Query 000615
Match_columns 1389
No_of_seqs 528 out of 5975
Neff 7.4
Searched_HMMs 29240
Date Tue Mar 26 15:56:57 2013
Command hhsearch -i /local_scratch/syshi/lefta3m/000615.a3m -d /local_scratch/syshi/pdb70.hhm -v 0 -o /local_scratch/syshi/H1_389-393//hhsearch_pdb/000615hhsearch_pdb
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4c_A Multidrug resistance pr 1.0 1 1 677.0 54.6 772 182-1092 429-1299(1321)
2 3g5u_A MCG1178, multidrug resi 1.0 1 1 611.8 57.8 774 183-1092 402-1253(1284)
3 3bk7_A ABC transporter ATP-bin 1.0 1 1 460.8 33.3 437 185-1095 106-561 (607)
4 3ux8_A Excinuclease ABC, A sub 1.0 1 1 453.9 36.1 215 183-432 30-297 (670)
5 1yqt_A RNAse L inhibitor; ATP- 1.0 1 1 450.5 32.3 437 185-1095 36-491 (538)
6 2iw3_A Elongation factor 3A; a 1.0 1 1 447.3 44.9 427 184-1091 448-981 (986)
7 3ozx_A RNAse L inhibitor; ATP 1.0 1 1 441.3 32.2 203 881-1106 282-486 (538)
8 3j16_B RLI1P; ribosome recycli 1.0 1 1 427.9 29.8 201 881-1106 361-568 (608)
9 3pih_A Uvrabc system protein A 1.0 1 1 348.7 34.7 198 881-1093 598-898 (916)
10 4f4c_A Multidrug resistance pr 1.0 1 1 348.6 20.8 215 852-1093 413-637 (1321)
No 1
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=677.04 Aligned_cols=772 Identities=19% Similarity=0.245 Sum_probs=395.4
Q ss_pred CCCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCC
Q ss_conf 65167550177883883999985999967999999943939999840199997960799876---732899547998899
Q 000615 182 RSVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHG 258 (1389)
Q Consensus 182 ~~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~ 258 (1389)
+..++|+|+|+.++||++++|+||+|||||||+++|.|.+++. +|+|.+||+++.+... ++.++||+|+++++.
T Consensus 429 ~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~---~G~I~idG~~i~~~~~~~lr~~i~~v~Q~~~Lf~ 505 (1321)
T 4f4c_A 429 PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVL---KGKITIDGVDVRDINLEFLRKNVAVVSQEPALFN 505 (1321)
T ss_dssp TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCS---EEEEEETTEETTTSCHHHHHHHEEEECSSCCCCS
T ss_pred CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCCCC---CCCCCCCCCCCHHCCHHHHHHCCCCCCCCCEEEC
T ss_conf 9874333318862288278998058985778888754565164---4861579965011259998504666587533207
Q ss_pred CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCC
Q ss_conf 99999999972010477612567788559988619999911899999998511110346999999809964345433574
Q 000615 259 EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDE 338 (1389)
Q Consensus 259 ~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~ 338 (1389)
.|||||+.|+. |+.+.+++.+|+..++.+.. +-.|+++.||.||+.
T Consensus 506 -~TI~eNI~~g~-------------------------~~~~~~~v~~a~~~a~l~~~--------i~~lp~G~~T~vGe~ 551 (1321)
T 4f4c_A 506 -CTIEENISLGK-------------------------EGITREEMVAACKMANAEKF--------IKTLPNGYNTLVGDR 551 (1321)
T ss_dssp -EEHHHHHHTTC-------------------------TTCCHHHHHHHHHHTTCHHH--------HHHSTTTTSSEESSS
T ss_pred -CCHHHHHHHHC-------------------------CCCHHHHHHHHHHHCCCHHH--------HHCCCCCCCCEECCC
T ss_conf -86167886415-------------------------52209999999987565468--------870888886075589
Q ss_pred CCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEEC
Q ss_conf 56678856766899999986299683984698899968799999999999882897599998149213885238699974
Q 000615 339 MRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLS 418 (1389)
Q Consensus 339 ~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs 418 (1389)
+..||||||||++||||++.+|++++||||||+||+.++..|.++|+++.+ ++|+|+..|+. ++...+|+|++|.
T Consensus 552 -G~~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~--~~T~iiiaHrl--s~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 552 -GTQLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAK--GRTTIIIAHRL--STIRNADLIISCK 626 (1321)
T ss_dssp -SCCCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHT--TSEEEEECSCT--TTTTTCSEEEEEE
T ss_pred -CCCCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHC--CCEEEEECCCH--HHHHHCCEEEEEE
T ss_conf -887777787999999987259998998455446887899999999999847--98899973638--7898689899963
Q ss_pred CCEEEEECCHHHHHHHHHHCCCCCCCCCCH-HHHHH--HHCCCCCHHHH--HHCCCC---------CCC--CCCHHHHHH
Q ss_conf 981899639567999998649879999996-77997--51472001255--640599---------987--799558999
Q 000615 419 EGQIVYQGPRDNVLEFFEHMGFKCPERKGV-ADFLQ--EVTSKKDQEQY--WFRKNQ---------PYR--YIPVSDFVE 482 (1389)
Q Consensus 419 ~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~-adfl~--ev~s~~~~~~~--~~~~~~---------~~~--~~~~~~f~~ 482 (1389)
+|+|+++|+++++++- .+. ++... ......+.... ....+. ... .....+...
T Consensus 627 ~G~ive~Gth~eL~~~-----------~g~y~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 695 (1321)
T 4f4c_A 627 NGQVVEVGDHRALMAQ-----------QGLYYDLVTAQTFTDAVDSAAEGKFSRENSVARQTSEHEGLSRQASEMDDIMN 695 (1321)
T ss_dssp TTEEEEEECHHHHHTT-----------TCHHHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred CCEEECCCCHHHHHHH-----------HHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHH
T ss_conf 9965136899999985-----------32799999962212222332334433223211122222342222222110221
Q ss_pred HHHHCCCCHHHHHHHCCCCCCCCCCCCC----------CCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH-
Q ss_conf 9971700065885303977765679876----------55676667799999999999999983083899999999999-
Q 000615 483 GFKSFHMGQQIASDLRVPYDKSQAHPAS----------LVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTF- 551 (1389)
Q Consensus 483 ~~~~s~~~~~~~~~l~~~~~~~~~~~~~----------~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i- 551 (1389)
..+.+.......... .++....... ........+.+..++ ..+.....++.-.+...+
T Consensus 696 ~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~i~ 764 (1321)
T 4f4c_A 696 RVRSSTIGSITNGPV---IDEKEERIGKDALSRLKQELEENNAQKTNLFEILY--------HARPHALSLFIGMSTATIG 764 (1321)
T ss_dssp -----------------------CCCCCCHHHHHHHTTTTSCCCCCCHHHHHH--------HTGGGHHHHHHHHHHHHHG
T ss_pred HHHCCCCCCCCCCCC---HHHHHHHCCCHHHHHHHHHHHHCCCCCEEHHHHHH--------HHHHHHHHHHHHHHHHHHH
T ss_conf 110132124567740---25777531540389999999970786310999999--------9877899999999999999
Q ss_pred ------HHHHHHHHHCCC-CCCCCCCCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHH
Q ss_conf ------999987654044-5777787884015778999999999--9788999998722246666101766423658998
Q 000615 552 ------MSLICMTVYFRT-EMSVGDMNGGSRYFGALFFSLLNIM--FNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALP 622 (1389)
Q Consensus 552 ------~ali~gtvf~~~-~~~~~~~~~~~~~~g~lff~ll~~~--~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la 622 (1389)
.++..+. ++.. ..+.........+++.+|+.+.... +..+...........+
T Consensus 765 ~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i~~~~~~~~~~~~~~~~------------------ 825 (1321)
T 4f4c_A 765 GFIYPTYSVFFTS-FMNVFAGNPADFLSQGHFWALMFLVLAAAQGICSFLMTFFMGIASESL------------------ 825 (1321)
T ss_dssp GGHHHHHHHHHHH-HHHHTSSCSSTTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_pred HHHHHHHHHHHHH-HHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------
T ss_conf 9999999999999-998751793455667899999999999999999999999999999999------------------
Q ss_pred HHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHCCCHHHHHHHH--H
Q ss_conf 9998710999989999878866048851287999999999999998---------9999999998406657788899--9
Q 000615 623 IWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFLAFFSIHNM---------SLPLYRLVAAVGRTEVISNTLG--T 691 (1389)
Q Consensus 623 ~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l~~~l~~~~---------~~~lf~~iaa~~~~~~~a~~~~--~ 691 (1389)
..++-..++..++...+.||-. -....++....+......... ...++.+++++.-.......++ .
T Consensus 826 --~~~lr~~l~~~il~~~~~ffd~-~~~~~G~i~~r~s~D~~~i~~~l~~~l~~~~~~~~~~i~~~~~~~~~~~~l~lv~ 902 (1321)
T 4f4c_A 826 --TRDLRNKLFRNVLSQHIGFFDS-PQNASGKISTRLATDVPNLRTAIDFRFSTVITTLVSMVAGIGLAFFYGWQMALLI 902 (1321)
T ss_dssp --HHHHHHHHHHHHHTSCSSSTTS-GGGCHHHHHHHHHTHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred --HHHHHHHHHHHHHCCCCHHHCC-CCCCHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEEHHHHHHHHHHH
T ss_conf --9999999988873499333216-7888488885025059999999999999999986537777022137868999999
Q ss_pred HHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-----
Q ss_conf 999999998750024698223689999781998999999998750885445789988755542200001247433-----
Q 000615 692 FILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFST----- 766 (1389)
Q Consensus 692 ~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nEf~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~----- 766 (1389)
+++++++.+..++..+..........- .++.......|.. .|...++.++...
T Consensus 903 l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~e~l-----------------~gi~tIra~~~e~~~~~~ 960 (1321)
T 4f4c_A 903 IAILPIVAFGQYLRGRRFTGKNVKSAS-----EFADSGKIAIEAI-----------------ENVRTVQALAREDTFYEN 960 (1321)
T ss_dssp HHHHHHHHHHHHHHTSCCSSCSTTTSS-----HHHHHHHHHHHHH-----------------HTHHHHHHTTTHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHH-----------------HHHHHHHHCCCHHHHHHH
T ss_conf 998889999999999999999999999-----9888988999999-----------------627988861414889999
Q ss_pred ---------C-----CCHHHHHHHHHHHH-HHHHHHHHHHHHHHCCCCCCCCC-E------------------EEECCCH
Q ss_conf ---------5-----72065789999999-99999999999980487899984-0------------------4302110
Q 000615 767 ---------E-----SNWYWIGVGALTGY-SFLFNFLFIAALAYLNPIGDSNS-T------------------VIEEDGE 812 (1389)
Q Consensus 767 ---------~-----~~~~w~~~g~l~~~-~~~f~~l~~l~l~~~~~~~~~~~-~------------------~~~~~~~ 812 (1389)
. ..+.+...+..... .+...+.++++............ . .......
