799999
Q ss_pred HHHHHHH
Q ss_conf 9999999
Q 000614 100 AVQEIID 106 (1389)
Q Consensus 100 ALeEAee 106 (1389)
||+||++
T Consensus 81 Al~Eien 87 (94)
T 3qby_A 81 GLWEIQN 87 (94)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
T ss_conf 9999721
No 6
>3llr_A DNA (cytosine-5)-methyltransferase 3A; DNA methyltransferase, methylysine binding, STR genomics consortium, SGC, alternative promoter usage; HET: DNA BTB; 2.30A {Homo sapiens} SCOP: b.34.9.0
Probab=1.00 E-value=1 Score=170.67 Aligned_cols=93 Identities=17% Similarity=0.309 Sum_probs=76.1
Q ss_pred HHCCCCCCCCEEEECCCCCCCCCEEEECCCCCCC-CCCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCH
Q ss_conf 6218986597998805899889706628898788-888977999993689765422686435418899876531479907
Q 000614 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-SADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGA 95 (1389)
Q Consensus 17 ~a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~-K~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~KrkgK~K 95 (1389)
...+.|++||||||||+|||||||+|+++..... +...++|+|+|||+++||||..++|++|.+++. .|...+..|.+
T Consensus 12 ~dg~~f~~GDLVWaKvkG~PwWPa~V~~~~~~~k~~~~~~~~~V~FFG~~~~awv~~~~L~pf~e~~e-~f~~~~~~K~~ 90 (154)
T 3llr_A 12 EDGRGFGIGELVWGKLRGFSWWPGRIVSWWMTGRSRAAEGTRWVMWFGDGKFSVVCVEKLMPLSSFCS-AFHQATYNKQP 90 (154)
T ss_dssp CSSCCCCTTCEEEECCTTSCCEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGEEEGGGHHH-HCCHHHHHHCH
T ss_pred CCCCCCCCCCEEEEECCCCCCCCEEEECCCCCCCCCCCCCEEEEEEECCCCEEEECHHHCCCHHHHHH-HHHHHHCCCHH
T ss_conf 56898866888999668888799787431010233688997999995799779976898746321289-98565024639
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 799999999999999
Q 000614 96 DFVRAVQEIIDSYEK 110 (1389)
Q Consensus 96 dF~eALeEAee~~E~ 110 (1389)
.|++||+||++.+..
T Consensus 91 ~fr~AV~eAle~a~~ 105 (154)
T 3llr_A 91 MYRKAIYEVLQVASS 105 (154)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 7
>1khc_A DNA cytosine-5 methyltransferase 3B2; five beta-sheets barrel followed by five-helix bundle; HET: DNA; 1.80A {Mus musculus} SCOP: b.34.9.2 PDB: 3flg_A* 3qkj_A*
Probab=1.00 E-value=1 Score=165.95 Aligned_cols=93 Identities=19% Similarity=0.253 Sum_probs=75.0
Q ss_pred HCCCCCCCCEEEECCCCCCCCCEEEECCCCCCCC-CCCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCCCCCHH
Q ss_conf 2189865979988058998897066288987888-889779999936897654226864354188998765314799077
Q 000614 18 ARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGYS-ADWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQGRGAD 96 (1389)
Q Consensus 18 a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~K-~~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~KrkgK~Kd 96 (1389)
....|++||||||||+|||||||+|+++.....+ ...+.|+|+|||+++||||..++|++|.+++. .|..++..|++.
T Consensus 8 ~~~~~~~GDlVWaKvkGyPwWPa~V~~~~~~~~~~~~~~~~~V~FFG~~~~awv~~~~L~p~~~~~e-~f~~~~~~K~~~ 86 (147)
T 1khc_A 8 DDKEFGIGDLVWGKIKGFSWWPAMVVSWKATSKRQAMPGMRWVQWFGDGKFSEISADKLVALGLFSQ-HFNLATFNKLVS 86 (147)
T ss_dssp SSSSCCTTCEEEEEETTTEEEEEEEECGGGTTSCCCCTTEEEEEETTTCCEEEEEGGGCEETTSHHH-HCCHHHHHHCHH
T ss_pred CCCCCCCCCEEEEECCCCCCCCEEECCCHHHHCCCCCCCEEEEEEECCCCEEEECHHHCCCCHHHHH-HHHHHCCCCHHH
T ss_conf 8866767999998357738899785364011103577881899994699889976898813447899-876403110789
Q ss_pred HHHHHHHHHHHHHHH
Q ss_conf 999999999999998
Q 000614 97 FVRAVQEIIDSYEKL 111 (1389)
Q Consensus 97 F~eALeEAee~~E~l 111 (1389)
|++||+||++.....
