Query 000617
Match_columns 1388
No_of_seqs 550 out of 3008
Neff 7.7
Searched_HMMs 46136
Date Mon Apr 1 20:51:31 2013
Command hhsearch -i /work/01045/syshi/lefta3m/000617.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/leftcdd/000617hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5022 Myosin heavy chain [Cy 100.0 4E-204 8E-209 1878.9 91.1 1230 1-1330 146-1403(1463)
2 PTZ00014 myosin-A; Provisional 100.0 2E-167 4E-172 1571.0 62.7 631 1-635 177-818 (821)
3 KOG0160 Myosin class V heavy c 100.0 9E-161 2E-165 1468.3 59.2 670 1-682 88-758 (862)
4 cd01384 MYSc_type_XI Myosin mo 100.0 1E-159 3E-164 1484.2 57.0 593 1-593 82-674 (674)
5 KOG0164 Myosin class I heavy c 100.0 4E-155 8E-160 1332.0 54.2 648 1-664 88-756 (1001)
6 cd01380 MYSc_type_V Myosin mot 100.0 2E-155 5E-160 1455.7 54.7 585 1-589 80-691 (691)
7 cd01377 MYSc_type_II Myosin mo 100.0 7E-155 2E-159 1451.3 56.2 585 1-589 85-693 (693)
8 cd01381 MYSc_type_VII Myosin m 100.0 6E-155 1E-159 1445.1 54.2 582 1-589 80-671 (671)
9 cd01383 MYSc_type_VIII Myosin 100.0 6E-154 1E-158 1434.3 53.2 577 1-589 86-677 (677)
10 cd01378 MYSc_type_I Myosin mot 100.0 2E-153 4E-158 1434.4 54.6 583 1-589 80-674 (674)
11 cd01385 MYSc_type_IX Myosin mo 100.0 1E-152 3E-157 1428.0 56.8 583 1-590 88-689 (692)
12 cd01387 MYSc_type_XV Myosin mo 100.0 3E-152 7E-157 1421.6 54.9 581 1-589 81-677 (677)
13 cd01382 MYSc_type_VI Myosin mo 100.0 1E-151 3E-156 1424.5 56.0 581 1-588 85-715 (717)
14 cd01379 MYSc_type_III Myosin m 100.0 8E-151 2E-155 1401.5 54.2 560 1-589 80-653 (653)
15 smart00242 MYSc Myosin. Large 100.0 7E-150 1E-154 1410.8 55.9 586 1-590 86-677 (677)
16 KOG0162 Myosin class I heavy c 100.0 7E-150 1E-154 1286.9 46.8 613 1-623 98-725 (1106)
17 KOG0161 Myosin class II heavy 100.0 6E-147 1E-151 1436.7 72.6 833 1-909 162-1021(1930)
18 cd00124 MYSc Myosin motor doma 100.0 9E-148 2E-152 1396.6 55.5 583 1-589 80-679 (679)
19 cd01386 MYSc_type_XVIII Myosin 100.0 3E-146 7E-151 1375.5 53.2 582 1-589 80-767 (767)
20 KOG0163 Myosin class VI heavy 100.0 1E-142 3E-147 1226.4 72.9 650 1-666 138-837 (1259)
21 PF00063 Myosin_head: Myosin h 100.0 3E-140 6E-145 1347.3 47.0 575 1-578 79-689 (689)
22 KOG4229 Myosin VII, myosin IXB 100.0 6.7E-93 1.4E-97 892.1 24.9 670 1-684 142-1008(1062)
23 KOG1892 Actin filament-binding 100.0 4.9E-30 1.1E-34 303.1 21.1 263 1016-1355 595-865 (1629)
24 PF01843 DIL: DIL domain; Int 99.9 5.9E-28 1.3E-32 235.1 6.6 105 1206-1313 1-105 (105)
25 KOG0161 Myosin class II heavy 99.0 1.5E-06 3.4E-11 118.0 40.9 729 92-907 217-991 (1930)
26 COG5022 Myosin heavy chain [Cy 98.5 9E-05 1.9E-09 96.8 31.3 78 643-720 746-823 (1463)
27 KOG0160 Myosin class V heavy c 98.5 9.6E-07 2.1E-11 111.6 13.1 86 642-730 673-758 (862)
28 KOG0520 Uncharacterized conser 98.4 5.3E-07 1.2E-11 113.7 9.1 121 591-736 807-937 (975)
29 KOG0520 Uncharacterized conser 98.1 7.7E-06 1.7E-10 103.6 9.6 136 594-729 756-905 (975)
30 cd01363 Motor_domain Myosin an 97.8 9.5E-06 2.1E-10 87.9 3.0 77 4-88 21-98 (186)
31 KOG0971 Microtubule-associated 97.8 0.019 4.1E-07 71.6 30.8 29 1176-1204 897-925 (1243)
32 KOG0971 Microtubule-associated 97.6 0.031 6.7E-07 69.8 27.8 73 835-907 400-475 (1243)
33 KOG1029 Endocytic adaptor prot 97.4 0.024 5.2E-07 69.6 23.8 10 1300-1309 1053-1062(1118)
34 KOG0996 Structural maintenance 97.4 0.77 1.7E-05 60.1 37.0 45 482-527 107-156 (1293)
35 PRK11637 AmiB activator; Provi 97.4 0.035 7.6E-07 68.4 25.4 75 833-907 172-253 (428)
36 TIGR02169 SMC_prok_A chromosom 97.3 1.8 3.8E-05 60.8 45.9 9 291-299 5-13 (1164)
37 KOG0250 DNA repair protein RAD 97.3 0.44 9.6E-06 62.1 34.9 76 833-908 389-464 (1074)
38 KOG1029 Endocytic adaptor prot 97.2 0.046 1E-06 67.2 22.5 79 829-907 428-513 (1118)
39 PRK11637 AmiB activator; Provi 97.2 0.093 2E-06 64.7 26.2 24 876-899 229-252 (428)
40 KOG0164 Myosin class I heavy c 97.1 0.0048 1E-07 75.0 13.7 21 211-231 248-268 (1001)
41 KOG0250 DNA repair protein RAD 97.1 0.096 2.1E-06 68.0 25.7 24 496-519 125-149 (1074)
42 TIGR02169 SMC_prok_A chromosom 97.1 2.9 6.3E-05 58.6 45.1 7 1039-1045 616-622 (1164)
43 KOG2128 Ras GTPase-activating 97.1 0.013 2.9E-07 76.9 17.6 118 620-737 510-646 (1401)
44 KOG0933 Structural maintenance 97.0 0.53 1.1E-05 60.5 30.2 46 11-66 29-76 (1174)
45 PF09726 Macoilin: Transmembra 97.0 0.11 2.4E-06 66.9 25.1 34 832-865 546-579 (697)
46 PF00612 IQ: IQ calmodulin-bin 97.0 0.0008 1.7E-08 45.2 3.1 19 643-661 2-20 (21)
47 KOG1853 LIS1-interacting prote 97.0 0.13 2.8E-06 55.6 21.1 78 832-909 99-179 (333)
48 PRK04863 mukB cell division pr 96.9 1.1 2.4E-05 62.7 35.1 32 736-767 303-334 (1486)
49 KOG0933 Structural maintenance 96.9 0.17 3.7E-06 64.7 24.6 33 830-862 786-818 (1174)
50 PF12718 Tropomyosin_1: Tropom 96.9 0.16 3.5E-06 52.3 20.7 132 742-905 9-140 (143)
51 PF08317 Spc7: Spc7 kinetochor 96.9 0.19 4E-06 59.5 24.2 81 829-909 207-291 (325)
52 KOG2128 Ras GTPase-activating 96.9 0.013 2.8E-07 77.1 15.1 115 600-714 513-646 (1401)
53 PF09726 Macoilin: Transmembra 96.8 0.14 3E-06 66.0 24.1 59 846-904 595-653 (697)
54 PF12128 DUF3584: Protein of u 96.8 4.7 0.0001 56.4 42.1 33 599-631 227-259 (1201)
55 COG1196 Smc Chromosome segrega 96.8 4.7 0.0001 56.3 44.1 11 1238-1248 947-957 (1163)
56 TIGR02168 SMC_prok_B chromosom 96.8 1.3 2.9E-05 62.0 35.5 8 557-564 125-132 (1179)
57 COG1579 Zn-ribbon protein, pos 96.7 0.44 9.5E-06 53.0 23.6 52 830-881 88-139 (239)
58 KOG4643 Uncharacterized coiled 96.7 2.3 5E-05 54.9 32.2 56 740-799 170-225 (1195)
59 PRK09039 hypothetical protein; 96.7 0.21 4.6E-06 59.3 22.5 28 741-768 47-74 (343)
60 PF00612 IQ: IQ calmodulin-bin 96.7 0.0021 4.5E-08 43.2 3.2 19 595-613 2-20 (21)
61 KOG0163 Myosin class VI heavy 96.6 1.5 3.2E-05 54.6 28.3 57 648-715 779-838 (1259)
62 PF12128 DUF3584: Protein of u 96.5 7 0.00015 54.7 39.7 27 1303-1330 1054-1081(1201)
63 COG1196 Smc Chromosome segrega 96.5 7.2 0.00016 54.5 43.2 42 864-905 451-492 (1163)
64 PF07888 CALCOCO1: Calcium bin 96.5 0.46 1E-05 58.5 23.9 79 830-908 370-452 (546)
65 PHA02562 46 endonuclease subun 96.3 0.66 1.4E-05 59.4 25.7 24 832-855 300-323 (562)
66 KOG0995 Centromere-associated 96.2 2.9 6.3E-05 51.3 28.0 23 706-728 265-287 (581)
67 COG4372 Uncharacterized protei 96.2 2 4.4E-05 49.6 25.1 9 1150-1158 471-479 (499)
68 smart00787 Spc7 Spc7 kinetocho 96.2 0.66 1.4E-05 54.2 22.2 80 830-909 203-286 (312)
69 PF07888 CALCOCO1: Calcium bin 96.2 1 2.2E-05 55.7 24.4 22 744-765 161-182 (546)
70 KOG4229 Myosin VII, myosin IXB 96.2 0.0028 6E-08 83.3 2.9 263 470-734 651-1010(1062)
71 PF14662 CCDC155: Coiled-coil 96.2 1.9 4.1E-05 45.9 23.0 80 831-910 102-188 (193)
72 PF00261 Tropomyosin: Tropomyo 96.2 1.4 2.9E-05 49.8 24.1 26 831-856 134-159 (237)
73 PRK02224 chromosome segregatio 96.1 1.8 3.8E-05 58.8 29.5 8 575-582 133-140 (880)
74 KOG0999 Microtubule-associated 96.1 0.63 1.4E-05 55.8 21.0 30 779-808 43-72 (772)
75 COG3883 Uncharacterized protei 96.1 1.4 3.1E-05 49.5 23.0 25 779-803 73-97 (265)
76 PRK02224 chromosome segregatio 96.0 7.4 0.00016 52.9 34.9 11 374-384 34-44 (880)
77 PF14662 CCDC155: Coiled-coil 96.0 0.29 6.3E-06 51.8 16.2 74 836-909 65-138 (193)
78 PRK03918 chromosome segregatio 96.0 1.1 2.4E-05 60.8 26.7 19 9-27 25-43 (880)
79 PHA02562 46 endonuclease subun 96.0 1.9 4.1E-05 55.3 27.6 16 832-847 307-322 (562)
80 PF00261 Tropomyosin: Tropomyo 96.0 1.1 2.4E-05 50.5 22.3 29 874-902 198-226 (237)
81 PF05667 DUF812: Protein of un 96.0 0.45 9.7E-06 60.3 20.8 57 853-909 427-483 (594)
82 PF00038 Filament: Intermediat 96.0 3.1 6.7E-05 49.0 27.2 12 896-907 264-275 (312)
83 PTZ00014 myosin-A; Provisional 95.9 0.015 3.2E-07 76.1 7.6 41 643-683 778-818 (821)
84 KOG4643 Uncharacterized coiled 95.9 1.6 3.5E-05 56.2 24.5 23 746-768 407-429 (1195)
85 COG1579 Zn-ribbon protein, pos 95.9 1.6 3.6E-05 48.5 22.1 50 830-879 95-144 (239)
86 KOG0980 Actin-binding protein 95.8 1.7 3.7E-05 55.4 24.1 36 1265-1303 850-886 (980)
87 PRK03918 chromosome segregatio 95.7 2.8 6E-05 56.9 29.0 14 1316-1329 824-837 (880)
88 COG5185 HEC1 Protein involved 95.7 1.4 3E-05 52.1 21.7 58 706-763 301-360 (622)
89 KOG1853 LIS1-interacting prote 95.7 1.1 2.5E-05 48.7 19.4 22 886-907 163-184 (333)
90 PF10473 CENP-F_leu_zip: Leuci 95.7 0.95 2.1E-05 46.2 18.1 14 749-762 19-32 (140)
91 PRK04863 mukB cell division pr 95.7 17 0.00036 51.5 35.8 16 1222-1237 963-978 (1486)
92 COG4942 Membrane-bound metallo 95.7 6.2 0.00013 47.4 27.4 23 885-907 222-244 (420)
93 KOG0018 Structural maintenance 95.7 8.9 0.00019 50.4 30.2 41 642-682 210-250 (1141)
94 smart00015 IQ Short calmodulin 95.7 0.01 2.2E-07 42.2 2.8 21 642-662 3-23 (26)
95 PF07926 TPR_MLP1_2: TPR/MLP1/ 95.6 2.1 4.6E-05 43.7 20.4 34 877-910 95-128 (132)
96 PF06785 UPF0242: Uncharacteri 95.6 4.4 9.5E-05 46.2 23.9 28 882-909 196-223 (401)
97 PF05667 DUF812: Protein of un 95.5 2.6 5.7E-05 53.5 25.1 72 838-909 447-527 (594)
98 PF15070 GOLGA2L5: Putative go 95.5 1.7 3.7E-05 55.5 23.5 12 1343-1354 594-605 (617)
99 TIGR00606 rad50 rad50. This fa 95.5 1.2 2.5E-05 63.0 24.4 21 8-28 29-49 (1311)
100 KOG0976 Rho/Rac1-interacting s 95.5 9.2 0.0002 48.3 28.0 221 676-908 57-305 (1265)
101 KOG0994 Extracellular matrix g 95.5 13 0.00029 48.8 37.4 21 171-191 744-764 (1758)
102 PF04849 HAP1_N: HAP1 N-termin 95.4 1.6 3.6E-05 50.0 20.6 61 830-890 233-293 (306)
103 PRK01156 chromosome segregatio 95.4 1.5 3.3E-05 59.5 24.6 23 1181-1203 732-754 (895)
104 TIGR02168 SMC_prok_B chromosom 95.4 20 0.00042 50.4 48.1 9 531-539 124-132 (1179)
105 PRK09039 hypothetical protein; 95.4 0.35 7.6E-06 57.5 16.1 139 745-897 44-182 (343)
106 TIGR00606 rad50 rad50. This fa 95.4 4.6 9.9E-05 57.1 29.7 23 1019-1041 1142-1164(1311)
107 PF08317 Spc7: Spc7 kinetochor 95.3 1.5 3.3E-05 51.9 21.1 10 529-538 14-23 (325)
108 PF09789 DUF2353: Uncharacteri 95.2 6.4 0.00014 45.8 24.8 137 773-909 73-218 (319)
109 smart00015 IQ Short calmodulin 95.2 0.018 3.9E-07 40.9 2.8 20 594-613 3-22 (26)
110 TIGR03185 DNA_S_dndD DNA sulfu 95.1 4.8 0.0001 52.6 26.5 44 864-907 426-469 (650)
111 KOG0995 Centromere-associated 95.0 2.8 6E-05 51.5 21.6 19 739-757 234-252 (581)
112 KOG0977 Nuclear envelope prote 95.0 7.9 0.00017 48.1 25.8 25 600-624 47-71 (546)
113 COG4942 Membrane-bound metallo 94.9 12 0.00025 45.1 29.0 38 870-907 214-251 (420)
114 COG4372 Uncharacterized protei 94.8 10 0.00023 44.1 27.6 21 872-892 258-278 (499)
115 KOG4674 Uncharacterized conser 94.8 29 0.00063 49.0 35.7 113 750-862 769-882 (1822)
116 KOG0963 Transcription factor/C 94.8 15 0.00034 45.7 27.3 39 871-909 315-359 (629)
117 KOG0980 Actin-binding protein 94.7 19 0.0004 46.6 31.2 12 1291-1302 933-944 (980)
118 PF04091 Sec15: Exocyst comple 94.6 0.24 5.2E-06 58.1 11.7 132 1176-1308 177-311 (311)
119 KOG0996 Structural maintenance 94.6 24 0.00051 47.1 42.7 46 1262-1310 1170-1218(1293)
120 PF00038 Filament: Intermediat 94.5 13 0.00028 43.8 34.5 31 877-907 259-289 (312)
121 PF04849 HAP1_N: HAP1 N-termin 94.5 7.9 0.00017 44.7 22.6 77 833-909 208-284 (306)
122 KOG4673 Transcription factor T 94.4 18 0.0004 45.1 29.3 227 677-905 412-655 (961)
123 COG3883 Uncharacterized protei 94.4 8.5 0.00018 43.5 22.3 26 778-803 79-104 (265)
124 PF13207 AAA_17: AAA domain; P 94.4 0.034 7.4E-07 55.4 3.5 23 9-31 1-23 (121)
125 KOG4674 Uncharacterized conser 94.4 31 0.00068 48.7 31.6 59 706-764 660-720 (1822)
126 PRK01156 chromosome segregatio 94.4 4.9 0.00011 54.6 25.1 32 876-907 412-443 (895)
127 PF07111 HCR: Alpha helical co 94.3 9.6 0.00021 48.0 24.4 24 755-778 116-139 (739)
128 PF15070 GOLGA2L5: Putative go 94.2 23 0.0005 45.5 31.5 34 868-901 197-230 (617)
129 PF13851 GAS: Growth-arrest sp 94.2 4.9 0.00011 44.1 19.9 25 778-802 54-78 (201)
130 KOG0977 Nuclear envelope prote 94.2 6.3 0.00014 49.0 22.7 24 779-802 106-129 (546)
131 PF15619 Lebercilin: Ciliary p 94.2 10 0.00022 41.3 23.3 30 833-862 120-149 (194)
132 TIGR01843 type_I_hlyD type I s 94.2 5.1 0.00011 49.2 22.7 22 887-908 246-267 (423)
133 PF04156 IncA: IncA protein; 94.1 2.4 5.1E-05 46.2 17.4 30 873-902 158-187 (191)
134 PF08614 ATG16: Autophagy prot 94.1 0.37 8E-06 52.6 11.0 33 876-908 147-179 (194)
135 PF05010 TACC: Transforming ac 94.1 11 0.00025 41.3 24.8 36 872-907 160-195 (207)
136 PF05911 DUF869: Plant protein 94.0 7 0.00015 51.0 23.8 80 830-909 119-205 (769)
137 KOG0994 Extracellular matrix g 94.0 29 0.00063 45.9 36.2 35 873-907 1710-1744(1758)
138 KOG0946 ER-Golgi vesicle-tethe 94.0 7.5 0.00016 49.4 22.5 81 830-910 805-885 (970)
139 KOG0982 Centrosomal protein Nu 93.9 3.5 7.6E-05 48.5 18.5 28 882-909 362-389 (502)
140 PF15254 CCDC14: Coiled-coil d 93.9 13 0.00029 47.2 24.5 36 836-871 492-527 (861)
141 PF15619 Lebercilin: Ciliary p 93.8 12 0.00026 40.8 23.0 27 841-867 121-147 (194)
142 PF05483 SCP-1: Synaptonemal c 93.8 12 0.00027 46.8 23.7 46 867-912 581-626 (786)
143 PF10168 Nup88: Nuclear pore c 93.8 2.3 5.1E-05 55.4 19.0 30 879-908 684-713 (717)
144 KOG0612 Rho-associated, coiled 93.7 35 0.00077 45.8 28.8 71 836-906 621-693 (1317)
145 KOG4360 Uncharacterized coiled 93.7 4.7 0.0001 48.6 19.3 70 839-908 234-303 (596)
146 PTZ00121 MAEBL; Provisional 93.7 39 0.00083 46.1 34.7 18 401-418 775-792 (2084)
147 PF09730 BicD: Microtubule-ass 93.5 8 0.00017 49.9 22.5 61 847-907 123-183 (717)
148 smart00787 Spc7 Spc7 kinetocho 93.4 7.2 0.00016 45.7 20.6 15 887-901 271-285 (312)
149 PF13401 AAA_22: AAA domain; P 93.4 0.063 1.4E-06 54.2 3.3 29 5-33 2-30 (131)
150 PF15066 CAGE1: Cancer-associa 93.4 20 0.00044 43.0 23.6 15 256-270 50-64 (527)
151 KOG0964 Structural maintenance 93.4 12 0.00025 48.8 23.0 60 850-909 437-496 (1200)
152 PF10473 CENP-F_leu_zip: Leuci 93.3 11 0.00023 38.7 21.3 20 780-799 18-37 (140)
153 PF13238 AAA_18: AAA domain; P 93.3 0.067 1.5E-06 53.6 3.3 22 10-31 1-22 (129)
154 PF05701 WEMBL: Weak chloropla 93.2 13 0.00028 47.1 23.9 12 835-846 341-352 (522)
155 TIGR02680 conserved hypothetic 93.0 38 0.00083 48.0 30.4 27 8-34 25-51 (1353)
156 PF13191 AAA_16: AAA ATPase do 92.9 0.085 1.8E-06 56.6 3.6 33 2-34 19-51 (185)
157 PRK10884 SH3 domain-containing 92.9 1.3 2.8E-05 48.6 12.6 77 830-909 92-168 (206)
158 KOG0612 Rho-associated, coiled 92.8 47 0.001 44.7 31.1 35 402-436 213-252 (1317)
159 PF08614 ATG16: Autophagy prot 92.8 1.3 2.8E-05 48.4 12.5 69 829-897 114-182 (194)
160 KOG2991 Splicing regulator [RN 92.7 19 0.0004 39.8 24.9 73 830-909 235-307 (330)
161 KOG0946 ER-Golgi vesicle-tethe 92.7 11 0.00024 48.0 21.2 80 831-910 737-822 (970)
162 TIGR03007 pepcterm_ChnLen poly 92.7 11 0.00024 47.5 22.6 13 691-703 135-147 (498)
163 KOG0249 LAR-interacting protei 92.5 6.4 0.00014 49.2 18.7 23 1227-1257 756-779 (916)
164 PF07111 HCR: Alpha helical co 92.5 21 0.00045 45.2 23.2 19 890-908 245-263 (739)
165 KOG0979 Structural maintenance 92.5 18 0.00039 47.5 23.2 21 965-985 477-497 (1072)
166 cd02019 NK Nucleoside/nucleoti 92.4 0.12 2.6E-06 46.3 3.3 22 10-31 2-23 (69)
167 KOG4360 Uncharacterized coiled 92.3 11 0.00024 45.5 19.8 66 835-900 237-302 (596)
168 PRK05480 uridine/cytidine kina 92.3 0.14 2.9E-06 56.7 4.2 27 5-31 4-30 (209)
169 PRK04778 septation ring format 92.3 44 0.00095 43.0 31.0 32 877-908 307-338 (569)
170 PRK04778 septation ring format 92.1 45 0.00097 42.9 29.0 13 570-582 59-71 (569)
171 PF04111 APG6: Autophagy prote 92.1 0.87 1.9E-05 53.5 10.9 13 1179-1191 289-301 (314)
172 PRK00300 gmk guanylate kinase; 92.1 0.12 2.5E-06 56.9 3.4 26 6-31 4-29 (205)
173 KOG1937 Uncharacterized conser 92.1 33 0.00071 41.2 22.9 36 877-912 386-421 (521)
174 PRK05541 adenylylsulfate kinas 92.1 0.16 3.4E-06 54.5 4.3 33 1-33 1-33 (176)
175 PF09755 DUF2046: Uncharacteri 92.0 28 0.00061 40.3 30.6 14 896-909 263-276 (310)
176 TIGR02322 phosphon_PhnN phosph 92.0 0.12 2.6E-06 55.5 3.4 25 8-32 2-26 (179)
177 COG0444 DppD ABC-type dipeptid 91.9 0.11 2.4E-06 59.8 2.9 28 5-32 29-56 (316)
178 KOG0964 Structural maintenance 91.8 54 0.0012 43.1 27.5 22 747-768 300-321 (1200)
179 KOG1937 Uncharacterized conser 91.7 28 0.00061 41.7 21.9 39 871-909 387-425 (521)
180 KOG1103 Predicted coiled-coil 91.7 29 0.00063 39.8 24.5 51 851-908 244-294 (561)
181 PF10481 CENP-F_N: Cenp-F N-te 91.7 8 0.00017 43.2 16.5 69 842-910 64-132 (307)
182 COG0194 Gmk Guanylate kinase [ 91.6 0.13 2.8E-06 54.6 2.9 25 7-31 4-28 (191)
183 COG1340 Uncharacterized archae 91.6 30 0.00065 39.8 24.8 24 834-857 161-184 (294)
184 TIGR00150 HI0065_YjeE ATPase, 91.6 0.16 3.5E-06 51.6 3.5 26 6-31 21-46 (133)
185 TIGR01843 type_I_hlyD type I s 91.6 13 0.00029 45.5 21.2 27 877-903 243-269 (423)
186 PF09755 DUF2046: Uncharacteri 91.6 31 0.00068 39.9 27.5 14 895-908 230-243 (310)
187 KOG1003 Actin filament-coating 91.4 23 0.00049 38.0 22.0 11 884-894 169-179 (205)
188 cd00820 PEPCK_HprK Phosphoenol 91.3 0.17 3.8E-06 49.3 3.3 24 5-28 13-36 (107)
189 PF10174 Cast: RIM-binding pro 91.3 61 0.0013 42.7 34.5 77 831-907 465-541 (775)
190 PF15397 DUF4618: Domain of un 91.3 31 0.00066 39.1 25.5 36 876-911 189-224 (258)
191 PF10186 Atg14: UV radiation r 91.2 7.6 0.00017 45.3 17.7 77 831-907 70-146 (302)
192 cd01131 PilT Pilus retraction 91.2 0.16 3.4E-06 55.7 3.2 25 9-33 3-27 (198)
193 PF00004 AAA: ATPase family as 91.2 0.16 3.4E-06 51.1 3.0 23 10-32 1-23 (132)
194 KOG0979 Structural maintenance 91.0 29 0.00062 45.7 22.8 30 874-903 326-355 (1072)
195 COG0419 SbcC ATPase involved i 91.0 74 0.0016 43.5 28.8 39 1182-1220 740-778 (908)
196 PF07926 TPR_MLP1_2: TPR/MLP1/ 91.0 17 0.00037 37.1 17.4 61 833-896 68-128 (132)
197 PF04111 APG6: Autophagy prote 91.0 2.8 6.1E-05 49.3 13.4 70 838-907 50-119 (314)
198 PF06785 UPF0242: Uncharacteri 90.9 25 0.00055 40.3 19.7 18 992-1009 307-324 (401)
199 KOG2129 Uncharacterized conser 90.9 26 0.00057 41.3 20.2 11 691-701 85-95 (552)
200 PRK11281 hypothetical protein; 90.8 11 0.00025 51.4 20.4 6 901-906 299-304 (1113)
201 TIGR00235 udk uridine kinase. 90.8 0.23 5E-06 54.8 4.1 28 5-32 4-31 (207)
202 PRK10698 phage shock protein P 90.8 29 0.00063 38.7 20.5 76 830-905 98-184 (222)
203 PF10481 CENP-F_N: Cenp-F N-te 90.8 23 0.0005 39.7 18.9 80 830-909 94-191 (307)
204 PF09304 Cortex-I_coil: Cortex 90.8 7.8 0.00017 37.3 13.4 62 830-891 15-76 (107)
205 COG2433 Uncharacterized conser 90.7 2.7 5.9E-05 51.8 13.0 79 830-908 428-509 (652)
206 cd01918 HprK_C HprK/P, the bif 90.7 0.22 4.7E-06 51.6 3.4 24 7-30 14-37 (149)
207 PF00485 PRK: Phosphoribulokin 90.7 0.19 4.2E-06 54.8 3.3 26 10-35 2-27 (194)
208 cd02023 UMPK Uridine monophosp 90.5 0.2 4.3E-06 54.8 3.2 22 10-31 2-23 (198)
209 KOG4593 Mitotic checkpoint pro 90.5 60 0.0013 41.3 33.1 48 739-786 150-197 (716)
210 PF01583 APS_kinase: Adenylyls 90.5 0.31 6.7E-06 51.0 4.4 29 7-35 2-30 (156)
211 COG4026 Uncharacterized protei 90.5 3.1 6.8E-05 44.6 11.6 56 846-901 143-198 (290)
212 PF13851 GAS: Growth-arrest sp 90.4 22 0.00048 39.1 18.8 23 839-861 101-123 (201)
213 PTZ00301 uridine kinase; Provi 90.4 0.22 4.7E-06 55.1 3.3 23 10-32 6-28 (210)
214 PRK08233 hypothetical protein; 90.3 0.19 4E-06 54.0 2.7 25 8-32 4-28 (182)
215 KOG0982 Centrosomal protein Nu 90.3 43 0.00094 39.9 21.4 20 780-799 298-317 (502)
216 PF00769 ERM: Ezrin/radixin/mo 90.2 13 0.00027 42.3 17.3 36 868-903 77-112 (246)
217 PF10168 Nup88: Nuclear pore c 90.2 36 0.00078 44.7 23.5 21 479-499 421-441 (717)
218 cd00009 AAA The AAA+ (ATPases 90.0 0.29 6.3E-06 49.6 3.8 27 6-32 18-44 (151)
219 smart00382 AAA ATPases associa 90.0 0.22 4.8E-06 49.9 2.9 28 7-34 2-29 (148)
220 COG4026 Uncharacterized protei 90.0 3.1 6.7E-05 44.7 11.1 63 831-893 142-204 (290)
221 PF13870 DUF4201: Domain of un 90.0 31 0.00067 37.1 20.6 24 780-803 43-66 (177)
222 PF06160 EzrA: Septation ring 89.9 69 0.0015 41.1 33.1 30 879-908 305-334 (560)
223 KOG0978 E3 ubiquitin ligase in 89.8 72 0.0016 41.1 37.2 76 835-910 542-617 (698)
224 cd02028 UMPK_like Uridine mono 89.7 0.27 5.8E-06 53.0 3.4 24 10-33 2-25 (179)
225 PRK07261 topology modulation p 89.7 0.25 5.5E-06 52.7 3.1 23 9-31 2-24 (171)
226 cd00227 CPT Chloramphenicol (C 89.6 0.31 6.7E-06 52.2 3.7 25 7-31 2-26 (175)
227 TIGR02173 cyt_kin_arch cytidyl 89.5 0.25 5.5E-06 52.3 3.0 23 9-31 2-24 (171)
228 PRK08118 topology modulation p 89.4 0.31 6.6E-06 51.9 3.4 25 8-32 2-26 (167)
229 PRK06762 hypothetical protein; 89.4 0.29 6.3E-06 51.8 3.3 24 8-31 3-26 (166)
230 KOG4460 Nuclear pore complex, 89.3 40 0.00087 41.3 20.6 75 832-908 663-737 (741)
231 cd02020 CMPK Cytidine monophos 89.3 0.3 6.6E-06 50.2 3.2 22 10-31 2-23 (147)
232 PRK06696 uridine kinase; Valid 89.2 0.29 6.4E-06 54.7 3.3 29 5-33 20-48 (223)
233 PF00910 RNA_helicase: RNA hel 89.2 0.3 6.4E-06 47.9 3.0 25 10-34 1-25 (107)
234 PF08826 DMPK_coil: DMPK coile 89.2 5.5 0.00012 34.7 10.1 45 857-901 16-60 (61)
235 KOG4403 Cell surface glycoprot 89.2 6.7 0.00015 46.1 13.9 14 752-765 257-270 (575)
236 COG5185 HEC1 Protein involved 89.1 59 0.0013 39.2 24.9 27 834-860 333-359 (622)
237 PRK14737 gmk guanylate kinase; 89.1 0.28 6E-06 53.2 2.9 26 6-31 3-28 (186)
238 COG1660 Predicted P-loop-conta 89.1 0.26 5.6E-06 54.8 2.6 19 9-27 3-21 (286)
239 PRK09270 nucleoside triphospha 89.1 0.47 1E-05 53.3 4.8 32 5-36 31-62 (229)
240 cd02025 PanK Pantothenate kina 89.1 0.3 6.5E-06 54.5 3.2 24 10-33 2-25 (220)
241 PF10186 Atg14: UV radiation r 89.0 9.1 0.0002 44.6 15.8 79 830-908 62-140 (302)
242 PRK06217 hypothetical protein; 89.0 0.29 6.3E-06 52.9 3.0 22 10-31 4-25 (183)
243 cd02024 NRK1 Nicotinamide ribo 88.9 0.29 6.4E-06 53.0 2.9 22 10-31 2-23 (187)
244 cd01130 VirB11-like_ATPase Typ 88.9 0.31 6.7E-06 52.8 3.1 27 6-32 24-50 (186)
245 KOG2129 Uncharacterized conser 88.9 57 0.0012 38.6 22.9 35 748-782 166-200 (552)
246 cd01129 PulE-GspE PulE/GspE Th 88.8 0.3 6.6E-06 56.0 3.1 26 8-33 81-106 (264)
247 PRK10751 molybdopterin-guanine 88.8 0.48 1E-05 50.5 4.3 28 7-34 6-33 (173)
248 PRK10078 ribose 1,5-bisphospho 88.7 0.28 6E-06 53.2 2.6 25 7-31 2-26 (186)
249 cd00071 GMPK Guanosine monopho 88.7 0.28 6.1E-06 50.4 2.5 22 10-31 2-23 (137)
250 TIGR03007 pepcterm_ChnLen poly 88.7 27 0.00059 44.1 20.8 23 780-802 205-227 (498)
251 TIGR01005 eps_transp_fam exopo 88.7 39 0.00084 45.1 23.2 18 1287-1304 659-676 (754)
252 PF05729 NACHT: NACHT domain 88.6 0.38 8.1E-06 50.4 3.5 27 9-35 2-28 (166)
253 PRK00889 adenylylsulfate kinas 88.6 0.5 1.1E-05 50.5 4.5 30 5-34 2-31 (175)
254 PRK00131 aroK shikimate kinase 88.4 0.42 9.2E-06 50.7 3.8 26 6-31 3-28 (175)
255 PLN03188 kinesin-12 family pro 88.4 76 0.0017 43.3 24.3 21 4-24 163-183 (1320)
256 PRK06547 hypothetical protein; 88.3 0.42 9.2E-06 51.1 3.6 28 4-31 12-39 (172)
257 TIGR01313 therm_gnt_kin carboh 88.3 0.29 6.3E-06 51.6 2.4 22 10-31 1-22 (163)
258 TIGR02977 phageshock_pspA phag 88.3 48 0.001 37.0 21.1 75 829-903 97-182 (219)
259 PF03205 MobB: Molybdopterin g 88.1 0.47 1E-05 49.0 3.7 27 9-35 2-28 (140)
260 KOG4403 Cell surface glycoprot 88.1 65 0.0014 38.4 20.9 30 876-908 393-422 (575)
261 PF12846 AAA_10: AAA-like doma 88.0 0.43 9.3E-06 55.4 3.8 29 7-35 1-29 (304)
262 TIGR02782 TrbB_P P-type conjug 88.0 0.4 8.6E-06 56.1 3.4 27 7-33 132-158 (299)
263 PF09730 BicD: Microtubule-ass 87.9 49 0.0011 43.0 21.8 71 835-908 363-433 (717)
264 TIGR01420 pilT_fam pilus retra 87.9 0.38 8.2E-06 57.5 3.2 27 6-32 121-147 (343)
265 PF07724 AAA_2: AAA domain (Cd 87.9 0.49 1.1E-05 50.6 3.7 24 9-32 5-28 (171)
266 PF04437 RINT1_TIP1: RINT-1 / 87.9 16 0.00034 46.2 17.7 124 1176-1305 353-491 (494)
267 PRK11281 hypothetical protein; 87.9 36 0.00077 46.8 21.7 22 833-854 194-215 (1113)
268 PF01576 Myosin_tail_1: Myosin 87.9 0.16 3.4E-06 67.7 0.0 81 829-909 424-504 (859)
269 KOG1003 Actin filament-coating 87.7 43 0.00094 35.9 21.7 70 835-904 127-196 (205)
270 PF13870 DUF4201: Domain of un 87.7 38 0.00083 36.3 18.2 33 831-863 42-74 (177)
271 TIGR03263 guanyl_kin guanylate 87.7 0.33 7.2E-06 52.1 2.3 24 8-31 2-25 (180)
272 COG4608 AppF ABC-type oligopep 87.6 0.4 8.7E-06 54.1 3.0 30 6-35 38-67 (268)
273 PF13671 AAA_33: AAA domain; P 87.6 0.37 8E-06 49.4 2.6 23 10-32 2-24 (143)
274 PRK13833 conjugal transfer pro 87.6 0.44 9.6E-06 56.0 3.4 26 8-33 145-170 (323)
275 PF05483 SCP-1: Synaptonemal c 87.5 93 0.002 39.5 25.1 33 843-875 592-624 (786)
276 PRK14738 gmk guanylate kinase; 87.5 0.46 9.9E-06 52.5 3.4 26 5-30 11-36 (206)
277 TIGR02524 dot_icm_DotB Dot/Icm 87.5 0.42 9.2E-06 57.2 3.3 28 6-33 133-160 (358)
278 COG4172 ABC-type uncharacteriz 87.4 0.32 7E-06 57.1 2.1 29 7-35 36-64 (534)
279 PF13514 AAA_27: AAA domain 87.4 1.1E+02 0.0023 42.9 26.9 25 514-539 12-36 (1111)
280 COG0572 Udk Uridine kinase [Nu 87.4 0.46 9.9E-06 52.2 3.2 26 7-32 6-33 (218)
281 PF03668 ATP_bind_2: P-loop AT 87.3 0.41 9E-06 54.6 2.9 20 8-27 2-21 (284)
282 COG1125 OpuBA ABC-type proline 87.3 0.4 8.6E-06 53.3 2.7 26 8-33 28-53 (309)
283 cd02027 APSK Adenosine 5'-phos 87.3 0.5 1.1E-05 49.3 3.3 24 10-33 2-25 (149)
284 TIGR02525 plasmid_TraJ plasmid 87.0 0.47 1E-05 57.0 3.3 27 7-33 149-175 (372)
285 KOG0804 Cytoplasmic Zn-finger 87.0 32 0.00068 41.4 17.7 20 887-906 428-447 (493)
286 PF13245 AAA_19: Part of AAA d 87.0 0.73 1.6E-05 42.2 3.8 28 6-33 9-36 (76)
287 cd01120 RecA-like_NTPases RecA 86.9 0.56 1.2E-05 48.8 3.5 25 10-34 2-26 (165)
288 KOG1962 B-cell receptor-associ 86.9 5.1 0.00011 43.8 10.6 29 882-910 181-209 (216)
289 cd00464 SK Shikimate kinase (S 86.8 0.5 1.1E-05 49.1 3.1 23 9-31 1-23 (154)
290 PF02367 UPF0079: Uncharacteri 86.8 0.59 1.3E-05 46.9 3.4 26 6-31 14-39 (123)
291 KOG4809 Rab6 GTPase-interactin 86.8 31 0.00066 42.3 17.7 169 740-908 236-408 (654)
292 COG0563 Adk Adenylate kinase a 86.8 0.52 1.1E-05 50.7 3.2 22 10-31 3-24 (178)
293 PF10146 zf-C4H2: Zinc finger- 86.7 21 0.00045 40.0 15.7 39 831-869 39-77 (230)
294 PF10205 KLRAQ: Predicted coil 86.6 13 0.00027 35.8 11.8 69 836-904 3-71 (102)
295 COG1382 GimC Prefoldin, chaper 86.6 17 0.00037 36.0 13.1 39 869-907 73-111 (119)
296 COG1102 Cmk Cytidylate kinase 86.5 0.53 1.1E-05 48.8 2.9 23 10-32 3-25 (179)
297 TIGR03015 pepcterm_ATPase puta 86.5 0.52 1.1E-05 54.1 3.3 26 7-32 43-68 (269)
298 PRK05057 aroK shikimate kinase 86.5 0.63 1.4E-05 49.8 3.6 25 7-31 4-28 (172)
299 PF00437 T2SE: Type II/IV secr 86.3 0.52 1.1E-05 54.3 3.1 28 6-33 126-153 (270)
300 PF11559 ADIP: Afadin- and alp 86.3 13 0.00028 38.8 13.2 61 833-893 61-121 (151)
301 PF00769 ERM: Ezrin/radixin/mo 86.3 24 0.00052 40.1 16.2 21 877-897 93-113 (246)
302 PF11559 ADIP: Afadin- and alp 86.2 12 0.00027 38.9 13.1 34 836-869 57-90 (151)
303 PRK13851 type IV secretion sys 86.2 0.44 9.5E-06 56.6 2.4 26 7-32 162-187 (344)
304 PF03266 NTPase_1: NTPase; In 85.9 0.65 1.4E-05 49.5 3.4 24 10-33 2-25 (168)
305 PRK03846 adenylylsulfate kinas 85.9 0.85 1.8E-05 49.9 4.4 30 5-34 22-51 (198)
306 KOG0999 Microtubule-associated 85.9 98 0.0021 38.1 27.9 16 1187-1202 621-636 (772)
307 PF05911 DUF869: Plant protein 85.8 52 0.0011 43.3 20.7 27 881-907 734-760 (769)
308 PRK09825 idnK D-gluconate kina 85.7 0.7 1.5E-05 49.7 3.5 26 7-32 3-28 (176)
309 PF15254 CCDC14: Coiled-coil d 85.7 41 0.00089 43.1 18.7 36 872-907 514-549 (861)
310 PRK14527 adenylate kinase; Pro 85.7 0.8 1.7E-05 49.8 4.0 27 6-32 5-31 (191)
311 KOG4593 Mitotic checkpoint pro 85.7 1.2E+02 0.0025 38.9 30.5 21 689-709 85-105 (716)
312 KOG1899 LAR transmembrane tyro 85.7 30 0.00065 42.9 17.0 23 1232-1254 706-728 (861)
313 TIGR01360 aden_kin_iso1 adenyl 85.6 0.64 1.4E-05 50.1 3.3 23 9-31 5-27 (188)
314 PF12777 MT: Microtubule-bindi 85.6 29 0.00062 41.6 17.4 170 732-905 7-295 (344)
315 PF04665 Pox_A32: Poxvirus A32 85.5 0.62 1.4E-05 52.3 3.1 25 9-33 15-39 (241)
316 COG2884 FtsE Predicted ATPase 85.5 0.62 1.3E-05 49.6 2.9 24 8-31 29-52 (223)
317 PF14197 Cep57_CLD_2: Centroso 85.5 10 0.00022 34.0 10.1 60 836-895 3-62 (69)
318 COG1123 ATPase components of v 85.4 0.5 1.1E-05 58.5 2.5 29 6-34 34-62 (539)
319 cd02021 GntK Gluconate kinase 85.3 0.62 1.3E-05 48.3 2.8 22 10-31 2-23 (150)
320 PRK13900 type IV secretion sys 85.2 0.55 1.2E-05 55.7 2.6 26 7-32 160-185 (332)
321 TIGR03420 DnaA_homol_Hda DnaA 85.1 0.7 1.5E-05 51.5 3.4 29 5-33 36-64 (226)
322 cd02029 PRK_like Phosphoribulo 85.0 0.78 1.7E-05 52.1 3.6 24 10-33 2-25 (277)
323 PRK04040 adenylate kinase; Pro 84.8 0.73 1.6E-05 50.1 3.2 24 8-31 3-26 (188)
324 COG1124 DppF ABC-type dipeptid 84.7 0.67 1.5E-05 51.4 2.8 28 6-33 32-59 (252)
325 PF12325 TMF_TATA_bd: TATA ele 84.7 18 0.0004 36.1 12.5 14 781-794 32-45 (120)
326 PF01576 Myosin_tail_1: Myosin 84.6 0.29 6.3E-06 65.2 0.0 33 739-771 31-63 (859)
327 PRK07667 uridine kinase; Provi 84.6 0.84 1.8E-05 49.8 3.6 26 8-33 18-43 (193)
328 TIGR01005 eps_transp_fam exopo 84.6 1.6E+02 0.0034 39.4 30.2 11 555-565 86-96 (754)
329 PF03193 DUF258: Protein of un 84.5 0.88 1.9E-05 47.9 3.4 25 6-30 34-58 (161)
330 COG1340 Uncharacterized archae 84.5 85 0.0018 36.2 28.8 25 877-901 225-249 (294)
331 TIGR01000 bacteriocin_acc bact 84.4 67 0.0015 40.1 20.7 25 884-908 288-312 (457)
332 COG3074 Uncharacterized protei 84.4 19 0.00041 31.6 10.6 25 884-908 36-60 (79)
333 PRK04182 cytidylate kinase; Pr 84.3 0.73 1.6E-05 49.2 2.9 23 9-31 2-24 (180)
334 KOG0922 DEAH-box RNA helicase 84.2 0.86 1.9E-05 56.8 3.7 107 5-117 64-182 (674)
335 PRK10929 putative mechanosensi 84.2 1E+02 0.0023 42.4 23.2 23 833-855 175-197 (1109)
336 PF13166 AAA_13: AAA domain 84.2 1.3E+02 0.0029 39.7 24.6 41 871-911 415-455 (712)
337 PF09789 DUF2353: Uncharacteri 84.2 94 0.002 36.5 23.0 22 781-802 74-95 (319)
338 PRK08903 DnaA regulatory inact 84.1 1.1 2.3E-05 50.2 4.3 30 5-34 40-69 (227)
339 PF13555 AAA_29: P-loop contai 84.1 1 2.2E-05 39.4 3.1 22 9-30 25-46 (62)
340 PF10234 Cluap1: Clusterin-ass 84.1 33 0.00071 39.2 15.7 68 831-898 169-236 (267)
341 cd02034 CooC The accessory pro 84.0 1.1 2.3E-05 44.7 3.7 26 10-35 2-27 (116)
342 PF03962 Mnd1: Mnd1 family; I 84.0 9.9 0.00022 41.3 11.4 80 831-911 69-152 (188)
343 PF10146 zf-C4H2: Zinc finger- 83.9 43 0.00092 37.6 16.4 52 858-909 52-103 (230)
344 COG0529 CysC Adenylylsulfate k 83.9 1.2 2.7E-05 46.9 4.1 31 5-35 21-51 (197)
345 cd03115 SRP The signal recogni 83.8 1.1 2.3E-05 47.8 4.0 27 9-35 2-28 (173)
346 PF07475 Hpr_kinase_C: HPr Ser 83.8 0.9 1.9E-05 48.0 3.2 23 7-29 18-40 (171)
347 KOG0924 mRNA splicing factor A 83.7 1.2 2.7E-05 55.1 4.7 123 5-131 369-503 (1042)
348 PF09738 DUF2051: Double stran 83.7 65 0.0014 37.6 18.4 64 833-896 100-163 (302)
349 PRK10361 DNA recombination pro 83.6 1.3E+02 0.0027 37.5 29.1 16 1016-1031 277-292 (475)
350 PRK13894 conjugal transfer ATP 83.6 0.9 2E-05 53.5 3.5 28 6-33 147-174 (319)
351 TIGR00634 recN DNA repair prot 83.5 55 0.0012 42.0 19.8 29 881-909 347-375 (563)
352 PF07728 AAA_5: AAA domain (dy 83.5 0.97 2.1E-05 46.2 3.3 22 10-31 2-23 (139)
353 PF05010 TACC: Transforming ac 83.5 76 0.0017 35.0 23.3 25 779-803 76-100 (207)
354 KOG1103 Predicted coiled-coil 83.5 93 0.002 35.9 22.7 18 750-767 142-159 (561)
355 KOG0243 Kinesin-like protein [ 83.5 1.3E+02 0.0027 40.7 22.5 6 174-179 109-114 (1041)
356 PRK06761 hypothetical protein; 83.5 0.8 1.7E-05 52.7 2.9 26 8-33 4-29 (282)
357 TIGR00176 mobB molybdopterin-g 83.5 1 2.3E-05 47.2 3.6 26 10-35 2-27 (155)
358 PF10498 IFT57: Intra-flagella 83.5 13 0.00029 44.4 13.1 6 497-502 63-68 (359)
359 PRK08356 hypothetical protein; 83.3 0.79 1.7E-05 50.1 2.7 22 8-29 6-27 (195)
360 COG2433 Uncharacterized conser 83.3 20 0.00043 44.7 14.4 23 780-802 437-459 (652)
361 PRK15453 phosphoribulokinase; 83.3 0.95 2.1E-05 51.8 3.3 26 6-31 4-29 (290)
362 TIGR00455 apsK adenylylsulfate 83.2 0.98 2.1E-05 48.8 3.4 28 6-33 17-44 (184)
363 PRK08727 hypothetical protein; 83.1 1.2 2.6E-05 50.2 4.1 29 6-34 40-68 (233)
364 KOG0018 Structural maintenance 83.1 1.8E+02 0.004 39.0 29.2 39 831-869 402-440 (1141)
365 KOG3354 Gluconate kinase [Carb 83.1 1 2.3E-05 46.2 3.1 25 8-32 13-37 (191)
366 TIGR02338 gimC_beta prefoldin, 82.9 27 0.00058 34.4 12.9 32 832-863 11-42 (110)
367 TIGR02881 spore_V_K stage V sp 82.8 1.3 2.9E-05 50.7 4.5 30 6-35 41-70 (261)
368 COG4477 EzrA Negative regulato 82.8 1.3E+02 0.0029 37.2 24.1 14 569-582 57-70 (570)
369 PRK14528 adenylate kinase; Pro 82.6 1.1 2.4E-05 48.5 3.5 24 8-31 2-25 (186)
370 PRK10646 ADP-binding protein; 82.6 1.1 2.4E-05 46.8 3.2 25 8-32 29-53 (153)
371 PF08172 CASP_C: CASP C termin 82.6 10 0.00022 42.9 11.1 44 866-909 86-129 (248)
372 COG2805 PilT Tfp pilus assembl 82.5 1.1 2.3E-05 51.2 3.2 28 5-32 123-150 (353)
373 PRK12704 phosphodiesterase; Pr 82.5 1.5E+02 0.0032 37.6 24.6 15 1263-1277 415-429 (520)
374 cd01983 Fer4_NifH The Fer4_Nif 82.5 1.3 2.9E-05 41.4 3.6 25 10-34 2-26 (99)
375 cd01124 KaiC KaiC is a circadi 82.4 1.1 2.5E-05 48.1 3.5 27 9-35 1-27 (187)
376 COG4172 ABC-type uncharacteriz 82.4 0.82 1.8E-05 53.8 2.4 30 5-34 311-340 (534)
377 TIGR02928 orc1/cdc6 family rep 82.3 1.1 2.4E-05 53.9 3.7 30 4-33 37-66 (365)
378 PRK15093 antimicrobial peptide 82.3 1 2.3E-05 53.5 3.4 27 5-31 31-57 (330)
379 PF00005 ABC_tran: ABC transpo 82.3 1.1 2.3E-05 45.7 3.0 27 6-32 10-36 (137)
380 TIGR00554 panK_bact pantothena 82.3 1.8 3.9E-05 50.2 5.2 29 6-34 61-89 (290)
381 TIGR03499 FlhF flagellar biosy 82.2 1.3 2.9E-05 51.4 4.1 29 6-34 193-221 (282)
382 PRK13768 GTPase; Provisional 82.1 1.2 2.6E-05 50.8 3.7 27 9-35 4-30 (253)
383 PF00625 Guanylate_kin: Guanyl 82.1 1.1 2.5E-05 48.3 3.3 26 7-32 2-27 (183)
384 TIGR01166 cbiO cobalt transpor 82.1 1.1 2.4E-05 48.5 3.3 27 5-31 16-42 (190)
385 PRK15177 Vi polysaccharide exp 82.1 1.1 2.4E-05 49.7 3.3 28 5-32 11-38 (213)
386 PRK14732 coaE dephospho-CoA ki 82.0 1.3 2.9E-05 48.3 3.8 48 10-62 2-54 (196)
387 TIGR01359 UMP_CMP_kin_fam UMP- 82.0 1.1 2.3E-05 48.2 3.1 23 10-32 2-24 (183)
388 cd03116 MobB Molybdenum is an 82.0 1.4 3.1E-05 46.4 3.9 28 8-35 2-29 (159)
389 TIGR00634 recN DNA repair prot 82.0 1.3E+02 0.0028 38.8 22.2 51 846-900 323-373 (563)
390 TIGR02788 VirB11 P-type DNA tr 81.9 0.88 1.9E-05 53.5 2.6 26 7-32 144-169 (308)
391 PF01695 IstB_IS21: IstB-like 81.9 1.5 3.2E-05 47.2 4.1 29 6-34 46-74 (178)
392 COG0497 RecN ATPase involved i 81.9 1.5E+02 0.0033 37.5 21.5 180 729-909 160-357 (557)
393 TIGR02673 FtsE cell division A 81.9 1.1 2.5E-05 49.4 3.3 27 5-31 26-52 (214)
394 PRK11308 dppF dipeptide transp 81.9 1.1 2.4E-05 53.2 3.4 27 5-31 39-65 (327)
395 PF10226 DUF2216: Uncharacteri 81.8 31 0.00068 36.7 13.3 33 877-909 105-137 (195)
396 COG0802 Predicted ATPase or ki 81.8 1.2 2.6E-05 45.9 3.1 28 6-33 24-51 (149)
397 KOG0925 mRNA splicing factor A 81.8 0.45 9.8E-06 56.7 0.1 21 5-25 60-80 (699)
398 PRK10869 recombination and rep 81.8 83 0.0018 40.3 20.2 31 879-909 340-370 (553)
399 cd03293 ABC_NrtD_SsuB_transpor 81.8 1.1 2.4E-05 49.9 3.2 26 6-31 29-54 (220)
400 TIGR00960 3a0501s02 Type II (G 81.8 1.1 2.5E-05 49.5 3.3 27 5-31 27-53 (216)
401 PF07106 TBPIP: Tat binding pr 81.7 15 0.00033 39.1 11.7 63 830-892 71-135 (169)
402 PRK05416 glmZ(sRNA)-inactivati 81.7 1.1 2.3E-05 52.1 3.0 21 7-27 6-26 (288)
403 PF05262 Borrelia_P83: Borreli 81.7 97 0.0021 38.6 19.7 17 498-514 18-34 (489)
404 PRK10416 signal recognition pa 81.6 1.5 3.3E-05 51.6 4.4 32 5-36 112-143 (318)
405 cd03260 ABC_PstB_phosphate_tra 81.6 1.2 2.6E-05 49.8 3.4 27 5-31 24-50 (227)
406 PF14197 Cep57_CLD_2: Centroso 81.6 19 0.00042 32.3 10.2 65 842-906 2-66 (69)
407 PRK00698 tmk thymidylate kinas 81.6 1.5 3.2E-05 48.0 4.1 28 7-34 3-30 (205)
408 PRK15079 oligopeptide ABC tran 81.6 1.1 2.5E-05 53.2 3.3 27 5-31 45-71 (331)
409 PRK03839 putative kinase; Prov 81.6 1.2 2.6E-05 47.8 3.3 23 9-31 2-24 (180)
410 PRK09473 oppD oligopeptide tra 81.5 1.1 2.4E-05 53.2 3.2 27 5-31 40-66 (330)
411 TIGR03574 selen_PSTK L-seryl-t 81.5 1.2 2.5E-05 50.8 3.3 24 10-33 2-25 (249)
412 TIGR02868 CydC thiol reductant 81.5 0.84 1.8E-05 58.1 2.3 28 5-32 359-386 (529)
413 PF13514 AAA_27: AAA domain 81.5 2.5E+02 0.0054 39.4 37.3 21 12-32 1-21 (1111)
414 cd03225 ABC_cobalt_CbiO_domain 81.3 1.2 2.7E-05 49.0 3.4 27 5-31 25-51 (211)
415 PRK11022 dppD dipeptide transp 81.3 0.94 2E-05 53.8 2.5 28 5-32 31-58 (326)
416 PF11932 DUF3450: Protein of u 81.3 18 0.0004 41.1 12.9 55 832-886 43-97 (251)
417 PF05701 WEMBL: Weak chloropla 81.2 1.7E+02 0.0036 37.3 36.4 13 895-907 338-350 (522)
418 PRK15422 septal ring assembly 81.2 26 0.00056 31.9 10.7 13 896-908 48-60 (79)
419 PRK14531 adenylate kinase; Pro 81.1 1.4 3E-05 47.6 3.5 24 8-31 3-26 (183)
420 PRK03731 aroL shikimate kinase 81.0 1.5 3.2E-05 46.7 3.7 24 8-31 3-26 (171)
421 TIGR02880 cbbX_cfxQ probable R 81.0 1.3 2.9E-05 51.4 3.5 28 9-36 60-87 (284)
422 cd03259 ABC_Carb_Solutes_like 80.9 1.3 2.8E-05 49.0 3.4 27 5-31 24-50 (213)
423 PF06160 EzrA: Septation ring 80.8 1E+02 0.0022 39.6 20.6 20 608-627 91-110 (560)
424 cd03255 ABC_MJ0796_Lo1CDE_FtsE 80.8 1.3 2.9E-05 49.1 3.3 27 5-31 28-54 (218)
425 PRK10246 exonuclease subunit S 80.7 2.1E+02 0.0045 39.8 24.9 24 7-30 30-53 (1047)
426 PHA02530 pseT polynucleotide k 80.7 1.2 2.6E-05 52.1 3.1 24 8-31 3-26 (300)
427 PLN02796 D-glycerate 3-kinase 80.6 1.3 2.8E-05 52.3 3.2 23 10-32 103-125 (347)
428 KOG0056 Heavy metal exporter H 80.6 1.8 4E-05 51.9 4.4 41 6-46 563-603 (790)
429 smart00072 GuKc Guanylate kina 80.6 1.2 2.7E-05 48.0 2.9 23 9-31 4-26 (184)
430 cd03229 ABC_Class3 This class 80.5 1.4 3.1E-05 47.2 3.4 27 5-31 24-50 (178)
431 PF05557 MAD: Mitotic checkpoi 80.5 0.52 1.1E-05 62.1 0.0 8 1301-1308 656-663 (722)
432 PRK00411 cdc6 cell division co 80.5 1.5 3.2E-05 53.5 3.9 30 4-33 52-81 (394)
433 PRK00023 cmk cytidylate kinase 80.5 1.7 3.7E-05 48.7 4.0 25 7-31 4-28 (225)
434 TIGR03017 EpsF chain length de 80.4 78 0.0017 39.2 19.2 171 739-909 163-340 (444)
435 COG1493 HprK Serine kinase of 80.4 1.4 3E-05 50.3 3.2 24 8-31 146-169 (308)
436 cd03292 ABC_FtsE_transporter F 80.4 1.4 3E-05 48.8 3.3 27 5-31 25-51 (214)
437 cd03296 ABC_CysA_sulfate_impor 80.3 1.4 3E-05 49.8 3.3 27 5-31 26-52 (239)
438 PHA00729 NTP-binding motif con 80.3 1.6 3.5E-05 48.5 3.7 28 5-32 15-42 (226)
439 COG4088 Predicted nucleotide k 80.3 1.9 4E-05 46.6 3.9 25 10-34 4-28 (261)
440 TIGR02533 type_II_gspE general 80.2 1 2.2E-05 56.2 2.5 25 8-32 243-267 (486)
441 TIGR03608 L_ocin_972_ABC putat 80.2 1.4 3E-05 48.4 3.3 27 5-31 22-48 (206)
442 cd03258 ABC_MetN_methionine_tr 80.0 1.4 3.1E-05 49.4 3.4 28 5-32 29-56 (233)
443 PRK10436 hypothetical protein; 80.0 1.3 2.8E-05 54.9 3.1 26 7-32 218-243 (462)
444 COG1126 GlnQ ABC-type polar am 79.9 1.5 3.3E-05 47.8 3.2 22 6-27 27-48 (240)
445 cd03235 ABC_Metallic_Cations A 79.9 1.4 3E-05 48.8 3.1 27 5-31 23-49 (213)
446 cd02026 PRK Phosphoribulokinas 79.9 1.4 3E-05 50.9 3.2 22 10-31 2-23 (273)
447 COG2274 SunT ABC-type bacterio 79.8 1.2 2.5E-05 58.1 2.7 30 6-35 498-527 (709)
448 TIGR03752 conj_TIGR03752 integ 79.7 17 0.00036 44.4 12.0 79 830-908 58-137 (472)
449 PRK14974 cell division protein 79.7 1.9 4.2E-05 51.0 4.4 31 5-35 138-168 (336)
450 COG4619 ABC-type uncharacteriz 79.7 1.4 3E-05 46.0 2.7 26 6-31 28-53 (223)
451 COG1123 ATPase components of v 79.6 1.1 2.4E-05 55.6 2.3 27 7-33 317-343 (539)
452 PF00158 Sigma54_activat: Sigm 79.6 1.5 3.3E-05 46.6 3.2 24 6-29 21-44 (168)
453 cd03223 ABCD_peroxisomal_ALDP 79.6 1.6 3.5E-05 46.3 3.3 27 5-31 25-51 (166)
454 PLN03188 kinesin-12 family pro 79.6 2.5E+02 0.0054 38.7 23.3 18 166-183 199-216 (1320)
455 PRK13764 ATPase; Provisional 79.6 1.5 3.3E-05 55.6 3.7 27 7-33 257-283 (602)
456 PRK11176 lipid transporter ATP 79.5 1.3 2.8E-05 57.1 3.0 28 5-32 367-394 (582)
457 PRK06526 transposase; Provisio 79.5 1.7 3.7E-05 49.6 3.7 29 6-34 97-125 (254)
458 TIGR01000 bacteriocin_acc bact 79.4 1.7E+02 0.0038 36.4 23.9 23 878-900 289-311 (457)
459 cd01672 TMPK Thymidine monopho 79.4 1.7 3.7E-05 47.1 3.6 24 10-33 3-26 (200)
460 PF01580 FtsK_SpoIIIE: FtsK/Sp 79.3 1.6 3.5E-05 47.9 3.4 28 7-34 38-65 (205)
461 PRK12377 putative replication 79.3 1.8 4E-05 49.1 3.8 28 7-34 101-128 (248)
462 KOG1962 B-cell receptor-associ 79.2 11 0.00023 41.5 9.3 61 836-903 149-209 (216)
463 KOG4807 F-actin binding protei 79.1 1.4E+02 0.003 35.2 18.5 170 735-904 293-480 (593)
464 PF13173 AAA_14: AAA domain 79.1 1.9 4.1E-05 43.6 3.6 26 7-32 2-27 (128)
465 KOG0288 WD40 repeat protein Ti 79.1 44 0.00095 39.8 14.6 15 1039-1053 243-257 (459)
466 PRK02496 adk adenylate kinase; 79.1 1.6 3.5E-05 47.0 3.3 22 10-31 4-25 (184)
467 PRK11124 artP arginine transpo 79.1 1.6 3.5E-05 49.3 3.4 27 5-31 26-52 (242)
468 cd03224 ABC_TM1139_LivF_branch 79.0 1.6 3.5E-05 48.5 3.3 27 5-31 24-50 (222)
469 PF14532 Sigma54_activ_2: Sigm 79.0 1.1 2.3E-05 46.1 1.7 25 6-30 20-44 (138)
470 TIGR02315 ABC_phnC phosphonate 79.0 1.6 3.5E-05 49.3 3.3 27 5-31 26-52 (243)
471 cd03297 ABC_ModC_molybdenum_tr 79.0 1.6 3.4E-05 48.4 3.2 26 5-31 22-47 (214)
472 cd03268 ABC_BcrA_bacitracin_re 78.9 1.7 3.6E-05 47.9 3.4 27 5-31 24-50 (208)
473 TIGR03864 PQQ_ABC_ATP ABC tran 78.9 1.6 3.6E-05 49.1 3.4 27 5-31 25-51 (236)
474 PRK12402 replication factor C 78.9 1.7 3.7E-05 51.6 3.7 26 8-33 37-62 (337)
475 PF07889 DUF1664: Protein of u 78.8 26 0.00057 35.3 11.3 65 836-900 59-123 (126)
476 cd03256 ABC_PhnC_transporter A 78.8 1.6 3.6E-05 49.1 3.3 27 5-31 25-51 (241)
477 COG2804 PulE Type II secretory 78.8 1.6 3.4E-05 53.5 3.3 25 9-33 260-284 (500)
478 PRK08084 DNA replication initi 78.8 1.7 3.7E-05 49.0 3.5 28 6-33 44-71 (235)
479 COG0419 SbcC ATPase involved i 78.7 2.7E+02 0.0058 38.2 28.9 56 852-907 389-444 (908)
480 TIGR00064 ftsY signal recognit 78.7 2.2 4.7E-05 49.2 4.3 31 5-35 70-100 (272)
481 COG3096 MukB Uncharacterized p 78.7 2E+02 0.0044 36.7 23.2 49 864-912 1064-1112(1480)
482 cd03222 ABC_RNaseL_inhibitor T 78.6 1.7 3.8E-05 46.6 3.3 28 5-32 23-50 (177)
483 PF05557 MAD: Mitotic checkpoi 78.6 0.65 1.4E-05 61.2 0.0 13 896-908 307-319 (722)
484 cd03266 ABC_NatA_sodium_export 78.6 1.7 3.7E-05 48.2 3.3 26 5-30 29-54 (218)
485 cd03270 ABC_UvrA_I The excisio 78.6 1.7 3.7E-05 48.7 3.3 24 5-28 19-42 (226)
486 TIGR01184 ntrCD nitrate transp 78.6 1.7 3.7E-05 48.8 3.3 27 5-31 9-35 (230)
487 cd03230 ABC_DR_subfamily_A Thi 78.5 1.8 3.8E-05 46.3 3.3 24 5-28 24-47 (173)
488 cd03219 ABC_Mj1267_LivG_branch 78.5 1.6 3.5E-05 49.1 3.1 24 5-28 24-47 (236)
489 PRK10908 cell division protein 78.5 1.7 3.8E-05 48.3 3.4 24 5-28 26-49 (222)
490 PF10212 TTKRSYEDQ: Predicted 78.4 1.9E+02 0.004 36.2 21.5 190 712-907 267-514 (518)
491 PF06818 Fez1: Fez1; InterPro 78.4 73 0.0016 34.8 15.2 123 777-909 8-153 (202)
492 PF02994 Transposase_22: L1 tr 78.4 5.7 0.00012 47.9 7.9 132 773-910 49-188 (370)
493 cd03238 ABC_UvrA The excision 78.3 1.9 4E-05 46.4 3.4 24 5-28 19-42 (176)
494 cd03265 ABC_DrrA DrrA is the A 78.3 1.8 3.9E-05 48.2 3.4 24 5-28 24-47 (220)
495 PRK13539 cytochrome c biogenes 78.3 1.8 3.9E-05 47.7 3.4 24 5-28 26-49 (207)
496 cd03262 ABC_HisP_GlnQ_permease 78.2 1.8 3.9E-05 47.8 3.4 24 5-28 24-47 (213)
497 cd03226 ABC_cobalt_CbiO_domain 78.2 1.8 3.8E-05 47.6 3.3 24 5-28 24-47 (205)
498 PRK09343 prefoldin subunit bet 78.2 52 0.0011 33.1 13.3 86 824-909 7-114 (121)
499 PRK10361 DNA recombination pro 78.2 1.9E+02 0.004 36.0 26.7 188 709-908 3-193 (475)
500 PRK14961 DNA polymerase III su 78.1 2.1 4.5E-05 51.7 4.1 29 3-31 34-62 (363)
No 1
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.8e-204 Score=1878.87 Aligned_cols=1230 Identities=33% Similarity=0.507 Sum_probs=942.0
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|+.+++||||||||||||||||+||+||+|||+++++.+.....||++|+|+||||||||||||+|||||||||||++|.
T Consensus 146 lls~~eNQtIiISGESGAGKTe~aK~ImqYlasv~~s~~~~~~~iE~~ILaTNPILEAFGNAkTvRNdNSSRFGKyikI~ 225 (1463)
T COG5022 146 LLSEKENQTIIISGESGAGKTENAKRIMQYLASVTSSSTVEISSIEKQILATNPILEAFGNAKTVRNDNSSRFGKYIKIE 225 (1463)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCcchHHHHHHHHHhcchHHHHhccccccccCCcccccceEEEE
Confidence 67889999999999999999999999999999998876656679999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhcC-CHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAA-PHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~~-~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|+||||||||||+|+.+|||||||||||++ ++..++.+++..|.+|+||++|+|..++|+||+++|..
T Consensus 226 Fd~~g~I~GA~I~~YLLEKSRVV~Q~~~ERNYHIFYQll~G~~~~~k~~~~~~~~~dY~Yl~~~~~~~I~gIdD~kefk~ 305 (1463)
T COG5022 226 FDENGEICGAKIETYLLEKSRVVHQNKNERNYHIFYQLLAGDPEELKKLLLLQNPKDYIYLSQGGCDKIDGIDDAKEFKI 305 (1463)
T ss_pred ECCCCceechhhhhhhhhhhhhccCCCCccchhhhhhHhcCChHHHHHHhhccChHhhHhHhhcCCCcCCCcccHHHHHH
Confidence 99999999999999999999999999999999999999995 44555566779999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeCC
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 239 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 239 (1388)
|+.||+++||+.++|.+||+|||||||||||+|..+++ +.+...++ ..+..+|.|||||++.|.+||++|.|.+++
T Consensus 306 t~~AlktiGi~~eeq~~IF~iLAaILhiGNIef~~~r~-g~a~~~~~---~~~~~~c~LLgId~~~f~k~lvk~~ikt~~ 381 (1463)
T COG5022 306 TLDALKTIGIDEEEQDQIFKILAAILHIGNIEFKEDRN-GAAIFSDN---SVLDKACYLLGIDPSLFVKWLVKRQIKTGG 381 (1463)
T ss_pred HHHHHHHhCCChHHHHHHHHHHHHHHhhcceeeeeccc-chhhcCCc---hHHHHHHHHhCCCHHHHHHHHHHhHhhcCc
Confidence 99999999999999999999999999999999988664 34444433 359999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHHHH
Q 000617 240 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 319 (1388)
Q Consensus 240 e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~ 319 (1388)
|.|.+|++..||..+||||||+||++||+|||++||.+|..++...+|||||||||||+|+.|||||||||||||||||+
T Consensus 382 E~i~~~~n~~QA~~irdslAK~lY~~lFdwiV~rIN~sL~~~~~~~~fIGVLDIyGFEiFEkNSFEQlCINYtNEKLQQ~ 461 (1463)
T COG5022 382 EWIVVPLNLEQALAIRDSLAKALYSNLFDWIVDRINKSLDHSAAASNFIGVLDIYGFEIFEKNSFEQLCINYTNEKLQQF 461 (1463)
T ss_pred eEEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCccccccceeEEeecchhhhccCcHHHHHHhhhhHHHHHH
Confidence 99999999999999999999999999999999999999998777789999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhc-CcccccccchhhhcCCCCChHhHHHHHHHHhh--cCCCCCCC
Q 000617 320 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNRFSKP 396 (1388)
Q Consensus 320 f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~-~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~~~kp 396 (1388)
||+|||++||+||.+|||+|++|+|.||||||||||+ .|.|||++|||||.+|.|+|++|..||++.+. .++.|.+|
T Consensus 462 Fn~h~FklEQEeY~kE~IeW~~Idy~DnQ~~IDLIE~~~p~GIlslLDEE~~~p~atd~s~~sKL~~~l~~~~~~~f~~~ 541 (1463)
T COG5022 462 FNQHMFKLEQEEYVKEGIEWSFIDYFDNQPCIDLIEKKNPLGILSLLDEECVMPHATDESFTSKLAQRLNKNSNPKFKKS 541 (1463)
T ss_pred HHHHHHHHHHHHHHHhcCcccccccccCcchhHHHhccCCCchHhhhcHHhcCCCCCchHHHHHHHHHhccccCcccccc
Confidence 9999999999999999999999999999999999998 23499999999999999999999999999886 46789999
Q ss_pred CCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHHHH
Q 000617 397 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLME 476 (1388)
Q Consensus 397 ~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L~~ 476 (1388)
|++.+.|+|.||||+|+|+++||++||+|++++++++|+..|+|+||..||+.... ..+.++++|+|+.||.||..||+
T Consensus 542 rf~~~~FvvkHYAgDVeY~veg~ldKNkD~l~~~ll~Ll~~StNe~vs~Lf~~~~~-~~~K~~~pT~gs~~K~sl~~Lm~ 620 (1463)
T COG5022 542 RFRDNKFVVKHYAGDVEYDVEGFLDKNKDPLNDDLLELLKASTNEFVSTLFDDEEN-IESKGRFPTLGSRFKESLNSLMS 620 (1463)
T ss_pred ccCCCceEEEeecccceeeccchhhhCcchhhHHHHHHHhhccchHHHHhhhhhhh-ccccCCCCcHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999995433 33447889999999999999999
Q ss_pred HHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccccccc-----CCCc
Q 000617 477 TLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-----GNYD 551 (1388)
Q Consensus 477 ~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-----~~~d 551 (1388)
+|++|+||||||||||..|.|+.||+.+|++|||||||+|+|||+|+|||+||+|+||+.||++|.|...+ +..|
T Consensus 621 tl~sTqphyIRCIkPN~~K~p~~fD~~mVL~QLr~~GVlE~IRIsraGFP~R~~f~EFv~RY~IL~p~~~~~~~~~~~~~ 700 (1463)
T COG5022 621 TLNSTQPHYIRCIKPNEEKSPWTFDNQMVLSQLRCCGVLETIRISRAGFPSRWTFDEFVQRYRILSPSKSWTGEYTWKED 700 (1463)
T ss_pred HHHhcCCceeEeeCCCcccCccccchHHHHHHHHhcchhhheeeccccCchhhhHHHHHHHHHHhcccccccccccchhH
Confidence 99999999999999999999999999999999999999999999999999999999999999999997432 2346
Q ss_pred hHHHHHHHHhhcCCC--CceeccceeeecchhhHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 000617 552 DQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRG 629 (1388)
Q Consensus 552 ~~~~~~~ll~~~~~~--~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg 629 (1388)
.+.+|+.||..+.++ .||+|+||||||+|+++.||.+|...++.++++||++|||++.|++|....+.+..+|...+|
T Consensus 701 ~~~~~~~IL~~~~id~~~YqiG~TKvFfKagvL~~LE~~Rd~~~~~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~ 780 (1463)
T COG5022 701 TKNAVKSILEELVIDSSKYQIGNTKVFFKAGVLAALEDMRDAKLDNIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHG 780 (1463)
T ss_pred HHHHHHHHHHhhcCChhheeccceeEEeeCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 899999999998765 699999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhHH-HhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHH
Q 000617 630 EMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQ-TGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSY 708 (1388)
Q Consensus 630 ~laR~~~~~~r~~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQ-s~~Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~ 708 (1388)
++.|++...--...+++.+|..||....|+.|+.....++.+| ..+|....+.........++++.+|+.||.+..+++
T Consensus 781 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq~~i~~~~~~~~~~e~~~~~~~~~L~~~~~rs~~~~kr 860 (1463)
T COG5022 781 FRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQKTIKREKKLRETEEVEFSLKAEVLIQKFGRSLKAKKR 860 (1463)
T ss_pred cchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhhhhhHH
Confidence 9999877666666789999999999999999999999999999 667777666666677778899999999999999999
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 709 YKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEAL 788 (1388)
Q Consensus 709 ~~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~l 788 (1388)
|..+.+..+.+|+.+|...|++++..++...+++..+......++..+.++...++......... +.+....|+..+
T Consensus 861 ~~~L~k~~i~~~~~~r~~~a~r~~~e~k~~~~~~~~l~~~~~~l~~~~~el~~~~~s~~~~~~~~---k~e~~a~lk~~l 937 (1463)
T COG5022 861 FSLLKKETIYLQSAQRVELAERQLQELKIDVKSISSLKLVNLELESEIIELKKSLSSDLIENLEF---KTELIARLKKLL 937 (1463)
T ss_pred HHHhhhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhHHHHHHHHHHhhccchhhhhhhHH---HHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999988866555211000000 001111111111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 789 HAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAK 867 (1388)
Q Consensus 789 e~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~-~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~ 867 (1388)
.. ..+++.+... ....++..|.....+|++...+....+...+....+....
T Consensus 938 ~~---------------------------~d~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~ 990 (1463)
T COG5022 938 NN---------------------------IDLEEGPSIEYVKLPELNKLHEVESKLKETSEEYEDLLKKSTILVREGNKA 990 (1463)
T ss_pred hc---------------------------ccccchhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhcccH
Confidence 11 0011111111 1111334444444444444433333332222222222221
Q ss_pred HH---HHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHhhcChhhhhhhhCccccccccCCCCCCCCCC
Q 000617 868 NG---ELTKKLKDAEKRVDELQDSVQRLAEK---VSNLESENQVLRQQALAISPTAKALAARPKTTIIQRTPVNGNILNG 941 (1388)
Q Consensus 868 ~~---~l~~~l~~le~~i~~Lq~el~~lee~---i~~Le~E~~~Lkqq~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~ 941 (1388)
.. ...+.+.+...+...++.....+++. +..|....+....... ..+.......+......