T Consensus 961 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 1040 (1321)
T 4f4c_A 961 FCEKLDIPHKEAIKEAFIQGLSYGCASSVLYLLNTCAYRMGLALIITDPPTMQPMRVLRVMYAITISTSTLGFATSYFPE 1040 (1321)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHTTSSSSCSSCHHHHHHHHHHHHTTTSSTTGGGGHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_conf 99999999999999999999999999999999999999875788753765421478999999998778899999999999
Q ss_pred HHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEEC
Q ss_conf 21105741000122211455445554334567644456782678833401353352211246565651551020358847
Q 000615 813 KQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRP 892 (1389)
Q Consensus 813 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~ 892 (1389)
..... ...+......... .........+ ..+.....++|+|+++.++.. ....+|+|+|+.++|
T Consensus 1041 ~~~~~-~a~~ri~~~l~~~----~~~~~~~~~~-~~~~~~g~I~f~nVsf~Y~~~----------~~~~VL~~isl~I~~ 1104 (1321)
T 4f4c_A 1041 YAKAT-FAGGIIFGMLRKI----SKIDSLSLAG-EKKKLYGKVIFKNVRFAYPER----------PEIEILKGLSFSVEP 1104 (1321)
T ss_dssp HHHHH-HHHHHHHHHHHCC----CSSCTTCCCS-BCCCCCCCEEEEEEEECCTTS----------CSSCSEEEEEEEECT
T ss_pred HHHHH-HHHHHHHHHHHCC----CCCCCCCCCC-CCCCCCCEEEEEEEEEECCCC----------CCCCCCCCEEEEECC
T ss_conf 99999-9999899986076----6577766778-788888818999879857999----------988212451699889
Q ss_pred CEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCC---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHC
Q ss_conf 819999646899467899645299889637999999590388---23120216684248978999999999998887305
Q 000615 893 GVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRL 969 (1389)
Q Consensus 893 G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~ 969 (1389)
||.+||+|+||||||||+++|.|...+ .+|.|.+||.+.. ...+|+.++||+|++.+++ -|++||+.|.. .
T Consensus 1105 Ge~vaIVG~SGsGKSTL~~lL~rl~~p--~~G~I~iDG~di~~i~~~~lR~~i~~V~Qdp~LF~-gTIreNI~~gl---d 1178 (1321)
T 4f4c_A 1105 GQTLALVGPSGCGKSTVVALLERFYDT--LGGEIFIDGSEIKTLNPEHTRSQIAIVSQEPTLFD-CSIAENIIYGL---D 1178 (1321)
T ss_dssp TCEEEEECSTTSSTTSHHHHHTTSSCC--SSSEEEETTEETTTBCHHHHHTTEEEECSSCCCCS-EEHHHHHSSSS---C
T ss_pred CCEEEEECCCCCHHHHHHHHHHCCCCC--CCCEEEECCEEHHHCCHHHHHHHEEEECCCCEEEC-CCHHHHHHCCC---C
T ss_conf 899999899998199999999568638--99789999998654999999854599878997327-23999974549---9
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCCC-------CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHH
Q ss_conf 9998399999999999998299554-------333346998878899899999999999639997203079999999999
Q 000615 970 SSDVDTKKRKMFVDEVMELVELKSL-------NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAA 1042 (1389)
Q Consensus 970 ~~~~~~~~~~~~v~~vl~~l~L~~~-------~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~ 1042 (1389)
+.+.+. +.++++++..++.+. .|+.+|..|. +||||||||++|||+|+++|+||+||||||+||+++.
T Consensus 1179 ~~~~sd----~ei~~Al~~a~l~~~I~~Lp~GldT~vge~G~-~LSgGQrQriaiARAllr~~~ILiLDEaTSaLD~~tE 1253 (1321)
T 4f4c_A 1179 PSSVTM----AQVEEAARLANIHNFIAELPEGFETRVGDRGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDTESE 1253 (1321)
T ss_dssp TTTSCH----HHHHHHHHHTTCHHHHHTSTTTTCSEETTTSC-SSCHHHHHHHHHHHHHHSCCSEEEEESCCCSTTSHHH
T ss_pred CCCCCH----HHHHHHHHHHCCHHHHHCCCCCCCCEECCCCC-CCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHH
T ss_conf 999999----99999999829849997176789998238891-5699999999999999717998999681115789999
Q ss_pred HHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 99999999988499879999568519999862718899169599993589
Q 000615 1043 AIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1043 ~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
..|++.|++.. +|+|+|+++|+++ ....+|++++|+ +|+++..|++
T Consensus 1254 ~~Iq~~l~~~~-~~~TvI~IAHRLs--Ti~~aD~I~Vld-~G~IvE~Gth 1299 (1321)
T 4f4c_A 1254 KVVQEALDRAR-EGRTCIVIAHRLN--TVMNADCIAVVS-NGTIIEKGTH 1299 (1321)
T ss_dssp HHHHHHHTTTS-SSSEEEEECSSSS--TTTTCSEEEEES-SSSEEEEECH
T ss_pred HHHHHHHHHHC-CCCEEEEECCCHH--HHHHCCEEEEEE-CCEEEEECCH
T ss_conf 99999999973-9998999606899--999699999998-9899998888
No 2
>3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A*
Probab=1.00 E-value=1 Score=611.78 Aligned_cols=774 Identities=19% Similarity=0.216 Sum_probs=376.6
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCC---CCEEEEECCCCCCCCC
Q ss_conf 5167550177883883999985999967999999943939999840199997960799876---7328995479988999
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVP---QRTCAYISQHDLHHGE 259 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~---~r~~aYV~Q~D~h~~~ 259 (1389)
..++|+|+|+.++||+.++|+||+|||||||+++|+|.+++. +|+|.++|+++.+... ++.++||+|++.+++.
T Consensus 402 ~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~---~G~i~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~~~ 478 (1284)
T 3g5u_A 402 EVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPL---DGMVSIDGQDIRTINVRYLREIIGVVSQEPVLFAT 478 (1284)
T ss_dssp SCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCS---EEEEEETTEEGGGSCHHHHHHHEEEECSSCCCCSS
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CEEEEECCEEHHHCCHHHHHHHEEEECCCCCCCCC
T ss_conf 871012545897599889998999997999999980788999---73899999987757999998654898688753776
Q ss_pred CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCCCCCCC
Q ss_conf 99999999720104776125677885599886199999118999999985111103469999998099643454335745
Q 000615 260 MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLDICADTMVGDEM 339 (1389)
Q Consensus 260 lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~~dT~VG~~~ 339 (1389)
||+||+.|+..- .+.++..+++..++. .+. +..|++..||.||+ .
T Consensus 479 -ti~eNi~~g~~~-------------------------~~~~~~~~~~~~~~~-----~~~---i~~l~~g~~t~~~~-~ 523 (1284)
T 3g5u_A 479 -TIAENIRYGRED-------------------------VTMDEIEKAVKEANA-----YDF---IMKLPHQFDTLVGE-R 523 (1284)
T ss_dssp -CHHHHHHHHCSS-------------------------CCHHHHHHHHHHTTC-----HHH---HHHSTTGGGCCCSS-S
T ss_pred -CHHHHHHCCCCC-------------------------CCHHHHHHHHHHHCC-----HHH---HHHCCCCCCCCCCC-C
T ss_conf -699997457989-------------------------999999999998296-----999---97465633450147-8
Q ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECC
Q ss_conf 66788567668999999862996839846988999687999999999998828975999981492138852386999749
Q 000615 340 RRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSE 419 (1389)
Q Consensus 340 ~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~ 419 (1389)
+..||||||||++|||+++.+|++|+||||||+||+.++..+.+.++...+ ++|+++..|.. ++...+|+|++|.+
T Consensus 524 g~~LSgGq~QriaiARal~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~--~~t~i~itH~l--~~i~~~d~i~vl~~ 599 (1284)
T 3g5u_A 524 GAQLSGGQKQRIAIARALVRNPKILLLDEATSALDTESEAVVQAALDKARE--GRTTIVIAHRL--STVRNADVIAGFDG 599 (1284)
T ss_dssp SCSSCHHHHHHHHHHHHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHT--TSEEEEECSCH--HHHTTCSEEEECSS
T ss_pred CCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHCC--CCEEEEEECCH--HHHHCCCEEEEEEC
T ss_conf 786599999999999999529998999798777799999999999999739--99899994077--89974998999989
Q ss_pred CEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHH-HHH-HCCCCCC--CCCCHHHHHHHHHHCCCCHHHHH
Q ss_conf 8189963956799999864987999999677997514720012-556-4059998--77995589999971700065885
Q 000615 420 GQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQE-QYW-FRKNQPY--RYIPVSDFVEGFKSFHMGQQIAS 495 (1389)
Q Consensus 420 G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~-~~~-~~~~~~~--~~~~~~~f~~~~~~s~~~~~~~~ 495 (1389)
|+++++|+++++++. -| ...+.........+.. ... .....+. ............... .....
T Consensus 600 G~i~~~g~~~~l~~~---~~-------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~ 666 (1284)
T 3g5u_A 600 GVIVEQGNHDELMRE---KG-------IYFKLVMTQTAGNEIELGNEACKSKDEIDNLDMSSKDSGSSLIRR---RSTRK 666 (1284)
T ss_dssp SCCCCEECHHHHHHT---TS-------HHHHHHHHTC-------------------------------------------
T ss_pred CEEEEECCHHHHHHC---CC-------HHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC---CCCCC
T ss_conf 999997889999867---87-------799999974300221113333332222234433333333200034---54333
Q ss_pred HHCCCCCC--CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH-------HHHHHHHHH---HHCCC
Q ss_conf 30397776--5679876556766677999999999999999830838999999999-------999999876---54044
Q 000615 496 DLRVPYDK--SQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQL-------TFMSLICMT---VYFRT 563 (1389)
Q Consensus 496 ~l~~~~~~--~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~-------~i~ali~gt---vf~~~ 563 (1389)
....+.+. ...............+.+..++.. +..+..+..-.+.. ...+.+.+. .+...