T Consensus 87 f~kAv~eA~e~A~~r 101 (147)
T 1khc_A 87 YRKAMYHTLEKARVR 101 (147)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
T ss_conf 999999999999998
No 8
>2gfu_A DNA mismatch repair protein MSH6; PWWP domain, tudor domain, DNA binding, DNA binding protein; HET: DNA; NMR {Homo sapiens}
Probab=1.00 E-value=1 Score=165.63 Aligned_cols=99 Identities=23% Similarity=0.342 Sum_probs=77.6
Q ss_pred HHCCCCCCCCEEEECCCCCCCCCEEEECCCCCCC----CCCCCEEEEEEECCC-CEEEECCCCCCCCCHHHHHHHHHH--
Q ss_conf 6218986597998805899889706628898788----888977999993689-765422686435418899876531--
Q 000614 17 AARRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY----SADWKKVLVFFFGTQ-QIAFCNPADVEAFTEEKKQSLLTK-- 89 (1389)
Q Consensus 17 ~a~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~----K~~~kkYlV~FFGT~-EyAWV~~kdLkPFsE~kkesfl~K-- 89 (1389)
.....|++||||||||+|||||||+|+++..... +...+.|+|+|||++ +||||..++|++|.+++...+..+
T Consensus 18 ~~~~~~~~GdlVwaK~~g~P~WPa~V~~~~~~~~~~~~~~~~~~~~V~FFg~~~~~aWv~~~~l~pf~~~~~~~~~k~~~ 97 (134)
T 2gfu_A 18 PTSSDFSPGDLVWAKMEGYPWWPSLVYNHPFDGTFIREKGKSVRVHVQFFDDSPTRGWVSKRLLKPYTGSKSKEAQKGGH 97 (134)
T ss_dssp CSSCCCCTTSEEEECCTTSCCEEEECCCCSSTTCCEEESSSCEEEEEEECSSSCEEEEECGGGEEESCCTTSTTTSTTCT
T ss_pred CCCCCCCCCCEEEEEECCCCCCCEEECCHHHHHHHHHCCCCCCEEEEEECCCCCCEEEECHHHCCCCCCHHHHHHHHCCC
T ss_conf 76777878989999626878778664131010455521478861899989999836887789820075346788763031
Q ss_pred CCCCCHHHHHHHHHHHHHHHHHHHHC
Q ss_conf 47990779999999999999985201
Q 000614 90 RQGRGADFVRAVQEIIDSYEKLKKQD 115 (1389)
Q Consensus 90 rkgK~KdF~eALeEAee~~E~lK~Qe 115 (1389)
.+++.+.|++||++|+++++..+++.
T Consensus 98 ~~~~~~~~~~Ai~~A~~a~~~~~eeR 123 (134)
T 2gfu_A 98 FYSAKPEILRAMQRADEALNKDKIKR 123 (134)
T ss_dssp TCCCCHHHHHHHHHHHHHHSSCHHHH
T ss_pred CHHCCHHHHHHHHHHHHHHCCCHHHH
T ss_conf 00212999999999999862899999
No 9
>1h3z_A Hypothetical 62.8 kDa protein C215.07C; nuclear protein, PWWP, chromatin, beta-barrel; NMR {Schizosaccharomyces pombe} SCOP: b.34.9.2
Probab=1.00 E-value=1 Score=162.62 Aligned_cols=91 Identities=24% Similarity=0.385 Sum_probs=75.7
Q ss_pred CCCCCCCCEEEECCCCCCCCCEEEECCCCCCC-----CC--CCCEEEEEEECCCCEEEECCCCCCCCCHHHHHHHHHHCC
Q ss_conf 18986597998805899889706628898788-----88--897799999368976542268643541889987653147
Q 000614 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-----SA--DWKKVLVFFFGTQQIAFCNPADVEAFTEEKKQSLLTKRQ 91 (1389)
Q Consensus 19 ~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~-----K~--~~kkYlV~FFGT~EyAWV~~kdLkPFsE~kkesfl~Krk 91 (1389)
...|++||||||||+|||||||+|++++.... ++ ..+.|+|+|||+++||||..++|++|+++....++.+.+