T Consensus 991 ~~el~~~~~~l~~~~~~~~~l~~~~~~lk~~~~~~~~l~~~~~~~~s~~~-----------~~~~~~~~~~~~~~~~~-- 1057 (1463)
T COG5022 991 NSELKNFKKELAELSKQYGALQESTKQLKELPVEVAELQSASKIISSEST-----------ELSILKPLQKLKGLLLL-- 1057 (1463)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhcccccchhhhhhhhhhhhccchh-----------hhhccCcccchhhhhhH--
Confidence 11 11112222211111222222222221 2222222222211000 00000000000000000
Q ss_pred ccccccCcccccCCCCCCCCCccccccchhhhhccHHHHHHhhh-ccCCCCC-CccchHHHHHH-HHhcccc-cchhhHH
Q 000617 942 EMKKVHDSVLTVPGVRDVEPEHRPQKTLNEKQQENQDLLIKCIS-QDLGFSG-GKPVAACLIYK-CLLHWRS-FEVERTS 1017 (1388)
Q Consensus 942 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~l~~~l~-~~~~~~~-~kp~pA~il~~-c~~~~~~-~~~e~~~ 1017 (1388)
+...........+... +....-.......+....+++.+. +++.+.+ .-+.||..+.- ...+|+. ...+...
T Consensus 1058 ~~~~l~~~~~~l~~~r----~~~~~~~~q~~~~e~t~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~~~~~~ 1133 (1463)
T COG5022 1058 ENNQLQARYKALKLRR----ENSLLDDKQLYQLESTENLLKTINVKDLEVTNRNLVKPANVLQFIVAQMIKLNLLQEISK 1133 (1463)
T ss_pred HHHHhhhhHhhhhhcC----cccchhHHHHHHHHhhhhhhhhhccchhhhhcccccchhhHHHHHHHHhhccchHHhhhh
Confidence 0000000000000000 000000000111222233343333 3232222 11225544443 3366775 4455566
Q ss_pred HHHHHHHHHHhhhhc---cCCccccchhhHHHHHHHHHHHHHhhhcCCCCCCcccccCCccchhhhcccccCCCCCCCCC
Q 000617 1018 IFDRIIQTISGAIEV---HDNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGI 1094 (1388)
Q Consensus 1018 ll~~ii~~I~~~v~~---~~d~~~l~fWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1094 (1388)
++...+..++.+... .+-.-.+.||.+|...+++.---. ...+.+.. ..+++ +.
T Consensus 1134 ~~~~~~~~le~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~-------~~~~~~~~--~~~~~--------------d~ 1190 (1463)
T COG5022 1134 FLSQLVNTLEPVFQKLSVLQLELDGLFWEANLEALPSPPPFA-------ALSEKRLY--QSALY--------------DE 1190 (1463)
T ss_pred HHHHHHhhccchhccccchhccccccccccccccCCCCCchh-------hcchhhhh--Hhhhh--------------cc
Confidence 777767777766553 233345789999999887311000 00000000 00000 00
Q ss_pred cccccccccccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhc--CCCCCccccccCCCcchhhh
Q 000617 1095 PFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQ--APRTSRASLIKGRSQANAVA 1172 (1388)
Q Consensus 1095 ~~~~~~l~~~~~~~~~v~~~~~~~~~kqqL~~l~~~iy~~l~~~~~~~l~~~L~~~i~--~~~~~~~~~~~~~~~~~~~~ 1172 (1388)
+ ..+..++ .-..+..+..+..++|..|.... .+.+++...+- ......+++. .++..+
T Consensus 1191 ~-----~~~s~s~---------v~~l~~~l~~~~~~~~~~~~~~~--~~~~~~~e~~~~~~~~~~~~~~~----~~~~~~ 1250 (1463)
T COG5022 1191 K-----SKLSSSE---------VNDLKNELIALFSKIFSGWPRGD--KLKKLISEGWVPTEYSTSLKGFN----NLNKKF 1250 (1463)
T ss_pred c-----ccccHHH---------HHHHHHHHHHHHHhccccchhhh--hhhhhhhhccchhhhcccccccc----chhhcc
Confidence 0 0000011 22446778888888999887665 23333321110 0001111110 011223
Q ss_pred hhhhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHhhchhHHHHHHhhc
Q 000617 1173 QQALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDS 1252 (1388)
Q Consensus 1173 ~~~~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~ 1252 (1388)
..++..+.++++.+++.+.+.++.+.+.+.+..-.++++.-++|+.+||.|..|..-..|+.|.++.+|.+.+++||+.+
T Consensus 1251 ~~~~~~~~~~ll~~~n~i~~~~~s~~~~~~~~~~~i~~~~~~~~~~~~n~L~~~~~~~~~k~~~~~~~n~~~~~~w~~~~ 1330 (1463)
T COG5022 1251 DTPASMSNEKLLSLLNSIDNLLSSYKLEEEVLPATINSLLQYINVGLFNALRTKASSLRWKSATEVNYNSEELDDWCREF 1330 (1463)
T ss_pred cCcccCcHHHHHHHHHHHHHHHHHhhcchhhhhHHHHhHhhhcchhhhhhhhcccCccchhhcccccccchhhhHHHHhh
Confidence 34455678899999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccccchHHHhHHHHHHHHHHhhcCCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhh
Q 000617 1253 TEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMM 1330 (1388)
Q Consensus 1253 ~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Qi~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~ 1330 (1388)
+ -..+..+|++++||++.+++.++...+++++ .+.|.+|+|.|+.+|+.+|.|.++| .++|.++..+|.+...
T Consensus 1331 ~---i~~~~~~l~~l~q~~k~~~~~~~dl~~~~~~-~~~~~~l~~~~~~~L~~~y~~~~~e-~~l~ke~~~~~~a~~~ 1403 (1463)
T COG5022 1331 E---ISDVDEELEELIQAVKVLQLLKDDLNKLDEL-LDACYSLNPAEIQNLKSRYDPADKE-NNLPKEILKKIEALLI 1403 (1463)
T ss_pred c---ccchHHHHHHHHhhhhhhhhhhCCHHHHHHH-HHHHHhcCHHHHHHHHHhhhhhccc-CCChHHHHHHHhhhhh
Confidence 8 3445589999999999999998777777777 6999999999999999999999998 4999999977765544
No 2
>PTZ00014 myosin-A; Provisional
Probab=100.00 E-value=1.8e-167 Score=1570.96 Aligned_cols=631 Identities=36% Similarity=0.577 Sum_probs=587.3
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|+++++||||||||||||||||++|+||+|||.+++... ...|+++|+++||||||||||||++||||||||||++|+
T Consensus 177 m~~~~~~QsIiiSGESGAGKTe~tK~im~yla~~~~~~~--~~~ie~~Il~sNpiLEAFGNAKT~rNdNSSRFGKfi~i~ 254 (821)
T PTZ00014 177 LHGVKKSQTIIVSGESGAGKTEATKQIMRYFASSKSGNM--DLKIQNAIMAANPVLEAFGNAKTIRNNNSSRFGRFMQLQ 254 (821)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhccCCC--cccHHHHHHHHHHHHHHhhccCcCCCCCcCcceeEEEEE
Confidence 778899999999999999999999999999999865322 357999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++ +|+.++++||+++|.+
T Consensus 255 F~~~g~i~Ga~I~~YLLEKSRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~-~~~~~~~~dD~~~f~~ 333 (821)
T PTZ00014 255 LGEEGGIRYGSIVAFLLEKSRVVTQEDDERSYHIFYQLLKGANDEMKEKYKLKSLEEYKYINP-KCLDVPGIDDVKDFEE 333 (821)
T ss_pred EcCCCcEeeEEEEEEeccCceeeecCCCCCCEeHHHHHHhCCCHHHHHHcCCCChHhccccCC-CCccCCCCchHHHHHH
Confidence 9999999999999999999999999999999999999999 7889999999999999999995 5888999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc---CcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEE
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 236 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 236 (1388)
|+.||++|||+++++..||+|||||||||||+|.+... .|++.+.+ .+...+..+|+||||++++|.++||+|.+.
T Consensus 334 ~~~A~~~lg~s~~e~~~If~ilaaILhLGNi~F~~~~~~~~~~~~~i~~-~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~ 412 (821)
T PTZ00014 334 VMESFDSMGLSESQIEDIFSILSGVLLLGNVEIEGKEEGGLTDAAAISD-ESLEVFNEACELLFLDYESLKKELTVKVTY 412 (821)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEeccccCCCCCceeccC-CCHHHHHHHHHHhCCCHHHHHHHhhceEEE
Confidence 99999999999999999999999999999999976431 24444443 234579999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHH
Q 000617 237 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 316 (1388)
Q Consensus 237 ~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkL 316 (1388)
++++.+++|+++++|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||||||
T Consensus 413 ~~~e~i~~~~~~~qA~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IGiLDI~GFE~f~~NSfEQLcINy~NEkL 492 (821)
T PTZ00014 413 AGNQKIEGPWSKDESEMLKDSLSKAVYEKLFLWIIRNLNATIEPPGGFKVFIGMLDIFGFEVFKNNSLEQLFINITNEML 492 (821)
T ss_pred eCCeeEecCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCceEEEEecccccccCcchHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998766788999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCC
Q 000617 317 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 396 (1388)
Q Consensus 317 q~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp 396 (1388)
||+|++|||+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|++|.+|
T Consensus 493 Qq~F~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~idLie~k~~GIl~lLDEec~~p~~tD~~f~~kl~~~~~~~~~f~~~ 572 (821)
T PTZ00014 493 QKNFVDIVFERESKLYKDEGISTEELEYTSNESVIDLLCGKGKSVLSILEDQCLAPGGTDEKFVSSCNTNLKNNPKYKPA 572 (821)
T ss_pred HHHHHHHHHHHHHHHHHHccccCCCCCCCCcHHHHHHHhcCCccHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCCCccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CC-CCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHHH
Q 000617 397 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLM 475 (1388)
Q Consensus 397 ~~-~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L~ 475 (1388)
+. ....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+......++..+.+||+++|+.||+.||
T Consensus 573 ~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~s~Fk~qL~~Lm 652 (821)
T PTZ00014 573 KVDSNKNFVIKHTIGDIQYCASGFLFKNKDVLRPELVEVVKASPNPLVRDLFEGVEVEKGKLAKGQLIGSQFLNQLDSLM 652 (821)
T ss_pred CCCCCCceEEEEeceeeeeccCcHHHhccccchHHHHHHHHhCccHHHHHHhcccccccccccCCCcHHHHHHHHHHHHH
Confidence 86 46799999999999999999999999999999999999999999999998754333344466899999999999999
Q ss_pred HHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccccccc-CCCchHH
Q 000617 476 ETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQV 554 (1388)
Q Consensus 476 ~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~d~~~ 554 (1388)
++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|.+.... ...|+++
T Consensus 653 ~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~f~~F~~rY~~L~~~~~~~~~~d~k~ 732 (821)
T PTZ00014 653 SLINSTEPHFIRCIKPNENKKPLDWNSSKVLIQLHSLSILEALQLRQLGFSYRRTFAEFLSQFKYLDLAVSNDSSLDPKE 732 (821)
T ss_pred HHHhccCCeEEEEeCcCcccCccccchHhHHHHhhhhhHHHHHHHHhcCCcccccHHHHHHHHHhcCcccccCCCCCHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999876443 2358999
Q ss_pred HHHHHHhhcCC--CCceeccceeeecchhhHHHHHHHHhhhh---hHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHH
Q 000617 555 ACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAEVLG---NAARKIQRQTRTYIARKEFILLRNAAVILQSFLRG 629 (1388)
Q Consensus 555 ~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r~~~l~---~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg 629 (1388)
+|+.||..+++ ++|++|+||||||+++++.||.+|.+++. .+++.||++||||++|++|.+++.+++.||+++||
T Consensus 733 ~~~~il~~~~l~~~~~~iGkTKVFlr~~~~~~Le~~~~~~~~~~~~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~ 812 (821)
T PTZ00014 733 KAEKLLERSGLPKDSYAIGKTMVFLKKDAAKELTQIQREKLAAWEPLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRR 812 (821)
T ss_pred HHHHHHHHcCCCcccEEecCCeEEEcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999876 58999999999999999999998888764 57888999999999999998888888888888888
Q ss_pred HHHHHH
Q 000617 630 EMARKL 635 (1388)
Q Consensus 630 ~laR~~ 635 (1388)
|++++.
T Consensus 813 ~l~~~~ 818 (821)
T PTZ00014 813 HLVIAE 818 (821)
T ss_pred HHHHhc
Confidence 888754
No 3
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=100.00 E-value=9.4e-161 Score=1468.29 Aligned_cols=670 Identities=63% Similarity=0.983 Sum_probs=642.1
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.+++.||+||||||||||||+++|++|+||++++++ ..+++||++|+++||||||||||||++||||||||||++|+
T Consensus 88 m~~~~~~QsIivsGESGAgkT~~aK~~m~yla~v~~~--~~~~~vE~~vL~snpi~EafgNakT~rndnsSrFgK~iei~ 165 (862)
T KOG0160|consen 88 MTPDGVNQSIIVSGESGAGKTETAKYLMEYLASVGGS--VEGRSIENKVLASNPILEAFGNAKTTRNDNSSRFGKVIEIT 165 (862)
T ss_pred hhhccCCceeeeeCCCCCchhHHHHHHHHHHHHHhcc--chhhHHHHHHHhcCCcchhhccchhhhcccHHHhhhHHHHh
Confidence 7889999999999999999999999999999999886 34679999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhcCCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLAT 160 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~ 160 (1388)
||..|+|+||+|+|||||||||+.++++|||||||||+|++.++++++|.|+++..|+|++|++|..+++++|+.+|..|
T Consensus 166 Fd~~~~I~GA~~~TYLLekSRv~~~~~~ernyhiFyQlca~~~~~~~~l~L~~~~~f~yl~q~~~~~i~~v~d~~e~~~t 245 (862)
T KOG0160|consen 166 FDQQGRISGAKIRTYLLEKSRVVQLSAPERNYHIFYQLCAGAPEELEKLKLGTLRRFSYLNQSACVLISGVSDAEEFLST 245 (862)
T ss_pred hhhhcccccceeeeEEeecceeeecCccccchHHHHHHhcCCchhhhccCcCccccceecccccchhhcccccHHHHHHH
Confidence 99999999999999999999999999999999999999995449999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeCCc
Q 000617 161 RRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEE 240 (1388)
Q Consensus 161 ~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e 240 (1388)
+.||..+||+.++|..||++||||||||||+|..+.+.+++.+.++ ++..+|.|||++.+.|..||++|.+.++++
T Consensus 246 ~~A~~~vgi~~~~q~~if~lla~ilhlGni~f~~~~~~~~~~~~~~----~~~~~a~Llg~~~~~l~~~L~~r~i~~~~e 321 (862)
T KOG0160|consen 246 TEAMLFVGISESHQELIFRLLAAILHLGNIQFSSGVEETSSSPVDD----HLWTAAELLGCDEEALEQWLSKRKILTARE 321 (862)
T ss_pred HHHHHHhcCChHHHHHHHHHHHHHhccCceEeecccccccccccch----HHHHHHHHhCCCHHHHHHHHHHHHhhcccc
Confidence 9999999999999999999999999999999988776555555543 789999999999999999999999999999
Q ss_pred eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCC-CCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHHHH
Q 000617 241 VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQ-DPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQH 319 (1388)
Q Consensus 241 ~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~-~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~ 319 (1388)
+|+++++..+|...||++||.||++||+|+|+.||.+|+. ++....+||||||||||+|+.|||||||||||||||||+
T Consensus 322 ~i~k~l~~~qa~~~rD~lak~iys~LFdwlV~~in~sL~~~~~~~~~~igVLDiYgFEsF~~nsfeQfcINyanEkLqq~ 401 (862)
T KOG0160|consen 322 SIVKPLTLSQAVKRRDALAKQLYSLLFDWLVAKINGSLGANDPKAERFIGVLDIYGFESFEVNSFEQFCINYANEKLQQQ 401 (862)
T ss_pred eeecccCHHHHHHhhhhhHHHHHHHHHHHHHHHhhcccccCCCCccceeeeehcccccccccCcHHHhhhhhHHHHhhHH
Confidence 9999999999999999999999999999999999999997 445689999999999999999999999999999999999
Q ss_pred HHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCCCCC
Q 000617 320 FNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS 399 (1388)
Q Consensus 320 f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~~~ 399 (1388)
||+|||+.||++|.+|+|+|+.|+|.||++|+|+|++ |.||++||||+|++|.++|++|..||+..+.+++.|.+|+++
T Consensus 402 fnqHvfk~Eqeey~~e~i~Ws~ief~dNq~~~~lie~-~~Gi~~Llde~c~lp~~t~~~~a~KL~~~~~~~~~f~kpr~~ 480 (862)
T KOG0160|consen 402 FNQHVFKLEQEEYTKEEIDWSGIEFRDNQECLDLIEK-PLGILALLDEECMLPKGTDETLAQKLYQTLKRNKRFTKPRLS 480 (862)
T ss_pred HHHHHHHHHHHHHHhhccccccccCcCccchhhhhcc-ccchhhccchhccCCCCCcchHHHHHHHHhccCCccCCCCCC
Confidence 9999999999999999999999999999999999998 779999999999999999999999999999999999999999
Q ss_pred CCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHc
Q 000617 400 RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLN 479 (1388)
Q Consensus 400 ~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L~~~l~ 479 (1388)
++.|+|.||||+|+|+++||++||+|+|++++.+++..|+++|+..+|++...+..+.++++||+++|+.+|..||.+|+
T Consensus 481 ~~~f~v~hyAg~v~y~~~~fL~knrd~v~~el~~ll~~s~~~~~~~~~~~~~~~~~~~~~~~tv~s~fk~~l~~Lm~~l~ 560 (862)
T KOG0160|consen 481 RTDFRVAHYAGDVTYDTEGFLEKNRDYVSDELIDLLLASDCHFVAGLAPPLRADSSAKSKRSTVGSQFKLQLISLMETLN 560 (862)
T ss_pred cCCcccccccCccccchhhhccCCccccCHHHHhhhhhcccchHHHhccchhcchhhhhhcccHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999997666655567889999999999999999999
Q ss_pred ccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccccCCCchHHHHHHH
Q 000617 480 ATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMI 559 (1388)
Q Consensus 480 ~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~l 559 (1388)
+|+||||||||||+.+.|+.||+.+|++|||+|||||++||+++|||+||+|.||+.||++|+| ... ..|++..|+.+
T Consensus 561 ~t~phyircikPn~~~~p~~fe~~~v~~Qlr~~GvLetiRiS~~g~P~r~~~~Ef~~r~~~L~~-~~~-~~~~~~~~~~i 638 (862)
T KOG0160|consen 561 STPPHYIRCIKPNAEKKPQIFENNLVLQQLRCCGVLETIRISCAGFPTRWTFIEFVNRYGILMP-NDS-ASDDLSLCKVI 638 (862)
T ss_pred CCCCCCceeeCcchhcccccccccceeeeccccceehhheeccccCCccccHHHHHHHHhhcCc-chh-cccchHHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999 333 34569999999
Q ss_pred HhhcCCCCceeccceeeecchhhHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Q 000617 560 LDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQL 639 (1388)
Q Consensus 560 l~~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg~laR~~~~~~ 639 (1388)
|+.++.+.||+|+||||||+|+++.||.+|.+++..+++.||+.+|+|+.|++|..+|++++.||+++||+++|+ ..+
T Consensus 639 l~~~~~~~yq~g~tkif~r~gq~~~le~~R~~vl~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~ 716 (862)
T KOG0160|consen 639 LEKLGLELYQIGKTKIFLRAGQIAVLEARRSDVLSAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE 716 (862)
T ss_pred HHHhchhceeeeeeeeeeccchhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH
Confidence 999999999999999999999999999999999999999999999999999999999999999999999999998 444
Q ss_pred hHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHH
Q 000617 640 RREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 682 (1388)
Q Consensus 640 r~~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr 682 (1388)
+..||+.||+.||+|..|++|+..+.+++.+|+.+||+++|+
T Consensus 717 -~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs~~r~~~~r~ 758 (862)
T KOG0160|consen 717 -REAAAIGIQKECRSYLNRRRYRALIPASITIQSGVRAMLARN 758 (862)
T ss_pred -HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 778999999999999999999999999999999999999888
No 4
>cd01384 MYSc_type_XI Myosin motor domain, plant-specific type XI myosin, involved in organelle transport. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new act
Probab=100.00 E-value=1.4e-159 Score=1484.17 Aligned_cols=593 Identities=86% Similarity=1.313 Sum_probs=567.3
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.+.++||||||||||||||||++|++|+|||.+++..+....+|+++|+++||||||||||||++|+||||||||++|+
T Consensus 82 m~~~~~~QsIiisGESGaGKTe~~K~il~yLa~~~~~~~~~~~~i~~~il~~npiLEAFGNAkT~~N~NSSRFGK~~~l~ 161 (674)
T cd01384 82 MINEGKSQSILVSGESGAGKTETTKMLMRYLAYMGGRAGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 161 (674)
T ss_pred HHHcCCCceEEEECCCCCCchhHHHHHHHHHHhhcCCCCcccccHHHHHHHHHHHHHHhhCCCCCCCCCcchhheeEEEE
Confidence 67789999999999999999999999999999998765545578999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhcCCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCAAPHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLAT 160 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~ 160 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||++++++++.|+|.++.+|+||++++|..++++||+++|.+|
T Consensus 162 f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~D~~~f~~~ 241 (674)
T cd01384 162 FDDYGRISGAAIRTYLLERSRVCQISDPERNYHCFYQLCAAPPEDVKKYKLGDPKEFHYLNQSNCFELDGVDDAEEYLAT 241 (674)
T ss_pred ECCCCcEEEEEEEEEecccCceeecCCCCCchhHHHHHHcCCHHHHHHcCCCChHhCccccCCCCccccccchHHHHHHH
Confidence 99999999999999999999999999999999999999999889999999999999999999999999999999999999
Q ss_pred HhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeCCc
Q 000617 161 RRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPEE 240 (1388)
Q Consensus 161 ~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~e 240 (1388)
++||+.|||+++++..||+|||||||||||+|....+.|++.+.+..+...+..||.||||++++|.++|+++++.++++
T Consensus 242 ~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~L~~~~~~~~~e 321 (674)
T cd01384 242 RRAMDVVGISEEEQDAIFRVVAAILHLGNIEFAKGEEIDSSVLKDEKSEFHLKTAAELLMCDEKALEDALCKRVMVTPEE 321 (674)
T ss_pred HHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCCCCcccccCcccHHHHHHHHHHhCCCHHHHHHHhcccEEEeCCc
Confidence 99999999999999999999999999999999876555666666555567899999999999999999999999999999
Q ss_pred eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHHHHH
Q 000617 241 VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHF 320 (1388)
Q Consensus 241 ~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~f 320 (1388)
.+++|+++++|..+||+|||+||++||+|||.+||.+|+++.....+||||||||||+|+.|||||||||||||+||++|
T Consensus 322 ~i~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~~f 401 (674)
T cd01384 322 VITKPLDPDSAELSRDALAKTIYSRLFDWLVNKINSSIGQDPDSKSLIGVLDIYGFESFKTNSFEQFCINLTNEKLQQHF 401 (674)
T ss_pred eEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecccccccCcCCHHHHHhhhhHHHHHHHH
Confidence 99999999999999999999999999999999999999987777899999999999999999999999999999999999
Q ss_pred HHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCCCCCC
Q 000617 321 NQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKLSR 400 (1388)
Q Consensus 321 ~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~~~~ 400 (1388)
++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++.+++|++|.+|+..+
T Consensus 402 ~~~if~~eq~eY~~EgI~~~~i~~~DN~~~ldLie~~~~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~~~~~~~ 481 (674)
T cd01384 402 NQHVFKMEQEEYTKEEIDWSYIEFVDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFAQKLYQTFKDHKRFEKPKLSR 481 (674)
T ss_pred HHHHHHHHHHHHHhcCCCCCcccCCChHHHHHHHhcCCccHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCCCCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHHHHHHcc
Q 000617 401 TDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMETLNA 480 (1388)
Q Consensus 401 ~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L~~~l~~ 480 (1388)
..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+..+..+.+..+++||+++||.||+.||++|++
T Consensus 482 ~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~k~~tv~~~fk~~L~~L~~~L~~ 561 (674)
T cd01384 482 TAFTIDHYAGDVTYQTDQFLDKNKDYVVAEHQALLNASNCSFVAGLFPPLPEETSKSSKFSSIGSRFKQQLQSLMETLST 561 (674)
T ss_pred CeeEEEEecceeeecCCCHHHhcCCcccHHHHHHHHhCchHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999876655555567899999999999999999999
Q ss_pred cCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccccCCCchHHHHHHHH
Q 000617 481 TAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMIL 560 (1388)
Q Consensus 481 t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~ll 560 (1388)
|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++.......|++..|+.||
T Consensus 562 t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~~~~~~il 641 (674)
T cd01384 562 TEPHYIRCIKPNNVLKPGIFENENVLQQLRCGGVLEAIRISCAGYPTRRTFDEFLDRFGILAPEVLKGSSDDKAACKKIL 641 (674)
T ss_pred cCCeEEEEeCCCcccCCCccCHHHHHHHHHHcchHHHHHHHhcCCCccccHHHHHHHHHHhCcccccCCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999886655668899999999
Q ss_pred hhcCCCCceeccceeeecchhhHHHHHHHHhhh
Q 000617 561 DKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL 593 (1388)
Q Consensus 561 ~~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l 593 (1388)
..++.++|++|+||||||+|+++.||.+|.+.+
T Consensus 642 ~~~~~~~~~~GktkVFlr~~~~~~LE~~R~~~~ 674 (674)
T cd01384 642 DKMGLKGYQIGKTKVFLRAGQMAELDARRTEVL 674 (674)
T ss_pred HhCCCCCEEecCeeEEEcCCHHHHHHHHHHhcC
Confidence 999999999999999999999999999998754
No 5
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=3.6e-155 Score=1331.99 Aligned_cols=648 Identities=39% Similarity=0.671 Sum_probs=597.2
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCC-CCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGV-EGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 79 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~-~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l 79 (1388)
|.+.++||||+|||||||||||.+|+||+|+|.+.+.+.. +...|.+.++.|||||||||||||.||||||||||||.|
T Consensus 88 lk~r~rDtcI~ISGESGAGKTEASK~iMqYiAAvtn~~qq~eierVKn~LLqSN~VLEAFGNAKT~RNdNSSRFGKYMDI 167 (1001)
T KOG0164|consen 88 LKRRSRDTCILISGESGAGKTEASKIIMQYIAAVTNASQQGEIERVKNVLLQSNCVLEAFGNAKTNRNDNSSRFGKYMDI 167 (1001)
T ss_pred HHhccCCeEEEEecCCCCCccHHHHHHHHHHHHhcCccccchHHHHHHHHHhcchHHHHhcccccccCCchhhhhcceee
Confidence 6778999999999999999999999999999999765432 235678899999999999999999999999999999999
Q ss_pred EEcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCC-CCCccccccCCCccccCCCCcHHHH
Q 000617 80 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLG-SPKSFHYLNQSNCYELDGVSDAHEY 157 (1388)
Q Consensus 80 ~f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~-~~~~~~yl~~~~~~~~~~~~d~~~f 157 (1388)
.||-+|..+|++|..|||||||||.|.+|||||||||||+. +++.++..|+|. ++..|+||++| +..+.+++|+.+|
T Consensus 168 nFDfKGdPvGG~I~nYLLEKSRVv~Q~~GERNFH~FYQLL~G~~e~~Lr~l~Ler~~~~Y~ylnqg-~~~v~sinD~~df 246 (1001)
T KOG0164|consen 168 NFDFKGDPVGGHITNYLLEKSRVVKQQPGERNFHIFYQLLRGGEEQLLRQLGLERNPQSYNYLNQG-SAKVSSINDASDF 246 (1001)
T ss_pred eccccCCcccchHhHHHHhhhhhhhcCcCcchHHHHHHHHcCCcHHHHHHhccccCcchhhhhhhh-hhhhcccccHHHH
Confidence 99999999999999999999999999999999999999999 888999999995 89999999999 7888999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe
Q 000617 158 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 237 (1388)
Q Consensus 158 ~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 237 (1388)
..++.||.++||+++++..+|+|+|||||||||+|.++. |++.+... ..+..+|+||++.+++|+++||+|++.+
T Consensus 247 k~V~~Am~vIgFs~eEVe~v~~iiAavLhLGNv~f~~~e--d~~~~~~~---~~l~~~aell~v~~del~~aL~~Rtvaa 321 (1001)
T KOG0164|consen 247 KAVQKAMRVIGFSEEEVESVLSIIAAVLHLGNVEFADNE--DSSGIVNG---AQLKYIAELLSVTGDELERALTSRTVAA 321 (1001)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceEEeecC--cccccchh---HHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999998754 45554433 4799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-----CCCCeEEEeecccCccCCCCCChHHHHHHhh
Q 000617 238 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-----PDSKSIIGVLDIYGFESFKCNSFEQFCINFT 312 (1388)
Q Consensus 238 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-----~~~~~~IgiLDi~GFe~f~~NsfeqlciNya 312 (1388)
++|.+.+++++.||.++||||||++|+|||+|||.+||++|... ......||||||||||+|..||||||||||+
T Consensus 322 ~~e~v~k~hn~~qA~YaRDAlAKaiY~RlF~Wiv~rIn~~i~~~~~~~~~~~~~Vigvldiygfeif~~NSFEQfcINYC 401 (1001)
T KOG0164|consen 322 GGEIVLKQHNVEQASYARDALAKAIYSRLFTWIVNRINRSIEVKGVITLRKGNTVIGVLDIYGFEIFQDNSFEQFCINYC 401 (1001)
T ss_pred ccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhhhhheecccccccccCceEEEEEEeeeEEeecCCcHHHHHHHHH
Confidence 99999999999999999999999999999999999999999642 2235889999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCC-CChHhHHHHHHHHhhcCC
Q 000617 313 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPK-STHETFSQKLCQTFAKNN 391 (1388)
Q Consensus 313 nEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~-~~d~~~~~kl~~~~~~~~ 391 (1388)
||||||.|++-++|.|||||.+|||+|+.|+|.+|.-++||+|.+..|||++|||||+.|+ -||.+|+++|.+.+++|+
T Consensus 402 NEKLQQlFIel~LKqEQEEY~rEgI~W~~i~YFnN~iIcdLvE~~~~GIlailDe~Cl~~G~vtD~tfL~~l~~~~~~H~ 481 (1001)
T KOG0164|consen 402 NEKLQQLFIELVLKQEQEEYEREGIEWTHIDYFNNKIICDLVEQPHKGILAILDEACLRPGTVTDETFLEKLNQKLKKHP 481 (1001)
T ss_pred HHHHHHHHHHHHHHhhHHHHHhcCCCceehhhcCCceeeehhccCccchhhhhhHHhcCCCccchHHHHHHHHHHhhhCC
Confidence 9999999999999999999999999999999999999999999999999999999999997 699999999999999999
Q ss_pred CCCCCC-------CCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCC-CCCcch
Q 000617 392 RFSKPK-------LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKS-SKFSSI 463 (1388)
Q Consensus 392 ~~~kp~-------~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~-~~~~tv 463 (1388)
+|.... ++..+|.|.||||+|+|++.||++||+|.+..++-.+|.+|++++++.||+++..+...- .+.+|+
T Consensus 482 Hy~sr~~~~~dksl~~~~Fri~HYAG~V~YsV~gFidKN~D~Lf~dlk~~m~~s~~~~l~~~fpeG~~~~~~~tkRP~Ta 561 (1001)
T KOG0164|consen 482 HYTSRKLKQTDKSLGFSDFRITHYAGDVTYSVEGFIDKNNDLLFQDLKRLMYNSKNPLLKSLFPEGNPDIAEVTKRPPTA 561 (1001)
T ss_pred cchhhhccccccccCccceeEEEeccceEEEEEeeeccCccHHHHHHHHHHHhcCCchHHHhCCCCChhHHhhhcCCCcH
Confidence 996432 244699999999999999999999999999999999999999999999999764332222 366899
Q ss_pred hHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccc
Q 000617 464 GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 543 (1388)
Q Consensus 464 ~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 543 (1388)
|++||.|+..||+.|.+-+|+||||||||+.+.|+.||...|.+|.++.|+||.+|++++||.+|.+|+.|+.||+++++
T Consensus 562 gt~Fk~Sm~~Lv~nL~sKeP~YvRcikPNe~k~~~~fd~e~~~hqv~ylGLleNvrVrrAgfahRq~Y~~FL~RYKmi~~ 641 (1001)
T KOG0164|consen 562 GTLFKNSMAALVKNLASKEPNYVRCIKPNEHKQPGQFDEERVRHQVRYLGLLENVRVRRAGFAHRQPYERFLLRYKMICE 641 (1001)
T ss_pred HHHHHHHHHHHHHHHhhcCCCeEEeeccccccCccccchhhhHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHhhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccC--CCchHHHHHHHHhhcCC-CCceeccceeeecchh-hHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhhhh
Q 000617 544 EVLEG--NYDDQVACQMILDKKGL-KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNA 619 (1388)
Q Consensus 544 ~~~~~--~~d~~~~~~~ll~~~~~-~~~~iGktkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~a 619 (1388)
..+++ ..++++.|..|++..+. .++.+|+||||+|.+. +-.||..|.+.+...++.||+.||||++|.+|++|+++
T Consensus 642 ~TWPn~~~g~dkd~v~vL~e~~g~~~d~a~G~TKIFIRsPrTLF~lEe~r~~~l~~lvtllQK~~RG~~~R~ry~rmka~ 721 (1001)
T KOG0164|consen 642 STWPNWRGGSDKDGVKVLLEHLGLAGDVAFGRTKIFIRSPRTLFALEEQRAERLPSLVTLLQKAWRGWLARQRYRRMKAS 721 (1001)
T ss_pred ccCCCCCCCCchhHHHHHHHHhccchhhhcCceeEEEecchhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 75432 34679999999999987 4899999999999865 57899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhHHh
Q 000617 620 AVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTV 664 (1388)
Q Consensus 620 ai~iQa~~Rg~laR~~~~~~r~~~Aai~IQ~~~Rg~~~R~~y~~~ 664 (1388)
++.|+ |||.+..+ .++..||+.+||+..++.|.+-
T Consensus 722 ~~ii~-wyR~~K~k---------s~v~el~~~~rg~k~~r~ygk~ 756 (1001)
T KOG0164|consen 722 ATIIR-WYRRYKLK---------SYVQELQRRFRGAKQMRDYGKS 756 (1001)
T ss_pred HHHHH-HHHHHHHH---------HHHHHHHHHHHhhhhccccCCC
Confidence 99999 88854333 5667899999999999998753
No 6
>cd01380 MYSc_type_V Myosin motor domain, type V myosins. Myosins V transport a variety of intracellular cargo processively along actin filaments, such as membraneous organelles and mRNA. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an act
Probab=100.00 E-value=2.2e-155 Score=1455.68 Aligned_cols=585 Identities=51% Similarity=0.834 Sum_probs=547.1
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCC--CCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG--VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVE 78 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~--~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~ 78 (1388)
|.++++||||||||||||||||++|+||+|||.++++.. .....|+++|+++||||||||||||++||||||||||++
T Consensus 80 m~~~~~~QsIiiSGESGaGKTes~K~i~~yLa~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~ 159 (691)
T cd01380 80 MTRDEKNQSIIVSGESGAGKTVSAKYIMRYFASVGGSDSREVSETQVEEKVLASNPIMEAFGNAKTTRNDNSSRFGKYIQ 159 (691)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHHhcCCCcccccccCHHHHHHHHHHHHHHhhcCCCCCCCCccccceEEE
Confidence 678899999999999999999999999999999987542 234689999999999999999999999999999999999
Q ss_pred EEEcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHH
Q 000617 79 IQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEY 157 (1388)
Q Consensus 79 l~f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f 157 (1388)
|+||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|
T Consensus 160 l~f~~~g~i~Ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yl~~~~~~~~~~~~d~~~f 239 (691)
T cd01380 160 ILFDKRGRIIGANMRTYLLEKSRVVFQAPGERNYHIFYQLCAGAPSQELKELHLGHADKFNYLNQGGAPTIEGVDDAEDF 239 (691)
T ss_pred EEECCCCCEEEEEEEEeeccccceeecCCCCChhHHHHHHHhCCCHHHHHHhCCCCHHHCccccCCCCccCCCCChHHHH
Confidence 999999999999999999999999999999999999999999 7889999999999999999999999999999999999
Q ss_pred HHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe
Q 000617 158 LATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 237 (1388)
Q Consensus 158 ~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 237 (1388)
.+|+.||+.|||+++++..||+|||||||||||+|.+..+ +.+.+.. +...++.+|+||||++++|.++|++|++.+
T Consensus 240 ~~~~~al~~lg~s~~e~~~I~~iLaaILhLGni~F~~~~~-~~~~~~~--~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 316 (691)
T cd01380 240 NATVQALTLLGISEEQQMDIFKLLAALLHLGNIEIEATRN-DSSSISP--KDENLQIACELLGVDASDLRKWLVKRQIVT 316 (691)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHhccceeeeccCC-ccceecC--ChHHHHHHHHHhCCCHHHHHHHHHhCEEEE
Confidence 9999999999999999999999999999999999987543 3322221 234699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC---CCCCeEEEeecccCccCCCCCChHHHHHHhhhh
Q 000617 238 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD---PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 314 (1388)
Q Consensus 238 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~---~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanE 314 (1388)
++|.+++|+++++|..+||+|||+||++||+|||.+||.+|++. .....+||||||||||+|+.|||||||||||||
T Consensus 317 ~~e~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNE 396 (691)
T cd01380 317 RSEKIVKPLTKEQAIVARDALAKHIYSKLFDWIVDVINKSLNTGEVKKKQTSFIGVLDIYGFETFEKNSFEQFCINYANE 396 (691)
T ss_pred CCeeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcCcccCCccceEEEEecCcccccCCCCHHHHhhhhhhH
Confidence 99999999999999999999999999999999999999999876 456789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhh--cCCC
Q 000617 315 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFA--KNNR 392 (1388)
Q Consensus 315 kLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~--~~~~ 392 (1388)
|||++|++|+|+.||++|.+|||+|++|+|.||++|||||+++ .|||++|||||++|+|||++|++||++.++ +|+.
T Consensus 397 kLQ~~f~~~iF~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~-~Gil~lLdee~~~p~~td~~f~~kl~~~~~~~~~~~ 475 (691)
T cd01380 397 KLQQQFNQHVFKLEQEEYLKEGIEWTFIDFYDNQPCIDLIESK-LGILSLLDEECRLPKGSDESWAQKLYNKLPKKKNPH 475 (691)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCccccCCCCHHHHHHHhCC-CchHHHhHHhhcCCCCChHHHHHHHHHHhcccCCCC
Confidence 9999999999999999999999999999999999999999975 699999999999999999999999999998 8999
Q ss_pred CCCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccc-----------------c
Q 000617 393 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------------S 455 (1388)
Q Consensus 393 ~~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------------~ 455 (1388)
|.+|+.+...|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||+...... .
T Consensus 476 ~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~ 555 (691)
T cd01380 476 FEKPRFGQTSFTVKHFADDVEYDVDGFLEKNRDTVSDEHLDVLKASKNPFLKEVLDAAELASSSSSSAKSKPAAKRPPKR 555 (691)
T ss_pred ccCCCCCCCeeEEEEccCCcccccccHHHhccccccHHHHHHHHhCccHHHHHHhhhhcccccccccccccccccccccc
Confidence 99999888999999999999999999999999999999999999999999999997532110 0
Q ss_pred CCCCCcchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHH
Q 000617 456 KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFV 535 (1388)
Q Consensus 456 ~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~ 535 (1388)
+..+.+||+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+
T Consensus 556 ~~~~~~tv~~~fk~qL~~L~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~ 635 (691)
T cd01380 556 AKQHKPTVGSQFKSSLIELMSTLNSTNPHYIRCIKPNDEKKPFKFEPKRVLQQLRACGVLETIRISAAGFPSRWTYEEFA 635 (691)
T ss_pred cccCCCcHHHHHHHHHHHHHHHHhccCCeEEEEeCCCcccCcCccCHHHHHHHHHHhchHHHHHHHhccCCccccHHHHH
Confidence 12356899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccccccccCCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 536 NRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 536 ~ry~~l~~~~~~~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
.||++|++.......|++..|+.||..++. .+|++|+||||||+++++.||++|
T Consensus 636 ~ry~~L~~~~~~~~~~~k~~~~~iL~~~~~~~~~~~~G~tkVFlk~~~~~~LE~~R 691 (691)
T cd01380 636 QRYRVLVPSKELWKSDPKQLCENILTKVIEDEDKYQFGKTKIFFRAGQVAFLEKLR 691 (691)
T ss_pred HHHHHhCccccccCCCHHHHHHHHHHHhCCCcccEEecCceEEECcCHHHHHhhcC
Confidence 999999998654456889999999999874 589999999999999999999876
No 7
>cd01377 MYSc_type_II Myosin motor domain, type II myosins. Myosin II mediates cortical contraction in cell motility, and is the motor in smooth and skeletal muscle. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydro
Probab=100.00 E-value=7.3e-155 Score=1451.35 Aligned_cols=585 Identities=45% Similarity=0.748 Sum_probs=544.7
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCC------CCCccHHHHHHhhccHHHHhccCCCCcCCCCCccc
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG------VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFG 74 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~------~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfg 74 (1388)
|.++++||||||||||||||||++|+||+|||.+++... .....|+++|+++||||||||||||++||||||||
T Consensus 85 m~~~~~~QsIiiSGESGAGKTes~K~il~yLa~~~~~~~~~~~~~~~~~~i~~~il~snpiLEAFGNAkT~rN~NSSRFG 164 (693)
T cd01377 85 MLQDRENQSILITGESGAGKTENTKKVIQYLASVAASSKKKKQSGKGQGTLEDQILQANPILEAFGNAKTVRNDNSSRFG 164 (693)
T ss_pred HHhcCCCceEEEEcCCCCCchHHHHHHHHHHHhhcCCCCcccccccccccHHHHHHHHHHHHHHhhccccCCCCCccccc
Confidence 678899999999999999999999999999999986532 12357999999999999999999999999999999
Q ss_pred ceEEEEEcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCC-CccccccCCCccccCCCC
Q 000617 75 KFVEIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSP-KSFHYLNQSNCYELDGVS 152 (1388)
Q Consensus 75 k~~~l~f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~-~~~~yl~~~~~~~~~~~~ 152 (1388)
||++|+||.+|+|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++ .+|+||+++++ .++++|
T Consensus 165 K~i~l~f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~l~L~~~~~~y~yL~~~~~-~~~~~~ 243 (693)
T cd01377 165 KFIRIHFGNTGKIAGADIETYLLEKSRVVFQASGERNYHIFYQLLSGADPELKSMLLLTGNPNDYRYLSQGEL-TIPGVD 243 (693)
T ss_pred eeEEEEECCCCCEEEEEEEEEecccCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCCchhcCeeeCCCCc-cCCCCc
Confidence 9999999999999999999999999999999999999999999999 78999999999876 89999999876 468999
Q ss_pred cHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhh
Q 000617 153 DAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIK 232 (1388)
Q Consensus 153 d~~~f~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~ 232 (1388)
|+++|.+|+.||+.|||+++++..||+|||||||||||+|.+..+.+.+.+.+. ..+..||.||||++++|.++||+
T Consensus 244 d~~~f~~~~~al~~lG~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~ 320 (693)
T cd01377 244 DAEEFKLTDEAFDILGFSDEEKNSIFKIVAAILHLGNIKFKQRQREEQAELDGT---EEADKAAHLLGVNSADLLKALLH 320 (693)
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCCccccCCh---HHHHHHHHHhCCCHHHHHHHhcc
Confidence 999999999999999999999999999999999999999987544444555443 47999999999999999999999
Q ss_pred ceEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhh
Q 000617 233 RVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFT 312 (1388)
Q Consensus 233 ~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNya 312 (1388)
+++.++++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.|||||||||||
T Consensus 321 ~~~~~~~e~i~~~~~~~~A~~~rDalak~lY~~LF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINya 400 (693)
T cd01377 321 PRIKVGREWVTKGQNVEQVSFSVGALAKALYERLFLWLVKRINKTLDTKQQRAYFIGVLDIAGFEIFDFNSFEQLCINYT 400 (693)
T ss_pred eEEEECCeeEeeCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCceEEEEecccccccCCCCHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999877778999999999999999999999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhcCCcccccccc-ChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCC
Q 000617 313 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFI-DNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNN 391 (1388)
Q Consensus 313 nEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~-dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~ 391 (1388)
|||||++|++|||+.||++|.+|||+|+.|+|. ||++|||||+++|.|||++|||||++|+|||++|++||+..+.+++
T Consensus 401 NEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~~~~dn~~~ldLie~~~~Gil~lLdee~~~~~~tD~~~~~kl~~~~~~~~ 480 (693)
T cd01377 401 NEKLQQFFNHHMFVLEQEEYQREGIEWTFIDFGLDLQPTIDLIEKNPMGILSLLDEECVFPKATDKTFVEKLYDNHLGKS 480 (693)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhCCCCcccccCCCcHHHHHHHhcCCCchHhhhhHHhcCCCCCHHHHHHHHHHHhcCCC
Confidence 999999999999999999999999999999994 9999999999999999999999999999999999999999999988
Q ss_pred CC--CCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccc----------cCCCC
Q 000617 392 RF--SKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES----------SKSSK 459 (1388)
Q Consensus 392 ~~--~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~----------~~~~~ 459 (1388)
.| .+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.||+...... .+.++
T Consensus 481 ~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~ 560 (693)
T cd01377 481 KFKKPKKGKAKAHFSLVHYAGTVDYNIDGWLEKNKDPLNDNVVGLLKKSSDKLVAELFKDYAEASGDGGGGGGKKKKGGS 560 (693)
T ss_pred cccccCCCCCCCcEEEEeeceeEeeccccHHHhccccccHHHHHHHHhCchHHHHHHhhhhcccccccccccCCCCcCCc
Confidence 87 4455567899999999999999999999999999999999999999999999997643211 11234
Q ss_pred CcchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhc
Q 000617 460 FSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFG 539 (1388)
Q Consensus 460 ~~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~ 539 (1388)
++||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++||||+||||+|||+++|||+|++|.+|+.||+
T Consensus 561 ~~tv~~~F~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlEtvrirr~Gyp~R~~f~~F~~rY~ 640 (693)
T cd01377 561 FRTVSQLYKEQLNKLMTTLRSTNPHFVRCIIPNEEKKPGKLDAHLVLDQLRCNGVLEGIRICRKGFPNRILYAEFRQRYE 640 (693)
T ss_pred cccHHHHHHHHHHHHHHHHhccCCeEEEEeCcCccCCCCccCHHHHHHHHHhcchHHHHHHHHcCCCccccHHHHHHHHH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccc-cCCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 540 ILAPEVL-EGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 540 ~l~~~~~-~~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
+|++... ....|.|+.|+.||..+++ ++|++|+||||||++++..||.+|
T Consensus 641 ~L~~~~~~~~~~d~k~~~~~iL~~~~~~~~~~~~G~TKVFlk~~~~~~LE~~R 693 (693)
T cd01377 641 ILAPNAIPKGFMDSKKASEKILKSLELDPEQYRFGHTKVFFRAGVLAHLEEMR 693 (693)
T ss_pred HhCcccccccCCCHHHHHHHHHHhcCCCcccEEecCCeEeECccHHHHHhhcC
Confidence 9998753 3346889999999999876 489999999999999999999876
No 8
>cd01381 MYSc_type_VII Myosin motor domain, type VII myosins. Myosins in this group have been associated with functions in sensory systems such as vision and hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydr
Probab=100.00 E-value=5.5e-155 Score=1445.11 Aligned_cols=582 Identities=45% Similarity=0.740 Sum_probs=545.9
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.++++||||||||||||||||++|++|+|||.+++.. ..++++|++|||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTes~K~i~~yLa~~s~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 155 (671)
T cd01381 80 MQREKKNQCIIISGESGAGKTESTKLILQYLAAISGKH----SWIEQQILEANPILEAFGNAKTIRNDNSSRFGKYIDIH 155 (671)
T ss_pred HHHcCCCceEEEEcCCCCCeehHHHHHHHHHHHhcCCC----CcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 67889999999999999999999999999999997642 46999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|..++++||+++|.+
T Consensus 156 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dD~~~f~~ 235 (671)
T cd01381 156 FNKRGAIEGAKIEQYLLEKSRIVRQARDERNYHIFYCMLAGLSTDEKERLKLGEASDYHYLAQGGCITCEGRDDAKDFAD 235 (671)
T ss_pred ECCCCcEEEEEEEEEeccCCceeecCCCCCcHHHHHHHHcCCCHHHHHHcCCCChhhceeecCCCCccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc--CcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 237 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 237 (1388)
|+.||+.|||+++++..||+|||||||||||+|..... .+.+.+.+ ...+..+|.||||++++|.++||+|.+.+
T Consensus 236 ~~~al~~lG~~~~e~~~i~~ilaaILhLGni~F~~~~~~~~~~~~i~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 312 (671)
T cd01381 236 IRSAMKVLMFTDQEIWEIFKLLAAILHIGNLRFEATEVDNLAACEVDD---TPNLQRVAQLLGVPIQDLMDALTSRTIFT 312 (671)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeeccCCCCCceeeCC---hHHHHHHHHHhCCCHHHHhhhhceEEEEe
Confidence 99999999999999999999999999999999986532 23444544 35799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCCeEEEeecccCccCCCCCChHHHHHHhhhhHH
Q 000617 238 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKL 316 (1388)
Q Consensus 238 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkL 316 (1388)
+++++++|+++++|..+||||||+||++||+|||.+||.+|.++ .....+||||||||||+|+.|||||||||||||||
T Consensus 313 ~~e~i~~~~~~~qA~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDIfGFE~f~~NsfEQLcINy~NEkL 392 (671)
T cd01381 313 RGETVVTPLSREQAVDVRDAFVKGIYGRLFVWIVRKINAAIYKPVQQSRNSIGVLDIFGFENFDVNSFEQLCINFANENL 392 (671)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccccceEEEEecCCcccCCCCCHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999865 45678999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCC
Q 000617 317 QQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKP 396 (1388)
Q Consensus 317 q~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp 396 (1388)
|++|++|+|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+|+|++|++||++.+++|+.|.+|
T Consensus 393 Q~~f~~~vf~~eq~eY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLDee~~~p~~td~~f~~kl~~~~~~~~~~~~~ 472 (671)
T cd01381 393 QQFFVQHIFKLEQEEYNLEHINWQHIEFVDNQDALDLIAIKPLNIMSLIDEESKFPKGTDQTMLEKLHSQHGLHSNYLKP 472 (671)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCccCccCcHHHHHHHhcCCCCcceechHhhcCCCCCHHHHHHHHHHHhcCCCCcccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999988
Q ss_pred CC-CCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccc-cCCCCCcchhHHHHHHHHHH
Q 000617 397 KL-SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-SKSSKFSSIGSRFKLQLQSL 474 (1388)
Q Consensus 397 ~~-~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-~~~~~~~tv~~~f~~sl~~L 474 (1388)
+. ....|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.+|+...... ....+.+||+++|+.||+.|
T Consensus 473 ~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~k~~tv~~~fk~qL~~L 552 (671)
T cd01381 473 KSTQETQFGINHFAGVVFYDTRGFLEKNRDTFSGDLSQLVQSSKNKFLKQIFQADVEMGAETRKKKPTLSSQFRRSLDLL 552 (671)
T ss_pred CCCCCCceEEEEecceEeeccCCHHHhccchhhHHHHHHHHhChHHHHHHHhcccccccccccccCCcHHHHHHHHHHHH
Confidence 75 46799999999999999999999999999999999999999999999998754221 22336689999999999999
Q ss_pred HHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccccC--CCch
Q 000617 475 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG--NYDD 552 (1388)
Q Consensus 475 ~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~--~~d~ 552 (1388)
|++|++|+||||||||||+.++|+.||...|++||||+||||++||+++|||+|++|.+|+.||++|++..... ..|.
T Consensus 553 ~~~L~~t~phfIRCIKPN~~k~~~~fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~rY~~L~~~~~~~~~~~~~ 632 (671)
T cd01381 553 MRTLSSCQPFFIRCIKPNEYKEPMVFDRELCVRQLRYSGMMETIRIRRAGYPIRHTFREFVERYRVLVPGVKPAYKQDCL 632 (671)
T ss_pred HHHHhcCCCeEEEEeCcchhhccCccChHHHHHHHHhcchHHHHHHHHcCcCceecHHHHHHHHHHhCcccccccccccH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999875432 3477
Q ss_pred HHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 553 QVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 553 ~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
+..|+.+++.+.+ ++|++|+||||||++++..||+.|
T Consensus 633 ~~~~~~il~~~~~~~~~~~~G~TkVFlr~~~~~~LE~~r 671 (671)
T cd01381 633 AGLAQRICEAVLLADDDWQLGKTKVFLKDHHDLLLEQER 671 (671)
T ss_pred HHHHHHHHHHcCCCcccEEeccceEEECcCHHHHHhhcC
Confidence 8899999998765 589999999999999999999865
No 9
>cd01383 MYSc_type_VIII Myosin motor domain, plant-specific type VIII myosins, a subgroup which has been associated with endocytosis, cytokinesis, cell-to-cell coupling and gating at plasmodesmata. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates f
Probab=100.00 E-value=6.1e-154 Score=1434.26 Aligned_cols=577 Identities=48% Similarity=0.797 Sum_probs=536.9
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|..+++||||||||||||||||++|+||+|||.++++ ..++++|+++||||||||||||++||||||||||++|+
T Consensus 86 m~~~~~~QsIiisGESGaGKTe~~K~i~~yLa~~~~~-----~~i~~~il~snpiLEaFGNAkT~~N~NSSRFGK~~~l~ 160 (677)
T cd01383 86 MMRDEVNQSIIISGESGAGKTETAKIAMQYLASLGGG-----SGIEYEILQTNPILEAFGNAKTSRNDNSSRFGKLIEIH 160 (677)
T ss_pred HHHcCCCceEEEecCCCCCcchHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHHhhccccCCCCCcCccceeEEEE
Confidence 6778999999999999999999999999999999753 26899999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||++++|+.++++||+.+|.+
T Consensus 161 f~~~g~i~ga~i~~yLLEksRv~~q~~gErNfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 240 (677)
T cd01383 161 FSETGKISGAKIQTFLLEKSRVVQCARGERSYHIFYQLCAGAPPALKEKLNLKSASEYKYLKQSCCYSINGVDDAQRFHT 240 (677)
T ss_pred ECCCCcEEEEEEEEEecCCCceeccCCCCchhHHHHHHHcCCCHHHHHHhCCCCHHHCceecCCCcccCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeCC
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 239 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 239 (1388)
|+.||+.|||+++++..||+|||||||||||+|....+.+.+.+.+ ...+..+|.||||++++|.++||++.+.+++
T Consensus 241 ~~~al~~lG~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 317 (677)
T cd01383 241 LVEALDIVHISKEDQENVFAMLAAVLWLGNVSFTVIDNENHVEPVA---DEALSTAAKLIGCNIEDLMLALSTRKMHVNN 317 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEecCCCcccccCC---hHHHHHHHHHhCCCHHHHHHHhhhcEEEeCC
Confidence 9999999999999999999999999999999997644333233332 3469999999999999999999999999999
Q ss_pred ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCC-CCeEEEeecccCccCCCCCChHHHHHHhhhhHHHH
Q 000617 240 EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-SKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 318 (1388)
Q Consensus 240 e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~ 318 (1388)
+.+++|+++++|..+||+|||+||++||+|||.+||.+|++... ...+||||||||||+|+.||||||||||||||||+
T Consensus 318 e~~~~~~~~~qa~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgiLDI~GFE~f~~NsfEQLcINyaNEkLQ~ 397 (677)
T cd01383 318 DNIVQKLTLQQAIDARDALAKSIYASLFDWLVEQINKSLEVGKRRTGRSISILDIYGFESFDKNSFEQFCINYANERLQQ 397 (677)
T ss_pred ceEeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccccceEEEeeccccccCCCCCHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999987543 46799999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCCCC
Q 000617 319 HFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPKL 398 (1388)
Q Consensus 319 ~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~~ 398 (1388)
+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|++||++|++||++++++|+.|.+|+
T Consensus 398 ~f~~~vF~~EqeeY~~EgI~~~~i~f~dN~~~ldLie~kp~Gil~lLdee~~~p~~tD~~f~~kl~~~~~~~~~~~~~~- 476 (677)
T cd01383 398 HFNRHLFKLEQEEYEEDGIDWTKVEFEDNQECLDLFEKKPLGLLSLLDEESTFPNATDLTFANKLKQHLKTNSCFRGER- 476 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHHcCCCCCHHHHHHHHHHHhCCCCCCCCCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred CCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCC-----cc------cccCCCCCcchhHHH
Q 000617 399 SRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPL-----PE------ESSKSSKFSSIGSRF 467 (1388)
Q Consensus 399 ~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~-----~~------~~~~~~~~~tv~~~f 467 (1388)
+..|+|+||||+|+|+++||++||+|.++++++++|++|+++++. +|... +. ...+..+.+||+++|
T Consensus 477 -~~~F~I~HyAG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~~~~~~-~f~~~~~~~s~~~~~~~~~~~~~~~~~tv~~~f 554 (677)
T cd01383 477 -GGAFTVRHYAGEVTYDTTGFLEKNRDLLHSDSIQLLSSCKCQLPQ-LFASSMLIQSPVVGPLYVASAADSQKLSVGTKF 554 (677)
T ss_pred -CCceEEEEeccceeecCCChHHhccccccHHHHHHHHhCchHHHH-HHHhhhhccccccccccccccccccCcchHHHH
Confidence 578999999999999999999999999999999999999999876 45321 10 011123568999999
Q ss_pred HHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccccccc
Q 000617 468 KLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE 547 (1388)
Q Consensus 468 ~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~ 547 (1388)
+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++....
T Consensus 555 k~qL~~L~~~L~~t~phfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~ 634 (677)
T cd01383 555 KGQLFKLMQQLENTTPHFIRCIKPNNKQLPGIYEQGLVLQQLRCCGVLEVVRISRSGYPTRMTHQEFARRYGFLLLENIA 634 (677)
T ss_pred HHHHHHHHHHHhCCCCeEEEEECcccccCcCccchhhhHHHhhhccHHHHHHHHhcCCCccccHHHHHHHHHHhCccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987543
Q ss_pred CCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 548 GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 548 ~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
..|++..|+.||+.+++ ++|++|+||||||+|+++.||..|
T Consensus 635 -~~~~~~~~~~il~~~~~~~~~~~~GkTKVFlr~~~~~~LE~~r 677 (677)
T cd01383 635 -SQDPLSVSVAILQQFNILPEMYQVGYTKLFFRTGQIGALEDTR 677 (677)
T ss_pred -CCCHHHHHHHHHHhcCCCcccEEeccceEEecCcHHHHHhhcC
Confidence 35788999999999876 489999999999999999999875
No 10
>cd01378 MYSc_type_I Myosin motor domain, type I myosins. Myosin I generates movement at the leading edge in cell motility, and class I myosins have been implicated in phagocytosis and vesicle transport. Myosin I, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 picon
Probab=100.00 E-value=2e-153 Score=1434.38 Aligned_cols=583 Identities=44% Similarity=0.752 Sum_probs=547.2
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.++++||||||||||||||||++|++|+||+.++++.. ....++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~K~il~yL~~~~~~~~-~~~~i~~~i~~~npiLEAFGNAkT~~N~NSSRFgk~~~l~ 158 (674)
T cd01378 80 MKSENENQCVIISGESGAGKTEAAKKIMQYIAAVSGGGQ-KVERVKDVILQSNPLLEAFGNAKTLRNNNSSRFGKYMEIQ 158 (674)
T ss_pred HHHcCCCceEEEEcCCCCCcchHHHHHHHHHHhcCCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCcchhheeEEEE
Confidence 678899999999999999999999999999999986532 2356999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++++|+.++++||+++|.+
T Consensus 159 f~~~g~i~ga~i~~yLLEksRVv~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 238 (674)
T cd01378 159 FDFKGDPVGGKITNYLLEKSRVVSQNKGERNFHIFYQLLAGASEQLLRELGLQKPEYYYYLNQSQCYTVDGIDDKKDFKE 238 (674)
T ss_pred ECCCCCEeeEEEEEeecCCCceeecCCCCchhHHHHHHHcCCCHHHHHHhCCCChhhCeeecCCCccCCCCccHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeCC
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTPE 239 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 239 (1388)
|++||+.|||+++++..||+|||||||||||+|....+ +.+.+.+ ...++.+|.||||++++|.++|++|++.+++
T Consensus 239 ~~~al~~lG~s~~e~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~~ 314 (674)
T cd01378 239 TQNAMKVIGFSEDEQDEIFRIVAAILHLGNVQFAENGD-GAAVISD---KDVLDFAAYLLGVDPSELEKALTSRTIETGG 314 (674)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEeccCC-CccccCC---hHHHHHHHHHcCCCHHHHHHHhcccEEEeCC
Confidence 99999999999999999999999999999999987543 2233433 3479999999999999999999999999998
Q ss_pred ----ceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCC-CCCCeEEEeecccCccCCCCCChHHHHHHhhhh
Q 000617 240 ----EVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQD-PDSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 314 (1388)
Q Consensus 240 ----e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~-~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanE 314 (1388)
|.+++|+++++|..+||+|||+||++||+|||.+||.+|.+. .....+||||||||||+|+.|||||||||||||
T Consensus 315 ~~~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~IN~~l~~~~~~~~~~IgILDIfGFE~f~~NsfEQLcINyaNE 394 (674)
T cd01378 315 GGRGEVYDVPLNVEQAAYTRDALAKAIYSRLFDWLVSRINKALQVKSPGKNKVIGVLDIYGFEIFQKNSFEQFCINYVNE 394 (674)
T ss_pred CCCceeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCcceEEEEecccccccccccHHHHHhHHHHH
Confidence 999999999999999999999999999999999999999876 556789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhc-CcccccccchhhhcCC-CCChHhHHHHHHHHhhcCCC
Q 000617 315 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEK-KPGGIIALLDEACMFP-KSTHETFSQKLCQTFAKNNR 392 (1388)
Q Consensus 315 kLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~-~~~Gil~lLdee~~~p-~~~d~~~~~kl~~~~~~~~~ 392 (1388)
|||++|++|+|+.||++|.+|||+|+.|+|.||++|||||++ +|.|||++|||||++| ++||++|++||++.+++|++
T Consensus 395 kLQ~~f~~~~F~~eq~~Y~~EgI~~~~i~f~DN~~~ldLie~~~~~Gil~lLdee~~~p~~~tD~~~~~kl~~~~~~~~~ 474 (674)
T cd01378 395 KLQQIFIELTLKAEQEEYVREGIKWTPIEYFNNKIVCDLIEGKRPPGIFSILDDVCATPHEGTDQTFLEKLNKKFSSHPH 474 (674)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCCcCcCChHHHHHHHhcCCCcchHHHHHHHHcCCCCCChHHHHHHHHHHhccCCC
Confidence 999999999999999999999999999999999999999999 8999999999999999 99999999999999999999
Q ss_pred CCCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHH
Q 000617 393 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQ 472 (1388)
Q Consensus 393 ~~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~ 472 (1388)
+.+|+..+..|+|+||||+|+|+++||++||+|.++++++++|++|++++|+.||+......+ ..+.+||+++||.||+
T Consensus 475 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNrD~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~-~~~~~tv~~~fk~qL~ 553 (674)
T cd01378 475 SDHFSSGSDEFRIKHYAGDVTYSVEGFCDKNKDTLFKDLIELMQSSSNPFLRSLFPEKSDADS-KKRPTTAGFKIKTSAN 553 (674)
T ss_pred CCCCCCCCCcEEEEEeceeeeecCcCHHHhhcchhhHHHHHHHHhCchHHHHHHhcccccccc-cCCCCcHHHHHHHHHH
Confidence 988888889999999999999999999999999999999999999999999999986433222 2356899999999999
Q ss_pred HHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccc-cCCCc
Q 000617 473 SLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EGNYD 551 (1388)
Q Consensus 473 ~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~~~d 551 (1388)
.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||++.|||+|++|.+|+.||++|++... ....|
T Consensus 554 ~Lm~~L~~t~phfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvLE~iri~r~Gyp~R~~~~~F~~rY~~L~~~~~~~~~~~ 633 (674)
T cd01378 554 ALVETLMKCTPHYIRCIKPNETKSPNDFDESRVLHQVKYLGLLENVRVRRAGFAYRQTFDKFLQRYKLLSPKTWPTWPGD 633 (674)
T ss_pred HHHHHHHccCCeEEEEECCCccCCchhcCHHHHHHHHHhcChHHHHHHHhcCCCccccHHHHHHHHHHhCcccccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999998743 23468
Q ss_pred hHHHHHHHHhhcCC--CCceeccceeeecch-hhHHHHHHH
Q 000617 552 DQVACQMILDKKGL--KGYQIGKTKVFLRAG-QMAELDARR 589 (1388)
Q Consensus 552 ~~~~~~~ll~~~~~--~~~~iGktkVFlr~~-~~~~Le~~r 589 (1388)
++++|+.||..+++ ++|++|+||||||+| +++.||.+|
T Consensus 634 ~k~~~~~iL~~~~~~~~~~~~GkTkVFlr~~~~l~~le~~R 674 (674)
T cd01378 634 AKSGVEVILKDLNIDPEEYQMGKTKIFIRNPETLFALEEMR 674 (674)
T ss_pred HHHHHHHHHHHcCCCcccEEecCceEEEeCchhHHHHHhcC
Confidence 99999999999876 489999999999998 688999875
No 11
>cd01385 MYSc_type_IX Myosin motor domain, type IX myosins. Myosin IX is a processive single-headed motor, which might play a role in signalling. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the hea
Probab=100.00 E-value=1.3e-152 Score=1428.05 Aligned_cols=583 Identities=40% Similarity=0.657 Sum_probs=542.1
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.++++||||||||||||||||++|+||+|||.+++... ....|+++|+++||||||||||||++|+||||||||++|+
T Consensus 88 m~~~~~~QsIiisGESGAGKTet~K~il~yL~~~s~~~~-~~~~i~~~i~~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 166 (692)
T cd01385 88 MLRKKVNQCIVISGESGSGKTESTNFLIHHLTALSQKGY-AGSGVEQTILSAGPVLEAFGNAKTAHNNNSSRFGKFIQVN 166 (692)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhccCCc-cCCcHHHHHHHHHHHHHHhhccccCCCCCccccceeEEEE
Confidence 678899999999999999999999999999999975422 2357999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++++++|.++.+|+||+++++...+++||+.+|.+
T Consensus 167 F~~~g~i~Ga~i~~yLLEksRV~~q~~gERNfHIFYqll~G~~~~~~~~~~l~~~~~y~yL~~~~~~~~~~~dd~~~f~~ 246 (692)
T cd01385 167 YRENGMVRGAVVEKYLLEKSRIVSQEKDERNYHVFYYLLLGASEEERKQEFLLKQPDYFYLNQHNLKIEDGEDEKHEFER 246 (692)
T ss_pred ECCCCCEEEEEEEEeecccceeeecCCCCchhHHHHHHHcCCCHHHHHHhcCCChhcCCeeCCCCCccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999888999999998887789999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc---CcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEE
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 236 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 236 (1388)
|+.||+.|||+++++..||+|||||||||||+|.+..+ .+++.+.+ ...+..+|.||||++++|.++||++++.
T Consensus 247 ~~~al~~lG~~~~~~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 323 (692)
T cd01385 247 LKQAMEMVGFLAATQKQIFAVLSAVLLLGNVTYKKRATYHRDESLEVGN---PEVVDLLSQLLKVKRETLMEALTKKRTV 323 (692)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecccCCCCCceecCC---HHHHHHHHHHhCCCHHHHHHHhccCeEE
Confidence 99999999999999999999999999999999986432 23444443 3579999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC---CCCeEEEeecccCccCCCC-CChHHHHHHhh
Q 000617 237 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP---DSKSIIGVLDIYGFESFKC-NSFEQFCINFT 312 (1388)
Q Consensus 237 ~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~---~~~~~IgiLDi~GFe~f~~-NsfeqlciNya 312 (1388)
+++|++++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|+. |||||||||||
T Consensus 324 ~~~e~i~~~~~~~qa~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~IgiLDI~GFE~f~~~NsfEQLcINya 403 (692)
T cd01385 324 TVNETLILPYSLSEAITARDAMAKCLYSALFDWIVLRINHALLNKDDVAVSGLSIGVLDIFGFEDFGRCNSFEQLCINYA 403 (692)
T ss_pred eCCCeEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccceEEEEEecCccccCCCCCCHHHHhhHHH
Confidence 9999999999999999999999999999999999999999998643 2467999999999999999 99999999999
Q ss_pred hhHHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCC
Q 000617 313 NEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNR 392 (1388)
Q Consensus 313 nEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~ 392 (1388)
|||||++|++|+|+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|++||++|++|+.+.+++++.
T Consensus 404 NEkLQ~~f~~~vf~~eq~~Y~~EgI~~~~i~f~dN~~~ldLie~k~~Gil~lLdee~~~p~~td~~~l~kl~~~~~~~~~ 483 (692)
T cd01385 404 NEQLQYYFNQHIFKLEQEEYQGEGITWTNIEYTDNVGCIQLFSKKPTGLLYLLDEESNFPHATSQTLLAKFNQQHKDNKY 483 (692)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcccccCCCcHHHHHHHhcCCccHHHHhHHHhcCCCCCHHHHHHHHHHHhCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCccccc---------CCCCCcch
Q 000617 393 FSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS---------KSSKFSSI 463 (1388)
Q Consensus 393 ~~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~---------~~~~~~tv 463 (1388)
|.+|+.....|+|+||||+|+|+++||++||+|.++++++++|++|+++||+.+|+..+.... ++.+.+||
T Consensus 484 ~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~tV 563 (692)
T cd01385 484 YEGPQVKEPAFIIQHYAGKVKYQIKDFREKNMDLMRQDIVALLKGSDSSYVRELIGMDPVAVFRWAVLRAAFRAMAAPSV 563 (692)
T ss_pred ccCCCCCCCeEEEEEecceeeecCCCHHHhccccccHHHHHHHHhCccHHHHHHhccCcccccccccccccccCccCCcH
Confidence 999988888999999999999999999999999999999999999999999999976443211 12234799
Q ss_pred hHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccc
Q 000617 464 GSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAP 543 (1388)
Q Consensus 464 ~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~ 543 (1388)
+++|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||+|++||++.|||+|++|.+|+.||++|+|
T Consensus 564 ~~~f~~~L~~L~~~L~~t~~hfIRCIKPN~~k~p~~Fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~~F~~rY~~L~~ 643 (692)
T cd01385 564 SAQFQTSLNKLMETLGKAEPFFIRCIKSNAEKIENCFDDELVLRQLRYTGMLETVRIRRAGYSVRYTYQDFTQQYRILLP 643 (692)
T ss_pred HHHHHHHHHHHHHHHhccCCeEEEEeCCCCccCcCccCHHHHHHHHHhhchHHHHHHHhccCCccccHHHHHHHHHHhCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred ccccCCCchHHHHHHHHhhcCCC--CceeccceeeecchhhHHHHHHHH
Q 000617 544 EVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRA 590 (1388)
Q Consensus 544 ~~~~~~~d~~~~~~~ll~~~~~~--~~~iGktkVFlr~~~~~~Le~~r~ 590 (1388)
... .+.++.|+.||..++++ +|++|+||||||++++..||....
T Consensus 644 ~~~---~~~~~~~~~il~~~~~~~~~~~iGkTkVFlr~~~~~~Le~~~~ 689 (692)
T cd01385 644 KGA---QSCREDISTLLSKMKIDKRNYQIGKTKIFMRETEKQALDETLH 689 (692)
T ss_pred ccc---cchHHHHHHHHHhcCCCcccEEeeCceEEEcccHHHHHHHHHh
Confidence 632 23467799999998774 899999999999999999997543
No 12
>cd01387 MYSc_type_XV Myosin motor domain, type XV myosins. In vertebrates, myosin XV appears to be expressed in sensory tissue and play a role in hearing. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis caus
Probab=100.00 E-value=3.2e-152 Score=1421.56 Aligned_cols=581 Identities=40% Similarity=0.694 Sum_probs=537.4
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|+.+++||||||||||||||||++|++|+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 81 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRfGk~~~l~ 157 (677)
T cd01387 81 MLDAKQNQCVIISGESGSGKTEATKLILRYLAAMNQGG---SAVITEQILEATPLLEAFGNAKTVRNDNSSRFGKFVEIF 157 (677)
T ss_pred HHhcCCCceEEEEcCCCCCeehHHHHHHHHHHhhcCCC---cchHHHHHHHHHHHHHHHhCcCCCCCCCccccceEEEEE
Confidence 67889999999999999999999999999999987532 356899999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
|+ +|.|+||+|.||||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||+++++..+++++|+++|.+
T Consensus 158 f~-~g~i~Ga~i~~yLLEksRvv~q~~gErnfHIFYqll~g~~~~~~~~~~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (677)
T cd01387 158 LE-GGVIVGAITSQYLLEKSRIVFQAKNERNYHIFYELLAGLPAQLRQAFSLQEAETYYYLNQGGNCEIAGKSDADDFRR 236 (677)
T ss_pred ec-CCcEeEEEEEEEecCCCceeecCCCCchHHHHHHHHhCCCHHHHHHhcCCCHHhCchhcCCCcccCCCcCHHHHHHH
Confidence 95 7999999999999999999999999999999999999 788999999999999999999999998999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc--CcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 237 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 237 (1388)
|+.||+.|||+++++..||+|||||||||||+|....+ .+.+.+.+ ...+..+|+||||++++|.++|+++.+.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~~---~~~l~~~a~LLgv~~~~L~~~lt~~~~~~ 313 (677)
T cd01387 237 LLAAMEVLGFSSEDQDSIFRILASILHLGNVYFEKRETDAQEVASVVS---AREIQAVAELLQISPEGLQKAITFKVTET 313 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeEEeeccCCCCcccccCC---HHHHHHHHHHhCCCHHHHHHHhccCeEEe
Confidence 99999999999999999999999999999999976432 12233333 34699999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHH
Q 000617 238 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 317 (1388)
Q Consensus 238 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq 317 (1388)
++|.+.+|+++++|..+||+|||+||++||+|||.+||.+|.+. ....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~e~i~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~-~~~~~IgILDIfGFE~f~~NsfEQLcINyaNEkLQ 392 (677)
T cd01387 314 RREKIFTPLTVESAVDARDAIAKVLYALLFNWLITRVNALVSPT-QDTLSIAILDIYGFEDLSFNSFEQLCINYANENLQ 392 (677)
T ss_pred CCceEeccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCceEEEEecCccccCCCCCHHHHHhHHHHHHHH
Confidence 99999999999999999999999999999999999999999864 45679999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCCC
Q 000617 318 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPK 397 (1388)
Q Consensus 318 ~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~ 397 (1388)
++|++|||+.||++|.+|||+|+.|+|.||++|||||+++|.|||+||||||++|+++|++|++|+...+++|+.|.+|+
T Consensus 393 ~~f~~~vF~~eq~eY~~EgI~~~~i~f~dN~~~ldLi~~kp~Gil~lLdee~~~p~~td~~~~~kl~~~~~~~~~~~~~~ 472 (677)
T cd01387 393 YLFNKIVFQEEQEEYIREQLDWTEIAFADNQPVINLISLKPYGILRILDDQCCFPQATDHTFLQKCHYHHGANPLYSKPK 472 (677)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCcccCcCChHHHHHHHhcCCCchHHHHHHHhcCCCCchHHHHHHHHHhccCCccccCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccc-----------cCCCCCcchhHH
Q 000617 398 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEES-----------SKSSKFSSIGSR 466 (1388)
Q Consensus 398 ~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~-----------~~~~~~~tv~~~ 466 (1388)
.+.+.|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.+|+...... .+..+.+||+++
T Consensus 473 ~~~~~F~I~HyAG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~s~~~~~~~~~tv~~~ 552 (677)
T cd01387 473 MPLPEFTIKHYAGKVTYQVHKFLDKNHDQVRQDVLDLFVSSRTRVVAHLFSSHAAQRAPKRLGKSSSGTRLYKAHTVAAK 552 (677)
T ss_pred CCCCeeEEEEeCceeeecCCChHHhccchhhHHHHHHHHhCCcHHHHHHHhhhhcccccccccCCCccccccCCCcHHHH
Confidence 888899999999999999999999999999999999999999999999996532100 012245799999
Q ss_pred HHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccc
Q 000617 467 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 546 (1388)
Q Consensus 467 f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 546 (1388)
|+.||+.||++|++|+||||||||||+.++|+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|++...