T Consensus 667 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 738 (1284)
T 3g5u_A 667 SICGPHDQDRKLSTKEALDEDVPPASFWRILKLN--------STEWPYFVVGIFCAIINGGLQPAFSVIFSKVVGVFTNG 738 (1284)
T ss_dssp -----------------CCCCCSCCCTTHHHHHH--------HHTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS
T ss_pred CCCCCCCCCCCCCHHHHHHCCCCCHHHHHHHHHH--------CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_conf 4456422332110245553136625899999984--------51579999999999999999999999999999998556
Q ss_pred CCCCCCCCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHH
Q ss_conf 57777878840157789999999999--7889999987222466661017664236589989998710999989999878
Q 000615 564 EMSVGDMNGGSRYFGALFFSLLNIMF--NGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVAL 641 (1389)
Q Consensus 564 ~~~~~~~~~~~~~~g~lff~ll~~~~--~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i 641 (1389)
.. .........+...++..+....+ ..+...........+-.+-|. -+-..+.+.|+.+++.
T Consensus 739 ~~-~~~~~~~~~~~~~~~~~l~i~~~~~~~~~~~~~~~~~~~~~~~lr~---------~l~~~ll~~~~~ff~~------ 802 (1284)
T 3g5u_A 739 GP-PETQRQNSNLFSLLFLILGIISFITFFLQGFTFGKAGEILTKRLRY---------MVFKSMLRQDVSWFDD------ 802 (1284)
T ss_dssp CS-TTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHCCSHHHHS------
T ss_pred CC-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHCCCHHHHCC------
T ss_conf 85-0336779999999999999999999999999999999999999999---------9999998399888757------
Q ss_pred HHHCCCCCCHHHHHHHHHHHHHHHHHHHH--H-----------HHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
Q ss_conf 86604885128799999999999999899--9-----------9999998406657788899999999999875002469
Q 000615 642 TYYTIGYDPAASRFFKQFLAFFSIHNMSL--P-----------LYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKD 708 (1389)
Q Consensus 642 ~Y~~~g~~~~~~~ff~~~l~~~l~~~~~~--~-----------lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~ 708 (1389)
. ....++....+........... . ...++..+.-+...+. ..++.++++++.+++
T Consensus 803 -----~-~~~~G~l~~rl~~D~~~i~~~~~~~l~~~~~~~~~~~~~~i~~~~~~~~l~l--v~l~~~p~~~~~~~~---- 870 (1284)
T 3g5u_A 803 -----P-KNTTGALTTRLANDAAQVKGATGSRLAVIFQNIANLGTGIIISLIYGWQLTL--LLLAIVPIIAIAGVV---- 870 (1284)
T ss_dssp -----C-SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSSHH--HHHHHHHHHHHHHHH----
T ss_pred -----C-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHH----
T ss_conf -----8-9988999999999999999999999999999999999999999999699999--999999999999999----
Q ss_pred CCHHHHHHHHHHCH------HHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCC-------CCHHHHHH
Q ss_conf 82236899997819------989999999987508854457899887555422000012474335-------72065789
Q 000615 709 DIEPFLRWGYYISP------MMYGQTSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTE-------SNWYWIGV 775 (1389)
Q Consensus 709 ~ip~~~~W~~~isp------~~Y~~~al~~nEf~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~-------~~~~w~~~ 775 (1389)
...++.. -.+...+....|...........+ ......+.+.-... ....|.+
T Consensus 871 -------~~~~~~~~~~~~~~~~~~~~~~~~e~l~gi~ti~a~~-------~e~~~~~~~~~~~~~~~~~~~~~~~~~~- 935 (1284)
T 3g5u_A 871 -------EMKMLSGQALKDKKELEGSGKIATEAIENFRTVVSLT-------REQKFETMYAQSLQIPYRNAMKKAHVFG- 935 (1284)
T ss_dssp -------HHHHHHHHHHHHHHHHHHHHHHHHHHHTTCTTTTTCS-------SHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred -------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-------CHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_conf -------9999999999999999999999999998899999846-------5999999999999999999999999999-
Q ss_pred HHHHHHHHHHHH-HHHHHHH---HCCCCCCCC--CEEEECC------CHHHHC---CCC------CCCHHHHHHCCCCCC
Q ss_conf 999999999999-9999998---048789998--4043021------102110---574------100012221145544
Q 000615 776 GALTGYSFLFNF-LFIAALA---YLNPIGDSN--STVIEED------GEKQRA---SGH------EAEGMQMAVRSSSKT 834 (1389)
Q Consensus 776 g~l~~~~~~f~~-l~~l~l~---~~~~~~~~~--~~~~~~~------~~~~~~---~~~------~~~~~~~~~~~~~~~ 834 (1389)
...++...... .+.+.+. ++...+... .....-. ...... ... ...........
T Consensus 936 -~~~~~~~~~~~~~~~~~~~~g~~lv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~ri~~~l~~---- 1010 (1284)
T 3g5u_A 936 -ITFSFTQAMMYFSYAAAFRFGAYLVTQQLMTFENVLLVFSAIVFGAMAVGQVSSFAPDYAKATVSASHIIRIIEK---- 1010 (1284)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHHCCCSSSCSCSTTHHHHHHHHHHHHHHHHHHTSSSCCSTHHHHHHHHHHHHHHS----
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC----
T ss_conf -999999999999999999999999990980699999999999999999999999999999999999999999838----
Q ss_pred CCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHC
Q ss_conf 55543345676444567826788334013533522112465656515510203588478199996468994678996452
Q 000615 835 VGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLA 914 (1389)
Q Consensus 835 ~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~La 914 (1389)
..........+...+.....++++|+++.++.. ....+|+|+|+.++|||++||+|+||||||||+++|+
T Consensus 1011 ~~~~~~~~~~~~~~~~~~g~i~~~~v~~~y~~~----------~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~ 1080 (1284)
T 3g5u_A 1011 TPEIDSYSTQGLKPNMLEGNVQFSGVVFNYPTR----------PSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLE 1080 (1284)
T ss_dssp CCSSSSCCSSCCCTTTTSCCEEEEEEEBCCSCG----------GGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCCEEEEEEEEECCCC----------CCCEEECCEEEEECCCCEEEEECCCCCCHHHHHHHHH
T ss_conf 876666555665456777857999989977999----------9870020305997699889998899997899999994
Q ss_pred CCCCCCEEEEEEEECCCCCC---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCC
Q ss_conf 99889637999999590388---231202166842489789999999999988873059998399999999999998299
Q 000615 915 GRKTGGYIEGDIKISGYPKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVEL 991 (1389)
Q Consensus 915 g~~~~g~~~G~i~i~g~~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L 991 (1389)
|...+ .+|+|.++|.+.. ...+++.++||+|++.++ ..||+||+.+.... ...+.++ +++.++..++
T Consensus 1081 g~~~p--~~G~I~i~g~~i~~~~~~~~r~~i~~v~Q~~~l~-~~ti~eNi~~~~~~---~~~~~~~----i~~~~~~~~~ 1150 (1284)
T 3g5u_A 1081 RFYDP--MAGSVFLDGKEIKQLNVQWLRAQLGIVSQEPILF-DCSIAENIAYGDNS---RVVSYEE----IVRAAKEANI 1150 (1284)
T ss_dssp TSSCC--SEEEEESSSSCTTSSCHHHHTTSCEEEESSCCCC-SSBHHHHHTCCCSS---CCCCHHH----HHHHHHHHTC
T ss_pred CCCCC--CCCEEEECCEECCCCCHHHHHHCEEEECCCCCCC-CCCHHHHHHCCCCC---CCCCHHH----HHHHHHHHCC
T ss_conf 68678--9977989999800078999970268987787406-66699997466877---8999999----9999998395
Q ss_pred C-------CCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEC
Q ss_conf 5-------543333469988788998999999999996399972030799999999999999999998849987999956
Q 000615 992 K-------SLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIH 1064 (1389)
Q Consensus 992 ~-------~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~H 1064 (1389)
. +-.|+.+|..| ..||||||||++|||+|+.+|+||+|||||+|||+.++..|++.+++.. .|+|+|+++|
T Consensus 1151 ~~~i~~l~~gldt~vge~G-~~LSgGq~Qrv~iARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~-~~~tvi~isH 1228 (1284)
T 3g5u_A 1151 HQFIDSLPDKYNTRVGDKG-TQLSGGQKQRIAIARALVRQPHILLLDEATSALDTESEKVVQEALDKAR-EGRTCIVIAH 1228 (1284)
T ss_dssp HHHHSSTTTGGGCBCSTTS-CSSCHHHHHHHHHHHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHS-SSSCEEEECS
T ss_pred HHHHHHCCCCCCCCCCCCC-CCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHC-CCCEEEEEEC
T ss_conf 9999727042456117888-9338999999999999974999999868755579999999999999867-9998999955
Q ss_pred CCCHHHHHHHCEEEEEECCCEEEEECCC
Q ss_conf 8519999862718899169599993589
Q 000615 1065 QPSIDIFEAFDELLLLKRGGRVIYAGPL 1092 (1389)
Q Consensus 1065 qps~~~~~~fD~illl~~gG~~~~~G~~ 1092 (1389)
+++ .+ ..+|++++|. +|+++..|++
T Consensus 1229 ~l~-~i-~~~dri~vl~-~G~i~~~g~~ 1253 (1284)
T 3g5u_A 1229 RLS-TI-QNADLIVVIQ-NGKVKEHGTH 1253 (1284)
T ss_dssp CTT-GG-GSCSEEEEEE-TBEEEEEECH
T ss_pred CHH-HH-HCCCEEEEEE-CCEEEEECCH
T ss_conf 879-99-8099899998-9989997789
No 3
>3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B*
Probab=1.00 E-value=1 Score=460.83 Aligned_cols=437 Identities=24% Similarity=0.285 Sum_probs=307.7
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 67550177883883999985999967999999943939999840199---------9979607998-----767328995
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1389)
Q Consensus 185 ~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I---------~~nG~~~~~~-----~~~r~~aYV 250 (1389)
.+|+|+| .+++|++++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 106 ~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~---~G~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~i~~~ 181 (607)
T 3bk7_A 106 FVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPN---LCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPVVK 181 (607)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCC---TTTTCCCHHHHHHHTTTSTHHHHHHHHHHTSCCCEEE
T ss_pred EEECCCC-CCCCCCEEEEECCCCCHHHHHHHHHHCCCCCC---CCCCCCCCCHHHHEECCEEHHHHHHHHHHHHCCEEEE
T ss_conf 4048989-88989999999999972999999985799878---7854666301331368776134323455653446886
Q ss_pred CCCCCCCC---CCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 47998899---999999999720104776125677885599886199999118999999985111103469999998099
Q 000615 251 SQHDLHHG---EMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1389)
Q Consensus 251 ~Q~D~h~~---~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL 327 (1389)
.|.-...+ ..||+|++..... ...++.+++.+||
T Consensus 182 ~q~~~~~~~~~~~tv~e~l~~~~~-------------------------------------------~~~~~~~L~~lgL 218 (607)
T 3bk7_A 182 PQYVDLLPKAVKGKVRELLKKVDE-------------------------------------------VGKFEEVVKELEL 218 (607)
T ss_dssp CSCGGGGGGTCCSBHHHHHHHTCC-------------------------------------------SSCHHHHHHHTTC
T ss_pred ECHHHHCHHHCCCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 320431302200509999631679-------------------------------------------9999999997599
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH
Q ss_conf 64345433574566788567668999999862996839846988999687999999999998828975999981492138
Q 000615 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1389)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~ 407 (1389)
++..|..+++ |||||||||+||++|+.+|++|+|||||+|||..++.++.+.|+++.+ .+.|++++.|.. .++
T Consensus 219 ~~~~~~~~~~-----LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvIivsHdl-~~~ 291 (607)
T 3bk7_A 219 ENVLDRELHQ-----LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLAN-EGKAVLVVEHDL-AVL 291 (607)
T ss_dssp TTGGGSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSCH-HHH
T ss_pred CCHHCCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECCH-HHH
T ss_conf 7043798056-----999999999999998459999999797435899999999999999986-699899996485-898
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85238699974981899639567999998649879999996779975147200125564059998779955899999717
Q 000615 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1389)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1389)
..++|+|++|.++...| |.. ..+
T Consensus 292 ~~~adri~vl~~~~~~~-g~~----------------------------------------~~~---------------- 314 (607)
T 3bk7_A 292 DYLSDVIHVVYGEPGVY-GIF----------------------------------------SKP---------------- 314 (607)
T ss_dssp HHHCSEEEEEESCTTTE-EEE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCC-CEE----------------------------------------CCC----------------
T ss_conf 86589999977986445-212----------------------------------------241----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00065885303977765679876556766677999999999999999830838999999999999999876540445777
Q 000615 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1389)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1389)
+. . +... ...+
T Consensus 315 ----------------------------~~--~---------~~~i------------------~~~~------------ 325 (607)
T 3bk7_A 315 ----------------------------KG--T---------RNGI------------------NEFL------------ 325 (607)
T ss_dssp ----------------------------EE--H---------HHHH------------------HHHH------------
T ss_pred ----------------------------HH--H---------HHHH------------------HHHH------------
T ss_conf ----------------------------32--7---------9999------------------9997------------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 78788401577899999999997889999987222466661017664236589989998710999989999878866048
Q 000615 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1389)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g 647 (1389)
T Consensus 326 -------------------------------------------------------------------------------- 325 (607)
T 3bk7_A 326 -------------------------------------------------------------------------------- 325 (607)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 85128799999999999999899999999984066577888999999999998750024698223689999781998999
Q 000615 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1389)
Q Consensus 648 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~ 727 (1389)
.|+.. ...