T Consensus 4 ~~~~~~GdlVwaK~~gyP~WPa~V~~p~~~~~~~~~~~~~~~~~~~~V~FFg~~~~aWv~~~~l~p~~~~~~~~~~~~~~ 83 (109)
T 1h3z_A 4 RVNYKPGMRVLTKMSGFPWWPSMVVTESKMTSVARKSKPKRAGTFYPVIFFPNKEYLWTGSDSLTPLTSEAISQFLEKPK 83 (109)
T ss_dssp CCCCCTTCEEEEEETTEEEEEEEECCGGGCCHHHHHTCCCSSSCEEEEEETTTTCCEEEEGGGEEECCHHHHHHHHHSCS
T ss_pred CCCCCCCCEEEEEECCCCCCCEEECCCHHHHHHHHCCCCCCCCCEEEEEECCCCCEEEECHHHEEECCCHHHHHHHHCCC
T ss_conf 65587899999985880889989716077767765037778999799998689998998889924178167788753446
Q ss_pred CCCHHHHHHHHHHHHHHH
Q ss_conf 990779999999999999
Q 000614 92 GRGADFVRAVQEIIDSYE 109 (1389)
Q Consensus 92 gK~KdF~eALeEAee~~E 109 (1389)
.|++.+.+||++|.+..+
T Consensus 84 ~k~k~l~~Ay~~A~~~~~ 101 (109)
T 1h3z_A 84 PKTASLIKAYKMAQSTPD 101 (109)
T ss_dssp SCCHHHHHHHHHHHHCCS
T ss_pred CCCHHHHHHHHHHHCCCC
T ss_conf 377999999999822698
No 10
>3pfs_A Bromodomain and PHD finger-containing protein 3; structural genomics, structural genomics consortium, SGC, PW domain, protein binding; 1.90A {Homo sapiens} PDB: 3lyi_A*
Probab=1.00 E-value=1 Score=144.63 Aligned_cols=87 Identities=26% Similarity=0.370 Sum_probs=62.5
Q ss_pred CCCCCCCCEEEECCCCCCCCCEEEECCCCCCC-------------------------CCCCCEEEEEEECC-CCEEEECC
Q ss_conf 18986597998805899889706628898788-------------------------88897799999368-97654226
Q 000614 19 RRQWKVGDLVLAKVKGFPAWPATVSEPEKWGY-------------------------SADWKKVLVFFFGT-QQIAFCNP 72 (1389)
Q Consensus 19 ~~~FkvGDLVWAKLKGYPwWPArI~dPe~~~~-------------------------K~~~kkYlV~FFGT-~EyAWV~~ 72 (1389)
...|++||||||||+|||||||+|++|..-.. +...+.|+|+|||+ ++|+||+.
T Consensus 34 ~~~~~pgdlVWAK~~GyPwwPa~Iidp~~p~~g~~~~~v~ip~pP~~Vlk~~~~~~~~~~~~~ylV~FFd~~~t~aWV~~ 113 (158)
T 3pfs_A 34 RGDLEPLELVWAKCRGYPSYPALIIDPKMPREGLLHNGVPIPVPPLDVLKLGEQKQAEAGEKLFLVLFFDNKRTWQWLPR 113 (158)
T ss_dssp CSCCCTTCEEEEECTTSCEEEEEEECTTSCTTCEEETTEEECCCCHHHHHHHHHHHHHHTSCEEEEEECSTTCCEEEEEG
T ss_pred CCCCCCCCEEEEECCCCCCCCEEECCCCCCCCCCCCCCCCCCCCHHHHHHHCCCCCCCCCCCEEEEEECCCCCCEEEECC
T ss_conf 77788898889864777999878718888664522356536789099985220003567998799997689993686361
Q ss_pred CCCCCCCHHHHHHHHHHCCCCCHHHHHHHHHHH
Q ss_conf 864354188998765314799077999999999
Q 000614 73 ADVEAFTEEKKQSLLTKRQGRGADFVRAVQEII 105 (1389)
Q Consensus 73 kdLkPFsE~kkesfl~KrkgK~KdF~eALeEAe 105 (1389)
++|++|..........-..+|+..+++|+++|-
T Consensus 114 ~~L~Pl~~d~~~D~~kl~e~Kks~~rKAl~~AY 146 (158)
T 3pfs_A 114 DKVLPLGVEDTVDKLKMLEGRKTSIRKSVQVAY 146 (158)
T ss_dssp GGEEECSSCHHHHHHHHTTTTTSTHHHHHHHHH
T ss_pred CCEEECCCCHHHHHHHHCCCCCHHHHHHHHHHH
T ss_conf 357345771665244421378789999999999
Done!