T Consensus 553 f~~sL~~L~~~l~~t~phfIRCIKPN~~k~~~~Fd~~~V~~QLr~~GvlE~vri~r~Gyp~r~~~~~F~~rY~~L~~~~~ 632 (677)
T cd01387 553 FQQSLLDLVEKMERCNPLFVRCLKPNHKKEPGLFEPDVVMAQLRYSGVLETVRIRKEGFPVRLPFQHFIDRYRCLVALKL 632 (677)
T ss_pred HHHHHHHHHHHHhcCCCeEEEEECCCCcCCccccChHHHHHHHHHhchHHHHHHHHccCCccccHHHHHHHHHHhCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999998744
Q ss_pred cCCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 547 EGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 547 ~~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
....+.+..+..++..+++ +.|++|+||||||++++..||.+|
T Consensus 633 ~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFlk~~~~~~LE~~r 677 (677)
T cd01387 633 ARPAPGDMCVSELSRLCGVEPPMYRVGASKLFLKEHLHQLLESMR 677 (677)
T ss_pred cCCCcHHHHHHHHHHHcCCCcccEEecceeEEEcCCHHHHHHhcC
Confidence 3322334445778887765 479999999999999999999875
No 13
>cd01382 MYSc_type_VI Myosin motor domain, type VI myosins. Myosin VI is a monomeric myosin, which moves towards the minus-end of actin filaments, in contrast to most other myosins. It has been implicated in endocytosis, secretion, and cell migration. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the minus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of
Probab=100.00 E-value=1.2e-151 Score=1424.50 Aligned_cols=581 Identities=42% Similarity=0.698 Sum_probs=535.8
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.++++||||||||||||||||++|+||+|||.++++. ..|+++|+++||||||||||||++||||||||||++|+
T Consensus 85 m~~~~~~QsIiisGESGaGKTes~K~il~yLa~~~~~~----~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~~~l~ 160 (717)
T cd01382 85 MKVLKMSQSIIVSGESGAGKTENTKFVLRYLTESYGSG----QDIDDRIVEANPLLEAFGNAKTVRNNNSSRFGKFVEIH 160 (717)
T ss_pred HHhcCCCCeEEEecCCCCChhHHHHHHHHHHHhhccCC----ccHHHHHHHHHHHHHHhhccccCCCCCcccceeEEEEE
Confidence 67889999999999999999999999999999986542 57999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCC---------------
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSN--------------- 144 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~--------------- 144 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++.+|+||++|.
T Consensus 161 f~~~g~i~Ga~i~~yLLEksRVv~~~~gErNfHIFYqLl~G~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~~~~~~~~ 240 (717)
T cd01382 161 FNEKNSVVGGFVSHYLLEKSRICVQSAEERNYHIFYRLCAGASEDIREKLHLSSPDDFRYLNRGCTRYFANKETDKQILQ 240 (717)
T ss_pred ECCCCCEeEEEEEEEeccCCceEecCCCCCchHHHHHHHhCCCHHHHHHhcCCChhhCeeecCCcccccccccccccccc
Confidence 9999999999999999999999999999999999999999 788999999999999999999753
Q ss_pred -----------ccccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc-CcccccccccchHHH
Q 000617 145 -----------CYELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE-IDSSVIKDEKSRFHL 212 (1388)
Q Consensus 145 -----------~~~~~~~~d~~~f~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~-~~~~~~~~~~~~~~l 212 (1388)
+...+++||+++|.+|+.||++|||+++++..||+|||||||||||+|.+... .+.+.+.+ .+...+
T Consensus 241 ~~~s~~~~~~~~~~~~~~dD~~~f~~~~~Al~~lg~s~~e~~~i~~iLaaILhLGni~F~~~~~~~~~~~~~~-~~~~~l 319 (717)
T cd01382 241 NRKSPEHLKKGALKDPLLDDYGDFQRMCVALKKIGLDDTEKLDLFRVVAGVLHLGNIDFEEAGSTSGGCNVKN-QSEQSL 319 (717)
T ss_pred cccccccccccccCCCCCcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCceeEeccCCCCCcceecC-CCHHHH
Confidence 23457899999999999999999999999999999999999999999986432 22233322 234579
Q ss_pred HHHHHhcCCCHHHHHHHHhhceEE-----eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeE
Q 000617 213 NMTAELLRCDAQSLEDALIKRVMV-----TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSI 287 (1388)
Q Consensus 213 ~~~a~LLgv~~~~L~~~l~~~~~~-----~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~ 287 (1388)
..||.||||++++|.++|++|.+. ++++.+++|+++++|..+||+|||+||++||+|||.+||.+|..+ ....+
T Consensus 320 ~~~a~LLgv~~~~L~~~l~~r~~~~~~g~~~~~~i~~~l~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~-~~~~~ 398 (717)
T cd01382 320 EYCAELLGLDQDDLRVSLTTRVMLTTAGGAKGTVIKVPLKVEQANNARDALAKAVYSHLFDHVVSRVNQCFPFE-TSSNF 398 (717)
T ss_pred HHHHHHcCCCHHHHHHHHhheEEecccccCCCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCCcE
Confidence 999999999999999999999998 788999999999999999999999999999999999999999764 35678
Q ss_pred EEeecccCccCCCCCChHHHHHHhhhhHHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchh
Q 000617 288 IGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDE 367 (1388)
Q Consensus 288 IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLde 367 (1388)
||||||||||+|+.||||||||||||||||++|++++|+.||++|.+|||+|++|+|.||++|||||+++|.|||++|||
T Consensus 399 IgiLDIfGFE~f~~NsfEQLcINyaNEkLQ~~f~~~if~~Eq~~Y~~EgI~~~~i~~~DN~~~ldLie~k~~Gil~lLDe 478 (717)
T cd01382 399 IGVLDIAGFEYFEHNSFEQFCINYCNEKLQQFFNERILKEEQELYQREGLGVNEVHYVDNQDCIDLIEAKLNGILDILDE 478 (717)
T ss_pred EEEEeccccccCCCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCccccccccHHHHHHHhcCCccHHHHhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhcCCCCChHhHHHHHHHHhhcCCCCCCCCCC----------CCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHh
Q 000617 368 ACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTA 437 (1388)
Q Consensus 368 e~~~p~~~d~~~~~kl~~~~~~~~~~~kp~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~ 437 (1388)
||++|++||++|++||++.+++|++|..|+.+ ...|+|+||||+|+|+++||++||+|.+++++.++|++
T Consensus 479 e~~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~V~Y~v~gfleKNkD~l~~~~~~ll~~ 558 (717)
T cd01382 479 ENRLPQPSDQHFTSVVHQKHKDHFRLTIPRKSKLAVHRNLRDDEGFIIRHFAGAVCYETTQFVEKNNDALHMSLESLICE 558 (717)
T ss_pred HhcCCCCCHHHHHHHHHHHhcCCcCccCCCccccccccccCCCCCEEEEecceeEeecCCChHHhcCccccHHHHHHHHh
Confidence 99999999999999999999999888777532 35899999999999999999999999999999999999
Q ss_pred cchhHHHhcCCCCcccc---c--CCCCCcchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhcc
Q 000617 438 AKCSFVAGLFPPLPEES---S--KSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCG 512 (1388)
Q Consensus 438 S~~~~v~~lf~~~~~~~---~--~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~ 512 (1388)
|+++||+.||+...... . +..++.||+++||.||+.||++|++|+||||||||||+.++|+.||...|++||||+
T Consensus 559 S~n~~i~~lf~~~~~~~~~~~~~~k~~~~tv~~~fk~qL~~Lm~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~ 638 (717)
T cd01382 559 SKDKFLRSLFESSTNNNDTKQKAGKLSFISVGNKFKTQLNLLLEKLRSTGSSFIRCIKPNLKMVSHQFEGAQILSQLQCS 638 (717)
T ss_pred CchHHHHHHhccccccccccccccCccCccHHHHHHHHHHHHHHHHhccCCeeeeeeCCCcccCCCCCChHHHHHHHHhc
Confidence 99999999998643211 1 122567999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcCCcccchHHHHHhhcccccccccCCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHH
Q 000617 513 GVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDAR 588 (1388)
Q Consensus 513 gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~ 588 (1388)
||||+|||+++|||+|++|.+|+.||+.|+|.... ..|++..|+.||..+++ ++|++|+||||||+|+++.||++
T Consensus 639 GvLE~vri~r~Gyp~R~~f~~F~~ry~~l~~~~~~-~~~~~~~~~~iL~~~~~~~~~~~~GkTKVFlr~g~~~~le~~ 715 (717)
T cd01382 639 GMVSVLDLMQGGFPSRASFHELYNMYKKYMPPKLV-RLDPRLFCKALFKALGLNENDYKFGLTKVFFRPGKFAEFDQI 715 (717)
T ss_pred chHHHHHHHHccCchhhhHHHHHHHHHHhCCcccC-CCCHHHHHHHHHHHcCCCcccEEecceeEEecccHHHHHHHH
Confidence 99999999999999999999999999999876443 35889999999999876 48999999999999999999975
No 14
>cd01379 MYSc_type_III Myosin motor domain, type III myosins. Myosin III has been shown to play a role in the vision process in insects and in hearing in mammals. Myosin III, an unconventional myosin, does not form dimers. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the
Probab=100.00 E-value=7.5e-151 Score=1401.47 Aligned_cols=560 Identities=38% Similarity=0.677 Sum_probs=522.8
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|...++||||||||||||||||++|++|+||+.+|+.. ..+|+++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGsGKTet~K~l~~yL~~~~~~~---~~~i~~~il~snpiLEAFGNAkT~~N~NSSRFGK~i~l~ 156 (653)
T cd01379 80 LVTYNQDQCIVISGESGSGKTESAHLLVQQLTVLGKAN---NRTLQEKILQVNSLVEAFGNARTGINDNSSRFGKYLEMK 156 (653)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHHhcCCC---CccHHHHHHHHHHHHHHhhccCcCCCCCcccceeEEEEE
Confidence 66789999999999999999999999999999987532 357999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhH-hhcCCCCCCccccccCCCccccCCCC----cH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDI-AKYKLGSPKSFHYLNQSNCYELDGVS----DA 154 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~-~~~~L~~~~~~~yl~~~~~~~~~~~~----d~ 154 (1388)
|+.+|.|+||+|.+|||||||||.|++||||||||||||+ ++++++ +.|+|.++..|+||+++++..+++++ |+
T Consensus 157 f~~~g~i~Ga~i~~yLLEksRVv~q~~gERNfHIFYqLl~G~~~~~~~~~~~L~~~~~~~yL~~~~~~~~~~~~~~~~~~ 236 (653)
T cd01379 157 FTRSGAVVGARISEYLLEKSRVVHQAEGEKNFHIFYYIYAGLAEEKKLAEYKLPESKTPRYLQNEATRVVQDITSNKFYK 236 (653)
T ss_pred ECCCCcEEEEEEEEEeccCCceeccCCCCCceeeHHHHHhCCCHHHHHHhcCCCCccccCccCCCCccccCCCccchhHH
Confidence 9999999999999999999999999999999999999999 555554 78999999999999999887777765 46
Q ss_pred HHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc---CcccccccccchHHHHHHHHhcCCCHHHHHHHHh
Q 000617 155 HEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE---IDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALI 231 (1388)
Q Consensus 155 ~~f~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~---~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~ 231 (1388)
++|.+|+.||..|||+++++..||+|||||||||||+|..... .+.+.+. +...+..+|+||||++++|.++|+
T Consensus 237 ~~f~~~~~al~~lg~~~~e~~~I~~iLaaILhLGNi~F~~~~~~~~~~~~~i~---~~~~l~~~A~LLgv~~~~L~~~L~ 313 (653)
T cd01379 237 DQFEQIEQCFRVIGFTDEEVGSVYRILAAILNLGDIEFGSVASEHQTDKSRVS---NVAALENAASLLCIRSDELQEALT 313 (653)
T ss_pred HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhhcceEEEeccccCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhc
Confidence 8899999999999999999999999999999999999976432 1223333 345799999999999999999999
Q ss_pred hceEEeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCC-----CCeEEEeecccCccCCCCCChHH
Q 000617 232 KRVMVTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD-----SKSIIGVLDIYGFESFKCNSFEQ 306 (1388)
Q Consensus 232 ~~~~~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~-----~~~~IgiLDi~GFe~f~~Nsfeq 306 (1388)
++.+.++++++++|+++++|..+||||||+||++||+|||.+||.+|.++.. ...+||||||||||+|+.|||||
T Consensus 314 ~~~~~~~ge~i~~~~~~~qA~~~rdalak~lY~~LF~wiV~~IN~~l~~~~~~~~~~~~~~IgiLDI~GFE~f~~NsfEQ 393 (653)
T cd01379 314 SHCVVTRGETIVRHNTVEKATDARDAMAKALYGRLFSWIVNRINSLLKHDRNASNSSDQLNVGILDIFGFENFKKNSFEQ 393 (653)
T ss_pred ccEEEeCCceeeecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccceEEEEeccccccCCCCCHHH
Confidence 9999999999999999999999999999999999999999999999986532 35799999999999999999999
Q ss_pred HHHHhhhhHHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHH
Q 000617 307 FCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQT 386 (1388)
Q Consensus 307 lciNyanEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~ 386 (1388)
|||||||||||++|+++||+.||++|.+|||+|+.|+|.||++|||||++||.|||++|||||++|+|||++|++|+..+
T Consensus 394 LcINyaNEkLQ~~f~~~vf~~Eq~eY~~EgI~~~~i~~~dN~~~ldli~~kp~Gil~lLdee~~~~~~td~~~~~kl~~~ 473 (653)
T cd01379 394 LCINIANEQIQYYFNQHIFAWEQQEYLNEGVDARLVEYEDNRPLLDMFLQKPLGLLALLDEESRFPQATDQTLVEKFEDN 473 (653)
T ss_pred HHhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHhHccCCCcHHHHHHHHhcCCCCCHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999998
Q ss_pred hhcCCCCCCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHH
Q 000617 387 FAKNNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSR 466 (1388)
Q Consensus 387 ~~~~~~~~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~ 466 (1388)
++ ++.|.+|+...+.|+|+||||+|+|+++||++||+|.++++++++|++| +||+++
T Consensus 474 ~~-~~~~~~~~~~~~~F~I~HyAG~V~Y~~~gfleKNkD~l~~~~~~ll~~S----------------------~tv~~~ 530 (653)
T cd01379 474 LK-SKFFWRPKRVELSFGIHHYAGKVLYNASGFLEKNRDFLPADIVLLLRSS----------------------QTVASY 530 (653)
T ss_pred cC-CCCccCCCCCCCceEEEEeceeEeecCCCHHHhccccccHHHHHHHHhC----------------------cHHHHH
Confidence 85 4678899888889999999999999999999999999999999999887 589999
Q ss_pred HHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccc
Q 000617 467 FKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL 546 (1388)
Q Consensus 467 f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~ 546 (1388)
||.||++||++|++|+||||||||||+.+.|+.||...|++||||+||+|+|||+++|||+|++|.+|+.||++|++...
T Consensus 531 fr~~l~~L~~~l~~t~~hfIRCIKPN~~k~~~~fd~~~V~~QLr~~GvlE~iri~r~Gyp~r~~~~~F~~rY~~l~~~~~ 610 (653)
T cd01379 531 FRYSLMDLLSKMVVGQPHFVRCIKPNEDRQAKKFDAEKVLKQLRYTGILETARIRRQGFSHRILFANFIRRYCFLAYRFE 610 (653)
T ss_pred HHHHHHHHHHHHhccCCceEEeeCCCcccCccccCHHHHHHHHHHcchHHHHHHHHcCCCccccHHHHHHHHHHhccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999987654
Q ss_pred cCCCchHHHHHHHHhhcCCCCceeccceeeecchhhHHHHHHH
Q 000617 547 EGNYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 547 ~~~~d~~~~~~~ll~~~~~~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
....+.++.|+.||..++.++|++|+||||||++++..||.+|
T Consensus 611 ~~~~~~~~~~~~il~~~~~~~~~~GktkvFlk~~~~~~le~~~ 653 (653)
T cd01379 611 EEPVSSPESCALILEKAKLDNWALGKTKVFLKYYHVEQLNLMR 653 (653)
T ss_pred cccCChHHHHHHHHHhCCCCCEEecceEEEEecCHHHHHHhcC
Confidence 4445789999999999999999999999999999999999875
No 15
>smart00242 MYSc Myosin. Large ATPases. ATPase; molecular motor. Muscle contraction consists of a cyclical interaction between myosin and actin. The core of the myosin structure is similar in fold to that of kinesin.
Probab=100.00 E-value=6.6e-150 Score=1410.83 Aligned_cols=586 Identities=54% Similarity=0.884 Sum_probs=550.1
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|..+++||||||||||||||||++|++|+||+.++++.. ....|+++|+++||||||||||||++|+||||||||++|+
T Consensus 86 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~~-~~~~i~~~i~~~n~iLEAFGNAkT~~N~NSSRfgk~~~l~ 164 (677)
T smart00242 86 MLNDKENQSIIISGESGAGKTENTKKIMQYLAAVSGSNT-SVGSVEDQILESNPILEAFGNAKTVRNNNSSRFGKFIEIH 164 (677)
T ss_pred HHhcCCCceEEEecCCCCcchHHHHHHHHHHHhhcCCCC-ccccHHHHHHHHHHHHHHhhccccCCCCCccchheeEEEE
Confidence 677899999999999999999999999999999986532 2467999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.||||||||||.|++||||||||||||+ ++++++++|+|.++.+|+||+++++..++++||+++|.+
T Consensus 165 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqLl~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 244 (677)
T smart00242 165 FDAKGKIVGAKIETYLLEKSRVVSQAKGERNYHIFYQLLAGASEELKKELGLKSPEDYRYLNQGGCLSVDGIDDAEEFKE 244 (677)
T ss_pred ECCCCcEeEEEEEEeecCCceEEecCCCCCchHHHHHHHcCCCHHHHHhcCCCChhhCceeCCCCCccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 788999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCccc-ccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeC
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSS-VIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 238 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~-~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 238 (1388)
|+.||+.|||+++++..||+|||||||||||+|....+.+.. .+. +...+..+|.||||++++|.++|+++.+.++
T Consensus 245 ~~~al~~lG~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 321 (677)
T smart00242 245 TLNAMRVLGFSEEEQESIFKILAAILHLGNIEFEEGRNDNAASTVK---DKEELENAAELLGVDPEELEKALTKRKIKTG 321 (677)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcceeEEecCCCCcccccC---CHHHHHHHHHHhCCCHHHHHHHhcccEEEeC
Confidence 999999999999999999999999999999999865432221 122 3457999999999999999999999999999
Q ss_pred CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHHH
Q 000617 239 EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQ 318 (1388)
Q Consensus 239 ~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~ 318 (1388)
+|.+++++++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||+
T Consensus 322 ~e~~~~~~~~~~a~~~rd~lak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDifGFE~f~~NsfEQLcINyaNEkLq~ 401 (677)
T smart00242 322 GEVITKPLNVEQALDARDALAKALYSRLFDWLVKRINKSLSFKDGSTYFIGVLDIYGFEIFEVNSFEQLCINYANEKLQQ 401 (677)
T ss_pred CceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEEEEEecccccccccCCHHHHHhHhhHHHHHH
Confidence 99999999999999999999999999999999999999999876788999999999999999999999999999999999
Q ss_pred HHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCCCCC-
Q 000617 319 HFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFSKPK- 397 (1388)
Q Consensus 319 ~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~- 397 (1388)
+|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.+++|+.|.+|+
T Consensus 402 ~f~~~~f~~eq~~y~~EgI~~~~i~~~dN~~~l~li~~~~~Gil~lLdee~~~~~~td~~~~~kl~~~~~~~~~~~~~~~ 481 (677)
T smart00242 402 FFNQHVFKLEQEEYEREGIDWTFIDFFDNQDCIDLIEKKPPGILSLLDEECRFPKATDQTFLEKLNQTHEKHPHFSKPRK 481 (677)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCCCCCCCcHHHHHHHHcCCccHHHHHHHHhcCCCCCHHHHHHHHHHHhcCCCCccCCCC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999984
Q ss_pred CCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHHHHH
Q 000617 398 LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSLMET 477 (1388)
Q Consensus 398 ~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L~~~ 477 (1388)
..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.+|+.......+..+.+||+++|+.||+.||++
T Consensus 482 ~~~~~F~I~H~AG~V~Y~~~gfleKN~D~l~~~~~~ll~~S~n~~i~~lf~~~~~~~~~~~~~~tv~~~fk~~L~~L~~~ 561 (677)
T smart00242 482 KGRTEFIIKHYAGDVTYDVTGFLEKNKDTLFKDLIELLQSSKNPLIASLFPSGESNAGSKKRFRTVGSQFKESLNKLMDT 561 (677)
T ss_pred CCCCeEEEEecceeEeecCccHHHHccchhhHHHHHHHHhCCcHHHHHHhccccccccccCCCCcHHHHHHHHHHHHHHH
Confidence 46679999999999999999999999999999999999999999999999875443334446789999999999999999
Q ss_pred HcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccccccc-CCCchHHHH
Q 000617 478 LNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLE-GNYDDQVAC 556 (1388)
Q Consensus 478 l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~-~~~d~~~~~ 556 (1388)
|++|+||||||||||+.++|+.||...|++|||++||+|++||++.|||+|++|.+|+.||++|++.... ...|+++.|
T Consensus 562 l~~t~~hfIRCIKPN~~k~~~~Fd~~~V~~QLr~~Gvle~iri~r~Gyp~r~~~~~F~~ry~~L~~~~~~~~~~~~k~~~ 641 (677)
T smart00242 562 LNSTNPHFIRCIKPNEEKKPGDFDSSLVLHQLRYLGVLETIRIRRAGFPYRLPFDEFLQRYRVLLPDTWPPWGGDAKEAC 641 (677)
T ss_pred HhccCCeEEEEeCCCcccCcccccHHHHHHHHHhcccHHHHHHHHccccceecHHHHHHHHHHhCcccccccCCCHHHHH
Confidence 9999999999999999999999999999999999999999999999999999999999999999986433 234689999
Q ss_pred HHHHhhcCC--CCceeccceeeecchhhHHHHHHHH
Q 000617 557 QMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRA 590 (1388)
Q Consensus 557 ~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r~ 590 (1388)
+.||..+++ ++|++|+||||||++++..||++|+
T Consensus 642 ~~iL~~~~~~~~~~~iGkTkVFlk~~~~~~Le~~R~ 677 (677)
T smart00242 642 EALLQSLGLDEDEYQLGKTKVFLRPGQLAELEELRE 677 (677)
T ss_pred HHHHHhcCCCcccEEecCceEeECccHHHHHHhhcC
Confidence 999999865 5899999999999999999999874
No 16
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=100.00 E-value=6.7e-150 Score=1286.88 Aligned_cols=613 Identities=41% Similarity=0.705 Sum_probs=568.3
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.-+++|||||||||||||||+.||+||+|++.++|. +.+...|.+-||++||+|||||||||+||+||||||||+||+
T Consensus 98 M~~~~EnQCVIISGESGAGKT~aAK~IM~YIs~vS~~-g~kvq~vkdiiL~sNPLLEaFG~akTvRNnNSSR~GKY~Ei~ 176 (1106)
T KOG0162|consen 98 MKIDNENQCVIISGESGAGKTVAAKRIMQYISRVSGG-GEKVQHVKDIILQSNPLLEAFGNAKTVRNNNSSRFGKYLEIQ 176 (1106)
T ss_pred hhhccccceEEEecCCCCCchHHHHHHHHHHHHhccC-CcchhhhhhHhhccchHHHHhcchhhhccCCcccccceEEEE
Confidence 7789999999999999999999999999999999853 445567889999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
|+..|..+|++|..|||||||||.|.++||||||||||+. |+++.+..||+..|+.|.|++.++|+.++++||..+|.+
T Consensus 177 Fs~ggeP~ggkisNfLLEKsRVV~q~~neRnFHIfYQ~~kgAs~~~r~t~Gi~~pe~Y~Y~~~sg~~s~D~idd~kdfq~ 256 (1106)
T KOG0162|consen 177 FSRGGEPDGGKISNFLLEKSRVVMQNENERNFHIFYQLTKGASQEYRQTFGIQEPEYYVYLNASGCYSVDDIDDRKDFQE 256 (1106)
T ss_pred ecCCCCcCcchhhHHHHhhhhhhhccCCccceeeehhhhcCccHHHHhhhCcCCchheeeeccccceeccccchHHHHHH
Confidence 9999999999999999999999999999999999999999 899999999999999999999999999999999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe--
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT-- 237 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~-- 237 (1388)
|..||+++||.+++|+.||++||+|||||||.|.... ..+.+.+. ..++-.|.||||++..|...||.|.+.+
T Consensus 257 Tl~AM~vIGi~~~eQ~~v~rmva~IL~lGNIsF~Ee~--~~a~V~~~---~~~~f~ayLlgi~s~~l~~~Lt~R~M~s~~ 331 (1106)
T KOG0162|consen 257 TLHAMKVIGINQEEQDEVLRMVAGILHLGNISFIEEG--NYAAVSDK---SVLEFPAYLLGIDSARLEEKLTSRIMESKW 331 (1106)
T ss_pred HHHHheeccCChHHHHHHHHHHHHHHhccceeEEeeC--Ccceeccc---hHHHhHHHHhcCCHHHHHHHHHHHHHhhcc
Confidence 9999999999999999999999999999999998732 22333332 3688999999999999999999998864
Q ss_pred --CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCeEEEeecccCccCCCCCChHHHHHHhhhh
Q 000617 238 --PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNE 314 (1388)
Q Consensus 238 --~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFe~f~~NsfeqlciNyanE 314 (1388)
+.+.+..||+++||.+.||||||+||.+||||||++||.++.... ....+||||||||||+|+.||||||||||.||
T Consensus 332 G~kr~~~~v~LNv~QA~~~RDAlakaiy~~lFD~lV~rvNkam~~~~~~~~~sIGiLDIYGFEIFe~N~FEQ~CINfVNE 411 (1106)
T KOG0162|consen 332 GGKREVIHVPLNVEQASYTRDALAKAIYARLFDWLVERVNKAMQAFKGSEEYSIGILDIYGFEIFENNGFEQFCINFVNE 411 (1106)
T ss_pred cccceeEEecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccceeeEEeeeeeecccCCHHHHHHHHHHH
Confidence 457899999999999999999999999999999999999997443 36789999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcC-cccccccchhhhcCC----CCChHhHHHHHHHHhhc
Q 000617 315 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKK-PGGIIALLDEACMFP----KSTHETFSQKLCQTFAK 389 (1388)
Q Consensus 315 kLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~-~~Gil~lLdee~~~p----~~~d~~~~~kl~~~~~~ 389 (1388)
||||.|++-+++.|||||.+|||.|++|+|.||.-++||||.| |-||+++|||.|.-. .|.|++|+++|...++.
T Consensus 412 KLQQIFIeLTLKaEQEeYvrE~I~WTpIkYFnNKvVCDLIE~K~PPGims~ldD~~At~Ha~~~~aDqa~~qrLn~~~~s 491 (1106)
T KOG0162|consen 412 KLQQIFIELTLKAEQEEYVREGIKWTPIKYFNNKVVCDLIENKRPPGIMSALDDVCATAHADSEGADQALLQRLNKLFGS 491 (1106)
T ss_pred HHHHHHHHHhhhhhHHHHHHhcccccchhhcCCeeeeehhhccCCchHHHHHHHHHHHhccccchhHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999964 569999999999754 36799999999999999
Q ss_pred CCCCCCCCCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHH
Q 000617 390 NNRFSKPKLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKL 469 (1388)
Q Consensus 390 ~~~~~kp~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~ 469 (1388)
|++|..- ...|+|+||||+|+||++||.+||+|.+..|++.|++.|+++|++.||+...... +..+.+|.|+.++.
T Consensus 492 ~phF~~~---s~~FvIkHYAGdVtYdi~G~~drNrD~L~~DlieLm~ts~~~Fl~slFPe~v~~d-skrRP~Tag~kIkk 567 (1106)
T KOG0162|consen 492 HPHFESR---SNGFVIKHYAGDVTYDIDGFCDRNRDVLFKDLIELMQTSENPFLKSLFPENVDAD-SKRRPPTAGDKIKK 567 (1106)
T ss_pred CCccccc---cCceEEEEeccceeeecccccccchhHHHHHHHHHHhccchHHHHHhCchhhccc-ccCCCCCchhhHHh
Confidence 9999753 4789999999999999999999999999999999999999999999999754433 34466899999999
Q ss_pred HHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccc-cC
Q 000617 470 QLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVL-EG 548 (1388)
Q Consensus 470 sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~-~~ 548 (1388)
|.++|.+||..|.||||||||||+.|.|+.||..+|.+|+.+.|+-|.|||+|+||.+|..|+.|+.||.+|.|... .+
T Consensus 568 qANdLVeTLmKc~P~YIR~IKPNeTK~pnD~ee~~V~HQveYLGLqENiRvRRAGfAYRr~F~kF~qRyailsp~t~~tw 647 (1106)
T KOG0162|consen 568 QANDLVETLMKCQPHYIRCIKPNETKSPNDWEESRVKHQVEYLGLQENIRVRRAGFAYRRAFDKFAQRYAILSPQTWPTW 647 (1106)
T ss_pred hHHHHHHHHHhcCcceeEeeCCCCCCCCccHHHHHHHHHHHhcchhhheeehhhhhHHHHHHHHHHHHheecCccccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998853 35
Q ss_pred CCchHHHHHHHHhhcCC--CCceeccceeeecchh-hHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHH
Q 000617 549 NYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQ-MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVIL 623 (1388)
Q Consensus 549 ~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~-~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~i 623 (1388)
..|++.+|+.||..... ++||+|.||||++..- +-.||.+|++++...|.+||++||+|++|++|.++|.-+..+
T Consensus 648 qGD~~~av~~il~~~~m~~~qyQmG~tkVFiKnPEsLF~LEemRer~~d~~A~~IQkAWRrfv~rrky~k~ree~t~l 725 (1106)
T KOG0162|consen 648 QGDEKQAVEHILRDVNMPSDQYQMGVTKVFIKNPESLFLLEEMRERKWDGMARRIQKAWRRFVARRKYEKMREEATKL 725 (1106)
T ss_pred ccchHHHHHHHHHhcCCChhHhhccceeEEecChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 67999999999998765 5899999999999854 578999999999999999999999999999999998766654
No 17
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=100.00 E-value=5.7e-147 Score=1436.68 Aligned_cols=833 Identities=38% Similarity=0.619 Sum_probs=657.6
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCC---CccHHHHHHhhccHHHHhccCCCCcCCCCCcccceE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVE---GRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFV 77 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~---~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~ 77 (1388)
|+.++.||||+|+||||||||+|||.||+|||.|+++.... +.+++++|+++||||||||||+|++|+|||||||||
T Consensus 162 mL~~renQSiLiTGESGAGKTeNTKkVIqyla~va~~~~~~~~~~~~le~qi~q~npvLeaFGNa~tvrn~NssRFgkfi 241 (1930)
T KOG0161|consen 162 MLQDRENQSILITGESGAGKTENTKKVIQYLASVASSSTKKVKIEGTLEDQILQANPVLEAFGNAKTVRNDNSSRFGKFI 241 (1930)
T ss_pred HHhcCCCceEeeecCCCCCcchhHHHHHHHHHHHhhccccCCCCCCChHHHHHHhCchHHHhcChhhhcCCCCcccceeE
Confidence 88999999999999999999999999999999998754211 157899999999999999999999999999999999
Q ss_pred EEEEcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCC-CCccccccCCCccccCCCCcHH
Q 000617 78 EIQFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGS-PKSFHYLNQSNCYELDGVSDAH 155 (1388)
Q Consensus 78 ~l~f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~-~~~~~yl~~~~~~~~~~~~d~~ 155 (1388)
.|+||..|.|+||.|.+||||||||++|+++|||||||||+++ ++++.+..|.|.+ +.+|.|+.++.. .++|+||++
T Consensus 242 rI~F~~~G~i~~a~Ie~yLLEKsRv~~Q~~~Er~yhiFyqlls~~~~~l~~~l~L~~~~~~Y~f~~~~~~-~i~g~dd~e 320 (1930)
T KOG0161|consen 242 RIHFDATGKIAGADIETYLLEKSRVIRQAPGERNYHIFYQLLSGADPELKEELLLSDNVKDYKFLSNGES-TIPGVDDAE 320 (1930)
T ss_pred EEecCCCCccchhhHHHHHHHHhHhhccCcchhHHHHHHHHHhCCCHHHHHHHhhcccchhhhhhccccC-CCCCcchHH
Confidence 9999999999999999999999999999999999999999999 7888888999976 899999999887 899999999
Q ss_pred HHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceE
Q 000617 156 EYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVM 235 (1388)
Q Consensus 156 ~f~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~ 235 (1388)
+|..|..||+++||+++++.+||+|+||||||||+.|......+...+.+ ......+|.||||++++|.+++++..+
T Consensus 321 ef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~~~~~~~qa~~~~---~~~a~ka~~llg~~~~~~~~al~~pri 397 (1930)
T KOG0161|consen 321 EFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFKQEPREEQAEFDN---TEVADKACHLLGINVEEFLKALLRPRI 397 (1930)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhhccccccccCCCC---chHHHHHHHHcCCCHHHHHHHhcccce
Confidence 99999999999999999999999999999999999998764444444433 346899999999999999999999999
Q ss_pred EeCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhH
Q 000617 236 VTPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEK 315 (1388)
Q Consensus 236 ~~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEk 315 (1388)
.++++-+.+..+.+|+..+..+|||++|+++|.|+|.+||.+|.......+|||||||+|||+|+.||||||||||+|||
T Consensus 398 Kvg~e~v~k~q~~~q~~~~v~alAk~lYerlF~wlV~riN~sld~~~~~~~fIgvLDiaGFEIfe~nSFEQLciNytnEk 477 (1930)
T KOG0161|consen 398 KVGREWVSKAQNVEQVLFAVEALAKALYERLFGWLVKRINKSLDSKQQRDYFIGVLDIAGFEIFEFNSFEQLCINYTNEK 477 (1930)
T ss_pred eccchhhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCCcceeeeeccccccCcCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999998776778999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHhHHHHhhcCCccccccc-cChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHh-hcCCCC
Q 000617 316 LQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRF 393 (1388)
Q Consensus 316 Lq~~f~~~~f~~eq~~y~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~ 393 (1388)
|||+||+|+|.+||++|.+|||.|++|+| .|-|||||||++ |.||+|+|||||.+|++||.+|++||+..| ++|+.|
T Consensus 478 LQqfFnh~mFvlEqeeY~~EgIew~fidfG~Dlq~~idLIEk-p~Gi~slLdEEc~~PkAtd~tf~~kL~~~~~gk~~~f 556 (1930)
T KOG0161|consen 478 LQQFFNHHMFVLEQEEYQREGIEWDFIDFGLDLQPTIDLIEK-PMGILSLLDEECVVPKATDKTFLEKLCDQHLGKHPKF 556 (1930)
T ss_pred HHhhhcchhhhhhHHHHHHhCCceeeeccccchhhhHHHHhc-hhhHHHHHHHHHhcCCCccchHHHHHHHHhhccCccc
Confidence 99999999999999999999999999999 489999999996 559999999999999999999999999999 889999
Q ss_pred CCCC--CCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcc-----------cccCCCCC
Q 000617 394 SKPK--LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE-----------ESSKSSKF 460 (1388)
Q Consensus 394 ~kp~--~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~-----------~~~~~~~~ 460 (1388)
.+|+ ....+|.|.||||+|.|++.||++||+|++++.++.+|+.|++++|+.||++... ...|++.|
T Consensus 557 ~~~k~~~~~~~F~l~HyaG~V~Y~~~~WL~Knkdpln~~v~~ll~~s~~~~v~~l~~~~~~~~~~~~~~~~~~~~K~g~F 636 (1930)
T KOG0161|consen 557 QKPKGKKAEAHFALVHYAGTVDYNVDGWLEKNKDPLNDNVVSLLKQSTNKLVSSLFQDYAGAAAAAKGGEALKKTKKGSF 636 (1930)
T ss_pred cCcccccchhhhheeeecceeccCccchhhcCCCCchHHHHHHHHhcccHHHHHHhhhhhccchhhhhhhhhcccCCcch
Confidence 9997 4568999999999999999999999999999999999999999999999987211 13455678
Q ss_pred cchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcc
Q 000617 461 SSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGI 540 (1388)
Q Consensus 461 ~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~ 540 (1388)
.||+..++.||+.||.+|++|+|||||||.||+.|.|+.+|.+.|+.||||.||||.|||++.|||.|++|.+|..||.+
T Consensus 637 ~Tvs~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLEgIRicR~GfPnr~~~~eFrqRy~l 716 (1930)
T KOG0161|consen 637 RTVSQLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLEGIRICRQGFPNRMPFQEFRQRYEL 716 (1930)
T ss_pred hhHHHHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHHHHHHHHhhCccccchHHHHHhHHh
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999995
Q ss_pred ccccccc-CCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhh
Q 000617 541 LAPEVLE-GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARRAEVLGNAARKIQRQTRTYIARKEFILLR 617 (1388)
Q Consensus 541 l~~~~~~-~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r 617 (1388)
+.+.... +..|.+.+|..++..+.. .-|++|.||||||+|+++.||.+|.+.+....+.+|+.+|||++|+.|
T Consensus 717 la~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~---- 792 (1930)
T KOG0161|consen 717 LAADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEF---- 792 (1930)
T ss_pred hhhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Confidence 5554433 346779999999998755 469999999999999999999999999887766555555555555444
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHh-HhHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHHHHHHHhhHHHHHH
Q 000617 618 NAAVILQSFLRGEMARKLYEQLR-REAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIA 696 (1388)
Q Consensus 618 ~aai~iQa~~Rg~laR~~~~~~r-~~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~~~~~~~~~aAi~I 696 (1388)
.+.. +..|+.+||+++|.|...+.|.+++-.. .++..+.+
T Consensus 793 -------------------~kr~~~~~ai~~iQ~N~r~~~~lr~w~W~~Lf~-----kvkPLL~~--------------- 833 (1930)
T KOG0161|consen 793 -------------------KKRLQQLDAIKVIQRNIRAYLKLRTWPWWRLFT-----KVKPLLKV--------------- 833 (1930)
T ss_pred -------------------HHHHHHHHHHHHHHHHHHHHHhhccCHHHHHHH-----HHHHHHHh---------------
Confidence 3332 4467888999988888777776443210 01111100
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 697 QAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEA 776 (1388)
Q Consensus 697 Q~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~ 776 (1388)
.-+....+...... ...+. ++...+.....+.....++..+..+++..++.++....+.++.
T Consensus 834 --~~~ee~~~~~~~e~-------------~~l~~---~l~~~e~~~~ele~~~~~~~~e~~~l~~~l~~e~~~~~~aee~ 895 (1930)
T KOG0161|consen 834 --TKTEEEMRAKEEEI-------------QKLKE---ELQKSESKRKELEEKLVKLLEEKNDLQEQLQAEKENLAEAEEL 895 (1930)
T ss_pred --hhhHHHHHHhHHHH-------------HHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 00000000000000 00001 1222222333344444455555555555555554433332222
Q ss_pred H---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 777 K---SQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQT 853 (1388)
Q Consensus 777 ~---~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~ 853 (1388)
. ..+...++..+.++..++++.+.+.... ......++..+.+ .+..+++++....+++.+....+.+
T Consensus 896 ~~~~~~~k~~le~~l~~~~~~~e~~ee~~~~l----e~~~~~~~~e~~~------l~~~~~~~E~~~~k~~~Ek~~~e~~ 965 (1930)
T KOG0161|consen 896 LERLRAEKQELEKELKELKERLEEEEEKNAEL----ERKKRKLEQEVQE------LKEQLEELELTLQKLELEKNAAENK 965 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2 2333344444444444443333322111 1111111111111 2334444444444455555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 854 ADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 854 ~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+..++.++..++..+.++.+.-+.+|..+.++++.++..++++..|.+.+.+|+++
T Consensus 966 ~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~ 1021 (1930)
T KOG0161|consen 966 LKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQ 1021 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555555555555666667777777777777666666666666654
No 18
>cd00124 MYSc Myosin motor domain. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the head to pivot and move the fila
Probab=100.00 E-value=8.8e-148 Score=1396.61 Aligned_cols=583 Identities=51% Similarity=0.836 Sum_probs=542.3
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.++++||||||||||||||||++|+||+||+.+++.. ...++++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiisGESGaGKTe~~k~il~yl~~~~~~~---~~~i~~~i~~~n~iLEaFGNAkT~~N~NSSRfGk~~~l~ 156 (679)
T cd00124 80 MLRDRRNQSIIISGESGAGKTENTKLIMKYLASLAGSN---DTGIEEKILAANPILEAFGNAKTVRNNNSSRFGKFIELQ 156 (679)
T ss_pred HHhcCCCceEEEecCCCCCchHHHHHHHHHHHhccCCC---cchHHHHHHHHhHHHHHhcccccCCCCCcccceeEEEEE
Confidence 67889999999999999999999999999999997643 357999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLA 159 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~ 159 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ +++++++.|+|.++++|+||+++++..++++||+++|.+
T Consensus 157 f~~~g~i~ga~i~~yLLEksRv~~~~~gErnfHIFYqll~g~~~~~~~~l~L~~~~~y~yL~~~~~~~~~~~~d~~~f~~ 236 (679)
T cd00124 157 FDETGKISGAKITTYLLEKSRVVSQEPGERNFHIFYQLLAGASPEERKKLGLKRPESYRYLNQGGCNDVDGIDDAEEFEE 236 (679)
T ss_pred ECCCCcEeEEEEEEEEcccceeeccCCCCCchhHHHHHHcCCCHHHHHhcCCCCcccCeeeCCCCcccCCCCCHHHHHHH
Confidence 9999999999999999999999999999999999999999 789999999999999999999999988899999999999
Q ss_pred HHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcc--cccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEe
Q 000617 160 TRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDS--SVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVT 237 (1388)
Q Consensus 160 ~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~--~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 237 (1388)
++.||++|||+++++..||+|||||||||||+|....+.+. +.+. +...++.+|.||||++++|.++|+++.+.+
T Consensus 237 ~~~al~~lg~~~~e~~~i~~iLaaILhLGni~f~~~~~~~~~~~~~~---~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~ 313 (679)
T cd00124 237 LKEALKSLGFSEEEIESIFRILAAILHLGNIEFKSVGGEGQEAAEVK---NTEVLSKAAELLGLDPEELEEALTYKVTKV 313 (679)
T ss_pred HHHHHHHcCCCHHHHHHHHHHHHHHHhhcCeeEEecCCCCcceeecC---CHHHHHHHHHHhCCCHHHHHHHhhccEEEe
Confidence 99999999999999999999999999999999986543222 2333 345799999999999999999999999999
Q ss_pred CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHH
Q 000617 238 PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 317 (1388)
Q Consensus 238 ~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq 317 (1388)
+++.+++|+++++|..+||+|||+||++||+|||.+||.+|.++.....+||||||||||+|+.||||||||||||||||
T Consensus 314 ~~~~~~~~~~~~~a~~~rdalak~lY~~lF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFE~f~~NsfEQLcINy~NEkLq 393 (679)
T cd00124 314 GGEVITIPLTKEEAVDSRDSLAKALYSRLFDWIVSRINSSLKPKDGRSLFIGILDIFGFEIFEKNSFEQLCINYANEKLQ 393 (679)
T ss_pred CCceEEecCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCceeeEEeccccccCCCCCHHHHhcccchHHHH
Confidence 99999999999999999999999999999999999999999987677889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCC-CC
Q 000617 318 QHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFS-KP 396 (1388)
Q Consensus 318 ~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~-kp 396 (1388)
++|++++|+.||++|.+|||+|+.|+|.||++|||||+++|.|||++|||||++|+++|++|++||.+.++++++|. ++
T Consensus 394 ~~f~~~~f~~eq~~y~~EgI~~~~i~~~dn~~~ldli~~~~~Gi~~lLdee~~~~~~~d~~~~~kl~~~~~~~~~~~~~~ 473 (679)
T cd00124 394 QFFNQHVFKLEQEEYQEEGIDWESIDFTDNQEVIDLIEKKPGGLLSLLDEECLFPKGTDETFLEKLNNKLKSNNAFYPAK 473 (679)
T ss_pred HHHHHHHHHHHHHHHHhcCCCccCCcCCCCHHHHHHHhcCCCcHHHHHHHHhCCCCCCHHHHHHHHHHHhcCCcccccCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999998864 34
Q ss_pred CCCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCccc-----------ccCCCCCcchhH
Q 000617 397 KLSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEE-----------SSKSSKFSSIGS 465 (1388)
Q Consensus 397 ~~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~-----------~~~~~~~~tv~~ 465 (1388)
+..+..|+|+||||+|+|+++||++||+|.++++++++|+.|++++|+.||+..... ..+..+.+||++
T Consensus 474 ~~~~~~F~I~HyAG~V~Y~v~gfleKN~D~l~~~~~~ll~~S~~~~i~~lf~~~~~~~~~~~~~~~~~~~~~~~~~tv~~ 553 (679)
T cd00124 474 KNAPTEFTIKHYAGDVTYDARGFLEKNKDVLSPELVSLLKSSSNPFIRELFESELSKTGNSSTGSTSSKGKKKKGQTVGS 553 (679)
T ss_pred CCCCCceEEEeeceeEEecCCCHHHhcCCcccHHHHHHHHhCCcHHHHHHhccccccccccccccccccccccCCCcHHH
Confidence 456789999999999999999999999999999999999999999999999764211 112236689999
Q ss_pred HHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhccccccc
Q 000617 466 RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEV 545 (1388)
Q Consensus 466 ~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~ 545 (1388)
+|+.||+.||++|++|+||||||||||+.+.|+.||...|++|||++||+|++||+++|||+|++|.+|+.||++|++..
T Consensus 554 ~f~~qL~~L~~~L~~t~~hfIRCIKPN~~k~p~~fd~~~V~~QLr~~GvlE~irirr~Gyp~R~~~~eF~~rY~~L~~~~ 633 (679)
T cd00124 554 QFRTSLDALMATLNSTEPHFIRCIKPNEEKKPNAFDSGKVLQQLRYLGILETIRIRRLGFSVRIPFDEFLSRYRFLAPDL 633 (679)
T ss_pred HHHHHHHHHHHHHhcCCCeEEEEECCCcccCCCccChHHHHHHHHHhchHHHHHHHHccCCceeeHHHHHHHHHHhCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999875
Q ss_pred ccCCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 546 LEGNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 546 ~~~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
.......++.|+.++..+++ ++|++|+||||||++++..||.+|
T Consensus 634 ~~~~~~~~~~~~~il~~~~~~~~~~~vGkTkVFlr~~~~~~LE~~r 679 (679)
T cd00124 634 LEKVSLTKKQVECLLELLGLPKDEWQVGKTKVFLKEGQLSELEKMR 679 (679)
T ss_pred ccccCCcHHHHHHHHHhcCCCccCEEecCCeEEECcCHHHHHhccC
Confidence 44333334449999998876 489999999999999999999765
No 19
>cd01386 MYSc_type_XVIII Myosin motor domain, type XVIII myosins. This catalytic (head) domain has ATPase activity and belongs to the larger group of P-loop NTPases. Myosins are actin-dependent molecular motors that play important roles in muscle contraction, cell motility, and organelle transport. The head domain is a molecular motor, which utilizes ATP hydrolysis to generate directed movement toward the plus end along actin filaments. A cyclical interaction between myosin and actin provides the driving force. Rates of ATP hydrolysis and consequently the speed of movement along actin filaments vary widely, from about 0.04 micrometer per second for myosin I to 4.5 micrometer per second for myosin II in skeletal muscle. Myosin II moves in discrete steps about 5-10 nm long and generates 1-5 piconewtons of force. Upon ATP binding, the myosin head dissociates from an actin filament. ATP hydrolysis causes the head to pivot and associate with a new actin subunit. The release of Pi causes the
Probab=100.00 E-value=3.5e-146 Score=1375.49 Aligned_cols=582 Identities=30% Similarity=0.461 Sum_probs=513.0
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|+++++||||||||||||||||++|+||+|||.+++..+. ...+ ++|+++||||||||||||++||||||||||++|+
T Consensus 80 m~~~~~~QsIiiSGESGAGKTe~tK~i~~yla~~~~~~~~-~~~~-e~i~~~npiLEAFGNAkT~rNdNSSRFGK~i~l~ 157 (767)
T cd01386 80 LLETRRDQSIIFLGRSGAGKTTSCKHALEYLALAAGSVDG-RVSV-EKVRALFTILEAFGNVSTALNGNATRFTQILSLD 157 (767)
T ss_pred HHHcCCCceEEEecCCCCCcHHHHHHHHHHHHhccCCCCc-ccHH-HHHHhhchHHHHhhccCcCCCCCcCcceeEEEEE
Confidence 6788999999999999999999999999999999764321 1234 5799999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCC-CccccCCCCcHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQS-NCYELDGVSDAHEYL 158 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~-~~~~~~~~~d~~~f~ 158 (1388)
||.+|.|+||+|.+|||||||||.|++||||||||||||+ ++.+++++|+|.++..+.+.+.+ .+...++++|+++|.
T Consensus 158 F~~~g~i~Ga~i~~yLLEKSRVv~q~~gERNFHIFYqLlaG~~~~~~~~l~L~~~~~~~~~~~~~~~~~~d~~~D~~~f~ 237 (767)
T cd01386 158 FDQTGQIASASLQTMLLERSRVARRPNGETNFVVFSQLLAGVDGDLRTELHLEQMAESSSFGMGGLSKPEDKQKAAIDFS 237 (767)
T ss_pred ECCCCcEeEEEEEEEecccCceeecCCCCCcchhHHHHHhCCCHHHHHHhcCCCccccchhhcCCCCCCcCcccHHHHHH
Confidence 9999999999999999999999999999999999999999 78899999999876554433332 233467889999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeC
Q 000617 159 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 238 (1388)
Q Consensus 159 ~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 238 (1388)
+|+.||++|||+++++..||+|||||||||||+|.+.. +.+.+.+ ...+..+|.||||++++|.++|+++.+..+
T Consensus 238 ~~~~Al~~lGfs~~e~~~If~iLaaILhLGNi~f~~~~--~~~~~~~---~~~~~~vA~LLgv~~~~L~~al~~~~~~~~ 312 (767)
T cd01386 238 RLQQAMEVLGISEGEQRAIWRVLAAIYHLGAAGATKVA--GRKQFAR---PEWAQKAAELLGCPLEELSSATFKHTLRGG 312 (767)
T ss_pred HHHHHHHHcCCCHHHHHHHHHHHHHHHhccCceeeecC--CccccCC---HHHHHHHHHHhCCCHHHHHHHhcccEEeec
Confidence 99999999999999999999999999999999997622 2223333 346999999999999999999999876655
Q ss_pred Cc-------------eEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCC----
Q 000617 239 EE-------------VITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKC---- 301 (1388)
Q Consensus 239 ~e-------------~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~---- 301 (1388)
.+ .++.++++.+|..+||||||+||++||+|||.+||.+|.++.....+||||||||||+|+.
T Consensus 313 ~~~~~~~~~~~~~~~~~~~~~~~~~A~~~rdalaK~lY~rLF~wiV~~IN~~l~~~~~~~~~IgiLDIfGFE~f~~n~~~ 392 (767)
T cd01386 313 INQMTTGPQRPGLSDTETSSGLKMTAVECLEGMASGLYSELFAAVVSLINRSISSSHHSIASIMLVDTPGFQNPASQGKD 392 (767)
T ss_pred ceeeeccccccccccccccCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeccccccccccccc
Confidence 33 3445678899999999999999999999999999999998766678999999999999984
Q ss_pred --CChHHHHHHhhhhHHHHHHHHHHHHHhHHHHhhcCCccccccc-cChHHHHHHhhcCc--------------cccccc
Q 000617 302 --NSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKP--------------GGIIAL 364 (1388)
Q Consensus 302 --NsfeqlciNyanEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~-~dn~~~idlie~~~--------------~Gil~l 364 (1388)
|||||||||||||||||+|+++||+.||++|.+|||+|+++++ .||++|||||+++| .|||++
T Consensus 393 ~~NsfEQLcINyaNEkLQq~f~~~vF~~Eq~eY~~EGI~~~~~~~~~dn~~~i~lid~~p~~~~~~~~~~~~~~~GIl~l 472 (767)
T cd01386 393 RAATFEELCHNYLQERLQLLFHHRTFVQPLERYAEEGVEVEFDLAEPSPGTTVALVDQAPQQVVVPAGLRAEDARGLLWL 472 (767)
T ss_pred CCCCHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHhhcCCccccccCCCchhhHHHhhcccccccccchhhccCCCchhhh
Confidence 8999999999999999999999999999999999999997655 69999999999865 499999
Q ss_pred chhhhcCCCCChHhHHHHHHHHhhcCCCCCCCC--C----CCCCeEEEeccee--eeeeccCcccccchhh-HHHHHHHH
Q 000617 365 LDEACMFPKSTHETFSQKLCQTFAKNNRFSKPK--L----SRTDFTILHYAGE--VTYQANHFLDKNKDYV-VAEHQALL 435 (1388)
Q Consensus 365 Ldee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~--~----~~~~F~I~H~ag~--V~Y~~~~fl~kN~d~~-~~~~~~ll 435 (1388)
|||||++|++||++|++||++.+++|++|.++. . ....|+|+||||. |+|++.||++||+|.+ +.+++.+|
T Consensus 473 LDEec~~p~~tD~~f~~kl~~~~~~~~~~~~~~~~~~~~~~~~~F~I~HyAG~~~V~Y~~~gfleKNkD~~~~~~~~~ll 552 (767)
T cd01386 473 LDEEALVPGSSDDTFLERLFAAYGDRETRETGLSRLRTCEGPLQFVLFHLLGTNPVLYDVTGWLRRAKPNPAALNAPQLL 552 (767)
T ss_pred hhHhhcCCCCcHHHHHHHHHHHhccCCCcccCccccccCCCCCcEEEEEcCCCCceEecCCCHHHhcCCCCChHHHHHHH
Confidence 999999999999999999999999888887622 1 2468999999995 9999999999999975 58999999
Q ss_pred HhcchhHHHhcCCCCcc-------------ccc----------C--------CCCCcchhHHHHHHHHHHHHHHcccCCe
Q 000617 436 TAAKCSFVAGLFPPLPE-------------ESS----------K--------SSKFSSIGSRFKLQLQSLMETLNATAPH 484 (1388)
Q Consensus 436 ~~S~~~~v~~lf~~~~~-------------~~~----------~--------~~~~~tv~~~f~~sl~~L~~~l~~t~~h 484 (1388)
++|++++|+.||+.... ..+ + ..+.+||+++||.||+.||++|++|+||
T Consensus 553 ~~S~~~~i~~lF~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~tv~~qFk~qL~~Lm~~L~~t~ph 632 (767)
T cd01386 553 QDSKREEINSLFQGRAGLAPVCLGAGAGLEGTSQQALRRSSSIRRTFTSSTAAVKRKSPCVQVKLQVDALIDTLRRSGLH 632 (767)
T ss_pred HhCCcHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHhccCCe
Confidence 99999999999953210 000 0 0134589999999999999999999999
Q ss_pred EEEeeCCCCCCC----------------------CCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccc
Q 000617 485 YIRCVKPNNVLK----------------------PSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILA 542 (1388)
Q Consensus 485 fIrCikPn~~~~----------------------~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~ 542 (1388)
||||||||+.|. |+.||...|++||||+||||+|||+++|||+|++|.+|+.||++|+
T Consensus 633 fIRCIKPN~~k~~~~~~~~~~~~~~~~~~~~~~~p~~fd~~~V~~QLr~~GvlE~iri~r~Gfp~R~~~~~F~~RY~~L~ 712 (767)
T cd01386 633 FVHCYLPQHNGGKAMARTASPSPQQSEDNGVAAEPLALDIPLLRSQLRGSQILEAARLHRLGFPISVPLGEFVRRFGLLA 712 (767)
T ss_pred eEEEeCccccccccccccccccccccccccccccccccCHHHHHHHHHhcccHHHHHHHhcCCcccccHHHHHHHHHhhC
Confidence 999999999874 7899999999999999999999999999999999999999999998
Q ss_pred ccccc------CCCchHHHHHHHHhhcCC--CCceeccceeeecchhhHHHHHHH
Q 000617 543 PEVLE------GNYDDQVACQMILDKKGL--KGYQIGKTKVFLRAGQMAELDARR 589 (1388)
Q Consensus 543 ~~~~~------~~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr~~~~~~Le~~r 589 (1388)
+.... ...|++++|+.||..+++ ++|++|+||||||+++++.||+.|
T Consensus 713 ~~~~~~~~~~~~~~d~r~~~~~il~~~~~~~~~~~iGkTKVFlr~~~~~~LE~~R 767 (767)
T cd01386 713 EGLTKKVGGAGGGADERAAVEEILENLELDKSSYRIGHSQVFFRAGVLSRLEAQR 767 (767)
T ss_pred hhhcccccccccCCCHHHHHHHHHHHcCCCcceEEeecceEEecccHHHHHhccC
Confidence 76321 235889999999999876 489999999999999999999875
No 20
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=100.00 E-value=1.3e-142 Score=1226.39 Aligned_cols=650 Identities=39% Similarity=0.655 Sum_probs=574.7
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|.+-+.+|||||||||||||||++|++++|||.--|+. ..|+++|+.+||||||||||||+||+||||||||++|+
T Consensus 138 Mr~~k~SQSIIVSGESGAGKTEstK~vLrYLces~gsa----g~Iq~rileaNPiLEAFGNAKT~RNNNSSRFGKFveiH 213 (1259)
T KOG0163|consen 138 MRVYKLSQSIIVSGESGAGKTESTKAVLRYLCESWGSA----GPIQTRILEANPILEAFGNAKTLRNNNSSRFGKFVEIH 213 (1259)
T ss_pred HHHHhhcccEEEecCCCCCcchhHHHHHHHHHhccCCC----CcHHHHHhccChHHHHhccchhhccCChhhccceEEEE
Confidence 56667899999999999999999999999999876653 48999999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCc--------------
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNC-------------- 145 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~-------------- 145 (1388)
|+.+|.++|+-+..||||+||||.|+.+|||||||||||| ++++.++.|.|+.|++|+||+.|-.
T Consensus 214 f~dk~~VvGGyvSHYLLEkSRiC~Qaa~ERNYHiFY~LiAGas~dl~~kL~L~~pd~f~YL~rG~t~yFan~~t~~ki~~ 293 (1259)
T KOG0163|consen 214 FDDKGQVVGGYVSHYLLEKSRICRQAAEERNYHIFYQLIAGASPDLRKKLSLGKPDDFRYLKRGCTQYFANAKTEQKIPG 293 (1259)
T ss_pred EcCCCceechhhhHHHHHHhHHHHhhhcccchhHHHHHHcCCCHHHHHHhccCCchhhhHHhcchhhhccCcchhhcCcc
Confidence 9999999999999999999999999999999999999999 8889999999999999999986421
Q ss_pred ------------cccCCCCcHHHHHHHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCc--CcccccccccchHH
Q 000617 146 ------------YELDGVSDAHEYLATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKE--IDSSVIKDEKSRFH 211 (1388)
Q Consensus 146 ------------~~~~~~~d~~~f~~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~--~~~~~~~~~~~~~~ 211 (1388)
..-+-+||..+|..+..||+.+|+++++...||+++|||||||||+|....+ ..+|.+.+ .+...
T Consensus 294 nr~S~~~~~~~~~kD~iidD~~dF~rl~~Al~~~Glsd~Ekl~i~s~vA~vLHLGNieFEE~~ddsrGGC~v~n-~seqs 372 (1259)
T KOG0163|consen 294 NRKSKNHQQKGSLKDPIIDDYQDFHRLEKALKLLGLSDTEKLFIWSTVAAVLHLGNIEFEEIPDDSRGGCQVSN-GSEQS 372 (1259)
T ss_pred cccCccccccCcccCcccccHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHHccccchhcccCcCCCceeccc-Cchhh
Confidence 0112378999999999999999999999999999999999999999986542 22445544 34567
Q ss_pred HHHHHHhcCCCHHHHHHHHhhceEEe-----CCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCe
Q 000617 212 LNMTAELLRCDAQSLEDALIKRVMVT-----PEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKS 286 (1388)
Q Consensus 212 l~~~a~LLgv~~~~L~~~l~~~~~~~-----~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~ 286 (1388)
|..+|+|||++.++|...||.|.+.+ +|..|.+||.+.+|..+||||||++|++||||||.+||.++-. ..+..
T Consensus 373 L~~~a~LLGld~~elr~~L~aRvMqtt~GG~kGTvIrVPLK~~eA~n~RDALaKaiYSkLFD~lV~~iNqsiPF-e~St~ 451 (1259)
T KOG0163|consen 373 LTIAAELLGLDQTELRTGLCARVMQTTKGGFKGTVIRVPLKIHEASNARDALAKAIYSKLFDWLVGRINQSIPF-EKSTF 451 (1259)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHHhccCCccceEEEeeccHHhhcchHHHHHHHHHHHHHHHHHHHhhccccc-ccccc
Confidence 99999999999999999999999864 3447899999999999999999999999999999999999943 35788
Q ss_pred EEEeecccCccCCCCCChHHHHHHhhhhHHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccch
Q 000617 287 IIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLD 366 (1388)
Q Consensus 287 ~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLd 366 (1388)
|||||||.|||-|.+||||||||||+|||||++||+.+++.||+.|.+||++...|+|.|||+||+|||.|..|||+|||
T Consensus 452 fiGVLDiAGFEyf~~NSFEQFCINyCNEKLQ~FFNerILkeEQElYekEGLnv~ei~f~DNqDcIeL~E~K~~GifdlLD 531 (1259)
T KOG0163|consen 452 FIGVLDIAGFEYFAVNSFEQFCINYCNEKLQKFFNERILKEEQELYEKEGLNVPEIEFTDNQDCIELIEAKSNGIFDLLD 531 (1259)
T ss_pred eeEEEeeccceeeecccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCceEeccchhHHHHHHHhccchhhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhhcCCCCChHhHHHHHHHHhhcCCCCCCCCCC----------CCCeEEEecceeeeeeccCcccccchhhHHHHHHHHH
Q 000617 367 EACMFPKSTHETFSQKLCQTFAKNNRFSKPKLS----------RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLT 436 (1388)
Q Consensus 367 ee~~~p~~~d~~~~~kl~~~~~~~~~~~kp~~~----------~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~ 436 (1388)
||.++|+.+++.|..+.+..+++|-+..-||-+ ...|.|+||||.|.|.+..|+|||.|.+...+..|+.
T Consensus 532 EEaklP~~s~qhFT~~vHe~~k~HfRL~~PRkSklksHR~lRDdEG~liRHfAGaVCYeT~~FvEKNnD~LH~SLe~Li~ 611 (1259)
T KOG0163|consen 532 EEAKLPKPSYQHFTARVHESNKNHFRLDLPRKSKLKSHRELRDDEGFLIRHFAGAVCYETEQFVEKNNDALHNSLEGLIE 611 (1259)
T ss_pred hhccCCCcchHHHHHHHHHhhhcceeecCCchhhhhhhhhhccccceeeeecccceeechHHHHHhccHHHHHHHHHHHH
Confidence 999999999999999999998888777777643 2489999999999999999999999999999999999
Q ss_pred hcchhHHHhcCCCCcccccCC--C--CCcchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhcc
Q 000617 437 AAKCSFVAGLFPPLPEESSKS--S--KFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCG 512 (1388)
Q Consensus 437 ~S~~~~v~~lf~~~~~~~~~~--~--~~~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~ 512 (1388)
.|.++|+..||+.....+.++ + ++-|||..||.||..||+.|++|..|||||||||..+.|+.||...++.||.|+
T Consensus 612 es~~~ll~sLF~S~s~t~a~~~~gkL~~iSVGaKFKtQL~~LldKL~stGt~FiRCiKPN~kM~~~~FeGs~iLsQLqCs 691 (1259)
T KOG0163|consen 612 ESDNPLLVSLFPSGSSTSAKQTRGKLKFISVGAKFKTQLSELLDKLESTGTHFIRCIKPNSKMIDRHFEGSAILSQLQCS 691 (1259)
T ss_pred hccchHHHHHccCCCCCccccccceeeEEehhHHHHHHHHHHHHHHHhcCCeeEEeecCccccccccccHHHHHHHhhhc
Confidence 999999999999864332222 2 567999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHHHhhcCCcccchHHHHHhhcccccccccCCCchHHHHHHHHhhcCCC--CceeccceeeecchhhHHHHHHHH
Q 000617 513 GVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKKGLK--GYQIGKTKVFLRAGQMAELDARRA 590 (1388)
Q Consensus 513 gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~ll~~~~~~--~~~iGktkVFlr~~~~~~Le~~r~ 590 (1388)
|+...+++...|||+|-.|.|.+.-|...+|+.+. ..|++-.|+++...+|++ +|+||.||||||+|.++..+.+..
T Consensus 692 Gm~SVL~LMq~GyPSR~~F~dLYamYkk~lPpkLa-rLdpRlFck~lF~aLgL~q~DfkFGlTKVFFr~GKFaEFDqiMk 770 (1259)
T KOG0163|consen 692 GMISVLELMQHGYPSRTSFADLYAMYKKVLPPKLA-RLDPRLFCKALFQALGLDQNDFKFGLTKVFFRPGKFAEFDQIMK 770 (1259)
T ss_pred cHHHHHHHHhcCCCccccHHHHHHHHHhhCCHhhh-cCChHHHHHHHHHHhCCCcccccccceeEeecCcchHHHHHHHh
Confidence 99999999999999999999999999987776544 468999999999999885 899999999999999999998766
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHhhHHhhh
Q 000617 591 EVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLRREAAALKIQTNFRAYVAQRSYLTVRS 666 (1388)
Q Consensus 591 ~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg~laR~~~~~~r~~~Aai~IQ~~~Rg~~~R~~y~~~r~ 666 (1388)
..-...+-.|+ .+..|+.|.++.+..-++..+-..- .+. .-|..+++++|+.+|||++|++++....
T Consensus 771 sDPe~m~~lv~-kVn~WLv~sRWkk~q~~a~sVIKLk----NkI----~yRae~v~k~Q~~~Rg~L~rkr~~~ri~ 837 (1259)
T KOG0163|consen 771 SDPETMLELVA-KVNKWLVRSRWKKSQYGALSVIKLK----NKI----IYRAECVLKAQRIARGYLARKRHRPRIA 837 (1259)
T ss_pred cCHHHHHHHHH-HHHHHHHHhHHHHhhhhhhheeehh----hHH----HHHHHHHHHHHHHHHHHHHHhhhchHHH
Confidence 55555555554 4577898888876654433221110 011 1134678899999999999998876543
No 21
>PF00063 Myosin_head: Myosin head (motor domain); InterPro: IPR001609 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. The globular head is well conserved, some highly-conserved regions possibly relating to functional and structural domains []. The rod-like tail starts with an invariant proline residue, and contains many repeats of a 28 residue region, interrupted at 4 regularly-spaced points known as skip residues. Although the sequence of the tail is not well conserved, the chemical character is, hydrophobic, charged and skip residues occuring in a highly ordered and repeated fashion [].; GO: 0003774 motor activity, 0005524 ATP binding, 0016459 myosin complex; PDB: 1LKX_A 2V26_A 2BKI_A 3L9I_A 2BKH_A 2X51_A 2VB6_A 2VAS_A 1OE9_A 1W8J_A ....
Probab=100.00 E-value=2.8e-140 Score=1347.26 Aligned_cols=575 Identities=49% Similarity=0.843 Sum_probs=509.3
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCC-CCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEI 79 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~-~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l 79 (1388)
|.++++|||||||||||||||+++|+||+||+.+++... .....++++|+++||||||||||||++|+||||||||++|
T Consensus 79 m~~~~~~Q~IiisGeSGsGKTe~~k~il~~L~~~~~~~~~~~~~~i~~~i~~~~~iLeaFGnAkT~~N~nSSRfgk~~~l 158 (689)
T PF00063_consen 79 MLRTRQNQSIIISGESGSGKTETSKLILRYLASLSSSSSSSKSSSIEKKILAANPILEAFGNAKTPRNDNSSRFGKFIEL 158 (689)
T ss_dssp HHHHTSEEEEEEEESTTSSHHHHHHHHHHHHHHHSSSSSSTCTTHHHHHHHHHHHHHHHHHEEEESSETTEESSEEEEEE
T ss_pred ccccccccceeeccccccccccchHHHHHHHhhhcccccccccccccceEEeccchhhhhcccccccCCcccccceEEEE
Confidence 667899999999999999999999999999999986543 2346899999999999999999999999999999999999
Q ss_pred EEcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCccccCCCCcHHHHH
Q 000617 80 QFDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYL 158 (1388)
Q Consensus 80 ~f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~ 158 (1388)
+||.+|.++||+|.+||||||||+.+++||||||||||||+ ++++++++|+|.++.+|+||+++++..+++.+|+++|.
T Consensus 159 ~f~~~~~~~g~~i~~ylLEksRv~~~~~~ErnfhiFYqll~G~~~~~~~~l~L~~~~~~~yL~~~~~~~~~~~~d~~~f~ 238 (689)
T PF00063_consen 159 QFDDSGQIVGAKIETYLLEKSRVVRQPPGERNFHIFYQLLAGADDEERKELRLNDASDYRYLNQSGCSTIPGIDDAEEFQ 238 (689)
T ss_dssp EEETTSSEEEEEEEEEEE-GGGGT---TTS-SBHHHHHHHHTSSHHHHHHTT-S-GGGSTTCCTTSSSSBTTCTHHHHHH
T ss_pred EecccccccccceecccccccceeeccccccccchhhhhhhccchhhhhcccccccccccceecccccccCCccCHHHhh
Confidence 99999999999999999999999999999999999999999 78889999999999999999999999999999999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEEeC
Q 000617 159 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMVTP 238 (1388)
Q Consensus 159 ~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 238 (1388)
.+++||++|||+++++..||+|||||||||||+|....+.+.+.+.+. ..++.+|.||||++++|.++||++.+.++
T Consensus 239 ~l~~al~~lg~~~~e~~~I~~iLaaILhLGni~F~~~~~~~~~~~~~~---~~l~~~a~LLgv~~~~L~~~l~~~~~~~~ 315 (689)
T PF00063_consen 239 ELKDALKTLGFSDEEIDDIFRILAAILHLGNIEFVEDESDESAEVENS---EELQKAAELLGVDSEELEKALTTRTIKVG 315 (689)
T ss_dssp HHHHHHHHTT--HHHHHHHHHHHHHHHHHTTSSEEEETTSSSEEESTS---HHHHHHHHHTTS-HHHHHHHHHSEEEEST
T ss_pred hhhhhhccccCchhHHHHHHHHHHHHhhhccccccccccccceeechH---HHHHHhhhhcCCCHHHHHHHHhhcccccc
Confidence 999999999999999999999999999999999987664444444443 35999999999999999999999999999
Q ss_pred CceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCC-CCCeEEEeecccCccCCCCCChHHHHHHhhhhHHH
Q 000617 239 EEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDP-DSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQ 317 (1388)
Q Consensus 239 ~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~-~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq 317 (1388)
+|.+++|+++++|..+||+|||+||++||+|||++||.+|++.. ....+||||||||||+|..|||||||||||||+||
T Consensus 316 ~e~~~~~~~~~~a~~~rdalak~LY~~LF~wIV~~iN~~L~~~~~~~~~~IgILDi~GFE~~~~N~fEQLciNyanErLq 395 (689)
T PF00063_consen 316 GETVTKPLSVEQASDARDALAKALYSRLFDWIVERINSALSPSESENSSSIGILDIFGFENFSVNSFEQLCINYANERLQ 395 (689)
T ss_dssp TSEEEEE-BHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--SS-S-SEEEEEEEEE-B---SSB-HHHHHHHHHHHHHH
T ss_pred ccccccccchhhhhhhhhhhhhhhhhHHHHHHHHhhhhccccccccccccCcccCccccccccccccccceeeecccccc
Confidence 99999999999999999999999999999999999999999876 67889999999999999999999999999999999
Q ss_pred HHHHHHHHHHhHHHHhhcCCccccccc-cChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHh-hcCCCCCC
Q 000617 318 QHFNQHVFKMEQEEYTREEINWSYIEF-IDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTF-AKNNRFSK 395 (1388)
Q Consensus 318 ~~f~~~~f~~eq~~y~~E~i~~~~i~~-~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~-~~~~~~~k 395 (1388)
++|++++|+.||++|.+|||+|+.++| .||++|||||+++|.|||++|||||++|+++|++|++++...+ ++++.|.+
T Consensus 396 ~~f~~~~f~~e~~~y~~EgI~~~~i~~~~dn~~~ldLi~~~~~Gil~lLdee~~~~~~sd~~fl~kl~~~~~~~~~~~~~ 475 (689)
T PF00063_consen 396 QFFNQHIFKSEQEEYKEEGIDWPFIDFNPDNQPCLDLIEKKPKGILSLLDEECLLPRGSDESFLEKLLKRHSGKHPSFVK 475 (689)
T ss_dssp HHHHHHHHHHHHHHHHHTTSSCSCS-GCGHHHHHHHHHHSSTTSHHHHHHHHCTSTTS-HHHHHHHHHHHHTTTSTTEEC
T ss_pred ceeeeecccccccccccccccccccccccCchhhhhhhccccCCHHHHhhhhhhcccchhhHHHHHHHhhcccCCCcccc
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999 88899988
Q ss_pred CC----CCCCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCcc--------------c----
Q 000617 396 PK----LSRTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPE--------------E---- 453 (1388)
Q Consensus 396 p~----~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~--------------~---- 453 (1388)
|+ .....|+|+||||+|+|+++||++||+|.++++++++|+.|+++||+.||..... .
T Consensus 476 ~~~~~~~~~~~F~I~HyaG~V~Y~v~gfleKNrD~l~~~~~~ll~~S~n~~v~~lf~~~~~~~~~~~~~~~~~~~~~~~~ 555 (689)
T PF00063_consen 476 PRFSRSTSKSSFTIKHYAGDVTYDVEGFLEKNRDPLSQDFVSLLRSSTNSFVSSLFSSEATATSSSSSSLSRRSSSSSTQ 555 (689)
T ss_dssp TSSSTSSTTSCEEEEETTEEEEEE-TTHHHHHHE-S-HHHHHHHHTSSSHHHHHHTHSHHH---S-S-S-BTTTTCCCTT
T ss_pred cccccccCCCceEeecccCcceeccccccccccchHHHHHHHHHHhCcCccccccccccccccccccccccccccccccc
Confidence 86 3678999999999999999999999999999999999999999999999976431 0
Q ss_pred ---ccCCCCCcchhHHHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccc
Q 000617 454 ---SSKSSKFSSIGSRFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRT 530 (1388)
Q Consensus 454 ---~~~~~~~~tv~~~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~ 530 (1388)
.....+.+||+++|+.||+.||++|++|+||||||||||+.+.|+.||...|++|||++||+|++||++.|||+|++
T Consensus 556 ~~~~~~~~~~~tv~~qf~~sL~~L~~~L~~t~~hfIrCIkPN~~~~~~~FD~~~V~~QLr~~gile~vri~~~Gyp~r~~ 635 (689)
T PF00063_consen 556 SRSSGSKKKKSTVSSQFRSSLDELMDTLRSTQPHFIRCIKPNDQKKPNQFDSKLVLRQLRYSGILETVRIRRQGYPVRLT 635 (689)
T ss_dssp SSCCCGGTCSSBHHHHHHHHHHHHHHHHCTSEEEEEEEE-SSSS--TT---HHHHHHHHHHTTHHHHHHHHHCSSSEEEE
T ss_pred ccccccccccccccccccccHHHHHhhhhhcccceEEEeccccccccccccchheehhhhhhhhhhhhhhhhcccceecc
Confidence 00112458999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHhhcccccccccC----CCchHHHHHHHHhhcCC--CCceeccceeeec
Q 000617 531 FYEFVNRFGILAPEVLEG----NYDDQVACQMILDKKGL--KGYQIGKTKVFLR 578 (1388)
Q Consensus 531 ~~~F~~ry~~l~~~~~~~----~~d~~~~~~~ll~~~~~--~~~~iGktkVFlr 578 (1388)
|.+|++||++|++..... ..++++.|+.||+.+++ +.|++|+||||||
T Consensus 636 ~~eF~~RY~~L~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~iG~TkVFLk 689 (689)
T PF00063_consen 636 FDEFLRRYKCLLPSSSSSSDSSKEDDKEACEALLEQLDLESSDYQIGKTKVFLK 689 (689)
T ss_dssp HHHHHHHHGGGSTTCSHSS--HCSSHHHHHHHHHHHTTSEGTCEEEESSEEEEC
T ss_pred hhhhhhhhceechhhcccccccCCCHHHHHHHHHHhCCCCccCEEECCcEEEEC
Confidence 999999999999875432 46899999999999987 5899999999997
No 22
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=100.00 E-value=6.7e-93 Score=892.13 Aligned_cols=670 Identities=36% Similarity=0.536 Sum_probs=576.1
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhccCCCCcCCCCCcccceEEEE
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRFGKFVEIQ 80 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafGnakT~~N~nSSRfgk~~~l~ 80 (1388)
|++...||||++|||||||||++|+++++||+.++.. ....++++|+.++|+||+||||+|.+||||||||||+++.
T Consensus 142 m~~~~~~QcivisGesgsGktest~l~~~~Ls~Lsq~---~~~~~e~~il~a~~llEafgnA~t~~ndnssrfgk~i~~~ 218 (1062)
T KOG4229|consen 142 MLREKEDQCIVISGESGSGKTESTKLLWQFLSILSQG---NNSPVEQLILSANPLLEAFGNAKTPRNDNSSRFGKYIKVN 218 (1062)
T ss_pred hhhhccceeEEEecccCCCCchhhHHHHHHHHHHhcC---CCCchhhhhhcchHHHHHhcccCCcccCchhhhhheEEec
Confidence 6778899999999999999999999999999999831 1357889999999999999999999999999999999999
Q ss_pred EcCCCccccccccccccccccccccCCCCCcchhhhhhhc-CCHhhHhhcCCCCCCccccccCCCcccc-CCCCcHHHHH
Q 000617 81 FDKNGRISGAAIRTYLLERSRVCQISDPERNYHCFYLLCA-APHEDIAKYKLGSPKSFHYLNQSNCYEL-DGVSDAHEYL 158 (1388)
Q Consensus 81 f~~~~~i~ga~i~tylLEksRv~~~~~~ErnfHiFYql~~-~~~~~~~~~~L~~~~~~~yl~~~~~~~~-~~~~d~~~f~ 158 (1388)
|.+.|.|.||.+.-||||||||+.|+.+||||||||++++ .+..+++.+.|+.+.+|.||+++.+..+ ++.++.++|.