T Consensus 326 -----------------------------------------------------~~~~~-~~~------------------ 333 (607)
T 3bk7_A 326 -----------------------------------------------------QGYLK-DEN------------------ 333 (607)
T ss_dssp -----------------------------------------------------HTEET-TTT------------------
T ss_pred -----------------------------------------------------HHCCH-HHH------------------
T ss_conf -----------------------------------------------------51013-455------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99999875088544578998875554220000124743357206578999999999999999999980487899984043
Q 000615 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1389)
Q Consensus 728 ~al~~nEf~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~ 807 (1389)
.+.. ... . .+.
T Consensus 334 ----------~~~~---~~~---~-----------~~~------------------------------------------ 344 (607)
T 3bk7_A 334 ----------VRFR---PYE---I-----------RFT------------------------------------------ 344 (607)
T ss_dssp ----------EECC---SSC---C-----------CCC------------------------------------------
T ss_pred ----------HHCC---CCC---C-----------CCC------------------------------------------
T ss_conf ----------4301---212---3-----------456------------------------------------------
Q ss_pred ECCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCE
Q ss_conf 02110211057410001222114554455543345676444567826788334013533522112465656515510203
Q 000615 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1389)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1389)
.. . .. .. ......++++|++..+ +. ..|++++
T Consensus 345 ------------------~~-------~--~~-~~------~~~~~~l~~~~l~~~~-------------~~-~~l~~~~ 376 (607)
T 3bk7_A 345 ------------------KL-------S--ER-VD------VERETLVEYPRLVKDY-------------GS-FKLEVEP 376 (607)
T ss_dssp ------------------CS-------T--TS-CC------CCCCEEEEECCEEEEC-------------SS-CEEEECC
T ss_pred ------------------CC-------C--CC-CC------CCCCEEEEEECEEEEE-------------CC-EEEEECC
T ss_conf ------------------57-------7--75-44------4675289991309874-------------43-4899351
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 58847819999646899467899645299889637999999590388231202166842489789999999999988873
Q 000615 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1389)
Q Consensus 888 ~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1389)
+.+++||++||+|+||||||||+++|+|...+ .+|.|.+ .+.+||++|+....+.+||.|++......
T Consensus 377 ~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~I~~----------~~~i~~v~Q~~~~~~~~tv~e~~~~~~~~ 444 (607)
T 3bk7_A 377 GEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKVEW----------DLTVAYKPQYIKAEYEGTVYELLSKIDSS 444 (607)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBSCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------EEEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 53279989999999998999999999669888--8628999----------02799980576677898499999753125
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 05999839999999999999829955433334699887889989999999999963999720307999999999999999
Q 000615 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1389)
Q Consensus 968 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~ 1047 (1389)
.. ...+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..++..+++
T Consensus 445 ~~-------~~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~QRv~iAraL~~~p~lLlLDEPt~~LD~~~~~~l~~ 512 (607)
T 3bk7_A 445 KL-------NSNFYKTELLKPLGIIDLYDRNVE-----DLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 512 (607)
T ss_dssp HH-------HCHHHHHHTHHHHTCTTTTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CC-------CHHHHHHHHHHHCCCCHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 87-------789999999987699337549922-----379999999999999974899899968744789999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999988-49987999956851999986271889916-9599993589853
Q 000615 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1389)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqps~~~~~~fD~illl~~-gG~~~~~G~~~~~ 1095 (1389)
.|++++ +.|.|||+++|+.. ++...+|++++|.. .|.+...|++...
T Consensus 513 ~l~~l~~~~g~tvi~vsHd~~-~~~~~adrv~vl~~~~g~~~~~g~p~~~ 561 (607)
T 3bk7_A 513 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLIVFEGEPGRHGRALPPMGM 561 (607)
T ss_dssp HHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEECCCCCEEEECCCHHHH
T ss_conf 999999747989999909899-9998699999995983069742898999
No 4
>3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus}
Probab=1.00 E-value=1 Score=453.90 Aligned_cols=215 Identities=23% Similarity=0.257 Sum_probs=155.1
Q ss_pred CCEEEEEEEEEEECCEEEEEECCCCCCHHHHH---------------------HHHHCCCCCCC----CCEEEEEECCEE
Q ss_conf 51675501778838839999859999679999---------------------99943939999----840199997960
Q 000615 183 SVRILKDVSGIVKPSRMTLLLGPPGAGKTTLM---------------------LALAGKLGKDL----RASGKITYCGHE 237 (1389)
Q Consensus 183 ~~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL---------------------~~LaG~l~~~~----~vsG~I~~nG~~ 237 (1389)
..++|+|||+.+++|++++|+||||||||||+ +.+.|...++. ...|.|.++|..
T Consensus 30 ~~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~ 109 (670)
T 3ux8_A 30 RAHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKT 109 (670)
T ss_dssp CSTTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC
T ss_pred CCCCEECCEEEECCCCEEEEECCCCCCHHHHHCCCCCCCCCCCCCCCCHHHHHHHHCCCCCCCCCCEECCCCCEEECCCH
T ss_conf 76402343899879989999899999988871510123211100011002445553034567756321356415744720
Q ss_pred CCCCCCCCEEEEECCCCCC-------------------CCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCH
Q ss_conf 7998767328995479988-------------------999999999997201047761256778855998861999991
Q 000615 238 LNEFVPQRTCAYISQHDLH-------------------HGEMTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDP 298 (1389)
Q Consensus 238 ~~~~~~~r~~aYV~Q~D~h-------------------~~~lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~ 298 (1389)
.... +++.++|+.|...+ ++.+||+|++.+....... ..++.. ...
T Consensus 110 ~~~~-~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~-----------~~~~~~---~~~ 174 (670)
T 3ux8_A 110 TSRN-PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELT-----------EKEAQI---ARL 174 (670)
T ss_dssp ------CCBHHHHTTCC-------------------------CC------------------------------------
T ss_pred HHCC-CHHCEEEEECHHHHHHHHHHHHCCCCCCCCCCCCCCCCHHHHHHHHHCCCCC-----------HHHHHH---HHH
T ss_conf 1025-5000046511256677777531111234443334578599999975203643-----------145677---888
Q ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCC-CCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC--EEEEECCCCCCCH
Q ss_conf 18999999985111103469999998099643-45433574566788567668999999862996--8398469889996
Q 000615 299 EIDAFMKAVAVAGQETSLVTDYVLKILGLDIC-ADTMVGDEMRRGISGGQKKRVTTGEMLVGTAN--VLYMDEISTGLDS 375 (1389)
Q Consensus 299 ~~~~~~~a~~~~~~~~~~~~d~il~~lgL~~~-~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~--vLlLDEpTSGLDs 375 (1389)
..++ .... -.+++.+||++. .|..++. |||||||||+||++|+.+|+ +|+|||||+|||+
T Consensus 175 ~~~~-----------~~~~-~~~l~~~gL~~~~~~~~~~~-----LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~ 237 (670)
T 3ux8_A 175 ILRE-----------IRDR-LGFLQNVGLDYLTLSRSAGT-----LSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQ 237 (670)
T ss_dssp ---------------CHHH-HHHHHHTTCTTCCTTCBGGG-----SCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCG
T ss_pred HHHH-----------HHHH-HHHHHHCCCCHHHHCCCCCC-----CCHHHHHHHHHHHHHHHCCCCCEEEEECCCCCCCH
T ss_conf 8999-----------9999-98999759843441497001-----89999999999999962899878999798568999
Q ss_pred HHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEE------CCCEEEEECCHHHHH
Q ss_conf 879999999999988289759999814921388523869997------498189963956799
Q 000615 376 STTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILL------SEGQIVYQGPRDNVL 432 (1389)
Q Consensus 376 ~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilL------s~G~ivy~Gp~~~~~ 432 (1389)
.+..++.+.|+++.. .+.|+|+..|.. +....+|+|++| .+|++++.|+.+++.