T Consensus 219 ~~~~g~i~Gaki~~yllEKsr~~~q~~~e~nyhify~~~agl~~~e~~~~~l~~~e~y~yL~~~~~~~~~d~~~~~~~~~ 298 (1062)
T KOG4229|consen 219 FRKTGIIEGAKIVEYLLEKSRLVIQAGGERNYHIFYYLLAGLSENELKAFVLGEAENYEYLEQGALFTISDGEDDVAQFI 298 (1062)
T ss_pred cccCCCCCcchHHHHHHHHHHHHHhcCCCcccccchhheeccchhhhhHHhhcCCCCHHHhhccccccccchHHHHHhHH
Confidence 9999999999999999999999999999999999999999 6778999999999999999999999999 9999999999
Q ss_pred HHHhhhhhcCCCHHHHHHHHHHHHHHHHhcCcccccCC--cCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhceEE
Q 000617 159 ATRRAMDIVGISDQEQEAIFRVVAAILHLGNIDFAKGK--EIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRVMV 236 (1388)
Q Consensus 159 ~~~~al~~lgi~~~~~~~i~~ilaaILhLGni~f~~~~--~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~~~ 236 (1388)
.+..||..+||+.+++..||+++|||||+|||.|.... ..|...+.+ ..+++.+|.||+++.+.|.++++.++.+
T Consensus 299 ~l~~~m~v~~f~~~~~~si~~~la~il~~gni~~~~~~~~~~d~~~v~~---~~~v~~vA~lL~~~~~~l~~alt~~~~~ 375 (1062)
T KOG4229|consen 299 RLEAAMSVVGFTDKVLGSIFKSLAAILHIGNISYIKFALDQQDSAEVEN---EEAVERVACLLLIKEKLLQEALTARVNV 375 (1062)
T ss_pred HHHHHHHHhccchhHHHHHHHhcccceeecceeHHhhhcccccchhccc---chHHHHHHHHhhcCHHHhhhhhccccee
Confidence 99999999999999999999999999999999997532 233444443 4579999999999999999999999999
Q ss_pred eCCceEeccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCC--CCeEEEeecccCccCCCCCChHHHHHHhhhh
Q 000617 237 TPEEVITRTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPD--SKSIIGVLDIYGFESFKCNSFEQFCINFTNE 314 (1388)
Q Consensus 237 ~~~e~~~~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~--~~~~IgiLDi~GFe~f~~NsfeqlciNyanE 314 (1388)
+.++.+..+++.++|..+||++||.||++||.|||.+||..+..+.. ....||||||||||+|..|||||+|||||||
T Consensus 376 ~~ge~~~~~l~~~~A~d~rda~ak~ly~~lf~~iv~rIn~~~~~~~~~~~~~~IgiLdiFgfE~f~~nsfEq~~in~Ane 455 (1062)
T KOG4229|consen 376 TRGELLLAPLLVERAVDVRDAMAKTLYGRLFDWIVLRINAALSPESDISDILSIGILDIFGFENFERNSFEQLCINLANE 455 (1062)
T ss_pred eehhhhhhhhhHHHhccCchHHHHHHHHHHHHHHHhhHHhccCccccccccceeehhhhhcccchhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999976654 3689999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhHHHHhhcCCccccccccChHHHHHHhhcCcccccccchhhhcCCCCChHhHHHHHHHHhhcCCCCC
Q 000617 315 KLQQHFNQHVFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIALLDEACMFPKSTHETFSQKLCQTFAKNNRFS 394 (1388)
Q Consensus 315 kLq~~f~~~~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~lLdee~~~p~~~d~~~~~kl~~~~~~~~~~~ 394 (1388)
+||++|++|||.+||+||..|+|+|..|.|.||++|+|+|..||.||+.+||||+.+|+++|.+++.|+..+++.+..+.
T Consensus 456 ~lQ~~fnqhIf~~Eq~ey~~e~I~w~~i~~~dN~~~ldli~~kp~gil~liDees~fP~~td~tl~~k~~~q~~~~~~y~ 535 (1062)
T KOG4229|consen 456 QLQYYFNQHIFALEQEEYDNESIDWRNIEFADNRRRLDLISPKPMGILSLIDEESRFPKATDQTLLLKLNMQHGSNNLYV 535 (1062)
T ss_pred HHHHHHHHHHHHHhHHHhhhcCCCeeeeeeeeccchhhhhccCccchhheecccCcCCchHHHHHHHHhhhhhhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999888887
Q ss_pred CCCCC-CCCeEEEecceeeeeeccCcccccchhhHHHHHHHHHhcchhHHHhcCCCCccccc------------------
Q 000617 395 KPKLS-RTDFTILHYAGEVTYQANHFLDKNKDYVVAEHQALLTAAKCSFVAGLFPPLPEESS------------------ 455 (1388)
Q Consensus 395 kp~~~-~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~~~~~~ll~~S~~~~v~~lf~~~~~~~~------------------ 455 (1388)
.|+.. .+.|+|.||||.|.|++.||++||+|+++.++.+++++|.+.++..++...+....
T Consensus 536 ~~k~~~e~~f~I~Hyagkv~y~~~~flekNrD~~~~d~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~ra~~~~~~~~~~~ 615 (1062)
T KOG4229|consen 536 FPKSRVETVFGITHYAGKVQYNIRGFLEKNRDTVRNDLVNLLRSSDESLLRQLVNGDPTAVSRWFELRALKVAMPVPLEV 615 (1062)
T ss_pred cccccccceeeeeeecceehhhhhhHHHhhhhhhhhhHHhhcccccchhhcccCCCCCccCCcchhhhhhcccccccchh
Confidence 77654 56999999999999999999999999999999999999998888766532110000
Q ss_pred -------CC-----C---------CCcc----------------------------------------------------
Q 000617 456 -------KS-----S---------KFSS---------------------------------------------------- 462 (1388)
Q Consensus 456 -------~~-----~---------~~~t---------------------------------------------------- 462 (1388)
+. + ...+
T Consensus 616 ~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~ 695 (1062)
T KOG4229|consen 616 TLRRPVRKTLTADSSRSAPETTNCLPDKVLPEDRPSLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRG 695 (1062)
T ss_pred hhccccccccccccccchHHHHHhhhccccccCChhhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcc
Confidence 00 0 0000
Q ss_pred -------------------------------------------------------------------------------h
Q 000617 463 -------------------------------------------------------------------------------I 463 (1388)
Q Consensus 463 -------------------------------------------------------------------------------v 463 (1388)
+
T Consensus 696 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~ 775 (1062)
T KOG4229|consen 696 STATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPRPDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERV 775 (1062)
T ss_pred cccCCCCCCccccccccchhhhcccccccccCCCCHHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchh
Confidence 0
Q ss_pred hH----------------HHHHHHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCc
Q 000617 464 GS----------------RFKLQLQSLMETLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPT 527 (1388)
Q Consensus 464 ~~----------------~f~~sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~ 527 (1388)
+. ++......++..+....+.|++|++-|-.+....|+...|..|+++.|+++...+...+|+.
T Consensus 776 t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~ 855 (1062)
T KOG4229|consen 776 TQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAKELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFA 855 (1062)
T ss_pred hhHHHHHhhccccCccccccchhhccchhhhhhhhHHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccc
Confidence 11 12223334566666677788888888866677789999999999999999999999999999
Q ss_pred ccchHHHHHhhcccccccccCCCchHHHHHHHHhhc--CCCCceeccceeeecchhhHHHHH-HHHhhhhhHHHHHHHHH
Q 000617 528 RRTFYEFVNRFGILAPEVLEGNYDDQVACQMILDKK--GLKGYQIGKTKVFLRAGQMAELDA-RRAEVLGNAARKIQRQT 604 (1388)
Q Consensus 528 r~~~~~F~~ry~~l~~~~~~~~~d~~~~~~~ll~~~--~~~~~~iGktkVFlr~~~~~~Le~-~r~~~l~~aa~~IQ~~~ 604 (1388)
.+++.+|...+++..+.... .........+ +.++++.|.+++|+.......++. ...+....-+...|+++
T Consensus 856 ~i~~~~~~~~~~i~~~~~~~------~v~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~ 929 (1062)
T KOG4229|consen 856 EISPQDSVNQSRIGLPETVD------TVADEEFSTLSCNADTIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWF 929 (1062)
T ss_pred cccchhccccccccCCccch------hhchhheeecccCccchhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHH
Confidence 99999999999988773211 1111122212 346899999999998876654433 22222222367789999
Q ss_pred hhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH-HhHhHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHH
Q 000617 605 RTYIARKEFILLRNAAVILQSFLRGEMARKLYEQ-LRREAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 683 (1388)
Q Consensus 605 R~~~~Rk~~~~~r~aai~iQa~~Rg~laR~~~~~-~r~~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~ 683 (1388)
+....|+.+.++..+.+.+| |++++.|+.... .....+++-+|..|+.+..+..+...+.+.+.+|..+++...+..
T Consensus 930 ~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~ 1007 (1062)
T KOG4229|consen 930 RLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVAAASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMI 1007 (1062)
T ss_pred HhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhhhhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhh
Confidence 99999999999999999999 888888774442 223467888999999999999999999999999999998876665
Q ss_pred H
Q 000617 684 F 684 (1388)
Q Consensus 684 ~ 684 (1388)
+
T Consensus 1008 ~ 1008 (1062)
T KOG4229|consen 1008 F 1008 (1062)
T ss_pred H
Confidence 4
No 23
>KOG1892 consensus Actin filament-binding protein Afadin [Cytoskeleton]
Probab=99.97 E-value=4.9e-30 Score=303.09 Aligned_cols=263 Identities=18% Similarity=0.365 Sum_probs=217.9
Q ss_pred HHHHHHHHHHHHhhhhcc-CCccccchhhHHHHHHHHHHHHHhhhcCCCCCCcccccCCccchhhhcccccCCCCCCCCC
Q 000617 1016 TSIFDRIIQTISGAIEVH-DNNDRLSYWLSNASTLLLLLQRTLKASGAASLTPQRRRSTSSSLLGRMSQGLRASPQSAGI 1094 (1388)
Q Consensus 1016 ~~ll~~ii~~I~~~v~~~-~d~~~l~fWLSN~~~Ll~~lq~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 1094 (1388)
..||.++.+.++.+|..+ ++-..|+|||+|++++|||+++.-. +
T Consensus 595 i~f~~~~~s~~~~viQeq~~~~~~LaFWmANaSEflhfik~Dr~-----------------------------------l 639 (1629)
T KOG1892|consen 595 IAFVNKMVSMMEGVIQEQKNIAGALAFWMANASEFLHFIKQDRD-----------------------------------L 639 (1629)
T ss_pred HHHHHHHHHHHHHHHHHhhcccchhHHhhcCHHHHHHHHHhccc-----------------------------------h
Confidence 689999999999999987 4445999999999999999998300 0
Q ss_pred cccccccccccccchhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhcCCCCCccccccCCCcchhhhhh
Q 000617 1095 PFLNSRILSGLDDLRQVEAKYPALLFKQQLTAFLEKIYGMIRDNLKKEISPLLGLCIQAPRTSRASLIKGRSQANAVAQQ 1174 (1388)
Q Consensus 1095 ~~~~~~l~~~~~~~~~v~~~~~~~~~kqqL~~l~~~iy~~l~~~~~~~l~~~L~~~i~~~~~~~~~~~~~~~~~~~~~~~ 1174 (1388)
. . + .+.-+.-|..+|+.+|..|+.|++.+|++.+...+.-. .
T Consensus 640 s--~------------~-----~~~aq~vla~~vq~aFr~LV~clqsel~~~~~afLden-~------------------ 681 (1629)
T KOG1892|consen 640 S--R------------I-----TLDAQDVLAHLVQMAFRYLVHCLQSELNNYMPAFLDEN-S------------------ 681 (1629)
T ss_pred h--h------------e-----ehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhc-c------------------
Confidence 0 0 0 11224559999999999999999999999775444211 0
Q ss_pred hhhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhc--CCCCCcchhhHHhhchhHHHHHHhhc
Q 000617 1175 ALIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR--RECCSFSNGEFVKAGLAELEQWCHDS 1252 (1388)
Q Consensus 1175 ~~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r--~~~cs~s~G~qIr~nls~LE~W~~~~ 1252 (1388)
.......+||.+|+..|.+|+.|+|+..|+.|+|+|||+|||+++||+|+.. ..+|+-.||--|++.|..||.||...
T Consensus 682 ~~~~a~gdVlh~L~~aM~llRrCrvNAALTIQLfsqLfH~iN~~~FN~lVt~~~s~~cs~~wGk~~~~rl~~ie~waErq 761 (1629)
T KOG1892|consen 682 LQRPAIGDVLHTLTGAMSLLRRCRVNAALTIQLFSQLFHFINMWLFNRLVTDPDSGLCSHYWGKIIRQRLGHIEAWAERQ 761 (1629)
T ss_pred ccCccccchHHHhHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHhhhhcccCchhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 1123456899999999999999999999999999999999999999999998 67999999999999999999999999
Q ss_pred CcccccchHHHhHHHHHHHHHHhhcCCCcCCHHHHHhccCCCCCHHHHHHHHhcCccCCCCCCCCCHHHHHHHHhhhhhc
Q 000617 1253 TEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYWDDKYGTHSVSSEVISSMRVMMMDE 1332 (1388)
Q Consensus 1253 ~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Qi~kiL~~Y~~d~~e~~~v~~~~i~~v~~~~~~~ 1332 (1388)
|++.+++ |||..|+||++||+++|....|...+ ...|.+||+.|+.+||..|++++.|+ ++|.+++..+..+....
T Consensus 762 GlElAAd--CHL~ri~Qaa~lL~~~K~a~ddi~~l-~stCfkLNSLQ~~alLq~~~~~~~e~-~~p~dlvd~v~r~AE~~ 837 (1629)
T KOG1892|consen 762 GLELAAD--CHLSRIVQAATLLTMDKYAPDDIPNL-NSTCFKLNSLQLQALLQNYHCAPDEP-FIPTDLVDNVVRVAENT 837 (1629)
T ss_pred cchHhhh--ccHHHHHHHHHHHhccccChhhHHhh-ccchhhcchHHHHHHHhcCCCCCCCC-CCchHHHHHHHHHHHhh
Confidence 9988888 99999999999999997666666666 68999999999999999999999995 99999999986544322
Q ss_pred c-----ccCCCCcccccCCCCCCccccc
Q 000617 1333 S-----NNAVSSSFLLDDDSSIPFTVDD 1355 (1388)
Q Consensus 1333 ~-----~~~~~~~lllD~~~~~Pf~~~~ 1355 (1388)
. .++...+|--+++..+||.+|+
T Consensus 838 ADeLtr~DGreV~LEEspeL~LpfLlP~ 865 (1629)
T KOG1892|consen 838 ADELTRSDGREVQLEESPELQLPFLLPE 865 (1629)
T ss_pred hhHhhhccCceeecccCcccccceeecC
Confidence 1 1222345667888888999887
No 24
>PF01843 DIL: DIL domain; InterPro: IPR018444 Dilute encodes a novel type of myosin heavy chain, with a tail, or C-terminal, region that has elements of both type II (alpha-helical coiled-coil) and type I (non-coiled-coil) myosin heavy chains. The DIL non alpha-helical domain is found in dilute myosin heavy chain proteins and other myosins. In mouse the dilute protein may play a role in the elaboration, maintenance, or function of cellular processes of melanocytes and neurons []. The MYO2 protein of Saccharomyces cerevisiae is implicated in vectorial vesicle transport and is homologous to the dilute protein over practically its entire length [].; PDB: 3MMI_B 2F6H_X.
Probab=99.94 E-value=5.9e-28 Score=235.05 Aligned_cols=105 Identities=36% Similarity=0.653 Sum_probs=88.3
Q ss_pred HHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHhhchhHHHHHHhhcCcccccchHHHhHHHHHHHHHHhhcCCCcCCHH
Q 000617 1206 KVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEEFAGSAWDELRHIRQAVGFLVIHQKPKKTLK 1285 (1388)
Q Consensus 1206 Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~ 1285 (1388)
|+|+|+|||||+.+||+||.|+++|+|++|+|||+||+.||+||+++|.+.. ++++|.|++||++|||++|++..|++
T Consensus 1 Q~f~qlf~~i~~~~fN~ll~~~~~~~~~~g~qi~~nls~l~~W~~~~~l~~~--~~~~l~~l~Qa~~lL~~~k~~~~d~~ 78 (105)
T PF01843_consen 1 QLFSQLFHYINASLFNSLLLRRKYCSWSKGVQIRYNLSELEDWARSHGLEEA--AEEHLQPLSQAANLLQLRKSTLQDWD 78 (105)
T ss_dssp HHHHHHHHHHHHHHHHHHHCHSS-B-HHHHHHHHHHHHHHHHCCCCTTSTTH---HHHCHHHHHHHHHCCC--SSHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHHCCCCccccccHHHHHHHHHHHHHHHHhcccchh--HHHHHHHHHHHHHHHHhcCcchhHHH
Confidence 8999999999999999999999999999999999999999999999995433 67999999999999999765566555
Q ss_pred HHHhccCCCCCHHHHHHHHhcCccCCCC
Q 000617 1286 EITNDLCPVLSIQQLYRISTMYWDDKYG 1313 (1388)
Q Consensus 1286 ~i~~~~C~~L~~~Qi~kiL~~Y~~d~~e 1313 (1388)
.+ +++||+|||.||++||++|+||+||
T Consensus 79 ~~-~~~c~~Ln~~Qi~~iL~~Y~~~~~e 105 (105)
T PF01843_consen 79 SL-RETCPSLNPAQIRKILSNYQPDDYE 105 (105)
T ss_dssp HH-CCCTTTS-HHHHHHHHCCB---TTS
T ss_pred HH-HHHcccCCHHHHHHHHHhCCCcCCC
Confidence 55 7999999999999999999999987
No 25
>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]
Probab=98.99 E-value=1.5e-06 Score=118.04 Aligned_cols=729 Identities=15% Similarity=0.146 Sum_probs=336.4
Q ss_pred ccccccccccccccCCCCCcchhhhhhhc-CC----HhhHhhcCCCCCCccccccCCCccccCCCCcHHHHHHHHhhhhh
Q 000617 92 IRTYLLERSRVCQISDPERNYHCFYLLCA-AP----HEDIAKYKLGSPKSFHYLNQSNCYELDGVSDAHEYLATRRAMDI 166 (1388)
Q Consensus 92 i~tylLEksRv~~~~~~ErnfHiFYql~~-~~----~~~~~~~~L~~~~~~~yl~~~~~~~~~~~~d~~~f~~~~~al~~ 166 (1388)
...+...-+..+.++++.++||-|+.+.- .. ......|-| +..+...|+ ++..+..-|..+..+.
T Consensus 217 npvLeaFGNa~tvrn~NssRFgkfirI~F~~~G~i~~a~Ie~yLL---EKsRv~~Q~-----~~Er~yhiFyqlls~~-- 286 (1930)
T KOG0161|consen 217 NPVLEAFGNAKTVRNDNSSRFGKFIRIHFDATGKIAGADIETYLL---EKSRVIRQA-----PGERNYHIFYQLLSGA-- 286 (1930)
T ss_pred CchHHHhcChhhhcCCCCcccceeEEEecCCCCccchhhHHHHHH---HHhHhhccC-----cchhHHHHHHHHHhCC--
Confidence 34455667888999999999999999876 22 222222222 122223332 2222333344333322
Q ss_pred cCCCHHHHHHHHHHHHHHHH-hcCcccccCCcCcccccccccchHHHHHHHHhcCCCHHHHHHHHhhce--EEeCCceEe
Q 000617 167 VGISDQEQEAIFRVVAAILH-LGNIDFAKGKEIDSSVIKDEKSRFHLNMTAELLRCDAQSLEDALIKRV--MVTPEEVIT 243 (1388)
Q Consensus 167 lgi~~~~~~~i~~ilaaILh-LGni~f~~~~~~~~~~~~~~~~~~~l~~~a~LLgv~~~~L~~~l~~~~--~~~~~e~~~ 243 (1388)
++......+ +-+ .-+..|......--..+.|......+..+-..||+++++....+---. +..++=.+.
T Consensus 287 ---~~~l~~~l~-----L~~~~~~Y~f~~~~~~~i~g~dd~eef~~t~~a~~ilgfs~~E~~~~~~i~sailhlGn~~f~ 358 (1930)
T KOG0161|consen 287 ---DPELKEELL-----LSDNVKDYKFLSNGESTIPGVDDAEEFQETDEAMDILGFSEEEKISIFRIVSAILHLGNIKFK 358 (1930)
T ss_pred ---CHHHHHHHh-----hcccchhhhhhccccCCCCCcchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHhcchhhh
Confidence 111111100 000 011223222111000111212222456667899999887654432211 112221111
Q ss_pred ccCChhhHHHhHHHHHHHHHHHHHHHHHHhhhhccCCCCCCCeEEEeecccCccCCCCCChHHHHHHhhhhHHHHHHHHH
Q 000617 244 RTLDPVNAVASRDALAKTIYSRLFDWIVEKINISIGQDPDSKSIIGVLDIYGFESFKCNSFEQFCINFTNEKLQQHFNQH 323 (1388)
Q Consensus 244 ~~~~~~~a~~~rdalak~lY~~LF~wiV~~iN~~l~~~~~~~~~IgiLDi~GFe~f~~NsfeqlciNyanEkLq~~f~~~ 323 (1388)
..-..++|.......|-.+-. |+..=+.-...++..+ .....+-.++.|+. .+| .+++=+-|...-+..
T Consensus 359 ~~~~~~qa~~~~~~~a~ka~~-llg~~~~~~~~al~~p--riKvg~e~v~k~q~------~~q--~~~~v~alAk~lYer 427 (1930)
T KOG0161|consen 359 QEPREEQAEFDNTEVADKACH-LLGINVEEFLKALLRP--RIKVGREWVSKAQN------VEQ--VLFAVEALAKALYER 427 (1930)
T ss_pred ccccccccCCCCchHHHHHHH-HcCCCHHHHHHHhccc--ceeccchhhhhcch------HHH--HHHHHHHHHHHHHHH
Confidence 111233333332222222111 2222222222333221 12234456666664 344 777778888777777
Q ss_pred HHHHhHHHHhhcCCccccccccChHHHHHHhhcCccccccc--chhhhcCCCCChHhH-HHHHHHHhhcCCCCCCCC---
Q 000617 324 VFKMEQEEYTREEINWSYIEFIDNQDVLDLIEKKPGGIIAL--LDEACMFPKSTHETF-SQKLCQTFAKNNRFSKPK--- 397 (1388)
Q Consensus 324 ~f~~eq~~y~~E~i~~~~i~~~dn~~~idlie~~~~Gil~l--Ldee~~~p~~~d~~~-~~kl~~~~~~~~~~~kp~--- 397 (1388)
+|. ....+...+++|+ .+-..+|.+++-..+=||.. ..+-|. +| .+||.+- -+|.-|+.--
T Consensus 428 lF~-wlV~riN~sld~~----~~~~~fIgvLDiaGFEIfe~nSFEQLci-------NytnEkLQqf-Fnh~mFvlEqeeY 494 (1930)
T KOG0161|consen 428 LFG-WLVKRINKSLDSK----QQRDYFIGVLDIAGFEIFEFNSFEQLCI-------NYTNEKLQQF-FNHHMFVLEQEEY 494 (1930)
T ss_pred HHH-HHHHHHHHHhhhc----cccCCcceeeeeccccccCcCCHHHHHH-------HHHHHHHHhh-hcchhhhhhHHHH
Confidence 775 4566777888887 34455555555433222222 000010 11 1233322 2333333210
Q ss_pred -CCCCCeEEEecceeeeeeccCcccccchhhH--HHHHHHHHhcchhHHHhcCCCCcccccCCCCCcchhHHHHHHHHHH
Q 000617 398 -LSRTDFTILHYAGEVTYQANHFLDKNKDYVV--AEHQALLTAAKCSFVAGLFPPLPEESSKSSKFSSIGSRFKLQLQSL 474 (1388)
Q Consensus 398 -~~~~~F~I~H~ag~V~Y~~~~fl~kN~d~~~--~~~~~ll~~S~~~~v~~lf~~~~~~~~~~~~~~tv~~~f~~sl~~L 474 (1388)
--+-.++.-|| |.=-=.+.+-|+|-...++ ++-.-+-.+|...|+..|+..- .++.++|.... +.+...-
T Consensus 495 ~~EgIew~fidf-G~Dlq~~idLIEkp~Gi~slLdEEc~~PkAtd~tf~~kL~~~~---~gk~~~f~~~k---~~~~~~~ 567 (1930)
T KOG0161|consen 495 QREGIEWDFIDF-GLDLQPTIDLIEKPMGILSLLDEECVVPKATDKTFLEKLCDQH---LGKHPKFQKPK---GKKAEAH 567 (1930)
T ss_pred HHhCCceeeecc-ccchhhhHHHHhchhhHHHHHHHHHhcCCCccchHHHHHHHHh---hccCccccCcc---cccchhh
Confidence 01235555666 2111122233333221111 0111111233334444443221 01222222211 2223333
Q ss_pred HHHHcccCCeEEEeeCCCCCCCCCCCchhhHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccccCC-----
Q 000617 475 METLNATAPHYIRCVKPNNVLKPSIFENFNVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEGN----- 549 (1388)
Q Consensus 475 ~~~l~~t~~hfIrCikPn~~~~~~~fd~~~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~~----- 549 (1388)
+...+-+++ |+|.-||-..++..-.+..|+.+|++++ .+.|..--.| +..+..+..++.. ......+.
T Consensus 568 F~l~HyaG~--V~Y~~~~WL~Knkdpln~~v~~ll~~s~-~~~v~~l~~~---~~~~~~~~~~~~~-~~~~K~g~F~Tvs 640 (1930)
T KOG0161|consen 568 FALVHYAGT--VDYNVDGWLEKNKDPLNDNVVSLLKQST-NKLVSSLFQD---YAGAAAAAKGGEA-LKKTKKGSFRTVS 640 (1930)
T ss_pred hheeeecce--eccCccchhhcCCCCchHHHHHHHHhcc-cHHHHHHhhh---hhccchhhhhhhh-hcccCCcchhhHH
Confidence 333333333 9999999988888888899999999999 8877766655 6666666666654 21111110
Q ss_pred CchHHHHHHHHhhcCCCCceeccceeee---cchh---hHHHHHHHHhhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHH
Q 000617 550 YDDQVACQMILDKKGLKGYQIGKTKVFL---RAGQ---MAELDARRAEVLGNAARKIQRQTRTYIARKEFILLRNAAVIL 623 (1388)
Q Consensus 550 ~d~~~~~~~ll~~~~~~~~~iGktkVFl---r~~~---~~~Le~~r~~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~i 623 (1388)
.-.+...-.++..+.-..-+|=+--|+. ++|+ -..|..+|-.-+-. +++|. -.||-.|..|...+.---.+
T Consensus 641 ~~~keql~~Lm~~l~~T~phFvRCiIPn~~K~~g~ld~~lvl~QLrcngVLE-gIRic--R~GfPnr~~~~eFrqRy~ll 717 (1930)
T KOG0161|consen 641 QLYKEQLNKLMTTLRSTHPHFVRCIIPNEEKKPGKLDAPLVLNQLRCNGVLE-GIRIC--RQGFPNRMPFQEFRQRYELL 717 (1930)
T ss_pred HHHHHHHHHHHHHhccCCCceeEEeccCccccccccCHHHHHHHhhccCcHH-HHHHH--HhhCccccchHHHHHhHHhh
Confidence 1123333333333322211111111211 1111 12333333222211 12222 23555544443322110011
Q ss_pred HHHH--H-----HHHHHHHHHHHhHhH-------HHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHHHHHHHh
Q 000617 624 QSFL--R-----GEMARKLYEQLRREA-------AALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKR 689 (1388)
Q Consensus 624 Qa~~--R-----g~laR~~~~~~r~~~-------Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~~~~~~~ 689 (1388)
.... . +...+..+..+.... .=+...+-+-+.+.-.+-..+..-++.+|+.|||+++|+.|.++..
T Consensus 718 a~~~~~~~~~d~k~~~~~~~~~l~~d~~lyriG~tKvFfkaGvla~LEe~Rd~~ls~ii~~fQA~~Rg~l~r~~~~kr~~ 797 (1930)
T KOG0161|consen 718 AADEPKKGFSDGKKACEKILEELLLDKNLYRIGHTKVFFKAGVLAHLEEMRDEKLSQIITLFQAAIRGYLARKEFKKRLQ 797 (1930)
T ss_pred hhhhccccccccchhHHHHHHHHhcccceEeecceeeeehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1000 0 111111111111000 0011122222233333333445567899999999999999976654
Q ss_pred -hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 690 -TKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKR 768 (1388)
Q Consensus 690 -~~aAi~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~ 768 (1388)
..|+.+||+++|.|...+.| .|||-+...+++......+.++.+..+....++.++...+....+.+.
T Consensus 798 ~~~ai~~iQ~N~r~~~~lr~w-----------~W~~Lf~kvkPLL~~~~~ee~~~~~~~e~~~l~~~l~~~e~~~~ele~ 866 (1930)
T KOG0161|consen 798 QLDAIKVIQRNIRAYLKLRTW-----------PWWRLFTKVKPLLKVTKTEEEMRAKEEEIQKLKEELQKSESKRKELEE 866 (1930)
T ss_pred HHHHHHHHHHHHHHHHhhccC-----------HHHHHHHHHHHHHHhhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 56778999999999999999 899999999998876665555555555555555444444333332222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHH
Q 000617 769 LRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLV---IKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKG 845 (1388)
Q Consensus 769 ~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l---~~e~~~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ 845 (1388)
.... ...|...|+.++........+++..+ ...+.++...+.++...+. .++.+...++.+..++++
T Consensus 867 ~~~~----~~~e~~~l~~~l~~e~~~~~~aee~~~~~~~~k~~le~~l~~~~~~~e------~~ee~~~~le~~~~~~~~ 936 (1930)
T KOG0161|consen 867 KLVK----LLEEKNDLQEQLQAEKENLAEAEELLERLRAEKQELEKELKELKERLE------EEEEKNAELERKKRKLEQ 936 (1930)
T ss_pred HHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHH
Confidence 1111 12344444444444433333333222 2222222222222222122 356677778888888888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 846 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 846 ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
++..+++.+++++..+.+++.++. .++.+++.|++++..+++.+++|.++.+.++
T Consensus 937 e~~~l~~~~~~~E~~~~k~~~Ek~-------~~e~~~~~l~~e~~~~~e~~~kL~kekk~lE 991 (1930)
T KOG0161|consen 937 EVQELKEQLEELELTLQKLELEKN-------AAENKLKNLEEEINSLDENISKLSKEKKELE 991 (1930)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 888888888888887777777776 4455555555555555555555555555444
No 26
>COG5022 Myosin heavy chain [Cytoskeleton]
Probab=98.47 E-value=9e-05 Score=96.81 Aligned_cols=78 Identities=19% Similarity=0.127 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 643 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQ 720 (1388)
Q Consensus 643 ~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~~~~~~~a~i~iQ 720 (1388)
..++.||+.|||+..|++|.+....+..+|...+|+..|+.+..-....+++.+|..||....|..|+.....+..+|
T Consensus 746 ~~~~~iq~aiR~~~~rrr~~~~~k~i~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~r~~~~~~~~~i~~lq 823 (1463)
T COG5022 746 NIATRIQRAIRGRYLRRRYLQALKRIKKIQVIQHGFRLRRLVDYELKWRLFIKLQPLLSLLGSRKEYRSYLACIIKLQ 823 (1463)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhcccchHHHhHHHhhHHhHHHhhHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444444444444444444333334444444455554444444444444444444
No 27
>KOG0160 consensus Myosin class V heavy chain [Cytoskeleton]
Probab=98.46 E-value=9.6e-07 Score=111.64 Aligned_cols=86 Identities=35% Similarity=0.451 Sum_probs=80.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000617 642 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQC 721 (1388)
Q Consensus 642 ~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~~~~~~~a~i~iQ~ 721 (1388)
..+++.||+.+|+|..|+.|.++|++++.||+.+||+++|+ ... +..||+.||+.||++..|+.|...+.+++.+|+
T Consensus 673 ~~~~~~iq~~~r~~~~r~~f~~~r~~~~~~Q~~~rG~~~r~--~~~-~~~aai~~q~~~r~~~~r~~y~~~~~~~~~~qs 749 (862)
T KOG0160|consen 673 SAAKVLIQRQIRGYLARKKFLQLRSAVIIIQAYSRGVLARR--ETE-REAAAIGIQKECRSYLNRRRYRALIPASITIQS 749 (862)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH--hhH-HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 36778899999999999999999999999999999999999 333 788999999999999999999999999999999
Q ss_pred hHHHHHHHH
Q 000617 722 GWRCRVARR 730 (1388)
Q Consensus 722 ~~R~~~ark 730 (1388)
.+|++.+|.
T Consensus 750 ~~r~~~~r~ 758 (862)
T KOG0160|consen 750 GVRAMLARN 758 (862)
T ss_pred HHHHHHhcc
Confidence 999999988
No 28
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.41 E-value=5.3e-07 Score=113.74 Aligned_cols=121 Identities=25% Similarity=0.334 Sum_probs=78.9
Q ss_pred hhhhhHHHHHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHh--------HhHHHHHHHHHHHHHHHHHhhH
Q 000617 591 EVLGNAARKIQRQTRTYIARKEFILLRNAAVILQSFLRGEMARKLYEQLR--------REAAALKIQTNFRAYVAQRSYL 662 (1388)
Q Consensus 591 ~~l~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg~laR~~~~~~r--------~~~Aai~IQ~~~Rg~~~R~~y~ 662 (1388)
+....+|..||+++|+|+.|+.|+.++.-++.||+++||+..|+.|..+- --.++.++|+.+|||..|....
T Consensus 807 r~~~~aa~~iq~~f~~yk~r~~~l~tr~p~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e 886 (975)
T KOG0520|consen 807 RSDPAAASRIQKKFRGYKQRKEFLSTRQPIVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFE 886 (975)
T ss_pred ccchhHHHHhhhhhhhHHhhhhhcccCCccccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchh
Confidence 34567899999999999999999999999999999999999999887643 0123344455555554444444
Q ss_pred HhhhhhhhHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Q 000617 663 TVRSSAMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAY--SYYKKLQRAIIVSQCGWRCRVARRELRKLK 736 (1388)
Q Consensus 663 ~~r~a~i~IQs~~Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r--~~~~~~~~a~i~iQ~~~R~~~ark~l~~lk 736 (1388)
+.-. ||+.||..+|-|+.- ..|.++.++++.||+.+|.+.++.+++++.
T Consensus 887 ~~~~-------------------------a~t~~e~~yd~yKq~~~~~~~r~~~A~~~VQsm~rs~~a~qqyrR~~ 937 (975)
T KOG0520|consen 887 EQET-------------------------AATVIEDCYDFYKQLRKQTEERLTRAVVRVQSMFRSPKAQQQYRRLL 937 (975)
T ss_pred cccc-------------------------ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 4333 455555555555444 344555555555555555555554444443
No 29
>KOG0520 consensus Uncharacterized conserved protein, contains IPT/TIG domain [Function unknown]
Probab=98.10 E-value=7.7e-06 Score=103.56 Aligned_cols=136 Identities=20% Similarity=0.196 Sum_probs=98.8
Q ss_pred hhHHHHHHHHHhhHHHHHHHHHhhhhHHHHH---HHHHHHHHHH---HHHHHhHhHHHHHHHHHHHHHHHHHhhHHhhhh
Q 000617 594 GNAARKIQRQTRTYIARKEFILLRNAAVILQ---SFLRGEMARK---LYEQLRREAAALKIQTNFRAYVAQRSYLTVRSS 667 (1388)
Q Consensus 594 ~~aa~~IQ~~~R~~~~Rk~~~~~r~aai~iQ---a~~Rg~laR~---~~~~~r~~~Aai~IQ~~~Rg~~~R~~y~~~r~a 667 (1388)
..+|.+||..+|....++.-.+-...+...| ..+=++.+-. .....+...||..||+.+|+|+.|+.|..++.-
T Consensus 756 a~aa~r~q~vfr~~~~~~~~a~~i~~~~~~~i~~~~~~~m~~~~a~~~~~~r~~~~aa~~iq~~f~~yk~r~~~l~tr~p 835 (975)
T KOG0520|consen 756 AQAAARIQAVFRAQSFQKKQAREIMDATKEQISEELAVSMKASSAFSMCDDRSDPAAASRIQKKFRGYKQRKEFLSTRQP 835 (975)
T ss_pred HHHHHhhhhhhhhhhhhhhhHHHHHhhcchhhhhhhhhhhhcccchhcCccccchhHHHHhhhhhhhHHhhhhhcccCCc
Confidence 3567888999987766544322222111111 1111111111 122233457899999999999999999999999
Q ss_pred hhhHHHhhhHHHHHHHHHHH--------HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHH
Q 000617 668 AMILQTGLRAMVARNEFRLR--------KRTKAAIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVAR 729 (1388)
Q Consensus 668 ~i~IQs~~Rg~laRr~~~~~--------~~~~aAi~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ar 729 (1388)
++.||+.+||+..|+.|++. +...++..+|+.+|+++.|+.....-.+++.+|..+|.+..-
T Consensus 836 ~v~iqa~~rg~q~r~dy~ki~wSv~~lek~~lrwR~k~~g~Rgfk~~~~~e~~~~a~t~~e~~yd~yKq~ 905 (975)
T KOG0520|consen 836 IVKIQAAVRGYQVRKDYRKITWSVGVLEKLILRWRRKGKGFRGFKGRALFEEQETAATVIEDCYDFYKQL 905 (975)
T ss_pred cccchhhhhchhHhhhhheechhhhHHHHHHHHHHHhhhhhcccccccchhccccccchHHHHHHHHHHH
Confidence 99999999999999999643 334577899999999999999988888999999999988765
No 30
>cd01363 Motor_domain Myosin and Kinesin motor domain. These ATPases belong to the P-loop NTPase family and provide the driving force in myosin and kinesin mediated processes.
Probab=97.82 E-value=9.5e-06 Score=87.92 Aligned_cols=77 Identities=29% Similarity=0.334 Sum_probs=57.2
Q ss_pred CCCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhccHHHHhc-cCCCCcCCCCCcccceEEEEEc
Q 000617 4 EGKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNPVLEAFG-NAKTVRNNNSSRFGKFVEIQFD 82 (1388)
Q Consensus 4 ~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~ileafG-nakT~~N~nSSRfgk~~~l~f~ 82 (1388)
++.|+||+..|+||||||.+..--. ...+--...+++ +++..+..++++ +|.|..|++|||+..+++|++.
T Consensus 21 ~G~n~~i~~yG~tGsGKT~Tm~G~~-------~~~Giip~~~~~-~~~ll~~g~~~R~~~~t~~N~~SSRsH~i~~i~v~ 92 (186)
T cd01363 21 DGYNVCIFAYGQTGSGKTYTMEGKR-------EGAGIIPRTVTD-VIDLMDKGNANRTTAATAMNEHSSRSHSVFRIHFG 92 (186)
T ss_pred CCcceeEEEECCCCCcceEecCCCC-------CCCCcchHHHHH-HHHHHhhccccccccccCCCCccCcccEEEEEEEE
Confidence 6789999999999999997743211 000101122333 777888888999 9999999999999999999998
Q ss_pred CCCccc
Q 000617 83 KNGRIS 88 (1388)
Q Consensus 83 ~~~~i~ 88 (1388)
......
T Consensus 93 ~~~~~~ 98 (186)
T cd01363 93 GKNALA 98 (186)
T ss_pred EeecCC
Confidence 665544
No 31
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.82 E-value=0.019 Score=71.63 Aligned_cols=29 Identities=10% Similarity=0.066 Sum_probs=22.2
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHH
Q 000617 1176 LIAHWQSIVKSLNNYLKIMRANYVPSFLI 1204 (1388)
Q Consensus 1176 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~ 1204 (1388)
|..++...+..+++++..+....++++..
T Consensus 897 p~~~lr~sleq~nstl~ll~~~~~~~Ey~ 925 (1243)
T KOG0971|consen 897 PYECLRQSLEQLNSTLNLLATAMQEGEYD 925 (1243)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccc
Confidence 45678888899999998888877766543
No 32
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=97.58 E-value=0.031 Score=69.81 Aligned_cols=73 Identities=25% Similarity=0.321 Sum_probs=35.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD---AEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 835 ~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~---le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.+.++.++.+.++.+++...+.+..++..++....+++.++.. +|.-+.+|.+..-++|+++..|+++...|+
T Consensus 400 K~~kelE~k~sE~~eL~r~kE~Lsr~~d~aEs~iadlkEQVDAAlGAE~MV~qLtdknlnlEekVklLeetv~dlE 475 (1243)
T KOG0971|consen 400 KLQKELEKKNSELEELRRQKERLSRELDQAESTIADLKEQVDAALGAEEMVEQLTDKNLNLEEKVKLLEETVGDLE 475 (1243)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHhhccCHHHHHHHHHHHHHHHH
Confidence 3334444444444444333333333333333333333333322 344455555555566777777777666655
No 33
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.43 E-value=0.024 Score=69.63 Aligned_cols=10 Identities=20% Similarity=0.295 Sum_probs=6.0
Q ss_pred HHHHHhcCcc
Q 000617 1300 LYRISTMYWD 1309 (1388)
Q Consensus 1300 i~kiL~~Y~~ 1309 (1388)
+.+++.+|.+
T Consensus 1053 v~qviamYdY 1062 (1118)
T KOG1029|consen 1053 VCQVIAMYDY 1062 (1118)
T ss_pred cceeEEeecc
Confidence 4555666665
No 34
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.36 E-value=0.77 Score=60.09 Aligned_cols=45 Identities=18% Similarity=0.317 Sum_probs=22.9
Q ss_pred CCeEEEeeCCCCCCCCCCCchhhH-----HHHhhccChhHHHHHHhhcCCc
Q 000617 482 APHYIRCVKPNNVLKPSIFENFNV-----IQQLRCGGVLEAIRISCAGYPT 527 (1388)
Q Consensus 482 ~~hfIrCikPn~~~~~~~fd~~~v-----~~QLr~~gvle~iri~~~gyp~ 527 (1388)
.+.|---|=||.+.+.+..|+-+. .+++|+.-|.+.|- ...|+|.
T Consensus 107 HksFtaIvGPNGSGKSNVIDsmLFVFGfRA~kiR~~klS~LIh-~S~~~~~ 156 (1293)
T KOG0996|consen 107 HKSFTAIVGPNGSGKSNVIDSMLFVFGFRASKIRSKKLSALIH-KSDGHPN 156 (1293)
T ss_pred CCCceeeECCCCCCchHHHHHHHHHhhhhHhHHhHHHHHHHHh-ccCCCCC
Confidence 344444556666666666665433 24555555555444 3334443
No 35
>PRK11637 AmiB activator; Provisional
Probab=97.35 E-value=0.035 Score=68.37 Aligned_cols=75 Identities=19% Similarity=0.195 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGEL-------TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 905 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l-------~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~ 905 (1388)
++++.....++.....+++.+..+++....+++....++ ...+..++.+....+.++.+++....+|++....
T Consensus 172 l~~l~~~~~~L~~~k~~le~~~~~l~~~~~e~~~~k~~L~~~k~e~~~~l~~L~~~~~~~~~~l~~l~~~~~~L~~~I~~ 251 (428)
T PRK11637 172 IAELKQTREELAAQKAELEEKQSQQKTLLYEQQAQQQKLEQARNERKKTLTGLESSLQKDQQQLSELRANESRLRDSIAR 251 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444333333333333333 3333444444444444445555444444444444
Q ss_pred HH
Q 000617 906 LR 907 (1388)
Q Consensus 906 Lk 907 (1388)
++
T Consensus 252 l~ 253 (428)
T PRK11637 252 AE 253 (428)
T ss_pred HH
Confidence 43
No 36
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.35 E-value=1.8 Score=60.76 Aligned_cols=9 Identities=33% Similarity=0.866 Sum_probs=3.7
Q ss_pred ecccCccCC
Q 000617 291 LDIYGFESF 299 (1388)
Q Consensus 291 LDi~GFe~f 299 (1388)
|.|.||-+|
T Consensus 5 l~l~nf~s~ 13 (1164)
T TIGR02169 5 IELENFKSF 13 (1164)
T ss_pred EEEeCeeeE
Confidence 334444433
No 37
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.34 E-value=0.44 Score=62.12 Aligned_cols=76 Identities=18% Similarity=0.333 Sum_probs=58.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
..++..+..+.+.++..|+++++.++..+..|+.+.++...++...+.+....+.++.++..+++....+++.|+.
T Consensus 389 ~~~~~~~~~e~e~k~~~L~~evek~e~~~~~L~~e~~~~~~~~~~~~ee~~~i~~~i~~l~k~i~~~~~~l~~lk~ 464 (1074)
T KOG0250|consen 389 NNELGSELEERENKLEQLKKEVEKLEEQINSLREELNEVKEKAKEEEEEKEHIEGEILQLRKKIENISEELKDLKK 464 (1074)
T ss_pred HhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3566667777777777777777777777777777777777777777777777888888888888888888888775
No 38
>KOG1029 consensus Endocytic adaptor protein intersectin [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=97.17 E-value=0.046 Score=67.25 Aligned_cols=79 Identities=24% Similarity=0.272 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEA-------KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~-------~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
+++.+-.+.+.+..|..+++.|..++.++..++.+.+. +++.+.....-.-.++.+|+.+++++.+++..|--
T Consensus 428 eqe~iv~~nak~~ql~~eletLn~k~qqls~kl~Dvr~~~tt~kt~ie~~~~q~e~~isei~qlqarikE~q~kl~~l~~ 507 (1118)
T KOG1029|consen 428 EQEWIVYLNAKKKQLQQELETLNFKLQQLSGKLQDVRVDITTQKTEIEEVTKQRELMISEIDQLQARIKELQEKLQKLAP 507 (1118)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhheeccchHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 33444445555555666666666666665555555433 33333333334445555666666666666665555
Q ss_pred HHHHHH
Q 000617 902 ENQVLR 907 (1388)
Q Consensus 902 E~~~Lk 907 (1388)
|.+.|.
T Consensus 508 Ekq~l~ 513 (1118)
T KOG1029|consen 508 EKQELN 513 (1118)
T ss_pred HHHHHH
Confidence 544443
No 39
>PRK11637 AmiB activator; Provisional
Probab=97.17 E-value=0.093 Score=64.69 Aligned_cols=24 Identities=17% Similarity=0.430 Sum_probs=9.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 876 KDAEKRVDELQDSVQRLAEKVSNL 899 (1388)
Q Consensus 876 ~~le~~i~~Lq~el~~lee~i~~L 899 (1388)
...+.++..++.+...++..|.++
T Consensus 229 ~~~~~~l~~l~~~~~~L~~~I~~l 252 (428)
T PRK11637 229 QKDQQQLSELRANESRLRDSIARA 252 (428)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333
No 40
>KOG0164 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=97.13 E-value=0.0048 Score=75.04 Aligned_cols=21 Identities=10% Similarity=0.224 Sum_probs=15.9
Q ss_pred HHHHHHHhcCCCHHHHHHHHh
Q 000617 211 HLNMTAELLRCDAQSLEDALI 231 (1388)
Q Consensus 211 ~l~~~a~LLgv~~~~L~~~l~ 231 (1388)
....|-..+|.++++.+..+-
T Consensus 248 ~V~~Am~vIgFs~eEVe~v~~ 268 (1001)
T KOG0164|consen 248 AVQKAMRVIGFSEEEVESVLS 268 (1001)
T ss_pred HHHHHHHHcCCCHHHHHHHHH
Confidence 566777888899888877654
No 41
>KOG0250 consensus DNA repair protein RAD18 (SMC family protein) [Replication, recombination and repair]
Probab=97.11 E-value=0.096 Score=67.96 Aligned_cols=24 Identities=21% Similarity=0.264 Sum_probs=11.8
Q ss_pred CCCCCchh-hHHHHhhccChhHHHH
Q 000617 496 KPSIFENF-NVIQQLRCGGVLEAIR 519 (1388)
Q Consensus 496 ~~~~fd~~-~v~~QLr~~gvle~ir 519 (1388)
+|..|++. .|.++++-.|=...+.
T Consensus 125 k~eiyG~~IiIER~I~~~~S~~~~~ 149 (1074)
T KOG0250|consen 125 KPEIYGNSIIIERTIRRSSSTYYLL 149 (1074)
T ss_pred ChhhcCCeeEEEEeeccccchHHHH
Confidence 45567764 3344555554444333
No 42
>TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent.
Probab=97.10 E-value=2.9 Score=58.56 Aligned_cols=7 Identities=14% Similarity=0.567 Sum_probs=3.1
Q ss_pred cchhhHH
Q 000617 1039 LSYWLSN 1045 (1388)
Q Consensus 1039 l~fWLSN 1045 (1388)
+.|||+|
T Consensus 616 ~~~~lg~ 622 (1164)
T TIGR02169 616 FKYVFGD 622 (1164)
T ss_pred HHHHCCC
Confidence 3344444
No 43
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=97.05 E-value=0.013 Score=76.94 Aligned_cols=118 Identities=19% Similarity=0.206 Sum_probs=65.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHhHhHH---HHHHHHHHHHHHHHHhhHHhh-------hhhhhHHHhhhHHHH--HHHHHHH
Q 000617 620 AVILQSFLRGEMARKLYEQLRREAA---ALKIQTNFRAYVAQRSYLTVR-------SSAMILQTGLRAMVA--RNEFRLR 687 (1388)
Q Consensus 620 ai~iQa~~Rg~laR~~~~~~r~~~A---ai~IQ~~~Rg~~~R~~y~~~r-------~a~i~IQs~~Rg~la--Rr~~~~~ 687 (1388)
-+..|+..||...|.....+-...+ ..++|+..||+..|..++... ..+..||+.|||++. -+.....
T Consensus 510 ~is~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~ 589 (1401)
T KOG2128|consen 510 LISLQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLD 589 (1401)
T ss_pred HhhHHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHH
Confidence 3445666666655544332221111 123466677766666544321 235566777777663 2211222
Q ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHhhHHHHHHHHHHHHHHH
Q 000617 688 KRTKAAIIAQAQWRCHQAYSYYKKLQ-------RAIIVSQCGWRCRVARRELRKLKM 737 (1388)
Q Consensus 688 ~~~~aAi~IQ~~~R~~~~r~~~~~~~-------~a~i~iQ~~~R~~~ark~l~~lk~ 737 (1388)
....-++.+|+..|+++.|+.|.+.. .+++++|+++|....|+.++.+..
T Consensus 590 ~~~~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 590 SAKKEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HhhHHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 23345566777777777766654433 467777888888777777776654
No 44
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=97.02 E-value=0.53 Score=60.46 Aligned_cols=46 Identities=24% Similarity=0.450 Sum_probs=27.3
Q ss_pred EEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhcc--HHHHhccCCCCc
Q 000617 11 LVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP--VLEAFGNAKTVR 66 (1388)
Q Consensus 11 i~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~--ileafGnakT~~ 66 (1388)
-|+|=.|||||- |+.-+|++-|-.. + ++|-|+|- +.=.=|.|.-++
T Consensus 29 AITGlNGSGKSN----ILDsICFvLGI~n-----l-~~VRA~nlqeLIyk~GQAGiTk 76 (1174)
T KOG0933|consen 29 AITGLNGSGKSN----ILDSICFVLGITN-----L-SQVRASNLQELIYKNGQAGITK 76 (1174)
T ss_pred hhhcCCCCCchH----HHHHHHHHHccch-----H-HHHHHHHHHHHHHhcCccccee
Confidence 478999999996 5566666644321 1 12444432 555667775544
No 45
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=97.00 E-value=0.11 Score=66.89 Aligned_cols=34 Identities=15% Similarity=0.257 Sum_probs=17.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSE 865 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~ 865 (1388)
+..+|+.|+.+|+.++...++.+..+|.++++++
T Consensus 546 r~~~lE~E~~~lr~elk~kee~~~~~e~~~~~lr 579 (697)
T PF09726_consen 546 RRRQLESELKKLRRELKQKEEQIRELESELQELR 579 (697)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555555555555444433
No 46
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.98 E-value=0.0008 Score=45.25 Aligned_cols=19 Identities=42% Similarity=0.781 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHhh
Q 000617 643 AAALKIQTNFRAYVAQRSY 661 (1388)
Q Consensus 643 ~Aai~IQ~~~Rg~~~R~~y 661 (1388)
.||++||+.||||++|+.|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 4666666666666666665
No 47
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=96.98 E-value=0.13 Score=55.60 Aligned_cols=78 Identities=22% Similarity=0.287 Sum_probs=40.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA---EKVSNLESENQVLRQ 908 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~le---e~i~~Le~E~~~Lkq 908 (1388)
.+..+.+.++.++.-|.+|++..+++|..-....-..+++.+++..+-.++..|+.++.+-+ +.++.|..|-..|+|
T Consensus 99 dlsqt~aikeql~kyiReLEQaNDdLErakRati~sleDfeqrLnqAIErnAfLESELdEke~llesvqRLkdEardlrq 178 (333)
T KOG1853|consen 99 DLSQTHAIKEQLRKYIRELEQANDDLERAKRATIYSLEDFEQRLNQAIERNAFLESELDEKEVLLESVQRLKDEARDLRQ 178 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444555555555555555543333333334555555555555555555554433 355667777777766
Q ss_pred H
Q 000617 909 Q 909 (1388)
Q Consensus 909 q 909 (1388)
.
T Consensus 179 e 179 (333)
T KOG1853|consen 179 E 179 (333)
T ss_pred H
Confidence 4
No 48
>PRK04863 mukB cell division protein MukB; Provisional
Probab=96.92 E-value=1.1 Score=62.70 Aligned_cols=32 Identities=9% Similarity=0.043 Sum_probs=16.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 736 KMAARETGALQEAKNKLEKRVEELTWRLQIEK 767 (1388)
Q Consensus 736 k~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~ 767 (1388)
...+..+..+......++.++..|+...+..+
T Consensus 303 e~tE~nL~rI~diL~ELe~rL~kLEkQaEkA~ 334 (1486)
T PRK04863 303 AAEQYRLVEMARELAELNEAESDLEQDYQAAS 334 (1486)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555555555555555555554433
No 49
>KOG0933 consensus Structural maintenance of chromosome protein 2 (chromosome condensation complex Condensin, subunit E) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=96.90 E-value=0.17 Score=64.70 Aligned_cols=33 Identities=9% Similarity=0.311 Sum_probs=15.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFT 862 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~ 862 (1388)
+.++.+|.+++..+++.+++...+.+.-+...+
T Consensus 786 e~rlkdl~keik~~k~~~e~~~~~~ek~~~e~e 818 (1174)
T KOG0933|consen 786 ERRLKDLEKEIKTAKQRAEESSKELEKRENEYE 818 (1174)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555555555555555444444444333333
No 50
>PF12718 Tropomyosin_1: Tropomyosin like; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].
Probab=96.89 E-value=0.16 Score=52.33 Aligned_cols=132 Identities=21% Similarity=0.281 Sum_probs=68.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccc
Q 000617 742 TGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIK 821 (1388)
Q Consensus 742 ~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~ 821 (1388)
...+......++.++.++..+.. .+..++..|+..+..++.+++.++..+......+.....
T Consensus 9 ~d~a~~r~e~~e~~~K~le~~~~-----------~~E~EI~sL~~K~~~lE~eld~~~~~l~~~k~~lee~~~------- 70 (143)
T PF12718_consen 9 ADNAQDRAEELEAKVKQLEQENE-----------QKEQEITSLQKKNQQLEEELDKLEEQLKEAKEKLEESEK------- 70 (143)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHH-------
Confidence 33444455556666666655544 344677777777777777777777666432222211000
Q ss_pred ccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 822 ETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 822 e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
....++ .|...+..|+.+++..+..+.......+....+....+.++..|..+...++.++..|..
T Consensus 71 -------~~~~~E-------~l~rriq~LEeele~ae~~L~e~~ekl~e~d~~ae~~eRkv~~le~~~~~~E~k~eel~~ 136 (143)
T PF12718_consen 71 -------RKSNAE-------QLNRRIQLLEEELEEAEKKLKETTEKLREADVKAEHFERKVKALEQERDQWEEKYEELEE 136 (143)
T ss_pred -------HHHhHH-------HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 111222 344444444444444444444444444444444445555566666666666666665555
Q ss_pred HHHH
Q 000617 902 ENQV 905 (1388)
Q Consensus 902 E~~~ 905 (1388)
....
T Consensus 137 k~~~ 140 (143)
T PF12718_consen 137 KYKE 140 (143)
T ss_pred HHHH
Confidence 5443
No 51
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=96.88 E-value=0.19 Score=59.55 Aligned_cols=81 Identities=17% Similarity=0.264 Sum_probs=52.6
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA----EKVSNLESENQ 904 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~le----e~i~~Le~E~~ 904 (1388)
+..++..++.++..+..+++..++++.+++.++..++...+++..+..+++.++.+++...+..+ .++..|+.+..
T Consensus 207 D~~eL~~lr~eL~~~~~~i~~~k~~l~el~~el~~l~~~i~~~~~~k~~l~~eI~e~~~~~~~~r~~t~~Ev~~Lk~~~~ 286 (325)
T PF08317_consen 207 DQEELEALRQELAEQKEEIEAKKKELAELQEELEELEEKIEELEEQKQELLAEIAEAEKIREECRGWTRSEVKRLKAKVD 286 (325)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHH
Confidence 45666777777777777777777777777777666666666555555566666665555444333 25677777777
Q ss_pred HHHHH
Q 000617 905 VLRQQ 909 (1388)
Q Consensus 905 ~Lkqq 909 (1388)
.|+..
T Consensus 287 ~Le~~ 291 (325)
T PF08317_consen 287 ALEKL 291 (325)
T ss_pred HHHHH
Confidence 77754
No 52
>KOG2128 consensus Ras GTPase-activating protein family - IQGAP [Signal transduction mechanisms]
Probab=96.86 E-value=0.013 Score=77.09 Aligned_cols=115 Identities=17% Similarity=0.219 Sum_probs=83.6
Q ss_pred HHHHHhhHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHH----h-HhHHHHHHHHHHHHHHH----HHhhHHhh
Q 000617 600 IQRQTRTYIARKEFILL-----RNAAVILQSFLRGEMARKLYEQL----R-REAAALKIQTNFRAYVA----QRSYLTVR 665 (1388)
Q Consensus 600 IQ~~~R~~~~Rk~~~~~-----r~aai~iQa~~Rg~laR~~~~~~----r-~~~Aai~IQ~~~Rg~~~----R~~y~~~r 665 (1388)
.|..+|+...|..-..+ ..-...+|+..||+..|..++.. + +.-....||..|||++. ...+....
T Consensus 513 ~q~~v~~i~~~~~l~~~~~s~~~s~~~~~qa~~rg~~~r~~~~~~~~fl~~~~P~~~diq~~vr~~~~~~~~~~~~~~~~ 592 (1401)
T KOG2128|consen 513 LQALVRGIVLRSALFSLYPSLGKSEKLRIQASERGFSTRNKFRSRLDFLKKQTPFVVDIQALVRGILQYIPRDVYLDSAK 592 (1401)
T ss_pred HHHHhhhhHHHhhHHHHhhhhccccchhhhhhccccchHHHHHhhhhHHHhcCchHHHHHHHHHHHhhhchHHHHHHHhh
Confidence 67777777777632111 12234449999999988776553 2 34567889999999984 22233446
Q ss_pred hhhhhHHHhhhHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 666 SSAMILQTGLRAMVARNEFRLRK-----RTKAAIIAQAQWRCHQAYSYYKKLQR 714 (1388)
Q Consensus 666 ~a~i~IQs~~Rg~laRr~~~~~~-----~~~aAi~IQ~~~R~~~~r~~~~~~~~ 714 (1388)
..++.+|+..||+++|+.+.... ...+.+.||+++|....|..|..+..
T Consensus 593 ~evv~~qs~~R~~lsrk~~~~~~q~~~~~~~~~i~iqs~~r~f~~r~~y~~L~~ 646 (1401)
T KOG2128|consen 593 KEVVKFQSLTRGALSRKKYSRKLQYFKDNMTKIIKIQSKIRKFPNRKDYKLLFT 646 (1401)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHhhhhHHHHHHHHHhcccchHHHHHhc
Confidence 67899999999999999886553 25578899999999999999988763
No 53
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=96.84 E-value=0.14 Score=65.95 Aligned_cols=59 Identities=12% Similarity=0.240 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 846 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 904 (1388)
Q Consensus 846 ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~ 904 (1388)
.+..+.++...||..+...-.-+.++-..+-+...+++-++..+...+.+|.+|+....
T Consensus 595 aL~amqdk~~~LE~sLsaEtriKldLfsaLg~akrq~ei~~~~~~~~d~ei~~lk~ki~ 653 (697)
T PF09726_consen 595 ALSAMQDKNQHLENSLSAETRIKLDLFSALGDAKRQLEIAQGQLRKKDKEIEELKAKIA 653 (697)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444333334444444555555555555555555555555544433
No 54
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.82 E-value=4.7 Score=56.38 Aligned_cols=33 Identities=24% Similarity=0.106 Sum_probs=17.3
Q ss_pred HHHHHHhhHHHHHHHHHhhhhHHHHHHHHHHHH
Q 000617 599 KIQRQTRTYIARKEFILLRNAAVILQSFLRGEM 631 (1388)
Q Consensus 599 ~IQ~~~R~~~~Rk~~~~~r~aai~iQa~~Rg~l 631 (1388)
.|..|+|-...-..+..++..+..++..++-..
T Consensus 227 ~i~~W~~~~~~~~~~~~~r~~~~~l~~~~~~l~ 259 (1201)
T PF12128_consen 227 DIDDWLRDIRASQGFEKVRPEFDKLQQQYRQLQ 259 (1201)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555544444455555666666665555443
No 55
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.81 E-value=4.7 Score=56.28 Aligned_cols=11 Identities=18% Similarity=0.299 Sum_probs=4.3
Q ss_pred HhhchhHHHHH
Q 000617 1238 VKAGLAELEQW 1248 (1388)
Q Consensus 1238 Ir~nls~LE~W 1248 (1388)
++-.+..++.=
T Consensus 947 ~~~~i~~le~~ 957 (1163)
T COG1196 947 LEREIERLEEE 957 (1163)
T ss_pred HHHHHHHHHHH
Confidence 33334444333
No 56
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=96.76 E-value=1.3 Score=61.98 Aligned_cols=8 Identities=25% Similarity=0.322 Sum_probs=3.5
Q ss_pred HHHHhhcC
Q 000617 557 QMILDKKG 564 (1388)
Q Consensus 557 ~~ll~~~~ 564 (1388)
..+|..++
T Consensus 125 ~~~l~~~~ 132 (1179)
T TIGR02168 125 QDLFLDTG 132 (1179)
T ss_pred HHHHhccC
Confidence 34444443
No 57
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=96.73 E-value=0.44 Score=52.96 Aligned_cols=52 Identities=19% Similarity=0.254 Sum_probs=25.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR 881 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~ 881 (1388)
..+...|..+...++.....++.++.++..++.+++.....+..++..++..
T Consensus 88 ~~e~~aL~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~ 139 (239)
T COG1579 88 ERELRALNIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKN 139 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555555555555444444444444444333
No 58
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=96.71 E-value=2.3 Score=54.89 Aligned_cols=56 Identities=14% Similarity=0.200 Sum_probs=32.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 740 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDAN 799 (1388)
Q Consensus 740 ~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~ 799 (1388)
++-.++......++.++..|++++++.-....+ .+.|..+++++++.+..+..++.
T Consensus 170 ~~~~hL~velAdle~kir~LrqElEEK~enll~----lr~eLddleae~~klrqe~~e~l 225 (1195)
T KOG4643|consen 170 KKNLHLEVELADLEKKIRTLRQELEEKFENLLR----LRNELDDLEAEISKLRQEIEEFL 225 (1195)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHH
Confidence 345567777778888888887777744332222 23455555555555555544443
No 59
>PRK09039 hypothetical protein; Validated
Probab=96.67 E-value=0.21 Score=59.30 Aligned_cols=28 Identities=25% Similarity=0.398 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 741 ETGALQEAKNKLEKRVEELTWRLQIEKR 768 (1388)
Q Consensus 741 e~~~l~~~~~~Le~kv~~l~~~l~~e~~ 768 (1388)
++....+....++.++.++...+..+..
T Consensus 47 ~i~~~~~eL~~L~~qIa~L~e~L~le~~ 74 (343)
T PRK09039 47 EISGKDSALDRLNSQIAELADLLSLERQ 74 (343)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444455556677777776666665443
No 60
>PF00612 IQ: IQ calmodulin-binding motif; InterPro: IPR000048 The IQ motif is an extremely basic unit of about 23 amino acids, whose conserved core usually fits the consensus A-x(3)-I-Q-x(2)-F-R-x(4)-K-K. The IQ motif, which can be present in one or more copies, serves as a binding site for different EF-hand proteins including the essential and regulatory myosin light chains, calmodulin (CaM), and CaM-like proteins [, ].Many IQ motifs are protein kinase C (PKC) phosphorylation sites [, ]. Resolution of the 3D structure of scallop myosin has shown that the IQ motif forms a basic amphipathic helix []. Some proteins known to contain an IQ motif are listed below: A number of conventional and unconventional myosins. Neuromodulin (GAP-43). This protein is associated with nerve growth. It is a major component of the motile "growth cones" that form the tips of elongating axons. Neurogranin (NG/p17). Acts as a "third messenger" substrate of protein kinase C-mediated molecular cascades during synaptic development and remodeling. Sperm surface protein Sp17. Ras GTPase-activating-like protein IQGAP1. IQGAP1 contains 4 IQ motifs. This entry covers the entire IQ motif.; GO: 0005515 protein binding; PDB: 2DFS_A 2IX7_C 1OE9_A 1W7J_A 1W7I_A 1KQM_A 1KK7_A 1WDC_A 1DFL_A 1B7T_A ....
Probab=96.66 E-value=0.0021 Score=43.25 Aligned_cols=19 Identities=47% Similarity=0.569 Sum_probs=10.3
Q ss_pred hHHHHHHHHHhhHHHHHHH
Q 000617 595 NAARKIQRQTRTYIARKEF 613 (1388)
Q Consensus 595 ~aa~~IQ~~~R~~~~Rk~~ 613 (1388)
+||+.||++||||++|++|
T Consensus 2 ~aai~iQ~~~R~~~~Rk~~ 20 (21)
T PF00612_consen 2 KAAIIIQSYWRGYLARKRY 20 (21)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555555555554
No 61
>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]
Probab=96.58 E-value=1.5 Score=54.55 Aligned_cols=57 Identities=11% Similarity=0.111 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHhhHHhhhh---hhhHHHhhhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 648 IQTNFRAYVAQRSYLTVRSS---AMILQTGLRAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQRA 715 (1388)
Q Consensus 648 IQ~~~Rg~~~R~~y~~~r~a---~i~IQs~~Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~~~~~~~a 715 (1388)
+=+.+.-|+.+.+|++..-+ +|++-- +-..+..+++.+|++.|||++|++++.....
T Consensus 779 lv~kVn~WLv~sRWkk~q~~a~sVIKLkN-----------kI~yRae~v~k~Q~~~Rg~L~rkr~~~ri~~ 838 (1259)
T KOG0163|consen 779 LVAKVNKWLVRSRWKKSQYGALSVIKLKN-----------KIIYRAECVLKAQRIARGYLARKRHRPRIAG 838 (1259)
T ss_pred HHHHHHHHHHHhHHHHhhhhhhheeehhh-----------HHHHHHHHHHHHHHHHHHHHHHhhhchHHHH
Confidence 33456778888888765433 222211 1122345677889999999999988665433
No 62
>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins.
Probab=96.53 E-value=7 Score=54.67 Aligned_cols=27 Identities=11% Similarity=0.243 Sum_probs=15.5
Q ss_pred HHhcCccCCCCCCCCCHH-HHHHHHhhhh
Q 000617 1303 ISTMYWDDKYGTHSVSSE-VISSMRVMMM 1330 (1388)
Q Consensus 1303 iL~~Y~~d~~e~~~v~~~-~i~~v~~~~~ 1330 (1388)
....|+..+.. ..||++ ++..|+..+.
T Consensus 1054 ~~~~w~~~~~~-~~lP~e~~~~~l~~l~~ 1081 (1201)
T PF12128_consen 1054 EYELWRSSDGS-RELPSEEYVNALRELLD 1081 (1201)
T ss_pred HHHHHhcccCc-ccCCCHHHHHHHHHHHH
Confidence 44455433333 357777 8888776554
No 63
>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]
Probab=96.50 E-value=7.2 Score=54.47 Aligned_cols=42 Identities=36% Similarity=0.520 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 864 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 905 (1388)
Q Consensus 864 l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~ 905 (1388)
++...+.+..++.+++..+..+++.+.+++..++.++..+..
T Consensus 451 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 492 (1163)
T COG1196 451 LEEQLEELRDRLKELERELAELQEELQRLEKELSSLEARLDR 492 (1163)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333333343333333333333333
No 64
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.49 E-value=0.46 Score=58.53 Aligned_cols=79 Identities=19% Similarity=0.253 Sum_probs=35.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN----GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 905 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~----~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~ 905 (1388)
..++..|..++..+...+.+-..+...++.++......+ .+...++.+++..++-++.+.+++.++.++|-....+
T Consensus 370 k~~ie~L~~el~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQeL~~yi~~ 449 (546)
T PF07888_consen 370 KDEIEKLSRELQMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQELLEYIER 449 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555555555555555444444444444444322222 1222333444444444444444444444444444444
Q ss_pred HHH
Q 000617 906 LRQ 908 (1388)
Q Consensus 906 Lkq 908 (1388)
|++
T Consensus 450 Le~ 452 (546)
T PF07888_consen 450 LEQ 452 (546)
T ss_pred HHH
Confidence 443
No 65
>PHA02562 46 endonuclease subunit; Provisional
Probab=96.31 E-value=0.66 Score=59.44 Aligned_cols=24 Identities=17% Similarity=0.358 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTAD 855 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ 855 (1388)
++..|......++.++..+...+.
T Consensus 300 ~~~~l~d~i~~l~~~l~~l~~~i~ 323 (562)
T PHA02562 300 RITKIKDKLKELQHSLEKLDTAID 323 (562)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444444333333333
No 66
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=96.22 E-value=2.9 Score=51.31 Aligned_cols=23 Identities=13% Similarity=-0.140 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHH
Q 000617 706 YSYYKKLQRAIIVSQCGWRCRVA 728 (1388)
Q Consensus 706 r~~~~~~~~a~i~iQ~~~R~~~a 728 (1388)
|+.|..++..+.+.|...-....
T Consensus 265 re~~~~L~~D~nK~~~y~~~~~~ 287 (581)
T KOG0995|consen 265 REKKARLQDDVNKFQAYVSQMKS 287 (581)
T ss_pred HHHHHHHHhHHHHHHHHHHHHHh
Confidence 33344444444444444444433
No 67
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=96.21 E-value=2 Score=49.63 Aligned_cols=9 Identities=33% Similarity=0.239 Sum_probs=3.6
Q ss_pred hhcCCCCCc
Q 000617 1150 CIQAPRTSR 1158 (1388)
Q Consensus 1150 ~i~~~~~~~ 1158 (1388)
+|-++..+.
T Consensus 471 aiAaedt~~ 479 (499)
T COG4372 471 AIAAEDTVG 479 (499)
T ss_pred CCCCCCCcC
Confidence 344444433
No 68
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=96.19 E-value=0.66 Score=54.24 Aligned_cols=80 Identities=13% Similarity=0.255 Sum_probs=45.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNLESENQV 905 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee----~i~~Le~E~~~ 905 (1388)
.+++..++.++..+..++.....++++++.++.++....++...+..+++.++.+++..+++.+. ++..|....+.
T Consensus 203 ~~eL~~lk~~l~~~~~ei~~~~~~l~e~~~~l~~l~~~I~~~~~~k~e~~~~I~~ae~~~~~~r~~t~~Ei~~Lk~~~~~ 282 (312)
T smart00787 203 PTELDRAKEKLKKLLQEIMIKVKKLEELEEELQELESKIEDLTNKKSELNTEIAEAEKKLEQCRGFTFKEIEKLKEQLKL 282 (312)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence 34445555555555555655566666666655555555555555555555555555544443332 66677777777
Q ss_pred HHHH
Q 000617 906 LRQQ 909 (1388)
Q Consensus 906 Lkqq 909 (1388)
|++.
T Consensus 283 Le~l 286 (312)
T smart00787 283 LQSL 286 (312)
T ss_pred HHHH
Confidence 7764
No 69
>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT). This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].
Probab=96.17 E-value=1 Score=55.67 Aligned_cols=22 Identities=32% Similarity=0.421 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 744 ALQEAKNKLEKRVEELTWRLQI 765 (1388)
Q Consensus 744 ~l~~~~~~Le~kv~~l~~~l~~ 765 (1388)
.+++....|+.++.+++..+..
T Consensus 161 ~Le~e~~~l~~~v~~l~~eL~~ 182 (546)
T PF07888_consen 161 QLEEEVEQLREEVERLEAELEQ 182 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444455555555444443
No 70
>KOG4229 consensus Myosin VII, myosin IXB and related myosins [Cell motility]
Probab=96.17 E-value=0.0028 Score=83.27 Aligned_cols=263 Identities=17% Similarity=0.097 Sum_probs=159.8
Q ss_pred HHHHHHHHHcccCCeEEEeeCCCCCCCCCCCchh-hHHHHhhccChhHHHHHHhhcCCcccchHHHHHhhcccccccccC
Q 000617 470 QLQSLMETLNATAPHYIRCVKPNNVLKPSIFENF-NVIQQLRCGGVLEAIRISCAGYPTRRTFYEFVNRFGILAPEVLEG 548 (1388)
Q Consensus 470 sl~~L~~~l~~t~~hfIrCikPn~~~~~~~fd~~-~v~~QLr~~gvle~iri~~~gyp~r~~~~~F~~ry~~l~~~~~~~ 548 (1388)
++.+....|.+..+||.|||+||..-.+..++.. .+..++...|..++....+.|+..+..|.+++.+++...-.....
T Consensus 651 ~~~~~~s~l~rg~~~~~~~i~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~~~~~ 730 (1062)
T KOG4229|consen 651 SLFEELSALARGQDHFMRAISQNPRYALEQGSQERKGPRRLSSRGSTATPSHDRPGRKTNLLYSEVVNGRKNSEYLCSPR 730 (1062)
T ss_pred hhhcchhhcCCCccchhhhhhcCchhhhhhcCcccCchhhhhhcccccCCCCCCccccccccchhhhcccccccccCCCC
Confidence 4445555666778999999999999988888876 899999999999999999999999999999888776332111111
Q ss_pred CCchHHHHHHHHhhcCCCCceeccceeeecchhhHHHHHHHHhhh--------------------------hhHHHHHHH
Q 000617 549 NYDDQVACQMILDKKGLKGYQIGKTKVFLRAGQMAELDARRAEVL--------------------------GNAARKIQR 602 (1388)
Q Consensus 549 ~~d~~~~~~~ll~~~~~~~~~iGktkVFlr~~~~~~Le~~r~~~l--------------------------~~aa~~IQ~ 602 (1388)
..-.+.+|..++.+.+.+.+..+.+.++.+.--...+.-.+.+.+ ...+..||+
T Consensus 731 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~~t~~~l~~~~kk~~~~~~~~~~~~~~k~~~~~~~~~ 810 (1062)
T KOG4229|consen 731 PDLAERARVQLLEKNAINMKSERLTTLLPRYIPDPCLDPVRRERVTQLRLHQHKKKAFPQPLRSPQVRKSKLESYLAIAK 810 (1062)
T ss_pred HHHHHHHHHHHHhhccccchhhhhcccccccCccccCCccccchhhhHHHHHhhccccCccccccchhhccchhhhhhhh
Confidence 111244566666666555566666665554322111111000000 122334444
Q ss_pred HHhhHHHHHHHHHh----hhhHHHHHHHHHHHHHHHHH------------------------------------------
Q 000617 603 QTRTYIARKEFILL----RNAAVILQSFLRGEMARKLY------------------------------------------ 636 (1388)
Q Consensus 603 ~~R~~~~Rk~~~~~----r~aai~iQa~~Rg~laR~~~------------------------------------------ 636 (1388)
-++....+..+..+ -..++..|..|=|...+...
T Consensus 811 ~~~~~~~~~~~~~i~~~~~~~~v~~~~~~t~~~~~~~v~~~~~~~~i~~~~~~~~~~i~~~~~~~~v~~~~~~~~~~n~~ 890 (1062)
T KOG4229|consen 811 ELFVRRFLENQKKIGLRFPDNVVLRQVSYTGELDQEQVRRSLYFAEISPQDSVNQSRIGLPETVDTVADEEFSTLSCNAD 890 (1062)
T ss_pred HHHHHHHHHhhhhhccCCChHHHHHhhhchhhhccchheeccccccccchhccccccccCCccchhhchhheeecccCcc
Confidence 44443333332111 12333444444332211111
Q ss_pred --------------------HHHhHhHH---HHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHHHH-HHHhhHH
Q 000617 637 --------------------EQLRREAA---ALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNEFR-LRKRTKA 692 (1388)
Q Consensus 637 --------------------~~~r~~~A---ai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~~~-~~~~~~a 692 (1388)
..+.++.. +...|++++....++.+..+....+.+| +++++.|+... ......+
T Consensus 891 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~v~~~--~~~~~~~~~~~~~~~~~~~ 968 (1062)
T KOG4229|consen 891 TIRLGVHVVFLLLNERSRTEVALKDEANDELSFFKQKWFRLTLERKGLLRLSEGSVLIQ--RLELLGRRTCPVAGAPAVA 968 (1062)
T ss_pred chhccceEEeecccchHHHHHHHhHhhHHHHHHHHHHHHHhhhccccchhhcchhHHHH--HHHHhcccCCcchhhhhhh
Confidence 00111111 3446777777777788888888888888 76766666433 2234567
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Q 000617 693 AIIAQAQWRCHQAYSYYKKLQRAIIVSQCGWRCRVARRELRK 734 (1388)
Q Consensus 693 Ai~IQ~~~R~~~~r~~~~~~~~a~i~iQ~~~R~~~ark~l~~ 734 (1388)
+.-+|..|+.+..+..+...+++.+.+|..++....++.+..
T Consensus 969 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~ 1010 (1062)
T KOG4229|consen 969 AASLQNAWPVYRELSGRLGLRRSFIADQSPRSRPAYTMIFAA 1010 (1062)
T ss_pred hhhccccchhhhhhhhhHHHhhhhcchhcccccchhhhhHHH
Confidence 778888888888888888888888888888877776655543
No 71
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.16 E-value=1.9 Score=45.88 Aligned_cols=80 Identities=15% Similarity=0.199 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN-------GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 903 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~-------~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~ 903 (1388)
.++..|+.++.++..+.+.+.++..++-.....++... -.....+.+...++..+...+++...-...|..|.
T Consensus 102 ~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Ql~~~e~l~~~~da~l~e~t~~i~eL~~~ieEy~~~teeLR~e~ 181 (193)
T PF14662_consen 102 AEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQLCEFESLICQRDAILSERTQQIEELKKTIEEYRSITEELRLEK 181 (193)
T ss_pred HHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 44555555555555555555555555544444444333 12222333444555666666666666666677777
Q ss_pred HHHHHHH
Q 000617 904 QVLRQQA 910 (1388)
Q Consensus 904 ~~Lkqq~ 910 (1388)
.+|+++.
T Consensus 182 s~LEeql 188 (193)
T PF14662_consen 182 SRLEEQL 188 (193)
T ss_pred HHHHHHH
Confidence 7776654
No 72
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=96.16 E-value=1.4 Score=49.85 Aligned_cols=26 Identities=15% Similarity=0.272 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADE 856 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~e 856 (1388)
.++..+...+..|+.++......+..
T Consensus 134 eR~e~~E~ki~eLE~el~~~~~~lk~ 159 (237)
T PF00261_consen 134 ERAEAAESKIKELEEELKSVGNNLKS 159 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhchhHHHHHHHHHHHHHHHHH
Confidence 33334444444444444333333333
No 73
>PRK02224 chromosome segregation protein; Provisional
Probab=96.12 E-value=1.8 Score=58.82 Aligned_cols=8 Identities=25% Similarity=0.891 Sum_probs=4.5
Q ss_pred eeecchhh
Q 000617 575 VFLRAGQM 582 (1388)
Q Consensus 575 VFlr~~~~ 582 (1388)
||+.-|.+
T Consensus 133 ~~i~Qge~ 140 (880)
T PRK02224 133 AYVRQGEV 140 (880)
T ss_pred eEeeccCh
Confidence 55665554
No 74
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.08 E-value=0.63 Score=55.77 Aligned_cols=30 Identities=23% Similarity=0.312 Sum_probs=18.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 779 QEIAKLQEALHAMQLRVDDANSLVIKEREA 808 (1388)
Q Consensus 779 ~E~~~L~~~le~l~~~l~~~~~~l~~e~~~ 808 (1388)
+|+..|+.++++++.+.+.++.++...++.
T Consensus 43 eeK~~Lkqq~eEleaeyd~~R~Eldqtkea 72 (772)
T KOG0999|consen 43 EEKEDLKQQLEELEAEYDLARTELDQTKEA 72 (772)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566667777777776666666555444433
No 75
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.07 E-value=1.4 Score=49.47 Aligned_cols=25 Identities=12% Similarity=0.335 Sum_probs=12.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 779 QEIAKLQEALHAMQLRVDDANSLVI 803 (1388)
Q Consensus 779 ~E~~~L~~~le~l~~~l~~~~~~l~ 803 (1388)
+++.+++..+..++.++.++++.+.
T Consensus 73 ~~i~~~~~eik~l~~eI~~~~~~I~ 97 (265)
T COG3883 73 KEIDQSKAEIKKLQKEIAELKENIV 97 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444555555555555554443
No 76
>PRK02224 chromosome segregation protein; Provisional
Probab=96.05 E-value=7.4 Score=52.89 Aligned_cols=11 Identities=9% Similarity=0.072 Sum_probs=5.7
Q ss_pred CChHhHHHHHH
Q 000617 374 STHETFSQKLC 384 (1388)
Q Consensus 374 ~~d~~~~~kl~ 384 (1388)
++-.|+++-+.
T Consensus 34 ~GKStil~ai~ 44 (880)
T PRK02224 34 SGKSSLLEACF 44 (880)
T ss_pred CCHHHHHHHHH
Confidence 34455666544
No 77
>PF14662 CCDC155: Coiled-coil region of CCDC155
Probab=96.01 E-value=0.29 Score=51.83 Aligned_cols=74 Identities=20% Similarity=0.267 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+..|++.|+..+..++++...+-.+...++++.+.+..++..++.+...+..+.+.+..++..|..++..|+.|
T Consensus 65 l~eEledLk~~~~~lEE~~~~L~aq~rqlEkE~q~L~~~i~~Lqeen~kl~~e~~~lk~~~~eL~~~~~~Lq~Q 138 (193)
T PF14662_consen 65 LEEELEDLKTLAKSLEEENRSLLAQARQLEKEQQSLVAEIETLQEENGKLLAERDGLKKRSKELATEKATLQRQ 138 (193)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhhhhHHHHHHHHHHhhHHHHHH
Confidence 33344444444444444444444444444445555555555555555555555555566666665555555554
No 78
>PRK03918 chromosome segregation protein; Provisional
Probab=96.00 E-value=1.1 Score=60.80 Aligned_cols=19 Identities=26% Similarity=0.536 Sum_probs=15.6
Q ss_pred EEEEecCcCCchHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKML 27 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i 27 (1388)
..+|+|.+|||||+....|
T Consensus 25 ~~~i~G~nG~GKStil~ai 43 (880)
T PRK03918 25 INLIIGQNGSGKSSILEAI 43 (880)
T ss_pred cEEEEcCCCCCHHHHHHHH
Confidence 4679999999999987644
No 79
>PHA02562 46 endonuclease subunit; Provisional
Probab=95.99 E-value=1.9 Score=55.28 Aligned_cols=16 Identities=25% Similarity=0.451 Sum_probs=6.5
Q ss_pred HHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLL 847 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei 847 (1388)
.+..++.+++.++..+
T Consensus 307 ~i~~l~~~l~~l~~~i 322 (562)
T PHA02562 307 KLKELQHSLEKLDTAI 322 (562)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3334444444433333
No 80
>PF00261 Tropomyosin: Tropomyosin; InterPro: IPR000533 Tropomyosins [], are a family of closely related proteins present in muscle and non-muscle cells. In striated muscle, tropomyosin mediate the interactions between the troponin complex and actin so as to regulate muscle contraction []. The role of tropomyosin in smooth muscle and non-muscle tissues is not clear. Tropomyosin is an alpha-helical protein that forms a coiled-coil structure of 2 parallel helices containing 2 sets of 7 alternating actin binding sites []. There are multiple cell-specific isoforms, created by differential splicing of the messenger RNA from one gene, but the proportions of the isoforms vary between different cell types. Muscle isoforms of tropomyosin are characterised by having 284 amino acid residues and a highly conserved N-terminal region, whereas non-muscle forms are generally smaller and are heterogeneous in their N-terminal region. This entry represents tropomyosin (Tmp) 1, 2 and 3. Within the yeast Tmp1 and Tmp2, biochemical and sequence analyses indicate that Tpm2 spans four actin monomers along a filament, whereas Tpm1 spans five. Despite its shorter length, Tpm2 can compete with Tpm1 for binding to F-actin. Over-expression of Tpm2 in vivo alters the axial budding of haploids to a bipolar pattern, and this can be partially suppressed by co-over-expression of Tpm1. This suggests distinct functions for the two tropomyosins, and indicates that the ratio between them is important for correct morphogenesis [].; PDB: 2EFR_A 2Z5H_C 2Z5I_D 2D3E_B 2EFS_D 3U59_B 1C1G_C 1IHQ_A 3AZD_B 1MV4_B ....
Probab=95.98 E-value=1.1 Score=50.53 Aligned_cols=29 Identities=31% Similarity=0.574 Sum_probs=11.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 874 KLKDAEKRVDELQDSVQRLAEKVSNLESE 902 (1388)
Q Consensus 874 ~l~~le~~i~~Lq~el~~lee~i~~Le~E 902 (1388)
++..++..+..+.+++...+++...++.+
T Consensus 198 ~v~~Le~~id~le~eL~~~k~~~~~~~~e 226 (237)
T PF00261_consen 198 RVKKLEKEIDRLEDELEKEKEKYKKVQEE 226 (237)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333333333
No 81
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.96 E-value=0.45 Score=60.26 Aligned_cols=57 Identities=14% Similarity=0.249 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 853 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 853 ~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
++..++.....-..+......+++.++.+++.+..++...++.+.+|.++++.+-+.
T Consensus 427 e~r~lk~~~~~~~~e~~~~~~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~ 483 (594)
T PF05667_consen 427 EYRRLKEKASNRESESKQKLQEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKD 483 (594)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC
Confidence 333333333333344444556667777777777777777777777777777666554
No 82
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=95.96 E-value=3.1 Score=49.01 Aligned_cols=12 Identities=42% Similarity=0.559 Sum_probs=4.6
Q ss_pred HHHHHHHHHHHH
Q 000617 896 VSNLESENQVLR 907 (1388)
Q Consensus 896 i~~Le~E~~~Lk 907 (1388)
|..++.++..++
T Consensus 264 i~~le~el~~l~ 275 (312)
T PF00038_consen 264 IAELEEELAELR 275 (312)
T ss_dssp HHHHHHHHHHHH
T ss_pred hhccchhHHHHH
Confidence 333333333333
No 83
>PTZ00014 myosin-A; Provisional
Probab=95.88 E-value=0.015 Score=76.05 Aligned_cols=41 Identities=15% Similarity=0.053 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHHH
Q 000617 643 AAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARNE 683 (1388)
Q Consensus 643 ~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr~ 683 (1388)
..+..||++||||++|++|.+.+.+++.||+.+||++++++
T Consensus 778 ~~~~~iq~~~r~~~~r~~~~~~~~~~~~iQ~~~R~~l~~~~ 818 (821)
T PTZ00014 778 PLVSVLEALILKIKKKRKVRKNIKSLVRIQAHLRRHLVIAE 818 (821)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 35667777777777777777777777777777777777654
No 84
>KOG4643 consensus Uncharacterized coiled-coil protein [Function unknown]
Probab=95.87 E-value=1.6 Score=56.22 Aligned_cols=23 Identities=22% Similarity=0.243 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 746 QEAKNKLEKRVEELTWRLQIEKR 768 (1388)
Q Consensus 746 ~~~~~~Le~kv~~l~~~l~~e~~ 768 (1388)
+...+.|+.+++.|+.++.+...
T Consensus 407 eke~KnLs~k~e~Leeri~ql~q 429 (1195)
T KOG4643|consen 407 EKEHKNLSKKHEILEERINQLLQ 429 (1195)
T ss_pred HHHhHhHhHHHHHHHHHHHHHHH
Confidence 33344455555555555554443
No 85
>COG1579 Zn-ribbon protein, possibly nucleic acid-binding [General function prediction only]
Probab=95.86 E-value=1.6 Score=48.53 Aligned_cols=50 Identities=16% Similarity=0.223 Sum_probs=24.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAE 879 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le 879 (1388)
..++..++.....|+.++..+..+++.++.++..++.....++..+.+.+
T Consensus 95 ~~E~~~ak~r~~~le~el~~l~~~~~~l~~~i~~l~~~~~~~e~~~~e~~ 144 (239)
T COG1579 95 NIEIQIAKERINSLEDELAELMEEIEKLEKEIEDLKERLERLEKNLAEAE 144 (239)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444445555555555555555555555555555444444444443
No 86
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=95.78 E-value=1.7 Score=55.40 Aligned_cols=36 Identities=17% Similarity=0.086 Sum_probs=17.1
Q ss_pred HHHHHHHHHHhhcCCCcCCHHHH-HhccCCCCCHHHHHHH
Q 000617 1265 RHIRQAVGFLVIHQKPKKTLKEI-TNDLCPVLSIQQLYRI 1303 (1388)
Q Consensus 1265 ~~i~Qa~~lLq~~kk~~~~~~~i-~~~~C~~L~~~Qi~ki 1303 (1388)
..++.|++-++.. ....+++ ++.-=-+=+++||..-
T Consensus 850 tvLVeaAdkvV~~---~gkfEeLIVas~EIAAsTaQLVaA 886 (980)
T KOG0980|consen 850 TVLVEAADKVVTG---TGKFEELIVASQEIAASTAQLVAA 886 (980)
T ss_pred HHHHHHhhhHhcC---CCCcHHHHHhhhHHHHHHHHHHHH
Confidence 3456666666643 3334442 2111114566676644
No 87
>PRK03918 chromosome segregation protein; Provisional
Probab=95.74 E-value=2.8 Score=56.94 Aligned_cols=14 Identities=14% Similarity=0.086 Sum_probs=7.1
Q ss_pred CCCHHHHHHHHhhh
Q 000617 1316 SVSSEVISSMRVMM 1329 (1388)
Q Consensus 1316 ~v~~~~i~~v~~~~ 1329 (1388)
.+++.....+...+
T Consensus 824 ~lD~~~~~~l~~~l 837 (880)
T PRK03918 824 FLDEERRRKLVDIM 837 (880)
T ss_pred ccCHHHHHHHHHHH
Confidence 45555555554444
No 88
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=95.74 E-value=1.4 Score=52.10 Aligned_cols=58 Identities=16% Similarity=0.116 Sum_probs=27.2
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 706 YSYYKKLQRAIIVSQCGWRCRVARRE--LRKLKMAARETGALQEAKNKLEKRVEELTWRL 763 (1388)
Q Consensus 706 r~~~~~~~~a~i~iQ~~~R~~~ark~--l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l 763 (1388)
+++|+.+.+.....|+...+...+.+ ...++....++....+....|+.++.+|...+
T Consensus 301 ~ek~r~l~~D~nk~~~~~~~mk~K~~~~~g~l~kl~~eie~kEeei~~L~~~~d~L~~q~ 360 (622)
T COG5185 301 REKWRALKSDSNKYENYVNAMKQKSQEWPGKLEKLKSEIELKEEEIKALQSNIDELHKQL 360 (622)
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 44566666666666666655544332 11333333344444444444444444444433
No 89
>KOG1853 consensus LIS1-interacting protein NUDE [Cytoskeleton]
Probab=95.73 E-value=1.1 Score=48.67 Aligned_cols=22 Identities=36% Similarity=0.451 Sum_probs=11.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 886 QDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 886 q~el~~lee~i~~Le~E~~~Lk 907 (1388)
-..+++|+++...|..|++.-.
T Consensus 163 lesvqRLkdEardlrqelavr~ 184 (333)
T KOG1853|consen 163 LESVQRLKDEARDLRQELAVRT 184 (333)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555554443
No 90
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=95.72 E-value=0.95 Score=46.23 Aligned_cols=14 Identities=43% Similarity=0.575 Sum_probs=5.5
Q ss_pred HHHHHHHHHHHHHH
Q 000617 749 KNKLEKRVEELTWR 762 (1388)
Q Consensus 749 ~~~Le~kv~~l~~~ 762 (1388)
...++.++..+++.
T Consensus 19 ~dsle~~v~~LEre 32 (140)
T PF10473_consen 19 KDSLEDHVESLERE 32 (140)
T ss_pred HhhHHHHHHHHHHH
Confidence 33344444444333
No 91
>PRK04863 mukB cell division protein MukB; Provisional
Probab=95.70 E-value=17 Score=51.49 Aligned_cols=16 Identities=19% Similarity=0.331 Sum_probs=7.3
Q ss_pred HhhhcCCCCCcchhhH
Q 000617 1222 SLLLRRECCSFSNGEF 1237 (1388)
Q Consensus 1222 ~Ll~r~~~cs~s~G~q 1237 (1388)
.|..|+..++|..+..
T Consensus 963 ~~~~~~~~~~y~~~~~ 978 (1486)
T PRK04863 963 EVVQRRAHFSYEDAAE 978 (1486)
T ss_pred HHHHHHHhccHHHHHh
Confidence 3444444444444433
No 92
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=95.70 E-value=6.2 Score=47.40 Aligned_cols=23 Identities=22% Similarity=0.189 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 885 LQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 885 Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.+..++++..+-..|..+...++
T Consensus 222 ~q~~l~eL~~~~~~L~~~Ias~e 244 (420)
T COG4942 222 DQKKLEELRANESRLKNEIASAE 244 (420)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 93
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=95.67 E-value=8.9 Score=50.40 Aligned_cols=41 Identities=12% Similarity=0.080 Sum_probs=25.2
Q ss_pred hHHHHHHHHHHHHHHHHHhhHHhhhhhhhHHHhhhHHHHHH
Q 000617 642 EAAALKIQTNFRAYVAQRSYLTVRSSAMILQTGLRAMVARN 682 (1388)
Q Consensus 642 ~~Aai~IQ~~~Rg~~~R~~y~~~r~a~i~IQs~~Rg~laRr 682 (1388)
..++..-|..|..|..-+.-......+...++-++....+.
T Consensus 210 ~~~~q~e~~L~qLfhvE~~i~k~~~els~~~~ei~~~~~~~ 250 (1141)
T KOG0018|consen 210 KGKAQKEQFLWELFHVEACIEKANDELSRLNAEIPKLKERM 250 (1141)
T ss_pred HHHHHHHHHHHHHhhhhhhHhhhhHHHHHHhhhhHHHHhhh
Confidence 35667777778777766655555555555555555554444
No 94
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.67 E-value=0.01 Score=42.18 Aligned_cols=21 Identities=38% Similarity=0.672 Sum_probs=16.1
Q ss_pred hHHHHHHHHHHHHHHHHHhhH
Q 000617 642 EAAALKIQTNFRAYVAQRSYL 662 (1388)
Q Consensus 642 ~~Aai~IQ~~~Rg~~~R~~y~ 662 (1388)
..+|++||+.||||++|+.|+
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y~ 23 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRYK 23 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 367788888888888888773
No 95
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=95.59 E-value=2.1 Score=43.66 Aligned_cols=34 Identities=21% Similarity=0.486 Sum_probs=27.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 910 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~ 910 (1388)
..+.+...++.++..++..+..|..+|+.|-+|.
T Consensus 95 sw~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 95 SWEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777788888888899999999998888764
No 96
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=95.57 E-value=4.4 Score=46.20 Aligned_cols=28 Identities=32% Similarity=0.324 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 882 VDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 882 i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
++.-|..+..++.++.+|--|.+.|-|-
T Consensus 196 l~kRQ~yI~~LEsKVqDLm~EirnLLQl 223 (401)
T PF06785_consen 196 LDKRQAYIGKLESKVQDLMYEIRNLLQL 223 (401)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 5556666777777777777776666553
No 97
>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function.
Probab=95.53 E-value=2.6 Score=53.55 Aligned_cols=72 Identities=10% Similarity=0.254 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 838 AEVENLKGLLQSQTQTADEAKQAFTVSEAKNG---------ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 838 ~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~---------~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.+++.++.++.++..++..-+....+|..+++ ....++-+.-..++..++++.+.-.....|++|...+..
T Consensus 447 ~~ik~~r~~~k~~~~e~~~Kee~~~qL~~e~e~~~k~~~Rs~Yt~RIlEIv~NI~KQk~eI~KIl~DTr~lQkeiN~l~g 526 (594)
T PF05667_consen 447 QEIKELREEIKEIEEEIRQKEELYKQLVKELEKLPKDVNRSAYTRRILEIVKNIRKQKEEIEKILSDTRELQKEINSLTG 526 (594)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444555555555555544444444444443 333455555555555556666555566666666555554
Q ss_pred H
Q 000617 909 Q 909 (1388)
Q Consensus 909 q 909 (1388)
+
T Consensus 527 k 527 (594)
T PF05667_consen 527 K 527 (594)
T ss_pred H
Confidence 3
No 98
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=95.52 E-value=1.7 Score=55.47 Aligned_cols=12 Identities=33% Similarity=0.620 Sum_probs=8.4
Q ss_pred ccCCCCCCcccc
Q 000617 1343 LDDDSSIPFTVD 1354 (1388)
Q Consensus 1343 lD~~~~~Pf~~~ 1354 (1388)
|.++.++||-+-
T Consensus 594 L~~~pcipffy~ 605 (617)
T PF15070_consen 594 LGSNPCIPFFYR 605 (617)
T ss_pred CCCCCcccceee
Confidence 777778888543
No 99
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.51 E-value=1.2 Score=62.95 Aligned_cols=21 Identities=33% Similarity=0.475 Sum_probs=17.6
Q ss_pred eEEEEecCcCCchHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+|+|.+|||||+....|.
T Consensus 29 ~~~~I~G~NGaGKTTil~ai~ 49 (1311)
T TIGR00606 29 PLTILVGPNGAGKTTIIECLK 49 (1311)
T ss_pred ceEEEECCCCCCHHHHHHHHH
Confidence 467999999999998777665
No 100
>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]
Probab=95.47 E-value=9.2 Score=48.26 Aligned_cols=221 Identities=16% Similarity=0.145 Sum_probs=0.0
Q ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH
Q 000617 676 RAMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKLQ-----------RAIIVSQCGWRCRVARRELRKLKMAARETGA 744 (1388)
Q Consensus 676 Rg~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~~~~~~-----------~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~ 744 (1388)
|-.+.-+.+.+.-.....++-|+.-+.-..-+.|++.. +.+..+| .++...+.+..+
T Consensus 57 rdalhe~lvdkaglneSviie~sk~vstqetriyRrdv~llEddlk~~~sQiriLQ------------n~c~~lE~ekq~ 124 (1265)
T KOG0976|consen 57 RDALHESLVDKAGLNESVIIEQSKKVSTQETRIYRRDVNLLEDDLKHHESQIRILQ------------NKCLRLEMEKQK 124 (1265)
T ss_pred HHHHHHHHHHHhhccchhhhhhcchhhHHHHHHHHHHHHHhHHHHHHHHHHHHHHH------------HHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 745 LQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQ-----------------EIAKLQEALHAMQLRVDDANSLVIKERE 807 (1388)
Q Consensus 745 l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~-----------------E~~~L~~~le~l~~~l~~~~~~l~~e~~ 807 (1388)
++.....++..+.+.+-+++.-......++.++.+ ++.++..++...-.+....+..+....+
T Consensus 125 lQ~ti~~~q~d~ke~etelE~~~srlh~le~eLsAk~~eIf~~~~~L~nk~~~lt~~~~q~~tkl~e~~~en~~le~k~~ 204 (1265)
T KOG0976|consen 125 LQDTIQGAQDDKKENEIEIENLNSRLHKLEDELSAKAHDIFMIGEDLHDKNEELNEFNMEFQTKLAEANREKKALEEKLE 204 (1265)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 808 AARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQD 887 (1388)
Q Consensus 808 ~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~ 887 (1388)
.......+-.....+.........++-+-..+...-++-+..+++....++.+...++......+.+-.+++.....|.+
T Consensus 205 k~~e~~~~nD~~sle~~~~q~~tq~vl~ev~QLss~~q~ltp~rk~~s~i~E~d~~lq~sak~ieE~m~qlk~kns~L~~ 284 (1265)
T KOG0976|consen 205 KFKEDLIEKDQKSLELHKDQENTQKVLKEVMQLSSQKQTLTPLRKTCSMIEEQDMDLQASAKEIEEKMRQLKAKNSVLGD 284 (1265)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000617 888 SVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 888 el~~lee~i~~Le~E~~~Lkq 908 (1388)
++.+.++.+..++.++..++|
T Consensus 285 ElSqkeelVk~~qeeLd~lkq 305 (1265)
T KOG0976|consen 285 ELSQKEELVKELQEELDTLKQ 305 (1265)
T ss_pred hhhHHHHHHHHHHHHHHHHHH
No 101
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=95.46 E-value=13 Score=48.79 Aligned_cols=21 Identities=24% Similarity=0.283 Sum_probs=14.1
Q ss_pred HHHHHHHHHHHHHHHHhcCcc
Q 000617 171 DQEQEAIFRVVAAILHLGNID 191 (1388)
Q Consensus 171 ~~~~~~i~~ilaaILhLGni~ 191 (1388)
.+....+.-+|+|.||=|...
T Consensus 744 ~e~C~~l~~~lsa~l~n~a~~ 764 (1758)
T KOG0994|consen 744 DEVCQNLDNSLSALLHNGASM 764 (1758)
T ss_pred chhhhhhhhhHHHHHhcCccc
Confidence 344556777888888877544
No 102
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=95.42 E-value=1.6 Score=50.03 Aligned_cols=61 Identities=18% Similarity=0.299 Sum_probs=31.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQ 890 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~ 890 (1388)
..++..|.+++..++..+..+-.+.+++...+...+..-..+..++.+++.+..+....+.
T Consensus 233 QEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdkY~E~~~mL~ 293 (306)
T PF04849_consen 233 QEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDKYAECMAMLH 293 (306)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666655555555444444444444444333333333
No 103
>PRK01156 chromosome segregation protein; Provisional
Probab=95.42 E-value=1.5 Score=59.50 Aligned_cols=23 Identities=13% Similarity=0.304 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHhcCCCHHH
Q 000617 1181 QSIVKSLNNYLKIMRANYVPSFL 1203 (1388)
Q Consensus 1181 ~~il~~L~~~~~~l~~~~V~~~l 1203 (1388)
...+..|+.+...+...+++..+
T Consensus 732 ~~~~~~l~~~r~~l~k~~~~~~I 754 (895)
T PRK01156 732 KKAIGDLKRLREAFDKSGVPAMI 754 (895)
T ss_pred HHHHHHHHHHHHHhhhccchHHH
Confidence 34455556666666666665533
No 104
>TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type. SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle.
Probab=95.41 E-value=20 Score=50.38 Aligned_cols=9 Identities=11% Similarity=0.194 Sum_probs=4.1
Q ss_pred hHHHHHhhc
Q 000617 531 FYEFVNRFG 539 (1388)
Q Consensus 531 ~~~F~~ry~ 539 (1388)
+.+++..++
T Consensus 124 ~~~~l~~~~ 132 (1179)
T TIGR02168 124 IQDLFLDTG 132 (1179)
T ss_pred HHHHHhccC
Confidence 344444444
No 105
>PRK09039 hypothetical protein; Validated
Probab=95.40 E-value=0.35 Score=57.52 Aligned_cols=139 Identities=15% Similarity=0.174 Sum_probs=58.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccc
Q 000617 745 LQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETP 824 (1388)
Q Consensus 745 l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~ 824 (1388)
+.+...+.+.++.+++.++.. ..++..-.......++..+.++..+++.++... ..++...........
T Consensus 44 Ls~~i~~~~~eL~~L~~qIa~----L~e~L~le~~~~~~l~~~l~~l~~~l~~a~~~r----~~Le~~~~~~~~~~~--- 112 (343)
T PRK09039 44 LSREISGKDSALDRLNSQIAE----LADLLSLERQGNQDLQDSVANLRASLSAAEAER----SRLQALLAELAGAGA--- 112 (343)
T ss_pred HHHHHhhHHHHHHHHHHHHHH----HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHhhhhhhcc---
Confidence 444555555555555555543 111222222444555666666666555444332 222222211100011
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 825 VIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 897 (1388)
Q Consensus 825 ~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~ 897 (1388)
..+.+...+..+...++....+...++..+..++..++.....++..+..+|.+..+.+.++++++..+.
T Consensus 113 ---~~~~~~~~l~~~L~~~k~~~se~~~~V~~L~~qI~aLr~Qla~le~~L~~ae~~~~~~~~~i~~L~~~L~ 182 (343)
T PRK09039 113 ---AAEGRAGELAQELDSEKQVSARALAQVELLNQQIAALRRQLAALEAALDASEKRDRESQAKIADLGRRLN 182 (343)
T ss_pred ---hHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 1234444444444444444444444444444444444444444444444444444444444444444433
No 106
>TIGR00606 rad50 rad50. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=95.40 E-value=4.6 Score=57.10 Aligned_cols=23 Identities=9% Similarity=0.173 Sum_probs=10.7
Q ss_pred HHHHHHHHHhhhhccCCccccch
Q 000617 1019 FDRIIQTISGAIEVHDNNDRLSY 1041 (1388)
Q Consensus 1019 l~~ii~~I~~~v~~~~d~~~l~f 1041 (1388)
+++||..+...+-...+++.+.+
T Consensus 1142 ~n~~~~~~w~~~~~~~~~~~i~~ 1164 (1311)
T TIGR00606 1142 INKIIRDLWRSTYRGQDIEYIEI 1164 (1311)
T ss_pred HHHHHHHHHHHHcCccHHHHhhc
Confidence 34444444444444444454544
No 107
>PF08317 Spc7: Spc7 kinetochore protein; InterPro: IPR013253 This entry consists of cell division proteins which are required for kinetochore-spindle association [].
Probab=95.31 E-value=1.5 Score=51.86 Aligned_cols=10 Identities=20% Similarity=0.361 Sum_probs=5.5
Q ss_pred cchHHHHHhh
Q 000617 529 RTFYEFVNRF 538 (1388)
Q Consensus 529 ~~~~~F~~ry 538 (1388)
++..+|+.--
T Consensus 14 isL~~FL~~~ 23 (325)
T PF08317_consen 14 ISLQDFLNMT 23 (325)
T ss_pred cCHHHHHHHh
Confidence 5566666533
No 108
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=95.24 E-value=6.4 Score=45.81 Aligned_cols=137 Identities=20% Similarity=0.230 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcc--ccccchhhhhhHHHHHHHHHHHHHHHHHHHH
Q 000617 773 LEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPV--IKETPVIIQDTEKINSLTAEVENLKGLLQSQ 850 (1388)
Q Consensus 773 le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~--~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l 850 (1388)
+-...+.++..|+.+++++...+.+++....-.++............ .....+..+.-.+++.++..+..|+.++..+
T Consensus 73 lL~~sre~Nk~L~~Ev~~Lrqkl~E~qGD~KlLR~~la~~r~~~~~~~~~~~~~ere~lV~qLEk~~~q~~qLe~d~qs~ 152 (319)
T PF09789_consen 73 LLSESREQNKKLKEEVEELRQKLNEAQGDIKLLREKLARQRVGDEGIGARHFPHEREDLVEQLEKLREQIEQLERDLQSL 152 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhhhhhhccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344556667777777777777776655433333222211110000 0000111112233444444555555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH----HH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 851 TQTADEAKQAFTVSEAKNGELTKKLKDA----EK---RVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 851 ~~~~~ele~~~~~l~~~~~~l~~~l~~l----e~---~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
..+.+|+..+....+...+.+..++.-+ +. .++.|-.|..-+.+.+..++.|..-+++.
T Consensus 153 lDEkeEl~~ERD~yk~K~~RLN~ELn~~L~g~~~rivDIDaLi~ENRyL~erl~q~qeE~~l~k~~ 218 (319)
T PF09789_consen 153 LDEKEELVTERDAYKCKAHRLNHELNYILNGDENRIVDIDALIMENRYLKERLKQLQEEKELLKQT 218 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5555555555444444444333333211 11 25566667777777777777777776654
No 109
>smart00015 IQ Short calmodulin-binding motif containing conserved Ile and Gln residues. Calmodulin-binding motif.
Probab=95.22 E-value=0.018 Score=40.93 Aligned_cols=20 Identities=45% Similarity=0.532 Sum_probs=11.8
Q ss_pred hhHHHHHHHHHhhHHHHHHH
Q 000617 594 GNAARKIQRQTRTYIARKEF 613 (1388)
Q Consensus 594 ~~aa~~IQ~~~R~~~~Rk~~ 613 (1388)
..+|+.||+.||||++|++|
T Consensus 3 ~~aa~~IQa~~Rg~~~r~~y 22 (26)
T smart00015 3 TRAAIIIQAAWRGYLARKRY 22 (26)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 34556666666666666655
No 110
>TIGR03185 DNA_S_dndD DNA sulfur modification protein DndD. This model describes the DndB protein encoded by an operon associated with a sulfur-containing modification to DNA. The operon is sporadically distributed in bacteria, much like some restriction enzyme operons. DndD is described as a putative ATPase. The small number of examples known so far include species from among the Firmicutes, Actinomycetes, Proteobacteria, and Cyanobacteria.
Probab=95.06 E-value=4.8 Score=52.55 Aligned_cols=44 Identities=20% Similarity=0.246 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 864 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 864 l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
+......+.+++..++.++..++.++..+++++..++++...+.
T Consensus 426 l~e~l~~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 469 (650)
T TIGR03185 426 LLEELGEAQNELFRSEAEIEELLRQLETLKEAIEALRKTLDEKT 469 (650)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444445445544444433
No 111
>KOG0995 consensus Centromere-associated protein HEC1 [Cell cycle control, cell division, chromosome partitioning]
Probab=94.97 E-value=2.8 Score=51.48 Aligned_cols=19 Identities=26% Similarity=0.445 Sum_probs=10.4
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000617 739 ARETGALQEAKNKLEKRVE 757 (1388)
Q Consensus 739 a~e~~~l~~~~~~Le~kv~ 757 (1388)
+.++..++.....+++++.
T Consensus 234 ~~~ie~l~~~n~~l~e~i~ 252 (581)
T KOG0995|consen 234 ANEIEDLKKTNRELEEMIN 252 (581)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 4455555555555555555
No 112
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.95 E-value=7.9 Score=48.12 Aligned_cols=25 Identities=16% Similarity=0.324 Sum_probs=16.1
Q ss_pred HHHHHhhHHHHHHHHHhhhhHHHHH
Q 000617 600 IQRQTRTYIARKEFILLRNAAVILQ 624 (1388)
Q Consensus 600 IQ~~~R~~~~Rk~~~~~r~aai~iQ 624 (1388)
+--..-.|+.|-+|+........++
T Consensus 47 LNDRLA~YIekVR~LEaqN~~L~~d 71 (546)
T KOG0977|consen 47 LNDRLAVYIEKVRFLEAQNRKLEHD 71 (546)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445557888888887766555443
No 113
>COG4942 Membrane-bound metallopeptidase [Cell division and chromosome partitioning]
Probab=94.93 E-value=12 Score=45.15 Aligned_cols=38 Identities=24% Similarity=0.452 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 870 ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 870 ~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
++...+..-++++++|...-..++..|..++.+...-+
T Consensus 214 ~l~~~l~~~q~~l~eL~~~~~~L~~~Ias~e~~aA~~r 251 (420)
T COG4942 214 QLNSELSADQKKLEELRANESRLKNEIASAEAAAAKAR 251 (420)
T ss_pred HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 33344444555566666666666666666665544333
No 114
>COG4372 Uncharacterized protein conserved in bacteria with the myosin-like domain [Function unknown]
Probab=94.84 E-value=10 Score=44.12 Aligned_cols=21 Identities=24% Similarity=0.403 Sum_probs=7.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000617 872 TKKLKDAEKRVDELQDSVQRL 892 (1388)
Q Consensus 872 ~~~l~~le~~i~~Lq~el~~l 892 (1388)
+.+++.+|.+...++.+++++
T Consensus 258 e~~lq~lEt~q~~leqeva~l 278 (499)
T COG4372 258 ERQLQRLETAQARLEQEVAQL 278 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 115
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.77 E-value=29 Score=48.96 Aligned_cols=113 Identities=12% Similarity=0.190 Sum_probs=55.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhh-h
Q 000617 750 NKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVII-Q 828 (1388)
Q Consensus 750 ~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~-~ 828 (1388)
..+......++..+...+.....++....+.+.++..+++++...+..+...+..+....+.........+....... .
T Consensus 769 ~~l~~e~~~L~~~l~~lQt~~~~~e~s~~~~k~~~e~~i~eL~~el~~lk~klq~~~~~~r~l~~~~~~~l~~~~~~i~~ 848 (1822)
T KOG4674|consen 769 EKLSAEQESLQLLLDNLQTQKNELEESEMATKDKCESRIKELERELQKLKKKLQEKSSDLRELTNSLEKQLENAQNLVDE 848 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 334444444444444444444444445555566666777777777777776666555555555554444444433222 2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFT 862 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~ 862 (1388)
....+..+..++..++..++.++.++.+|++++.
T Consensus 849 ~~~~~~~~~~~l~~~~~~~~~le~k~~eL~k~l~ 882 (1822)
T KOG4674|consen 849 LESELKSLLTSLDSVSTNIAKLEIKLSELEKRLK 882 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2333334444444444444444444444444433
No 116
>KOG0963 consensus Transcription factor/CCAAT displacement protein CDP1 [Transcription]
Probab=94.76 E-value=15 Score=45.70 Aligned_cols=39 Identities=18% Similarity=0.290 Sum_probs=22.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHH
Q 000617 871 LTKKLKDAEKRVDELQDSVQRLAEK------VSNLESENQVLRQQ 909 (1388)
Q Consensus 871 l~~~l~~le~~i~~Lq~el~~lee~------i~~Le~E~~~Lkqq 909 (1388)
...++..+++++.....++++++++ ..++..|+..|+.-
T Consensus 315 ~~~qI~~le~~l~~~~~~leel~~kL~~~sDYeeIK~ELsiLk~i 359 (629)
T KOG0963|consen 315 HKAQISALEKELKAKISELEELKEKLNSRSDYEEIKKELSILKAI 359 (629)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHHHHHHHHHh
Confidence 3344445555555555555555554 44677788888764
No 117
>KOG0980 consensus Actin-binding protein SLA2/Huntingtin-interacting protein Hip1 [Cytoskeleton]
Probab=94.75 E-value=19 Score=46.58 Aligned_cols=12 Identities=33% Similarity=0.257 Sum_probs=9.0
Q ss_pred cCCCCCHHHHHH
Q 000617 1291 LCPVLSIQQLYR 1302 (1388)
Q Consensus 1291 ~C~~L~~~Qi~k 1302 (1388)
.++.||+.||++
T Consensus 933 DFS~ls~h~~K~ 944 (980)
T KOG0980|consen 933 DFSSLSLHQLKT 944 (980)
T ss_pred ccccccHHHHHH
Confidence 467888888765
No 118
>PF04091 Sec15: Exocyst complex subunit Sec15-like ; InterPro: IPR007225 Sec15 is a component of the exocyst complex involved in the docking of exocystic vesicles with a fusion site on the plasma membrane. The exocyst complex is composed of Sec3, Sec5, Sec6, Sec8, Sec10, Sec15, Exo70 and Exo84.; GO: 0006904 vesicle docking involved in exocytosis, 0000145 exocyst; PDB: 2A2F_X.
Probab=94.62 E-value=0.24 Score=58.14 Aligned_cols=132 Identities=11% Similarity=0.082 Sum_probs=74.0
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhc-CCCCCcchhhHHhhchhHHHHHHhhcCc
Q 000617 1176 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLR-RECCSFSNGEFVKAGLAELEQWCHDSTE 1254 (1388)
Q Consensus 1176 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r-~~~cs~s~G~qIr~nls~LE~W~~~~~~ 1254 (1388)
+...+.+++.+|..++... ...+|+.+..-+....|.+|+..+.+-|+.. -+..+-.--.++...|..+|.++.+...
T Consensus 177 ps~yi~dli~fL~~~f~s~-l~~LP~~v~~~~~~~a~~his~~l~~~Ll~~~vk~in~~al~~~~~Dv~~lE~f~~~~~~ 255 (311)
T PF04091_consen 177 PSDYINDLIQFLETTFSST-LTNLPPSVKQLVYFSACDHISESLLDLLLSDDVKRINMNALQNFDLDVKYLESFADSLPV 255 (311)
T ss_dssp --HHHHHHHHHHHHHHHTT-TTTSH-HHHHHHHHHHHHHHHHHHHHHHT---------TTHHHHHHHHHHHHHHHTT-SS
T ss_pred CCHHHHHHHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHHHHHHHHHHhcCCcccccCHHHHHHHHHHHHHHHHHHHhCcC
Confidence 4567889999999998654 5789999999999999999999999998753 3455555567899999999999998711
Q ss_pred --ccccchHHHhHHHHHHHHHHhhcCCCcCCHHHHHhccCCCCCHHHHHHHHhcCc
Q 000617 1255 --EFAGSAWDELRHIRQAVGFLVIHQKPKKTLKEITNDLCPVLSIQQLYRISTMYW 1308 (1388)
Q Consensus 1255 --~~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C~~L~~~Qi~kiL~~Y~ 1308 (1388)
...+....+|..++|.++||....-...-.-.++..-.+.++|..+..||..|+
T Consensus 256 ~~~~~~~L~~~F~eLrQlvdLl~s~~~~~y~d~~~r~~kY~~v~p~~~~~lLeK~k 311 (311)
T PF04091_consen 256 PGNNIPSLRETFAELRQLVDLLLSDDWEEYLDPGIRERKYSRVKPEKAIKLLEKLK 311 (311)
T ss_dssp SS--SSTTGGGGHHHHHHHHHHH---------------------------------
T ss_pred cccccccHHHHHHHHHHHHHHHhcCCHHHHhCccccccccCCCCHHHHHHHHHhcC
Confidence 124566789999999999999763222211135555678999999999888764
No 119
>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]
Probab=94.61 E-value=24 Score=47.14 Aligned_cols=46 Identities=33% Similarity=0.340 Sum_probs=24.0
Q ss_pred HHhHHHHHHHHHHhhcCCCcCCHHHHHhccC---CCCCHHHHHHHHhcCccC
Q 000617 1262 DELRHIRQAVGFLVIHQKPKKTLKEITNDLC---PVLSIQQLYRISTMYWDD 1310 (1388)
Q Consensus 1262 ~~L~~i~Qa~~lLq~~kk~~~~~~~i~~~~C---~~L~~~Qi~kiL~~Y~~d 1310 (1388)
+.|.|..+-+.|-+.| ++.+|..|- ..- -.||+.=|.=.|.+|+|.
T Consensus 1170 DslDPFseGV~FSVrP--pKKSWK~I~-NLSGGEKTLSSLALVFALH~YkPT 1218 (1293)
T KOG0996|consen 1170 DSLDPFSEGVMFSVRP--PKKSWKNIS-NLSGGEKTLSSLALVFALHHYKPT 1218 (1293)
T ss_pred ccCCCcccCceEEeeC--chhhhhhcc-cCCcchhHHHHHHHHHHHHccCCC
Confidence 4455555555555555 455555441 111 255666666666666654
No 120
>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope. They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....
Probab=94.52 E-value=13 Score=43.77 Aligned_cols=31 Identities=23% Similarity=0.331 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
..+..+..++.++..+...+.....+.+.|-
T Consensus 259 ~~~~~i~~le~el~~l~~~~~~~~~ey~~Ll 289 (312)
T PF00038_consen 259 EYQAEIAELEEELAELREEMARQLREYQELL 289 (312)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhhhccchhHHHHHHHHHHHHHHHHHHH
Confidence 3444455555555555555555555544444
No 121
>PF04849 HAP1_N: HAP1 N-terminal conserved region; InterPro: IPR006933 This family is defined by an N-terminal conserved region found in several huntingtin-associated protein 1 (HAP1) homologues. HAP1 binds to huntingtin in a polyglutamine repeat-length-dependent manner. However, its possible role in the pathogenesis of Huntingtons disease is unclear. This family also includes a similar N-terminal conserved region from hypothetical protein products of ALS2CR3 genes found in the human juvenile amyotrophic lateral sclerosis critical region 2q33-2q34 [].
Probab=94.46 E-value=7.9 Score=44.68 Aligned_cols=77 Identities=19% Similarity=0.258 Sum_probs=40.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+.+...++..|.+++..-.++......++..|..+.-+++.+++..=.+.++|...+...++.-..|..|++.|+.+
T Consensus 208 L~~An~qia~LseELa~k~Ee~~rQQEEIt~LlsqivdlQ~r~k~~~~EnEeL~q~L~~ske~Q~~L~aEL~elqdk 284 (306)
T PF04849_consen 208 LSEANQQIASLSEELARKTEENRRQQEEITSLLSQIVDLQQRCKQLAAENEELQQHLQASKESQRQLQAELQELQDK 284 (306)
T ss_pred hhhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444445555554444555555555555555555555555555555555555555555555566666666653
No 122
>KOG4673 consensus Transcription factor TMF, TATA element modulatory factor [Transcription]
Probab=94.43 E-value=18 Score=45.12 Aligned_cols=227 Identities=18% Similarity=0.171 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhHHHHHHHHHH------HHHHHHHHHHHHHHH
Q 000617 677 AMVARNEFRLRKRTKAAIIAQAQWRCHQAYSYYKKL---QRAIIVSQCGWRCRVARREL------RKLKMAARETGALQE 747 (1388)
Q Consensus 677 g~laRr~~~~~~~~~aAi~IQ~~~R~~~~r~~~~~~---~~a~i~iQ~~~R~~~ark~l------~~lk~~a~e~~~l~~ 747 (1388)
..+.++-+.-.+...|+.+-|+..|.-++-+--+.. ..-+|.--..--.++-++.+ ++|+...++...+.+
T Consensus 412 a~lEkKvqa~~kERDalr~e~kslk~ela~~l~~DeLaEkdE~I~~lm~EGEkLSK~ql~qs~iIkKLRAk~ke~etl~~ 491 (961)
T KOG4673|consen 412 ATLEKKVQALTKERDALRREQKSLKKELAAALLKDELAEKDEIINQLMAEGEKLSKKQLAQSAIIKKLRAKIKEAETLEE 491 (961)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhhhhhHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhh
Q 000617 748 AKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVII 827 (1388)
Q Consensus 748 ~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~ 827 (1388)
++.++-.++..-..++..-.+...+++....+-+.++++.+...+......+..+......+............+++..
T Consensus 492 K~ge~i~~L~sE~~~lk~il~~Kee~Ek~~~E~I~k~~ae~~rq~~~~~~sr~~~~~le~~~~a~qat~d~a~~Dlqk~- 570 (961)
T KOG4673|consen 492 KKGELITKLQSEENKLKSILRDKEETEKLLQETIEKHQAELTRQKDYYSNSRALAAALEAQALAEQATNDEARSDLQKE- 570 (961)
T ss_pred HhhhHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhhhhHHHH-
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHH
Q 000617 828 QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTV----SEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNL 899 (1388)
Q Consensus 828 ~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~----l~~~~~~l~~~l~~le~~i~~Lq~el~~lee----~i~~L 899 (1388)
...+-+++..+-..|-+++.+|...+...+..... ++.++++++++++..|..+..+..++-.... +|..|
T Consensus 571 -nrlkQdear~~~~~lvqqv~dLR~~L~~~Eq~aarrEd~~R~Ei~~LqrRlqaaE~R~eel~q~v~~TTrPLlRQIE~l 649 (961)
T KOG4673|consen 571 -NRLKQDEARERESMLVQQVEDLRQTLSKKEQQAARREDMFRGEIEDLQRRLQAAERRCEELIQQVPETTRPLLRQIEAL 649 (961)
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHH
Q ss_pred HHHHHH
Q 000617 900 ESENQV 905 (1388)
Q Consensus 900 e~E~~~ 905 (1388)
+.-+..
T Consensus 650 Q~tl~~ 655 (961)
T KOG4673|consen 650 QETLSK 655 (961)
T ss_pred HHHHhh
No 123
>COG3883 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=94.40 E-value=8.5 Score=43.52 Aligned_cols=26 Identities=23% Similarity=0.372 Sum_probs=19.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 778 SQEIAKLQEALHAMQLRVDDANSLVI 803 (1388)
Q Consensus 778 ~~E~~~L~~~le~l~~~l~~~~~~l~ 803 (1388)
..++++++.++++++..+.+.++.+.
T Consensus 79 ~~eik~l~~eI~~~~~~I~~r~~~l~ 104 (265)
T COG3883 79 KAEIKKLQKEIAELKENIVERQELLK 104 (265)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 35777788888888888877776663
No 124
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=94.39 E-value=0.034 Score=55.40 Aligned_cols=23 Identities=39% Similarity=0.622 Sum_probs=21.4
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.|+|+|.||||||+.++.+.+.+
T Consensus 1 vI~I~G~~gsGKST~a~~La~~~ 23 (121)
T PF13207_consen 1 VIIISGPPGSGKSTLAKELAERL 23 (121)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999999976
No 125
>KOG4674 consensus Uncharacterized conserved coiled-coil protein [Function unknown]
Probab=94.38 E-value=31 Score=48.68 Aligned_cols=59 Identities=17% Similarity=0.187 Sum_probs=27.0
Q ss_pred HHHHHHHHHHHHHHHhhHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 706 YSYYKKLQRAIIVSQCGWRCRVARRELR--KLKMAARETGALQEAKNKLEKRVEELTWRLQ 764 (1388)
Q Consensus 706 r~~~~~~~~a~i~iQ~~~R~~~ark~l~--~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~ 764 (1388)
...+..++..+..|+.-.+...-...|. +++.....+...++....|+.+-..++.-+.
T Consensus 660 ~e~~~~l~~ev~~ir~~l~k~~~~~~fA~ekle~L~~~ie~~K~e~~tL~er~~~l~~~i~ 720 (1822)
T KOG4674|consen 660 QEDFDSLQKEVTAIRSQLEKLKNELNLAKEKLENLEKNLELTKEEVETLEERNKNLQSTIS 720 (1822)
T ss_pred HHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444445555544444333333223332 2233344555555555555555555554444
No 126
>PRK01156 chromosome segregation protein; Provisional
Probab=94.35 E-value=4.9 Score=54.64 Aligned_cols=32 Identities=13% Similarity=0.345 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 876 KDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 876 ~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.++..++..++.++..+..++..++.+...|+
T Consensus 412 ~e~~~~~~~l~~~i~~l~~~i~~l~~~~~el~ 443 (895)
T PRK01156 412 NEINVKLQDISSKVSSLNQRIRALRENLDELS 443 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444444444444
No 127
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=94.33 E-value=9.6 Score=48.02 Aligned_cols=24 Identities=33% Similarity=0.371 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 755 RVEELTWRLQIEKRLRTDLEEAKS 778 (1388)
Q Consensus 755 kv~~l~~~l~~e~~~~~~le~~~~ 778 (1388)
..+++...+.-.+..+..+++...
T Consensus 116 Eae~Lraala~ae~~R~~lEE~~q 139 (739)
T PF07111_consen 116 EAEELRAALAGAEVVRKNLEEGSQ 139 (739)
T ss_pred hHHHHHHHHhhHHHHHHhhHHHHH
Confidence 344444433333333333333333
No 128
>PF15070 GOLGA2L5: Putative golgin subfamily A member 2-like protein 5
Probab=94.25 E-value=23 Score=45.52 Aligned_cols=34 Identities=21% Similarity=0.446 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 868 NGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 868 ~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
+.++..++.+++.++..+...++.....+..|+.
T Consensus 197 ~keL~~kl~~l~~~l~~~~e~le~K~qE~~~Lq~ 230 (617)
T PF15070_consen 197 KKELQKKLGELQEKLHNLKEKLELKSQEAQSLQE 230 (617)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 3334444444444444444444333333333333
No 129
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=94.24 E-value=4.9 Score=44.13 Aligned_cols=25 Identities=28% Similarity=0.363 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 778 SQEIAKLQEALHAMQLRVDDANSLV 802 (1388)
Q Consensus 778 ~~E~~~L~~~le~l~~~l~~~~~~l 802 (1388)
..|+..|.+-+...+.++.+++..+
T Consensus 54 ~~eN~~L~epL~~a~~e~~eL~k~L 78 (201)
T PF13851_consen 54 SQENKRLSEPLKKAEEEVEELRKQL 78 (201)
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 3455555555555555555555444
No 130
>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]
Probab=94.23 E-value=6.3 Score=48.96 Aligned_cols=24 Identities=17% Similarity=0.268 Sum_probs=11.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 779 QEIAKLQEALHAMQLRVDDANSLV 802 (1388)
Q Consensus 779 ~E~~~L~~~le~l~~~l~~~~~~l 802 (1388)
.+.++++..+..+..+++++...+
T Consensus 106 ~~ra~~e~ei~kl~~e~~elr~~~ 129 (546)
T KOG0977|consen 106 RERAKLEIEITKLREELKELRKKL 129 (546)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHH
Confidence 344455555555555555554444
No 131
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=94.18 E-value=10 Score=41.29 Aligned_cols=30 Identities=17% Similarity=0.278 Sum_probs=16.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFT 862 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~ 862 (1388)
-++|..++..++..+++-..++..++.++.
T Consensus 120 ReeL~~kL~~~~~~l~~~~~ki~~Lek~le 149 (194)
T PF15619_consen 120 REELQRKLSQLEQKLQEKEKKIQELEKQLE 149 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555555555555555555443
No 132
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=94.17 E-value=5.1 Score=49.22 Aligned_cols=22 Identities=9% Similarity=0.238 Sum_probs=10.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 887 DSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 887 ~el~~lee~i~~Le~E~~~Lkq 908 (1388)
+++...+.++..++.+...++.
T Consensus 246 ~~l~~~~~~l~~~~~~l~~~~~ 267 (423)
T TIGR01843 246 EELTEAQARLAELRERLNKARD 267 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444444455544444443
No 133
>PF04156 IncA: IncA protein; InterPro: IPR007285 Chlamydia trachomatis is an obligate intracellular bacterium that develops within a parasitophorous vacuole termed an inclusion. The inclusion is nonfusogenic with lysosomes but intercepts lipids from a host cell exocytic pathway. Initiation of chlamydial development is concurrent with modification of the inclusion membrane by a set of C. trachomatis-encoded proteins collectively designated Incs. One of these Incs, IncA (Inclusion membrane protein A), is functionally associated with the homotypic fusion of inclusions [].
Probab=94.11 E-value=2.4 Score=46.17 Aligned_cols=30 Identities=23% Similarity=0.540 Sum_probs=13.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 873 KKLKDAEKRVDELQDSVQRLAEKVSNLESE 902 (1388)
Q Consensus 873 ~~l~~le~~i~~Lq~el~~lee~i~~Le~E 902 (1388)
.+...+.....+++....++.+.+.+++.-
T Consensus 158 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~l 187 (191)
T PF04156_consen 158 EEVQELRSQLERLQENLQQLEEKIQELQEL 187 (191)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444444455555555554444443
No 134
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=94.09 E-value=0.37 Score=52.63 Aligned_cols=33 Identities=30% Similarity=0.374 Sum_probs=20.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 876 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 876 ~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
..+..++..|+-+...+++++.+|+.||..|-+
T Consensus 147 e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~ 179 (194)
T PF08614_consen 147 EILQDELQALQLQLNMLEEKLRKLEEENRELVE 179 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555556666666666777777766654
No 135
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=94.05 E-value=11 Score=41.27 Aligned_cols=36 Identities=22% Similarity=0.252 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 872 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 872 ~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
..++..++..++..+-.+..+++.+.....||..|-
T Consensus 160 ~~e~~aLqa~lkk~e~~~~SLe~~LeQK~kEn~ELt 195 (207)
T PF05010_consen 160 QAELLALQASLKKEEMKVQSLEESLEQKTKENEELT 195 (207)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444555555555555555555555555555554
No 136
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=94.05 E-value=7 Score=50.99 Aligned_cols=80 Identities=21% Similarity=0.266 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHH---HHHHHH--HHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL--KDAEKRVDELQD---SVQRLA--EKVSNLESE 902 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l--~~le~~i~~Lq~---el~~le--e~i~~Le~E 902 (1388)
...+.+|..++...+.++..+...++..+++...|+-+..-+.+++ +..|.+...--. ..++++ .+|.+|++|
T Consensus 119 ~~~i~~l~~~~~~~e~~~~~l~~~l~~~eken~~Lkye~~~~~keleir~~E~~~~~~~ae~a~kqhle~vkkiakLEaE 198 (769)
T PF05911_consen 119 EKLIAELSEEKSQAEAEIEDLMARLESTEKENSSLKYELHVLSKELEIRNEEREYSRRAAEAASKQHLESVKKIAKLEAE 198 (769)
T ss_pred HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445566666666666666666666666666665555554443333 222222221111 111222 389999999
Q ss_pred HHHHHHH
Q 000617 903 NQVLRQQ 909 (1388)
Q Consensus 903 ~~~Lkqq 909 (1388)
-++|+--
T Consensus 199 C~rLr~l 205 (769)
T PF05911_consen 199 CQRLRAL 205 (769)
T ss_pred HHHHHHH
Confidence 9999964
No 137
>KOG0994 consensus Extracellular matrix glycoprotein Laminin subunit beta [Extracellular structures]
Probab=94.02 E-value=29 Score=45.92 Aligned_cols=35 Identities=20% Similarity=0.249 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 873 KKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 873 ~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
+.++++|.+...-+..+++...++..|++++..+.
T Consensus 1710 ~~l~dLe~~y~~~~~~L~~~~aeL~~Le~r~~~vl 1744 (1758)
T KOG0994|consen 1710 DRLKDLELEYLRNEQALEDKAAELAGLEKRVESVL 1744 (1758)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHHHHH
Confidence 34444444444444455555555555555544433
No 138
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=93.96 E-value=7.5 Score=49.43 Aligned_cols=81 Identities=20% Similarity=0.311 Sum_probs=44.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
..++.+++.+..+++++++.+.......-..+..+......+..+....++++..+++++......+.++.+....|+.|
T Consensus 805 ~~~l~~~q~e~~~~keq~~t~~~~tsa~a~~le~m~~~~~~la~e~~~ieq~ls~l~~~~k~~~nli~~ltEk~~sl~~q 884 (970)
T KOG0946|consen 805 STRLQELQSELTQLKEQIQTLLERTSAAADSLESMGSTEKNLANELKLIEQKLSNLQEKIKFGNNLIKELTEKISSLEAQ 884 (970)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHhhccccchhhHHHHHHHHHHHHHHHhhhhhhHHHHHhhhhhhHHHh
Confidence 34444555555555555555555554444444444333333444555566666666666666666666666666666654
Q ss_pred H
Q 000617 910 A 910 (1388)
Q Consensus 910 ~ 910 (1388)
+
T Consensus 885 a 885 (970)
T KOG0946|consen 885 A 885 (970)
T ss_pred h
Confidence 4
No 139
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=93.92 E-value=3.5 Score=48.52 Aligned_cols=28 Identities=21% Similarity=0.354 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 882 VDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 882 i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+...+.+.+..++-+.+|.+++..++.-
T Consensus 362 Lrrfq~ekeatqELieelrkelehlr~~ 389 (502)
T KOG0982|consen 362 LRRFQEEKEATQELIEELRKELEHLRRR 389 (502)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 4445666666666777777777777754
No 140
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=93.89 E-value=13 Score=47.23 Aligned_cols=36 Identities=17% Similarity=0.147 Sum_probs=18.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGEL 871 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l 871 (1388)
.+.|..+++-++++...+++.++-+++..++++..+
T Consensus 492 ~d~e~~rik~ev~eal~~~k~~q~kLe~sekEN~iL 527 (861)
T PF15254_consen 492 FDIETTRIKIEVEEALVNVKSLQFKLEASEKENQIL 527 (861)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhHHHHHhhhhHh
Confidence 334445555555555555555555555555555533
No 141
>PF15619 Lebercilin: Ciliary protein causing Leber congenital amaurosis disease
Probab=93.84 E-value=12 Score=40.81 Aligned_cols=27 Identities=22% Similarity=0.240 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 841 ENLKGLLQSQTQTADEAKQAFTVSEAK 867 (1388)
Q Consensus 841 ~~Lk~ei~~l~~~~~ele~~~~~l~~~ 867 (1388)
.+|...++.++.++++.+..+..++..
T Consensus 121 eeL~~kL~~~~~~l~~~~~ki~~Lek~ 147 (194)
T PF15619_consen 121 EELQRKLSQLEQKLQEKEKKIQELEKQ 147 (194)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555555555555555554443
No 142
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=93.82 E-value=12 Score=46.76 Aligned_cols=46 Identities=22% Similarity=0.358 Sum_probs=37.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000617 867 KNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 912 (1388)
Q Consensus 867 ~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~~~ 912 (1388)
+.....+++..++.++..|..+++.....+..|+.+|+.|+.+...
T Consensus 581 e~~~k~kq~k~lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~~a 626 (786)
T PF05483_consen 581 EILKKEKQMKILENKCNNLRKQVENKNKNIEELQQENKALKKKITA 626 (786)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 3445556777888889999999998888999999999999988654
No 143
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=93.77 E-value=2.3 Score=55.35 Aligned_cols=30 Identities=10% Similarity=0.320 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 879 EKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 879 e~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
+.+.+..++.+.+.-++|.++-++.++++.
T Consensus 684 ~~Q~~~I~~iL~~~~~~I~~~v~~ik~i~~ 713 (717)
T PF10168_consen 684 ESQKRTIKEILKQQGEEIDELVKQIKNIKK 713 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445555666666666666666666666654
No 144
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=93.71 E-value=35 Score=45.81 Aligned_cols=71 Identities=20% Similarity=0.269 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEK--RVDELQDSVQRLAEKVSNLESENQVL 906 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~--~i~~Lq~el~~lee~i~~Le~E~~~L 906 (1388)
+......++.++..++..++....++.+++.........+.+.++ .-..++.+++.++..++.+.+|++.+
T Consensus 621 ~~e~~~~l~~~i~sL~~~~~~~~~~l~k~~el~r~~~e~~~~~ek~~~e~~~e~~lk~~q~~~eq~~~E~~~~ 693 (1317)
T KOG0612|consen 621 ISEIIAELKEEISSLEETLKAGKKELLKVEELKRENQERISDSEKEALEIKLERKLKMLQNELEQENAEHHRL 693 (1317)
T ss_pred HHHHHHHHHhHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333444455555555555555555555554443334444444443 33445555556666666666666666
No 145
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=93.69 E-value=4.7 Score=48.56 Aligned_cols=70 Identities=14% Similarity=0.147 Sum_probs=35.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 839 EVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 839 e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
++.+|..++.++.+++..+.-+..++..-.......-..++.+.+++++.-.+......+-++|++.|+.
T Consensus 234 e~skLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lrs 303 (596)
T KOG4360|consen 234 ENSKLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLRS 303 (596)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 3333444444444333333333333333333333333355566666666666666666677777777774
No 146
>PTZ00121 MAEBL; Provisional
Probab=93.66 E-value=39 Score=46.07 Aligned_cols=18 Identities=6% Similarity=0.231 Sum_probs=12.1
Q ss_pred CCeEEEecceeeeeeccC
Q 000617 401 TDFTILHYAGEVTYQANH 418 (1388)
Q Consensus 401 ~~F~I~H~ag~V~Y~~~~ 418 (1388)
..|+..-.+|..-|+..+
T Consensus 775 ~yfG~~GlGGRLGsn~s~ 792 (2084)
T PTZ00121 775 KYYGLYGFGGRLGANISI 792 (2084)
T ss_pred eeeeeeccCccccccccc
Confidence 467777777777776654
No 147
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=93.46 E-value=8 Score=49.93 Aligned_cols=61 Identities=15% Similarity=0.164 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 847 LQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 847 i~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.+.++-++..++.++.-+....+++..=-.-.|+++++.-+.++.-+++-..|.+|+....
T Consensus 123 fE~~Khei~rl~Ee~~~l~~qlee~~rLk~iae~qleEALesl~~EReqk~~LrkEL~~~~ 183 (717)
T PF09730_consen 123 FEGLKHEIKRLEEEIELLNSQLEEAARLKEIAEKQLEEALESLKSEREQKNALRKELDQHL 183 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444444444444444444443333334555665555555555566666666665533
No 148
>smart00787 Spc7 Spc7 kinetochore protein. This domain is found in cell division proteins which are required for kinetochore-spindle association.
Probab=93.43 E-value=7.2 Score=45.73 Aligned_cols=15 Identities=27% Similarity=0.527 Sum_probs=6.8
Q ss_pred HHHHHHHHHHHHHHH
Q 000617 887 DSVQRLAEKVSNLES 901 (1388)
Q Consensus 887 ~el~~lee~i~~Le~ 901 (1388)
.++..++.++..|++
T Consensus 271 ~Ei~~Lk~~~~~Le~ 285 (312)
T smart00787 271 KEIEKLKEQLKLLQS 285 (312)
T ss_pred HHHHHHHHHHHHHHH
Confidence 344444444444443
No 149
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=93.39 E-value=0.063 Score=54.18 Aligned_cols=29 Identities=34% Similarity=0.478 Sum_probs=21.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
++..+++|+|++|+|||..++.+++-+..
T Consensus 2 ~~~~~~~i~G~~G~GKT~~~~~~~~~~~~ 30 (131)
T PF13401_consen 2 QSQRILVISGPPGSGKTTLIKRLARQLNA 30 (131)
T ss_dssp -----EEEEE-TTSSHHHHHHHHHHHHHH
T ss_pred CCCcccEEEcCCCCCHHHHHHHHHHHhHH
Confidence 45689999999999999999999988764
No 150
>PF15066 CAGE1: Cancer-associated gene protein 1 family
Probab=93.38 E-value=20 Score=42.97 Aligned_cols=15 Identities=33% Similarity=0.445 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHH
Q 000617 256 DALAKTIYSRLFDWI 270 (1388)
Q Consensus 256 dalak~lY~~LF~wi 270 (1388)
-.|++.+|+-|=+|+
T Consensus 50 ~Tlsed~ysTldnll 64 (527)
T PF15066_consen 50 FTLSEDIYSTLDNLL 64 (527)
T ss_pred chhhHHHHhhhhhcc
Confidence 357777888776664
No 151
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=93.37 E-value=12 Score=48.78 Aligned_cols=60 Identities=22% Similarity=0.322 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 850 QTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 850 l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+...+.+.+.++.++-+.+..+.+++.++..+...+..+-..+...+..++.++.+-++.
T Consensus 437 l~~si~e~~~r~~~~~~~~~~~k~~~del~~~Rk~lWREE~~l~~~i~~~~~dl~~~~~~ 496 (1200)
T KOG0964|consen 437 LESSINETKGRMEEFDAENTELKRELDELQDKRKELWREEKKLRSLIANLEEDLSRAEKN 496 (1200)
T ss_pred HHhhHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333334444444444555555555555555555556666666665555543
No 152
>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]. There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding
Probab=93.33 E-value=11 Score=38.72 Aligned_cols=20 Identities=10% Similarity=0.305 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000617 780 EIAKLQEALHAMQLRVDDAN 799 (1388)
Q Consensus 780 E~~~L~~~le~l~~~l~~~~ 799 (1388)
+.+.++..+..++.+++..+
T Consensus 18 e~dsle~~v~~LEreLe~~q 37 (140)
T PF10473_consen 18 EKDSLEDHVESLERELEMSQ 37 (140)
T ss_pred hHhhHHHHHHHHHHHHHHHH
Confidence 33444444444444444443
No 153
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=93.28 E-value=0.067 Score=53.60 Aligned_cols=22 Identities=45% Similarity=0.549 Sum_probs=21.0
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|+|.+|||||+.++.+.+.+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 8999999999999999999996
No 154
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=93.18 E-value=13 Score=47.14 Aligned_cols=12 Identities=33% Similarity=0.407 Sum_probs=4.4
Q ss_pred HHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGL 846 (1388)
Q Consensus 835 ~L~~e~~~Lk~e 846 (1388)
.|..+..+++.+
T Consensus 341 ~L~~eL~~~r~e 352 (522)
T PF05701_consen 341 SLEAELNKTRSE 352 (522)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
No 155
>TIGR02680 conserved hypothetical protein TIGR02680. Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length.
Probab=93.05 E-value=38 Score=48.05 Aligned_cols=27 Identities=30% Similarity=0.591 Sum_probs=23.6
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
-..+|+|.+|||||++.-.++.||..-
T Consensus 25 g~~~~~G~NGsGKS~~lda~~~~ll~~ 51 (1353)
T TIGR02680 25 GRLLLRGNNGAGKSKVLELLLPFLLDG 51 (1353)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhcC
Confidence 357889999999999999999999764
No 156
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=92.92 E-value=0.085 Score=56.63 Aligned_cols=33 Identities=36% Similarity=0.573 Sum_probs=22.7
Q ss_pred ccCCCCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 2 INEGKSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 2 ~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
...+...+|+|.|++|+|||...+.++.++..-
T Consensus 19 ~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~ 51 (185)
T PF13191_consen 19 AQSGSPRNLLLTGESGSGKTSLLRALLDRLAER 51 (185)
T ss_dssp TSS-----EEE-B-TTSSHHHHHHHHHHHHHHH
T ss_pred HHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhc
Confidence 356678999999999999999999999888754
No 157
>PRK10884 SH3 domain-containing protein; Provisional
Probab=92.87 E-value=1.3 Score=48.58 Aligned_cols=77 Identities=13% Similarity=0.150 Sum_probs=49.1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
..++..++.++++++.+++++..+.. ....+++.......+.+.+++++..+|.++++.++.++..|+.++..++..
T Consensus 92 ~~rlp~le~el~~l~~~l~~~~~~~~---~~~~~l~~~~~~~~~~~~~L~~~n~~L~~~l~~~~~~~~~l~~~~~~~~~~ 168 (206)
T PRK10884 92 RTRVPDLENQVKTLTDKLNNIDNTWN---QRTAEMQQKVAQSDSVINGLKEENQKLKNQLIVAQKKVDAANLQLDDKQRT 168 (206)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666666666666554433 233334444445555666677777777778877888887788887777754
No 158
>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]
Probab=92.83 E-value=47 Score=44.72 Aligned_cols=35 Identities=11% Similarity=0.210 Sum_probs=18.4
Q ss_pred CeEEEecceeeeeeccCccccc-----chhhHHHHHHHHH
Q 000617 402 DFTILHYAGEVTYQANHFLDKN-----KDYVVAEHQALLT 436 (1388)
Q Consensus 402 ~F~I~H~ag~V~Y~~~~fl~kN-----~d~~~~~~~~ll~ 436 (1388)
+..+.-|+--+.-+.+|-+.-+ .|+++|+++.-..
T Consensus 213 HikLADFGsClkm~~dG~V~s~~aVGTPDYISPEvLqs~~ 252 (1317)
T KOG0612|consen 213 HIKLADFGSCLKMDADGTVRSSVAVGTPDYISPEVLQSQG 252 (1317)
T ss_pred cEeeccchhHHhcCCCCcEEeccccCCCCccCHHHHHhhc
Confidence 3444444333444455554443 3788888765543
No 159
>PF08614 ATG16: Autophagy protein 16 (ATG16); InterPro: IPR013923 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. This entry represents auotphagy protein 16 (Apg16), which is required for the function of the Apg12p-Apg5p conjugate.; PDB: 3A7O_D 3A7P_B.
Probab=92.79 E-value=1.3 Score=48.43 Aligned_cols=69 Identities=17% Similarity=0.282 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVS 897 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~ 897 (1388)
....+..|+.++..|+.++..++.++.+..+.++.++.+...+.-++..++.++..++.+..+|=+...
T Consensus 114 ~~~~l~~l~~~~~~L~~~~~~l~~~l~ek~k~~e~l~DE~~~L~l~~~~~e~k~~~l~~En~~Lv~Rwm 182 (194)
T PF08614_consen 114 KERRLAELEAELAQLEEKIKDLEEELKEKNKANEILQDELQALQLQLNMLEEKLRKLEEENRELVERWM 182 (194)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456666777777777777777777777777777777777666666666666666666666665555433
No 160
>KOG2991 consensus Splicing regulator [RNA processing and modification]
Probab=92.74 E-value=19 Score=39.82 Aligned_cols=73 Identities=12% Similarity=0.167 Sum_probs=45.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+.++.+|+.+++.-+..-++++...+++.+-+.+|.. .++..+..+--|++++++.+..|+.|++.+..+.+.
T Consensus 235 ~Gria~Le~eLAmQKs~seElkssq~eL~dfm~eLde-------dVEgmqsTiliLQq~Lketr~~Iq~l~k~~~q~sqa 307 (330)
T KOG2991|consen 235 EGRIAELEIELAMQKSQSEELKSSQEELYDFMEELDE-------DVEGMQSTILILQQKLKETRKEIQRLKKGLEQVSQA 307 (330)
T ss_pred cccHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHH-------HHhcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445555555555555445555544444444444444 444667777788888888888888888888877753
No 161
>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]
Probab=92.67 E-value=11 Score=48.03 Aligned_cols=80 Identities=18% Similarity=0.205 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELT------KKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 904 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~------~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~ 904 (1388)
+++..+..+.+++..+...+.+++.+-+.-++..++..+... .-....++++.++..++.+......+++.+..
T Consensus 737 eel~a~~~e~k~l~~~q~~l~~~L~k~~~~~es~k~~~~~a~~~~~~~~~~~~~qeqv~El~~~l~e~~~~l~~~q~e~~ 816 (970)
T KOG0946|consen 737 EELNAALSENKKLENDQELLTKELNKKNADIESFKATQRSAELSQGSLNDNLGDQEQVIELLKNLSEESTRLQELQSELT 816 (970)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhhcccchhhhhhhhHHHHHHHHHhhhhhhhHHHHHHHHHH
Confidence 344455555555555554455544433333333332222111 11122344444454456666667777777777
Q ss_pred HHHHHH
Q 000617 905 VLRQQA 910 (1388)
Q Consensus 905 ~Lkqq~ 910 (1388)
.++++.
T Consensus 817 ~~keq~ 822 (970)
T KOG0946|consen 817 QLKEQI 822 (970)
T ss_pred HHHHHH
Confidence 777653
No 162
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=92.65 E-value=11 Score=47.50 Aligned_cols=13 Identities=15% Similarity=-0.025 Sum_probs=5.6
Q ss_pred HHHHHHHHHHHHH
Q 000617 691 KAAIIAQAQWRCH 703 (1388)
Q Consensus 691 ~aAi~IQ~~~R~~ 703 (1388)
.|+.+.......|
T Consensus 135 ~Aa~i~n~l~~~y 147 (498)
T TIGR03007 135 LAKDVVQTLLTIF 147 (498)
T ss_pred HHHHHHHHHHHHH
Confidence 3444444444444
No 163
>KOG0249 consensus LAR-interacting protein and related proteins [General function prediction only]
Probab=92.54 E-value=6.4 Score=49.21 Aligned_cols=23 Identities=22% Similarity=0.459 Sum_probs=16.1
Q ss_pred CCCCCcchhhHHhhchhHHHHHHhhcCc-ccc
Q 000617 1227 RECCSFSNGEFVKAGLAELEQWCHDSTE-EFA 1257 (1388)
Q Consensus 1227 ~~~cs~s~G~qIr~nls~LE~W~~~~~~-~~~ 1257 (1388)
+|..-||+ .++-.|+.+.|+ +|+
T Consensus 756 ~DvlVWsN--------~RvirWV~~igL~eya 779 (916)
T KOG0249|consen 756 TDVLVWSN--------DRVIRWVQSIGLGEYA 779 (916)
T ss_pred ccceEeec--------HHHHHHHHhcCHHHHh
Confidence 56677888 456679999885 344
No 164
>PF07111 HCR: Alpha helical coiled-coil rod protein (HCR); InterPro: IPR009800 This family consists of several mammalian alpha helical coiled-coil rod HCR proteins. The function of HCR is unknown but it has been implicated in psoriasis in humans and is thought to affect keratinocyte proliferation [].; GO: 0030154 cell differentiation, 0005634 nucleus, 0005737 cytoplasm
Probab=92.52 E-value=21 Score=45.21 Aligned_cols=19 Identities=26% Similarity=0.503 Sum_probs=9.1
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 000617 890 QRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 890 ~~lee~i~~Le~E~~~Lkq 908 (1388)
+++.+.+..|+++...|..
T Consensus 245 ~~L~~tVq~L~edR~~L~~ 263 (739)
T PF07111_consen 245 EELLETVQHLQEDRDALQA 263 (739)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3444445555555554443
No 165
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=92.47 E-value=18 Score=47.48 Aligned_cols=21 Identities=24% Similarity=0.156 Sum_probs=12.8
Q ss_pred ccccchhhhhccHHHHHHhhh
Q 000617 965 PQKTLNEKQQENQDLLIKCIS 985 (1388)
Q Consensus 965 ~~~~~~~~~~e~~~~l~~~l~ 985 (1388)
..+.+.-..++|.+++.+.++
T Consensus 477 ~~~~Fi~~~~eD~~lf~~~i~ 497 (1072)
T KOG0979|consen 477 DLKAFICCDSEDYLLFVKKIK 497 (1072)
T ss_pred ccceeeeechHHHHHHHHHhh
Confidence 445555556677777666554
No 166
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=92.43 E-value=0.12 Score=46.25 Aligned_cols=22 Identities=41% Similarity=0.647 Sum_probs=21.1
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|.++|.+|||||+.++.+.+.|
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l 23 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQL 23 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7899999999999999999998
No 167
>KOG4360 consensus Uncharacterized coiled coil protein [Function unknown]
Probab=92.31 E-value=11 Score=45.54 Aligned_cols=66 Identities=15% Similarity=0.261 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 900 (1388)
Q Consensus 835 ~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le 900 (1388)
.|.+++..++.++..+.-+.+++..-++.....-+.+..+++++|.+..+....+.+.++++.+|.