T Consensus 238 ~~~~~l~~~l~~l~~-~g~tvi~vtHd~--~~~~~~d~ii~l~~g~~~~~G~i~~~g~~~~~~ 297 (670)
T 3ux8_A 238 RDNDRLIATLKSMRD-LGNTLIVVEHDE--DTMLAADYLIDIGPGAGIHGGEVVAAGTPEEVM 297 (670)
T ss_dssp GGHHHHHHHHHHHHH-TTCEEEEECCCH--HHHHHCSEEEEECSSSGGGCCSEEEEECHHHHH
T ss_pred HHHHHHHHHHHHHHH-CCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHHHHH
T ss_conf 999999999999997-499899995787--999629989994466656698899740899986
No 5
>1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus}
Probab=1.00 E-value=1 Score=450.52 Aligned_cols=437 Identities=23% Similarity=0.260 Sum_probs=305.5
Q ss_pred EEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEE---------EECCEECCCC-----CCCCEEEEE
Q ss_conf 67550177883883999985999967999999943939999840199---------9979607998-----767328995
Q 000615 185 RILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKI---------TYCGHELNEF-----VPQRTCAYI 250 (1389)
Q Consensus 185 ~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I---------~~nG~~~~~~-----~~~r~~aYV 250 (1389)
.+|+|+| .+++|+.++|+|||||||||||++|+|.+.++ +|++ .++|.+.... ..+..++|+
T Consensus 36 ~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~---~G~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 111 (538)
T 1yqt_A 36 FVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPN---LCGDNDSWDGVIRAFRGNELQNYFEKLKNGEIRPVVK 111 (538)
T ss_dssp CEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCC---TTTTCCSHHHHHHHTTTSTHHHHHHHHHTTSCCCEEE
T ss_pred CCCCCCC-CCCCCCEEEEECCCCCCHHHHHHHHHCCCCCC---CCCCCCCHHHHHHHHCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 0026768-67999999999999997999999996799888---8866753145677618840777787888874446653
Q ss_pred CCCCCCCCC---CCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCC
Q ss_conf 479988999---99999999720104776125677885599886199999118999999985111103469999998099
Q 000615 251 SQHDLHHGE---MTVRETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGL 327 (1389)
Q Consensus 251 ~Q~D~h~~~---lTVrEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL 327 (1389)
.|+....+. .||+|++..... ...++.+++.+||
T Consensus 112 ~q~~~~~~~~~~~~v~e~~~~~~~-------------------------------------------~~~~~~~l~~lgl 148 (538)
T 1yqt_A 112 PQYVDLIPKAVKGKVIELLKKADE-------------------------------------------TGKLEEVVKALEL 148 (538)
T ss_dssp CSCGGGSGGGCCSBHHHHHHHHCS-------------------------------------------SSCHHHHHHHTTC
T ss_pred HHHHHHCCHHHHCCHHHHHHHHHH-------------------------------------------HHHHHHHHHHCCC
T ss_conf 223432101211219999743139-------------------------------------------9999999987699
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHH
Q ss_conf 64345433574566788567668999999862996839846988999687999999999998828975999981492138
Q 000615 328 DICADTMVGDEMRRGISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPET 407 (1389)
Q Consensus 328 ~~~~dT~VG~~~~rGLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~ 407 (1389)
++..|..+++ |||||||||+||++|+.+|++|+|||||++||..++.++.+.|+++.+ .+.|+|+..|. ..++
T Consensus 149 ~~~~~~~~~~-----LSgGekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~-~g~tvi~vsHd-~~~~ 221 (538)
T 1yqt_A 149 ENVLEREIQH-----LSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSE-EGKSVLVVEHD-LAVL 221 (538)
T ss_dssp TTTTTSBGGG-----CCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHH-TTCEEEEECSC-HHHH
T ss_pred CHHHHCCHHH-----CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHH-CCCEEEEEECC-HHHH
T ss_conf 7366098354-----899999999999998469999999897345798899999999999996-59879999478-8999
Q ss_pred HHHCCEEEEECCCEEEEECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHC
Q ss_conf 85238699974981899639567999998649879999996779975147200125564059998779955899999717
Q 000615 408 YDLFDDIILLSEGQIVYQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSF 487 (1389)
Q Consensus 408 ~~lfD~IilLs~G~ivy~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s 487 (1389)
..++|+|++|.+|...|. .. ..+
T Consensus 222 ~~~~dri~vl~~~~~~~~-~~----------------------------------------~~~---------------- 244 (538)
T 1yqt_A 222 DYLSDIIHVVYGEPGVYG-IF----------------------------------------SQP---------------- 244 (538)
T ss_dssp HHHCSEEEEEEEETTTEE-EE----------------------------------------CCC----------------
T ss_pred HHHCCEEEEECCCCCCCC-CC----------------------------------------CCH----------------
T ss_conf 976889999868632440-22----------------------------------------553----------------
Q ss_pred CCCHHHHHHHCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
Q ss_conf 00065885303977765679876556766677999999999999999830838999999999999999876540445777
Q 000615 488 HMGQQIASDLRVPYDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSV 567 (1389)
Q Consensus 488 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~ 567 (1389)
+. . +.. +.....
T Consensus 245 ----------------------------~~--~---------~~~------------------~~~~~~----------- 256 (538)
T 1yqt_A 245 ----------------------------KG--T---------RNG------------------INEFLR----------- 256 (538)
T ss_dssp ----------------------------EE--H---------HHH------------------HHHHHH-----------
T ss_pred ----------------------------HH--H---------HHH------------------HHHHHH-----------
T ss_conf ----------------------------55--8---------999------------------998764-----------
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCC
Q ss_conf 78788401577899999999997889999987222466661017664236589989998710999989999878866048
Q 000615 568 GDMNGGSRYFGALFFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIG 647 (1389)
Q Consensus 568 ~~~~~~~~~~g~lff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g 647 (1389)
T Consensus 257 -------------------------------------------------------------------------------- 256 (538)
T 1yqt_A 257 -------------------------------------------------------------------------------- 256 (538)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHH
Q ss_conf 85128799999999999999899999999984066577888999999999998750024698223689999781998999
Q 000615 648 YDPAASRFFKQFLAFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQ 727 (1389)
Q Consensus 648 ~~~~~~~ff~~~l~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~ 727 (1389)
|+...
T Consensus 257 ------------------------------------------------------~~~~~--------------------- 261 (538)
T 1yqt_A 257 ------------------------------------------------------GYLKD--------------------- 261 (538)
T ss_dssp ------------------------------------------------------TEETT---------------------
T ss_pred ------------------------------------------------------HCCCH---------------------
T ss_conf ------------------------------------------------------02300---------------------
Q ss_pred HHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEE
Q ss_conf 99999875088544578998875554220000124743357206578999999999999999999980487899984043
Q 000615 728 TSLLVNEFLGGRWDAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVI 807 (1389)
Q Consensus 728 ~al~~nEf~~~~~~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~ 807 (1389)
.... ... ... .+.
T Consensus 262 ----------~~~~--~~~-----~~~--------~~~------------------------------------------ 274 (538)
T 1yqt_A 262 ----------ENVR--FRP-----YEI--------KFT------------------------------------------ 274 (538)
T ss_dssp ----------TTEE--CSS-----SCC--------CCC------------------------------------------
T ss_pred ----------HHHC--CCC-----CCC--------CCC------------------------------------------
T ss_conf ----------2320--344-----455--------545------------------------------------------
Q ss_pred ECCCHHHHCCCCCCCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCE
Q ss_conf 02110211057410001222114554455543345676444567826788334013533522112465656515510203
Q 000615 808 EEDGEKQRASGHEAEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVS 887 (1389)
Q Consensus 808 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs 887 (1389)
.. . .. .. +.....++++|++..+ +. ..|++++
T Consensus 275 ------------------~~-------~--~~--~~-----~~~~~~l~~~~l~~~~-------------~~-~~l~~~~ 306 (538)
T 1yqt_A 275 ------------------KT-------G--ER--VE-----IERETLVTYPRLVKDY-------------GS-FRLEVEP 306 (538)
T ss_dssp ------------------CS-------S--GG--GS-----SCCCEEEEECCEEEEE-------------TT-EEEEECC
T ss_pred ------------------CC-------C--CC--CC-----CCCCEEEEEEEEEEEE-------------CC-EEEEECC
T ss_conf ------------------57-------7--65--56-----6787189993079998-------------99-8999074
Q ss_pred EEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHH
Q ss_conf 58847819999646899467899645299889637999999590388231202166842489789999999999988873
Q 000615 888 GVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYESLLYSAWL 967 (1389)
Q Consensus 888 ~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~l 967 (1389)
+.+++||++||+|+||||||||+++|+|...+ ..|.|.+ ...+||++|+....+.+||.|.+......
T Consensus 307 ~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p--~~G~i~~----------~~~i~~v~Q~~~~~~~~tv~~~~~~~~~~ 374 (538)
T 1yqt_A 307 GEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEP--TEGKIEW----------DLTVAYKPQYIKADYEGTVYELLSKIDAS 374 (538)
T ss_dssp EEEETTCEEEEECCTTSSHHHHHHHHHTSSCC--SBCCCCC----------CCCEEEECSSCCCCCSSBHHHHHHHHHHH
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCEEEEE----------CCEEEEEECCCCCCCCCCHHHHHHHHHCC
T ss_conf 41289989999889999999999999679989--9718998----------74699982677678888599999864036
Q ss_pred HCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHH
Q ss_conf 05999839999999999999829955433334699887889989999999999963999720307999999999999999
Q 000615 968 RLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMR 1047 (1389)
Q Consensus 968 r~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~ 1047 (1389)
... ..+.++++++.+++.+..+..++ .||||||||+.||++|+.+|++|+|||||+|||..++..+++
T Consensus 375 ~~~-------~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGe~qrv~lAraL~~~p~lLlLDEPt~~LD~~~~~~i~~ 442 (538)
T 1yqt_A 375 KLN-------SNFYKTELLKPLGIIDLYDREVN-----ELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSR 442 (538)
T ss_dssp HHT-------CHHHHHHTTTTTTCGGGTTSBGG-----GCCHHHHHHHHHHHHHTSCCSEEEEECTTTTCCHHHHHHHHH
T ss_pred CCC-------HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCCCCCHHHHHHHHH
T ss_conf 887-------89999999997499156539944-----489999999999999972899899939801089999999999
Q ss_pred HHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCC
Q ss_conf 999988-49987999956851999986271889916-9599993589853
Q 000615 1048 TVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHE 1095 (1389)
Q Consensus 1048 ~l~~~~-~~g~tvi~t~Hqps~~~~~~fD~illl~~-gG~~~~~G~~~~~ 1095 (1389)
.|++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++...