T Consensus 237 kLlsql~d~qkk~k~~~~Ekeel~~~Lq~~~da~~ql~aE~~EleDkyAE~m~~~~EaeeELk~lr 302 (596)
T KOG4360|consen 237 KLLSQLVDLQKKIKYLRHEKEELDEHLQAYKDAQRQLTAELEELEDKYAECMQMLHEAEEELKCLR 302 (596)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334444444444444444444444444444444444444445555555555555555555555553
No 168
>PRK05480 uridine/cytidine kinase; Provisional
Probab=92.29 E-value=0.14 Score=56.69 Aligned_cols=27 Identities=33% Similarity=0.421 Sum_probs=24.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.--|.|+|.||||||+.++.|.+.|
T Consensus 4 ~~~~iI~I~G~sGsGKTTl~~~l~~~l 30 (209)
T PRK05480 4 KKPIIIGIAGGSGSGKTTVASTIYEEL 30 (209)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 456789999999999999999999887
No 169
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.26 E-value=44 Score=42.97 Aligned_cols=32 Identities=28% Similarity=0.339 Sum_probs=16.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.+++....+.+.+.++++....|..|...+++
T Consensus 307 ~vek~~~~l~~~l~~~~e~~~~l~~Ei~~l~~ 338 (569)
T PRK04778 307 YVEKNSDTLPDFLEHAKEQNKELKEEIDRVKQ 338 (569)
T ss_pred HHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444444555555555555555555555544
No 170
>PRK04778 septation ring formation regulator EzrA; Provisional
Probab=92.15 E-value=45 Score=42.87 Aligned_cols=13 Identities=8% Similarity=0.102 Sum_probs=8.0
Q ss_pred eccceeeecchhh
Q 000617 570 IGKTKVFLRAGQM 582 (1388)
Q Consensus 570 iGktkVFlr~~~~ 582 (1388)
.|.|...|..+.-
T Consensus 59 ~Ges~~~f~~w~~ 71 (569)
T PRK04778 59 TGQSEEKFEEWRQ 71 (569)
T ss_pred CcccHHHHHHHHH
Confidence 6667766665543
No 171
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=92.15 E-value=0.87 Score=53.47 Aligned_cols=13 Identities=31% Similarity=0.542 Sum_probs=6.6
Q ss_pred hHHHHHHHHHHHH
Q 000617 1179 HWQSIVKSLNNYL 1191 (1388)
Q Consensus 1179 ~~~~il~~L~~~~ 1191 (1388)
.|..-+++|=.-+
T Consensus 289 ~WT~AlK~lLtnl 301 (314)
T PF04111_consen 289 EWTKALKYLLTNL 301 (314)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 5665555544433
No 172
>PRK00300 gmk guanylate kinase; Provisional
Probab=92.10 E-value=0.12 Score=56.92 Aligned_cols=26 Identities=38% Similarity=0.500 Sum_probs=23.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.+.|+|.|.||||||+.++.+.+.+
T Consensus 4 ~g~~i~i~G~sGsGKstl~~~l~~~~ 29 (205)
T PRK00300 4 RGLLIVLSGPSGAGKSTLVKALLERD 29 (205)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999999999999999875
No 173
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=92.09 E-value=33 Score=41.16 Aligned_cols=36 Identities=14% Similarity=0.329 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 912 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~~~ 912 (1388)
...+.+.+....+.+++..|.++..|-+.|+++..+
T Consensus 386 ~ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns 421 (521)
T KOG1937|consen 386 VYTQRIKEIDGNIRKQEQDIVKILEETRELQKQENS 421 (521)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456667777777777777888888888877776533
No 174
>PRK05541 adenylylsulfate kinase; Provisional
Probab=92.06 E-value=0.16 Score=54.49 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=28.6
Q ss_pred CccCCCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 1 MINEGKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 1 m~~~~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|-...+...|++.|.||||||+.++.+.+.|..
T Consensus 1 ~~~~~~~~~I~i~G~~GsGKst~a~~l~~~l~~ 33 (176)
T PRK05541 1 MQMKPNGYVIWITGLAGSGKTTIAKALYERLKL 33 (176)
T ss_pred CCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHH
Confidence 555667789999999999999999999999864
No 175
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=92.04 E-value=28 Score=40.26 Aligned_cols=14 Identities=21% Similarity=0.427 Sum_probs=8.3
Q ss_pred HHHHHHHHHHHHHH
Q 000617 896 VSNLESENQVLRQQ 909 (1388)
Q Consensus 896 i~~Le~E~~~Lkqq 909 (1388)
-..+..||.+|+..
T Consensus 263 ek~ireEN~rLqr~ 276 (310)
T PF09755_consen 263 EKEIREENRRLQRK 276 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 34566666666653
No 176
>TIGR02322 phosphon_PhnN phosphonate metabolism protein/1,5-bisphosphokinase (PRPP-forming) PhnN. Members of this family resemble PhnN of phosphonate utilization operons, where different such operons confer the ability to use somewhat different profiles of C-P bond-containing compounds (see PubMed:15231805), including phosphites as well as phosphonates. PhnN in E. coli shows considerable homology to guanylate kinases (EC 2.7.4.8), and has actually been shown to act as a ribose 1,5-bisphosphokinase (PRPP forming). This suggests an analogous kinase reaction for phosphonate metabolism, converting 5-phosphoalpha-1-(methylphosphono)ribose to methylphosphono-PRPP.
Probab=92.00 E-value=0.12 Score=55.46 Aligned_cols=25 Identities=40% Similarity=0.407 Sum_probs=21.9
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
+.|+|.|.||||||+.++.+...+-
T Consensus 2 ~~~~i~G~sGsGKttl~~~l~~~~~ 26 (179)
T TIGR02322 2 RLIYVVGPSGAGKDTLLDYARARLA 26 (179)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 5789999999999999999877753
No 177
>COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=91.89 E-value=0.11 Score=59.78 Aligned_cols=28 Identities=36% Similarity=0.522 Sum_probs=25.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
++.+.+=|-||||||||++++.||+.|-
T Consensus 29 ~~GE~lgiVGESGsGKS~~~~aim~llp 56 (316)
T COG0444 29 KKGEILGIVGESGSGKSVLAKAIMGLLP 56 (316)
T ss_pred cCCcEEEEEcCCCCCHHHHHHHHHhccC
Confidence 3567888999999999999999999985
No 178
>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]
Probab=91.82 E-value=54 Score=43.09 Aligned_cols=22 Identities=23% Similarity=0.382 Sum_probs=14.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 747 EAKNKLEKRVEELTWRLQIEKR 768 (1388)
Q Consensus 747 ~~~~~Le~kv~~l~~~l~~e~~ 768 (1388)
+.+.+|+-++.+++.+++-.+.
T Consensus 300 k~kt~lel~~kdlq~~i~~n~q 321 (1200)
T KOG0964|consen 300 KKKTKLELKIKDLQDQITGNEQ 321 (1200)
T ss_pred HHhhhhhhhhHHHHHHhhhhhh
Confidence 3456677777777777764443
No 179
>KOG1937 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.75 E-value=28 Score=41.67 Aligned_cols=39 Identities=10% Similarity=0.343 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 871 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 871 l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+.+++.+.-..++...+++.+.-+...+|+++...+..+
T Consensus 387 ytqrikEi~gniRKq~~DI~Kil~etreLqkq~ns~se~ 425 (521)
T KOG1937|consen 387 YTQRIKEIDGNIRKQEQDIVKILEETRELQKQENSESEA 425 (521)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666777777777777777777777776665543
No 180
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=91.72 E-value=29 Score=39.78 Aligned_cols=51 Identities=27% Similarity=0.335 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 851 TQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 851 ~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
++.+++++.+.+-++.+. ...++.-+.+.++++.+++-+..|+...+.++-
T Consensus 244 ek~i~EfdiEre~LRAel-------~ree~r~K~lKeEmeSLkeiVkdlEA~hQh~~p 294 (561)
T KOG1103|consen 244 EKLIEEFDIEREFLRAEL-------EREEKRQKMLKEEMESLKEIVKDLEADHQHLRP 294 (561)
T ss_pred HHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhcCc
Confidence 344444444444444443 356666677788888888888888888777663
No 181
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=91.69 E-value=8 Score=43.15 Aligned_cols=69 Identities=14% Similarity=0.135 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 842 NLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 910 (1388)
Q Consensus 842 ~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~ 910 (1388)
.|+.+...+.+..+.+++..+++.-++.--+..+.-+|.++......++.++.++..+..|+.+.++.+
T Consensus 64 ~LkREnq~l~e~c~~lek~rqKlshdlq~Ke~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~ 132 (307)
T PF10481_consen 64 ALKRENQSLMESCENLEKTRQKLSHDLQVKESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAA 132 (307)
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhhHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 334444444444555555555555554444444455555555555566666666666666666555443
No 182
>COG0194 Gmk Guanylate kinase [Nucleotide transport and metabolism]
Probab=91.64 E-value=0.13 Score=54.62 Aligned_cols=25 Identities=36% Similarity=0.440 Sum_probs=22.4
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-.=|||||.||+|||+.+|.++.-.
T Consensus 4 G~l~vlsgPSG~GKsTl~k~L~~~~ 28 (191)
T COG0194 4 GLLIVLSGPSGVGKSTLVKALLEDD 28 (191)
T ss_pred ceEEEEECCCCCCHHHHHHHHHhhc
Confidence 4568999999999999999999776
No 183
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=91.64 E-value=30 Score=39.78 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 834 NSLTAEVENLKGLLQSQTQTADEA 857 (1388)
Q Consensus 834 ~~L~~e~~~Lk~ei~~l~~~~~el 857 (1388)
.+|.++...++....++..++.++
T Consensus 161 ~el~aei~~lk~~~~e~~eki~~l 184 (294)
T COG1340 161 KELKAEIDELKKKAREIHEKIQEL 184 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333344444443333333333333
No 184
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=91.60 E-value=0.16 Score=51.61 Aligned_cols=26 Identities=35% Similarity=0.501 Sum_probs=23.5
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+..|+++|+.|||||+.+|.+++.|
T Consensus 21 ~~~~i~l~G~lGaGKTtl~~~l~~~l 46 (133)
T TIGR00150 21 FGTVVLLKGDLGAGKTTLVQGLLQGL 46 (133)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 45689999999999999999999987
No 185
>TIGR01843 type_I_hlyD type I secretion membrane fusion protein, HlyD family. Type I secretion is an ABC transport process that exports proteins, without cleavage of any signal sequence, from the cytosol to extracellular medium across both inner and outer membranes. The secretion signal is found in the C-terminus of the transported protein. This model represents the adaptor protein between the ATP-binding cassette (ABC) protein of the inner membrane and the outer membrane protein, and is called the membrane fusion protein. This model selects a subfamily closely related to HlyD; it is defined narrowly and excludes, for example, colicin V secretion protein CvaA and multidrug efflux proteins.
Probab=91.59 E-value=13 Score=45.52 Aligned_cols=27 Identities=15% Similarity=0.252 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESEN 903 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~ 903 (1388)
+.+.++..++.++..++.++..++...
T Consensus 243 ~~~~~l~~~~~~l~~~~~~l~~~~~~l 269 (423)
T TIGR01843 243 EVLEELTEAQARLAELRERLNKARDRL 269 (423)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334445555555555555555555443
No 186
>PF09755 DUF2046: Uncharacterized conserved protein H4 (DUF2046); InterPro: IPR019152 This is the conserved N-terminal 350 residues of a family of proteins of unknown function possibly containing a coiled-coil domain.
Probab=91.58 E-value=31 Score=39.88 Aligned_cols=14 Identities=36% Similarity=0.477 Sum_probs=5.8
Q ss_pred HHHHHHHHHHHHHH
Q 000617 895 KVSNLESENQVLRQ 908 (1388)
Q Consensus 895 ~i~~Le~E~~~Lkq 908 (1388)
.|..|..|..+|++
T Consensus 230 hI~~Lr~EV~RLR~ 243 (310)
T PF09755_consen 230 HIRSLRQEVSRLRQ 243 (310)
T ss_pred HHHHHHHHHHHHHH
Confidence 33344444444443
No 187
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=91.41 E-value=23 Score=37.97 Aligned_cols=11 Identities=27% Similarity=0.419 Sum_probs=4.0
Q ss_pred HHHHHHHHHHH
Q 000617 884 ELQDSVQRLAE 894 (1388)
Q Consensus 884 ~Lq~el~~lee 894 (1388)
.|+.+.+++++
T Consensus 169 kLeke~DdlE~ 179 (205)
T KOG1003|consen 169 KLEKERDDLEE 179 (205)
T ss_pred HHcccHHHHHH
Confidence 33333333333
No 188
>cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis. It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural
Probab=91.33 E-value=0.17 Score=49.28 Aligned_cols=24 Identities=38% Similarity=0.553 Sum_probs=21.2
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.+.|+||||||+.++.++
T Consensus 13 ~~ge~v~I~GpSGsGKSTLl~~l~ 36 (107)
T cd00820 13 YGKVGVLITGDSGIGKTELALELI 36 (107)
T ss_pred cCCEEEEEEcCCCCCHHHHHHHhh
Confidence 345789999999999999999986
No 189
>PF10174 Cast: RIM-binding protein of the cytomatrix active zone; InterPro: IPR019323 This entry represents a family of proteins that form part of the CAZ (cytomatrix at the active zone) complex which is involved in determining the site of synaptic vesicle fusion []. Located at the C terminus is a PDZ-binding motif that binds directly to RIM (a small G protein Rab-3A effector). These proteins also contain four coiled-coil domains [].
Probab=91.30 E-value=61 Score=42.73 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.+++.++.++..++..++.|..++.+....+..++.....+..........++.+.-.++...+++.+|+.+...++
T Consensus 465 Eele~~~~e~~~lk~~~~~LQ~eLsEk~~~l~~~kee~s~l~s~~~K~~s~i~~l~I~lEk~rek~~kl~~ql~k~~ 541 (775)
T PF10174_consen 465 EELETYQKELKELKAKLESLQKELSEKELQLEDAKEEASKLASSQEKKDSEIERLEIELEKKREKHEKLEKQLEKLR 541 (775)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhHHHHHhhccchhhhHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 44556666677777777777777777776666666666655555555566677777777777777777777776644
No 190
>PF15397 DUF4618: Domain of unknown function (DUF4618)
Probab=91.25 E-value=31 Score=39.14 Aligned_cols=36 Identities=22% Similarity=0.416 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000617 876 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 911 (1388)
Q Consensus 876 ~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~~ 911 (1388)
..+.+++....+.++++++.|..|..|.+.|..++.
T Consensus 189 ~~m~kei~~~re~i~el~e~I~~L~~eV~~L~~~~~ 224 (258)
T PF15397_consen 189 QVMQKEIVQFREEIDELEEEIPQLRAEVEQLQAQAQ 224 (258)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 456777888888888888889999999888887664
No 191
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=91.21 E-value=7.6 Score=45.28 Aligned_cols=77 Identities=16% Similarity=0.353 Sum_probs=33.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.++..++.+++.++.+++..++.+.++...+...+..........+.......++..++...+..+..++.....-+
T Consensus 70 ~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~l~~~r 146 (302)
T PF10186_consen 70 ERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQSQLARRR 146 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444444333333322222233334444444555555555544444444333
No 192
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=91.21 E-value=0.16 Score=55.71 Aligned_cols=25 Identities=32% Similarity=0.663 Sum_probs=22.6
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.|+|+|.+|||||++.+.+++++..
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~~ 27 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYINK 27 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhhh
Confidence 5899999999999999999998853
No 193
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=91.17 E-value=0.16 Score=51.09 Aligned_cols=23 Identities=43% Similarity=0.781 Sum_probs=21.7
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
|++.|++|+|||+.++.+.+++-
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~ 23 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLG 23 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTT
T ss_pred CEEECcCCCCeeHHHHHHHhhcc
Confidence 79999999999999999999984
No 194
>KOG0979 consensus Structural maintenance of chromosome protein SMC5/Spr18, SMC superfamily [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=91.00 E-value=29 Score=45.71 Aligned_cols=30 Identities=17% Similarity=0.306 Sum_probs=12.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 874 KLKDAEKRVDELQDSVQRLAEKVSNLESEN 903 (1388)
Q Consensus 874 ~l~~le~~i~~Lq~el~~lee~i~~Le~E~ 903 (1388)
++..+..+-...+..+....+.+..++.++
T Consensus 326 ~le~lk~~~~~rq~~i~~~~k~i~~~q~el 355 (1072)
T KOG0979|consen 326 KLESLKKAAEKRQKRIEKAKKMILDAQAEL 355 (1072)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 333344444444444444444444444443
No 195
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=90.96 E-value=74 Score=43.47 Aligned_cols=39 Identities=15% Similarity=0.117 Sum_probs=21.7
Q ss_pred HHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHH
Q 000617 1182 SIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLF 1220 (1388)
Q Consensus 1182 ~il~~L~~~~~~l~~~~V~~~l~~Q~f~Qlf~~ina~lf 1220 (1388)
..+..+..+-..+...+++..+...+..++....|..+.
T Consensus 740 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~ 778 (908)
T COG0419 740 KALELLEELREKLGKAGLRADILRNLLAQIEAEANEILS 778 (908)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455666666666666665555555555555555544433
No 196
>PF07926 TPR_MLP1_2: TPR/MLP1/MLP2-like protein; InterPro: IPR012929 This domain is found in a number of proteins, including TPR protein (P12270 from SWISSPROT) and yeast myosin-like proteins 1 (MLP1, Q02455 from SWISSPROT) and 2 (MLP2, P40457 from SWISSPROT). These proteins share a number of features; for example, they all have coiled-coil regions and all three are associated with nuclear pores [, , ]. TPR is thought to be a component of nuclear pore complex- attached intranuclear filaments [], and is implicated in nuclear protein import []. Moreover, its N-terminal region is involved in the activation of oncogenic kinases, possibly by mediating the dimerisation of kinase domains or by targeting these kinases to the nuclear pore complex []. MLP1 and MLP2 are involved in the process of telomere length regulation, where they are thought to interact with proteins such as Tel1p and modulate their activity []. ; GO: 0006606 protein import into nucleus, 0005643 nuclear pore
Probab=90.96 E-value=17 Score=37.09 Aligned_cols=61 Identities=23% Similarity=0.444 Sum_probs=24.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 896 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i 896 (1388)
+..++.++..++.+.+..+..+...+.. .......+..++.+++.++.+|..+..-|-.++
T Consensus 68 ~~~~~~~~~~l~~~~~~a~~~l~~~e~s---w~~qk~~le~e~~~~~~r~~dL~~QN~lLh~Ql 128 (132)
T PF07926_consen 68 LQELQQEINELKAEAESAKAELEESEAS---WEEQKEQLEKELSELEQRIEDLNEQNKLLHDQL 128 (132)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444433332 222222333334444444444444444443333
No 197
>PF04111 APG6: Autophagy protein Apg6; InterPro: IPR007243 Macroautophagy is a bulk degradation process induced by starvation in eukaryotic cells. In yeast, 15 Apg proteins coordinate the formation of autophagosomes. No molecule involved in autophagy has yet been identified in higher eukaryotes []. The pre-autophagosomal structure contains at least five Apg proteins: Apg1p, Apg2p, Apg5p, Aut7p/Apg8p and Apg16p. It is found in the vacuole []. The C-terminal glycine of Apg12p is conjugated to a lysine residue of Apg5p via an isopeptide bond. During autophagy, cytoplasmic components are enclosed in autophagosomes and delivered to lysosomes/vacuoles. Auotphagy protein 16 (Apg16) has been shown to be bind to Apg5 and is required for the function of the Apg12p-Apg5p conjugate []. Autophagy protein 5 (Apg5) is directly required for the import of aminopeptidase I via the cytoplasm-to-vacuole targeting pathway []. Apg6/Vps30p has two distinct functions in the autophagic process, either associated with the membrane or in a retrieval step of the carboxypeptidase Y sorting pathway [].; GO: 0006914 autophagy; PDB: 3Q8T_A 3VP7_A 4DDP_A.
Probab=90.95 E-value=2.8 Score=49.30 Aligned_cols=70 Identities=17% Similarity=0.236 Sum_probs=25.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 838 AEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 838 ~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.+..+++.+..++.+++.+++.+..++.++..+++.+...++.+-.....+...+.-+...++++...++
T Consensus 50 ~el~~le~Ee~~l~~eL~~LE~e~~~l~~el~~le~e~~~l~~eE~~~~~~~n~~~~~l~~~~~e~~sl~ 119 (314)
T PF04111_consen 50 EELEKLEQEEEELLQELEELEKEREELDQELEELEEELEELDEEEEEYWREYNELQLELIEFQEERDSLK 119 (314)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333333333333333333333333333333334433333
No 198
>PF06785 UPF0242: Uncharacterised protein family (UPF0242); InterPro: IPR009623 This is a group of proteins of unknown function.
Probab=90.93 E-value=25 Score=40.35 Aligned_cols=18 Identities=11% Similarity=0.080 Sum_probs=12.6
Q ss_pred CCccchHHHHHHHHhccc
Q 000617 992 GGKPVAACLIYKCLLHWR 1009 (1388)
Q Consensus 992 ~~kp~pA~il~~c~~~~~ 1009 (1388)
..+.+-|+-+|..+.-|.
T Consensus 307 ~qRllFAN~~fk~wtGy~ 324 (401)
T PF06785_consen 307 SQRLLFANSQFKTWTGYS 324 (401)
T ss_pred hhHHHHhHHHHHHHhccC
Confidence 345667888887777776
No 199
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=90.87 E-value=26 Score=41.27 Aligned_cols=11 Identities=27% Similarity=0.135 Sum_probs=7.2
Q ss_pred HHHHHHHHHHH
Q 000617 691 KAAIIAQAQWR 701 (1388)
Q Consensus 691 ~aAi~IQ~~~R 701 (1388)
.|.+.||+.+-
T Consensus 85 ~Asv~IQarae 95 (552)
T KOG2129|consen 85 LASVEIQARAE 95 (552)
T ss_pred hhhhHHhhccc
Confidence 57777886544
No 200
>PRK11281 hypothetical protein; Provisional
Probab=90.83 E-value=11 Score=51.37 Aligned_cols=6 Identities=17% Similarity=0.174 Sum_probs=2.1
Q ss_pred HHHHHH
Q 000617 901 SENQVL 906 (1388)
Q Consensus 901 ~E~~~L 906 (1388)
.+...+
T Consensus 299 ~~~~~l 304 (1113)
T PRK11281 299 EKLNTL 304 (1113)
T ss_pred HHHHHH
Confidence 333333
No 201
>TIGR00235 udk uridine kinase. Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below
Probab=90.81 E-value=0.23 Score=54.78 Aligned_cols=28 Identities=32% Similarity=0.431 Sum_probs=23.7
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.+...|.|+|.||||||+.++.+...+.
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~ 31 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLG 31 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3557888999999999999999887763
No 202
>PRK10698 phage shock protein PspA; Provisional
Probab=90.79 E-value=29 Score=38.74 Aligned_cols=76 Identities=18% Similarity=0.278 Sum_probs=44.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRV-----------DELQDSVQRLAEKVSN 898 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i-----------~~Lq~el~~lee~i~~ 898 (1388)
...+..|+.+....+..++.|+..+..++.++.+++.....+..+....+.+. ...-...++++++|..
T Consensus 98 ~~~~~~l~~~~~~~~~~~~~L~~~l~~L~~ki~eak~k~~~L~aR~~~A~a~~~~~~~~~~~~~~~a~~~f~rmE~ki~~ 177 (222)
T PRK10698 98 TDLIATLEHEVTLVDETLARMKKEIGELENKLSETRARQQALMLRHQAASSSRDVRRQLDSGKLDEAMARFESFERRIDQ 177 (222)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHH
Confidence 45556666777777777777777777777777776666665555444433321 1122355556666666
Q ss_pred HHHHHHH
Q 000617 899 LESENQV 905 (1388)
Q Consensus 899 Le~E~~~ 905 (1388)
++.+-..
T Consensus 178 ~Ea~aea 184 (222)
T PRK10698 178 MEAEAES 184 (222)
T ss_pred HHHHHhH
Confidence 6665443
No 203
>PF10481 CENP-F_N: Cenp-F N-terminal domain; InterPro: IPR018463 Mitosin or centromere-associated protein-F (Cenp-F) is found bound across the centromere as one of the proteins of the outer layer of the kinetochore []. Most of the kinetochore/centromere functions appear to depend upon binding of the C-terminal part of the molecule, whereas the N-terminal part, here, may be a cytoplasmic player in controlling the function of microtubules and dynein [].
Probab=90.77 E-value=23 Score=39.66 Aligned_cols=80 Identities=19% Similarity=0.263 Sum_probs=43.4
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------------HHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL------------------KDAEKRVDELQDSVQR 891 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l------------------~~le~~i~~Lq~el~~ 891 (1388)
+..+.-|+..+...+..++.|+.++...+.+++..+.........+ .-...+.++|++....
T Consensus 94 e~qv~~lEgQl~s~Kkqie~Leqelkr~KsELErsQ~~~~~~~~sl~~~stpqk~f~~p~tp~q~~~~sk~e~L~ekynk 173 (307)
T PF10481_consen 94 ESQVNFLEGQLNSCKKQIEKLEQELKRCKSELERSQQAASSGDVSLNPCSTPQKSFATPLTPSQYYSDSKYEELQEKYNK 173 (307)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCccccccCCchhhccCCCChhhhhhhhhHHHHHHHHHH
Confidence 4455566666666666666666666666555555444332111100 0123445555555555
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000617 892 LAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 892 lee~i~~Le~E~~~Lkqq 909 (1388)
--++-.+|+.|.+.|+-+
T Consensus 174 eveerkrle~e~k~lq~k 191 (307)
T PF10481_consen 174 EVEERKRLEAEVKALQAK 191 (307)
T ss_pred HHHHHhhHHHHHHHHhcc
Confidence 555666788888887743
No 204
>PF09304 Cortex-I_coil: Cortexillin I, coiled coil; InterPro: IPR015383 This domain is predominantly found in the actin-bundling protein cortexillin I from Dictyostelium discoideum (Slime mold). The domain has a structure consisting of an 18-heptad-repeat alpha-helical coiled-coil, and is a prerequisite for the assembly of Cortexillin I []. ; PDB: 1D7M_A.
Probab=90.77 E-value=7.8 Score=37.34 Aligned_cols=62 Identities=16% Similarity=0.325 Sum_probs=38.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQR 891 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~ 891 (1388)
...+..|+.+++..+...++|-++.++++..+..++.......+++.+++.++.++...++.
T Consensus 15 ~n~La~Le~slE~~K~S~~eL~kqkd~L~~~l~~L~~q~~s~~qr~~eLqaki~ea~~~le~ 76 (107)
T PF09304_consen 15 QNRLASLERSLEDEKTSQGELAKQKDQLRNALQSLQAQNASRNQRIAELQAKIDEARRNLED 76 (107)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555566666666666666666666666666666666666666666666666666655
No 205
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=90.70 E-value=2.7 Score=51.82 Aligned_cols=79 Identities=16% Similarity=0.315 Sum_probs=51.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG---ELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 906 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~---~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~L 906 (1388)
+..++.|+.++..|+..+++++.+++.++.++..+..+.. ....+++.++.++..|+.++.+....+..|+.++..+
T Consensus 428 ~~~ve~l~~e~~~L~~~~ee~k~eie~L~~~l~~~~r~~~~~~~~~rei~~~~~~I~~L~~~L~e~~~~ve~L~~~l~~l 507 (652)
T COG2433 428 EETVERLEEENSELKRELEELKREIEKLESELERFRREVRDKVRKDREIRARDRRIERLEKELEEKKKRVEELERKLAEL 507 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344455555555555555555555555555555444432 1223566778888888888888888888888888888
Q ss_pred HH
Q 000617 907 RQ 908 (1388)
Q Consensus 907 kq 908 (1388)
++
T Consensus 508 ~k 509 (652)
T COG2433 508 RK 509 (652)
T ss_pred HH
Confidence 75
No 206
>cd01918 HprK_C HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of Ser-46 of HPr and its dephosphorylation by phosphorolysis. The latter reaction uses inorganic phosphate as substrate and produces pyrophosphate. Phosphoenolpyruvate carboxykinase (PEPCK) and the C-terminal catalytic domain of HprK/P are structurally similar with conserved active site residues suggesting these two phosphotransferases have related functions. The HprK/P N-terminal domain is structurally similar to the N-terminal domains of the MurE and MurF amino acid ligases.
Probab=90.66 E-value=0.22 Score=51.65 Aligned_cols=24 Identities=33% Similarity=0.574 Sum_probs=21.3
Q ss_pred CeEEEEecCcCCchHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
+..|++.|+||||||+.+..+++.
T Consensus 14 g~gvLi~G~sG~GKStlal~L~~~ 37 (149)
T cd01918 14 GIGVLITGPSGIGKSELALELIKR 37 (149)
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHc
Confidence 578999999999999999877764
No 207
>PF00485 PRK: Phosphoribulokinase / Uridine kinase family; InterPro: IPR006083 Phosphoribulokinase (PRK) 2.7.1.19 from EC catalyses the ATP-dependent phosphorylation of ribulose-5-phosphate to ribulose-1,5-phosphate, a key step in the pentose phosphate pathway where carbon dioxide is assimilated by autotrophic organisms []. In general, plant enzymes are light-activated by the thioredoxin/ferredoxin system, while those from photosynthetic bacteria are regulated by a system that has an absolute requirement for NADH. Thioredoxin/ferredoxin regulation is mediated by the reversible oxidation/reduction of sulphydryl and disulphide groups. Uridine kinase (pyrimidine ribonucleoside kinase) is the rate-limiting enzyme in the pyrimidine salvage pathway. It catalyzes the following reaction: ATP + Uridine = ADP + UMP Pantothenate kinase (2.7.1.33 from EC) catalyzes the rate-limiting step in the biosynthesis of coenzyme A, the conversion of pantothenate to D-4'-phosphopantothenate in the presence of ATP. ; GO: 0005524 ATP binding, 0016301 kinase activity, 0008152 metabolic process; PDB: 2ZSE_A 2ZS7_A 3AF0_A 3AVP_A 2ZS9_A 2ZS8_A 3AEZ_A 2ZSB_A 2ZSD_A 2GEV_A ....
Probab=90.65 E-value=0.19 Score=54.79 Aligned_cols=26 Identities=42% Similarity=0.551 Sum_probs=23.2
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
|-|+|.||||||+.|+.+...|-..+
T Consensus 2 IgI~G~sgSGKTTla~~L~~~L~~~~ 27 (194)
T PF00485_consen 2 IGIAGPSGSGKTTLAKRLAQILNKRG 27 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTTCT
T ss_pred EEEECCCCCCHHHHHHHHHHHhCccC
Confidence 67999999999999999999997543
No 208
>cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine.
Probab=90.51 E-value=0.2 Score=54.80 Aligned_cols=22 Identities=36% Similarity=0.599 Sum_probs=20.5
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|.|+|.||||||+.++.+...|
T Consensus 2 igi~G~~GsGKSTl~~~l~~~l 23 (198)
T cd02023 2 IGIAGGSGSGKTTVAEEIIEQL 23 (198)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6799999999999999998887
No 209
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=90.51 E-value=60 Score=41.28 Aligned_cols=48 Identities=21% Similarity=0.380 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 739 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQE 786 (1388)
Q Consensus 739 a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~ 786 (1388)
...+..+.....+.+..+.+++|+....+.....+...+..+.+.+..
T Consensus 150 ~~k~ae~~~lr~k~dss~s~~q~e~~~~~~~~~~~~s~l~~~eke~~~ 197 (716)
T KOG4593|consen 150 EDKLAELGTLRNKLDSSLSELQWEVMLQEMRAKRLHSELQNEEKELDR 197 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444555555566666555554443333333333333333333
No 210
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=90.48 E-value=0.31 Score=50.98 Aligned_cols=29 Identities=38% Similarity=0.448 Sum_probs=25.5
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
.-.|.++|.||||||+.++.+-+.|-..+
T Consensus 2 g~vIwltGlsGsGKtTlA~~L~~~L~~~g 30 (156)
T PF01583_consen 2 GFVIWLTGLSGSGKTTLARALERRLFARG 30 (156)
T ss_dssp -EEEEEESSTTSSHHHHHHHHHHHHHHTT
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 34799999999999999999999998664
No 211
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.46 E-value=3.1 Score=44.61 Aligned_cols=56 Identities=21% Similarity=0.319 Sum_probs=21.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 846 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 846 ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
.++++.++.+++-+++.+++.++++...+++.++.+...|++....+..++.+|++
T Consensus 143 kl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~ 198 (290)
T COG4026 143 KLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKK 198 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHH
Confidence 33333333333333333333333333333333333333333333333333333333
No 212
>PF13851 GAS: Growth-arrest specific micro-tubule binding
Probab=90.41 E-value=22 Score=39.07 Aligned_cols=23 Identities=22% Similarity=0.146 Sum_probs=8.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 839 EVENLKGLLQSQTQTADEAKQAF 861 (1388)
Q Consensus 839 e~~~Lk~ei~~l~~~~~ele~~~ 861 (1388)
++..|+-+.+.++.....++.+.
T Consensus 101 ~l~~Lk~e~evL~qr~~kle~Er 123 (201)
T PF13851_consen 101 ELKDLKWEHEVLEQRFEKLEQER 123 (201)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333333333
No 213
>PTZ00301 uridine kinase; Provisional
Probab=90.37 E-value=0.22 Score=55.09 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
|-|+|.||||||+.|+.|.+-|.
T Consensus 6 IgIaG~SgSGKTTla~~l~~~l~ 28 (210)
T PTZ00301 6 IGISGASGSGKSSLSTNIVSELM 28 (210)
T ss_pred EEEECCCcCCHHHHHHHHHHHHH
Confidence 67999999999999999987774
No 214
>PRK08233 hypothetical protein; Provisional
Probab=90.28 E-value=0.19 Score=53.99 Aligned_cols=25 Identities=36% Similarity=0.430 Sum_probs=22.3
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.-|.|+|.||||||+.++.+...|.
T Consensus 4 ~iI~I~G~~GsGKtTla~~L~~~l~ 28 (182)
T PRK08233 4 KIITIAAVSGGGKTTLTERLTHKLK 28 (182)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhCC
Confidence 5688999999999999999998874
No 215
>KOG0982 consensus Centrosomal protein Nuf [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=90.28 E-value=43 Score=39.88 Aligned_cols=20 Identities=15% Similarity=0.087 Sum_probs=8.5
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000617 780 EIAKLQEALHAMQLRVDDAN 799 (1388)
Q Consensus 780 E~~~L~~~le~l~~~l~~~~ 799 (1388)
+++.++..+..++.+..+++
T Consensus 298 e~Enlqmr~qqleeentelR 317 (502)
T KOG0982|consen 298 EKENLQMRDQQLEEENTELR 317 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHH
Confidence 34444444444444433333
No 216
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=90.22 E-value=13 Score=42.31 Aligned_cols=36 Identities=25% Similarity=0.476 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 868 NGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 903 (1388)
Q Consensus 868 ~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~ 903 (1388)
...+..++.+++..+..+..+....+.....|+.+.
T Consensus 77 k~~Le~e~~e~~~~i~~l~ee~~~ke~Ea~~lq~el 112 (246)
T PF00769_consen 77 KEQLEQELREAEAEIARLEEESERKEEEAEELQEEL 112 (246)
T ss_dssp ----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 333333444444444444444444444444444443
No 217
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=90.21 E-value=36 Score=44.72 Aligned_cols=21 Identities=24% Similarity=0.469 Sum_probs=15.4
Q ss_pred cccCCeEEEeeCCCCCCCCCC
Q 000617 479 NATAPHYIRCVKPNNVLKPSI 499 (1388)
Q Consensus 479 ~~t~~hfIrCikPn~~~~~~~ 499 (1388)
..|.++||.|=+|.....|..
T Consensus 421 ~~~~Ve~llcT~~~~~~~~~P 441 (717)
T PF10168_consen 421 SPCIVEYLLCTKPLSSSAPNP 441 (717)
T ss_pred CCcceEEEeccCCCCCCCCCC
Confidence 345689999999977665543
No 218
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=90.04 E-value=0.29 Score=49.57 Aligned_cols=27 Identities=26% Similarity=0.455 Sum_probs=24.6
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
....++|.|++|+|||..++.+.+.+.
T Consensus 18 ~~~~v~i~G~~G~GKT~l~~~i~~~~~ 44 (151)
T cd00009 18 PPKNLLLYGPPGTGKTTLARAIANELF 44 (151)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhh
Confidence 467899999999999999999999886
No 219
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=90.04 E-value=0.22 Score=49.88 Aligned_cols=28 Identities=36% Similarity=0.507 Sum_probs=25.1
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
.+.|+|.|.+|+|||+.++.+...+...
T Consensus 2 ~~~~~l~G~~G~GKTtl~~~l~~~~~~~ 29 (148)
T smart00382 2 GEVILIVGPPGSGKTTLARALARELGPP 29 (148)
T ss_pred CCEEEEECCCCCcHHHHHHHHHhccCCC
Confidence 5789999999999999999999888654
No 220
>COG4026 Uncharacterized protein containing TOPRIM domain, potential nuclease [General function prediction only]
Probab=90.01 E-value=3.1 Score=44.66 Aligned_cols=63 Identities=25% Similarity=0.307 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 893 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~le 893 (1388)
.+++++.+++..|..++++++.+.++...++..++.++..+...++.+..+...|.+..++++
T Consensus 142 ekl~E~~~EkeeL~~eleele~e~ee~~erlk~le~E~s~LeE~~~~l~~ev~~L~~r~~ELe 204 (290)
T COG4026 142 EKLEELQKEKEELLKELEELEAEYEEVQERLKRLEVENSRLEEMLKKLPGEVYDLKKRWDELE 204 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHhc
Confidence 344555555555555555555555555555555555555333333333333333333333333
No 221
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=89.97 E-value=31 Score=37.07 Aligned_cols=24 Identities=8% Similarity=0.321 Sum_probs=11.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 780 EIAKLQEALHAMQLRVDDANSLVI 803 (1388)
Q Consensus 780 E~~~L~~~le~l~~~l~~~~~~l~ 803 (1388)
....|+.+...+..++++-+.++.
T Consensus 43 DFeqLkien~~l~~kIeERn~eL~ 66 (177)
T PF13870_consen 43 DFEQLKIENQQLNEKIEERNKELL 66 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 334444445555555555444443
No 222
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=89.94 E-value=69 Score=41.07 Aligned_cols=30 Identities=27% Similarity=0.362 Sum_probs=13.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 879 EKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 879 e~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
++....+.+.+.++.+....|..|..++++
T Consensus 305 ~~~~~~l~~~l~~~~~~~~~l~~e~~~v~~ 334 (560)
T PF06160_consen 305 EKNLKELYEYLEHAKEQNKELKEELERVSQ 334 (560)
T ss_pred HHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444444444444444443
No 223
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=89.82 E-value=72 Score=41.14 Aligned_cols=76 Identities=24% Similarity=0.237 Sum_probs=50.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 910 (1388)
Q Consensus 835 ~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~ 910 (1388)
.+..+...+...++...+...+.......++...++...++++++.++.++..+++....+...+++|+..|+...
T Consensus 542 ~l~~el~~~~~~le~~kk~~~e~~~~~~~Lq~~~ek~~~~le~i~~~~~e~~~ele~~~~k~~rleEE~e~L~~kl 617 (698)
T KOG0978|consen 542 KLIKELTTLTQSLEMLKKKAQEAKQSLEDLQIELEKSEAKLEQIQEQYAELELELEIEKFKRKRLEEELERLKRKL 617 (698)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4444444455555555666666666666666666666677777777777777777777777777777777777544
No 224
>cd02028 UMPK_like Uridine monophosphate kinase_like (UMPK_like) is a family of proteins highly similar to the uridine monophosphate kinase (UMPK, EC 2.7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK).
Probab=89.73 E-value=0.27 Score=53.01 Aligned_cols=24 Identities=38% Similarity=0.484 Sum_probs=22.0
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|.|+|.||||||+.++.+...|..
T Consensus 2 i~i~G~sgsGKttla~~l~~~l~~ 25 (179)
T cd02028 2 VGIAGPSGSGKTTFAKKLSNQLRV 25 (179)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999998863
No 225
>PRK07261 topology modulation protein; Provisional
Probab=89.71 E-value=0.25 Score=52.75 Aligned_cols=23 Identities=30% Similarity=0.460 Sum_probs=20.3
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-|+|.|.||||||+.++.+.+.+
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~ 24 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHY 24 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHh
Confidence 48999999999999999987654
No 226
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=89.57 E-value=0.31 Score=52.23 Aligned_cols=25 Identities=32% Similarity=0.513 Sum_probs=22.0
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
..-||++|-||||||+.+|.+.+-+
T Consensus 2 ~~~i~l~G~~gsGKst~a~~l~~~~ 26 (175)
T cd00227 2 GRIIILNGGSSAGKSSIARALQSVL 26 (175)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhh
Confidence 4579999999999999999887765
No 227
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=89.49 E-value=0.25 Score=52.33 Aligned_cols=23 Identities=43% Similarity=0.645 Sum_probs=21.1
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-|+|+|++|||||+.++.+.+.|
T Consensus 2 iI~i~G~~GSGKstia~~la~~l 24 (171)
T TIGR02173 2 IITISGPPGSGKTTVAKILAEKL 24 (171)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 48999999999999999998876
No 228
>PRK08118 topology modulation protein; Reviewed
Probab=89.40 E-value=0.31 Score=51.94 Aligned_cols=25 Identities=28% Similarity=0.498 Sum_probs=22.2
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
+-|+|.|.+|||||+.++.+-+.+-
T Consensus 2 ~rI~I~G~~GsGKSTlak~L~~~l~ 26 (167)
T PRK08118 2 KKIILIGSGGSGKSTLARQLGEKLN 26 (167)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 4599999999999999999988763
No 229
>PRK06762 hypothetical protein; Provisional
Probab=89.38 E-value=0.29 Score=51.82 Aligned_cols=24 Identities=42% Similarity=0.632 Sum_probs=22.4
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
..|+++|.+|||||+.++.+.+.+
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l 26 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERL 26 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999999888
No 230
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=89.29 E-value=40 Score=41.26 Aligned_cols=75 Identities=13% Similarity=0.198 Sum_probs=39.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
++..+..+.+.|..-++.+++..+..+..+....+...+-.-.+ -+.+.+.++.-+.++-+.+.+.-++.++.++
T Consensus 663 Elq~~~~~~~~L~~~iET~~~~~~KQ~~H~~~v~~al~K~~Y~l--~~~Q~~~iqsiL~~L~~~i~~~~k~VK~i~~ 737 (741)
T KOG4460|consen 663 ELQLIPDQLRHLGNAIETVTMKKDKQQQHMEKVLSALPKPTYIL--SAYQRKCIQSILKELGEHIREMVKQVKDIRN 737 (741)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCcccc--cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34444455555555555555555554444333333322111111 1555666777777777777766666665553
No 231
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=89.27 E-value=0.3 Score=50.22 Aligned_cols=22 Identities=36% Similarity=0.712 Sum_probs=20.6
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|+|.+|||||+.++.+...+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~ 23 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKL 23 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999876
No 232
>PRK06696 uridine kinase; Validated
Probab=89.25 E-value=0.29 Score=54.67 Aligned_cols=29 Identities=17% Similarity=0.251 Sum_probs=24.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
++.--|.|+|.||||||+.|+.|.+.|-.
T Consensus 20 ~~~~iI~I~G~sgsGKSTlA~~L~~~l~~ 48 (223)
T PRK06696 20 TRPLRVAIDGITASGKTTFADELAEEIKK 48 (223)
T ss_pred CCceEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 34567899999999999999999998853
No 233
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=89.25 E-value=0.3 Score=47.85 Aligned_cols=25 Identities=32% Similarity=0.408 Sum_probs=22.8
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
|.|.|++|.|||..++.+++++...
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~~~ 25 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLLKH 25 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHHHH
Confidence 6899999999999999999999754
No 234
>PF08826 DMPK_coil: DMPK coiled coil domain like; InterPro: IPR014930 This domain is found in the myotonic dystrophy protein kinase (DMPK) and adopts a coiled coil structure. It plays a role in dimerisation []. ; GO: 0004674 protein serine/threonine kinase activity, 0005524 ATP binding, 0006468 protein phosphorylation; PDB: 1WT6_D.
Probab=89.24 E-value=5.5 Score=34.70 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 857 AKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 857 le~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
+..++...+..+-.+..++++.+.+...|..+++.+++++.++.+
T Consensus 16 ~~eEL~kvk~~n~~~e~kLqeaE~rn~eL~~ei~~L~~e~ee~r~ 60 (61)
T PF08826_consen 16 IQEELTKVKSANLAFESKLQEAEKRNRELEQEIERLKKEMEELRS 60 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 344445566666667777777777777777777777777766554
No 235
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=89.21 E-value=6.7 Score=46.12 Aligned_cols=14 Identities=36% Similarity=0.491 Sum_probs=7.8
Q ss_pred HHHHHHHHHHHHHH
Q 000617 752 LEKRVEELTWRLQI 765 (1388)
Q Consensus 752 Le~kv~~l~~~l~~ 765 (1388)
+|..+.+++.+|+.
T Consensus 257 aEqsl~dlQk~Lek 270 (575)
T KOG4403|consen 257 AEQSLEDLQKRLEK 270 (575)
T ss_pred HHHHHHHHHHHHHH
Confidence 45555566555553
No 236
>COG5185 HEC1 Protein involved in chromosome segregation, interacts with SMC proteins [Cell division and chromosome partitioning]
Probab=89.14 E-value=59 Score=39.19 Aligned_cols=27 Identities=19% Similarity=0.270 Sum_probs=11.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 834 NSLTAEVENLKGLLQSQTQTADEAKQA 860 (1388)
Q Consensus 834 ~~L~~e~~~Lk~ei~~l~~~~~ele~~ 860 (1388)
+.|+.+++.-+++++.|+.+.+++..+
T Consensus 333 ~kl~~eie~kEeei~~L~~~~d~L~~q 359 (622)
T COG5185 333 EKLKSEIELKEEEIKALQSNIDELHKQ 359 (622)
T ss_pred HHHHHHHHHHHHHHHHHHhhHHHHHHH
Confidence 334444444444444444444444333
No 237
>PRK14737 gmk guanylate kinase; Provisional
Probab=89.10 E-value=0.28 Score=53.21 Aligned_cols=26 Identities=19% Similarity=0.365 Sum_probs=22.4
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.--|||+|.||||||+.++.+++.+
T Consensus 3 ~~~~ivl~GpsG~GK~tl~~~l~~~~ 28 (186)
T PRK14737 3 SPKLFIISSVAGGGKSTIIQALLEEH 28 (186)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhcC
Confidence 34569999999999999999998765
No 238
>COG1660 Predicted P-loop-containing kinase [General function prediction only]
Probab=89.09 E-value=0.26 Score=54.78 Aligned_cols=19 Identities=42% Similarity=0.714 Sum_probs=16.6
Q ss_pred EEEEecCcCCchHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKML 27 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i 27 (1388)
-|||||-||||||+..+-+
T Consensus 3 lvIVTGlSGAGKsvAl~~l 21 (286)
T COG1660 3 LVIVTGLSGAGKSVALRVL 21 (286)
T ss_pred EEEEecCCCCcHHHHHHHH
Confidence 4899999999999987754
No 239
>PRK09270 nucleoside triphosphate hydrolase domain-containing protein; Reviewed
Probab=89.07 E-value=0.47 Score=53.31 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhhC
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 36 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~ 36 (1388)
++..-|.|+|.||||||+.++.+...|..-++
T Consensus 31 ~~~~iigi~G~~GsGKTTl~~~L~~~l~~~~g 62 (229)
T PRK09270 31 QRRTIVGIAGPPGAGKSTLAEFLEALLQQDGE 62 (229)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhhhccC
Confidence 56778999999999999999999999976544
No 240
>cd02025 PanK Pantothenate kinase (PanK) catalyzes the phosphorylation of pantothenic acid to form 4'-phosphopantothenic, which is the first of five steps in coenzyme A (CoA) biosynthetic pathway. The reaction carried out by this enzyme is a key regulatory point in CoA biosynthesis.
Probab=89.06 E-value=0.3 Score=54.47 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=21.1
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|-|+|.||||||+.++.|...|..
T Consensus 2 igI~G~sGSGKTTla~~L~~~l~~ 25 (220)
T cd02025 2 IGIAGSVAVGKSTTARVLQALLSR 25 (220)
T ss_pred EEeeCCCCCCHHHHHHHHHHHHhh
Confidence 568999999999999999988853
No 241
>PF10186 Atg14: UV radiation resistance protein and autophagy-related subunit 14; InterPro: IPR018791 Class III phosphatidylinositol 3-kinase (PI3-kinase) regulates multiple membrane trafficking. In yeast, two distinct PI3-kinase complexes are known: complex I (Vps34, Vps15, Vps30/Atg6, and Atg14) is involved in autophagy, and complex II (Vps34, Vps15, Vps30/Atg6, and Vps38) functions in the vacuolar protein sorting pathway. In mammals, the counterparts of Vps34, Vps15, and Vps30/Atg6 are Vps34, p150, and Beclin 1, respectively. Mammalian UV irradiation resistance-associated gene (UVRAG) has been identified as identical to yeast Vps38 []. The Atg14 (autophagy-related protein 14) proteins are hydrophilic proteins and have a coiled-coil motif at the N terminus region. Yeast cells with mutant Atg14 are defective not only in autophagy but also in sorting of carboxypeptidase Y (CPY), a vacuolar-soluble hydrolase, to the vacuole []. This entry represents Atg14 and UVRAG, which bind Beclin 1 to forms two distinct PI3-kinase complexes. This entry also includes Bakor (beclin-1-associated autophagy-related key regulator), also known as autophagy-related protein 14-like protein, which share sequence similarity to the yeast Atg14 protein []. Barkor positively regulates autophagy through its interaction with Beclin-1, with decreased levels of autophagosome formation observed when Barkor expression is eliminated []. Autophagy mediates the cellular response to nutrient deprivation, protein aggregation, and pathogen invasion in humans, and malfunction of autophagy has been implicated in multiple human diseases including cancer. ; GO: 0010508 positive regulation of autophagy
Probab=89.01 E-value=9.1 Score=44.65 Aligned_cols=79 Identities=11% Similarity=0.239 Sum_probs=43.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
..++..++..+..++..++.+++++++...++.+++..++.....+.............+.+....+...+.....+..
T Consensus 62 ~~~~~~~~~r~~~l~~~i~~~~~~i~~~r~~l~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 140 (302)
T PF10186_consen 62 KREIEELRERLERLRERIERLRKRIEQKRERLEELRESLEQRRSRLSASQDLVESRQEQLEELQNELEERKQRLSQLQS 140 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3445556666666666666666666666666666666655555544433334444444444444455545554444443
No 242
>PRK06217 hypothetical protein; Validated
Probab=88.97 E-value=0.29 Score=52.88 Aligned_cols=22 Identities=36% Similarity=0.527 Sum_probs=20.8
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|+|-||||||+.++.+-+.|
T Consensus 4 I~i~G~~GsGKSTla~~L~~~l 25 (183)
T PRK06217 4 IHITGASGSGTTTLGAALAERL 25 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 9999999999999999998876
No 243
>cd02024 NRK1 Nicotinamide riboside kinase (NRK) is an enzyme involved in the metabolism of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the phosphorylation of nicotinamide riboside (NR) to form nicotinamide mononucleotide (NMN). It defines the NR salvage pathway of NAD+ biosynthesis in addition to the pathways through nicotinic acid mononucleotide (NaMN). This enzyme can also phosphorylate the anticancer drug tiazofurin, which is an analog of nicotinamide riboside.
Probab=88.88 E-value=0.29 Score=52.96 Aligned_cols=22 Identities=41% Similarity=0.610 Sum_probs=20.0
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|.|+|-||||||+.|+.+...+
T Consensus 2 i~i~G~sgsGKTtla~~l~~~~ 23 (187)
T cd02024 2 VGISGVTNSGKTTLAKLLQRIL 23 (187)
T ss_pred EEEECCCCCCHHHHHHHHHHHc
Confidence 7899999999999999988765
No 244
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=88.86 E-value=0.31 Score=52.85 Aligned_cols=27 Identities=33% Similarity=0.661 Sum_probs=23.5
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
....|+|+|++|||||+..+.++.++-
T Consensus 24 ~g~~i~I~G~tGSGKTTll~aL~~~i~ 50 (186)
T cd01130 24 ARKNILISGGTGSGKTTLLNALLAFIP 50 (186)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcC
Confidence 356899999999999999999888763
No 245
>KOG2129 consensus Uncharacterized conserved protein H4 [Function unknown]
Probab=88.85 E-value=57 Score=38.64 Aligned_cols=35 Identities=26% Similarity=0.174 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 748 AKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIA 782 (1388)
Q Consensus 748 ~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~ 782 (1388)
...++|++-.--+-.|++.++...+++....+|.+
T Consensus 166 ki~Klen~t~~kq~~leQLRre~V~lentlEQEqE 200 (552)
T KOG2129|consen 166 KIRKLENKTLLKQNTLEQLRREAVQLENTLEQEQE 200 (552)
T ss_pred HHHHhhhhhHHhhhhHHHHHHHHHHHhhHHHHHHH
Confidence 33344443333333334444444445444444443
No 246
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=88.77 E-value=0.3 Score=56.02 Aligned_cols=26 Identities=38% Similarity=0.478 Sum_probs=23.2
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
-.|+|+|++|||||++.+.++.++..
T Consensus 81 GlilisG~tGSGKTT~l~all~~i~~ 106 (264)
T cd01129 81 GIILVTGPTGSGKTTTLYSALSELNT 106 (264)
T ss_pred CEEEEECCCCCcHHHHHHHHHhhhCC
Confidence 46999999999999999999999853
No 247
>PRK10751 molybdopterin-guanine dinucleotide biosynthesis protein B; Provisional
Probab=88.76 E-value=0.48 Score=50.53 Aligned_cols=28 Identities=29% Similarity=0.258 Sum_probs=24.6
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
.-.|.|.|.||||||+.++.+++.|...
T Consensus 6 ~~ii~ivG~sgsGKTTLi~~li~~l~~~ 33 (173)
T PRK10751 6 IPLLAIAAWSGTGKTTLLKKLIPALCAR 33 (173)
T ss_pred ceEEEEECCCCChHHHHHHHHHHHHhhc
Confidence 3478899999999999999999999754
No 248
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=88.75 E-value=0.28 Score=53.18 Aligned_cols=25 Identities=28% Similarity=0.326 Sum_probs=21.2
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.|+|.|.||||||+..+.+...+
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~ 26 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQRE 26 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccC
Confidence 3579999999999999999985543
No 249
>cd00071 GMPK Guanosine monophosphate kinase (GMPK, EC 2.7.4.8), also known as guanylate kinase (GKase), catalyzes the reversible phosphoryl transfer from adenosine triphosphate (ATP) to guanosine monophosphate (GMP) to yield adenosine diphosphate (ADP) and guanosine diphosphate (GDP). It plays an essential role in the biosynthesis of guanosine triphosphate (GTP). This enzyme is also important for the activation of some antiviral and anticancer agents, such as acyclovir, ganciclovir, carbovir, and thiopurines.
Probab=88.73 E-value=0.28 Score=50.39 Aligned_cols=22 Identities=41% Similarity=0.628 Sum_probs=20.3
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|.|.||||||+.++.+++.+
T Consensus 2 i~i~GpsGsGKstl~~~L~~~~ 23 (137)
T cd00071 2 IVLSGPSGVGKSTLLKRLLEEF 23 (137)
T ss_pred EEEECCCCCCHHHHHHHHHhcC
Confidence 7899999999999999999876
No 250
>TIGR03007 pepcterm_ChnLen polysaccharide chain length determinant protein, PEP-CTERM locus subfamily. Members of this protein family belong to the family of polysaccharide chain length determinant proteins (pfam02706). All are found in species that encode the PEP-CTERM/exosortase system predicted to act in protein sorting in a number of Gram-negative bacteria, and are found near the epsH homolog that is the putative exosortase gene.
Probab=88.70 E-value=27 Score=44.07 Aligned_cols=23 Identities=35% Similarity=0.447 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 780 EIAKLQEALHAMQLRVDDANSLV 802 (1388)
Q Consensus 780 E~~~L~~~le~l~~~l~~~~~~l 802 (1388)
....++.++...+.++.++++.+
T Consensus 205 ~l~~l~~~l~~~~~~l~~~~a~~ 227 (498)
T TIGR03007 205 EISEAQEELEAARLELNEAIAQR 227 (498)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444333
No 251
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=88.68 E-value=39 Score=45.10 Aligned_cols=18 Identities=6% Similarity=0.154 Sum_probs=8.7
Q ss_pred HHhccCCCCCHHHHHHHH
Q 000617 1287 ITNDLCPVLSIQQLYRIS 1304 (1388)
Q Consensus 1287 i~~~~C~~L~~~Qi~kiL 1304 (1388)
|+-|.-|.+......-++
T Consensus 659 IiID~pp~~~~~d~~~l~ 676 (754)
T TIGR01005 659 VVVDVGTADPVRDMRAAA 676 (754)
T ss_pred EEEcCCCcchhHHHHHhh
Confidence 334555555545544333
No 252
>PF05729 NACHT: NACHT domain
Probab=88.64 E-value=0.38 Score=50.39 Aligned_cols=27 Identities=33% Similarity=0.468 Sum_probs=24.0
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
-++|+|+.|+|||+.++.++..++.-.
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~ 28 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEE 28 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcC
Confidence 589999999999999999999887653
No 253
>PRK00889 adenylylsulfate kinase; Provisional
Probab=88.60 E-value=0.5 Score=50.53 Aligned_cols=30 Identities=30% Similarity=0.398 Sum_probs=26.3
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
++...|++.|.+|||||+.++.+..+|...
T Consensus 2 ~~g~~i~~~G~~GsGKST~a~~la~~l~~~ 31 (175)
T PRK00889 2 QRGVTVWFTGLSGAGKTTIARALAEKLREA 31 (175)
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 355689999999999999999999999643
No 254
>PRK00131 aroK shikimate kinase; Reviewed
Probab=88.42 E-value=0.42 Score=50.69 Aligned_cols=26 Identities=35% Similarity=0.551 Sum_probs=23.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+...|++.|.+|||||+.++.+-+.|
T Consensus 3 ~~~~i~l~G~~GsGKstla~~La~~l 28 (175)
T PRK00131 3 KGPNIVLIGFMGAGKSTIGRLLAKRL 28 (175)
T ss_pred CCCeEEEEcCCCCCHHHHHHHHHHHh
Confidence 45699999999999999999998887
No 255
>PLN03188 kinesin-12 family protein; Provisional
Probab=88.40 E-value=76 Score=43.31 Aligned_cols=21 Identities=38% Similarity=0.629 Sum_probs=17.9
Q ss_pred CCCCeEEEEecCcCCchHHHH
Q 000617 4 EGKSNSILVSGESGAGKTETT 24 (1388)
Q Consensus 4 ~~~~QsIi~sGeSGaGKT~~~ 24 (1388)
+|-|=||+..|.+|||||.|.
T Consensus 163 dGyNaTIFAYGQTGSGKTYTM 183 (1320)
T PLN03188 163 AGFNSSVFAYGQTGSGKTYTM 183 (1320)
T ss_pred cCCcceeecCCCCCCCCCEee
Confidence 567889999999999999765
No 256
>PRK06547 hypothetical protein; Provisional
Probab=88.33 E-value=0.42 Score=51.10 Aligned_cols=28 Identities=32% Similarity=0.464 Sum_probs=23.5
Q ss_pred CCCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 4 EGKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 4 ~~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.....-|+|+|.||||||+.++.+.+-+
T Consensus 12 ~~~~~~i~i~G~~GsGKTt~a~~l~~~~ 39 (172)
T PRK06547 12 GGGMITVLIDGRSGSGKTTLAGALAART 39 (172)
T ss_pred cCCCEEEEEECCCCCCHHHHHHHHHHHh
Confidence 4556778999999999999999988764
No 257
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=88.29 E-value=0.29 Score=51.64 Aligned_cols=22 Identities=27% Similarity=0.507 Sum_probs=20.5
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|++.|.||||||+.++.+-+.+
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l 22 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRL 22 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhc
Confidence 6899999999999999999887
No 258
>TIGR02977 phageshock_pspA phage shock protein A. Members of this family are the phage shock protein PspA, from the phage shock operon. This is a narrower family than the set of PspA and its homologs, sometimes several in a genome, as described by PFAM model pfam04012. PspA appears to maintain the protonmotive force under stress conditions that include overexpression of certain phage secretins, heat shock, ethanol, and protein export defects.
Probab=88.25 E-value=48 Score=36.99 Aligned_cols=75 Identities=17% Similarity=0.269 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------HHHHHHHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKR-----------VDELQDSVQRLAEKVS 897 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~-----------i~~Lq~el~~lee~i~ 897 (1388)
.+..+..|+.+...++..++.++..+.+++.++.+++.....+..+...++.+ .......++++++++.
T Consensus 97 ~~~~~~~l~~~~~~~~~~v~~l~~~l~~L~~ki~~~k~k~~~l~ar~~~A~a~~~~~~~~~~~~~~~a~~~fer~e~ki~ 176 (219)
T TIGR02977 97 AQELAEALERELAAVEETLAKLQEDIAKLQAKLAEARARQKALAIRHQAASSRLDVRRQLDSGRSDEAMARFEQYERRVD 176 (219)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHH
Confidence 45566677777777777777777777777777777776666555544444332 1223345555555555
Q ss_pred HHHHHH
Q 000617 898 NLESEN 903 (1388)
Q Consensus 898 ~Le~E~ 903 (1388)
.++.+-
T Consensus 177 ~~ea~a 182 (219)
T TIGR02977 177 ELEAQA 182 (219)
T ss_pred HHHHHH
Confidence 555443
No 259
>PF03205 MobB: Molybdopterin guanine dinucleotide synthesis protein B; PDB: 2F1R_B 1P9N_A 1NP6_B 2NPI_A 1XJC_A.
Probab=88.14 E-value=0.47 Score=48.96 Aligned_cols=27 Identities=30% Similarity=0.402 Sum_probs=24.6
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
.|.|.|.+|||||+.++.++++|...+
T Consensus 2 vv~VvG~~~sGKTTl~~~Li~~l~~~g 28 (140)
T PF03205_consen 2 VVQVVGPKNSGKTTLIRKLINELKRRG 28 (140)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhHcC
Confidence 478999999999999999999998665
No 260
>KOG4403 consensus Cell surface glycoprotein STIM, contains SAM domain [General function prediction only]
Probab=88.08 E-value=65 Score=38.36 Aligned_cols=30 Identities=13% Similarity=0.267 Sum_probs=13.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 876 KDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 876 ~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.++..+|-++...+.+.. ..|.+.+++-+|
T Consensus 393 DdVD~kIleak~al~evt---t~lrErl~RWqQ 422 (575)
T KOG4403|consen 393 DDVDHKILEAKSALSEVT---TLLRERLHRWQQ 422 (575)
T ss_pred hhHHHHHHHHHHHHHHHH---HHHHHHHHHHHH
Confidence 344555554444443332 234444444444
No 261
>PF12846 AAA_10: AAA-like domain
Probab=88.03 E-value=0.43 Score=55.44 Aligned_cols=29 Identities=34% Similarity=0.496 Sum_probs=26.0
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
|..++|.|.||||||+.++.++.+++..+
T Consensus 1 n~h~~i~G~tGsGKT~~~~~l~~~~~~~g 29 (304)
T PF12846_consen 1 NPHTLILGKTGSGKTTLLKNLLEQLIRRG 29 (304)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHHHcC
Confidence 46789999999999999999999988765
No 262
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=88.03 E-value=0.4 Score=56.08 Aligned_cols=27 Identities=37% Similarity=0.557 Sum_probs=24.5
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
...|+|+|.+|||||+.++.+++++..
T Consensus 132 ~~~ilI~G~tGSGKTTll~al~~~i~~ 158 (299)
T TIGR02782 132 RKNILVVGGTGSGKTTLANALLAEIAK 158 (299)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhhc
Confidence 458999999999999999999999864
No 263
>PF09730 BicD: Microtubule-associated protein Bicaudal-D; InterPro: IPR018477 BicD proteins consist of three coiled-coiled domains and are involved in dynein-mediated minus end-directed transport from the Golgi apparatus to the endoplasmic reticulum (ER) []. Glycogen synthase kinase-3beta (GSK-3beta) is required for the binding of BICD to dynein but not to dynactin, acting to maintain the anchoring of microtubules to the centromere []. It appears that amino-acid residues 437-617 of BicD and the kinase activity of GSK-3 are necessary for the formation of a complex between BicD and GSK-3beta in intact cells [].; GO: 0006810 transport, 0005794 Golgi apparatus
Probab=87.92 E-value=49 Score=43.05 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 835 ~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
....++..|+.++..++.++...+..... +......+++.+..++..++.....-++.+..|+++++.+..
T Consensus 363 vav~Ev~~Lk~ELk~Lk~k~~~~~~~~~~---ek~~~~~e~q~L~ekl~~lek~~re~qeri~~LE~ELr~l~~ 433 (717)
T PF09730_consen 363 VAVSEVIQLKAELKALKSKYNELEERYKQ---EKDRLESEVQNLKEKLMSLEKSSREDQERISELEKELRALSK 433 (717)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 33344444444444444444444332222 112223334444444444444444444455555555555543
No 264
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=87.89 E-value=0.38 Score=57.51 Aligned_cols=27 Identities=33% Similarity=0.637 Sum_probs=24.0
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
....|+|+|++|||||++.+.+++++.
T Consensus 121 ~~g~ili~G~tGSGKTT~l~al~~~i~ 147 (343)
T TIGR01420 121 PRGLILVTGPTGSGKSTTLASMIDYIN 147 (343)
T ss_pred cCcEEEEECCCCCCHHHHHHHHHHhhC
Confidence 346799999999999999999999874
No 265
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=87.88 E-value=0.49 Score=50.58 Aligned_cols=24 Identities=46% Similarity=0.652 Sum_probs=22.8
Q ss_pred EEEEecCcCCchHHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
++++.|.||.|||+.++.+-++|-
T Consensus 5 ~~ll~GpsGvGKT~la~~la~~l~ 28 (171)
T PF07724_consen 5 NFLLAGPSGVGKTELAKALAELLF 28 (171)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 689999999999999999999996
No 266
>PF04437 RINT1_TIP1: RINT-1 / TIP-1 family; InterPro: IPR007528 This family includes RINT-1, a Rad50 interacting protein which participates in radiation induced checkpoint control [], that interacts with Rad50 only during late S and G2/M phases. RINT1 also functions in membrane trafficking from the endoplasmic reticulum(ER) to the Golgi complex in interphase cells [, , ]. In addition to this, the TIP-1 protein, which is involved in the retrograde transport from the Golgi to the ER []. They share a similar domain organisation with an N-terminal leucine heptad repeat rich coiled coil and an ~500-residue C-terminal RINT1/TIP20 domain, which might be a protein-protein interaction module necessary for the formation of functional complexes.; PDB: 3FHN_A.
Probab=87.88 E-value=16 Score=46.18 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=84.7
Q ss_pred hhHhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhHHHHHHhhhcCCCCCcchhhHHhhchhHHHHHHhhcCcc
Q 000617 1176 LIAHWQSIVKSLNNYLKIMRANYVPSFLIRKVFTQIFSFINVQLFNSLLLRRECCSFSNGEFVKAGLAELEQWCHDSTEE 1255 (1388)
Q Consensus 1176 ~~~~~~~il~~L~~~~~~l~~~~V~~~l~~Q~f~Qlf~~ina~lfN~Ll~r~~~cs~s~G~qIr~nls~LE~W~~~~~~~ 1255 (1388)
++++....+..|...+..|+.. +++.....+...+..-|+-.+++.++++. -+|..-|.|+.+=+..| +.--+ .
T Consensus 353 ~S~el~~~L~~L~~~L~~L~~~-L~~~~f~~i~r~ia~~l~~~l~~~Il~~n-~Fs~~Ga~Ql~~D~~~L---~~~~~-~ 426 (494)
T PF04437_consen 353 PSPELVPALSLLRSRLSFLERS-LPPADFRRIWRRIASKLDDYLWESILMSN-KFSRAGAAQLQFDMRAL---FSVFS-Q 426 (494)
T ss_dssp --GGGHHHHHHHHHHHHHHHTS---HHHHHHHHHHHHHHHHHHHHHTTTTTS--B-HHHHHHHHHHHHHH---HTTS---
T ss_pred CCHHHHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHhhhcC-eeChhHHHHHHHHHHHH---HHHHH-h
Confidence 3455677899999999999999 99999999999999999999999999976 56666777777766444 43333 2
Q ss_pred cccchHHHhHHHHHHHHHHhhcCCCcCCH--------------HHHHhcc-CCCCCHHHHHHHHh
Q 000617 1256 FAGSAWDELRHIRQAVGFLVIHQKPKKTL--------------KEITNDL-CPVLSIQQLYRIST 1305 (1388)
Q Consensus 1256 ~~~~~~~~L~~i~Qa~~lLq~~kk~~~~~--------------~~i~~~~-C~~L~~~Qi~kiL~ 1305 (1388)
+....-..+..|.+++.||-++..+.... .++..+. =..||+.++.+||.
T Consensus 427 ~~~~p~~~f~~l~E~~~LL~L~~~~~~~~~~~l~~~~~~~~~~~~~l~~lgI~~Ls~~ea~~vL~ 491 (494)
T PF04437_consen 427 YTPRPEAFFKRLREACKLLNLPYGSAKLLKEFLSKSYIKNENARKLLEELGISHLSPSEARDVLY 491 (494)
T ss_dssp TTSGG-HHHHHHHHHHHHHGGGG-CGG--TTTTSHHHHHHT--SHHHHHTT-SSS-HHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHcCCCCcchhhhHHHHhhhhccchHHHHHHHHCCCCcCCHHHHHHHHH
Confidence 44444578999999999999986543322 1122111 14788888888775
No 267
>PRK11281 hypothetical protein; Provisional
Probab=87.88 E-value=36 Score=46.79 Aligned_cols=22 Identities=23% Similarity=0.042 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTA 854 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~ 854 (1388)
...|+.|...++.+++..+.++
T Consensus 194 ~~~l~ae~~~l~~~~~~~~~~l 215 (1113)
T PRK11281 194 RVLLQAEQALLNAQNDLQRKSL 215 (1113)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444443333333
No 268
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=87.87 E-value=0.16 Score=67.71 Aligned_cols=81 Identities=23% Similarity=0.321 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 829 DTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 829 ~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
....+..+..++..|..++.++...+.+....+.++++.+..++.++.+++..+.++.+.+...+.....|+-++..+++
T Consensus 424 ~~e~~e~lere~k~L~~El~dl~~q~~~~~k~v~eLek~kr~LE~e~~El~~~leE~E~~l~~~E~~~lRl~~el~~~r~ 503 (859)
T PF01576_consen 424 LQEQLEELERENKQLQDELEDLTSQLDDAGKSVHELEKAKRRLEQEKEELQEQLEEAEDALEAEEQKKLRLQVELQQLRQ 503 (859)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHhhccchhhhhhhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555666666777777777777777776666677777777666666666666777777766666666666666666665
Q ss_pred H
Q 000617 909 Q 909 (1388)
Q Consensus 909 q 909 (1388)
+
T Consensus 504 e 504 (859)
T PF01576_consen 504 E 504 (859)
T ss_dssp -
T ss_pred H
Confidence 3
No 269
>KOG1003 consensus Actin filament-coating protein tropomyosin [Cytoskeleton]
Probab=87.74 E-value=43 Score=35.94 Aligned_cols=70 Identities=20% Similarity=0.272 Sum_probs=37.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 835 SLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 904 (1388)
Q Consensus 835 ~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~ 904 (1388)
.|.....++.+..+..+.++..+..++.+.+....-....++.|+..++.|++.+....++...+.+++.
T Consensus 127 ~l~~~ee~~~q~~d~~e~~ik~ltdKLkEaE~rAE~aERsVakLeke~DdlE~kl~~~k~ky~~~~~eLD 196 (205)
T KOG1003|consen 127 SLSAKEEKLEQKEEKYEEELKELTDKLKEAETRAEFAERRVAKLEKERDDLEEKLEEAKEKYEEAKKELD 196 (205)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHcccHHHHHHhhHHHHHHHHHHHHHHH
Confidence 3444444444444444555555544444444444444555566666666666666666666555555544
No 270
>PF13870 DUF4201: Domain of unknown function (DUF4201)
Probab=87.68 E-value=38 Score=36.34 Aligned_cols=33 Identities=12% Similarity=0.147 Sum_probs=19.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTV 863 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~ 863 (1388)
...+.|+.++..+...+++-..++..+......
T Consensus 42 iDFeqLkien~~l~~kIeERn~eL~~Lk~~~~~ 74 (177)
T PF13870_consen 42 IDFEQLKIENQQLNEKIEERNKELLKLKKKIGK 74 (177)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344566666666666666666666665554444
No 271
>TIGR03263 guanyl_kin guanylate kinase. Members of this family are the enzyme guanylate kinase, also called GMP kinase. This enzyme transfers a phosphate from ATP to GMP, yielding ADP and GDP.
Probab=87.65 E-value=0.33 Score=52.09 Aligned_cols=24 Identities=38% Similarity=0.472 Sum_probs=21.8
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+-|+|.|.||||||+.++.+++.+
T Consensus 2 ~ii~l~G~~GsGKsTl~~~L~~~~ 25 (180)
T TIGR03263 2 LLIVISGPSGVGKSTLVKALLEED 25 (180)
T ss_pred cEEEEECCCCCCHHHHHHHHHccC
Confidence 569999999999999999999865
No 272
>COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism]
Probab=87.61 E-value=0.4 Score=54.07 Aligned_cols=30 Identities=20% Similarity=0.388 Sum_probs=25.2
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
+..++-+-||||+|||+++|.|++-+--.+
T Consensus 38 ~ge~~glVGESG~GKSTlgr~i~~L~~pt~ 67 (268)
T COG4608 38 EGETLGLVGESGCGKSTLGRLILGLEEPTS 67 (268)
T ss_pred CCCEEEEEecCCCCHHHHHHHHHcCcCCCC
Confidence 456788999999999999999999875433
No 273
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=87.60 E-value=0.37 Score=49.39 Aligned_cols=23 Identities=35% Similarity=0.632 Sum_probs=20.7
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
||+.|.+|||||+.++.+.+.+.
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 89999999999999999887664
No 274
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=87.55 E-value=0.44 Score=56.02 Aligned_cols=26 Identities=27% Similarity=0.479 Sum_probs=23.5
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
..|||+|..|||||+..+.++.++..
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~ 170 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVA 170 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhc
Confidence 46999999999999999999998864
No 275
>PF05483 SCP-1: Synaptonemal complex protein 1 (SCP-1); InterPro: IPR008827 Synaptonemal complex protein 1 (SCP-1) is the major component of the transverse filaments of the synaptonemal complex. Synaptonemal complexes are structures that are formed between homologous chromosomes during meiotic prophase [].; GO: 0007130 synaptonemal complex assembly, 0000795 synaptonemal complex
Probab=87.55 E-value=93 Score=39.53 Aligned_cols=33 Identities=15% Similarity=0.246 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 843 LKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL 875 (1388)
Q Consensus 843 Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l 875 (1388)
++..+..+++.++.-.+.+.+++.++..+.+++
T Consensus 592 lenk~~~LrKqvEnk~K~ieeLqqeNk~LKKk~ 624 (786)
T PF05483_consen 592 LENKCNNLRKQVENKNKNIEELQQENKALKKKI 624 (786)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHH
Confidence 444444444444444444444444444443333
No 276
>PRK14738 gmk guanylate kinase; Provisional
Probab=87.51 E-value=0.46 Score=52.45 Aligned_cols=26 Identities=27% Similarity=0.390 Sum_probs=22.3
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
....-|||+|.||||||+.++.++..
T Consensus 11 ~~~~~ivi~GpsG~GK~tl~~~L~~~ 36 (206)
T PRK14738 11 AKPLLVVISGPSGVGKDAVLARMRER 36 (206)
T ss_pred CCCeEEEEECcCCCCHHHHHHHHHhc
Confidence 35678999999999999998888764
No 277
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=87.50 E-value=0.42 Score=57.20 Aligned_cols=28 Identities=25% Similarity=0.528 Sum_probs=25.2
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
..--|+|+|++|||||++.+.+++++..
T Consensus 133 ~~glilI~GpTGSGKTTtL~aLl~~i~~ 160 (358)
T TIGR02524 133 QEGIVFITGATGSGKSTLLAAIIRELAE 160 (358)
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 4578999999999999999999999864
No 278
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=87.41 E-value=0.32 Score=57.05 Aligned_cols=29 Identities=28% Similarity=0.455 Sum_probs=25.2
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
--++-+-||||||||+++..||+-|.+-+
T Consensus 36 GEtlAlVGESGSGKSvTa~sim~LLp~~~ 64 (534)
T COG4172 36 GETLALVGESGSGKSVTALSILGLLPSPA 64 (534)
T ss_pred CCEEEEEecCCCCccHHHHHHHHhcCCCc
Confidence 34678899999999999999999998743
No 279
>PF13514 AAA_27: AAA domain
Probab=87.39 E-value=1.1e+02 Score=42.90 Aligned_cols=25 Identities=32% Similarity=0.479 Sum_probs=18.5
Q ss_pred hhHHHHHHhhcCCcccchHHHHHhhc
Q 000617 514 VLEAIRISCAGYPTRRTFYEFVNRFG 539 (1388)
Q Consensus 514 vle~iri~~~gyp~r~~~~~F~~ry~ 539 (1388)
++..|+-.-.|||.|-+|. |+.-|.
T Consensus 12 ~l~fI~~lLFGfp~r~~~~-f~~p~~ 36 (1111)
T PF13514_consen 12 LLAFIRDLLFGFPTRSPYN-FYHPKN 36 (1111)
T ss_pred HHHHHHHHhcCCCCCCCcc-cCCCCC
Confidence 4556777779999999887 765444
No 280
>COG0572 Udk Uridine kinase [Nucleotide transport and metabolism]
Probab=87.38 E-value=0.46 Score=52.20 Aligned_cols=26 Identities=38% Similarity=0.597 Sum_probs=22.0
Q ss_pred CeEEE--EecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSIL--VSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi--~sGeSGaGKT~~~k~i~~yla 32 (1388)
+++|| |+|-||||||+.|+.|..-|-
T Consensus 6 ~~~iiIgIaG~SgSGKTTva~~l~~~~~ 33 (218)
T COG0572 6 EKVIIIGIAGGSGSGKTTVAKELSEQLG 33 (218)
T ss_pred CceEEEEEeCCCCCCHHHHHHHHHHHhC
Confidence 55555 689999999999999998885
No 281
>PF03668 ATP_bind_2: P-loop ATPase protein family; InterPro: IPR005337 This entry represents UPF0042 nucleotide-binding proteins. This is a family of putative P-loop ATPases [], as they contain an ATP-binding site and display ATPase and GTPase activities.; GO: 0005524 ATP binding
Probab=87.33 E-value=0.41 Score=54.57 Aligned_cols=20 Identities=35% Similarity=0.680 Sum_probs=17.1
Q ss_pred eEEEEecCcCCchHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKML 27 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i 27 (1388)
+-|||+|-||||||+..+.+
T Consensus 2 ~~vIiTGlSGaGKs~Al~~l 21 (284)
T PF03668_consen 2 ELVIITGLSGAGKSTALRAL 21 (284)
T ss_pred eEEEEeCCCcCCHHHHHHHH
Confidence 56999999999999987654
No 282
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.31 E-value=0.4 Score=53.25 Aligned_cols=26 Identities=38% Similarity=0.572 Sum_probs=22.0
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
--+++-|.||||||++.|+|-|-+--
T Consensus 28 ef~vliGpSGsGKTTtLkMINrLiep 53 (309)
T COG1125 28 EFLVLIGPSGSGKTTTLKMINRLIEP 53 (309)
T ss_pred eEEEEECCCCCcHHHHHHHHhcccCC
Confidence 35788999999999999999887643
No 283
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=87.29 E-value=0.5 Score=49.28 Aligned_cols=24 Identities=33% Similarity=0.470 Sum_probs=22.3
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|++.|.||||||+.++.+.+++..
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~ 25 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQ 25 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 789999999999999999999863
No 284
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=87.01 E-value=0.47 Score=56.95 Aligned_cols=27 Identities=22% Similarity=0.352 Sum_probs=24.3
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
+--|+|+|++|||||++.+.+++|+..
T Consensus 149 ~GlilI~G~TGSGKTT~l~al~~~i~~ 175 (372)
T TIGR02525 149 AGLGLICGETGSGKSTLAASIYQHCGE 175 (372)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 346899999999999999999999975
No 285
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.98 E-value=32 Score=41.35 Aligned_cols=20 Identities=20% Similarity=0.381 Sum_probs=9.6
Q ss_pred HHHHHHHHHHHHHHHHHHHH
Q 000617 887 DSVQRLAEKVSNLESENQVL 906 (1388)
Q Consensus 887 ~el~~lee~i~~Le~E~~~L 906 (1388)
+.+...+++|..|++++..|
T Consensus 428 ~~~~s~d~~I~dLqEQlrDl 447 (493)
T KOG0804|consen 428 EALGSKDEKITDLQEQLRDL 447 (493)
T ss_pred HHHHHHHHHHHHHHHHHHhH
Confidence 34444445555555554443
No 286
>PF13245 AAA_19: Part of AAA domain
Probab=86.95 E-value=0.73 Score=42.17 Aligned_cols=28 Identities=32% Similarity=0.336 Sum_probs=23.5
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.+...+|.|..|||||+++..++.++..
T Consensus 9 ~~~~~vv~g~pGtGKT~~~~~~i~~l~~ 36 (76)
T PF13245_consen 9 GSPLFVVQGPPGTGKTTTLAARIAELLA 36 (76)
T ss_pred hCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3566778999999999888888888874
No 287
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=86.89 E-value=0.56 Score=48.77 Aligned_cols=25 Identities=40% Similarity=0.444 Sum_probs=23.0
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
++|.|++|+|||+.++.++..++.-
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~ 26 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATK 26 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhc
Confidence 6899999999999999999999763
No 288
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=86.87 E-value=5.1 Score=43.84 Aligned_cols=29 Identities=28% Similarity=0.376 Sum_probs=12.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 882 VDELQDSVQRLAEKVSNLESENQVLRQQA 910 (1388)
Q Consensus 882 i~~Lq~el~~lee~i~~Le~E~~~Lkqq~ 910 (1388)
...++.+.+++..+...|-+|+..|+.+.
T Consensus 181 ~~al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 181 VDALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 33333333334444444444444555443
No 289
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=86.82 E-value=0.5 Score=49.11 Aligned_cols=23 Identities=39% Similarity=0.628 Sum_probs=21.5
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+|++.|.+|||||+.++.+-+++
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l 23 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKAL 23 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHh
Confidence 58999999999999999998887
No 290
>PF02367 UPF0079: Uncharacterised P-loop hydrolase UPF0079; InterPro: IPR003442 This group consists of bacterial proteins, which contain a P-loop. They are probably essential to bacteria as members are found in all genomes so far sequenced and no equivalent genes have been found in the archaea and eukaryotes, suggesting the protein may be involved in cell wall biosynthesis. The sequence of YjeE, from Haemophilus influenzae, has been determined to 1.7-A resolution. The protein has a nucleotide-binding fold with a four-stranded parallel beta-sheet flanked by antiparallel beta-strands on each side. The topology of the beta-sheet is unique among P-loop proteins and has features of different families of enzymes. ADP has been shown to bind to the P-loop in the presence of Mg2+ and ATPase activity has been confirmed by kinetic measurements [].; PDB: 1HTW_A 1FL9_A.
Probab=86.79 E-value=0.59 Score=46.89 Aligned_cols=26 Identities=46% Similarity=0.618 Sum_probs=23.2
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
....|+++|+=|||||+-+|.+.+.|
T Consensus 14 ~g~vi~L~GdLGaGKTtf~r~l~~~l 39 (123)
T PF02367_consen 14 PGDVILLSGDLGAGKTTFVRGLARAL 39 (123)
T ss_dssp S-EEEEEEESTTSSHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHc
Confidence 45789999999999999999999988
No 291
>KOG4809 consensus Rab6 GTPase-interacting protein involved in endosome-to-TGN transport [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.79 E-value=31 Score=42.29 Aligned_cols=169 Identities=15% Similarity=0.117 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhCC
Q 000617 740 RETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSL--VIKEREAARKAIKEAP 817 (1388)
Q Consensus 740 ~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~--l~~e~~~~~~~~~ele 817 (1388)
.+....++..--+.....+.+.+++.......+-.+...+-.+.|+.+=-.-..+-.+.+.. ...+....+...+..-
T Consensus 236 ae~~~~~~e~~llr~t~~~~e~riEtqkqtl~ardesIkkLlEmLq~kgmg~~~~~~df~~~~~~a~~~~h~r~~~er~I 315 (654)
T KOG4809|consen 236 AELLTTKEEQFLLRSTDPSGEQRIETQKQTLDARDESIKKLLEMLQRKGMGRSNQPRDFTKANLSAHEMAHMRMKVERII 315 (654)
T ss_pred HHhhhHHHHHHHHHhcCchHHHHHHHHHhhhhhHHHHHHHHHHHHHHhhcccccchhhHHHHHHhHHHHHhhhchHHHHH
Q ss_pred ccccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 818 PVIKETPVII--QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 895 (1388)
Q Consensus 818 ~~~~e~~~l~--~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~ 895 (1388)
..+.+..++. +..++++..+.++..|++.+..+..++.+.+..+..++.....+.......+.++..+.-.++...++
T Consensus 316 erLkeqr~rderE~~EeIe~~~ke~kdLkEkv~~lq~~l~eke~sl~dlkehassLas~glk~ds~Lk~leIalEqkkEe 395 (654)
T KOG4809|consen 316 ERLKEQRERDERERLEEIESFRKENKDLKEKVNALQAELTEKESSLIDLKEHASSLASAGLKRDSKLKSLEIALEQKKEE 395 (654)
T ss_pred HHhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHH
Q 000617 896 VSNLESENQVLRQ 908 (1388)
Q Consensus 896 i~~Le~E~~~Lkq 908 (1388)
+.+++.+++.-.+
T Consensus 396 c~kme~qLkkAh~ 408 (654)
T KOG4809|consen 396 CSKMEAQLKKAHN 408 (654)
T ss_pred HHHHHHHHHHHHH
No 292
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=86.75 E-value=0.52 Score=50.67 Aligned_cols=22 Identities=45% Similarity=0.677 Sum_probs=20.8
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|.|.||||||+-|+.|.+.+
T Consensus 3 iiilG~pGaGK~T~A~~La~~~ 24 (178)
T COG0563 3 ILILGPPGAGKSTLAKKLAKKL 24 (178)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999999884
No 293
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=86.72 E-value=21 Score=40.01 Aligned_cols=39 Identities=13% Similarity=0.140 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 869 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~ 869 (1388)
.+.+.|..|.....+++.....++..+|..+..++.+..
T Consensus 39 kE~~~L~~Er~~h~eeLrqI~~DIn~lE~iIkqa~~er~ 77 (230)
T PF10146_consen 39 KEMEELLQERMAHVEELRQINQDINTLENIIKQAESERN 77 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555556666666666555555555
No 294
>PF10205 KLRAQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019343 This entry represents a N-terminal 100 residues long domain, which contains a conserved KLRAQ motif. This domain is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain a C-terminal TTKRSYEDQ motif domain (IPR019348 from INTERPRO). The function of these proteins is not known.
Probab=86.61 E-value=13 Score=35.83 Aligned_cols=69 Identities=22% Similarity=0.204 Sum_probs=43.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQ 904 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~ 904 (1388)
|-.|..+|+.+...|++.+-+......++.......+..+..++++++.|.=..+.|...+..|+.|..
T Consensus 3 la~eYsKLraQ~~vLKKaVieEQ~k~~~L~e~Lk~ke~~LRk~eqE~dSL~FrN~QL~kRV~~LQ~El~ 71 (102)
T PF10205_consen 3 LAQEYSKLRAQNQVLKKAVIEEQAKNAELKEQLKEKEQALRKLEQENDSLTFRNQQLTKRVEVLQEELE 71 (102)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777666666666666666666655555556666666666666666666666666655
No 295
>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]
Probab=86.57 E-value=17 Score=36.04 Aligned_cols=39 Identities=28% Similarity=0.406 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 869 GELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 869 ~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
.++..+++.++.++..|+.+.+++++++.+|+++....-
T Consensus 73 ~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l 111 (119)
T COG1382 73 DELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKAL 111 (119)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 445555556666666666666666666666666654433
No 296
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=86.53 E-value=0.53 Score=48.84 Aligned_cols=23 Identities=39% Similarity=0.572 Sum_probs=21.4
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
|.|||.+|||||+-++.+-+++-
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~g 25 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLG 25 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhC
Confidence 88999999999999999988874
No 297
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=86.50 E-value=0.52 Score=54.10 Aligned_cols=26 Identities=42% Similarity=0.652 Sum_probs=22.8
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...++|.|++|+|||+.++.+.+.+.
T Consensus 43 ~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 43 EGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999987764
No 298
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=86.45 E-value=0.63 Score=49.79 Aligned_cols=25 Identities=32% Similarity=0.535 Sum_probs=22.6
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
++.|++.|.+|||||+.++.+.+.+
T Consensus 4 ~~~I~liG~~GaGKStl~~~La~~l 28 (172)
T PRK05057 4 KRNIFLVGPMGAGKSTIGRQLAQQL 28 (172)
T ss_pred CCEEEEECCCCcCHHHHHHHHHHHc
Confidence 5679999999999999999998775
No 299
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=86.29 E-value=0.52 Score=54.30 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
....|+|+|+.|||||++.+.++.++-.
T Consensus 126 ~~~~ili~G~tGSGKTT~l~all~~i~~ 153 (270)
T PF00437_consen 126 GRGNILISGPTGSGKTTLLNALLEEIPP 153 (270)
T ss_dssp TTEEEEEEESTTSSHHHHHHHHHHHCHT
T ss_pred cceEEEEECCCccccchHHHHHhhhccc
Confidence 3578999999999999999999988754
No 300
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.27 E-value=13 Score=38.85 Aligned_cols=61 Identities=21% Similarity=0.428 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLA 893 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~le 893 (1388)
+..+..++..+...++.++.++++++.++..++.....+..++..++..++...+++..+.
T Consensus 61 ~~~l~~d~~~l~~~~~rL~~~~~~~ere~~~~~~~~~~l~~~~~~~~~~~k~~kee~~klk 121 (151)
T PF11559_consen 61 LRRLRSDIERLQNDVERLKEQLEELERELASAEEKERQLQKQLKSLEAKLKQEKEELQKLK 121 (151)
T ss_pred HHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444444444444444444333333333333333333333333
No 301
>PF00769 ERM: Ezrin/radixin/moesin family; InterPro: IPR011259 The ERM family consists of three closely-related proteins, ezrin, radixin and moesin []. Ezrin was first identified as a constituent of microvilli [], radixin as a barbed, end-capping actin-modulating protein from isolated junctional fractions [], and moesin as a heparin binding protein []. A tumour suppressor molecule responsible for neurofibromatosis type 2 (NF2) is highly similar to ERM proteins and has been designated merlin (moesin-ezrin-radixin-like protein). ERM molecules contain 3 domains, an N-terminal globular domain; an extended alpha-helical domain; and a charged C-terminal domain []. Ezrin, radixin and merlin also contain a polyproline region between the helical and C-terminal domains. The N-terminal domain is highly conserved, and is also found in merlin, band 4.1 proteins and members of the band 4.1 superfamily. ERM proteins crosslink actin filaments with plasma membranes. They co-localise with CD44 at actin filament-plasma membrane interaction sites, associating with CD44 via their N-terminal domains and with actin filaments via their C-terminal domains [].; GO: 0008092 cytoskeletal protein binding, 0005737 cytoplasm, 0019898 extrinsic to membrane; PDB: 2I1J_A 2I1K_A 1E5W_A 1EF1_C.
Probab=86.26 E-value=24 Score=40.08 Aligned_cols=21 Identities=14% Similarity=0.336 Sum_probs=8.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVS 897 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~ 897 (1388)
.++........+...++.++.
T Consensus 93 ~l~ee~~~ke~Ea~~lq~el~ 113 (246)
T PF00769_consen 93 RLEEESERKEEEAEELQEELE 113 (246)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 333333333333333333333
No 302
>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch. pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.
Probab=86.21 E-value=12 Score=38.95 Aligned_cols=34 Identities=12% Similarity=0.215 Sum_probs=13.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 869 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~ 869 (1388)
|......+..+++.+...++.++.++.+++.+..
T Consensus 57 l~~~~~~l~~d~~~l~~~~~rL~~~~~~~ere~~ 90 (151)
T PF11559_consen 57 LSDKLRRLRSDIERLQNDVERLKEQLEELERELA 90 (151)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333333333333
No 303
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=86.16 E-value=0.44 Score=56.64 Aligned_cols=26 Identities=31% Similarity=0.576 Sum_probs=23.4
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...|+|+|.+|||||+..+.++.++-
T Consensus 162 ~~nilI~G~tGSGKTTll~aLl~~i~ 187 (344)
T PRK13851 162 RLTMLLCGPTGSGKTTMSKTLISAIP 187 (344)
T ss_pred CCeEEEECCCCccHHHHHHHHHcccC
Confidence 46799999999999999999998874
No 304
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=85.92 E-value=0.65 Score=49.45 Aligned_cols=24 Identities=33% Similarity=0.538 Sum_probs=21.4
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|+|+|+.|+|||+..+.+++++..
T Consensus 2 i~iTG~pG~GKTTll~k~i~~l~~ 25 (168)
T PF03266_consen 2 IFITGPPGVGKTTLLKKVIEELKK 25 (168)
T ss_dssp EEEES-TTSSHHHHHHHHHHHHHH
T ss_pred EEEECcCCCCHHHHHHHHHHHhhc
Confidence 899999999999999999999964
No 305
>PRK03846 adenylylsulfate kinase; Provisional
Probab=85.90 E-value=0.85 Score=49.93 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.1
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
.+...|.+.|.||||||+.++.+.+.|...
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~ 51 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHEL 51 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 456789999999999999999999988643
No 306
>KOG0999 consensus Microtubule-associated protein Bicaudal-D [Intracellular trafficking, secretion, and vesicular transport]
Probab=85.86 E-value=98 Score=38.13 Aligned_cols=16 Identities=13% Similarity=0.214 Sum_probs=7.4
Q ss_pred HHHHHHHHHhcCCCHH
Q 000617 1187 LNNYLKIMRANYVPSF 1202 (1388)
Q Consensus 1187 L~~~~~~l~~~~V~~~ 1202 (1388)
+..+.++|+.+..-..
T Consensus 621 i~tlrtvlkankqtae 636 (772)
T KOG0999|consen 621 ITTLRTVLKANKQTAE 636 (772)
T ss_pred HHHHHHHHHHhHHHHH
Confidence 3444555555444333
No 307
>PF05911 DUF869: Plant protein of unknown function (DUF869); InterPro: IPR008587 This family consists of a number of sequences found in plants. The function of this family is unknown.
Probab=85.81 E-value=52 Score=43.28 Aligned_cols=27 Identities=11% Similarity=0.244 Sum_probs=14.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 881 RVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 881 ~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
++...-..+.+.++.|..|-++++.|.
T Consensus 734 EiaaAA~KLAECQeTI~sLGkQLksLa 760 (769)
T PF05911_consen 734 EIAAAAEKLAECQETIASLGKQLKSLA 760 (769)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 344444455555555555555555443
No 308
>PRK09825 idnK D-gluconate kinase; Provisional
Probab=85.70 E-value=0.7 Score=49.65 Aligned_cols=26 Identities=23% Similarity=0.395 Sum_probs=23.1
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...|++.|.||||||+.++.+...+.
T Consensus 3 ge~i~l~G~sGsGKSTl~~~la~~l~ 28 (176)
T PRK09825 3 GESYILMGVSGSGKSLIGSKIAALFS 28 (176)
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhcC
Confidence 45799999999999999999998764
No 309
>PF15254 CCDC14: Coiled-coil domain-containing protein 14
Probab=85.69 E-value=41 Score=43.11 Aligned_cols=36 Identities=19% Similarity=0.244 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 872 TKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 872 ~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
+-+++..|.+..-|.-.+..-+.+|.+|++=...|+
T Consensus 514 q~kLe~sekEN~iL~itlrQrDaEi~RL~eLtR~LQ 549 (861)
T PF15254_consen 514 QFKLEASEKENQILGITLRQRDAEIERLRELTRTLQ 549 (861)
T ss_pred hhhHHHHHhhhhHhhhHHHHHHHHHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444
No 310
>PRK14527 adenylate kinase; Provisional
Probab=85.68 E-value=0.8 Score=49.83 Aligned_cols=27 Identities=30% Similarity=0.478 Sum_probs=24.1
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
+...|+|.|.+|||||+.++.+.+.+.
T Consensus 5 ~~~~i~i~G~pGsGKsT~a~~La~~~~ 31 (191)
T PRK14527 5 KNKVVIFLGPPGAGKGTQAERLAQELG 31 (191)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 568899999999999999999987764
No 311
>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]
Probab=85.65 E-value=1.2e+02 Score=38.86 Aligned_cols=21 Identities=19% Similarity=0.069 Sum_probs=12.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q 000617 689 RTKAAIIAQAQWRCHQAYSYY 709 (1388)
Q Consensus 689 ~~~aAi~IQ~~~R~~~~r~~~ 709 (1388)
.++++++.++++-.-..|.+.
T Consensus 85 ~~k~~~i~~r~~~~~~dr~~~ 105 (716)
T KOG4593|consen 85 LTKAQSILARNYEAEVDRKHK 105 (716)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 345666666666655555554
No 312
>KOG1899 consensus LAR transmembrane tyrosine phosphatase-interacting protein liprin [General function prediction only]
Probab=85.65 E-value=30 Score=42.93 Aligned_cols=23 Identities=13% Similarity=0.094 Sum_probs=16.8
Q ss_pred cchhhHHhhchhHHHHHHhhcCc
Q 000617 1232 FSNGEFVKAGLAELEQWCHDSTE 1254 (1388)
Q Consensus 1232 ~s~G~qIr~nls~LE~W~~~~~~ 1254 (1388)
-+.-+-++.-=+++.+|+++.++
T Consensus 706 Psed~Vv~WTnhrvmeWLrsiDL 728 (861)
T KOG1899|consen 706 PSEDVVVRWTNHRVMEWLRSIDL 728 (861)
T ss_pred CChhHHHHhhhHHHHHHHHhccH
Confidence 34445666677889999999874
No 313
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=85.63 E-value=0.64 Score=50.09 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=21.3
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.|+|.|.+|||||+.++.+.+++
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~ 27 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKY 27 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998876
No 314
>PF12777 MT: Microtubule-binding stalk of dynein motor; InterPro: IPR024743 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules (D1-6), of which four correspond to the ATP binding sites with P-loop signatures, and two are modules in which the P loop has been lost in evolution. This domain occurs between D4 and D5 and includes the two predicted alpha-helical coiled coil segments that form the stalk supporting the ATP-sensitive microtubule binding component [].; PDB: 3VKH_A 3VKG_A 3ERR_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 2RR7_A.
Probab=85.62 E-value=29 Score=41.58 Aligned_cols=170 Identities=18% Similarity=0.248 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 732 LRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHAMQLRVDDANSLVIKEREAARK 811 (1388)
Q Consensus 732 l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~ 811 (1388)
+.++......+..++.....++..+.+.+.+.+ ...+.-....++.++-+......+..+......+...+++...
T Consensus 7 L~KL~et~~~V~~m~~~L~~~~~~L~~k~~e~e----~ll~~i~~~~~~a~~~~~~~~~ee~~~~~~~~ei~~~~~~a~~ 82 (344)
T PF12777_consen 7 LDKLKETEEQVEEMQEELEEKQPELEEKQKEAE----ELLEEIEKEQEEAEKKKAIVEEEEEEAEKQAKEIEEIKEEAEE 82 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHhCCccccccchh-----------------------------------------------------------------
Q 000617 812 AIKEAPPVIKETPVI----------------------------------------------------------------- 826 (1388)
Q Consensus 812 ~~~ele~~~~e~~~l----------------------------------------------------------------- 826 (1388)
.+.++.+.+.+...-
T Consensus 83 ~L~~a~P~L~~A~~al~~l~k~di~Eiks~~~PP~~V~~V~~aV~iLl~~~~~~~k~~~W~~ak~~l~~~~~Fl~~L~~f 162 (344)
T PF12777_consen 83 ELAEAEPALEEAQEALKSLDKSDISEIKSYANPPEAVKLVMEAVCILLGPKGKLPKDTSWESAKKLLSDSDNFLQRLKNF 162 (344)
T ss_dssp HHHHHHHHHHHHHHHHHCS-HHHHHHHHHSSS--HHHHHHHHHHHHHTT-S-SEE---HHHHHHCHHCSSTTHHHHHHHS
T ss_pred HHHHHHHHHHHHHHHHHhCCHHHHHHHHhhCCCcHHHHHHHHHHhhHHhccccccccccHHHHHHHHHhHHHHHHHHHhh
Q ss_pred ------------------------------------------------------hhhhHHHHHHHHHHHHHHHHHHHHHH
Q 000617 827 ------------------------------------------------------IQDTEKINSLTAEVENLKGLLQSQTQ 852 (1388)
Q Consensus 827 ------------------------------------------------------~~~~~~~~~L~~e~~~Lk~ei~~l~~ 852 (1388)
.=...++.+++.+....+..+++.+.
T Consensus 163 d~~~i~~~~~~~l~~~~~~p~F~~e~v~~~S~Aa~~Lc~WV~A~~~Y~~v~~~V~P~~~~l~~a~~~l~~~~~~L~~~~~ 242 (344)
T PF12777_consen 163 DKDNIPEATIKKLKKYLKNPDFNPEKVRKASKAAGSLCKWVRAMVKYYEVNKEVEPKRQKLEEAEAELEEAEEQLAEKQA 242 (344)
T ss_dssp -GGG--HHHHHHHHCTTTSTTSSHHHHHHH-TTHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHCCCCHHHHHHHHHHHHH
T ss_pred ccccccHHHHHHHHHHhcCCCCCHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 853 TADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQV 905 (1388)
Q Consensus 853 ~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~ 905 (1388)
++.+++.++..++.++++...+...++.++...+..++....-+..|..|..+
T Consensus 243 ~l~~l~~~l~~l~~~~~~~~~e~~~l~~~~~~~~~kl~rA~~Li~~L~~E~~R 295 (344)
T PF12777_consen 243 ELAELEEKLAALQKEYEEAQKEKQELEEEIEETERKLERAEKLISGLSGEKER 295 (344)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccHHHHHhhhcchhhh
No 315
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=85.54 E-value=0.62 Score=52.25 Aligned_cols=25 Identities=40% Similarity=0.656 Sum_probs=22.7
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.|+|-|.||||||+..+.++.++..
T Consensus 15 r~viIG~sGSGKT~li~~lL~~~~~ 39 (241)
T PF04665_consen 15 RMVIIGKSGSGKTTLIKSLLYYLRH 39 (241)
T ss_pred eEEEECCCCCCHHHHHHHHHHhhcc
Confidence 5899999999999999999998854
No 316
>COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning]
Probab=85.52 E-value=0.62 Score=49.64 Aligned_cols=24 Identities=29% Similarity=0.480 Sum_probs=20.2
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
--+.+.|.||||||+..|+|+.-.
T Consensus 29 ef~fl~GpSGAGKSTllkLi~~~e 52 (223)
T COG2884 29 EFVFLTGPSGAGKSTLLKLIYGEE 52 (223)
T ss_pred eEEEEECCCCCCHHHHHHHHHhhh
Confidence 356899999999999999987644
No 317
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=85.49 E-value=10 Score=34.01 Aligned_cols=60 Identities=20% Similarity=0.254 Sum_probs=34.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEK 895 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~ 895 (1388)
|+.++..|+..++.+..+++-.+.....+..+.+....++..+-.++.+|.++++.++.+
T Consensus 3 Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~e 62 (69)
T PF14197_consen 3 LEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKE 62 (69)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566666666666666666666666666666655555555555555555555444444
No 318
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=85.44 E-value=0.5 Score=58.50 Aligned_cols=29 Identities=31% Similarity=0.366 Sum_probs=25.6
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
+.+.+=|-||||||||+++..||.++-.-
T Consensus 34 ~GE~lgIvGESGsGKSt~a~~i~gll~~~ 62 (539)
T COG1123 34 PGEILGIVGESGSGKSTLALALMGLLPEG 62 (539)
T ss_pred CCcEEEEEcCCCCCHHHHHHHHhccCCCC
Confidence 45678899999999999999999999754
No 319
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=85.30 E-value=0.62 Score=48.34 Aligned_cols=22 Identities=45% Similarity=0.620 Sum_probs=19.7
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+++|.+|||||+.++.+.+-+
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~ 23 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERL 23 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhc
Confidence 7899999999999999987764
No 320
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=85.19 E-value=0.55 Score=55.66 Aligned_cols=26 Identities=31% Similarity=0.533 Sum_probs=23.2
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...|+|+|++|||||+..+.++.|+-
T Consensus 160 ~~nili~G~tgSGKTTll~aL~~~ip 185 (332)
T PRK13900 160 KKNIIISGGTSTGKTTFTNAALREIP 185 (332)
T ss_pred CCcEEEECCCCCCHHHHHHHHHhhCC
Confidence 45799999999999999999988874
No 321
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=85.14 E-value=0.7 Score=51.50 Aligned_cols=29 Identities=21% Similarity=0.212 Sum_probs=25.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.....|++.|++|+|||+.++.+.+++..
T Consensus 36 ~~~~~lll~G~~G~GKT~la~~~~~~~~~ 64 (226)
T TIGR03420 36 KGDRFLYLWGESGSGKSHLLQAACAAAEE 64 (226)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 45678999999999999999999998764
No 322
>cd02029 PRK_like Phosphoribulokinase-like (PRK-like) is a family of proteins similar to phosphoribulokinase (PRK), the enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. PRK catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=84.98 E-value=0.78 Score=52.06 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=21.6
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|-|+|-||||||+.++.+...|..
T Consensus 2 IgItG~SGSGKTTv~~~l~~~l~~ 25 (277)
T cd02029 2 IAVTGSSGAGTTTVKRAFEHIFAR 25 (277)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHh
Confidence 789999999999999999888854
No 323
>PRK04040 adenylate kinase; Provisional
Probab=84.79 E-value=0.73 Score=50.07 Aligned_cols=24 Identities=29% Similarity=0.495 Sum_probs=22.3
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.-|+|+|.+|+|||+.++.+.+.|
T Consensus 3 ~~i~v~G~pG~GKtt~~~~l~~~l 26 (188)
T PRK04040 3 KVVVVTGVPGVGKTTVLNKALEKL 26 (188)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHh
Confidence 469999999999999999999888
No 324
>COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism]
Probab=84.71 E-value=0.67 Score=51.35 Aligned_cols=28 Identities=25% Similarity=0.455 Sum_probs=23.9
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
+..++=|.||||||||+.++.++-+..-
T Consensus 32 ~Ge~lgivGeSGsGKSTL~r~l~Gl~~p 59 (252)
T COG1124 32 RGETLGIVGESGSGKSTLARLLAGLEKP 59 (252)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHhcccCC
Confidence 4578889999999999999999877753
No 325
>PF12325 TMF_TATA_bd: TATA element modulatory factor 1 TATA binding; InterPro: IPR022091 This is the C-terminal conserved coiled coil region of a family of TATA element modulatory factor 1 proteins conserved in eukaryotes []. The proteins bind to the TATA element of some RNA polymerase II promoters and repress their activity. by competing with the binding of TATA binding protein. TMF1_TATA_bd is the most conserved part of the TMFs []. TMFs are evolutionarily conserved golgins that bind Rab6, a ubiquitous ras-like GTP-binding Golgi protein, and contribute to Golgi organisation in animal [] and plant cells. The Rab6-binding domain appears to be the same region as this C-terminal family [].
Probab=84.69 E-value=18 Score=36.14 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=5.2
Q ss_pred HHHHHHHHHHHHHH
Q 000617 781 IAKLQEALHAMQLR 794 (1388)
Q Consensus 781 ~~~L~~~le~l~~~ 794 (1388)
+..++.++..+..+
T Consensus 32 ~~~l~~el~~l~~~ 45 (120)
T PF12325_consen 32 LASLQEELARLEAE 45 (120)
T ss_pred HHHHHHHHHHHHHH
Confidence 33333333333333
No 326
>PF01576 Myosin_tail_1: Myosin tail; InterPro: IPR002928 Muscle contraction is caused by sliding between the thick and thin filaments of the myofibril. Myosin is a major component of thick filaments and exists as a hexamer of 2 heavy chains [], 2 alkali light chains, and 2 regulatory light chains. The heavy chain can be subdivided into the N-terminal globular head and the C-terminal coiled-coil rod-like tail, although some forms have a globular region in their C-terminal. There are many cell-specific isoforms of myosin heavy chains, coded for by a multi-gene family []. Myosin interacts with actin to convert chemical energy, in the form of ATP, to mechanical energy []. The 3-D structure of the head portion of myosin has been determined [] and a model for actin-myosin complex has been constructed []. This family consists of the coiled-coil myosin heavy chain tail region. The coiled-coil is composed of the tail from two molecules of myosin. These can then assemble into the macromolecular thick filament []. The coiled-coil region provides the structural backbone of the thick filament [].; GO: 0003774 motor activity, 0016459 myosin complex; PDB: 2LNK_C 3ZWH_Q.
Probab=84.63 E-value=0.29 Score=65.23 Aligned_cols=33 Identities=30% Similarity=0.405 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 739 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRT 771 (1388)
Q Consensus 739 a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~ 771 (1388)
......+......|+.++.+++..|+.++..+.
T Consensus 31 ~~~~~~l~k~~kelq~~i~el~eeLe~Er~~R~ 63 (859)
T PF01576_consen 31 QALRAQLQKKIKELQARIEELEEELESERQARA 63 (859)
T ss_dssp ---------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344555666667788888888888877765444
No 327
>PRK07667 uridine kinase; Provisional
Probab=84.56 E-value=0.84 Score=49.80 Aligned_cols=26 Identities=23% Similarity=0.167 Sum_probs=22.9
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
--|-|+|.||||||+.++.+...|..
T Consensus 18 ~iIgI~G~~gsGKStla~~L~~~l~~ 43 (193)
T PRK07667 18 FILGIDGLSRSGKTTFVANLKENMKQ 43 (193)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHh
Confidence 35679999999999999999999864
No 328
>TIGR01005 eps_transp_fam exopolysaccharide transport protein family. The model describes the exopolysaccharide transport protein family in bacteria. The transport protein is part of a large genetic locus which is associated with exopolysaccharide (EPS) biosynthesis. Detailed molecular characterization and gene fusion analysis revealed atleast seven gene products are involved in the overall regulation, which among other things, include exopolysaccharide biosynthesis, property of conferring virulence and exopolysaccharide export.
Probab=84.56 E-value=1.6e+02 Score=39.41 Aligned_cols=11 Identities=36% Similarity=0.591 Sum_probs=5.4
Q ss_pred HHHHHHhhcCC
Q 000617 555 ACQMILDKKGL 565 (1388)
Q Consensus 555 ~~~~ll~~~~~ 565 (1388)
....+++.+++
T Consensus 86 v~~~VV~~L~L 96 (754)
T TIGR01005 86 ILKQVVDKLGL 96 (754)
T ss_pred HHHHHHHHcCC
Confidence 44455555544
No 329
>PF03193 DUF258: Protein of unknown function, DUF258; InterPro: IPR004881 This entry contains Escherichia coli (strain K12) RsgA, which may play a role in 30S ribosomal subunit biogenesis. RsgA is an unusual circulary permuted GTPase that catalyzes rapid hydrolysis of GTP with a slow catalytic turnover. It is dispensible for viability, but important for overall fitness. The intrinsic GTPase activity is stimulated by the presence of 30S (160-fold increase in kcat) or 70S (96 fold increase in kcat) ribosomes []. The GTPase is inhibited by aminoglycoside antibiotics such as neomycin and paromycin [] streptomycin and spectinomycin []. This inhibition is not due to competition for binding sites on the 30S or 70S ribosome []. ; GO: 0003924 GTPase activity, 0005525 GTP binding; PDB: 2YKR_W 2YV5_A 1T9H_A 2RCN_A 4A2I_V 1U0L_B.
Probab=84.49 E-value=0.88 Score=47.90 Aligned_cols=25 Identities=28% Similarity=0.477 Sum_probs=21.4
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
+++++++.|.||+|||+....++..
T Consensus 34 ~~k~~vl~G~SGvGKSSLiN~L~~~ 58 (161)
T PF03193_consen 34 KGKTSVLLGQSGVGKSSLINALLPE 58 (161)
T ss_dssp TTSEEEEECSTTSSHHHHHHHHHTS
T ss_pred cCCEEEEECCCCCCHHHHHHHHHhh
Confidence 4689999999999999988777654
No 330
>COG1340 Uncharacterized archaeal coiled-coil protein [Function unknown]
Probab=84.48 E-value=85 Score=36.24 Aligned_cols=25 Identities=20% Similarity=0.452 Sum_probs=9.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLES 901 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~ 901 (1388)
++...+..++.++.+++..+..|..
T Consensus 225 e~~ee~~~~~~elre~~k~ik~l~~ 249 (294)
T COG1340 225 ELHEEFRNLQNELRELEKKIKALRA 249 (294)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333333333333333333
No 331
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=84.42 E-value=67 Score=40.07 Aligned_cols=25 Identities=24% Similarity=0.464 Sum_probs=12.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 884 ELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 884 ~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
...+++.+.+.++..++.++...+.
T Consensus 288 ~~~~~l~~~~~~l~~~~~~l~~a~~ 312 (457)
T TIGR01000 288 KVKQEITDLNQKLLELESKIKSLKE 312 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4445555555555555555544443
No 332
>COG3074 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=84.42 E-value=19 Score=31.65 Aligned_cols=25 Identities=32% Similarity=0.450 Sum_probs=10.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 884 ELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 884 ~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.|+.+..+.......|+.||..|++
T Consensus 36 ~l~~e~q~~q~~reaL~~eneqlk~ 60 (79)
T COG3074 36 SLSQEVQNAQHQREALERENEQLKE 60 (79)
T ss_pred HhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333344444444444444444444
No 333
>PRK04182 cytidylate kinase; Provisional
Probab=84.32 E-value=0.73 Score=49.22 Aligned_cols=23 Identities=39% Similarity=0.642 Sum_probs=20.7
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-|+|+|.+|||||+.++.+-..|
T Consensus 2 ~I~i~G~~GsGKstia~~la~~l 24 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHc
Confidence 59999999999999999997765
No 334
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=84.24 E-value=0.86 Score=56.81 Aligned_cols=107 Identities=28% Similarity=0.387 Sum_probs=58.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCC-----CCCccHHHHHHhhccHHHHhccC------CCCcCCCCCcc
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGRSG-----VEGRTVEQQVLESNPVLEAFGNA------KTVRNNNSSRF 73 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~-----~~~~~ve~~il~~~~ileafGna------kT~~N~nSSRf 73 (1388)
.+||.+||-||+|||||+ .|-+||+.-|=... +..+.|.- +.-+.-+-|..|+- -|+|=++++
T Consensus 64 e~nqvlIviGeTGsGKST---QipQyL~eaG~~~~g~I~~TQPRRVAa-vslA~RVAeE~~~~lG~~VGY~IRFed~t-- 137 (674)
T KOG0922|consen 64 EDNQVLIVIGETGSGKST---QIPQYLAEAGFASSGKIACTQPRRVAA-VSLAKRVAEEMGCQLGEEVGYTIRFEDST-- 137 (674)
T ss_pred HHCCEEEEEcCCCCCccc---cHhHHHHhcccccCCcEEeecCchHHH-HHHHHHHHHHhCCCcCceeeeEEEecccC--
Confidence 369999999999999997 57889987652221 11222222 22223355566652 222222222
Q ss_pred cceEEEEEcCCCcccccccccccccccccccc-CCCCCcchhhhh
Q 000617 74 GKFVEIQFDKNGRISGAAIRTYLLERSRVCQI-SDPERNYHCFYL 117 (1388)
Q Consensus 74 gk~~~l~f~~~~~i~ga~i~tylLEksRv~~~-~~~ErnfHiFYq 117 (1388)
++=..|-|=.+|.+--=-+..=+|.+=-|+-. ..+||+-|.=-.
T Consensus 138 s~~TrikymTDG~LLRE~l~Dp~LskYsvIIlDEAHERsl~TDiL 182 (674)
T KOG0922|consen 138 SKDTRIKYMTDGMLLREILKDPLLSKYSVIILDEAHERSLHTDIL 182 (674)
T ss_pred CCceeEEEecchHHHHHHhcCCccccccEEEEechhhhhhHHHHH
Confidence 23445555555544333333334777555544 457888886533
No 335
>PRK10929 putative mechanosensitive channel protein; Provisional
Probab=84.19 E-value=1e+02 Score=42.36 Aligned_cols=23 Identities=26% Similarity=0.303 Sum_probs=9.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTAD 855 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ 855 (1388)
...|+.|...++.+++.++.+..
T Consensus 175 ~~~lqae~~~l~~~~~~l~~~l~ 197 (1109)
T PRK10929 175 LTALQAESAALKALVDELELAQL 197 (1109)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 33444444444444444444433
No 336
>PF13166 AAA_13: AAA domain
Probab=84.17 E-value=1.3e+02 Score=39.72 Aligned_cols=41 Identities=24% Similarity=0.445 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 000617 871 LTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQAL 911 (1388)
Q Consensus 871 l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~~ 911 (1388)
...++..++..+..+..++..++..+..++.+.+.|+.+..
T Consensus 415 ~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~l~~~~~ 455 (712)
T PF13166_consen 415 YQKEIKELEKEINSLEKKLKKAKEEIKKIEKEIKELEAQLK 455 (712)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 34445556666777777777777777777777777776544
No 337
>PF09789 DUF2353: Uncharacterized coiled-coil protein (DUF2353); InterPro: IPR019179 Members of this family have been annotated as being coiled-coil domain-containing protein 149, however they currently have no known function.
Probab=84.15 E-value=94 Score=36.49 Aligned_cols=22 Identities=9% Similarity=0.226 Sum_probs=9.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHH
Q 000617 781 IAKLQEALHAMQLRVDDANSLV 802 (1388)
Q Consensus 781 ~~~L~~~le~l~~~l~~~~~~l 802 (1388)
..+.+.+...++.++.+++.++
T Consensus 74 L~~sre~Nk~L~~Ev~~Lrqkl 95 (319)
T PF09789_consen 74 LSESREQNKKLKEEVEELRQKL 95 (319)
T ss_pred HHHHHHHHHHHHHHHHHHHHHH
Confidence 3344444444444444444444
No 338
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=84.13 E-value=1.1 Score=50.20 Aligned_cols=30 Identities=20% Similarity=0.309 Sum_probs=25.7
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
..+..+++.|++|+|||+.++.+.++...-
T Consensus 40 ~~~~~~~l~G~~G~GKT~La~ai~~~~~~~ 69 (227)
T PRK08903 40 VADRFFYLWGEAGSGRSHLLQALVADASYG 69 (227)
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHhC
Confidence 346789999999999999999999887543
No 339
>PF13555 AAA_29: P-loop containing region of AAA domain
Probab=84.10 E-value=1 Score=39.42 Aligned_cols=22 Identities=23% Similarity=0.465 Sum_probs=17.8
Q ss_pred EEEEecCcCCchHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~y 30 (1388)
..+|+|++|||||+..-.+.--
T Consensus 25 ~tli~G~nGsGKSTllDAi~~~ 46 (62)
T PF13555_consen 25 VTLITGPNGSGKSTLLDAIQTV 46 (62)
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999987655433
No 340
>PF10234 Cluap1: Clusterin-associated protein-1; InterPro: IPR019366 This protein of 413 amino acids contains a central coiled-coil domain, possibly the region that binds to clusterin. Cluap1 expression is highest in the nucleus and gradually increases during late S to G2/M phases of the cell cycle and returns to the basal level in the G0/G1 phases. In addition, it is upregulated in colon cancer tissues compared to corresponding non-cancerous mucosa. It thus plays a crucial role in the life of the cell [].
Probab=84.08 E-value=33 Score=39.17 Aligned_cols=68 Identities=12% Similarity=0.211 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSN 898 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~ 898 (1388)
..+..+..++..++..+..+..+-..++.++++-+.+.+..+++++.++.-.=...++-+.+++++++
T Consensus 169 ~ai~~~~~~~~~~~~~l~~l~~de~~Le~KIekkk~ELER~qKRL~sLq~vRPAfmdEyEklE~EL~~ 236 (267)
T PF10234_consen 169 EAIKAVQQQLQQTQQQLNNLASDEANLEAKIEKKKQELERNQKRLQSLQSVRPAFMDEYEKLEEELQK 236 (267)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHH
Confidence 34455555666666666666666666666666666666666666666655554455555555554444
No 341
>cd02034 CooC The accessory protein CooC, which contains a nucleotide-binding domain (P-loop) near the N-terminus, participates in the maturation of the nickel center of carbon monoxide dehydrogenase (CODH). CODH from Rhodospirillum rubrum catalyzes the reversible oxidation of CO to CO2. CODH contains a nickel-iron-sulfur cluster (C-center) and an iron-sulfur cluster (B-center). CO oxidation occurs at the C-center. Three accessory proteins encoded by cooCTJ genes are involved in nickel incorporation into a nickel site. CooC functions as a nickel insertase that mobilizes nickel to apoCODH using energy released from ATP hydrolysis. CooC is a homodimer and has NTPase activities. Mutation at the P-loop abolishs its function.
Probab=84.04 E-value=1.1 Score=44.67 Aligned_cols=26 Identities=46% Similarity=0.781 Sum_probs=24.0
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
|+++|.+|+|||+.+..+.++|+..+
T Consensus 2 i~~~GkgG~GKTt~a~~la~~l~~~g 27 (116)
T cd02034 2 IAITGKGGVGKTTIAALLARYLAEKG 27 (116)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 89999999999999999999998743
No 342
>PF03962 Mnd1: Mnd1 family; InterPro: IPR005647 This family of proteins includes meiotic nuclear division protein 1 (MND1) from Saccharomyces cerevisiae (Baker's yeast). The mnd1 protein forms a complex with hop2 to promote homologous chromosome pairing and meiotic double-strand break repair [].
Probab=84.02 E-value=9.9 Score=41.26 Aligned_cols=80 Identities=25% Similarity=0.434 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAE----KVSNLESENQVL 906 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee----~i~~Le~E~~~L 906 (1388)
..+..|+.++..++..+.+++.++++.+....+- .+...+..++.+++.++..|+.+++.... .+..+..+...+
T Consensus 69 ~~~~~l~~~~~~~~~~i~~l~~~i~~~~~~r~~~-~eR~~~l~~l~~l~~~~~~l~~el~~~~~~Dp~~i~~~~~~~~~~ 147 (188)
T PF03962_consen 69 NKLEKLQKEIEELEKKIEELEEKIEEAKKGREES-EEREELLEELEELKKELKELKKELEKYSENDPEKIEKLKEEIKIA 147 (188)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 3444444555555555555555554443332222 23345666777777777777777775543 677777777777
Q ss_pred HHHHh
Q 000617 907 RQQAL 911 (1388)
Q Consensus 907 kqq~~ 911 (1388)
+..+.
T Consensus 148 ~~~an 152 (188)
T PF03962_consen 148 KEAAN 152 (188)
T ss_pred HHHHH
Confidence 76543
No 343
>PF10146 zf-C4H2: Zinc finger-containing protein ; InterPro: IPR018482 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents a family of proteins which appears to have a highly conserved zinc finger domain at the C-terminal end, described as -C-X2-CH-X3-H-X5-C-X2-C-. The structure is predicted to contain a coiled coil. Members of this family are annotated as being tumour-associated antigen HCA127 in humans, but this could not be confirmed.
Probab=83.91 E-value=43 Score=37.57 Aligned_cols=52 Identities=25% Similarity=0.324 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 858 KQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 858 e~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
..++.....++..++.-+++++.+....++.+..+.+++..|..+...++..
T Consensus 52 ~eeLrqI~~DIn~lE~iIkqa~~er~~~~~~i~r~~eey~~Lk~~in~~R~e 103 (230)
T PF10146_consen 52 VEELRQINQDINTLENIIKQAESERNKRQEKIQRLYEEYKPLKDEINELRKE 103 (230)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3333333333343333333444444444444444444444444444444433
No 344
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=83.88 E-value=1.2 Score=46.93 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=27.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
.+.-.|-++|-||||||+.|..+=+.|-..|
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G 51 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKG 51 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcC
Confidence 3456899999999999999999999998776
No 345
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=83.85 E-value=1.1 Score=47.84 Aligned_cols=27 Identities=44% Similarity=0.580 Sum_probs=24.2
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
.|++.|++|+|||+.+..+...++..+
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g 28 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKG 28 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCC
Confidence 488999999999999999999988764
No 346
>PF07475 Hpr_kinase_C: HPr Serine kinase C-terminal domain; InterPro: IPR011104 Two-component signal transduction systems enable bacteria to sense, respond, and adapt to a wide range of environments, stressors, and growth conditions []. Some bacteria can contain up to as many as 200 two-component systems that need tight regulation to prevent unwanted cross-talk []. These pathways have been adapted to response to a wide variety of stimuli, including nutrients, cellular redox state, changes in osmolarity, quorum signals, antibiotics, and more []. Two-component systems are comprised of a sensor histidine kinase (HK) and its cognate response regulator (RR) []. The HK catalyses its own auto-phosphorylation followed by the transfer of the phosphoryl group to the receiver domain on RR; phosphorylation of the RR usually activates an attached output domain, which can then effect changes in cellular physiology, often by regulating gene expression. Some HK are bifunctional, catalysing both the phosphorylation and dephosphorylation of their cognate RR. The input stimuli can regulate either the kinase or phosphatase activity of the bifunctional HK. A variant of the two-component system is the phospho-relay system. Here a hybrid HK auto-phosphorylates and then transfers the phosphoryl group to an internal receiver domain, rather than to a separate RR protein. The phosphoryl group is then shuttled to histidine phosphotransferase (HPT) and subsequently to a terminal RR, which can evoke the desired response [, ]. This entry represents the C-terminal kinase domain of Hpr Serine/threonine kinase PtsK. This kinase is the sensor in a multicomponent phosphorelay system in control of carbon catabolic repression in bacteria []. This kinase in unusual in that it recognises the tertiary structure of its target and is a member of a novel family unrelated to any previously described protein phosphorylating enzymes []. X-ray analysis of the full-length crystalline enzyme from Staphylococcus xylosus at a resolution of 1.95 A shows the enzyme to consist of two clearly separated domains that are assembled in a hexameric structure resembling a three-bladed propeller [].; GO: 0000155 two-component sensor activity, 0004672 protein kinase activity, 0005524 ATP binding, 0000160 two-component signal transduction system (phosphorelay), 0006109 regulation of carbohydrate metabolic process; PDB: 2QMH_C 1KKM_B 1KKL_C 1JB1_A 3TQF_B 1KNX_B 1KO7_A.
Probab=83.83 E-value=0.9 Score=47.96 Aligned_cols=23 Identities=35% Similarity=0.634 Sum_probs=20.4
Q ss_pred CeEEEEecCcCCchHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMR 29 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~ 29 (1388)
...|++.|+||+|||++|--+++
T Consensus 18 G~GVLi~G~SG~GKS~lAl~Li~ 40 (171)
T PF07475_consen 18 GVGVLITGPSGIGKSELALELIK 40 (171)
T ss_dssp TEEEEEEESTTSSHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 45799999999999999988775
No 347
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=83.75 E-value=1.2 Score=55.12 Aligned_cols=123 Identities=23% Similarity=0.296 Sum_probs=65.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhhCC-CC----CCCccHHHHHHhhccHHHHhccCCCCcCCCCCcc----cc
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLGGR-SG----VEGRTVEQQVLESNPVLEAFGNAKTVRNNNSSRF----GK 75 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~-~~----~~~~~ve~~il~~~~ileafGnakT~~N~nSSRf----gk 75 (1388)
+.||.|||.||+|||||+ .+-+||..-|=. .+ +..+.|.. +.-+..+-|-.|-.-...=.-|=|| |.
T Consensus 369 r~n~vvvivgETGSGKTT---Ql~QyL~edGY~~~GmIGcTQPRRvAA-iSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~ 444 (1042)
T KOG0924|consen 369 RENQVVVIVGETGSGKTT---QLAQYLYEDGYADNGMIGCTQPRRVAA-ISVAKRVAEEMGVTLGDTVGYSIRFEDVTSE 444 (1042)
T ss_pred hhCcEEEEEecCCCCchh---hhHHHHHhcccccCCeeeecCchHHHH-HHHHHHHHHHhCCccccccceEEEeeecCCC
Confidence 579999999999999998 466788765411 11 11122221 1111223333322111111223444 33
Q ss_pred eEEEEEcCCCcccccccccccccccccc-ccCCCCCcc--hhhhhhhcCCHhhHhhcCC
Q 000617 76 FVEIQFDKNGRISGAAIRTYLLERSRVC-QISDPERNY--HCFYLLCAAPHEDIAKYKL 131 (1388)
Q Consensus 76 ~~~l~f~~~~~i~ga~i~tylLEksRv~-~~~~~Ernf--HiFYql~~~~~~~~~~~~L 131 (1388)
-..|-|-.+|.+---.+..-.|+|-+|| .-...||.- .|..=|+.-...++..|+|
T Consensus 445 ~T~IkymTDGiLLrEsL~d~~L~kYSviImDEAHERslNtDilfGllk~~larRrdlKl 503 (1042)
T KOG0924|consen 445 DTKIKYMTDGILLRESLKDRDLDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKL 503 (1042)
T ss_pred ceeEEEeccchHHHHHhhhhhhhheeEEEechhhhcccchHHHHHHHHHHHHhhccceE
Confidence 4556666677776667777778886655 445678754 4555555422344444444
No 348
>PF09738 DUF2051: Double stranded RNA binding protein (DUF2051); InterPro: IPR019139 This entry represents transcriptional repressors which preferentially bind to the GC-rich consensus sequence (5'-AGCCCCCGGCG-3') and may regulate expression of TNF, EGFR and PDGFA. They may control smooth muscle cell proliferation following artery injury through PDGFA repression and may also bind double-stranded RNA. They interact with the leucine-rich repeat domain of human flightless-I (FliI) protein.
Probab=83.74 E-value=65 Score=37.64 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=42.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 833 INSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKV 896 (1388)
Q Consensus 833 ~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i 896 (1388)
+..|..++..|.-+++-|++++++++..+..++.++.+....+..+...+..++.++..+++.+
T Consensus 100 naQLDNek~~l~yqvd~Lkd~lee~eE~~~~~~re~~eK~~elEr~K~~~d~L~~e~~~Lre~L 163 (302)
T PF09738_consen 100 NAQLDNEKSALMYQVDLLKDKLEELEETLAQLQREYREKIRELERQKRAHDSLREELDELREQL 163 (302)
T ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4467777777888888888888888888888877776554444444444555555555444444
No 349
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=83.62 E-value=1.3e+02 Score=37.51 Aligned_cols=16 Identities=19% Similarity=0.306 Sum_probs=11.6
Q ss_pred HHHHHHHHHHHHhhhh
Q 000617 1016 TSIFDRIIQTISGAIE 1031 (1388)
Q Consensus 1016 ~~ll~~ii~~I~~~v~ 1031 (1388)
...+..-+..|+..|+
T Consensus 277 ~~~Lk~H~~svr~HI~ 292 (475)
T PRK10361 277 ESALQEHIASVRNHIR 292 (475)
T ss_pred HHHHHHHHHHHHHHHH
Confidence 5677777777777775
No 350
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=83.57 E-value=0.9 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.493 Sum_probs=24.4
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
....|+|+|.+|||||+.++.++.++..
T Consensus 147 ~~~~ilI~G~tGSGKTTll~aL~~~~~~ 174 (319)
T PRK13894 147 AHRNILVIGGTGSGKTTLVNAIINEMVI 174 (319)
T ss_pred cCCeEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3468999999999999999999988754
No 351
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=83.55 E-value=55 Score=42.00 Aligned_cols=29 Identities=17% Similarity=0.450 Sum_probs=14.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 881 RVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 881 ~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
.+..++.+++++++++.++-.++...+++
T Consensus 347 ~le~L~~el~~l~~~l~~~a~~Ls~~R~~ 375 (563)
T TIGR00634 347 SLEALEEEVDKLEEELDKAAVALSLIRRK 375 (563)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44445555555555555555555555443
No 352
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=83.55 E-value=0.97 Score=46.22 Aligned_cols=22 Identities=36% Similarity=0.614 Sum_probs=20.6
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|++.|++|+|||+.++.+.+-+
T Consensus 2 vlL~G~~G~GKt~l~~~la~~~ 23 (139)
T PF07728_consen 2 VLLVGPPGTGKTTLARELAALL 23 (139)
T ss_dssp EEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 7999999999999999988887
No 353
>PF05010 TACC: Transforming acidic coiled-coil-containing protein (TACC); InterPro: IPR007707 This family contains the proteins TACC 1, 2 and 3, found concentrated in the centrosomes of eukaryotes which may play a conserved role in organising centrosomal microtubules. The human TACC proteins have been linked to cancer and TACC2 has been identified as a possible tumour suppressor (AZU-1) [].
Probab=83.51 E-value=76 Score=34.96 Aligned_cols=25 Identities=12% Similarity=0.117 Sum_probs=14.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 779 QEIAKLQEALHAMQLRVDDANSLVI 803 (1388)
Q Consensus 779 ~E~~~L~~~le~l~~~l~~~~~~l~ 803 (1388)
.|+..+...+..++....++..+..
T Consensus 76 ~erdq~~~dL~s~E~sfsdl~~rye 100 (207)
T PF05010_consen 76 KERDQAYADLNSLEKSFSDLHKRYE 100 (207)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHH
Confidence 4555555556666666666655553
No 354
>KOG1103 consensus Predicted coiled-coil protein [Function unknown]
Probab=83.51 E-value=93 Score=35.92 Aligned_cols=18 Identities=33% Similarity=0.457 Sum_probs=10.3
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000617 750 NKLEKRVEELTWRLQIEK 767 (1388)
Q Consensus 750 ~~Le~kv~~l~~~l~~e~ 767 (1388)
+-||+..+++++.++-+.
T Consensus 142 ~~LEKEReqL~QQiEFe~ 159 (561)
T KOG1103|consen 142 AHLEKEREQLQQQIEFEI 159 (561)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 346666666666665443
No 355
>KOG0243 consensus Kinesin-like protein [Cytoskeleton]
Probab=83.49 E-value=1.3e+02 Score=40.66 Aligned_cols=6 Identities=33% Similarity=0.756 Sum_probs=2.5
Q ss_pred HHHHHH
Q 000617 174 QEAIFR 179 (1388)
Q Consensus 174 ~~~i~~ 179 (1388)
|..||.
T Consensus 109 Q~d~Y~ 114 (1041)
T KOG0243|consen 109 QEDLYD 114 (1041)
T ss_pred HHHHHH
Confidence 444443
No 356
>PRK06761 hypothetical protein; Provisional
Probab=83.49 E-value=0.8 Score=52.74 Aligned_cols=26 Identities=38% Similarity=0.556 Sum_probs=23.7
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.-|+|+|.+|||||+.++.+.++|..
T Consensus 4 ~lIvI~G~~GsGKTTla~~L~~~L~~ 29 (282)
T PRK06761 4 KLIIIEGLPGFGKSTTAKMLNDILSQ 29 (282)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 47999999999999999999999864
No 357
>TIGR00176 mobB molybdopterin-guanine dinucleotide biosynthesis protein MobB. This molybdenum cofactor biosynthesis enzyme is similar to the urease accessory protein UreG and to the hydrogenase accessory protein HypB, both GTP hydrolases involved in loading nickel into the metallocenters of their respective target enzymes.
Probab=83.48 E-value=1 Score=47.23 Aligned_cols=26 Identities=27% Similarity=0.420 Sum_probs=23.4
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
|.|.|.+|||||+.+..++..|...|
T Consensus 2 i~i~G~~gsGKTtl~~~l~~~l~~~G 27 (155)
T TIGR00176 2 LQIVGPKNSGKTTLIERLVKALKARG 27 (155)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHhcC
Confidence 67899999999999999999997653
No 358
>PF10498 IFT57: Intra-flagellar transport protein 57 ; InterPro: IPR019530 Eukaryotic cilia and flagella are specialised organelles found at the periphery of cells of diverse organisms. Intra-flagellar transport (IFT) is required for the assembly and maintenance of eukaryotic cilia and flagella, and consists of the bi-directional movement of large protein particles between the base and the distal tip of the organelle. IFT particles contain multiple copies of two distinct protein complexes, A and B, which contain at least 6 and 11 protein subunits. IFT57 is part of complex B but is not, however, required for the core subunits to stay associated []. This protein is known as Huntington-interacting protein-1 in humans.
Probab=83.48 E-value=13 Score=44.36 Aligned_cols=6 Identities=17% Similarity=0.838 Sum_probs=2.6
Q ss_pred CCCCch
Q 000617 497 PSIFEN 502 (1388)
Q Consensus 497 ~~~fd~ 502 (1388)
|..||.
T Consensus 63 p~e~DD 68 (359)
T PF10498_consen 63 PQEYDD 68 (359)
T ss_pred CcccCC
Confidence 444443
No 359
>PRK08356 hypothetical protein; Provisional
Probab=83.32 E-value=0.79 Score=50.05 Aligned_cols=22 Identities=32% Similarity=0.365 Sum_probs=19.3
Q ss_pred eEEEEecCcCCchHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMR 29 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~ 29 (1388)
--|+|+|.+|||||+.++++-.
T Consensus 6 ~~i~~~G~~gsGK~t~a~~l~~ 27 (195)
T PRK08356 6 MIVGVVGKIAAGKTTVAKFFEE 27 (195)
T ss_pred EEEEEECCCCCCHHHHHHHHHH
Confidence 3588999999999999999854
No 360
>COG2433 Uncharacterized conserved protein [Function unknown]
Probab=83.30 E-value=20 Score=44.67 Aligned_cols=23 Identities=17% Similarity=0.336 Sum_probs=10.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 780 EIAKLQEALHAMQLRVDDANSLV 802 (1388)
Q Consensus 780 E~~~L~~~le~l~~~l~~~~~~l 802 (1388)
|+..|+..+++++.+++.+++++
T Consensus 437 e~~~L~~~~ee~k~eie~L~~~l 459 (652)
T COG2433 437 ENSELKRELEELKREIEKLESEL 459 (652)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444444444444444444
No 361
>PRK15453 phosphoribulokinase; Provisional
Probab=83.26 E-value=0.95 Score=51.80 Aligned_cols=26 Identities=35% Similarity=0.529 Sum_probs=21.3
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.=-|.|+|-||||||+.++.+-.-|
T Consensus 4 k~piI~ItG~SGsGKTTva~~l~~if 29 (290)
T PRK15453 4 KHPIIAVTGSSGAGTTTVKRAFEKIF 29 (290)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34469999999999999998777555
No 362
>TIGR00455 apsK adenylylsulfate kinase (apsK). Important residue (active site in E.coli) is residue 100 of the seed alignment.
Probab=83.24 E-value=0.98 Score=48.76 Aligned_cols=28 Identities=29% Similarity=0.432 Sum_probs=24.5
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
+.-.|+++|.||||||+.++.+..++..
T Consensus 17 ~~~~i~i~G~~GsGKstla~~l~~~l~~ 44 (184)
T TIGR00455 17 RGVVIWLTGLSGSGKSTIANALEKKLES 44 (184)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHH
Confidence 3458999999999999999999999853
No 363
>PRK08727 hypothetical protein; Validated
Probab=83.12 E-value=1.2 Score=50.15 Aligned_cols=29 Identities=28% Similarity=0.321 Sum_probs=25.3
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
..+.|++.|.||+|||+.+..+...++..
T Consensus 40 ~~~~l~l~G~~G~GKThL~~a~~~~~~~~ 68 (233)
T PRK08727 40 SSDWLYLSGPAGTGKTHLALALCAAAEQA 68 (233)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 34679999999999999999999887754
No 364
>KOG0018 consensus Structural maintenance of chromosome protein 1 (sister chromatid cohesion complex Cohesin, subunit SMC1) [Cell cycle control, cell division, chromosome partitioning]
Probab=83.08 E-value=1.8e+02 Score=39.02 Aligned_cols=39 Identities=15% Similarity=0.184 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 831 EKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNG 869 (1388)
Q Consensus 831 ~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~ 869 (1388)
....+++.....++..++.+......+...+.++.....
T Consensus 402 ~~~~elE~r~k~l~~sver~~~~~~~L~~~i~s~~~~~~ 440 (1141)
T KOG0018|consen 402 ERRAELEARIKQLKESVERLDKRRNKLAAKITSLSRSYE 440 (1141)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344455555555555555555555555544444444444
No 365
>KOG3354 consensus Gluconate kinase [Carbohydrate transport and metabolism]
Probab=83.06 E-value=1 Score=46.17 Aligned_cols=25 Identities=40% Similarity=0.492 Sum_probs=22.4
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
=.|+|.|.||||||+..|.+-.-|-
T Consensus 13 ~~i~vmGvsGsGKSTigk~L~~~l~ 37 (191)
T KOG3354|consen 13 YVIVVMGVSGSGKSTIGKALSEELG 37 (191)
T ss_pred eeEEEEecCCCChhhHHHHHHHHhC
Confidence 3799999999999999999987774
No 366
>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal. Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.
Probab=82.86 E-value=27 Score=34.44 Aligned_cols=32 Identities=16% Similarity=0.231 Sum_probs=14.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTADEAKQAFTV 863 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~ 863 (1388)
....++.+...+..++..++.++.+.+..+.+
T Consensus 11 ~~q~~q~~~~~l~~q~~~le~~~~E~~~v~~e 42 (110)
T TIGR02338 11 QLQQLQQQLQAVATQKQQVEAQLKEAEKALEE 42 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33444444444444444444444444444433
No 367
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=82.80 E-value=1.3 Score=50.66 Aligned_cols=30 Identities=20% Similarity=0.459 Sum_probs=26.0
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
..-.+++.|++|+|||+.++.+-+.|...+
T Consensus 41 ~~~~vll~GppGtGKTtlA~~ia~~l~~~~ 70 (261)
T TIGR02881 41 QVLHMIFKGNPGTGKTTVARILGKLFKEMN 70 (261)
T ss_pred CcceEEEEcCCCCCHHHHHHHHHHHHHhcC
Confidence 346799999999999999999999987654
No 368
>COG4477 EzrA Negative regulator of septation ring formation [Cell division and chromosome partitioning]
Probab=82.80 E-value=1.3e+02 Score=37.24 Aligned_cols=14 Identities=14% Similarity=0.126 Sum_probs=10.5
Q ss_pred eeccceeeecchhh
Q 000617 569 QIGKTKVFLRAGQM 582 (1388)
Q Consensus 569 ~iGktkVFlr~~~~ 582 (1388)
-.|.|+.+|+.+--
T Consensus 57 L~GQTe~~Fe~Wrq 70 (570)
T COG4477 57 LTGQTETKFEEWRQ 70 (570)
T ss_pred ccCccHHHHHHHHH
Confidence 47888888887653
No 369
>PRK14528 adenylate kinase; Provisional
Probab=82.59 E-value=1.1 Score=48.50 Aligned_cols=24 Identities=38% Similarity=0.602 Sum_probs=21.6
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.|+|.|.+|||||+.++.+.+.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~ 25 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERL 25 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 469999999999999999998776
No 370
>PRK10646 ADP-binding protein; Provisional
Probab=82.58 E-value=1.1 Score=46.76 Aligned_cols=25 Identities=32% Similarity=0.519 Sum_probs=22.7
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
-.|++.|+-|||||+-+|.+.+.|.
T Consensus 29 ~vi~L~GdLGaGKTtf~rgl~~~Lg 53 (153)
T PRK10646 29 TVIYLYGDLGAGKTTFSRGFLQALG 53 (153)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 4788999999999999999999983
No 371
>PF08172 CASP_C: CASP C terminal; InterPro: IPR012955 This domain is the C-terminal region of the CASP family of proteins. These are Golgi membrane proteins which are thought to have a role in vesicle transport [].; GO: 0006891 intra-Golgi vesicle-mediated transport, 0030173 integral to Golgi membrane
Probab=82.55 E-value=10 Score=42.94 Aligned_cols=44 Identities=16% Similarity=0.348 Sum_probs=29.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 866 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 866 ~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
++.+...++..+||+++..+..++..++.++..|+++|-+|=.+
T Consensus 86 sQRDRFR~Rn~ELE~elr~~~~~~~~L~~Ev~~L~~DN~kLYEK 129 (248)
T PF08172_consen 86 SQRDRFRQRNAELEEELRKQQQTISSLRREVESLRADNVKLYEK 129 (248)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33445555666777777777777777777777777777666554
No 372
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=82.55 E-value=1.1 Score=51.20 Aligned_cols=28 Identities=32% Similarity=0.628 Sum_probs=24.6
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
..+==|+|+|.+|||||++.-.++.|+-
T Consensus 123 ~~~GLILVTGpTGSGKSTTlAamId~iN 150 (353)
T COG2805 123 SPRGLILVTGPTGSGKSTTLAAMIDYIN 150 (353)
T ss_pred CCCceEEEeCCCCCcHHHHHHHHHHHHh
Confidence 3455699999999999999999999994
No 373
>PRK12704 phosphodiesterase; Provisional
Probab=82.54 E-value=1.5e+02 Score=37.63 Aligned_cols=15 Identities=7% Similarity=-0.152 Sum_probs=8.6
Q ss_pred HhHHHHHHHHHHhhc
Q 000617 1263 ELRHIRQAVGFLVIH 1277 (1388)
Q Consensus 1263 ~L~~i~Qa~~lLq~~ 1277 (1388)
.+..|+++++.|...
T Consensus 415 ~~a~IV~~ADaLsa~ 429 (520)
T PRK12704 415 IEAVLVAAADAISAA 429 (520)
T ss_pred HHHHHHHHHHHHhCc
Confidence 455566666655543
No 374
>cd01983 Fer4_NifH The Fer4_NifH superfamily contains a variety of proteins which share a common ATP-binding domain. Functionally, proteins in this superfamily use the energy from hydrolysis of NTP to transfer electron or ion.
Probab=82.54 E-value=1.3 Score=41.40 Aligned_cols=25 Identities=40% Similarity=0.496 Sum_probs=23.2
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
|+++|..|+|||+.+..+...|+..
T Consensus 2 ~~~~g~~G~Gktt~~~~l~~~l~~~ 26 (99)
T cd01983 2 IVVTGKGGVGKTTLAANLAAALAKR 26 (99)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHC
Confidence 7899999999999999999999874
No 375
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=82.39 E-value=1.1 Score=48.05 Aligned_cols=27 Identities=33% Similarity=0.346 Sum_probs=23.3
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
+++|.|++|+|||..+-.++...+..+
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g 27 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARG 27 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCC
Confidence 489999999999999998888877554
No 376
>COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only]
Probab=82.36 E-value=0.82 Score=53.84 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=27.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
++.|++=+-||||||||+....+++-+.+-
T Consensus 311 ~~gqTlGlVGESGSGKsTlG~allrL~~s~ 340 (534)
T COG4172 311 RRGQTLGLVGESGSGKSTLGLALLRLIPSQ 340 (534)
T ss_pred cCCCeEEEEecCCCCcchHHHHHHhhcCcC
Confidence 568999999999999999999999988654
No 377
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=82.34 E-value=1.1 Score=53.94 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=26.3
Q ss_pred CCCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 4 EGKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 4 ~~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.+...+++|+|++|+|||.+++.+++.+..
T Consensus 37 ~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~ 66 (365)
T TIGR02928 37 GSRPSNVFIYGKTGTGKTAVTKYVMKELEE 66 (365)
T ss_pred CCCCCcEEEECCCCCCHHHHHHHHHHHHHH
Confidence 355689999999999999999999998854
No 378
>PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional
Probab=82.33 E-value=1 Score=53.49 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.6
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 31 ~~Ge~~~ivG~sGsGKSTLl~~i~Gl~ 57 (330)
T PRK15093 31 TEGEIRGLVGESGSGKSLIAKAICGVT 57 (330)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHccC
Confidence 467889999999999999999988765
No 379
>PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems. ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D ....
Probab=82.31 E-value=1.1 Score=45.66 Aligned_cols=27 Identities=26% Similarity=0.437 Sum_probs=22.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
..+.+.|.|++|||||+..+.+.....
T Consensus 10 ~g~~~~i~G~nGsGKStLl~~l~g~~~ 36 (137)
T PF00005_consen 10 PGEIVAIVGPNGSGKSTLLKALAGLLP 36 (137)
T ss_dssp TTSEEEEEESTTSSHHHHHHHHTTSSH
T ss_pred CCCEEEEEccCCCccccceeeeccccc
Confidence 568899999999999999887766554
No 380
>TIGR00554 panK_bact pantothenate kinase, bacterial type. Shown to be a homodimer in E. coli. This enzyme catalyzes the rate-limiting step in the biosynthesis of coenzyme A. It is very well conserved from E. coli to B. subtilis, but differs considerably from known eukaryotic forms, described in a separate model.
Probab=82.29 E-value=1.8 Score=50.23 Aligned_cols=29 Identities=24% Similarity=0.370 Sum_probs=23.6
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
..--|-|+|.||||||+.++.+...+...
T Consensus 61 ~p~IIGIaG~~GSGKSTlar~L~~ll~~~ 89 (290)
T TIGR00554 61 IPYIISIAGSVAVGKSTTARILQALLSRW 89 (290)
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHhhc
Confidence 44567799999999999999888777643
No 381
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=82.22 E-value=1.3 Score=51.36 Aligned_cols=29 Identities=28% Similarity=0.358 Sum_probs=26.0
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
+...|++.|.+|+|||+++..+..|++.-
T Consensus 193 ~~~vi~~vGptGvGKTTt~~kLa~~~~~~ 221 (282)
T TIGR03499 193 QGGVIALVGPTGVGKTTTLAKLAARFVLE 221 (282)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHH
Confidence 45689999999999999999999999865
No 382
>PRK13768 GTPase; Provisional
Probab=82.14 E-value=1.2 Score=50.81 Aligned_cols=27 Identities=37% Similarity=0.559 Sum_probs=24.6
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
.|+|+|.+|+|||+.+..+..+++..|
T Consensus 4 ~i~v~G~~G~GKTt~~~~~~~~l~~~g 30 (253)
T PRK13768 4 IVFFLGTAGSGKTTLTKALSDWLEEQG 30 (253)
T ss_pred EEEEECCCCccHHHHHHHHHHHHHhcC
Confidence 689999999999999999999998654
No 383
>PF00625 Guanylate_kin: Guanylate kinase; InterPro: IPR008144 Guanylate kinase (2.7.4.8 from EC) (GK) [] catalyzes the ATP-dependent phosphorylation of GMP into GDP. It is essential for recycling GMP and indirectly, cGMP. In prokaryotes (such as Escherichia coli), lower eukaryotes (such as yeast) and in vertebrates, GK is a highly conserved monomeric protein of about 200 amino acids. GK has been shown [, , ] to be structurally similar to protein A57R (or SalG2R) from various strains of Vaccinia virus. Proteins containing one or more copies of the DHR domain, an SH3 domain as well as a C-terminal GK-like domain, are collectively termed MAGUKs (membrane-associated guanylate kinase homologs) [], and include Drosophila lethal(1)discs large-1 tumor suppressor protein (gene dlg1); mammalian tight junction protein Zo-1; a family of mammalian synaptic proteins that seem to interact with the cytoplasmic tail of NMDA receptor subunits (SAP90/PSD-95, CHAPSYN-110/PSD-93, SAP97/DLG1 and SAP102); vertebrate 55kDa erythrocyte membrane protein (p55); Caenorhabditis elegans protein lin-2; rat protein CASK; and human proteins DLG2 and DLG3. There is an ATP-binding site (P-loop) in the N-terminal section of GK, which is not conserved in the GK-like domain of the above proteins. However these proteins retain the residues known, in GK, to be involved in the binding of GMP.; GO: 0005515 protein binding; PDB: 3UAT_A 3KFV_A 2ANC_F 2F3T_E 2ANB_A 2AN9_A 1S96_A 2F3R_B 3TR0_A 1LVG_A ....
Probab=82.13 E-value=1.1 Score=48.26 Aligned_cols=26 Identities=31% Similarity=0.548 Sum_probs=22.7
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
..-||++|.||||||+.++.+++-+-
T Consensus 2 ~r~ivl~Gpsg~GK~~l~~~L~~~~~ 27 (183)
T PF00625_consen 2 RRPIVLVGPSGSGKSTLAKRLIQEFP 27 (183)
T ss_dssp SSEEEEESSTTSSHHHHHHHHHHHST
T ss_pred CCEEEEECCCCCCHHHHHHHHHHhcc
Confidence 35699999999999999999998763
No 384
>TIGR01166 cbiO cobalt transport protein ATP-binding subunit. This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux.
Probab=82.13 E-value=1.1 Score=48.53 Aligned_cols=27 Identities=26% Similarity=0.372 Sum_probs=22.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|++|||||+..+.|+..+
T Consensus 16 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 42 (190)
T TIGR01166 16 ERGEVLALLGANGAGKSTLLLHLNGLL 42 (190)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999988876543
No 385
>PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional
Probab=82.10 E-value=1.1 Score=49.67 Aligned_cols=28 Identities=32% Similarity=0.401 Sum_probs=24.2
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.+.+.+.|.|+||||||+..|.|+..+.