T Consensus 443 ~l~~l~~~~g~tvi~vsHd~~-~~~~~~drv~vl~~~~~~~~~~g~~~~~ 491 (538)
T 1yqt_A 443 AIRHLMEKNEKTALVVEHDVL-MIDYVSDRLMVFEGEPGKYGRALPPMGM 491 (538)
T ss_dssp HHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEH
T ss_pred HHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHH
T ss_conf 999999867989999939899-9999689999990883157404898999
No 6
>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A
Probab=1.00 E-value=1 Score=447.34 Aligned_cols=427 Identities=21% Similarity=0.305 Sum_probs=299.6
Q ss_pred CEEEEEEEEEEECCEEEEEECCCCCCHHHHHHHHHCCCCCCCCCEEEEEECCEECCCCCCCCEEEEECCC-CCCCCCCCH
Q ss_conf 1675501778838839999859999679999999439399998401999979607998767328995479-988999999
Q 000615 184 VRILKDVSGIVKPSRMTLLLGPPGAGKTTLMLALAGKLGKDLRASGKITYCGHELNEFVPQRTCAYISQH-DLHHGEMTV 262 (1389)
Q Consensus 184 ~~IL~~VSg~i~pG~ltaIlGpsGSGKSTLL~~LaG~l~~~~~vsG~I~~nG~~~~~~~~~r~~aYV~Q~-D~h~~~lTV 262 (1389)
..+|+|+|+.+++|++++|+|||||||||||++|+| |+| +|.+... +...+|++|+ +..++.+||
T Consensus 448 ~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag---------G~i--~g~~~~~---~~~~~~v~q~~~~~~~~ltv 513 (986)
T 2iw3_A 448 KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN---------GQV--DGFPTQE---ECRTVYVEHDIDGTHSDTSV 513 (986)
T ss_dssp EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH---------TCS--TTCCCTT---TSCEEETTCCCCCCCTTSBH
T ss_pred EEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHHC---------CCC--CCCCCCC---CEEEEEECCCCCCCCCCCCH
T ss_conf 876741269981897899999999879999999948---------986--7976635---41699973564324557809
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHCCC-CCCCCCCCCCCCC
Q ss_conf 999997201047761256778855998861999991189999999851111034699999980996-4345433574566
Q 000615 263 RETLDFSGRCLGVGTRYELLAELSRREKQAGIKPDPEIDAFMKAVAVAGQETSLVTDYVLKILGLD-ICADTMVGDEMRR 341 (1389)
Q Consensus 263 rEtL~Faa~~~~~g~~~~~~~~~s~~ek~~~i~p~~~~~~~~~a~~~~~~~~~~~~d~il~~lgL~-~~~dT~VG~~~~r 341 (1389)
.|++.+ ...+. + ..++.+++.+||+ +..|..+++
T Consensus 514 ~e~l~~--~~~~~------------~---------------------------~~v~~~L~~lgL~~~~~~~~~~~---- 548 (986)
T 2iw3_A 514 LDFVFE--SGVGT------------K---------------------------EAIKDKLIEFGFTDEMIAMPISA---- 548 (986)
T ss_dssp HHHHHT--TCSSC------------H---------------------------HHHHHHHHHTTCCHHHHHSBGGG----
T ss_pred HHHHHH--HHCCH------------H---------------------------HHHHHHHHHCCCCHHHHCCCCCC----
T ss_conf 999998--61279------------9---------------------------99999999869984464398020----
Q ss_pred CCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEEEECCCCHHHHHCCEEEEECCCE
Q ss_conf 78856766899999986299683984698899968799999999999882897599998149213885238699974981
Q 000615 342 GISGGQKKRVTTGEMLVGTANVLYMDEISTGLDSSTTFQICKFLKQMVHILDVTMIVALLQPAPETYDLFDDIILLSEGQ 421 (1389)
Q Consensus 342 GLSGGQKkRvsiaeaLv~~~~vLlLDEpTSGLDs~ta~~I~~~Lr~la~~~~~Tviisl~Qps~e~~~lfD~IilLs~G~ 421 (1389)
||||||||++||++++.+|++|+|||||+|||..+..++.+.|++ .+.|+|++.|. ..++.+.+|+|++|.+|+
T Consensus 549 -LSGGqkQRvaLArAL~~~P~lLLLDEPTs~LD~~~~~~l~~~L~~----~g~tvIivSHd-l~~l~~~adrii~L~~G~ 622 (986)
T 2iw3_A 549 -LSGGWKMKLALARAVLRNADILLLDEPTNHLDTVNVAWLVNYLNT----CGITSITISHD-SVFLDNVCEYIINYEGLK 622 (986)
T ss_dssp -CCHHHHHHHHHHHHHHTTCSEEEEESTTTTCCHHHHHHHHHHHHH----SCSEEEEECSC-HHHHHHHCSEEEEEETTE
T ss_pred -CCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHHHHHHHHHHHHH----CCCEEEEEECC-HHHHHHHCCEEEEEECCE
T ss_conf -799999999999999649999999797667999999999999986----79989999798-899998689999997994
Q ss_pred EE-EECCHHHHHHHHHHCCCCCCCCCCHHHHHHHHCCCCCHHHHHHCCCCCCCCCCHHHHHHHHHHCCCCHHHHHHHCCC
Q ss_conf 89-96395679999986498799999967799751472001255640599987799558999997170006588530397
Q 000615 422 IV-YQGPRDNVLEFFEHMGFKCPERKGVADFLQEVTSKKDQEQYWFRKNQPYRYIPVSDFVEGFKSFHMGQQIASDLRVP 500 (1389)
Q Consensus 422 iv-y~Gp~~~~~~~F~~lGf~cp~~~~~adfl~ev~s~~~~~~~~~~~~~~~~~~~~~~f~~~~~~s~~~~~~~~~l~~~ 500 (1389)
++ |.|+.+++... .|. ...
T Consensus 623 iv~~~G~~~e~~~~-------~~~----------------~~~------------------------------------- 642 (986)
T 2iw3_A 623 LRKYKGNFTEFVKK-------CPA----------------AKA------------------------------------- 642 (986)
T ss_dssp EEEEESCHHHHHHH-------CGG----------------GGG-------------------------------------
T ss_pred EECCCCCHHHHHHH-------HHH----------------HHH-------------------------------------
T ss_conf 42677999999861-------488----------------999-------------------------------------
Q ss_pred CCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCHHHHHH
Q ss_conf 77656798765567666779999999999999998308389999999999999998765404457777878840157789
Q 000615 501 YDKSQAHPASLVKEKYGISKWELFRACFAREWLLMKRNSFVYIFKTFQLTFMSLICMTVYFRTEMSVGDMNGGSRYFGAL 580 (1389)
Q Consensus 501 ~~~~~~~~~~~~~~~~~~s~~~~~~~~~~R~~~~~~R~~~~~~~~~~~~~i~ali~gtvf~~~~~~~~~~~~~~~~~g~l 580 (1389)
+ +... ....
T Consensus 643 ---------------~--------------------------------------------~~l~--~~~~---------- 651 (986)
T 2iw3_A 643 ---------------Y--------------------------------------------EELS--NTDL---------- 651 (986)
T ss_dssp ---------------S--------------------------------------------SSTT--TCCC----------
T ss_pred ---------------H--------------------------------------------HHHH--HHHH----------
T ss_conf ---------------9--------------------------------------------8644--5443----------
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q ss_conf 99999999978899999872224666610176642365899899987109999899998788660488512879999999
Q 000615 581 FFSLLNIMFNGFAENAMTVLRLPIFYKQRDHLFYPSWAFALPIWLLRIPISILDSTIWVALTYYTIGYDPAASRFFKQFL 660 (1389)
Q Consensus 581 ff~ll~~~~~~~~~~~~~~~~~pvf~kqr~~~~y~~~a~~la~~l~~iP~~~~~~~i~~~i~Y~~~g~~~~~~~ff~~~l 660 (1389)
T Consensus 652 -------------------------------------------------------------------------------- 651 (986)
T 2iw3_A 652 -------------------------------------------------------------------------------- 651 (986)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred --------------------------------------------------------------------------------
T ss_conf --------------------------------------------------------------------------------
Q ss_pred HHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHCHHHHHHHHHHHHHHCCCCC
Q ss_conf 99999998999999999840665778889999999999987500246982236899997819989999999987508854
Q 000615 661 AFFSIHNMSLPLYRLVAAVGRTEVISNTLGTFILLIMMSLGGFVMAKDDIEPFLRWGYYISPMMYGQTSLLVNEFLGGRW 740 (1389)
Q Consensus 661 ~~~l~~~~~~~lf~~iaa~~~~~~~a~~~~~~~~~~~~l~~Gf~i~~~~ip~~~~W~~~isp~~Y~~~al~~nEf~~~~~ 740 (1389)
.+
T Consensus 652 ------------------------------------------------------------------------------~~ 653 (986)
T 2iw3_A 652 ------------------------------------------------------------------------------EF 653 (986)
T ss_dssp ------------------------------------------------------------------------------CC
T ss_pred ------------------------------------------------------------------------------HC
T ss_conf ------------------------------------------------------------------------------20
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCEEEECCCHHHHCCCCC
Q ss_conf 45789988755542200001247433572065789999999999999999999804878999840430211021105741
Q 000615 741 DAQNKDPSINQPTIGKVLLKIRGFSTESNWYWIGVGALTGYSFLFNFLFIAALAYLNPIGDSNSTVIEEDGEKQRASGHE 820 (1389)
Q Consensus 741 ~~~~~~~~~~~~~~G~~~l~~~g~~~~~~~~w~~~g~l~~~~~~f~~l~~l~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 820 (1389)
. .+.+ + ..
T Consensus 654 ~--~p~~-------~--------~~------------------------------------------------------- 661 (986)
T 2iw3_A 654 K--FPEP-------G--------YL------------------------------------------------------- 661 (986)
T ss_dssp C--CCCC-------C--------CC-------------------------------------------------------
T ss_pred C--CCCC-------C--------CC-------------------------------------------------------
T ss_conf 3--5655-------5--------43-------------------------------------------------------
Q ss_pred CCHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEEC
Q ss_conf 00012221145544555433456764445678267883340135335221124656565155102035884781999964
Q 000615 821 AEGMQMAVRSSSKTVGAAQNVTNRGMILPFQPLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMG 900 (1389)
Q Consensus 821 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G 900 (1389)
.. . .. .....+.++|+++.++ ...+.+|+|+|+.+++|+++||+|
T Consensus 662 -----~~-------~------~~------~~~~mL~v~nLs~~Y~-----------g~~~~iL~dVSl~I~~GeivaIiG 706 (986)
T 2iw3_A 662 -----EG-------V------KT------KQKAIVKVTNMEFQYP-----------GTSKPQITDINFQCSLSSRIAVIG 706 (986)
T ss_dssp -----TT-------C------CS------TTSEEEEEEEEEECCT-----------TCSSCSEEEEEEEEETTCEEEECS
T ss_pred -----CC-------C------CC------CCCCEEEEEEEEEEEC-----------CCCCEEEECCEEEECCCCEEEEEC
T ss_conf -----34-------5------66------7870699984699818-----------987413432279982897899989
Q ss_pred CCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCC----CCCCCHHHHHHHHHHH--------H
Q ss_conf 689946789964529988963799999959038823120216684248978----9999999999988873--------0
Q 000615 901 VSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIH----SPYVTVYESLLYSAWL--------R 968 (1389)
Q Consensus 901 ~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~----~~~lTv~E~l~f~a~l--------r 968 (1389)
+||||||||+++|+|...+ .+|+|.++|.. .+||++|+..+ ....|++|.+.+.-.. +
T Consensus 707 pNGSGKSTLLklLaGll~P--~sG~I~~~~~~--------~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~ 776 (986)
T 2iw3_A 707 PNGAGKSTLINVLTGELLP--TSGEVYTHENC--------RIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDR 776 (986)
T ss_dssp CCCHHHHHHHHHHTTSSCC--SEEEEEECTTC--------CEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTT
T ss_pred CCCCCHHHHHHHHHCCCCC--CCEEEEECCCC--------CEEEECCCHHHHHHCCCCCCHHHHHHHHHHCCCHHHHHHH
T ss_conf 9998799999999579888--86089986864--------2576313024332100114799998877504502555543
Q ss_pred ----CC----------------------------------------------------CC--------CC----------
Q ss_conf ----59----------------------------------------------------99--------83----------
Q 000615 969 ----LS----------------------------------------------------SD--------VD---------- 974 (1389)
Q Consensus 969 ----~~----------------------------------------------------~~--------~~---------- 974 (1389)
.. .. .+
T Consensus 777 ~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~ 856 (986)
T 2iw3_A 777 ANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSK 856 (986)
T ss_dssp TSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEETTEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHH
T ss_pred HHHCCCHHHHHHHHCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHH
T ss_conf 32103435554420001123201234444555431222002100025543200000123432344321016777666766
Q ss_pred ----------------HHHHHHHHHHHHHHCCCCC-C-CCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCC
Q ss_conf ----------------9999999999999829955-4-333346998878899899999999999639997203079999
Q 000615 975 ----------------TKKRKMFVDEVMELVELKS-L-NDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSG 1036 (1389)
Q Consensus 975 ----------------~~~~~~~v~~vl~~l~L~~-~-~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsG 1036 (1389)
.....+.++++++.++|.+ . .+..+ ..||||||||+.||++|+.+|++|+|||||+|
T Consensus 857 ~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~~~~~~~~-----~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~g 931 (986)
T 2iw3_A 857 MVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPEIVSHSRI-----RGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNY 931 (986)
T ss_dssp HHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHHHHHHSCG-----GGCCHHHHHHHHHHHHHTTCCSEEEEECGGGT
T ss_pred HHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCCCHHHCCCCC-----CCCCHHHHHHHHHHHHHHHCCCEEEEECCCCC
T ss_conf 5544324555430223234799999999976998054448980-----42399999999999999839999999798657
Q ss_pred CCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEECCCEEEEECC
Q ss_conf 9999999999999998849987999956851999986271889916959999358
Q 000615 1037 LDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLKRGGRVIYAGP 1091 (1389)
Q Consensus 1037 LD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~~gG~~~~~G~ 1091 (1389)
||..+...+++.++++ +.|||+++|++. .+...+|++++|. +|+++..|+
T Consensus 932 LD~~s~~~L~~~L~~~---g~tVIiISHD~e-~v~~l~DrVivL~-~G~Iv~~G~ 981 (986)
T 2iw3_A 932 LDRDSLGALSKALKEF---EGGVIIITHSAE-FTKNLTEEVWAVK-DGRMTPSGH 981 (986)
T ss_dssp CCHHHHHHHHHHHHSC---SSEEEEECSCHH-HHTTTCCEEECCB-TTBCCC---
T ss_pred CCHHHHHHHHHHHHHH---CCEEEEEECCHH-HHHHHCCEEEEEE-CCEEEEECC
T ss_conf 7999999999999974---997999979899-9998589999998-999998687
No 7
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=1.00 E-value=1 Score=441.27 Aligned_cols=203 Identities=23% Similarity=0.249 Sum_probs=160.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCCCHHHH
Q ss_conf 55102035884781999964689946789964529988963799999959038823120216684248978999999999
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYVTVYES 960 (1389)
Q Consensus 881 ~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~lTv~E~ 960 (1389)
..|+.+++.+++||++||+|+||||||||+++|+|...+ .+|+|.+++. .++|++|+.......||+|+
T Consensus 282 ~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p--~~G~i~~~~~---------~i~~~~q~~~~~~~~tv~~~ 350 (538)
T 3ozx_A 282 FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITA--DEGSVTPEKQ---------ILSYKPQRIFPNYDGTVQQY 350 (538)
T ss_dssp EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCC--SBCCEESSCC---------CEEEECSSCCCCCSSBHHHH
T ss_pred EEEEECCCEECCCCEEEEECCCCCCHHHHHHHHHCCCCC--CCCEEEECCE---------EEEEECHHCCCCCCCCHHHH
T ss_conf 899826646889989999999999899999999578889--9818999984---------56761400034547779999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHH
Q ss_conf 99888730599983999999999999982995543333469988788998999999999996399972030799999999
Q 000615 961 LLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDAR 1040 (1389)
Q Consensus 961 l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~ 1040 (1389)
+.+...... .. ....++++++.+++.+..+..++ .||||||||++||++|+.+|++|+|||||+|||..
T Consensus 351 l~~~~~~~~--~~----~~~~~~~~l~~~~l~~~~~~~~~-----~LSGGq~QRv~iAraL~~~p~lLlLDEPT~gLD~~ 419 (538)
T 3ozx_A 351 LENASKDAL--ST----SSWFFEEVTKRLNLHRLLESNVN-----DLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVE 419 (538)
T ss_dssp HHHHCSSTT--CT----TSHHHHHTTTTTTGGGCTTSBGG-----GCCHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHH
T ss_pred HHHHHHHCC--CH----HHHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHCCCCEEEEECCCCCCCHH
T ss_conf 987553112--11----69999999987599778628932-----27999999999999997089989996986579999
Q ss_pred HHHHHHHHHHHHHH-CCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 99999999999884-9987999956851999986271889916-959999358985314789998828
Q 000615 1041 AAAIVMRTVRNTVD-TGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHESHKLIEYFEAV 1106 (1389)
Q Consensus 1041 ~~~~i~~~l~~~~~-~g~tvi~t~Hqps~~~~~~fD~illl~~-gG~~~~~G~~~~~~~~~~~yf~~~ 1106 (1389)
++..+++.|+++++ .|.|||+++|+.. ++...+|++++|.. .|.....+++.........++...
T Consensus 420 ~~~~i~~~l~~l~~~~g~tvi~vsHdl~-~~~~~aDri~vl~~~~~~~~~~~~~~~~~~~~~~~~~~~ 486 (538)
T 3ozx_A 420 ERYIVAKAIKRVTRERKAVTFIIDHDLS-IHDYIADRIIVFKGEPEKAGLATSPVTLKTGMNEFLREL 486 (538)
T ss_dssp HHHHHHHHHHHHHHHTTCEEEEECSCHH-HHHHHCSEEEEEEEETTTEEEECCCEEHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEECCCCCHHHHHHHHHHHHHHC
T ss_conf 9999999999999738989999958899-999968999999698510116798477887888887416
No 8
>3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae}
Probab=1.00 E-value=1 Score=427.88 Aligned_cols=201 Identities=19% Similarity=0.209 Sum_probs=155.5
Q ss_pred EEEECCEEEEECC-----EEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCCCCCHHHHHHEEEEECCCCCCCCCC
Q ss_conf 5510203588478-----19999646899467899645299889637999999590388231202166842489789999
Q 000615 881 QLLHSVSGVFRPG-----VLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGYPKNQETFARVSGYCEQNDIHSPYV 955 (1389)
Q Consensus 881 ~iL~~vs~~i~~G-----~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~~~~~~~~~~~~gyv~Q~d~~~~~l 955 (1389)
..++++++.+++| |++||+|+||||||||+++|+|...+. +|.. .. ...++|++|+.......
T Consensus 361 ~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~--~G~~------~~----~~~i~~~~q~~~~~~~~ 428 (608)
T 3j16_B 361 KTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPD--EGQD------IP----KLNVSMKPQKIAPKFPG 428 (608)
T ss_dssp EECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCS--BCCC------CC----SCCEEEECSSCCCCCCS
T ss_pred CCCCCEEEEEECCCCCCCEEEEEECCCCCCHHHHHHHHHCCCCCC--CCCC------CC----CCCEEEECCCCCCCCCC
T ss_conf 446865899706851465189998888986999999996578787--8858------66----77379860544445786
Q ss_pred CHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCC
Q ss_conf 99999998887305999839999999999999829955433334699887889989999999999963999720307999
Q 000615 956 TVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTS 1035 (1389)
Q Consensus 956 Tv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTs 1035 (1389)
||+|.+... ++... .. ...++++++.++|.+..+..++ .||||||||+.||++|+.+|++|+|||||+
T Consensus 429 tv~e~~~~~--~~~~~-~~----~~~~~~~l~~l~l~~~~~~~~~-----~LSGGqkQRv~iAraL~~~p~lLlLDEPT~ 496 (608)
T 3j16_B 429 TVRQLFFKK--IRGQF-LN----PQFQTDVVKPLRIDDIIDQEVQ-----HLSGGELQRVAIVLALGIPADIYLIDEPSA 496 (608)
T ss_dssp BHHHHHHHH--CSSTT-TS----HHHHHHTHHHHTSTTTSSSBSS-----SCCHHHHHHHHHHHHTTSCCSEEEECCTTT
T ss_pred CHHHHHHHH--HHCCC-CC----HHHHHHHHHHCCCHHHHCCCHH-----HCCHHHHHHHHHHHHHHHCCCEEEEECCCC
T ss_conf 699999877--53032-46----8999999987498346519932-----389999999999999973899999989888
Q ss_pred CCCHHHHHHHHHHHHHHH-HCCCEEEEEECCCCHHHHHHHCEEEEEEC-CCEEEEECCCCCCHHHHHHHHHHC
Q ss_conf 999999999999999988-49987999956851999986271889916-959999358985314789998828
Q 000615 1036 GLDARAAAIVMRTVRNTV-DTGRTVVCTIHQPSIDIFEAFDELLLLKR-GGRVIYAGPLGHESHKLIEYFEAV 1106 (1389)
Q Consensus 1036 GLD~~~~~~i~~~l~~~~-~~g~tvi~t~Hqps~~~~~~fD~illl~~-gG~~~~~G~~~~~~~~~~~yf~~~ 1106 (1389)
|||+.++..++++|++++ +.|.|||+++|+.. ++...+|++++|.. .|+++..|++.........+...+
T Consensus 497 gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~-~~~~~aDrvivl~~~~g~~~~~g~p~~~~~~~~~~~~~~ 568 (608)
T 3j16_B 497 YLDSEQRIICSKVIRRFILHNKKTAFIVEHDFI-MATYLADKVIVFEGIPSKNAHARAPESLLTGCNRFLKNL 568 (608)
T ss_dssp TCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHH-HHHHHCSEEEECEEETTTEEECCCCEEHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHCCCEEEEEECCHH-HHHHHCCEEEEEECCCCEEEECCCHHHHHHHHHHHHHHC
T ss_conf 899999999999999999757998999968899-999868999999589873774298699863046899754
No 9
>3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima}
Probab=1.00 E-value=1 Score=348.69 Aligned_cols=198 Identities=28% Similarity=0.429 Sum_probs=144.0
Q ss_pred EEEECCEEEEECCEEEEEECCCCCCHHHHH---------HHHCCCC--CCC--EEE------EEEEECCCCCCH------
Q ss_conf 551020358847819999646899467899---------6452998--896--379------999995903882------
Q 000615 881 QLLHSVSGVFRPGVLTALMGVSGAGKTTLM---------DVLAGRK--TGG--YIE------GDIKISGYPKNQ------ 935 (1389)
Q Consensus 881 ~iL~~vs~~i~~G~~~al~G~sGaGKTTLl---------~~Lag~~--~~g--~~~------G~i~i~g~~~~~------ 935 (1389)
..|+|||+.+++|++++|+|+||||||||+ +.+.+.. .++ .+. +.+.+++.+...