T Consensus 11 ~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~ 38 (213)
T PRK15177 11 GYHEHIGILAAPGSGKTTLTRLLCGLDA 38 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 4578899999999999999999887653
No 386
>PRK14732 coaE dephospho-CoA kinase; Provisional
Probab=82.01 E-value=1.3 Score=48.35 Aligned_cols=48 Identities=23% Similarity=0.468 Sum_probs=29.5
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHHHHHHhhcc-----HHHHhccC
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVEQQVLESNP-----VLEAFGNA 62 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve~~il~~~~-----ileafGna 62 (1388)
|.|+|.+|||||+.++++-++ |. ..-+...+...++..++ |.+.||..
T Consensus 2 i~itG~~gsGKst~~~~l~~~----g~-~~i~~D~i~~~~~~~~~~~~~~i~~~fG~~ 54 (196)
T PRK14732 2 IGITGMIGGGKSTALKILEEL----GA-FGISADRLAKRYTEPDSPILSELVSLLGPS 54 (196)
T ss_pred EEEECCCCccHHHHHHHHHHC----CC-EEEecchHHHHHHhcCcHHHHHHHHHhChh
Confidence 789999999999998866543 21 11112334444554332 67777764
No 387
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=82.00 E-value=1.1 Score=48.24 Aligned_cols=23 Identities=22% Similarity=0.472 Sum_probs=20.9
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
|+|.|.+|||||+.++.+.+.+-
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~ 24 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFG 24 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999988773
No 388
>cd03116 MobB Molybdenum is an essential trace element in the form of molybdenum cofactor (Moco) which is associated with the metabolism of nitrogen, carbon and sulfur by redox active enzymes. In E. coli, the synthesis of Moco involves genes from several loci: moa, mob, mod, moe and mog. The mob locus contains mobA and mobB genes. MobB catalyzes the attachment of the guanine dinucleotide to molybdopterin.
Probab=81.97 E-value=1.4 Score=46.41 Aligned_cols=28 Identities=36% Similarity=0.387 Sum_probs=24.8
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
..|.|.|.||||||+.++.+++.|...|
T Consensus 2 ~vi~i~G~~gsGKTTli~~L~~~l~~~g 29 (159)
T cd03116 2 KVIGFVGYSGSGKTTLLEKLIPALSARG 29 (159)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcC
Confidence 3688999999999999999999997654
No 389
>TIGR00634 recN DNA repair protein RecN. All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair.
Probab=81.97 E-value=1.3e+02 Score=38.77 Aligned_cols=51 Identities=18% Similarity=0.291 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 846 LLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 900 (1388)
Q Consensus 846 ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le 900 (1388)
.++++....++++.++..+.. ....++.++.++..+++++.++-.+++...
T Consensus 323 s~e~l~~~~~~l~~eL~~l~~----~~~~le~L~~el~~l~~~l~~~a~~Ls~~R 373 (563)
T TIGR00634 323 SVEEVLEYAEKIKEELDQLDD----SDESLEALEEEVDKLEEELDKAAVALSLIR 373 (563)
T ss_pred CHHHHHHHHHHHHHHHHHHhC----CHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444444444444443222 122344555555555555555555555443
No 390
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=81.93 E-value=0.88 Score=53.53 Aligned_cols=26 Identities=35% Similarity=0.575 Sum_probs=23.3
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...|+|+|.+|||||+..+.++.++.
T Consensus 144 ~~~ili~G~tGsGKTTll~al~~~~~ 169 (308)
T TIGR02788 144 RKNIIISGGTGSGKTTFLKSLVDEIP 169 (308)
T ss_pred CCEEEEECCCCCCHHHHHHHHHccCC
Confidence 56999999999999999999988763
No 391
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=81.93 E-value=1.5 Score=47.21 Aligned_cols=29 Identities=17% Similarity=0.296 Sum_probs=24.8
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
..+.|++.|.+|+|||..+..+.+.++.-
T Consensus 46 ~~~~l~l~G~~G~GKThLa~ai~~~~~~~ 74 (178)
T PF01695_consen 46 NGENLILYGPPGTGKTHLAVAIANEAIRK 74 (178)
T ss_dssp C--EEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred cCeEEEEEhhHhHHHHHHHHHHHHHhccC
Confidence 46789999999999999999999998874
No 392
>COG0497 RecN ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=81.87 E-value=1.5e+02 Score=37.52 Aligned_cols=180 Identities=17% Similarity=0.227 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHHHHHHHHHHHHHHHHHH----
Q 000617 729 RRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKR--------LRTDLEEAKSQEIAKLQEALHAMQLRVD---- 796 (1388)
Q Consensus 729 rk~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~--------~~~~le~~~~~E~~~L~~~le~l~~~l~---- 796 (1388)
+..+...+...+++..++........+..-++.++++-.+ ....-+..+-...+++...+.....-+.
T Consensus 160 ~~~y~~w~~~~~~l~~~~~~~~e~~~~~d~L~fq~~Ele~~~l~~gE~e~L~~e~~rLsn~ekl~~~~~~a~~~L~ge~~ 239 (557)
T COG0497 160 QEAYQAWKQARRELEDLQEKERERAQRADLLQFQLEELEELNLQPGEDEELEEERKRLSNSEKLAEAIQNALELLSGEDD 239 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHhhHHHHHHHHHHHHHHHhCCCC
Q ss_pred --HHHHHHHHHHHHHHHHHHhCCccccccchhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 797 --DANSLVIKEREAARKAIKEAPPVIKETPVII-QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTK 873 (1388)
Q Consensus 797 --~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~-~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~ 873 (1388)
.....+ ......-....+....+.++.... +...++.+...+....-..++.--..+++.+.++..+..-.++...
T Consensus 240 ~~~~~~~l-~~a~~~l~~~~~~d~~l~~~~~~l~ea~~~l~ea~~el~~~~~~le~Dp~~L~~ve~Rl~~L~~l~RKY~~ 318 (557)
T COG0497 240 TVSALSLL-GRALEALEDLSEYDGKLSELAELLEEALYELEEASEELRAYLDELEFDPNRLEEVEERLFALKSLARKYGV 318 (557)
T ss_pred chhHHHHH-HHHHHHHHHhhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHhCC
Q ss_pred HHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHH
Q 000617 874 KLKDAEKRVDELQDSVQRLAE---KVSNLESENQVLRQQ 909 (1388)
Q Consensus 874 ~l~~le~~i~~Lq~el~~lee---~i~~Le~E~~~Lkqq 909 (1388)
.+.++-...++++.+++.++. ....|+++.+.++++
T Consensus 319 ~~~~l~~~~~~~~~el~~L~~~~~~~~~Le~~~~~l~~~ 357 (557)
T COG0497 319 TIEDLLEYLDKIKEELAQLDNSEESLEALEKEVKKLKAE 357 (557)
T ss_pred CHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHH
No 393
>TIGR02673 FtsE cell division ATP-binding protein FtsE. This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein.
Probab=81.86 E-value=1.1 Score=49.44 Aligned_cols=27 Identities=41% Similarity=0.572 Sum_probs=23.1
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|+..+
T Consensus 26 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 52 (214)
T TIGR02673 26 RKGEFLFLTGPSGAGKTTLLKLLYGAL 52 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887654
No 394
>PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional
Probab=81.86 E-value=1.1 Score=53.16 Aligned_cols=27 Identities=30% Similarity=0.523 Sum_probs=23.5
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.||||||||+.++.|+..+
T Consensus 39 ~~Ge~~~IvG~sGsGKSTLl~~l~gl~ 65 (327)
T PRK11308 39 ERGKTLAVVGESGCGKSTLARLLTMIE 65 (327)
T ss_pred CCCCEEEEECCCCCcHHHHHHHHHcCC
Confidence 356899999999999999999988765
No 395
>PF10226 DUF2216: Uncharacterized conserved proteins (DUF2216); InterPro: IPR019359 Proteins in this entry are found in Metazoa and contain a coiled-coil domain. Some annotation suggests it might be PKR, the Hepatitis delta antigen-interacting protein A, but this could not be confirmed.
Probab=81.83 E-value=31 Score=36.74 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=20.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
.+.+++..-+..+.+++.+..+|-.||..|+.-
T Consensus 105 vmr~eV~~Y~~KL~eLE~kq~~L~rEN~eLKEl 137 (195)
T PF10226_consen 105 VMRQEVAQYQQKLKELEDKQEELIRENLELKEL 137 (195)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 345555666666666666666666666666653
No 396
>COG0802 Predicted ATPase or kinase [General function prediction only]
Probab=81.83 E-value=1.2 Score=45.90 Aligned_cols=28 Identities=32% Similarity=0.510 Sum_probs=24.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.+=.|+++|+=|||||+-+|-+.+.|..
T Consensus 24 ~g~Vv~L~GdLGAGKTtf~rgi~~~Lg~ 51 (149)
T COG0802 24 AGDVVLLSGDLGAGKTTLVRGIAKGLGV 51 (149)
T ss_pred CCCEEEEEcCCcCChHHHHHHHHHHcCC
Confidence 3457899999999999999999999964
No 397
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=81.82 E-value=0.45 Score=56.66 Aligned_cols=21 Identities=33% Similarity=0.528 Sum_probs=18.5
Q ss_pred CCCeEEEEecCcCCchHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTK 25 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k 25 (1388)
..||+||++||.|||||+-.-
T Consensus 60 ~~nQ~~v~vGetgsGKttQiP 80 (699)
T KOG0925|consen 60 LNNQIIVLVGETGSGKTTQIP 80 (699)
T ss_pred hcCceEEEEecCCCCccccCc
Confidence 579999999999999998643
No 398
>PRK10869 recombination and repair protein; Provisional
Probab=81.80 E-value=83 Score=40.28 Aligned_cols=31 Identities=16% Similarity=0.216 Sum_probs=16.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 879 EKRVDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 879 e~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+..+..|+.+++.+++++..+-.++...+++
T Consensus 340 e~~l~~Le~e~~~l~~~l~~~A~~LS~~R~~ 370 (553)
T PRK10869 340 EDDLETLALAVEKHHQQALETAQKLHQSRQR 370 (553)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444555555555555555555555555544
No 399
>cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=81.78 E-value=1.1 Score=49.85 Aligned_cols=26 Identities=19% Similarity=0.385 Sum_probs=22.5
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.+.+.|.|+||||||+..|.|+..+
T Consensus 29 ~G~~~~i~G~nGsGKSTLl~~l~Gl~ 54 (220)
T cd03293 29 EGEFVALVGPSGCGKSTLLRIIAGLE 54 (220)
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 56789999999999999999887654
No 400
>TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein.
Probab=81.77 E-value=1.1 Score=49.53 Aligned_cols=27 Identities=30% Similarity=0.506 Sum_probs=22.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.++..+
T Consensus 27 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 53 (216)
T TIGR00960 27 TKGEMVFLVGHSGAGKSTFLKLILGIE 53 (216)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999998887654
No 401
>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences. TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].
Probab=81.72 E-value=15 Score=39.12 Aligned_cols=63 Identities=19% Similarity=0.421 Sum_probs=34.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKN--GELTKKLKDAEKRVDELQDSVQRL 892 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~--~~l~~~l~~le~~i~~Lq~el~~l 892 (1388)
.+++..+..++..|+.++.+++.++..++.++..+.+.. .++...+..++.++..+++.++.+
T Consensus 71 ~eel~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~~~t~~el~~~i~~l~~e~~~l~~kL~~l 135 (169)
T PF07106_consen 71 PEELAELDAEIKELREELAELKKEVKSLEAELASLSSEPTNEELREEIEELEEEIEELEEKLEKL 135 (169)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445666777777777777777777776666666655543 333333333444444433333333
No 402
>PRK05416 glmZ(sRNA)-inactivating NTPase; Provisional
Probab=81.66 E-value=1.1 Score=52.14 Aligned_cols=21 Identities=38% Similarity=0.593 Sum_probs=19.3
Q ss_pred CeEEEEecCcCCchHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKML 27 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i 27 (1388)
.+-|+|+|.||||||+.++.+
T Consensus 6 ~~~i~i~G~~GsGKtt~~~~l 26 (288)
T PRK05416 6 MRLVIVTGLSGAGKSVALRAL 26 (288)
T ss_pred ceEEEEECCCCCcHHHHHHHH
Confidence 468999999999999999988
No 403
>PF05262 Borrelia_P83: Borrelia P83/100 protein; InterPro: IPR007926 This family consists of several Borrelia P83/P100 antigen proteins.
Probab=81.66 E-value=97 Score=38.63 Aligned_cols=17 Identities=24% Similarity=0.231 Sum_probs=11.0
Q ss_pred CCCchhhHHHHhhccCh
Q 000617 498 SIFENFNVIQQLRCGGV 514 (1388)
Q Consensus 498 ~~fd~~~v~~QLr~~gv 514 (1388)
+.-+..-...|+|.-|-
T Consensus 18 gp~~~~~t~~~i~~iG~ 34 (489)
T PF05262_consen 18 GPHASIETAQQIRGIGS 34 (489)
T ss_pred CCCcchhHHHHHHHHHH
Confidence 33455667788887664
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=81.64 E-value=1.5 Score=51.64 Aligned_cols=32 Identities=38% Similarity=0.374 Sum_probs=27.8
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhhC
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLGG 36 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~ 36 (1388)
++.+.|.+.|.+|||||+++..+..+++..++
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~ 143 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGK 143 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCC
Confidence 45689999999999999999999999986543
No 405
>cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD).
Probab=81.63 E-value=1.2 Score=49.76 Aligned_cols=27 Identities=30% Similarity=0.400 Sum_probs=24.2
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|+..+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~G~~ 50 (227)
T cd03260 24 PKGEITALIGPSGCGKSTLLRLLNRLN 50 (227)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 356889999999999999999998876
No 406
>PF14197 Cep57_CLD_2: Centrosome localisation domain of PPC89
Probab=81.60 E-value=19 Score=32.26 Aligned_cols=65 Identities=20% Similarity=0.291 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 842 NLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVL 906 (1388)
Q Consensus 842 ~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~L 906 (1388)
+|+.++..|...++.+..++...+..+..+..+-.....++...-.++.++..++..|.+|++.+
T Consensus 2 ~Lea~~~~Lr~rLd~~~rk~~~~~~~~k~L~~ERd~~~~~l~~a~~e~~~Lk~E~e~L~~el~~~ 66 (69)
T PF14197_consen 2 KLEAEIATLRNRLDSLTRKNSVHEIENKRLRRERDSAERQLGDAYEENNKLKEENEALRKELEEL 66 (69)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 35666666666666666666666665555555445555555555555555555555555554443
No 407
>PRK00698 tmk thymidylate kinase; Validated
Probab=81.59 E-value=1.5 Score=47.97 Aligned_cols=28 Identities=29% Similarity=0.395 Sum_probs=24.7
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
+-.|+|.|.+|||||+.++.+-++|...
T Consensus 3 ~~~I~ieG~~gsGKsT~~~~L~~~l~~~ 30 (205)
T PRK00698 3 GMFITIEGIDGAGKSTQIELLKELLEQQ 30 (205)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4589999999999999999999998643
No 408
>PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional
Probab=81.57 E-value=1.1 Score=53.15 Aligned_cols=27 Identities=26% Similarity=0.470 Sum_probs=23.6
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+.+|.|+..+
T Consensus 45 ~~Ge~~~lvG~sGsGKSTLlk~i~Gl~ 71 (331)
T PRK15079 45 YEGETLGVVGESGCGKSTFARAIIGLV 71 (331)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHCCC
Confidence 356889999999999999999998765
No 409
>PRK03839 putative kinase; Provisional
Probab=81.57 E-value=1.2 Score=47.85 Aligned_cols=23 Identities=39% Similarity=0.645 Sum_probs=20.7
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-|+|.|-+|||||+.++.+-+-+
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~ 24 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKL 24 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 38999999999999999988776
No 410
>PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional
Probab=81.53 E-value=1.1 Score=53.24 Aligned_cols=27 Identities=37% Similarity=0.561 Sum_probs=23.6
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|-||||||||+.++.|+..+
T Consensus 40 ~~Ge~~~ivG~sGsGKSTL~~~l~Gl~ 66 (330)
T PRK09473 40 RAGETLGIVGESGSGKSQTAFALMGLL 66 (330)
T ss_pred cCCCEEEEECCCCchHHHHHHHHHcCC
Confidence 356889999999999999999988766
No 411
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=81.50 E-value=1.2 Score=50.75 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=22.4
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|+++|-+|||||+.++.+-++|..
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~ 25 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSE 25 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999964
No 412
>TIGR02868 CydC thiol reductant ABC exporter, CydC subunit. The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex.
Probab=81.48 E-value=0.84 Score=58.06 Aligned_cols=28 Identities=25% Similarity=0.405 Sum_probs=25.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.+.+.|.|.|+||||||+.+|.++++..
T Consensus 359 ~~G~~vaIvG~SGsGKSTLl~lL~g~~~ 386 (529)
T TIGR02868 359 PPGERVAILGPSGSGKSTLLMLLTGLLD 386 (529)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 4678999999999999999999998764
No 413
>PF13514 AAA_27: AAA domain
Probab=81.46 E-value=2.5e+02 Score=39.42 Aligned_cols=21 Identities=24% Similarity=0.352 Sum_probs=17.7
Q ss_pred EecCcCCchHHHHHHHHHHHH
Q 000617 12 VSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 12 ~sGeSGaGKT~~~k~i~~yla 32 (1388)
|.|+.-||||++...|..-|-
T Consensus 1 IyGpNEAGKST~l~fI~~lLF 21 (1111)
T PF13514_consen 1 IYGPNEAGKSTLLAFIRDLLF 21 (1111)
T ss_pred CCCCCCCCHHHHHHHHHHHhc
Confidence 569999999999888877774
No 414
>cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=81.34 E-value=1.2 Score=49.02 Aligned_cols=27 Identities=30% Similarity=0.537 Sum_probs=23.1
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~G~~~~l~G~nGsGKSTLl~~l~G~~ 51 (211)
T cd03225 25 KKGEFVLIVGPNGSGKSTLLRLLNGLL 51 (211)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999887655
No 415
>PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional
Probab=81.33 E-value=0.94 Score=53.75 Aligned_cols=28 Identities=25% Similarity=0.475 Sum_probs=24.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.+.+.+-|-|+||||||+.++.|+..+.
T Consensus 31 ~~Ge~~~lvG~sGsGKSTL~~~l~Gll~ 58 (326)
T PRK11022 31 KQGEVVGIVGESGSGKSVSSLAIMGLID 58 (326)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3567889999999999999999988663
No 416
>PF11932 DUF3450: Protein of unknown function (DUF3450); InterPro: IPR016866 There is currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function. However, they are found in an operon along with components of a TonB transport system (typified by Vibrio cholerae TonB2 [], and are predicted to be localized to the periplasmic space. Caution: the low-complexity nature of these sequences produces spurious BLAST hits to chromosome segregation ATPases (which are much longer in length and contain canonical Walker motifs). Accordingly, some members are misidentified as such.
Probab=81.31 E-value=18 Score=41.14 Aligned_cols=55 Identities=11% Similarity=0.192 Sum_probs=23.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 832 KINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQ 886 (1388)
Q Consensus 832 ~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq 886 (1388)
+++.+..+...+..++..++.+++.++.....+++......+++.+++.+++.++
T Consensus 43 ~id~~~~e~~~L~~e~~~l~~e~e~L~~~~~~l~~~v~~q~~el~~L~~qi~~~~ 97 (251)
T PF11932_consen 43 RIDQWDDEKQELLAEYRQLEREIENLEVYNEQLERQVASQEQELASLEQQIEQIE 97 (251)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444444433333334444433333
No 417
>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function. Several sequences in this family are described as being myosin heavy chain-like.
Probab=81.23 E-value=1.7e+02 Score=37.29 Aligned_cols=13 Identities=46% Similarity=0.498 Sum_probs=5.3
Q ss_pred HHHHHHHHHHHHH
Q 000617 895 KVSNLESENQVLR 907 (1388)
Q Consensus 895 ~i~~Le~E~~~Lk 907 (1388)
.+..|+.++..++
T Consensus 338 ~v~~L~~eL~~~r 350 (522)
T PF05701_consen 338 EVSSLEAELNKTR 350 (522)
T ss_pred HHhhHHHHHHHHH
Confidence 3334444444333
No 418
>PRK15422 septal ring assembly protein ZapB; Provisional
Probab=81.17 E-value=26 Score=31.95 Aligned_cols=13 Identities=38% Similarity=0.539 Sum_probs=5.4
Q ss_pred HHHHHHHHHHHHH
Q 000617 896 VSNLESENQVLRQ 908 (1388)
Q Consensus 896 i~~Le~E~~~Lkq 908 (1388)
-..|+.+|..|++
T Consensus 48 r~~L~~en~qLk~ 60 (79)
T PRK15422 48 REELERENNHLKE 60 (79)
T ss_pred HHHHHHHHHHHHH
Confidence 3334444444443
No 419
>PRK14531 adenylate kinase; Provisional
Probab=81.14 E-value=1.4 Score=47.64 Aligned_cols=24 Identities=29% Similarity=0.367 Sum_probs=22.1
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
|-|++.|.+|||||+.++.+-+.+
T Consensus 3 ~~i~i~G~pGsGKsT~~~~la~~~ 26 (183)
T PRK14531 3 QRLLFLGPPGAGKGTQAARLCAAH 26 (183)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHh
Confidence 569999999999999999998876
No 420
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=81.03 E-value=1.5 Score=46.69 Aligned_cols=24 Identities=29% Similarity=0.498 Sum_probs=22.0
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+.|++.|-+|||||+.++.+-+.|
T Consensus 3 ~~i~~~G~~GsGKst~~~~la~~l 26 (171)
T PRK03731 3 QPLFLVGARGCGKTTVGMALAQAL 26 (171)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHh
Confidence 579999999999999999998776
No 421
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=80.99 E-value=1.3 Score=51.42 Aligned_cols=28 Identities=29% Similarity=0.439 Sum_probs=25.1
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHhhhC
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAYLGG 36 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~~~~ 36 (1388)
.|++.|++|+|||+.|+.+-+++...|.
T Consensus 60 ~vll~G~pGTGKT~lA~~ia~~l~~~g~ 87 (284)
T TIGR02880 60 HMSFTGNPGTGKTTVALRMAQILHRLGY 87 (284)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHHHHcCC
Confidence 5999999999999999999999987653
No 422
>cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup. This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.94 E-value=1.3 Score=48.96 Aligned_cols=27 Identities=22% Similarity=0.337 Sum_probs=23.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 50 (213)
T cd03259 24 EPGEFLALLGPSGCGKTTLLRLIAGLE 50 (213)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999887654
No 423
>PF06160 EzrA: Septation ring formation regulator, EzrA ; InterPro: IPR010379 During the bacterial cell cycle, the tubulin-like cell-division protein FtsZ polymerises into a ring structure that establishes the location of the nascent division site. EzrA modulates the frequency and position of FtsZ ring formation [].; GO: 0000921 septin ring assembly, 0005940 septin ring, 0016021 integral to membrane
Probab=80.84 E-value=1e+02 Score=39.58 Aligned_cols=20 Identities=15% Similarity=0.139 Sum_probs=9.3
Q ss_pred HHHHHHHHhhhhHHHHHHHH
Q 000617 608 IARKEFILLRNAAVILQSFL 627 (1388)
Q Consensus 608 ~~Rk~~~~~r~aai~iQa~~ 627 (1388)
..+-+|.+.+..+..++..+
T Consensus 91 ~~~~rf~ka~~~i~~~~~~l 110 (560)
T PF06160_consen 91 ADKYRFKKAKQAIKEIEEQL 110 (560)
T ss_pred HhcccHHHHHHHHHHHHHHH
Confidence 33444555555554444443
No 424
>cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane.
Probab=80.78 E-value=1.3 Score=49.11 Aligned_cols=27 Identities=26% Similarity=0.351 Sum_probs=23.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|+..+
T Consensus 28 ~~G~~~~l~G~nGsGKSTLl~~i~Gl~ 54 (218)
T cd03255 28 EKGEFVAIVGPSGSGKSTLLNILGGLD 54 (218)
T ss_pred cCCCEEEEEcCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999988765
No 425
>PRK10246 exonuclease subunit SbcC; Provisional
Probab=80.72 E-value=2.1e+02 Score=39.83 Aligned_cols=24 Identities=25% Similarity=0.378 Sum_probs=20.0
Q ss_pred CeEEEEecCcCCchHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
.--++|+|++|||||+....|.--
T Consensus 30 ~~l~~I~G~tGaGKStildai~~a 53 (1047)
T PRK10246 30 NGLFAITGPTGAGKTTLLDAICLA 53 (1047)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHH
Confidence 457899999999999998777733
No 426
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=80.69 E-value=1.2 Score=52.12 Aligned_cols=24 Identities=25% Similarity=0.327 Sum_probs=22.1
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+-||+.|.+|||||+.++.+.+.+
T Consensus 3 ~liil~G~pGSGKSTla~~L~~~~ 26 (300)
T PHA02530 3 KIILTVGVPGSGKSTWAREFAAKN 26 (300)
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHC
Confidence 579999999999999999998876
No 427
>PLN02796 D-glycerate 3-kinase
Probab=80.65 E-value=1.3 Score=52.32 Aligned_cols=23 Identities=30% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEecCcCCchHHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla 32 (1388)
|-|+|.||||||+.++.|...|.
T Consensus 103 IGI~G~sGSGKSTLa~~L~~lL~ 125 (347)
T PLN02796 103 IGISAPQGCGKTTLVFALVYLFN 125 (347)
T ss_pred EEEECCCCCcHHHHHHHHHHHhc
Confidence 78999999999999998887774
No 428
>KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism]
Probab=80.61 E-value=1.8 Score=51.93 Aligned_cols=41 Identities=24% Similarity=0.585 Sum_probs=31.6
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhhhCCCCCCCccHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYLGGRSGVEGRTVE 46 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~~~~~~~~~~~ve 46 (1388)
..|+|-+-|+||||||+..+.+.|++-.-+|+-.-++.+|.
T Consensus 563 pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIr 603 (790)
T KOG0056|consen 563 PGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIR 603 (790)
T ss_pred CCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHH
Confidence 46899999999999999999999999766554222344444
No 429
>smart00072 GuKc Guanylate kinase homologues. Active enzymes catalyze ATP-dependent phosphorylation of GMP to GDP. Structure resembles that of adenylate kinase. So-called membrane-associated guanylate kinase homologues (MAGUKs) do not possess guanylate kinase activities; instead at least some possess protein-binding functions.
Probab=80.56 E-value=1.2 Score=48.04 Aligned_cols=23 Identities=35% Similarity=0.536 Sum_probs=21.1
Q ss_pred EEEEecCcCCchHHHHHHHHHHH
Q 000617 9 SILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
-||++|.|||||++.++.+++.+
T Consensus 4 ~ivl~Gpsg~GK~tl~~~L~~~~ 26 (184)
T smart00072 4 PIVLSGPSGVGKGTLLAELIQEI 26 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHhcC
Confidence 58999999999999999998874
No 430
>cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.52 E-value=1.4 Score=47.25 Aligned_cols=27 Identities=19% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|++|||||+..|.++..+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 50 (178)
T cd03229 24 EAGEIVALLGPSGSGKSTLLRCIAGLE 50 (178)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 357889999999999999998887544
No 431
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=80.51 E-value=0.52 Score=62.10 Aligned_cols=8 Identities=38% Similarity=0.746 Sum_probs=4.0
Q ss_pred HHHHhcCc
Q 000617 1301 YRISTMYW 1308 (1388)
Q Consensus 1301 ~kiL~~Y~ 1308 (1388)
++|-++|.
T Consensus 656 ~rl~S~ya 663 (722)
T PF05557_consen 656 VRLTSMYA 663 (722)
T ss_dssp EEEEETT-
T ss_pred EEEEeccc
Confidence 45556664
No 432
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=80.48 E-value=1.5 Score=53.50 Aligned_cols=30 Identities=30% Similarity=0.462 Sum_probs=26.2
Q ss_pred CCCCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 4 EGKSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 4 ~~~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
.+...+++|+|.+|+|||..++.+++.+..
T Consensus 52 ~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~ 81 (394)
T PRK00411 52 GSRPLNVLIYGPPGTGKTTTVKKVFEELEE 81 (394)
T ss_pred CCCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 345678999999999999999999998854
No 433
>PRK00023 cmk cytidylate kinase; Provisional
Probab=80.45 E-value=1.7 Score=48.69 Aligned_cols=25 Identities=32% Similarity=0.553 Sum_probs=22.9
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
+-.|.|+|.+|||||+.++.+.+.|
T Consensus 4 ~~~i~i~g~~gsGksti~~~la~~~ 28 (225)
T PRK00023 4 AIVIAIDGPAGSGKGTVAKILAKKL 28 (225)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3679999999999999999999887
No 434
>TIGR03017 EpsF chain length determinant protein EpsF. Sequences in this family of proteins are members of the chain length determinant family (pfam02706) which includes the wzc protein from E.coli. This family of proteins are homologous to the EpsF protein of the methanolan biosynthesis operon of Methylobacillus species strain 12S. The distribution of this protein appears to be restricted to a subset of exopolysaccharide operons containing a syntenic grouping of genes including a variant of the EpsH exosortase protein. Exosortase has been proposed to be involved in the targetting and processing of proteins containing the PEP-CTERM domain to the exopolysaccharide layer.
Probab=80.44 E-value=78 Score=39.23 Aligned_cols=171 Identities=14% Similarity=0.154 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 739 ARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKS-----QEIAKLQEALHAMQLRVDDANSLVIKEREAARKAI 813 (1388)
Q Consensus 739 a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~-----~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~ 813 (1388)
............-++.++.+++.+++..+....+..+... +...-...++.++..++..++.+............
T Consensus 163 ~~~~~~~~~~~~fl~~ql~~~~~~l~~ae~~l~~fr~~~~i~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~~ 242 (444)
T TIGR03017 163 ELKVEPAQKAALWFVQQIAALREDLARAQSKLSAYQQEKGIVSSDERLDVERARLNELSAQLVAAQAQVMDASSKEGGSS 242 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCcccCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhccC
Q ss_pred H-hCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHH
Q 000617 814 K-EAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKL-KDAEKRVDELQDSVQR 891 (1388)
Q Consensus 814 ~-ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l-~~le~~i~~Lq~el~~ 891 (1388)
. ..-..+...+.+.....++.+++.+...+......-.-++..++.++..++........++ ..++.....+......
T Consensus 243 ~~~~~~~~~~~~~i~~l~~~l~~le~~l~~l~~~y~~~hP~v~~l~~~i~~l~~~l~~e~~~~~~~~~~~~~~~~~~~~~ 322 (444)
T TIGR03017 243 GKDALPEVIANPIIQNLKTDIARAESKLAELSQRLGPNHPQYKRAQAEINSLKSQLNAEIKKVTSSVGTNSRILKQREAE 322 (444)
T ss_pred CcccchhhhcChHHHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHH
Q 000617 892 LAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 892 lee~i~~Le~E~~~Lkqq 909 (1388)
++..+..++++...+-.+
T Consensus 323 l~~~l~~~~~~~~~l~~~ 340 (444)
T TIGR03017 323 LREALENQKAKVLELNRQ 340 (444)
T ss_pred HHHHHHHHHHHHHHHHHH
No 435
>COG1493 HprK Serine kinase of the HPr protein, regulates carbohydrate metabolism [Signal transduction mechanisms]
Probab=80.43 E-value=1.4 Score=50.32 Aligned_cols=24 Identities=38% Similarity=0.560 Sum_probs=20.3
Q ss_pred eEEEEecCcCCchHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
..|+|+|+||+||||+|--+++-=
T Consensus 146 vGVLItG~SG~GKSElALeLi~rg 169 (308)
T COG1493 146 VGVLITGPSGAGKSELALELIKRG 169 (308)
T ss_pred eEEEEECCCCCCHhHHHHHHHHhc
Confidence 468999999999999998777543
No 436
>cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring.
Probab=80.38 E-value=1.4 Score=48.75 Aligned_cols=27 Identities=26% Similarity=0.447 Sum_probs=22.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.+...+
T Consensus 25 ~~G~~~~i~G~nGsGKSTLl~~l~G~~ 51 (214)
T cd03292 25 SAGEFVFLVGPSGAGKSTLLKLIYKEE 51 (214)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999988887654
No 437
>cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.35 E-value=1.4 Score=49.79 Aligned_cols=27 Identities=22% Similarity=0.356 Sum_probs=23.2
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|++|||||+..|.++..+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 52 (239)
T cd03296 26 PSGELVALLGPSGSGKTTLLRLIAGLE 52 (239)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 467889999999999999999887654
No 438
>PHA00729 NTP-binding motif containing protein
Probab=80.30 E-value=1.6 Score=48.49 Aligned_cols=28 Identities=25% Similarity=0.280 Sum_probs=24.2
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
..-..|+|+|.+|+|||+.|..+.+.+.
T Consensus 15 ~~f~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 15 NGFVSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3446899999999999999999998765
No 439
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=80.26 E-value=1.9 Score=46.60 Aligned_cols=25 Identities=36% Similarity=0.482 Sum_probs=22.9
Q ss_pred EEEecCcCCchHHHHHHHHHHHHhh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
||++|-.|||||+-+|.+.+-|-.-
T Consensus 4 iIlTGyPgsGKTtfakeLak~L~~~ 28 (261)
T COG4088 4 IILTGYPGSGKTTFAKELAKELRQE 28 (261)
T ss_pred EEEecCCCCCchHHHHHHHHHHHHh
Confidence 8999999999999999999988754
No 440
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=80.24 E-value=1 Score=56.20 Aligned_cols=25 Identities=40% Similarity=0.543 Sum_probs=22.2
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHH
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
--|+|+|++|||||++...+++++.
T Consensus 243 GlilitGptGSGKTTtL~a~L~~l~ 267 (486)
T TIGR02533 243 GIILVTGPTGSGKTTTLYAALSRLN 267 (486)
T ss_pred CEEEEEcCCCCCHHHHHHHHHhccC
Confidence 4689999999999999998888874
No 441
>TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group. A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins.
Probab=80.15 E-value=1.4 Score=48.37 Aligned_cols=27 Identities=26% Similarity=0.346 Sum_probs=22.8
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|++|||||+..+.++..+
T Consensus 22 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 48 (206)
T TIGR03608 22 EKGKMYAIIGESGSGKSTLLNIIGLLE 48 (206)
T ss_pred eCCcEEEEECCCCCCHHHHHHHHhcCC
Confidence 356789999999999999999887644
No 442
>cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=80.04 E-value=1.4 Score=49.38 Aligned_cols=28 Identities=25% Similarity=0.293 Sum_probs=23.7
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
...+.+.|.|+||||||+..+.+...+.
T Consensus 29 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~~ 56 (233)
T cd03258 29 PKGEIFGIIGRSGAGKSTLIRCINGLER 56 (233)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4678999999999999999988876553
No 443
>PRK10436 hypothetical protein; Provisional
Probab=80.02 E-value=1.3 Score=54.86 Aligned_cols=26 Identities=38% Similarity=0.510 Sum_probs=22.8
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.=-|+|+|.+|||||++...+++++.
T Consensus 218 ~GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 218 QGLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CCeEEEECCCCCChHHHHHHHHHhhC
Confidence 34689999999999999999999874
No 444
>COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism]
Probab=79.91 E-value=1.5 Score=47.85 Aligned_cols=22 Identities=32% Similarity=0.608 Sum_probs=18.2
Q ss_pred CCeEEEEecCcCCchHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKML 27 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i 27 (1388)
+-..++|.|.||||||+..+.|
T Consensus 27 ~Gevv~iiGpSGSGKSTlLRcl 48 (240)
T COG1126 27 KGEVVVIIGPSGSGKSTLLRCL 48 (240)
T ss_pred CCCEEEEECCCCCCHHHHHHHH
Confidence 4567999999999999976644
No 445
>cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters. This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates.
Probab=79.89 E-value=1.4 Score=48.81 Aligned_cols=27 Identities=26% Similarity=0.448 Sum_probs=22.8
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+..+.|...+
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~G~~ 49 (213)
T cd03235 23 KPGEFLAIVGPNGAGKSTLLKAILGLL 49 (213)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHcCCC
Confidence 356789999999999999999886544
No 446
>cd02026 PRK Phosphoribulokinase (PRK) is an enzyme involved in the Benson-Calvin cycle in chloroplasts or photosynthetic prokaryotes. This enzyme catalyzes the phosphorylation of D-ribulose 5-phosphate to form D-ribulose 1, 5-biphosphate, using ATP and NADPH produced by the primary reactions of photosynthesis.
Probab=79.86 E-value=1.4 Score=50.90 Aligned_cols=22 Identities=36% Similarity=0.555 Sum_probs=19.6
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|-|.|.||||||+.++.+...|
T Consensus 2 igI~G~sGsGKSTl~~~L~~ll 23 (273)
T cd02026 2 IGVAGDSGCGKSTFLRRLTSLF 23 (273)
T ss_pred EEEECCCCCCHHHHHHHHHHhh
Confidence 6789999999999999888766
No 447
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=79.77 E-value=1.2 Score=58.09 Aligned_cols=30 Identities=23% Similarity=0.401 Sum_probs=25.9
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
..|.|-|.|+||||||+.+|.++....--.
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~ 527 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLYKPQQ 527 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCCCCCC
Confidence 568899999999999999999998875433
No 448
>TIGR03752 conj_TIGR03752 integrating conjugative element protein, PFL_4705 family. Members of this protein family are found occasionally on plasmids such as the Pseudomonas putida toluene catabolic TOL plasmid pWWO_p085. Usually, however, they are found on the bacterial main chromosome in regions flanked by markers of conjugative transfer and/or transposition.
Probab=79.74 E-value=17 Score=44.42 Aligned_cols=79 Identities=15% Similarity=0.294 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 830 TEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKD-AEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 830 ~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~-le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.+-+..|-.+.++++.+++.+.++++.+.++.+.|++......+++.. ++....+++++.+.++++...++..+..|+.
T Consensus 58 ~DTlrTlva~~k~~r~~~~~l~~~N~~l~~eN~~L~~r~~~id~~i~~av~~~~~~~~~~~~ql~~~~~~~~~~l~~l~~ 137 (472)
T TIGR03752 58 ADTLRTLVAEVKELRKRLAKLISENEALKAENERLQKREQSIDQQIQQAVQSETQELTKEIEQLKSERQQLQGLIDQLQR 137 (472)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345556666666677777777777666666666666655444444422 2333344444444444444444444444443
No 449
>PRK14974 cell division protein FtsY; Provisional
Probab=79.69 E-value=1.9 Score=51.04 Aligned_cols=31 Identities=42% Similarity=0.553 Sum_probs=27.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
++...|++.|..|+|||+++..+..+|...+
T Consensus 138 ~~~~vi~~~G~~GvGKTTtiakLA~~l~~~g 168 (336)
T PRK14974 138 GKPVVIVFVGVNGTGKTTTIAKLAYYLKKNG 168 (336)
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHHHHHcC
Confidence 3468999999999999999999999987654
No 450
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=79.66 E-value=1.4 Score=46.02 Aligned_cols=26 Identities=27% Similarity=0.500 Sum_probs=20.9
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
..-.|.|.|.||+|||+..|.+..-.
T Consensus 28 ~Ge~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 28 AGEFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred CCceEEEeCCCCccHHHHHHHHHhcc
Confidence 34579999999999999888765443
No 451
>COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only]
Probab=79.62 E-value=1.1 Score=55.65 Aligned_cols=27 Identities=30% Similarity=0.511 Sum_probs=22.9
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
-.++=|-||||||||+.+|.|+..+--
T Consensus 317 GE~lglVGeSGsGKSTlar~i~gL~~P 343 (539)
T COG1123 317 GETLGLVGESGSGKSTLARILAGLLPP 343 (539)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCCCC
Confidence 456678899999999999999988754
No 452
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=79.60 E-value=1.5 Score=46.65 Aligned_cols=24 Identities=25% Similarity=0.537 Sum_probs=20.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMR 29 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~ 29 (1388)
.+..|+|.||+|+||+..|+.|-+
T Consensus 21 ~~~pVlI~GE~GtGK~~lA~~IH~ 44 (168)
T PF00158_consen 21 SDLPVLITGETGTGKELLARAIHN 44 (168)
T ss_dssp STS-EEEECSTTSSHHHHHHHHHH
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHH
Confidence 457899999999999999999866
No 453
>cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt
Probab=79.60 E-value=1.6 Score=46.34 Aligned_cols=27 Identities=26% Similarity=0.485 Sum_probs=23.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|++|||||+..+.++..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (166)
T cd03223 25 KPGDRLLITGPSGTGKSSLFRALAGLW 51 (166)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 357889999999999999999988765
No 454
>PLN03188 kinesin-12 family protein; Provisional
Probab=79.58 E-value=2.5e+02 Score=38.73 Aligned_cols=18 Identities=17% Similarity=0.313 Sum_probs=12.8
Q ss_pred hcCCCHHHHHHHHHHHHH
Q 000617 166 IVGISDQEQEAIFRVVAA 183 (1388)
Q Consensus 166 ~lgi~~~~~~~i~~ilaa 183 (1388)
.-||-+.-...||..+.+
T Consensus 199 e~GIIPRaledLF~~I~e 216 (1320)
T PLN03188 199 QQGLTPRVFERLFARINE 216 (1320)
T ss_pred cCCchHHHHHHHHHHHHh
Confidence 457777777788877654
No 455
>PRK13764 ATPase; Provisional
Probab=79.55 E-value=1.5 Score=55.58 Aligned_cols=27 Identities=33% Similarity=0.610 Sum_probs=24.3
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
...|+|+|.+|||||+++..+++|+..
T Consensus 257 ~~~ILIsG~TGSGKTTll~AL~~~i~~ 283 (602)
T PRK13764 257 AEGILIAGAPGAGKSTFAQALAEFYAD 283 (602)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 456999999999999999999999964
No 456
>PRK11176 lipid transporter ATP-binding/permease protein; Provisional
Probab=79.48 E-value=1.3 Score=57.14 Aligned_cols=28 Identities=25% Similarity=0.572 Sum_probs=25.1
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.+.|.+.|.|+||||||+.+|.++..+.
T Consensus 367 ~~G~~~aIvG~sGsGKSTLl~ll~gl~~ 394 (582)
T PRK11176 367 PAGKTVALVGRSGSGKSTIANLLTRFYD 394 (582)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhccC
Confidence 4678999999999999999999998774
No 457
>PRK06526 transposase; Provisional
Probab=79.47 E-value=1.7 Score=49.59 Aligned_cols=29 Identities=21% Similarity=0.191 Sum_probs=25.3
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
..+.|++.|.+|+|||+.+..|...++.-
T Consensus 97 ~~~nlll~Gp~GtGKThLa~al~~~a~~~ 125 (254)
T PRK06526 97 GKENVVFLGPPGTGKTHLAIGLGIRACQA 125 (254)
T ss_pred cCceEEEEeCCCCchHHHHHHHHHHHHHC
Confidence 34679999999999999999999888754
No 458
>TIGR01000 bacteriocin_acc bacteriocin secretion accessory protein. This family represents an accessory protein that works with the bacteriocin maturation and ABC transport secretion protein described by TIGR01193.
Probab=79.41 E-value=1.7e+02 Score=36.42 Aligned_cols=23 Identities=17% Similarity=0.465 Sum_probs=9.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Q 000617 878 AEKRVDELQDSVQRLAEKVSNLE 900 (1388)
Q Consensus 878 le~~i~~Lq~el~~lee~i~~Le 900 (1388)
...++...+.++..++..+...+
T Consensus 289 ~~~~l~~~~~~l~~~~~~l~~a~ 311 (457)
T TIGR01000 289 VKQEITDLNQKLLELESKIKSLK 311 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 33344444444444444433333
No 459
>cd01672 TMPK Thymidine monophosphate kinase (TMPK), also known as thymidylate kinase, catalyzes the phosphorylation of thymidine monophosphate (TMP) to thymidine diphosphate (TDP) utilizing ATP as its preferred phophoryl donor. TMPK represents the rate-limiting step in either de novo or salvage biosynthesis of thymidine triphosphate (TTP).
Probab=79.37 E-value=1.7 Score=47.06 Aligned_cols=24 Identities=38% Similarity=0.522 Sum_probs=22.5
Q ss_pred EEEecCcCCchHHHHHHHHHHHHh
Q 000617 10 ILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
|+|.|..|||||+.++.+-++|..
T Consensus 3 I~ieG~~GsGKtT~~~~L~~~l~~ 26 (200)
T cd01672 3 IVFEGIDGAGKTTLIELLAERLEA 26 (200)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHH
Confidence 899999999999999999999964
No 460
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=79.30 E-value=1.6 Score=47.94 Aligned_cols=28 Identities=29% Similarity=0.538 Sum_probs=22.2
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
+-.++|.|.||||||+..+.++.-++..
T Consensus 38 ~~h~li~G~tgsGKS~~l~~ll~~l~~~ 65 (205)
T PF01580_consen 38 NPHLLIAGATGSGKSTLLRTLLLSLALT 65 (205)
T ss_dssp S-SEEEE--TTSSHHHHHHHHHHHHHTT
T ss_pred CceEEEEcCCCCCccHHHHHHHHHHHHH
Confidence 3479999999999999999999888864
No 461
>PRK12377 putative replication protein; Provisional
Probab=79.29 E-value=1.8 Score=49.06 Aligned_cols=28 Identities=21% Similarity=0.325 Sum_probs=25.6
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHHhh
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLAYL 34 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla~~ 34 (1388)
.++++++|.+|+|||..+..|.+++..-
T Consensus 101 ~~~l~l~G~~GtGKThLa~AIa~~l~~~ 128 (248)
T PRK12377 101 CTNFVFSGKPGTGKNHLAAAIGNRLLAK 128 (248)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHc
Confidence 4789999999999999999999999854
No 462
>KOG1962 consensus B-cell receptor-associated protein and related proteins [Defense mechanisms]
Probab=79.18 E-value=11 Score=41.45 Aligned_cols=61 Identities=25% Similarity=0.334 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESEN 903 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~ 903 (1388)
|+.+++.++.+...+++++++.+.++..+++... .++++.+.++++-+++-++.++|+++.
T Consensus 149 ~~~~~~~~~~~~~kL~~el~~~~~~Le~~~~~~~-------al~Kq~e~~~~EydrLlee~~~Lq~~i 209 (216)
T KOG1962|consen 149 LEEENDKLKADLEKLETELEKKQKKLEKAQKKVD-------ALKKQSEGLQDEYDRLLEEYSKLQEQI 209 (216)
T ss_pred hhhhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 3334444444444444444444444444444444 455555555555555555555555543
No 463
>KOG4807 consensus F-actin binding protein, regulates actin cytoskeletal organization [Cytoskeleton]
Probab=79.15 E-value=1.4e+02 Score=35.16 Aligned_cols=170 Identities=16% Similarity=0.157 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---------------HHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHH
Q 000617 735 LKMAARETGALQEAKNKLEKRVEELTWRLQIEK---------------RLRTDLEEAKSQEIAKLQEA-LHAMQLRVDDA 798 (1388)
Q Consensus 735 lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~---------------~~~~~le~~~~~E~~~L~~~-le~l~~~l~~~ 798 (1388)
.....++++.+......++.+.+..+..+...+ +-..++++...+.+++|+.+ -.+++.-.++.
T Consensus 293 ~~~L~k~vQ~L~AQle~~R~q~e~~q~~~~s~~d~~~~~~~~~qatCERgfAaMEetHQkkiEdLQRqHqRELekLreEK 372 (593)
T KOG4807|consen 293 HEALEKEVQALRAQLEAWRLQGEAPQSALRSQEDGHIPPGYISQATCERGFAAMEETHQKKIEDLQRQHQRELEKLREEK 372 (593)
T ss_pred hHHHHHHHHHHHHHHHHHHHhccCchhhHhhhhhccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHhCCccccccchhh--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 799 NSLVIKEREAARKAIKEAPPVIKETPVII--QDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLK 876 (1388)
Q Consensus 799 ~~~l~~e~~~~~~~~~ele~~~~e~~~l~--~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~ 876 (1388)
...+.++...-..+++.+.+.-.|--... +....+...+.-.+...++++.+.-+++-+-.+...-.-++..+.+.++
T Consensus 373 drLLAEETAATiSAIEAMKnAhrEEmeRELeKsqSvnsdveaLRrQyleelqsvqRELeVLSEQYSQKCLEnahLaqalE 452 (593)
T KOG4807|consen 373 DRLLAEETAATISAIEAMKNAHREEMERELEKSQSVNSDVEALRRQYLEELQSVQRELEVLSEQYSQKCLENAHLAQALE 452 (593)
T ss_pred HhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHhhhccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 877 DAEKRVDELQDSVQRLAEKVSNLESENQ 904 (1388)
Q Consensus 877 ~le~~i~~Lq~el~~lee~i~~Le~E~~ 904 (1388)
.-++.++.-+.+.+++....++|...+.
T Consensus 453 aerqaLRqCQrEnQELnaHNQELnnRLa 480 (593)
T KOG4807|consen 453 AERQALRQCQRENQELNAHNQELNNRLA 480 (593)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHhhHHH
No 464
>PF13173 AAA_14: AAA domain
Probab=79.13 E-value=1.9 Score=43.56 Aligned_cols=26 Identities=35% Similarity=0.505 Sum_probs=23.9
Q ss_pred CeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 7 SNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 7 ~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
++.++|.|..|+|||+.++.+++++.
T Consensus 2 ~~~~~l~G~R~vGKTtll~~~~~~~~ 27 (128)
T PF13173_consen 2 RKIIILTGPRGVGKTTLLKQLAKDLL 27 (128)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhc
Confidence 46899999999999999999998876
No 465
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=79.11 E-value=44 Score=39.76 Aligned_cols=15 Identities=27% Similarity=0.392 Sum_probs=7.7
Q ss_pred cchhhHHHHHHHHHH
Q 000617 1039 LSYWLSNASTLLLLL 1053 (1388)
Q Consensus 1039 l~fWLSN~~~Ll~~l 1053 (1388)
+-.|=-+..++++-|
T Consensus 243 ~r~Wnvd~~r~~~TL 257 (459)
T KOG0288|consen 243 LRLWNVDSLRLRHTL 257 (459)
T ss_pred eeeeeccchhhhhhh
Confidence 345555555555543
No 466
>PRK02496 adk adenylate kinase; Provisional
Probab=79.08 E-value=1.6 Score=47.02 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=20.5
Q ss_pred EEEecCcCCchHHHHHHHHHHH
Q 000617 10 ILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 10 Ii~sGeSGaGKT~~~k~i~~yl 31 (1388)
|+|.|.+|||||+.++.+-+.+
T Consensus 4 i~i~G~pGsGKst~a~~la~~~ 25 (184)
T PRK02496 4 LIFLGPPGAGKGTQAVVLAEHL 25 (184)
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 8999999999999999998776
No 467
>PRK11124 artP arginine transporter ATP-binding subunit; Provisional
Probab=79.07 E-value=1.6 Score=49.34 Aligned_cols=27 Identities=26% Similarity=0.425 Sum_probs=22.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+..|.|...+
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 52 (242)
T PRK11124 26 PQGETLVLLGPSGAGKSSLLRVLNLLE 52 (242)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356889999999999999999887543
No 468
>cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules.
Probab=79.02 E-value=1.6 Score=48.53 Aligned_cols=27 Identities=33% Similarity=0.493 Sum_probs=22.5
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.+...+
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 50 (222)
T cd03224 24 PEGEIVALLGRNGAGKTTLLKTIMGLL 50 (222)
T ss_pred cCCeEEEEECCCCCCHHHHHHHHhCCC
Confidence 467899999999999999988876443
No 469
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=78.98 E-value=1.1 Score=46.09 Aligned_cols=25 Identities=40% Similarity=0.775 Sum_probs=19.9
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHH
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
.+..|+|.||+|+||+..|++|-.+
T Consensus 20 ~~~pvli~GE~GtGK~~~A~~lh~~ 44 (138)
T PF14532_consen 20 SSSPVLITGEPGTGKSLLARALHRY 44 (138)
T ss_dssp SSS-EEEECCTTSSHHHHHHCCHHT
T ss_pred CCCcEEEEcCCCCCHHHHHHHHHhh
Confidence 4678999999999999988766554
No 470
>TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein. Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates.
Probab=78.98 E-value=1.6 Score=49.31 Aligned_cols=27 Identities=26% Similarity=0.449 Sum_probs=22.9
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|...+
T Consensus 26 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~ 52 (243)
T TIGR02315 26 NPGEFVAIIGPSGAGKSTLLRCINRLV 52 (243)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 456889999999999999999887654
No 471
>cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.96 E-value=1.6 Score=48.35 Aligned_cols=26 Identities=23% Similarity=0.300 Sum_probs=22.4
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+ +.+.|.|++|||||+..+.++..+
T Consensus 22 ~~-e~~~i~G~nGsGKSTLl~~l~G~~ 47 (214)
T cd03297 22 NE-EVTGIFGASGAGKSTLLRCIAGLE 47 (214)
T ss_pred cc-eeEEEECCCCCCHHHHHHHHhCCC
Confidence 35 889999999999999999887554
No 472
>cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein.
Probab=78.94 E-value=1.7 Score=47.94 Aligned_cols=27 Identities=33% Similarity=0.466 Sum_probs=23.1
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|++|||||+..+.+...+
T Consensus 24 ~~G~~~~i~G~nGsGKSTLl~~l~Gl~ 50 (208)
T cd03268 24 KKGEIYGFLGPNGAGKTTTMKIILGLI 50 (208)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCCc
Confidence 356889999999999999999987644
No 473
>TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system. Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification.
Probab=78.92 E-value=1.6 Score=49.06 Aligned_cols=27 Identities=26% Similarity=0.411 Sum_probs=23.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
...+.+.|.|+||||||+..+.|...+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~G~~ 51 (236)
T TIGR03864 25 RPGEFVALLGPNGAGKSTLFSLLTRLY 51 (236)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 357889999999999999998887554
No 474
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=78.90 E-value=1.7 Score=51.62 Aligned_cols=26 Identities=38% Similarity=0.533 Sum_probs=23.5
Q ss_pred eEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 8 NSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 8 QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
..+++.|++|+|||+.++.+.+++..
T Consensus 37 ~~lll~Gp~GtGKT~la~~~~~~l~~ 62 (337)
T PRK12402 37 PHLLVQGPPGSGKTAAVRALARELYG 62 (337)
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhcC
Confidence 47999999999999999999998863
No 475
>PF07889 DUF1664: Protein of unknown function (DUF1664); InterPro: IPR012458 The members of this family are hypothetical plant proteins of unknown function. The region featured in this family is approximately 100 amino acids long.
Probab=78.82 E-value=26 Score=35.29 Aligned_cols=65 Identities=20% Similarity=0.293 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 836 LTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLE 900 (1388)
Q Consensus 836 L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le 900 (1388)
|...++.|.+.|+.+-.++++..+-....+.+..++...+.....++...+..+..|+.++..++
T Consensus 59 l~~tKkhLsqRId~vd~klDe~~ei~~~i~~eV~~v~~dv~~i~~dv~~v~~~V~~Le~ki~~ie 123 (126)
T PF07889_consen 59 LSSTKKHLSQRIDRVDDKLDEQKEISKQIKDEVTEVREDVSQIGDDVDSVQQMVEGLEGKIDEIE 123 (126)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33334444444444444444444444444444444444444555555555555555555555443
No 476
>cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system. Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.76 E-value=1.6 Score=49.13 Aligned_cols=27 Identities=26% Similarity=0.378 Sum_probs=23.3
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+..+.|+..+
T Consensus 25 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 51 (241)
T cd03256 25 NPGEFVALIGPSGAGKSTLLRCLNGLV 51 (241)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCc
Confidence 356789999999999999999988655
No 477
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=78.76 E-value=1.6 Score=53.47 Aligned_cols=25 Identities=40% Similarity=0.497 Sum_probs=22.6
Q ss_pred EEEEecCcCCchHHHHHHHHHHHHh
Q 000617 9 SILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 9 sIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
=|+|+|.+|||||++..-+++++-+
T Consensus 260 liLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 260 LILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 4789999999999999999999864
No 478
>PRK08084 DNA replication initiation factor; Provisional
Probab=78.75 E-value=1.7 Score=48.96 Aligned_cols=28 Identities=21% Similarity=0.243 Sum_probs=24.7
Q ss_pred CCeEEEEecCcCCchHHHHHHHHHHHHh
Q 000617 6 KSNSILVSGESGAGKTETTKMLMRYLAY 33 (1388)
Q Consensus 6 ~~QsIi~sGeSGaGKT~~~k~i~~yla~ 33 (1388)
...++++.|++|+|||+.+..+.+++..
T Consensus 44 ~~~~l~l~Gp~G~GKThLl~a~~~~~~~ 71 (235)
T PRK08084 44 HSGYIYLWSREGAGRSHLLHAACAELSQ 71 (235)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHHh
Confidence 3468999999999999999999988774
No 479
>COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair]
Probab=78.75 E-value=2.7e+02 Score=38.16 Aligned_cols=56 Identities=25% Similarity=0.418 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 852 QTADEAKQAFTVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLR 907 (1388)
Q Consensus 852 ~~~~ele~~~~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lk 907 (1388)
..+.....+.........+....+...+.....+...+...++.+..++...+.++
T Consensus 389 ~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~ 444 (908)
T COG0419 389 EAIQELKEELAELSAALEEIQEELEELEKELEELERELEELEEEIKKLEEQINQLE 444 (908)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 33333333333333333444444444444444445555555555555555544444
No 480
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=78.72 E-value=2.2 Score=49.24 Aligned_cols=31 Identities=42% Similarity=0.501 Sum_probs=26.7
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHHhhh
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLAYLG 35 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla~~~ 35 (1388)
++...|++.|.+|+|||+++-.+..+++..+
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g 100 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQG 100 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcC
Confidence 4568999999999999999999988887654
No 481
>COG3096 MukB Uncharacterized protein involved in chromosome partitioning [Cell division and chromosome partitioning]
Probab=78.69 E-value=2e+02 Score=36.73 Aligned_cols=49 Identities=18% Similarity=0.245 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 000617 864 SEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQALA 912 (1388)
Q Consensus 864 l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~~~ 912 (1388)
+........++-..+|+++.-.+.+++.+..++.+++.+.+.++.+.++
T Consensus 1064 Lh~~Lst~RsRr~~~EkqlT~~E~E~~~L~~~~rK~ErDY~~~Re~VV~ 1112 (1480)
T COG3096 1064 LHAQLSTNRSRRNQLEKQLTFCEAEMDNLTRKLRKLERDYFEMREQVVT 1112 (1480)
T ss_pred HHHHHhccHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 3333333334445677778888888888888888999999888887554
No 482
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=78.62 E-value=1.7 Score=46.64 Aligned_cols=28 Identities=32% Similarity=0.461 Sum_probs=23.5
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYLA 32 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yla 32 (1388)
.....+.|.|+||||||+..+.+...+.
T Consensus 23 ~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~ 50 (177)
T cd03222 23 KEGEVIGIVGPNGTGKTTAVKILAGQLI 50 (177)
T ss_pred CCCCEEEEECCCCChHHHHHHHHHcCCC
Confidence 3566889999999999999998887653
No 483
>PF05557 MAD: Mitotic checkpoint protein; InterPro: IPR008672 This family consists of several eukaryotic mitotic checkpoint (Mitotic arrest deficient or MAD) proteins. The mitotic spindle checkpoint monitors proper attachment of the bipolar spindle to the kinetochores of aligned sister chromatids and causes a cell cycle arrest in prometaphase when failures occur. Multiple components of the mitotic spindle checkpoint have been identified in Saccharomyces cerevisiae and higher eukaryotes. In Saccharomyces cerevisiae, the existence of a Mad1-dependent complex containing Mad2, Mad3, Bub3 and Cdc20 has been demonstrated [].; PDB: 1GO4_F 4DZO_A.
Probab=78.61 E-value=0.65 Score=61.21 Aligned_cols=13 Identities=31% Similarity=0.516 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHH
Q 000617 896 VSNLESENQVLRQ 908 (1388)
Q Consensus 896 i~~Le~E~~~Lkq 908 (1388)
+..++-++..|+.
T Consensus 307 l~~lq~e~~~Le~ 319 (722)
T PF05557_consen 307 LAELQLENEKLED 319 (722)
T ss_dssp -------------
T ss_pred HHHHHHHHHHHHH
Confidence 3333334444443
No 484
>cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein.
Probab=78.58 E-value=1.7 Score=48.20 Aligned_cols=26 Identities=35% Similarity=0.411 Sum_probs=22.3
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRY 30 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~y 30 (1388)
...+.+.|.|+||||||+..+.|...
T Consensus 29 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl 54 (218)
T cd03266 29 KPGEVTGLLGPNGAGKTTTLRMLAGL 54 (218)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHhCC
Confidence 35688999999999999999988653
No 485
>cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.57 E-value=1.7 Score=48.66 Aligned_cols=24 Identities=21% Similarity=0.425 Sum_probs=19.8
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
.+.+.+.|.|+||||||+.+..++
T Consensus 19 ~~Ge~~~l~G~sGsGKSTL~~~~i 42 (226)
T cd03270 19 PRNKLVVITGVSGSGKSSLAFDTI 42 (226)
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHH
Confidence 467899999999999999975444
No 486
>TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D. This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase.
Probab=78.57 E-value=1.7 Score=48.78 Aligned_cols=27 Identities=22% Similarity=0.354 Sum_probs=23.5
Q ss_pred CCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
.+.+.+.|.|+||||||+..+.++..+
T Consensus 9 ~~Ge~~~i~G~nGsGKSTLl~~l~Gl~ 35 (230)
T TIGR01184 9 QQGEFISLIGHSGCGKSTLLNLISGLA 35 (230)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHhCCC
Confidence 356789999999999999999988665
No 487
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.52 E-value=1.8 Score=46.28 Aligned_cols=24 Identities=33% Similarity=0.475 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKStLl~~l~ 47 (173)
T cd03230 24 EKGEIYGLLGPNGAGKTTLIKIIL 47 (173)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHh
No 488
>cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ).
Probab=78.51 E-value=1.6 Score=49.10 Aligned_cols=24 Identities=25% Similarity=0.293 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.|.|+||||||+..+.++
T Consensus 24 ~~Ge~~~l~G~nGsGKSTLl~~l~ 47 (236)
T cd03219 24 RPGEIHGLIGPNGAGKTTLFNLIS 47 (236)
T ss_pred cCCcEEEEECCCCCCHHHHHHHHc
No 489
>PRK10908 cell division protein FtsE; Provisional
Probab=78.45 E-value=1.7 Score=48.33 Aligned_cols=24 Identities=29% Similarity=0.522 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.|.|+||||||+..+.|.
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (222)
T PRK10908 26 RPGEMAFLTGHSGAGKSTLLKLIC 49 (222)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 490
>PF10212 TTKRSYEDQ: Predicted coiled-coil domain-containing protein; InterPro: IPR019348 This entry represents a C-terminal 500 residue region, which contains a conserved TTKRSYEDQ motif. It is found in a family of coiled-coil domain-containing proteins that are conserved from nematodes to humans. These proteins also contain an N-terminal domain with a KLRAQ motif (IPR019343 from INTERPRO). The function of these proteins is not known.
Probab=78.43 E-value=1.9e+02 Score=36.16 Aligned_cols=190 Identities=13% Similarity=0.126 Sum_probs=0.0
Q ss_pred HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-
Q 000617 712 LQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKSQEIAKLQEALHA- 790 (1388)
Q Consensus 712 ~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~~E~~~L~~~le~- 790 (1388)
.++|+..+.+.-+-...--+|...-.-.+-+..-.+.+.+|-.++.+.++++...+.......-+..-+.-+|+++...
T Consensus 267 ~~~a~~~~~~~~~p~~~svpy~~a~~n~ril~sstes~e~L~qqV~qs~EKIa~LEqEKEHw~LEaQL~kIKLEKEnkRi 346 (518)
T PF10212_consen 267 KKRAAAYMSSLKKPCPESVPYEEALANRRILLSSTESREGLAQQVQQSQEKIAKLEQEKEHWMLEAQLAKIKLEKENKRI 346 (518)
T ss_pred HHHHHHHHHHhcCCCCccCChHHHHhhhHHHhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred --HHHHH---------------------------------------------------HHHHHHHHHHHHHHHHHHHhCC
Q 000617 791 --MQLRV---------------------------------------------------DDANSLVIKEREAARKAIKEAP 817 (1388)
Q Consensus 791 --l~~~l---------------------------------------------------~~~~~~l~~e~~~~~~~~~ele 817 (1388)
++.++ .+...+-...+.--...+.++-
T Consensus 347 adLekevak~~v~~s~~e~~~l~~~~e~~se~s~~~~~e~~~~t~l~gml~~~~~~~~~E~esRE~LIk~~Y~~RI~eLt 426 (518)
T PF10212_consen 347 ADLEKEVAKGQVAESSQESSVLSEASEQQSEASSQSVDEPLQPTSLSGMLTSTSEQESPEEESREQLIKSYYMSRIEELT 426 (518)
T ss_pred HHHHHHHhccccccchhhhhhhcccccccccccccccccccccccccccccccccccCCchhhHHHHHHHHHHHHHHHHH
Q ss_pred ccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHH
Q 000617 818 PVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSEAKNGELTKKLKDA----EKRVDELQDSVQRLA 893 (1388)
Q Consensus 818 ~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~~~~~~l~~~l~~l----e~~i~~Lq~el~~le 893 (1388)
..+.. ...+......|.+.|...++..+++.+.+..++.++...+..++.++... |.++..+.+.+..+.
T Consensus 427 ~qlQ~------adSKa~~f~~Ec~aL~~rL~~aE~ek~~l~eeL~~a~~~i~~LqDEL~TTr~NYE~QLs~MSEHLasmN 500 (518)
T PF10212_consen 427 SQLQH------ADSKAVHFYAECRALQKRLESAEKEKESLEEELKEANQNISRLQDELETTRRNYEEQLSMMSEHLASMN 500 (518)
T ss_pred HHHHH------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHH
Q 000617 894 EKVSNLESENQVLR 907 (1388)
Q Consensus 894 e~i~~Le~E~~~Lk 907 (1388)
+++.+..+|.+.||
T Consensus 501 eqL~~Q~eeI~~LK 514 (518)
T PF10212_consen 501 EQLAKQREEIQTLK 514 (518)
T ss_pred HHHHHHHHHHHHHh
No 491
>PF06818 Fez1: Fez1; InterPro: IPR009638 This family represents the eukaryotic Fez1 protein. Fez1 contains a leucine-zipper region with similarity to the DNA-binding domain of the cAMP-responsive activating-transcription factor 5 []. There is evidence that Fez1 inhibits cancer cell growth through regulation of mitosis, and that its alterations result in abnormal cell growth []. Note that some family members contain more than one copy of this region.; GO: 0005737 cytoplasm, 0016020 membrane
Probab=78.38 E-value=73 Score=34.76 Aligned_cols=123 Identities=23% Similarity=0.264 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 777 KSQEIAKLQEALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADE 856 (1388)
Q Consensus 777 ~~~E~~~L~~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~e 856 (1388)
+..|++-|+.++.+.+.++..--.++...+..++.....+.. .+..+..|......-..+++..+.++..
T Consensus 8 k~GEIsLLKqQLke~q~E~~~K~~Eiv~Lr~ql~e~~~~l~~----------~~~~~~~l~~~~~~K~~ELE~ce~ELqr 77 (202)
T PF06818_consen 8 KSGEISLLKQQLKESQAEVNQKDSEIVSLRAQLRELRAELRN----------KESQIQELQDSLRTKQLELEVCENELQR 77 (202)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHh----------hHHHHHHHHHHHHHhhHhHHHhHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 857 AKQAFTVSEAKNGELTKKLKDAEKRVDEL-----------------------QDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 857 le~~~~~l~~~~~~l~~~l~~le~~i~~L-----------------------q~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
...+..-++.....+..++..+....... .+.+..+...+..|..|+...++.
T Consensus 78 ~~~Ea~lLrekl~~le~El~~Lr~~l~~~~~~~~~~~~l~~~deak~~~~~~~~~~~~l~~e~erL~aeL~~er~~ 153 (202)
T PF06818_consen 78 KKNEAELLREKLGQLEAELAELREELACAGRLKRQCQLLSESDEAKAQRQAGEDELGSLRREVERLRAELQRERQR 153 (202)
T ss_pred HhCHHHHhhhhhhhhHHHHHHHHHHHHhhccchhhhccccccchhHHhhccccccchhHHHHHHHHHHHHHHHHHh
No 492
>PF02994 Transposase_22: L1 transposable element; InterPro: IPR004244 Many human L1 elements are capable of retrotransposition. Some of these have been shown to exhibit reverse transcriptase (RT) activity [] although the function of many are, as yet, unknown. More information about these proteins can be found at Protein of the Month: Transposase [].; PDB: 2LDY_A 3SOO_A 2YKQ_A 2YKO_C 2YKP_B 2W7A_B 2JRB_A.
Probab=78.37 E-value=5.7 Score=47.87 Aligned_cols=132 Identities=19% Similarity=0.326 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHHHHH
Q 000617 773 LEEAKSQEIAKLQEALHAMQLRVD----DANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQ 848 (1388)
Q Consensus 773 le~~~~~E~~~L~~~le~l~~~l~----~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~ 848 (1388)
++.-+......|+++.+....++. +..+.............+...+.+.+ ....+.++..+++.++....
T Consensus 49 ~E~~Kk~~~~qLrE~~et~~KE~~~~eKe~kE~~~K~~~~~~e~~ek~~k~l~e------l~~~~~elkkEie~IKk~q~ 122 (370)
T PF02994_consen 49 LEDFKKDFKNQLREQDETPEKELKNKEKELKENIIKNLEVLKEEKEKSIKELNE------LKKRIKELKKEIENIKKNQS 122 (370)
T ss_dssp ---------------------------------------------------------------------------H----
T ss_pred HHHhhhhhHHHHHHhhhhhhhhhhhhhhhhhHhhhhhcccccchhhhhHHHHHH------HHHHHHHHHHHHHHHhhhHH
Q ss_pred HHHHHHHHHHHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 849 SQTQTADEAKQAF----TVSEAKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQQA 910 (1388)
Q Consensus 849 ~l~~~~~ele~~~----~~l~~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkqq~ 910 (1388)
+...++..+.... ..+....++++.++.+++..+.++.+.+..++..+..+......|+..+
T Consensus 123 e~~~~i~~~~~~~~~~~~~l~~Ri~e~Eeris~lEd~~~~i~~~~~~~~k~i~~l~~kl~DlEnrs 188 (370)
T PF02994_consen 123 EMKLEIENLKKKLENIDESLNSRIDELEERISELEDRIEEIEQAIKELEKRIKKLEDKLDDLENRS 188 (370)
T ss_dssp ---------------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhc
No 493
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=78.33 E-value=1.9 Score=46.40 Aligned_cols=24 Identities=25% Similarity=0.340 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
....-+.|.|+||||||+..+.++
T Consensus 19 ~~G~~~~l~G~nG~GKSTLl~~il 42 (176)
T cd03238 19 PLNVLVVVTGVSGSGKSTLVNEGL 42 (176)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 494
>cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=78.31 E-value=1.8 Score=48.17 Aligned_cols=24 Identities=42% Similarity=0.535 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
.+.+.+.|.|++|||||+..+.|.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~i~ 47 (220)
T cd03265 24 RRGEIFGLLGPNGAGKTTTIKMLT 47 (220)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 495
>PRK13539 cytochrome c biogenesis protein CcmA; Provisional
Probab=78.30 E-value=1.8 Score=47.73 Aligned_cols=24 Identities=21% Similarity=0.588 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
.+.+.+.|.|+||||||+..+.++
T Consensus 26 ~~Ge~~~i~G~nGsGKSTLl~~l~ 49 (207)
T PRK13539 26 AAGEALVLTGPNGSGKTTLLRLIA 49 (207)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 496
>cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively. Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM
Probab=78.23 E-value=1.8 Score=47.81 Aligned_cols=24 Identities=25% Similarity=0.495 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~G~~~~l~G~nGsGKSTLl~~l~ 47 (213)
T cd03262 24 KKGEVVVIIGPSGSGKSTLLRCIN 47 (213)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHh
No 497
>cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems.
Probab=78.19 E-value=1.8 Score=47.64 Aligned_cols=24 Identities=38% Similarity=0.548 Sum_probs=0.0
Q ss_pred CCCeEEEEecCcCCchHHHHHHHH
Q 000617 5 GKSNSILVSGESGAGKTETTKMLM 28 (1388)
Q Consensus 5 ~~~QsIi~sGeSGaGKT~~~k~i~ 28 (1388)
...+.+.|.|+||||||+..+.+.
T Consensus 24 ~~Ge~~~i~G~nGsGKSTLl~~l~ 47 (205)
T cd03226 24 YAGEIIALTGKNGAGKTTLAKILA 47 (205)
T ss_pred cCCCEEEEECCCCCCHHHHHHHHh
No 498
>PRK09343 prefoldin subunit beta; Provisional
Probab=78.17 E-value=52 Score=33.07 Aligned_cols=86 Identities=17% Similarity=0.229 Sum_probs=0.0
Q ss_pred chhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------------HHHHHHHHHHHHHHHHHH
Q 000617 824 PVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTV----------------------SEAKNGELTKKLKDAEKR 881 (1388)
Q Consensus 824 ~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~----------------------l~~~~~~l~~~l~~le~~ 881 (1388)
+.+...-.++..++.+...+......++.++.+.+..+.+ .......+..+++.++.+
T Consensus 7 ~~~q~~~~~~q~lq~~l~~~~~q~~~le~q~~e~~~~~~EL~~L~~d~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ 86 (121)
T PRK09343 7 PEVQAQLAQLQQLQQQLERLLQQKSQIDLELREINKALEELEKLPDDTPIYKIVGNLLVKVDKTKVEKELKERKELLELR 86 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcchhHHHhhHHHhhccHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 882 VDELQDSVQRLAEKVSNLESENQVLRQQ 909 (1388)
Q Consensus 882 i~~Lq~el~~lee~i~~Le~E~~~Lkqq 909 (1388)
+..++...+.+++++.+++.....+-++
T Consensus 87 ik~lekq~~~l~~~l~e~q~~l~~ll~~ 114 (121)
T PRK09343 87 SRTLEKQEKKLREKLKELQAKINEMLSK 114 (121)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
No 499
>PRK10361 DNA recombination protein RmuC; Provisional
Probab=78.17 E-value=1.9e+02 Score=36.05 Aligned_cols=188 Identities=12% Similarity=0.078 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHH
Q 000617 709 YKKLQRAIIVSQCGWRCRVARRELRKLKMAARETGALQEAKNKLEKRVEELTWRLQIEKRLRTDLEEAKS---QEIAKLQ 785 (1388)
Q Consensus 709 ~~~~~~a~i~iQ~~~R~~~ark~l~~lk~~a~e~~~l~~~~~~Le~kv~~l~~~l~~e~~~~~~le~~~~---~E~~~L~ 785 (1388)
|..+..+++.++...-++.. ..+.........+.........+......+. ++.........+.+... .+...+.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~ 80 (475)
T PRK10361 3 FSIMVYAVIALVGVAIGWLF-ASYQHAQQKAEQLAEREEMVAELSAAKQQIT-QSEHWRAECELLNNEVRSLQSINTSLE 80 (475)
T ss_pred hHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 786 EALHAMQLRVDDANSLVIKEREAARKAIKEAPPVIKETPVIIQDTEKINSLTAEVENLKGLLQSQTQTADEAKQAFTVSE 865 (1388)
Q Consensus 786 ~~le~l~~~l~~~~~~l~~e~~~~~~~~~ele~~~~e~~~l~~~~~~~~~L~~e~~~Lk~ei~~l~~~~~ele~~~~~l~ 865 (1388)
.++.+++..++..+....+....+....+++....+.+....=++..-.-.+.....+...+.=+++.++..++++.+..
T Consensus 81 ~~~~~l~~~le~~~~~~~ek~~~l~~~~~~L~~~F~~LA~~ile~k~~~f~~~~~~~l~~ll~Pl~e~l~~f~~~v~~~~ 160 (475)
T PRK10361 81 ADLREVTTRMEAAQQHADDKIRQMINSEQRLSEQFENLANRIFEHSNRRVDEQNRQSLNSLLSPLREQLDGFRRQVQDSF 160 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 000617 866 AKNGELTKKLKDAEKRVDELQDSVQRLAEKVSNLESENQVLRQ 908 (1388)
Q Consensus 866 ~~~~~l~~~l~~le~~i~~Lq~el~~lee~i~~Le~E~~~Lkq 908 (1388)
.... +....|..++..+.+....+..|-..|-+
T Consensus 161 ~~~~----------~~~~~L~~qi~~L~~~n~~i~~ea~nLt~ 193 (475)
T PRK10361 161 GKEA----------QERHTLAHEIRNLQQLNAQMAQEAINLTR 193 (475)
T ss_pred HHHH----------HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
No 500
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=78.09 E-value=2.1 Score=51.70 Aligned_cols=29 Identities=31% Similarity=0.463 Sum_probs=0.0
Q ss_pred cCCCCeEEEEecCcCCchHHHHHHHHHHH
Q 000617 3 NEGKSNSILVSGESGAGKTETTKMLMRYL 31 (1388)
Q Consensus 3 ~~~~~QsIi~sGeSGaGKT~~~k~i~~yl 31 (1388)
..+-.++++++|+.|+|||+.++.+.+.+
T Consensus 34 ~~~~~h~~L~~Gp~G~GKTtla~~la~~l 62 (363)
T PRK14961 34 LGRIHHAWLLSGTRGVGKTTIARLLAKSL 62 (363)
T ss_pred cCCCCeEEEEecCCCCCHHHHHHHHHHHh
Done!