T Consensus 598 ~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~i~idq~pig~~~rs~~ 677 (916)
T 3pih_A 598 NNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKMIAIDQSPIGRTPRSNP 677 (916)
T ss_dssp TTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEEEEECSCCCCCCTTCCH
T ss_pred CCCCCCCEEECCCCEEEEECCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCEEEECCCCCCCCCCCCC
T ss_conf 43365312871895999992588881545777777899987403445666533335510114257631565566555564
Q ss_pred HH-----------H---------------------------HHEEEEECCCCCCCC------------------------
Q ss_conf 31-----------2---------------------------021668424897899------------------------
Q 000615 936 ET-----------F---------------------------ARVSGYCEQNDIHSP------------------------ 953 (1389)
Q Consensus 936 ~~-----------~---------------------------~~~~gyv~Q~d~~~~------------------------ 953 (1389)
.+ + .+..|++.++..+.|
T Consensus 678 at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~flp~~~v~c~~c~g~r~~~e~l~i~~~ 757 (916)
T 3pih_A 678 ATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEMLFLPDVYVECDVCKGKRYNRETLEITYK 757 (916)
T ss_dssp HHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCTTSCCEEEECTTTTTSCBCTTGGGCCBT
T ss_pred CCHHHHHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCCEEECCCCCCCCCCHHHHHHHHC
T ss_conf 30223678899986126687750455543111146664432367634877410167615632201464356665543015
Q ss_pred --------CCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCC
Q ss_conf --------999999999888730599983999999999999982995543333469988788998999999999996399
Q 000615 954 --------YVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELKSLNDSMVGLPGVSGLSTEQRKRLTIAVELVANP 1025 (1389)
Q Consensus 954 --------~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~~~~~~~vg~~~~~~LSgGqrkrl~Ia~~L~~~p 1025 (1389)
.+||.|++.|... .+ ....+.++|+.++|.... .+.+ ...||||||||+.||++|+.+|
T Consensus 758 g~~i~~vl~~tv~eal~f~~~------~~---~~~~~~~~L~~vGL~~~~---lgq~-~~~LSGGErQRV~LAraL~~~p 824 (916)
T 3pih_A 758 GKNISDILDMTVDEALEFFKN------IP---SIKRTLQVLHDVGLGYVK---LGQP-ATTLSGGEAQRIKLASELRKRD 824 (916)
T ss_dssp TBCHHHHHSSBHHHHHHHTTT------CH---HHHHHHHHHHHTTGGGSB---TTCC-STTCCHHHHHHHHHHHHHTSCC
T ss_pred CCCHHHHHHCCHHHHHHHHHC------CH---HHHHHHHHHHHCCCCHHH---CCCC-CCCCCHHHHHHHHHHHHHHHCC
T ss_conf 677787740779999998751------50---589999999981886333---1687-1579999999999999996287
Q ss_pred ---CCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE-----CCCEEEEECCCC
Q ss_conf ---97203079999999999999999999884998799995685199998627188991-----695999935898
Q 000615 1026 ---SIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK-----RGGRVIYAGPLG 1093 (1389)
Q Consensus 1026 ---~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~-----~gG~~~~~G~~~ 1093 (1389)
++|+|||||+|||+.+...+++.|+++++.|.|||+++|++ +....+|+++.|. ++|++++.|++.
T Consensus 825 ~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL--~~i~~ADrIivLgp~gg~~~G~Iv~~Gtpe 898 (916)
T 3pih_A 825 TGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNL--DVIKNADHIIDLGPEGGKEGGYIVATGTPE 898 (916)
T ss_dssp CSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCH--HHHTTCSEEEEEESSSGGGCCEEEEEESHH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCH--HHHHHCCEEEEECCCCCCCCCEEEEECCHH
T ss_conf 88978999798889999999999999999996699899993799--999729999996687777897899976999
No 10
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=1.00 E-value=1 Score=348.57 Aligned_cols=215 Identities=25% Similarity=0.366 Sum_probs=178.4
Q ss_pred CCEEEEECCCEEEECCCCCCCCCCCCCCCEEEECCEEEEECCEEEEEECCCCCCHHHHHHHHCCCCCCCEEEEEEEECCC
Q ss_conf 82678833401353352211246565651551020358847819999646899467899645299889637999999590
Q 000615 852 PLSLTFDNMSYFVDMPAEMKTEGVGEDRLQLLHSVSGVFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIKISGY 931 (1389)
Q Consensus 852 ~~~l~~~~l~y~~~~~~~~~~~~~~~~~~~iL~~vs~~i~~G~~~al~G~sGaGKTTLl~~Lag~~~~g~~~G~i~i~g~ 931 (1389)
...++|+|+++.++.. ....+|+|+|+.++||+++||+|+||||||||+++|.|... +.+|.|.+||.
T Consensus 413 ~g~I~~~nvsF~Y~~~----------~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~--~~~G~I~idG~ 480 (1321)
T 4f4c_A 413 KGDITVENVHFTYPSR----------PDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYD--VLKGKITIDGV 480 (1321)
T ss_dssp CCCEEEEEEEECCSSS----------TTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSC--CSEEEEEETTE
T ss_pred CCCEEEEEEEEECCCC----------CCCCEEECEEEEECCCCEEEEEECCCCCHHHHHHHHCCCCC--CCCCCCCCCCC
T ss_conf 8767999855407999----------98743333188622882789980589857788887545651--64486157996
Q ss_pred CCC---HHHHHHEEEEECCCCCCCCCCCHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCC-------CCCCCCCCC
Q ss_conf 388---2312021668424897899999999999888730599983999999999999982995-------543333469
Q 000615 932 PKN---QETFARVSGYCEQNDIHSPYVTVYESLLYSAWLRLSSDVDTKKRKMFVDEVMELVELK-------SLNDSMVGL 1001 (1389)
Q Consensus 932 ~~~---~~~~~~~~gyv~Q~d~~~~~lTv~E~l~f~a~lr~~~~~~~~~~~~~v~~vl~~l~L~-------~~~~~~vg~ 1001 (1389)
+.. ...+++.++||+|++.++ +-|++||+.|.. .+.+.+ .+.++++..++. +-.|+.+|.
T Consensus 481 ~i~~~~~~~lr~~i~~v~Q~~~Lf-~~TI~eNI~~g~-----~~~~~~----~v~~a~~~a~l~~~i~~lp~G~~T~vGe 550 (1321)
T 4f4c_A 481 DVRDINLEFLRKNVAVVSQEPALF-NCTIEENISLGK-----EGITRE----EMVAACKMANAEKFIKTLPNGYNTLVGD 550 (1321)
T ss_dssp ETTTSCHHHHHHHEEEECSSCCCC-SEEHHHHHHTTC-----TTCCHH----HHHHHHHHTTCHHHHHHSTTTTSSEESS
T ss_pred CCHHCCHHHHHHCCCCCCCCCEEE-CCCHHHHHHHHC-----CCCHHH----HHHHHHHHCCCHHHHHCCCCCCCCEECC
T ss_conf 501125999850466658753320-786167886415-----522099----9999998756546887088888607558
Q ss_pred CCCCCCCHHHHHHHHHHHHHHHCCCCCEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCHHHHHHHCEEEEEE
Q ss_conf 98878899899999999999639997203079999999999999999999884998799995685199998627188991
Q 000615 1002 PGVSGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLLK 1081 (1389)
Q Consensus 1002 ~~~~~LSgGqrkrl~Ia~~L~~~p~illLDEPTsGLD~~~~~~i~~~l~~~~~~g~tvi~t~Hqps~~~~~~fD~illl~ 1081 (1389)
.|. .||||||||++|||+++++|+|++||||||+||+.++..+++.++++. +|+|+|+++|+++ ....+|++++|+
T Consensus 551 ~G~-~LSGGQkQRiaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~-~~~T~iiiaHrls--~i~~aD~Iivl~ 626 (1321)
T 4f4c_A 551 RGT-QLSGGQKQRIAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAA-KGRTTIIIAHRLS--TIRNADLIISCK 626 (1321)
T ss_dssp SSC-CCCHHHHHHHHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHH-TTSEEEEECSCTT--TTTTCSEEEEEE
T ss_pred CCC-CCCHHHHHHHHHHHHHCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHH-CCCEEEEECCCHH--HHHHCCEEEEEE
T ss_conf 988-777778799999998725999899845544688789999999999984-7988999736387--898689899963
Q ss_pred CCCEEEEECCCC
Q ss_conf 695999935898
Q 000615 1082 RGGRVIYAGPLG 1093 (1389)
Q Consensus 1082 ~gG~~~~~G~~~ 1093 (1389)
+|+++..|+..
T Consensus 627 -~G~ive~Gth~ 637 (1321)
T 4f4c_A 627 -NGQVVEVGDHR 637 (1321)
T ss_dssp -TTEEEEEECHH
T ss_pred -CCEEECCCCHH
T ss_conf -99651368999
Done!